Query 035724
Match_columns 1939
No_of_seqs 844 out of 3663
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 09:26:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035724.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035724hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b3f_X DNA-binding protein smu 100.0 4.7E-53 1.6E-57 552.6 42.9 437 9-491 2-638 (646)
2 2gk6_A Regulator of nonsense t 100.0 1.8E-44 6E-49 469.6 42.9 434 3-491 1-612 (624)
3 2wjy_A Regulator of nonsense t 100.0 1.4E-43 4.9E-48 469.2 44.3 445 1-491 175-788 (800)
4 2xzl_A ATP-dependent helicase 100.0 3.7E-43 1.3E-47 465.9 40.4 445 1-491 177-790 (802)
5 3lfu_A DNA helicase II; SF1 he 99.7 2.7E-17 9.1E-22 215.0 20.5 131 278-434 213-346 (647)
6 3e1s_A Exodeoxyribonuclease V, 99.6 3.7E-15 1.2E-19 192.0 13.8 187 152-369 145-361 (574)
7 1w36_D RECD, exodeoxyribonucle 99.6 1.8E-15 6.2E-20 196.5 10.3 197 148-364 101-373 (608)
8 1pjr_A PCRA; DNA repair, DNA r 99.5 9.6E-14 3.3E-18 184.0 17.8 61 954-1028 559-620 (724)
9 3upu_A ATP-dependent DNA helic 99.4 7.1E-13 2.4E-17 166.8 11.2 48 956-1026 412-459 (459)
10 3upu_A ATP-dependent DNA helic 99.4 6.5E-13 2.2E-17 167.2 10.6 153 207-367 24-212 (459)
11 3dmn_A Putative DNA helicase; 99.3 9.7E-13 3.3E-17 144.6 6.4 106 894-1029 29-154 (174)
12 1xi4_A Clathrin heavy chain; a 99.2 7.9E-10 2.7E-14 149.7 27.0 155 1059-1214 979-1159(1630)
13 1xi4_A Clathrin heavy chain; a 99.2 1.4E-09 4.7E-14 147.4 25.5 249 1062-1335 1102-1381(1630)
14 3vkw_A Replicase large subunit 99.2 2.3E-11 7.9E-16 150.4 7.3 132 230-372 161-321 (446)
15 3e1s_A Exodeoxyribonuclease V, 99.0 4E-10 1.4E-14 145.3 9.4 37 716-752 187-226 (574)
16 1b89_A Protein (clathrin heavy 98.9 2.7E-09 9.4E-14 132.2 11.4 137 1062-1214 29-173 (449)
17 2gk6_A Regulator of nonsense t 98.9 3.5E-09 1.2E-13 138.2 11.1 79 932-1030 499-587 (624)
18 2wjy_A Regulator of nonsense t 98.9 4.9E-09 1.7E-13 139.7 12.7 79 932-1030 675-763 (800)
19 2xzl_A ATP-dependent helicase 98.8 6E-09 2.1E-13 139.1 10.5 79 932-1030 677-765 (802)
20 1uaa_A REP helicase, protein ( 98.7 3.7E-09 1.3E-13 139.2 3.2 63 952-1028 550-612 (673)
21 3u4q_A ATP-dependent helicase/ 98.6 7.7E-09 2.6E-13 144.4 4.1 80 951-1030 785-885 (1232)
22 4b3f_X DNA-binding protein smu 98.6 9E-08 3.1E-12 125.5 13.8 79 932-1030 532-613 (646)
23 1uaa_A REP helicase, protein ( 98.6 1.2E-07 4.2E-12 124.7 14.9 137 277-440 206-346 (673)
24 2xpi_A Anaphase-promoting comp 98.6 9.3E-06 3.2E-10 103.2 30.8 99 1149-1268 287-397 (597)
25 1w36_B RECB, exodeoxyribonucle 98.6 1.3E-08 4.3E-13 141.9 2.9 76 952-1027 734-817 (1180)
26 1w3b_A UDP-N-acetylglucosamine 98.6 2.6E-06 8.7E-11 102.6 22.5 286 1062-1375 64-376 (388)
27 1pjr_A PCRA; DNA repair, DNA r 98.5 2.8E-07 9.6E-12 122.3 13.5 137 278-440 216-355 (724)
28 3ieg_A DNAJ homolog subfamily 98.5 1.1E-05 3.6E-10 94.4 24.1 180 1168-1368 125-336 (359)
29 3fp2_A TPR repeat-containing p 98.5 2.6E-06 9E-11 106.4 19.7 206 1148-1379 216-469 (537)
30 3mkq_A Coatomer beta'-subunit; 98.5 9.8E-07 3.3E-11 116.8 16.6 124 1138-1287 656-779 (814)
31 4a1s_A PINS, partner of inscut 98.5 1.7E-05 5.7E-10 95.8 25.6 265 1066-1375 49-380 (411)
32 3mkq_A Coatomer beta'-subunit; 98.4 3.6E-06 1.2E-10 111.3 20.3 97 1121-1217 681-777 (814)
33 3ro2_A PINS homolog, G-protein 98.4 1.1E-05 3.7E-10 92.8 21.7 262 1065-1371 5-336 (338)
34 2gw1_A Mitochondrial precursor 98.4 1.4E-05 4.6E-10 99.0 23.8 49 1166-1214 240-295 (514)
35 2y4t_A DNAJ homolog subfamily 98.4 1.5E-05 5E-10 97.4 23.6 285 1064-1370 25-361 (450)
36 2xpi_A Anaphase-promoting comp 98.4 4E-05 1.4E-09 97.4 27.9 179 1166-1370 376-582 (597)
37 3sf4_A G-protein-signaling mod 98.4 3.4E-05 1.2E-09 92.1 25.3 264 1063-1371 7-340 (406)
38 1w3b_A UDP-N-acetylglucosamine 98.3 1.5E-05 5.1E-10 95.9 21.0 272 1062-1368 30-335 (388)
39 3ieg_A DNAJ homolog subfamily 98.3 9.9E-05 3.4E-09 86.1 25.8 205 1141-1367 127-352 (359)
40 3uq3_A Heat shock protein STI1 98.3 2.8E-05 9.6E-10 86.6 19.8 189 1064-1307 4-197 (258)
41 2y4t_A DNAJ homolog subfamily 98.2 0.00013 4.3E-09 89.1 24.1 254 1062-1336 57-356 (450)
42 1b89_A Protein (clathrin heavy 98.1 8.2E-05 2.8E-09 92.5 21.7 283 1059-1367 55-372 (449)
43 1qqe_A Vesicular transport pro 98.1 0.00015 5E-09 84.9 21.5 166 1071-1272 43-227 (292)
44 3ulq_A Response regulator aspa 98.1 0.00066 2.3E-08 81.8 27.5 144 1070-1214 108-289 (383)
45 3hym_B Cell division cycle pro 98.0 0.0002 7E-09 82.7 21.5 243 1062-1333 19-294 (330)
46 4a1s_A PINS, partner of inscut 98.0 0.00031 1.1E-08 84.6 23.3 148 1066-1214 87-288 (411)
47 3sf4_A G-protein-signaling mod 98.0 0.00052 1.8E-08 81.8 24.9 187 1066-1268 48-291 (406)
48 2ifu_A Gamma-SNAP; membrane fu 98.0 0.00034 1.2E-08 82.4 22.3 201 1076-1336 2-222 (307)
49 2gw1_A Mitochondrial precursor 98.0 0.00031 1.1E-08 86.7 22.9 210 1141-1376 244-487 (514)
50 3q15_A PSP28, response regulat 98.0 0.00067 2.3E-08 81.8 25.3 150 1067-1217 103-289 (378)
51 3ulq_A Response regulator aspa 98.0 0.0019 6.6E-08 77.7 28.6 219 1127-1372 109-373 (383)
52 4eqf_A PEX5-related protein; a 97.9 8.3E-05 2.9E-09 88.4 15.5 189 1065-1307 65-271 (365)
53 3mkq_B Coatomer subunit alpha; 97.9 0.00028 9.5E-09 77.4 18.1 135 1142-1328 13-147 (177)
54 1fch_A Peroxisomal targeting s 97.9 4.4E-05 1.5E-09 90.3 12.8 216 1066-1335 65-311 (368)
55 3fp2_A TPR repeat-containing p 97.9 0.00054 1.8E-08 85.4 23.1 228 1121-1374 215-498 (537)
56 3nf1_A KLC 1, kinesin light ch 97.9 0.00073 2.5E-08 77.3 22.0 173 1065-1270 27-221 (311)
57 3ro2_A PINS homolog, G-protein 97.8 0.0013 4.5E-08 75.3 23.1 27 1066-1092 44-70 (338)
58 3cv0_A Peroxisome targeting si 97.8 0.00052 1.8E-08 79.2 19.6 29 1063-1091 53-81 (327)
59 1qqe_A Vesicular transport pro 97.8 0.0021 7.1E-08 75.1 24.5 48 1288-1335 163-225 (292)
60 1fch_A Peroxisomal targeting s 97.8 0.00074 2.5E-08 79.7 20.5 31 1062-1092 95-125 (368)
61 2pl2_A Hypothetical conserved 97.8 0.00041 1.4E-08 77.4 17.1 29 1064-1092 4-32 (217)
62 4eqf_A PEX5-related protein; a 97.8 0.00081 2.8E-08 79.9 20.5 64 1062-1147 96-159 (365)
63 3vtx_A MAMA; tetratricopeptide 97.8 0.00055 1.9E-08 73.2 17.2 156 1062-1268 2-165 (184)
64 4g1t_A Interferon-induced prot 97.8 0.00046 1.6E-08 85.0 18.8 67 1067-1146 53-119 (472)
65 3mkq_B Coatomer subunit alpha; 97.7 0.00068 2.3E-08 74.3 17.2 96 1121-1216 34-129 (177)
66 3hym_B Cell division cycle pro 97.7 0.00051 1.7E-08 79.3 16.8 204 1140-1369 62-301 (330)
67 1w36_C RECC, exodeoxyribonucle 97.7 8.7E-06 3E-10 112.8 2.1 69 952-1028 657-732 (1122)
68 1xnf_A Lipoprotein NLPI; TPR, 97.7 0.0011 3.6E-08 74.8 18.8 215 1064-1331 42-268 (275)
69 3u4t_A TPR repeat-containing p 97.6 0.0012 4.2E-08 74.4 18.7 49 1165-1214 110-167 (272)
70 2ho1_A Type 4 fimbrial biogene 97.6 0.00055 1.9E-08 76.5 15.5 120 1065-1214 37-166 (252)
71 3uq3_A Heat shock protein STI1 97.6 0.0017 5.7E-08 72.1 19.2 112 1063-1189 36-165 (258)
72 2xm6_A Protein corresponding t 97.6 0.0071 2.4E-07 75.7 27.1 68 1147-1214 164-248 (490)
73 2fz4_A DNA repair protein RAD2 97.6 0.00016 5.5E-09 83.0 11.0 41 205-252 90-130 (237)
74 2xm6_A Protein corresponding t 97.6 0.013 4.6E-07 73.2 28.3 68 1147-1214 200-284 (490)
75 3b6e_A Interferon-induced heli 97.5 9E-05 3.1E-09 82.3 7.1 40 205-251 30-69 (216)
76 1ouv_A Conserved hypothetical 97.5 0.0028 9.5E-08 72.3 19.6 31 1063-1093 4-34 (273)
77 3q15_A PSP28, response regulat 97.5 0.029 9.8E-07 67.5 29.4 218 1126-1373 106-371 (378)
78 2q7f_A YRRB protein; TPR, prot 97.5 0.00034 1.2E-08 77.4 11.5 157 1062-1269 20-184 (243)
79 1a5t_A Delta prime, HOLB; zinc 97.5 0.00013 4.4E-09 88.0 8.5 113 211-323 5-158 (334)
80 2gno_A DNA polymerase III, gam 97.5 9.7E-05 3.3E-09 88.2 7.2 94 230-323 18-132 (305)
81 2vq2_A PILW, putative fimbrial 97.5 0.0033 1.1E-07 68.1 18.7 189 1064-1307 7-206 (225)
82 2zpa_A Uncharacterized protein 97.5 9.7E-05 3.3E-09 95.8 7.2 140 207-366 174-334 (671)
83 2ifu_A Gamma-SNAP; membrane fu 97.4 0.0025 8.6E-08 74.9 18.1 164 1069-1270 40-221 (307)
84 3ec2_A DNA replication protein 97.3 0.00024 8.1E-09 77.5 7.1 80 210-289 16-111 (180)
85 1rif_A DAR protein, DNA helica 97.3 0.00041 1.4E-08 81.3 9.4 80 207-293 112-240 (282)
86 1hz4_A MALT regulatory protein 97.3 0.1 3.5E-06 62.0 30.6 271 1069-1370 18-325 (373)
87 2ho1_A Type 4 fimbrial biogene 97.3 0.0032 1.1E-07 70.3 16.2 161 1116-1308 32-200 (252)
88 1w36_D RECD, exodeoxyribonucle 97.3 7.7E-05 2.6E-09 97.1 3.1 53 953-1030 532-584 (608)
89 1jbk_A CLPB protein; beta barr 97.3 0.00068 2.3E-08 72.9 10.1 78 210-291 27-128 (195)
90 2gxq_A Heat resistant RNA depe 97.3 0.00034 1.2E-08 77.4 7.9 35 207-248 22-56 (207)
91 3te6_A Regulatory protein SIR3 97.3 0.00038 1.3E-08 83.4 8.6 45 212-256 27-71 (318)
92 3mkr_A Coatomer subunit epsilo 97.3 0.02 6.9E-07 67.1 23.0 22 1069-1090 38-59 (291)
93 3u4q_B ATP-dependent helicase/ 97.3 0.00017 5.9E-09 100.6 6.2 68 952-1026 586-668 (1166)
94 3lfu_A DNA helicase II; SF1 he 97.2 0.00038 1.3E-08 90.9 9.0 70 717-817 8-78 (647)
95 3cv0_A Peroxisome targeting si 97.2 0.0018 6.1E-08 74.6 13.5 227 1123-1370 23-272 (327)
96 3edt_B KLC 2, kinesin light ch 97.2 0.017 5.7E-07 64.6 20.6 131 1121-1270 43-195 (283)
97 4gyw_A UDP-N-acetylglucosamine 97.2 0.0019 6.4E-08 85.8 14.5 120 1065-1214 9-136 (723)
98 3bos_A Putative DNA replicatio 97.2 0.0012 4.1E-08 74.2 10.9 80 209-292 35-118 (242)
99 3llm_A ATP-dependent RNA helic 97.2 0.00051 1.7E-08 78.4 7.6 37 208-251 61-97 (235)
100 1xnf_A Lipoprotein NLPI; TPR, 97.1 0.03 1E-06 62.8 22.0 115 1077-1217 17-139 (275)
101 1vec_A ATP-dependent RNA helic 97.1 0.00068 2.3E-08 75.0 8.1 35 207-248 24-58 (206)
102 3uk6_A RUVB-like 2; hexameric 97.1 0.00092 3.1E-08 80.9 9.8 50 210-259 49-99 (368)
103 2qgz_A Helicase loader, putati 97.1 0.00069 2.3E-08 80.9 8.3 124 231-354 153-301 (308)
104 3as5_A MAMA; tetratricopeptide 97.1 0.01 3.4E-07 61.9 16.4 119 1066-1214 9-135 (186)
105 1qde_A EIF4A, translation init 97.1 0.00065 2.2E-08 76.3 7.5 34 207-247 35-68 (224)
106 1ouv_A Conserved hypothetical 97.1 0.0079 2.7E-07 68.5 16.6 81 1124-1214 9-103 (273)
107 2w58_A DNAI, primosome compone 97.1 0.00075 2.6E-08 74.7 7.7 81 210-290 31-127 (202)
108 2chg_A Replication factor C sm 97.1 0.0012 4.2E-08 72.6 9.3 80 210-293 22-117 (226)
109 3edt_B KLC 2, kinesin light ch 97.0 0.018 6.3E-07 64.3 19.0 131 1065-1215 43-195 (283)
110 2p65_A Hypothetical protein PF 97.0 0.00087 3E-08 72.1 7.5 77 211-291 28-128 (187)
111 2z0m_A 337AA long hypothetical 97.0 0.00079 2.7E-08 79.6 7.8 79 207-292 15-143 (337)
112 3nf1_A KLC 1, kinesin light ch 97.0 0.032 1.1E-06 63.5 21.0 131 1065-1215 69-221 (311)
113 2q7f_A YRRB protein; TPR, prot 97.0 0.0079 2.7E-07 66.3 15.3 157 1062-1269 54-218 (243)
114 1hv8_A Putative ATP-dependent 97.0 0.00097 3.3E-08 79.8 8.4 39 207-251 27-65 (367)
115 4i17_A Hypothetical protein; T 97.0 0.0057 2E-07 67.7 13.6 126 1062-1216 4-144 (228)
116 3qky_A Outer membrane assembly 96.9 0.012 4.1E-07 66.7 16.5 130 1062-1216 12-175 (261)
117 4gco_A Protein STI-1; structur 96.9 0.0031 1E-07 64.6 10.3 94 1066-1189 14-107 (126)
118 1sxj_A Activator 1 95 kDa subu 96.9 0.0014 4.7E-08 83.7 9.3 103 209-313 43-188 (516)
119 2orw_A Thymidine kinase; TMTK, 96.9 0.0011 3.8E-08 73.2 7.3 82 230-312 3-111 (184)
120 2pl3_A Probable ATP-dependent 96.9 0.0011 3.6E-08 75.3 7.3 35 207-248 46-80 (236)
121 3vtx_A MAMA; tetratricopeptide 96.9 0.01 3.5E-07 63.2 14.6 119 1122-1269 6-132 (184)
122 3ber_A Probable ATP-dependent 96.9 0.0013 4.4E-08 75.9 7.9 35 207-248 64-98 (249)
123 3iuy_A Probable ATP-dependent 96.9 0.0013 4.4E-08 74.3 7.7 34 207-247 41-74 (228)
124 2oca_A DAR protein, ATP-depend 96.9 0.0015 5.2E-08 82.7 9.2 81 207-294 112-241 (510)
125 2chq_A Replication factor C sm 96.9 0.0013 4.5E-08 77.4 8.1 99 210-312 22-140 (319)
126 3u61_B DNA polymerase accessor 96.9 0.00062 2.1E-08 81.2 5.2 100 209-313 30-145 (324)
127 2v1u_A Cell division control p 96.9 0.00098 3.3E-08 80.6 7.0 46 210-255 24-69 (387)
128 2r2a_A Uncharacterized protein 96.9 0.00098 3.4E-08 74.7 6.4 24 230-253 5-28 (199)
129 3h4m_A Proteasome-activating n 96.9 0.0019 6.3E-08 75.4 9.0 80 209-290 21-122 (285)
130 1tue_A Replication protein E1; 96.9 0.00047 1.6E-08 77.3 3.7 71 214-290 45-115 (212)
131 4abn_A Tetratricopeptide repea 96.8 0.003 1E-07 79.4 11.3 194 1062-1309 99-318 (474)
132 3mkr_A Coatomer subunit epsilo 96.8 0.029 9.9E-07 65.8 19.1 152 1062-1220 98-266 (291)
133 3pvs_A Replication-associated 96.8 0.001 3.5E-08 83.4 7.1 80 231-312 51-140 (447)
134 1njg_A DNA polymerase III subu 96.8 0.0041 1.4E-07 69.1 11.2 43 210-255 28-70 (250)
135 1ofh_A ATP-dependent HSL prote 96.8 0.0016 5.5E-08 76.4 8.3 61 230-292 50-130 (310)
136 2fwr_A DNA repair protein RAD2 96.8 0.0019 6.5E-08 81.0 9.4 81 206-293 91-207 (472)
137 4gcn_A Protein STI-1; structur 96.8 0.0064 2.2E-07 62.1 11.7 96 1066-1189 9-109 (127)
138 2qz4_A Paraplegin; AAA+, SPG7, 96.8 0.0027 9.3E-08 72.8 9.9 80 210-291 11-111 (262)
139 1s2m_A Putative ATP-dependent 96.8 0.0026 8.7E-08 77.5 10.0 35 208-249 43-77 (400)
140 1l8q_A Chromosomal replication 96.8 0.001 3.5E-08 79.4 6.2 81 210-292 19-112 (324)
141 2pl2_A Hypothetical conserved 96.8 0.0098 3.4E-07 66.2 13.9 150 1123-1307 7-175 (217)
142 3bor_A Human initiation factor 96.8 0.0011 3.7E-08 75.7 6.1 34 208-248 52-85 (237)
143 3ly5_A ATP-dependent RNA helic 96.8 0.0013 4.6E-08 76.3 6.8 34 207-247 75-108 (262)
144 4b4t_Q 26S proteasome regulato 96.8 0.01 3.4E-07 72.1 14.8 222 1063-1307 2-240 (434)
145 2hr2_A Hypothetical protein; a 96.8 0.0052 1.8E-07 66.4 10.8 111 1065-1191 11-130 (159)
146 3gyz_A Chaperone protein IPGC; 96.8 0.0045 1.6E-07 65.9 10.3 117 1034-1189 13-130 (151)
147 1sxj_D Activator 1 41 kDa subu 96.7 0.0018 6.1E-08 77.6 7.7 97 212-312 44-171 (353)
148 1t6n_A Probable ATP-dependent 96.7 0.0023 7.8E-08 71.7 8.1 37 208-251 36-72 (220)
149 2kjq_A DNAA-related protein; s 96.7 0.0016 5.3E-08 69.6 6.3 75 208-292 22-97 (149)
150 2yhc_A BAMD, UPF0169 lipoprote 96.7 0.035 1.2E-06 61.8 17.6 66 1063-1147 2-67 (225)
151 3fe2_A Probable ATP-dependent 96.7 0.0018 6.1E-08 74.0 7.0 34 207-247 50-83 (242)
152 3u4t_A TPR repeat-containing p 96.7 0.054 1.8E-06 60.8 19.1 126 1063-1189 35-168 (272)
153 1iqp_A RFCS; clamp loader, ext 96.7 0.0029 9.9E-08 74.7 8.8 99 210-312 30-148 (327)
154 3syl_A Protein CBBX; photosynt 96.7 0.0019 6.5E-08 76.1 7.1 61 230-290 67-142 (309)
155 3pey_A ATP-dependent RNA helic 96.6 0.0016 5.3E-08 78.8 6.4 40 207-251 26-65 (395)
156 2oxc_A Probable ATP-dependent 96.6 0.0024 8.2E-08 72.4 7.5 33 208-247 46-78 (230)
157 2ond_A Cleavage stimulation fa 96.6 0.041 1.4E-06 64.4 18.2 99 1062-1189 47-160 (308)
158 1sxj_C Activator 1 40 kDa subu 96.6 0.0033 1.1E-07 75.6 8.9 109 210-322 30-159 (340)
159 3dkp_A Probable ATP-dependent 96.6 0.0017 5.8E-08 74.1 6.0 34 207-247 50-83 (245)
160 3gw4_A Uncharacterized protein 96.6 0.41 1.4E-05 51.0 24.3 178 1075-1333 2-191 (203)
161 1jr3_A DNA polymerase III subu 96.6 0.0021 7.1E-08 77.6 6.9 43 210-255 21-63 (373)
162 2vq2_A PILW, putative fimbrial 96.6 0.08 2.7E-06 57.1 18.8 182 1121-1334 8-207 (225)
163 1sxj_B Activator 1 37 kDa subu 96.6 0.0033 1.1E-07 74.2 8.3 99 210-312 26-145 (323)
164 1sxj_E Activator 1 40 kDa subu 96.6 0.0037 1.3E-07 75.1 8.8 41 210-254 19-60 (354)
165 1q0u_A Bstdead; DEAD protein, 96.6 0.0015 5.1E-08 73.3 5.0 35 207-248 25-59 (219)
166 3pfi_A Holliday junction ATP-d 96.5 0.0035 1.2E-07 75.0 8.4 84 210-293 34-121 (338)
167 1fuu_A Yeast initiation factor 96.5 0.0021 7.3E-08 77.8 6.5 34 207-247 42-75 (394)
168 3fht_A ATP-dependent RNA helic 96.5 0.0028 9.6E-08 77.2 7.5 37 207-248 46-82 (412)
169 2b8t_A Thymidine kinase; deoxy 96.5 0.0041 1.4E-07 70.9 8.0 82 230-312 12-124 (223)
170 2qby_B CDC6 homolog 3, cell di 96.5 0.0038 1.3E-07 75.6 8.2 45 210-254 25-69 (384)
171 1wp9_A ATP-dependent RNA helic 96.5 0.0037 1.3E-07 77.1 8.2 37 207-251 8-44 (494)
172 1d2n_A N-ethylmaleimide-sensit 96.5 0.003 1E-07 73.4 6.9 60 229-290 63-136 (272)
173 3eiq_A Eukaryotic initiation f 96.4 0.0031 1.1E-07 76.9 7.3 36 207-249 61-96 (414)
174 2qfc_A PLCR protein; TPR, HTH, 96.4 0.082 2.8E-06 61.3 19.0 128 1065-1214 75-221 (293)
175 1wrb_A DJVLGB; RNA helicase, D 96.4 0.0045 1.5E-07 71.0 8.1 34 207-247 44-77 (253)
176 3tbk_A RIG-I helicase domain; 96.4 0.0041 1.4E-07 78.9 8.5 38 207-251 3-40 (555)
177 2j0s_A ATP-dependent RNA helic 96.4 0.0038 1.3E-07 76.4 7.8 36 208-250 59-94 (410)
178 3n70_A Transport activator; si 96.4 0.0028 9.7E-08 66.8 5.6 63 231-293 25-91 (145)
179 2z4s_A Chromosomal replication 96.4 0.0035 1.2E-07 78.4 7.3 63 230-292 130-208 (440)
180 3b9p_A CG5977-PA, isoform A; A 96.4 0.0052 1.8E-07 72.1 8.3 80 210-291 26-126 (297)
181 4a2p_A RIG-I, retinoic acid in 96.4 0.0047 1.6E-07 78.4 8.5 38 207-251 6-43 (556)
182 1fnn_A CDC6P, cell division co 96.3 0.0052 1.8E-07 74.4 8.3 55 210-264 22-80 (389)
183 1xwi_A SKD1 protein; VPS4B, AA 96.3 0.0052 1.8E-07 73.6 8.1 59 231-290 46-117 (322)
184 3as5_A MAMA; tetratricopeptide 96.3 0.047 1.6E-06 56.8 14.4 86 1121-1214 8-101 (186)
185 1gm5_A RECG; helicase, replica 96.3 0.012 4E-07 78.7 11.8 45 206-251 366-410 (780)
186 1hqc_A RUVB; extended AAA-ATPa 96.3 0.0055 1.9E-07 72.6 7.9 82 210-293 17-105 (324)
187 1hz4_A MALT regulatory protein 96.3 0.78 2.7E-05 54.4 26.6 184 1068-1269 56-278 (373)
188 4fcw_A Chaperone protein CLPB; 96.2 0.0057 1.9E-07 72.0 7.8 63 231-293 48-134 (311)
189 2l8b_A Protein TRAI, DNA helic 96.2 0.0069 2.4E-07 66.5 7.6 104 210-318 36-163 (189)
190 1xti_A Probable ATP-dependent 96.2 0.0054 1.8E-07 74.2 7.6 36 207-249 29-64 (391)
191 3eie_A Vacuolar protein sortin 96.2 0.0054 1.8E-07 73.3 7.4 80 210-291 23-123 (322)
192 3t15_A Ribulose bisphosphate c 96.2 0.0035 1.2E-07 74.1 5.8 25 230-254 36-60 (293)
193 3co5_A Putative two-component 96.2 0.0023 7.7E-08 67.5 3.6 60 231-293 28-90 (143)
194 3h1t_A Type I site-specific re 96.2 0.0065 2.2E-07 78.6 8.3 47 206-254 176-222 (590)
195 3fmp_B ATP-dependent RNA helic 96.2 0.0056 1.9E-07 76.9 7.5 37 207-248 113-149 (479)
196 4b4t_J 26S protease regulatory 96.2 0.0037 1.3E-07 77.0 5.6 56 233-290 185-253 (405)
197 2va8_A SSO2462, SKI2-type heli 96.1 0.0036 1.2E-07 82.9 5.8 38 207-250 29-66 (715)
198 2c9o_A RUVB-like 1; hexameric 96.1 0.0086 2.9E-07 75.2 8.8 82 210-291 42-139 (456)
199 1xx6_A Thymidine kinase; NESG, 96.1 0.011 3.6E-07 65.9 8.3 82 230-312 8-116 (191)
200 2ond_A Cleavage stimulation fa 96.1 0.07 2.4E-06 62.4 15.8 144 1062-1217 96-269 (308)
201 3upv_A Heat shock protein STI1 96.1 0.021 7.1E-07 57.1 9.7 98 1065-1192 4-101 (126)
202 4abn_A Tetratricopeptide repea 96.1 0.023 7.8E-07 71.4 12.3 87 1122-1216 103-206 (474)
203 3oiy_A Reverse gyrase helicase 96.1 0.0052 1.8E-07 75.6 6.3 35 207-248 20-54 (414)
204 3u3w_A Transcriptional activat 96.0 0.12 4.1E-06 59.8 17.6 124 1067-1214 77-221 (293)
205 4b4t_M 26S protease regulatory 96.0 0.0042 1.4E-07 77.4 5.3 80 208-289 184-285 (434)
206 2ykg_A Probable ATP-dependent 96.0 0.0097 3.3E-07 78.3 9.1 38 207-251 12-49 (696)
207 3cf0_A Transitional endoplasmi 96.0 0.0066 2.3E-07 71.9 6.7 60 230-291 49-121 (301)
208 4b4t_L 26S protease subunit RP 96.0 0.0047 1.6E-07 77.0 5.6 58 231-290 216-286 (437)
209 2r44_A Uncharacterized protein 96.0 0.0046 1.6E-07 73.9 5.3 77 211-293 33-124 (331)
210 2qp9_X Vacuolar protein sortin 95.9 0.0075 2.6E-07 73.3 7.0 58 232-291 86-156 (355)
211 3vfd_A Spastin; ATPase, microt 95.9 0.015 5.1E-07 71.3 9.7 79 210-290 120-219 (389)
212 4g1t_A Interferon-induced prot 95.9 0.1 3.5E-06 63.9 17.1 24 1166-1189 250-273 (472)
213 2r62_A Cell division protease 95.9 0.0031 1.1E-07 72.9 3.2 60 233-292 47-117 (268)
214 3fmo_B ATP-dependent RNA helic 95.9 0.0053 1.8E-07 72.8 5.2 36 207-247 113-148 (300)
215 2zan_A Vacuolar protein sortin 95.9 0.0093 3.2E-07 74.7 7.4 60 230-290 167-239 (444)
216 2qby_A CDC6 homolog 1, cell di 95.9 0.008 2.7E-07 72.4 6.7 47 210-256 25-71 (386)
217 2h6f_A Protein farnesyltransfe 95.8 0.077 2.6E-06 65.0 15.3 120 1065-1214 97-225 (382)
218 1z63_A Helicase of the SNF2/RA 95.8 0.0089 3E-07 75.5 7.2 109 203-316 32-190 (500)
219 2bjv_A PSP operon transcriptio 95.8 0.013 4.5E-07 67.6 8.0 63 231-293 30-115 (265)
220 1a17_A Serine/threonine protei 95.8 0.041 1.4E-06 56.7 11.1 96 1064-1189 12-107 (166)
221 3ro3_A PINS homolog, G-protein 95.8 0.14 4.7E-06 51.6 14.8 127 1067-1215 11-155 (164)
222 4gl2_A Interferon-induced heli 95.8 0.01 3.5E-07 78.0 7.8 38 207-251 6-43 (699)
223 3d8b_A Fidgetin-like protein 1 95.8 0.01 3.5E-07 72.0 7.2 79 210-290 89-188 (357)
224 1um8_A ATP-dependent CLP prote 95.8 0.009 3.1E-07 72.8 6.7 60 231-292 73-151 (376)
225 3fho_A ATP-dependent RNA helic 95.8 0.0033 1.1E-07 80.0 2.9 80 208-292 141-273 (508)
226 4b4t_K 26S protease regulatory 95.8 0.0067 2.3E-07 75.4 5.5 55 233-289 209-276 (428)
227 2i4i_A ATP-dependent RNA helic 95.8 0.011 3.9E-07 72.1 7.6 34 207-247 36-69 (417)
228 4gyw_A UDP-N-acetylglucosamine 95.8 0.056 1.9E-06 71.7 14.6 118 1122-1268 10-135 (723)
229 2ooe_A Cleavage stimulation fa 95.7 0.3 1E-05 61.5 20.7 32 1062-1093 43-74 (530)
230 4i17_A Hypothetical protein; T 95.7 0.074 2.5E-06 58.6 13.3 127 1122-1269 8-142 (228)
231 2zj8_A DNA helicase, putative 95.7 0.0067 2.3E-07 80.4 5.6 35 207-247 22-56 (720)
232 1hh8_A P67PHOX, NCF-2, neutrop 95.7 0.076 2.6E-06 57.6 13.1 118 1067-1217 8-149 (213)
233 4b4t_I 26S protease regulatory 95.7 0.0069 2.4E-07 74.9 5.1 58 231-290 217-287 (437)
234 4a2q_A RIG-I, retinoic acid in 95.7 0.014 4.8E-07 78.3 8.5 39 206-251 246-284 (797)
235 1in4_A RUVB, holliday junction 95.7 0.012 4E-07 70.9 7.0 82 211-292 31-116 (334)
236 2lni_A Stress-induced-phosphop 95.6 0.028 9.6E-07 55.5 8.5 98 1062-1189 13-110 (133)
237 1lv7_A FTSH; alpha/beta domain 95.6 0.014 4.9E-07 67.0 7.2 24 231-254 46-69 (257)
238 2j9r_A Thymidine kinase; TK1, 95.6 0.023 7.7E-07 64.3 8.5 81 230-311 28-135 (214)
239 2p6r_A Afuhel308 helicase; pro 95.6 0.0037 1.3E-07 82.6 2.6 36 207-249 24-59 (702)
240 2dba_A Smooth muscle cell asso 95.6 0.055 1.9E-06 54.6 10.8 101 1062-1189 25-125 (148)
241 3nbx_X ATPase RAVA; AAA+ ATPas 95.6 0.0086 3E-07 76.0 5.7 24 231-254 42-65 (500)
242 1w4r_A Thymidine kinase; type 95.6 0.017 5.8E-07 64.4 7.2 81 230-311 20-124 (195)
243 2db3_A ATP-dependent RNA helic 95.5 0.018 6.3E-07 71.6 8.3 34 207-247 77-110 (434)
244 3sz7_A HSC70 cochaperone (SGT) 95.5 0.04 1.4E-06 57.9 9.7 96 1064-1189 10-105 (164)
245 3q49_B STIP1 homology and U bo 95.5 0.052 1.8E-06 54.5 10.1 100 1062-1191 6-105 (137)
246 3gw4_A Uncharacterized protein 95.5 0.54 1.8E-05 50.0 18.7 30 1064-1093 25-54 (203)
247 2vgx_A Chaperone SYCD; alterna 95.5 0.043 1.5E-06 57.5 9.7 96 1064-1189 20-115 (148)
248 3u4q_A ATP-dependent helicase/ 95.5 0.018 6E-07 81.0 8.7 70 717-815 9-79 (1232)
249 3vkw_A Replicase large subunit 95.5 0.0037 1.3E-07 77.8 1.7 71 934-1028 351-421 (446)
250 2xcb_A PCRH, regulatory protei 95.5 0.044 1.5E-06 56.4 9.7 95 1065-1189 18-112 (142)
251 3hws_A ATP-dependent CLP prote 95.5 0.0072 2.4E-07 73.4 4.2 25 230-254 51-75 (363)
252 2fo7_A Synthetic consensus TPR 95.5 0.088 3E-06 51.3 11.4 119 1066-1214 2-128 (136)
253 3rkv_A Putative peptidylprolyl 95.4 0.064 2.2E-06 56.2 10.9 111 1065-1189 11-123 (162)
254 3urz_A Uncharacterized protein 95.4 0.07 2.4E-06 58.8 11.7 112 1064-1189 3-114 (208)
255 3i5x_A ATP-dependent RNA helic 95.4 0.019 6.6E-07 73.5 8.2 35 207-246 93-127 (563)
256 4b4t_H 26S protease regulatory 95.4 0.013 4.3E-07 73.3 6.0 81 208-290 212-314 (467)
257 3e4b_A ALGK; tetratricopeptide 95.4 0.23 7.8E-06 61.9 17.5 22 1070-1091 8-29 (452)
258 4a4z_A Antiviral helicase SKI2 95.4 0.016 5.4E-07 79.6 7.5 40 205-251 36-75 (997)
259 3kl4_A SRP54, signal recogniti 95.4 0.027 9.4E-07 70.1 9.0 35 229-263 96-131 (433)
260 1u0j_A DNA replication protein 95.4 0.021 7.1E-07 66.7 7.3 80 207-293 82-163 (267)
261 2r8r_A Sensor protein; KDPD, P 95.3 0.016 5.5E-07 66.0 6.1 33 233-265 9-42 (228)
262 4ga2_A E3 SUMO-protein ligase 95.3 0.046 1.6E-06 57.2 9.3 110 1071-1210 3-120 (150)
263 3sqw_A ATP-dependent RNA helic 95.3 0.022 7.5E-07 73.5 8.2 36 207-247 42-77 (579)
264 4a2w_A RIG-I, retinoic acid in 95.3 0.022 7.6E-07 77.8 8.6 39 206-251 246-284 (936)
265 2xgj_A ATP-dependent RNA helic 95.3 0.017 5.8E-07 79.3 7.3 80 206-292 84-206 (1010)
266 1elr_A TPR2A-domain of HOP; HO 95.2 0.1 3.4E-06 51.0 10.8 97 1065-1189 4-105 (131)
267 1ojl_A Transcriptional regulat 95.1 0.058 2E-06 64.1 10.4 25 230-254 25-49 (304)
268 3dmq_A RNA polymerase-associat 95.1 0.026 8.9E-07 77.3 8.4 41 206-251 151-191 (968)
269 3l9o_A ATP-dependent RNA helic 95.1 0.016 5.3E-07 80.4 6.2 82 205-293 181-305 (1108)
270 1elw_A TPR1-domain of HOP; HOP 95.1 0.068 2.3E-06 51.2 9.0 96 1064-1189 3-98 (118)
271 3dm5_A SRP54, signal recogniti 95.0 0.034 1.2E-06 69.4 8.2 35 229-263 99-134 (443)
272 3rjv_A Putative SEL1 repeat pr 95.0 0.64 2.2E-05 51.3 17.8 123 1062-1189 15-155 (212)
273 2ce7_A Cell division protein F 95.0 0.033 1.1E-06 70.3 8.2 57 232-290 51-120 (476)
274 2eyq_A TRCF, transcription-rep 95.0 0.043 1.5E-06 76.4 9.9 42 206-248 601-642 (1151)
275 3pxg_A Negative regulator of g 94.9 0.08 2.7E-06 66.7 11.4 41 211-255 186-226 (468)
276 1g5t_A COB(I)alamin adenosyltr 94.9 0.056 1.9E-06 60.3 8.7 84 230-313 28-162 (196)
277 3qou_A Protein YBBN; thioredox 94.8 0.14 4.9E-06 59.5 12.5 130 1062-1213 114-279 (287)
278 2ooe_A Cleavage stimulation fa 94.7 0.52 1.8E-05 59.4 18.2 195 1062-1307 269-487 (530)
279 2vsy_A XCC0866; transferase, g 94.7 0.17 5.7E-06 64.6 13.8 123 1062-1214 20-153 (568)
280 4ga2_A E3 SUMO-protein ligase 94.7 0.05 1.7E-06 57.0 7.3 92 1065-1186 31-122 (150)
281 4b4t_Q 26S proteasome regulato 94.6 0.18 6.2E-06 60.9 13.2 19 1142-1160 12-30 (434)
282 3hu3_A Transitional endoplasmi 94.6 0.029 9.8E-07 71.2 6.3 79 210-290 209-309 (489)
283 1g8p_A Magnesium-chelatase 38 94.6 0.038 1.3E-06 66.0 7.1 23 232-254 47-69 (350)
284 3pxi_A Negative regulator of g 94.6 0.034 1.2E-06 74.2 7.1 62 232-293 523-594 (758)
285 1p5q_A FKBP52, FK506-binding p 94.5 0.097 3.3E-06 62.6 10.4 110 1065-1189 147-256 (336)
286 1w5s_A Origin recognition comp 94.5 0.026 8.9E-07 68.9 5.5 45 212-256 29-78 (412)
287 1ixz_A ATP-dependent metallopr 94.5 0.033 1.1E-06 63.9 6.0 22 233-254 52-73 (254)
288 4ddu_A Reverse gyrase; topoiso 94.5 0.037 1.3E-06 76.6 7.3 37 207-250 77-113 (1104)
289 1r6b_X CLPA protein; AAA+, N-t 94.4 0.11 3.7E-06 69.3 11.5 41 210-254 191-231 (758)
290 3ro3_A PINS homolog, G-protein 94.4 0.76 2.6E-05 46.1 15.3 62 1122-1189 10-75 (164)
291 2fo7_A Synthetic consensus TPR 94.4 0.57 1.9E-05 45.3 13.9 82 1124-1213 4-93 (136)
292 2vhj_A Ntpase P4, P4; non- hyd 94.4 0.02 6.9E-07 68.4 3.8 24 230-253 123-146 (331)
293 3qky_A Outer membrane assembly 94.4 0.17 5.9E-06 57.1 11.4 28 1065-1092 52-79 (261)
294 1ihg_A Cyclophilin 40; ppiase 94.3 0.16 5.3E-06 61.9 11.6 111 1065-1189 223-333 (370)
295 2vsy_A XCC0866; transferase, g 94.3 0.19 6.6E-06 64.0 13.0 107 1078-1214 2-116 (568)
296 1r6b_X CLPA protein; AAA+, N-t 94.3 0.046 1.6E-06 72.9 7.4 60 232-293 490-572 (758)
297 2vyi_A SGTA protein; chaperone 94.3 0.15 5E-06 49.7 9.3 96 1064-1189 11-106 (131)
298 2qfc_A PLCR protein; TPR, HTH, 94.2 0.42 1.4E-05 55.2 14.6 102 1069-1192 119-225 (293)
299 1hxi_A PEX5, peroxisome target 94.2 0.099 3.4E-06 52.7 8.1 93 1067-1189 19-111 (121)
300 2fbn_A 70 kDa peptidylprolyl i 94.1 0.16 5.3E-06 55.1 10.1 111 1065-1189 38-148 (198)
301 2h6f_A Protein farnesyltransfe 94.1 0.37 1.3E-05 59.0 14.4 98 1062-1189 128-226 (382)
302 2xev_A YBGF; tetratricopeptide 94.1 0.12 4E-06 51.2 8.2 99 1066-1189 3-102 (129)
303 3m6a_A ATP-dependent protease 94.1 0.055 1.9E-06 69.5 7.2 26 229-254 107-132 (543)
304 2v1x_A ATP-dependent DNA helic 94.0 0.061 2.1E-06 69.8 7.6 34 207-247 43-76 (591)
305 1vma_A Cell division protein F 94.0 0.076 2.6E-06 63.3 7.7 35 229-263 103-138 (306)
306 1iy2_A ATP-dependent metallopr 93.9 0.05 1.7E-06 63.4 5.9 22 233-254 76-97 (278)
307 3n71_A Histone lysine methyltr 93.9 0.27 9.2E-06 62.3 13.0 101 1070-1190 314-420 (490)
308 1qvr_A CLPB protein; coiled co 93.9 0.063 2.2E-06 72.6 7.7 77 211-291 176-276 (854)
309 2yhc_A BAMD, UPF0169 lipoprote 93.9 0.2 6.8E-06 55.7 10.5 150 1065-1217 41-212 (225)
310 2v3c_C SRP54, signal recogniti 93.9 0.075 2.6E-06 66.3 7.7 34 230-263 99-133 (432)
311 1oyw_A RECQ helicase, ATP-depe 93.9 0.049 1.7E-06 69.6 6.2 34 207-247 24-57 (523)
312 2orv_A Thymidine kinase; TP4A 93.8 0.069 2.4E-06 61.0 6.6 82 230-311 19-123 (234)
313 3e2i_A Thymidine kinase; Zn-bi 93.8 0.11 3.8E-06 58.7 8.2 81 230-311 28-135 (219)
314 2kck_A TPR repeat; tetratricop 93.8 0.038 1.3E-06 52.6 3.9 98 1064-1189 5-103 (112)
315 3pxi_A Negative regulator of g 93.8 0.18 6E-06 67.3 11.5 41 210-254 185-225 (758)
316 2c2l_A CHIP, carboxy terminus 93.8 0.2 6.7E-06 58.2 10.5 98 1064-1191 3-100 (281)
317 1kt0_A FKBP51, 51 kDa FK506-bi 93.7 0.18 6.2E-06 63.0 10.9 112 1065-1191 268-379 (457)
318 1qvr_A CLPB protein; coiled co 93.7 0.064 2.2E-06 72.6 7.2 63 231-293 589-675 (854)
319 3u3w_A Transcriptional activat 93.7 1.6 5.5E-05 50.2 18.2 128 1122-1269 76-221 (293)
320 1na0_A Designed protein CTPR3; 93.7 0.2 6.8E-06 48.3 8.9 96 1064-1189 8-103 (125)
321 2r5s_A Uncharacterized protein 93.7 0.27 9.1E-06 52.3 10.6 48 1166-1213 111-168 (176)
322 2r5s_A Uncharacterized protein 93.6 0.2 6.9E-06 53.3 9.6 125 1062-1189 37-170 (176)
323 3cf2_A TER ATPase, transitiona 93.6 0.042 1.4E-06 73.3 4.9 58 231-290 239-309 (806)
324 1hh8_A P67PHOX, NCF-2, neutrop 93.5 0.88 3E-05 49.0 14.5 83 1124-1217 9-99 (213)
325 3e4b_A ALGK; tetratricopeptide 93.4 2.4 8.2E-05 52.6 20.3 137 1064-1214 68-242 (452)
326 2dhr_A FTSH; AAA+ protein, hex 93.3 0.084 2.9E-06 67.0 6.9 22 233-254 67-88 (499)
327 2xau_A PRE-mRNA-splicing facto 93.3 0.055 1.9E-06 72.3 5.3 36 210-251 95-130 (773)
328 2pzi_A Probable serine/threoni 93.3 0.27 9.3E-06 64.6 11.8 158 1065-1269 394-559 (681)
329 2zr9_A Protein RECA, recombina 92.9 0.12 4.1E-06 62.7 7.2 35 230-264 61-96 (349)
330 4f92_B U5 small nuclear ribonu 92.9 0.11 3.6E-06 75.1 7.6 37 207-249 925-961 (1724)
331 3jvv_A Twitching mobility prot 92.7 0.13 4.5E-06 62.5 7.1 27 230-256 123-149 (356)
332 2pzi_A Probable serine/threoni 92.7 0.43 1.5E-05 62.7 12.6 123 1062-1215 430-560 (681)
333 3qww_A SET and MYND domain-con 92.7 0.45 1.6E-05 59.3 12.0 94 1077-1190 310-409 (433)
334 1vec_A ATP-dependent RNA helic 92.6 0.4 1.4E-05 52.6 10.3 84 695-817 9-95 (206)
335 4gco_A Protein STI-1; structur 92.5 0.54 1.9E-05 47.6 10.4 94 1115-1217 8-109 (126)
336 1u94_A RECA protein, recombina 92.4 0.16 5.4E-06 61.8 7.2 36 230-265 63-99 (356)
337 2w00_A HSDR, R.ECOR124I; ATP-b 92.4 0.19 6.5E-06 69.0 8.7 44 208-251 271-321 (1038)
338 3cmu_A Protein RECA, recombina 92.3 0.13 4.4E-06 74.2 7.1 37 230-266 1427-1464(2050)
339 2gxq_A Heat resistant RNA depe 92.3 0.52 1.8E-05 51.6 10.7 86 695-816 7-95 (207)
340 1gku_B Reverse gyrase, TOP-RG; 92.2 0.091 3.1E-06 72.6 5.3 33 208-248 57-89 (1054)
341 2px0_A Flagellar biosynthesis 92.2 0.26 8.7E-06 58.5 8.4 36 229-264 104-141 (296)
342 3cf2_A TER ATPase, transitiona 92.1 0.056 1.9E-06 72.1 2.9 80 209-290 481-582 (806)
343 3hr8_A Protein RECA; alpha and 92.1 0.15 5.3E-06 61.9 6.5 34 230-263 61-95 (356)
344 2e2e_A Formate-dependent nitri 92.1 0.34 1.2E-05 51.0 8.6 98 1062-1189 41-141 (177)
345 1a17_A Serine/threonine protei 92.0 1.6 5.3E-05 44.6 13.3 87 1123-1217 15-109 (166)
346 3qwp_A SET and MYND domain-con 91.9 0.67 2.3E-05 57.7 12.2 101 1070-1190 292-398 (429)
347 3mwy_W Chromo domain-containin 91.9 0.21 7.2E-06 67.0 8.3 43 206-251 234-276 (800)
348 2x8a_A Nuclear valosin-contain 91.7 0.073 2.5E-06 62.3 3.0 22 233-254 47-68 (274)
349 3gyz_A Chaperone protein IPGC; 91.3 1 3.5E-05 47.6 11.2 95 1113-1216 29-131 (151)
350 3qou_A Protein YBBN; thioredox 91.2 2 6.9E-05 49.7 14.6 60 1123-1190 119-178 (287)
351 3llm_A ATP-dependent RNA helic 91.2 0.43 1.5E-05 54.1 8.6 71 715-815 58-131 (235)
352 3dkp_A Probable ATP-dependent 91.1 0.56 1.9E-05 53.1 9.6 87 692-816 32-121 (245)
353 1v5w_A DMC1, meiotic recombina 91.1 0.23 7.9E-06 60.0 6.7 38 229-266 121-165 (343)
354 1xp8_A RECA protein, recombina 91.1 0.27 9.2E-06 60.0 7.3 36 230-265 74-110 (366)
355 1gvn_B Zeta; postsegregational 91.1 0.16 5.6E-06 59.7 5.2 26 229-254 32-57 (287)
356 2if4_A ATFKBP42; FKBP-like, al 91.1 0.21 7.3E-06 59.7 6.3 115 1065-1192 179-293 (338)
357 3crv_A XPD/RAD3 related DNA he 91.0 0.36 1.2E-05 61.9 8.7 37 208-247 3-39 (551)
358 4f3v_A ESX-1 secretion system 91.0 1 3.5E-05 53.0 11.8 124 1062-1214 99-233 (282)
359 3urz_A Uncharacterized protein 91.0 0.61 2.1E-05 51.2 9.4 55 1071-1147 60-114 (208)
360 3iuy_A Probable ATP-dependent 91.0 0.55 1.9E-05 52.6 9.2 90 694-816 25-117 (228)
361 1t6n_A Probable ATP-dependent 90.8 0.78 2.7E-05 50.9 10.2 83 695-817 20-106 (220)
362 1z3i_X Similar to RAD54-like; 90.8 0.48 1.6E-05 62.1 9.6 49 206-254 53-103 (644)
363 3io5_A Recombination and repai 90.6 0.29 1E-05 58.5 6.7 36 230-265 28-66 (333)
364 2xxa_A Signal recognition part 90.6 0.41 1.4E-05 59.8 8.3 35 230-264 100-136 (433)
365 1ly1_A Polynucleotide kinase; 90.6 0.12 4.2E-06 55.2 3.3 22 231-252 3-24 (181)
366 1ypw_A Transitional endoplasmi 90.5 0.15 5E-06 68.6 4.5 60 230-291 238-310 (806)
367 2lni_A Stress-induced-phosphop 90.4 1.2 4.2E-05 43.4 10.1 88 1120-1215 15-110 (133)
368 3upv_A Heat shock protein STI1 90.4 1 3.4E-05 44.6 9.6 84 1123-1214 6-97 (126)
369 1qhx_A CPT, protein (chloramph 90.3 0.15 5.1E-06 54.8 3.5 25 230-254 3-27 (178)
370 3lw7_A Adenylate kinase relate 90.2 0.13 4.6E-06 54.2 3.1 20 231-250 2-21 (179)
371 3sz7_A HSC70 cochaperone (SGT) 90.2 1.1 3.8E-05 46.7 10.2 89 1121-1217 11-107 (164)
372 3ec2_A DNA replication protein 90.1 0.12 4.2E-06 55.9 2.7 19 730-748 38-56 (180)
373 3kb2_A SPBC2 prophage-derived 90.1 0.17 5.8E-06 53.7 3.8 23 232-254 3-25 (173)
374 4gcn_A Protein STI-1; structur 90.1 1 3.6E-05 45.4 9.6 84 1123-1214 10-108 (127)
375 2j37_W Signal recognition part 90.1 0.38 1.3E-05 61.1 7.5 34 230-263 101-135 (504)
376 3bor_A Human initiation factor 90.1 0.7 2.4E-05 52.2 9.1 82 695-816 36-121 (237)
377 3ma5_A Tetratricopeptide repea 90.1 1.5 5.1E-05 42.2 10.2 63 1063-1147 5-67 (100)
378 1zp6_A Hypothetical protein AT 90.1 0.15 5E-06 55.5 3.3 24 230-253 9-32 (191)
379 1wao_1 Serine/threonine protei 89.8 0.058 2E-06 68.0 -0.2 93 1067-1189 8-100 (477)
380 2ewv_A Twitching motility prot 89.7 0.39 1.3E-05 58.7 7.0 27 230-256 136-162 (372)
381 3lvg_A Clathrin heavy chain 1; 89.6 0.00012 4E-09 90.2 -23.6 221 1062-1304 51-325 (624)
382 3fe2_A Probable ATP-dependent 89.6 1.1 3.6E-05 50.9 10.1 90 695-818 35-127 (242)
383 4g26_A Pentatricopeptide repea 89.5 1.8 6.3E-05 54.8 13.2 150 1062-1217 22-203 (501)
384 3co5_A Putative two-component 89.5 0.15 5E-06 53.5 2.7 20 728-747 25-44 (143)
385 3n70_A Transport activator; si 89.4 0.17 5.9E-06 53.0 3.1 20 729-748 23-42 (145)
386 1q0u_A Bstdead; DEAD protein, 89.4 1.1 3.8E-05 49.8 9.9 85 695-818 10-97 (219)
387 3b6e_A Interferon-induced heli 89.3 0.68 2.3E-05 50.8 8.0 74 715-817 30-107 (216)
388 2z83_A Helicase/nucleoside tri 89.3 0.41 1.4E-05 60.0 6.9 25 230-254 21-46 (459)
389 2vyi_A SGTA protein; chaperone 89.3 2.8 9.7E-05 40.3 11.7 86 1122-1215 13-106 (131)
390 2rhm_A Putative kinase; P-loop 89.2 0.21 7.2E-06 54.1 3.8 25 230-254 5-29 (193)
391 3o8b_A HCV NS3 protease/helica 89.2 0.17 5.8E-06 66.2 3.4 63 230-292 232-332 (666)
392 1kht_A Adenylate kinase; phosp 89.1 0.22 7.6E-06 53.7 3.9 25 231-255 4-28 (192)
393 3n71_A Histone lysine methyltr 89.1 0.79 2.7E-05 58.0 9.4 104 1066-1189 352-461 (490)
394 1j8m_F SRP54, signal recogniti 89.0 0.71 2.4E-05 54.7 8.4 34 230-263 98-132 (297)
395 1ypw_A Transitional endoplasmi 89.0 0.085 2.9E-06 70.9 0.4 25 230-254 511-535 (806)
396 2p5t_B PEZT; postsegregational 88.8 0.27 9.4E-06 56.5 4.5 26 229-254 31-56 (253)
397 1qde_A EIF4A, translation init 88.8 0.91 3.1E-05 50.5 8.7 83 695-816 20-105 (224)
398 3trf_A Shikimate kinase, SK; a 88.8 0.25 8.5E-06 53.4 3.9 25 230-254 5-29 (185)
399 2xcb_A PCRH, regulatory protei 88.8 1.8 6E-05 44.2 10.2 86 1123-1216 20-113 (142)
400 3ber_A Probable ATP-dependent 88.7 1.3 4.3E-05 50.8 10.0 84 695-817 49-135 (249)
401 3tau_A Guanylate kinase, GMP k 88.6 0.24 8.3E-06 55.1 3.8 25 230-254 8-32 (208)
402 1nks_A Adenylate kinase; therm 88.6 0.22 7.6E-06 53.7 3.4 24 232-255 3-26 (194)
403 1jbk_A CLPB protein; beta barr 88.6 0.17 5.7E-06 54.0 2.3 19 730-748 43-61 (195)
404 1p9r_A General secretion pathw 88.6 0.48 1.6E-05 58.8 6.7 44 208-256 150-193 (418)
405 2oxc_A Probable ATP-dependent 88.6 1.5 5.1E-05 49.2 10.3 83 695-817 30-116 (230)
406 1p5q_A FKBP52, FK506-binding p 88.5 1.5 5.2E-05 52.2 10.9 90 1123-1214 149-255 (336)
407 3rjv_A Putative SEL1 repeat pr 88.5 15 0.00051 40.2 18.3 20 1350-1369 180-199 (212)
408 2dr3_A UPF0273 protein PH0284; 88.5 0.36 1.2E-05 54.3 5.1 35 230-264 23-58 (247)
409 1kag_A SKI, shikimate kinase I 88.5 0.22 7.5E-06 53.2 3.2 23 231-253 5-27 (173)
410 2wsm_A Hydrogenase expression/ 88.5 0.91 3.1E-05 50.3 8.3 43 211-257 15-57 (221)
411 3cmu_A Protein RECA, recombina 88.4 0.43 1.5E-05 69.0 6.9 38 230-267 1081-1119(2050)
412 4f92_B U5 small nuclear ribonu 88.4 0.33 1.1E-05 70.1 5.8 67 715-815 924-994 (1724)
413 3mv2_B Coatomer subunit epsilo 88.4 30 0.001 41.1 21.6 129 1063-1216 98-238 (310)
414 2w58_A DNAI, primosome compone 88.3 0.18 6.1E-06 55.5 2.4 18 731-748 55-72 (202)
415 4g26_A Pentatricopeptide repea 88.2 6.2 0.00021 50.0 16.7 23 1124-1146 29-51 (501)
416 2plr_A DTMP kinase, probable t 88.2 0.28 9.7E-06 53.9 3.9 25 230-254 4-28 (213)
417 3iij_A Coilin-interacting nucl 88.2 0.27 9.3E-06 53.0 3.7 25 230-254 11-35 (180)
418 3f9v_A Minichromosome maintena 88.1 0.099 3.4E-06 67.9 0.2 21 232-252 329-349 (595)
419 1s2m_A Putative ATP-dependent 88.1 1.4 4.7E-05 53.3 10.3 84 695-817 27-113 (400)
420 3rkv_A Putative peptidylprolyl 88.1 2.4 8.1E-05 44.0 10.8 96 1122-1217 12-125 (162)
421 3cmw_A Protein RECA, recombina 88.1 0.51 1.7E-05 67.4 7.2 64 230-293 34-127 (1706)
422 1ihg_A Cyclophilin 40; ppiase 88.0 2.2 7.4E-05 51.8 12.0 91 1124-1216 226-334 (370)
423 3p32_A Probable GTPase RV1496/ 88.0 1.8 6.1E-05 52.4 11.1 26 229-254 78-103 (355)
424 1elw_A TPR1-domain of HOP; HOP 87.9 2.9 9.8E-05 39.5 10.5 87 1123-1217 6-100 (118)
425 3k9i_A BH0479 protein; putativ 87.9 0.64 2.2E-05 45.9 6.0 85 1078-1189 3-87 (117)
426 1ex7_A Guanylate kinase; subst 87.9 0.21 7.2E-06 55.2 2.6 18 730-747 1-18 (186)
427 1lv7_A FTSH; alpha/beta domain 87.8 0.2 6.8E-06 57.4 2.5 20 729-748 44-63 (257)
428 1tev_A UMP-CMP kinase; ploop, 87.8 0.3 1E-05 52.8 3.8 25 230-254 3-27 (196)
429 2xev_A YBGF; tetratricopeptide 87.7 3.5 0.00012 40.3 11.3 84 1126-1217 7-104 (129)
430 2vgx_A Chaperone SYCD; alterna 87.7 2.2 7.4E-05 44.3 10.2 88 1122-1217 22-117 (148)
431 2www_A Methylmalonic aciduria 87.7 0.72 2.5E-05 55.8 7.4 25 230-254 74-98 (349)
432 1na0_A Designed protein CTPR3; 87.7 2.2 7.4E-05 40.7 9.6 87 1122-1216 10-104 (125)
433 3vaa_A Shikimate kinase, SK; s 87.6 0.33 1.1E-05 53.5 4.0 25 230-254 25-49 (199)
434 1knq_A Gluconate kinase; ALFA/ 87.5 0.32 1.1E-05 52.2 3.7 25 230-254 8-32 (175)
435 1zu4_A FTSY; GTPase, signal re 87.4 1.1 3.8E-05 53.6 8.7 24 230-253 105-128 (320)
436 4eun_A Thermoresistant glucoki 87.4 0.3 1E-05 53.9 3.5 25 230-254 29-53 (200)
437 2pl3_A Probable ATP-dependent 87.4 1.3 4.4E-05 49.8 8.9 87 695-816 31-120 (236)
438 1n0w_A DNA repair protein RAD5 87.4 0.46 1.6E-05 53.4 5.1 25 230-254 24-48 (243)
439 2bdt_A BH3686; alpha-beta prot 87.3 0.28 9.7E-06 53.3 3.2 22 231-252 3-24 (189)
440 2cdn_A Adenylate kinase; phosp 87.2 0.38 1.3E-05 52.9 4.2 24 231-254 21-44 (201)
441 2c95_A Adenylate kinase 1; tra 87.2 0.35 1.2E-05 52.5 3.9 25 230-254 9-33 (196)
442 2qz4_A Paraplegin; AAA+, SPG7, 87.2 0.22 7.7E-06 56.7 2.4 20 729-748 38-57 (262)
443 2qen_A Walker-type ATPase; unk 87.2 0.48 1.6E-05 56.0 5.3 38 211-254 18-55 (350)
444 3kb2_A SPBC2 prophage-derived 87.1 0.22 7.6E-06 52.8 2.2 16 733-748 4-19 (173)
445 3tr0_A Guanylate kinase, GMP k 87.1 0.34 1.1E-05 53.1 3.7 24 230-253 7-30 (205)
446 2cvh_A DNA repair and recombin 87.0 0.34 1.2E-05 53.6 3.7 33 229-263 19-51 (220)
447 2j41_A Guanylate kinase; GMP, 87.0 0.34 1.2E-05 53.1 3.7 25 230-254 6-30 (207)
448 2kck_A TPR repeat; tetratricop 87.0 3.4 0.00012 38.7 10.4 86 1124-1217 9-105 (112)
449 1qf9_A UMP/CMP kinase, protein 87.0 0.38 1.3E-05 51.9 3.9 25 230-254 6-30 (194)
450 2fbn_A 70 kDa peptidylprolyl i 86.9 0.72 2.5E-05 49.8 6.2 24 1166-1189 41-64 (198)
451 2z0h_A DTMP kinase, thymidylat 86.9 0.47 1.6E-05 51.6 4.7 23 232-254 2-24 (197)
452 3ly5_A ATP-dependent RNA helic 86.9 1.7 5.7E-05 50.1 9.6 86 696-816 61-149 (262)
453 2yvu_A Probable adenylyl-sulfa 86.9 0.43 1.5E-05 51.8 4.3 27 229-255 12-38 (186)
454 1hv8_A Putative ATP-dependent 86.9 1.1 3.7E-05 53.1 8.2 83 695-817 12-98 (367)
455 2w0m_A SSO2452; RECA, SSPF, un 86.7 0.34 1.2E-05 53.8 3.5 34 230-263 23-57 (235)
456 2dba_A Smooth muscle cell asso 86.7 1.8 6.2E-05 43.2 8.7 91 1122-1217 29-127 (148)
457 1w36_B RECB, exodeoxyribonucle 86.7 0.24 8.1E-06 69.4 2.7 85 277-368 376-463 (1180)
458 2fz4_A DNA repair protein RAD2 86.7 0.87 3E-05 51.9 7.0 40 713-752 88-130 (237)
459 2e2e_A Formate-dependent nitri 86.7 1.3 4.4E-05 46.5 7.9 24 1166-1189 47-70 (177)
460 3q49_B STIP1 homology and U bo 86.7 3.7 0.00013 40.6 10.9 85 1122-1214 10-102 (137)
461 3t61_A Gluconokinase; PSI-biol 86.7 0.35 1.2E-05 53.3 3.5 25 230-254 18-42 (202)
462 2p65_A Hypothetical protein PF 86.6 0.2 6.8E-06 53.4 1.5 19 730-748 43-61 (187)
463 3umf_A Adenylate kinase; rossm 86.6 0.4 1.4E-05 54.3 4.0 25 230-254 29-53 (217)
464 1kgd_A CASK, peripheral plasma 86.6 0.38 1.3E-05 52.3 3.7 25 230-254 5-29 (180)
465 2iyv_A Shikimate kinase, SK; t 86.6 0.35 1.2E-05 52.2 3.4 24 231-254 3-26 (184)
466 2ze6_A Isopentenyl transferase 86.5 0.32 1.1E-05 56.1 3.2 23 232-254 3-25 (253)
467 1y63_A LMAJ004144AAA protein; 86.5 0.37 1.3E-05 52.5 3.5 24 230-253 10-33 (184)
468 1nn5_A Similar to deoxythymidy 86.5 0.4 1.4E-05 52.9 3.9 25 230-254 9-33 (215)
469 3cm0_A Adenylate kinase; ATP-b 86.5 0.33 1.1E-05 52.4 3.2 24 231-254 5-28 (186)
470 1ls1_A Signal recognition part 86.4 0.97 3.3E-05 53.4 7.4 24 230-253 98-121 (295)
471 2jlq_A Serine protease subunit 86.4 0.42 1.4E-05 59.8 4.4 22 230-251 19-41 (451)
472 2bwj_A Adenylate kinase 5; pho 86.3 0.38 1.3E-05 52.3 3.6 25 230-254 12-36 (199)
473 1ex7_A Guanylate kinase; subst 86.3 0.22 7.5E-06 55.1 1.6 23 232-254 3-25 (186)
474 2qor_A Guanylate kinase; phosp 86.3 0.36 1.2E-05 53.5 3.3 25 230-254 12-36 (204)
475 1wrb_A DJVLGB; RNA helicase, D 86.3 1.4 4.7E-05 50.2 8.3 77 718-817 45-124 (253)
476 3oiy_A Reverse gyrase helicase 86.2 0.96 3.3E-05 55.3 7.5 67 715-816 18-87 (414)
477 3a00_A Guanylate kinase, GMP k 86.2 0.3 1E-05 53.3 2.6 18 730-747 1-18 (186)
478 3uie_A Adenylyl-sulfate kinase 86.1 0.47 1.6E-05 52.3 4.2 26 230-255 25-50 (200)
479 2ehv_A Hypothetical protein PH 86.1 0.38 1.3E-05 54.3 3.5 23 230-252 30-52 (251)
480 2wwf_A Thymidilate kinase, put 86.1 0.42 1.4E-05 52.7 3.8 25 230-254 10-34 (212)
481 1via_A Shikimate kinase; struc 86.1 0.39 1.3E-05 51.6 3.4 23 232-254 6-28 (175)
482 1qhx_A CPT, protein (chloramph 86.0 0.29 1E-05 52.4 2.4 17 731-747 4-20 (178)
483 1aky_A Adenylate kinase; ATP:A 85.9 0.46 1.6E-05 53.1 4.0 25 230-254 4-28 (220)
484 1kag_A SKI, shikimate kinase I 85.9 0.32 1.1E-05 51.9 2.6 22 731-754 5-26 (173)
485 1ye8_A Protein THEP1, hypothet 85.9 0.38 1.3E-05 52.6 3.2 22 233-254 3-24 (178)
486 1l8q_A Chromosomal replication 85.8 0.34 1.2E-05 57.5 3.0 19 730-748 37-55 (324)
487 2qm8_A GTPase/ATPase; G protei 85.7 0.78 2.7E-05 55.2 6.2 26 229-254 54-79 (337)
488 3fb4_A Adenylate kinase; psych 85.7 0.44 1.5E-05 52.9 3.7 22 233-254 3-24 (216)
489 2fna_A Conserved hypothetical 85.7 0.49 1.7E-05 56.0 4.3 36 211-254 19-54 (357)
490 2vli_A Antibiotic resistance p 85.7 0.34 1.2E-05 52.1 2.7 24 230-253 5-28 (183)
491 3trf_A Shikimate kinase, SK; a 85.6 0.32 1.1E-05 52.6 2.4 18 731-748 6-23 (185)
492 4a4z_A Antiviral helicase SKI2 85.6 1.1 3.6E-05 61.7 8.1 41 714-754 35-78 (997)
493 2bjv_A PSP operon transcriptio 85.5 0.37 1.3E-05 55.4 3.1 19 729-747 28-46 (265)
494 3t61_A Gluconokinase; PSI-biol 85.5 0.33 1.1E-05 53.5 2.5 19 730-748 18-36 (202)
495 3h4m_A Proteasome-activating n 85.5 0.3 1E-05 56.6 2.3 19 729-747 50-68 (285)
496 2l6j_A TPR repeat-containing p 85.5 1.2 4.2E-05 42.3 6.3 63 1064-1148 3-65 (111)
497 1elr_A TPR2A-domain of HOP; HO 85.4 3.5 0.00012 39.7 9.8 84 1123-1214 6-104 (131)
498 3lw7_A Adenylate kinase relate 85.4 0.31 1.1E-05 51.4 2.2 16 733-748 4-19 (179)
499 3dl0_A Adenylate kinase; phosp 85.4 0.38 1.3E-05 53.5 3.0 22 233-254 3-24 (216)
500 3pey_A ATP-dependent RNA helic 85.4 2.5 8.4E-05 50.6 10.4 84 695-817 11-99 (395)
No 1
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=100.00 E-value=4.7e-53 Score=552.62 Aligned_cols=437 Identities=24% Similarity=0.242 Sum_probs=337.2
Q ss_pred cChHHHHHHcHhHHHHHHHHHHHHhHhhhhcCCchhhccccccCCCCceeEeEEEeeeecccCCC--------------C
Q 035724 9 QSVNRYFESFVFPLLEETRAQLSSSMEKISEAPFAQVVDLEDSKPYGAMLSDVKVDYWRNRFSNY--------------S 74 (1939)
Q Consensus 9 ~S~~eY~~sF~~pLieE~rAel~Ss~e~is~ap~~ei~~~~~~~~~g~~ly~l~v~~~rtgl~g~--------------~ 74 (1939)
.|+++|++.|..+|..|+++|+....+.+...+..+.. +.|.+++++.+...++|++|+ .
T Consensus 2 ~~~~~~~~~~~~Ll~~E~~~e~~~~~~~~~~~~~~~~~------~~G~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~ 75 (646)
T 4b3f_X 2 AAVESFVTKQLDLLELERDAEVEERRSWQENISLKELQ------SRGVCLLKLQVSSQRTGLYGRLLVTFEPRRYGSAAA 75 (646)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHG------GGTSEEEEEEEEEEEECSSSCEEEEEEESCC---CC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH------hCCceecceEEEEEEecCCCeEEEEEEecCCCCCCC
Confidence 36899999999999999999999999999888877743 568999999999999988764 3
Q ss_pred cCCCCCCCCcEEEEecCCCCCchhhhhcccceeEEEEEeeccCCCCCCCccceEEEEecccccc---cCCCccEEEEEec
Q 035724 75 KESYKVLPGDILVLADAKPETASDLRRVGRMWTFVSVTKVTEDKNESDTTSTSFKVKASKENQI---DGANKSLFAIFLT 151 (1939)
Q Consensus 75 ~~~y~~~~GDIV~Ls~~kp~~~sDl~r~g~~~~~gvV~kv~~d~~e~~~~~~~~~v~~sk~~~~---~~~~~~l~vv~l~ 151 (1939)
.+.+.+++||+|+|++..+.. .....|+|++++.+ .+.|.+...... ......+.+.++.
T Consensus 76 l~~~~~~~Gd~v~~~~~~~~~--------~~~~~g~v~~~~~~---------~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 138 (646)
T 4b3f_X 76 LPSNSFTSGDIVGLYDAANEG--------SQLATGILTRVTQK---------SVTVAFDESHDFQLSLDRENSYRLLKLA 138 (646)
T ss_dssp CCCCCCCTTCEEEEEETTTTS--------CCCEEEEEEEEETT---------EEEEECC-------CCCSSCCEEEEEEC
T ss_pred CccCCCCCCCEEEEEecCCCC--------CceEEEEEEEEeCC---------EEEEEECCccccccccCCCCcEEEEEec
Confidence 457789999999999866542 24567999999874 577777654332 2234578999999
Q ss_pred ccccHHHHHHHHHhccC------hhHHHHhhcCCCCcccccccCCCcCCCccccccCCCCCCCCCHHHHHHHHHHHhccc
Q 035724 152 NVTSNTRIWNSLHMSGN------LKIIKELLCTDSVVKEDCELCPVQSDGIWNDIFGPSLSSTLNDSQAQAVLSCLRRTH 225 (1939)
Q Consensus 152 N~~t~~R~~~AL~~~~~------~~ii~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LN~sQ~~AV~~~L~~~~ 225 (1939)
|.+||+||++||..+.. ..+.+.+++..++.. ...... ....+..||++|++||..+++.
T Consensus 139 ~~~~~~r~~~al~~l~~~~~~~~~~l~~~l~~~~~p~~---------~~~~~~---~~~~~~~LN~~Q~~AV~~al~~-- 204 (646)
T 4b3f_X 139 NDVTYRRLKKALIALKKYHSGPASSLIEVLFGRSAPSP---------ASEIHP---LTFFNTCLDTSQKEAVLFALSQ-- 204 (646)
T ss_dssp CHHHHHHHHHHHHHHHTCCSSTTHHHHHHHTTSSCCCC---------CCCCCC---CCCSSTTCCHHHHHHHHHHHHC--
T ss_pred cchHHHHHHHHHHHhhhcccCchHHHHHHHcCCCCCCC---------ccccCc---ccccCCCCCHHHHHHHHHHhcC--
Confidence 99999999999987642 235555665433211 010000 0234678999999999999984
Q ss_pred CCCCCcEEEEeCCCCCchhHHHHHHHHHH---------------------------------------------------
Q 035724 226 CDHKATVELIWGPPGTGKTKTVSMLLDFC--------------------------------------------------- 254 (1939)
Q Consensus 226 ~~~~~~v~LI~GPPGTGKTtti~~li~~~--------------------------------------------------- 254 (1939)
++++||+||||||||+|+++++..+
T Consensus 205 ----~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~~ilRlG~~~r~~~~~~~~~l~~ 280 (646)
T 4b3f_X 205 ----KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRLGHPARLLESIQQHSLDA 280 (646)
T ss_dssp ----SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTCCEEECSCCSSCCHHHHTTBHHH
T ss_pred ----CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCCceEEecchhhhhhhhhhhhHHH
Confidence 5799999999999999999888211
Q ss_pred -----------------------------------------------------------hcCCcEEEEcccchhhH---H
Q 035724 255 -----------------------------------------------------------FTKASLIFCTASSSYKL---H 272 (1939)
Q Consensus 255 -----------------------------------------------------------l~~a~vI~~T~sss~~l---~ 272 (1939)
+..+++|++|+.++... .
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~vv~~t~~~a~~~~~~~ 360 (646)
T 4b3f_X 281 VLARSDSAQIVADIRKDIDQVFVKNKKTQDKREKSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASADGPLK 360 (646)
T ss_dssp HHTTTTCSSTHHHHHHHHTTSSTTTTC------CCSSHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEETTTTCSSSGGG
T ss_pred HHhhchHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeeehhhhhhhhHHH
Confidence 12345677766554322 2
Q ss_pred hhhccCCcEEEEeCCcccchHHhhccccCCCcceEEEEeccccCCcceeccccccccccCCHHHHHHhcC--Cccccccc
Q 035724 273 RVAMEQLKFLVIDEAAQLKEVESAIPLKLPGIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSNLG--QAKHLLSI 350 (1939)
Q Consensus 273 ~l~~~~fdvVIIDEASQ~~E~e~lipL~~~~~~rlVLiGD~~QLpPvV~s~~~~~~gl~~SLFeRL~~~~--~~~~~L~~ 350 (1939)
.+....||+||||||+|++|+++++|+.. .+++||||||+||||++.+..+...|++.|+|+||.... .+.++|++
T Consensus 361 ~~~~~~Fd~vIIDEAsQ~~e~~~lipL~~--~~~~ILVGD~~QLpP~v~~~~a~~~gl~~SlferL~~~~~~~~v~~L~~ 438 (646)
T 4b3f_X 361 LLPESYFDVVVIDECAQALEASCWIPLLK--ARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVVRTLTV 438 (646)
T ss_dssp GSCTTCCSEEEETTGGGSCHHHHTTTGGG--SSEEEEEECTTSCCCCCSCHHHHHTTTTCCHHHHHHHHHGGGTEEECCE
T ss_pred hhhhccCCEEEEcCccccchHHHHhhccc--cceEEEcCCccccCceecchhhhhccccchHHHHHHHhcCCceeeeccc
Confidence 23456799999999999999999999964 589999999999999999988888999999999998763 45678999
Q ss_pred cccCChhhhccCcccccCCCCCCCCccccccccccc---CCCCCCCCeEEEEcCCCc-----cccCCCCcCCHHHHHHHH
Q 035724 351 QYRMHPSISSFPNSYFYDNKIFDSPNVKEKNYEKRF---LPGRMYGPYSFINVLDGR-----EESIAHSYRNMVEVFVVM 422 (1939)
Q Consensus 351 QYRmhp~I~~f~S~~FY~gkL~~~~~v~~~~~~~~~---l~~p~~~p~~Fidv~~G~-----Ee~~g~S~~N~~EA~~V~ 422 (1939)
||||||.|+.|+|..||+|+|.+++++..+...... .......|+.|+|+ .|. ++..+.|+.|..||++|+
T Consensus 439 qYRmhp~I~~f~n~~fY~g~L~~~~~~~~~~~~~lp~~~~~~~~~~p~~f~d~-~g~~~~~~~~~~~~s~~N~~EA~~V~ 517 (646)
T 4b3f_X 439 QYRMHQAIMRWASDTMYLGQLTAHSSVARHLLRDLPGVAATEETGVPLLLVDT-AGCGLFELEEEDEQSKGNPGEVRLVS 517 (646)
T ss_dssp ESSSCHHHHHHHHHHHSTTCCEECTTTTTCCGGGSTTCCCCTTTTCSEEEEEC-TTSSCCCCC-----CCCCHHHHHHHH
T ss_pred ccCCcHHHHhhhHHhhcCCccccCcchhhhhhccccccccccccCCceEEEec-CCCccccccccCCccccCHHHHHHHH
Confidence 999999999999999999999999988765443321 11122358999999 443 236788999999999999
Q ss_pred HHHHHHHHcCCCCCcceEe---------------e--------eeeec-------------ccc------cccc------
Q 035724 423 KILLNLYKVHNVSNLCSSL---------------M--------KKCIN-------------VKY------FFLS------ 454 (1939)
Q Consensus 423 ~lV~~L~~~~~~~~~~I~L---------------~--------ktVDg-------------VRS------GFLs------ 454 (1939)
.+++.|++.+..+ ..|++ . .|||+ ||| |||+
T Consensus 518 ~~v~~L~~~gv~~-~dIgVItpYraQ~~~l~~~l~~~~~~i~v~TVd~fQG~E~dvII~S~vrsn~~~~iGFl~~~rRlN 596 (646)
T 4b3f_X 518 LHIQALVDAGVPA-RDIAVVSPYNLQVDLLRQSLVHRHPELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRIN 596 (646)
T ss_dssp HHHHHHHHHTCCG-GGEEEEESCHHHHHHHHHHHTTTCTTCEEEEGGGGTTCCEEEEEEECCCCCTTCCCCSTTCHHHHH
T ss_pred HHHHHHHhcCCCc-CcEEEECCCHHHHHHHHHHHHHhCCCCEECChhhcccccCCEEEEEeccCCCCCCccccCCcCcEE
Confidence 9999999987544 44541 0 17775 887 9997
Q ss_pred ------eeEEEEEcchHHhhhcchHHHHHHHHHHHcCceecCc
Q 035724 455 ------MHCLWILGNARTLTRKKSVWEALVHDANARQCFFNAE 491 (1939)
Q Consensus 455 ------K~~LiIVGN~~tL~~~~~~W~~li~~~k~rgc~~~~~ 491 (1939)
|++||||||..+|.+ ++.|++++++++++|+++.+-
T Consensus 597 VAlTRAk~~liivGn~~~l~~-~~~~~~li~~~~~~g~~~~~~ 638 (646)
T 4b3f_X 597 VAVTRARRHVAVICDSRTVNN-HAFLKTLVEYFTQHGEVRTAF 638 (646)
T ss_dssp HHHHTEEEEEEEEECHHHHTT-SHHHHHHHHHHHHSSEEEEGG
T ss_pred eEhhhhhCeEEEEEchHHhcC-CHHHHHHHHHHHHCCCEeeHH
Confidence 999999999999988 599999999999999998763
No 2
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=100.00 E-value=1.8e-44 Score=469.59 Aligned_cols=434 Identities=25% Similarity=0.332 Sum_probs=308.0
Q ss_pred cccccccChHHHHHHcHhHHHHHHHHHHHHhHhhhhcCCchhhccccccCCCCceeEeEEEeeeecccCCC---------
Q 035724 3 QIPLSFQSVNRYFESFVFPLLEETRAQLSSSMEKISEAPFAQVVDLEDSKPYGAMLSDVKVDYWRNRFSNY--------- 73 (1939)
Q Consensus 3 kIP~tF~S~~eY~~sF~~pLieE~rAel~Ss~e~is~ap~~ei~~~~~~~~~g~~ly~l~v~~~rtgl~g~--------- 73 (1939)
+|+.+|+|+.+|++.|.++|..|.++|.... +... ..++.+ .|++|++++
T Consensus 1 ~~~~~~~~~~~y~~~~~~ll~~E~~~~~~~~-~~~~-------------------~~~~~~-~~~~~~~~~~~~~~~~~~ 59 (624)
T 2gk6_A 1 PLGSRYEDAYQYQNIFGPLVKLEADYDKKLK-ESQT-------------------QDNITV-RWDLGLNKKRIAYFTLPK 59 (624)
T ss_dssp --CCCCSSHHHHHHHHHHHHHHHHHHHHHHH-HHTC-------------------EEEECE-EEEECTTSCEEEEEECC-
T ss_pred CcCCccCCHHHHHHHHHHHHHHHHHHHHHHH-hhhh-------------------ccCceE-EeeecCCCceEEEEEecc
Confidence 5899999999999999999999988775431 1100 112222 233332221
Q ss_pred CcCCCCCCCCcEEEEecCCCCCchhhhhcccceeEEEEEeeccCCCCCCCccceEEEEeccccc-ccCCCccEEEEEecc
Q 035724 74 SKESYKVLPGDILVLADAKPETASDLRRVGRMWTFVSVTKVTEDKNESDTTSTSFKVKASKENQ-IDGANKSLFAIFLTN 152 (1939)
Q Consensus 74 ~~~~y~~~~GDIV~Ls~~kp~~~sDl~r~g~~~~~gvV~kv~~d~~e~~~~~~~~~v~~sk~~~-~~~~~~~l~vv~l~N 152 (1939)
....+++.+||+|.|+..++.. +.....|+|+++..... ..+.+.+..... +......+.+.++.|
T Consensus 60 ~~~~~~~~~Gd~v~l~~~~~~~-------~~~~~~g~v~~~~~~~~------~~v~v~~~~~~~~~~~~~~~~~~~~~~~ 126 (624)
T 2gk6_A 60 TDSDMRLMQGDEICLRYKGDLA-------PLWKGIGHVIKVPDNYG------DEIAIELRSSVGAPVEVTHNFQVDFVWK 126 (624)
T ss_dssp ------CCTTCEEEEEECSSSS-------CCCEEEEEEEECSCSSC------SEEEEEESCCTTCCCSCCSSEEEEECCC
T ss_pred cccCCcCCCCCEEEEEECCCCC-------CCcEEEEEEEEecCCCC------CEEEEEEccCCCCccccccceEEEEEeC
Confidence 2345689999999999765432 11235699999975311 246666643322 122334688999999
Q ss_pred cccHHHHHHHHHhccC------hhHHHHhhcCCCCcccccccCCCcCCCccccccCCCCCCCCCHHHHHHHHHHHhcccC
Q 035724 153 VTSNTRIWNSLHMSGN------LKIIKELLCTDSVVKEDCELCPVQSDGIWNDIFGPSLSSTLNDSQAQAVLSCLRRTHC 226 (1939)
Q Consensus 153 ~~t~~R~~~AL~~~~~------~~ii~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LN~sQ~~AV~~~L~~~~~ 226 (1939)
.+||+||++||+.+.. ..+...+++...... .........++......||++|++||..++.
T Consensus 127 ~~~~~r~~~al~~~~~~~~~~~~~~~~~ll~~~~~~~--------~~~~~~~~~~~~~~~~~ln~~Q~~av~~~l~---- 194 (624)
T 2gk6_A 127 STSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDV--------IIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQ---- 194 (624)
T ss_dssp CHHHHHHHHHHHHHHHCTTSBCSHHHHHHTTCCCCCC--------CCCCCCCSCCSCTTSCCCCHHHHHHHHHHHT----
T ss_pred CchHHHHHHHHHHHHhccccchHHHHHHhcCCCCccc--------cccccCcccccccccCCCCHHHHHHHHHHhc----
Confidence 9999999999987641 124455555422110 0011111222222346799999999999986
Q ss_pred CCCCcEEEEeCCCCCchhHHHHHHHHHHhc--CCcE--------------------------------------------
Q 035724 227 DHKATVELIWGPPGTGKTKTVSMLLDFCFT--KASL-------------------------------------------- 260 (1939)
Q Consensus 227 ~~~~~v~LI~GPPGTGKTtti~~li~~~l~--~a~v-------------------------------------------- 260 (1939)
.++.+|+||||||||+|++.++..+.. ..+|
T Consensus 195 ---~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~~~~~R~~~~~r~~~~~~~~~~tl 271 (624)
T 2gk6_A 195 ---RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL 271 (624)
T ss_dssp ---CSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTTCCEEECCCTGGGSCCCTTTTTBH
T ss_pred ---CCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhcCCeEEeeccccchhhccchhhhhH
Confidence 578999999999999999988844432 2344
Q ss_pred ---------------------------------------------------EEEcccchhhHHhhhccCCcEEEEeCCcc
Q 035724 261 ---------------------------------------------------IFCTASSSYKLHRVAMEQLKFLVIDEAAQ 289 (1939)
Q Consensus 261 ---------------------------------------------------I~~T~sss~~l~~l~~~~fdvVIIDEASQ 289 (1939)
|+||+.++.. ..+....||+||||||+|
T Consensus 272 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vI~~T~~~~~~-~~l~~~~fd~viIDEAsQ 350 (624)
T 2gk6_A 272 HNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGD-PRLAKMQFRSILIDESTQ 350 (624)
T ss_dssp HHHHTSCSSCHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHHTCSEEEEETGGGGC-GGGTTCCCSEEEETTGGG
T ss_pred HHHHHhccchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhcCCEEEEcChhhcc-hhhhcCCCCEEEEecccc
Confidence 4444333221 112335799999999999
Q ss_pred cchHHhhccccCCCcceEEEEeccccCCcceeccccccccccCCHHHHHHhcCCccccccccccCChhhhccCcccccCC
Q 035724 290 LKEVESAIPLKLPGIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSNLGQAKHLLSIQYRMHPSISSFPNSYFYDN 369 (1939)
Q Consensus 290 ~~E~e~lipL~~~~~~rlVLiGD~~QLpPvV~s~~~~~~gl~~SLFeRL~~~~~~~~~L~~QYRmhp~I~~f~S~~FY~g 369 (1939)
++++++++|+.. +.+++|++|||+||||++.+..+...|++.|+|+|+...+.+.++|++||||||+|++|+|..||+|
T Consensus 351 ~~e~~~li~l~~-~~~~~ilvGD~~QL~p~v~~~~~~~~gl~~Slferl~~~~~~~~~L~~qYR~~~~I~~~~n~~fY~~ 429 (624)
T 2gk6_A 351 ATEPECMVPVVL-GAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEG 429 (624)
T ss_dssp SCHHHHHHHHTT-TBSEEEEEECTTSCCCCCSCHHHHHHTTTSCHHHHHHHTTCCCEECCEECSSCHHHHHHHHHHHSTT
T ss_pred cCcHHHHHHHHh-cCCeEEEecChhccCCeeecHHHHHcCCchhHHHHHHhcCCCcEEehhhhCcChhHHhhhHHhhcCc
Confidence 999999999875 4689999999999999998877777889999999999888888999999999999999999999999
Q ss_pred CCCCCCccccccccc--ccCCCCCCCCeEEEEcCCCccc--cCCCCcCCHHHHHHHHHHHHHHHHcCCCCCcceE-----
Q 035724 370 KIFDSPNVKEKNYEK--RFLPGRMYGPYSFINVLDGREE--SIAHSYRNMVEVFVVMKILLNLYKVHNVSNLCSS----- 440 (1939)
Q Consensus 370 kL~~~~~v~~~~~~~--~~l~~p~~~p~~Fidv~~G~Ee--~~g~S~~N~~EA~~V~~lV~~L~~~~~~~~~~I~----- 440 (1939)
+|.+++.+..+.... ..++.+ ..|+.|+++ .|.++ ..+.|+.|..||+.|+++++.|++.+... ..|+
T Consensus 430 ~L~~~~~~~~r~~~~~~~~~~~~-~~p~~~~~~-~g~~~~~~~~~s~~N~~Ea~~v~~~v~~l~~~g~~~-~dIgVItpy 506 (624)
T 2gk6_A 430 SLQNGVTAADRVKKGFDFQWPQP-DKPMFFYVT-QGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKP-DQIGIITPY 506 (624)
T ss_dssp CCEESSCTGGGCCTTCCCCCSST-TCCEEEEEC-CCCEECCTTSSCCEEHHHHHHHHHHHHHHHTTTCCG-GGEEEECSC
T ss_pred ccccCCchhhhcccccCCCCCCC-CCCEEEEEc-CCcceecCCCCCccCHHHHHHHHHHHHHHHHcCCCC-CeEEEEcCC
Confidence 999887765443221 122222 358999998 67665 67889999999999999999999875433 3444
Q ss_pred ----------ee---------------eeeec-------------ccc------cccc------------eeEEEEEcch
Q 035724 441 ----------LM---------------KKCIN-------------VKY------FFLS------------MHCLWILGNA 464 (1939)
Q Consensus 441 ----------L~---------------ktVDg-------------VRS------GFLs------------K~~LiIVGN~ 464 (1939)
+. .|||+ ||| ||+. |++||||||.
T Consensus 507 ~~Q~~~i~~~l~~~~~~~~~~~~~v~v~TVd~fQG~E~dvVIls~vrs~~~~~~gfl~~~~rlnVAlTRAk~~L~ivg~~ 586 (624)
T 2gk6_A 507 EGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNP 586 (624)
T ss_dssp HHHHHHHHHHHHHSCSSCHHHHHHSEEECHHHHTTCCEEEEEEEECC------CCTTTCHHHHHHHTTSEEEEEEEEECH
T ss_pred HHHHHHHHHHHHhhccccccccCceEEechhhcCCcccCEEEEEeecCCCCCCccccCCcceeeeehhhhhCcEEEEECH
Confidence 10 04443 776 8987 9999999999
Q ss_pred HHhhhcchHHHHHHHHHHHcCceecCc
Q 035724 465 RTLTRKKSVWEALVHDANARQCFFNAE 491 (1939)
Q Consensus 465 ~tL~~~~~~W~~li~~~k~rgc~~~~~ 491 (1939)
.+|.+ ++.|+.++++|+++||+++++
T Consensus 587 ~~l~~-~~~~~~li~~~~~~~~~~~~~ 612 (624)
T 2gk6_A 587 KALSK-QPLWNHLLNYYKEQKVLVEGP 612 (624)
T ss_dssp HHHTT-SHHHHHHHHHHHHTTCCCCSC
T ss_pred HHHcc-ChHHHHHHHHHHHCCCEEeCC
Confidence 99988 599999999999999999874
No 3
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=100.00 E-value=1.4e-43 Score=469.23 Aligned_cols=445 Identities=24% Similarity=0.314 Sum_probs=312.2
Q ss_pred CccccccccChHHHHHHcHhHHHHHHHHHHHHhHhhhhcCCchhhccccccCCCCceeEeEEEeeeecccCCCCcCCCCC
Q 035724 1 VEQIPLSFQSVNRYFESFVFPLLEETRAQLSSSMEKISEAPFAQVVDLEDSKPYGAMLSDVKVDYWRNRFSNYSKESYKV 80 (1939)
Q Consensus 1 V~kIP~tF~S~~eY~~sF~~pLieE~rAel~Ss~e~is~ap~~ei~~~~~~~~~g~~ly~l~v~~~rtgl~g~~~~~y~~ 80 (1939)
+.+||++|.|+.+|.+.|.++|..|.++|.... +. .......+ ... ....|..+..+.+ .+ .....++
T Consensus 175 ~~~v~~~y~~~~~Y~~~~~~l~~lE~~~~~~~~-e~-~~~~~~~~-~~~-~~~~~~~~~~~~~-------~~-~~~~~~l 242 (800)
T 2wjy_A 175 PQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK-ES-QTQDNITV-RWD-LGLNKKRIAYFTL-------PK-TDSDMRL 242 (800)
T ss_dssp CCCCCSCCSCHHHHHHHHHHHHHHHHHHHHHHH-HH-TCEEEECC-EEE-ECTTCCEEEEECC-------CB-CCC--CC
T ss_pred ccccccccCCHHHHHHHHHHHHHHHHHhhhhhh-hh-hhccceEE-EEE-ecCCCeeEEEEEe-------cc-ccCCCCC
Confidence 357999999999999999999998987775421 11 00000000 000 0111211222211 11 2345679
Q ss_pred CCCcEEEEecCCCCCchhhhhcccceeEEEEEeeccCCCCCCCccceEEEEecccccc-cCCCccEEEEEecccccHHHH
Q 035724 81 LPGDILVLADAKPETASDLRRVGRMWTFVSVTKVTEDKNESDTTSTSFKVKASKENQI-DGANKSLFAIFLTNVTSNTRI 159 (1939)
Q Consensus 81 ~~GDIV~Ls~~kp~~~sDl~r~g~~~~~gvV~kv~~d~~e~~~~~~~~~v~~sk~~~~-~~~~~~l~vv~l~N~~t~~R~ 159 (1939)
.+||+|.|+..++.. ......|+|+++..... ..+.+.++..... ......+.+.++.|.+||+||
T Consensus 243 ~~GD~v~l~~~~~~~-------~~~~~~g~V~~v~~~~~------~~v~l~~~~~~~~p~~~~~~~~v~~~~~~~~~~r~ 309 (800)
T 2wjy_A 243 MQGDEICLRYKGDLA-------PLWKGIGHVIKVPDNYG------DEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRM 309 (800)
T ss_dssp CTTCEEEEEECSSSS-------CCEEEEEEEEECSBTTB------SCEEEEESCCTTCCTTCCSCEEEEECCCCHHHHHH
T ss_pred CCCCEEEEEECCCCC-------CCceeEEEEEEEcCCCC------CEEEEEEccCCCCccccCCCceEEEeecCChHHHH
Confidence 999999999765532 12235699999975311 2355555432221 223445888999999999999
Q ss_pred HHHHHhccC------hhHHHHhhcCCCCcccccccCCCcCCCccccccCCCCCCCCCHHHHHHHHHHHhcccCCCCCcEE
Q 035724 160 WNSLHMSGN------LKIIKELLCTDSVVKEDCELCPVQSDGIWNDIFGPSLSSTLNDSQAQAVLSCLRRTHCDHKATVE 233 (1939)
Q Consensus 160 ~~AL~~~~~------~~ii~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LN~sQ~~AV~~~L~~~~~~~~~~v~ 233 (1939)
+.||+.+.. ..+...+++...... .....+...++......||++|++||..++. +++.
T Consensus 310 ~~aL~~~~~~e~~~~~~l~~~ll~~~~~~~--------~~~~~l~~~~~~~~~~~Ln~~Q~~Av~~~l~-------~~~~ 374 (800)
T 2wjy_A 310 QSALKTFAVDETSVSGYIYHKLLGHEVEDV--------IIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQ-------RPLS 374 (800)
T ss_dssp HHHHHHHHHCTTSBCHHHHHHHTTCCCCCC--------CCCCCCCSCCSCTTSCCCCHHHHHHHHHHHT-------SSEE
T ss_pred HHHHHHHHHhhcchhHHHHHHhcCCCCCch--------hhcccCccccccccccCCCHHHHHHHHHhcc-------CCeE
Confidence 999987541 123444554321100 0011112223223346799999999999987 5789
Q ss_pred EEeCCCCCchhHHHHHHHHHHhc--CCcEEEE------------------------------------------------
Q 035724 234 LIWGPPGTGKTKTVSMLLDFCFT--KASLIFC------------------------------------------------ 263 (1939)
Q Consensus 234 LI~GPPGTGKTtti~~li~~~l~--~a~vI~~------------------------------------------------ 263 (1939)
+|+||||||||+|++.++..+.. ..+|++|
T Consensus 375 lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~g~~vvRlg~~~r~~i~~~~~~~tlh~~~~~~ 454 (800)
T 2wjy_A 375 LIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNM 454 (800)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTTTCCEEECCCGGGGGCCCTTGGGBHHHHHHTC
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHhCcceEeecccchhhhcchhhhhhHHHHHHcC
Confidence 99999999999999998855442 3344444
Q ss_pred -----------------------------------------------cccchhhHHhhhccCCcEEEEeCCcccchHHhh
Q 035724 264 -----------------------------------------------TASSSYKLHRVAMEQLKFLVIDEAAQLKEVESA 296 (1939)
Q Consensus 264 -----------------------------------------------T~sss~~l~~l~~~~fdvVIIDEASQ~~E~e~l 296 (1939)
|+.++.. ..+....||+||||||+|+++++++
T Consensus 455 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~~-~~l~~~~fd~viIDEAsQ~~e~~~l 533 (800)
T 2wjy_A 455 DSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGD-PRLAKMQFRSILIDESTQATEPECM 533 (800)
T ss_dssp TTCHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEETGGGGC-TTTTTCCCSEEEETTGGGSCHHHHH
T ss_pred ccHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHhhhccCCEEEEchhhhCC-hhhhcCCCCEEEEECCCCCCcHHHH
Confidence 3222211 1122347999999999999999999
Q ss_pred ccccCCCcceEEEEeccccCCcceeccccccccccCCHHHHHHhcCCccccccccccCChhhhccCcccccCCCCCCCCc
Q 035724 297 IPLKLPGIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSNLGQAKHLLSIQYRMHPSISSFPNSYFYDNKIFDSPN 376 (1939)
Q Consensus 297 ipL~~~~~~rlVLiGD~~QLpPvV~s~~~~~~gl~~SLFeRL~~~~~~~~~L~~QYRmhp~I~~f~S~~FY~gkL~~~~~ 376 (1939)
+|+.. +.+++|++|||+||||++.+..+...|++.|+|+||...+...++|++||||||+|++|+|..||+|+|.+++.
T Consensus 534 i~l~~-~~~~~ilvGD~~QLpPvv~s~~a~~~gl~~SlFerL~~~g~~~~~L~~qYRm~p~I~~f~n~~fY~g~L~~~~~ 612 (800)
T 2wjy_A 534 VPVVL-GAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVT 612 (800)
T ss_dssp HHHTT-TBSEEEEEECTTSCCCCCCCHHHHHTTTTSCHHHHHHHTTCCCEECCEECSSCHHHHHHHHHHHSTTCCEESSC
T ss_pred HHHHh-cCCeEEEecccccCCCeecchhhhhcCcchHHHHHHHhCCCCceEehhhcCCCcHHHHhhHHHhcCCccccCCc
Confidence 99875 56899999999999999988777778999999999998888889999999999999999999999999998877
Q ss_pred cccccccc--ccCCCCCCCCeEEEEcCCCccc--cCCCCcCCHHHHHHHHHHHHHHHHcCCCCCcceE------------
Q 035724 377 VKEKNYEK--RFLPGRMYGPYSFINVLDGREE--SIAHSYRNMVEVFVVMKILLNLYKVHNVSNLCSS------------ 440 (1939)
Q Consensus 377 v~~~~~~~--~~l~~p~~~p~~Fidv~~G~Ee--~~g~S~~N~~EA~~V~~lV~~L~~~~~~~~~~I~------------ 440 (1939)
+..+.... ..++.+ ..|+.|+++ .|.++ ..|.|+.|..||+.|+++++.|++.+..+ ..|+
T Consensus 613 ~~~r~~~~~~~~~~~~-~~p~~f~~~-~g~e~~~~~~~S~~N~~Ea~~V~~~v~~L~~~g~~~-~dIgVItPy~~Q~~~I 689 (800)
T 2wjy_A 613 AADRVKKGFDFQWPQP-DKPMFFYVT-QGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKP-DQIGIITPYEGQRSYL 689 (800)
T ss_dssp SGGGSCTTCCCCCSST-TSCEEEEEC-CCCCEECSSBSCEECHHHHHHHHHHHHHHHHTTCCG-GGEEEECSCHHHHHHH
T ss_pred hhhhccccccccccCC-CCCEEEEEc-CCceeecCCCCcccCHHHHHHHHHHHHHHHHcCCCc-ccEEEEeccHHHHHHH
Confidence 65543221 122222 458999999 67654 67889999999999999999999876543 3444
Q ss_pred ---ee---------------eeeec-------------ccc------cccc------------eeEEEEEcchHHhhhcc
Q 035724 441 ---LM---------------KKCIN-------------VKY------FFLS------------MHCLWILGNARTLTRKK 471 (1939)
Q Consensus 441 ---L~---------------ktVDg-------------VRS------GFLs------------K~~LiIVGN~~tL~~~~ 471 (1939)
+. .|||+ ||| ||+. |++||||||..+|.+ +
T Consensus 690 ~~~L~~~~~~~~~~~~~v~V~TVd~fQG~E~dvVIlS~vrs~~~~~~gfl~d~rrLNVAlTRAk~~LiIvG~~~~l~~-~ 768 (800)
T 2wjy_A 690 VQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSK-Q 768 (800)
T ss_dssp HHHHHHHCSSCHHHHHTSEEECGGGGTTCCEEEEEEECCCCSCCCCCGGGTCHHHHHHHHTSEEEEEEEEECHHHHTS-S
T ss_pred HHHHHhcCcccccccCceEEccccccCCCcCCEEEEEecCCCCccccccccCcchhhhhHHhhhccEEEEECHHHhcc-C
Confidence 10 05554 676 7987 999999999999987 5
Q ss_pred hHHHHHHHHHHHcCceecCc
Q 035724 472 SVWEALVHDANARQCFFNAE 491 (1939)
Q Consensus 472 ~~W~~li~~~k~rgc~~~~~ 491 (1939)
+.|+.++++++++||+++++
T Consensus 769 ~~w~~ll~~~~~~~~~~~~~ 788 (800)
T 2wjy_A 769 PLWNHLLNYYKEQKVLVEGP 788 (800)
T ss_dssp HHHHHHHHHHHHTTCEEESC
T ss_pred HHHHHHHHHHHHCCCEEeCC
Confidence 99999999999999999885
No 4
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-43 Score=465.89 Aligned_cols=445 Identities=24% Similarity=0.327 Sum_probs=309.0
Q ss_pred CccccccccChHHHHHHcHhHHHHHHHHHHHHhHhhhhcCCchhhccccccCCCCceeEeEEEeeeecccCCCCcCCCCC
Q 035724 1 VEQIPLSFQSVNRYFESFVFPLLEETRAQLSSSMEKISEAPFAQVVDLEDSKPYGAMLSDVKVDYWRNRFSNYSKESYKV 80 (1939)
Q Consensus 1 V~kIP~tF~S~~eY~~sF~~pLieE~rAel~Ss~e~is~ap~~ei~~~~~~~~~g~~ly~l~v~~~rtgl~g~~~~~y~~ 80 (1939)
+.+||++|.|..+|++.|.++|..|.++|... ..........+.. .....|..+..+.+. +.....+++
T Consensus 177 ~~~v~~~y~~~~~Y~~~~~~ll~lE~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------~~~~~~~~~ 245 (802)
T 2xzl_A 177 IPPLLLRYQDAYEYQRSYGPLIKLEADYDKQL--KESQALEHISVSW--SLALNNRHLASFTLS-------TFESNELKV 245 (802)
T ss_dssp -CCCCSSCSSHHHHHHHHHHHHHHHHHHHHHH--HCCC--CCBCEEE--EECTTSCEEEEEC----------------CC
T ss_pred ccccccccCCHHHHHHHHHHHHHHHHHhhhhh--hhHhhccCceEee--eccCCCeEEEEEEec-------ccccCCCCC
Confidence 46899999999999999999988888776541 1110111001100 001122223233221 112346789
Q ss_pred CCCcEEEEecCCCCCchhhhhcccceeEEEEEeeccCCCCCCCccceEEEEeccc--ccccCCCccEEEEEecccccHHH
Q 035724 81 LPGDILVLADAKPETASDLRRVGRMWTFVSVTKVTEDKNESDTTSTSFKVKASKE--NQIDGANKSLFAIFLTNVTSNTR 158 (1939)
Q Consensus 81 ~~GDIV~Ls~~kp~~~sDl~r~g~~~~~gvV~kv~~d~~e~~~~~~~~~v~~sk~--~~~~~~~~~l~vv~l~N~~t~~R 158 (1939)
.+||+|.|+..++... .....|+|+++..... ..+.+.+... ..+......+.+.++.|.+||+|
T Consensus 246 ~~GD~v~l~~~~~~~~-------~~~~~g~V~~v~~~~~------~~v~v~~~~~~~~~p~~~~~~~~v~~~~~~~~~~r 312 (802)
T 2xzl_A 246 AIGDEMILWYSGMQHP-------DWEGRGYIVRLPNSFQ------DTFTLELKPSKTPPPTHLTTGFTAEFIWKGTSYDR 312 (802)
T ss_dssp CTTCEEEEEECSSSSS-------CEEEEEEEEECCC---------CCEEEEECCCSSCCCTTCCSSEEEEECCCCHHHHH
T ss_pred CCCCEEEEEECCCCCC-------ceeEEEEEEEECCCCC------CEEEEEEeCCCCCCccccCCCeEEEEEecCchHHH
Confidence 9999999997665421 1224699999975311 2356665432 11223344588999999999999
Q ss_pred HHHHHHhccC------hhHHHHhhcCCCCcccccccCCCcCCCccccccCCCCCCCCCHHHHHHHHHHHhcccCCCCCcE
Q 035724 159 IWNSLHMSGN------LKIIKELLCTDSVVKEDCELCPVQSDGIWNDIFGPSLSSTLNDSQAQAVLSCLRRTHCDHKATV 232 (1939)
Q Consensus 159 ~~~AL~~~~~------~~ii~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LN~sQ~~AV~~~L~~~~~~~~~~v 232 (1939)
|++||+.+.. ..+...+++...... .........++......||++|++||..++. .++
T Consensus 313 ~~~AL~~~~~~~~~~~~~l~~~ll~~~~~~~--------~~~~~lp~~~~~~~~~~Ln~~Q~~Av~~~l~-------~~~ 377 (802)
T 2xzl_A 313 MQDALKKFAIDKKSISGYLYYKILGHQVVDI--------SFDVPLPKEFSIPNFAQLNSSQSNAVSHVLQ-------RPL 377 (802)
T ss_dssp HHHHHHHHHHCTTSBCHHHHHHHHTCCCCCC--------CCCCCCCSCCSCTTSCCCCHHHHHHHHHHTT-------CSE
T ss_pred HHHHHHHHHhccccchhHHHHHhcCCccccc--------cccccCcccccccccccCCHHHHHHHHHHhc-------CCC
Confidence 9999987641 124555665432210 0001111222223346899999999999986 578
Q ss_pred EEEeCCCCCchhHHHHHHHHHHhc--CCcEEEE-----------------------------------------------
Q 035724 233 ELIWGPPGTGKTKTVSMLLDFCFT--KASLIFC----------------------------------------------- 263 (1939)
Q Consensus 233 ~LI~GPPGTGKTtti~~li~~~l~--~a~vI~~----------------------------------------------- 263 (1939)
.+|+||||||||+|++.++..+.. ..+|++|
T Consensus 378 ~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~g~~ilR~g~~~r~~i~~~~~~~tl~~~~~~ 457 (802)
T 2xzl_A 378 SLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKVVRLTAKSREDVESSVSNLALHNLVGR 457 (802)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHTTCCEEECCCGGGTTSCCTTGGGBHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhhCccEEeecccchhhhcchhhhhhHHHHHHh
Confidence 999999999999999988744332 3344444
Q ss_pred -----------------------------------------------cccchhhHHhhhccCCcEEEEeCCcccchHHhh
Q 035724 264 -----------------------------------------------TASSSYKLHRVAMEQLKFLVIDEAAQLKEVESA 296 (1939)
Q Consensus 264 -----------------------------------------------T~sss~~l~~l~~~~fdvVIIDEASQ~~E~e~l 296 (1939)
|+.++.. ..+.. .||+||||||+|+++++.+
T Consensus 458 ~~~~~l~~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~~-~~L~~-~fd~viIDEA~q~~e~~~l 535 (802)
T 2xzl_A 458 GAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAGD-KRLDT-KFRTVLIDESTQASEPECL 535 (802)
T ss_dssp TCCTHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTCSEEEEETTGGGC-TTCCS-CCSEEEETTGGGSCHHHHH
T ss_pred hcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCCEEEechhhcCh-HHHhc-cCCEEEEECccccchHHHH
Confidence 3332221 11122 7999999999999999999
Q ss_pred ccccCCCcceEEEEeccccCCcceeccccccccccCCHHHHHHhcCCccccccccccCChhhhccCcccccCCCCCCCCc
Q 035724 297 IPLKLPGIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSNLGQAKHLLSIQYRMHPSISSFPNSYFYDNKIFDSPN 376 (1939)
Q Consensus 297 ipL~~~~~~rlVLiGD~~QLpPvV~s~~~~~~gl~~SLFeRL~~~~~~~~~L~~QYRmhp~I~~f~S~~FY~gkL~~~~~ 376 (1939)
+|+.. +.+++|++|||+||||++.+..+...+++.|+|+|+...+...++|++||||||.|++|+|..||+|+|.++++
T Consensus 536 i~l~~-~~~~lilvGD~~QL~pvv~s~~a~~~gl~~slferl~~~~~~~~~L~~qYRm~p~I~~f~n~~fY~g~L~~~~~ 614 (802)
T 2xzl_A 536 IPIVK-GAKQVILVGDHQQLGPVILERKAADAGLKQSLFERLISLGHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVT 614 (802)
T ss_dssp HHHTT-TBSEEEEEECTTSCCCCCCCHHHHHTTTTCCHHHHHHHTTCCCEECCEECSSCHHHHHHHHHHHSTTCCEESSC
T ss_pred HHHHh-CCCEEEEEeCccccCCeechhhhhhcCCchhHHHHHHhcCCCceEeeeecCCChHHHHHHHHHhcCCccccCCc
Confidence 99864 56899999999999999988777778899999999998888889999999999999999999999999998877
Q ss_pred ccccccccc--cCCCCCCCCeEEEEcCCCccc--cCCCCcCCHHHHHHHHHHHHHHHHcCCCCCcceE------------
Q 035724 377 VKEKNYEKR--FLPGRMYGPYSFINVLDGREE--SIAHSYRNMVEVFVVMKILLNLYKVHNVSNLCSS------------ 440 (1939)
Q Consensus 377 v~~~~~~~~--~l~~p~~~p~~Fidv~~G~Ee--~~g~S~~N~~EA~~V~~lV~~L~~~~~~~~~~I~------------ 440 (1939)
+..+..... .++.+ ..|+.|+++ .|.++ ..++|+.|..||+.|+++++.|++.+... ..|+
T Consensus 615 ~~~r~~~~~~~~~~~~-~~p~~f~~~-~g~~~~~~~~~s~~N~~EA~~V~~~v~~L~~~g~~~-~~IgVItpy~~Q~~~I 691 (802)
T 2xzl_A 615 IEQRTVPNSKFPWPIR-GIPMMFWAN-YGREEISANGTSFLNRIEAMNCERIITKLFRDGVKP-EQIGVITPYEGQRAYI 691 (802)
T ss_dssp TTTTCCTTCCCCCSST-TCCEEEEEC-CCCCEECTTSSSEECHHHHHHHHHHHHHHHHTTCCG-GGEEEEESCHHHHHHH
T ss_pred hhhhccccccCCCCCC-CCCEEEEEc-CCceeecCCCCCcCCHHHHHHHHHHHHHHHHcCCCc-ccEEEEcccHHHHHHH
Confidence 654433221 12222 358999998 67655 67889999999999999999999876543 3444
Q ss_pred ---ee---------------eeeec-------------ccc------cccc------------eeEEEEEcchHHhhhcc
Q 035724 441 ---LM---------------KKCIN-------------VKY------FFLS------------MHCLWILGNARTLTRKK 471 (1939)
Q Consensus 441 ---L~---------------ktVDg-------------VRS------GFLs------------K~~LiIVGN~~tL~~~~ 471 (1939)
|. .|||+ ||| ||++ |++||||||..+|.+ +
T Consensus 692 ~~~L~~~~~l~~~~~~~v~V~TVd~fQG~E~dvVIlS~vrs~~~~~~gfl~d~rrLNVAlTRAk~~LiIvg~~~~l~~-~ 770 (802)
T 2xzl_A 692 LQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDPRRLNVGLTRAKYGLVILGNPRSLAR-N 770 (802)
T ss_dssp HHHHHHHCSSCHHHHHTSEEEEHHHHTTCCEEEEEEECCCCCTTCCCGGGGCHHHHHHHHSSEEEEEEEEECHHHHTT-S
T ss_pred HHHHHHccccccccccceEEcchhhcCCCccCEEEEEeccCCCCCCcccccCccceeeeHhhhhCeEEEEECHHHhcc-C
Confidence 10 04443 776 8987 999999999999988 5
Q ss_pred hHHHHHHHHHHHcCceecCc
Q 035724 472 SVWEALVHDANARQCFFNAE 491 (1939)
Q Consensus 472 ~~W~~li~~~k~rgc~~~~~ 491 (1939)
+.|++++++++++||+++++
T Consensus 771 ~~w~~ll~~~~~~~~~~~~~ 790 (802)
T 2xzl_A 771 TLWNHLLIHFREKGCLVEGT 790 (802)
T ss_dssp HHHHHHHHHHHHHTCEEEEE
T ss_pred hHHHHHHHHHHHcCCeecCC
Confidence 99999999999999999874
No 5
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=99.73 E-value=2.7e-17 Score=214.99 Aligned_cols=131 Identities=17% Similarity=0.111 Sum_probs=86.9
Q ss_pred CCcEEEEeCCcccchHHhhcccc-CCCcceEEEEeccccCCcceeccccccccccCCHHHHHHhc--CCccccccccccC
Q 035724 278 QLKFLVIDEAAQLKEVESAIPLK-LPGIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSNL--GQAKHLLSIQYRM 354 (1939)
Q Consensus 278 ~fdvVIIDEASQ~~E~e~lipL~-~~~~~rlVLiGD~~QLpPvV~s~~~~~~gl~~SLFeRL~~~--~~~~~~L~~QYRm 354 (1939)
.|++|+|||+...+..+..+... ....++++++||++|-- -...|-+...|.++... +...+.|+++||+
T Consensus 213 ~~~~ilVDE~QD~~~~q~~ll~~l~~~~~~l~~vGD~~QsI-------y~frga~~~~~~~~~~~~~~~~~~~L~~nyRs 285 (647)
T 3lfu_A 213 RFTNILVDEFQDTNNIQYAWIRLLAGDTGKVMIVGDDDQSI-------YGWRGAQVENIQRFLNDFPGAETIRLEQNYRS 285 (647)
T ss_dssp HCCEEEESSGGGCCHHHHHHHHHHHTTTCEEEEEECGGGCC-------CGGGTCCTTHHHHHHHHCTTCEEEEECBCSSS
T ss_pred hCCEEEEECcccCCHHHHHHHHHHhcCCCEEEEEcCchhhh-------ccccCCCHHHHHHHHHhCCCCeEEEcccCCCC
Confidence 48999999999888775433322 22457899999999922 12234456777777654 3457899999999
Q ss_pred ChhhhccCcccccCCCCCCCCcccccccccccCCCCCCCCeEEEEcCCCccccCCCCcCCHHHHHHHHHHHHHHHHcCCC
Q 035724 355 HPSISSFPNSYFYDNKIFDSPNVKEKNYEKRFLPGRMYGPYSFINVLDGREESIAHSYRNMVEVFVVMKILLNLYKVHNV 434 (1939)
Q Consensus 355 hp~I~~f~S~~FY~gkL~~~~~v~~~~~~~~~l~~p~~~p~~Fidv~~G~Ee~~g~S~~N~~EA~~V~~lV~~L~~~~~~ 434 (1939)
+|.|.++.|..|+.+.-..+..... ..+.-.++.++.. . ....||+.|++.+..+++.+..
T Consensus 286 ~~~I~~~~n~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-~----------~~~~e~~~ia~~I~~l~~~g~~ 346 (647)
T 3lfu_A 286 TSNILSAANALIENNNGRLGKKLWT--------DGADGEPISLYCA-F----------NELDEARFVVNRIKTWQDNGGA 346 (647)
T ss_dssp CHHHHHHHHHHHTTCSSCCCCCCBC--------SSCCCCCEEEEEE-E----------EHHHHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHhcccccCCcccc--------CCCCCCceEEEec-C----------ChHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999998764332211110 0011124555544 1 1357999999999999887543
No 6
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=99.58 E-value=3.7e-15 Score=192.03 Aligned_cols=187 Identities=19% Similarity=0.262 Sum_probs=127.4
Q ss_pred ccccHHHHHHHHHhccChhHHHHhhcCCCCcccccccCCCcCCCccccccCCCCCCCCCHHHHHHHHHHHhcccCCCCCc
Q 035724 152 NVTSNTRIWNSLHMSGNLKIIKELLCTDSVVKEDCELCPVQSDGIWNDIFGPSLSSTLNDSQAQAVLSCLRRTHCDHKAT 231 (1939)
Q Consensus 152 N~~t~~R~~~AL~~~~~~~ii~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LN~sQ~~AV~~~L~~~~~~~~~~ 231 (1939)
+.++..|+|.++..+... +.+++....... .....+.+ +.. ....||++|++|+..++. ++
T Consensus 145 ~~~yl~~~~~~E~~ia~~--l~~~~~~~~~~~--------~~~~~~~~-l~~-~~~~L~~~Q~~Av~~~~~-------~~ 205 (574)
T 3e1s_A 145 GRIYLPHVLRAEKKLASL--IRTLLATPPADG--------AGNDDWAV-PKK-ARKGLSEEQASVLDQLAG-------HR 205 (574)
T ss_dssp CEEECHHHHHHHHHHHHH--HHHHHHSCCCC---------CCCCCCCC-CTT-TTTTCCHHHHHHHHHHTT-------CS
T ss_pred cEEEcHHHHHHHHHHHHH--HHHHhccCCccC--------CChhhHHH-HHh-hcCCCCHHHHHHHHHHHh-------CC
Confidence 468899999999887654 344443322100 00000111 111 156899999999999986 57
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHh-cCCcEEEEcccchh-------------hHHhh-------------hccCCcEEEE
Q 035724 232 VELIWGPPGTGKTKTVSMLLDFCF-TKASLIFCTASSSY-------------KLHRV-------------AMEQLKFLVI 284 (1939)
Q Consensus 232 v~LI~GPPGTGKTtti~~li~~~l-~~a~vI~~T~sss~-------------~l~~l-------------~~~~fdvVII 284 (1939)
+.+|+||||||||||+..++..+. ...+|++++.++.+ +++++ ...++|+|||
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlII 285 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLIV 285 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEEE
Confidence 899999999999999999986554 44577776544321 11111 1236899999
Q ss_pred eCCcccchHHhhccc-cCCCcceEEEEeccccCCcceeccccccccccCCHHHHHHhcCCccccccccccCC--hhhhcc
Q 035724 285 DEAAQLKEVESAIPL-KLPGIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSNLGQAKHLLSIQYRMH--PSISSF 361 (1939)
Q Consensus 285 DEASQ~~E~e~lipL-~~~~~~rlVLiGD~~QLpPvV~s~~~~~~gl~~SLFeRL~~~~~~~~~L~~QYRmh--p~I~~f 361 (1939)
|||+|+........+ ..++..++|++||+.||||+.. .+.|..+.. ..+.+.|+++||++ +.|..+
T Consensus 286 DEasml~~~~~~~Ll~~~~~~~~lilvGD~~QL~~v~~----------g~~~~~l~~-~~~~~~L~~~~R~~~~s~I~~~ 354 (574)
T 3e1s_A 286 DEVSMMGDALMLSLLAAVPPGARVLLVGDTDQLPPVDA----------GLPLLALAQ-AAPTIKLTQVYRQAAKNPIIQA 354 (574)
T ss_dssp CCGGGCCHHHHHHHHTTSCTTCEEEEEECTTSCCCSSS----------CCHHHHHHH-HSCEEECCCCCHHHHTCHHHHH
T ss_pred cCccCCCHHHHHHHHHhCcCCCEEEEEecccccCCccC----------CcHHHHHHh-cCCEEEcceeEeCCCccHHHHH
Confidence 999999877432222 2335689999999999999863 346777776 67899999999998 678887
Q ss_pred CcccccCC
Q 035724 362 PNSYFYDN 369 (1939)
Q Consensus 362 ~S~~FY~g 369 (1939)
.+. +..|
T Consensus 355 a~~-i~~g 361 (574)
T 3e1s_A 355 AHG-LLHG 361 (574)
T ss_dssp HHH-HHTT
T ss_pred HHH-HhCC
Confidence 663 3444
No 7
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.58 E-value=1.8e-15 Score=196.46 Aligned_cols=197 Identities=25% Similarity=0.325 Sum_probs=129.3
Q ss_pred EEecccccHHHHHHHHHhccChhHHHHhhcCCCCcccccccCCCcCCCccccccCCCCCCCCCHHHHHHHHHHHhcccCC
Q 035724 148 IFLTNVTSNTRIWNSLHMSGNLKIIKELLCTDSVVKEDCELCPVQSDGIWNDIFGPSLSSTLNDSQAQAVLSCLRRTHCD 227 (1939)
Q Consensus 148 v~l~N~~t~~R~~~AL~~~~~~~ii~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LN~sQ~~AV~~~L~~~~~~ 227 (1939)
+..-+.+|.+|+|+++..+... +..+..+.+.. +......+...|+. ...+++|+.|+..++.
T Consensus 101 v~~~~~lyl~~~~~~E~~ia~~--l~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~Q~~Ai~~~l~----- 163 (608)
T 1w36_D 101 ILCGDRLYLNRMWCNERTVARF--FNEVNHAIEVD-------EALLAQTLDKLFPV---SDEINWQKVAAAVALT----- 163 (608)
T ss_dssp EECSSEEEEHHHHHHHHHHHHH--HTSCCBCCCCC-------HHHHHHHHHTTCCC---TTSCCHHHHHHHHHHT-----
T ss_pred EecCCEEEeHHHHHHHHHHHHH--HHHhCcCCCCC-------HHHHHHHHHHHhcc---CCCCHHHHHHHHHHhc-----
Confidence 4444677899999999876543 22221111100 00001112233321 1237899999999997
Q ss_pred CCCcEEEEeCCCCCchhHHHHHHHHHHhc-----CCcEEEEcccchh--hH----------------------------H
Q 035724 228 HKATVELIWGPPGTGKTKTVSMLLDFCFT-----KASLIFCTASSSY--KL----------------------------H 272 (1939)
Q Consensus 228 ~~~~v~LI~GPPGTGKTtti~~li~~~l~-----~a~vI~~T~sss~--~l----------------------------~ 272 (1939)
+++.+|+||||||||||++.++..+.. ..+|+++++++.. ++ +
T Consensus 164 --~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~~~~~~~~~~~~Tih 241 (608)
T 1w36_D 164 --RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLH 241 (608)
T ss_dssp --BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCCCCSCSCCCBTTT
T ss_pred --CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCHHHHhccchhhhhhH
Confidence 578999999999999999999866642 3467776443321 11 1
Q ss_pred hh---------------hccCCcEEEEeCCcccchHH--hhccccCCCcceEEEEeccccCCcceeccc----c--cccc
Q 035724 273 RV---------------AMEQLKFLVIDEAAQLKEVE--SAIPLKLPGIQHAILIGDECQLPAMVESSV----S--GEAC 329 (1939)
Q Consensus 273 ~l---------------~~~~fdvVIIDEASQ~~E~e--~lipL~~~~~~rlVLiGD~~QLpPvV~s~~----~--~~~g 329 (1939)
++ ...++|++|||||+|+..+. .++.. .++..++||+||+.||||+..+.. + .+.|
T Consensus 242 ~ll~~~~~~~~~~~~~~~~l~~d~lIIDEAsml~~~~~~~Ll~~-l~~~~~liLvGD~~QL~~V~~G~vl~dl~~~~~~g 320 (608)
T 1w36_D 242 RLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDA-LPDHARVIFLGDRDQLASVEAGAVLGDICAYANAG 320 (608)
T ss_dssp SCC-----------CTTSCCSCSEEEECSGGGCBHHHHHHHHHT-CCTTCEEEEEECTTSGGGTSTTBCHHHHGGGGTTC
T ss_pred hhhccCCCchHHHhccCCCCCCCEEEEechhhCCHHHHHHHHHh-CCCCCEEEEEcchhhcCCCCCCcHHHHHHHHHhcc
Confidence 10 12368999999999999763 33332 346789999999999999975432 2 2357
Q ss_pred ccCCHHHHHHhcC-----------Cc-----cccccccccCChh--hhccCcc
Q 035724 330 LGRSLFERLSNLG-----------QA-----KHLLSIQYRMHPS--ISSFPNS 364 (1939)
Q Consensus 330 l~~SLFeRL~~~~-----------~~-----~~~L~~QYRmhp~--I~~f~S~ 364 (1939)
++.+.++++.+.. .+ .++|+++||+++. |..+.+.
T Consensus 321 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~R~~~~s~I~~la~~ 373 (608)
T 1w36_D 321 FTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAA 373 (608)
T ss_dssp CCHHHHHHHHHHSSSCCCCCSTTTTHHHHTTEEECCCCCCSSCCTTHHHHHHH
T ss_pred ccHHHHHHHHHhcCcccccccccccccccccEEecceeeeeCCcchHHHHHHH
Confidence 8888999887642 11 5889999999986 8888763
No 8
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=99.51 E-value=9.6e-14 Score=183.98 Aligned_cols=61 Identities=26% Similarity=0.403 Sum_probs=47.8
Q ss_pred eEEEEeecccCCCCCEEEEeccCCCCCccccccCCCCCCCCCChhHh-hhhhHHHHhhhheeeeccccceEEEecc
Q 035724 954 ALVLTIVESKGLEFQVIHYTSQCCNSPFKHALFDSTSPGSFPSFNEA-KHNVLCSELKQLYVAITRTRQRLWIWEN 1028 (1939)
Q Consensus 954 ~lVmTihesKGLEF~~Vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~Elk~LYVA~TRAr~~L~I~d~ 1028 (1939)
..|||||.|||||||+|||.++..+ .+|..... ....+.+|++++|||+||||++|+|.-.
T Consensus 559 V~lmTiH~aKGLEf~~Vfl~g~~eg--------------~~P~~~~~~~~~~~eEErRL~YVaiTRA~~~L~ls~~ 620 (724)
T 1pjr_A 559 VMLMTLHAAKGLEFPVVFLIGMEEG--------------IFPHNRSLEDDDEMEEERRLAYVGITRAEEELVLTSA 620 (724)
T ss_dssp EEEEEGGGGTTCCEEEEEECCCBTB--------------TTTBGGGGTCHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred EEEEeeehhcCCCCCEEEEeCCCCC--------------CCCccccCCChHHHHHHHHHHHHHHHHHhheEEEEee
Confidence 4599999999999999999998766 22221111 1235789999999999999999999754
No 9
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=99.37 E-value=7.1e-13 Score=166.84 Aligned_cols=48 Identities=19% Similarity=0.283 Sum_probs=38.6
Q ss_pred EEEeecccCCCCCEEEEeccCCCCCccccccCCCCCCCCCChhHhhhhhHHHHhhhheeeeccccceEEEe
Q 035724 956 VLTIVESKGLEFQVIHYTSQCCNSPFKHALFDSTSPGSFPSFNEAKHNVLCSELKQLYVAITRTRQRLWIW 1026 (1939)
Q Consensus 956 VmTihesKGLEF~~Vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Elk~LYVA~TRAr~~L~I~ 1026 (1939)
+||+|.|||||||.|+++.-.. + .....+|+++||||+||||++|+++
T Consensus 412 ~~t~h~~kG~e~~~v~~~~~~~--------------------~---~~~~~~~~~~~yva~tRa~~~l~~~ 459 (459)
T 3upu_A 412 ASTFHKAQGMSVDRAFIYTPCI--------------------H---YADVELAQQLLYVGVTRGRYDVFYV 459 (459)
T ss_dssp EEETGGGTTCCEEEEEEECGGG--------------------G---GSCHHHHHHHHHHHHHHEEEEEEEC
T ss_pred EEEEEeccCCCCCEEEEecCCC--------------------C---CcChHHHhheeeeeecceeeEEEeC
Confidence 6999999999999999964210 0 1235578999999999999999985
No 10
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=99.37 E-value=6.5e-13 Score=167.17 Aligned_cols=153 Identities=19% Similarity=0.257 Sum_probs=105.0
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCC--cEEEEcccchhh-------------H
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTKA--SLIFCTASSSYK-------------L 271 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a--~vI~~T~sss~~-------------l 271 (1939)
..||+.|++|+..++..... ..++.+|.||||||||+++..++..+.... .|+++|.+..+. .
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~~--~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~~~T~ 101 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIKE--KKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKEASTI 101 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHHS--SSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSCEEEH
T ss_pred ccCCHHHHHHHHHHHHHHhc--CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhccchhhH
Confidence 57999999999998774321 134889999999999999999997776543 466665443221 1
Q ss_pred Hhh--------------------hccCCcEEEEeCCcccchHHhhccc-cCCCcceEEEEeccccCCcceeccccccccc
Q 035724 272 HRV--------------------AMEQLKFLVIDEAAQLKEVESAIPL-KLPGIQHAILIGDECQLPAMVESSVSGEACL 330 (1939)
Q Consensus 272 ~~l--------------------~~~~fdvVIIDEASQ~~E~e~lipL-~~~~~~rlVLiGD~~QLpPvV~s~~~~~~gl 330 (1939)
+.+ ....++++|||||++++.......+ ..++..+++++||+.||||+..+..... +
T Consensus 102 h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~~~~~~~~vGD~~Ql~~v~~g~~~~~--l 179 (459)
T 3upu_A 102 HSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIPPWCTIIGIGDNKQIRPVDPGENTAY--I 179 (459)
T ss_dssp HHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSCTTCEEEEEECTTSCCCCCTTSCSCC--C
T ss_pred HHHhccCcccccccchhcccccccccCCCEEEEECchhCCHHHHHHHHHhccCCCEEEEECCHHHcCCccCCcchHh--H
Confidence 111 1135899999999999865322221 2235689999999999999875431110 1
Q ss_pred cCCHHHHHHhcCCccccccccccCChhhhccCccccc
Q 035724 331 GRSLFERLSNLGQAKHLLSIQYRMHPSISSFPNSYFY 367 (1939)
Q Consensus 331 ~~SLFeRL~~~~~~~~~L~~QYRmhp~I~~f~S~~FY 367 (1939)
..++. ..+...+.|+++||+++.|.++.+...-
T Consensus 180 -~~~~~---~~~~~~~~L~~~~R~~~~I~~~a~~lr~ 212 (459)
T 3upu_A 180 -SPFFT---HKDFYQCELTEVKRSNAPIIDVATDVRN 212 (459)
T ss_dssp -CGGGT---CTTEEEEECCCCCCCCCHHHHHHHHHHT
T ss_pred -HHHHh---cCCCcEEeceeeeeCCcHHHHHHHHHHc
Confidence 01111 1245678999999999999999997643
No 11
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=99.32 E-value=9.7e-13 Score=144.60 Aligned_cols=106 Identities=16% Similarity=0.206 Sum_probs=76.2
Q ss_pred cccCCCCEEEcccCcH---HHHHHHhhccCCCCCCccccCceEEEEEcChhHHHHHhhhhCCc-----------------
Q 035724 894 LIYGEPPILLESRNDE---NAIIKIFGNSGDAGGNMVGFGAEQVILVRDDCVRKEISNYVGKQ----------------- 953 (1939)
Q Consensus 894 ~~~Gp~P~l~~~~~~~---~~~~~~~~~~~~~~~~~~efga~q~IlVr~~~~k~~i~~~l~~~----------------- 953 (1939)
..+|++|.++...+.+ ..++..+.. ...| ....|||+|+..+.+.+.+.|.+.
T Consensus 29 ~~~G~~p~~~~~~~~~~e~~~i~~~I~~-~~~g------~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~~~~~~ 101 (174)
T 3dmn_A 29 DRQGDLPNVVVTPNFEAGVDQVVDQLAM-NDSE------RDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQRLAPG 101 (174)
T ss_dssp -CCCCCCEEEEESSHHHHHHHHHHHHHH-HHHT------TCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-CCCSS
T ss_pred CCCCCCCEEEEeCCHHHHHHHHHHHHHH-hccC------CCcEEEEecCHHHHHHHHHHHHHcCCcceeecccccccCCC
Confidence 3589999999654433 234444433 2112 235699999999888887766332
Q ss_pred eEEEEeecccCCCCCEEEEeccCCCCCccccccCCCCCCCCCChhHhhhhhHHHHhhhheeeeccccceEEEeccc
Q 035724 954 ALVLTIVESKGLEFQVIHYTSQCCNSPFKHALFDSTSPGSFPSFNEAKHNVLCSELKQLYVAITRTRQRLWIWENM 1029 (1939)
Q Consensus 954 ~lVmTihesKGLEF~~Vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Elk~LYVA~TRAr~~L~I~d~~ 1029 (1939)
..|||+|.|||||||.||+++.... .++. .+++++||||+||||++|+|+-..
T Consensus 102 v~v~t~~~~KGlEf~~V~~~~~~~~--------------~~~~---------~~~~~llYva~TRA~~~l~~~~~~ 154 (174)
T 3dmn_A 102 VIVVPSFLAKGLEFDAVIVWNANQE--------------NYQR---------EDERQLLYTICSRAMHELTLVAVG 154 (174)
T ss_dssp EEEEEGGGCTTCCEEEEEEETCBTT--------------TSCS---------GGGHHHHHHHHTTEEEEEEEEEES
T ss_pred eEEEEccccCCcCCCEEEEecCCcc--------------cCCC---------hhhhceeEEEecCcccEEEEEeCC
Confidence 3599999999999999999986554 1111 358999999999999999998754
No 12
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.21 E-value=7.9e-10 Score=149.69 Aligned_cols=155 Identities=17% Similarity=0.145 Sum_probs=111.5
Q ss_pred hhhcCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcch-----HHHHHHhhhHHhh-----------hhhhc------CC
Q 035724 1059 MQVASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYW-----EGRSKATGLKATA-----------DRCRS------SN 1116 (1939)
Q Consensus 1059 l~v~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~-----~~l~kA~~l~e~a-----------~~~~s------~~ 1116 (1939)
++-+..|++=-.....+...+.+.+|+..|+++--... ..++... .+.+. ..... +.
T Consensus 979 L~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlL-i~tAIkaD~~Rv~eyI~kLd~~d~~eIA~ 1057 (1630)
T 1xi4_A 979 LSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLL-ILTAIKADRTRVMEYINRLDNYDAPDIAN 1057 (1630)
T ss_pred cccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHH-HHHHHHhChhhHHHHHHHhhhccHHHHHH
Confidence 33478888888889999999999999999999852111 0111111 00000 00000 01
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHH-HhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccCHHH-
Q 035724 1117 PKQANVNLREAAKIFEAIGKADSAAKCFY-NLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKFFSE- 1194 (1939)
Q Consensus 1117 ~~ea~~~y~eAA~lYe~~G~~~kAaecy~-kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd~dk- 1194 (1939)
.....+.|.||+.+|++++.+.+|+..+. ..++|++|.+++.+.-....|-+.|.++++.|+|++|.+.|.++++++.
T Consensus 1058 Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKAdD~say 1137 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSY 1137 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhcCChHHH
Confidence 11233457888888888888888766655 7888888888887755556689999999999999999999999997554
Q ss_pred --HHHHHHhcCChHHHHHHHHh
Q 035724 1195 --CLAVCSKGKLFEIGLQYMNH 1214 (1939)
Q Consensus 1195 --AI~my~k~k~fd~airLv~q 1214 (1939)
.+..+.+.+.|++|+++...
T Consensus 1138 ~eVa~~~~~lGkyEEAIeyL~m 1159 (1630)
T 1xi4_A 1138 MEVVQAANTSGNWEELVKYLQM 1159 (1630)
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 77789999999999999874
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.16 E-value=1.4e-09 Score=147.36 Aligned_cols=249 Identities=12% Similarity=0.090 Sum_probs=150.0
Q ss_pred cCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcch-HHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHH-
Q 035724 1062 ASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYW-EGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADS- 1139 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~-~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~k- 1139 (1939)
-..|.-|.++|..+...|+|++|+.+|++|++... ..++.++. ..+.|.+|.++|..+.+.++
T Consensus 1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKAdD~say~eVa~~~~---------------~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAAN---------------TSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred cCCHHHHHHHHHHHHhCCCHHHHHHHHHhcCChHHHHHHHHHHH---------------HcCCHHHHHHHHHHHHhhccc
Confidence 47799999999999999999999999999977322 12222111 22344555555544332221
Q ss_pred ------HHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHHHHHhcCChHHHHHHHH
Q 035724 1140 ------AAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKFFSECLAVCSKGKLFEIGLQYMN 1213 (1939)
Q Consensus 1140 ------Aaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd~dkAI~my~k~k~fd~airLv~ 1213 (1939)
=+.+|.+.++++. .+-|.+......+...|++++..|+|.+|..+|.++++|.++..++.+.+++++|++.++
T Consensus 1167 ~~Idt~LafaYAKl~rlee-le~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaar 1245 (1630)
T 1xi4_A 1167 SYVETELIFALAKTNRLAE-LEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGAR 1245 (1630)
T ss_pred ccccHHHHHHHHhhcCHHH-HHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 1355556666664 444444344556788999999999999999999999999999999999999999999998
Q ss_pred hhhhcccccccccccch--------hhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHHhhcC
Q 035724 1214 HWKQHADTDVEHAGTDV--------GLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRSVDLMRKFLKSLSC 1285 (1939)
Q Consensus 1214 q~~d~l~~~~~~~~~~~--------~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s~eeA~~~L~k~~~ 1285 (1939)
+-.+.. .|-..+. .++......-....+.++..+.+|.+.|.+++|+..+...=..|.| ..+.
T Consensus 1246 KA~n~~----aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Lera-----H~gm 1316 (1630)
T 1xi4_A 1246 KANSTR----TWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERA-----HMGM 1316 (1630)
T ss_pred HhCCHH----HHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChh-----HhHH
Confidence 422210 0000000 0011101000012334555566677777777777666532111111 1123
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHc-------------CCHHHHHHHHHHhCCHHHHHHHHHHH
Q 035724 1286 FDDLLVLEEE--SGNFMDAANIARLR-------------GDIFLAVDLLQKAGCFKEACNVTLNH 1335 (1939)
Q Consensus 1286 ldea~ell~e--~G~feEAa~Lak~~-------------Gk~~eAi~my~kAG~~~eA~rva~~~ 1335 (1939)
+.++..++.+ -++..|+++++... .-+.+++-+|.+.|+|+.|......|
T Consensus 1317 ftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h 1381 (1630)
T 1xi4_A 1317 FTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 1381 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhc
Confidence 3333333322 23344444444443 34888999999999999998655433
No 14
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=99.15 E-value=2.3e-11 Score=150.41 Aligned_cols=132 Identities=23% Similarity=0.314 Sum_probs=85.8
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccchh-h----H----------------Hh--hhc-----cCCcE
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSSY-K----L----------------HR--VAM-----EQLKF 281 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss~-~----l----------------~~--l~~-----~~fdv 281 (1939)
.++.+|.||||||||+++..++.. ...+|++.+..+. . + .. ++. .++|+
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~~---~~~lVlTpT~~aa~~l~~kl~~~~~~~~~~~~V~T~dsfL~~~~~~~~~~~d~ 237 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVNF---EEDLILVPGRQAAEMIRRRANASGIIVATKDNVRTVDSFLMNYGKGARCQFKR 237 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCCT---TTCEEEESCHHHHHHHHHHHTTTSCCCCCTTTEEEHHHHHHTTTSSCCCCCSE
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcc---CCeEEEeCCHHHHHHHHHHhhhcCccccccceEEEeHHhhcCCCCCCCCcCCE
Confidence 578999999999999999877631 2333333111110 0 0 00 111 23899
Q ss_pred EEEeCCcccchHHhhccccCCCcceEEEEeccccCCcceeccccccccccCC-HHHHHHhcCCccccccccccCChhhhc
Q 035724 282 LVIDEAAQLKEVESAIPLKLPGIQHAILIGDECQLPAMVESSVSGEACLGRS-LFERLSNLGQAKHLLSIQYRMHPSISS 360 (1939)
Q Consensus 282 VIIDEASQ~~E~e~lipL~~~~~~rlVLiGD~~QLpPvV~s~~~~~~gl~~S-LFeRL~~~~~~~~~L~~QYRmhp~I~~ 360 (1939)
||||||+|+........+...+.+++|++||++||||+...+. +... -|.++. ......++.+|||.+.++.
T Consensus 238 liiDE~sm~~~~~l~~l~~~~~~~~vilvGD~~Qlp~v~~~~~-----~~~~~~~~~l~--~~~~~~~~~SyR~p~dv~~ 310 (446)
T 3vkw_A 238 LFIDEGLMLHTGCVNFLVEMSLCDIAYVYGDTQQIPYINRVTG-----FPYPAHFAKLE--VDEVETRRTTLRCPADVTH 310 (446)
T ss_dssp EEEETGGGSCHHHHHHHHHHTTCSEEEEEECTTSCCCCCCSTT-----CCCCHHHHSCC--CSEEEEECEESSCCHHHHH
T ss_pred EEEeCcccCCHHHHHHHHHhCCCCEEEEecCcccccCcccCCC-----ccchhhhhhcc--cCcEEEeeeEeCCCHHHHH
Confidence 9999999998765433332234589999999999999864431 2111 122221 2245668999999999999
Q ss_pred cCcccccCCCCC
Q 035724 361 FPNSYFYDNKIF 372 (1939)
Q Consensus 361 f~S~~FY~gkL~ 372 (1939)
|.+.. |++++.
T Consensus 311 lLs~l-Y~~~V~ 321 (446)
T 3vkw_A 311 FLNQR-YEGHVM 321 (446)
T ss_dssp HHHTT-SSSCCE
T ss_pred HHHhh-cCCceE
Confidence 99975 887665
No 15
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=99.00 E-value=4e-10 Score=145.30 Aligned_cols=37 Identities=22% Similarity=0.211 Sum_probs=31.1
Q ss_pred ccccCHHHHhhhcc---CCcEEEecCCCChHHHHHHHHHH
Q 035724 716 PFEVTDEQLEMILF---PKSSFILGRSGTGKTTILTMKLF 752 (1939)
Q Consensus 716 pf~l~~ee~~iI~~---p~~~~vlGrSGTGKTT~~L~kl~ 752 (1939)
++.++++|.+.+.. ++.++|.|++||||||++..-+.
T Consensus 187 ~~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~ 226 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVAD 226 (574)
T ss_dssp TTTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHH
Confidence 68899999999985 66689999999999998765443
No 16
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.90 E-value=2.7e-09 Score=132.16 Aligned_cols=137 Identities=12% Similarity=0.123 Sum_probs=41.1
Q ss_pred cCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHH-HHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCH--H
Q 035724 1062 ASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEG-RSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKA--D 1138 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~-l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~--~ 1138 (1939)
-..|+-|..+|..+.+++++++|+.+|+++.|...-. +..+ .+..+.|.+|.+.|..+-+. +
T Consensus 29 ~~~~~vWs~La~A~l~~g~~~eAIdsfika~D~~~y~~V~~~---------------ae~~g~~EeAi~yl~~ark~~~~ 93 (449)
T 1b89_A 29 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQA---------------ANTSGNWEELVKYLQMARKKARE 93 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHH---------------HHhCCCHHHHHHHHHHHHHhCcc
Confidence 3678899999999999999999999999997743211 1111 11245667777755444321 1
Q ss_pred HHHH-----HHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHHHHHhcCChHHHHHHHH
Q 035724 1139 SAAK-----CFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKFFSECLAVCSKGKLFEIGLQYMN 1213 (1939)
Q Consensus 1139 kAae-----cy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd~dkAI~my~k~k~fd~airLv~ 1213 (1939)
-++. ||.+.|++.++.+++.. .....|...|+++...|.|++|..+|.++..|.+-++++.+.|+|++|++..+
T Consensus 94 ~~i~~~Li~~Y~Klg~l~e~e~f~~~-pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~ 172 (449)
T 1b89_A 94 SYVETELIFALAKTNRLAELEEFING-PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGAR 172 (449)
T ss_dssp ---------------CHHHHTTTTTC-C----------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHhCCHHHHHHHHcC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHH
Confidence 2455 88888888888887654 22346888888888899999999999888888888888888888888888877
Q ss_pred h
Q 035724 1214 H 1214 (1939)
Q Consensus 1214 q 1214 (1939)
+
T Consensus 173 K 173 (449)
T 1b89_A 173 K 173 (449)
T ss_dssp H
T ss_pred H
Confidence 4
No 17
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.87 E-value=3.5e-09 Score=138.23 Aligned_cols=79 Identities=19% Similarity=0.169 Sum_probs=58.1
Q ss_pred eEEEEEcChhHHHHHhhhhCC----------ceEEEEeecccCCCCCEEEEeccCCCCCccccccCCCCCCCCCChhHhh
Q 035724 932 EQVILVRDDCVRKEISNYVGK----------QALVLTIVESKGLEFQVIHYTSQCCNSPFKHALFDSTSPGSFPSFNEAK 1001 (1939)
Q Consensus 932 ~q~IlVr~~~~k~~i~~~l~~----------~~lVmTihesKGLEF~~Vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1001 (1939)
..+||++...++..|.+.+.. ...|.|+|.+||+|||+||+....+... ...
T Consensus 499 dIgVItpy~~Q~~~i~~~l~~~~~~~~~~~~~v~v~TVd~fQG~E~dvVIls~vrs~~~---------~~~--------- 560 (624)
T 2gk6_A 499 QIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEH---------QGI--------- 560 (624)
T ss_dssp GEEEECSCHHHHHHHHHHHHHSCSSCHHHHHHSEEECHHHHTTCCEEEEEEEECC---------------C---------
T ss_pred eEEEEcCCHHHHHHHHHHHHhhccccccccCceEEechhhcCCcccCEEEEEeecCCCC---------CCc---------
Confidence 459999999999888877632 2359999999999999999965433200 000
Q ss_pred hhhHHHHhhhheeeeccccceEEEecccc
Q 035724 1002 HNVLCSELKQLYVAITRTRQRLWIWENME 1030 (1939)
Q Consensus 1002 ~~~l~~Elk~LYVA~TRAr~~L~I~d~~~ 1030 (1939)
....+.+.||||+||||+.|+|+-+..
T Consensus 561 --gfl~~~~rlnVAlTRAk~~L~ivg~~~ 587 (624)
T 2gk6_A 561 --GFLNDPRRLNVALTRARYGVIIVGNPK 587 (624)
T ss_dssp --CTTTCHHHHHHHTTSEEEEEEEEECHH
T ss_pred --cccCCcceeeeehhhhhCcEEEEECHH
Confidence 001257889999999999999998754
No 18
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.87 E-value=4.9e-09 Score=139.74 Aligned_cols=79 Identities=19% Similarity=0.199 Sum_probs=59.0
Q ss_pred eEEEEEcChhHHHHHhhhhCC----------ceEEEEeecccCCCCCEEEEeccCCCCCccccccCCCCCCCCCChhHhh
Q 035724 932 EQVILVRDDCVRKEISNYVGK----------QALVLTIVESKGLEFQVIHYTSQCCNSPFKHALFDSTSPGSFPSFNEAK 1001 (1939)
Q Consensus 932 ~q~IlVr~~~~k~~i~~~l~~----------~~lVmTihesKGLEF~~Vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1001 (1939)
..+||++...+.+.|.+.+.+ ...|.|+|.+||+|||+||+....+.. . ...
T Consensus 675 dIgVItPy~~Q~~~I~~~L~~~~~~~~~~~~~v~V~TVd~fQG~E~dvVIlS~vrs~~-----------~---~~~---- 736 (800)
T 2wjy_A 675 QIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANE-----------H---QGI---- 736 (800)
T ss_dssp GEEEECSCHHHHHHHHHHHHHHCSSCHHHHHTSEEECGGGGTTCCEEEEEEECCCCSC-----------C---CCC----
T ss_pred cEEEEeccHHHHHHHHHHHHhcCcccccccCceEEccccccCCCcCCEEEEEecCCCC-----------c---ccc----
Confidence 459999999999888877632 346999999999999999996543320 0 000
Q ss_pred hhhHHHHhhhheeeeccccceEEEecccc
Q 035724 1002 HNVLCSELKQLYVAITRTRQRLWIWENME 1030 (1939)
Q Consensus 1002 ~~~l~~Elk~LYVA~TRAr~~L~I~d~~~ 1030 (1939)
....+.+.||||+||||+.|+|+-+..
T Consensus 737 --gfl~d~rrLNVAlTRAk~~LiIvG~~~ 763 (800)
T 2wjy_A 737 --GFLNDPRRLNVALTRARYGVIIVGNPK 763 (800)
T ss_dssp --GGGTCHHHHHHHHTSEEEEEEEEECHH
T ss_pred --ccccCcchhhhhHHhhhccEEEEECHH
Confidence 011357889999999999999998754
No 19
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.81 E-value=6e-09 Score=139.06 Aligned_cols=79 Identities=19% Similarity=0.193 Sum_probs=59.2
Q ss_pred eEEEEEcChhHHHHHhhhhCC----------ceEEEEeecccCCCCCEEEEeccCCCCCccccccCCCCCCCCCChhHhh
Q 035724 932 EQVILVRDDCVRKEISNYVGK----------QALVLTIVESKGLEFQVIHYTSQCCNSPFKHALFDSTSPGSFPSFNEAK 1001 (1939)
Q Consensus 932 ~q~IlVr~~~~k~~i~~~l~~----------~~lVmTihesKGLEF~~Vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1001 (1939)
..+||++...++..|.+.+.+ ...|.|+|..||+|||+||+....+.. . ...
T Consensus 677 ~IgVItpy~~Q~~~I~~~L~~~~~l~~~~~~~v~V~TVd~fQG~E~dvVIlS~vrs~~-----------~---~~~---- 738 (802)
T 2xzl_A 677 QIGVITPYEGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANE-----------Q---QAI---- 738 (802)
T ss_dssp GEEEEESCHHHHHHHHHHHHHHCSSCHHHHHTSEEEEHHHHTTCCEEEEEEECCCCCT-----------T---CCC----
T ss_pred cEEEEcccHHHHHHHHHHHHHccccccccccceEEcchhhcCCCccCEEEEEeccCCC-----------C---CCc----
Confidence 459999999999988887632 346999999999999999996543320 0 000
Q ss_pred hhhHHHHhhhheeeeccccceEEEecccc
Q 035724 1002 HNVLCSELKQLYVAITRTRQRLWIWENME 1030 (1939)
Q Consensus 1002 ~~~l~~Elk~LYVA~TRAr~~L~I~d~~~ 1030 (1939)
....+.+.||||+||||+.|+|+-+..
T Consensus 739 --gfl~d~rrLNVAlTRAk~~LiIvg~~~ 765 (802)
T 2xzl_A 739 --GFLRDPRRLNVGLTRAKYGLVILGNPR 765 (802)
T ss_dssp --GGGGCHHHHHHHHSSEEEEEEEEECHH
T ss_pred --ccccCccceeeeHhhhhCeEEEEECHH
Confidence 011356789999999999999998654
No 20
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=98.70 E-value=3.7e-09 Score=139.16 Aligned_cols=63 Identities=25% Similarity=0.298 Sum_probs=50.3
Q ss_pred CceEEEEeecccCCCCCEEEEeccCCCCCccccccCCCCCCCCCChhHhhhhhHHHHhhhheeeeccccceEEEecc
Q 035724 952 KQALVLTIVESKGLEFQVIHYTSQCCNSPFKHALFDSTSPGSFPSFNEAKHNVLCSELKQLYVAITRTRQRLWIWEN 1028 (1939)
Q Consensus 952 ~~~lVmTihesKGLEF~~Vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Elk~LYVA~TRAr~~L~I~d~ 1028 (1939)
+...|||||.|||||||+||++++..+ .+|.........+.+|++++|||+||||++|+|.-.
T Consensus 550 d~V~l~TiH~sKGLEf~~Vfl~g~~eg--------------~~P~~~~~~~~~~~EErRL~YVA~TRAk~~L~ls~~ 612 (673)
T 1uaa_A 550 DQVQLMTLHASKGLEFPYVYMVGMEEG--------------FLPHQSSIDEDNIDEERRLAYVGITRAQKELTFTLC 612 (673)
T ss_dssp CSEEEEESTTTSSCCEEEEEECCCBSS--------------TTTTHHHHTTTCCHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred CeeEEEeeeecccccCCEEEEecCcCC--------------CCCCcccCcchhHHHHHHHHHHHHHhhhheEEEEEe
Confidence 467899999999999999999998766 334322222235789999999999999999999754
No 21
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=98.65 E-value=7.7e-09 Score=144.45 Aligned_cols=80 Identities=28% Similarity=0.452 Sum_probs=57.0
Q ss_pred CCceEEEEeecccCCCCCEEEEeccCCCCCccc---------------cccCCCCCCCCCChh------HhhhhhHHHHh
Q 035724 951 GKQALVLTIVESKGLEFQVIHYTSQCCNSPFKH---------------ALFDSTSPGSFPSFN------EAKHNVLCSEL 1009 (1939)
Q Consensus 951 ~~~~lVmTihesKGLEF~~Vil~~~~~~~~~~~---------------~~~~~~~~~~~~~~~------~~~~~~l~~El 1009 (1939)
.+...|||||+|||||||+|||.++..+.+..+ .++++......|... ......+.+|+
T Consensus 785 ~d~V~ImTIH~SKGLEfpvVfl~gl~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~EE~ 864 (1232)
T 3u4q_A 785 EDVVRLMTIHSSKGLEFPVVFVAGLGRNFNMMDLNKSYLLDKELGFGTKYIHPQLRISYPTLPLIAMKKKMRRELLSEEL 864 (1232)
T ss_dssp CCCEEEEEGGGTTTCCEEEEEEECTTSBCCCTTSCSSEEEETTTEEEECEEETTTTEEECCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEecchhccCCCCCEEEEccccccCCCcCCCCCeeeccccCcCcceecchhccccCcHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999876543221 122232222233322 13445788999
Q ss_pred hhheeeeccccceEEEecccc
Q 035724 1010 KQLYVAITRTRQRLWIWENME 1030 (1939)
Q Consensus 1010 k~LYVA~TRAr~~L~I~d~~~ 1030 (1939)
++||||+|||+++|+|+-...
T Consensus 865 RLLYVAlTRAk~~L~l~~~~~ 885 (1232)
T 3u4q_A 865 RVLYVALTRAKEKLFLIGSCK 885 (1232)
T ss_dssp HHHHHHHHTEEEEEEEEEECS
T ss_pred HHHHHHHHhhccEEEEEEEeC
Confidence 999999999999999987653
No 22
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.64 E-value=9e-08 Score=125.46 Aligned_cols=79 Identities=13% Similarity=0.154 Sum_probs=56.4
Q ss_pred eEEEEEcChhHHHHHhhhhCC---ceEEEEeecccCCCCCEEEEeccCCCCCccccccCCCCCCCCCChhHhhhhhHHHH
Q 035724 932 EQVILVRDDCVRKEISNYVGK---QALVLTIVESKGLEFQVIHYTSQCCNSPFKHALFDSTSPGSFPSFNEAKHNVLCSE 1008 (1939)
Q Consensus 932 ~q~IlVr~~~~k~~i~~~l~~---~~lVmTihesKGLEF~~Vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~E 1008 (1939)
..+||++-.++...|++.+.+ ..-|.|+|...|-|+|+||+- +.++. +.....+ + .+
T Consensus 532 dIgVItpYraQ~~~l~~~l~~~~~~i~v~TVd~fQG~E~dvII~S-~vrsn--------~~~~iGF----------l-~~ 591 (646)
T 4b3f_X 532 DIAVVSPYNLQVDLLRQSLVHRHPELEIKSVDGFQGREKEAVILS-FVRSN--------RKGEVGF----------L-AE 591 (646)
T ss_dssp GEEEEESCHHHHHHHHHHHTTTCTTCEEEEGGGGTTCCEEEEEEE-CCCCC--------TTCCCCS----------T-TC
T ss_pred cEEEECCCHHHHHHHHHHHHHhCCCCEECChhhcccccCCEEEEE-eccCC--------CCCCccc----------c-CC
Confidence 358999999999988888743 345999999999999988873 32220 0000001 1 13
Q ss_pred hhhheeeeccccceEEEecccc
Q 035724 1009 LKQLYVAITRTRQRLWIWENME 1030 (1939)
Q Consensus 1009 lk~LYVA~TRAr~~L~I~d~~~ 1030 (1939)
.+.|.||+||||+.|+|+-+..
T Consensus 592 ~rRlNVAlTRAk~~liivGn~~ 613 (646)
T 4b3f_X 592 DRRINVAVTRARRHVAVICDSR 613 (646)
T ss_dssp HHHHHHHHHTEEEEEEEEECHH
T ss_pred cCcEEeEhhhhhCeEEEEEchH
Confidence 4678999999999999998654
No 23
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=98.64 E-value=1.2e-07 Score=124.72 Aligned_cols=137 Identities=14% Similarity=0.025 Sum_probs=85.1
Q ss_pred cCCcEEEEeCCcccchHHhhcc--ccCCCcceEEEEeccccCCcceeccccccccccCCHHHHHHhc--CCccccccccc
Q 035724 277 EQLKFLVIDEAAQLKEVESAIP--LKLPGIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSNL--GQAKHLLSIQY 352 (1939)
Q Consensus 277 ~~fdvVIIDEASQ~~E~e~lip--L~~~~~~rlVLiGD~~QLpPvV~s~~~~~~gl~~SLFeRL~~~--~~~~~~L~~QY 352 (1939)
..|++|+|||+...+..+.-+. +.. ...++++|||++|-- -...|-+...|.++... +...+.|+++|
T Consensus 206 ~~~~~ilVDEfQDt~~~Q~~ll~~L~~-~~~~l~~vGD~~QsI-------y~frga~~~~~~~~~~~~~~~~~~~L~~ny 277 (673)
T 1uaa_A 206 NKIRYLLVDEYQDTNTSQYELVKLLVG-SRARFTVVGDDDQSI-------YSWRGARPQNLVLLSQDFPALKVIKLEQNY 277 (673)
T ss_dssp TTCSEEEESCGGGCBHHHHHHHHHHHT-TTCCEEEECCGGGCC-------CGGGTBCTTHHHHHHHHSTTCEEECCCCBS
T ss_pred hhCcEEEEeccccCCHHHHHHHHHHhc-CCCeEEEEeCchhhh-------hhccCCCHHHHHHHHHhCCCCeEEECCCCC
Confidence 4689999999999888754332 322 346899999999942 11223355677776553 34578999999
Q ss_pred cCChhhhccCcccccCCCCCCCCcccccccccccCCCCCCCCeEEEEcCCCccccCCCCcCCHHHHHHHHHHHHHHHHcC
Q 035724 353 RMHPSISSFPNSYFYDNKIFDSPNVKEKNYEKRFLPGRMYGPYSFINVLDGREESIAHSYRNMVEVFVVMKILLNLYKVH 432 (1939)
Q Consensus 353 Rmhp~I~~f~S~~FY~gkL~~~~~v~~~~~~~~~l~~p~~~p~~Fidv~~G~Ee~~g~S~~N~~EA~~V~~lV~~L~~~~ 432 (1939)
|++|.|.++.|..|..+.-..... ... ..+...++.++.. . ....||+.|++.+..++...
T Consensus 278 Rs~~~I~~~an~~~~~~~~~~~~~-----l~~---~~~~g~~i~~~~~-~----------~~~~e~~~va~~I~~l~~~~ 338 (673)
T 1uaa_A 278 RSSGRILKAANILIANNPHVFEKR-----LFS---ELGYGAELKVLSA-N----------NEEHEAERVTGELIAHHFVN 338 (673)
T ss_dssp SSCHHHHHHHHHHHHTSCCSSCCC-----CCB---SSCCCCCBEEEEC-S----------SHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhchhccccc-----ccc---cCCCCCCceEEec-C----------CHHHHHHHHHHHHHHHHhcc
Confidence 999999999998887543211110 000 0011123444443 1 13579999999999998432
Q ss_pred CCCCcceE
Q 035724 433 NVSNLCSS 440 (1939)
Q Consensus 433 ~~~~~~I~ 440 (1939)
+.....|+
T Consensus 339 g~~~~dia 346 (673)
T 1uaa_A 339 KTQYKDYA 346 (673)
T ss_dssp CCCTTTEE
T ss_pred CCCccCEE
Confidence 33333444
No 24
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.61 E-value=9.3e-06 Score=103.17 Aligned_cols=99 Identities=11% Similarity=0.021 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHhcC----hHHHHHHHHHHHHcCCHHHHHHHHHHcc--------CHHHHHHHHHhcCChHHHHHHHHhhh
Q 035724 1149 EYERAGRIYLERRE----EPELEKAGECFFLAGCYKLAADVYAKGK--------FFSECLAVCSKGKLFEIGLQYMNHWK 1216 (1939)
Q Consensus 1149 ~~~~A~eLY~e~~~----e~~~~qaAe~fE~~G~y~eAAelY~kag--------d~dkAI~my~k~k~fd~airLv~q~~ 1216 (1939)
++++|.+++.+... ...+...|..+.+.|++++|.++|.++- -+...+.+|.+.+++++|+.+.++..
T Consensus 287 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 366 (597)
T 2xpi_A 287 ELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV 366 (597)
T ss_dssp HHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34445555544322 1225556677777777777777776652 13445556666777777776666433
Q ss_pred hcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 035724 1217 QHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVK 1268 (1939)
Q Consensus 1217 d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~ 1268 (1939)
+..+.+ .......+..|.+.|++++|++++.
T Consensus 367 ~~~~~~---------------------~~~~~~l~~~~~~~g~~~~A~~~~~ 397 (597)
T 2xpi_A 367 DRHPEK---------------------AVTWLAVGIYYLCVNKISEARRYFS 397 (597)
T ss_dssp HHCTTS---------------------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhCccc---------------------HHHHHHHHHHHHHhccHHHHHHHHH
Confidence 211110 1111223556777777777777665
No 25
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=98.57 E-value=1.3e-08 Score=141.85 Aligned_cols=76 Identities=24% Similarity=0.280 Sum_probs=49.4
Q ss_pred CceEEEEeecccCCCCCEEEEeccCCCCCccccccCCCCC--C---CCC---ChhHhhhhhHHHHhhhheeeeccccceE
Q 035724 952 KQALVLTIVESKGLEFQVIHYTSQCCNSPFKHALFDSTSP--G---SFP---SFNEAKHNVLCSELKQLYVAITRTRQRL 1023 (1939)
Q Consensus 952 ~~~lVmTihesKGLEF~~Vil~~~~~~~~~~~~~~~~~~~--~---~~~---~~~~~~~~~l~~Elk~LYVA~TRAr~~L 1023 (1939)
+...|||||+|||||||+|||.++.........++..... . ... .......+.+.+|+|+||||+||||++|
T Consensus 734 d~V~ImTIHkSKGLEfpvVfl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~Ee~RLlYVAlTRAk~~L 813 (1180)
T 1w36_B 734 HLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHC 813 (1180)
T ss_dssp GSEEEEETTTTSSCCEEEEEETTTTCCCCCCSCEEECTTTCCEEEESSCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred CeEEEEEEeccCCCcCCEEEEeccccCCCCCCCeeecCCCcceeecCCCcHHHHHHHHHHHHHHHhhHHhhhhcchhhhe
Confidence 4678999999999999999998876521100011110000 0 000 0112234567899999999999999999
Q ss_pred EEec
Q 035724 1024 WIWE 1027 (1939)
Q Consensus 1024 ~I~d 1027 (1939)
+|+-
T Consensus 814 ~l~~ 817 (1180)
T 1w36_B 814 SLGV 817 (1180)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9974
No 26
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.57 E-value=2.6e-06 Score=102.61 Aligned_cols=286 Identities=12% Similarity=0.038 Sum_probs=148.3
Q ss_pred cCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCC-HHHH
Q 035724 1062 ASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGK-ADSA 1140 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~-~~kA 1140 (1939)
...++.|..+|..+...|++++|+.+|.++-..... ...++...... .....+..++...|.++.++.-..-. ...-
T Consensus 64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 141 (388)
T 1w3b_A 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD-FIDGYINLAAA-LVAAGDMEGAVQAYVSALQYNPDLYCVRSDL 141 (388)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHHSCSSHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcc-hHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 456778999999999999999999999987321100 00000000000 00001111222222222111000000 0011
Q ss_pred HHHHHHhCCHHHHHHHHHHhc-----ChHHHHHHHHHHHHcCCHHHHHHHHHHccC--------HHHHHHHHHhcCChHH
Q 035724 1141 AKCFYNLGEYERAGRIYLERR-----EEPELEKAGECFFLAGCYKLAADVYAKGKF--------FSECLAVCSKGKLFEI 1207 (1939)
Q Consensus 1141 aecy~kag~~~~A~eLY~e~~-----~e~~~~qaAe~fE~~G~y~eAAelY~kagd--------~dkAI~my~k~k~fd~ 1207 (1939)
..++...|++++|.+.|.+.. ....+...|..+...|++.+|.+.|.++-. +.....++...+.+++
T Consensus 142 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~ 221 (388)
T 1w3b_A 142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDR 221 (388)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence 223333455555555554431 113367778888999999999999888622 2334456777888888
Q ss_pred HHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHHhhcCHH
Q 035724 1208 GLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRSVDLMRKFLKSLSCFD 1287 (1939)
Q Consensus 1208 airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s~eeA~~~L~k~~~ld 1287 (1939)
|+...++-.+..+.. .......+..|...|++++|++.+...-..+- .....+-
T Consensus 222 A~~~~~~al~~~p~~---------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~ 275 (388)
T 1w3b_A 222 AVAAYLRALSLSPNH---------------------AVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-----HFPDAYC 275 (388)
T ss_dssp HHHHHHHHHHHCTTC---------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-----SCHHHHH
T ss_pred HHHHHHHHHhhCcCC---------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----CCHHHHH
Confidence 888776432221111 01112236678889999988887763211100 0000122
Q ss_pred HHHHHHHhcCCHHHHHHHHHHc-----CC---HHHHHHHHHHhCCHHHHHHHHHHHh-----hhhccccCCCCCCCCcch
Q 035724 1288 DLLVLEEESGNFMDAANIARLR-----GD---IFLAVDLLQKAGCFKEACNVTLNHV-----ISNSLWSPGSKGWPLKQF 1354 (1939)
Q Consensus 1288 ea~ell~e~G~feEAa~Lak~~-----Gk---~~eAi~my~kAG~~~eA~rva~~~~-----~~~~l~~~~~~~~~~~~~ 1354 (1939)
..+..+...|++++|...+++. .. +..-+.+|.+.|++++|...+.+-. .+..+..-+..-...+++
T Consensus 276 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 355 (388)
T 1w3b_A 276 NLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL 355 (388)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Confidence 3445667777777776655432 11 1223556666777777776665542 111111122222334568
Q ss_pred hhHHHHHHHHHhHhhhhhHHH
Q 035724 1355 TKKKELLEKAKSLAKNESNQF 1375 (1939)
Q Consensus 1355 ~~ae~ll~~A~~~~~~~s~~~ 1375 (1939)
.+|.+++.+|.+..-.....+
T Consensus 356 ~~A~~~~~~a~~~~p~~~~a~ 376 (388)
T 1w3b_A 356 QEALMHYKEAIRISPTFADAY 376 (388)
T ss_dssp HHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHHHHHHhhCCCCHHHH
Confidence 999999999987654444433
No 27
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=98.52 E-value=2.8e-07 Score=122.34 Aligned_cols=137 Identities=12% Similarity=0.012 Sum_probs=84.0
Q ss_pred CCcEEEEeCCcccchHHhhccc-cCCCcceEEEEeccccCCcceeccccccccccCCHHHHHHhc--CCccccccccccC
Q 035724 278 QLKFLVIDEAAQLKEVESAIPL-KLPGIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSNL--GQAKHLLSIQYRM 354 (1939)
Q Consensus 278 ~fdvVIIDEASQ~~E~e~lipL-~~~~~~rlVLiGD~~QLpPvV~s~~~~~~gl~~SLFeRL~~~--~~~~~~L~~QYRm 354 (1939)
.|++|+|||+...+..+.-+.- .......+++|||++|--- ...|-+...|.++.+. +...+.|.++||+
T Consensus 216 rf~~IlVDEfQDtn~~Q~~ll~~L~~~~~~l~vVGD~~QsIY-------~fRGA~~~~~~~f~~~~~~~~~i~L~~NyRS 288 (724)
T 1pjr_A 216 KFQYIHIDEYQDTNRAQYTLVKKLAERFQNICAVGDADQSIY-------RWRGADIQNILSFERDYPNAKVILLEQNYRS 288 (724)
T ss_dssp HCSEEEESSGGGCCHHHHHHHHHHHTTTCCEEEEECGGGCCC-------GGGTCCTHHHHTHHHHSTTCEEEEECBCSSS
T ss_pred hCCEEEEEhHhcCCHHHHHHHHHHHcCCCeEEEEECchhhcc-------cccCCCHHHHHHHHHHCCCCcEEECCCCCCC
Confidence 5799999999999887543322 1223468999999999421 1122233444444432 3457899999999
Q ss_pred ChhhhccCcccccCCCCCCCCcccccccccccCCCCCCCCeEEEEcCCCccccCCCCcCCHHHHHHHHHHHHHHHHcCCC
Q 035724 355 HPSISSFPNSYFYDNKIFDSPNVKEKNYEKRFLPGRMYGPYSFINVLDGREESIAHSYRNMVEVFVVMKILLNLYKVHNV 434 (1939)
Q Consensus 355 hp~I~~f~S~~FY~gkL~~~~~v~~~~~~~~~l~~p~~~p~~Fidv~~G~Ee~~g~S~~N~~EA~~V~~lV~~L~~~~~~ 434 (1939)
++.|.++.|..+.++.-....... ...+.-.++.++.. .....||..|+..+..++...+.
T Consensus 289 t~~Il~~an~li~~n~~~~~k~l~--------~~~~~g~~i~~~~~-----------~~~~~Ea~~va~~I~~l~~~~g~ 349 (724)
T 1pjr_A 289 TKRILQAANEVIEHNVNRKPKRIW--------TENPEGKPILYYEA-----------MNEADEAQFVAGRIREAVERGER 349 (724)
T ss_dssp CHHHHHHHHHHHTTCSSCCCCCCB--------CSSCCCCCEEEEEE-----------EEHHHHHHHHHHHHHHHHTTTSC
T ss_pred CHHHHHHHHHHHHhCccccCcccc--------cccCCCCceEEEec-----------CCHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999988765322211110 00111124555443 11357999999999999874333
Q ss_pred CCcceE
Q 035724 435 SNLCSS 440 (1939)
Q Consensus 435 ~~~~I~ 440 (1939)
....|+
T Consensus 350 ~~~diA 355 (724)
T 1pjr_A 350 RYRDFA 355 (724)
T ss_dssp CGGGEE
T ss_pred Chhhee
Confidence 334454
No 28
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.49 E-value=1.1e-05 Score=94.41 Aligned_cols=180 Identities=13% Similarity=-0.018 Sum_probs=107.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHccC--------HHHHHHHHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhH
Q 035724 1168 KAGECFFLAGCYKLAADVYAKGKF--------FSECLAVCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEI 1239 (1939)
Q Consensus 1168 qaAe~fE~~G~y~eAAelY~kagd--------~dkAI~my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~ 1239 (1939)
..|..+...|++++|.++|.++-. +-....++.+.+++++|+...++..+..+..
T Consensus 125 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----------------- 187 (359)
T 3ieg_A 125 SQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDN----------------- 187 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC-----------------
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----------------
Confidence 347889999999999999988632 2334557788899999998888544322211
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccH----HHHHHHHHhhc---CHHHHHHHHHhcCCHHHHHHHHHHc---
Q 035724 1240 NKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRSV----DLMRKFLKSLS---CFDDLLVLEEESGNFMDAANIARLR--- 1309 (1939)
Q Consensus 1240 ~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s~----eeA~~~L~k~~---~ldea~ell~e~G~feEAa~Lak~~--- 1309 (1939)
...+...+..|...|+++.|++.+...-.. ..+..++.... ..-..+..+...|++++|...++..
T Consensus 188 ----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 263 (359)
T 3ieg_A 188 ----TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 263 (359)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 011223366788889998888877633211 11111111111 0112245677788888887766542
Q ss_pred --CCHH-------HHHHHHHHhCCHHHHHHHHHHHh-----hhhccccCCCCCCCCcchhhHHHHHHHHHhHh
Q 035724 1310 --GDIF-------LAVDLLQKAGCFKEACNVTLNHV-----ISNSLWSPGSKGWPLKQFTKKKELLEKAKSLA 1368 (1939)
Q Consensus 1310 --Gk~~-------eAi~my~kAG~~~eA~rva~~~~-----~~~~l~~~~~~~~~~~~~~~ae~ll~~A~~~~ 1368 (1939)
..+. .-+.+|.+.|++++|...+.+-. .+..+..-+......+++.+|.+.+.+|.++.
T Consensus 264 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 264 EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2211 13467777888888887776653 22233333333344567788888888887743
No 29
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.47 E-value=2.6e-06 Score=106.35 Aligned_cols=206 Identities=13% Similarity=0.050 Sum_probs=116.9
Q ss_pred CCHHHHHHHHHHhcCh------------HHHHHHHHHHHHcCCHHHHHHHHHHccC-------HHHHHHHHHhcCChHHH
Q 035724 1148 GEYERAGRIYLERREE------------PELEKAGECFFLAGCYKLAADVYAKGKF-------FSECLAVCSKGKLFEIG 1208 (1939)
Q Consensus 1148 g~~~~A~eLY~e~~~e------------~~~~qaAe~fE~~G~y~eAAelY~kagd-------~dkAI~my~k~k~fd~a 1208 (1939)
+++++|.++|.+.... ..+...|.++...|++++|.++|.++-. +-....++.+.+++++|
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 295 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEF 295 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHH
T ss_pred HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHH
Confidence 3667777777665221 1255667888888888888888887732 22233355567888888
Q ss_pred HHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHHhhcCHHH
Q 035724 1209 LQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRSVDLMRKFLKSLSCFDD 1288 (1939)
Q Consensus 1209 irLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s~eeA~~~L~k~~~lde 1288 (1939)
+.+.++..+..+.. ...+...+..|...|+++.|++.+...-..+. .....+-.
T Consensus 296 ~~~~~~~~~~~~~~---------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~ 349 (537)
T 3fp2_A 296 FKFFQKAVDLNPEY---------------------PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-----ENVYPYIQ 349 (537)
T ss_dssp HHHHHHHHHHCTTC---------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCSHHHHH
T ss_pred HHHHHHHhccCCCC---------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-----CCHHHHHH
Confidence 88877543322111 11122336778888998888887763321110 00011223
Q ss_pred HHHHHHhcCCHHHHHHHHHHc-----C---CHHHHHHHHHHhCCHHHHHHHHHHHhhh------------------hccc
Q 035724 1289 LLVLEEESGNFMDAANIARLR-----G---DIFLAVDLLQKAGCFKEACNVTLNHVIS------------------NSLW 1342 (1939)
Q Consensus 1289 a~ell~e~G~feEAa~Lak~~-----G---k~~eAi~my~kAG~~~eA~rva~~~~~~------------------~~l~ 1342 (1939)
.+..+...|++++|...++.. + -...-+.+|.+.|++++|...+.+-.-. .++.
T Consensus 350 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~ 429 (537)
T 3fp2_A 350 LACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILA 429 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHH
Confidence 456667778888876665532 1 1123366677778888877776654211 1111
Q ss_pred cC---CCCCCCCcchhhHHHHHHHHHhHhhhhhHHHHHHH
Q 035724 1343 SP---GSKGWPLKQFTKKKELLEKAKSLAKNESNQFYEFV 1379 (1939)
Q Consensus 1343 ~~---~~~~~~~~~~~~ae~ll~~A~~~~~~~s~~~~~~~ 1379 (1939)
.+ +..-++.+++.+|+..+.+|...........+...
T Consensus 430 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 469 (537)
T 3fp2_A 430 RQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLA 469 (537)
T ss_dssp HHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 11 22223337888888888888886665555444444
No 30
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=98.47 E-value=9.8e-07 Score=116.77 Aligned_cols=124 Identities=10% Similarity=0.036 Sum_probs=89.5
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHHHHHhcCChHHHHHHHHhhhh
Q 035724 1138 DSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKFFSECLAVCSKGKLFEIGLQYMNHWKQ 1217 (1939)
Q Consensus 1138 ~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd~dkAI~my~k~k~fd~airLv~q~~d 1217 (1939)
....++....|+++.|.+++...-.+..|++.|+.+.+.|+++.|+++|.++++++++..+|...++.+.+.++.+.-.
T Consensus 656 ~~~f~~~l~~~~~~~A~~~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~- 734 (814)
T 3mkq_A 656 DQKFELALKVGQLTLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAE- 734 (814)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred chheehhhhcCCHHHHHHHHHhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHH-
Confidence 3345667889999999999887666778999999999999999999999999999999999998888775555543100
Q ss_pred cccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHHhhcCHH
Q 035724 1218 HADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRSVDLMRKFLKSLSCFD 1287 (1939)
Q Consensus 1218 ~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s~eeA~~~L~k~~~ld 1287 (1939)
.....+.|...|++.|++++|+++++..+.|++|..+.++++..+
T Consensus 735 -------------------------~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~~~~~~ 779 (814)
T 3mkq_A 735 -------------------------TTGKFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTYGLGD 779 (814)
T ss_dssp -------------------------HTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCCH
T ss_pred -------------------------HcCchHHHHHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHhCCCh
Confidence 001122335556666666666666666666666666665555433
No 31
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.46 E-value=1.7e-05 Score=95.79 Aligned_cols=265 Identities=12% Similarity=0.087 Sum_probs=148.3
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 035724 1066 EEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCFY 1145 (1939)
Q Consensus 1066 eeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy~ 1145 (1939)
..+..+|..++..++|++|+.+|.++-.... .++......+...+..|...|++++|+++|.
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~------------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 110 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGT------------------EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHK 110 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC------------------SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc------------------cChhHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4677899999999999999999998743100 1111112245566666777777777766655
Q ss_pred HhCCHHHHHHHHHHhcCh----HHHHHHHHHHHHcCCHHHHHHHHHHccCH--------------HHHHHHHHhcCC---
Q 035724 1146 NLGEYERAGRIYLERREE----PELEKAGECFFLAGCYKLAADVYAKGKFF--------------SECLAVCSKGKL--- 1204 (1939)
Q Consensus 1146 kag~~~~A~eLY~e~~~e----~~~~qaAe~fE~~G~y~eAAelY~kagd~--------------dkAI~my~k~k~--- 1204 (1939)
++- +++.+.... ..+...|.++...|++++|.++|.++-.. .....+|...++
T Consensus 111 ~al------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 184 (411)
T 4a1s_A 111 HDL------TLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLG 184 (411)
T ss_dssp HHH------HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH------HHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccc
Confidence 432 222221111 12455677777777777777777665332 111223444555
Q ss_pred --------------hHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 035724 1205 --------------FEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSF 1270 (1939)
Q Consensus 1205 --------------fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~ 1270 (1939)
+++|+.+.++-.+.. ....... .....+...+..|...|++++|.+++...
T Consensus 185 ~~~~~~~~~~a~~~~~~A~~~~~~al~~~--------------~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a 249 (411)
T 4a1s_A 185 QRNPGKFGDDVKEALTRAVEFYQENLKLM--------------RDLGDRG-AQGRACGNLGNTYYLLGDFQAAIEHHQER 249 (411)
T ss_dssp HHSTTCCCHHHHHHHHHHHHHHHHHHHHH--------------HHHTCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHHHHH--------------HHcCCHH-HHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 555555544211100 0000000 01112334477788999999888877632
Q ss_pred ccHHHHHHHHHhhc-------CHHHHHHHHHhcCCHHHHHHHHHHc-------CCH-------HHHHHHHHHhCCHHHHH
Q 035724 1271 RSVDLMRKFLKSLS-------CFDDLLVLEEESGNFMDAANIARLR-------GDI-------FLAVDLLQKAGCFKEAC 1329 (1939)
Q Consensus 1271 ~s~eeA~~~L~k~~-------~ldea~ell~e~G~feEAa~Lak~~-------Gk~-------~eAi~my~kAG~~~eA~ 1329 (1939)
- +.....+ .+-..+.++...|++++|...+++. +.. ..-+.+|.+.|++++|.
T Consensus 250 l------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (411)
T 4a1s_A 250 L------RIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAI 323 (411)
T ss_dssp H------HHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred H------HHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 2 2211222 2344456677778888776655432 221 12345566677777776
Q ss_pred HHHHHHh-----------hhhccccCCCCCCCCcchhhHHHHHHHHHhHhhhhhHHH
Q 035724 1330 NVTLNHV-----------ISNSLWSPGSKGWPLKQFTKKKELLEKAKSLAKNESNQF 1375 (1939)
Q Consensus 1330 rva~~~~-----------~~~~l~~~~~~~~~~~~~~~ae~ll~~A~~~~~~~s~~~ 1375 (1939)
..+.+.. .+.+++.-+......+++.+|.+++.+|.++++.+...-
T Consensus 324 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 380 (411)
T 4a1s_A 324 EYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXXXXX 380 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccch
Confidence 6655442 123444445555556678888888888888887776655
No 32
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=98.42 E-value=3.6e-06 Score=111.31 Aligned_cols=97 Identities=12% Similarity=-0.002 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHHHHH
Q 035724 1121 NVNLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKFFSECLAVCS 1200 (1939)
Q Consensus 1121 ~~~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd~dkAI~my~ 1200 (1939)
...|.++|+++++.|+++.|++||.++++++.+..+|........+.++|+..+..|++..|..+|.+.|++++|++||.
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHH
Confidence 56899999999999999999999999999999999998755566789999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHhhhh
Q 035724 1201 KGKLFEIGLQYMNHWKQ 1217 (1939)
Q Consensus 1201 k~k~fd~airLv~q~~d 1217 (1939)
+.+.|++|+.++++|..
T Consensus 761 ~~~~~~~A~~lA~~~~~ 777 (814)
T 3mkq_A 761 KSQRFSEAAFLGSTYGL 777 (814)
T ss_dssp HTTCHHHHHHHHHHTTC
T ss_pred HcCChHHHHHHHHHhCC
Confidence 99999999999997664
No 33
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.42 E-value=1.1e-05 Score=92.81 Aligned_cols=262 Identities=11% Similarity=0.046 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHH
Q 035724 1065 PEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCF 1144 (1939)
Q Consensus 1065 peeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy 1144 (1939)
...|...|..++..++|++|+.+|.++-... ..++......+...+..|...|++++|+++|
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 66 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG------------------TEDLKTLSAIYSQLGNAYFYLHDYAKALEYH 66 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC------------------cccHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3578899999999999999999999873310 0112222334667777888888888887776
Q ss_pred HHhCCHHHHHHHHHHhcCh----HHHHHHHHHHHHcCCHHHHHHHHHHccCH--------------HHHHHHHHhcCC--
Q 035724 1145 YNLGEYERAGRIYLERREE----PELEKAGECFFLAGCYKLAADVYAKGKFF--------------SECLAVCSKGKL-- 1204 (1939)
Q Consensus 1145 ~kag~~~~A~eLY~e~~~e----~~~~qaAe~fE~~G~y~eAAelY~kagd~--------------dkAI~my~k~k~-- 1204 (1939)
.++-.. +.+.... ..+...|.++...|++++|.+.|.++-.. .....+|...++
T Consensus 67 ~~al~~------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 140 (338)
T 3ro2_A 67 HHDLTL------ARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSF 140 (338)
T ss_dssp HHHHHH------HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHH------hhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCccc
Confidence 654332 2221111 12456678888888888888877765222 112223444555
Q ss_pred ------------------hHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 035724 1205 ------------------FEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKF 1266 (1939)
Q Consensus 1205 ------------------fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~ 1266 (1939)
+++|+.+.++-.+.. ....... .....+...+..|...|+++.|.++
T Consensus 141 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~--------------~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~ 205 (338)
T 3ro2_A 141 GCPGPQDTGEFPEDVRNALQAAVDLYEENLSLV--------------TALGDRA-AQGRAFGNLGNTHYLLGNFRDAVIA 205 (338)
T ss_dssp SSSSCC----CCHHHHHHHHHHHHHHHHHHHHH--------------HHHTCHH-HHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHH--------------HhcCCHH-HHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 555555554321110 0000000 0111233346778888999888887
Q ss_pred HHHhccHHHHHHHHHhhc-------CHHHHHHHHHhcCCHHHHHHHHHHc-------CCH-------HHHHHHHHHhCCH
Q 035724 1267 VKSFRSVDLMRKFLKSLS-------CFDDLLVLEEESGNFMDAANIARLR-------GDI-------FLAVDLLQKAGCF 1325 (1939)
Q Consensus 1267 ~~~~~s~eeA~~~L~k~~-------~ldea~ell~e~G~feEAa~Lak~~-------Gk~-------~eAi~my~kAG~~ 1325 (1939)
+...-.. ..+.+ .+-..+.++...|++++|...++.. +.. ..-+.+|.+.|++
T Consensus 206 ~~~a~~~------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 279 (338)
T 3ro2_A 206 HEQRLLI------AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY 279 (338)
T ss_dssp HHHHHHH------HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHH------HHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCH
Confidence 7532211 11111 2233445666677777776554421 221 1123445556666
Q ss_pred HHHHHHHHHHh-----------hhhccccCCCCCCCCcchhhHHHHHHHHHhHhhhh
Q 035724 1326 KEACNVTLNHV-----------ISNSLWSPGSKGWPLKQFTKKKELLEKAKSLAKNE 1371 (1939)
Q Consensus 1326 ~eA~rva~~~~-----------~~~~l~~~~~~~~~~~~~~~ae~ll~~A~~~~~~~ 1371 (1939)
++|...+.+.. .+.+++.-+......+++.+|...+.+|..+++.+
T Consensus 280 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 280 EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 66655544331 12233333444444456777777777777665543
No 34
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.41 E-value=1.4e-05 Score=99.00 Aligned_cols=49 Identities=16% Similarity=0.036 Sum_probs=30.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHccC-------HHHHHHHHHhcCChHHHHHHHHh
Q 035724 1166 LEKAGECFFLAGCYKLAADVYAKGKF-------FSECLAVCSKGKLFEIGLQYMNH 1214 (1939)
Q Consensus 1166 ~~qaAe~fE~~G~y~eAAelY~kagd-------~dkAI~my~k~k~fd~airLv~q 1214 (1939)
+...|.++...|++++|.++|.++-. +.....++...+++++|+...++
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 295 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDK 295 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45567777777777777777776521 22233455666777777666664
No 35
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.41 E-value=1.5e-05 Score=97.37 Aligned_cols=285 Identities=15% Similarity=0.031 Sum_probs=155.9
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHhCCc--chHH----HHHHhh---hHHhh----hhhhcCCchHhHHHHHHHHHH
Q 035724 1064 SPEEWKSRGIKLFHEHNYDMATICFEKAKDS--YWEG----RSKATG---LKATA----DRCRSSNPKQANVNLREAAKI 1130 (1939)
Q Consensus 1064 tpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~--~~~~----l~kA~~---l~e~a----~~~~s~~~~ea~~~y~eAA~l 1130 (1939)
+++.|..+|..++..++|++|+.+|.++-.. .... +...+. ..+.+ +.....+|. ....+...+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHH
Confidence 3456777788777788888888888775321 0000 000000 00000 000000111 12234455566
Q ss_pred HHHcCCHHHHHHHHHHhCCH----H---HHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC--------HHHH
Q 035724 1131 FEAIGKADSAAKCFYNLGEY----E---RAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF--------FSEC 1195 (1939)
Q Consensus 1131 Ye~~G~~~kAaecy~kag~~----~---~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd--------~dkA 1195 (1939)
|...|++++|.++|.++-.. . .+...+........+...|..+...|++++|.++|.++-. +-..
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 183 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELR 183 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 66666666666666554211 1 1110000000001133457889999999999999988632 2335
Q ss_pred HHHHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccH--
Q 035724 1196 LAVCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRSV-- 1273 (1939)
Q Consensus 1196 I~my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s~-- 1273 (1939)
..+|.+.+++++|+.+.++..+..+.. ...+...+..|...|+++.|++.+...-..
T Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~~~~---------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 242 (450)
T 2y4t_A 184 AECFIKEGEPRKAISDLKAASKLKNDN---------------------TEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 242 (450)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHCSC---------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCC---------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 567888999999998887533321111 112223367788999999999877643211
Q ss_pred --HHHHHHHHhh---cCHHHHHHHHHhcCCHHHHHHHHHHc-----CC-------HHHHHHHHHHhCCHHHHHHHHHHHh
Q 035724 1274 --DLMRKFLKSL---SCFDDLLVLEEESGNFMDAANIARLR-----GD-------IFLAVDLLQKAGCFKEACNVTLNHV 1336 (1939)
Q Consensus 1274 --eeA~~~L~k~---~~ldea~ell~e~G~feEAa~Lak~~-----Gk-------~~eAi~my~kAG~~~eA~rva~~~~ 1336 (1939)
..+...+... ...-..+..+...|++++|...+++. +. +..-+.+|.+.|++++|...+.+-+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 322 (450)
T 2y4t_A 243 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322 (450)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1111111111 11122256777888888887766543 22 1223677888899998888777653
Q ss_pred -----hhhccccCCCCCCCCcchhhHHHHHHHHHhHhhh
Q 035724 1337 -----ISNSLWSPGSKGWPLKQFTKKKELLEKAKSLAKN 1370 (1939)
Q Consensus 1337 -----~~~~l~~~~~~~~~~~~~~~ae~ll~~A~~~~~~ 1370 (1939)
.+..+..-+......+++.+|+..+.+|.++.-.
T Consensus 323 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 323 QMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred HhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 2334444444455667788999999888875433
No 36
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.39 E-value=4e-05 Score=97.36 Aligned_cols=179 Identities=8% Similarity=-0.063 Sum_probs=89.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHccC--------HHHHHHHHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhh
Q 035724 1166 LEKAGECFFLAGCYKLAADVYAKGKF--------FSECLAVCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSM 1237 (1939)
Q Consensus 1166 ~~qaAe~fE~~G~y~eAAelY~kagd--------~dkAI~my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~ 1237 (1939)
+...|..+.+.|++++|.++|.++-+ +...+.+|.+.|++++|+++.++..+..+.+
T Consensus 376 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--------------- 440 (597)
T 2xpi_A 376 WLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT--------------- 440 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTC---------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---------------
Confidence 44445566666666666666655411 2233445555666666666655322211100
Q ss_pred hHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHHhhcCHHHHHHHHHhcCCHHHHHHHHHHc-------C
Q 035724 1238 EINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRSVDLMRKFLKSLSCFDDLLVLEEESGNFMDAANIARLR-------G 1310 (1939)
Q Consensus 1238 ~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s~eeA~~~L~k~~~ldea~ell~e~G~feEAa~Lak~~-------G 1310 (1939)
...+...+..|.+.|++++|.+++...-.... .....+...+..+...|++++|.+++++. +
T Consensus 441 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 509 (597)
T 2xpi_A 441 ------HLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-----YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQ 509 (597)
T ss_dssp ------SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred ------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccc
Confidence 00111224556677777777766653211100 00011233456667777777776655432 1
Q ss_pred -CH-------HHHHHHHHHhCCHHHHHHHHHHHh-----hhhccccCCCCCCCCcchhhHHHHHHHHHhHhhh
Q 035724 1311 -DI-------FLAVDLLQKAGCFKEACNVTLNHV-----ISNSLWSPGSKGWPLKQFTKKKELLEKAKSLAKN 1370 (1939)
Q Consensus 1311 -k~-------~eAi~my~kAG~~~eA~rva~~~~-----~~~~l~~~~~~~~~~~~~~~ae~ll~~A~~~~~~ 1370 (1939)
.+ ..-+.+|.+.|++++|...+.+-. .+.++..-+......+++.+|++++.+|.++.-.
T Consensus 510 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 510 SNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp CCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 11 223667777888888877776542 1111111122222345678888888888775433
No 37
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.38 E-value=3.4e-05 Score=92.09 Aligned_cols=264 Identities=12% Similarity=0.055 Sum_probs=139.7
Q ss_pred CCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHH
Q 035724 1063 SSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAK 1142 (1939)
Q Consensus 1063 StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAae 1142 (1939)
.+-..|...|..++..++|++|+.+|.++-.... .++......+...+..|...|++++|.+
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 68 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT------------------EDLKTLSAIYSQLGNAYFYLHDYAKALE 68 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC------------------SCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc------------------ccHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3455789999999999999999999998733100 1111112345566666667777777766
Q ss_pred HHHHhCCHHHHHHHHHHhcCh----HHHHHHHHHHHHcCCHHHHHHHHHHccCHHH--------------HHHHHHhcCC
Q 035724 1143 CFYNLGEYERAGRIYLERREE----PELEKAGECFFLAGCYKLAADVYAKGKFFSE--------------CLAVCSKGKL 1204 (1939)
Q Consensus 1143 cy~kag~~~~A~eLY~e~~~e----~~~~qaAe~fE~~G~y~eAAelY~kagd~dk--------------AI~my~k~k~ 1204 (1939)
+|.++- +++...... ..+...|.++...|++++|.++|.++-+... ...+|...++
T Consensus 69 ~~~~al------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 69 YHHHDL------TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp HHHHHH------HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH------HHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence 655432 222221111 1244556677777777777766665532211 1123334444
Q ss_pred --------------------hHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHH
Q 035724 1205 --------------------FEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMM 1264 (1939)
Q Consensus 1205 --------------------fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~ 1264 (1939)
+++|+.+.++-.+.. ...... ......+...+..|...|+++.|+
T Consensus 143 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~--------------~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 207 (406)
T 3sf4_A 143 SFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLV--------------TALGDR-AAQGRAFGNLGNTHYLLGNFRDAV 207 (406)
T ss_dssp TCC-------CCCCHHHHHHHHHHHHHHHHHHHHH--------------HHTTCH-HHHHHHHHHHHHHHHHHTBHHHHH
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH--------------HhccCc-HHHHHHHHHHHHHHHHccCHHHHH
Confidence 555555544211110 000000 001112233467788888888888
Q ss_pred HHHHHhccHHHHHHHHHhhc-------CHHHHHHHHHhcCCHHHHHHHHHHc-------CCH-------HHHHHHHHHhC
Q 035724 1265 KFVKSFRSVDLMRKFLKSLS-------CFDDLLVLEEESGNFMDAANIARLR-------GDI-------FLAVDLLQKAG 1323 (1939)
Q Consensus 1265 ~~~~~~~s~eeA~~~L~k~~-------~ldea~ell~e~G~feEAa~Lak~~-------Gk~-------~eAi~my~kAG 1323 (1939)
+++...- ....+.+ .+...+.++...|++++|...+++. +.. ..-+.+|.+.|
T Consensus 208 ~~~~~al------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 281 (406)
T 3sf4_A 208 IAHEQRL------LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ 281 (406)
T ss_dssp HHHHHHH------HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHH------HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhC
Confidence 7765322 1111222 2334445666777777776554432 221 12244555666
Q ss_pred CHHHHHHHHHHHh-----------hhhccccCCCCCCCCcchhhHHHHHHHHHhHhhhh
Q 035724 1324 CFKEACNVTLNHV-----------ISNSLWSPGSKGWPLKQFTKKKELLEKAKSLAKNE 1371 (1939)
Q Consensus 1324 ~~~eA~rva~~~~-----------~~~~l~~~~~~~~~~~~~~~ae~ll~~A~~~~~~~ 1371 (1939)
++++|...+.+-. .+.++..-+......+++.+|.+.+.+|..+++..
T Consensus 282 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 340 (406)
T 3sf4_A 282 DYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 340 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 6666665554432 12333444444444566788888888888776655
No 38
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.34 E-value=1.5e-05 Score=95.90 Aligned_cols=272 Identities=13% Similarity=-0.034 Sum_probs=144.8
Q ss_pred cCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcC-----C
Q 035724 1062 ASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIG-----K 1136 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G-----~ 1136 (1939)
..++.-|..+|..++..+++++|...|.++-..... ...++...... ....+.+.+|.+.|.++- .
T Consensus 30 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~-~~~~~~~lg~~--------~~~~g~~~~A~~~~~~al~~~p~~ 100 (388)
T 1w3b_A 30 PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNV--------YKERGQLQEAIEHYRHALRLKPDF 100 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH--------HHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHH--------HHHCCCHHHHHHHHHHHHHcCcch
Confidence 455677888888888888888888888776321110 00001000000 001111222222222210 0
Q ss_pred ---HHHHHHHHHHhCCHHHHHHHHHHhc-----ChHHHHHHHHHHHHcCCHHHHHHHHHHccC--------HHHHHHHHH
Q 035724 1137 ---ADSAAKCFYNLGEYERAGRIYLERR-----EEPELEKAGECFFLAGCYKLAADVYAKGKF--------FSECLAVCS 1200 (1939)
Q Consensus 1137 ---~~kAaecy~kag~~~~A~eLY~e~~-----~e~~~~qaAe~fE~~G~y~eAAelY~kagd--------~dkAI~my~ 1200 (1939)
+..-+.+|.+.|++++|.+.|.+.. ....+...|.++...|++++|.++|.++-. +.....++.
T Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 180 (388)
T 1w3b_A 101 IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 180 (388)
T ss_dssp HHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 1112334445555555655555431 112356678888888888888888877622 233445677
Q ss_pred hcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHH
Q 035724 1201 KGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRSVDLMRKFL 1280 (1939)
Q Consensus 1201 k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s~eeA~~~L 1280 (1939)
+.+++++|+...++-.+..+.. ...+...+..|...|++++|++.+...-..+-
T Consensus 181 ~~g~~~~A~~~~~~al~~~p~~---------------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p----- 234 (388)
T 1w3b_A 181 AQGEIWLAIHHFEKAVTLDPNF---------------------LDAYINLGNVLKEARIFDRAVAAYLRALSLSP----- 234 (388)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTC---------------------HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-----
T ss_pred HcCCHHHHHHHHHHHHhcCCCc---------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-----
Confidence 7888888888777433211100 11122336678888888888876653211110
Q ss_pred HhhcCHHHHHHHHHhcCCHHHHHHHHHHc-----CCH---HHHHHHHHHhCCHHHHHHHHHHHh-----hhhccccCCCC
Q 035724 1281 KSLSCFDDLLVLEEESGNFMDAANIARLR-----GDI---FLAVDLLQKAGCFKEACNVTLNHV-----ISNSLWSPGSK 1347 (1939)
Q Consensus 1281 ~k~~~ldea~ell~e~G~feEAa~Lak~~-----Gk~---~eAi~my~kAG~~~eA~rva~~~~-----~~~~l~~~~~~ 1347 (1939)
.....+...+..+...|++++|...+++. +.+ ..-+.+|.+.|++++|...+.+-. .+.++..-+..
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 00001123456677788888887666542 111 223556777888888877666542 12222222333
Q ss_pred CCCCcchhhHHHHHHHHHhHh
Q 035724 1348 GWPLKQFTKKKELLEKAKSLA 1368 (1939)
Q Consensus 1348 ~~~~~~~~~ae~ll~~A~~~~ 1368 (1939)
-...+++.+|++++.+|....
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~ 335 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVF 335 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC
T ss_pred HHHcCCHHHHHHHHHHHHhcC
Confidence 334567889999988887643
No 39
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.28 E-value=9.9e-05 Score=86.12 Aligned_cols=205 Identities=13% Similarity=0.027 Sum_probs=121.5
Q ss_pred HHHHHHhCCHHHHHHHHHHhc-----ChHHHHHHHHHHHHcCCHHHHHHHHHHccC--------HHHHHHHHHhcCChHH
Q 035724 1141 AKCFYNLGEYERAGRIYLERR-----EEPELEKAGECFFLAGCYKLAADVYAKGKF--------FSECLAVCSKGKLFEI 1207 (1939)
Q Consensus 1141 aecy~kag~~~~A~eLY~e~~-----~e~~~~qaAe~fE~~G~y~eAAelY~kagd--------~dkAI~my~k~k~fd~ 1207 (1939)
+.++...|++++|.+.+.+.. ....+...|.++...|++++|.++|.++-. +-....++...+++++
T Consensus 127 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 206 (359)
T 3ieg_A 127 ALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHEL 206 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 355566666666666665541 223477889999999999999999998732 3344557788899999
Q ss_pred HHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHHhhcCHH
Q 035724 1208 GLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRSVDLMRKFLKSLSCFD 1287 (1939)
Q Consensus 1208 airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s~eeA~~~L~k~~~ld 1287 (1939)
|+...++..+..+.. ............ ....+. .+..|.+.|++++|++.+...-......... ....+.
T Consensus 207 A~~~~~~a~~~~~~~-------~~~~~~~~~~~~-~~~~~~-~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~ 276 (359)
T 3ieg_A 207 SLSEVRECLKLDQDH-------KRCFAHYKQVKK-LNKLIE-SAEELIRDGRYTDATSKYESVMKTEPSVAEY-TVRSKE 276 (359)
T ss_dssp HHHHHHHHHHHCTTC-------HHHHHHHHHHHH-HHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHCCSSHHH-HHHHHH
T ss_pred HHHHHHHHHhhCccc-------hHHHHHHHHHHH-HHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCchHH-HHHHHH
Confidence 999888544432211 000000000000 011122 2677899999999998776432211000000 001122
Q ss_pred HHHHHHHhcCCHHHHHHHHHHc-----CC---HHHHHHHHHHhCCHHHHHHHHHHHhhhhccccCCCCCCCCcchhhHHH
Q 035724 1288 DLLVLEEESGNFMDAANIARLR-----GD---IFLAVDLLQKAGCFKEACNVTLNHVISNSLWSPGSKGWPLKQFTKKKE 1359 (1939)
Q Consensus 1288 ea~ell~e~G~feEAa~Lak~~-----Gk---~~eAi~my~kAG~~~eA~rva~~~~~~~~l~~~~~~~~~~~~~~~ae~ 1359 (1939)
..+..+...|++++|...+++. +. ...-+.+|.+.|++++|...+.+-.-. .+. ...+..
T Consensus 277 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-----------~p~-~~~~~~ 344 (359)
T 3ieg_A 277 RICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH-----------NEN-DQQIRE 344 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----------CTT-CHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----------CCC-ChHHHH
Confidence 3456778889999998766643 22 233577888999999998887754321 122 355666
Q ss_pred HHHHHHhH
Q 035724 1360 LLEKAKSL 1367 (1939)
Q Consensus 1360 ll~~A~~~ 1367 (1939)
.+.+++..
T Consensus 345 ~l~~~~~~ 352 (359)
T 3ieg_A 345 GLEKAQRL 352 (359)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666654
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.27 E-value=2.8e-05 Score=86.61 Aligned_cols=189 Identities=14% Similarity=0.086 Sum_probs=125.1
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHH
Q 035724 1064 SPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKC 1143 (1939)
Q Consensus 1064 tpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaec 1143 (1939)
..+.|..+|..++..++|++|+.+|.++-... . ....+...+..|...|++++|+++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-------------------~----~~~~~~~~~~~~~~~~~~~~A~~~ 60 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-------------------K----DITYLNNRAAAEYEKGEYETAIST 60 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------------------C----CTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-------------------c----cHHHHHHHHHHHHHcccHHHHHHH
Confidence 35689999999999999999999999873210 0 123567888999999999999888
Q ss_pred HHHhCCHHHHHHHHHHhc-C----hHHHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHHHHHhcCChHHHHHHHHhhhhc
Q 035724 1144 FYNLGEYERAGRIYLERR-E----EPELEKAGECFFLAGCYKLAADVYAKGKFFSECLAVCSKGKLFEIGLQYMNHWKQH 1218 (1939)
Q Consensus 1144 y~kag~~~~A~eLY~e~~-~----e~~~~qaAe~fE~~G~y~eAAelY~kagd~dkAI~my~k~k~fd~airLv~q~~d~ 1218 (1939)
|.++- ++..... . ...+...|.++...|++++|.++|.++-....-..++.+.+++++|+...++..+.
T Consensus 61 ~~~a~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 134 (258)
T 3uq3_A 61 LNDAV------EQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYV 134 (258)
T ss_dssp HHHHH------HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH------HhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHc
Confidence 87643 3322210 0 13366789999999999999999998866555556777888888888887743321
Q ss_pred ccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHHhhcCHHHHHHHHHhcCC
Q 035724 1219 ADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRSVDLMRKFLKSLSCFDDLLVLEEESGN 1298 (1939)
Q Consensus 1219 l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s~eeA~~~L~k~~~ldea~ell~e~G~ 1298 (1939)
.+ .........+..|...|++++|++++...-.... .....+-..+..+...|+
T Consensus 135 ~~---------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~l~~~~~~~~~ 188 (258)
T 3uq3_A 135 NP---------------------EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-----EDARGYSNRAAALAKLMS 188 (258)
T ss_dssp CH---------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTC
T ss_pred Cc---------------------chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-----ccHHHHHHHHHHHHHhCC
Confidence 11 0112223347778899999999987764322110 000112233455666777
Q ss_pred HHHHHHHHH
Q 035724 1299 FMDAANIAR 1307 (1939)
Q Consensus 1299 feEAa~Lak 1307 (1939)
+++|...++
T Consensus 189 ~~~A~~~~~ 197 (258)
T 3uq3_A 189 FPEAIADCN 197 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777765544
No 41
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.16 E-value=0.00013 Score=89.08 Aligned_cols=254 Identities=11% Similarity=0.031 Sum_probs=145.5
Q ss_pred cCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHc-------
Q 035724 1062 ASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAI------- 1134 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~------- 1134 (1939)
..++.-|..+|..++..+++++|+.+|.++-...... ..++...... ....+.+.+|.+.|.++
T Consensus 57 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~~~~ 127 (450)
T 2y4t_A 57 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF-TAARLQRGHL--------LLKQGKLDEAEDDFKKVLKSNPSE 127 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH--------HHHTTCHHHHHHHHHHHHTSCCCH
T ss_pred CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHH--------HHHcCCHHHHHHHHHHHHhcCCCC
Confidence 3457788888888888888888888888764311100 0011000000 00111222222222221
Q ss_pred -----------------CCHHHHHHHHHHhCCHHHHHHHHHHhc-----ChHHHHHHHHHHHHcCCHHHHHHHHHHccC-
Q 035724 1135 -----------------GKADSAAKCFYNLGEYERAGRIYLERR-----EEPELEKAGECFFLAGCYKLAADVYAKGKF- 1191 (1939)
Q Consensus 1135 -----------------G~~~kAaecy~kag~~~~A~eLY~e~~-----~e~~~~qaAe~fE~~G~y~eAAelY~kagd- 1191 (1939)
+.+ ..+.+|...|++++|.+.|.+.. ....+...|.++...|++++|.++|.++-.
T Consensus 128 ~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 206 (450)
T 2y4t_A 128 NEEKEAQSQLIKSDEMQRLR-SQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL 206 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 111 12445667777777777776541 123467789999999999999999998732
Q ss_pred -------HHHHHHHHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHH
Q 035724 1192 -------FSECLAVCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMM 1264 (1939)
Q Consensus 1192 -------~dkAI~my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~ 1264 (1939)
+-....+|.+.+++++|+...++..+..+.. ............ ..... ..+..|.+.|++++|+
T Consensus 207 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~~~~~~~-~~~~~-~~~~~~~~~g~~~~A~ 277 (450)
T 2y4t_A 207 KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH-------KRCFAHYKQVKK-LNKLI-ESAEELIRDGRYTDAT 277 (450)
T ss_dssp HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHH-HHHHH-HHHHHHHHHTCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh-------HHHHHHHHHHHH-HHHHH-HHHHHHHHcCCHHHHH
Confidence 3345567888999999999988544322211 000000000000 01112 2267788999999999
Q ss_pred HHHHHhccHHHH-HHHHHhhcCHHHHHHHHHhcCCHHHHHHHHHHc-----CC---HHHHHHHHHHhCCHHHHHHHHHHH
Q 035724 1265 KFVKSFRSVDLM-RKFLKSLSCFDDLLVLEEESGNFMDAANIARLR-----GD---IFLAVDLLQKAGCFKEACNVTLNH 1335 (1939)
Q Consensus 1265 ~~~~~~~s~eeA-~~~L~k~~~ldea~ell~e~G~feEAa~Lak~~-----Gk---~~eAi~my~kAG~~~eA~rva~~~ 1335 (1939)
+.+...-..... ..+ ....+...+.++...|++++|...++.. +. +..-+.+|.+.|++++|...+.+.
T Consensus 278 ~~~~~~l~~~p~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 355 (450)
T 2y4t_A 278 SKYESVMKTEPSIAEY--TVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETA 355 (450)
T ss_dssp HHHHHHHHHCCSSHHH--HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcchHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 877643211100 000 0012344567788899999998777653 12 233467788899999998888755
Q ss_pred h
Q 035724 1336 V 1336 (1939)
Q Consensus 1336 ~ 1336 (1939)
+
T Consensus 356 l 356 (450)
T 2y4t_A 356 Q 356 (450)
T ss_dssp H
T ss_pred H
Confidence 4
No 42
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.14 E-value=8.2e-05 Score=92.47 Aligned_cols=283 Identities=12% Similarity=0.060 Sum_probs=144.9
Q ss_pred hhhcCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchH-----HHHHHhh---hHHhhhhhh-cC---------CchHh
Q 035724 1059 MQVASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWE-----GRSKATG---LKATADRCR-SS---------NPKQA 1120 (1939)
Q Consensus 1059 l~v~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~-----~l~kA~~---l~e~a~~~~-s~---------~~~ea 1120 (1939)
+.....+..|...+..+...++|++|++.+..+...... .+..++. ..+...... .. +.-..
T Consensus 55 fika~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~ 134 (449)
T 1b89_A 55 YIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYD 134 (449)
T ss_dssp ------------------------------------------------------CHHHHTTTTTCC--------------
T ss_pred HHcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 333566778888999999999999999988888653211 1111221 111111111 11 11113
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc----cCHHHHH
Q 035724 1121 NVNLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKG----KFFSECL 1196 (1939)
Q Consensus 1121 ~~~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~ka----gd~dkAI 1196 (1939)
.+.|.+|..+|.++..+.+=+.|+.++|+|+.|++.|.++.....|+++...+...|+|+.|..++.+. .+...++
T Consensus 135 ~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv 214 (449)
T 1b89_A 135 EKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELI 214 (449)
T ss_dssp --CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHH
Confidence 456889999999999999999999999999999999999765566899999999999999998877653 4456788
Q ss_pred HHHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccH---
Q 035724 1197 AVCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRSV--- 1273 (1939)
Q Consensus 1197 ~my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s~--- 1273 (1939)
++|.+.|.|++|+.++++-- ..+ ..|.++.+....++ .+- .++.+|+.++.+.+.
T Consensus 215 ~~Yek~G~~eEai~lLe~aL---~le----~ah~~~ftel~il~--------------~ky-~p~k~~ehl~~~~~~ini 272 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAAL---GLE----RAHMGMFTELAILY--------------SKF-KPQKMREHLELFWSRVNI 272 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHT---TST----TCCHHHHHHHHHHH--------------HTT-CHHHHHHHHHHHSTTSCH
T ss_pred HHHHHCCCHHHHHHHHHHHh---CCc----HHHHHHHHHHHHHH--------------Hhc-CHHHHHHHHHHHHHHhcC
Confidence 89999999999999998532 222 24555655443322 222 133344443332221
Q ss_pred HHHHHHHHhhcCHHHHHHHHHhcCCHHHHHHHHHHcC----CHHHHHHHHHHhCCHHHHHHHHHHHh------hhhcccc
Q 035724 1274 DLMRKFLKSLSCFDDLLVLEEESGNFMDAANIARLRG----DIFLAVDLLQKAGCFKEACNVTLNHV------ISNSLWS 1343 (1939)
Q Consensus 1274 eeA~~~L~k~~~ldea~ell~e~G~feEAa~Lak~~G----k~~eAi~my~kAG~~~eA~rva~~~~------~~~~l~~ 1343 (1939)
....+.+.....+.+++-++.+.+.|+.|...+..|- +...--+...+-.+.+-..+....|+ +.+.|-
T Consensus 273 ~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~~l~~ll~- 351 (449)
T 1b89_A 273 PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLM- 351 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHH-
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHHHHHHHHH-
Confidence 1133334455666677777778888888877666661 22333344444444444444444442 222221
Q ss_pred CCCCCCCCcchhhHHHHHHHHHhH
Q 035724 1344 PGSKGWPLKQFTKKKELLEKAKSL 1367 (1939)
Q Consensus 1344 ~~~~~~~~~~~~~ae~ll~~A~~~ 1367 (1939)
...|.-|+.+...++.++..+
T Consensus 352 ---~l~~~ld~~r~v~~~~~~~~l 372 (449)
T 1b89_A 352 ---VLSPRLDHTRAVNYFSKVKQL 372 (449)
T ss_dssp ---HHGGGCCHHHHHHHHHHTTCT
T ss_pred ---HHHhccCcHHHHHHHHHcCCc
Confidence 124566788888888777663
No 43
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.08 E-value=0.00015 Score=84.89 Aligned_cols=166 Identities=17% Similarity=0.121 Sum_probs=103.3
Q ss_pred HHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHHHHhCCH
Q 035724 1071 RGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCFYNLGEY 1150 (1939)
Q Consensus 1071 lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy~kag~~ 1150 (1939)
.|..+...++|++|+.+|.+|.... .. ..++......|..++.+|.+.|++++|+.+|.+
T Consensus 43 a~~~~~~~g~~~~A~~~~~~al~~~-----~~-----------~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~---- 102 (292)
T 1qqe_A 43 AATIYRLRKELNLAGDSFLKAADYQ-----KK-----------AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLEN---- 102 (292)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHH-----HH-----------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH----
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHH-----HH-----------hCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH----
Confidence 3445555677777777777663311 00 012333345677888888888888888877654
Q ss_pred HHHHHHHHHhcC----hHHHHHHHHHHHHc-CCHHHHHHHHHHccCH--------------HHHHHHHHhcCChHHHHHH
Q 035724 1151 ERAGRIYLERRE----EPELEKAGECFFLA-GCYKLAADVYAKGKFF--------------SECLAVCSKGKLFEIGLQY 1211 (1939)
Q Consensus 1151 ~~A~eLY~e~~~----e~~~~qaAe~fE~~-G~y~eAAelY~kagd~--------------dkAI~my~k~k~fd~airL 1211 (1939)
|.+++.+... ...+...|..+... |++++|.++|.++-+. .....++.+.++|++|+..
T Consensus 103 --Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 180 (292)
T 1qqe_A 103 --AIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (292)
T ss_dssp --HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --HHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3444433111 12366789999996 9999999999887432 2335577889999999999
Q ss_pred HHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcc
Q 035724 1212 MNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRS 1272 (1939)
Q Consensus 1212 v~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s 1272 (1939)
.++-.+..+.. ....-.....+...+..|...|+.++|++++...-.
T Consensus 181 ~~~al~~~~~~--------------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 181 YSKLIKSSMGN--------------RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHTTSSC--------------TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHhcC--------------CcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88544422211 000000112333447789999999999988875443
No 44
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.07 E-value=0.00066 Score=81.80 Aligned_cols=144 Identities=16% Similarity=0.116 Sum_probs=89.1
Q ss_pred HHHHHHHHhhCHHHHHHHHHHhCCcc-----hHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCH--H----
Q 035724 1070 SRGIKLFHEHNYDMATICFEKAKDSY-----WEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKA--D---- 1138 (1939)
Q Consensus 1070 ~lG~~l~~q~~yd~A~kcF~rAgd~~-----~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~--~---- 1138 (1939)
..|..++..++|++|+.+|.+|-... ....+.++......- ....+...+...+.+|.+++.+.+.+ .
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 186 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESY-YYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQC 186 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHhCccchHHHHHH
Confidence 38999999999999999999985421 111222222111110 11234555666777777777776641 1
Q ss_pred --HHHHHHHHhCCHHHHHHHHHHhcC------h-----HHHHHHHHHHHHcCCHHHHHHHHHHccC--------------
Q 035724 1139 --SAAKCFYNLGEYERAGRIYLERRE------E-----PELEKAGECFFLAGCYKLAADVYAKGKF-------------- 1191 (1939)
Q Consensus 1139 --kAaecy~kag~~~~A~eLY~e~~~------e-----~~~~qaAe~fE~~G~y~eAAelY~kagd-------------- 1191 (1939)
.-+.+|...|++++|.+.|.++.. . ..+...|.++...|+|++|.++|.++-+
T Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 266 (383)
T 3ulq_A 187 HSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQA 266 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence 124566677777777777765421 1 1356678888888888888888877622
Q ss_pred HHHHHHHHHhcCChHHHHHHHHh
Q 035724 1192 FSECLAVCSKGKLFEIGLQYMNH 1214 (1939)
Q Consensus 1192 ~dkAI~my~k~k~fd~airLv~q 1214 (1939)
+-....+|.+.|++++|+.+.++
T Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~ 289 (383)
T 3ulq_A 267 YFLITQIHYKLGKIDKAHEYHSK 289 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH
Confidence 22334456667777777777663
No 45
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.04 E-value=0.0002 Score=82.71 Aligned_cols=243 Identities=9% Similarity=-0.018 Sum_probs=128.6
Q ss_pred cCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcch------HHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHc-
Q 035724 1062 ASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYW------EGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAI- 1134 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~------~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~- 1134 (1939)
..++..+..+|..++..++|++|+++|.++-.... ......+. .. .+..++...+.++.+..-..
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~--~~------~~~~~A~~~~~~~~~~~~~~~ 90 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLV--EL------NKANELFYLSHKLVDLYPSNP 90 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHH--HH------TCHHHHHHHHHHHHHHCTTST
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHH--Hh------hhHHHHHHHHHHHHHhCcCCH
Confidence 44556678889999999999999999998632110 00111110 00 01111111111111110000
Q ss_pred CCHHHHHHHHHHhC-CHHHHHHHHHHhc-----ChHHHHHHHHHHHHcCCHHHHHHHHHHccC--------HHHHHHHHH
Q 035724 1135 GKADSAAKCFYNLG-EYERAGRIYLERR-----EEPELEKAGECFFLAGCYKLAADVYAKGKF--------FSECLAVCS 1200 (1939)
Q Consensus 1135 G~~~kAaecy~kag-~~~~A~eLY~e~~-----~e~~~~qaAe~fE~~G~y~eAAelY~kagd--------~dkAI~my~ 1200 (1939)
.-+-.-+.+|...| ++++|.+.+.+.. ....+...|.++...|++++|.++|.++-. +-....+|.
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 170 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYG 170 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 00111223344444 4444454444431 123477889999999999999999988733 223445778
Q ss_pred hcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHH--
Q 035724 1201 KGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRSVDLMRK-- 1278 (1939)
Q Consensus 1201 k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s~eeA~~-- 1278 (1939)
..+++++|+...++..+..+.. ...+...+..|...|++++|++.+...-.......
T Consensus 171 ~~~~~~~A~~~~~~al~~~~~~---------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 229 (330)
T 3hym_B 171 LTNNSKLAERFFSQALSIAPED---------------------PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNE 229 (330)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTC---------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCS
T ss_pred HHhhHHHHHHHHHHHHHhCCCC---------------------hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccc
Confidence 8899999998888544322211 11122336778889999988887654322110000
Q ss_pred --HHHhhcCHHHHHHHHHhcCCHHHHHHHHHHc-----C---CHHHHHHHHHHhCCHHHHHHHHH
Q 035724 1279 --FLKSLSCFDDLLVLEEESGNFMDAANIARLR-----G---DIFLAVDLLQKAGCFKEACNVTL 1333 (1939)
Q Consensus 1279 --~L~k~~~ldea~ell~e~G~feEAa~Lak~~-----G---k~~eAi~my~kAG~~~eA~rva~ 1333 (1939)
.-.....+-..+..+...|++++|...+++. + -...-+.+|.+.|++++|...+.
T Consensus 230 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 294 (330)
T 3hym_B 230 VTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFH 294 (330)
T ss_dssp CTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 0000012234456677778888887665542 1 12233566666777777766655
No 46
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.02 E-value=0.00031 Score=84.63 Aligned_cols=148 Identities=14% Similarity=0.117 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHhCCcc-----hHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHH--
Q 035724 1066 EEWKSRGIKLFHEHNYDMATICFEKAKDSY-----WEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKAD-- 1138 (1939)
Q Consensus 1066 eeW~~lG~~l~~q~~yd~A~kcF~rAgd~~-----~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~-- 1138 (1939)
.-|..+|..++..++|+.|+.+|.++-... ......++...... .....+..++...|.+|.+++.+.+...
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 165 (411)
T 4a1s_A 87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT-LKVMGRFDEAAICCERHLTLARQLGDRLSE 165 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHhhchHHH
Confidence 468899999999999999999999874321 01111111111000 0111233344444555555554444321
Q ss_pred -----HHHHHHHHhCC-----------------HHHHHHHHHHhcC------h-----HHHHHHHHHHHHcCCHHHHHHH
Q 035724 1139 -----SAAKCFYNLGE-----------------YERAGRIYLERRE------E-----PELEKAGECFFLAGCYKLAADV 1185 (1939)
Q Consensus 1139 -----kAaecy~kag~-----------------~~~A~eLY~e~~~------e-----~~~~qaAe~fE~~G~y~eAAel 1185 (1939)
.-+.+|...|+ +++|.+.|.+... . ..+...|.++...|+|++|.++
T Consensus 166 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 245 (411)
T 4a1s_A 166 GRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEH 245 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 12344444555 5555555544311 0 1245557777777777777777
Q ss_pred HHHccC--------------HHHHHHHHHhcCChHHHHHHHHh
Q 035724 1186 YAKGKF--------------FSECLAVCSKGKLFEIGLQYMNH 1214 (1939)
Q Consensus 1186 Y~kagd--------------~dkAI~my~k~k~fd~airLv~q 1214 (1939)
|.++-. +.....+|...+++++|+.+.++
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 246 HQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 766522 12223355566666666666653
No 47
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.01 E-value=0.00052 Score=81.76 Aligned_cols=187 Identities=17% Similarity=0.131 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHhCCcch-----HHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHH--
Q 035724 1066 EEWKSRGIKLFHEHNYDMATICFEKAKDSYW-----EGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKAD-- 1138 (1939)
Q Consensus 1066 eeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~-----~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~-- 1138 (1939)
.-|..+|..++..++|+.|+.+|.++-.... .....++...... .....+...+...+.+|.+++.+.+...
T Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 126 (406)
T 3sf4_A 48 AIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT-LKVLGNFDEAIVCCQRHLDISRELNDKVGE 126 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHhcccccch
Confidence 4678889999999999999999888633110 0111111111000 0111233344444555555554443321
Q ss_pred -----HHHHHHHHhCC--------------------HHHHHHHHHHhcC-------h----HHHHHHHHHHHHcCCHHHH
Q 035724 1139 -----SAAKCFYNLGE--------------------YERAGRIYLERRE-------E----PELEKAGECFFLAGCYKLA 1182 (1939)
Q Consensus 1139 -----kAaecy~kag~--------------------~~~A~eLY~e~~~-------e----~~~~qaAe~fE~~G~y~eA 1182 (1939)
.-+.+|...|+ +++|.+.|.+... . ..+...|.++...|+|++|
T Consensus 127 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 206 (406)
T 3sf4_A 127 ARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 206 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHH
T ss_pred HHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHH
Confidence 12344444455 5555555544311 1 1255667777777888777
Q ss_pred HHHHHHccC--------------HHHHHHHHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHH
Q 035724 1183 ADVYAKGKF--------------FSECLAVCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLE 1248 (1939)
Q Consensus 1183 AelY~kagd--------------~dkAI~my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le 1248 (1939)
.++|.++-. +.....+|...+++++|+.+.++-.+..+ .... .......+.
T Consensus 207 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--------------~~~~-~~~~~~~~~ 271 (406)
T 3sf4_A 207 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR--------------QLKD-RAVEAQSCY 271 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------------HTTC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH--------------hCcC-chHHHHHHH
Confidence 777766522 22223355667777777777663222111 0000 000111222
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 035724 1249 KCAIHYYGLQDKKSMMKFVK 1268 (1939)
Q Consensus 1249 ~aa~hy~kagD~k~A~~~~~ 1268 (1939)
..+..|...|+++.|.+++.
T Consensus 272 ~la~~~~~~g~~~~A~~~~~ 291 (406)
T 3sf4_A 272 SLGNTYTLLQDYEKAIDYHL 291 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHH
Confidence 33666777777777776655
No 48
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.99 E-value=0.00034 Score=82.37 Aligned_cols=201 Identities=11% Similarity=0.050 Sum_probs=104.7
Q ss_pred HHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhh-cCCchHhHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHH
Q 035724 1076 FHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCR-SSNPKQANVNLREAAKIFEAIGKADSAAKCFYNLGEYERAG 1154 (1939)
Q Consensus 1076 ~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~-s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~ 1154 (1939)
+..++|++|..++++|..... .. + .. ..+...+...|.+|+.+|...|++++|+++|.++.
T Consensus 2 ~~~~~~~eA~~~~~~a~k~~~----~~--~------~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al------ 63 (307)
T 2ifu_A 2 IAAQKISEAHEHIAKAEKYLK----TS--F------MKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEA------ 63 (307)
T ss_dssp -CHHHHHHHHHHHHHHHHHHC----CC--S------SSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------
T ss_pred CccchHHHHHHHHHHHHHHcc----cc--c------cCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------
Confidence 346788999998888753111 00 0 11 23455566678888888888888888877766443
Q ss_pred HHHHHhcC----hHHHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHHHHHhcCChHHHHHHHHhhhhcccccccccccch
Q 035724 1155 RIYLERRE----EPELEKAGECFFLAGCYKLAADVYAKGKFFSECLAVCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDV 1230 (1939)
Q Consensus 1155 eLY~e~~~----e~~~~qaAe~fE~~G~y~eAAelY~kagd~dkAI~my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~ 1230 (1939)
+++.+.-. ...+..+|.+|...|+|++|.++|.+ |++++.+.+++..+...
T Consensus 64 ~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~------Al~l~~~~g~~~~~a~~------------------- 118 (307)
T 2ifu_A 64 EAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEK------ASVMYVENGTPDTAAMA------------------- 118 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHH------HHHHHHTTTCHHHHHHH-------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH------HHHHHHHcCCHHHHHHH-------------------
Confidence 33322111 01245566777777777777666553 34444444433211111
Q ss_pred hhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHH-HHHHhhcCHHHHHHHHHhcCCHHHHHHHHHHc
Q 035724 1231 GLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRSVDLMR-KFLKSLSCFDDLLVLEEESGNFMDAANIARLR 1309 (1939)
Q Consensus 1231 ~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s~eeA~-~~L~k~~~ldea~ell~e~G~feEAa~Lak~~ 1309 (1939)
+...+..|.. |+++.|++++...-...... ........+..+..++...|++++|...+++.
T Consensus 119 ----------------~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 181 (307)
T 2ifu_A 119 ----------------LDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKE 181 (307)
T ss_dssp ----------------HHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1122445555 77777776665221111000 00000112233456666777777776554432
Q ss_pred -------CCH-------HHHHHHHHHhCCHHHHHHHHHHHh
Q 035724 1310 -------GDI-------FLAVDLLQKAGCFKEACNVTLNHV 1336 (1939)
Q Consensus 1310 -------Gk~-------~eAi~my~kAG~~~eA~rva~~~~ 1336 (1939)
+.. ...+..|...|++++|...+.+.+
T Consensus 182 l~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 182 KSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 221 122345566688888887777655
No 49
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.98 E-value=0.00031 Score=86.73 Aligned_cols=210 Identities=9% Similarity=-0.053 Sum_probs=131.5
Q ss_pred HHHHHHhCCHHHHHHHHHHhc----ChHHHHHHHHHHHHcCCHHHHHHHHHHccC--------HHHHHHHHHhcCChHHH
Q 035724 1141 AKCFYNLGEYERAGRIYLERR----EEPELEKAGECFFLAGCYKLAADVYAKGKF--------FSECLAVCSKGKLFEIG 1208 (1939)
Q Consensus 1141 aecy~kag~~~~A~eLY~e~~----~e~~~~qaAe~fE~~G~y~eAAelY~kagd--------~dkAI~my~k~k~fd~a 1208 (1939)
+.+|...|++++|.+.+.+.. ....+...|.++...|++.+|.+.|.++-. +.....+|.+.+++++|
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 566777888888888887651 123466779999999999999999988632 33445578888999999
Q ss_pred HHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHHhhcCHHH
Q 035724 1209 LQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRSVDLMRKFLKSLSCFDD 1288 (1939)
Q Consensus 1209 irLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s~eeA~~~L~k~~~lde 1288 (1939)
+...++..+..+.. ...+...+..|...|+++.|++.+...-.... .....+-.
T Consensus 324 ~~~~~~~~~~~~~~---------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~ 377 (514)
T 2gw1_A 324 GKDFDKAKELDPEN---------------------IFPYIQLACLAYRENKFDDCETLFSEAKRKFP-----EAPEVPNF 377 (514)
T ss_dssp HHHHHHHHHTCSSC---------------------SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-----TCSHHHHH
T ss_pred HHHHHHHHHhChhh---------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-----cCHHHHHH
Confidence 99888544322211 01112236678888998888887764322110 00112233
Q ss_pred HHHHHHhcCCHHHHHHHHHHc-------C-------CHHHHHHHHHH---hCCHHHHHHHHHHHh-----hhhccccCCC
Q 035724 1289 LLVLEEESGNFMDAANIARLR-------G-------DIFLAVDLLQK---AGCFKEACNVTLNHV-----ISNSLWSPGS 1346 (1939)
Q Consensus 1289 a~ell~e~G~feEAa~Lak~~-------G-------k~~eAi~my~k---AG~~~eA~rva~~~~-----~~~~l~~~~~ 1346 (1939)
.+..+...|++++|...+++. . -+..-+.+|.+ .|++++|...+.+-. ...++..-+.
T Consensus 378 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 457 (514)
T 2gw1_A 378 FAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQ 457 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 456666667777776555432 1 23344666777 788888877666542 2222333333
Q ss_pred CCCCCcchhhHHHHHHHHHhHhhhhhHHHH
Q 035724 1347 KGWPLKQFTKKKELLEKAKSLAKNESNQFY 1376 (1939)
Q Consensus 1347 ~~~~~~~~~~ae~ll~~A~~~~~~~s~~~~ 1376 (1939)
.....+++.+|.+.+.+|..+...-+....
T Consensus 458 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 487 (514)
T 2gw1_A 458 MKLQQEDIDEAITLFEESADLARTMEEKLQ 487 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhccccHHHHH
Confidence 344556789999999999987665554443
No 50
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.98 E-value=0.00067 Score=81.83 Aligned_cols=150 Identities=13% Similarity=0.083 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHhCCcc-----hHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHH---
Q 035724 1067 EWKSRGIKLFHEHNYDMATICFEKAKDSY-----WEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKAD--- 1138 (1939)
Q Consensus 1067 eW~~lG~~l~~q~~yd~A~kcF~rAgd~~-----~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~--- 1138 (1939)
-|...|..++..++|++|+.+|.+|-... ....+.++...... -....+...+...+.+|.+++.+.+.+.
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~-y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEA-YYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 36778999999999999999999985421 11222222211111 0112345566777788888887766532
Q ss_pred -----HHHHHHHHhCCHHHHHHHHHHhcC------h-----HHHHHHHHHHHHcCCHHHHHHHHHHccC-----------
Q 035724 1139 -----SAAKCFYNLGEYERAGRIYLERRE------E-----PELEKAGECFFLAGCYKLAADVYAKGKF----------- 1191 (1939)
Q Consensus 1139 -----kAaecy~kag~~~~A~eLY~e~~~------e-----~~~~qaAe~fE~~G~y~eAAelY~kagd----------- 1191 (1939)
.-+.+|...|++++|.+.|.++.. . ..+...|.++...|++++|.++|.++-+
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 261 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP 261 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHH
Confidence 235667777888888887766521 1 1255679999999999999999988743
Q ss_pred --HHHHHHHHHhcCChHHHHHHHHhhhh
Q 035724 1192 --FSECLAVCSKGKLFEIGLQYMNHWKQ 1217 (1939)
Q Consensus 1192 --~dkAI~my~k~k~fd~airLv~q~~d 1217 (1939)
+-....+|.+.|++++|+.+.++-.+
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 12233466788899999888875333
No 51
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.95 E-value=0.0019 Score=77.71 Aligned_cols=219 Identities=10% Similarity=0.016 Sum_probs=120.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcC----hHHHHHHHHHHHHcCCHHHHHHHHHHccCH---------H
Q 035724 1127 AAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERRE----EPELEKAGECFFLAGCYKLAADVYAKGKFF---------S 1193 (1939)
Q Consensus 1127 AA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~----e~~~~qaAe~fE~~G~y~eAAelY~kagd~---------d 1193 (1939)
.|.+|...|++++|+++|.++-.. +.+..+ ...+...|.++...|++.+|.+.|.++-+. .
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 182 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESK------LIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR 182 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT------GGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH------HhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH
Confidence 566666777777777776665322 111000 012556789999999999999988887432 1
Q ss_pred ------HHHHHHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 035724 1194 ------ECLAVCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFV 1267 (1939)
Q Consensus 1194 ------kAI~my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~ 1267 (1939)
....+|...|+|++|+...++--+..+ ...... .....+...+..|...|+++.|++++
T Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--------------~~~~~~-~~~~~~~~lg~~y~~~g~~~~A~~~~ 247 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAE--------------AEKQPQ-LMGRTLYNIGLCKNSQSQYEDAIPYF 247 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------------HTTCHH-HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH--------------HcCChH-HHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 112467778999999888774222111 100000 11122334488899999999999877
Q ss_pred HHhccHHHHHHHHHhhcC-------HHHHHHHHHhcCCHHHHHHHHHHc-------CCHH------HHHHHHHHhCC---
Q 035724 1268 KSFRSVDLMRKFLKSLSC-------FDDLLVLEEESGNFMDAANIARLR-------GDIF------LAVDLLQKAGC--- 1324 (1939)
Q Consensus 1268 ~~~~s~eeA~~~L~k~~~-------ldea~ell~e~G~feEAa~Lak~~-------Gk~~------eAi~my~kAG~--- 1324 (1939)
...- ....+.+. +-..+..+...|++++|...+++. +.+. .-..+|...|+
T Consensus 248 ~~al------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 321 (383)
T 3ulq_A 248 KRAI------AVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEA 321 (383)
T ss_dssp HHHH------HHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHH
T ss_pred HHHH------HHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHH
Confidence 6322 22222222 334456666777777775544322 2221 12233334444
Q ss_pred HHHHHHHHHHHh----hhhccccCCCCCCCCcchhhHHHHHHHHHhHhhhhh
Q 035724 1325 FKEACNVTLNHV----ISNSLWSPGSKGWPLKQFTKKKELLEKAKSLAKNES 1372 (1939)
Q Consensus 1325 ~~eA~rva~~~~----~~~~l~~~~~~~~~~~~~~~ae~ll~~A~~~~~~~s 1372 (1939)
+.+|...+.+.- ...++..-|..-...+++.+|...+.+|..+.+.+.
T Consensus 322 ~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~ 373 (383)
T 3ulq_A 322 IQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQ 373 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh
Confidence 444444433321 111222222223334578999999999999777654
No 52
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.92 E-value=8.3e-05 Score=88.42 Aligned_cols=189 Identities=8% Similarity=-0.037 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHH
Q 035724 1065 PEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCF 1144 (1939)
Q Consensus 1065 peeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy 1144 (1939)
...|..+|..++..++|+.|+.+|+++-.. +|. ....+...+..|...|++++|+++|
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---------------------~p~-~~~~~~~lg~~~~~~g~~~~A~~~~ 122 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQ---------------------DPG-DAEAWQFLGITQAENENEQAAIVAL 122 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------------CTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------------------CcC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 345999999999999999999999987320 111 1234678888999999999998887
Q ss_pred HHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccCHHH------------------HHHHHHhcCChH
Q 035724 1145 YNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKFFSE------------------CLAVCSKGKLFE 1206 (1939)
Q Consensus 1145 ~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd~dk------------------AI~my~k~k~fd 1206 (1939)
.++- ++.- .....+...|.++...|++++|.++|.++-.... ...++.+.++++
T Consensus 123 ~~al------~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 194 (365)
T 4eqf_A 123 QRCL------ELQP--NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLE 194 (365)
T ss_dssp HHHH------HHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHH
T ss_pred HHHH------hcCC--CCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHH
Confidence 6543 2210 1123467789999999999999999988733211 145677788888
Q ss_pred HHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHHhhcCH
Q 035724 1207 IGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRSVDLMRKFLKSLSCF 1286 (1939)
Q Consensus 1207 ~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s~eeA~~~L~k~~~l 1286 (1939)
+|+.+.++-.+..+.. .....+...+..|...|++++|++++...-.... .....+
T Consensus 195 ~A~~~~~~al~~~p~~-------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~ 250 (365)
T 4eqf_A 195 GVKELYLEAAHQNGDM-------------------IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP-----EDYSLW 250 (365)
T ss_dssp HHHHHHHHHHHHSCSS-------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----TCHHHH
T ss_pred HHHHHHHHHHHhCcCc-------------------cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHH
Confidence 8888887543322210 0011112236678888999888887664221110 000112
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 035724 1287 DDLLVLEEESGNFMDAANIAR 1307 (1939)
Q Consensus 1287 dea~ell~e~G~feEAa~Lak 1307 (1939)
-.....+...|++++|...++
T Consensus 251 ~~l~~~~~~~g~~~~A~~~~~ 271 (365)
T 4eqf_A 251 NRLGATLANGDRSEEAVEAYT 271 (365)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHH
Confidence 233455666666666665544
No 53
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=97.92 E-value=0.00028 Score=77.35 Aligned_cols=135 Identities=16% Similarity=0.017 Sum_probs=102.2
Q ss_pred HHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHHHHHhcCChHHHHHHHHhhhhcccc
Q 035724 1142 KCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKFFSECLAVCSKGKLFEIGLQYMNHWKQHADT 1221 (1939)
Q Consensus 1142 ecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd~dkAI~my~k~k~fd~airLv~q~~d~l~~ 1221 (1939)
++-.+.|+++.|.++..+.-.+.+|++-|+..-..|+++-|+++|.+++++++..=+|.-.|+-++..++.+.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~i------- 85 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNI------- 85 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHH-------
T ss_pred HHHHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHH-------
Confidence 3445678888888887776567789999999999999999999999999999999999888886644433330
Q ss_pred cccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHHhhcCHHHHHHHHHhcCCHHH
Q 035724 1222 DVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRSVDLMRKFLKSLSCFDDLLVLEEESGNFMD 1301 (1939)
Q Consensus 1222 ~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s~eeA~~~L~k~~~ldea~ell~e~G~feE 1301 (1939)
-...||+.. |+..+--.|+++++++++.+.|++.+
T Consensus 86 --------------------------------A~~~g~~n~-------------af~~~l~lGdv~~~i~lL~~~~r~~e 120 (177)
T 3mkq_B 86 --------------------------------AQTREDFGS-------------MLLNTFYNNSTKERSSIFAEGGSLPL 120 (177)
T ss_dssp --------------------------------HHHTTCHHH-------------HHHHHHHHTCHHHHHHHHHHTTCHHH
T ss_pred --------------------------------HHHCccHHH-------------HHHHHHHcCCHHHHHHHHHHCCChHH
Confidence 112232222 22233346888888899999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHhCCHHHH
Q 035724 1302 AANIARLRGDIFLAVDLLQKAGCFKEA 1328 (1939)
Q Consensus 1302 Aa~Lak~~Gk~~eAi~my~kAG~~~eA 1328 (1939)
|+..|+.+|-...|.++...+|--.+.
T Consensus 121 A~~~A~t~g~~~~a~~~~~~~~~~~~~ 147 (177)
T 3mkq_B 121 AYAVAKANGDEAAASAFLEQAEVDEQD 147 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHcCcHHHHHHHHHHhCCcccc
Confidence 999999999998888888777655443
No 54
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.91 E-value=4.4e-05 Score=90.31 Aligned_cols=216 Identities=12% Similarity=0.037 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 035724 1066 EEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCFY 1145 (1939)
Q Consensus 1066 eeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy~ 1145 (1939)
..|..+|..++..++|++|+.+|.++-.. +|. ....+...+..|...|++++|+++|.
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~---------------------~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 122 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQ---------------------DPK-HMEAWQYLGTTQAENEQELLAISALR 122 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHS---------------------CTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------------------CCC-CHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 46899999999999999999999986321 111 12345677888888899988888876
Q ss_pred HhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccCHHH-----------------------HHHHHHhc
Q 035724 1146 NLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKFFSE-----------------------CLAVCSKG 1202 (1939)
Q Consensus 1146 kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd~dk-----------------------AI~my~k~ 1202 (1939)
++- ++.- .....+...|.++...|++++|.++|.++-.... .+..+...
T Consensus 123 ~al------~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 123 RCL------ELKP--DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHH------HHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred HHH------hcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 543 2210 1123466779999999999999999987622100 12323367
Q ss_pred CChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHHh
Q 035724 1203 KLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRSVDLMRKFLKS 1282 (1939)
Q Consensus 1203 k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s~eeA~~~L~k 1282 (1939)
+++++|+.+.++..+..+.. . ....+...+..|...|+++.|++++...-..+. ..
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~--------------~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----~~ 250 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTS--------------I-----DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-----ND 250 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTS--------------C-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC
T ss_pred ccHHHHHHHHHHHHHhCcCc--------------c-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----CC
Confidence 77888888777533322210 0 011122336778889999999887764321110 00
Q ss_pred hcCHHHHHHHHHhcCCHHHHHHHHHHc-----CC---HHHHHHHHHHhCCHHHHHHHHHHH
Q 035724 1283 LSCFDDLLVLEEESGNFMDAANIARLR-----GD---IFLAVDLLQKAGCFKEACNVTLNH 1335 (1939)
Q Consensus 1283 ~~~ldea~ell~e~G~feEAa~Lak~~-----Gk---~~eAi~my~kAG~~~eA~rva~~~ 1335 (1939)
...+-..+..+...|++++|...+++. +. ...-+.+|.+.|++++|...+.+.
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 311 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEA 311 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 011223445666777777776655532 11 122355566666666666555544
No 55
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.90 E-value=0.00054 Score=85.43 Aligned_cols=228 Identities=9% Similarity=-0.007 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHcCC---------------HHHHHHHHHHhCCHHHHHHHHHHhc----ChHHHHHHHHHHHHcCCHHH
Q 035724 1121 NVNLREAAKIFEAIGK---------------ADSAAKCFYNLGEYERAGRIYLERR----EEPELEKAGECFFLAGCYKL 1181 (1939)
Q Consensus 1121 ~~~y~eAA~lYe~~G~---------------~~kAaecy~kag~~~~A~eLY~e~~----~e~~~~qaAe~fE~~G~y~e 1181 (1939)
.+.|.+|..+|.++-. +.....++...|++++|.+.|.+.. ....+...|.++...|++.+
T Consensus 215 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (537)
T 3fp2_A 215 NDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQE 294 (537)
T ss_dssp HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHH
T ss_pred HHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHH
Confidence 3467777777766421 1223467777888888888887651 12346777888999999999
Q ss_pred HHHHHHHccC--------HHHHHHHHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHH
Q 035724 1182 AADVYAKGKF--------FSECLAVCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIH 1253 (1939)
Q Consensus 1182 AAelY~kagd--------~dkAI~my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~h 1253 (1939)
|.++|.++-. +.....++...+++++|+...++-.+..+.. ...+..-+..
T Consensus 295 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------------~~~~~~la~~ 353 (537)
T 3fp2_A 295 FFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN---------------------VYPYIQLACL 353 (537)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------------SHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---------------------HHHHHHHHHH
Confidence 9999988622 2334457778899999998888544322211 0111223667
Q ss_pred HHhcCCHHHHHHHHHHhccHHHHHHHHHhhcCHHHHHHHHHhcCCHHHHHHHHHHc--------------CCHHHHHHHH
Q 035724 1254 YYGLQDKKSMMKFVKSFRSVDLMRKFLKSLSCFDDLLVLEEESGNFMDAANIARLR--------------GDIFLAVDLL 1319 (1939)
Q Consensus 1254 y~kagD~k~A~~~~~~~~s~eeA~~~L~k~~~ldea~ell~e~G~feEAa~Lak~~--------------Gk~~eAi~my 1319 (1939)
|...|+++.|++.+...-.... .....+...+..+...|++++|...+++. |....-+..|
T Consensus 354 ~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~ 428 (537)
T 3fp2_A 354 LYKQGKFTESEAFFNETKLKFP-----TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATIL 428 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-----TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHH
Confidence 8888999988888864322110 00111223355666667777766555432 1112224555
Q ss_pred HHh----------CCHHHHHHHHHHHh-----hhhccccCCCCCCCCcchhhHHHHHHHHHhHhhhhhHH
Q 035724 1320 QKA----------GCFKEACNVTLNHV-----ISNSLWSPGSKGWPLKQFTKKKELLEKAKSLAKNESNQ 1374 (1939)
Q Consensus 1320 ~kA----------G~~~eA~rva~~~~-----~~~~l~~~~~~~~~~~~~~~ae~ll~~A~~~~~~~s~~ 1374 (1939)
.+. |++++|...+.+.. ...++..-+..-...+++.+|.+.+.+|.++.......
T Consensus 429 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 429 ARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp HHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred HHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 555 77777776666542 12223333333344567899999999999977655444
No 56
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.88 E-value=0.00073 Score=77.34 Aligned_cols=173 Identities=14% Similarity=0.110 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHH
Q 035724 1065 PEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCF 1144 (1939)
Q Consensus 1065 peeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy 1144 (1939)
...|..+|..++..++|++|+.+|.++-. ...... ..+.......+...+..|...|++++|.++|
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~-----~~~~~~---------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 92 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALE-----DLEKTS---------GHDHPDVATMLNILALVYRDQNKYKDAANLL 92 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HHHHHH---------CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHc---------CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45789999999999999999999998732 111000 0011223345678889999999999998887
Q ss_pred HHhCCHHHHHHHHHHh--cC----hHHHHHHHHHHHHcCCHHHHHHHHHHccCHH----------------HHHHHHHhc
Q 035724 1145 YNLGEYERAGRIYLER--RE----EPELEKAGECFFLAGCYKLAADVYAKGKFFS----------------ECLAVCSKG 1202 (1939)
Q Consensus 1145 ~kag~~~~A~eLY~e~--~~----e~~~~qaAe~fE~~G~y~eAAelY~kagd~d----------------kAI~my~k~ 1202 (1939)
.++ .+++.+. .. ...+...|.++...|++++|.++|.++-+.. ....++...
T Consensus 93 ~~a------l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 166 (311)
T 3nf1_A 93 NDA------LAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQ 166 (311)
T ss_dssp HHH------HHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT
T ss_pred HHH------HHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Confidence 654 3333321 00 1235677999999999999999998874431 223466788
Q ss_pred CChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 035724 1203 KLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSF 1270 (1939)
Q Consensus 1203 k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~ 1270 (1939)
+++++|+.+.++-.+..... .+ .. .......+...+..|...|++++|.+.+...
T Consensus 167 ~~~~~A~~~~~~a~~~~~~~---~~---------~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 221 (311)
T 3nf1_A 167 GKYEEVEYYYQRALEIYQTK---LG---------PD-DPNVAKTKNNLASCYLKQGKFKQAETLYKEI 221 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHT---SC---------TT-CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH---hC---------CC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998887433211000 00 00 0111122334477789999999998877643
No 57
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.84 E-value=0.0013 Score=75.35 Aligned_cols=27 Identities=19% Similarity=0.194 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHhC
Q 035724 1066 EEWKSRGIKLFHEHNYDMATICFEKAK 1092 (1939)
Q Consensus 1066 eeW~~lG~~l~~q~~yd~A~kcF~rAg 1092 (1939)
.-|..+|..++..++++.|+.+|.++-
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al 70 (338)
T 3ro2_A 44 AIYSQLGNAYFYLHDYAKALEYHHHDL 70 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467788999999999999999998864
No 58
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.83 E-value=0.00052 Score=79.19 Aligned_cols=29 Identities=24% Similarity=0.465 Sum_probs=18.1
Q ss_pred CCHHHHHHHHHHHHHhhCHHHHHHHHHHh
Q 035724 1063 SSPEEWKSRGIKLFHEHNYDMATICFEKA 1091 (1939)
Q Consensus 1063 StpeeW~~lG~~l~~q~~yd~A~kcF~rA 1091 (1939)
..+..|..+|..+...+++++|+.+|.++
T Consensus 53 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 81 (327)
T 3cv0_A 53 EREEAWRSLGLTQAENEKDGLAIIALNHA 81 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34556666666666666666666666654
No 59
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.81 E-value=0.0021 Score=75.09 Aligned_cols=48 Identities=13% Similarity=-0.029 Sum_probs=25.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHc-------CC--------HHHHHHHHHHhCCHHHHHHHHHHH
Q 035724 1288 DLLVLEEESGNFMDAANIARLR-------GD--------IFLAVDLLQKAGCFKEACNVTLNH 1335 (1939)
Q Consensus 1288 ea~ell~e~G~feEAa~Lak~~-------Gk--------~~eAi~my~kAG~~~eA~rva~~~ 1335 (1939)
.+..++...|++++|...+++. +. +...+..|...|++++|...+.++
T Consensus 163 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 163 KCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445566666666666555432 11 122344555666666666655544
No 60
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.78 E-value=0.00074 Score=79.73 Aligned_cols=31 Identities=13% Similarity=0.192 Sum_probs=27.5
Q ss_pred cCCHHHHHHHHHHHHHhhCHHHHHHHHHHhC
Q 035724 1062 ASSPEEWKSRGIKLFHEHNYDMATICFEKAK 1092 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~yd~A~kcF~rAg 1092 (1939)
...+.-|..+|..+...+++++|+.+|.++-
T Consensus 95 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 125 (368)
T 1fch_A 95 PKHMEAWQYLGTTQAENEQELLAISALRRCL 125 (368)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4567889999999999999999999999873
No 61
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.77 E-value=0.00041 Score=77.40 Aligned_cols=29 Identities=28% Similarity=0.389 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHhC
Q 035724 1064 SPEEWKSRGIKLFHEHNYDMATICFEKAK 1092 (1939)
Q Consensus 1064 tpeeW~~lG~~l~~q~~yd~A~kcF~rAg 1092 (1939)
+++.|..+|..++..+++++|+.+|+++-
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al 32 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERAL 32 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56689999999999999999999999873
No 62
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.77 E-value=0.00081 Score=79.85 Aligned_cols=64 Identities=17% Similarity=0.271 Sum_probs=44.0
Q ss_pred cCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHH
Q 035724 1062 ASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAA 1141 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAa 1141 (1939)
..++.-|..+|..+...++|++|+.+|.++-... |. ....+...+..|...|++++|+
T Consensus 96 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------------------p~-~~~~~~~l~~~~~~~g~~~~A~ 153 (365)
T 4eqf_A 96 PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ---------------------PN-NLKALMALAVSYTNTSHQQDAC 153 (365)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------TT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---------------------CC-CHHHHHHHHHHHHccccHHHHH
Confidence 4568899999999999999999999999873211 11 1223455566666666666666
Q ss_pred HHHHHh
Q 035724 1142 KCFYNL 1147 (1939)
Q Consensus 1142 ecy~ka 1147 (1939)
++|.++
T Consensus 154 ~~~~~a 159 (365)
T 4eqf_A 154 EALKNW 159 (365)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.76 E-value=0.00055 Score=73.16 Aligned_cols=156 Identities=13% Similarity=0.131 Sum_probs=104.7
Q ss_pred cCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHH
Q 035724 1062 ASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAA 1141 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAa 1141 (1939)
+.++.-|..+|..+..+|+|++|+.+|++|=.. +|. ....+...|.+|.+.|++++|+
T Consensus 2 ge~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~---------------------~p~-~~~~~~~la~~~~~~~~~~~a~ 59 (184)
T 3vtx_A 2 GETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA---------------------DPN-NVETLLKLGKTYMDIGLPNDAI 59 (184)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------------CTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------CCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 457789999999999999999999999986210 122 2234667788888889888888
Q ss_pred HHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC--------HHHHHHHHHhcCChHHHHHHHH
Q 035724 1142 KCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF--------FSECLAVCSKGKLFEIGLQYMN 1213 (1939)
Q Consensus 1142 ecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd--------~dkAI~my~k~k~fd~airLv~ 1213 (1939)
+++.++. .. .......+...|..+...+++..|.+.|.++-. +.....+|.+.++|++|+...+
T Consensus 60 ~~~~~~~------~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 131 (184)
T 3vtx_A 60 ESLKKFV------VL--DTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYE 131 (184)
T ss_dssp HHHHHHH------HH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHH------hc--CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHH
Confidence 7776542 21 001123466778888899999999999888732 2233446778888888888877
Q ss_pred hhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 035724 1214 HWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVK 1268 (1939)
Q Consensus 1214 q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~ 1268 (1939)
+--+..+.. ...+..-+..|.+.|++++|++++.
T Consensus 132 ~~l~~~p~~---------------------~~~~~~lg~~~~~~g~~~~A~~~~~ 165 (184)
T 3vtx_A 132 KTISIKPGF---------------------IRAYQSIGLAYEGKGLRDEAVKYFK 165 (184)
T ss_dssp HHHHHCTTC---------------------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhcchh---------------------hhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 533322211 1112223667888888888887665
No 64
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.76 E-value=0.00046 Score=84.98 Aligned_cols=67 Identities=10% Similarity=0.091 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 035724 1067 EWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCFYN 1146 (1939)
Q Consensus 1067 eW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy~k 1146 (1939)
..-.+|.....+|++++|+++|++|-+ +.+... ....++. ....|...|..|...|++++|..+|.+
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~-----~~~~~~-------~~~~~~~-~~~~~~nla~~y~~~g~~~~A~~~~~k 119 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEE-----LIQQEH-------ADQAEIR-SLVTWGNYAWVYYHMGRLSDVQIYVDK 119 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-----HHHHHS-------GGGCTTT-THHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH-----HHHhcC-------ccccchH-HHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 345689999999999999999999832 111100 0001111 223456667777777777777666543
No 65
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.00068 Score=74.30 Aligned_cols=96 Identities=10% Similarity=0.037 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHHHHH
Q 035724 1121 NVNLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKFFSECLAVCS 1200 (1939)
Q Consensus 1121 ~~~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd~dkAI~my~ 1200 (1939)
...|.+.++...+.|+++.|.+||.++|++.+..=+|.-......+.+.|+..+..|++.-|..+|.-.|++++|++++.
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCccHHHHHHHHHHcCCHHHHHHHHH
Confidence 45789999999999999999999999999999999988755667789999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHhhh
Q 035724 1201 KGKLFEIGLQYMNHWK 1216 (1939)
Q Consensus 1201 k~k~fd~airLv~q~~ 1216 (1939)
+.+.+.+|+...+-|.
T Consensus 114 ~~~r~~eA~~~A~t~g 129 (177)
T 3mkq_B 114 EGGSLPLAYAVAKANG 129 (177)
T ss_dssp HTTCHHHHHHHHHHTT
T ss_pred HCCChHHHHHHHHHcC
Confidence 9999999999988544
No 66
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.69 E-value=0.00051 Score=79.34 Aligned_cols=204 Identities=10% Similarity=-0.009 Sum_probs=121.5
Q ss_pred HHHHHHHhCCHHHHHHHHHHhc-----ChHHHHHHHHHHHHcC-CHHHHHHHHHHccC--------HHHHHHHHHhcCCh
Q 035724 1140 AAKCFYNLGEYERAGRIYLERR-----EEPELEKAGECFFLAG-CYKLAADVYAKGKF--------FSECLAVCSKGKLF 1205 (1939)
Q Consensus 1140 Aaecy~kag~~~~A~eLY~e~~-----~e~~~~qaAe~fE~~G-~y~eAAelY~kagd--------~dkAI~my~k~k~f 1205 (1939)
-+.++...|++++|.+++.+.. ....+...|.++...| ++++|.++|.++-. +-....++...+++
T Consensus 62 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 141 (330)
T 3hym_B 62 HIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEH 141 (330)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCH
Confidence 4566777788888888877652 1234777889999999 89999999988632 33445577788889
Q ss_pred HHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHHhhcC
Q 035724 1206 EIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRSVDLMRKFLKSLSC 1285 (1939)
Q Consensus 1206 d~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s~eeA~~~L~k~~~ 1285 (1939)
++|+...++..+..+.. .......+..|...|+++.|++++...-..... ....
T Consensus 142 ~~A~~~~~~a~~~~~~~---------------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~ 195 (330)
T 3hym_B 142 DQAMAAYFTAAQLMKGC---------------------HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE-----DPFV 195 (330)
T ss_dssp HHHHHHHHHHHHHTTTC---------------------SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-----CHHH
T ss_pred HHHHHHHHHHHHhcccc---------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-----ChHH
Confidence 98888887543322211 000112366788889998888877643221100 0011
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHcC-----------------CHHHHHHHHHHhCCHHHHHHHHHHHh-----hhhcccc
Q 035724 1286 FDDLLVLEEESGNFMDAANIARLRG-----------------DIFLAVDLLQKAGCFKEACNVTLNHV-----ISNSLWS 1343 (1939)
Q Consensus 1286 ldea~ell~e~G~feEAa~Lak~~G-----------------k~~eAi~my~kAG~~~eA~rva~~~~-----~~~~l~~ 1343 (1939)
+-..+.++...|++++|...+++.- -...-+.+|.+.|++++|...+.+.. ...++..
T Consensus 196 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 275 (330)
T 3hym_B 196 MHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSA 275 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHH
Confidence 2234466667777777766554320 11234667777888888877776653 1222222
Q ss_pred CCCCCCCCcchhhHHHHHHHHHhHhh
Q 035724 1344 PGSKGWPLKQFTKKKELLEKAKSLAK 1369 (1939)
Q Consensus 1344 ~~~~~~~~~~~~~ae~ll~~A~~~~~ 1369 (1939)
-+......+++.+|.+.+.+|.++..
T Consensus 276 la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 276 IGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HHHHHHHhccHHHHHHHHHHHHccCC
Confidence 23333334556677777666665443
No 67
>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.25 PDB: 3k70_C*
Probab=97.69 E-value=8.7e-06 Score=112.81 Aligned_cols=69 Identities=12% Similarity=0.103 Sum_probs=50.0
Q ss_pred CceEEEEeecccCCCCCEEEEeccCCCCCccccccCCCCCCCCCChhH-------hhhhhHHHHhhhheeeeccccceEE
Q 035724 952 KQALVLTIVESKGLEFQVIHYTSQCCNSPFKHALFDSTSPGSFPSFNE-------AKHNVLCSELKQLYVAITRTRQRLW 1024 (1939)
Q Consensus 952 ~~~lVmTihesKGLEF~~Vil~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~Elk~LYVA~TRAr~~L~ 1024 (1939)
....|||+|+|||||||+|+|.++..+.... .... ..++. .....+.+|++++||||||||++|+
T Consensus 657 ~~V~l~Tlh~aKgLef~vVfllGlnEG~fP~-------~~~~-~~~dll~~~l~~~dr~~~eEERrLfYvAltrA~~~L~ 728 (1122)
T 1w36_C 657 GPVNICTLMPMRSIPFKVVCLLGMNDGVYPR-------QLAP-LGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLY 728 (1122)
T ss_dssp SSCEEECCCTTCCCCEEEEEEECCBTTTSSC-------CCCC-CSSCHHHHSCCTTCCCHHHHHHHHHHHHHHHEEEEEE
T ss_pred CeEEEeccccccCCCcCEEEEeCCCcccCCC-------CCCC-CcHHHhhcccCCCchhhhHHHHHHHHHHHHhhcCeEE
Confidence 4678999999999999999999998872221 1100 01110 1123478999999999999999999
Q ss_pred Eecc
Q 035724 1025 IWEN 1028 (1939)
Q Consensus 1025 I~d~ 1028 (1939)
|.-.
T Consensus 729 LSy~ 732 (1122)
T 1w36_C 729 ISYI 732 (1122)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9753
No 68
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=97.68 E-value=0.0011 Score=74.79 Aligned_cols=215 Identities=13% Similarity=0.006 Sum_probs=130.9
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHH
Q 035724 1064 SPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKC 1143 (1939)
Q Consensus 1064 tpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaec 1143 (1939)
.+..|..+|..++..++|++|+.+|.++-.. +|. ....+...|.+|...|++++|+++
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---------------------~~~-~~~~~~~la~~~~~~~~~~~A~~~ 99 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAI---------------------RPD-MPEVFNYLGIYLTQAGNFDAAYEA 99 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CCC-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHc---------------------CCC-cHHHHHHHHHHHHHccCHHHHHHH
Confidence 3568899999999999999999999986321 111 123466788888999999999888
Q ss_pred HHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC-------HHHHHHHHHhcCChHHHHHHHHhhh
Q 035724 1144 FYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF-------FSECLAVCSKGKLFEIGLQYMNHWK 1216 (1939)
Q Consensus 1144 y~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd-------~dkAI~my~k~k~fd~airLv~q~~ 1216 (1939)
|.++ .++.- .....+...|.++...|++++|.++|.++-. ......++...+++++|+...++..
T Consensus 100 ~~~a------l~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 100 FDSV------LELDP--TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHH------HHHCT--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHH------HhcCc--cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 7654 33211 1123467789999999999999999988722 1223334556678888888876433
Q ss_pred hcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHHhhcCHHHHHHHHHhc
Q 035724 1217 QHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRSVDLMRKFLKSLSCFDDLLVLEEES 1296 (1939)
Q Consensus 1217 d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s~eeA~~~L~k~~~ldea~ell~e~ 1296 (1939)
...+.. . . .. ..+..+...++.+.|++.+...-....... ......+-.++..+...
T Consensus 172 ~~~~~~-------~-------~-------~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 228 (275)
T 1xnf_A 172 EKSDKE-------Q-------W-------GW-NIVEFYLGNISEQTLMERLKADATDNTSLA-EHLSETNFYLGKYYLSL 228 (275)
T ss_dssp HHSCCC-------S-------T-------HH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHH-HHHHHHHHHHHHHHHHT
T ss_pred hcCCcc-------h-------H-------HH-HHHHHHHHhcCHHHHHHHHHHHhccccccc-ccccHHHHHHHHHHHHc
Confidence 322211 0 0 01 114446667777777766653222221000 00012233445677778
Q ss_pred CCHHHHHHHHHHc-----CCHHHHHHHHHHhCCHHHHHHH
Q 035724 1297 GNFMDAANIARLR-----GDIFLAVDLLQKAGCFKEACNV 1331 (1939)
Q Consensus 1297 G~feEAa~Lak~~-----Gk~~eAi~my~kAG~~~eA~rv 1331 (1939)
|++++|...+++. +.+......+...|++++|...
T Consensus 229 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~l~~~~~a~~~ 268 (275)
T 1xnf_A 229 GDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDD 268 (275)
T ss_dssp TCHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhHHH
Confidence 8888887766643 3444556666667777776544
No 69
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=97.64 E-value=0.0012 Score=74.43 Aligned_cols=49 Identities=16% Similarity=0.133 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHccC---------HHHHHHHHHhcCChHHHHHHHHh
Q 035724 1165 ELEKAGECFFLAGCYKLAADVYAKGKF---------FSECLAVCSKGKLFEIGLQYMNH 1214 (1939)
Q Consensus 1165 ~~~qaAe~fE~~G~y~eAAelY~kagd---------~dkAI~my~k~k~fd~airLv~q 1214 (1939)
.+...|.++...|+|++|.++|.++-. +..+..+|.+ +++++|+...++
T Consensus 110 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~ 167 (272)
T 3u4t_A 110 MYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN-KEYVKADSSFVK 167 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 466677777777788877777777632 1122133333 367777776664
No 70
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.64 E-value=0.00055 Score=76.54 Aligned_cols=120 Identities=14% Similarity=0.111 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHH
Q 035724 1065 PEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCF 1144 (1939)
Q Consensus 1065 peeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy 1144 (1939)
+..|..+|..++..+++++|+.+|.++-.. ++. ....+...|..|...|++++|.++|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---------------------~~~-~~~~~~~la~~~~~~~~~~~A~~~~ 94 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI---------------------DPS-SADAHAALAVVFQTEMEPKLADEEY 94 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH---------------------CTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc---------------------CCC-hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 567999999999999999999999976321 011 1234567788888888888888887
Q ss_pred HHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC----H------HHHHHHHHhcCChHHHHHHHHh
Q 035724 1145 YNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF----F------SECLAVCSKGKLFEIGLQYMNH 1214 (1939)
Q Consensus 1145 ~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd----~------dkAI~my~k~k~fd~airLv~q 1214 (1939)
.++-. +.. .....+...|.++...|++++|.++|.++-. . -....++.+.+++++|+.+.++
T Consensus 95 ~~a~~------~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 166 (252)
T 2ho1_A 95 RKALA------SDS--RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEK 166 (252)
T ss_dssp HHHHH------HCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHH------HCc--CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 65432 100 1123356678888889999999998887643 1 1223355667777777777664
No 71
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.63 E-value=0.0017 Score=72.15 Aligned_cols=112 Identities=11% Similarity=0.154 Sum_probs=65.8
Q ss_pred CCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHH
Q 035724 1063 SSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAK 1142 (1939)
Q Consensus 1063 StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAae 1142 (1939)
..+.-|..+|..+...++|++|+.+|.++-.... .. ..+.......+...+..|...|++++|.+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-----~~----------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 100 (258)
T 3uq3_A 36 KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGR-----EM----------RADYKVISKSFARIGNAYHKLGDLKKTIE 100 (258)
T ss_dssp CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HT----------TCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc-----cc----------ccchHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 6788999999999999999999999998632110 00 00011113345667777777777777766
Q ss_pred HHHHh-------------CCHHHHHHHHHHhc--Ch---HHHHHHHHHHHHcCCHHHHHHHHHHc
Q 035724 1143 CFYNL-------------GEYERAGRIYLERR--EE---PELEKAGECFFLAGCYKLAADVYAKG 1189 (1939)
Q Consensus 1143 cy~ka-------------g~~~~A~eLY~e~~--~e---~~~~qaAe~fE~~G~y~eAAelY~ka 1189 (1939)
+|.++ |++++|.+.+.+.. .. ..+...|.++...|+|++|.++|.++
T Consensus 101 ~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 165 (258)
T 3uq3_A 101 YYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEM 165 (258)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 66544 33445554444321 11 11344455555555555555555554
No 72
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.63 E-value=0.0071 Score=75.68 Aligned_cols=68 Identities=12% Similarity=0.002 Sum_probs=35.2
Q ss_pred hCCHHHHHHHHHHhcC---hHHHHHHHHHHHH----cCCHHHHHHHHHHc---cCHHH---HHHHHHh----cCChHHHH
Q 035724 1147 LGEYERAGRIYLERRE---EPELEKAGECFFL----AGCYKLAADVYAKG---KFFSE---CLAVCSK----GKLFEIGL 1209 (1939)
Q Consensus 1147 ag~~~~A~eLY~e~~~---e~~~~qaAe~fE~----~G~y~eAAelY~ka---gd~dk---AI~my~k----~k~fd~ai 1209 (1939)
.+++++|.++|.+... ...+...|.++.. .+++++|.++|.++ ++..- ...+|.. .+++++|+
T Consensus 164 ~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~ 243 (490)
T 2xm6_A 164 TRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSR 243 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 4456666666654321 1224455666666 66777777777665 22211 1123333 45666666
Q ss_pred HHHHh
Q 035724 1210 QYMNH 1214 (1939)
Q Consensus 1210 rLv~q 1214 (1939)
.+.++
T Consensus 244 ~~~~~ 248 (490)
T 2xm6_A 244 VLFSQ 248 (490)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66553
No 73
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.62 E-value=0.00016 Score=82.97 Aligned_cols=41 Identities=27% Similarity=0.288 Sum_probs=33.8
Q ss_pred CCCCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHH
Q 035724 205 LSSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLD 252 (1939)
Q Consensus 205 ~~~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~ 252 (1939)
....+++.|.+|+..++.. .-.+|.||+|+|||.++..++.
T Consensus 90 ~~~~l~~~Q~~ai~~~~~~-------~~~ll~~~tG~GKT~~a~~~~~ 130 (237)
T 2fz4_A 90 AEISLRDYQEKALERWLVD-------KRGCIVLPTGSGKTHVAMAAIN 130 (237)
T ss_dssp CCCCCCHHHHHHHHHHTTT-------SEEEEEESSSTTHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhC-------CCEEEEeCCCCCHHHHHHHHHH
Confidence 3468999999999998863 2379999999999999877763
No 74
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.57 E-value=0.013 Score=73.21 Aligned_cols=68 Identities=7% Similarity=0.046 Sum_probs=45.9
Q ss_pred hCCHHHHHHHHHHhcC---hHHHHHHHHHHHH----cCCHHHHHHHHHHc---cCHHH---HHHHHHh----cCChHHHH
Q 035724 1147 LGEYERAGRIYLERRE---EPELEKAGECFFL----AGCYKLAADVYAKG---KFFSE---CLAVCSK----GKLFEIGL 1209 (1939)
Q Consensus 1147 ag~~~~A~eLY~e~~~---e~~~~qaAe~fE~----~G~y~eAAelY~ka---gd~dk---AI~my~k----~k~fd~ai 1209 (1939)
.+++++|.++|.+... ...+...|..+.. .+++++|.++|.++ ++.+- .-.+|.. .+++++|+
T Consensus 200 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~ 279 (490)
T 2xm6_A 200 ERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKAL 279 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHH
Confidence 5677888888776522 2235566778876 78999999999886 33222 2235555 67888888
Q ss_pred HHHHh
Q 035724 1210 QYMNH 1214 (1939)
Q Consensus 1210 rLv~q 1214 (1939)
.+.++
T Consensus 280 ~~~~~ 284 (490)
T 2xm6_A 280 EWYRK 284 (490)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88774
No 75
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=97.54 E-value=9e-05 Score=82.31 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=33.1
Q ss_pred CCCCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHH
Q 035724 205 LSSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLL 251 (1939)
Q Consensus 205 ~~~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li 251 (1939)
....|++.|.+|+..++.. .-.+|.+|+|+|||.+...++
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~-------~~~li~~~tGsGKT~~~~~~~ 69 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEG-------KNIIICLPTGSGKTRVAVYIA 69 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTT-------CCEEEECSCHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHhcC-------CCEEEEcCCCCCHHHHHHHHH
Confidence 3468999999999999862 346999999999999876665
No 76
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.53 E-value=0.0028 Score=72.30 Aligned_cols=31 Identities=35% Similarity=0.538 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHHhhCHHHHHHHHHHhCC
Q 035724 1063 SSPEEWKSRGIKLFHEHNYDMATICFEKAKD 1093 (1939)
Q Consensus 1063 StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd 1093 (1939)
.+++.|..+|..++..+++++|+.+|+++-.
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 34 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD 34 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4567888899999999999999999988743
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.52 E-value=0.029 Score=67.52 Aligned_cols=218 Identities=10% Similarity=-0.080 Sum_probs=120.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcC----hHHHHHHHHHHHHcCCHHHHHHHHHHccCH-------H-
Q 035724 1126 EAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERRE----EPELEKAGECFFLAGCYKLAADVYAKGKFF-------S- 1193 (1939)
Q Consensus 1126 eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~----e~~~~qaAe~fE~~G~y~eAAelY~kagd~-------d- 1193 (1939)
-.+.+|...|++++|+++|.++-.. .....+ ...+...|.++...|++.+|.+.|.++-+. .
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 179 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKE------LPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSI 179 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT------GGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHH------HhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchh
Confidence 3455666677777777776655322 111000 112556788999999999888888776321 1
Q ss_pred -------HHHHHHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 035724 1194 -------ECLAVCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKF 1266 (1939)
Q Consensus 1194 -------kAI~my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~ 1266 (1939)
....+|...++|++|+...++--+.. ....... .....+...+..|...|+++.|+++
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~--------------~~~~~~~-~~~~~~~~lg~~y~~~~~~~~A~~~ 244 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELA--------------MDIQNDR-FIAISLLNIANSYDRSGDDQMAVEH 244 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------HHTTCHH-HHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--------------HHcCCHH-HHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 12335677889998888877422211 0000000 1112233347788999999999987
Q ss_pred HHHhccHHHHHHHHHhhcCHHHHHHHHHhcCCHHHHHHHHHHc--------------------------CC---HHHHHH
Q 035724 1267 VKSFRSVDLMRKFLKSLSCFDDLLVLEEESGNFMDAANIARLR--------------------------GD---IFLAVD 1317 (1939)
Q Consensus 1267 ~~~~~s~eeA~~~L~k~~~ldea~ell~e~G~feEAa~Lak~~--------------------------Gk---~~eAi~ 1317 (1939)
+...-..-....--.....+-..+..+...|++++|...+++. |+ +.+|+.
T Consensus 245 ~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~ 324 (378)
T 3q15_A 245 FQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS 324 (378)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 7643221100000000011233445667777777776655432 33 455555
Q ss_pred HHHHhCCHHHHHHHHHHHhhhhccccCCCCCCCCcchhhHHHHHHHHHhHhhhhhH
Q 035724 1318 LLQKAGCFKEACNVTLNHVISNSLWSPGSKGWPLKQFTKKKELLEKAKSLAKNESN 1373 (1939)
Q Consensus 1318 my~kAG~~~eA~rva~~~~~~~~l~~~~~~~~~~~~~~~ae~ll~~A~~~~~~~s~ 1373 (1939)
.+.+.+.+.....++. .++.++.. .+++.+|...+.+|....+.+-+
T Consensus 325 ~~~~~~~~~~~~~~~~--~la~~y~~-------~g~~~~A~~~~~~al~~~~~~~~ 371 (378)
T 3q15_A 325 YFEKKNLHAYIEACAR--SAAAVFES-------SCHFEQAAAFYRKVLKAQEDILK 371 (378)
T ss_dssp HHHHTTCHHHHHHHHH--HHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCChhHHHHHHH--HHHHHHHH-------CCCHHHHHHHHHHHHHHHHHHhc
Confidence 5555555544433322 34444443 45789999999999887666543
No 78
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=97.52 E-value=0.00034 Score=77.35 Aligned_cols=157 Identities=14% Similarity=0.107 Sum_probs=83.4
Q ss_pred cCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHH
Q 035724 1062 ASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAA 1141 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAa 1141 (1939)
..++..|..+|..++..++|+.|+.+|.++-.. +|. ....+...+..|...|++++|+
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---------------------~~~-~~~~~~~la~~~~~~~~~~~A~ 77 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE---------------------NKE-DAIPYINFANLLSSVNELERAL 77 (243)
T ss_dssp ----------------------CCTTHHHHHTT---------------------CTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh---------------------Ccc-cHHHHHHHHHHHHHcCCHHHHH
Confidence 445678999999999999999999999987331 111 1234566788888888888888
Q ss_pred HHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC--------HHHHHHHHHhcCChHHHHHHHH
Q 035724 1142 KCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF--------FSECLAVCSKGKLFEIGLQYMN 1213 (1939)
Q Consensus 1142 ecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd--------~dkAI~my~k~k~fd~airLv~ 1213 (1939)
++|.++- ++.. .....+...|.++...|++++|.++|.++-. +-....++.+.+++++|+.+.+
T Consensus 78 ~~~~~~~------~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 149 (243)
T 2q7f_A 78 AFYDKAL------ELDS--SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQ 149 (243)
T ss_dssp HHHHHHH------HHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHH------HcCC--cchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 8776542 2210 1123356678888899999999999887622 2233456677888888888777
Q ss_pred hhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 035724 1214 HWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKS 1269 (1939)
Q Consensus 1214 q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~ 1269 (1939)
+..+..+.. ...+...+..|...|+++.|++.+..
T Consensus 150 ~~~~~~~~~---------------------~~~~~~l~~~~~~~~~~~~A~~~~~~ 184 (243)
T 2q7f_A 150 RAVELNEND---------------------TEARFQFGMCLANEGMLDEALSQFAA 184 (243)
T ss_dssp HHHHHCTTC---------------------HHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHhCCcc---------------------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 433321111 11122335667778888877766553
No 79
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.51 E-value=0.00013 Score=88.01 Aligned_cols=113 Identities=14% Similarity=0.135 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcC----------------------CcEEEEccc--
Q 035724 211 DSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTK----------------------ASLIFCTAS-- 266 (1939)
Q Consensus 211 ~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~----------------------a~vI~~T~s-- 266 (1939)
++|.+++.........+..++..|++||||||||+++..+++.+... .++......
T Consensus 5 pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~ 84 (334)
T 1a5t_A 5 PWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG 84 (334)
T ss_dssp GGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT
T ss_pred CchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc
Confidence 45555555554433333456778999999999999999998766432 334433221
Q ss_pred ----chhhHHhh--------hccCCcEEEEeCCcccchH--HhhccccC-C-CcceEEEEe-ccccCCcceecc
Q 035724 267 ----SSYKLHRV--------AMEQLKFLVIDEAAQLKEV--ESAIPLKL-P-GIQHAILIG-DECQLPAMVESS 323 (1939)
Q Consensus 267 ----ss~~l~~l--------~~~~fdvVIIDEASQ~~E~--e~lipL~~-~-~~~rlVLiG-D~~QLpPvV~s~ 323 (1939)
+......+ ......++|||||..++.. ..++.... + +...+|++. ++..++|++.|.
T Consensus 85 ~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SR 158 (334)
T 1a5t_A 85 KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSR 158 (334)
T ss_dssp CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhc
Confidence 11111111 1245789999999999864 33333322 2 234556554 555677777553
No 80
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.50 E-value=9.7e-05 Score=88.15 Aligned_cols=94 Identities=10% Similarity=0.120 Sum_probs=62.2
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHh----cCCcEEEEcccc-hh---hHHhh----h----ccCCcEEEEeCCcccchH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCF----TKASLIFCTASS-SY---KLHRV----A----MEQLKFLVIDEAAQLKEV 293 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l----~~a~vI~~T~ss-s~---~l~~l----~----~~~fdvVIIDEASQ~~E~ 293 (1939)
.+..|++||||||||+++..+++.|. .+.+++...+.+ .. ....+ . ...+.++|||||..++..
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~ 97 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQ 97 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCHH
Confidence 57889999999999999999987653 245665544331 11 11111 1 235789999999999865
Q ss_pred --HhhccccC--CCcceEEEEe-ccccCCcceecc
Q 035724 294 --ESAIPLKL--PGIQHAILIG-DECQLPAMVESS 323 (1939)
Q Consensus 294 --e~lipL~~--~~~~rlVLiG-D~~QLpPvV~s~ 323 (1939)
.+++.... ++...+||+. ++..++|++.|.
T Consensus 98 a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR 132 (305)
T 2gno_A 98 AANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR 132 (305)
T ss_dssp HHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT
T ss_pred HHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce
Confidence 44444432 2345667664 566888888776
No 81
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.49 E-value=0.0033 Score=68.14 Aligned_cols=189 Identities=13% Similarity=0.020 Sum_probs=111.5
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHH
Q 035724 1064 SPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKC 1143 (1939)
Q Consensus 1064 tpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaec 1143 (1939)
.+.-|..+|..++..+++++|+.+|.++-... |. ....+...+..|...|++++|.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------------------~~-~~~~~~~l~~~~~~~~~~~~A~~~ 64 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD---------------------PK-NELAWLVRAEIYQYLKVNDKAQES 64 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------TT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---------------------cc-chHHHHHHHHHHHHcCChHHHHHH
Confidence 35688999999999999999999999763210 11 122455667777777777777776
Q ss_pred HHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHc-CCHHHHHHHHHHccC----------HHHHHHHHHhcCChHHHHHHH
Q 035724 1144 FYNLGEYERAGRIYLERREEPELEKAGECFFLA-GCYKLAADVYAKGKF----------FSECLAVCSKGKLFEIGLQYM 1212 (1939)
Q Consensus 1144 y~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~-G~y~eAAelY~kagd----------~dkAI~my~k~k~fd~airLv 1212 (1939)
|.++- ++.. .....+...|.++... |++++|.++|.++-. +-....++.+.+++++|+...
T Consensus 65 ~~~a~------~~~~--~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 136 (225)
T 2vq2_A 65 FRQAL------SIKP--DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYL 136 (225)
T ss_dssp HHHHH------HHCT--TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHH------HhCC--CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 65542 1100 1122355667778888 888888888877633 222344667778888888777
Q ss_pred HhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHHhhcCHHHHHHH
Q 035724 1213 NHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRSVDLMRKFLKSLSCFDDLLVL 1292 (1939)
Q Consensus 1213 ~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s~eeA~~~L~k~~~ldea~el 1292 (1939)
++..+..+.. ...+...+..|...|++++|.+.+...-..... . ....+.....+
T Consensus 137 ~~~~~~~~~~---------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~---~~~~~~~~~~~ 191 (225)
T 2vq2_A 137 KRSLAAQPQF---------------------PPAFKELARTKMLAGQLGDADYYFKKYQSRVEV-L---QADDLLLGWKI 191 (225)
T ss_dssp HHHHHHSTTC---------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS-C---CHHHHHHHHHH
T ss_pred HHHHHhCCCC---------------------chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C---CHHHHHHHHHH
Confidence 6433221100 111223366677888888888877643221100 0 00012233455
Q ss_pred HHhcCCHHHHHHHHH
Q 035724 1293 EEESGNFMDAANIAR 1307 (1939)
Q Consensus 1293 l~e~G~feEAa~Lak 1307 (1939)
+...|++++|....+
T Consensus 192 ~~~~~~~~~a~~~~~ 206 (225)
T 2vq2_A 192 AKALGNAQAAYEYEA 206 (225)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHH
Confidence 666777777755444
No 82
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=97.48 E-value=9.7e-05 Score=95.82 Aligned_cols=140 Identities=15% Similarity=0.137 Sum_probs=94.1
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccc--hhhHHh-----------
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASS--SYKLHR----------- 273 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~ss--s~~l~~----------- 273 (1939)
..++..|.+|+...+... ..+.+|.|++|+|||+++..++..+... ++++.++. ...+..
T Consensus 174 ~~~T~dQ~~al~~~~~~~-----~~~~vlta~RGRGKSa~lG~~~a~~~~~--~~vtAP~~~a~~~l~~~~~~~i~~~~P 246 (671)
T 2zpa_A 174 GAPQPEQQQLLKQLMTMP-----PGVAAVTAARGRGKSALAGQLISRIAGR--AIVTAPAKASTDVLAQFAGEKFRFIAP 246 (671)
T ss_dssp SSCCHHHHHHHHHHTTCC-----SEEEEEEECTTSSHHHHHHHHHHHSSSC--EEEECSSCCSCHHHHHHHGGGCCBCCH
T ss_pred CCCCHHHHHHHHHHHHhh-----hCeEEEecCCCCCHHHHHHHHHHHHHhC--cEEECCCHHHHHHHHHHhhCCeEEeCc
Confidence 368999999999998743 4678999999999999999888777543 44442221 111111
Q ss_pred ----hhccCCcEEEEeCCcccchHHhhccccCCCcceEEEEeccccCCcceeccccccccccCCHHHHHHh--cCCcccc
Q 035724 274 ----VAMEQLKFLVIDEAAQLKEVESAIPLKLPGIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSN--LGQAKHL 347 (1939)
Q Consensus 274 ----l~~~~fdvVIIDEASQ~~E~e~lipL~~~~~~rlVLiGD~~QLpPvV~s~~~~~~gl~~SLFeRL~~--~~~~~~~ 347 (1939)
......|+||||||++++.+.....+. ...++++.+.-++...+- +++--++.. .+...+.
T Consensus 247 d~~~~~~~~~dlliVDEAAaIp~pll~~ll~--~~~~v~~~tTv~GYEGtG-----------rgf~lk~~~~L~~~~~~~ 313 (671)
T 2zpa_A 247 DALLASDEQADWLVVDEAAAIPAPLLHQLVS--RFPRTLLTTTVQGYEGTG-----------RGFLLKFCARFPHLHRFE 313 (671)
T ss_dssp HHHHHSCCCCSEEEEETGGGSCHHHHHHHHT--TSSEEEEEEEBSSTTBBC-----------HHHHHHHHHTSTTCEEEE
T ss_pred hhhhhCcccCCEEEEEchhcCCHHHHHHHHh--hCCeEEEEecCCcCCCcC-----------cccccccHhhcCCCcEEE
Confidence 122457999999999999875544443 346899998877766543 222122221 1355678
Q ss_pred ccccccC--ChhhhccCcccc
Q 035724 348 LSIQYRM--HPSISSFPNSYF 366 (1939)
Q Consensus 348 L~~QYRm--hp~I~~f~S~~F 366 (1939)
|++-.|- +..|-.|.++.+
T Consensus 314 L~~piR~a~~DplE~wl~~~l 334 (671)
T 2zpa_A 314 LQQPIRWAQGCPLEKMVSEAL 334 (671)
T ss_dssp CCSCSSSCTTCHHHHHHHHHH
T ss_pred ccCceecCCCCCHHHHHHHhh
Confidence 8888888 447888877665
No 83
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.43 E-value=0.0025 Score=74.94 Aligned_cols=164 Identities=10% Similarity=0.060 Sum_probs=87.5
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHHHHhC
Q 035724 1069 KSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCFYNLG 1148 (1939)
Q Consensus 1069 ~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy~kag 1148 (1939)
...|..+...++|++|+.+|.+|..... . ..++......|..++.+|...|++++|+++|.++
T Consensus 40 ~~a~~~~~~~g~~~~A~~~~~~al~~~~-----~-----------~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~A- 102 (307)
T 2ifu_A 40 AKAAVAFKNAKQLEQAKDAYLQEAEAHA-----N-----------NRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKA- 102 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH-----H-----------TTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHH-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHH-----H-----------cCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH-
Confidence 3345556666888888888887644211 0 0122233445667777777777777776665533
Q ss_pred CHHHHHHHHHHhcCh----HHHHHHHHHHHHcCCHHHHHHHHHHccCHH--------------HHHHHHHhcCChHHHHH
Q 035724 1149 EYERAGRIYLERREE----PELEKAGECFFLAGCYKLAADVYAKGKFFS--------------ECLAVCSKGKLFEIGLQ 1210 (1939)
Q Consensus 1149 ~~~~A~eLY~e~~~e----~~~~qaAe~fE~~G~y~eAAelY~kagd~d--------------kAI~my~k~k~fd~air 1210 (1939)
.+++.+.-.. ..+...|.+++. |+|++|.++|.++-+.. ....+|.+.++|++|+.
T Consensus 103 -----l~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 176 (307)
T 2ifu_A 103 -----SVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA 176 (307)
T ss_dssp -----HHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -----HHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3333321111 124556777777 77777777776653221 12345566777777777
Q ss_pred HHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 035724 1211 YMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSF 1270 (1939)
Q Consensus 1211 Lv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~ 1270 (1939)
..++-.+..+ .... .......+...+..|...|+++.|.+++...
T Consensus 177 ~~~~al~~~~--------------~~~~-~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 177 SLQKEKSMYK--------------EMEN-YPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHHHHH--------------HTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH--------------HcCC-hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6663222110 0000 0011112223366677778888777766543
No 84
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.33 E-value=0.00024 Score=77.47 Aligned_cols=80 Identities=21% Similarity=0.176 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHhccc--CCCCCcEEEEeCCCCCchhHHHHHHHHHHh--cCCcEEEEcccchhhHH------------h
Q 035724 210 NDSQAQAVLSCLRRTH--CDHKATVELIWGPPGTGKTKTVSMLLDFCF--TKASLIFCTASSSYKLH------------R 273 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~~--~~~~~~v~LI~GPPGTGKTtti~~li~~~l--~~a~vI~~T~sss~~l~------------~ 273 (1939)
++.|++|+..+..-.. ........+|+|||||||||++..+...+. ....++..+........ .
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFL 95 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHH
Confidence 6789999888764221 111246779999999999999999987664 23345554432221100 0
Q ss_pred hhccCCcEEEEeCCcc
Q 035724 274 VAMEQLKFLVIDEAAQ 289 (1939)
Q Consensus 274 l~~~~fdvVIIDEASQ 289 (1939)
......+++|+||...
T Consensus 96 ~~~~~~~llilDE~~~ 111 (180)
T 3ec2_A 96 KTVLNSPVLVLDDLGS 111 (180)
T ss_dssp HHHHTCSEEEEETCSS
T ss_pred HHhcCCCEEEEeCCCC
Confidence 1124679999999974
No 85
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=97.32 E-value=0.00041 Score=81.27 Aligned_cols=80 Identities=16% Similarity=0.168 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHh-------------------------------
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCF------------------------------- 255 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l------------------------------- 255 (1939)
..+.+.|.+|+..++.. .-.+|.+|+|+|||.++..++...+
T Consensus 112 ~~l~~~Q~~ai~~~l~~-------~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~ 184 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVN-------RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFS 184 (282)
T ss_dssp CCCCHHHHHHHHHHHHH-------SEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCC
T ss_pred cCccHHHHHHHHHHHhc-------CCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccc
Confidence 47899999999999873 3358899999999999866652111
Q ss_pred ------------------cCCcEEEEcccchhhHHhhhccCCcEEEEeCCcccchH
Q 035724 256 ------------------TKASLIFCTASSSYKLHRVAMEQLKFLVIDEAAQLKEV 293 (1939)
Q Consensus 256 ------------------~~a~vI~~T~sss~~l~~l~~~~fdvVIIDEASQ~~E~ 293 (1939)
...+|+++|..+...........+++||||||..+...
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~vIiDEaH~~~~~ 240 (282)
T 1rif_A 185 HAMIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATGK 240 (282)
T ss_dssp GGGEEECSTTCSSTTCCCTTCSEEEECHHHHTTSCGGGGGGEEEEEEETGGGCCHH
T ss_pred cceEEEEeCCCcchhhhccCCcEEEEchHHHHhhHHHHHhhCCEEEEECCccCCcc
Confidence 23455665553322221122457899999999999866
No 86
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.32 E-value=0.1 Score=62.00 Aligned_cols=271 Identities=9% Similarity=0.042 Sum_probs=136.4
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHhCCc----chHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHH-----
Q 035724 1069 KSRGIKLFHEHNYDMATICFEKAKDS----YWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADS----- 1139 (1939)
Q Consensus 1069 ~~lG~~l~~q~~yd~A~kcF~rAgd~----~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~k----- 1139 (1939)
..+|..++..+++++|...+.++-.. .......+....... .....+...+...+.+|..+....|....
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEV-LHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHH-HHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 45566666667777777776664210 000011111110000 01112334445555555555555554321
Q ss_pred --HHHHHHHhCCHHHHHHHHHHhcC----------h---HHHHHHHHHHHHcCCHHHHHHHHHHccC-------------
Q 035724 1140 --AAKCFYNLGEYERAGRIYLERRE----------E---PELEKAGECFFLAGCYKLAADVYAKGKF------------- 1191 (1939)
Q Consensus 1140 --Aaecy~kag~~~~A~eLY~e~~~----------e---~~~~qaAe~fE~~G~y~eAAelY~kagd------------- 1191 (1939)
-+.++...|++++|.+.|.+... . ..+...|..+...|++++|.++|.++-.
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 23445555666666665554311 1 1244568888999999999999987622
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 035724 1192 FSECLAVCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFR 1271 (1939)
Q Consensus 1192 ~dkAI~my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~ 1271 (1939)
+.....++...|++++|..+.++-.+..... +.. . . ........-+..+...|+.++|...+...-
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~----~~~--------~-~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 242 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNG----KYH--------S-D-WISNANKVRVIYWQMTGDKAAAANWLRHTA 242 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS----CCC--------H-H-HHHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc----Ccc--------h-h-HHHHHHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 2223446677889999988887533211100 000 0 0 000000011344778899988888776432
Q ss_pred cHHHHHHHHHhhcCHHHHHHHHHhcCCHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhccccCCCCCCCC
Q 035724 1272 SVDLMRKFLKSLSCFDDLLVLEEESGNFMDAANIARLRGDIFLAVDLLQKAGCFKEACNVTLNHVISNSLWSPGSKGWPL 1351 (1939)
Q Consensus 1272 s~eeA~~~L~k~~~ldea~ell~e~G~feEAa~Lak~~Gk~~eAi~my~kAG~~~eA~rva~~~~~~~~l~~~~~~~~~~ 1351 (1939)
.......... ...+...+.++...|++++|...++ ++.+.....|.......+. ...+.+++..+
T Consensus 243 ~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~l~------~a~~~~~~~~~~~~~~~~~--~~la~~~~~~g------ 307 (373)
T 1hz4_A 243 KPEFANNHFL-QGQWRNIARAQILLGEFEPAEIVLE------ELNENARSLRLMSDLNRNL--LLLNQLYWQAG------ 307 (373)
T ss_dssp CCCCTTCGGG-HHHHHHHHHHHHHTTCHHHHHHHHH------HHHHHHHHTTCHHHHHHHH--HHHHHHHHHHT------
T ss_pred CCCCCcchhh-HHHHHHHHHHHHHcCCHHHHHHHHH------HHHHHHHhCcchhhHHHHH--HHHHHHHHHhC------
Confidence 2110000000 0012234466667777777766544 3334444444433332221 23455555544
Q ss_pred cchhhHHHHHHHHHhHhhh
Q 035724 1352 KQFTKKKELLEKAKSLAKN 1370 (1939)
Q Consensus 1352 ~~~~~ae~ll~~A~~~~~~ 1370 (1939)
++.+|...+.+|...+..
T Consensus 308 -~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 308 -RKSDAQRVLLDALKLANR 325 (373)
T ss_dssp -CHHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHhcc
Confidence 578999999999887664
No 87
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.30 E-value=0.0032 Score=70.25 Aligned_cols=161 Identities=12% Similarity=0.037 Sum_probs=98.1
Q ss_pred CchHhHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC----
Q 035724 1116 NPKQANVNLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF---- 1191 (1939)
Q Consensus 1116 ~~~ea~~~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd---- 1191 (1939)
+|......+...|..|...|++++|.++|.++- ++.. .....+...|.++...|++++|.++|.++-.
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al------~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 103 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKAL------EIDP--SSADAHAALAVVFQTEMEPKLADEEYRKALASDSR 103 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHH------HHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH------hcCC--ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 344334567788888888999999988876543 2200 1123466779999999999999999988722
Q ss_pred ----HHHHHHHHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 035724 1192 ----FSECLAVCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFV 1267 (1939)
Q Consensus 1192 ----~dkAI~my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~ 1267 (1939)
+-....+|...+++++|+++.++..+ .... .. ........+..|...|++++|++.+
T Consensus 104 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~--------------~~----~~~~~~~la~~~~~~g~~~~A~~~~ 164 (252)
T 2ho1_A 104 NARVLNNYGGFLYEQKRYEEAYQRLLEASQ-DTLY--------------PE----RSRVFENLGLVSLQMKKPAQAKEYF 164 (252)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-CTTC--------------TT----HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-CccC--------------cc----cHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 22344577889999999999885433 0000 00 1112223366788899999888876
Q ss_pred HHhccHHHHHHHHHhhcCHHHHHHHHHhcCCHHHHHHHHHH
Q 035724 1268 KSFRSVDLMRKFLKSLSCFDDLLVLEEESGNFMDAANIARL 1308 (1939)
Q Consensus 1268 ~~~~s~eeA~~~L~k~~~ldea~ell~e~G~feEAa~Lak~ 1308 (1939)
...-.... .....+-..+.++...|++++|...+++
T Consensus 165 ~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~ 200 (252)
T 2ho1_A 165 EKSLRLNR-----NQPSVALEMADLLYKEREYVPARQYYDL 200 (252)
T ss_dssp HHHHHHCS-----CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhcCc-----ccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 64321110 0001123344566667777777665543
No 88
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.30 E-value=7.7e-05 Score=97.11 Aligned_cols=53 Identities=25% Similarity=0.388 Sum_probs=40.8
Q ss_pred ceEEEEeecccCCCCCEEEEeccCCCCCccccccCCCCCCCCCChhHhhhhhHHHHhhhheeeeccccceEEEecccc
Q 035724 953 QALVLTIVESKGLEFQVIHYTSQCCNSPFKHALFDSTSPGSFPSFNEAKHNVLCSELKQLYVAITRTRQRLWIWENME 1030 (1939)
Q Consensus 953 ~~lVmTihesKGLEF~~Vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Elk~LYVA~TRAr~~L~I~d~~~ 1030 (1939)
.+-+||||+|||+|||.|+++--... .+. .+++++|||+||||++|+|+-+..
T Consensus 532 ~~~a~TihksqG~e~~~v~~~~~~~~---------------~~~----------~~~~~~Yva~tRa~~~l~l~~~~~ 584 (608)
T 1w36_D 532 TTWAMTVHKSQGSEFDHAALILPSQR---------------TPV----------VTRELVYTAVTRARRRLSLYADER 584 (608)
T ss_dssp SCSEEETTTTTTCCBSEEEEECCSSC---------------CSS----------SCHHHHHHHHTTBSSCEEEECCTT
T ss_pred eEEEEEEEecccccCCeEEEEeCCCc---------------cch----------hhhhhHHhhhhhhhceEEEEECHH
Confidence 45699999999999999999731111 010 257899999999999999998653
No 89
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.29 E-value=0.00068 Score=72.92 Aligned_cols=78 Identities=22% Similarity=0.306 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhc--------CCcEEEEcccchh-----------h
Q 035724 210 NDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFT--------KASLIFCTASSSY-----------K 270 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~--------~a~vI~~T~sss~-----------~ 270 (1939)
.+.+.+.+...+.. ..+...+|+||||||||+++..+++.+.. ...++...+.... .
T Consensus 27 ~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (195)
T 1jbk_A 27 RDEEIRRTIQVLQR----RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEER 102 (195)
T ss_dssp CHHHHHHHHHHHTS----SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHH
T ss_pred chHHHHHHHHHHhc----CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHH
Confidence 34556666666653 22455699999999999999999876643 4555544321110 0
Q ss_pred HHh----h-hccCCcEEEEeCCcccc
Q 035724 271 LHR----V-AMEQLKFLVIDEAAQLK 291 (1939)
Q Consensus 271 l~~----l-~~~~fdvVIIDEASQ~~ 291 (1939)
+.. + ......++||||+..+.
T Consensus 103 ~~~~~~~~~~~~~~~vl~iDe~~~l~ 128 (195)
T 1jbk_A 103 LKGVLNDLAKQEGNVILFIDELHTMV 128 (195)
T ss_dssp HHHHHHHHHHSTTTEEEEEETGGGGT
T ss_pred HHHHHHHHhhcCCCeEEEEeCHHHHh
Confidence 111 1 12346699999998875
No 90
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=97.29 E-value=0.00034 Score=77.36 Aligned_cols=35 Identities=29% Similarity=0.184 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVS 248 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~ 248 (1939)
..+++.|++|+..+++. .-.++.+|+|||||.+..
T Consensus 22 ~~~~~~Q~~~i~~~~~~-------~~~li~~~TGsGKT~~~~ 56 (207)
T 2gxq_A 22 TTPTPIQAAALPLALEG-------KDLIGQARTGTGKTLAFA 56 (207)
T ss_dssp CSCCHHHHHHHHHHHTT-------CCEEEECCTTSCHHHHHH
T ss_pred CCCCHHHHHHHHHHcCC-------CCEEEECCCCChHHHHHH
Confidence 46899999999999873 336999999999998743
No 91
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.00038 Score=83.42 Aligned_cols=45 Identities=11% Similarity=0.061 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhc
Q 035724 212 SQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFT 256 (1939)
Q Consensus 212 sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~ 256 (1939)
.|...+...+...-....++-.+|+||||||||+++..+++.+..
T Consensus 27 ~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 27 EDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455555555543322334566799999999999999999977743
No 92
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=97.26 E-value=0.02 Score=67.09 Aligned_cols=22 Identities=5% Similarity=-0.090 Sum_probs=13.2
Q ss_pred HHHHHHHHHhhCHHHHHHHHHH
Q 035724 1069 KSRGIKLFHEHNYDMATICFEK 1090 (1939)
Q Consensus 1069 ~~lG~~l~~q~~yd~A~kcF~r 1090 (1939)
..++..++..|+++.|+..++.
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~ 59 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKP 59 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCT
T ss_pred HHHHHHHHHCCCHHHHHHHhcc
Confidence 3456666666666666665544
No 93
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=97.26 E-value=0.00017 Score=100.61 Aligned_cols=68 Identities=15% Similarity=0.134 Sum_probs=49.5
Q ss_pred CceEEEEeecccCCCCCEEEEeccCCCCCccccccCCCCCCCCCChhH---------------hhhhhHHHHhhhheeee
Q 035724 952 KQALVLTIVESKGLEFQVIHYTSQCCNSPFKHALFDSTSPGSFPSFNE---------------AKHNVLCSELKQLYVAI 1016 (1939)
Q Consensus 952 ~~~lVmTihesKGLEF~~Vil~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~~Elk~LYVA~ 1016 (1939)
....|||+|+|||||||+|++.++..+.. |......+-++. ..+..+.+|++++|||+
T Consensus 586 d~V~i~t~~~argl~f~~V~l~G~~eg~~-------P~~~~~~~~l~~~~R~~l~~~g~~l~~~~~~~~~eer~l~y~al 658 (1166)
T 3u4q_B 586 DQVFVGNMDLSRMYGTSCTFVLGANDGVL-------PARPDENGVLSDDDREWLKTIGVELSSGGRERLLDEHFLIYMAF 658 (1166)
T ss_dssp SCEEEEESSSCCCSSCSEEEEECCBTTTT-------TTCCCCCSSSCHHHHHHHHHHTCCCCCCSSHHHHHHHHHHHHHH
T ss_pred CEEEEecCcccccCCCCEEEEeCCCcCCC-------CCCCCCCCCCCHHHHHHHHhCCCcCCCchHHHHHHhHHHHHHHH
Confidence 46779999999999999999999988722 211111111111 11245778999999999
Q ss_pred ccccceEEEe
Q 035724 1017 TRTRQRLWIW 1026 (1939)
Q Consensus 1017 TRAr~~L~I~ 1026 (1939)
|||+++|+|.
T Consensus 659 trA~~~L~ls 668 (1166)
T 3u4q_B 659 SSPSDRLYVS 668 (1166)
T ss_dssp TSCSSEEEEE
T ss_pred hcccCeEEEE
Confidence 9999999996
No 94
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.25 E-value=0.00038 Score=90.88 Aligned_cols=70 Identities=20% Similarity=0.250 Sum_probs=55.7
Q ss_pred cccCHHHHhhhcc-CCcEEEecCCCChHHHHHHHHHHHHhHhhhhhhcccccCCCccccccccccCccCCCCccccccee
Q 035724 717 FEVTDEQLEMILF-PKSSFILGRSGTGKTTILTMKLFQKEKLHHMAMDGFYGVNNSVTLHSSWESGAEEGLGETERPILR 795 (1939)
Q Consensus 717 f~l~~ee~~iI~~-p~~~~vlGrSGTGKTT~~L~kl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 795 (1939)
=.|+|+|.++|.. .+|++|+|+|||||||+++.|+..+ +.++ |. ..-+
T Consensus 8 ~~Ln~~Q~~av~~~~~~~lV~a~aGsGKT~~l~~ri~~l------~~~~----------------------~~---~~~~ 56 (647)
T 3lfu_A 8 DSLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWL------MSVE----------------------NC---SPYS 56 (647)
T ss_dssp TTCCHHHHHHHTCCSSCEEEEECTTSCHHHHHHHHHHHH------HHTS----------------------CC---CGGG
T ss_pred hcCCHHHHHHHhCCCCCEEEEECCCCCHHHHHHHHHHHH------HHhC----------------------CC---Chhh
Confidence 3589999999997 5899999999999999999999877 2211 00 1124
Q ss_pred EEEEecCHHHHHHHHHHHHHHH
Q 035724 796 QLFVTVSPKLCFAVKQHISQMI 817 (1939)
Q Consensus 796 qvfVT~S~~L~~~vk~~~~~l~ 817 (1939)
.+++|.+...+.+.++.+.++.
T Consensus 57 iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 57 IMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp EEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEEeccHHHHHHHHHHHHHHh
Confidence 8999999999999988877653
No 95
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.24 E-value=0.0018 Score=74.64 Aligned_cols=227 Identities=12% Similarity=0.025 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC--------HHH
Q 035724 1123 NLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF--------FSE 1194 (1939)
Q Consensus 1123 ~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd--------~dk 1194 (1939)
.+...|..|...|++++|+++|.++- +..- .....+...|.++...|++++|.++|.++-. +-.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~------~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 94 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVC------QAAP--EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAA 94 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHH------HHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH------HhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHH
Confidence 45667778888888888888776542 1100 1123356678999999999999999988732 223
Q ss_pred HHHHHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHH-HH-HHHhcCCHHHHHHHHHHhcc
Q 035724 1195 CLAVCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKC-AI-HYYGLQDKKSMMKFVKSFRS 1272 (1939)
Q Consensus 1195 AI~my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~a-a~-hy~kagD~k~A~~~~~~~~s 1272 (1939)
...+|...+++++|+...++..+..+..... ........ ......... +. .|...|+++.|++.+...-.
T Consensus 95 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 166 (327)
T 3cv0_A 95 LAVSHTNEHNANAALASLRAWLLSQPQYEQL---GSVNLQAD-----VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE 166 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC----------------------------CCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCccHHH---HHHHhHHH-----HHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHh
Confidence 4457788899999999888655433221000 00000000 000000000 11 25555566666655543211
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHhcCCHHHHHHHHHHc-----CC---HHHHHHHHHHhCCHHHHHHHHHHHh-----hhh
Q 035724 1273 VDLMRKFLKSLSCFDDLLVLEEESGNFMDAANIARLR-----GD---IFLAVDLLQKAGCFKEACNVTLNHV-----ISN 1339 (1939)
Q Consensus 1273 ~eeA~~~L~k~~~ldea~ell~e~G~feEAa~Lak~~-----Gk---~~eAi~my~kAG~~~eA~rva~~~~-----~~~ 1339 (1939)
.... ....+-..+..+...|++++|...+++. +. +..-+.+|...|++++|...+.+-. ...
T Consensus 167 ~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 241 (327)
T 3cv0_A 167 MNPN-----DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVR 241 (327)
T ss_dssp HSTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hCCC-----CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 1100 0011222345566667777776655432 11 1234556666777777766665542 222
Q ss_pred ccccCCCCCCCCcchhhHHHHHHHHHhHhhh
Q 035724 1340 SLWSPGSKGWPLKQFTKKKELLEKAKSLAKN 1370 (1939)
Q Consensus 1340 ~l~~~~~~~~~~~~~~~ae~ll~~A~~~~~~ 1370 (1939)
+++.-+......+++.+|...+.+|.+....
T Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 242 VMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 3333333344556789999999998886554
No 96
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.19 E-value=0.017 Score=64.63 Aligned_cols=131 Identities=14% Similarity=0.042 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcC------hHHHHHHHHHHHHcCCHHHHHHHHHHccCH--
Q 035724 1121 NVNLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERRE------EPELEKAGECFFLAGCYKLAADVYAKGKFF-- 1192 (1939)
Q Consensus 1121 ~~~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~------e~~~~qaAe~fE~~G~y~eAAelY~kagd~-- 1192 (1939)
...+...|..|...|++++|+++|.++ .+++.+..+ ...+...|.++...|++++|.++|.++-..
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 116 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDA------LAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 116 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHH------HHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 345677888999999999998887654 333332200 123667799999999999999999887433
Q ss_pred --------H------HHHHHHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcC
Q 035724 1193 --------S------ECLAVCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQ 1258 (1939)
Q Consensus 1193 --------d------kAI~my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kag 1258 (1939)
. ....+|...+++++|+.+.++..+..... .... .......+...+..|...|
T Consensus 117 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~-~~~~~~~~~~la~~~~~~g 183 (283)
T 3edt_B 117 KVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR------------LGPD-DPNVAKTKNNLASCYLKQG 183 (283)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH------------SCTT-CHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh------------cCCC-CHHHHHHHHHHHHHHHHcC
Confidence 1 22346678899999999888533321000 0000 0011122334477889999
Q ss_pred CHHHHHHHHHHh
Q 035724 1259 DKKSMMKFVKSF 1270 (1939)
Q Consensus 1259 D~k~A~~~~~~~ 1270 (1939)
++++|++++...
T Consensus 184 ~~~~A~~~~~~~ 195 (283)
T 3edt_B 184 KYQDAETLYKEI 195 (283)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999877643
No 97
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.18 E-value=0.0019 Score=85.77 Aligned_cols=120 Identities=13% Similarity=0.071 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHH
Q 035724 1065 PEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCF 1144 (1939)
Q Consensus 1065 peeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy 1144 (1939)
++.|..+|..+.++|+|++|+.+|++|-. + +|. ....+...|..|.+.|++++|+++|
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~-----------l----------~P~-~~~a~~nLg~~l~~~g~~~eA~~~~ 66 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE-----------V----------FPE-FAAAHSNLASVLQQQGKLQEALMHY 66 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------H----------CSC-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------h----------CCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 46789999999999999999999998721 0 122 2234677889999999999998887
Q ss_pred HHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC--------HHHHHHHHHhcCChHHHHHHHHh
Q 035724 1145 YNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF--------FSECLAVCSKGKLFEIGLQYMNH 1214 (1939)
Q Consensus 1145 ~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd--------~dkAI~my~k~k~fd~airLv~q 1214 (1939)
.++ .++-- -....+...|.++...|++++|.++|.++-+ +-....+|.+.|++++|+...++
T Consensus 67 ~~A------l~l~P--~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~ 136 (723)
T 4gyw_A 67 KEA------IRISP--TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRT 136 (723)
T ss_dssp HHH------HHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHH------HHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 654 33310 1123467789999999999999999988722 22233456677777777777664
No 98
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.18 E-value=0.0012 Score=74.21 Aligned_cols=80 Identities=16% Similarity=0.249 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhc-CCcEEEEcccchhhHH--h-hhccCCcEEEE
Q 035724 209 LNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFT-KASLIFCTASSSYKLH--R-VAMEQLKFLVI 284 (1939)
Q Consensus 209 LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~-~a~vI~~T~sss~~l~--~-l~~~~fdvVII 284 (1939)
-|....+.+..+.... ..+..+|+||||||||+++..+...+.. ...++..++....... . ......++|||
T Consensus 35 ~~~~~~~~l~~~~~~~----~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlii 110 (242)
T 3bos_A 35 GNDELIGALKSAASGD----GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTALLEGLEQFDLICI 110 (242)
T ss_dssp CCHHHHHHHHHHHHTC----SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGGGGTTGGGSSEEEE
T ss_pred CCHHHHHHHHHHHhCC----CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHHhccCCCEEEE
Confidence 4566666666666531 2467799999999999999999866543 3555555443321110 0 11245789999
Q ss_pred eCCcccch
Q 035724 285 DEAAQLKE 292 (1939)
Q Consensus 285 DEASQ~~E 292 (1939)
||+..+..
T Consensus 111 De~~~~~~ 118 (242)
T 3bos_A 111 DDVDAVAG 118 (242)
T ss_dssp ETGGGGTT
T ss_pred eccccccC
Confidence 99988754
No 99
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.15 E-value=0.00051 Score=78.40 Aligned_cols=37 Identities=22% Similarity=0.393 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHH
Q 035724 208 TLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLL 251 (1939)
Q Consensus 208 ~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li 251 (1939)
++.+.|.+++..+.. ....+|.||.|+|||+++..++
T Consensus 61 p~~~~q~~~i~~i~~-------g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 61 PVKKFESEILEAISQ-------NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp GGGGGHHHHHHHHHH-------CSEEEEECCTTSSHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhc-------CCEEEEEeCCCCCcHHhHHHHH
Confidence 467789999999887 4678999999999998776554
No 100
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=97.14 E-value=0.03 Score=62.81 Aligned_cols=115 Identities=12% Similarity=0.014 Sum_probs=78.1
Q ss_pred HhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHH
Q 035724 1077 HEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCFYNLGEYERAGRI 1156 (1939)
Q Consensus 1077 ~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eL 1156 (1939)
.+++|++|+.+|.++-.... .++......+...+..|...|++++|.++|.++- ++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~------------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al------~~ 72 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRA------------------LTDDERAQLLYERGVLYDSLGLRALARNDFSQAL------AI 72 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSC------------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------HH
T ss_pred ccchHHHHHHHHHHHHhccc------------------ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHH------Hc
Confidence 34789999999997644210 0111223456778888888999999988876543 22
Q ss_pred HHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC--------HHHHHHHHHhcCChHHHHHHHHhhhh
Q 035724 1157 YLERREEPELEKAGECFFLAGCYKLAADVYAKGKF--------FSECLAVCSKGKLFEIGLQYMNHWKQ 1217 (1939)
Q Consensus 1157 Y~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd--------~dkAI~my~k~k~fd~airLv~q~~d 1217 (1939)
.- .....+...|.++...|+|++|.++|.++-. +-....+|.+.+++++|+...++..+
T Consensus 73 ~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 139 (275)
T 1xnf_A 73 RP--DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 139 (275)
T ss_dssp CC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CC--CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 10 1123467789999999999999999988732 22334577788999999988885443
No 101
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=97.12 E-value=0.00068 Score=75.01 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVS 248 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~ 248 (1939)
..+++.|++|+..++.. .-.++.+|+|+|||.+..
T Consensus 24 ~~~~~~Q~~~i~~~~~~-------~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 24 EKPSPIQEESIPIALSG-------RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CSCCHHHHHHHHHHHTT-------CCEEEECCSSSTTHHHHH
T ss_pred CCCCHHHHHHHHHHccC-------CCEEEECCCCCchHHHHH
Confidence 46899999999999873 336999999999997554
No 102
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.11 E-value=0.00092 Score=80.88 Aligned_cols=50 Identities=22% Similarity=0.147 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHhccc-CCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCCc
Q 035724 210 NDSQAQAVLSCLRRTH-CDHKATVELIWGPPGTGKTKTVSMLLDFCFTKAS 259 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~~-~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a~ 259 (1939)
.+.+++++..+..... .....+..+|+||||||||+++..+.+.+.....
T Consensus 49 ~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~ 99 (368)
T 3uk6_A 49 QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTP 99 (368)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCC
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCC
Confidence 4555555444443221 1122346799999999999999999877754433
No 103
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.10 E-value=0.00069 Score=80.90 Aligned_cols=124 Identities=15% Similarity=0.154 Sum_probs=67.1
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHHh--cCCcEEEEcccchhh-HHh-----------hhccCCcEEEEeCCcccchH---
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFCF--TKASLIFCTASSSYK-LHR-----------VAMEQLKFLVIDEAAQLKEV--- 293 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~l--~~a~vI~~T~sss~~-l~~-----------l~~~~fdvVIIDEASQ~~E~--- 293 (1939)
...+|+||||||||+++.++...+. ....+++.++..... +.. -.....++|||||.+.....
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~~~~~~~ 232 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKNVPVLILDDIGAEQATSWV 232 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHHTSSEEEEETCCC------C
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCCHHH
Confidence 5569999999999999999987665 345666655432111 100 01235789999999754332
Q ss_pred -H-hhcccc---CCCcceEEEEec--cccCCcceec-cccccccccCCHHHHHHhcCCccccccccccC
Q 035724 294 -E-SAIPLK---LPGIQHAILIGD--ECQLPAMVES-SVSGEACLGRSLFERLSNLGQAKHLLSIQYRM 354 (1939)
Q Consensus 294 -e-~lipL~---~~~~~rlVLiGD--~~QLpPvV~s-~~~~~~gl~~SLFeRL~~~~~~~~~L~~QYRm 354 (1939)
. .+-.+. ......+|+.+. +.+|+..... ....+..+...+++|+........+=...||.
T Consensus 233 ~~~ll~~ll~~r~~~~~~~IitSN~~~~~l~~~~~~~~~g~~~~~~~~i~dRl~~~~~~i~l~g~s~R~ 301 (308)
T 2qgz_A 233 RDEVLQVILQYRMLEELPTFFTSNYSFADLERKWATIKGSDETWQAKRVMERVRYLAREFHLEGANRRL 301 (308)
T ss_dssp TTTTHHHHHHHHHHHTCCEEEEESSCHHHHHTTCC--------CCCCSHHHHHHHHEEEEECCSCCCC-
T ss_pred HHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHhhccCccchhhhHHHHHHHHHhCEEEEecCCcccc
Confidence 1 111121 112346777764 4444443210 00011235678999998765554444556664
No 104
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=97.10 E-value=0.01 Score=61.89 Aligned_cols=119 Identities=12% Similarity=0.023 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 035724 1066 EEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCFY 1145 (1939)
Q Consensus 1066 eeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy~ 1145 (1939)
.-|..+|..++..+++++|+.+|.++-... +. ....+...+..|...|++++|.++|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------------------~~-~~~~~~~~~~~~~~~~~~~~A~~~~~ 66 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD---------------------AF-DVDVALHLGIAYVKTGAVDRGTELLE 66 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT---------------------SC-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---------------------cc-ChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 467889999999999999999999875421 11 12345677888888888888887776
Q ss_pred HhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC--------HHHHHHHHHhcCChHHHHHHHHh
Q 035724 1146 NLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF--------FSECLAVCSKGKLFEIGLQYMNH 1214 (1939)
Q Consensus 1146 kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd--------~dkAI~my~k~k~fd~airLv~q 1214 (1939)
++- ++.. .....+...|..+...|++++|.++|.++-. +-....++.+.+++++|+.+.++
T Consensus 67 ~~~------~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 135 (186)
T 3as5_A 67 RSL------ADAP--DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKI 135 (186)
T ss_dssp HHH------HHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHH------hcCC--CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 543 2200 1123356678888888888888888877522 12223355566667766666664
No 105
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=97.09 E-value=0.00065 Score=76.32 Aligned_cols=34 Identities=26% Similarity=0.290 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTV 247 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti 247 (1939)
..+++.|++|+..++.. .-.++.+|+|+|||.+.
T Consensus 35 ~~~~~~Q~~~i~~~~~~-------~~~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 35 EEPSAIQQRAIMPIIEG-------HDVLAQAQSGTGKTGTF 68 (224)
T ss_dssp CSCCHHHHHHHHHHHTT-------CCEEEECCTTSSHHHHH
T ss_pred CCCcHHHHHHHHHHhcC-------CCEEEECCCCCcHHHHH
Confidence 46899999999999873 23699999999999874
No 106
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.08 E-value=0.0079 Score=68.54 Aligned_cols=81 Identities=19% Similarity=0.082 Sum_probs=45.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHH----cCCHHHHHHHHHHccC---HH---
Q 035724 1124 LREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFL----AGCYKLAADVYAKGKF---FS--- 1193 (1939)
Q Consensus 1124 y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~----~G~y~eAAelY~kagd---~d--- 1193 (1939)
+...+..|...|++++|+++|.++-.. -....+...|..+.. .|++++|.++|.++-+ .+
T Consensus 9 ~~~lg~~~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~ 78 (273)
T 1ouv_A 9 LVGLGAKSYKEKDFTQAKKYFEKACDL----------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCH 78 (273)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 445666666667777776666544321 111234455666777 7777777777766522 11
Q ss_pred HHHHHHHh----cCChHHHHHHHHh
Q 035724 1194 ECLAVCSK----GKLFEIGLQYMNH 1214 (1939)
Q Consensus 1194 kAI~my~k----~k~fd~airLv~q 1214 (1939)
....+|.. .+++++|+.+.++
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~ 103 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSK 103 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHH
Confidence 12234555 6667777666653
No 107
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.07 E-value=0.00075 Score=74.70 Aligned_cols=81 Identities=16% Similarity=0.194 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHhcccCC---CCCcEEEEeCCCCCchhHHHHHHHHHHhc-CCcEEEEcccchhh-HHh-----------
Q 035724 210 NDSQAQAVLSCLRRTHCD---HKATVELIWGPPGTGKTKTVSMLLDFCFT-KASLIFCTASSSYK-LHR----------- 273 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~~~~---~~~~v~LI~GPPGTGKTtti~~li~~~l~-~a~vI~~T~sss~~-l~~----------- 273 (1939)
++.|..++..+....... ..+...+|+||||||||+++..+...+.. ...++..++..... +..
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (202)
T 2w58_A 31 DDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKL 110 (202)
T ss_dssp SHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHH
T ss_pred ChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHH
Confidence 445665655444322111 11256799999999999999988866644 34555544332111 000
Q ss_pred hhccCCcEEEEeCCccc
Q 035724 274 VAMEQLKFLVIDEAAQL 290 (1939)
Q Consensus 274 l~~~~fdvVIIDEASQ~ 290 (1939)
-.....++|||||++..
T Consensus 111 ~~~~~~~~lilDei~~~ 127 (202)
T 2w58_A 111 DYIKKVPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHSSEEEEEEECCC
T ss_pred HHhcCCCEEEEcCCCCC
Confidence 01134689999999654
No 108
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.05 E-value=0.0012 Score=72.63 Aligned_cols=80 Identities=29% Similarity=0.341 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcC---CcEEEEcccch---hhHH----hh-----
Q 035724 210 NDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTK---ASLIFCTASSS---YKLH----RV----- 274 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~---a~vI~~T~sss---~~l~----~l----- 274 (1939)
.+...+.+...+... ..+..+|+||||||||+++..+.+.+... ..++...+... .... ..
T Consensus 22 ~~~~~~~l~~~l~~~----~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (226)
T 2chg_A 22 QDEVIQRLKGYVERK----NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAP 97 (226)
T ss_dssp CHHHHHHHHHHHHTT----CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSCC
T ss_pred cHHHHHHHHHHHhCC----CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhcccC
Confidence 456677777777632 12347999999999999999888665322 22333322211 1111 01
Q ss_pred -hccCCcEEEEeCCcccchH
Q 035724 275 -AMEQLKFLVIDEAAQLKEV 293 (1939)
Q Consensus 275 -~~~~fdvVIIDEASQ~~E~ 293 (1939)
......+|||||+..+...
T Consensus 98 ~~~~~~~vliiDe~~~l~~~ 117 (226)
T 2chg_A 98 IGGAPFKIIFLDEADALTAD 117 (226)
T ss_dssp STTCSCEEEEEETGGGSCHH
T ss_pred CCccCceEEEEeChhhcCHH
Confidence 1245689999999988654
No 109
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.04 E-value=0.018 Score=64.30 Aligned_cols=131 Identities=11% Similarity=0.015 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHH
Q 035724 1065 PEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCF 1144 (1939)
Q Consensus 1065 peeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy 1144 (1939)
...|..+|..++..++|++|+.+|.++-.. .... ...+.......+...|..|...|++++|+++|
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~---------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 108 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAI-----REKT---------LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLC 108 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HHHH---------TCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----HHHH---------cCCcchHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 457899999999999999999999987321 1100 00011123345667788888888888887777
Q ss_pred HHhCCHHHHHHHHHHhcC------hHHHHHHHHHHHHcCCHHHHHHHHHHccCH----------H------HHHHHHHhc
Q 035724 1145 YNLGEYERAGRIYLERRE------EPELEKAGECFFLAGCYKLAADVYAKGKFF----------S------ECLAVCSKG 1202 (1939)
Q Consensus 1145 ~kag~~~~A~eLY~e~~~------e~~~~qaAe~fE~~G~y~eAAelY~kagd~----------d------kAI~my~k~ 1202 (1939)
.++- +++.+..+ ...+...|.++...|++++|.++|.++-.. . ....+|.+.
T Consensus 109 ~~al------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 182 (283)
T 3edt_B 109 KRAL------EIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQ 182 (283)
T ss_dssp HHHH------HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHH------HHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc
Confidence 6543 33222100 112556688888888888888888776332 1 123456677
Q ss_pred CChHHHHHHHHhh
Q 035724 1203 KLFEIGLQYMNHW 1215 (1939)
Q Consensus 1203 k~fd~airLv~q~ 1215 (1939)
+++++|+.+.++.
T Consensus 183 g~~~~A~~~~~~~ 195 (283)
T 3edt_B 183 GKYQDAETLYKEI 195 (283)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 8888888777743
No 110
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.03 E-value=0.00087 Score=72.08 Aligned_cols=77 Identities=26% Similarity=0.313 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhc--------CCcEEEEcccchh-----------hH
Q 035724 211 DSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFT--------KASLIFCTASSSY-----------KL 271 (1939)
Q Consensus 211 ~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~--------~a~vI~~T~sss~-----------~l 271 (1939)
+.+.+.+...+.. ...+..+|+||||||||+++..+.+.+.. ...++...+.... ..
T Consensus 28 ~~~~~~l~~~l~~----~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (187)
T 2p65_A 28 DTEIRRAIQILSR----RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERL 103 (187)
T ss_dssp HHHHHHHHHHHTS----SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHH
T ss_pred hHHHHHHHHHHhC----CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHH
Confidence 3455555555543 12345699999999999999999877644 4555554332111 01
Q ss_pred Hh----h-hccCCcEEEEeCCcccc
Q 035724 272 HR----V-AMEQLKFLVIDEAAQLK 291 (1939)
Q Consensus 272 ~~----l-~~~~fdvVIIDEASQ~~ 291 (1939)
.. + ......++||||+..+.
T Consensus 104 ~~~~~~~~~~~~~~vl~iDe~~~l~ 128 (187)
T 2p65_A 104 KSILKEVQDAEGQVVMFIDEIHTVV 128 (187)
T ss_dssp HHHHHHHHHTTTSEEEEETTGGGGS
T ss_pred HHHHHHHHhcCCceEEEEeCHHHhc
Confidence 10 1 11246799999998875
No 111
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=97.02 E-value=0.00079 Score=79.63 Aligned_cols=79 Identities=18% Similarity=0.315 Sum_probs=54.9
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHH------------------------HH---------
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLL------------------------DF--------- 253 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li------------------------~~--------- 253 (1939)
..|++.|++|+..+++. .-.+|.+|+|+|||.+....+ +.
T Consensus 15 ~~l~~~Q~~~i~~i~~~-------~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~ 87 (337)
T 2z0m_A 15 KNFTEVQSKTIPLMLQG-------KNVVVRAKTGSGKTAAYAIPILELGMKSLVVTPTRELTRQVASHIRDIGRYMDTKV 87 (337)
T ss_dssp CSCCHHHHHHHHHHHTT-------CCEEEECCTTSSHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHHHTTTSCCCE
T ss_pred CCCCHHHHHHHHHHhcC-------CCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcE
Confidence 46899999999998873 346999999999998765444 00
Q ss_pred --------------HhcCCcEEEEcccchhhHHh---hhccCCcEEEEeCCcccch
Q 035724 254 --------------CFTKASLIFCTASSSYKLHR---VAMEQLKFLVIDEAAQLKE 292 (1939)
Q Consensus 254 --------------~l~~a~vI~~T~sss~~l~~---l~~~~fdvVIIDEASQ~~E 292 (1939)
.+..++|+++|......... .....+++||||||..+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~ 143 (337)
T 2z0m_A 88 AEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFE 143 (337)
T ss_dssp EEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHH
T ss_pred EEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhc
Confidence 11235677777654433222 2345689999999998754
No 112
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.01 E-value=0.032 Score=63.50 Aligned_cols=131 Identities=12% Similarity=0.067 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHH
Q 035724 1065 PEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCF 1144 (1939)
Q Consensus 1065 peeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy 1144 (1939)
..-|..+|..+...+++++|+.+|.++-.. .... ...+.......+...+.+|...|++++|.++|
T Consensus 69 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~---------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 134 (311)
T 3nf1_A 69 ATMLNILALVYRDQNKYKDAANLLNDALAI-----REKT---------LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLC 134 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HHHH---------HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----HHHH---------hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 356889999999999999999999987321 1100 00111223345678889999999999998887
Q ss_pred HHhCCHHHHHHHHHHh--cC----hHHHHHHHHHHHHcCCHHHHHHHHHHccCH----------------HHHHHHHHhc
Q 035724 1145 YNLGEYERAGRIYLER--RE----EPELEKAGECFFLAGCYKLAADVYAKGKFF----------------SECLAVCSKG 1202 (1939)
Q Consensus 1145 ~kag~~~~A~eLY~e~--~~----e~~~~qaAe~fE~~G~y~eAAelY~kagd~----------------dkAI~my~k~ 1202 (1939)
.++- +++.+. .. ...+...|.++...|++++|.++|.++-+. .....+|.+.
T Consensus 135 ~~a~------~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 208 (311)
T 3nf1_A 135 KRAL------EIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQ 208 (311)
T ss_dssp HHHH------HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHH------HHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 6654 333221 00 122567789999999999999999887332 1234467778
Q ss_pred CChHHHHHHHHhh
Q 035724 1203 KLFEIGLQYMNHW 1215 (1939)
Q Consensus 1203 k~fd~airLv~q~ 1215 (1939)
+++++|+.+.++-
T Consensus 209 g~~~~A~~~~~~a 221 (311)
T 3nf1_A 209 GKFKQAETLYKEI 221 (311)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 8999998888743
No 113
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=97.01 E-value=0.0079 Score=66.25 Aligned_cols=157 Identities=10% Similarity=0.060 Sum_probs=105.8
Q ss_pred cCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHH
Q 035724 1062 ASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAA 1141 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAa 1141 (1939)
...+.-|..+|..+...+++++|+.+|.++-.. ++. ....+...+.+|...|++++|.
T Consensus 54 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---------------------~~~-~~~~~~~la~~~~~~~~~~~A~ 111 (243)
T 2q7f_A 54 KEDAIPYINFANLLSSVNELERALAFYDKALEL---------------------DSS-AATAYYGAGNVYVVKEMYKEAK 111 (243)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------------------CCc-chHHHHHHHHHHHHhccHHHHH
Confidence 346788999999999999999999999986321 011 1234567788888888888888
Q ss_pred HHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC--------HHHHHHHHHhcCChHHHHHHHH
Q 035724 1142 KCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF--------FSECLAVCSKGKLFEIGLQYMN 1213 (1939)
Q Consensus 1142 ecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd--------~dkAI~my~k~k~fd~airLv~ 1213 (1939)
++|.++- ++.. .....+...|.++...|++++|.++|.++-. +-....++.+.+++++|+...+
T Consensus 112 ~~~~~~~------~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 183 (243)
T 2q7f_A 112 DMFEKAL------RAGM--ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFA 183 (243)
T ss_dssp HHHHHHH------HHTC--CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHH------HhCC--CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8776542 2210 1123466778999999999999999988632 2233446778888899988887
Q ss_pred hhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 035724 1214 HWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKS 1269 (1939)
Q Consensus 1214 q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~ 1269 (1939)
+..+..+.. ...+...+..|.+.|+++.|.+.+..
T Consensus 184 ~~~~~~~~~---------------------~~~~~~la~~~~~~~~~~~A~~~~~~ 218 (243)
T 2q7f_A 184 AVTEQDPGH---------------------ADAFYNAGVTYAYKENREKALEMLDK 218 (243)
T ss_dssp HHHHHCTTC---------------------HHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred HHHHhCccc---------------------HHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 533321111 11222336678888888888776553
No 114
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=97.00 E-value=0.00097 Score=79.76 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLL 251 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li 251 (1939)
..+++.|++|+..++.. ..-.++.+|+|||||.+....+
T Consensus 27 ~~~~~~Q~~~i~~~~~~------~~~~l~~~~TGsGKT~~~~~~~ 65 (367)
T 1hv8_A 27 EKPTDIQMKVIPLFLND------EYNIVAQARTGSGKTASFAIPL 65 (367)
T ss_dssp CSCCHHHHHHHHHHHHT------CSEEEEECCSSSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCC------CCCEEEECCCCChHHHHHHHHH
Confidence 46899999999999973 2457999999999998865443
No 115
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=96.95 E-value=0.0057 Score=67.69 Aligned_cols=126 Identities=12% Similarity=0.038 Sum_probs=88.0
Q ss_pred cCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHH
Q 035724 1062 ASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAA 1141 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAa 1141 (1939)
..+|+.|...|..++..++|++|+.+|.++-.... +... ..+...|..|...|++++|+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~--------------------~~~~-~~~~~~~~~~~~~~~~~~A~ 62 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN--------------------NQDS-VTAYNCGVCADNIKKYKEAA 62 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--------------------TCCH-HHHHHHHHHHHHTTCHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC--------------------CCCc-HHHHHHHHHHHHhhcHHHHH
Confidence 34678999999999999999999999998732110 0111 23344788888888888888
Q ss_pred HHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC---------------HHHHHHHHHhcCChH
Q 035724 1142 KCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF---------------FSECLAVCSKGKLFE 1206 (1939)
Q Consensus 1142 ecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd---------------~dkAI~my~k~k~fd 1206 (1939)
++|.++- ++.- .....+...|.++...|++++|.+.|.++-. +-..-.++.+.++++
T Consensus 63 ~~~~~al------~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 134 (228)
T 4i17_A 63 DYFDIAI------KKNY--NLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIE 134 (228)
T ss_dssp HHHHHHH------HTTC--SHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHH------HhCc--chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHH
Confidence 8776543 2100 0012366779999999999999999988722 222334667789999
Q ss_pred HHHHHHHhhh
Q 035724 1207 IGLQYMNHWK 1216 (1939)
Q Consensus 1207 ~airLv~q~~ 1216 (1939)
+|+...++--
T Consensus 135 ~A~~~~~~al 144 (228)
T 4i17_A 135 KAEENYKHAT 144 (228)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9998887533
No 116
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=96.95 E-value=0.012 Score=66.72 Aligned_cols=130 Identities=15% Similarity=0.106 Sum_probs=83.9
Q ss_pred cCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHH
Q 035724 1062 ASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAA 1141 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAa 1141 (1939)
..+++.+..+|..++..++|++|+.+|.++-.... .++ .....+...|..|.+.|++++|+
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p------------------~~~-~~~~a~~~lg~~~~~~~~~~~A~ 72 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR------------------THE-WAADAQFYLARAYYQNKEYLLAA 72 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS------------------CST-THHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC------------------CCc-chHHHHHHHHHHHHHhCcHHHHH
Confidence 46788999999999999999999999998743110 001 11234566777777888888887
Q ss_pred HHHHHhCCHHHHHHHHHHhcC-hHHHHHHHHHHHH--------cCCHHHHHHHHHHccC-------HHH-----------
Q 035724 1142 KCFYNLGEYERAGRIYLERRE-EPELEKAGECFFL--------AGCYKLAADVYAKGKF-------FSE----------- 1194 (1939)
Q Consensus 1142 ecy~kag~~~~A~eLY~e~~~-e~~~~qaAe~fE~--------~G~y~eAAelY~kagd-------~dk----------- 1194 (1939)
+.|.++ .+++-.... ...+-..|.++.. .|++.+|.+.|.++-. ...
T Consensus 73 ~~~~~~------l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~ 146 (261)
T 3qky_A 73 SEYERF------IQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK 146 (261)
T ss_dssp HHHHHH------HHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHH------HHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH
Confidence 776543 222110000 1124456777777 8888888888877621 121
Q ss_pred -------HHHHHHhcCChHHHHHHHHhhh
Q 035724 1195 -------CLAVCSKGKLFEIGLQYMNHWK 1216 (1939)
Q Consensus 1195 -------AI~my~k~k~fd~airLv~q~~ 1216 (1939)
...+|.+.|+|++|+...++.-
T Consensus 147 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l 175 (261)
T 3qky_A 147 LARKQYEAARLYERRELYEAAAVTYEAVF 175 (261)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 2346777888888888877543
No 117
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.93 E-value=0.0031 Score=64.55 Aligned_cols=94 Identities=15% Similarity=0.221 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 035724 1066 EEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCFY 1145 (1939)
Q Consensus 1066 eeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy~ 1145 (1939)
+.|+.+|..++++|+|++|+.+|.+|=.. +|. ....|...|..|.+.|++++|+++|.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~---------------------~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~ 71 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR---------------------DPE-NAILYSNRAACLTKLMEFQRALDDCD 71 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------CCC-CHHHHHHHhhHHHhhccHHHHHHHHH
Confidence 47899999999999999999999987210 122 23356778889999999999988776
Q ss_pred HhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 035724 1146 NLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKG 1189 (1939)
Q Consensus 1146 kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~ka 1189 (1939)
++ +++ .-.....+...|.++...|+|++|.+.|.++
T Consensus 72 ~a------l~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 107 (126)
T 4gco_A 72 TC------IRL--DSKFIKGYIRKAACLVAMREWSKAQRAYEDA 107 (126)
T ss_dssp HH------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HH------HHh--hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 53 333 1011234677788999999999998888775
No 118
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.93 E-value=0.0014 Score=83.73 Aligned_cols=103 Identities=18% Similarity=0.196 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHHHhccc-------------CCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccchhh--H--
Q 035724 209 LNDSQAQAVLSCLRRTH-------------CDHKATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSSYK--L-- 271 (1939)
Q Consensus 209 LN~sQ~~AV~~~L~~~~-------------~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss~~--l-- 271 (1939)
-++.+.+.+...+.... .....+..+|+||||||||+++..+.+.+ +..++...++.... .
T Consensus 43 G~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l--~~~~i~in~s~~~~~~~~~ 120 (516)
T 1sxj_A 43 GNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL--GYDILEQNASDVRSKTLLN 120 (516)
T ss_dssp SCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT--TCEEEEECTTSCCCHHHHH
T ss_pred CCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc--CCCEEEEeCCCcchHHHHH
Confidence 36777777777776310 00123578999999999999999988766 45555543332110 0
Q ss_pred ---Hh------h------------hccCCcEEEEeCCcccchH-----HhhccccCCCcceEEEEecc
Q 035724 272 ---HR------V------------AMEQLKFLVIDEAAQLKEV-----ESAIPLKLPGIQHAILIGDE 313 (1939)
Q Consensus 272 ---~~------l------------~~~~fdvVIIDEASQ~~E~-----e~lipL~~~~~~rlVLiGD~ 313 (1939)
.. + ......+|||||+..+... ..+..+.......+|+++..
T Consensus 121 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iIli~~~ 188 (516)
T 1sxj_A 121 AGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNE 188 (516)
T ss_dssp HTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEESC
T ss_pred HHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhcCCCEEEEEcC
Confidence 00 0 1135679999999877542 22222222233456777653
No 119
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.92 E-value=0.0011 Score=73.23 Aligned_cols=82 Identities=17% Similarity=0.148 Sum_probs=47.5
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHh-cCCcEEEEcccch------------------------hhHHhhhccCCcEEEE
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCF-TKASLIFCTASSS------------------------YKLHRVAMEQLKFLVI 284 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l-~~a~vI~~T~sss------------------------~~l~~l~~~~fdvVII 284 (1939)
..+.+|.||||+||||++..++.... .+.++++.+..-. ..+...-...+|+|||
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~~~~dvviI 82 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIEEDTRGVFI 82 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCCTTEEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhcCCCCEEEE
Confidence 35889999999999999977775443 3444444321100 0011111125799999
Q ss_pred eCCcccchH--HhhccccCCCcceEEEEec
Q 035724 285 DEAAQLKEV--ESAIPLKLPGIQHAILIGD 312 (1939)
Q Consensus 285 DEASQ~~E~--e~lipL~~~~~~rlVLiGD 312 (1939)
|||..+++. +.+..+.. ....+++.|=
T Consensus 83 DE~Q~~~~~~~~~l~~l~~-~~~~Vi~~Gl 111 (184)
T 2orw_A 83 DEVQFFNPSLFEVVKDLLD-RGIDVFCAGL 111 (184)
T ss_dssp CCGGGSCTTHHHHHHHHHH-TTCEEEEEEE
T ss_pred ECcccCCHHHHHHHHHHHH-CCCCEEEEee
Confidence 999887433 22222222 2456777774
No 120
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=96.91 E-value=0.0011 Score=75.33 Aligned_cols=35 Identities=23% Similarity=0.164 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVS 248 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~ 248 (1939)
..+++.|++|+..++.. .-.++.+|+|+|||.+..
T Consensus 46 ~~~~~~Q~~~i~~~~~~-------~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 46 RLVTEIQKQTIGLALQG-------KDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp CBCCHHHHHHHHHHHTT-------CCEEEECCTTSCHHHHHH
T ss_pred CCCCHHHHHHHHHHhCC-------CCEEEEeCCCCcHHHHHH
Confidence 46899999999999873 346999999999998643
No 121
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=96.90 E-value=0.01 Score=63.16 Aligned_cols=119 Identities=9% Similarity=0.008 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC--------HH
Q 035724 1122 VNLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF--------FS 1193 (1939)
Q Consensus 1122 ~~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd--------~d 1193 (1939)
..|...+..|.+.|++++|+++|.++ .++-- -....+...|.++...|++++|.+.|.++-. +.
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~a------l~~~p--~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 77 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKV------LKADP--NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYY 77 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHH------HHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH------HHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHH
Confidence 35778888999999999998887764 23200 1123467789999999999999999988722 22
Q ss_pred HHHHHHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 035724 1194 ECLAVCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKS 1269 (1939)
Q Consensus 1194 kAI~my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~ 1269 (1939)
....++...++++.+.....+..+..+.. ......-+..|.+.|++++|++.+..
T Consensus 78 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~---------------------~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (184)
T 3vtx_A 78 ILGSANFMIDEKQAAIDALQRAIALNTVY---------------------ADAYYKLGLVYDSMGEHDKAIEAYEK 132 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCccc---------------------hHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 23345667788888887776433322211 11122336778888998888876653
No 122
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=96.90 E-value=0.0013 Score=75.85 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVS 248 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~ 248 (1939)
..+++.|++|+..++.. .-.++.+|+|||||.+..
T Consensus 64 ~~~~~~Q~~~i~~i~~~-------~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 64 TKPTKIQIEAIPLALQG-------RDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp CSCCHHHHHHHHHHHTT-------CCEEEECCTTSCHHHHHH
T ss_pred CCCCHHHHHHHHHHhCC-------CCEEEEcCCCCCchhHhH
Confidence 36899999999999873 346999999999998643
No 123
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=96.90 E-value=0.0013 Score=74.27 Aligned_cols=34 Identities=26% Similarity=0.163 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTV 247 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti 247 (1939)
..+++.|++|+..++.. .-.++.+|.|||||.+.
T Consensus 41 ~~~~~~Q~~~i~~~~~~-------~~~l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 41 LKPTPIQSQAWPIILQG-------IDLIVVAQTGTGKTLSY 74 (228)
T ss_dssp CSCCHHHHHHHHHHHTT-------CCEEEECCTTSCHHHHH
T ss_pred CCCCHHHHHHHHHHhCC-------CCEEEECCCCChHHHHH
Confidence 36899999999999873 23599999999999764
No 124
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=96.89 E-value=0.0015 Score=82.71 Aligned_cols=81 Identities=16% Similarity=0.167 Sum_probs=56.4
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHh-------------------------------
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCF------------------------------- 255 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l------------------------------- 255 (1939)
..|++.|.+|+..++.. .-.+|.||+|+|||.+...++...+
T Consensus 112 ~~l~~~Q~~ai~~~~~~-------~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~ 184 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVN-------RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFS 184 (510)
T ss_dssp ECCCHHHHHHHHHHHHH-------SEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSC
T ss_pred CCCCHHHHHHHHHHHhc-------CCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCC
Confidence 47999999999999983 3469999999999999866552111
Q ss_pred ------------------cCCcEEEEcccchhhHHhhhccCCcEEEEeCCcccchHH
Q 035724 256 ------------------TKASLIFCTASSSYKLHRVAMEQLKFLVIDEAAQLKEVE 294 (1939)
Q Consensus 256 ------------------~~a~vI~~T~sss~~l~~l~~~~fdvVIIDEASQ~~E~e 294 (1939)
...+|+++|..+...........+++||||||..+....
T Consensus 185 ~~~v~~~~~~~~~~~~~~~~~~I~i~T~~~l~~~~~~~~~~~~liIiDE~H~~~~~~ 241 (510)
T 2oca_A 185 HAMIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATGKS 241 (510)
T ss_dssp GGGEEECGGGCCTTGGGCTTCSEEEEEHHHHTTSCGGGGGGEEEEEEETGGGCCHHH
T ss_pred ccceEEEecCCccccccccCCcEEEEeHHHHhhchhhhhhcCCEEEEECCcCCCccc
Confidence 234556655543322211234568999999999998654
No 125
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.89 E-value=0.0013 Score=77.41 Aligned_cols=99 Identities=25% Similarity=0.262 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCC---cEEEEcccch---h---h-HHhh-----
Q 035724 210 NDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTKA---SLIFCTASSS---Y---K-LHRV----- 274 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a---~vI~~T~sss---~---~-l~~l----- 274 (1939)
.+...+.+...+.. +..++ .+|+||||||||+++..+.+.+.... .++...++.. . . ....
T Consensus 22 ~~~~~~~l~~~l~~---~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (319)
T 2chq_A 22 QDEVIQRLKGYVER---KNIPH-LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAP 97 (319)
T ss_dssp CHHHHHHHHTTTTT---TCCCC-EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHhC---CCCCe-EEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHHHHHhcCC
Confidence 44455555555542 22234 79999999999999999987653221 2222222110 0 0 0111
Q ss_pred -hccCCcEEEEeCCcccchH--HhhccccC--CCcceEEEEec
Q 035724 275 -AMEQLKFLVIDEAAQLKEV--ESAIPLKL--PGIQHAILIGD 312 (1939)
Q Consensus 275 -~~~~fdvVIIDEASQ~~E~--e~lipL~~--~~~~rlVLiGD 312 (1939)
......+|||||+..++.. ..+..+.. ++..++|+++.
T Consensus 98 ~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~ 140 (319)
T 2chq_A 98 IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCN 140 (319)
T ss_dssp SSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEES
T ss_pred CCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 1245789999999998764 33333322 23345666654
No 126
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.88 E-value=0.00062 Score=81.16 Aligned_cols=100 Identities=19% Similarity=0.174 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccc--hhhHHh----h-h----cc
Q 035724 209 LNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASS--SYKLHR----V-A----ME 277 (1939)
Q Consensus 209 LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~ss--s~~l~~----l-~----~~ 277 (1939)
-++...+.+...+.. ...+++.++.||||||||+++..+.+.+ ...++-..++. ...... . . ..
T Consensus 30 g~~~~~~~l~~~l~~---~~~~~~~L~~G~~G~GKT~la~~la~~l--~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~ 104 (324)
T 3u61_B 30 LPAFDKETFKSITSK---GKIPHIILHSPSPGTGKTTVAKALCHDV--NADMMFVNGSDCKIDFVRGPLTNFASAASFDG 104 (324)
T ss_dssp CCHHHHHHHHHHHHT---TCCCSEEEECSSTTSSHHHHHHHHHHHT--TEEEEEEETTTCCHHHHHTHHHHHHHBCCCSS
T ss_pred CcHHHHHHHHHHHHc---CCCCeEEEeeCcCCCCHHHHHHHHHHHh--CCCEEEEcccccCHHHHHHHHHHHHhhcccCC
Confidence 456777777777773 2345778999999999999999988766 33444433322 111111 1 1 12
Q ss_pred CCcEEEEeCCcccc-hH--HhhccccC--CCcceEEEEecc
Q 035724 278 QLKFLVIDEAAQLK-EV--ESAIPLKL--PGIQHAILIGDE 313 (1939)
Q Consensus 278 ~fdvVIIDEASQ~~-E~--e~lipL~~--~~~~rlVLiGD~ 313 (1939)
...+|||||+..++ .. ..+..+.. ++..++|++.+.
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~ 145 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANN 145 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESS
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCC
Confidence 57899999999987 33 33333211 133466666543
No 127
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.87 E-value=0.00098 Score=80.55 Aligned_cols=46 Identities=22% Similarity=0.324 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHh
Q 035724 210 NDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCF 255 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l 255 (1939)
.+.+.+.+...+........++..+|+||||||||+++..+.+.+.
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 5667777777775331123356679999999999999999986653
No 128
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.87 E-value=0.00098 Score=74.70 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=19.9
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDF 253 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~ 253 (1939)
.-+.+|+||||||||+.+..++..
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHH
Confidence 458899999999999998776533
No 129
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.86 E-value=0.0019 Score=75.42 Aligned_cols=80 Identities=21% Similarity=0.206 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHHhccc---------CCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccch---------hh
Q 035724 209 LNDSQAQAVLSCLRRTH---------CDHKATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSS---------YK 270 (1939)
Q Consensus 209 LN~sQ~~AV~~~L~~~~---------~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss---------~~ 270 (1939)
-.+.+++.+...+.... ....+.-.+|+||||||||+++..+...+- ..++...++.. ..
T Consensus 21 G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~--~~~~~v~~~~~~~~~~~~~~~~ 98 (285)
T 3h4m_A 21 GLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN--ATFIRVVGSELVKKFIGEGASL 98 (285)
T ss_dssp SCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT--CEEEEEEGGGGCCCSTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC--CCEEEEehHHHHHhccchHHHH
Confidence 46677777776664310 012245579999999999999998886652 33333222110 00
Q ss_pred H----HhhhccCCcEEEEeCCccc
Q 035724 271 L----HRVAMEQLKFLVIDEAAQL 290 (1939)
Q Consensus 271 l----~~l~~~~fdvVIIDEASQ~ 290 (1939)
. .........+|+|||+..+
T Consensus 99 ~~~~~~~~~~~~~~vl~iDEid~l 122 (285)
T 3h4m_A 99 VKDIFKLAKEKAPSIIFIDEIDAI 122 (285)
T ss_dssp HHHHHHHHHHTCSEEEEEETTHHH
T ss_pred HHHHHHHHHHcCCeEEEEECHHHh
Confidence 1 1112345689999999765
No 130
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.86 E-value=0.00047 Score=77.32 Aligned_cols=71 Identities=24% Similarity=0.276 Sum_probs=42.2
Q ss_pred HHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccchhhHHhhhccCCcEEEEeCCccc
Q 035724 214 AQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSSYKLHRVAMEQLKFLVIDEAAQL 290 (1939)
Q Consensus 214 ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss~~l~~l~~~~fdvVIIDEASQ~ 290 (1939)
..++...+... ....-.+|+||||||||+++.++++.+.. +++....+.+. .........+++|+|||.+.
T Consensus 45 ~~~l~~~~~~i---Pkkn~ili~GPPGtGKTt~a~ala~~l~g--~i~~fans~s~-f~l~~l~~~kIiiLDEad~~ 115 (212)
T 1tue_A 45 LGALKSFLKGT---PKKNCLVFCGPANTGKSYFGMSFIHFIQG--AVISFVNSTSH-FWLEPLTDTKVAMLDDATTT 115 (212)
T ss_dssp HHHHHHHHHTC---TTCSEEEEESCGGGCHHHHHHHHHHHHTC--EECCCCCSSSC-GGGGGGTTCSSEEEEEECHH
T ss_pred HHHHHHHHhcC---CcccEEEEECCCCCCHHHHHHHHHHHhCC--CeeeEEeccch-hhhcccCCCCEEEEECCCch
Confidence 34555555531 11235799999999999999999887732 33332222111 10011134679999999854
No 131
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=96.85 E-value=0.003 Score=79.43 Aligned_cols=194 Identities=10% Similarity=-0.034 Sum_probs=122.3
Q ss_pred cCCHHHHHHHHHHHHHhhCH-HHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHH
Q 035724 1062 ASSPEEWKSRGIKLFHEHNY-DMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSA 1140 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~y-d~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kA 1140 (1939)
...+.-|..+|..++..++| ++|+.+|.+|-.. +|. ....|...|..|...|++++|
T Consensus 99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~---------------------~p~-~~~a~~~lg~~~~~~g~~~~A 156 (474)
T 4abn_A 99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL---------------------EPE-LVEAWNQLGEVYWKKGDVTSA 156 (474)
T ss_dssp CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH---------------------CTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh---------------------CCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 45678999999999999999 9999999986221 122 123567788888888999999
Q ss_pred HHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHc---------CCHHHHHHHHHHccC--------HHHHHHHHHhc-
Q 035724 1141 AKCFYNLGEYERAGRIYLERREEPELEKAGECFFLA---------GCYKLAADVYAKGKF--------FSECLAVCSKG- 1202 (1939)
Q Consensus 1141 aecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~---------G~y~eAAelY~kagd--------~dkAI~my~k~- 1202 (1939)
+++|.++-.... ....+...|..+... |+|++|.++|.++-+ +-....+|...
T Consensus 157 ~~~~~~al~~~p---------~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 227 (474)
T 4abn_A 157 HTCFSGALTHCK---------NKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLY 227 (474)
T ss_dssp HHHHHHHHTTCC---------CHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCC---------CHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 888877643211 112244556777777 888888888888722 22233345555
Q ss_pred -------CChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHH
Q 035724 1203 -------KLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRSVDL 1275 (1939)
Q Consensus 1203 -------k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s~ee 1275 (1939)
+++++|+...++-.+..+.. .-....+...+..|...|++++|.+++...-..+-
T Consensus 228 ~~~~~~~g~~~~A~~~~~~al~~~p~~------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 228 FNTGQNPKISQQALSAYAQAEKVDRKA------------------SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHCGGG------------------GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HhhccccchHHHHHHHHHHHHHhCCCc------------------ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 77888888877433221100 00112223347789999999999999874322211
Q ss_pred HHHHHHhhcCHHHHHHHHHhcCCHHHHHHHHHHc
Q 035724 1276 MRKFLKSLSCFDDLLVLEEESGNFMDAANIARLR 1309 (1939)
Q Consensus 1276 A~~~L~k~~~ldea~ell~e~G~feEAa~Lak~~ 1309 (1939)
. ....+..+..++...|++++|.+.+...
T Consensus 290 ~-----~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 290 A-----WPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp T-----CHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred C-----CHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 0 0011233456667778888888766643
No 132
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=96.85 E-value=0.029 Score=65.75 Aligned_cols=152 Identities=13% Similarity=0.020 Sum_probs=85.3
Q ss_pred cCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHH-
Q 035724 1062 ASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSA- 1140 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kA- 1140 (1939)
..++.-|..+|..+...|++++|+.+|.+.++. ......+.-+ ......+++...|+++.+.....-....+
T Consensus 98 P~~~~~~~~la~~~~~~g~~~~Al~~l~~~~~~-~~~~~l~~~~------~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~ 170 (291)
T 3mkr_A 98 VTNTTFLLMAASIYFYDQNPDAALRTLHQGDSL-ECMAMTVQIL------LKLDRLDLARKELKKMQDQDEDATLTQLAT 170 (291)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHTTCCSH-HHHHHHHHHH------HHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHhCCCCH-HHHHHHHHHH------HHCCCHHHHHHHHHHHHhhCcCcHHHHHHH
Confidence 346788999999999999999999999983221 1111111100 01112333333344333321100000111
Q ss_pred --HHHHHHhCCHHHHHHHHHHhc-----ChHHHHHHHHHHHHcCCHHHHHHHHHHc-----cCH---HHHHHHHHhcCCh
Q 035724 1141 --AKCFYNLGEYERAGRIYLERR-----EEPELEKAGECFFLAGCYKLAADVYAKG-----KFF---SECLAVCSKGKLF 1205 (1939)
Q Consensus 1141 --aecy~kag~~~~A~eLY~e~~-----~e~~~~qaAe~fE~~G~y~eAAelY~ka-----gd~---dkAI~my~k~k~f 1205 (1939)
..++...|++++|.++|.+.. ....+...|.++...|+|++|.+.|.++ ++. -..+.++...|.+
T Consensus 171 a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~ 250 (291)
T 3mkr_A 171 AWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKP 250 (291)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Confidence 122333467777777776652 1234777899999999999999999987 222 2233455566666
Q ss_pred HH-HHHHHHhhhhccc
Q 035724 1206 EI-GLQYMNHWKQHAD 1220 (1939)
Q Consensus 1206 d~-airLv~q~~d~l~ 1220 (1939)
++ +.+++++..+..+
T Consensus 251 ~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 251 PEVTNRYLSQLKDAHR 266 (291)
T ss_dssp HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCC
Confidence 65 5577765554333
No 133
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.85 E-value=0.001 Score=83.39 Aligned_cols=80 Identities=21% Similarity=0.427 Sum_probs=45.7
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccchhhHHhh--------hccCCcEEEEeCCcccchH--Hhhcccc
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSSYKLHRV--------AMEQLKFLVIDEAAQLKEV--ESAIPLK 300 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss~~l~~l--------~~~~fdvVIIDEASQ~~E~--e~lipL~ 300 (1939)
+..+|+||||||||+++..+.+.+-.....+.++..+....... ......+|||||+..++.. ..+++..
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~l 130 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHI 130 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHH
Confidence 45799999999999999988876533222222333222211111 1245789999999998764 3344443
Q ss_pred CCCcceEEEEec
Q 035724 301 LPGIQHAILIGD 312 (1939)
Q Consensus 301 ~~~~~rlVLiGD 312 (1939)
.. ..+++||-
T Consensus 131 e~--~~v~lI~a 140 (447)
T 3pvs_A 131 ED--GTITFIGA 140 (447)
T ss_dssp HT--TSCEEEEE
T ss_pred hc--CceEEEec
Confidence 32 34555553
No 134
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.84 E-value=0.0041 Score=69.14 Aligned_cols=43 Identities=21% Similarity=0.155 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHh
Q 035724 210 NDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCF 255 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l 255 (1939)
.+...+.+...+... ..++..+|+||||||||+++..+.+.+.
T Consensus 28 ~~~~~~~l~~~l~~~---~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 28 QEHVLTALANGLSLG---RIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CHHHHHHHHHHHHHT---CCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcC---CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 556667777777642 2235789999999999999998886553
No 135
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.84 E-value=0.0016 Score=76.41 Aligned_cols=61 Identities=26% Similarity=0.370 Sum_probs=38.1
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccch-----------hhHHhhh---------ccCCcEEEEeCCcc
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSS-----------YKLHRVA---------MEQLKFLVIDEAAQ 289 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss-----------~~l~~l~---------~~~fdvVIIDEASQ 289 (1939)
+...+|+||||||||+++..+.+.+ ...++...++.. .....+. .....+|+|||+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~ 127 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA--NAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDK 127 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH--TCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh--CCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhh
Confidence 3456999999999999999888766 233333222110 0011110 12368999999998
Q ss_pred cch
Q 035724 290 LKE 292 (1939)
Q Consensus 290 ~~E 292 (1939)
+..
T Consensus 128 l~~ 130 (310)
T 1ofh_A 128 ICK 130 (310)
T ss_dssp GSC
T ss_pred cCc
Confidence 864
No 136
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=96.83 E-value=0.0019 Score=80.98 Aligned_cols=81 Identities=25% Similarity=0.262 Sum_probs=56.2
Q ss_pred CCCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHH-----------------------h--c----
Q 035724 206 SSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFC-----------------------F--T---- 256 (1939)
Q Consensus 206 ~~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~-----------------------l--~---- 256 (1939)
...|++.|.+|+..++.. .-.+|.||.|+|||.+...++... + .
T Consensus 91 ~~~l~~~Q~~ai~~i~~~-------~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~ 163 (472)
T 2fwr_A 91 EISLRDYQEKALERWLVD-------KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGE 163 (472)
T ss_dssp CCCBCHHHHHHHHHHTTT-------TEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHHHHHHHGGGGCGGGEEE
T ss_pred CCCcCHHHHHHHHHHHhc-------CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHhCCCcceEE
Confidence 457999999999998873 237999999999999887666211 0 0
Q ss_pred -------CCcEEEEcccchhhHHhhhccCCcEEEEeCCcccchH
Q 035724 257 -------KASLIFCTASSSYKLHRVAMEQLKFLVIDEAAQLKEV 293 (1939)
Q Consensus 257 -------~a~vI~~T~sss~~l~~l~~~~fdvVIIDEASQ~~E~ 293 (1939)
..+|+++|..............+++||||||..+..+
T Consensus 164 ~~g~~~~~~~Ivv~T~~~l~~~~~~~~~~~~liIvDEaH~~~~~ 207 (472)
T 2fwr_A 164 FSGRIKELKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAE 207 (472)
T ss_dssp BSSSCBCCCSEEEEEHHHHHHTHHHHTTTCSEEEEETGGGTTST
T ss_pred ECCCcCCcCCEEEEEcHHHHHHHHHhcCCCCEEEEECCcCCCCh
Confidence 2356666654433322222246999999999998765
No 137
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=96.83 E-value=0.0064 Score=62.08 Aligned_cols=96 Identities=17% Similarity=0.247 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 035724 1066 EEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCFY 1145 (1939)
Q Consensus 1066 eeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy~ 1145 (1939)
..|+.+|..++++|+|++|+.+|.+|=. + +|.. ...|...|..|.+.|++++|+++|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~-----------~----------~p~~-~~~~~nlg~~~~~~~~~~~A~~~~~ 66 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE-----------L----------DPSN-ITFYNNKAAVYFEEKKFAECVQFCE 66 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------H----------CTTC-HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------h----------CCCC-HHHHHhHHHHHHHhhhHHHHHHHHH
Confidence 4689999999999999999999998722 0 2322 3356778899999999999988776
Q ss_pred HhCCHHHHHHHHHHhcC-----hHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 035724 1146 NLGEYERAGRIYLERRE-----EPELEKAGECFFLAGCYKLAADVYAKG 1189 (1939)
Q Consensus 1146 kag~~~~A~eLY~e~~~-----e~~~~qaAe~fE~~G~y~eAAelY~ka 1189 (1939)
++ +++..+... ...+...|.+++..|+|++|.++|.++
T Consensus 67 ~a------l~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 67 KA------VEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HH------HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HH------HHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 54 333322111 013556688888888888888887654
No 138
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.83 E-value=0.0027 Score=72.80 Aligned_cols=80 Identities=15% Similarity=0.172 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHhcccC--------CCCCcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccch---------hhHH
Q 035724 210 NDSQAQAVLSCLRRTHC--------DHKATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSS---------YKLH 272 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~~~--------~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss---------~~l~ 272 (1939)
.+.+++.+...+..... ...+...+|+||||||||+++..+...+- ..++...++.. ....
T Consensus 11 ~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 88 (262)
T 2qz4_A 11 MHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ--VPFLAMAGAEFVEVIGGLGAARVR 88 (262)
T ss_dssp CHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT--CCEEEEETTTTSSSSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC--CCEEEechHHHHhhccChhHHHHH
Confidence 45566666655432110 02234569999999999999999887653 33333322211 0111
Q ss_pred ----hhhccCCcEEEEeCCcccc
Q 035724 273 ----RVAMEQLKFLVIDEAAQLK 291 (1939)
Q Consensus 273 ----~l~~~~fdvVIIDEASQ~~ 291 (1939)
........+|+|||+..+.
T Consensus 89 ~~~~~a~~~~~~vl~iDeid~l~ 111 (262)
T 2qz4_A 89 SLFKEARARAPCIVYIDEIDAVG 111 (262)
T ss_dssp HHHHHHHHTCSEEEEEECC----
T ss_pred HHHHHHHhcCCeEEEEeCcchhh
Confidence 1122346899999998763
No 139
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=96.81 E-value=0.0026 Score=77.54 Aligned_cols=35 Identities=23% Similarity=0.220 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHH
Q 035724 208 TLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSM 249 (1939)
Q Consensus 208 ~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~ 249 (1939)
.+++.|++|+..++.. .-.+|.+|+|+|||.+...
T Consensus 43 ~~~~~Q~~~i~~i~~~-------~~~li~a~TGsGKT~~~~~ 77 (400)
T 1s2m_A 43 KPSPIQEEAIPVAITG-------RDILARAKNGTGKTAAFVI 77 (400)
T ss_dssp SCCHHHHHHHHHHHHT-------CCEEEECCTTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHhcC-------CCEEEECCCCcHHHHHHHH
Confidence 5899999999999973 2369999999999986543
No 140
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.80 E-value=0.001 Score=79.44 Aligned_cols=81 Identities=19% Similarity=0.247 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhc-CCcEEEEcccchhh-H-Hhh----------hc
Q 035724 210 NDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFT-KASLIFCTASSSYK-L-HRV----------AM 276 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~-~a~vI~~T~sss~~-l-~~l----------~~ 276 (1939)
|.....++..++.... ...+..+|+||||||||+++..+...+.. ...++..++..... + ... ..
T Consensus 19 ~~~a~~~~~~~~~~~~--~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (324)
T 1l8q_A 19 NRLAYEVVKEALENLG--SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMY 96 (324)
T ss_dssp THHHHHHHHHHHHTTT--TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcC--CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHh
Confidence 3333444444444221 12345699999999999999999876654 45666654432211 0 000 11
Q ss_pred cCCcEEEEeCCcccch
Q 035724 277 EQLKFLVIDEAAQLKE 292 (1939)
Q Consensus 277 ~~fdvVIIDEASQ~~E 292 (1939)
...++++|||+..+..
T Consensus 97 ~~~~vL~iDEi~~l~~ 112 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSG 112 (324)
T ss_dssp HTCSEEEEECGGGGTT
T ss_pred cCCCEEEEcCcccccC
Confidence 3478999999998763
No 141
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=96.80 E-value=0.0098 Score=66.18 Aligned_cols=150 Identities=12% Similarity=-0.008 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC--------HHH
Q 035724 1123 NLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF--------FSE 1194 (1939)
Q Consensus 1123 ~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd--------~dk 1194 (1939)
.+...+..|.+.|++++|+.+|.++-..+- .....+...|.++...|++++|.+.|.++-. +-.
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~ 78 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKENP--------QDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMV 78 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSS--------SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 345667777777777777777654321100 1113366778899999999999999988722 122
Q ss_pred HHHHHHhc-----------CChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHH
Q 035724 1195 CLAVCSKG-----------KLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSM 1263 (1939)
Q Consensus 1195 AI~my~k~-----------k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A 1263 (1939)
...++.+. |++++|+...++--+..+.. ......-+..|...|++++|
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~---------------------~~~~~~lg~~~~~~g~~~~A 137 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY---------------------APLHLQRGLVYALLGERDKA 137 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC---------------------HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc---------------------HHHHHHHHHHHHHcCChHHH
Confidence 23355566 77888887776433222111 11112236678889998888
Q ss_pred HHHHHHhccHHHHHHHHHhhcCHHHHHHHHHhcCCHHHHHHHHH
Q 035724 1264 MKFVKSFRSVDLMRKFLKSLSCFDDLLVLEEESGNFMDAANIAR 1307 (1939)
Q Consensus 1264 ~~~~~~~~s~eeA~~~L~k~~~ldea~ell~e~G~feEAa~Lak 1307 (1939)
++.++..-..+. .-..+-....++...|++++|...++
T Consensus 138 ~~~~~~al~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~ 175 (217)
T 2pl2_A 138 EASLKQALALED------TPEIRSALAELYLSMGRLDEALAQYA 175 (217)
T ss_dssp HHHHHHHHHHCC------CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhccc------chHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 876653211110 00111233455566666666655444
No 142
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=96.80 E-value=0.0011 Score=75.67 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHH
Q 035724 208 TLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVS 248 (1939)
Q Consensus 208 ~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~ 248 (1939)
.+++.|.+|+..++.. .-.+|.+|+|||||.+..
T Consensus 52 ~~~~~Q~~ai~~i~~~-------~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 52 KPSAIQQRAIIPCIKG-------YDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp SCCHHHHHHHHHHHTT-------CCEEECCCSSHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCC-------CCEEEECCCCCcHHHHHH
Confidence 5899999999999873 236999999999998743
No 143
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=96.78 E-value=0.0013 Score=76.29 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTV 247 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti 247 (1939)
..+++.|.+|+..++.. .-.++++|.|||||.+.
T Consensus 75 ~~~~~~Q~~~i~~~~~~-------~~~lv~a~TGsGKT~~~ 108 (262)
T 3ly5_A 75 TNMTEIQHKSIRPLLEG-------RDLLAAAKTGSGKTLAF 108 (262)
T ss_dssp CBCCHHHHHHHHHHHHT-------CCCEECCCTTSCHHHHH
T ss_pred CCCCHHHHHHHHHHhCC-------CcEEEEccCCCCchHHH
Confidence 35899999999999983 22599999999999864
No 144
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.01 Score=72.07 Aligned_cols=222 Identities=12% Similarity=0.019 Sum_probs=117.2
Q ss_pred CCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHH
Q 035724 1063 SSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAK 1142 (1939)
Q Consensus 1063 StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAae 1142 (1939)
|.|..=...|..++++|+|++|++.|.++-+..... ..+... ..............+...+.+|.+.|++++|.+
T Consensus 2 s~p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~-~~~~~~----~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~ 76 (434)
T 4b4t_Q 2 SLPGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQ-SSAAAG----ASVDDKRRNEQETSILELGQLYVTMGAKDKLRE 76 (434)
T ss_dssp CSTTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCS-SSBSSS----SSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccc-chhHHH----HHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHH
Confidence 456666788999999999999999999763211000 000000 000000001122346677888888899999888
Q ss_pred HHHHhCCHHHHH-HHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccCH--------------HHHHHHHHhcCChHH
Q 035724 1143 CFYNLGEYERAG-RIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKFF--------------SECLAVCSKGKLFEI 1207 (1939)
Q Consensus 1143 cy~kag~~~~A~-eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd~--------------dkAI~my~k~k~fd~ 1207 (1939)
+|.++..+.... +-+.. .......|.++...|++++|.++|.++-.. .+-..+|...|+|++
T Consensus 77 ~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 153 (434)
T 4b4t_Q 77 FIPHSTEYMMQFAKSKTV---KVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKD 153 (434)
T ss_dssp HHHHTHHHHHTSCHHHHH---HHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHccchHHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHH
Confidence 887664332110 00000 011223455556667788888777765332 234556777888888
Q ss_pred HHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHH--HHHhhcC
Q 035724 1208 GLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRSVDLMRK--FLKSLSC 1285 (1939)
Q Consensus 1208 airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s~eeA~~--~L~k~~~ 1285 (1939)
|+.++++........ ..-.....-++.. +..|...||++.|..++........+.. .......
T Consensus 154 A~~~l~~~~~~~~~~--------------~~~~~~~~~~~~~-~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 218 (434)
T 4b4t_Q 154 SLALINDLLREFKKL--------------DDKPSLVDVHLLE-SKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAEL 218 (434)
T ss_dssp HHHHHHHHHHHHTTS--------------SCSTHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhc--------------ccchhHHHHHHHH-HHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHH
Confidence 888877433211100 0000111122333 6779999999999988765432221100 0000011
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 035724 1286 FDDLLVLEEESGNFMDAANIAR 1307 (1939)
Q Consensus 1286 ldea~ell~e~G~feEAa~Lak 1307 (1939)
+.....++...|+|++|...+.
T Consensus 219 ~~~~g~~~~~~~~y~~A~~~~~ 240 (434)
T 4b4t_Q 219 DLMSGILHCEDKDYKTAFSYFF 240 (434)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHH
Confidence 1222345566777777765443
No 145
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.77 E-value=0.0052 Score=66.41 Aligned_cols=111 Identities=11% Similarity=-0.069 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHH
Q 035724 1065 PEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCF 1144 (1939)
Q Consensus 1065 peeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy 1144 (1939)
-..|...|..+++.|+|++|+.+|.+|=..... +.. ...+ ...+. ....|...+..+.+.|++++|+.+|
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~-----~~~---~~a~-~~~~~-~a~a~~n~g~al~~Lgr~~eAl~~~ 80 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHT-----MPP---EEAF-DHAGF-DAFCHAGLAEALAGLRSFDEALHSA 80 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT-----SCT---TSCC-CHHHH-HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-----Ccc---hhhh-hhccc-hHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 458999999999999999999999987331110 000 0000 00011 1226888899999999999999997
Q ss_pred HHhCCHHHHHHHHHHhc--Ch---HHH----HHHHHHHHHcCCHHHHHHHHHHccC
Q 035724 1145 YNLGEYERAGRIYLERR--EE---PEL----EKAGECFFLAGCYKLAADVYAKGKF 1191 (1939)
Q Consensus 1145 ~kag~~~~A~eLY~e~~--~e---~~~----~qaAe~fE~~G~y~eAAelY~kagd 1191 (1939)
.++- +++.+.. .+ ..| -..|.++...|+|++|.+.|.++-+
T Consensus 81 ~kAL------~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 81 DKAL------HYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHH------HHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHH------HhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6554 3332221 11 235 6778899999999999888876533
No 146
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.76 E-value=0.0045 Score=65.91 Aligned_cols=117 Identities=11% Similarity=0.081 Sum_probs=81.8
Q ss_pred hhHHHHHhhcc-ceehcccchHHHHHhhhcCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhh
Q 035724 1034 KPMFDYWKKKS-LVQVRQLDDSLAQAMQVASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRC 1112 (1939)
Q Consensus 1034 ~Pm~~yw~~~~-Lvqv~~lde~l~~~l~v~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~ 1112 (1939)
.-+.++..... +.++..++++ +++.|..+|..++..|+|++|+.+|.++-..
T Consensus 13 ~~l~~~~~~~~~l~~al~l~p~---------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~------------------ 65 (151)
T 3gyz_A 13 TAVIDAINSGATLKDINAIPDD---------MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY------------------ 65 (151)
T ss_dssp HHHHHHHHTSCCTGGGCCSCHH---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHCCCCHHHHhCCCHH---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------
Confidence 44455555433 3344444444 3558999999999999999999999976220
Q ss_pred hcCCchHhHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 035724 1113 RSSNPKQANVNLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKG 1189 (1939)
Q Consensus 1113 ~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~ka 1189 (1939)
+|. ....|...+..|...|++++|+++|.++- ++-- -....+-..|.++...|++++|.+.|.++
T Consensus 66 ---~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al------~l~P--~~~~~~~~lg~~~~~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 66 ---DFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAF------ALGK--NDYTPVFHTGQCQLRLKAPLKAKECFELV 130 (151)
T ss_dssp ---CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHSS--SCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---CCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHH------hhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 232 23456788899999999999988887653 3200 11234667799999999999999988775
No 147
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.74 E-value=0.0018 Score=77.62 Aligned_cols=97 Identities=23% Similarity=0.343 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHh----cCCcEEEEcccc---hhhH----Hhh------
Q 035724 212 SQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCF----TKASLIFCTASS---SYKL----HRV------ 274 (1939)
Q Consensus 212 sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l----~~a~vI~~T~ss---s~~l----~~l------ 274 (1939)
...+.+...+... ..++ .+|+||||||||+++..+.+.+. ....++...++. ...+ ...
T Consensus 44 ~~~~~l~~~l~~~---~~~~-~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (353)
T 1sxj_D 44 HAVTVLKKTLKSA---NLPH-MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVS 119 (353)
T ss_dssp TTHHHHHHHTTCT---TCCC-EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHHHSCCC
T ss_pred HHHHHHHHHHhcC---CCCE-EEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHHHhhhccc
Confidence 3445566665531 1133 79999999999999998886643 223444433221 1100 000
Q ss_pred ----------hccCCcEEEEeCCcccchH--Hhhcccc--CCCcceEEEEec
Q 035724 275 ----------AMEQLKFLVIDEAAQLKEV--ESAIPLK--LPGIQHAILIGD 312 (1939)
Q Consensus 275 ----------~~~~fdvVIIDEASQ~~E~--e~lipL~--~~~~~rlVLiGD 312 (1939)
....+.+|||||+..++.. ..+..+. .+...++|+++.
T Consensus 120 ~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 120 KPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp CCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEES
T ss_pred ccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeC
Confidence 1134679999999988754 2232221 123456777764
No 148
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.73 E-value=0.0023 Score=71.68 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHH
Q 035724 208 TLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLL 251 (1939)
Q Consensus 208 ~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li 251 (1939)
.+++.|++|+..++.. .-.++.+|+|+|||.+....+
T Consensus 36 ~~~~~Q~~~i~~~~~~-------~~~li~~~TGsGKT~~~~~~~ 72 (220)
T 1t6n_A 36 HPSEVQHECIPQAILG-------MDVLCQAKSGMGKTAVFVLAT 72 (220)
T ss_dssp CCCHHHHHHHHHHHTT-------CCEEEECCTTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCC-------CCEEEECCCCCchhhhhhHHH
Confidence 5899999999999873 236999999999998665443
No 149
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.72 E-value=0.0016 Score=69.57 Aligned_cols=75 Identities=16% Similarity=0.260 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhc-CCcEEEEcccchhhHHhhhccCCcEEEEeC
Q 035724 208 TLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFT-KASLIFCTASSSYKLHRVAMEQLKFLVIDE 286 (1939)
Q Consensus 208 ~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~-~a~vI~~T~sss~~l~~l~~~~fdvVIIDE 286 (1939)
..|.....++..+ .....+|+||||+||||++..+...+.. ..+++..+....... .+ ...++++||||
T Consensus 22 g~n~~~~~~l~~~--------~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-~~-~~~~~lLilDE 91 (149)
T 2kjq_A 22 TENAELVYVLRHK--------HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-DA-AFEAEYLAVDQ 91 (149)
T ss_dssp CCTHHHHHHCCCC--------CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-GG-GGGCSEEEEES
T ss_pred CccHHHHHHHHhc--------CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-HH-HhCCCEEEEeC
Confidence 5676665555444 2567899999999999999999866543 233555443221110 11 23579999999
Q ss_pred Ccccch
Q 035724 287 AAQLKE 292 (1939)
Q Consensus 287 ASQ~~E 292 (1939)
...+..
T Consensus 92 ~~~~~~ 97 (149)
T 2kjq_A 92 VEKLGN 97 (149)
T ss_dssp TTCCCS
T ss_pred ccccCh
Confidence 988754
No 150
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=96.71 E-value=0.035 Score=61.82 Aligned_cols=66 Identities=12% Similarity=0.112 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHH
Q 035724 1063 SSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAK 1142 (1939)
Q Consensus 1063 StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAae 1142 (1939)
.+++.|..+|..++..|+|++|+.+|.++-.... .++. ....+...|..|.+.|++++|++
T Consensus 2 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p------------------~~~~-~~~a~~~lg~~~~~~~~~~~A~~ 62 (225)
T 2yhc_A 2 NPPNEIYATAQQKLQDGNWRQAITQLEALDNRYP------------------FGPY-SQQVQLDLIYAYYKNADLPLAQA 62 (225)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------------------TSTT-HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------------------CChH-HHHHHHHHHHHHHhcCCHHHHHH
Confidence 4688999999999999999999999997632000 0011 22345567788888888888887
Q ss_pred HHHHh
Q 035724 1143 CFYNL 1147 (1939)
Q Consensus 1143 cy~ka 1147 (1939)
+|.++
T Consensus 63 ~~~~~ 67 (225)
T 2yhc_A 63 AIDRF 67 (225)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
No 151
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=96.70 E-value=0.0018 Score=74.02 Aligned_cols=34 Identities=24% Similarity=0.108 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTV 247 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti 247 (1939)
..+++.|.+|+..++.. .-.++.+|+|||||.+.
T Consensus 50 ~~~~~~Q~~~i~~~~~g-------~~~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 50 TEPTAIQAQGWPVALSG-------LDMVGVAQTGSGKTLSY 83 (242)
T ss_dssp CSCCHHHHHHHHHHHHT-------CCEEEEECTTSCHHHHH
T ss_pred CCCCHHHHHHHHHHhCC-------CCEEEECCCcCHHHHHH
Confidence 45899999999999873 34599999999999874
No 152
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=96.69 E-value=0.054 Score=60.84 Aligned_cols=126 Identities=15% Similarity=0.156 Sum_probs=67.6
Q ss_pred CCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcc--hHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHc-CCHHH
Q 035724 1063 SSPEEWKSRGIKLFHEHNYDMATICFEKAKDSY--WEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAI-GKADS 1139 (1939)
Q Consensus 1063 StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~--~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~-G~~~k 1139 (1939)
..+.-|..+|..++..++|++|+.+|.++-... ......++....... ....+...+...|.+|.++.... .-+..
T Consensus 35 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 113 (272)
T 3u4t_A 35 NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL-MKKGQDSLAIQQYQAAVDRDTTRLDMYGQ 113 (272)
T ss_dssp CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH-HHcccHHHHHHHHHHHHhcCcccHHHHHH
Confidence 445678899999999999999999999874311 000011111100000 00111222222222222221111 01223
Q ss_pred HHHHHHHhCCHHHHHHHHHHhcC-----hHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 035724 1140 AAKCFYNLGEYERAGRIYLERRE-----EPELEKAGECFFLAGCYKLAADVYAKG 1189 (1939)
Q Consensus 1140 Aaecy~kag~~~~A~eLY~e~~~-----e~~~~qaAe~fE~~G~y~eAAelY~ka 1189 (1939)
-+.+|...|++++|.+.|.+... ...+...|......+++++|.++|.++
T Consensus 114 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 168 (272)
T 3u4t_A 114 IGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKV 168 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777888777776532 233666774444556999999999887
No 153
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.67 E-value=0.0029 Score=74.75 Aligned_cols=99 Identities=19% Similarity=0.247 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcC---CcEEEEcccchhh-------HHh------
Q 035724 210 NDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTK---ASLIFCTASSSYK-------LHR------ 273 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~---a~vI~~T~sss~~-------l~~------ 273 (1939)
.+...+.+...+... ..+..+|+||||||||+++..+.+.+... ..++...++.... ...
T Consensus 30 ~~~~~~~l~~~l~~~----~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (327)
T 1iqp_A 30 QEHIVKRLKHYVKTG----SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKP 105 (327)
T ss_dssp CHHHHHHHHHHHHHT----CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHcC----CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHHHHHHhhCC
Confidence 466666777776632 12347999999999999999998765322 1233222221110 011
Q ss_pred hhccCCcEEEEeCCcccchH--Hhhcccc--CCCcceEEEEec
Q 035724 274 VAMEQLKFLVIDEAAQLKEV--ESAIPLK--LPGIQHAILIGD 312 (1939)
Q Consensus 274 l~~~~fdvVIIDEASQ~~E~--e~lipL~--~~~~~rlVLiGD 312 (1939)
+......+|||||+..++.. ..+..+. .+...++|++++
T Consensus 106 ~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~ 148 (327)
T 1iqp_A 106 IGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCN 148 (327)
T ss_dssp GGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 01145789999999988754 2232221 123446666654
No 154
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.66 E-value=0.0019 Score=76.15 Aligned_cols=61 Identities=28% Similarity=0.242 Sum_probs=39.8
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHhc-----CCcEEEEcccchh---------hH-HhhhccCCcEEEEeCCccc
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCFT-----KASLIFCTASSSY---------KL-HRVAMEQLKFLVIDEAAQL 290 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l~-----~a~vI~~T~sss~---------~l-~~l~~~~fdvVIIDEASQ~ 290 (1939)
....+|+||||||||+++..+.+.+.. ...++.+++.... .. ..+......+|+|||+..+
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l 142 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAMGGVLFIDEAYYL 142 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHHTTSEEEEETGGGS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhcCCCEEEEEChhhh
Confidence 345799999999999999988866633 3355655432210 01 1122235679999999876
No 155
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=96.65 E-value=0.0016 Score=78.79 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLL 251 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li 251 (1939)
..+++.|++|+..++.. .+.-.+|.+|+|+|||.+....+
T Consensus 26 ~~~~~~Q~~~i~~~~~~-----~~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 26 QKPSKIQERALPLLLHN-----PPRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp CSCCHHHHHHHHHHHCS-----SCCCEEEECCTTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcC-----CCCeEEEECCCCCcHHHHHHHHH
Confidence 46899999999999873 12456999999999998764433
No 156
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=96.64 E-value=0.0024 Score=72.37 Aligned_cols=33 Identities=21% Similarity=0.089 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHH
Q 035724 208 TLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTV 247 (1939)
Q Consensus 208 ~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti 247 (1939)
.+++.|.+|+..++.. .-.++.+|.|+|||.+.
T Consensus 46 ~~~~~Q~~~i~~~~~~-------~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRCG-------LDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp SCCHHHHHHHHHHHTT-------CCEEEECCTTSSHHHHH
T ss_pred CCCHHHHHHHHHHhCC-------CCEEEECCCCCcHHHHH
Confidence 5899999999998873 23599999999999874
No 157
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=96.62 E-value=0.041 Score=64.39 Aligned_cols=99 Identities=16% Similarity=0.071 Sum_probs=68.4
Q ss_pred cCCHHHHHHHHHHHHH-------hhCH-------HHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHH
Q 035724 1062 ASSPEEWKSRGIKLFH-------EHNY-------DMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREA 1127 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~-------q~~y-------d~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eA 1127 (1939)
..+++.|...|..+.. .|++ ++|+.+|++|-.. .+|. ....|...
T Consensus 47 p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~--------------------~~p~-~~~~~~~~ 105 (308)
T 2ond_A 47 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST--------------------LLKK-NMLLYFAY 105 (308)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT--------------------TTTT-CHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH--------------------hCcc-cHHHHHHH
Confidence 6789999999998875 3665 7888888876320 0122 23356778
Q ss_pred HHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChH-HHHHHHHHHHHcCCHHHHHHHHHHc
Q 035724 1128 AKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEP-ELEKAGECFFLAGCYKLAADVYAKG 1189 (1939)
Q Consensus 1128 A~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~-~~~qaAe~fE~~G~y~eAAelY~ka 1189 (1939)
+.++++.|++++|.++|.++-...- .... .+...|.++...|++++|.++|.++
T Consensus 106 ~~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 106 ADYEESRMKYEKVHSIYNRLLAIED--------IDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSSS--------SCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHhccc--------cCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 8888888888888887766532110 0112 4667788888888888888888876
No 158
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.62 E-value=0.0033 Score=75.64 Aligned_cols=109 Identities=20% Similarity=0.280 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCC---cEEEEcccc---hhhHH----hhh----
Q 035724 210 NDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTKA---SLIFCTASS---SYKLH----RVA---- 275 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a---~vI~~T~ss---s~~l~----~l~---- 275 (1939)
++...+.+...+.. +..++ .+++|||||||||++..+.+.+.... .++....+. ..... ...
T Consensus 30 ~~~~~~~L~~~i~~---g~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~~~~ 105 (340)
T 1sxj_C 30 QNEVITTVRKFVDE---GKLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQ 105 (340)
T ss_dssp CHHHHHHHHHHHHT---TCCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHHBCC
T ss_pred cHHHHHHHHHHHhc---CCCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHhhcc
Confidence 34445555555552 12223 79999999999999999987654321 233332221 11110 011
Q ss_pred --ccCCcEEEEeCCcccchH--Hhhcccc--CCCcceEEEEecc-ccCCcceec
Q 035724 276 --MEQLKFLVIDEAAQLKEV--ESAIPLK--LPGIQHAILIGDE-CQLPAMVES 322 (1939)
Q Consensus 276 --~~~fdvVIIDEASQ~~E~--e~lipL~--~~~~~rlVLiGD~-~QLpPvV~s 322 (1939)
...++++||||+..++.. ..+.... .+...++|++.+. ..+.|.+.+
T Consensus 106 ~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~s 159 (340)
T 1sxj_C 106 IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLS 159 (340)
T ss_dssp SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT
T ss_pred cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHh
Confidence 124799999999988754 2222221 1234567776643 345555444
No 159
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=96.61 E-value=0.0017 Score=74.07 Aligned_cols=34 Identities=29% Similarity=0.281 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTV 247 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti 247 (1939)
..+++.|++|+..++.. .. .++.+|+|+|||.+.
T Consensus 50 ~~~~~~Q~~~i~~~~~~------~~-~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 50 QMPTPIQMQAIPVMLHG------RE-LLASAPTGSGKTLAF 83 (245)
T ss_dssp CSCCHHHHHHHHHHHTT------CC-EEEECCTTSCHHHHH
T ss_pred CCCCHHHHHHHHHHhCC------CC-EEEECCCCCcHHHHH
Confidence 35899999999999873 23 699999999999864
No 160
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.58 E-value=0.41 Score=50.98 Aligned_cols=178 Identities=13% Similarity=0.063 Sum_probs=91.7
Q ss_pred HHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHH
Q 035724 1075 LFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCFYNLGEYERAG 1154 (1939)
Q Consensus 1075 l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~ 1154 (1939)
++..|+|++|.+.++.... ++......+...+..|...|++++|.++|.++ .
T Consensus 2 ~~~~g~~~~A~~~~~~~~~----------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a------l 53 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA----------------------HPATASGARFMLGYVYAFMDRFDEARASFQAL------Q 53 (203)
T ss_dssp -----CHHHHHHHHHHHHT----------------------STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH------H
T ss_pred ccccccHHHHHHHHHHhcC----------------------ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH------H
Confidence 4567889998885443200 11112234567788888888888887776544 3
Q ss_pred HHHHHhcCh----HHHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHHHHHhcC-ChHHHHHHHHhhhhcccccccccccc
Q 035724 1155 RIYLERREE----PELEKAGECFFLAGCYKLAADVYAKGKFFSECLAVCSKGK-LFEIGLQYMNHWKQHADTDVEHAGTD 1229 (1939)
Q Consensus 1155 eLY~e~~~e----~~~~qaAe~fE~~G~y~eAAelY~kagd~dkAI~my~k~k-~fd~airLv~q~~d~l~~~~~~~~~~ 1229 (1939)
+++.+.... ..+...|..+...|++++|.++|.+ |++++.+.+ ....
T Consensus 54 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~---------------------- 105 (203)
T 3gw4_A 54 QQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLE------ERELLASLPEDPLA---------------------- 105 (203)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH------HHHHHHHSCCCHHH----------------------
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHcCccHHH----------------------
Confidence 333331111 1144556666667777666666543 333333322 1100
Q ss_pred hhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHHhhcCH-------HHHHHHHHhcCCHHHH
Q 035724 1230 VGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRSVDLMRKFLKSLSCF-------DDLLVLEEESGNFMDA 1302 (1939)
Q Consensus 1230 ~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s~eeA~~~L~k~~~l-------dea~ell~e~G~feEA 1302 (1939)
....+...+..|...|++++|.+++... .+.....+.. .....++...|++++|
T Consensus 106 -------------~~~~~~~lg~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 166 (203)
T 3gw4_A 106 -------------ASANAYEVATVALHFGDLAGARQEYEKS------LVYAQQADDQVAIACAFRGLGDLAQQEKNLLEA 166 (203)
T ss_dssp -------------HHHHHHHHHHHHHHHTCHHHHHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred -------------HHHHHHHHHHHHHHhCCHHHHHHHHHHH------HHHHHhccchHHHHHHHHHHHHHHHHCcCHHHH
Confidence 0001112255677778888777765532 1112222222 2344666777888877
Q ss_pred HHHHHHcCCHHHHHHHHHHhCCHHHHHHHHH
Q 035724 1303 ANIARLRGDIFLAVDLLQKAGCFKEACNVTL 1333 (1939)
Q Consensus 1303 a~Lak~~Gk~~eAi~my~kAG~~~eA~rva~ 1333 (1939)
...++ +|.+++.+.|+.....++..
T Consensus 167 ~~~~~------~al~~~~~~~~~~~~~~~~~ 191 (203)
T 3gw4_A 167 QQHWL------RARDIFAELEDSEAVNELMT 191 (203)
T ss_dssp HHHHH------HHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHH------HHHHHHHHcCCHHHHHHHHh
Confidence 66543 56777777776666555544
No 161
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.58 E-value=0.0021 Score=77.63 Aligned_cols=43 Identities=21% Similarity=0.165 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHh
Q 035724 210 NDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCF 255 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l 255 (1939)
.+...+.+...+.. ...++..+|+||||||||+++..+.+.+.
T Consensus 21 ~~~~~~~L~~~l~~---~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 21 QEHVLTALANGLSL---GRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CHHHHHHHHHHHHH---TCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHh---CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45555666666653 22345679999999999999998886553
No 162
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=96.57 E-value=0.08 Score=57.07 Aligned_cols=182 Identities=9% Similarity=-0.049 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC--------H
Q 035724 1121 NVNLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF--------F 1192 (1939)
Q Consensus 1121 ~~~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd--------~ 1192 (1939)
...+...+..|...|++++|+++|.++- ++.. .....+...|.++...|++++|.++|.++-. +
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~------~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 79 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDAL------KSDP--KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEIN 79 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHH------HhCc--cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHH
Confidence 3456778888888999999988876542 2210 1123466779999999999999999998732 2
Q ss_pred HHHHHHHHhc-CChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 035724 1193 SECLAVCSKG-KLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFR 1271 (1939)
Q Consensus 1193 dkAI~my~k~-k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~ 1271 (1939)
-....++... +++++|+.+.++..+ .+.. .. ........+..|...|+++.|++++...-
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~--------------~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 140 (225)
T 2vq2_A 80 NNYGWFLCGRLNRPAESMAYFDKALA-DPTY--------------PT----PYIANLNKGICSAKQGQFGLAEAYLKRSL 140 (225)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHT-STTC--------------SC----HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHc-CcCC--------------cc----hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3345577888 999999999885443 1111 00 01122233777899999999998887432
Q ss_pred cHHHHHHHHHhhcCHHHHHHHHHhcCCHHHHHHHHHHc----C--C---HHHHHHHHHHhCCHHHHHHHHHH
Q 035724 1272 SVDLMRKFLKSLSCFDDLLVLEEESGNFMDAANIARLR----G--D---IFLAVDLLQKAGCFKEACNVTLN 1334 (1939)
Q Consensus 1272 s~eeA~~~L~k~~~ldea~ell~e~G~feEAa~Lak~~----G--k---~~eAi~my~kAG~~~eA~rva~~ 1334 (1939)
.... .....+...+..+...|++++|...++.. . . ......++.+.|++++|......
T Consensus 141 ~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 207 (225)
T 2vq2_A 141 AAQP-----QFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQ 207 (225)
T ss_dssp HHST-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhCC-----CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 2110 00111234456777888888887766532 2 2 23456677889999988766654
No 163
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.57 E-value=0.0033 Score=74.17 Aligned_cols=99 Identities=17% Similarity=0.181 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhc---CCcEEEEcccc---hhhHH----hhh----
Q 035724 210 NDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFT---KASLIFCTASS---SYKLH----RVA---- 275 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~---~a~vI~~T~ss---s~~l~----~l~---- 275 (1939)
.+...+.+...+... ..++ .+|+||||||||+++..+.+.+.. ...++...++. ..... .+.
T Consensus 26 ~~~~~~~l~~~l~~~---~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 101 (323)
T 1sxj_B 26 NKETIDRLQQIAKDG---NMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKL 101 (323)
T ss_dssp CTHHHHHHHHHHHSC---CCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHHHBCC
T ss_pred CHHHHHHHHHHHHcC---CCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHHHHHHHhccc
Confidence 445566666666632 2234 799999999999999998876532 22344333221 11111 111
Q ss_pred ---ccCCcEEEEeCCcccchH--Hhhcccc--CCCcceEEEEec
Q 035724 276 ---MEQLKFLVIDEAAQLKEV--ESAIPLK--LPGIQHAILIGD 312 (1939)
Q Consensus 276 ---~~~fdvVIIDEASQ~~E~--e~lipL~--~~~~~rlVLiGD 312 (1939)
..+..+|||||+..++.. ..+..+. .++...+|+++.
T Consensus 102 ~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~ 145 (323)
T 1sxj_B 102 HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACN 145 (323)
T ss_dssp CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEES
T ss_pred cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeC
Confidence 224789999999988754 2232222 123456677664
No 164
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.55 E-value=0.0037 Score=75.15 Aligned_cols=41 Identities=27% Similarity=0.357 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHH-hcccCCCCCcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 210 NDSQAQAVLSCL-RRTHCDHKATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 210 N~sQ~~AV~~~L-~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
++...+++...+ . ....++ .+|+|||||||||++..+...+
T Consensus 19 ~~~~~~~l~~~~~~---~~~~~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 19 NEELTNFLKSLSDQ---PRDLPH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CHHHHHHHHTTTTC---TTCCCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHhh---CCCCCe-EEEECCCCCCHHHHHHHHHHHH
Confidence 444445555444 2 122334 7999999999999999888654
No 165
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=96.55 E-value=0.0015 Score=73.33 Aligned_cols=35 Identities=23% Similarity=0.205 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVS 248 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~ 248 (1939)
..+++.|++|+..++.. .-.++.+|.|+|||.+..
T Consensus 25 ~~~~~~Q~~~i~~~~~~-------~~~lv~a~TGsGKT~~~~ 59 (219)
T 1q0u_A 25 YKPTEIQERIIPGALRG-------ESMVGQSQTGTGKTHAYL 59 (219)
T ss_dssp CSCCHHHHHHHHHHHHT-------CCEEEECCSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCC-------CCEEEECCCCChHHHHHH
Confidence 46899999999999973 335999999999998743
No 166
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.54 E-value=0.0035 Score=75.03 Aligned_cols=84 Identities=18% Similarity=0.161 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHhccc-CCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccc-hhhHHh--hhccCCcEEEEe
Q 035724 210 NDSQAQAVLSCLRRTH-CDHKATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASS-SYKLHR--VAMEQLKFLVID 285 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~~-~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~ss-s~~l~~--l~~~~fdvVIID 285 (1939)
.+...+++...+.... .....+..+|+||||||||+++..+...+-.....+-|.... ...... .......+|+||
T Consensus 34 ~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~lD 113 (338)
T 3pfi_A 34 QESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDLAAILTNLSEGDILFID 113 (338)
T ss_dssp CHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSHHHHHHHHHTCCTTCEEEEE
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccchhHHHHHHHhccCCCEEEEe
Confidence 5566666666665321 111234569999999999999998876643222222222211 111111 123567899999
Q ss_pred CCcccchH
Q 035724 286 EAAQLKEV 293 (1939)
Q Consensus 286 EASQ~~E~ 293 (1939)
|+..++..
T Consensus 114 Ei~~l~~~ 121 (338)
T 3pfi_A 114 EIHRLSPA 121 (338)
T ss_dssp TGGGCCHH
T ss_pred chhhcCHH
Confidence 99988754
No 167
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=96.53 E-value=0.0021 Score=77.76 Aligned_cols=34 Identities=26% Similarity=0.290 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTV 247 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti 247 (1939)
..+++.|++|+..++.. .-.+|.+|+|+|||.+.
T Consensus 42 ~~~~~~Q~~~i~~i~~~-------~~~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIEG-------HDVLAQAQSGTGKTGTF 75 (394)
T ss_dssp CSCCHHHHHHHHHHHHT-------CCEEECCCSSHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCC-------CCEEEECCCCChHHHHH
Confidence 46899999999999883 23699999999999874
No 168
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=96.52 E-value=0.0028 Score=77.23 Aligned_cols=37 Identities=22% Similarity=0.177 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVS 248 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~ 248 (1939)
..+++.|.+|+..++.. .+.-.+|.+|+|+|||.+..
T Consensus 46 ~~~~~~Q~~~i~~~~~~-----~~~~~lv~apTGsGKT~~~~ 82 (412)
T 3fht_A 46 NRPSKIQENALPLMLAE-----PPQNLIAQSQSGTGKTAAFV 82 (412)
T ss_dssp CSCCHHHHHHHHHHHSS-----SCCCEEEECCTTSCHHHHHH
T ss_pred CCCCHHHHHHHHHHhcC-----CCCeEEEECCCCchHHHHHH
Confidence 46899999999999873 12456999999999998753
No 169
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.48 E-value=0.0041 Score=70.91 Aligned_cols=82 Identities=21% Similarity=0.135 Sum_probs=49.6
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHh-cCCcEEEEcccc---h--------------------hhHHh-hh----ccCCc
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCF-TKASLIFCTASS---S--------------------YKLHR-VA----MEQLK 280 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l-~~a~vI~~T~ss---s--------------------~~l~~-l~----~~~fd 280 (1939)
..+.+|.||||+||||++..++..+. ...++++.+..- + ..+.. +. ...+|
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~d 91 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETK 91 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCC
Confidence 57899999999999999987775443 334454442111 0 00000 11 13589
Q ss_pred EEEEeCCcccchHH--hhccccCCCcceEEEEec
Q 035724 281 FLVIDEAAQLKEVE--SAIPLKLPGIQHAILIGD 312 (1939)
Q Consensus 281 vVIIDEASQ~~E~e--~lipL~~~~~~rlVLiGD 312 (1939)
+||||||.-++... .+.-+.. ....+|++|=
T Consensus 92 vViIDEaQ~l~~~~ve~l~~L~~-~gi~Vil~Gl 124 (223)
T 2b8t_A 92 VIGIDEVQFFDDRICEVANILAE-NGFVVIISGL 124 (223)
T ss_dssp EEEECSGGGSCTHHHHHHHHHHH-TTCEEEEECC
T ss_pred EEEEecCccCcHHHHHHHHHHHh-CCCeEEEEec
Confidence 99999998765442 2222222 2468899984
No 170
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.47 E-value=0.0038 Score=75.64 Aligned_cols=45 Identities=18% Similarity=0.178 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 210 NDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
.+.+.+.+...+........++..+|+||||||||+++..+.+.+
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456666666666532122334578999999999999999988665
No 171
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=96.47 E-value=0.0037 Score=77.08 Aligned_cols=37 Identities=27% Similarity=0.201 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLL 251 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li 251 (1939)
..|.+.|++++..++. . -.+|.+|+|+|||.++..++
T Consensus 8 ~~l~~~Q~~~i~~~~~-------~-~~ll~~~tG~GKT~~~~~~~ 44 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKE-------T-NCLIVLPTGLGKTLIAMMIA 44 (494)
T ss_dssp HCCCHHHHHHHHHGGG-------S-CEEEECCTTSCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHhh-------C-CEEEEcCCCCCHHHHHHHHH
Confidence 4689999999999987 2 45999999999999887665
No 172
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.46 E-value=0.003 Score=73.39 Aligned_cols=60 Identities=22% Similarity=0.341 Sum_probs=37.2
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccc-------h---hhHHh----hhccCCcEEEEeCCccc
Q 035724 229 KATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASS-------S---YKLHR----VAMEQLKFLVIDEAAQL 290 (1939)
Q Consensus 229 ~~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~ss-------s---~~l~~----l~~~~fdvVIIDEASQ~ 290 (1939)
.....+|+||||||||+++..+.+.+ +..++...++. . ..... .......+|||||+..+
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~--~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l 136 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEES--NFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERL 136 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHH--TCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHh--CCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhh
Confidence 34567999999999999999888764 23333221111 0 01111 11245789999998665
No 173
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=96.45 E-value=0.0031 Score=76.94 Aligned_cols=36 Identities=28% Similarity=0.438 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSM 249 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~ 249 (1939)
..+++.|++|+..++.. .-.+|.+|.|+|||.+...
T Consensus 61 ~~~~~~Q~~~i~~~~~~-------~~~lv~a~TGsGKT~~~~~ 96 (414)
T 3eiq_A 61 EKPSAIQQRAILPCIKG-------YDVIAQAQSGTGKTATFAI 96 (414)
T ss_dssp CSCCHHHHHHHHHHHTT-------CCEEECCCSCSSSHHHHHH
T ss_pred CCCCHHHHHHhHHHhCC-------CCEEEECCCCCcccHHHHH
Confidence 45899999999999873 2369999999999987543
No 174
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.44 E-value=0.082 Score=61.25 Aligned_cols=128 Identities=11% Similarity=-0.079 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHH
Q 035724 1065 PEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCF 1144 (1939)
Q Consensus 1065 peeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy 1144 (1939)
..+|..++..++.+++|++|+..|.++-..... .. ........+...+.+|...|++++|+++|
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-------~~---------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 138 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-------HP---------EFQQFLQWQYYVAAYVLKKVDYEYCILEL 138 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-------CH---------HHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-------Ch---------hHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 457888999999999999999999865321110 00 00001122344667777888888888877
Q ss_pred HHhCCHHHHHHHHHHhcC----hHHHHHHHHHHHHcCCHHHHHHHHHHccC--------HH-------HHHHHHHhcCCh
Q 035724 1145 YNLGEYERAGRIYLERRE----EPELEKAGECFFLAGCYKLAADVYAKGKF--------FS-------ECLAVCSKGKLF 1205 (1939)
Q Consensus 1145 ~kag~~~~A~eLY~e~~~----e~~~~qaAe~fE~~G~y~eAAelY~kagd--------~d-------kAI~my~k~k~f 1205 (1939)
.++-.. +.+... ...+...|..+...|+|++|.++|.++-+ .. ....+|.+.++|
T Consensus 139 ~~al~~------~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y 212 (293)
T 2qfc_A 139 KKLLNQ------QLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY 212 (293)
T ss_dssp HHHHTT------CCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHH------HhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhH
Confidence 665211 000000 11355678899999999999999988741 11 122366788889
Q ss_pred HHHHHHHHh
Q 035724 1206 EIGLQYMNH 1214 (1939)
Q Consensus 1206 d~airLv~q 1214 (1939)
++|+.+.++
T Consensus 213 ~~Al~~~~k 221 (293)
T 2qfc_A 213 EESLYQVNK 221 (293)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988888874
No 175
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=96.44 E-value=0.0045 Score=70.99 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTV 247 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti 247 (1939)
..+++.|.+|+..++.. .-.++.+|.|||||.+.
T Consensus 44 ~~~~~~Q~~~i~~i~~~-------~~~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 44 QRPTPIQKNAIPAILEH-------RDIMACAQTGSGKTAAF 77 (253)
T ss_dssp CSCCHHHHHHHHHHHTT-------CCEEEECCTTSSHHHHH
T ss_pred CCCCHHHHHHHHHHhCC-------CCEEEECCCCChHHHHH
Confidence 46899999999999873 23599999999999864
No 176
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=96.44 E-value=0.0041 Score=78.86 Aligned_cols=38 Identities=21% Similarity=0.272 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLL 251 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li 251 (1939)
..+.+.|.+|+..++.. .-.+|.+|.|+|||.+....+
T Consensus 3 ~~~~~~Q~~~i~~~~~~-------~~~l~~~~tGsGKT~~~~~~~ 40 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKG-------KNTIICAPTGCGKTFVSLLIC 40 (555)
T ss_dssp CCCCHHHHHHHHHHHTT-------CCEEEECCTTSCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhCC-------CCEEEEeCCCChHHHHHHHHH
Confidence 46899999999999863 336999999999998765444
No 177
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=96.42 E-value=0.0038 Score=76.37 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHH
Q 035724 208 TLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSML 250 (1939)
Q Consensus 208 ~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~l 250 (1939)
.+++.|++|+..++.. .-.++.+|+|||||.+....
T Consensus 59 ~~~~~Q~~ai~~i~~~-------~~~lv~a~TGsGKT~~~~~~ 94 (410)
T 2j0s_A 59 KPSAIQQRAIKQIIKG-------RDVIAQSQSGTGKTATFSIS 94 (410)
T ss_dssp SCCHHHHHHHHHHHTT-------CCEEEECCTTSSHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCC-------CCEEEECCCCCCchHHHHHH
Confidence 5899999999999873 23699999999999765433
No 178
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.39 E-value=0.0028 Score=66.80 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=38.8
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHHhc-CCcE-EEEcccch--hhHHhhhccCCcEEEEeCCcccchH
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFCFT-KASL-IFCTASSS--YKLHRVAMEQLKFLVIDEAAQLKEV 293 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~l~-~a~v-I~~T~sss--~~l~~l~~~~fdvVIIDEASQ~~E~ 293 (1939)
...+|+||||||||+++..+...... ...+ +-|..... .....+....-.+++|||...++..
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~a~~g~l~ldei~~l~~~ 91 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQLNDFIALAQGGTLVLSHPEHLTRE 91 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSSTTTTSCCEEEECCTTTSSCHHHHHHHHTTSCEEEECGGGSCHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHhCCccCCCEEEECCCCCcchhhhcHHHHcCCcEEEEcChHHCCHH
Confidence 34599999999999999888754432 2233 33432211 1111122234468999999998865
No 179
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.38 E-value=0.0035 Score=78.44 Aligned_cols=63 Identities=19% Similarity=0.331 Sum_probs=41.8
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHhc---CCcEEEEcccchhh-HH---------hh--hcc-CCcEEEEeCCcccch
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCFT---KASLIFCTASSSYK-LH---------RV--AME-QLKFLVIDEAAQLKE 292 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l~---~a~vI~~T~sss~~-l~---------~l--~~~-~fdvVIIDEASQ~~E 292 (1939)
.+..+|+|||||||||++..+...+.. ...++..++..... +. .+ ... ..+++||||+..+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~ 208 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIG 208 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSS
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccC
Confidence 356799999999999999988866643 45666554332111 00 00 112 689999999987763
No 180
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.37 E-value=0.0052 Score=72.11 Aligned_cols=80 Identities=26% Similarity=0.312 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHhccc--------CCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccc--------h-hhHH
Q 035724 210 NDSQAQAVLSCLRRTH--------CDHKATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASS--------S-YKLH 272 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~~--------~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~ss--------s-~~l~ 272 (1939)
.+.+++++...+.... ....+...+|+||||||||+++..+...+- ..++...++. . ....
T Consensus 26 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~--~~~~~i~~~~l~~~~~~~~~~~~~ 103 (297)
T 3b9p_A 26 QDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS--ATFLNISAASLTSKYVGDGEKLVR 103 (297)
T ss_dssp CHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT--CEEEEEESTTTSSSSCSCHHHHHH
T ss_pred hHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC--CCeEEeeHHHHhhcccchHHHHHH
Confidence 5667777776653210 011245679999999999999998886652 2333222211 0 0011
Q ss_pred ----hhhccCCcEEEEeCCcccc
Q 035724 273 ----RVAMEQLKFLVIDEAAQLK 291 (1939)
Q Consensus 273 ----~l~~~~fdvVIIDEASQ~~ 291 (1939)
........+|+|||+..+.
T Consensus 104 ~~~~~~~~~~~~vl~iDEid~l~ 126 (297)
T 3b9p_A 104 ALFAVARHMQPSIIFIDEVDSLL 126 (297)
T ss_dssp HHHHHHHHTCSEEEEEETGGGTS
T ss_pred HHHHHHHHcCCcEEEeccHHHhc
Confidence 1123456899999997664
No 181
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=96.36 E-value=0.0047 Score=78.43 Aligned_cols=38 Identities=21% Similarity=0.294 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLL 251 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li 251 (1939)
..+.+.|.+|+..++.. .-.+|.+|.|+|||.+....+
T Consensus 6 ~~~~~~Q~~~i~~~~~~-------~~~l~~~~tGsGKT~~~~~~~ 43 (556)
T 4a2p_A 6 KKARSYQIELAQPAING-------KNALICAPTGSGKTFVSILIC 43 (556)
T ss_dssp --CCHHHHHHHHHHHTT-------CCEEEECCTTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcC-------CCEEEEcCCCChHHHHHHHHH
Confidence 46899999999999873 236999999999998765444
No 182
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.34 E-value=0.0052 Score=74.41 Aligned_cols=55 Identities=25% Similarity=0.305 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHHhcccCCCCCc--EEEEeCCCCCchhHHHHHHHHHHhcC--CcEEEEc
Q 035724 210 NDSQAQAVLSCLRRTHCDHKAT--VELIWGPPGTGKTKTVSMLLDFCFTK--ASLIFCT 264 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~~~~~~~~--v~LI~GPPGTGKTtti~~li~~~l~~--a~vI~~T 264 (1939)
.+.+.+.+...+........+. ..+|.||||||||+++..+...+... ..++...
T Consensus 22 r~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 22 REQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp CHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 4566666666665321112234 78999999999999999998776553 3455443
No 183
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.32 E-value=0.0052 Score=73.65 Aligned_cols=59 Identities=22% Similarity=0.361 Sum_probs=37.6
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccc---------hhhHHh----hhccCCcEEEEeCCccc
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASS---------SYKLHR----VAMEQLKFLVIDEAAQL 290 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~ss---------s~~l~~----l~~~~fdvVIIDEASQ~ 290 (1939)
.-.||+||||||||+++.++...+ ....++...++. ...... .......+|+|||+..+
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~-~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l 117 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA-NNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSL 117 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT-TSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGG
T ss_pred ceEEEECCCCccHHHHHHHHHHHc-CCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHh
Confidence 457999999999999999998766 233443332211 011111 12345689999998865
No 184
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=96.31 E-value=0.047 Score=56.75 Aligned_cols=86 Identities=7% Similarity=0.078 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC--------H
Q 035724 1121 NVNLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF--------F 1192 (1939)
Q Consensus 1121 ~~~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd--------~ 1192 (1939)
...+...+..|...|++++|+++|.++-.... .....+...|.++...|++++|.++|.++-. +
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 79 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADA--------FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVA 79 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--------cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Confidence 34466777777777888888777776543211 1122356678888889999999998887632 1
Q ss_pred HHHHHHHHhcCChHHHHHHHHh
Q 035724 1193 SECLAVCSKGKLFEIGLQYMNH 1214 (1939)
Q Consensus 1193 dkAI~my~k~k~fd~airLv~q 1214 (1939)
-....++...+++++|+.+.++
T Consensus 80 ~~~a~~~~~~~~~~~A~~~~~~ 101 (186)
T 3as5_A 80 TVLGLTYVQVQKYDLAVPLLIK 101 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHH
Confidence 2233455666777777777664
No 185
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=96.28 E-value=0.012 Score=78.68 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=33.4
Q ss_pred CCCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHH
Q 035724 206 SSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLL 251 (1939)
Q Consensus 206 ~~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li 251 (1939)
...|++.|++|+..++....... +.-.+|+||.|+|||.+....+
T Consensus 366 pf~lt~~Q~~ai~~I~~~l~~~~-~~~~Ll~a~TGSGKTlvall~i 410 (780)
T 1gm5_A 366 PFKLTNAQKRAHQEIRNDMISEK-PMNRLLQGDVGSGKTVVAQLAI 410 (780)
T ss_dssp SSCCCHHHHHHHHHHHHHHHSSS-CCCCEEECCSSSSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhccccC-CCcEEEEcCCCCCHHHHHHHHH
Confidence 34899999999999988542211 1235999999999998775443
No 186
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.28 E-value=0.0055 Score=72.63 Aligned_cols=82 Identities=23% Similarity=0.302 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHhccc-CCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccc---hhhHHh-hh--ccCCcEE
Q 035724 210 NDSQAQAVLSCLRRTH-CDHKATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASS---SYKLHR-VA--MEQLKFL 282 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~~-~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~ss---s~~l~~-l~--~~~fdvV 282 (1939)
.+...+.+...+.... ........+|+||||||||+++..+...+- ..++...+.. ...+.. +. .....+|
T Consensus 17 ~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l 94 (324)
T 1hqc_A 17 QERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG--VNLRVTSGPAIEKPGDLAAILANSLEEGDIL 94 (324)
T ss_dssp CHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT--CCEEEECTTTCCSHHHHHHHHTTTCCTTCEE
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC--CCEEEEeccccCChHHHHHHHHHhccCCCEE
Confidence 4555566666554211 011234569999999999999999887653 3343332221 111111 11 2466899
Q ss_pred EEeCCcccchH
Q 035724 283 VIDEAAQLKEV 293 (1939)
Q Consensus 283 IIDEASQ~~E~ 293 (1939)
+|||+..++..
T Consensus 95 ~lDEi~~l~~~ 105 (324)
T 1hqc_A 95 FIDEIHRLSRQ 105 (324)
T ss_dssp EETTTTSCCHH
T ss_pred EEECCcccccc
Confidence 99999988754
No 187
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=96.26 E-value=0.78 Score=54.38 Aligned_cols=184 Identities=8% Similarity=-0.063 Sum_probs=108.0
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHhCCcchH-----HHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCH---HH
Q 035724 1068 WKSRGIKLFHEHNYDMATICFEKAKDSYWE-----GRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKA---DS 1139 (1939)
Q Consensus 1068 W~~lG~~l~~q~~yd~A~kcF~rAgd~~~~-----~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~---~k 1139 (1939)
+..+|..+...|++++|..+|.++-..... ....+....... .....+..++...|.+|.+++.+.+.. ..
T Consensus 56 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~-~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 134 (373)
T 1hz4_A 56 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI-LFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 134 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence 467788888889999999999887431110 001111100000 112234555666677777777665542 11
Q ss_pred ------HHHHHHHhCCHHHHHHHHHHhc---C---h----HHHHHHHHHHHHcCCHHHHHHHHHHccCH---------HH
Q 035724 1140 ------AAKCFYNLGEYERAGRIYLERR---E---E----PELEKAGECFFLAGCYKLAADVYAKGKFF---------SE 1194 (1939)
Q Consensus 1140 ------Aaecy~kag~~~~A~eLY~e~~---~---e----~~~~qaAe~fE~~G~y~eAAelY~kagd~---------dk 1194 (1939)
-+.+|...|++++|.+.+.+.. . . ..+...|..+...|++++|.++|.++-.. -.
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 214 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 214 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHH
Confidence 2456677788888888877641 1 1 12566789999999999999999876322 11
Q ss_pred H------HHHHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 035724 1195 C------LAVCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVK 1268 (1939)
Q Consensus 1195 A------I~my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~ 1268 (1939)
+ +.++...|++++|..++++-.+..... .... ...+...+..|...|++++|.+.+.
T Consensus 215 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~-------~~~~----------~~~~~~la~~~~~~g~~~~A~~~l~ 277 (373)
T 1hz4_A 215 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN-------NHFL----------QGQWRNIARAQILLGEFEPAEIVLE 277 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTT-------CGGG----------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCc-------chhh----------HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 133668899999999887533211100 0000 0011223667888899988887665
Q ss_pred H
Q 035724 1269 S 1269 (1939)
Q Consensus 1269 ~ 1269 (1939)
.
T Consensus 278 ~ 278 (373)
T 1hz4_A 278 E 278 (373)
T ss_dssp H
T ss_pred H
Confidence 3
No 188
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.25 E-value=0.0057 Score=72.04 Aligned_cols=63 Identities=21% Similarity=0.280 Sum_probs=39.8
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHHhcC-CcEEEEcccch------hhH-----------------HhhhccCCcEEEEeC
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFCFTK-ASLIFCTASSS------YKL-----------------HRVAMEQLKFLVIDE 286 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~l~~-a~vI~~T~sss------~~l-----------------~~l~~~~fdvVIIDE 286 (1939)
...+|+||||||||+++..+...+... ..++...++.. ..+ ..+...+..+++|||
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDE 127 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDA 127 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEET
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeC
Confidence 467999999999999999998766443 23433222110 000 011223457999999
Q ss_pred CcccchH
Q 035724 287 AAQLKEV 293 (1939)
Q Consensus 287 ASQ~~E~ 293 (1939)
+..++..
T Consensus 128 i~~l~~~ 134 (311)
T 4fcw_A 128 IEKAHPD 134 (311)
T ss_dssp GGGSCHH
T ss_pred hhhcCHH
Confidence 9888654
No 189
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=96.24 E-value=0.0069 Score=66.47 Aligned_cols=104 Identities=12% Similarity=0.146 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHH-HHHHHHHHh-cCCcEEEEcccchhhH---------------H
Q 035724 210 NDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKT-VSMLLDFCF-TKASLIFCTASSSYKL---------------H 272 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtt-i~~li~~~l-~~a~vI~~T~sss~~l---------------~ 272 (1939)
+..|..|+...+.+. +++.+|+|+.||+||++ +..++...- +..+|.+-+.+...+. +
T Consensus 36 ~~~~~~a~~~l~~s~-----~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~s~~~l~~~~~l~~~t~t~~ 110 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDR-----PSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMNMKQDERLSGELITGR 110 (189)
T ss_dssp HHHHHHHHHHHHHHS-----CCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTHHHHHHSCTTTCSSCSSSTT
T ss_pred CccchhHHHHHhccC-----CceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchHHHHHHHhhcCcCcceeehh
Confidence 578999999999864 78999999999999998 444442222 2334444332221110 0
Q ss_pred hh---h--ccCCcEEEEeCCcccchHHhhccc--cCCCcceEEEEeccccCCc
Q 035724 273 RV---A--MEQLKFLVIDEAAQLKEVESAIPL--KLPGIQHAILIGDECQLPA 318 (1939)
Q Consensus 273 ~l---~--~~~fdvVIIDEASQ~~E~e~lipL--~~~~~~rlVLiGD~~QLpP 318 (1939)
.+ . ..+-+++|||||++++--+.+..+ +.....++||+||..|++-
T Consensus 111 ~ll~~~~~~tp~s~lIVD~AekLS~kE~~~Lld~A~~~naqvvll~~~~RqG~ 163 (189)
T 2l8b_A 111 RQLLEGMAFTPGSTVIVDQGEKLSLKETLTLLDGAARHNVQVLITDSGQRTGT 163 (189)
T ss_dssp TTTTTSCCCCCCCEEEEEESSSHHHHHHHHHHHHHHHTTCCEEEEESSTTTCS
T ss_pred hhhcCCCCCCCCCEEEEechhhcCHHHHHHHHHHHHhcCCEEEEeCCcccccC
Confidence 01 1 135589999999999888776555 3334589999999988764
No 190
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=96.22 E-value=0.0054 Score=74.22 Aligned_cols=36 Identities=17% Similarity=0.190 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSM 249 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~ 249 (1939)
..+.+.|++|+..++.. .-.+|.+|+|+|||.+...
T Consensus 29 ~~~~~~Q~~~i~~~~~~-------~~~lv~a~TGsGKT~~~~~ 64 (391)
T 1xti_A 29 EHPSEVQHECIPQAILG-------MDVLCQAKSGMGKTAVFVL 64 (391)
T ss_dssp CSCCHHHHHHHHHHTTT-------CCEEEECSSCSSHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcC-------CcEEEECCCCCcHHHHHHH
Confidence 35899999999999873 3369999999999986543
No 191
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.22 E-value=0.0054 Score=73.35 Aligned_cols=80 Identities=16% Similarity=0.249 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHhcc--------cCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccch---------hhHH
Q 035724 210 NDSQAQAVLSCLRRT--------HCDHKATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSS---------YKLH 272 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~--------~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss---------~~l~ 272 (1939)
.+.+++++...+... .....+.-.||+||||||||+++.++...+ +..++...++.. ....
T Consensus 23 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~--~~~~~~v~~~~l~~~~~g~~~~~~~ 100 (322)
T 3eie_A 23 LEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA--NSTFFSVSSSDLVSKWMGESEKLVK 100 (322)
T ss_dssp CHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH--TCEEEEEEHHHHHTTTGGGHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH--CCCEEEEchHHHhhcccchHHHHHH
Confidence 556666666665210 011123456999999999999999988765 333443322110 0011
Q ss_pred ----hhhccCCcEEEEeCCcccc
Q 035724 273 ----RVAMEQLKFLVIDEAAQLK 291 (1939)
Q Consensus 273 ----~l~~~~fdvVIIDEASQ~~ 291 (1939)
........+|+|||+..+.
T Consensus 101 ~~f~~a~~~~~~vl~iDEid~l~ 123 (322)
T 3eie_A 101 QLFAMARENKPSIIFIDQVDALT 123 (322)
T ss_dssp HHHHHHHHTSSEEEEEECGGGGS
T ss_pred HHHHHHHhcCCeEEEechhhhhh
Confidence 1123456899999998764
No 192
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.22 E-value=0.0035 Score=74.09 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=21.8
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
+...+++||||||||+++.++.+.+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567999999999999999998776
No 193
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.21 E-value=0.0023 Score=67.49 Aligned_cols=60 Identities=8% Similarity=0.017 Sum_probs=37.7
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccchhh---HHhhhccCCcEEEEeCCcccchH
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSSYK---LHRVAMEQLKFLVIDEAAQLKEV 293 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss~~---l~~l~~~~fdvVIIDEASQ~~E~ 293 (1939)
...+|+||||||||+++..+..... .++...+..... ...+....-.+++|||...++..
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~a~~~~l~lDei~~l~~~ 90 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNGT---PWVSPARVEYLIDMPMELLQKAEGGVLYVGDIAQYSRN 90 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTTS---CEECCSSTTHHHHCHHHHHHHTTTSEEEEEECTTCCHH
T ss_pred CcEEEECCCCccHHHHHHHHHHhCC---CeEEechhhCChHhhhhHHHhCCCCeEEEeChHHCCHH
Confidence 3469999999999999877653322 444433332211 11122233579999999998765
No 194
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=96.17 E-value=0.0065 Score=78.56 Aligned_cols=47 Identities=19% Similarity=0.003 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 206 SSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 206 ~~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
...|.+.|.+||..++..... . ..-.+|.+|+|||||.++..++..+
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~~-~-~~~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVLQ-G-KKRSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHHT-T-CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHhc-C-CCceEEEecCCCChHHHHHHHHHHH
Confidence 357999999999999874321 1 2335899999999999987776443
No 195
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=96.16 E-value=0.0056 Score=76.94 Aligned_cols=37 Identities=22% Similarity=0.177 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVS 248 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~ 248 (1939)
..+++.|.+|+..++.. .+.-.++.||.|+|||....
T Consensus 113 ~~p~~~Q~~ai~~il~~-----~~~~~l~~a~TGsGKT~~~~ 149 (479)
T 3fmp_B 113 NRPSKIQENALPLMLAE-----PPQNLIAQSQSGTGKTAAFV 149 (479)
T ss_dssp CSCCHHHHHHHHHHTSB-----SCCEEEEECCSSSSHHHHHH
T ss_pred CCCCHHHHHHHHHHHcC-----CCCcEEEEcCCCCchhHHHH
Confidence 45788999999999873 13567999999999998743
No 196
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.16 E-value=0.0037 Score=76.98 Aligned_cols=56 Identities=21% Similarity=0.378 Sum_probs=35.6
Q ss_pred EEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccc---------hhhHHh----hhccCCcEEEEeCCccc
Q 035724 233 ELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASS---------SYKLHR----VAMEQLKFLVIDEAAQL 290 (1939)
Q Consensus 233 ~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~ss---------s~~l~~----l~~~~fdvVIIDEASQ~ 290 (1939)
.|++||||||||.++.+++..+- +.++...++. ...+.. .....+.+|+|||+--+
T Consensus 185 vLL~GPPGTGKTllAkAiA~e~~--~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai 253 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARAVAHHTD--CKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSI 253 (405)
T ss_dssp EEEESCSSSSHHHHHHHHHHHHT--CEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCC
T ss_pred eEEeCCCCCCHHHHHHHHHHhhC--CCceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhh
Confidence 59999999999999999987653 3333322211 111111 12345789999998754
No 197
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=96.14 E-value=0.0036 Score=82.95 Aligned_cols=38 Identities=34% Similarity=0.372 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSML 250 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~l 250 (1939)
..|++.|.+|+..++.. +...+|.||+|+|||+.+...
T Consensus 29 ~~l~~~Q~~~i~~~~~~------~~~~lv~apTGsGKT~~~~l~ 66 (715)
T 2va8_A 29 KKLNPPQTEAVKKGLLE------GNRLLLTSPTGSGKTLIAEMG 66 (715)
T ss_dssp CBCCHHHHHHHHTTTTT------TCCEEEECCTTSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcC------CCcEEEEcCCCCcHHHHHHHH
Confidence 37899999999985442 356799999999999987433
No 198
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.11 E-value=0.0086 Score=75.21 Aligned_cols=82 Identities=21% Similarity=0.218 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHhccc-CCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccchh--------hHHh----h--
Q 035724 210 NDSQAQAVLSCLRRTH-CDHKATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSSY--------KLHR----V-- 274 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~~-~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss~--------~l~~----l-- 274 (1939)
.+..++++...+.... +..++.-.|++||||||||+++.++.+.+-....++...++... .+.. .
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~ 121 (456)
T 2c9o_A 42 QENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIG 121 (456)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHHHHHHHHHTEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 4555555554443221 12223457999999999999999998877544555554433211 0111 0
Q ss_pred -hccCCcEEEEeCCcccc
Q 035724 275 -AMEQLKFLVIDEAAQLK 291 (1939)
Q Consensus 275 -~~~~fdvVIIDEASQ~~ 291 (1939)
....+.+|+|||+-.+.
T Consensus 122 ~~~~~~~il~iDEid~l~ 139 (456)
T 2c9o_A 122 LRIKETKEVYEGEVTELT 139 (456)
T ss_dssp EEEEEEEEEEEEEEEEEE
T ss_pred hhhcCCcEEEEechhhcc
Confidence 23456899999987554
No 199
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.07 E-value=0.011 Score=65.92 Aligned_cols=82 Identities=17% Similarity=0.182 Sum_probs=48.7
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHH-hcCCcEEEEcccch------------------------hhHHhhhccCCcEEEE
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFC-FTKASLIFCTASSS------------------------YKLHRVAMEQLKFLVI 284 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~-l~~a~vI~~T~sss------------------------~~l~~l~~~~fdvVII 284 (1939)
..+.++.||+|+||||.+..++..+ .+..+|++.+.... ..+...-...+|+|+|
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~~~dvViI 87 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEEDTEVIAI 87 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCTTCSEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhccCCEEEE
Confidence 4689999999999999998888554 34444444321100 0011011125899999
Q ss_pred eCCcccchHHh--hccccCCCcceEEEEec
Q 035724 285 DEAAQLKEVES--AIPLKLPGIQHAILIGD 312 (1939)
Q Consensus 285 DEASQ~~E~e~--lipL~~~~~~rlVLiGD 312 (1939)
|||.-+++... +--+. +....+|+.|=
T Consensus 88 DEaqfl~~~~v~~l~~l~-~~~~~Vi~~Gl 116 (191)
T 1xx6_A 88 DEVQFFDDEIVEIVNKIA-ESGRRVICAGL 116 (191)
T ss_dssp CSGGGSCTHHHHHHHHHH-HTTCEEEEEEC
T ss_pred ECCCCCCHHHHHHHHHHH-hCCCEEEEEec
Confidence 99988764431 11112 23457888883
No 200
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=96.06 E-value=0.07 Score=62.40 Aligned_cols=144 Identities=8% Similarity=-0.081 Sum_probs=85.0
Q ss_pred cCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcc---hH-HHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCC-
Q 035724 1062 ASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSY---WE-GRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGK- 1136 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~---~~-~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~- 1136 (1939)
...+.-|...|..+...++++.|..+|+++-... .. .|....... ...+.+.+|.+.|.++-.
T Consensus 96 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~------------~~~~~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 96 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFA------------RRAEGIKSGRMIFKKARED 163 (308)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHH------------HHHHCHHHHHHHHHHHHTS
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHH------------HHhcCHHHHHHHHHHHHhc
Confidence 4567799999999999999999999999974321 11 111111110 011222333333333210
Q ss_pred ----H----HHHHHHHHHhCCHHHHHHHHHHhc-----ChHHHHHHHHHHHHcCCHHHHHHHHHHccC------------
Q 035724 1137 ----A----DSAAKCFYNLGEYERAGRIYLERR-----EEPELEKAGECFFLAGCYKLAADVYAKGKF------------ 1191 (1939)
Q Consensus 1137 ----~----~kAaecy~kag~~~~A~eLY~e~~-----~e~~~~qaAe~fE~~G~y~eAAelY~kagd------------ 1191 (1939)
. ..|.-.+...|++++|.++|.+++ ....+...|.++...|++++|..+|.++-.
T Consensus 164 ~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l 243 (308)
T 2ond_A 164 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 243 (308)
T ss_dssp TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 0 011111122466667776666542 224478889999999999999999988722
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhhhh
Q 035724 1192 FSECLAVCSKGKLFEIGLQYMNHWKQ 1217 (1939)
Q Consensus 1192 ~dkAI~my~k~k~fd~airLv~q~~d 1217 (1939)
+..-+..+.+.|++++|..+.++..+
T Consensus 244 ~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 244 WARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22234555667888888877765433
No 201
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.06 E-value=0.021 Score=57.11 Aligned_cols=98 Identities=10% Similarity=0.035 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHH
Q 035724 1065 PEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCF 1144 (1939)
Q Consensus 1065 peeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy 1144 (1939)
.+.|..+|..++..++|++|+.+|.++-.. +|. ....|...|..|.+.|++++|+++|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~---------------------~p~-~~~~~~~~a~~~~~~~~~~~A~~~~ 61 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR---------------------APE-DARGYSNRAAALAKLMSFPEAIADC 61 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---------------------CCC-ChHHHHHHHHHHHHhcCHHHHHHHH
Confidence 568999999999999999999999986221 122 1245677888888999999998877
Q ss_pred HHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccCH
Q 035724 1145 YNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKFF 1192 (1939)
Q Consensus 1145 ~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd~ 1192 (1939)
.++ .++.- .....+...|.++...|++++|.+.|.++-..
T Consensus 62 ~~a------l~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 62 NKA------IEKDP--NFVRAYIRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHH------HHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHH------HHhCC--CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 654 33210 11234667788888888888888887765443
No 202
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=96.05 E-value=0.023 Score=71.37 Aligned_cols=87 Identities=9% Similarity=-0.006 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHcCCH-HHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC-------HH
Q 035724 1122 VNLREAAKIFEAIGKA-DSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF-------FS 1193 (1939)
Q Consensus 1122 ~~y~eAA~lYe~~G~~-~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd-------~d 1193 (1939)
..+...|..|...|++ ++|+++|.++- ++.- .....+...|.++...|+|++|.++|.++-. +.
T Consensus 103 ~~~~~lg~~~~~~g~~~~~A~~~~~~al------~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 174 (474)
T 4abn_A 103 QALMLKGKALNVTPDYSPEAEVLLSKAV------KLEP--ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQ 174 (474)
T ss_dssp HHHHHHHHHHTSSSSCCHHHHHHHHHHH------HHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHH------hhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHH
Confidence 4566778888888888 88888876542 2200 1123477789999999999999999998732 12
Q ss_pred HHHHHHHhc---------CChHHHHHHHHhhh
Q 035724 1194 ECLAVCSKG---------KLFEIGLQYMNHWK 1216 (1939)
Q Consensus 1194 kAI~my~k~---------k~fd~airLv~q~~ 1216 (1939)
....+|... +++++|+...++--
T Consensus 175 ~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al 206 (474)
T 4abn_A 175 NLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAV 206 (474)
T ss_dssp HHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCChhhhhhhHHHHHHHHHHHH
Confidence 223355566 78888888877533
No 203
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=96.05 E-value=0.0052 Score=75.60 Aligned_cols=35 Identities=20% Similarity=0.124 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVS 248 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~ 248 (1939)
..+++.|++|+..++.. .-.++.+|.|||||....
T Consensus 20 ~~~~~~Q~~~i~~i~~~-------~~~lv~apTGsGKT~~~l 54 (414)
T 3oiy_A 20 KDLTGYQRLWAKRIVQG-------KSFTMVAPTGVGKTTFGM 54 (414)
T ss_dssp SCCCHHHHHHHHHHTTT-------CCEECCSCSSSSHHHHHH
T ss_pred CCCCHHHHHHHHHHhcC-------CCEEEEeCCCCCHHHHHH
Confidence 35789999999999873 235999999999998443
No 204
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.05 E-value=0.12 Score=59.85 Aligned_cols=124 Identities=11% Similarity=-0.064 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchH--hHHHHHHHHHHHHHcCCHHHHHHHH
Q 035724 1067 EWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQ--ANVNLREAAKIFEAIGKADSAAKCF 1144 (1939)
Q Consensus 1067 eW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~e--a~~~y~eAA~lYe~~G~~~kAaecy 1144 (1939)
.+...+..++.+++|++|.++|.++-.... ..+.. ....+...+..|...|++++|+++|
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~ 138 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEE------------------YHPEFQQFLQWQYYVAAYVLKKVDYEYCILEL 138 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCC------------------CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhcccc------------------CChHHHHHHHHHHHHHHHHHcccCHHHHHHHH
Confidence 445668889999999999999998744111 00110 1122334556666666777776666
Q ss_pred HHhCCHHHHHHHHHHhcC----hHHHHHHHHHHHHcCCHHHHHHHHHHcc--------CH-------HHHHHHHHhcCCh
Q 035724 1145 YNLGEYERAGRIYLERRE----EPELEKAGECFFLAGCYKLAADVYAKGK--------FF-------SECLAVCSKGKLF 1205 (1939)
Q Consensus 1145 ~kag~~~~A~eLY~e~~~----e~~~~qaAe~fE~~G~y~eAAelY~kag--------d~-------dkAI~my~k~k~f 1205 (1939)
.++-. +..+..+ ...+...|.++...|+|++|.++|.++- +. -....+|.+.++|
T Consensus 139 ~~al~------~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y 212 (293)
T 3u3w_A 139 KKLLN------QQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY 212 (293)
T ss_dssp HHHHH------TCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHH------HhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHH
Confidence 55421 1000000 0124566777777888888877777763 11 1222355667777
Q ss_pred HHHHHHHHh
Q 035724 1206 EIGLQYMNH 1214 (1939)
Q Consensus 1206 d~airLv~q 1214 (1939)
++|+.+.++
T Consensus 213 ~~A~~~~~~ 221 (293)
T 3u3w_A 213 EESLYQVNK 221 (293)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777663
No 205
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.03 E-value=0.0042 Score=77.39 Aligned_cols=80 Identities=20% Similarity=0.216 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHHHhc----c-----cCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccc---------hh
Q 035724 208 TLNDSQAQAVLSCLRR----T-----HCDHKATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASS---------SY 269 (1939)
Q Consensus 208 ~LN~sQ~~AV~~~L~~----~-----~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~ss---------s~ 269 (1939)
.--+.|++.+...+-. . .+-..+.=.|++||||||||.++.+++..+- +.++...++. ..
T Consensus 184 gGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~--~~f~~v~~s~l~~~~vGese~ 261 (434)
T 4b4t_M 184 GGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN--ATFLKLAAPQLVQMYIGEGAK 261 (434)
T ss_dssp CSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT--CEEEEEEGGGGCSSCSSHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhC--CCEEEEehhhhhhcccchHHH
Confidence 3456677766654321 1 0111233459999999999999999987653 3333332211 11
Q ss_pred hHHh----hhccCCcEEEEeCCcc
Q 035724 270 KLHR----VAMEQLKFLVIDEAAQ 289 (1939)
Q Consensus 270 ~l~~----l~~~~fdvVIIDEASQ 289 (1939)
.+.. .....+.+|+|||+--
T Consensus 262 ~ir~lF~~A~~~aP~IifiDEiDa 285 (434)
T 4b4t_M 262 LVRDAFALAKEKAPTIIFIDELDA 285 (434)
T ss_dssp HHHHHHHHHHHHCSEEEEEECTHH
T ss_pred HHHHHHHHHHhcCCeEEeecchhh
Confidence 1111 1234567999999763
No 206
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=96.02 E-value=0.0097 Score=78.26 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLL 251 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li 251 (1939)
..+.+.|.+++..++.. .-.+|.+|.|+|||......+
T Consensus 12 ~~lr~~Q~~~i~~~l~g-------~~~iv~~~TGsGKTl~~~~~i 49 (696)
T 2ykg_A 12 FKPRNYQLELALPAMKG-------KNTIICAPTGCGKTFVSLLIC 49 (696)
T ss_dssp -CCCHHHHHHHHHHHTT-------CCEEEECCTTSSHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHcC-------CCEEEEcCCCchHHHHHHHHH
Confidence 56899999999999873 346999999999999765444
No 207
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.01 E-value=0.0066 Score=71.93 Aligned_cols=60 Identities=23% Similarity=0.381 Sum_probs=37.5
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccchh---------hHH----hhhccCCcEEEEeCCcccc
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSSY---------KLH----RVAMEQLKFLVIDEAAQLK 291 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss~---------~l~----~l~~~~fdvVIIDEASQ~~ 291 (1939)
+...+|+||||||||+++..+...+- ...+...+.... ... ......+.+++|||+..+.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~ 121 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIA 121 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECHHHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEhHHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHh
Confidence 45679999999999999998886652 333333221110 000 1122356899999987654
No 208
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.01 E-value=0.0047 Score=76.99 Aligned_cols=58 Identities=28% Similarity=0.394 Sum_probs=36.5
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccch---------hhHHh----hhccCCcEEEEeCCccc
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSS---------YKLHR----VAMEQLKFLVIDEAAQL 290 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss---------~~l~~----l~~~~fdvVIIDEASQ~ 290 (1939)
.=.|++||||||||.++.+++..+- +.++...++.. ..+.. .....+.+|+|||+-.+
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e~~--~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai 286 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAATIG--ANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAI 286 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT--CEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSS
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC--CCEEEEehhhhccccchHHHHHHHHHHHHHHhcCCceeeeeccccc
Confidence 3359999999999999999987653 33333322211 11111 12346789999998744
No 209
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.99 E-value=0.0046 Score=73.88 Aligned_cols=77 Identities=21% Similarity=0.124 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccc-hhhHHh------------hhcc
Q 035724 211 DSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASS-SYKLHR------------VAME 277 (1939)
Q Consensus 211 ~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~ss-s~~l~~------------l~~~ 277 (1939)
+...+++..++.. ....+++||||||||+++..+...+-.....+-|+... ...+.. ....
T Consensus 33 ~~~~~~l~~~l~~------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~~~~~~g 106 (331)
T 2r44_A 33 KYMINRLLIGICT------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGNFEVKKG 106 (331)
T ss_dssp HHHHHHHHHHHHH------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTEEEEEEC
T ss_pred HHHHHHHHHHHHc------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCCCceEeccC
Confidence 3344555555543 23469999999999999998876553332223332111 011100 0111
Q ss_pred --CCcEEEEeCCcccchH
Q 035724 278 --QLKFLVIDEAAQLKEV 293 (1939)
Q Consensus 278 --~fdvVIIDEASQ~~E~ 293 (1939)
...+++|||+..++..
T Consensus 107 ~l~~~vl~iDEi~~~~~~ 124 (331)
T 2r44_A 107 PVFSNFILADEVNRSPAK 124 (331)
T ss_dssp TTCSSEEEEETGGGSCHH
T ss_pred cccccEEEEEccccCCHH
Confidence 1279999999988765
No 210
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.95 E-value=0.0075 Score=73.27 Aligned_cols=58 Identities=21% Similarity=0.361 Sum_probs=36.9
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccch---------hhHHh----hhccCCcEEEEeCCcccc
Q 035724 232 VELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSS---------YKLHR----VAMEQLKFLVIDEAAQLK 291 (1939)
Q Consensus 232 v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss---------~~l~~----l~~~~fdvVIIDEASQ~~ 291 (1939)
-.||+||||||||+++.++...+ ...++...+... ..... .......+|+|||+..+.
T Consensus 86 ~iLL~GppGtGKT~la~ala~~~--~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~ 156 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATEA--NSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALT 156 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH--TCEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGT
T ss_pred eEEEECCCCCcHHHHHHHHHHHh--CCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhc
Confidence 46999999999999999998766 233433322110 01111 122357899999998764
No 211
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.94 E-value=0.015 Score=71.34 Aligned_cols=79 Identities=24% Similarity=0.262 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHhccc--------CCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccch---------hhHH
Q 035724 210 NDSQAQAVLSCLRRTH--------CDHKATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSS---------YKLH 272 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~~--------~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss---------~~l~ 272 (1939)
.+.+++.+...+.... ......-.||+||||||||+++..+...+ +..++...++.. ....
T Consensus 120 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~--~~~~~~v~~~~l~~~~~g~~~~~~~ 197 (389)
T 3vfd_A 120 QDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES--NATFFNISAASLTSKYVGEGEKLVR 197 (389)
T ss_dssp CHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT--TCEEEEECSCCC-------CHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh--cCcEEEeeHHHhhccccchHHHHHH
Confidence 5566777766662110 01123457999999999999999887654 334443332211 0011
Q ss_pred h----hhccCCcEEEEeCCccc
Q 035724 273 R----VAMEQLKFLVIDEAAQL 290 (1939)
Q Consensus 273 ~----l~~~~fdvVIIDEASQ~ 290 (1939)
. .......+|+|||+..+
T Consensus 198 ~~~~~a~~~~~~il~iDEid~l 219 (389)
T 3vfd_A 198 ALFAVARELQPSIIFIDQVDSL 219 (389)
T ss_dssp HHHHHHHHSSSEEEEEETGGGG
T ss_pred HHHHHHHhcCCeEEEEECchhh
Confidence 1 12345579999999765
No 212
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=95.93 E-value=0.1 Score=63.92 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=17.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHc
Q 035724 1166 LEKAGECFFLAGCYKLAADVYAKG 1189 (1939)
Q Consensus 1166 ~~qaAe~fE~~G~y~eAAelY~ka 1189 (1939)
+...|..+...|++.+|.+.|.++
T Consensus 250 ~~~lg~~~~~~~~~~~A~~~~~~a 273 (472)
T 4g1t_A 250 LRSAAKFYRRKDEPDKAIELLKKA 273 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCchHHHHHHHHHH
Confidence 556677777778888887777776
No 213
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.91 E-value=0.0031 Score=72.88 Aligned_cols=60 Identities=20% Similarity=0.226 Sum_probs=35.5
Q ss_pred EEEeCCCCCchhHHHHHHHHHHhcCCcEEEEccc-------ch----hhHHhhhccCCcEEEEeCCcccch
Q 035724 233 ELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTAS-------SS----YKLHRVAMEQLKFLVIDEAAQLKE 292 (1939)
Q Consensus 233 ~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~s-------ss----~~l~~l~~~~fdvVIIDEASQ~~E 292 (1939)
.+|+||||||||+++..+...+-...-.+-|+.. +. ..........+.+|+|||+..+..
T Consensus 47 vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~ 117 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGK 117 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcc
Confidence 5899999999999999998665322111111100 00 001111223568999999976643
No 214
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=95.89 E-value=0.0053 Score=72.82 Aligned_cols=36 Identities=22% Similarity=0.197 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTV 247 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti 247 (1939)
..+++.|.+|+..++... +.-.++++|.|||||...
T Consensus 113 ~~pt~iQ~~ai~~il~~~-----~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 113 NRPSKIQENALPLMLAEP-----PQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CSCCHHHHHHHHHHTSSS-----CCCEEEECCTTSSHHHHH
T ss_pred CCCCHHHHHHHHHHHcCC-----CCeEEEECCCCCCccHHH
Confidence 467999999999998631 134699999999999764
No 215
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.86 E-value=0.0093 Score=74.72 Aligned_cols=60 Identities=23% Similarity=0.339 Sum_probs=37.1
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccchh------------hHH-hhhccCCcEEEEeCCccc
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSSY------------KLH-RVAMEQLKFLVIDEAAQL 290 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss~------------~l~-~l~~~~fdvVIIDEASQ~ 290 (1939)
+.-.||+||||||||+++.++...+ ....++...++... .+. ......+.+|+|||+..+
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~-~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l 239 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA-NNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSL 239 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC-CSSEEEEECCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc-CCCCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhh
Confidence 3557999999999999999888765 23344433322110 000 112245678999998765
No 216
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.86 E-value=0.008 Score=72.38 Aligned_cols=47 Identities=28% Similarity=0.360 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhc
Q 035724 210 NDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFT 256 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~ 256 (1939)
-+.+.+.+...+........+...+|+||||||||+++..+...+..
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45666777766663211233567899999999999999998866543
No 217
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=95.84 E-value=0.077 Score=65.04 Aligned_cols=120 Identities=10% Similarity=-0.026 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCC-HHHHHHH
Q 035724 1065 PEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGK-ADSAAKC 1143 (1939)
Q Consensus 1065 peeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~-~~kAaec 1143 (1939)
++.|..+|..+...+++++|+.+|.++=.. +|. ....|...+.+|...|+ +++|+++
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l---------------------~P~-~~~a~~~~g~~l~~~g~d~~eAl~~ 154 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL---------------------NAA-NYTVWHFRRVLLKSLQKDLHEEMNY 154 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH---------------------CTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh---------------------Ccc-CHHHHHHHHHHHHHcccCHHHHHHH
Confidence 457899999999999999999999986210 122 12235556666777775 7777666
Q ss_pred HHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC--------HHHHHHHHHhcCChHHHHHHHHh
Q 035724 1144 FYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF--------FSECLAVCSKGKLFEIGLQYMNH 1214 (1939)
Q Consensus 1144 y~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd--------~dkAI~my~k~k~fd~airLv~q 1214 (1939)
|.++ +++-- -....|...|.++...|+|.+|.++|.++=. +-.-..++.+.++|++|+...++
T Consensus 155 ~~~a------l~l~P--~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~ 225 (382)
T 2h6f_A 155 ITAI------IEEQP--KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQ 225 (382)
T ss_dssp HHHH------HHHCT--TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred HHHH------HHHCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 5443 22200 0112355667777777777777777776622 11222345556666666666664
No 218
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=95.83 E-value=0.0089 Score=75.46 Aligned_cols=109 Identities=17% Similarity=0.123 Sum_probs=65.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhc--------------------------
Q 035724 203 PSLSSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFT-------------------------- 256 (1939)
Q Consensus 203 ~~~~~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~-------------------------- 256 (1939)
......|-+.|++||..+...... ..=.++.-|.|+|||.++..++..+..
T Consensus 32 ~~~~~~L~~~Q~~~v~~l~~~~~~---~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qw~~e~~~~ 108 (500)
T 1z63_A 32 YNIKANLRPYQIKGFSWMRFMNKL---GFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLSVLKNWEEELSKF 108 (500)
T ss_dssp CSCSSCCCHHHHHHHHHHHHHHHT---TCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECSTTHHHHHHHHHHH
T ss_pred hhhhccchHHHHHHHHHHHHHhhC---CCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccHHHHHHHHHHHHHH
Confidence 334567999999999876532111 122478899999999998777633221
Q ss_pred -------------------CCcEEEEcccchhhHHhhhccCCcEEEEeCCcccchHH-----hhccccCCCcceEEEEec
Q 035724 257 -------------------KASLIFCTASSSYKLHRVAMEQLKFLVIDEAAQLKEVE-----SAIPLKLPGIQHAILIGD 312 (1939)
Q Consensus 257 -------------------~a~vI~~T~sss~~l~~l~~~~fdvVIIDEASQ~~E~e-----~lipL~~~~~~rlVLiGD 312 (1939)
..+|+++|.........+....+++||||||..+..+. .+..+ ....++.|-|=
T Consensus 109 ~~~~~v~~~~g~~~~~~~~~~~ivi~t~~~l~~~~~l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l--~~~~~l~LTaT 186 (500)
T 1z63_A 109 APHLRFAVFHEDRSKIKLEDYDIILTTYAVLLRDTRLKEVEWKYIVIDEAQNIKNPQTKIFKAVKEL--KSKYRIALTGT 186 (500)
T ss_dssp CTTSCEEECSSSTTSCCGGGSSEEEEEHHHHTTCHHHHTCCEEEEEEETGGGGSCTTSHHHHHHHTS--CEEEEEEECSS
T ss_pred CCCceEEEEecCchhccccCCcEEEeeHHHHhccchhcCCCcCEEEEeCccccCCHhHHHHHHHHhh--ccCcEEEEecC
Confidence 12344433322222222344578999999999986542 12222 23456777776
Q ss_pred cccC
Q 035724 313 ECQL 316 (1939)
Q Consensus 313 ~~QL 316 (1939)
|.|-
T Consensus 187 P~~n 190 (500)
T 1z63_A 187 PIEN 190 (500)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 6553
No 219
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.82 E-value=0.013 Score=67.62 Aligned_cols=63 Identities=25% Similarity=0.185 Sum_probs=38.9
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHHhcC-CcEEEEcccch--hhHH--------------------hhhccCCcEEEEeCC
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFCFTK-ASLIFCTASSS--YKLH--------------------RVAMEQLKFLVIDEA 287 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~l~~-a~vI~~T~sss--~~l~--------------------~l~~~~fdvVIIDEA 287 (1939)
...+|+||||||||+++..+....... ..++...++.. .... .+......+|+|||+
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi 109 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDEL 109 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC---------CCCCHHHHTTTSEEEEESG
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCcccccccccccccchhhhcCCcEEEEech
Confidence 456999999999999998887654432 33443332221 0000 011123579999999
Q ss_pred cccchH
Q 035724 288 AQLKEV 293 (1939)
Q Consensus 288 SQ~~E~ 293 (1939)
..++..
T Consensus 110 ~~l~~~ 115 (265)
T 2bjv_A 110 ATAPMM 115 (265)
T ss_dssp GGSCHH
T ss_pred HhcCHH
Confidence 988764
No 220
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=95.82 E-value=0.041 Score=56.65 Aligned_cols=96 Identities=14% Similarity=0.108 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHH
Q 035724 1064 SPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKC 1143 (1939)
Q Consensus 1064 tpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaec 1143 (1939)
..+.|..+|..++..++|+.|+.+|.++-.. +|. ....+...|..|...|++++|+++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---------------------~~~-~~~~~~~~a~~~~~~~~~~~A~~~ 69 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIEL---------------------NPS-NAIYYGNRSLAYLRTECYGYALGD 69 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------STT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------------------CCC-ChHHHHHHHHHHHHcCCHHHHHHH
Confidence 3568999999999999999999999987321 011 123456777888888888888777
Q ss_pred HHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 035724 1144 FYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKG 1189 (1939)
Q Consensus 1144 y~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~ka 1189 (1939)
|.++- ++.- .....+...|.++...|++++|.++|.++
T Consensus 70 ~~~a~------~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 107 (166)
T 1a17_A 70 ATRAI------ELDK--KYIKGYYRRAASNMALGKFRAALRDYETV 107 (166)
T ss_dssp HHHHH------HHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHH------HhCc--ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 76543 2210 11234667789999999999999999887
No 221
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=95.80 E-value=0.14 Score=51.64 Aligned_cols=127 Identities=12% Similarity=0.116 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 035724 1067 EWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCFYN 1146 (1939)
Q Consensus 1067 eW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy~k 1146 (1939)
-|..+|..++..++|++|+.+|.++-.. ..... ++......+...+..|...|++++|.++|.+
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~~~-----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 74 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLI-----AKEFG-----------DKAAERIAYSNLGNAYIFLGEFETASEYYKK 74 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HHHHT-----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH-----HHHhC-----------CchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5788899999999999999999987431 11110 1111223456677777777888877776654
Q ss_pred hCCHHHHHHHHHHhcC----hHHHHHHHHHHHHcCCHHHHHHHHHHccCH--------------HHHHHHHHhcCChHHH
Q 035724 1147 LGEYERAGRIYLERRE----EPELEKAGECFFLAGCYKLAADVYAKGKFF--------------SECLAVCSKGKLFEIG 1208 (1939)
Q Consensus 1147 ag~~~~A~eLY~e~~~----e~~~~qaAe~fE~~G~y~eAAelY~kagd~--------------dkAI~my~k~k~fd~a 1208 (1939)
+- +++.+... ...+...|.++...|++++|.++|.++-.. .....++...+++++|
T Consensus 75 a~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 148 (164)
T 3ro3_A 75 TL------LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 148 (164)
T ss_dssp HH------HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HH------HHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHH
Confidence 43 33222111 112445677778888888888777766322 1223355667788888
Q ss_pred HHHHHhh
Q 035724 1209 LQYMNHW 1215 (1939)
Q Consensus 1209 irLv~q~ 1215 (1939)
+...++.
T Consensus 149 ~~~~~~a 155 (164)
T 3ro3_A 149 MHFAEKH 155 (164)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777643
No 222
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=95.79 E-value=0.01 Score=78.04 Aligned_cols=38 Identities=24% Similarity=0.283 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLL 251 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li 251 (1939)
..|.+.|.+|+..++.. .-.+|.+|.|+|||.+....+
T Consensus 6 ~~l~~~Q~~~i~~il~g-------~~~ll~~~TGsGKTl~~~~~i 43 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEG-------KNIIICLPTGCGKTRVAVYIA 43 (699)
T ss_dssp -CCCHHHHHHHHHHHSS-------CCEEECCCTTSCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHhC-------CCEEEEcCCCCcHHHHHHHHH
Confidence 57899999999999972 336999999999998765544
No 223
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.78 E-value=0.01 Score=72.04 Aligned_cols=79 Identities=23% Similarity=0.242 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHhcc----c----CCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccch---------hhHH
Q 035724 210 NDSQAQAVLSCLRRT----H----CDHKATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSS---------YKLH 272 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~----~----~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss---------~~l~ 272 (1939)
.+.+++.+...+... . ....+...||+||||||||+++..+...+ ...++...++.. ....
T Consensus 89 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~--~~~~~~i~~~~l~~~~~g~~~~~~~ 166 (357)
T 3d8b_A 89 VEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS--GATFFSISASSLTSKWVGEGEKMVR 166 (357)
T ss_dssp CHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT--TCEEEEEEGGGGCCSSTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc--CCeEEEEehHHhhccccchHHHHHH
Confidence 455666666655420 0 01224567999999999999999988665 334443332211 0000
Q ss_pred ----hhhccCCcEEEEeCCccc
Q 035724 273 ----RVAMEQLKFLVIDEAAQL 290 (1939)
Q Consensus 273 ----~l~~~~fdvVIIDEASQ~ 290 (1939)
........+|+|||+..+
T Consensus 167 ~~~~~a~~~~~~vl~iDEid~l 188 (357)
T 3d8b_A 167 ALFAVARCQQPAVIFIDEIDSL 188 (357)
T ss_dssp HHHHHHHHTCSEEEEEETHHHH
T ss_pred HHHHHHHhcCCeEEEEeCchhh
Confidence 112245689999998654
No 224
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.78 E-value=0.009 Score=72.85 Aligned_cols=60 Identities=28% Similarity=0.371 Sum_probs=36.5
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccch--h---------hHHh--------hhccCCcEEEEeCCcccc
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSS--Y---------KLHR--------VAMEQLKFLVIDEAAQLK 291 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss--~---------~l~~--------l~~~~fdvVIIDEASQ~~ 291 (1939)
...+|+||||||||+++..+.+.+ ...++.+.+... . .+.. +......+++|||+..+.
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~ 150 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHL--DIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKIS 150 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT--TCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC-
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh--CCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHh
Confidence 456999999999999999888765 233333322110 0 0000 011256899999999876
Q ss_pred h
Q 035724 292 E 292 (1939)
Q Consensus 292 E 292 (1939)
.
T Consensus 151 ~ 151 (376)
T 1um8_A 151 R 151 (376)
T ss_dssp -
T ss_pred h
Confidence 4
No 225
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=95.77 E-value=0.0033 Score=79.97 Aligned_cols=80 Identities=20% Similarity=0.253 Sum_probs=54.4
Q ss_pred CCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHH-HH-----------------------------H---
Q 035724 208 TLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLL-DF-----------------------------C--- 254 (1939)
Q Consensus 208 ~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li-~~-----------------------------~--- 254 (1939)
.+++.|.+|+..++.. ...-.+|.+|.|||||.+....+ .. .
T Consensus 141 ~p~~~Q~~ai~~i~~~-----~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~ 215 (508)
T 3fho_A 141 XXXKIQEKALPLLLSN-----PPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKY 215 (508)
T ss_dssp ECCCTTSSSHHHHHCS-----SCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTT
T ss_pred CcHHHHHHHHHHHHcC-----CCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCc
Confidence 5788999999999873 12456999999999998754332 10 0
Q ss_pred -----------------hcCCcEEEEcccchhhHHh---hhccCCcEEEEeCCcccch
Q 035724 255 -----------------FTKASLIFCTASSSYKLHR---VAMEQLKFLVIDEAAQLKE 292 (1939)
Q Consensus 255 -----------------l~~a~vI~~T~sss~~l~~---l~~~~fdvVIIDEASQ~~E 292 (1939)
...++|+++|......... .....+++||||||..+..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~ 273 (508)
T 3fho_A 216 TEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLD 273 (508)
T ss_dssp SSCCEEC----------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTT
T ss_pred cCeeEEEEeCCcccccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcc
Confidence 0135677777655433222 2345689999999998765
No 226
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.77 E-value=0.0067 Score=75.45 Aligned_cols=55 Identities=29% Similarity=0.423 Sum_probs=34.9
Q ss_pred EEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccc---------hhhHHh----hhccCCcEEEEeCCcc
Q 035724 233 ELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASS---------SYKLHR----VAMEQLKFLVIDEAAQ 289 (1939)
Q Consensus 233 ~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~ss---------s~~l~~----l~~~~fdvVIIDEASQ 289 (1939)
.|++||||||||.++.+++..+- +.++...++. ...+.. .....+.+++|||+-.
T Consensus 209 iLL~GPPGtGKT~lakAiA~~~~--~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~ 276 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLVKAVANSTK--AAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDS 276 (428)
T ss_dssp EEEESCTTTTHHHHHHHHHHHHT--CEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--CCeEEEecchhhccccchhHHHHHHHHHHHHHcCCCeeechhhhh
Confidence 69999999999999999987653 3333332221 111111 1234567899999763
No 227
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=95.77 E-value=0.011 Score=72.11 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTV 247 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti 247 (1939)
..+++.|++|+..++.. .-.++.+|+|||||.+.
T Consensus 36 ~~~~~~Q~~~i~~i~~~-------~~~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 36 TRPTPVQKHAIPIIKEK-------RDLMACAQTGSGKTAAF 69 (417)
T ss_dssp CSCCHHHHHHHHHHHTT-------CCEEEECCTTSCHHHHH
T ss_pred CCCCHHHHHHHHHHccC-------CCEEEEcCCCCHHHHHH
Confidence 46899999999988863 34599999999999753
No 228
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=95.76 E-value=0.056 Score=71.74 Aligned_cols=118 Identities=11% Similarity=-0.003 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC--------HH
Q 035724 1122 VNLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF--------FS 1193 (1939)
Q Consensus 1122 ~~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd--------~d 1193 (1939)
..|...|.+|.+.|++++|+++|.++ .++.- -....+...|..+.+.|++++|.+.|.++-. +-
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kA------l~l~P--~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~ 81 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKA------LEVFP--EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 81 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH------HHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 35678899999999999999888654 33310 1123467779999999999999999988722 12
Q ss_pred HHHHHHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 035724 1194 ECLAVCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVK 1268 (1939)
Q Consensus 1194 kAI~my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~ 1268 (1939)
....+|.+.+++++|+...++--+..+.. ...+..-+..|.+.|++++|+++++
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l~P~~---------------------~~a~~~Lg~~~~~~g~~~eAi~~~~ 135 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQINPAF---------------------ADAHSNLASIHKDSGNIPEAIASYR 135 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------------HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 22335667777887777766422211100 0111122566777777777776555
No 229
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=95.73 E-value=0.3 Score=61.50 Aligned_cols=32 Identities=25% Similarity=0.241 Sum_probs=28.7
Q ss_pred cCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCC
Q 035724 1062 ASSPEEWKSRGIKLFHEHNYDMATICFEKAKD 1093 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd 1093 (1939)
..++.-|...|....+.++++.|.+.|.+|-.
T Consensus 43 P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~ 74 (530)
T 2ooe_A 43 PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM 74 (530)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 46788999999999999999999999999854
No 230
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=95.72 E-value=0.074 Score=58.63 Aligned_cols=127 Identities=12% Similarity=0.013 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC--------HH
Q 035724 1122 VNLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF--------FS 1193 (1939)
Q Consensus 1122 ~~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd--------~d 1193 (1939)
..+...|..|...|++++|+++|.++-.... . .....+-..|.++...|+|++|.+.|.++-. +-
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~------~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 80 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTN------N-QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYI 80 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT------T-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccC------C-CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHH
Confidence 3566778888889999999888776532211 0 1122344579999999999999999998722 23
Q ss_pred HHHHHHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 035724 1194 ECLAVCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKS 1269 (1939)
Q Consensus 1194 kAI~my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~ 1269 (1939)
....+|.+.+++++|+...++.-+..+.. . .........+...+..|...|++++|++.+..
T Consensus 81 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~-------~-------~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 142 (228)
T 4i17_A 81 GKSAAYRDMKNNQEYIATLTEGIKAVPGN-------A-------TIEKLYAIYYLKEGQKFQQAGNIEKAEENYKH 142 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------H-------HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCc-------H-------HHHHHHHHHHHHHhHHHHHhccHHHHHHHHHH
Confidence 34457788999999999988644433321 0 00000111223347788999999999998873
No 231
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=95.71 E-value=0.0067 Score=80.42 Aligned_cols=35 Identities=29% Similarity=0.288 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTV 247 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti 247 (1939)
..|++.|.+|+..++.. +.-.+|.||.|+|||+..
T Consensus 22 ~~l~~~Q~~~i~~~~~~------~~~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 22 ESFYPPQAEALKSGILE------GKNALISIPTASGKTLIA 56 (720)
T ss_dssp CBCCHHHHHHHTTTGGG------TCEEEEECCGGGCHHHHH
T ss_pred CCCCHHHHHHHHHHhcC------CCcEEEEcCCccHHHHHH
Confidence 36899999999984432 356799999999999876
No 232
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=95.69 E-value=0.076 Score=57.58 Aligned_cols=118 Identities=10% Similarity=0.068 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 035724 1067 EWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCFYN 1146 (1939)
Q Consensus 1067 eW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy~k 1146 (1939)
.+..+|..++..++|++|+.+|.++-+. ....+...+..|...|++++|+++|.+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~-------------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~ 62 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDP-------------------------HSRICFNIGCMYTILKNMTEAEKAFTR 62 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSC-------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCC-------------------------ChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4678899999999999999999987321 012456777888888888888877765
Q ss_pred hCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC------------------------HHHHHHHHHhc
Q 035724 1147 LGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF------------------------FSECLAVCSKG 1202 (1939)
Q Consensus 1147 ag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd------------------------~dkAI~my~k~ 1202 (1939)
+- ++.- .....+...|.++...|+|++|.+.|.++-. +-....+|.+.
T Consensus 63 al------~~~~--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 134 (213)
T 1hh8_A 63 SI------NRDK--HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK 134 (213)
T ss_dssp HH------HHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHT
T ss_pred HH------HhCc--cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHc
Confidence 42 2210 1123466778999999999999999988733 22333467788
Q ss_pred CChHHHHHHHHhhhh
Q 035724 1203 KLFEIGLQYMNHWKQ 1217 (1939)
Q Consensus 1203 k~fd~airLv~q~~d 1217 (1939)
+++++|+...++-.+
T Consensus 135 g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 135 EEWKKAEEQLALATS 149 (213)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHH
Confidence 888888888875433
No 233
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.67 E-value=0.0069 Score=74.91 Aligned_cols=58 Identities=21% Similarity=0.299 Sum_probs=35.5
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccc---------hhhHHh----hhccCCcEEEEeCCccc
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASS---------SYKLHR----VAMEQLKFLVIDEAAQL 290 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~ss---------s~~l~~----l~~~~fdvVIIDEASQ~ 290 (1939)
.=.|++||||||||.++.+++..+- +.++...++. ...+.. .....+.+|+|||+-.+
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e~~--~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai 287 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQTS--ATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAI 287 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHHHT--CEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSS
T ss_pred CCCceECCCCchHHHHHHHHHHHhC--CCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhh
Confidence 3369999999999999999986653 2333322211 111111 12345679999998743
No 234
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=95.67 E-value=0.014 Score=78.30 Aligned_cols=39 Identities=21% Similarity=0.299 Sum_probs=30.6
Q ss_pred CCCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHH
Q 035724 206 SSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLL 251 (1939)
Q Consensus 206 ~~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li 251 (1939)
...+.+.|.+|+..++.. .-.+|.+|.|+|||.+....+
T Consensus 246 ~~~l~~~Q~~~i~~~l~~-------~~~ll~~~TGsGKTl~~~~~i 284 (797)
T 4a2q_A 246 TKKARSYQIELAQPAING-------KNALICAPTGSGKTFVSILIC 284 (797)
T ss_dssp --CCCHHHHHHHHHHHTT-------CCEEEECCTTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhC-------CCEEEEeCCCChHHHHHHHHH
Confidence 357899999999999873 236999999999998765444
No 235
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.67 E-value=0.012 Score=70.89 Aligned_cols=82 Identities=20% Similarity=0.242 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhcc-cCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEccc-chhhHHhh--hccCCcEEEEeC
Q 035724 211 DSQAQAVLSCLRRT-HCDHKATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTAS-SSYKLHRV--AMEQLKFLVIDE 286 (1939)
Q Consensus 211 ~sQ~~AV~~~L~~~-~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~s-ss~~l~~l--~~~~fdvVIIDE 286 (1939)
+...+.+...+... ......+..+|+|||||||||++..+...+-......-++.. ....+... .....++++|||
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 44555555555421 001123567999999999999999888665222111111111 11111111 123568999999
Q ss_pred Ccccch
Q 035724 287 AAQLKE 292 (1939)
Q Consensus 287 ASQ~~E 292 (1939)
+..+..
T Consensus 111 ~~~l~~ 116 (334)
T 1in4_A 111 IHRLNK 116 (334)
T ss_dssp GGGCCH
T ss_pred hhhcCH
Confidence 988754
No 236
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=95.62 E-value=0.028 Score=55.48 Aligned_cols=98 Identities=17% Similarity=0.121 Sum_probs=68.0
Q ss_pred cCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHH
Q 035724 1062 ASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAA 1141 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAa 1141 (1939)
..++..|..+|..++..++|+.|+.+|.++-... +. ....+...|..|...|++++|+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---------------------~~-~~~~~~~la~~~~~~~~~~~A~ 70 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN---------------------PK-DAKLYSNRAACYTKLLEFQLAL 70 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC---------------------TT-CHHHHHHHHHHHTTTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------------------CC-cHHHHHHHHHHHHHhccHHHHH
Confidence 4567799999999999999999999999874311 11 1234567788888889999988
Q ss_pred HHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 035724 1142 KCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKG 1189 (1939)
Q Consensus 1142 ecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~ka 1189 (1939)
++|.++- ++.- .....+...|.++...|++++|.++|.++
T Consensus 71 ~~~~~a~------~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 110 (133)
T 2lni_A 71 KDCEECI------QLEP--TFIKGYTRKAAALEAMKDYTKAMDVYQKA 110 (133)
T ss_dssp HHHHHHH------HHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHH------HhCC--CchHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8775543 2210 11233556677777777777777777654
No 237
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.61 E-value=0.014 Score=66.98 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=20.6
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHH
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
.-.+|+||||||||+++..+...+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHc
Confidence 346999999999999999888655
No 238
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.61 E-value=0.023 Score=64.29 Aligned_cols=81 Identities=19% Similarity=0.196 Sum_probs=48.6
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHH-HhcCCcEEEEcccchh------------------------hHHhhhccCCcEEEE
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDF-CFTKASLIFCTASSSY------------------------KLHRVAMEQLKFLVI 284 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~-~l~~a~vI~~T~sss~------------------------~l~~l~~~~fdvVII 284 (1939)
..+.++.||.|+||||.+..++.. .....+|++.+..-.. .+...-..++|+|+|
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~~~~~dvViI 107 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFKHITEEMDVIAI 107 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------CCEEECSSGGGGGGGCCSSCCEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHHHHHHHHhcCCCEEEE
Confidence 468899999999999998777743 3444555554321100 000001125899999
Q ss_pred eCCcccchHHh--hccccCCCcceEEEEe
Q 035724 285 DEAAQLKEVES--AIPLKLPGIQHAILIG 311 (1939)
Q Consensus 285 DEASQ~~E~e~--lipL~~~~~~rlVLiG 311 (1939)
|||.-+++... +--+. +....+|+.|
T Consensus 108 DEaQF~~~~~V~~l~~l~-~~~~~Vi~~G 135 (214)
T 2j9r_A 108 DEVQFFDGDIVEVVQVLA-NRGYRVIVAG 135 (214)
T ss_dssp CCGGGSCTTHHHHHHHHH-HTTCEEEEEE
T ss_pred ECcccCCHHHHHHHHHHh-hCCCEEEEEe
Confidence 99998865432 21112 2346788887
No 239
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=95.61 E-value=0.0037 Score=82.62 Aligned_cols=36 Identities=31% Similarity=0.279 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSM 249 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~ 249 (1939)
..|++.|.+++..++. +.-.+|.||+|+|||+.+..
T Consensus 24 ~~l~~~Q~~~i~~i~~-------~~~~lv~apTGsGKT~~~~l 59 (702)
T 2p6r_A 24 EELFPPQAEAVEKVFS-------GKNLLLAMPTAAGKTLLAEM 59 (702)
T ss_dssp -CCCCCCHHHHHHHTT-------CSCEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC-------CCcEEEEcCCccHHHHHHHH
Confidence 3689999999999665 34569999999999998743
No 240
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.60 E-value=0.055 Score=54.57 Aligned_cols=101 Identities=19% Similarity=0.094 Sum_probs=70.4
Q ss_pred cCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHH
Q 035724 1062 ASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAA 1141 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAa 1141 (1939)
..+...|..+|..++..++|+.|+.+|.++-.... +.......+...+..|...|++++|+
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-------------------~~~~~~~~~~~~a~~~~~~~~~~~A~ 85 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDA-------------------TPQDQAVLHRNRAACHLKLEDYDKAE 85 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCC-------------------CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc-------------------cchHHHHHHHHHHHHHHHHccHHHHH
Confidence 34677999999999999999999999998743211 00112334667788888888888888
Q ss_pred HHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 035724 1142 KCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKG 1189 (1939)
Q Consensus 1142 ecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~ka 1189 (1939)
++|.++- ++.- .....+...|.++...|++++|.++|.++
T Consensus 86 ~~~~~~~------~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 86 TEASKAI------EKDG--GDVKALYRRSQALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp HHHHHHH------HHTS--CCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHH------hhCc--cCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8776542 2210 11233566788888888888888887665
No 241
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.60 E-value=0.0086 Score=76.01 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=20.2
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHH
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
...+|.||||||||+++..+...+
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred CeeEeecCchHHHHHHHHHHHHHH
Confidence 456999999999999998887544
No 242
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.58 E-value=0.017 Score=64.40 Aligned_cols=81 Identities=15% Similarity=0.200 Sum_probs=49.9
Q ss_pred CcEEEEeCCCCCchhHHHHHHH-HHHhcCCcEEEEcccc--------hhhHH------------hh--hccCCcEEEEeC
Q 035724 230 ATVELIWGPPGTGKTKTVSMLL-DFCFTKASLIFCTASS--------SYKLH------------RV--AMEQLKFLVIDE 286 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li-~~~l~~a~vI~~T~ss--------s~~l~------------~l--~~~~fdvVIIDE 286 (1939)
..+.+|.||.|+||||.+...+ +...++.+|++.|+.- +.... .+ .....|+|+|||
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~~~DvIlIDE 99 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDE 99 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHHTCSEEEESS
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhccCCCEEEEEc
Confidence 4689999999999996555555 5566677777765330 00000 00 124579999999
Q ss_pred CcccchH-HhhccccCCCcceEEEEe
Q 035724 287 AAQLKEV-ESAIPLKLPGIQHAILIG 311 (1939)
Q Consensus 287 ASQ~~E~-e~lipL~~~~~~rlVLiG 311 (1939)
|.-+.+- +.+--+. ...+++|+.|
T Consensus 100 aQFfk~~ve~~~~L~-~~gk~VI~~G 124 (195)
T 1w4r_A 100 GQFFPDIVEFCEAMA-NAGKTVIVAA 124 (195)
T ss_dssp GGGCTTHHHHHHHHH-HTTCEEEEEE
T ss_pred hhhhHHHHHHHHHHH-HCCCeEEEEe
Confidence 9988332 2222222 2356888887
No 243
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=95.54 E-value=0.018 Score=71.59 Aligned_cols=34 Identities=15% Similarity=0.079 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTV 247 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti 247 (1939)
..+++.|++|+..+++. .-.++.+|.|||||...
T Consensus 77 ~~pt~iQ~~ai~~i~~g-------~d~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 77 KIPTPIQKCSIPVISSG-------RDLMACAQTGSGKTAAF 110 (434)
T ss_dssp CSCCHHHHHHHHHHHTT-------CCEEEECCTTSSHHHHH
T ss_pred CCCCHHHHHHHHHHhcC-------CCEEEECCCCCCchHHH
Confidence 35799999999999873 34699999999999853
No 244
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=95.52 E-value=0.04 Score=57.90 Aligned_cols=96 Identities=22% Similarity=0.248 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHH
Q 035724 1064 SPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKC 1143 (1939)
Q Consensus 1064 tpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaec 1143 (1939)
+.+.|..+|..++..++|++|+.+|.++-.. +|. ....|...+..|...|++++|+++
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---------------------~p~-~~~~~~~l~~~~~~~g~~~~A~~~ 67 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI---------------------APA-NPIYLSNRAAAYSASGQHEKAAED 67 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------STT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------CCc-CHHHHHHHHHHHHHccCHHHHHHH
Confidence 3568999999999999999999999986321 111 123567788888889999999887
Q ss_pred HHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 035724 1144 FYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKG 1189 (1939)
Q Consensus 1144 y~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~ka 1189 (1939)
|.++ .++.- .....+...|.++...|+|++|.+.|.++
T Consensus 68 ~~~a------l~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 68 AELA------TVVDP--KYSKAWSRLGLARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHH------HHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHH------HHhCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 7654 33310 11234667799999999999999988775
No 245
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=95.51 E-value=0.052 Score=54.46 Aligned_cols=100 Identities=19% Similarity=0.223 Sum_probs=71.3
Q ss_pred cCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHH
Q 035724 1062 ASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAA 1141 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAa 1141 (1939)
..++..|..+|..++..++|++|+.+|.++-.. +|. ....+...+..|...|++++|+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---------------------~~~-~~~~~~~l~~~~~~~~~~~~A~ 63 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR---------------------NPL-VAVYYTNRALCYLKMQQPEQAL 63 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---------------------CcC-cHHHHHHHHHHHHHhcCHHHHH
Confidence 456889999999999999999999999986321 111 1235677788888899999888
Q ss_pred HHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC
Q 035724 1142 KCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF 1191 (1939)
Q Consensus 1142 ecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd 1191 (1939)
++|.++- ++.- .....+...|.++...|++++|.+.|.++-.
T Consensus 64 ~~~~~al------~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 64 ADCRRAL------ELDG--QSVKAHFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHH------HHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHH------HhCc--hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7775543 3210 1123466778888888888888888776543
No 246
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=95.50 E-value=0.54 Score=50.02 Aligned_cols=30 Identities=13% Similarity=0.130 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHhCC
Q 035724 1064 SPEEWKSRGIKLFHEHNYDMATICFEKAKD 1093 (1939)
Q Consensus 1064 tpeeW~~lG~~l~~q~~yd~A~kcF~rAgd 1093 (1939)
...-|..+|..+...++|++|+.+|.++-.
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 54 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQ 54 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 456788999999999999999999998743
No 247
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=95.50 E-value=0.043 Score=57.53 Aligned_cols=96 Identities=16% Similarity=0.096 Sum_probs=69.3
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHH
Q 035724 1064 SPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKC 1143 (1939)
Q Consensus 1064 tpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaec 1143 (1939)
+++.|..+|..++.+++|++|+.+|.++-.. +|. ....+...+..|...|++++|+++
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---------------------~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 77 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---------------------DHY-DSRFFLGLGACRQAMGQYDLAIHS 77 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---------------------Ccc-cHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3557899999999999999999999976210 122 123456778888999999999888
Q ss_pred HHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 035724 1144 FYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKG 1189 (1939)
Q Consensus 1144 y~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~ka 1189 (1939)
|.++ .++.- .....+-..|.++...|++++|.+.|.++
T Consensus 78 ~~~a------l~l~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 78 YSYG------AVMDI--XEPRFPFHAAECLLQXGELAEAESGLFLA 115 (148)
T ss_dssp HHHH------HHHST--TCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHH------HhcCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8654 22210 11234666788899999999998888665
No 248
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.48 E-value=0.018 Score=80.98 Aligned_cols=70 Identities=23% Similarity=0.283 Sum_probs=54.1
Q ss_pred cccCHHHHhhhccCC-cEEEecCCCChHHHHHHHHHHHHhHhhhhhhcccccCCCccccccccccCccCCCCccccccee
Q 035724 717 FEVTDEQLEMILFPK-SSFILGRSGTGKTTILTMKLFQKEKLHHMAMDGFYGVNNSVTLHSSWESGAEEGLGETERPILR 795 (1939)
Q Consensus 717 f~l~~ee~~iI~~p~-~~~vlGrSGTGKTT~~L~kl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 795 (1939)
..+||||.++|..++ +++|.|++||||||+++.|+..+ +..+..+ ...=+
T Consensus 9 ~~~t~eQ~~~i~~~~~~~~v~a~AGSGKT~vl~~ri~~l------l~~~~~~-----------------------~~~~~ 59 (1232)
T 3u4q_A 9 STWTDDQWNAIVSTGQDILVAAAAGSGKTAVLVERMIRK------ITAEENP-----------------------IDVDR 59 (1232)
T ss_dssp -CCCHHHHHHHHCCSSCEEEEECTTCCHHHHHHHHHHHH------HSCSSSC-----------------------CCGGG
T ss_pred CCCCHHHHHHHhCCCCCEEEEecCCCcHHHHHHHHHHHH------HhcCCCC-----------------------CCccc
Confidence 568999999999866 78999999999999999999887 2221100 01123
Q ss_pred EEEEecCHHHHHHHHHHHHH
Q 035724 796 QLFVTVSPKLCFAVKQHISQ 815 (1939)
Q Consensus 796 qvfVT~S~~L~~~vk~~~~~ 815 (1939)
.+.+|.+...|.+.++.+..
T Consensus 60 il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 60 LLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp EEEECSSHHHHHHHHHHHHH
T ss_pred eEEEeccHHHHHHHHHHHHH
Confidence 78999999999998887766
No 249
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.48 E-value=0.0037 Score=77.75 Aligned_cols=71 Identities=15% Similarity=0.214 Sum_probs=51.7
Q ss_pred EEEEcChhHHHHHhhhhCCceEEEEeecccCCCCCEEEEeccCCCCCccccccCCCCCCCCCChhHhhhhhHHHHhhhhe
Q 035724 934 VILVRDDCVRKEISNYVGKQALVLTIVESKGLEFQVIHYTSQCCNSPFKHALFDSTSPGSFPSFNEAKHNVLCSELKQLY 1013 (1939)
Q Consensus 934 ~IlVr~~~~k~~i~~~l~~~~lVmTihesKGLEF~~Vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Elk~LY 1013 (1939)
.||+-+++.|+.+.+. | ..-++|+|++.|+|||.|.++-.... .. + .+......+|
T Consensus 351 ~iLtftq~~k~~L~~~-G-~~~~~Tv~e~QG~tf~~Vtlvr~~~~-----------~~---~--------l~~~~~~~~~ 406 (446)
T 3vkw_A 351 KILTFTQSDKEALLSR-G-YADVHTVHEVQGETYADVSLVRLTPT-----------PV---S--------IIARDSPHVL 406 (446)
T ss_dssp EEEESSHHHHHHHHTT-T-CCSCEETGGGTTCCEEEEEEEECCCS-----------CC---T--------TCSTTCHHHH
T ss_pred eEEEcCHHHHHHHHHh-C-CCCccCHHHcCCcccCeEEEEECCCC-----------Cc---c--------cccCCccceE
Confidence 6889999999988875 3 22279999999999999999743211 00 0 0011245799
Q ss_pred eeeccccceEEEecc
Q 035724 1014 VAITRTRQRLWIWEN 1028 (1939)
Q Consensus 1014 VA~TRAr~~L~I~d~ 1028 (1939)
||+||||++|.++--
T Consensus 407 VALTRh~~~L~~~tv 421 (446)
T 3vkw_A 407 VSLSRHTKSLKYYTV 421 (446)
T ss_dssp HHHSSEEEEEEEEES
T ss_pred EEeecCCCEEEEEEe
Confidence 999999999998764
No 250
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=95.48 E-value=0.044 Score=56.38 Aligned_cols=95 Identities=14% Similarity=0.104 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHH
Q 035724 1065 PEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCF 1144 (1939)
Q Consensus 1065 peeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy 1144 (1939)
++.|..+|..++..++|++|+.+|.++-.. +|. ....|...+..|...|++++|+++|
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---------------------~p~-~~~~~~~lg~~~~~~g~~~~A~~~~ 75 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCML---------------------DHY-DARYFLGLGACRQSLGLYEQALQSY 75 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHh---------------------CCc-cHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 457899999999999999999999875210 122 2234667888899999999998887
Q ss_pred HHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 035724 1145 YNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKG 1189 (1939)
Q Consensus 1145 ~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~ka 1189 (1939)
.++ .++.- .....+-..|.++...|++++|.+.|.++
T Consensus 76 ~~a------l~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 76 SYG------ALMDI--NEPRFPFHAAECHLQLGDLDGAESGFYSA 112 (142)
T ss_dssp HHH------HHHCT--TCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHH------HhcCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 654 33310 11233567788888888888888887665
No 251
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.47 E-value=0.0072 Score=73.41 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=21.2
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
+...+++||||||||+++..+.+.+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3456999999999999999888765
No 252
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=95.47 E-value=0.088 Score=51.27 Aligned_cols=119 Identities=18% Similarity=0.303 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 035724 1066 EEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCFY 1145 (1939)
Q Consensus 1066 eeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy~ 1145 (1939)
+.|..+|..+...+++++|+..|.++-.. .+. ....+...+..|...|++++|.++|.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------------------~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~ 59 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL---------------------DPR-SAEAWYNLGNAYYKQGDYDEAIEYYQ 59 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------------CTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHc---------------------CCc-chhHHHHHHHHHHHhcCHHHHHHHHH
Confidence 35888999999999999999999986210 011 11234556777777788888877766
Q ss_pred HhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC--------HHHHHHHHHhcCChHHHHHHHHh
Q 035724 1146 NLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF--------FSECLAVCSKGKLFEIGLQYMNH 1214 (1939)
Q Consensus 1146 kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd--------~dkAI~my~k~k~fd~airLv~q 1214 (1939)
++- ++.. .....+...|.++...|++++|.++|.++-. +.....++.+.+++++|....++
T Consensus 60 ~~~------~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 60 KAL------ELDP--RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp HHH------HHCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHH------HHCC--CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 542 2210 1122355678888888999999888877522 22334566777888877777663
No 253
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=95.44 E-value=0.064 Score=56.21 Aligned_cols=111 Identities=15% Similarity=0.108 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhh-h-hhcCCchHhHHHHHHHHHHHHHcCCHHHHHH
Q 035724 1065 PEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATAD-R-CRSSNPKQANVNLREAAKIFEAIGKADSAAK 1142 (1939)
Q Consensus 1065 peeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~-~-~~s~~~~ea~~~y~eAA~lYe~~G~~~kAae 1142 (1939)
...|+..|..++..++|++|+.+|.+|-.. ........... . ....++. ....|...|..|.+.|++++|+.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~nla~~~~~~~~~~~A~~ 84 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTR-----LDTLILREKPGEPEWVELDRK-NIPLYANMSQCYLNIGDLHEAEE 84 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HHHHHHTSCTTSHHHHHHHHT-HHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----HHHhcccCCCCHHHHHHHHHH-HHHHHHHHHHHHHhcCcHHHHHH
Confidence 458999999999999999999999987431 00000000000 0 0000011 12345666666777777777766
Q ss_pred HHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 035724 1143 CFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKG 1189 (1939)
Q Consensus 1143 cy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~ka 1189 (1939)
++.++ .++ .-.....+-..|.++...|+|++|.+.|.++
T Consensus 85 ~~~~a------l~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 123 (162)
T 3rkv_A 85 TSSEV------LKR--EETNEKALFRRAKARIAAWKLDEAEEDLKLL 123 (162)
T ss_dssp HHHHH------HHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHH------Hhc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 55443 222 0011234667789999999999999888776
No 254
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=95.44 E-value=0.07 Score=58.80 Aligned_cols=112 Identities=17% Similarity=0.052 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHH
Q 035724 1064 SPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKC 1143 (1939)
Q Consensus 1064 tpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaec 1143 (1939)
+.+.+...|..++..|+|++|+.+|.++-..... ...++...... .............|..|.+.|++++|+++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~-----~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 76 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVD-----KNSEISSKLATELALAYKKNRNYDKAYLF 76 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSC-----TTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhc-----chhhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 5778999999999999999999999987432221 11111111000 01111222344577777788888888777
Q ss_pred HHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 035724 1144 FYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKG 1189 (1939)
Q Consensus 1144 y~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~ka 1189 (1939)
|.++ .++.- -....+...|.++...|++++|.++|.++
T Consensus 77 ~~~a------l~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 114 (208)
T 3urz_A 77 YKEL------LQKAP--NNVDCLEACAEMQVCRGQEKDALRMYEKI 114 (208)
T ss_dssp HHHH------HHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHH------HHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7543 22200 11234667788888889998888888776
No 255
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=95.42 E-value=0.019 Score=73.49 Aligned_cols=35 Identities=23% Similarity=0.232 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKT 246 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtt 246 (1939)
..+++.|.+|+..++... ..-.++.+|.|||||.+
T Consensus 93 ~~~~~~Q~~~i~~~l~~~-----~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 93 PGLTPVQQKTIKPILSSE-----DHDVIARAKTGTGKTFA 127 (563)
T ss_dssp SSCCHHHHHHHHHHHSSS-----SEEEEEECCTTSCHHHH
T ss_pred CCCCHHHHHHHHHHhcCC-----CCeEEEECCCCCCccHH
Confidence 358999999999999421 34569999999999985
No 256
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.40 E-value=0.013 Score=73.27 Aligned_cols=81 Identities=19% Similarity=0.206 Sum_probs=46.7
Q ss_pred CCCHHHHHHHHHHHhc----c-----cCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccc---------hh
Q 035724 208 TLNDSQAQAVLSCLRR----T-----HCDHKATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASS---------SY 269 (1939)
Q Consensus 208 ~LN~sQ~~AV~~~L~~----~-----~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~ss---------s~ 269 (1939)
.--+.|++.+..++.. . .+-..+.=.|++||||||||.++.+++..+- +.++...++. ..
T Consensus 212 gGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~--~~fi~vs~s~L~sk~vGesek 289 (467)
T 4b4t_H 212 GGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD--ATFIRVIGSELVQKYVGEGAR 289 (467)
T ss_dssp TTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT--CEEEEEEGGGGCCCSSSHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC--CCeEEEEhHHhhcccCCHHHH
Confidence 3455677777665432 1 0112234459999999999999999987653 2333322211 11
Q ss_pred hHHh----hhccCCcEEEEeCCccc
Q 035724 270 KLHR----VAMEQLKFLVIDEAAQL 290 (1939)
Q Consensus 270 ~l~~----l~~~~fdvVIIDEASQ~ 290 (1939)
.+.. .....+.+|+|||.-.+
T Consensus 290 ~ir~lF~~Ar~~aP~IIfiDEiDai 314 (467)
T 4b4t_H 290 MVRELFEMARTKKACIIFFDEIDAV 314 (467)
T ss_dssp HHHHHHHHHHHTCSEEEEEECCTTT
T ss_pred HHHHHHHHHHhcCCceEeecccccc
Confidence 1111 12345679999998744
No 257
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=95.40 E-value=0.23 Score=61.87 Aligned_cols=22 Identities=5% Similarity=-0.005 Sum_probs=15.6
Q ss_pred HHHHHHHHhhCHHHHHHHHHHh
Q 035724 1070 SRGIKLFHEHNYDMATICFEKA 1091 (1939)
Q Consensus 1070 ~lG~~l~~q~~yd~A~kcF~rA 1091 (1939)
.+|..+++.+++++|...|+++
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~a 29 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQL 29 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHH
Confidence 3566777777777777777765
No 258
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=95.39 E-value=0.016 Score=79.58 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=32.1
Q ss_pred CCCCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHH
Q 035724 205 LSSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLL 251 (1939)
Q Consensus 205 ~~~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li 251 (1939)
+.+.|++.|.+||..++. ..-.+|.||.|+|||.+....+
T Consensus 36 ~~f~l~~~Q~~aI~~il~-------g~~vlv~apTGsGKTlv~~~~i 75 (997)
T 4a4z_A 36 WPFELDTFQKEAVYHLEQ-------GDSVFVAAHTSAGKTVVAEYAI 75 (997)
T ss_dssp CSSCCCHHHHHHHHHHHT-------TCEEEEECCTTSCSHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHc-------CCCEEEEECCCCcHHHHHHHHH
Confidence 456799999999999987 3457999999999998644333
No 259
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.39 E-value=0.027 Score=70.11 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=26.1
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHh-cCCcEEEE
Q 035724 229 KATVELIWGPPGTGKTKTVSMLLDFCF-TKASLIFC 263 (1939)
Q Consensus 229 ~~~v~LI~GPPGTGKTtti~~li~~~l-~~a~vI~~ 263 (1939)
.+.+.++.||||+|||||+..++..+. ...+|.+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv 131 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLV 131 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 357889999999999999999885443 34455443
No 260
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.36 E-value=0.021 Score=66.66 Aligned_cols=80 Identities=14% Similarity=0.102 Sum_probs=46.0
Q ss_pred CCCCHHHHH-HHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccchhhHHhhhc-cCCcEEEE
Q 035724 207 STLNDSQAQ-AVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSSYKLHRVAM-EQLKFLVI 284 (1939)
Q Consensus 207 ~~LN~sQ~~-AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss~~l~~l~~-~~fdvVII 284 (1939)
.+.|+.+-. ++...+... .....-.+|+||||||||+++.+++..+.....| +.+.+ ...+.. ..-.+++.
T Consensus 82 qg~~~~~~~~~l~~~l~~~--~~~~n~~~l~GppgtGKt~~a~ala~~~~l~G~v---n~~~~--~f~l~~~~~k~i~l~ 154 (267)
T 1u0j_A 82 NGYDPQYAASVFLGWATKK--FGKRNTIWLFGPATTGKTNIAEAIAHTVPFYGCV---NWTNE--NFPFNDCVDKMVIWW 154 (267)
T ss_dssp TTCCHHHHHHHHHHHHTTC--STTCCEEEEECSTTSSHHHHHHHHHHHSSCEEEC---CTTCS--SCTTGGGSSCSEEEE
T ss_pred cCCCHHHHHHHHHHHHhCC--CCCCcEEEEECCCCCCHHHHHHHHHhhhccccee---ecccc--ccccccccccEEEEe
Confidence 457887744 455555532 0223457999999999999999888653211111 11111 111222 23467778
Q ss_pred eCCcccchH
Q 035724 285 DEAAQLKEV 293 (1939)
Q Consensus 285 DEASQ~~E~ 293 (1939)
||+.+..+.
T Consensus 155 Ee~~~~~d~ 163 (267)
T 1u0j_A 155 EEGKMTAKV 163 (267)
T ss_dssp CSCCEETTT
T ss_pred ccccchhHH
Confidence 888877765
No 261
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.33 E-value=0.016 Score=66.01 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=25.0
Q ss_pred EEEeCCCCCchhHHHHHHHHHH-hcCCcEEEEcc
Q 035724 233 ELIWGPPGTGKTKTVSMLLDFC-FTKASLIFCTA 265 (1939)
Q Consensus 233 ~LI~GPPGTGKTtti~~li~~~-l~~a~vI~~T~ 265 (1939)
.++.||||+||||++..+...+ .+..+|+++..
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 5889999999999988777544 44567766543
No 262
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=95.32 E-value=0.046 Score=57.21 Aligned_cols=110 Identities=12% Similarity=0.036 Sum_probs=69.6
Q ss_pred HHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHHHHhCCH
Q 035724 1071 RGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCFYNLGEY 1150 (1939)
Q Consensus 1071 lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy~kag~~ 1150 (1939)
+|..+..+++++.|+.+|+++-... |+ ....+...|.+|.+.|++++|+++|.++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~---------------------p~-~~~~~~~la~~y~~~~~~~~A~~~~~~a--- 57 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP---------------------RQ-KSIKGFYFAKLYYEAKEYDLAKKYICTY--- 57 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH---------------------HH-HHTTHHHHHHHHHHTTCHHHHHHHHHHH---
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC---------------------cc-cHHHHHHHHHHHHHcCCHHHHHHHHHHH---
Confidence 5666667788999999998875421 11 1223456788899999999998887654
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC-----H---HHHHHHHHhcCChHHHHH
Q 035724 1151 ERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF-----F---SECLAVCSKGKLFEIGLQ 1210 (1939)
Q Consensus 1151 ~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd-----~---dkAI~my~k~k~fd~air 1210 (1939)
.++ .--....+...|.++...|++++|.+.|.++-+ . -....+|.+.++++++++
T Consensus 58 ---l~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~ 120 (150)
T 4ga2_A 58 ---INV--QERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAK 120 (150)
T ss_dssp ---HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHH
T ss_pred ---HHh--CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 333 001123477789999999999999999988722 1 222335556666655443
No 263
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=95.31 E-value=0.022 Score=73.51 Aligned_cols=36 Identities=22% Similarity=0.227 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTV 247 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti 247 (1939)
..+++.|.+|+..++... ..-.++.+|.|||||.+.
T Consensus 42 ~~~~~~Q~~~i~~il~~~-----~~dvlv~apTGsGKTl~~ 77 (579)
T 3sqw_A 42 PGLTPVQQKTIKPILSSE-----DHDVIARAKTGTGKTFAF 77 (579)
T ss_dssp SSCCHHHHHHHHHHHCSS-----SEEEEEECCTTSCHHHHH
T ss_pred CCCCHHHHHHHHHHHccC-----CCeEEEEcCCCcHHHHHH
Confidence 358999999999999421 345699999999999853
No 264
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=95.31 E-value=0.022 Score=77.77 Aligned_cols=39 Identities=21% Similarity=0.299 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHH
Q 035724 206 SSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLL 251 (1939)
Q Consensus 206 ~~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li 251 (1939)
...+.+.|.+|+..++.. .-.+|.+|.|+|||.+....+
T Consensus 246 ~~~~r~~Q~~ai~~il~g-------~~~ll~a~TGsGKTl~~~~~i 284 (936)
T 4a2w_A 246 TKKARSYQIELAQPAING-------KNALICAPTGSGKTFVSILIC 284 (936)
T ss_dssp --CCCHHHHHHHHHHHTT-------CCEEEECCTTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcC-------CCEEEEeCCCchHHHHHHHHH
Confidence 357899999999999873 236999999999998765554
No 265
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=95.28 E-value=0.017 Score=79.32 Aligned_cols=80 Identities=19% Similarity=0.220 Sum_probs=53.9
Q ss_pred CCCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHH---------------------------Hh---
Q 035724 206 SSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDF---------------------------CF--- 255 (1939)
Q Consensus 206 ~~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~---------------------------~l--- 255 (1939)
.+.|++.|++|+..++.. .-.+|.+|.|+|||.+....+.. .+
T Consensus 84 ~f~L~~~Q~eai~~l~~g-------~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~v 156 (1010)
T 2xgj_A 84 PFTLDPFQDTAISCIDRG-------ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDV 156 (1010)
T ss_dssp SSCCCHHHHHHHHHHHHT-------CEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCE
T ss_pred CCCCCHHHHHHHHHHHcC-------CCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCE
Confidence 356999999999998873 34699999999999976433310 01
Q ss_pred ----------cCCcEEEEcccchhhHHh---hhccCCcEEEEeCCcccch
Q 035724 256 ----------TKASLIFCTASSSYKLHR---VAMEQLKFLVIDEAAQLKE 292 (1939)
Q Consensus 256 ----------~~a~vI~~T~sss~~l~~---l~~~~fdvVIIDEASQ~~E 292 (1939)
.+++|+++|+........ .....+++||||||..+..
T Consensus 157 glltGd~~~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d 206 (1010)
T 2xgj_A 157 GLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRD 206 (1010)
T ss_dssp EEECSSCEECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGC
T ss_pred EEEeCCCccCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcc
Confidence 135677777543322111 1235679999999998754
No 266
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=95.17 E-value=0.1 Score=51.01 Aligned_cols=97 Identities=22% Similarity=0.303 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHH
Q 035724 1065 PEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCF 1144 (1939)
Q Consensus 1065 peeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy 1144 (1939)
++.|..+|..++..++|+.|+.+|.++-... |. ....+...|..|...|++++|+++|
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---------------------~~-~~~~~~~la~~~~~~~~~~~A~~~~ 61 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD---------------------PT-NMTYITNQAAVYFEKGDYNKCRELC 61 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------TT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---------------------Cc-cHHHHHHHHHHHHHhccHHHHHHHH
Confidence 5678999999999999999999999873210 11 1234567788888899999998887
Q ss_pred HHhCCHHHHHHHHHHhcC-----hHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 035724 1145 YNLGEYERAGRIYLERRE-----EPELEKAGECFFLAGCYKLAADVYAKG 1189 (1939)
Q Consensus 1145 ~kag~~~~A~eLY~e~~~-----e~~~~qaAe~fE~~G~y~eAAelY~ka 1189 (1939)
.++-. +...... ...+...|.++...|++++|.+.|.++
T Consensus 62 ~~~~~------~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 105 (131)
T 1elr_A 62 EKAIE------VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKS 105 (131)
T ss_dssp HHHHH------HHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHh------hccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 66533 2221000 122455677777778887777777654
No 267
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.12 E-value=0.058 Score=64.06 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=20.6
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
....+|+||||||||+++..+....
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEECCCCchHHHHHHHHHHhC
Confidence 3456999999999999998887654
No 268
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=95.12 E-value=0.026 Score=77.31 Aligned_cols=41 Identities=29% Similarity=0.282 Sum_probs=34.1
Q ss_pred CCCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHH
Q 035724 206 SSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLL 251 (1939)
Q Consensus 206 ~~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li 251 (1939)
...|.+.|.+|+..++... ..-.|+.+|.|+|||.++..++
T Consensus 151 ~~~LrpyQ~eav~~~l~~~-----~~~~LLad~tGlGKTi~Ai~~i 191 (968)
T 3dmq_A 151 RTSLIPHQLNIAHDVGRRH-----APRVLLADEVGLGKTIEAGMIL 191 (968)
T ss_dssp SSCCCHHHHHHHHHHHHSS-----SCEEEECCCTTSCHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHhc-----CCCEEEECCCCCcHHHHHHHHH
Confidence 3679999999999998732 3456999999999999887777
No 269
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=95.11 E-value=0.016 Score=80.42 Aligned_cols=82 Identities=17% Similarity=0.172 Sum_probs=54.9
Q ss_pred CCCCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHH---------------------------H---
Q 035724 205 LSSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDF---------------------------C--- 254 (1939)
Q Consensus 205 ~~~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~---------------------------~--- 254 (1939)
....|++.|++|+..++. ..-.+|.||.|+|||.+....+.. .
T Consensus 181 ~~f~ltp~Q~~AI~~i~~-------g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~ 253 (1108)
T 3l9o_A 181 YPFTLDPFQDTAISCIDR-------GESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGD 253 (1108)
T ss_dssp CSSCCCHHHHHHHHHHTT-------TCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSS
T ss_pred CCCCCCHHHHHHHHHHHc-------CCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCC
Confidence 346799999999999876 344699999999999876544410 0
Q ss_pred ----------hcCCcEEEEcccchhhHHhh---hccCCcEEEEeCCcccchH
Q 035724 255 ----------FTKASLIFCTASSSYKLHRV---AMEQLKFLVIDEAAQLKEV 293 (1939)
Q Consensus 255 ----------l~~a~vI~~T~sss~~l~~l---~~~~fdvVIIDEASQ~~E~ 293 (1939)
-.+++|+++|+......... ....+++||||||..+...
T Consensus 254 VglltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~ 305 (1108)
T 3l9o_A 254 VGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDK 305 (1108)
T ss_dssp EEEECSSCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSH
T ss_pred ccEEeCccccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhcccc
Confidence 12356777775433222111 1235799999999988653
No 270
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=95.06 E-value=0.068 Score=51.19 Aligned_cols=96 Identities=17% Similarity=0.193 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHH
Q 035724 1064 SPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKC 1143 (1939)
Q Consensus 1064 tpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaec 1143 (1939)
.++.|..+|..++..++|+.|+.+|.++-.. +|. ....+...+..|...|++++|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---------------------~~~-~~~~~~~~a~~~~~~~~~~~A~~~ 60 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKL---------------------DPH-NHVLYSNRSAAYAKKGDYQKAYED 60 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CTT-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH---------------------CCC-cHHHHHHHHHHHHhhccHHHHHHH
Confidence 3568999999999999999999999986321 011 123456677788888888888777
Q ss_pred HHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 035724 1144 FYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKG 1189 (1939)
Q Consensus 1144 y~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~ka 1189 (1939)
+.++- ++.. .....+...|.++...|++++|.+.|.++
T Consensus 61 ~~~~~------~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 61 GCKTV------DLKP--DWGKGYSRKAAALEFLNRFEEAKRTYEEG 98 (118)
T ss_dssp HHHHH------HHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHH------HhCc--ccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 65432 2210 11233566678888888888888877665
No 271
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.00 E-value=0.034 Score=69.38 Aligned_cols=35 Identities=31% Similarity=0.369 Sum_probs=26.9
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHhc-CCcEEEE
Q 035724 229 KATVELIWGPPGTGKTKTVSMLLDFCFT-KASLIFC 263 (1939)
Q Consensus 229 ~~~v~LI~GPPGTGKTtti~~li~~~l~-~a~vI~~ 263 (1939)
++.+.++.||||+|||||+..++..+.. ..+|++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv 134 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVV 134 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 3578899999999999999999865543 3455544
No 272
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=95.00 E-value=0.64 Score=51.34 Aligned_cols=123 Identities=11% Similarity=-0.002 Sum_probs=77.0
Q ss_pred cCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHH---
Q 035724 1062 ASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKAD--- 1138 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~--- 1138 (1939)
..++..+..+|..++..+++++|+.+|++|-+.....-....+..-. ..-...+...+...|++|++ .|...
T Consensus 15 ~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~-~~g~~~~~~~A~~~~~~A~~----~g~~~a~~ 89 (212)
T 3rjv_A 15 AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKI-RNPQQADYPQARQLAEKAVE----AGSKSGEI 89 (212)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-SSTTSCCHHHHHHHHHHHHH----TTCHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-cCCCCCCHHHHHHHHHHHHH----CCCHHHHH
Confidence 56889999999999999999999999999854322111111111000 00001133334444444432 24332
Q ss_pred HHHHHHHH----hCCHHHHHHHHHHhcCh-------HHHHHHHHHHHH----cCCHHHHHHHHHHc
Q 035724 1139 SAAKCFYN----LGEYERAGRIYLERREE-------PELEKAGECFFL----AGCYKLAADVYAKG 1189 (1939)
Q Consensus 1139 kAaecy~k----ag~~~~A~eLY~e~~~e-------~~~~qaAe~fE~----~G~y~eAAelY~ka 1189 (1939)
.-..+|.. .+++++|.++|.+.+.. ..+...|.++.. .+++.+|.++|.++
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 12355655 67888888888877432 336677888888 88899999999887
No 273
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.00 E-value=0.033 Score=70.29 Aligned_cols=57 Identities=23% Similarity=0.316 Sum_probs=35.9
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccch---------hhHH----hhhccCCcEEEEeCCccc
Q 035724 232 VELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSS---------YKLH----RVAMEQLKFLVIDEAAQL 290 (1939)
Q Consensus 232 v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss---------~~l~----~l~~~~fdvVIIDEASQ~ 290 (1939)
-.+|+||||||||+++..+...+ ...++..+++.. .... ......+.+|+|||+..+
T Consensus 51 gvLL~GppGtGKT~Laraia~~~--~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l 120 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEA--NVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAV 120 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH--TCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGT
T ss_pred eEEEECCCCCCHHHHHHHHHHHc--CCCeeeCCHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhh
Confidence 46999999999999999888654 233443332211 1111 112345789999998755
No 274
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=94.96 E-value=0.043 Score=76.40 Aligned_cols=42 Identities=29% Similarity=0.240 Sum_probs=31.8
Q ss_pred CCCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHH
Q 035724 206 SSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVS 248 (1939)
Q Consensus 206 ~~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~ 248 (1939)
...+++.|.+|+..++..+.. ..+.-.+|+||.|+|||.++.
T Consensus 601 ~~~~t~~Q~~ai~~il~~~~~-g~p~d~ll~~~TGsGKT~val 642 (1151)
T 2eyq_A 601 PFETTPDQAQAINAVLSDMCQ-PLAMDRLVCGDVGFGKTEVAM 642 (1151)
T ss_dssp CSCCCHHHHHHHHHHHHHHHS-SSCCEEEEECCCCTTTHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhc-CCcCcEEEECCCCCCHHHHHH
Confidence 456799999999999984321 112256999999999998764
No 275
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.93 E-value=0.08 Score=66.73 Aligned_cols=41 Identities=29% Similarity=0.433 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHh
Q 035724 211 DSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCF 255 (1939)
Q Consensus 211 ~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l 255 (1939)
+...+.+..++... ..++ .||+||||||||+++..+...+.
T Consensus 186 ~~~i~~l~~~l~r~---~~~~-~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 186 SKEIQRVIEVLSRR---TKNN-PVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp HHHHHHHHHHHHCS---SSCE-EEEESCTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc---CCCC-eEEECCCCCCHHHHHHHHHHHHH
Confidence 45555566666532 2233 49999999999999999887663
No 276
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.90 E-value=0.056 Score=60.29 Aligned_cols=84 Identities=20% Similarity=0.169 Sum_probs=54.5
Q ss_pred CcEEEEeCCCCCchhHHHHHHH-HHHhcCCcEEEEcccch---------h-hH---------------------------
Q 035724 230 ATVELIWGPPGTGKTKTVSMLL-DFCFTKASLIFCTASSS---------Y-KL--------------------------- 271 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li-~~~l~~a~vI~~T~sss---------~-~l--------------------------- 271 (1939)
.+..+|++|+|+||||.+..++ +.+-...+|.+...... . .+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 4678999999999999997776 55555667766622110 0 01
Q ss_pred ------HhhhccCCcEEEEeCC------cccchHHhhccc-cCCCcceEEEEecc
Q 035724 272 ------HRVAMEQLKFLVIDEA------AQLKEVESAIPL-KLPGIQHAILIGDE 313 (1939)
Q Consensus 272 ------~~l~~~~fdvVIIDEA------SQ~~E~e~lipL-~~~~~~rlVLiGD~ 313 (1939)
..+....+|+||+||. +.++..+.+-.+ ..+....+|+-|-.
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ 162 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRG 162 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSS
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCC
Confidence 0012367999999999 455666544333 34566788888853
No 277
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=94.81 E-value=0.14 Score=59.47 Aligned_cols=130 Identities=9% Similarity=-0.014 Sum_probs=76.0
Q ss_pred cCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHH
Q 035724 1062 ASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAA 1141 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAa 1141 (1939)
...++.+..+|..+...|++++|+.+|+++-.. +|.. ...+...|.+|.+.|++++|+
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---------------------~P~~-~~a~~~la~~~~~~g~~~~A~ 171 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL---------------------SNQN-GEIGLLLAETLIALNRSEDAE 171 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------TTSC-HHHHHHHHHHHHHTTCHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---------------------CCcc-hhHHHHHHHHHHHCCCHHHHH
Confidence 345668899999999999999999999986220 1111 123445566666666666666
Q ss_pred HHHHHhC---------------------CHHHHHHHHHHhc-----ChHHHHHHHHHHHHcCCHHHHHHHHHHccC----
Q 035724 1142 KCFYNLG---------------------EYERAGRIYLERR-----EEPELEKAGECFFLAGCYKLAADVYAKGKF---- 1191 (1939)
Q Consensus 1142 ecy~kag---------------------~~~~A~eLY~e~~-----~e~~~~qaAe~fE~~G~y~eAAelY~kagd---- 1191 (1939)
++|.++- ....|.+.|.+.. ....+-..|..+...|++++|.+.|.++=.
T Consensus 172 ~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 172 AVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp HHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence 6665542 2233333333321 112355667777778888888877776511
Q ss_pred ------HHHHHHHHHhcCChHHHHHHHH
Q 035724 1192 ------FSECLAVCSKGKLFEIGLQYMN 1213 (1939)
Q Consensus 1192 ------~dkAI~my~k~k~fd~airLv~ 1213 (1939)
......++...++.++++...+
T Consensus 252 ~~~~~a~~~l~~~~~~~g~~~~a~~~~r 279 (287)
T 3qou_A 252 AADGQTRXTFQEILAALGTGDALASXYR 279 (287)
T ss_dssp GGGGHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccchHHHHHHHHHHHcCCCCcHHHHHH
Confidence 2223345555555555544443
No 278
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=94.72 E-value=0.52 Score=59.37 Aligned_cols=195 Identities=13% Similarity=0.072 Sum_probs=112.5
Q ss_pred cCCHHHHHHHHHHHHH-------hhCHH-------HHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHH
Q 035724 1062 ASSPEEWKSRGIKLFH-------EHNYD-------MATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREA 1127 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~-------q~~yd-------~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eA 1127 (1939)
..+++-|...|..+.. .|+++ +|+.+|++|-.. ..|. ....|...
T Consensus 269 p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~--------------------~~p~-~~~l~~~~ 327 (530)
T 2ooe_A 269 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST--------------------LLKK-NMLLYFAY 327 (530)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT--------------------TCSS-CHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH--------------------hCcc-cHHHHHHH
Confidence 5679999999999987 68877 788888876320 0122 23356777
Q ss_pred HHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcCh-HHHHHHHHHHHHcCCHHHHHHHHHHccC--------H-HHHHH
Q 035724 1128 AKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREE-PELEKAGECFFLAGCYKLAADVYAKGKF--------F-SECLA 1197 (1939)
Q Consensus 1128 A~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e-~~~~qaAe~fE~~G~y~eAAelY~kagd--------~-dkAI~ 1197 (1939)
+.++++.|++++|.++|.++- ++ .-... ..|...|.++...|++++|.++|.++-. + ..|.-
T Consensus 328 ~~~~~~~g~~~~A~~~~~~al------~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~ 399 (530)
T 2ooe_A 328 ADYEESRMKYEKVHSIYNRLL------AI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALM 399 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH------HS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHh------Cc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 888888888888888877642 11 00011 2466778888888899999999988732 1 11222
Q ss_pred HHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHH
Q 035724 1198 VCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRSVDLMR 1277 (1939)
Q Consensus 1198 my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s~eeA~ 1277 (1939)
.+...|++++|..+.++--+..+ . ....+...+..+.+.|+.+.|...+...-.... .
T Consensus 400 ~~~~~~~~~~A~~~~e~al~~~p-----------------~----~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~-~ 457 (530)
T 2ooe_A 400 EYYCSKDKSVAFKIFELGLKKYG-----------------D----IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS-L 457 (530)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHT-----------------T----CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC-S
T ss_pred HHHHcCChhHHHHHHHHHHHHCC-----------------C----CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC-C
Confidence 23357778888777763222111 0 112223335567788888888776653210000 0
Q ss_pred HHHHhhcCHHHHHHHHHhcCCHHHHHHHHH
Q 035724 1278 KFLKSLSCFDDLLVLEEESGNFMDAANIAR 1307 (1939)
Q Consensus 1278 ~~L~k~~~ldea~ell~e~G~feEAa~Lak 1307 (1939)
.--.....+...+++..+.|+.+.|..+.+
T Consensus 458 ~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~ 487 (530)
T 2ooe_A 458 PPEKSGEIWARFLAFESNIGDLASILKVEK 487 (530)
T ss_dssp CGGGCHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 000001123444555556666666655443
No 279
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=94.71 E-value=0.17 Score=64.56 Aligned_cols=123 Identities=9% Similarity=-0.000 Sum_probs=86.4
Q ss_pred cCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHH
Q 035724 1062 ASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAA 1141 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAa 1141 (1939)
...+..|..+|..+...++|++|+.+|+++-... |. ....+...|..|...|++++|+
T Consensus 20 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------------------p~-~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 20 PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH---------------------PG-HPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp -CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS---------------------TT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------CC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 3457789999999999999999999999874311 11 1234567788888899999998
Q ss_pred HHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC--------HHHHHHHHHhc---CChHHHHH
Q 035724 1142 KCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF--------FSECLAVCSKG---KLFEIGLQ 1210 (1939)
Q Consensus 1142 ecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd--------~dkAI~my~k~---k~fd~air 1210 (1939)
++|.++- ++.- .....+...|.++...|++++|.++|.++-+ +.....++.+. +++++|..
T Consensus 78 ~~~~~al------~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~ 149 (568)
T 2vsy_A 78 VLLQQAS------DAAP--EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSA 149 (568)
T ss_dssp HHHHHHH------HHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred HHHHHHH------hcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHH
Confidence 8776543 2210 1123467789999999999999999988722 22233455666 77777777
Q ss_pred HHHh
Q 035724 1211 YMNH 1214 (1939)
Q Consensus 1211 Lv~q 1214 (1939)
..++
T Consensus 150 ~~~~ 153 (568)
T 2vsy_A 150 QVRA 153 (568)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6664
No 280
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=94.66 E-value=0.05 Score=56.99 Aligned_cols=92 Identities=12% Similarity=0.087 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHH
Q 035724 1065 PEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCF 1144 (1939)
Q Consensus 1065 peeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy 1144 (1939)
+..|..+|..++..++|+.|+.+|.++=.. +|. ....|...+.+|...|++++|+++|
T Consensus 31 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~---------------------~p~-~~~a~~~lg~~~~~~~~~~~A~~~~ 88 (150)
T 4ga2_A 31 SIKGFYFAKLYYEAKEYDLAKKYICTYINV---------------------QER-DPKAHRFLGLLYELEENTDKAVECY 88 (150)
T ss_dssp HTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------CCC-CHHHHHHHHHHHHHcCchHHHHHHH
Confidence 346788999999999999999999986210 122 2345678899999999999998887
Q ss_pred HHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHH
Q 035724 1145 YNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVY 1186 (1939)
Q Consensus 1145 ~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY 1186 (1939)
.++ .++-- .....+...|.++.+.|++.+|++.|
T Consensus 89 ~~a------l~~~p--~~~~~~~~la~~~~~~~~~~~aa~~~ 122 (150)
T 4ga2_A 89 RRS------VELNP--TQKDLVLKIAELLCKNDVTDGRAKYW 122 (150)
T ss_dssp HHH------HHHCT--TCHHHHHHHHHHHHHHCSSSSHHHHH
T ss_pred HHH------HHhCC--CCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 654 33300 11234777899999999999988876
No 281
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.63 E-value=0.18 Score=60.94 Aligned_cols=19 Identities=26% Similarity=0.494 Sum_probs=13.8
Q ss_pred HHHHHhCCHHHHHHHHHHh
Q 035724 1142 KCFYNLGEYERAGRIYLER 1160 (1939)
Q Consensus 1142 ecy~kag~~~~A~eLY~e~ 1160 (1939)
+-+.+.|+|++|.+.|.+.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~ 30 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSL 30 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 3456678888888888765
No 282
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.63 E-value=0.029 Score=71.16 Aligned_cols=79 Identities=19% Similarity=0.236 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHhcc---------cCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccch---------hhH
Q 035724 210 NDSQAQAVLSCLRRT---------HCDHKATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSS---------YKL 271 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~---------~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss---------~~l 271 (1939)
.+.|.+.+...+... ..-..+.-.||+||||||||+++.++...+ +..++...+... ...
T Consensus 209 ~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~--~~~fv~vn~~~l~~~~~g~~~~~~ 286 (489)
T 3hu3_A 209 CRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET--GAFFFLINGPEIMSKLAGESESNL 286 (489)
T ss_dssp CHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC--SSEEEEEEHHHHHTSCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh--CCCEEEEEchHhhhhhcchhHHHH
Confidence 566777776665421 001123446999999999999999887654 344444322111 000
Q ss_pred ----HhhhccCCcEEEEeCCccc
Q 035724 272 ----HRVAMEQLKFLVIDEAAQL 290 (1939)
Q Consensus 272 ----~~l~~~~fdvVIIDEASQ~ 290 (1939)
.......+.+|+|||+..+
T Consensus 287 ~~~f~~A~~~~p~iLfLDEId~l 309 (489)
T 3hu3_A 287 RKAFEEAEKNAPAIIFIDELDAI 309 (489)
T ss_dssp HHHHHHHHHTCSEEEEEESHHHH
T ss_pred HHHHHHHHhcCCcEEEecchhhh
Confidence 1112344679999998544
No 283
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.61 E-value=0.038 Score=65.97 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.1
Q ss_pred EEEEeCCCCCchhHHHHHHHHHH
Q 035724 232 VELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 232 v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
..+|+||||||||+++..+...+
T Consensus 47 ~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHS
T ss_pred eEEEECCCCccHHHHHHHHHHhC
Confidence 37999999999999999888654
No 284
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.56 E-value=0.034 Score=74.19 Aligned_cols=62 Identities=21% Similarity=0.307 Sum_probs=42.1
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHhc-CCcEEEEcccchh--------h-HHhhhccCCcEEEEeCCcccchH
Q 035724 232 VELIWGPPGTGKTKTVSMLLDFCFT-KASLIFCTASSSY--------K-LHRVAMEQLKFLVIDEAAQLKEV 293 (1939)
Q Consensus 232 v~LI~GPPGTGKTtti~~li~~~l~-~a~vI~~T~sss~--------~-l~~l~~~~fdvVIIDEASQ~~E~ 293 (1939)
..+++||||||||+++..+.+.+.. ...++...++... . .......++.+|++||+..+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~ 594 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLTEKVRRKPYSVVLLDAIEKAHPD 594 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---CHHHHHHCSSSEEEEECGGGSCHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccchhhHHHHhCCCeEEEEeCccccCHH
Confidence 4799999999999999999877654 3444443332211 0 11223456789999999888654
No 285
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=94.55 E-value=0.097 Score=62.57 Aligned_cols=110 Identities=16% Similarity=0.124 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHH
Q 035724 1065 PEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCF 1144 (1939)
Q Consensus 1065 peeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy 1144 (1939)
...|..+|..++..++|++|+.+|.+|-....... .... +..... .......|...|..|.+.|++++|+++|
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--~~~~-~~~~~~----~~~~~~~~~nla~~~~~~g~~~~A~~~~ 219 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYES--SFSN-EEAQKA----QALRLASHLNLAMCHLKLQAFSAAIESC 219 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCC--CCCS-HHHHHH----HHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccc--cCCh-HHHHHH----HHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45789999999999999999999998743110000 0000 000000 0011235667778888888888887776
Q ss_pred HHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 035724 1145 YNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKG 1189 (1939)
Q Consensus 1145 ~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~ka 1189 (1939)
.++- ++.- .....+-..|.++...|+|++|.+.|.++
T Consensus 220 ~~al------~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 256 (336)
T 1p5q_A 220 NKAL------ELDS--NNEKGLSRRGEAHLAVNDFELARADFQKV 256 (336)
T ss_dssp HHHH------HHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHH------HhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6542 2210 11234667799999999999999999887
No 286
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.54 E-value=0.026 Score=68.90 Aligned_cols=45 Identities=18% Similarity=0.162 Sum_probs=30.3
Q ss_pred HHHHHHHHHH-hcccCC--CCCcEEEE--eCCCCCchhHHHHHHHHHHhc
Q 035724 212 SQAQAVLSCL-RRTHCD--HKATVELI--WGPPGTGKTKTVSMLLDFCFT 256 (1939)
Q Consensus 212 sQ~~AV~~~L-~~~~~~--~~~~v~LI--~GPPGTGKTtti~~li~~~l~ 256 (1939)
.+.+.+...+ ...... ..++..+| +||||||||+++..+.+.+..
T Consensus 29 ~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 29 GEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp HHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 4556666665 321111 23567899 999999999999998866543
No 287
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.54 E-value=0.033 Score=63.88 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=19.6
Q ss_pred EEEeCCCCCchhHHHHHHHHHH
Q 035724 233 ELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 233 ~LI~GPPGTGKTtti~~li~~~ 254 (1939)
.+|+|||||||||++..+...+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6999999999999999887654
No 288
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=94.46 E-value=0.037 Score=76.64 Aligned_cols=37 Identities=22% Similarity=0.144 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSML 250 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~l 250 (1939)
..+++.|.+|+..++.. .-.++++|.|||||.....+
T Consensus 77 f~pt~iQ~~ai~~il~g-------~dvlv~ApTGSGKTl~~l~~ 113 (1104)
T 4ddu_A 77 KDLTGYQRLWAKRIVQG-------KSFTMVAPTGVGKTTFGMMT 113 (1104)
T ss_dssp SCCCHHHHHHHHHHTTT-------CCEEECCSTTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcC-------CCEEEEeCCCCcHHHHHHHH
Confidence 46899999999999873 23599999999999954333
No 289
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.44 E-value=0.11 Score=69.31 Aligned_cols=41 Identities=22% Similarity=0.269 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 210 NDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
.+.+.+.+..++... ...-.+|+||||||||+++..+...+
T Consensus 191 r~~~i~~l~~~l~~~----~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 191 REKELERAIQVLCRR----RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp CHHHHHHHHHHHTSS----SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcc----CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 345555566666532 23445999999999999999888655
No 290
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=94.40 E-value=0.76 Score=46.06 Aligned_cols=62 Identities=13% Similarity=0.155 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcCh----HHHHHHHHHHHHcCCHHHHHHHHHHc
Q 035724 1122 VNLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREE----PELEKAGECFFLAGCYKLAADVYAKG 1189 (1939)
Q Consensus 1122 ~~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e----~~~~qaAe~fE~~G~y~eAAelY~ka 1189 (1939)
..+...+..|...|++++|+++|.++-... .+.... ..+...|..+...|++++|.++|.++
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 75 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIA------KEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKT 75 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHH------HHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 356677888888888888877776654332 221111 12556688888888888888877665
No 291
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=94.39 E-value=0.57 Score=45.35 Aligned_cols=82 Identities=15% Similarity=0.205 Sum_probs=46.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC--------HHHH
Q 035724 1124 LREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF--------FSEC 1195 (1939)
Q Consensus 1124 y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd--------~dkA 1195 (1939)
+...+..|...|++++|.++|.++- +... .....+...|..+...|++++|.++|.++-. +-..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 75 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKAL------ELDP--RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 75 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH------HHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHH------HcCC--cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHH
Confidence 3455666666777777766665442 1100 1122355667778888888888888776521 1122
Q ss_pred HHHHHhcCChHHHHHHHH
Q 035724 1196 LAVCSKGKLFEIGLQYMN 1213 (1939)
Q Consensus 1196 I~my~k~k~fd~airLv~ 1213 (1939)
..++...+++++|+.+.+
T Consensus 76 ~~~~~~~~~~~~A~~~~~ 93 (136)
T 2fo7_A 76 GNAYYKQGDYDEAIEYYQ 93 (136)
T ss_dssp HHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHH
Confidence 334555556666655555
No 292
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.37 E-value=0.02 Score=68.44 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=20.8
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDF 253 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~ 253 (1939)
.++.+|.||||||||+++..++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 456799999999999999988755
No 293
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=94.36 E-value=0.17 Score=57.08 Aligned_cols=28 Identities=11% Similarity=0.134 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhC
Q 035724 1065 PEEWKSRGIKLFHEHNYDMATICFEKAK 1092 (1939)
Q Consensus 1065 peeW~~lG~~l~~q~~yd~A~kcF~rAg 1092 (1939)
++.|..+|..++..++|++|+.+|.++-
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l 79 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFI 79 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 7889999999999999999999999873
No 294
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=94.31 E-value=0.16 Score=61.92 Aligned_cols=111 Identities=17% Similarity=0.125 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHH
Q 035724 1065 PEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCF 1144 (1939)
Q Consensus 1065 peeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy 1144 (1939)
...|..+|..++.+++|++|+.+|.+|-....... +....+... ..++. ....|...|..|.+.|++++|+++|
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~--~~~~~~~~~---~~~~~-~~~~~~nla~~~~~~g~~~~A~~~~ 296 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR--AAAEDADGA---KLQPV-ALSCVLNIGACKLKMSDWQGAVDSC 296 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--HHSCHHHHG---GGHHH-HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc--cccChHHHH---HHHHH-HHHHHHHHHHHHHhccCHHHHHHHH
Confidence 35699999999999999999999998844211100 000000000 01111 2345667777888888888887777
Q ss_pred HHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 035724 1145 YNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKG 1189 (1939)
Q Consensus 1145 ~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~ka 1189 (1939)
.++-..+- -....+-..|.++...|+|++|.+.|.++
T Consensus 297 ~~al~~~p--------~~~~a~~~lg~~~~~~g~~~eA~~~l~~A 333 (370)
T 1ihg_A 297 LEALEIDP--------SNTKALYRRAQGWQGLKEYDQALADLKKA 333 (370)
T ss_dssp HHHHTTCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCc--------hhHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 65533210 11223566688888888888888887765
No 295
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=94.30 E-value=0.19 Score=63.98 Aligned_cols=107 Identities=8% Similarity=-0.074 Sum_probs=54.7
Q ss_pred hhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHH
Q 035724 1078 EHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIY 1157 (1939)
Q Consensus 1078 q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY 1157 (1939)
.+++++|+.+|+++-.. +|. ....+...|..|...|++++|+++|.++-....
T Consensus 2 ~g~~~~A~~~~~~al~~---------------------~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----- 54 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH---------------------RPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHP----- 54 (568)
T ss_dssp ----------------------------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-----
T ss_pred CccHHHHHHHHHHHHHh---------------------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----
Confidence 36788888888876321 111 123456777888888888888777766543211
Q ss_pred HHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC--------HHHHHHHHHhcCChHHHHHHHHh
Q 035724 1158 LERREEPELEKAGECFFLAGCYKLAADVYAKGKF--------FSECLAVCSKGKLFEIGLQYMNH 1214 (1939)
Q Consensus 1158 ~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd--------~dkAI~my~k~k~fd~airLv~q 1214 (1939)
.....+...|.++...|++++|.++|.++-. +-....+|.+.+++++|+...++
T Consensus 55 ---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 116 (568)
T 2vsy_A 55 ---GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTR 116 (568)
T ss_dssp ---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1123356678888999999999988887622 12223355566666666666553
No 296
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.29 E-value=0.046 Score=72.92 Aligned_cols=60 Identities=23% Similarity=0.205 Sum_probs=38.6
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccch----------------h------h-HHhhhccCCcEEEEeCCc
Q 035724 232 VELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSS----------------Y------K-LHRVAMEQLKFLVIDEAA 288 (1939)
Q Consensus 232 v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss----------------~------~-l~~l~~~~fdvVIIDEAS 288 (1939)
..+++||||||||+++..+.+.+ ...++...++.. . . ...+...+..+|++||+.
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l--~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~ 567 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL--GIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIE 567 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH--TCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGG
T ss_pred EEEEECCCCCcHHHHHHHHHHHh--cCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCcc
Confidence 57999999999999999888766 233332221110 0 0 111233567899999998
Q ss_pred ccchH
Q 035724 289 QLKEV 293 (1939)
Q Consensus 289 Q~~E~ 293 (1939)
.+...
T Consensus 568 ~~~~~ 572 (758)
T 1r6b_X 568 KAHPD 572 (758)
T ss_dssp GSCHH
T ss_pred ccCHH
Confidence 87644
No 297
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=94.28 E-value=0.15 Score=49.69 Aligned_cols=96 Identities=19% Similarity=0.168 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHH
Q 035724 1064 SPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKC 1143 (1939)
Q Consensus 1064 tpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaec 1143 (1939)
.+..|..+|..++..++|+.|+.+|.++-.. .|. ....+...|..|...|++++|+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---------------------~~~-~~~~~~~~a~~~~~~~~~~~A~~~ 68 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL---------------------NPA-NAVYFCNRAAAYSKLGNYAGAVQD 68 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc---------------------CCC-CHHHHHHHHHHHHHhhchHHHHHH
Confidence 3567899999999999999999999986321 011 123456778888888888888887
Q ss_pred HHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 035724 1144 FYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKG 1189 (1939)
Q Consensus 1144 y~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~ka 1189 (1939)
|.++- ++.. .....+...|.++...|++++|.++|.++
T Consensus 69 ~~~~~------~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 106 (131)
T 2vyi_A 69 CERAI------CIDP--AYSKAYGRMGLALSSLNKHVEAVAYYKKA 106 (131)
T ss_dssp HHHHH------HHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHH------hcCc--cCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 76543 2200 11233556677777777777777776654
No 298
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=94.24 E-value=0.42 Score=55.25 Aligned_cols=102 Identities=10% Similarity=0.056 Sum_probs=67.0
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHHHHhC
Q 035724 1069 KSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCFYNLG 1148 (1939)
Q Consensus 1069 ~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy~kag 1148 (1939)
...|..+...++|++|+.+|.+|-.... ...++......+...+..|...|++++|.++|.++-
T Consensus 119 ~~~~~~~~~~~~~~~A~~~~~~al~~~~----------------~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal 182 (293)
T 2qfc_A 119 YYVAAYVLKKVDYEYCILELKKLLNQQL----------------TGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHTTCC----------------CSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHh----------------cCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4567777777899999999998743111 000111122356778888889999999988887654
Q ss_pred CHHHHHHHHHHhcCh-----HHHHHHHHHHHHcCCHHHHHHHHHHccCH
Q 035724 1149 EYERAGRIYLERREE-----PELEKAGECFFLAGCYKLAADVYAKGKFF 1192 (1939)
Q Consensus 1149 ~~~~A~eLY~e~~~e-----~~~~qaAe~fE~~G~y~eAAelY~kagd~ 1192 (1939)
.. +...... ..+...|.++...|+|++|.++|.++-+.
T Consensus 183 ~~------~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 183 KQ------LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HH------HHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HH------HHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 22 2221111 23556788899999999999988876443
No 299
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=94.23 E-value=0.099 Score=52.73 Aligned_cols=93 Identities=11% Similarity=0.016 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 035724 1067 EWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCFYN 1146 (1939)
Q Consensus 1067 eW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy~k 1146 (1939)
.|..+|..++..+++++|+.+|+++-.. +|.. ...+...+..|...|++++|+++|.+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~---------------------~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~ 76 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK---------------------EPER-EEAWRSLGLTQAENEKDGLAIIALNH 76 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------STTC-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6889999999999999999999976210 1222 23456788899999999999888764
Q ss_pred hCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 035724 1147 LGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKG 1189 (1939)
Q Consensus 1147 ag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~ka 1189 (1939)
+ .++-- -....+...|.++...|++++|.+.|.++
T Consensus 77 a------l~l~P--~~~~~~~~la~~~~~~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 77 A------RMLDP--KDIAVHAALAVSHTNEHNANAALASLRAW 111 (121)
T ss_dssp H------HHHCT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H------HHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4 33310 01123556677888888888888887765
No 300
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=94.14 E-value=0.16 Score=55.08 Aligned_cols=111 Identities=14% Similarity=0.088 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHH
Q 035724 1065 PEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCF 1144 (1939)
Q Consensus 1065 peeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy 1144 (1939)
...|..+|..++.+++|++|+.+|.++-....... .+........ ........+...|..|...|++++|+++|
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 111 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTE--EWDDQILLDK----KKNIEISCNLNLATCYNKNKDYPKAIDHA 111 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCT--TCCCHHHHHH----HHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc--ccchhhHHHH----HHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 45789999999999999999999998743110000 0000000000 00001234667777788888888887776
Q ss_pred HHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 035724 1145 YNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKG 1189 (1939)
Q Consensus 1145 ~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~ka 1189 (1939)
.++- ++.- .....+-..|.++...|+|++|.+.|.++
T Consensus 112 ~~al------~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 112 SKVL------KIDK--NNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHHH------HHST--TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHH------HhCc--ccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 5543 2210 11233566788888888888888887765
No 301
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=94.11 E-value=0.37 Score=59.00 Aligned_cols=98 Identities=7% Similarity=0.011 Sum_probs=72.7
Q ss_pred cCCHHHHHHHHHHHHHhhC-HHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHH
Q 035724 1062 ASSPEEWKSRGIKLFHEHN-YDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSA 1140 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~-yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kA 1140 (1939)
.....-|..+|..+...++ |++|+.+|.+|-. .+|.. ...|...+.+|...|++++|
T Consensus 128 P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~---------------------l~P~~-~~a~~~~g~~~~~~g~~~eA 185 (382)
T 2h6f_A 128 AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE---------------------EQPKN-YQVWHHRRVLVEWLRDPSQE 185 (382)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH---------------------HCTTC-HHHHHHHHHHHHHHTCCTTH
T ss_pred ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHH---------------------HCCCC-HHHHHHHHHHHHHccCHHHH
Confidence 4578899999999999997 9999999998622 02332 23466777788888999999
Q ss_pred HHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 035724 1141 AKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKG 1189 (1939)
Q Consensus 1141 aecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~ka 1189 (1939)
+.+|.++ .++ .--....|...|.++...|+|++|.++|.++
T Consensus 186 l~~~~ka------l~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~a 226 (382)
T 2h6f_A 186 LEFIADI------LNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQL 226 (382)
T ss_dssp HHHHHHH------HHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred HHHHHHH------HHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 8877654 333 1011234677789999999999999999887
No 302
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=94.08 E-value=0.12 Score=51.19 Aligned_cols=99 Identities=16% Similarity=0.080 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 035724 1066 EEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCFY 1145 (1939)
Q Consensus 1066 eeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy~ 1145 (1939)
+.+..+|..++..++|++|+.+|.++-... ..++. ....+...+..|.+.|++++|+++|.
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------------p~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~ 63 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELY------------------PNGVY-TPNALYWLGESYYATRNFQLAEAQFR 63 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------SSSTT-HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC------------------CCCcc-cHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 356788999999999999999999752100 00111 11345567788888888888877776
Q ss_pred HhCCHHHHHHHHHHhcC-hHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 035724 1146 NLGEYERAGRIYLERRE-EPELEKAGECFFLAGCYKLAADVYAKG 1189 (1939)
Q Consensus 1146 kag~~~~A~eLY~e~~~-e~~~~qaAe~fE~~G~y~eAAelY~ka 1189 (1939)
++- +.+-.... ...+-..|.++...|++++|.+.|.++
T Consensus 64 ~~~------~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 64 DLV------SRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHH------HHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHH------HHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 542 22111000 122455677777777777777776554
No 303
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.08 E-value=0.055 Score=69.47 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=22.3
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 229 KATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 229 ~~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
..+..+|.||||||||+++..+...+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 45678999999999999999887655
No 304
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=94.04 E-value=0.061 Score=69.78 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTV 247 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti 247 (1939)
..+.+.|.+||..++.. .-.++.+|.|+|||...
T Consensus 43 ~~~rp~Q~~~i~~il~g-------~d~lv~~pTGsGKTl~~ 76 (591)
T 2v1x_A 43 EKFRPLQLETINVTMAG-------KEVFLVMPTGGGKSLCY 76 (591)
T ss_dssp CSCCTTHHHHHHHHHTT-------CCEEEECCTTSCTTHHH
T ss_pred CCCCHHHHHHHHHHHcC-------CCEEEEECCCChHHHHH
Confidence 46788999999999983 33699999999999854
No 305
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.98 E-value=0.076 Score=63.28 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=26.0
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHh-cCCcEEEE
Q 035724 229 KATVELIWGPPGTGKTKTVSMLLDFCF-TKASLIFC 263 (1939)
Q Consensus 229 ~~~v~LI~GPPGTGKTtti~~li~~~l-~~a~vI~~ 263 (1939)
.+.+.+|.||||+|||||+..++..+. ...+|.+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv 138 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA 138 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE
Confidence 356889999999999999999985543 23455543
No 306
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.93 E-value=0.05 Score=63.41 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=19.6
Q ss_pred EEEeCCCCCchhHHHHHHHHHH
Q 035724 233 ELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 233 ~LI~GPPGTGKTtti~~li~~~ 254 (1939)
.+|.|||||||||++..+...+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 6999999999999999887655
No 307
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=93.91 E-value=0.27 Score=62.32 Aligned_cols=101 Identities=14% Similarity=0.064 Sum_probs=70.3
Q ss_pred HHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHHHHhCC
Q 035724 1070 SRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCFYNLGE 1149 (1939)
Q Consensus 1070 ~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy~kag~ 1149 (1939)
..+..+-.+|+|++|...|+++-... .+ .+....|. ....+...|..|...|++++|+.+|.
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~----~~---------~lg~~Hp~-~a~~~~nLa~~y~~~g~~~eA~~~~~---- 375 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQ----EP---------VFADTNLY-VLRLLSIASEVLSYLQAYEEASHYAR---- 375 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHH----TT---------TBCTTSHH-HHHHHHHHHHHHHHTTCHHHHHHHHH----
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHH----HH---------hcCCCCHH-HHHHHHHHHHHHHHhcCHHHHHHHHH----
Confidence 34556667899999999999863211 01 11112233 33457889999999999999988875
Q ss_pred HHHHHHHHHHhcChH------HHHHHHHHHHHcCCHHHHHHHHHHcc
Q 035724 1150 YERAGRIYLERREEP------ELEKAGECFFLAGCYKLAADVYAKGK 1190 (1939)
Q Consensus 1150 ~~~A~eLY~e~~~e~------~~~qaAe~fE~~G~y~eAAelY~kag 1190 (1939)
+|.+++.+..+.. .+...|..|...|+|++|..+|.++-
T Consensus 376 --~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 376 --RMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp --HHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5677777665442 26778888888888888888887653
No 308
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.91 E-value=0.063 Score=72.62 Aligned_cols=77 Identities=26% Similarity=0.327 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhc--------CCcEEEEcccchh-----------hH
Q 035724 211 DSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFT--------KASLIFCTASSSY-----------KL 271 (1939)
Q Consensus 211 ~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~--------~a~vI~~T~sss~-----------~l 271 (1939)
+...+.+..++... ..++ .+|+||||||||+++..+...+.. +..++...++... .+
T Consensus 176 ~~~i~~l~~~l~~~---~~~~-vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l 251 (854)
T 1qvr_A 176 DEEIRRVIQILLRR---TKNN-PVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERL 251 (854)
T ss_dssp HHHHHHHHHHHHCS---SCCC-CEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHH
T ss_pred HHHHHHHHHHHhcC---CCCc-eEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHH
Confidence 34555555555532 2233 499999999999999999876633 5556554322110 01
Q ss_pred Hhh----h-ccCCcEEEEeCCcccc
Q 035724 272 HRV----A-MEQLKFLVIDEAAQLK 291 (1939)
Q Consensus 272 ~~l----~-~~~fdvVIIDEASQ~~ 291 (1939)
..+ . .....+++|||+..+.
T Consensus 252 ~~~~~~~~~~~~~~iL~IDEi~~l~ 276 (854)
T 1qvr_A 252 KAVIQEVVQSQGEVILFIDELHTVV 276 (854)
T ss_dssp HHHHHHHHTTCSSEEEEECCC----
T ss_pred HHHHHHHHhcCCCeEEEEecHHHHh
Confidence 111 1 1235688889888765
No 309
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=93.89 E-value=0.2 Score=55.66 Aligned_cols=150 Identities=6% Similarity=-0.075 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhCC--cchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHH
Q 035724 1065 PEEWKSRGIKLFHEHNYDMATICFEKAKD--SYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAK 1142 (1939)
Q Consensus 1065 peeW~~lG~~l~~q~~yd~A~kcF~rAgd--~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAae 1142 (1939)
++.|..+|..++..++|++|+.+|.++-. ........++..+........ +. ....|...+..+...|++++|++
T Consensus 41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~A~~ 117 (225)
T 2yhc_A 41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALD--DS-ALQGFFGVDRSDRDPQQARAAFS 117 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHH--C---------------CCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhh--hh-hhhhhhccchhhcCcHHHHHHHH
Confidence 56899999999999999999999998632 111111112211111100000 00 00111122233333444445544
Q ss_pred HHHHhCC-------HHHHHHHHHHhc--ChHHHHHHHHHHHHcCCHHHHHHHHHHccC-----------HHHHHHHHHhc
Q 035724 1143 CFYNLGE-------YERAGRIYLERR--EEPELEKAGECFFLAGCYKLAADVYAKGKF-----------FSECLAVCSKG 1202 (1939)
Q Consensus 1143 cy~kag~-------~~~A~eLY~e~~--~e~~~~qaAe~fE~~G~y~eAAelY~kagd-----------~dkAI~my~k~ 1202 (1939)
.|.++-. ...|........ ........|.++.+.|+|.+|.+.|.++-+ +.....+|.+.
T Consensus 118 ~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~ 197 (225)
T 2yhc_A 118 DFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQM 197 (225)
T ss_dssp HHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHc
Confidence 4443211 011110000000 001123568889999999999999988621 22344577889
Q ss_pred CChHHHHHHHHhhhh
Q 035724 1203 KLFEIGLQYMNHWKQ 1217 (1939)
Q Consensus 1203 k~fd~airLv~q~~d 1217 (1939)
|++++|+...+....
T Consensus 198 g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 198 QMNAQAEKVAKIIAA 212 (225)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHh
Confidence 999999988875433
No 310
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.89 E-value=0.075 Score=66.30 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=25.2
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHh-cCCcEEEE
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCF-TKASLIFC 263 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l-~~a~vI~~ 263 (1939)
+.+.+|.||||+||||++..++..+. ++.+|++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv 133 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALI 133 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 35788999999999999999985443 33455544
No 311
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=93.88 E-value=0.049 Score=69.61 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTV 247 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti 247 (1939)
..+.+.|.+|+..++.. .-.++.+|.|+|||...
T Consensus 24 ~~~r~~Q~~~i~~il~g-------~d~lv~apTGsGKTl~~ 57 (523)
T 1oyw_A 24 QQFRPGQEEIIDTVLSG-------RDCLVVMPTGGGKSLCY 57 (523)
T ss_dssp SSCCTTHHHHHHHHHTT-------CCEEEECSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcC-------CCEEEECCCCcHHHHHH
Confidence 35788999999999973 33689999999999743
No 312
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.83 E-value=0.069 Score=61.00 Aligned_cols=82 Identities=13% Similarity=0.168 Sum_probs=48.7
Q ss_pred CcEEEEeCCCCCchhHHHHHHH-HHHhcCCcEEEEcccch----hhHH---hh---------------hccCCcEEEEeC
Q 035724 230 ATVELIWGPPGTGKTKTVSMLL-DFCFTKASLIFCTASSS----YKLH---RV---------------AMEQLKFLVIDE 286 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li-~~~l~~a~vI~~T~sss----~~l~---~l---------------~~~~fdvVIIDE 286 (1939)
..+.++.||.|+||||.+..++ +....+-++++.+..-. .... .+ ....+|+|+|||
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~G~~~~a~~i~~~~di~~~~~~~dvViIDE 98 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDE 98 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC-----------CEEEEESSGGGGHHHHTTCSEEEESS
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhcCCeeEEEecCCHHHHHHHhccCCEEEEEc
Confidence 4689999999999998887666 44445555555431100 0000 00 114689999999
Q ss_pred CcccchHHhhccccCCCcceEEEEe
Q 035724 287 AAQLKEVESAIPLKLPGIQHAILIG 311 (1939)
Q Consensus 287 ASQ~~E~e~lipL~~~~~~rlVLiG 311 (1939)
|.-+....-++-+......++|+.|
T Consensus 99 aQF~~~v~el~~~l~~~gi~VI~~G 123 (234)
T 2orv_A 99 GQFFPDIVEFCEAMANAGKTVIVAA 123 (234)
T ss_dssp GGGCTTHHHHHHHHHHTTCEEEEEC
T ss_pred hhhhhhHHHHHHHHHhCCCEEEEEe
Confidence 9988653222222112346888887
No 313
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.83 E-value=0.11 Score=58.71 Aligned_cols=81 Identities=16% Similarity=0.193 Sum_probs=47.3
Q ss_pred CcEEEEeCCCCCchhHHHHHHH-HHHhcCCcEEEEcccch------------------------hhHHhhhccCCcEEEE
Q 035724 230 ATVELIWGPPGTGKTKTVSMLL-DFCFTKASLIFCTASSS------------------------YKLHRVAMEQLKFLVI 284 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li-~~~l~~a~vI~~T~sss------------------------~~l~~l~~~~fdvVII 284 (1939)
..+.+|.||.|+||||.+...+ +......++++.+..-. ..+...-..++|+|+|
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~i~~~~dvV~I 107 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHDLTNVDVIGI 107 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGSCCTTCSEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHHHhcCCCEEEE
Confidence 5789999999999999665555 33344444444322110 0111111246899999
Q ss_pred eCCcccchH--HhhccccCCCcceEEEEe
Q 035724 285 DEAAQLKEV--ESAIPLKLPGIQHAILIG 311 (1939)
Q Consensus 285 DEASQ~~E~--e~lipL~~~~~~rlVLiG 311 (1939)
|||.-+++. +.+.-++. ....++..|
T Consensus 108 DEaQFf~~~~v~~l~~la~-~gi~Vi~~G 135 (219)
T 3e2i_A 108 DEVQFFDDEIVSIVEKLSA-DGHRVIVAG 135 (219)
T ss_dssp CCGGGSCTHHHHHHHHHHH-TTCEEEEEE
T ss_pred echhcCCHHHHHHHHHHHH-CCCEEEEee
Confidence 999988864 22222222 346777776
No 314
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=93.83 E-value=0.038 Score=52.65 Aligned_cols=98 Identities=17% Similarity=0.215 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHH
Q 035724 1064 SPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKC 1143 (1939)
Q Consensus 1064 tpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaec 1143 (1939)
++..|..+|..++..++|++|+.+|.++-... +. ....+...|..|...|++++|+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---------------------~~-~~~~~~~~a~~~~~~~~~~~A~~~ 62 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD---------------------PE-ESKYWLMKGKALYNLERYEEAVDC 62 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC---------------------CC-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC---------------------cC-CHHHHHHHHHHHHHccCHHHHHHH
Confidence 34567889999999999999999999763210 11 122456778888888999888887
Q ss_pred HHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHc-CCHHHHHHHHHHc
Q 035724 1144 FYNLGEYERAGRIYLERREEPELEKAGECFFLA-GCYKLAADVYAKG 1189 (1939)
Q Consensus 1144 y~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~-G~y~eAAelY~ka 1189 (1939)
|.++- ++.-.......+...|.++... |++++|.+++.++
T Consensus 63 ~~~a~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 63 YNYVI------NVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp HHHHH------HTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHH
T ss_pred HHHHH------HhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 76542 2100000123355667777777 7777777777665
No 315
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.76 E-value=0.18 Score=67.35 Aligned_cols=41 Identities=29% Similarity=0.427 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 210 NDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
.+...+.+..++... ..++ .|++||||||||+++..+.+.+
T Consensus 185 ~~~~i~~l~~~l~~~---~~~~-vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 185 RSKEIQRVIEVLSRR---TKNN-PVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp CHHHHHHHHHHHHCS---SSCE-EEEESCTTTTTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhCC---CCCC-eEEECCCCCCHHHHHHHHHHHH
Confidence 455566666666532 2233 5999999999999999888765
No 316
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=93.76 E-value=0.2 Score=58.20 Aligned_cols=98 Identities=20% Similarity=0.254 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHH
Q 035724 1064 SPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKC 1143 (1939)
Q Consensus 1064 tpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaec 1143 (1939)
+.+.|..+|..++..++|++|+.+|.+|-.. +|. ....|...|..|.+.|++++|+++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---------------------~p~-~~~~~~~la~~~~~~~~~~~A~~~ 60 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---------------------NPL-VAVYYTNRALCYLKMQQPEQALAD 60 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CSC-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------CCc-cHHHHHHHHHHHHHhcCHHHHHHH
Confidence 5678999999999999999999999976321 122 123566778888888888888887
Q ss_pred HHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC
Q 035724 1144 FYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF 1191 (1939)
Q Consensus 1144 y~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd 1191 (1939)
|.++-...- .....+...|..+...|+|++|.+.|.++-.
T Consensus 61 ~~~al~~~p--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 61 CRRALELDG--------QSVKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTSCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 776543210 0112355668888888998888888876533
No 317
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=93.75 E-value=0.18 Score=62.96 Aligned_cols=112 Identities=15% Similarity=0.085 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHH
Q 035724 1065 PEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCF 1144 (1939)
Q Consensus 1065 peeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy 1144 (1939)
...|..+|..++++++|++|+.+|.+|-......- .... +..... .......|...|..|.+.|++++|+++|
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~--~~~~-~~~~~~----~~~~~~~~~nla~~~~~~g~~~~A~~~~ 340 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEY--GLSE-KESKAS----ESFLLAAFLNLAMCYLKLREYTKAVECC 340 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCC--SCCH-HHHHHH----HHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cCCh-HHHHHH----HHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 45799999999999999999999998743100000 0000 000000 0112234666777777777777777666
Q ss_pred HHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC
Q 035724 1145 YNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF 1191 (1939)
Q Consensus 1145 ~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd 1191 (1939)
.++- ++.- .....+-..|.++...|+|++|.+.|.++-.
T Consensus 341 ~~al------~~~p--~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 341 DKAL------GLDS--ANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp HHHH------HHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHH------hcCC--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5542 2200 1123466779999999999999999988743
No 318
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.73 E-value=0.064 Score=72.57 Aligned_cols=63 Identities=22% Similarity=0.314 Sum_probs=39.6
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHHhc-CCcEEEEcccchh------h----------------H-HhhhccCCcEEEEeC
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFCFT-KASLIFCTASSSY------K----------------L-HRVAMEQLKFLVIDE 286 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~l~-~a~vI~~T~sss~------~----------------l-~~l~~~~fdvVIIDE 286 (1939)
...+|+||||||||+++..+...+.. ...++...++... . + ..+...+..+|+|||
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDE 668 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDE 668 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHHCSSEEEEESS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEec
Confidence 46799999999999999999877654 2334433221100 0 0 011224567899999
Q ss_pred CcccchH
Q 035724 287 AAQLKEV 293 (1939)
Q Consensus 287 ASQ~~E~ 293 (1939)
+..+...
T Consensus 669 i~~l~~~ 675 (854)
T 1qvr_A 669 IEKAHPD 675 (854)
T ss_dssp GGGSCHH
T ss_pred ccccCHH
Confidence 9877654
No 319
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=93.72 E-value=1.6 Score=50.24 Aligned_cols=128 Identities=7% Similarity=-0.019 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhCCHH----HHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHcc-------
Q 035724 1122 VNLREAAKIFEAIGKADSAAKCFYNLGEYE----RAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGK------- 1190 (1939)
Q Consensus 1122 ~~y~eAA~lYe~~G~~~kAaecy~kag~~~----~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kag------- 1190 (1939)
..+.+.+..+...|++++|.++|.++.... ....+ . .-+...|.++...|++++|.++|.++-
T Consensus 76 ~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~-~-----~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~ 149 (293)
T 3u3w_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQF-L-----QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI 149 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHH-H-----HHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCS
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHH-H-----HHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccc
Confidence 345566777777888888888777653210 00000 0 012345777777889999999998872
Q ss_pred C-------HHHHHHHHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHH
Q 035724 1191 F-------FSECLAVCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSM 1263 (1939)
Q Consensus 1191 d-------~dkAI~my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A 1263 (1939)
+ +.....+|...++|++|+.+.++--+... ............+-..+..|.+.|+++.|
T Consensus 150 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~--------------~~~~~~~~~~~~~~nlg~~y~~~~~y~~A 215 (293)
T 3u3w_A 150 DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLE--------------ALHDNEEFDVKVRYNHAKALYLDSRYEES 215 (293)
T ss_dssp CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------------HSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------------hcccchhHHHHHHHHHHHHHHHHhHHHHH
Confidence 2 22233367788899988888874322111 00000111112233447789999999988
Q ss_pred HHHHHH
Q 035724 1264 MKFVKS 1269 (1939)
Q Consensus 1264 ~~~~~~ 1269 (1939)
++++..
T Consensus 216 ~~~~~~ 221 (293)
T 3u3w_A 216 LYQVNK 221 (293)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 886653
No 320
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=93.69 E-value=0.2 Score=48.29 Aligned_cols=96 Identities=20% Similarity=0.345 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHH
Q 035724 1064 SPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKC 1143 (1939)
Q Consensus 1064 tpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaec 1143 (1939)
....|..+|..+...++++.|+.+|.++-.. .+. ....+...+..|...|++++|+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---------------------~~~-~~~~~~~la~~~~~~~~~~~A~~~ 65 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---------------------DPN-NAEAWYNLGNAYYKQGDYDEAIEY 65 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------------CcC-cHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3568999999999999999999999986321 011 122456778888888888888877
Q ss_pred HHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 035724 1144 FYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKG 1189 (1939)
Q Consensus 1144 y~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~ka 1189 (1939)
|.++- ++.. .....+...|.++...|++++|.++|.++
T Consensus 66 ~~~~~------~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 66 YQKAL------ELDP--NNAEAWYNLGNAYYKQGDYDEAIEYYQKA 103 (125)
T ss_dssp HHHHH------HHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHH------HhCC--ccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 76542 2200 11123455677777777777777766554
No 321
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=93.67 E-value=0.27 Score=52.31 Aligned_cols=48 Identities=6% Similarity=-0.222 Sum_probs=28.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHccC----------HHHHHHHHHhcCChHHHHHHHH
Q 035724 1166 LEKAGECFFLAGCYKLAADVYAKGKF----------FSECLAVCSKGKLFEIGLQYMN 1213 (1939)
Q Consensus 1166 ~~qaAe~fE~~G~y~eAAelY~kagd----------~dkAI~my~k~k~fd~airLv~ 1213 (1939)
+...|.++...|++++|.+.|.++-. +.....++...|++++|+...+
T Consensus 111 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 111 ACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 55567777778888888877776511 1122335555666665555544
No 322
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=93.64 E-value=0.2 Score=53.26 Aligned_cols=125 Identities=10% Similarity=0.008 Sum_probs=65.4
Q ss_pred cCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcch-HHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHc-CCHHH
Q 035724 1062 ASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYW-EGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAI-GKADS 1139 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~-~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~-G~~~k 1139 (1939)
..++.-|..+|..+...|++++|+.+|+++-.... ................ ....+...+++|.+..-.. .-+-.
T Consensus 37 P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~---~~~~a~~~~~~al~~~P~~~~~~~~ 113 (176)
T 2r5s_A 37 QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQA---AESPELKRLEQELAANPDNFELACE 113 (176)
T ss_dssp HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHH---TSCHHHHHHHHHHHHSTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhc---ccchHHHHHHHHHHhCCCCHHHHHH
Confidence 45678999999999999999999999999854321 1111110000000000 0000122222222211000 00011
Q ss_pred HHHHHHHhCCHHHHHHHHHHhcC-------hHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 035724 1140 AAKCFYNLGEYERAGRIYLERRE-------EPELEKAGECFFLAGCYKLAADVYAKG 1189 (1939)
Q Consensus 1140 Aaecy~kag~~~~A~eLY~e~~~-------e~~~~qaAe~fE~~G~y~eAAelY~ka 1189 (1939)
-+.++...|++++|.+.|.+... ...+...|.++...|++++|...|.++
T Consensus 114 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 114 LAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 13344444555555555444311 124667789999999999999998754
No 323
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.59 E-value=0.042 Score=73.25 Aligned_cols=58 Identities=24% Similarity=0.364 Sum_probs=35.0
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccc---------hhhHHh----hhccCCcEEEEeCCccc
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASS---------SYKLHR----VAMEQLKFLVIDEAAQL 290 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~ss---------s~~l~~----l~~~~fdvVIIDEASQ~ 290 (1939)
.=.|++||||||||+++.+++..+- ..++...++. ...+.. .....+.+|+|||+--+
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~elg--~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal 309 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI 309 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHTTTT--CEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC--CeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhccc
Confidence 3469999999999999998875442 3333322111 111111 12345789999997643
No 324
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=93.45 E-value=0.88 Score=49.02 Aligned_cols=83 Identities=6% Similarity=0.037 Sum_probs=60.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC--------HHHH
Q 035724 1124 LREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF--------FSEC 1195 (1939)
Q Consensus 1124 y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd--------~dkA 1195 (1939)
+...|..|...|++++|+++|.++-+. ....+...|.++...|+|.+|.+.|.++-. +-..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~-----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 77 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDP-----------HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQR 77 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSC-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCC-----------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence 445666777788888888888776321 123466779999999999999999988732 2233
Q ss_pred HHHHHhcCChHHHHHHHHhhhh
Q 035724 1196 LAVCSKGKLFEIGLQYMNHWKQ 1217 (1939)
Q Consensus 1196 I~my~k~k~fd~airLv~q~~d 1217 (1939)
..+|.+.+++++|+...++.-+
T Consensus 78 g~~~~~~~~~~~A~~~~~~al~ 99 (213)
T 1hh8_A 78 GMLYYQTEKYDLAIKDLKEALI 99 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHH
Confidence 4577889999999988875444
No 325
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=93.44 E-value=2.4 Score=52.59 Aligned_cols=137 Identities=11% Similarity=-0.014 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHHhh-----CHHHHHHHHHHhCCcchH----HHHHHhhhHHhhhhhhcCCchHhHHHH----------
Q 035724 1064 SPEEWKSRGIKLFHEH-----NYDMATICFEKAKDSYWE----GRSKATGLKATADRCRSSNPKQANVNL---------- 1124 (1939)
Q Consensus 1064 tpeeW~~lG~~l~~q~-----~yd~A~kcF~rAgd~~~~----~l~kA~~l~e~a~~~~s~~~~ea~~~y---------- 1124 (1939)
+++.+..+|..+...+ ++++|+.+|++|-+.... .+...+. ...... .+ ..+...+
T Consensus 68 ~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~---~~~~~~-~~-~~a~~~~~~a~~~g~~~ 142 (452)
T 3e4b_A 68 SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYL---QYPHSF-PN-VNAQQQISQWQAAGYPE 142 (452)
T ss_dssp ---CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHH---HCGGGC-TT-CCHHHHHHHHHHHTCTT
T ss_pred CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hCCCCC-CC-HHHHHHHHHHHHCCCHH
Confidence 6777888888555554 889999999987432111 1111111 000000 00 1111122
Q ss_pred --HHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHh--cChHHHHHHHHHHHHcC---CHHHHHHHHHHccC---H--
Q 035724 1125 --REAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLER--REEPELEKAGECFFLAG---CYKLAADVYAKGKF---F-- 1192 (1939)
Q Consensus 1125 --~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~--~~e~~~~qaAe~fE~~G---~y~eAAelY~kagd---~-- 1192 (1939)
...+.+|...+.++++ .+.+..++... .....+...|..+...| ++.+|.+.|.++-+ .
T Consensus 143 a~~~Lg~~y~~~~~~~~~---------~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a 213 (452)
T 3e4b_A 143 AGLAQVLLYRTQGTYDQH---------LDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTA 213 (452)
T ss_dssp HHHHHHHHHHHHTCGGGG---------HHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHcCCCcccC---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHH
Confidence 2233444444433322 22333333322 12234666788888888 88899998888722 1
Q ss_pred ---HHHHHHHHhc----CChHHHHHHHHh
Q 035724 1193 ---SECLAVCSKG----KLFEIGLQYMNH 1214 (1939)
Q Consensus 1193 ---dkAI~my~k~----k~fd~airLv~q 1214 (1939)
-..-.+|..+ +++++|+++.++
T Consensus 214 ~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~ 242 (452)
T 3e4b_A 214 QRVDSVARVLGDATLGTPDEKTAQALLEK 242 (452)
T ss_dssp HHHHHHHHHHTCGGGSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 1233455555 688888888774
No 326
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=93.33 E-value=0.084 Score=66.99 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=19.6
Q ss_pred EEEeCCCCCchhHHHHHHHHHH
Q 035724 233 ELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 233 ~LI~GPPGTGKTtti~~li~~~ 254 (1939)
.+|+||||||||+++.++...+
T Consensus 67 vLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6999999999999999887654
No 327
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=93.26 E-value=0.055 Score=72.32 Aligned_cols=36 Identities=19% Similarity=0.379 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHH
Q 035724 210 NDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLL 251 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li 251 (1939)
...|++++..++.. +...+|.||+|+|||+.+..++
T Consensus 95 ~~~q~~~i~~~l~~------~~~vii~gpTGSGKTtllp~ll 130 (773)
T 2xau_A 95 VHAQRDEFLKLYQN------NQIMVFVGETGSGKTTQIPQFV 130 (773)
T ss_dssp GGGGHHHHHHHHHH------CSEEEEECCTTSSHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC------CCeEEEECCCCCCHHHHHHHHH
Confidence 34688888888874 4678999999999999766554
No 328
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=93.25 E-value=0.27 Score=64.64 Aligned_cols=158 Identities=8% Similarity=-0.105 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHH
Q 035724 1065 PEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCF 1144 (1939)
Q Consensus 1065 peeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy 1144 (1939)
+..+...| +..+++++|+.+|.++-+.... . ....+|. ....+...|..|.+.|++++|+++|
T Consensus 394 ~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~---~----------~~~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~~ 456 (681)
T 2pzi_A 394 VAASVLQA---TVLSQPVQTLDSLRAARHGALD---A----------DGVDFSE-SVELPLMEVRALLDLGDVAKATRKL 456 (681)
T ss_dssp TTHHHHHH---TTTCCHHHHHHHHHHHHTC--------------------CCTT-CSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cchHHhhc---ccccCHHHHHHHHHHhhhhccc---c----------ccccccc-chhHHHHHHHHHHhcCCHHHHHHHH
Confidence 33444444 6789999999999987421110 0 0011222 2234667788888889999888777
Q ss_pred HHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC--------HHHHHHHHHhcCChHHHHHHHHhhh
Q 035724 1145 YNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF--------FSECLAVCSKGKLFEIGLQYMNHWK 1216 (1939)
Q Consensus 1145 ~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd--------~dkAI~my~k~k~fd~airLv~q~~ 1216 (1939)
.++ .++.- -....+...|.++...|+|++|.+.|.++-. +-....+|.+.++|++ +...++--
T Consensus 457 ~~a------l~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al 527 (681)
T 2pzi_A 457 DDL------AERVG--WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVW 527 (681)
T ss_dssp HHH------HHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHH
T ss_pred HHH------hccCc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHH
Confidence 654 33210 1123466778999999999999999988732 1223335666677666 55544322
Q ss_pred hcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 035724 1217 QHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKS 1269 (1939)
Q Consensus 1217 d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~ 1269 (1939)
+..+. ....+..-+..|.+.|++++|++.+..
T Consensus 528 ~~~P~---------------------~~~a~~~lg~~~~~~g~~~~A~~~~~~ 559 (681)
T 2pzi_A 528 STNDG---------------------VISAAFGLARARSAEGDRVGAVRTLDE 559 (681)
T ss_dssp HHCTT---------------------CHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HhCCc---------------------hHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 11110 011112226678888988888887764
No 329
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=92.92 E-value=0.12 Score=62.67 Aligned_cols=35 Identities=23% Similarity=0.270 Sum_probs=26.2
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHh-cCCcEEEEc
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCF-TKASLIFCT 264 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l-~~a~vI~~T 264 (1939)
..+++|.||||+||||++..++..+. ....+++.+
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 67899999999999999988875443 334555443
No 330
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=92.85 E-value=0.11 Score=75.06 Aligned_cols=37 Identities=22% Similarity=0.280 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSM 249 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~ 249 (1939)
..+|+-|.+++..++.. +.=.+|.+|.|+|||.....
T Consensus 925 ~~fnpiQ~q~~~~l~~~------~~nvlv~APTGSGKTliael 961 (1724)
T 4f92_B 925 PFFNPIQTQVFNTVYNS------DDNVFVGAPTGSGKTICAEF 961 (1724)
T ss_dssp SBCCHHHHHHHHHHHSC------CSCEEEECCTTSCCHHHHHH
T ss_pred CCCCHHHHHHHHHHhcC------CCcEEEEeCCCCCchHHHHH
Confidence 45999999999999874 23359999999999987643
No 331
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.75 E-value=0.13 Score=62.52 Aligned_cols=27 Identities=33% Similarity=0.652 Sum_probs=23.4
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHhc
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCFT 256 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l~ 256 (1939)
..+.+|.||+|+|||||+..++..+-.
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccC
Confidence 568999999999999999999866543
No 332
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=92.74 E-value=0.43 Score=62.73 Aligned_cols=123 Identities=15% Similarity=-0.103 Sum_probs=83.3
Q ss_pred cCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHH
Q 035724 1062 ASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAA 1141 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAa 1141 (1939)
..+++.|..+|..++..++|++|+.+|.++-.. +|. ....+...+..|...|++++|+
T Consensus 430 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---------------------~p~-~~~a~~~lg~~~~~~g~~~~A~ 487 (681)
T 2pzi_A 430 SESVELPLMEVRALLDLGDVAKATRKLDDLAER---------------------VGW-RWRLVWYRAVAELLTGDYDSAT 487 (681)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------------HCC-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc---------------------Ccc-hHHHHHHHHHHHHHcCCHHHHH
Confidence 345678999999999999999999999986320 022 1224556777788888888887
Q ss_pred HHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC--------HHHHHHHHHhcCChHHHHHHHH
Q 035724 1142 KCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF--------FSECLAVCSKGKLFEIGLQYMN 1213 (1939)
Q Consensus 1142 ecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd--------~dkAI~my~k~k~fd~airLv~ 1213 (1939)
++|.++ .++-- -....+...|.++.+.|+|++ .+.|.++-. +-....++.+.|++++|+...+
T Consensus 488 ~~~~~a------l~l~P--~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 488 KHFTEV------LDTFP--GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp HHHHHH------HHHST--TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHH------HHhCC--CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 776543 33200 112335667888888888888 888887622 2223346777888888888877
Q ss_pred hh
Q 035724 1214 HW 1215 (1939)
Q Consensus 1214 q~ 1215 (1939)
+.
T Consensus 559 ~a 560 (681)
T 2pzi_A 559 EV 560 (681)
T ss_dssp TS
T ss_pred hh
Confidence 43
No 333
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=92.66 E-value=0.45 Score=59.32 Aligned_cols=94 Identities=12% Similarity=-0.046 Sum_probs=64.8
Q ss_pred HhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHH
Q 035724 1077 HEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCFYNLGEYERAGRI 1156 (1939)
Q Consensus 1077 ~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eL 1156 (1939)
..|+|++|...|+++-.... + .+....|. ....+..+|..|...|++++|+.+|.+ |.++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~----~---------~lg~~Hp~-~a~~~~nLa~~y~~~g~~~eA~~~~~~------aL~i 369 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMS----S---------VFEDSNVY-MLHMMYQAMGVCLYMQDWEGALKYGQK------IIKP 369 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHT----T---------TBCTTSHH-HHHHHHHHHHHHHHTTCHHHHHHHHHH------HHHH
T ss_pred hccCHHHHHHHHHHHHHHhh----C---------ccChhchH-HHHHHHHHHHHHHhhcCHHHHHHHHHH------HHHH
Confidence 45789999999987632110 0 11112233 234578899999999999999887765 5677
Q ss_pred HHHhcCh------HHHHHHHHHHHHcCCHHHHHHHHHHcc
Q 035724 1157 YLERREE------PELEKAGECFFLAGCYKLAADVYAKGK 1190 (1939)
Q Consensus 1157 Y~e~~~e------~~~~qaAe~fE~~G~y~eAAelY~kag 1190 (1939)
+.+..+. ..+...|..|...|+|++|..+|.++-
T Consensus 370 ~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 370 YSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 7665443 227788899999999999998887653
No 334
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=92.60 E-value=0.4 Score=52.58 Aligned_cols=84 Identities=17% Similarity=0.206 Sum_probs=61.0
Q ss_pred cCCHHHHHHhhcCCCCCCcccccccCHHHHhhhcc---CCcEEEecCCCChHHHHHHHHHHHHhHhhhhhhcccccCCCc
Q 035724 695 SLSSGAVSHLLSDRDGGELDLPFEVTDEQLEMILF---PKSSFILGRSGTGKTTILTMKLFQKEKLHHMAMDGFYGVNNS 771 (1939)
Q Consensus 695 ~~s~~~~~~il~~~~~~~~d~pf~l~~ee~~iI~~---p~~~~vlGrSGTGKTT~~L~kl~~~e~~~~~~~~~~~~~~~~ 771 (1939)
.+++.+++.+-.. | + -+++|-|++++.. ...++|.+..|||||.+.+.-++.. .. .
T Consensus 9 ~l~~~l~~~l~~~--g----~-~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~------~~----~---- 67 (206)
T 1vec_A 9 CLKRELLMGIFEM--G----W-EKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER------LD----L---- 67 (206)
T ss_dssp CCCHHHHHHHHTT--T----C-CSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHH------CC----T----
T ss_pred CCCHHHHHHHHHC--C----C-CCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHH------hc----c----
Confidence 5778888777542 2 1 2689999999874 5689999999999999988777665 10 0
Q ss_pred cccccccccCccCCCCcccccceeEEEEecCHHHHHHHHHHHHHHH
Q 035724 772 VTLHSSWESGAEEGLGETERPILRQLFVTVSPKLCFAVKQHISQMI 817 (1939)
Q Consensus 772 ~~~~~~~~~~~~~~~g~~~~~~l~qvfVT~S~~L~~~vk~~~~~l~ 817 (1939)
.....+.|+++-+..|+.++.+.+.++.
T Consensus 68 ------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 95 (206)
T 1vec_A 68 ------------------KKDNIQAMVIVPTRELALQVSQICIQVS 95 (206)
T ss_dssp ------------------TSCSCCEEEECSCHHHHHHHHHHHHHHT
T ss_pred ------------------cCCCeeEEEEeCcHHHHHHHHHHHHHHH
Confidence 0112469999999999998877666653
No 335
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=92.51 E-value=0.54 Score=47.65 Aligned_cols=94 Identities=11% Similarity=0.049 Sum_probs=66.5
Q ss_pred CCchHhHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC---
Q 035724 1115 SNPKQANVNLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF--- 1191 (1939)
Q Consensus 1115 ~~~~ea~~~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd--- 1191 (1939)
.+|+.+. .+.+.+..|.+.|++++|+++|.++ .++ .-.....+...|.++...|++++|.+.|.++-+
T Consensus 8 inP~~a~-~~~~~G~~~~~~g~~~~A~~~~~~a------l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 78 (126)
T 4gco_A 8 INPELAQ-EEKNKGNEYFKKGDYPTAMRHYNEA------VKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS 78 (126)
T ss_dssp CCHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHH------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HCHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHH------HHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh
Confidence 3565433 4567788888899999998888654 333 001223477889999999999999999998722
Q ss_pred -----HHHHHHHHHhcCChHHHHHHHHhhhh
Q 035724 1192 -----FSECLAVCSKGKLFEIGLQYMNHWKQ 1217 (1939)
Q Consensus 1192 -----~dkAI~my~k~k~fd~airLv~q~~d 1217 (1939)
+-.-..++.+.+++++|+...++--+
T Consensus 79 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 79 KFIKGYIRKAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22233467788999999988875444
No 336
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=92.42 E-value=0.16 Score=61.82 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=27.5
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHh-cCCcEEEEcc
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCF-TKASLIFCTA 265 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l-~~a~vI~~T~ 265 (1939)
..+++|.||||+|||+++..++..+. ....+++.++
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 57899999999999999988885543 3445665544
No 337
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=92.39 E-value=0.19 Score=69.05 Aligned_cols=44 Identities=23% Similarity=0.258 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHhcccCC-------CCCcEEEEeCCCCCchhHHHHHHH
Q 035724 208 TLNDSQAQAVLSCLRRTHCD-------HKATVELIWGPPGTGKTKTVSMLL 251 (1939)
Q Consensus 208 ~LN~sQ~~AV~~~L~~~~~~-------~~~~v~LI~GPPGTGKTtti~~li 251 (1939)
.+.+.|..||..++...... ....-.+|+.|.|||||.++..++
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~ 321 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAA 321 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHH
Confidence 47899999999998732100 011346999999999999986555
No 338
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.28 E-value=0.13 Score=74.18 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=28.8
Q ss_pred CcEEEEeCCCCCchhHHHHHHHH-HHhcCCcEEEEccc
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLD-FCFTKASLIFCTAS 266 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~-~~l~~a~vI~~T~s 266 (1939)
....+|.||||||||+++.+++. .+.+..++++.++.
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 1464 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 57889999999999999988874 44455677776544
No 339
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=92.26 E-value=0.52 Score=51.59 Aligned_cols=86 Identities=20% Similarity=0.236 Sum_probs=60.9
Q ss_pred cCCHHHHHHhhcCCCCCCcccccccCHHHHhhhcc---CCcEEEecCCCChHHHHHHHHHHHHhHhhhhhhcccccCCCc
Q 035724 695 SLSSGAVSHLLSDRDGGELDLPFEVTDEQLEMILF---PKSSFILGRSGTGKTTILTMKLFQKEKLHHMAMDGFYGVNNS 771 (1939)
Q Consensus 695 ~~s~~~~~~il~~~~~~~~d~pf~l~~ee~~iI~~---p~~~~vlGrSGTGKTT~~L~kl~~~e~~~~~~~~~~~~~~~~ 771 (1939)
.+++.+++.+-.. | ...++|-|++++.. ...++|.+..|||||++++.-++.. +.+.
T Consensus 7 ~l~~~l~~~l~~~--~-----~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~------l~~~------- 66 (207)
T 2gxq_A 7 PLKPEILEALHGR--G-----LTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAER------LAPS------- 66 (207)
T ss_dssp CCCHHHHHHHHHT--T-----CCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHH------CCCC-------
T ss_pred CCCHHHHHHHHHc--C-----CCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHH------Hhhc-------
Confidence 5777777776542 2 23689999999974 5679999999999999988777765 1100
Q ss_pred cccccccccCccCCCCcccccceeEEEEecCHHHHHHHHHHHHHH
Q 035724 772 VTLHSSWESGAEEGLGETERPILRQLFVTVSPKLCFAVKQHISQM 816 (1939)
Q Consensus 772 ~~~~~~~~~~~~~~~g~~~~~~l~qvfVT~S~~L~~~vk~~~~~l 816 (1939)
. ......+.++++=+..|+.++.+.+.++
T Consensus 67 --------~--------~~~~~~~~lil~P~~~L~~q~~~~~~~~ 95 (207)
T 2gxq_A 67 --------Q--------ERGRKPRALVLTPTRELALQVASELTAV 95 (207)
T ss_dssp --------C--------CTTCCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred --------c--------ccCCCCcEEEEECCHHHHHHHHHHHHHH
Confidence 0 0012356899999999998886666554
No 340
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=92.19 E-value=0.091 Score=72.64 Aligned_cols=33 Identities=24% Similarity=0.110 Sum_probs=26.9
Q ss_pred CCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHH
Q 035724 208 TLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVS 248 (1939)
Q Consensus 208 ~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~ 248 (1939)
.+ +.|.+|+..++.. .-.++.||.|||||....
T Consensus 57 ~p-~iQ~~ai~~il~g-------~dvlv~apTGSGKTl~~l 89 (1054)
T 1gku_B 57 PR-AIQKMWAKRILRK-------ESFAATAPTGVGKTSFGL 89 (1054)
T ss_dssp CC-HHHHHHHHHHHTT-------CCEECCCCBTSCSHHHHH
T ss_pred CH-HHHHHHHHHHHhC-------CCEEEEcCCCCCHHHHHH
Confidence 36 9999999999973 346999999999997433
No 341
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.16 E-value=0.26 Score=58.45 Aligned_cols=36 Identities=25% Similarity=0.491 Sum_probs=27.8
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHh--cCCcEEEEc
Q 035724 229 KATVELIWGPPGTGKTKTVSMLLDFCF--TKASLIFCT 264 (1939)
Q Consensus 229 ~~~v~LI~GPPGTGKTtti~~li~~~l--~~a~vI~~T 264 (1939)
.+.+.+|.||+|+|||||+..++..+. .+.+|.+.+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 356889999999999999999986654 344666653
No 342
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.07 E-value=0.056 Score=72.08 Aligned_cols=80 Identities=19% Similarity=0.255 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHhccc---------CCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEccc---------chhh
Q 035724 209 LNDSQAQAVLSCLRRTH---------CDHKATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTAS---------SSYK 270 (1939)
Q Consensus 209 LN~sQ~~AV~~~L~~~~---------~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~s---------ss~~ 270 (1939)
.-+..++.+..++.... ....+.=.|++||||||||.++.+++..+ +...+....+ +...
T Consensus 481 gl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~--~~~f~~v~~~~l~s~~vGese~~ 558 (806)
T 3cf2_A 481 GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC--QANFISIKGPELLTMWFGESEAN 558 (806)
T ss_dssp SCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT--TCEEEECCHHHHHTTTCSSCHHH
T ss_pred CHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh--CCceEEeccchhhccccchHHHH
Confidence 34566666665554220 11112225999999999999998887554 2233322111 1111
Q ss_pred HHh----hhccCCcEEEEeCCccc
Q 035724 271 LHR----VAMEQLKFLVIDEAAQL 290 (1939)
Q Consensus 271 l~~----l~~~~fdvVIIDEASQ~ 290 (1939)
+.. .+...+.+|+|||+-.+
T Consensus 559 vr~lF~~Ar~~~P~IifiDEiDsl 582 (806)
T 3cf2_A 559 VREIFDKARQAAPCVLFFDELDSI 582 (806)
T ss_dssp HHHHHHHHHTTCSEEEECSCGGGC
T ss_pred HHHHHHHHHHcCCceeechhhhHH
Confidence 111 12345689999998754
No 343
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=92.07 E-value=0.15 Score=61.88 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=26.1
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHhc-CCcEEEE
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCFT-KASLIFC 263 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l~-~a~vI~~ 263 (1939)
..+++|.||||+||||++..++..+.. ...+++.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyI 95 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFI 95 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 579999999999999999888855443 3445444
No 344
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=92.05 E-value=0.34 Score=51.05 Aligned_cols=98 Identities=12% Similarity=0.166 Sum_probs=66.4
Q ss_pred cCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHH-HHHcCCH--H
Q 035724 1062 ASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKI-FEAIGKA--D 1138 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~l-Ye~~G~~--~ 1138 (1939)
...+..|..+|..++..++|+.|+.+|.++-... |.. ...+...+.. |...|++ +
T Consensus 41 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---------------------p~~-~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 41 PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR---------------------GEN-AELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------------CSC-HHHHHHHHHHHHHHTTTCCCH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------------------CCC-HHHHHHHHHHHHHhcCCcchH
Confidence 4577899999999999999999999999863200 111 1234556666 7788887 8
Q ss_pred HHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 035724 1139 SAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKG 1189 (1939)
Q Consensus 1139 kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~ka 1189 (1939)
+|+++|.++- ++.- .....+...|.++...|++++|.+.|.++
T Consensus 99 ~A~~~~~~al------~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~a 141 (177)
T 2e2e_A 99 QTRAMIDKAL------ALDS--NEITALMLLASDAFMQANYAQAIELWQKV 141 (177)
T ss_dssp HHHHHHHHHH------HHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH------HhCC--CcHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 8877765432 2210 11233556677888888888888877664
No 345
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=91.95 E-value=1.6 Score=44.58 Aligned_cols=87 Identities=13% Similarity=0.079 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC--------HHH
Q 035724 1123 NLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF--------FSE 1194 (1939)
Q Consensus 1123 ~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd--------~dk 1194 (1939)
.+...|..|...|++++|+++|.++-. +.. .....+...|.++...|+|.+|.++|.++-. +-.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~------~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 86 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIE------LNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR 86 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH------HST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH------hCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 466777778888888888777765432 100 1123466789999999999999999988722 223
Q ss_pred HHHHHHhcCChHHHHHHHHhhhh
Q 035724 1195 CLAVCSKGKLFEIGLQYMNHWKQ 1217 (1939)
Q Consensus 1195 AI~my~k~k~fd~airLv~q~~d 1217 (1939)
...++.+.+++++|+...++..+
T Consensus 87 ~a~~~~~~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 87 RAASNMALGKFRAALRDYETVVK 109 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 34467788889988888875433
No 346
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=91.94 E-value=0.67 Score=57.69 Aligned_cols=101 Identities=14% Similarity=-0.019 Sum_probs=67.3
Q ss_pred HHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHHHHhCC
Q 035724 1070 SRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCFYNLGE 1149 (1939)
Q Consensus 1070 ~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy~kag~ 1149 (1939)
.....+..+++|++|+..|+++-.... ..+...++. ....+..+|..|...|++++|+.+|.
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~-------------~~lg~~h~~-~~~~~~~L~~~y~~~g~~~eA~~~~~---- 353 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNS-------------ERLPDINIY-QLKVLDCAMDACINLGLLEEALFYGT---- 353 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSS-------------CCCCTTSHH-HHHHHHHHHHHHHHHTCHHHHHHHHH----
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhcc-------------CcCCccchH-HHHHHHHHHHHHHhhccHHHHHHHHH----
Confidence 334556677899999999987633111 001111222 23457789999999999999988765
Q ss_pred HHHHHHHHHHhcCh------HHHHHHHHHHHHcCCHHHHHHHHHHcc
Q 035724 1150 YERAGRIYLERREE------PELEKAGECFFLAGCYKLAADVYAKGK 1190 (1939)
Q Consensus 1150 ~~~A~eLY~e~~~e------~~~~qaAe~fE~~G~y~eAAelY~kag 1190 (1939)
++.++|.+..+. ..+...|..+...|+|++|..+|.++-
T Consensus 354 --~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 354 --RTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp --HHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --HHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 556777665443 226777888888888888888876653
No 347
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=91.93 E-value=0.21 Score=67.04 Aligned_cols=43 Identities=16% Similarity=0.085 Sum_probs=32.2
Q ss_pred CCCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHH
Q 035724 206 SSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLL 251 (1939)
Q Consensus 206 ~~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li 251 (1939)
+..|-+.|.++|..++.... + ..=.+|.-+.|+|||.++.+++
T Consensus 234 ~~~Lr~yQ~egv~~l~~~~~-~--~~~~ILademGlGKT~~ai~~i 276 (800)
T 3mwy_W 234 GGELRDFQLTGINWMAFLWS-K--GDNGILADEMGLGKTVQTVAFI 276 (800)
T ss_dssp SSCCCTHHHHHHHHHHHHHT-T--TCCEEECCCTTSSTTHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhh-c--CCCEEEEeCCCcchHHHHHHHH
Confidence 46799999999987764221 1 2235899999999998887666
No 348
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=91.69 E-value=0.073 Score=62.28 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.6
Q ss_pred EEEeCCCCCchhHHHHHHHHHH
Q 035724 233 ELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 233 ~LI~GPPGTGKTtti~~li~~~ 254 (1939)
.+|.|||||||||++..+...+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHc
Confidence 7999999999999999887654
No 349
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=91.33 E-value=1 Score=47.65 Aligned_cols=95 Identities=13% Similarity=-0.020 Sum_probs=66.4
Q ss_pred hcCCchHhHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC-
Q 035724 1113 RSSNPKQANVNLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF- 1191 (1939)
Q Consensus 1113 ~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd- 1191 (1939)
...+|... ..+...|..|.+.|++++|+++|.++ .++ .--....|...|.++...|+|++|.++|.++-.
T Consensus 29 l~l~p~~~-~~~~~lg~~~~~~g~~~eA~~~~~~a------l~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l 99 (151)
T 3gyz_A 29 NAIPDDMM-DDIYSYAYDFYNKGRIEEAEVFFRFL------CIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL 99 (151)
T ss_dssp CCSCHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHH------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCCCHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHH------HHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 33455543 34566677888889999998887754 222 001123477789999999999999999999822
Q ss_pred -------HHHHHHHHHhcCChHHHHHHHHhhh
Q 035724 1192 -------FSECLAVCSKGKLFEIGLQYMNHWK 1216 (1939)
Q Consensus 1192 -------~dkAI~my~k~k~fd~airLv~q~~ 1216 (1939)
+-..-.+|.+.|++++|+...++--
T Consensus 100 ~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 100 GKNDYTPVFHTGQCQLRLKAPLKAKECFELVI 131 (151)
T ss_dssp SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2333457788999999998887533
No 350
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=91.22 E-value=2 Score=49.70 Aligned_cols=60 Identities=8% Similarity=-0.129 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q 035724 1123 NLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGK 1190 (1939)
Q Consensus 1123 ~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kag 1190 (1939)
.+...|..+...|++++|++.|.++- ++.- -....+...|..+...|++++|.++|.++-
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al------~~~P--~~~~a~~~la~~~~~~g~~~~A~~~l~~~~ 178 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAW------QLSN--QNGEIGLLLAETLIALNRSEDAEAVLXTIP 178 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH------HHTT--SCHHHHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHH------HhCC--cchhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 34567777888888888877766542 2100 111235566889999999999999999873
No 351
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=91.17 E-value=0.43 Score=54.10 Aligned_cols=71 Identities=14% Similarity=0.145 Sum_probs=49.1
Q ss_pred cccccCHHHHhhhcc---CCcEEEecCCCChHHHHHHHHHHHHhHhhhhhhcccccCCCccccccccccCccCCCCcccc
Q 035724 715 LPFEVTDEQLEMILF---PKSSFILGRSGTGKTTILTMKLFQKEKLHHMAMDGFYGVNNSVTLHSSWESGAEEGLGETER 791 (1939)
Q Consensus 715 ~pf~l~~ee~~iI~~---p~~~~vlGrSGTGKTT~~L~kl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 791 (1939)
.++.+++.|+++|.. ...++|.|.+||||||++..-++.. . ...+ ..
T Consensus 58 ~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~--~---~~~~-------------------------~~ 107 (235)
T 3llm_A 58 ELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDD--F---IQND-------------------------RA 107 (235)
T ss_dssp HTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHH--H---HHTT-------------------------CG
T ss_pred hcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcc--h---hhcC-------------------------CC
Confidence 456789999999874 5568999999999999765444432 1 1000 01
Q ss_pred cceeEEEEecCHHHHHHHHHHHHH
Q 035724 792 PILRQLFVTVSPKLCFAVKQHISQ 815 (1939)
Q Consensus 792 ~~l~qvfVT~S~~L~~~vk~~~~~ 815 (1939)
.....+|+.-...|+.++.+.+..
T Consensus 108 ~~~~~l~~~p~~~la~q~~~~~~~ 131 (235)
T 3llm_A 108 AECNIVVTQPRRISAVSVAERVAF 131 (235)
T ss_dssp GGCEEEEEESSHHHHHHHHHHHHH
T ss_pred CceEEEEeccchHHHHHHHHHHHH
Confidence 234678888888999988666654
No 352
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=91.14 E-value=0.56 Score=53.08 Aligned_cols=87 Identities=16% Similarity=0.298 Sum_probs=63.2
Q ss_pred hhccCCHHHHHHhhcCCCCCCcccccccCHHHHhhhcc---CCcEEEecCCCChHHHHHHHHHHHHhHhhhhhhcccccC
Q 035724 692 KFYSLSSGAVSHLLSDRDGGELDLPFEVTDEQLEMILF---PKSSFILGRSGTGKTTILTMKLFQKEKLHHMAMDGFYGV 768 (1939)
Q Consensus 692 Kf~~~s~~~~~~il~~~~~~~~d~pf~l~~ee~~iI~~---p~~~~vlGrSGTGKTT~~L~kl~~~e~~~~~~~~~~~~~ 768 (1939)
+-+.+++.+++.+... | + -.++|-|.++|.. ...+++.+..|||||.+.+.-++.. +.+.
T Consensus 32 ~~~~l~~~l~~~l~~~--g----~-~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~------l~~~---- 94 (245)
T 3dkp_A 32 QEYKINSRLLQNILDA--G----F-QMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQ------LKQP---- 94 (245)
T ss_dssp HHHCCCHHHHHHHHHT--T----C-CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHH------HCSC----
T ss_pred hccCCCHHHHHHHHHC--C----C-CCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHH------Hhhc----
Confidence 4457888888887653 2 1 2489999999873 5679999999999999988777665 1100
Q ss_pred CCccccccccccCccCCCCcccccceeEEEEecCHHHHHHHHHHHHHH
Q 035724 769 NNSVTLHSSWESGAEEGLGETERPILRQLFVTVSPKLCFAVKQHISQM 816 (1939)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~g~~~~~~l~qvfVT~S~~L~~~vk~~~~~l 816 (1939)
.....+.||++=...|+.++.+.+.++
T Consensus 95 ---------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~ 121 (245)
T 3dkp_A 95 ---------------------ANKGFRALIISPTRELASQIHRELIKI 121 (245)
T ss_dssp ---------------------CSSSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred ---------------------ccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 011246899999999999987766654
No 353
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=91.12 E-value=0.23 Score=59.96 Aligned_cols=38 Identities=21% Similarity=0.217 Sum_probs=28.4
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHhc-------CCcEEEEccc
Q 035724 229 KATVELIWGPPGTGKTKTVSMLLDFCFT-------KASLIFCTAS 266 (1939)
Q Consensus 229 ~~~v~LI~GPPGTGKTtti~~li~~~l~-------~a~vI~~T~s 266 (1939)
...+++|.||||+|||+++..++..+.. ...+++.++.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E 165 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTE 165 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 3679999999999999999988866432 4456555443
No 354
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=91.11 E-value=0.27 Score=60.01 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=27.7
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHh-cCCcEEEEcc
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCF-TKASLIFCTA 265 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l-~~a~vI~~T~ 265 (1939)
..+++|.||||+|||+++..++..+. ....+++.++
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~ 110 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDA 110 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEEC
Confidence 57899999999999999988885554 3456666544
No 355
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.10 E-value=0.16 Score=59.72 Aligned_cols=26 Identities=35% Similarity=0.484 Sum_probs=22.1
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 229 KATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 229 ~~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
.+.+.+|.||||+||||++..+.+.+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999887654
No 356
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=91.06 E-value=0.21 Score=59.70 Aligned_cols=115 Identities=17% Similarity=0.060 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHH
Q 035724 1065 PEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCF 1144 (1939)
Q Consensus 1065 peeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy 1144 (1939)
...|+.+|..++..++|+.|+.+|.+|-........ +.......... .......|...|..|.+.|++++|+++|
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~~~~~~~~~~~---~~l~~~~~~nla~~~~~~g~~~~A~~~~ 253 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--FQLYGKYQDMA---LAVKNPCHLNIAACLIKLKRYDEAIGHC 253 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--HTCCHHHHHHH---HHHHTHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--hhhcccHHHHH---HHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 357899999999999999999999997432111110 00000000000 0001124555666666666666666655
Q ss_pred HHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccCH
Q 035724 1145 YNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKFF 1192 (1939)
Q Consensus 1145 ~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd~ 1192 (1939)
.++ .++.- -....+-..|.++...|+|++|.+.|.++-..
T Consensus 254 ~~a------l~~~p--~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 254 NIV------LTEEE--KNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHH------HHHCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HHH------HHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 443 22200 11234667788888899999999888887543
No 357
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=91.03 E-value=0.36 Score=61.94 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHH
Q 035724 208 TLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTV 247 (1939)
Q Consensus 208 ~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti 247 (1939)
.+-+.|.+++..+..+... ..-.+|+.|+|||||...
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~---~~~~~~~a~TGtGKT~~~ 39 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRN---NFLVALNAPTGSGKTLFS 39 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHT---TCEEEEECCTTSSHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHc---CCcEEEECCCCccHHHHH
Confidence 4568899976665543211 356799999999997654
No 358
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=91.01 E-value=1 Score=53.00 Aligned_cols=124 Identities=10% Similarity=-0.041 Sum_probs=78.6
Q ss_pred cCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHH
Q 035724 1062 ASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAA 1141 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAa 1141 (1939)
.+..+-+...|..+...++|++|..+|..+-.. .|... ..| -.+-+|.+.|+++.|+
T Consensus 99 ~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---------------------~p~~~-~~~-~~a~l~~~~~r~~dA~ 155 (282)
T 4f3v_A 99 TSPLAITMGFAACEAAQGNYADAMEALEAAPVA---------------------GSEHL-VAW-MKAVVYGAAERWTDVI 155 (282)
T ss_dssp SSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---------------------TCHHH-HHH-HHHHHHHHTTCHHHHH
T ss_pred CCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------------------CCchH-HHH-HHHHHHHHcCCHHHHH
Confidence 445677888999999999999999999876431 12211 222 3334777777888887
Q ss_pred HHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHcc--C-----H-HHHH---HHHHhcCChHHHHH
Q 035724 1142 KCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGK--F-----F-SECL---AVCSKGKLFEIGLQ 1210 (1939)
Q Consensus 1142 ecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kag--d-----~-dkAI---~my~k~k~fd~air 1210 (1939)
.+|..+..+..-. + ....+-..|..++..|++++|.+.|.++. . . +..+ .++.+.|..++|..
T Consensus 156 ~~l~~a~~~~d~~--~----~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~ 229 (282)
T 4f3v_A 156 DQVKSAGKWPDKF--L----AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVA 229 (282)
T ss_dssp HHHTTGGGCSCHH--H----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhhccCCcc--c----HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHH
Confidence 7776665432000 0 00112334788888889999988888872 2 1 1111 25566777788887
Q ss_pred HHHh
Q 035724 1211 YMNH 1214 (1939)
Q Consensus 1211 Lv~q 1214 (1939)
+.++
T Consensus 230 ~l~~ 233 (282)
T 4f3v_A 230 LLEW 233 (282)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7774
No 359
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=91.00 E-value=0.61 Score=51.18 Aligned_cols=55 Identities=16% Similarity=0.279 Sum_probs=42.3
Q ss_pred HHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 035724 1071 RGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCFYNL 1147 (1939)
Q Consensus 1071 lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy~ka 1147 (1939)
+|..+...++|++|+.+|.++-.. +|. ....+...+.+|...|++++|+++|.++
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~---------------------~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~a 114 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQK---------------------APN-NVDCLEACAEMQVCRGQEKDALRMYEKI 114 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---------------------CTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH---------------------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999986220 122 2334667788888899999998887664
No 360
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=91.00 E-value=0.55 Score=52.58 Aligned_cols=90 Identities=18% Similarity=0.195 Sum_probs=61.3
Q ss_pred ccCCHHHHHHhhcCCCCCCcccccccCHHHHhhhcc---CCcEEEecCCCChHHHHHHHHHHHHhHhhhhhhcccccCCC
Q 035724 694 YSLSSGAVSHLLSDRDGGELDLPFEVTDEQLEMILF---PKSSFILGRSGTGKTTILTMKLFQKEKLHHMAMDGFYGVNN 770 (1939)
Q Consensus 694 ~~~s~~~~~~il~~~~~~~~d~pf~l~~ee~~iI~~---p~~~~vlGrSGTGKTT~~L~kl~~~e~~~~~~~~~~~~~~~ 770 (1939)
+.+++.+++.|-.. | -.+++|-|.++|.. ...+++.+..|||||.+.+.-++.. ...+...
T Consensus 25 ~~l~~~l~~~l~~~--g-----~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~-----l~~~~~~---- 88 (228)
T 3iuy_A 25 FQQYPDLLKSIIRV--G-----ILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIH-----LDSQPIS---- 88 (228)
T ss_dssp HTTCHHHHHHHHHH--T-----CCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHH-----HC---------
T ss_pred hccCHHHHHHHHHC--C-----CCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHH-----HHhccch----
Confidence 45777787777652 2 12689999999874 6689999999999999988776654 1100000
Q ss_pred ccccccccccCccCCCCcccccceeEEEEecCHHHHHHHHHHHHHH
Q 035724 771 SVTLHSSWESGAEEGLGETERPILRQLFVTVSPKLCFAVKQHISQM 816 (1939)
Q Consensus 771 ~~~~~~~~~~~~~~~~g~~~~~~l~qvfVT~S~~L~~~vk~~~~~l 816 (1939)
.......+.||++=...||.++.+.+.++
T Consensus 89 -----------------~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 117 (228)
T 3iuy_A 89 -----------------REQRNGPGMLVLTPTRELALHVEAECSKY 117 (228)
T ss_dssp ---------------------CCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred -----------------hhccCCCcEEEEeCCHHHHHHHHHHHHHh
Confidence 00112356899999999999887766665
No 361
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=90.81 E-value=0.78 Score=50.91 Aligned_cols=83 Identities=18% Similarity=0.245 Sum_probs=61.3
Q ss_pred cCCHHHHHHhhcCCCCCCcccccc-cCHHHHhhhcc---CCcEEEecCCCChHHHHHHHHHHHHhHhhhhhhcccccCCC
Q 035724 695 SLSSGAVSHLLSDRDGGELDLPFE-VTDEQLEMILF---PKSSFILGRSGTGKTTILTMKLFQKEKLHHMAMDGFYGVNN 770 (1939)
Q Consensus 695 ~~s~~~~~~il~~~~~~~~d~pf~-l~~ee~~iI~~---p~~~~vlGrSGTGKTT~~L~kl~~~e~~~~~~~~~~~~~~~ 770 (1939)
.++..+++.+-.. .|. ++|-|.+++.. ...+++.+..|||||.+.+.=++.. +..
T Consensus 20 ~l~~~l~~~l~~~--------g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~------~~~------- 78 (220)
T 1t6n_A 20 LLKPELLRAIVDC--------GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ------LEP------- 78 (220)
T ss_dssp CCCHHHHHHHHHT--------TCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHH------CCC-------
T ss_pred CCCHHHHHHHHHC--------CCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHh------hhc-------
Confidence 5788888877552 233 89999999874 5679999999999999998777665 100
Q ss_pred ccccccccccCccCCCCcccccceeEEEEecCHHHHHHHHHHHHHHH
Q 035724 771 SVTLHSSWESGAEEGLGETERPILRQLFVTVSPKLCFAVKQHISQMI 817 (1939)
Q Consensus 771 ~~~~~~~~~~~~~~~~g~~~~~~l~qvfVT~S~~L~~~vk~~~~~l~ 817 (1939)
.....+.|+++-+..|+.++.+.+.++.
T Consensus 79 -------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 106 (220)
T 1t6n_A 79 -------------------VTGQVSVLVMCHTRELAFQISKEYERFS 106 (220)
T ss_dssp -------------------CTTCCCEEEECSCHHHHHHHHHHHHHHT
T ss_pred -------------------cCCCEEEEEEeCCHHHHHHHHHHHHHHH
Confidence 0112468999999999999877666654
No 362
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=90.76 E-value=0.48 Score=62.06 Aligned_cols=49 Identities=18% Similarity=0.038 Sum_probs=34.4
Q ss_pred CCCCCHHHHHHHHHHHhcccCC--CCCcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 206 SSTLNDSQAQAVLSCLRRTHCD--HKATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 206 ~~~LN~sQ~~AV~~~L~~~~~~--~~~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
...|-+.|+++|..+....... ....=.++.-+.|+|||.++..++..+
T Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l 103 (644)
T 1z3i_X 53 SKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTL 103 (644)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHH
T ss_pred hhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHH
Confidence 3578899999999887532110 112335889999999999887777443
No 363
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=90.65 E-value=0.29 Score=58.45 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=27.1
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHhc---CCcEEEEcc
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCFT---KASLIFCTA 265 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l~---~a~vI~~T~ 265 (1939)
+.+++|.||||+||||++..++..+.+ ...++..++
T Consensus 28 ~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~ 66 (333)
T 3io5_A 28 SGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDS 66 (333)
T ss_dssp SEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 348999999999999998888765554 456666544
No 364
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=90.62 E-value=0.41 Score=59.76 Aligned_cols=35 Identities=31% Similarity=0.423 Sum_probs=26.7
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHhc--CCcEEEEc
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCFT--KASLIFCT 264 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l~--~a~vI~~T 264 (1939)
+.+.+|.|++|+|||||+..++..+-. +.+|.+..
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd 136 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVS 136 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 457778899999999999999866543 45666543
No 365
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=90.61 E-value=0.12 Score=55.20 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=19.6
Q ss_pred cEEEEeCCCCCchhHHHHHHHH
Q 035724 231 TVELIWGPPGTGKTKTVSMLLD 252 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~ 252 (1939)
.+.+|.||||+||||++..+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4679999999999999988875
No 366
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.46 E-value=0.15 Score=68.60 Aligned_cols=60 Identities=23% Similarity=0.361 Sum_probs=35.5
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccc---------hhhHH----hhhccCCcEEEEeCCcccc
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASS---------SYKLH----RVAMEQLKFLVIDEAAQLK 291 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~ss---------s~~l~----~l~~~~fdvVIIDEASQ~~ 291 (1939)
+...+|+||||||||+++..+...+ ....+...+.. ..... ......+.++++||+..+.
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~~l--~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~ 310 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVANET--GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIA 310 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHHTT--TCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTS
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc--CCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhh
Confidence 4457999999999999998886543 22233221110 00111 1122456899999987554
No 367
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=90.37 E-value=1.2 Score=43.42 Aligned_cols=88 Identities=9% Similarity=0.053 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC--------
Q 035724 1120 ANVNLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF-------- 1191 (1939)
Q Consensus 1120 a~~~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd-------- 1191 (1939)
....+...|..|...|++++|+++|.++-.... .....+...|.++...|++++|.++|.++-.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 86 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP--------KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKG 86 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT--------TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--------CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHH
Confidence 345677888888999999999888876542210 0123366778999999999999999988732
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhh
Q 035724 1192 FSECLAVCSKGKLFEIGLQYMNHW 1215 (1939)
Q Consensus 1192 ~dkAI~my~k~k~fd~airLv~q~ 1215 (1939)
+-....++.+.+++++|+...++.
T Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~ 110 (133)
T 2lni_A 87 YTRKAAALEAMKDYTKAMDVYQKA 110 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 222344677888899888888753
No 368
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=90.37 E-value=1 Score=44.60 Aligned_cols=84 Identities=10% Similarity=0.009 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC--------HHH
Q 035724 1123 NLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF--------FSE 1194 (1939)
Q Consensus 1123 ~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd--------~dk 1194 (1939)
.+...|..|.+.|++++|+++|.++ .++.- .....+...|.++...|+|++|.+.|.++-. +-.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~a------l~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 77 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEM------IKRAP--EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIR 77 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH------HHhCC--CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 4566777777888888887777654 22210 1123477889999999999999999988722 222
Q ss_pred HHHHHHhcCChHHHHHHHHh
Q 035724 1195 CLAVCSKGKLFEIGLQYMNH 1214 (1939)
Q Consensus 1195 AI~my~k~k~fd~airLv~q 1214 (1939)
...++...+++++|+...++
T Consensus 78 lg~~~~~~~~~~~A~~~~~~ 97 (126)
T 3upv_A 78 KATAQIAVKEYASALETLDA 97 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHH
Confidence 33467788889988888774
No 369
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=90.28 E-value=0.15 Score=54.78 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=21.3
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
+.+.+|.||||+||||++..+.+.+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3577999999999999999887654
No 370
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=90.20 E-value=0.13 Score=54.24 Aligned_cols=20 Identities=45% Similarity=0.708 Sum_probs=17.8
Q ss_pred cEEEEeCCCCCchhHHHHHH
Q 035724 231 TVELIWGPPGTGKTKTVSML 250 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~l 250 (1939)
.+.+|.||||+||||++..+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36789999999999999887
No 371
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=90.17 E-value=1.1 Score=46.67 Aligned_cols=89 Identities=10% Similarity=-0.049 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC--------H
Q 035724 1121 NVNLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF--------F 1192 (1939)
Q Consensus 1121 ~~~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd--------~ 1192 (1939)
...+...+..|...|++++|+++|.++- ++.- .....+...|.++...|+|++|.+.|.++-. +
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al------~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 82 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQAL------SIAP--ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAW 82 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH------HhCC--cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence 3456778888888899999988886543 2210 1123467789999999999999999998722 2
Q ss_pred HHHHHHHHhcCChHHHHHHHHhhhh
Q 035724 1193 SECLAVCSKGKLFEIGLQYMNHWKQ 1217 (1939)
Q Consensus 1193 dkAI~my~k~k~fd~airLv~q~~d 1217 (1939)
-....+|.+.+++++|+...++.-+
T Consensus 83 ~~lg~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 83 SRLGLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3344567788999999888875443
No 372
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=90.12 E-value=0.12 Score=55.86 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=16.1
Q ss_pred CCcEEEecCCCChHHHHHH
Q 035724 730 PKSSFILGRSGTGKTTILT 748 (1939)
Q Consensus 730 p~~~~vlGrSGTGKTT~~L 748 (1939)
+..+++.|.+||||||++-
T Consensus 38 g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp CCEEEECCSSSSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3568999999999999864
No 373
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=90.11 E-value=0.17 Score=53.73 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=19.8
Q ss_pred EEEEeCCCCCchhHHHHHHHHHH
Q 035724 232 VELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 232 v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
+.+|.||||+||||++..+.+.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 56899999999999999887554
No 374
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=90.11 E-value=1 Score=45.42 Aligned_cols=84 Identities=6% Similarity=0.016 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccCHH---------
Q 035724 1123 NLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKFFS--------- 1193 (1939)
Q Consensus 1123 ~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd~d--------- 1193 (1939)
.+.+.+..|.+.|++++|+++|.++ +++.- .....+...|.++...|+|++|.+.|.++-+.+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~A------l~~~p--~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 81 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKA------IELDP--SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKL 81 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH------HHhCC--CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHH
Confidence 4667888888899999998888654 33310 112346778999999999999999998873321
Q ss_pred ------HHHHHHHhcCChHHHHHHHHh
Q 035724 1194 ------ECLAVCSKGKLFEIGLQYMNH 1214 (1939)
Q Consensus 1194 ------kAI~my~k~k~fd~airLv~q 1214 (1939)
..-.++...++|++|++..++
T Consensus 82 ~a~~~~~lg~~~~~~~~~~~A~~~~~k 108 (127)
T 4gcn_A 82 IAKAMSRAGNAFQKQNDLSLAVQWFHR 108 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 112345667788877777653
No 375
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.08 E-value=0.38 Score=61.07 Aligned_cols=34 Identities=26% Similarity=0.255 Sum_probs=24.8
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHhc-CCcEEEE
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCFT-KASLIFC 263 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l~-~a~vI~~ 263 (1939)
+.+.+|.|+||+|||||+..|+..+.. ..+|.+.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllV 135 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLI 135 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 446788899999999999999865543 3455444
No 376
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=90.08 E-value=0.7 Score=52.24 Aligned_cols=82 Identities=20% Similarity=0.242 Sum_probs=59.4
Q ss_pred cCCHHHHHHhhcCCCCCCcccccc-cCHHHHhhhcc---CCcEEEecCCCChHHHHHHHHHHHHhHhhhhhhcccccCCC
Q 035724 695 SLSSGAVSHLLSDRDGGELDLPFE-VTDEQLEMILF---PKSSFILGRSGTGKTTILTMKLFQKEKLHHMAMDGFYGVNN 770 (1939)
Q Consensus 695 ~~s~~~~~~il~~~~~~~~d~pf~-l~~ee~~iI~~---p~~~~vlGrSGTGKTT~~L~kl~~~e~~~~~~~~~~~~~~~ 770 (1939)
.+++.+++.+-. +.|. ++|-|+++|.. ...++|.+..|||||.+.+.-++.. +..
T Consensus 36 ~l~~~l~~~l~~--------~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~------l~~------- 94 (237)
T 3bor_A 36 NLKESLLRGIYA--------YGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ------LEI------- 94 (237)
T ss_dssp CCCHHHHHHHHH--------HTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHH------CCT-------
T ss_pred CCCHHHHHHHHH--------CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHH------HHh-------
Confidence 578888777643 2233 89999999874 5689999999999999987777665 100
Q ss_pred ccccccccccCccCCCCcccccceeEEEEecCHHHHHHHHHHHHHH
Q 035724 771 SVTLHSSWESGAEEGLGETERPILRQLFVTVSPKLCFAVKQHISQM 816 (1939)
Q Consensus 771 ~~~~~~~~~~~~~~~~g~~~~~~l~qvfVT~S~~L~~~vk~~~~~l 816 (1939)
.....+.|+++-...|+.++.+.+.++
T Consensus 95 -------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~ 121 (237)
T 3bor_A 95 -------------------EFKETQALVLAPTRELAQQIQKVILAL 121 (237)
T ss_dssp -------------------TSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred -------------------cCCCceEEEEECcHHHHHHHHHHHHHH
Confidence 001245899999999999886666554
No 377
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=90.08 E-value=1.5 Score=42.23 Aligned_cols=63 Identities=16% Similarity=0.216 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHH
Q 035724 1063 SSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAK 1142 (1939)
Q Consensus 1063 StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAae 1142 (1939)
..+..|..+|..++..++|++|+.+|+++-.. +|. ....|...+..|...|++++|++
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------------------~p~-~~~a~~~lg~~~~~~g~~~~A~~ 62 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVET---------------------DPD-YVGTYYHLGKLYERLDRTDDAID 62 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------STT-CTHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------CCC-cHHHHHHHHHHHHHcCCHHHHHH
Confidence 46778999999999999999999999987220 122 12356778889999999999987
Q ss_pred HHHHh
Q 035724 1143 CFYNL 1147 (1939)
Q Consensus 1143 cy~ka 1147 (1939)
+|.++
T Consensus 63 ~~~~a 67 (100)
T 3ma5_A 63 TYAQG 67 (100)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 378
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=90.05 E-value=0.15 Score=55.52 Aligned_cols=24 Identities=29% Similarity=0.603 Sum_probs=20.6
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDF 253 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~ 253 (1939)
..+.+|.||||+||||++..|...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468899999999999999888643
No 379
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=89.78 E-value=0.058 Score=67.96 Aligned_cols=93 Identities=13% Similarity=0.098 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 035724 1067 EWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCFYN 1146 (1939)
Q Consensus 1067 eW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy~k 1146 (1939)
.|..+|..++.+++|++|+.+|++|-.. +|. ....+...|..|.+.|++++|+++|.+
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~---------------------~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~ 65 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIEL---------------------NPS-NAIYYGNRSLAYLRTECYGYALGDATR 65 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHH---------------------CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh---------------------CCc-cHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4666788888999999999999987321 122 133566788888888999888887765
Q ss_pred hCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 035724 1147 LGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKG 1189 (1939)
Q Consensus 1147 ag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~ka 1189 (1939)
+- ++.- .....+...|.++...|+|++|.++|.++
T Consensus 66 al------~l~p--~~~~~~~~lg~~~~~~g~~~eA~~~~~~a 100 (477)
T 1wao_1 66 AI------ELDK--KYIKGYYRRAASNMALGKFRAALRDYETV 100 (477)
T ss_dssp HH------HSCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HH------HhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 42 2200 11234667789999999999999999887
No 380
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=89.73 E-value=0.39 Score=58.73 Aligned_cols=27 Identities=30% Similarity=0.633 Sum_probs=23.4
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHhc
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCFT 256 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l~ 256 (1939)
..+.+|.||+|+||||++..++..+-.
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 578899999999999999999876543
No 381
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=89.63 E-value=0.00012 Score=90.20 Aligned_cols=221 Identities=13% Similarity=0.142 Sum_probs=138.8
Q ss_pred cCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCc-chHHHHHHhhh-------H---Hhhh--------------------
Q 035724 1062 ASSPEEWKSRGIKLFHEHNYDMATICFEKAKDS-YWEGRSKATGL-------K---ATAD-------------------- 1110 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~-~~~~l~kA~~l-------~---e~a~-------------------- 1110 (1939)
-.+|+-|.++|...+..+...+|+.+|+||+|. .+..+..+... . .-++
T Consensus 51 ~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~ 130 (624)
T 3lvg_A 51 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTN 130 (624)
T ss_dssp CCCCCCSSSHHHHTTTSSSCTTTTTSSCCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSC
T ss_pred hCCccHHHHHHHHHHccCchHHHHHHHHhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhC
Confidence 467889999999999999999999999999983 22233333210 0 0000
Q ss_pred ------hh-hc---CCchH------hHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHH
Q 035724 1111 ------RC-RS---SNPKQ------ANVNLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFF 1174 (1939)
Q Consensus 1111 ------~~-~s---~~~~e------a~~~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE 1174 (1939)
+. .. .+.+. ..+.|..|--+|..+..+.+=+.|+.++|+|..|++-.+++.....|++.....-
T Consensus 131 rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACv 210 (624)
T 3lvg_A 131 RLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACV 210 (624)
T ss_dssp SSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHH
T ss_pred cHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHh
Confidence 00 00 11110 1112444555666777787888888999999999998777555566999988899
Q ss_pred HcCCHHHHHHHH----HHccCHHHHHHHHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHH
Q 035724 1175 LAGCYKLAADVY----AKGKFFSECLAVCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKC 1250 (1939)
Q Consensus 1175 ~~G~y~eAAelY----~kagd~dkAI~my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~a 1250 (1939)
..++|+.|--|= ..+.+.+..|..|...|.|++.+.+++.-- ..+ .+|.++.+...-+
T Consensus 211 d~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEagl---glE----rAHmGmFTELaIL----------- 272 (624)
T 3lvg_A 211 DGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAAL---GLE----RAHMGMFTELAIL----------- 272 (624)
T ss_dssp HSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHT---TST----TCCHHHHHHHHHH-----------
T ss_pred CchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHh---CCC----chhHHHHHHHHHH-----------
Confidence 999998887654 456889999999999999999999988422 111 4567777653332
Q ss_pred HHHHHhcCCHHHHHHHHHHhccHHH---HHHHHHhhcCHHHHHHHHHhcCCHHHHHH
Q 035724 1251 AIHYYGLQDKKSMMKFVKSFRSVDL---MRKFLKSLSCFDDLLVLEEESGNFMDAAN 1304 (1939)
Q Consensus 1251 a~hy~kagD~k~A~~~~~~~~s~ee---A~~~L~k~~~ldea~ell~e~G~feEAa~ 1304 (1939)
|-+- .++.+|+.++.|-+.=- ..+.+.....|.+++=+|+.-..|+.|+.
T Consensus 273 ---YsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 273 ---YSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp ---HHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred ---HHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 3222 24445555543322110 22233344555555555555555555544
No 382
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=89.57 E-value=1.1 Score=50.88 Aligned_cols=90 Identities=13% Similarity=0.068 Sum_probs=61.9
Q ss_pred cCCHHHHHHhhcCCCCCCcccccccCHHHHhhhcc---CCcEEEecCCCChHHHHHHHHHHHHhHhhhhhhcccccCCCc
Q 035724 695 SLSSGAVSHLLSDRDGGELDLPFEVTDEQLEMILF---PKSSFILGRSGTGKTTILTMKLFQKEKLHHMAMDGFYGVNNS 771 (1939)
Q Consensus 695 ~~s~~~~~~il~~~~~~~~d~pf~l~~ee~~iI~~---p~~~~vlGrSGTGKTT~~L~kl~~~e~~~~~~~~~~~~~~~~ 771 (1939)
.++..+++.+-.. | --.++|-|.++|.. ...+++.+..|||||.+.+.=++.. +..+..
T Consensus 35 ~l~~~l~~~l~~~--g-----~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~-----l~~~~~------ 96 (242)
T 3fe2_A 35 NFPANVMDVIARQ--N-----FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVH-----INHQPF------ 96 (242)
T ss_dssp TCCHHHHHHHHTT--T-----CCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHH-----HHTSCC------
T ss_pred CCCHHHHHHHHHC--C-----CCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHH-----HHhccc------
Confidence 4777777766542 2 12478999999864 6789999999999999987766654 111000
Q ss_pred cccccccccCccCCCCcccccceeEEEEecCHHHHHHHHHHHHHHHh
Q 035724 772 VTLHSSWESGAEEGLGETERPILRQLFVTVSPKLCFAVKQHISQMIS 818 (1939)
Q Consensus 772 ~~~~~~~~~~~~~~~g~~~~~~l~qvfVT~S~~L~~~vk~~~~~l~~ 818 (1939)
.......+.||++-...|+.++.+.+.++..
T Consensus 97 ----------------~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 127 (242)
T 3fe2_A 97 ----------------LERGDGPICLVLAPTRELAQQVQQVAAEYCR 127 (242)
T ss_dssp ----------------CCTTCCCSEEEECSSHHHHHHHHHHHHHHHH
T ss_pred ----------------cccCCCCEEEEEeCcHHHHHHHHHHHHHHHh
Confidence 0011235689999999999998877776543
No 383
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=89.54 E-value=1.8 Score=54.82 Aligned_cols=150 Identities=16% Similarity=0.069 Sum_probs=96.5
Q ss_pred cCCHHH-HHHHHHHHHHhhCHHHHHHHHHHhCCc-------chHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHH
Q 035724 1062 ASSPEE-WKSRGIKLFHEHNYDMATICFEKAKDS-------YWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEA 1133 (1939)
Q Consensus 1062 ~Stpee-W~~lG~~l~~q~~yd~A~kcF~rAgd~-------~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~ 1133 (1939)
..+|+. +...=+.+.+.|++++|.+.|.+.... .+-.+..++.. .. ........+.+.+|-++|.+
T Consensus 22 ~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~---~~---~~~~~~~~~~l~~A~~lf~~ 95 (501)
T 4g26_A 22 QQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSL---AE---AATESSPNPGLSRGFDIFKQ 95 (501)
T ss_dssp --CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT---CC---CCSSSSCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh---CC---chhhhhhcchHHHHHHHHHH
Confidence 455664 344444455669999999999875331 11112222211 00 00011123455677777765
Q ss_pred c---C------CHHHHHHHHHHhCCHHHHHHHHHHhc------ChHHHHHHHHHHHHcCCHHHHHHHHHHcc--------
Q 035724 1134 I---G------KADSAAKCFYNLGEYERAGRIYLERR------EEPELEKAGECFFLAGCYKLAADVYAKGK-------- 1190 (1939)
Q Consensus 1134 ~---G------~~~kAaecy~kag~~~~A~eLY~e~~------~e~~~~qaAe~fE~~G~y~eAAelY~kag-------- 1190 (1939)
+ | -|.-.+..|.++|++++|.+++.+.. +...|.-.-..|.+.|++++|.++|..-.
T Consensus 96 M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~ 175 (501)
T 4g26_A 96 MIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEE 175 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCH
Confidence 3 2 14556888888899999888887631 11236677788899999999999997642
Q ss_pred -CHHHHHHHHHhcCChHHHHHHHHhhhh
Q 035724 1191 -FFSECLAVCSKGKLFEIGLQYMNHWKQ 1217 (1939)
Q Consensus 1191 -d~dkAI~my~k~k~fd~airLv~q~~d 1217 (1939)
-|.-.|..|.+.|++++|.+++++..+
T Consensus 176 ~ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 176 PELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 278899999999999999999996554
No 384
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=89.49 E-value=0.15 Score=53.49 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=17.5
Q ss_pred ccCCcEEEecCCCChHHHHH
Q 035724 728 LFPKSSFILGRSGTGKTTIL 747 (1939)
Q Consensus 728 ~~p~~~~vlGrSGTGKTT~~ 747 (1939)
..+.|+++.|.+|||||+++
T Consensus 25 ~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHH
T ss_pred CCCCcEEEECCCCccHHHHH
Confidence 34778999999999999976
No 385
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=89.42 E-value=0.17 Score=53.02 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=17.9
Q ss_pred cCCcEEEecCCCChHHHHHH
Q 035724 729 FPKSSFILGRSGTGKTTILT 748 (1939)
Q Consensus 729 ~p~~~~vlGrSGTGKTT~~L 748 (1939)
.+.|+++.|.+|||||+++-
T Consensus 23 ~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHH
Confidence 47799999999999999983
No 386
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=89.36 E-value=1.1 Score=49.81 Aligned_cols=85 Identities=15% Similarity=0.169 Sum_probs=61.9
Q ss_pred cCCHHHHHHhhcCCCCCCcccccccCHHHHhhhcc---CCcEEEecCCCChHHHHHHHHHHHHhHhhhhhhcccccCCCc
Q 035724 695 SLSSGAVSHLLSDRDGGELDLPFEVTDEQLEMILF---PKSSFILGRSGTGKTTILTMKLFQKEKLHHMAMDGFYGVNNS 771 (1939)
Q Consensus 695 ~~s~~~~~~il~~~~~~~~d~pf~l~~ee~~iI~~---p~~~~vlGrSGTGKTT~~L~kl~~~e~~~~~~~~~~~~~~~~ 771 (1939)
.+++.+.+.+-.. | ..+++|-|+++|.. ...+++.+..|||||.+.+.-++.. +..
T Consensus 10 ~l~~~l~~~l~~~--g-----~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~------l~~-------- 68 (219)
T 1q0u_A 10 PFQPFIIEAIKTL--R-----FYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEK------IKP-------- 68 (219)
T ss_dssp CCCHHHHHHHHHT--T-----CCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHH------CCT--------
T ss_pred CCCHHHHHHHHHC--C-----CCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHH------HHh--------
Confidence 4778887777542 2 24689999999974 6789999999999999988777665 100
Q ss_pred cccccccccCccCCCCcccccceeEEEEecCHHHHHHHHHHHHHHHh
Q 035724 772 VTLHSSWESGAEEGLGETERPILRQLFVTVSPKLCFAVKQHISQMIS 818 (1939)
Q Consensus 772 ~~~~~~~~~~~~~~~g~~~~~~l~qvfVT~S~~L~~~vk~~~~~l~~ 818 (1939)
.....+.|+++=...|+.++.+.+.++..
T Consensus 69 ------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 97 (219)
T 1q0u_A 69 ------------------ERAEVQAVITAPTRELATQIYHETLKITK 97 (219)
T ss_dssp ------------------TSCSCCEEEECSSHHHHHHHHHHHHHHHT
T ss_pred ------------------CcCCceEEEEcCcHHHHHHHHHHHHHHhh
Confidence 00124689999999999998777666543
No 387
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=89.30 E-value=0.68 Score=50.77 Aligned_cols=74 Identities=12% Similarity=0.053 Sum_probs=52.4
Q ss_pred cccccCHHHHhhhcc---CCcEEEecCCCChHHHHHHHHHHHHhHhhhhhhcccccCCCccccccccccCccCCCCcccc
Q 035724 715 LPFEVTDEQLEMILF---PKSSFILGRSGTGKTTILTMKLFQKEKLHHMAMDGFYGVNNSVTLHSSWESGAEEGLGETER 791 (1939)
Q Consensus 715 ~pf~l~~ee~~iI~~---p~~~~vlGrSGTGKTT~~L~kl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 791 (1939)
..+.++|-|++++.. ...++|.|..|||||+++++=+...- ..+.. ..
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~------~~~~~-----------------------~~ 80 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHL------DKKKK-----------------------AS 80 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHH------HHHHH-----------------------TT
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHH------hhccc-----------------------cc
Confidence 457899999999974 56899999999999999988776541 10000 00
Q ss_pred cceeEEEEecCHHHHHH-HHHHHHHHH
Q 035724 792 PILRQLFVTVSPKLCFA-VKQHISQMI 817 (1939)
Q Consensus 792 ~~l~qvfVT~S~~L~~~-vk~~~~~l~ 817 (1939)
...+.|+++-+..|+.+ +.+.+..+.
T Consensus 81 ~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 81 EPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp CCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred CCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 12358899989899887 666565543
No 388
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=89.28 E-value=0.41 Score=60.04 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=19.1
Q ss_pred CcEEEEeCCCCCchhHH-HHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKT-VSMLLDFC 254 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtt-i~~li~~~ 254 (1939)
+...+|.||+|||||+. +..++..+
T Consensus 21 ~~~vlv~a~TGsGKT~~~~l~il~~~ 46 (459)
T 2z83_A 21 RQMTVLDLHPGSGKTRKILPQIIKDA 46 (459)
T ss_dssp TCEEEECCCTTSCTTTTHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 46779999999999997 45555443
No 389
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=89.27 E-value=2.8 Score=40.28 Aligned_cols=86 Identities=8% Similarity=0.009 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC--------HH
Q 035724 1122 VNLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF--------FS 1193 (1939)
Q Consensus 1122 ~~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd--------~d 1193 (1939)
..+...+..|...|++++|+++|.++- ++.. .....+...|.++...|++.+|.++|.++-. +-
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~------~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 84 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAI------ELNP--ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYG 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH------HHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHH------HcCC--CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHH
Confidence 356677888888889998888776543 2200 1123466779999999999999999988722 22
Q ss_pred HHHHHHHhcCChHHHHHHHHhh
Q 035724 1194 ECLAVCSKGKLFEIGLQYMNHW 1215 (1939)
Q Consensus 1194 kAI~my~k~k~fd~airLv~q~ 1215 (1939)
....++.+.+++++|+...++.
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~ 106 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKA 106 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHH
Confidence 3345777888899888888753
No 390
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=89.22 E-value=0.21 Score=54.13 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.5
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
+.+.+|.||||+||||++..+.+.+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4678999999999999999887654
No 391
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=89.17 E-value=0.17 Score=66.19 Aligned_cols=63 Identities=17% Similarity=0.239 Sum_probs=39.3
Q ss_pred CcEEEEeCCCCCchhHHHHHHH---------------------HHH-----------------hcCCcEEEEcccchhhH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLL---------------------DFC-----------------FTKASLIFCTASSSYKL 271 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li---------------------~~~-----------------l~~a~vI~~T~sss~~l 271 (1939)
....+++||.|+|||+.....+ +.+ ....+|+++|.......
T Consensus 232 ~~~vlv~ApTGSGKT~a~~l~ll~~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~~~~~~~IlV~TPGrLl~~ 311 (666)
T 3o8b_A 232 FQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRTITTGAPVTYSTYGKFLAD 311 (666)
T ss_dssp CEEEEEECCTTSCTTTHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCEECCCCSEEEEEHHHHHHT
T ss_pred CCeEEEEeCCchhHHHHHHHHHHHCCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEeccCCCCEEEECcHHHHhC
Confidence 4567999999999997664333 000 12356777765433222
Q ss_pred HhhhccCCcEEEEeCCcccch
Q 035724 272 HRVAMEQLKFLVIDEAAQLKE 292 (1939)
Q Consensus 272 ~~l~~~~fdvVIIDEASQ~~E 292 (1939)
..+....+++||||||.++..
T Consensus 312 ~~l~l~~l~~lVlDEAH~l~~ 332 (666)
T 3o8b_A 312 GGCSGGAYDIIICDECHSTDS 332 (666)
T ss_dssp TSCCTTSCSEEEETTTTCCSH
T ss_pred CCcccCcccEEEEccchhcCc
Confidence 223345689999999966543
No 392
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=89.14 E-value=0.22 Score=53.73 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=21.3
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHHh
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFCF 255 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~l 255 (1939)
.+.+|.||||+||||++..|.+.+-
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4679999999999999998876553
No 393
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=89.10 E-value=0.79 Score=58.04 Aligned_cols=104 Identities=13% Similarity=0.019 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 035724 1066 EEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCFY 1145 (1939)
Q Consensus 1066 eeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy~ 1145 (1939)
.-...+|..+..+|+|++|+.+|+++-. ...+.++ ...|. --..+...|.+|...|++++|..+|.
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~----i~~~~lG---------~~Hp~-~a~~l~nLa~~~~~~G~~~eA~~~~~ 417 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVD----GYMKLYH---------HNNAQ-LGMAVMRAGLTNWHAGHIEVGHGMIC 417 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHHHHSC---------TTCHH-HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH----HHHHHcC---------CCCHH-HHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4567889999999999999999998733 1222221 12233 23467899999999999999987765
Q ss_pred HhCCHHHHHHHHHHhcChH------HHHHHHHHHHHcCCHHHHHHHHHHc
Q 035724 1146 NLGEYERAGRIYLERREEP------ELEKAGECFFLAGCYKLAADVYAKG 1189 (1939)
Q Consensus 1146 kag~~~~A~eLY~e~~~e~------~~~qaAe~fE~~G~y~eAAelY~ka 1189 (1939)
+|.+++....+.. .....++++.+.|.|++|+.+|.++
T Consensus 418 ------~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 418 ------KAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp ------HHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556665554432 2456678888999999999999886
No 394
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=89.04 E-value=0.71 Score=54.69 Aligned_cols=34 Identities=29% Similarity=0.287 Sum_probs=24.5
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHh-cCCcEEEE
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCF-TKASLIFC 263 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l-~~a~vI~~ 263 (1939)
+.+.++.||||+||||++..++..+. ...+|.+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~ 132 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLV 132 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 45778889999999999998884443 23445443
No 395
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=88.99 E-value=0.085 Score=70.90 Aligned_cols=25 Identities=36% Similarity=0.704 Sum_probs=21.3
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
....++.||||||||+++..+...+
T Consensus 511 ~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred CceeEEECCCCCCHHHHHHHHHHHh
Confidence 3456999999999999999998665
No 396
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=88.84 E-value=0.27 Score=56.49 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=21.7
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 229 KATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 229 ~~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
.+.+.+|.||||+||||++..+.+.+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45678999999999999998887654
No 397
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=88.82 E-value=0.91 Score=50.47 Aligned_cols=83 Identities=17% Similarity=0.231 Sum_probs=59.4
Q ss_pred cCCHHHHHHhhcCCCCCCcccccccCHHHHhhhcc---CCcEEEecCCCChHHHHHHHHHHHHhHhhhhhhcccccCCCc
Q 035724 695 SLSSGAVSHLLSDRDGGELDLPFEVTDEQLEMILF---PKSSFILGRSGTGKTTILTMKLFQKEKLHHMAMDGFYGVNNS 771 (1939)
Q Consensus 695 ~~s~~~~~~il~~~~~~~~d~pf~l~~ee~~iI~~---p~~~~vlGrSGTGKTT~~L~kl~~~e~~~~~~~~~~~~~~~~ 771 (1939)
.+++.+++.+-.- | .-.++|-|++++.. ...++|.+..|||||.+.+.-++.. +..
T Consensus 20 ~l~~~l~~~l~~~--g-----~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~------l~~-------- 78 (224)
T 1qde_A 20 ELDENLLRGVFGY--G-----FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR------IDT-------- 78 (224)
T ss_dssp TCCHHHHHHHHHH--T-----CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------CCT--------
T ss_pred CCCHHHHHHHHHC--C-----CCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHH------Hhc--------
Confidence 4777777766442 1 12589999999874 5689999999999999987777665 100
Q ss_pred cccccccccCccCCCCcccccceeEEEEecCHHHHHHHHHHHHHH
Q 035724 772 VTLHSSWESGAEEGLGETERPILRQLFVTVSPKLCFAVKQHISQM 816 (1939)
Q Consensus 772 ~~~~~~~~~~~~~~~g~~~~~~l~qvfVT~S~~L~~~vk~~~~~l 816 (1939)
.....+.|+++-+..|+.++.+.+.++
T Consensus 79 ------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (224)
T 1qde_A 79 ------------------SVKAPQALMLAPTRELALQIQKVVMAL 105 (224)
T ss_dssp ------------------TCCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred ------------------cCCCceEEEEECCHHHHHHHHHHHHHH
Confidence 001246899999999999887666554
No 398
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=88.77 E-value=0.25 Score=53.43 Aligned_cols=25 Identities=32% Similarity=0.290 Sum_probs=20.9
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
....+|.||||+||||++..+.+.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467899999999999999887654
No 399
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=88.75 E-value=1.8 Score=44.18 Aligned_cols=86 Identities=17% Similarity=0.063 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC--------HHH
Q 035724 1123 NLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF--------FSE 1194 (1939)
Q Consensus 1123 ~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd--------~dk 1194 (1939)
.+...|..|...|++++|+++|.++ .++.- .....+...|.++...|+|++|.++|.++-. +-.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~a------l~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQAL------CMLDH--YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHH------HHhCC--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 3456677778888888888877543 22200 1123467789999999999999999998732 233
Q ss_pred HHHHHHhcCChHHHHHHHHhhh
Q 035724 1195 CLAVCSKGKLFEIGLQYMNHWK 1216 (1939)
Q Consensus 1195 AI~my~k~k~fd~airLv~q~~ 1216 (1939)
...+|...|++++|+...++..
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSAR 113 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 4457788999999998887533
No 400
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=88.74 E-value=1.3 Score=50.76 Aligned_cols=84 Identities=18% Similarity=0.211 Sum_probs=60.7
Q ss_pred cCCHHHHHHhhcCCCCCCcccccccCHHHHhhhcc---CCcEEEecCCCChHHHHHHHHHHHHhHhhhhhhcccccCCCc
Q 035724 695 SLSSGAVSHLLSDRDGGELDLPFEVTDEQLEMILF---PKSSFILGRSGTGKTTILTMKLFQKEKLHHMAMDGFYGVNNS 771 (1939)
Q Consensus 695 ~~s~~~~~~il~~~~~~~~d~pf~l~~ee~~iI~~---p~~~~vlGrSGTGKTT~~L~kl~~~e~~~~~~~~~~~~~~~~ 771 (1939)
.+++.+++.+-.- | -..++|-|+++|.. ...+++.+..|||||++.+.=++.. ... +
T Consensus 49 ~l~~~l~~~l~~~--g-----~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~-----l~~-~------- 108 (249)
T 3ber_A 49 GVTDVLCEACDQL--G-----WTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA-----LLE-T------- 108 (249)
T ss_dssp TCCHHHHHHHHHT--T-----CCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHH-----HHH-S-------
T ss_pred CCCHHHHHHHHHc--C-----CCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHH-----Hhc-C-------
Confidence 5788887766442 1 12689999999874 5689999999999999987766654 110 0
Q ss_pred cccccccccCccCCCCcccccceeEEEEecCHHHHHHHHHHHHHHH
Q 035724 772 VTLHSSWESGAEEGLGETERPILRQLFVTVSPKLCFAVKQHISQMI 817 (1939)
Q Consensus 772 ~~~~~~~~~~~~~~~g~~~~~~l~qvfVT~S~~L~~~vk~~~~~l~ 817 (1939)
....+.|+++=...|+.++.+.+.++.
T Consensus 109 -------------------~~~~~~lil~Ptr~L~~q~~~~~~~~~ 135 (249)
T 3ber_A 109 -------------------PQRLFALVLTPTRELAFQISEQFEALG 135 (249)
T ss_dssp -------------------CCSSCEEEECSSHHHHHHHHHHHHHHH
T ss_pred -------------------CCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 012458999999999999877776654
No 401
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=88.64 E-value=0.24 Score=55.14 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=21.6
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
..+.+|.||+|+||||++..|+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 5688999999999999999887543
No 402
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=88.62 E-value=0.22 Score=53.75 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=20.7
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHh
Q 035724 232 VELIWGPPGTGKTKTVSMLLDFCF 255 (1939)
Q Consensus 232 v~LI~GPPGTGKTtti~~li~~~l 255 (1939)
+.+|.||||+||||++..|.+.+-
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 568999999999999998887653
No 403
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=88.58 E-value=0.17 Score=54.00 Aligned_cols=19 Identities=32% Similarity=0.698 Sum_probs=16.9
Q ss_pred CCcEEEecCCCChHHHHHH
Q 035724 730 PKSSFILGRSGTGKTTILT 748 (1939)
Q Consensus 730 p~~~~vlGrSGTGKTT~~L 748 (1939)
+.+++|.|.+||||||++-
T Consensus 43 ~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp SCEEEEECCTTSCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 5679999999999999874
No 404
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=88.58 E-value=0.48 Score=58.84 Aligned_cols=44 Identities=18% Similarity=0.267 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhc
Q 035724 208 TLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFT 256 (1939)
Q Consensus 208 ~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~ 256 (1939)
.+...+..++..++. ....+.+|.||.|+|||||+..++..+-.
T Consensus 150 g~~~~~~~~L~~l~~-----~~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 150 GMTAHNHDNFRRLIK-----RPHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp CCCHHHHHHHHHHHT-----SSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHH-----hcCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 567788888888754 23578999999999999999999876643
No 405
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=88.56 E-value=1.5 Score=49.24 Aligned_cols=83 Identities=19% Similarity=0.272 Sum_probs=59.7
Q ss_pred cCCHHHHHHhhcCCCCCCccccc-ccCHHHHhhhcc---CCcEEEecCCCChHHHHHHHHHHHHhHhhhhhhcccccCCC
Q 035724 695 SLSSGAVSHLLSDRDGGELDLPF-EVTDEQLEMILF---PKSSFILGRSGTGKTTILTMKLFQKEKLHHMAMDGFYGVNN 770 (1939)
Q Consensus 695 ~~s~~~~~~il~~~~~~~~d~pf-~l~~ee~~iI~~---p~~~~vlGrSGTGKTT~~L~kl~~~e~~~~~~~~~~~~~~~ 770 (1939)
.++..+.+.+-. ..| .++|-|+++|.. ...+++.+..|||||.+.+.-++.. +..
T Consensus 30 ~l~~~l~~~l~~--------~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~-----l~~-------- 88 (230)
T 2oxc_A 30 LLSRPVLEGLRA--------AGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDS-----LVL-------- 88 (230)
T ss_dssp TCCHHHHHHHHH--------TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----CCT--------
T ss_pred CCCHHHHHHHHH--------CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHH-----HHh--------
Confidence 477777776643 223 389999999974 5689999999999999988776654 100
Q ss_pred ccccccccccCccCCCCcccccceeEEEEecCHHHHHHHHHHHHHHH
Q 035724 771 SVTLHSSWESGAEEGLGETERPILRQLFVTVSPKLCFAVKQHISQMI 817 (1939)
Q Consensus 771 ~~~~~~~~~~~~~~~~g~~~~~~l~qvfVT~S~~L~~~vk~~~~~l~ 817 (1939)
.....+.||++=...|+.++.+.+.++.
T Consensus 89 -------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 116 (230)
T 2oxc_A 89 -------------------ENLSTQILILAPTREIAVQIHSVITAIG 116 (230)
T ss_dssp -------------------TSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred -------------------cCCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 0012458999999999999877766653
No 406
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=88.54 E-value=1.5 Score=52.16 Aligned_cols=90 Identities=12% Similarity=0.075 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCHH---------HHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC--
Q 035724 1123 NLREAAKIFEAIGKADSAAKCFYNLGEYE---------RAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF-- 1191 (1939)
Q Consensus 1123 ~y~eAA~lYe~~G~~~kAaecy~kag~~~---------~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd-- 1191 (1939)
.+...+..|.+.|++++|+++|.++-... ++.++-. .....+...|.++.+.|+|.+|.++|.++-.
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~--~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQA--LRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45677888888899999988887653221 1111100 0013466778888889999999888887722
Q ss_pred ------HHHHHHHHHhcCChHHHHHHHHh
Q 035724 1192 ------FSECLAVCSKGKLFEIGLQYMNH 1214 (1939)
Q Consensus 1192 ------~dkAI~my~k~k~fd~airLv~q 1214 (1939)
+-....+|...+++++|+...++
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 255 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQK 255 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 12223355667777777777664
No 407
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=88.52 E-value=15 Score=40.16 Aligned_cols=20 Identities=10% Similarity=-0.237 Sum_probs=15.7
Q ss_pred CCcchhhHHHHHHHHHhHhh
Q 035724 1350 PLKQFTKKKELLEKAKSLAK 1369 (1939)
Q Consensus 1350 ~~~~~~~ae~ll~~A~~~~~ 1369 (1939)
-++++.+|..++.+|-..-.
T Consensus 180 ~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 180 IEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp BCCCHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHcCC
Confidence 35669999999999988543
No 408
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=88.49 E-value=0.36 Score=54.32 Aligned_cols=35 Identities=31% Similarity=0.330 Sum_probs=25.8
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHh-cCCcEEEEc
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCF-TKASLIFCT 264 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l-~~a~vI~~T 264 (1939)
..+++|.||||+|||+++..++.... ....++..+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 57899999999999999887764443 344555543
No 409
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=88.48 E-value=0.22 Score=53.17 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=19.7
Q ss_pred cEEEEeCCCCCchhHHHHHHHHH
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDF 253 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~ 253 (1939)
.+..|.||||+||||++..+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46799999999999999887654
No 410
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=88.46 E-value=0.91 Score=50.29 Aligned_cols=43 Identities=21% Similarity=0.206 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcC
Q 035724 211 DSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTK 257 (1939)
Q Consensus 211 ~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~ 257 (1939)
..+.+.+...+... ..+..+|.|+||+||||++..++......
T Consensus 15 ~~~~~~~~~~~~~~----~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 15 KRLAEKNREALRES----GTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHHHH----TCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhccc----CceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 34444445544321 24677899999999999999998765433
No 411
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.44 E-value=0.43 Score=68.97 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=29.9
Q ss_pred CcEEEEeCCCCCchhHHHHHHH-HHHhcCCcEEEEcccc
Q 035724 230 ATVELIWGPPGTGKTKTVSMLL-DFCFTKASLIFCTASS 267 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li-~~~l~~a~vI~~T~ss 267 (1939)
....+|.||||||||+++..++ ..+.+..++++.|...
T Consensus 1081 g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee 1119 (2050)
T 3cmu_A 1081 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 1119 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccc
Confidence 5678999999999999998888 4455566777776543
No 412
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=88.37 E-value=0.33 Score=70.09 Aligned_cols=67 Identities=18% Similarity=0.252 Sum_probs=50.7
Q ss_pred cccccCHHHHhhhcc----CCcEEEecCCCChHHHHHHHHHHHHhHhhhhhhcccccCCCccccccccccCccCCCCccc
Q 035724 715 LPFEVTDEQLEMILF----PKSSFILGRSGTGKTTILTMKLFQKEKLHHMAMDGFYGVNNSVTLHSSWESGAEEGLGETE 790 (1939)
Q Consensus 715 ~pf~l~~ee~~iI~~----p~~~~vlGrSGTGKTT~~L~kl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 790 (1939)
|++ ++|=|.+++.- ...++|.+..|+|||+|+.+-+++. +.++
T Consensus 924 f~~-fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~------l~~~-------------------------- 970 (1724)
T 4f92_B 924 FPF-FNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRM------LLQS-------------------------- 970 (1724)
T ss_dssp CSB-CCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHH------HHHC--------------------------
T ss_pred CCC-CCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHH------HHhC--------------------------
Confidence 444 89999988862 5579999999999999999988887 1110
Q ss_pred ccceeEEEEecCHHHHHHHHHHHHH
Q 035724 791 RPILRQLFVTVSPKLCFAVKQHISQ 815 (1939)
Q Consensus 791 ~~~l~qvfVT~S~~L~~~vk~~~~~ 815 (1939)
..-+.||++=-.-||.++-+.|.+
T Consensus 971 -~~~kavyi~P~raLa~q~~~~~~~ 994 (1724)
T 4f92_B 971 -SEGRCVYITPMEALAEQVYMDWYE 994 (1724)
T ss_dssp -TTCCEEEECSCHHHHHHHHHHHHH
T ss_pred -CCCEEEEEcChHHHHHHHHHHHHH
Confidence 012489999888999888766654
No 413
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=88.36 E-value=30 Score=41.12 Aligned_cols=129 Identities=10% Similarity=-0.071 Sum_probs=83.7
Q ss_pred CCHHHHHHHHHHHHHhhCHHHHHHHHHHh-CCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHH
Q 035724 1063 SSPEEWKSRGIKLFHEHNYDMATICFEKA-KDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAA 1141 (1939)
Q Consensus 1063 StpeeW~~lG~~l~~q~~yd~A~kcF~rA-gd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAa 1141 (1939)
.++......|..+...|++++|++.+.++ +.... ......+.-++++|.+.|+.++|.
T Consensus 98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~---------------------~~~lea~~l~vqi~L~~~r~d~A~ 156 (310)
T 3mv2_B 98 NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEA---------------------EGTTELLLLAIEVALLNNNVSTAS 156 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCS---------------------TTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---------------------cCcHHHHHHHHHHHHHCCCHHHHH
Confidence 55677889999999999999999999986 22100 012334568899999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHhcChHHHHHHHHH--HHHcC--CHHHHHHHHHHc----cC---HHHHHHHHHhcCChHHHHH
Q 035724 1142 KCFYNLGEYERAGRIYLERREEPELEKAGEC--FFLAG--CYKLAADVYAKG----KF---FSECLAVCSKGKLFEIGLQ 1210 (1939)
Q Consensus 1142 ecy~kag~~~~A~eLY~e~~~e~~~~qaAe~--fE~~G--~y~eAAelY~ka----gd---~dkAI~my~k~k~fd~air 1210 (1939)
+.+.+......-.-.. ....+.+.++. .-..| ++++|..+|... ++ ......++.+.|+|++|.+
T Consensus 157 k~l~~~~~~~~d~~~~----~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~ 232 (310)
T 3mv2_B 157 TIFDNYTNAIEDTVSG----DNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQG 232 (310)
T ss_dssp HHHHHHHHHSCHHHHH----HHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHhcCcccccc----chHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHH
Confidence 8886643322100000 01112222322 22334 899998888775 33 2344558889999999999
Q ss_pred HHHhhh
Q 035724 1211 YMNHWK 1216 (1939)
Q Consensus 1211 Lv~q~~ 1216 (1939)
.++.+.
T Consensus 233 ~L~~l~ 238 (310)
T 3mv2_B 233 IVELLL 238 (310)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987543
No 414
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=88.35 E-value=0.18 Score=55.46 Aligned_cols=18 Identities=39% Similarity=0.658 Sum_probs=16.3
Q ss_pred CcEEEecCCCChHHHHHH
Q 035724 731 KSSFILGRSGTGKTTILT 748 (1939)
Q Consensus 731 ~~~~vlGrSGTGKTT~~L 748 (1939)
.++++.|.+||||||++-
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 789999999999999864
No 415
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=88.21 E-value=6.2 Score=49.99 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=14.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 035724 1124 LREAAKIFEAIGKADSAAKCFYN 1146 (1939)
Q Consensus 1124 y~eAA~lYe~~G~~~kAaecy~k 1146 (1939)
+..+...|.+.|+.++|.++|..
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~ 51 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDE 51 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHH
Confidence 45556666666777766666654
No 416
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=88.19 E-value=0.28 Score=53.85 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=21.3
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
+.+.+|.||||+||||++..|.+.+
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3567999999999999999887655
No 417
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=88.17 E-value=0.27 Score=53.02 Aligned_cols=25 Identities=32% Similarity=0.324 Sum_probs=20.8
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
..+.+|.||||+||||++..+.+.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3467899999999999999887554
No 418
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=88.14 E-value=0.099 Score=67.85 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=18.0
Q ss_pred EEEEeCCCCCchhHHHHHHHH
Q 035724 232 VELIWGPPGTGKTKTVSMLLD 252 (1939)
Q Consensus 232 v~LI~GPPGTGKTtti~~li~ 252 (1939)
-.|+.||||||||+++..+.+
T Consensus 329 ~vLL~GppGtGKT~LAr~la~ 349 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISR 349 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSST
T ss_pred ceEEECCCchHHHHHHHHHHH
Confidence 469999999999999987764
No 419
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=88.09 E-value=1.4 Score=53.35 Aligned_cols=84 Identities=17% Similarity=0.233 Sum_probs=62.6
Q ss_pred cCCHHHHHHhhcCCCCCCcccccccCHHHHhhhcc---CCcEEEecCCCChHHHHHHHHHHHHhHhhhhhhcccccCCCc
Q 035724 695 SLSSGAVSHLLSDRDGGELDLPFEVTDEQLEMILF---PKSSFILGRSGTGKTTILTMKLFQKEKLHHMAMDGFYGVNNS 771 (1939)
Q Consensus 695 ~~s~~~~~~il~~~~~~~~d~pf~l~~ee~~iI~~---p~~~~vlGrSGTGKTT~~L~kl~~~e~~~~~~~~~~~~~~~~ 771 (1939)
.+++.+.+.|... | +. .++|-|+++|.. ...++|.+..|||||++++.-++.. +..+
T Consensus 27 ~l~~~l~~~l~~~--g----~~-~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~------~~~~------- 86 (400)
T 1s2m_A 27 YLKRELLMGIFEA--G----FE-KPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEK------VKPK------- 86 (400)
T ss_dssp CCCHHHHHHHHHT--T----CC-SCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHH------CCTT-------
T ss_pred CCCHHHHHHHHHC--C----CC-CCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHH------Hhhc-------
Confidence 4788888888763 2 21 589999999985 6679999999999999998877765 1100
Q ss_pred cccccccccCccCCCCcccccceeEEEEecCHHHHHHHHHHHHHHH
Q 035724 772 VTLHSSWESGAEEGLGETERPILRQLFVTVSPKLCFAVKQHISQMI 817 (1939)
Q Consensus 772 ~~~~~~~~~~~~~~~g~~~~~~l~qvfVT~S~~L~~~vk~~~~~l~ 817 (1939)
....+.++++-+..|+.+..+.+.++-
T Consensus 87 -------------------~~~~~~lil~P~~~L~~q~~~~~~~~~ 113 (400)
T 1s2m_A 87 -------------------LNKIQALIMVPTRELALQTSQVVRTLG 113 (400)
T ss_dssp -------------------SCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred -------------------cCCccEEEEcCCHHHHHHHHHHHHHHh
Confidence 012458999999999998877776653
No 420
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=88.08 E-value=2.4 Score=44.03 Aligned_cols=96 Identities=8% Similarity=0.051 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHH--------HH--HhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC
Q 035724 1122 VNLREAAKIFEAIGKADSAAKCFYNLGEYERAGRI--------YL--ERREEPELEKAGECFFLAGCYKLAADVYAKGKF 1191 (1939)
Q Consensus 1122 ~~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eL--------Y~--e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd 1191 (1939)
..+.+.+..|.+.|++++|+++|.++-..-..... .. .-.....+...|.++...|+|.+|.+.|.++=.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 45678888888999999999988776543111000 00 001113467789999999999999999988722
Q ss_pred --------HHHHHHHHHhcCChHHHHHHHHhhhh
Q 035724 1192 --------FSECLAVCSKGKLFEIGLQYMNHWKQ 1217 (1939)
Q Consensus 1192 --------~dkAI~my~k~k~fd~airLv~q~~d 1217 (1939)
+-....+|...++|++|+...++.-+
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 22233467788999999988875444
No 421
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.06 E-value=0.51 Score=67.42 Aligned_cols=64 Identities=19% Similarity=0.268 Sum_probs=43.5
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHH-HhcCCcEEEEcccchhh------------------------HHh----h-hccCC
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDF-CFTKASLIFCTASSSYK------------------------LHR----V-AMEQL 279 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~-~l~~a~vI~~T~sss~~------------------------l~~----l-~~~~f 279 (1939)
..+++|.||||||||+++..++.. +.....+++.|+..... +.. + ....+
T Consensus 34 G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~~~~lg~dl~~i~i~~p~t~e~l~~ll~~L~~~~~~ 113 (1706)
T 3cmw_A 34 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV 113 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHHHHhhccCccceeeeccCcHHHHHHHHHHHHhccCC
Confidence 578999999999999999887743 44556677765543210 000 1 12468
Q ss_pred cEEEEeCCcccchH
Q 035724 280 KFLVIDEAAQLKEV 293 (1939)
Q Consensus 280 dvVIIDEASQ~~E~ 293 (1939)
++||||+.+.+...
T Consensus 114 ~LVVIDSLt~L~~~ 127 (1706)
T 3cmw_A 114 DVIVVDSVAALTPK 127 (1706)
T ss_dssp SEEEESCSTTCCCH
T ss_pred CEEEEcchhhhccc
Confidence 99999999987643
No 422
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=88.03 E-value=2.2 Score=51.80 Aligned_cols=91 Identities=12% Similarity=0.075 Sum_probs=59.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCHHHHH----------HHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC--
Q 035724 1124 LREAAKIFEAIGKADSAAKCFYNLGEYERAG----------RIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF-- 1191 (1939)
Q Consensus 1124 y~eAA~lYe~~G~~~kAaecy~kag~~~~A~----------eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd-- 1191 (1939)
+...|..|.+.|++++|+++|.++-.+.... ++.. .....+...|.++.+.|+|++|.++|.++-+
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~--~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQP--VALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHH--HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 5566777888888888888887665432110 0100 0112367789999999999999999988732
Q ss_pred ------HHHHHHHHHhcCChHHHHHHHHhhh
Q 035724 1192 ------FSECLAVCSKGKLFEIGLQYMNHWK 1216 (1939)
Q Consensus 1192 ------~dkAI~my~k~k~fd~airLv~q~~ 1216 (1939)
+-....+|.+.+++++|+...++..
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al 334 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQ 334 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 1222346677888888888777533
No 423
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=87.96 E-value=1.8 Score=52.36 Aligned_cols=26 Identities=31% Similarity=0.305 Sum_probs=22.1
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 229 KATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 229 ~~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
...+..|.|+||+||||++..++..+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999988554
No 424
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=87.93 E-value=2.9 Score=39.50 Aligned_cols=87 Identities=16% Similarity=0.127 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC--------HHH
Q 035724 1123 NLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF--------FSE 1194 (1939)
Q Consensus 1123 ~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd--------~dk 1194 (1939)
.+...+..|...|++++|+++|.++-. +.- .....+...|.++...|+|++|.++|.++-. +-.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~------~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 77 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIK------LDP--HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSR 77 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH------HCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHH------HCC--CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHH
Confidence 456677788888888888877765432 100 1123466779999999999999999988722 223
Q ss_pred HHHHHHhcCChHHHHHHHHhhhh
Q 035724 1195 CLAVCSKGKLFEIGLQYMNHWKQ 1217 (1939)
Q Consensus 1195 AI~my~k~k~fd~airLv~q~~d 1217 (1939)
...++.+.+++++|....++..+
T Consensus 78 ~a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 78 KAAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 34577788999999988875443
No 425
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=87.91 E-value=0.64 Score=45.87 Aligned_cols=85 Identities=14% Similarity=0.051 Sum_probs=53.5
Q ss_pred hhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHH
Q 035724 1078 EHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIY 1157 (1939)
Q Consensus 1078 q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY 1157 (1939)
.+++++|+.+|.++-.... .+|. ....+...+..|...|++++|+++|.++- ++.
T Consensus 3 ~g~~~~A~~~~~~al~~~~------------------~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al------~~~ 57 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGL------------------QGKD-LAECYLGLGSTFRTLGEYRKAEAVLANGV------KQF 57 (117)
T ss_dssp ----CCCHHHHHHHHSSCC------------------CHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHC
T ss_pred CCcHHHHHHHHHHHHHcCC------------------CCcc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HhC
Confidence 5778899999988743210 0122 23356778888999999999988876542 221
Q ss_pred HHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 035724 1158 LERREEPELEKAGECFFLAGCYKLAADVYAKG 1189 (1939)
Q Consensus 1158 ~e~~~e~~~~qaAe~fE~~G~y~eAAelY~ka 1189 (1939)
- -....+...|.++...|++++|.++|.++
T Consensus 58 p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 87 (117)
T 3k9i_A 58 P--NHQALRVFYAMVLYNLGRYEQGVELLLKI 87 (117)
T ss_dssp T--TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred C--CchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 11233556788888889999988888765
No 426
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=87.90 E-value=0.21 Score=55.23 Aligned_cols=18 Identities=50% Similarity=0.765 Sum_probs=16.3
Q ss_pred CCcEEEecCCCChHHHHH
Q 035724 730 PKSSFILGRSGTGKTTIL 747 (1939)
Q Consensus 730 p~~~~vlGrSGTGKTT~~ 747 (1939)
.+|++|.|.||+||||++
T Consensus 1 ~RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 1 SRPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 379999999999999976
No 427
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=87.84 E-value=0.2 Score=57.40 Aligned_cols=20 Identities=40% Similarity=0.757 Sum_probs=17.4
Q ss_pred cCCcEEEecCCCChHHHHHH
Q 035724 729 FPKSSFILGRSGTGKTTILT 748 (1939)
Q Consensus 729 ~p~~~~vlGrSGTGKTT~~L 748 (1939)
.|.++++.|.|||||||++-
T Consensus 44 ~~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHH
Confidence 46789999999999999864
No 428
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=87.79 E-value=0.3 Score=52.79 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=20.8
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
+.+.+|.||||+||||++..+.+.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567999999999999998887543
No 429
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=87.71 E-value=3.5 Score=40.35 Aligned_cols=84 Identities=15% Similarity=0.076 Sum_probs=54.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcCh---HHHHHHHHHHHHcCCHHHHHHHHHHcc-----C------
Q 035724 1126 EAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREE---PELEKAGECFFLAGCYKLAADVYAKGK-----F------ 1191 (1939)
Q Consensus 1126 eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e---~~~~qaAe~fE~~G~y~eAAelY~kag-----d------ 1191 (1939)
..|..+...|++++|+++|.++ .+.+-. .. ..+-..|.++...|+|++|.+.|.++- .
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~------~~~~p~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 78 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSF------LELYPN--GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGG 78 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH------HHHCSS--STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHH------HHHCCC--CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHH
Confidence 4455666667777776665542 111100 11 246677999999999999999998862 2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhhhh
Q 035724 1192 FSECLAVCSKGKLFEIGLQYMNHWKQ 1217 (1939)
Q Consensus 1192 ~dkAI~my~k~k~fd~airLv~q~~d 1217 (1939)
+-....++.+.+++++|+...++..+
T Consensus 79 ~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 79 LLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22234467788999999988875443
No 430
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=87.70 E-value=2.2 Score=44.34 Aligned_cols=88 Identities=16% Similarity=0.029 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHcc-----C---HH
Q 035724 1122 VNLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGK-----F---FS 1193 (1939)
Q Consensus 1122 ~~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kag-----d---~d 1193 (1939)
..+...+..|...|++++|+++|.++ .++.- .....+...|.++...|+|++|.++|.++- + +-
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~a------l~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 93 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQAL------CVLDH--YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF 93 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHH------HHcCc--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 34566788888889999998887643 22200 112346778999999999999999999972 2 22
Q ss_pred HHHHHHHhcCChHHHHHHHHhhhh
Q 035724 1194 ECLAVCSKGKLFEIGLQYMNHWKQ 1217 (1939)
Q Consensus 1194 kAI~my~k~k~fd~airLv~q~~d 1217 (1939)
....+|...|++++|+...++.-+
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 234467788999999988875433
No 431
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=87.68 E-value=0.72 Score=55.80 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=21.6
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
..+..|.||||+||||++..++...
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 5678999999999999999998543
No 432
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=87.68 E-value=2.2 Score=40.74 Aligned_cols=87 Identities=13% Similarity=0.152 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC--------HH
Q 035724 1122 VNLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF--------FS 1193 (1939)
Q Consensus 1122 ~~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd--------~d 1193 (1939)
..+...+..|...|++++|+++|.++- +... -....+...|.++...|++++|.++|.++-. +-
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~------~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 81 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKAL------ELDP--NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWY 81 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH------HHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH------HHCc--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHH
Confidence 346677788888888888888776552 1100 1123366779999999999999999988632 12
Q ss_pred HHHHHHHhcCChHHHHHHHHhhh
Q 035724 1194 ECLAVCSKGKLFEIGLQYMNHWK 1216 (1939)
Q Consensus 1194 kAI~my~k~k~fd~airLv~q~~ 1216 (1939)
....++.+.+++++|+.+.++..
T Consensus 82 ~la~~~~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 82 NLGNAYYKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH
Confidence 34456778888998888877533
No 433
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=87.61 E-value=0.33 Score=53.50 Aligned_cols=25 Identities=20% Similarity=0.097 Sum_probs=21.2
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
..+.+|.||||+||||++..+.+.+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3577999999999999999888654
No 434
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=87.54 E-value=0.32 Score=52.18 Aligned_cols=25 Identities=20% Similarity=0.326 Sum_probs=21.1
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
..+.+|.||||+||||++..+...+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4578999999999999998887543
No 435
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=87.44 E-value=1.1 Score=53.61 Aligned_cols=24 Identities=25% Similarity=0.540 Sum_probs=20.7
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDF 253 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~ 253 (1939)
+.+.+|.||+|+|||||+..++..
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 567889999999999999988843
No 436
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=87.39 E-value=0.3 Score=53.86 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=21.7
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
..+..|.||||+||||++..|...+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4688999999999999999887655
No 437
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=87.39 E-value=1.3 Score=49.76 Aligned_cols=87 Identities=18% Similarity=0.204 Sum_probs=59.9
Q ss_pred cCCHHHHHHhhcCCCCCCcccccccCHHHHhhhcc---CCcEEEecCCCChHHHHHHHHHHHHhHhhhhhhcccccCCCc
Q 035724 695 SLSSGAVSHLLSDRDGGELDLPFEVTDEQLEMILF---PKSSFILGRSGTGKTTILTMKLFQKEKLHHMAMDGFYGVNNS 771 (1939)
Q Consensus 695 ~~s~~~~~~il~~~~~~~~d~pf~l~~ee~~iI~~---p~~~~vlGrSGTGKTT~~L~kl~~~e~~~~~~~~~~~~~~~~ 771 (1939)
.++..+++.+-.. | --.++|-|.++|.. ...+++.+..|||||++.+.=++.. +.+...
T Consensus 31 ~l~~~l~~~l~~~--~-----~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~-----l~~~~~------ 92 (236)
T 2pl3_A 31 PLSKKTLKGLQEA--Q-----YRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA-----LYRLQW------ 92 (236)
T ss_dssp CCCHHHHHHHHHT--T-----CCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHH-----HHHTTC------
T ss_pred CCCHHHHHHHHHC--C-----CCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHH-----HHhhcc------
Confidence 4777887776542 2 13678999998874 6689999999999999987766554 111000
Q ss_pred cccccccccCccCCCCcccccceeEEEEecCHHHHHHHHHHHHHH
Q 035724 772 VTLHSSWESGAEEGLGETERPILRQLFVTVSPKLCFAVKQHISQM 816 (1939)
Q Consensus 772 ~~~~~~~~~~~~~~~g~~~~~~l~qvfVT~S~~L~~~vk~~~~~l 816 (1939)
......+.|+++=...|+.++.+.+.++
T Consensus 93 -----------------~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 120 (236)
T 2pl3_A 93 -----------------TSTDGLGVLIISPTRELAYQTFEVLRKV 120 (236)
T ss_dssp -----------------CGGGCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred -----------------cccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 0012246899999999999887666554
No 438
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=87.37 E-value=0.46 Score=53.38 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.0
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
..+++|.||||+||||++..++..+
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 5789999999999999999888653
No 439
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=87.29 E-value=0.28 Score=53.30 Aligned_cols=22 Identities=36% Similarity=0.583 Sum_probs=19.5
Q ss_pred cEEEEeCCCCCchhHHHHHHHH
Q 035724 231 TVELIWGPPGTGKTKTVSMLLD 252 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~ 252 (1939)
.+.+|.||||+||||++..+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4678999999999999998864
No 440
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=87.21 E-value=0.38 Score=52.87 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=20.4
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHH
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
-+.+|.||||+||||++..|.+.+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999998887654
No 441
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=87.19 E-value=0.35 Score=52.53 Aligned_cols=25 Identities=20% Similarity=0.454 Sum_probs=21.3
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
..+.+|.||||+||||++..+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999887654
No 442
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=87.18 E-value=0.22 Score=56.71 Aligned_cols=20 Identities=40% Similarity=0.768 Sum_probs=17.5
Q ss_pred cCCcEEEecCCCChHHHHHH
Q 035724 729 FPKSSFILGRSGTGKTTILT 748 (1939)
Q Consensus 729 ~p~~~~vlGrSGTGKTT~~L 748 (1939)
.|.++++.|.|||||||++-
T Consensus 38 ~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 46789999999999999874
No 443
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=87.15 E-value=0.48 Score=56.03 Aligned_cols=38 Identities=16% Similarity=0.280 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 211 DSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 211 ~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
+.+.+.+...+.. .++.+|+||+|+|||+++..+++..
T Consensus 18 ~~el~~L~~~l~~------~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 18 EEESRKLEESLEN------YPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp HHHHHHHHHHHHH------CSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhc------CCeEEEECCCcCCHHHHHHHHHHHc
Confidence 4566677777763 2688999999999999999887653
No 444
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=87.15 E-value=0.22 Score=52.78 Aligned_cols=16 Identities=19% Similarity=0.156 Sum_probs=14.4
Q ss_pred EEEecCCCChHHHHHH
Q 035724 733 SFILGRSGTGKTTILT 748 (1939)
Q Consensus 733 ~~vlGrSGTGKTT~~L 748 (1939)
++|.|.||+||||++-
T Consensus 4 i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEECSSSSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6799999999999874
No 445
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=87.10 E-value=0.34 Score=53.15 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=21.0
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDF 253 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~ 253 (1939)
..+..|.||+|+||||++..+...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 468899999999999999988765
No 446
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=87.03 E-value=0.34 Score=53.60 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=25.1
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEE
Q 035724 229 KATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFC 263 (1939)
Q Consensus 229 ~~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~ 263 (1939)
...+.+|.||||+||||++..++. .....+++.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i 51 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYV 51 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEE
Confidence 357899999999999999988876 333444443
No 447
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=87.00 E-value=0.34 Score=53.07 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=21.1
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
..+..|.||||+||||++..+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4678999999999999998886544
No 448
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=86.99 E-value=3.4 Score=38.68 Aligned_cols=86 Identities=10% Similarity=-0.095 Sum_probs=59.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc----c---CH---H
Q 035724 1124 LREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKG----K---FF---S 1193 (1939)
Q Consensus 1124 y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~ka----g---d~---d 1193 (1939)
+...+..|...|++++|+++|.++- ++.. .....+...|.++...|+|++|.++|.++ . .. .
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~------~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 80 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAI------QLDP--EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA 80 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHH------HHCC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH------HhCc--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence 3466777788888888877776542 2210 11234667799999999999999999887 2 22 1
Q ss_pred HHHHHHHhc-CChHHHHHHHHhhhh
Q 035724 1194 ECLAVCSKG-KLFEIGLQYMNHWKQ 1217 (1939)
Q Consensus 1194 kAI~my~k~-k~fd~airLv~q~~d 1217 (1939)
....++.+. +++++|++.+++..+
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 233466788 999999998885444
No 449
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=86.98 E-value=0.38 Score=51.94 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=20.9
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
+.+.+|.||||+||||++..+.+.+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4577999999999999998887543
No 450
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=86.92 E-value=0.72 Score=49.75 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=14.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHc
Q 035724 1166 LEKAGECFFLAGCYKLAADVYAKG 1189 (1939)
Q Consensus 1166 ~~qaAe~fE~~G~y~eAAelY~ka 1189 (1939)
+...|..+...|+|.+|.++|.++
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~a 64 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEA 64 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445566666666666666666554
No 451
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=86.91 E-value=0.47 Score=51.55 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=19.7
Q ss_pred EEEEeCCCCCchhHHHHHHHHHH
Q 035724 232 VELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 232 v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
+.+|.||||+||||.+..+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 45899999999999999887655
No 452
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=86.90 E-value=1.7 Score=50.12 Aligned_cols=86 Identities=14% Similarity=0.176 Sum_probs=59.9
Q ss_pred CCHHHHHHhhcCCCCCCcccccccCHHHHhhhcc---CCcEEEecCCCChHHHHHHHHHHHHhHhhhhhhcccccCCCcc
Q 035724 696 LSSGAVSHLLSDRDGGELDLPFEVTDEQLEMILF---PKSSFILGRSGTGKTTILTMKLFQKEKLHHMAMDGFYGVNNSV 772 (1939)
Q Consensus 696 ~s~~~~~~il~~~~~~~~d~pf~l~~ee~~iI~~---p~~~~vlGrSGTGKTT~~L~kl~~~e~~~~~~~~~~~~~~~~~ 772 (1939)
+++.+++.|-. . | --+++|-|.++|.. ...++|.+..|||||++.+.-++.. +.....
T Consensus 61 l~~~l~~~l~~-~-g-----~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~-----l~~~~~------- 121 (262)
T 3ly5_A 61 VNENTLKAIKE-M-G-----FTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVEL-----IVKLRF------- 121 (262)
T ss_dssp CCHHHHHHHHH-T-T-----CCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHH-----HHHTTC-------
T ss_pred cCHHHHHHHHH-C-C-----CCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHH-----HHhccc-------
Confidence 67777777655 2 2 12589999999863 6689999999999999988877765 111000
Q ss_pred ccccccccCccCCCCcccccceeEEEEecCHHHHHHHHHHHHHH
Q 035724 773 TLHSSWESGAEEGLGETERPILRQLFVTVSPKLCFAVKQHISQM 816 (1939)
Q Consensus 773 ~~~~~~~~~~~~~~g~~~~~~l~qvfVT~S~~L~~~vk~~~~~l 816 (1939)
......+.|+++=...|+.++.+.+.++
T Consensus 122 ----------------~~~~~~~~lil~Pt~~La~q~~~~~~~~ 149 (262)
T 3ly5_A 122 ----------------MPRNGTGVLILSPTRELAMQTFGVLKEL 149 (262)
T ss_dssp ----------------CGGGCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred ----------------cccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 0011245899999999999886666554
No 453
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=86.87 E-value=0.43 Score=51.80 Aligned_cols=27 Identities=37% Similarity=0.498 Sum_probs=22.8
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHh
Q 035724 229 KATVELIWGPPGTGKTKTVSMLLDFCF 255 (1939)
Q Consensus 229 ~~~v~LI~GPPGTGKTtti~~li~~~l 255 (1939)
.+.+.+|.|+||+||||++..+...+-
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 456789999999999999998886654
No 454
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=86.86 E-value=1.1 Score=53.13 Aligned_cols=83 Identities=20% Similarity=0.308 Sum_probs=60.6
Q ss_pred cCCHHHHHHhhcCCCCCCcccccccCHHHHhhhcc---C-CcEEEecCCCChHHHHHHHHHHHHhHhhhhhhcccccCCC
Q 035724 695 SLSSGAVSHLLSDRDGGELDLPFEVTDEQLEMILF---P-KSSFILGRSGTGKTTILTMKLFQKEKLHHMAMDGFYGVNN 770 (1939)
Q Consensus 695 ~~s~~~~~~il~~~~~~~~d~pf~l~~ee~~iI~~---p-~~~~vlGrSGTGKTT~~L~kl~~~e~~~~~~~~~~~~~~~ 770 (1939)
.+++.+.+.+-.. | ...++|-|+++|.. . ..++|.+..|||||++++.-++.. +.+
T Consensus 12 ~l~~~~~~~l~~~--g-----~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~------~~~------- 71 (367)
T 1hv8_A 12 NLSDNILNAIRNK--G-----FEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIEL------VNE------- 71 (367)
T ss_dssp SCCHHHHHHHHHH--T-----CCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHH------SCS-------
T ss_pred CCCHHHHHHHHHc--C-----CCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHH------hcc-------
Confidence 4777777766542 2 12689999999975 3 578999999999999998877765 110
Q ss_pred ccccccccccCccCCCCcccccceeEEEEecCHHHHHHHHHHHHHHH
Q 035724 771 SVTLHSSWESGAEEGLGETERPILRQLFVTVSPKLCFAVKQHISQMI 817 (1939)
Q Consensus 771 ~~~~~~~~~~~~~~~~g~~~~~~l~qvfVT~S~~L~~~vk~~~~~l~ 817 (1939)
....+.++++-+..|+.++.+.+.++-
T Consensus 72 --------------------~~~~~~lil~P~~~L~~q~~~~~~~~~ 98 (367)
T 1hv8_A 72 --------------------NNGIEAIILTPTRELAIQVADEIESLK 98 (367)
T ss_dssp --------------------SSSCCEEEECSCHHHHHHHHHHHHHHH
T ss_pred --------------------cCCCcEEEEcCCHHHHHHHHHHHHHHh
Confidence 012458999999999999877777653
No 455
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=86.74 E-value=0.34 Score=53.81 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=25.8
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHh-cCCcEEEE
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCF-TKASLIFC 263 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l-~~a~vI~~ 263 (1939)
..+.+|.||||+||||++..++..+. ....+++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~ 57 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYV 57 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 56899999999999999998884443 34455544
No 456
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.73 E-value=1.8 Score=43.16 Aligned_cols=91 Identities=10% Similarity=0.021 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC--------HH
Q 035724 1122 VNLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF--------FS 1193 (1939)
Q Consensus 1122 ~~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd--------~d 1193 (1939)
..+...|..|...|++++|+++|.++-....--.. ....+...|.++...|+|++|.++|.++-. +-
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQD-----QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchH-----HHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 35677888888899999998888776432110000 012356679999999999999999988622 12
Q ss_pred HHHHHHHhcCChHHHHHHHHhhhh
Q 035724 1194 ECLAVCSKGKLFEIGLQYMNHWKQ 1217 (1939)
Q Consensus 1194 kAI~my~k~k~fd~airLv~q~~d 1217 (1939)
....++...+++++|+...++..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 233467778888888888775433
No 457
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=86.72 E-value=0.24 Score=69.41 Aligned_cols=85 Identities=18% Similarity=0.132 Sum_probs=56.2
Q ss_pred cCCcEEEEeCCcccchHHhhc--cccC-CCcceEEEEeccccCCcceeccccccccccCCHHHHHHhcCCcccccccccc
Q 035724 277 EQLKFLVIDEAAQLKEVESAI--PLKL-PGIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSNLGQAKHLLSIQYR 353 (1939)
Q Consensus 277 ~~fdvVIIDEASQ~~E~e~li--pL~~-~~~~rlVLiGD~~QLpPvV~s~~~~~~gl~~SLFeRL~~~~~~~~~L~~QYR 353 (1939)
..|++|+|||..-.+..+.-+ .+.. .+...+++|||++|--= .-.|-+...|.+........+.|.++||
T Consensus 376 ~r~~~ilVDEfQDtn~~Q~~il~~L~~~~~~~~l~~VGD~kQSIY-------~FRGAd~~~~~~~~~~~~~~~~L~~NyR 448 (1180)
T 1w36_B 376 TRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIY-------AFRGADIFTYMKARSEVHAHYTLDTNWR 448 (1180)
T ss_dssp HHCSEEEECSGGGCCHHHHHHHHHHHTTCTTCEEEEEECGGGCCC-------GGGTCCHHHHHHHHHHCCCEEECCEETT
T ss_pred hCCCEEEEECCccCCHHHHHHHHHHHcCCCCCeEEEEECCccccc-------cCcCCCHHHHHHHHHhcCCceeCCCCcC
Confidence 459999999999998874333 2322 13468999999999310 0011111123333332345788999999
Q ss_pred CChhhhccCcccccC
Q 035724 354 MHPSISSFPNSYFYD 368 (1939)
Q Consensus 354 mhp~I~~f~S~~FY~ 368 (1939)
++|.|.++.|..|-.
T Consensus 449 S~~~Il~~~N~lf~~ 463 (1180)
T 1w36_B 449 SAPGMVNSVNKLFSQ 463 (1180)
T ss_dssp SCHHHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHHhc
Confidence 999999999987754
No 458
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=86.71 E-value=0.87 Score=51.86 Aligned_cols=40 Identities=23% Similarity=0.259 Sum_probs=31.8
Q ss_pred cccccccCHHHHhhhcc---CCcEEEecCCCChHHHHHHHHHH
Q 035724 713 LDLPFEVTDEQLEMILF---PKSSFILGRSGTGKTTILTMKLF 752 (1939)
Q Consensus 713 ~d~pf~l~~ee~~iI~~---p~~~~vlGrSGTGKTT~~L~kl~ 752 (1939)
..+.+.++|.|++.+.. .+.++|.|..|||||.+++.=+.
T Consensus 88 ~~~~~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~ 130 (237)
T 2fz4_A 88 FDAEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAIN 130 (237)
T ss_dssp CCCCCCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHH
T ss_pred ccCCCCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHH
Confidence 34567999999998873 44599999999999999876443
No 459
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=86.71 E-value=1.3 Score=46.52 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=14.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHc
Q 035724 1166 LEKAGECFFLAGCYKLAADVYAKG 1189 (1939)
Q Consensus 1166 ~~qaAe~fE~~G~y~eAAelY~ka 1189 (1939)
+...|.++...|+|++|.++|.++
T Consensus 47 ~~~lg~~~~~~~~~~~A~~~~~~a 70 (177)
T 2e2e_A 47 WALLGEYYLWQNDYSNSLLAYRQA 70 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445566666666666666666654
No 460
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=86.67 E-value=3.7 Score=40.62 Aligned_cols=85 Identities=9% Similarity=-0.039 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC--------HH
Q 035724 1122 VNLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF--------FS 1193 (1939)
Q Consensus 1122 ~~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd--------~d 1193 (1939)
..+...+..|...|++++|+++|.++- ++.- .....+...|.++...|+|++|.+.|.++-. +-
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al------~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 81 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAI------TRNP--LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF 81 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH------HHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHH------hhCc--CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHH
Confidence 356778888888889988888876543 2210 1123467789999999999999999988732 22
Q ss_pred HHHHHHHhcCChHHHHHHHHh
Q 035724 1194 ECLAVCSKGKLFEIGLQYMNH 1214 (1939)
Q Consensus 1194 kAI~my~k~k~fd~airLv~q 1214 (1939)
....+|.+.+++++|+...++
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~ 102 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQR 102 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHH
Confidence 344467788899988888774
No 461
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=86.66 E-value=0.35 Score=53.26 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=21.2
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
..+.+|.||||+||||++..|.+.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999887654
No 462
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=86.64 E-value=0.2 Score=53.40 Aligned_cols=19 Identities=37% Similarity=0.723 Sum_probs=16.8
Q ss_pred CCcEEEecCCCChHHHHHH
Q 035724 730 PKSSFILGRSGTGKTTILT 748 (1939)
Q Consensus 730 p~~~~vlGrSGTGKTT~~L 748 (1939)
+.+++|.|.+||||||++.
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 5678999999999999875
No 463
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=86.61 E-value=0.4 Score=54.34 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=21.4
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
+.+.+|.||||+||||.+..|.+..
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 5788899999999999998887544
No 464
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=86.60 E-value=0.38 Score=52.27 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=21.7
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
..+.+|.||+|+||||++..|....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4688999999999999999887654
No 465
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=86.56 E-value=0.35 Score=52.25 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=20.0
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHH
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
++.+|.||||+||||+...+.+.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 456899999999999998887543
No 466
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=86.48 E-value=0.32 Score=56.11 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.0
Q ss_pred EEEEeCCCCCchhHHHHHHHHHH
Q 035724 232 VELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 232 v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
+.+|.|||||||||++..|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 57899999999999999887644
No 467
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=86.48 E-value=0.37 Score=52.49 Aligned_cols=24 Identities=42% Similarity=0.511 Sum_probs=20.5
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDF 253 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~ 253 (1939)
....+|.||||+||||+...+.+.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 356799999999999999888765
No 468
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=86.47 E-value=0.4 Score=52.85 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=21.3
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
+.+.+|.||||+||||++..+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999887554
No 469
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=86.47 E-value=0.33 Score=52.40 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=20.4
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHH
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
.+.+|.||||+||||++..+.+.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999887544
No 470
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=86.41 E-value=0.97 Score=53.40 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=19.8
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDF 253 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~ 253 (1939)
..+..|.||+|+||||++..+...
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456777799999999999988833
No 471
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=86.37 E-value=0.42 Score=59.76 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=17.6
Q ss_pred CcEEEEeCCCCCchhHH-HHHHH
Q 035724 230 ATVELIWGPPGTGKTKT-VSMLL 251 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtt-i~~li 251 (1939)
..+.++.||+|||||.. +..++
T Consensus 19 ~~~~lv~a~TGsGKT~~~~~~~l 41 (451)
T 2jlq_A 19 KRLTIMDLHPGAGKTKRILPSIV 41 (451)
T ss_dssp TCEEEECCCTTSSCCTTHHHHHH
T ss_pred CCeEEEECCCCCCHhhHHHHHHH
Confidence 56789999999999994 55544
No 472
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=86.35 E-value=0.38 Score=52.34 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=21.3
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
+.+.+|.||||+||||++..+.+.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999998887654
No 473
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=86.34 E-value=0.22 Score=55.11 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=19.9
Q ss_pred EEEEeCCCCCchhHHHHHHHHHH
Q 035724 232 VELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 232 v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
+.+|.||+|+||||++..|++..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 45899999999999999887654
No 474
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=86.28 E-value=0.36 Score=53.46 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=21.7
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
..+.+|.||||+||||++..|.+.+
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 5678999999999999999887655
No 475
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=86.28 E-value=1.4 Score=50.20 Aligned_cols=77 Identities=12% Similarity=0.177 Sum_probs=52.5
Q ss_pred ccCHHHHhhhcc---CCcEEEecCCCChHHHHHHHHHHHHhHhhhhhhcccccCCCccccccccccCccCCCCcccccce
Q 035724 718 EVTDEQLEMILF---PKSSFILGRSGTGKTTILTMKLFQKEKLHHMAMDGFYGVNNSVTLHSSWESGAEEGLGETERPIL 794 (1939)
Q Consensus 718 ~l~~ee~~iI~~---p~~~~vlGrSGTGKTT~~L~kl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l 794 (1939)
+++|-|.++|.. ...+++.+..|||||.+.+.=++.. +...+.... . .......
T Consensus 45 ~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~-----l~~~~~~~~------------~------~~~~~~~ 101 (253)
T 1wrb_A 45 RPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINH-----LVCQDLNQQ------------R------YSKTAYP 101 (253)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----HHTTCC------------------------CCBCC
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHH-----HHhhccccc------------c------ccccCCc
Confidence 588999999874 5679999999999999988777665 111110000 0 0011235
Q ss_pred eEEEEecCHHHHHHHHHHHHHHH
Q 035724 795 RQLFVTVSPKLCFAVKQHISQMI 817 (1939)
Q Consensus 795 ~qvfVT~S~~L~~~vk~~~~~l~ 817 (1939)
+.|+++=...||.++.+.+.++.
T Consensus 102 ~~lil~Pt~~L~~q~~~~~~~~~ 124 (253)
T 1wrb_A 102 KCLILAPTRELAIQILSESQKFS 124 (253)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHH
T ss_pred eEEEEECCHHHHHHHHHHHHHHh
Confidence 79999999999999877766653
No 476
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=86.23 E-value=0.96 Score=55.29 Aligned_cols=67 Identities=19% Similarity=0.094 Sum_probs=51.7
Q ss_pred cccccCHHHHhhhcc---CCcEEEecCCCChHHHHHHHHHHHHhHhhhhhhcccccCCCccccccccccCccCCCCcccc
Q 035724 715 LPFEVTDEQLEMILF---PKSSFILGRSGTGKTTILTMKLFQKEKLHHMAMDGFYGVNNSVTLHSSWESGAEEGLGETER 791 (1939)
Q Consensus 715 ~pf~l~~ee~~iI~~---p~~~~vlGrSGTGKTT~~L~kl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 791 (1939)
++|+++|-|.++|.. ...++|.+..|||||++.+.-+... +.
T Consensus 18 ~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~------~~----------------------------- 62 (414)
T 3oiy_A 18 FGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWL------AR----------------------------- 62 (414)
T ss_dssp HSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHH------HT-----------------------------
T ss_pred cCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHH------hc-----------------------------
Confidence 467889999999973 5589999999999999777665543 10
Q ss_pred cceeEEEEecCHHHHHHHHHHHHHH
Q 035724 792 PILRQLFVTVSPKLCFAVKQHISQM 816 (1939)
Q Consensus 792 ~~l~qvfVT~S~~L~~~vk~~~~~l 816 (1939)
...+.||++=...||.++.+.+.++
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~ 87 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKL 87 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHH
Confidence 0135899999999999987777665
No 477
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=86.17 E-value=0.3 Score=53.31 Aligned_cols=18 Identities=50% Similarity=0.765 Sum_probs=0.0
Q ss_pred CCcEEEecCCCChHHHHH
Q 035724 730 PKSSFILGRSGTGKTTIL 747 (1939)
Q Consensus 730 p~~~~vlGrSGTGKTT~~ 747 (1939)
|..+.|+|+||+||||++
T Consensus 1 ~~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCCEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
No 478
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=86.12 E-value=0.47 Score=52.33 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=22.6
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHh
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCF 255 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l 255 (1939)
..+..|.||+|+||||++..+...+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57889999999999999998886654
No 479
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=86.12 E-value=0.38 Score=54.29 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.7
Q ss_pred CcEEEEeCCCCCchhHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLD 252 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~ 252 (1939)
..+..|.||+|+||||++..++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 57899999999999999998873
No 480
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=86.10 E-value=0.42 Score=52.68 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=21.2
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
+.+.+|.||||+||||++..+.+.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999887543
No 481
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=86.06 E-value=0.39 Score=51.61 Aligned_cols=23 Identities=22% Similarity=0.164 Sum_probs=19.3
Q ss_pred EEEEeCCCCCchhHHHHHHHHHH
Q 035724 232 VELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 232 v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
..+|.||||+||||+...|.+.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 35889999999999998887544
No 482
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=86.05 E-value=0.29 Score=52.44 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=15.0
Q ss_pred CcEEEecCCCChHHHHH
Q 035724 731 KSSFILGRSGTGKTTIL 747 (1939)
Q Consensus 731 ~~~~vlGrSGTGKTT~~ 747 (1939)
.-++|.|-||+||||++
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34789999999999987
No 483
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=85.93 E-value=0.46 Score=53.11 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=20.9
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
....+|.||||+||||.+..|.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3467999999999999999887654
No 484
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=85.88 E-value=0.32 Score=51.87 Aligned_cols=22 Identities=32% Similarity=0.647 Sum_probs=17.0
Q ss_pred CcEEEecCCCChHHHHHHHHHHHH
Q 035724 731 KSSFILGRSGTGKTTILTMKLFQK 754 (1939)
Q Consensus 731 ~~~~vlGrSGTGKTT~~L~kl~~~ 754 (1939)
.-++|+|.||+||||++ |++..
T Consensus 5 ~~i~l~G~~GsGKSTl~--~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIG--RQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHH--HHHHH
T ss_pred CeEEEECCCCCCHHHHH--HHHHH
Confidence 35789999999999976 44443
No 485
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=85.86 E-value=0.38 Score=52.62 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=19.1
Q ss_pred EEEeCCCCCchhHHHHHHHHHH
Q 035724 233 ELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 233 ~LI~GPPGTGKTtti~~li~~~ 254 (1939)
..|.||+|+||||++..+...+
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999887554
No 486
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=85.76 E-value=0.34 Score=57.48 Aligned_cols=19 Identities=47% Similarity=0.712 Sum_probs=16.5
Q ss_pred CCcEEEecCCCChHHHHHH
Q 035724 730 PKSSFILGRSGTGKTTILT 748 (1939)
Q Consensus 730 p~~~~vlGrSGTGKTT~~L 748 (1939)
+.|++|.|.|||||||++-
T Consensus 37 ~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4589999999999999864
No 487
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=85.70 E-value=0.78 Score=55.25 Aligned_cols=26 Identities=35% Similarity=0.425 Sum_probs=22.3
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 229 KATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 229 ~~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
...+..|.||||+||||++..++..+
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 35788999999999999999888544
No 488
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=85.70 E-value=0.44 Score=52.88 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=18.7
Q ss_pred EEEeCCCCCchhHHHHHHHHHH
Q 035724 233 ELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 233 ~LI~GPPGTGKTtti~~li~~~ 254 (1939)
.+|.||||+||||++..+.+.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999887544
No 489
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=85.68 E-value=0.49 Score=56.05 Aligned_cols=36 Identities=22% Similarity=0.393 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 211 DSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 211 ~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
+.+.+.+.. +. .++.+|+||||+|||+++..+.+..
T Consensus 19 ~~el~~L~~-l~-------~~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 19 EKEIEKLKG-LR-------APITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp HHHHHHHHH-TC-------SSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hc-------CCcEEEECCCCCCHHHHHHHHHHhc
Confidence 345556666 54 1688999999999999999888665
No 490
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=85.66 E-value=0.34 Score=52.05 Aligned_cols=24 Identities=38% Similarity=0.482 Sum_probs=16.3
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDF 253 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~ 253 (1939)
+.+.+|.|+||+||||++..+.+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 357799999999999999888654
No 491
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=85.62 E-value=0.32 Score=52.59 Aligned_cols=18 Identities=28% Similarity=0.632 Sum_probs=15.6
Q ss_pred CcEEEecCCCChHHHHHH
Q 035724 731 KSSFILGRSGTGKTTILT 748 (1939)
Q Consensus 731 ~~~~vlGrSGTGKTT~~L 748 (1939)
..++++|.||+||||++-
T Consensus 6 ~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 347899999999999875
No 492
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=85.55 E-value=1.1 Score=61.74 Aligned_cols=41 Identities=24% Similarity=0.388 Sum_probs=35.8
Q ss_pred ccccccCHHHHhhhcc---CCcEEEecCCCChHHHHHHHHHHHH
Q 035724 714 DLPFEVTDEQLEMILF---PKSSFILGRSGTGKTTILTMKLFQK 754 (1939)
Q Consensus 714 d~pf~l~~ee~~iI~~---p~~~~vlGrSGTGKTT~~L~kl~~~ 754 (1939)
.+||+++|-|.++|.. ...++|.|..|+|||+|+++=+...
T Consensus 35 ~~~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~ 78 (997)
T 4a4z_A 35 SWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMA 78 (997)
T ss_dssp CCSSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHH
Confidence 4999999999999975 5679999999999999988866554
No 493
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=85.54 E-value=0.37 Score=55.42 Aligned_cols=19 Identities=42% Similarity=0.698 Sum_probs=17.2
Q ss_pred cCCcEEEecCCCChHHHHH
Q 035724 729 FPKSSFILGRSGTGKTTIL 747 (1939)
Q Consensus 729 ~p~~~~vlGrSGTGKTT~~ 747 (1939)
.+.|+++.|.+|||||+++
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4689999999999999987
No 494
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=85.53 E-value=0.33 Score=53.50 Aligned_cols=19 Identities=37% Similarity=0.688 Sum_probs=16.0
Q ss_pred CCcEEEecCCCChHHHHHH
Q 035724 730 PKSSFILGRSGTGKTTILT 748 (1939)
Q Consensus 730 p~~~~vlGrSGTGKTT~~L 748 (1939)
+.-++|.|.||+||||++-
T Consensus 18 ~~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SSCEEEECSTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4458899999999999863
No 495
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=85.52 E-value=0.3 Score=56.62 Aligned_cols=19 Identities=42% Similarity=0.670 Sum_probs=16.8
Q ss_pred cCCcEEEecCCCChHHHHH
Q 035724 729 FPKSSFILGRSGTGKTTIL 747 (1939)
Q Consensus 729 ~p~~~~vlGrSGTGKTT~~ 747 (1939)
.+.++++.|.|||||||++
T Consensus 50 ~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCSEEEEESSSSSSHHHHH
T ss_pred CCCeEEEECCCCCcHHHHH
Confidence 3567999999999999987
No 496
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=85.45 E-value=1.2 Score=42.32 Aligned_cols=63 Identities=21% Similarity=0.279 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHH
Q 035724 1064 SPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKC 1143 (1939)
Q Consensus 1064 tpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaec 1143 (1939)
+.+.|..+|..++..++|++|+.+|.++-.. +|. ....+...+..|...|++++|+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---------------------~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 60 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA---------------------QPQ-NPVGYSNKAMALIKLGEYTQAIQM 60 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---------------------CTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------------------CCC-CHHHHHHHHHHHHHhcCHHHHHHH
Confidence 4568999999999999999999999987321 111 123456778888888888888888
Q ss_pred HHHhC
Q 035724 1144 FYNLG 1148 (1939)
Q Consensus 1144 y~kag 1148 (1939)
|.++-
T Consensus 61 ~~~al 65 (111)
T 2l6j_A 61 CQQGL 65 (111)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
No 497
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=85.44 E-value=3.5 Score=39.69 Aligned_cols=84 Identities=13% Similarity=0.123 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccCHH---------
Q 035724 1123 NLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKFFS--------- 1193 (1939)
Q Consensus 1123 ~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd~d--------- 1193 (1939)
.+...|..|...|++++|+++|.++-. +.. .....+...|.++...|+|++|.++|.++-...
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~------~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 77 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKE------LDP--TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQ 77 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH------HCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHh------cCC--ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHH
Confidence 356677777888888888777765432 210 112335677899999999999999998863321
Q ss_pred ------HHHHHHHhcCChHHHHHHHHh
Q 035724 1194 ------ECLAVCSKGKLFEIGLQYMNH 1214 (1939)
Q Consensus 1194 ------kAI~my~k~k~fd~airLv~q 1214 (1939)
....++.+.+++++|+...++
T Consensus 78 ~~~~~~~la~~~~~~~~~~~A~~~~~~ 104 (131)
T 1elr_A 78 IAKAYARIGNSYFKEEKYKDAIHFYNK 104 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 123356677788877777764
No 498
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=85.44 E-value=0.31 Score=51.41 Aligned_cols=16 Identities=31% Similarity=0.572 Sum_probs=14.3
Q ss_pred EEEecCCCChHHHHHH
Q 035724 733 SFILGRSGTGKTTILT 748 (1939)
Q Consensus 733 ~~vlGrSGTGKTT~~L 748 (1939)
++|.|.||+||||++-
T Consensus 4 I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 5799999999999874
No 499
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=85.38 E-value=0.38 Score=53.46 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=18.5
Q ss_pred EEEeCCCCCchhHHHHHHHHHH
Q 035724 233 ELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 233 ~LI~GPPGTGKTtti~~li~~~ 254 (1939)
.+|.||||+||||++..+.+.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999998887543
No 500
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=85.36 E-value=2.5 Score=50.60 Aligned_cols=84 Identities=15% Similarity=0.211 Sum_probs=62.0
Q ss_pred cCCHHHHHHhhcCCCCCCcccccccCHHHHhhhcc-----CCcEEEecCCCChHHHHHHHHHHHHhHhhhhhhcccccCC
Q 035724 695 SLSSGAVSHLLSDRDGGELDLPFEVTDEQLEMILF-----PKSSFILGRSGTGKTTILTMKLFQKEKLHHMAMDGFYGVN 769 (1939)
Q Consensus 695 ~~s~~~~~~il~~~~~~~~d~pf~l~~ee~~iI~~-----p~~~~vlGrSGTGKTT~~L~kl~~~e~~~~~~~~~~~~~~ 769 (1939)
.+++.+++.|-.. | ...++|-|.++|.. +..++|.+..|||||++++.-++.. +.+
T Consensus 11 ~l~~~l~~~l~~~--~-----~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~------~~~------ 71 (395)
T 3pey_A 11 GLAPELLKGIYAM--K-----FQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTR------VNP------ 71 (395)
T ss_dssp CCCHHHHHHHHHT--T-----CCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHH------CCT------
T ss_pred CCCHHHHHHHHHC--C-----CCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHH------hcc------
Confidence 4677787777663 2 23689999999974 2679999999999999998877765 100
Q ss_pred CccccccccccCccCCCCcccccceeEEEEecCHHHHHHHHHHHHHHH
Q 035724 770 NSVTLHSSWESGAEEGLGETERPILRQLFVTVSPKLCFAVKQHISQMI 817 (1939)
Q Consensus 770 ~~~~~~~~~~~~~~~~~g~~~~~~l~qvfVT~S~~L~~~vk~~~~~l~ 817 (1939)
.....+.||++-+..|+.++.+.+.++.
T Consensus 72 --------------------~~~~~~~lil~P~~~L~~q~~~~~~~~~ 99 (395)
T 3pey_A 72 --------------------EDASPQAICLAPSRELARQTLEVVQEMG 99 (395)
T ss_dssp --------------------TCCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred --------------------CCCCccEEEECCCHHHHHHHHHHHHHHh
Confidence 0012358999999999999888777654
Done!