BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035725
         (86 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1TEZ|A Chain A, Complex Between Dna And The Dna Photolyase From Anacystis
           Nidulans
 pdb|1TEZ|B Chain B, Complex Between Dna And The Dna Photolyase From Anacystis
           Nidulans
 pdb|1TEZ|C Chain C, Complex Between Dna And The Dna Photolyase From Anacystis
           Nidulans
 pdb|1TEZ|D Chain D, Complex Between Dna And The Dna Photolyase From Anacystis
           Nidulans
          Length = 474

 Score = 28.5 bits (62), Expect = 0.88,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 5/49 (10%)

Query: 42  PTPKHETQEVLDIVPVGIGLICSLLFVIFPTRRH-GI----GYPITPGK 85
           PTP     E++D+ P  +  I  LL    PT +  G     G+P+ PG+
Sbjct: 161 PTPVATPTELVDLSPEQLTAIAPLLLSELPTLKQLGFDWDGGFPVEPGE 209


>pdb|1OWL|A Chain A, Structure Of Apophotolyase From Anacystis Nidulans
 pdb|1OWM|A Chain A, Data1:dna Photolyase  RECEIVED X-Rays Dose 1.2 Exp15
           PhotonsMM2
 pdb|1OWN|A Chain A, Data3:dna Photolyase  RECEIVED X-Rays Dose 4.8 Exp15
           PhotonsMM2
 pdb|1OWO|A Chain A, Data4:photoreduced Dna Photolyase  RECEIVED X-Rays Dose
           1.2 Exp15 PhotonsMM2
 pdb|1OWP|A Chain A, Data6:photoreduced Dna Pholyase  RECEIVED X-Rays Dose 4.8
           Exp15 PhotonsMM2
 pdb|1QNF|A Chain A, Structure Of Photolyase
          Length = 484

 Score = 28.5 bits (62), Expect = 0.88,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 5/49 (10%)

Query: 42  PTPKHETQEVLDIVPVGIGLICSLLFVIFPTRRH-GI----GYPITPGK 85
           PTP     E++D+ P  +  I  LL    PT +  G     G+P+ PG+
Sbjct: 162 PTPVATPTELVDLSPEQLTAIAPLLLSELPTLKQLGFDWDGGFPVEPGE 210


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.152    0.494 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,450,193
Number of Sequences: 62578
Number of extensions: 75167
Number of successful extensions: 100
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 100
Number of HSP's gapped (non-prelim): 2
length of query: 86
length of database: 14,973,337
effective HSP length: 54
effective length of query: 32
effective length of database: 11,594,125
effective search space: 371012000
effective search space used: 371012000
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)