BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035725
         (86 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P47136|BUD4_YEAST Bud site selection protein 4 OS=Saccharomyces cerevisiae (strain ATCC
            204508 / S288c) GN=BUD4 PE=1 SV=2
          Length = 1447

 Score = 30.0 bits (66), Expect = 4.2,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 37   LSCFFPTPKHETQEVLDIVPVG 58
            L C +  P+HE  E++D VPVG
Sbjct: 1154 LKCKYEKPRHELVEIVDKVPVG 1175


>sp|A6ZQ47|BUD4_YEAS7 Bud site selection protein 4 OS=Saccharomyces cerevisiae (strain
            YJM789) GN=BUD4 PE=3 SV=1
          Length = 1447

 Score = 30.0 bits (66), Expect = 4.2,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 37   LSCFFPTPKHETQEVLDIVPVG 58
            L C +  P+HE  E++D VPVG
Sbjct: 1154 LKCKYEKPRHELVEIVDKVPVG 1175


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.330    0.149    0.470 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,873,285
Number of Sequences: 539616
Number of extensions: 1268600
Number of successful extensions: 2513
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2511
Number of HSP's gapped (non-prelim): 3
length of query: 86
length of database: 191,569,459
effective HSP length: 56
effective length of query: 30
effective length of database: 161,350,963
effective search space: 4840528890
effective search space used: 4840528890
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)