Query 035725
Match_columns 86
No_of_seqs 100 out of 113
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 09:28:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035725.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035725hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1k2d_P MBP peptide, myelin bas 59.6 2.5 8.4E-05 22.0 0.4 12 70-81 10-21 (26)
2 3arc_M Photosystem II reaction 35.8 3.3 0.00011 23.1 -1.5 14 59-72 6-19 (36)
3 4frf_A Inositol polyphosphate 28.2 11 0.00037 27.8 -0.3 14 6-19 227-240 (275)
4 1q4k_B Serine/threonine-protei 28.1 12 0.00039 27.9 -0.2 14 72-85 74-87 (259)
5 2l0z_A Glycoprotein G2; zinc-b 24.8 14 0.00049 21.2 -0.2 11 70-80 1-11 (42)
6 3p34_A Serine/threonine-protei 18.2 24 0.00081 26.0 -0.2 14 72-85 56-69 (232)
7 2p92_A Hypothetical protein; u 17.2 1.9E+02 0.0065 19.1 4.2 52 9-60 45-111 (126)
8 2iew_A Inositol polyphosphate 17.0 23 0.00077 27.3 -0.6 15 7-21 317-331 (363)
9 2a98_A Inositol 1,4,5-trisphos 16.1 24 0.00083 26.1 -0.6 14 7-20 206-219 (259)
10 2keg_A PLNK; protein, peptide, 15.6 30 0.001 18.5 -0.1 9 72-80 3-11 (32)
No 1
>1k2d_P MBP peptide, myelin basic protein peptide with 8 residue linke; MHC class II, I-AU, H-2U, autoimmune disease; HET: NDG NAG; 2.20A {Mus musculus}
Probab=59.61 E-value=2.5 Score=22.02 Aligned_cols=12 Identities=42% Similarity=0.706 Sum_probs=9.4
Q ss_pred cCCCCccccCCC
Q 035725 70 FPTRRHGIGYPI 81 (86)
Q Consensus 70 FPt~RhGIGyp~ 81 (86)
-|+.|||-|--.
T Consensus 10 rpsqrhg~gsgs 21 (26)
T 1k2d_P 10 RPSQRHGTGSGS 21 (26)
T ss_pred CccccccCCCCc
Confidence 489999988643
No 2
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=35.83 E-value=3.3 Score=23.12 Aligned_cols=14 Identities=50% Similarity=1.061 Sum_probs=11.5
Q ss_pred HHHhhhheeeecCC
Q 035725 59 IGLICSLLFVIFPT 72 (86)
Q Consensus 59 vG~~~S~vF~iFPt 72 (86)
.|++++.+|...||
T Consensus 6 l~fiAt~Lfi~iPt 19 (36)
T 3arc_M 6 LGLIATALFVLVPS 19 (36)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 48888999988886
No 3
>4frf_A Inositol polyphosphate multikinase alpha; ATP grAsp, inositol phosphate kinase, transferase; 2.90A {Arabidopsis thaliana}
Probab=28.24 E-value=11 Score=27.81 Aligned_cols=14 Identities=14% Similarity=0.320 Sum_probs=12.1
Q ss_pred ccccccccchhhHH
Q 035725 6 LNKYRIRFIDGVHA 19 (86)
Q Consensus 6 ~s~yrLr~~DfvHA 19 (86)
.++.++|.|||.|+
T Consensus 227 ~~~~~vrmIDFAh~ 240 (275)
T 4frf_A 227 DARPQVKLVDFAHV 240 (275)
T ss_dssp CCCCEEEEECCTTC
T ss_pred CCcccEEEEECCCC
Confidence 45789999999996
No 4
>1q4k_B Serine/threonine-protein kinase PLK; six-stranded anti-parallel beta sheet with one alpha helix, transferase; HET: TPO; 2.30A {Homo sapiens} SCOP: d.223.1.2 d.223.1.2
Probab=28.14 E-value=12 Score=27.92 Aligned_cols=14 Identities=21% Similarity=0.653 Sum_probs=11.8
Q ss_pred CCCccccCCCCCCC
Q 035725 72 TRRHGIGYPITPGK 85 (86)
Q Consensus 72 t~RhGIGyp~~~~~ 85 (86)
|+++||||..+.|+
T Consensus 74 SnKYG~GYqLsdgs 87 (259)
T 1q4k_B 74 SDKYGLGYQLCDNS 87 (259)
T ss_dssp TTTTEEEEEETTSC
T ss_pred ccccceeEEecCCc
Confidence 67999999888765
No 5
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=24.80 E-value=14 Score=21.17 Aligned_cols=11 Identities=45% Similarity=0.576 Sum_probs=7.9
Q ss_pred cCCCCccccCC
Q 035725 70 FPTRRHGIGYP 80 (86)
Q Consensus 70 FPt~RhGIGyp 80 (86)
|||.||=+|=+
T Consensus 1 iPTHRHI~Ge~ 11 (42)
T 2l0z_A 1 XPTHRHIRGEA 11 (42)
T ss_dssp -CCEEECSSSS
T ss_pred CCccccccCCC
Confidence 79999977753
No 6
>3p34_A Serine/threonine-protein kinase PLK1; phosphoprotein binding domain, PLK1, kinase, transferase; HET: TPO; 1.40A {Homo sapiens} PDB: 3p2z_A* 3p2w_A* 3p35_A* 3p36_A* 3p37_A* 3q1i_A* 4e67_A* 4e9c_A* 4e9d_A* 2ogq_A 2ojs_A* 2ojx_A 3bzi_A* 3mhn_A* 3mhq_A 3mq8_B* 4h5x_B 4h70_B* 4h71_B* 4hco_B* ...
Probab=18.24 E-value=24 Score=25.95 Aligned_cols=14 Identities=21% Similarity=0.653 Sum_probs=11.7
Q ss_pred CCCccccCCCCCCC
Q 035725 72 TRRHGIGYPITPGK 85 (86)
Q Consensus 72 t~RhGIGyp~~~~~ 85 (86)
|+++|+||..+.|+
T Consensus 56 S~KYG~GYqLsdgs 69 (232)
T 3p34_A 56 SDKYGLGYQLCDNS 69 (232)
T ss_dssp TTTTEEEEEETTSC
T ss_pred cCccceEEEecCCc
Confidence 67899999888764
No 7
>2p92_A Hypothetical protein; unknown function; HET: MSE; 1.73A {Staphylococcus aureus} SCOP: d.64.2.1
Probab=17.16 E-value=1.9e+02 Score=19.06 Aligned_cols=52 Identities=19% Similarity=0.061 Sum_probs=33.0
Q ss_pred cccccchhhHHHHHHHHHHHHHhc--------------cCCcccccCCCC-CccHHHHHHHhhhHHH
Q 035725 9 YRIRFIDGVHAVLSVLVFAAVALR--------------DKNVLSCFFPTP-KHETQEVLDIVPVGIG 60 (86)
Q Consensus 9 yrLr~~DfvHA~lS~~VF~avAl~--------------D~nvv~Cf~P~~-~~~~~~ll~~lPl~vG 60 (86)
|-=...|.|=|..|++++.++--. +.+-..|-+|.. +++.+-+|+++=++.=
T Consensus 45 ~ae~G~DIVCAAVSaL~~~~vn~Le~~~~~~~~~~~~~~~G~l~~~l~~~~~~~~q~Ll~tm~lgL~ 111 (126)
T 2p92_A 45 HGEYGHDIVCAGASAVLFGSVNAIIGLTSERPDINYDDNGGHFHIRSVDTNNDEAQLILQTMLVSLQ 111 (126)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHSSCCCEEEEEGGGTEEEEECSCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCCcEEEehHHHHHHHHHHHHHHHhCCCceEEEecCCcEEEEEEcCCCcHHHHHHHHHHHHHHH
Confidence 444567999999999999887543 235568889874 4556677887766543
No 8
>2iew_A Inositol polyphosphate multikinase; ATP-grAsp fold related, transferase; 2.00A {Saccharomyces cerevisiae} PDB: 2if8_A*
Probab=16.96 E-value=23 Score=27.33 Aligned_cols=15 Identities=20% Similarity=0.281 Sum_probs=12.6
Q ss_pred cccccccchhhHHHH
Q 035725 7 NKYRIRFIDGVHAVL 21 (86)
Q Consensus 7 s~yrLr~~DfvHA~l 21 (86)
...++|.|||.|+..
T Consensus 317 ~~~~vrmIDFAH~~~ 331 (363)
T 2iew_A 317 SLSSMSLIDFAHSEI 331 (363)
T ss_dssp CCEEEEEECCTTEEE
T ss_pred CcceEEEEeCCCccc
Confidence 358999999999963
No 9
>2a98_A Inositol 1,4,5-trisphosphate 3-kinase C; structural genomics, structural genomics consortium, SGC, transferase; HET: I3P; 2.60A {Homo sapiens}
Probab=16.12 E-value=24 Score=26.14 Aligned_cols=14 Identities=21% Similarity=0.162 Sum_probs=12.3
Q ss_pred cccccccchhhHHH
Q 035725 7 NKYRIRFIDGVHAV 20 (86)
Q Consensus 7 s~yrLr~~DfvHA~ 20 (86)
++.++|.|||.|+.
T Consensus 206 ~~~~v~lIDFAh~~ 219 (259)
T 2a98_A 206 GLAKVWMIDFGKTV 219 (259)
T ss_dssp SCEEEEEECCTTEE
T ss_pred CcCcEEEEECCcee
Confidence 47899999999986
No 10
>2keg_A PLNK; protein, peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2keh_A
Probab=15.64 E-value=30 Score=18.52 Aligned_cols=9 Identities=56% Similarity=1.309 Sum_probs=6.6
Q ss_pred CCCccccCC
Q 035725 72 TRRHGIGYP 80 (86)
Q Consensus 72 t~RhGIGyp 80 (86)
++..||||.
T Consensus 3 srkngigya 11 (32)
T 2keg_A 3 SRKNGIGYA 11 (32)
T ss_dssp SSSSSSHHH
T ss_pred ccccCccee
Confidence 567889873
Done!