BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035726
(101 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 7 DEEWYFFSELQKKYANSDRVDRTTKVGSWKVTGGDRQIWDNCGKEVIGVKKNLVFHKGHG 66
++EWYFFS +KY N R +R G WK TG D+ I + + +G+KK LVF+ G
Sbjct: 73 EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKII--STEGQRVGIKKALVFYIGKA 130
Query: 67 SKAKKTSWVIHEYHSSKAS 85
K KT+W++HEY + S
Sbjct: 131 PKGTKTNWIMHEYRLIEPS 149
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 7 DEEWYFFSELQKKYANSDRVDRTTKVGSWKVTGGDRQIWDNCGKEVIGVKKNLVFHKGHG 66
++EWYFFS +KY N R +R G WK TG D+ I + + +G+KK LVF+ G
Sbjct: 70 EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKII--STEGQRVGIKKALVFYIGKA 127
Query: 67 SKAKKTSWVIHEYHSSKAS 85
K KT+W++HEY + S
Sbjct: 128 PKGTKTNWIMHEYRLIEPS 146
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 9 EWYFFSELQKKYANSDRVDRTTKVGSWKVTGGDRQIWDNCGKEVIGVKKNLVFHKGHGSK 68
EWYFF+ +KY N R +R G WK TG D+ + +G+KK LVF+ G +
Sbjct: 70 EWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPR--GRTLGIKKALVFYAGKAPR 127
Query: 69 AKKTSWVIHEYH 80
KT W++HEY
Sbjct: 128 GVKTDWIMHEYR 139
>pdb|2UUR|A Chain A, N-Terminal Nc4 Domain Of Collagen Ix
Length = 245
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 11/56 (19%)
Query: 43 QIWDNCGKEVIGVKKNLVFHKGHGSKAKKTSWVIHEYHSSKASIHQAISSVLYNLF 98
QI D+ GKE +G+K N +T V+ Y S+ A S L +LF
Sbjct: 109 QIQDSSGKEQVGIKIN-----------GQTQSVVFSYKGLDGSLQTAAFSNLSSLF 153
>pdb|1DMZ|A Chain A, A Refined Nmr Structure Of A New Phophopeptide-Binding
Domain Containing The Fha2 Of Rad53
pdb|1FHQ|A Chain A, Refined Solution Structure Of The Fha2 Domain Of Rad53
pdb|1FHR|A Chain A, Solution Structure Of The Fha2 Domain Of Rad53 Complexed
With A Phosphotyrosyl Peptide
pdb|1J4K|A Chain A, Solution Structure Of The Fha2 Domain Of Rad53 Complexed
With A Phosphotyrosyl Peptide Derived From Rad9
pdb|1J4L|A Chain A, Solution Structure Of The Fha2 Domain Of Rad53 Complexed
With A Phosphothreonyl Peptide Derived From Rad9
pdb|1K2M|A Chain A, Solution Structure Of The Fha2 Domain Of Rad53 Complexed
With A Phosphotyrosyl Peptide Derived From Rad9
pdb|1K2N|A Chain A, Solution Structure Of The Fha2 Domain Of Rad53 Complexed
With A Phosphothreonyl Peptide Derived From Rad9
Length = 158
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 10/67 (14%)
Query: 7 DEEWYFFSELQKKYANSDRVDRTTKVGSWKVTGGD--RQIWDNCGKEVIGVKKNL----- 59
D+ WY + Y N++R+ + TK + + GD + IWD K VIG K +
Sbjct: 73 DDIWYCHTGTNVSYLNNNRMIQGTK---FLLQDGDEIKIIWDKNNKFVIGFKVEINDTTG 129
Query: 60 VFHKGHG 66
+F++G G
Sbjct: 130 LFNEGLG 136
>pdb|3GVK|A Chain A, Crystal Structure Of Endo-Neuraminidase Nf Mutant
pdb|3GVK|B Chain B, Crystal Structure Of Endo-Neuraminidase Nf Mutant
pdb|3GVK|C Chain C, Crystal Structure Of Endo-Neuraminidase Nf Mutant
Length = 670
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 3 ATPDDEEWYFFSELQKKYANSDRVDRTTKVGSWKVTGGDRQIW 45
A P D+ + + + + Y SDR + SW +G D Q W
Sbjct: 87 AWPQDKAFVYENVIYAPYMGSDRAGVSRLHVSWVKSGDDGQTW 129
>pdb|1QU5|A Chain A, Nmr Structure Of A New Phosphotyrosine Binding Domain
Containing The Fha2 Domain Of Rad 53
Length = 182
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 10/67 (14%)
Query: 7 DEEWYFFSELQKKYANSDRVDRTTKVGSWKVTGGD--RQIWDNCGKEVIGVKKNL----- 59
D+ WY + Y N++R+ + TK + + GD + IWD K VIG K +
Sbjct: 97 DDIWYCHTGTNVSYLNNNRMIQGTK---FLLQDGDEIKIIWDKNNKFVIGFKVEINDTTG 153
Query: 60 VFHKGHG 66
+F++G G
Sbjct: 154 LFNEGLG 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,370,326
Number of Sequences: 62578
Number of extensions: 124764
Number of successful extensions: 275
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 262
Number of HSP's gapped (non-prelim): 16
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)