Query 035726
Match_columns 101
No_of_seqs 107 out of 710
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 09:29:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035726.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035726hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 7.3E-38 2.5E-42 218.6 12.0 95 3-99 64-167 (174)
2 1ut7_A No apical meristem prot 100.0 1.8E-37 6.1E-42 216.2 12.1 95 4-100 67-165 (171)
3 2oh5_A Polyhedrin, C-polyhedri 14.2 1.4E+02 0.0047 20.4 2.9 28 32-61 140-168 (248)
4 4fr9_A Uncharacterized protein 13.5 2E+02 0.0069 18.1 3.5 17 71-87 57-74 (144)
5 1m5a_B Insulin B chain; alpha 9.9 96 0.0033 15.0 0.7 9 8-16 21-29 (30)
6 2npn_A Putative cobalamin synt 9.5 71 0.0024 21.9 0.2 12 70-81 236-247 (251)
7 2xc8_A Gene 22 product; siphov 9.2 93 0.0032 19.6 0.6 12 88-99 69-80 (146)
8 3hia_A Choline binding protein 9.1 1.4E+02 0.0047 17.5 1.4 11 6-16 41-51 (94)
9 2hje_A Autoinducer 2 sensor ki 9.1 1.8E+02 0.0061 20.4 2.1 18 40-57 120-137 (221)
10 3rrr_A Fusion glycoprotein F0; 9.1 1.6E+02 0.0054 17.4 1.6 17 70-86 23-39 (84)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=7.3e-38 Score=218.63 Aligned_cols=95 Identities=36% Similarity=0.665 Sum_probs=80.6
Q ss_pred CCCCCCeEEEEEeccccccCCCcceeeccccEEEEcCcceeEEcCCCCeEEEEEEEeEeeeCCCCCCCccCeEEEEEEeC
Q 035726 3 ATPDDEEWYFFSELQKKYANSDRVDRTTKVGSWKVTGGDRQIWDNCGKEVIGVKKNLVFHKGHGSKAKKTSWVIHEYHSS 82 (101)
Q Consensus 3 a~~~~~~wYFFs~~~~k~~~g~r~~R~~~~G~Wk~~g~~~~I~~~~~g~~vG~kk~l~f~~g~~~~~~kT~W~M~EY~l~ 82 (101)
+..++++|||||++.+++++|.|++|+|++||||++|++++|.+ +|.+||+||+|+||.|++|++.+|+|+||||+|.
T Consensus 64 ~~~g~~ewYFFs~r~~ky~~g~R~nR~t~~G~WkatG~dk~I~~--~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~ 141 (174)
T 3ulx_A 64 ALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAP--RGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLA 141 (174)
T ss_dssp CSSCSSEEEEEEECCC-----CCSCEEETTEEEEECSCCEEECC--SSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEEC
T ss_pred hccCCceEEEEeccccccCCCCCceeecCCceEccCCCCcEEee--CCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeC
Confidence 34578899999999999999999999999999999999999986 5789999999999999999999999999999998
Q ss_pred CCCCC---------CCCCeEEEEEEE
Q 035726 83 KASIH---------QAISSVLYNLFF 99 (101)
Q Consensus 83 ~~~~~---------~~~~~VlCki~~ 99 (101)
.+... ..++|||||||.
T Consensus 142 ~~~~~~~~~~~~~~~~~~wVlCrvf~ 167 (174)
T 3ulx_A 142 DAGRAAAGAKKGSLRLDDWVLCRLYN 167 (174)
T ss_dssp SCC-----------CCSSEEEEEEEE
T ss_pred CCCCcccccccCCCCCCCEEEEEEEE
Confidence 86432 357999999996
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=1.8e-37 Score=216.16 Aligned_cols=95 Identities=37% Similarity=0.648 Sum_probs=78.5
Q ss_pred CCCCCeEEEEEeccccccCCCcceeeccccEEEEcCcceeEEcCCCCeEEEEEEEeEeeeCCCCCCCccCeEEEEEEeCC
Q 035726 4 TPDDEEWYFFSELQKKYANSDRVDRTTKVGSWKVTGGDRQIWDNCGKEVIGVKKNLVFHKGHGSKAKKTSWVIHEYHSSK 83 (101)
Q Consensus 4 ~~~~~~wYFFs~~~~k~~~g~r~~R~~~~G~Wk~~g~~~~I~~~~~g~~vG~kk~l~f~~g~~~~~~kT~W~M~EY~l~~ 83 (101)
..++++|||||++.+++++|.|.+|+|++|+||++|++++|.. ++.+||+|++|+||.++.|++.+|+|+||||+|..
T Consensus 67 ~~g~~ewyFFs~r~~k~~~g~R~~R~t~~G~Wk~tG~~k~I~~--~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~ 144 (171)
T 1ut7_A 67 LFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIIST--EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIE 144 (171)
T ss_dssp SSCSSEEEEEEECCC-------CCEEETTEEEEEEEEEEEEEE--TTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECC
T ss_pred hcCCccEEEEeccccccCCCCcccccCCCCEEeccCCCceEEe--cCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCC
Confidence 4678999999999999999999999999999999999999997 56999999999999999999999999999999987
Q ss_pred CCC----CCCCCeEEEEEEEE
Q 035726 84 ASI----HQAISSVLYNLFFF 100 (101)
Q Consensus 84 ~~~----~~~~~~VlCki~~~ 100 (101)
.+. ...++|||||||..
T Consensus 145 ~~~~~~~~~~~~~VlCrv~~k 165 (171)
T 1ut7_A 145 PSRRNGSTKLDDWVLCRIYKK 165 (171)
T ss_dssp CC--------CCEEEEEEEEC
T ss_pred CccccCcccCCCEEEEEEEEc
Confidence 642 24589999999974
No 3
>2oh5_A Polyhedrin, C-polyhedrin; beta barrel, intracellular crystal, nucleotide binding, STRU protein, RNA binding protein; HET: GTP ATP CTP; 1.98A {Bombyx mori cypovirus 1} PDB: 2oh6_A* 2oh7_A*
Probab=14.20 E-value=1.4e+02 Score=20.38 Aligned_cols=28 Identities=25% Similarity=0.486 Sum_probs=21.5
Q ss_pred ccEEEEcCcc-eeEEcCCCCeEEEEEEEeEe
Q 035726 32 VGSWKVTGGD-RQIWDNCGKEVIGVKKNLVF 61 (101)
Q Consensus 32 ~G~Wk~~g~~-~~I~~~~~g~~vG~kk~l~f 61 (101)
+--|.++|-. +.|.. +|++||.-..|..
T Consensus 140 shpweatgikyrki~~--dgeivgyshyfel 168 (248)
T 2oh5_A 140 SHPWEATGIKYRKIKR--DGEIVGYSHYFEL 168 (248)
T ss_dssp CCSCBCCGGGCEEEEE--TTEEEEEEEEEEC
T ss_pred cCCccccCceEEEeee--cceEeeeeeeeec
Confidence 3459999875 56765 8999999887765
No 4
>4fr9_A Uncharacterized protein; BLIP-like, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-biology; HET: MLY MSE; 1.20A {Bacteroides fragilis}
Probab=13.49 E-value=2e+02 Score=18.12 Aligned_cols=17 Identities=12% Similarity=0.468 Sum_probs=10.7
Q ss_pred ccCeEEEEEEeCC-CCCC
Q 035726 71 KTSWVIHEYHSSK-ASIH 87 (101)
Q Consensus 71 kT~W~M~EY~l~~-~~~~ 87 (101)
.-.|+|.|+.+.. +.+|
T Consensus 57 ~G~w~~te~ei~~~~~LP 74 (144)
T 4fr9_A 57 NANWLMTETELNSINNLP 74 (144)
T ss_dssp TSCEEEEEEEESSGGGSC
T ss_pred CCCEEEEEeccCchhhCc
Confidence 3378888888743 4444
No 5
>1m5a_B Insulin B chain; alpha helices, beta sheets, 3(10) helices, disulphide bridge hormone-growth factor complex; 1.20A {Sus scrofa} SCOP: g.1.1.1 PDB: 1aph_B 1b18_B 1b19_B 1b2a_B 1b2b_B 1b2c_B 1b2d_B 1b2e_B 1b2f_B 1b2g_B 1bph_B 1cph_B 1dph_B 1b17_B 1mpj_B 1wav_B 1zni_B 2a3g_B 2bn1_B 2bn3_B ...
Probab=9.91 E-value=96 Score=14.95 Aligned_cols=9 Identities=22% Similarity=0.597 Sum_probs=6.2
Q ss_pred CeEEEEEec
Q 035726 8 EEWYFFSEL 16 (101)
Q Consensus 8 ~~wYFFs~~ 16 (101)
..-|||+|+
T Consensus 21 dRGF~~~p~ 29 (30)
T 1m5a_B 21 ERGFFYTPK 29 (30)
T ss_dssp GGCEEECCC
T ss_pred cCccccCCC
Confidence 346888875
No 6
>2npn_A Putative cobalamin synthesis related protein; COBF, PSI-2, MAD, struc genomics, SAM, S-adenosylmethionine, MCSG; HET: MSE SAM; 1.60A {Corynebacterium diphtheriae}
Probab=9.45 E-value=71 Score=21.85 Aligned_cols=12 Identities=17% Similarity=0.703 Sum_probs=10.2
Q ss_pred CccCeEEEEEEe
Q 035726 70 KKTSWVIHEYHS 81 (101)
Q Consensus 70 ~kT~W~M~EY~l 81 (101)
.+.+|+|..|-|
T Consensus 236 ~~~~~~~d~~~~ 247 (251)
T 2npn_A 236 TEHGWIMDTYLL 247 (251)
T ss_dssp HHHSCCCEEEEE
T ss_pred hhhccHhHHHHh
Confidence 478999999976
No 7
>2xc8_A Gene 22 product; siphoviridae, GRAM-positive phage, viral protein; 2.35A {Bacillus phage SPP1}
Probab=9.17 E-value=93 Score=19.57 Aligned_cols=12 Identities=17% Similarity=0.343 Sum_probs=9.9
Q ss_pred CCCCeEEEEEEE
Q 035726 88 QAISSVLYNLFF 99 (101)
Q Consensus 88 ~~~~~VlCki~~ 99 (101)
++-.|.|||-|+
T Consensus 69 kkvswslckayl 80 (146)
T 2xc8_A 69 KKVSWSLCKAYL 80 (146)
T ss_dssp CCEEEEEEEEET
T ss_pred eeeeHHHHHHhc
Confidence 567899999885
No 8
>3hia_A Choline binding protein; beta hairpin; 2.38A {Streptococcus pneumoniae}
Probab=9.14 E-value=1.4e+02 Score=17.53 Aligned_cols=11 Identities=18% Similarity=0.785 Sum_probs=8.2
Q ss_pred CCCeEEEEEec
Q 035726 6 DDEEWYFFSEL 16 (101)
Q Consensus 6 ~~~~wYFFs~~ 16 (101)
.++.||||.+-
T Consensus 41 ~~g~wYYf~~~ 51 (94)
T 3hia_A 41 VNGSWYYLNSN 51 (94)
T ss_dssp ETTEEEEECTT
T ss_pred ECCEEEEECCC
Confidence 36789999753
No 9
>2hje_A Autoinducer 2 sensor kinase/phosphatase LUXQ; PER/ARNT/simple-minded (PAS) fold, autoinducer-2 (AI-2), quorum sensing, histidine sensor kinase; 1.70A {Vibrio harveyi} SCOP: d.110.6.3 PDB: 2hj9_C 1zhh_B*
Probab=9.08 E-value=1.8e+02 Score=20.40 Aligned_cols=18 Identities=28% Similarity=0.276 Sum_probs=13.7
Q ss_pred cceeEEcCCCCeEEEEEE
Q 035726 40 GDRQIWDNCGKEVIGVKK 57 (101)
Q Consensus 40 ~~~~I~~~~~g~~vG~kk 57 (101)
+..||++..+|+++|+--
T Consensus 120 RR~pIi~~~tGeVlG~Ly 137 (221)
T 2hje_A 120 RRVPILDPSTGEVLGFSF 137 (221)
T ss_dssp EEEEEEETTTTEEEEEEE
T ss_pred EccceecCCCCcEEEEEE
Confidence 446888888999999743
No 10
>3rrr_A Fusion glycoprotein F0; six-helix bundle, membrane fusion, viral protein; HET: NAG; 2.82A {Human respiratory syncytial virus} PDB: 3rrt_A
Probab=9.07 E-value=1.6e+02 Score=17.35 Aligned_cols=17 Identities=18% Similarity=0.300 Sum_probs=13.9
Q ss_pred CccCeEEEEEEeCCCCC
Q 035726 70 KKTSWVIHEYHSSKASI 86 (101)
Q Consensus 70 ~kT~W~M~EY~l~~~~~ 86 (101)
.+|+|-|.-+.|.....
T Consensus 23 LRTGWyt~V~tiels~i 39 (84)
T 3rrr_A 23 LRTGWYTSVITIELSNI 39 (84)
T ss_dssp EEEEEEEEEEEEECCCB
T ss_pred HHhcceeeEEEEEeccc
Confidence 48999999999876543
Done!