Query 035729
Match_columns 208
No_of_seqs 143 out of 1306
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 09:31:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035729.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035729hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wim_A KIAA0161 protein; ring 99.8 4E-19 1.4E-23 118.6 4.3 88 21-109 3-92 (94)
2 2ct7_A Ring finger protein 31; 99.4 2.4E-15 8.2E-20 98.1 -4.6 73 91-169 3-79 (86)
3 2jmo_A Parkin; IBR, E3 ligase, 99.4 7.1E-15 2.4E-19 94.4 -3.2 70 89-163 2-76 (80)
4 4ap4_A E3 ubiquitin ligase RNF 99.2 5.1E-13 1.7E-17 94.2 -0.5 119 21-196 5-126 (133)
5 3hcs_A TNF receptor-associated 99.2 4.1E-12 1.4E-16 93.4 2.8 135 18-197 13-151 (170)
6 1wd2_A Ariadne-1 protein homol 99.1 2.2E-11 7.6E-16 73.3 1.4 25 181-205 4-28 (60)
7 2ct2_A Tripartite motif protei 99.0 6.5E-10 2.2E-14 72.5 6.4 65 19-90 11-75 (88)
8 2ysl_A Tripartite motif-contai 99.0 4.7E-10 1.6E-14 70.6 4.4 59 18-87 15-73 (73)
9 2ecv_A Tripartite motif-contai 99.0 1.5E-09 5.1E-14 70.2 6.4 61 19-87 15-75 (85)
10 2djb_A Polycomb group ring fin 98.9 1.5E-09 5.1E-14 68.1 5.9 60 19-91 11-70 (72)
11 2ecy_A TNF receptor-associated 98.9 1.1E-09 3.9E-14 67.4 4.8 54 20-86 12-65 (66)
12 1g25_A CDK-activating kinase a 98.9 4.4E-10 1.5E-14 69.1 2.8 60 22-90 2-62 (65)
13 1rmd_A RAG1; V(D)J recombinati 98.9 9.6E-10 3.3E-14 75.6 4.8 83 22-128 22-104 (116)
14 2ecw_A Tripartite motif-contai 98.9 1.8E-09 6.1E-14 69.8 5.8 60 20-87 16-75 (85)
15 1jm7_A BRCA1, breast cancer ty 98.9 1.8E-09 6.1E-14 73.7 6.0 71 22-103 20-91 (112)
16 2ecm_A Ring finger and CHY zin 98.9 1E-09 3.5E-14 65.0 3.2 52 21-82 3-54 (55)
17 2egp_A Tripartite motif-contai 98.9 2.9E-10 9.8E-15 72.7 0.4 61 20-87 9-69 (79)
18 3ng2_A RNF4, snurf, ring finge 98.9 1.4E-09 4.7E-14 68.0 3.5 60 20-89 7-69 (71)
19 1t1h_A Gspef-atpub14, armadill 98.8 3.6E-09 1.2E-13 67.4 5.2 67 21-100 6-73 (78)
20 2ysj_A Tripartite motif-contai 98.8 4E-09 1.4E-13 64.3 5.1 48 18-74 15-62 (63)
21 1e4u_A Transcriptional repress 98.8 4.9E-09 1.7E-13 66.7 4.9 57 21-86 9-65 (78)
22 3ztg_A E3 ubiquitin-protein li 98.8 3.6E-09 1.2E-13 69.6 4.3 51 19-81 9-60 (92)
23 3hct_A TNF receptor-associated 98.8 8.5E-09 2.9E-13 71.0 5.9 87 18-129 13-99 (118)
24 2xeu_A Ring finger protein 4; 98.8 2.3E-09 8E-14 65.4 2.6 58 22-89 2-62 (64)
25 2ect_A Ring finger protein 126 98.8 4.6E-09 1.6E-13 66.8 3.8 59 19-88 11-69 (78)
26 2kiz_A E3 ubiquitin-protein li 98.8 8.4E-09 2.9E-13 64.0 4.8 54 19-83 10-63 (69)
27 2csy_A Zinc finger protein 183 98.8 7.7E-09 2.6E-13 66.3 4.7 50 19-82 11-60 (81)
28 2ea6_A Ring finger protein 4; 98.8 6.3E-09 2.2E-13 64.5 4.2 55 19-83 11-68 (69)
29 3lrq_A E3 ubiquitin-protein li 98.8 1.1E-08 3.6E-13 68.4 5.2 56 21-89 20-76 (100)
30 2yur_A Retinoblastoma-binding 98.7 8.5E-09 2.9E-13 65.0 4.4 51 19-81 11-62 (74)
31 2d8t_A Dactylidin, ring finger 98.7 2.2E-09 7.4E-14 67.2 0.9 56 19-88 11-66 (71)
32 2ecj_A Tripartite motif-contai 98.7 9.3E-09 3.2E-13 61.5 3.5 47 19-74 11-57 (58)
33 3knv_A TNF receptor-associated 98.7 8.6E-10 2.9E-14 78.4 -1.6 88 19-128 27-120 (141)
34 2ep4_A Ring finger protein 24; 98.7 1.2E-08 4.1E-13 64.2 3.7 52 20-82 12-63 (74)
35 1x4j_A Ring finger protein 38; 98.7 8.2E-09 2.8E-13 65.2 2.7 53 20-83 20-72 (75)
36 1wgm_A Ubiquitin conjugation f 98.6 3.1E-08 1.1E-12 65.8 4.8 56 17-86 16-72 (98)
37 2kr4_A Ubiquitin conjugation f 98.6 6.3E-08 2.2E-12 62.6 5.8 54 20-87 11-64 (85)
38 2y43_A E3 ubiquitin-protein li 98.6 2.5E-08 8.7E-13 66.4 3.7 68 21-101 20-88 (99)
39 3fl2_A E3 ubiquitin-protein li 98.6 2.3E-08 8E-13 69.4 3.2 49 22-83 51-99 (124)
40 1iym_A EL5; ring-H2 finger, ub 98.6 2.3E-08 7.8E-13 59.1 2.2 50 22-82 4-54 (55)
41 1bor_A Transcription factor PM 98.6 9.2E-09 3.1E-13 61.2 0.5 47 20-83 3-49 (56)
42 2yu4_A E3 SUMO-protein ligase 98.5 7.6E-08 2.6E-12 63.5 4.5 61 21-87 5-67 (94)
43 1v87_A Deltex protein 2; ring- 98.5 2.5E-08 8.5E-13 68.2 2.2 57 22-83 24-94 (114)
44 2ecn_A Ring finger protein 141 98.5 9.9E-09 3.4E-13 63.9 0.0 54 19-87 11-64 (70)
45 1z6u_A NP95-like ring finger p 98.5 1E-07 3.6E-12 68.3 4.8 50 22-84 77-126 (150)
46 2l0b_A E3 ubiquitin-protein li 98.5 4.9E-08 1.7E-12 64.0 2.8 52 21-83 38-89 (91)
47 1chc_A Equine herpes virus-1 r 98.5 1.4E-08 4.9E-13 62.7 0.2 48 22-82 4-51 (68)
48 4ayc_A E3 ubiquitin-protein li 98.4 5.7E-08 1.9E-12 68.7 2.1 48 23-84 53-100 (138)
49 1jm7_B BARD1, BRCA1-associated 98.4 4E-08 1.4E-12 67.5 1.1 51 21-87 20-71 (117)
50 3l11_A E3 ubiquitin-protein li 98.4 3.5E-08 1.2E-12 67.5 0.6 50 21-83 13-62 (115)
51 2kre_A Ubiquitin conjugation f 98.4 1.2E-07 4.2E-12 63.2 2.9 53 20-86 26-78 (100)
52 2ckl_A Polycomb group ring fin 98.4 4.8E-08 1.6E-12 66.1 0.7 51 21-84 13-63 (108)
53 3htk_C E3 SUMO-protein ligase 98.4 2.7E-07 9.2E-12 71.2 4.6 62 17-87 175-236 (267)
54 2ecg_A Baculoviral IAP repeat- 98.2 1.5E-07 5E-12 59.4 0.2 45 21-83 23-68 (75)
55 2ckl_B Ubiquitin ligase protei 98.2 5.9E-07 2E-11 65.3 3.1 50 22-83 53-102 (165)
56 4ap4_A E3 ubiquitin ligase RNF 98.2 4.2E-07 1.4E-11 63.4 2.2 61 18-88 67-130 (133)
57 2ecl_A Ring-box protein 2; RNF 98.2 3.5E-07 1.2E-11 58.5 1.0 57 20-86 12-79 (81)
58 4ic3_A E3 ubiquitin-protein li 98.2 6.8E-08 2.3E-12 60.8 -2.7 45 21-83 22-67 (74)
59 2d8s_A Cellular modulator of i 98.1 2.5E-06 8.4E-11 54.3 3.8 56 19-84 11-71 (80)
60 2ea5_A Cell growth regulator w 98.0 3E-06 1E-10 52.2 3.0 48 18-83 10-58 (68)
61 2c2l_A CHIP, carboxy terminus 98.0 4E-06 1.4E-10 65.8 4.2 54 20-86 205-258 (281)
62 3dpl_R Ring-box protein 1; ubi 98.0 4.2E-06 1.4E-10 56.2 3.4 55 21-85 35-103 (106)
63 2f42_A STIP1 homology and U-bo 98.0 7.8E-06 2.7E-10 59.9 4.8 54 20-86 103-156 (179)
64 2y1n_A E3 ubiquitin-protein li 97.9 6.7E-06 2.3E-10 67.2 3.6 52 22-86 331-382 (389)
65 2vje_A E3 ubiquitin-protein li 97.9 3.4E-06 1.2E-10 51.3 1.0 49 22-82 7-56 (64)
66 2yho_A E3 ubiquitin-protein li 97.9 3.9E-07 1.3E-11 58.0 -3.4 44 22-83 17-61 (79)
67 2vje_B MDM4 protein; proto-onc 97.8 3.1E-06 1E-10 51.3 0.6 50 21-82 5-55 (63)
68 4a0k_B E3 ubiquitin-protein li 97.7 5.7E-06 1.9E-10 56.5 0.5 54 21-84 46-113 (117)
69 2ct0_A Non-SMC element 1 homol 97.6 2.6E-05 8.8E-10 48.6 2.4 54 19-83 11-64 (74)
70 3k1l_B Fancl; UBC, ring, RWD, 97.5 5.8E-05 2E-09 60.4 3.8 63 19-83 304-373 (381)
71 3t6p_A Baculoviral IAP repeat- 97.0 6.5E-05 2.2E-09 60.8 -1.1 44 22-83 294-338 (345)
72 2bay_A PRE-mRNA splicing facto 97.0 0.0004 1.4E-08 41.5 2.4 53 23-89 3-56 (61)
73 1wd2_A Ariadne-1 protein homol 96.5 0.0013 4.5E-08 39.1 2.3 39 110-154 4-44 (60)
74 1vyx_A ORF K3, K3RING; zinc-bi 96.5 0.0036 1.2E-07 37.1 4.0 50 21-82 4-58 (60)
75 3vk6_A E3 ubiquitin-protein li 95.5 0.0048 1.7E-07 40.2 1.5 46 25-82 3-48 (101)
76 2cs3_A Protein C14ORF4, MY039 94.8 0.023 7.7E-07 35.2 2.8 48 20-74 12-63 (93)
77 2jun_A Midline-1; B-BOX, TRIM, 94.3 0.018 6.3E-07 37.6 1.8 27 134-160 69-96 (101)
78 2ko5_A Ring finger protein Z; 93.3 0.022 7.4E-07 36.5 0.7 67 1-83 1-73 (99)
79 3nw0_A Non-structural maintena 92.0 0.066 2.3E-06 40.9 2.0 53 21-84 178-230 (238)
80 3qt1_I DNA-directed RNA polyme 88.5 0.23 7.9E-06 34.3 2.1 37 108-146 20-56 (133)
81 3j20_Y 30S ribosomal protein S 81.1 0.46 1.6E-05 26.7 0.7 30 111-146 18-47 (50)
82 1z2q_A LM5-1; membrane protein 80.9 0.94 3.2E-05 28.4 2.2 38 19-56 17-54 (84)
83 3h0g_I DNA-directed RNA polyme 76.4 1 3.5E-05 30.0 1.5 33 112-146 4-36 (113)
84 1z60_A TFIIH basal transcripti 74.1 0.68 2.3E-05 27.0 0.1 39 113-160 16-55 (59)
85 1twf_I B12.6, DNA-directed RNA 73.0 1.1 3.8E-05 30.3 1.0 34 111-146 3-36 (122)
86 1weo_A Cellulose synthase, cat 72.0 12 0.00041 23.6 5.4 52 22-82 15-69 (93)
87 3u5c_f 40S ribosomal protein S 71.7 1.3 4.4E-05 31.2 1.1 33 112-148 118-150 (152)
88 1fre_A Nuclear factor XNF7; zi 71.5 3.1 0.00011 21.8 2.4 26 134-159 12-38 (42)
89 2k4x_A 30S ribosomal protein S 69.9 1.6 5.5E-05 25.0 1.0 29 112-146 18-46 (55)
90 1weo_A Cellulose synthase, cat 67.0 5.3 0.00018 25.2 3.0 59 112-199 16-74 (93)
91 3fyb_A Protein of unknown func 66.7 2.4 8.3E-05 27.2 1.5 17 48-64 41-57 (104)
92 2o35_A Hypothetical protein DU 66.6 2.5 8.4E-05 27.3 1.5 17 48-64 42-58 (105)
93 3t7l_A Zinc finger FYVE domain 64.5 2.5 8.6E-05 26.8 1.2 36 21-56 18-53 (90)
94 2yvr_A Transcription intermedi 62.8 1.5 5.2E-05 24.2 -0.0 27 134-160 16-42 (50)
95 1pft_A TFIIB, PFTFIIBN; N-term 62.0 3.2 0.00011 23.0 1.2 29 112-146 5-34 (50)
96 2d8v_A Zinc finger FYVE domain 61.2 2.2 7.6E-05 25.3 0.5 35 20-59 5-40 (67)
97 2yw8_A RUN and FYVE domain-con 60.5 4.8 0.00016 24.9 2.0 40 106-153 13-52 (82)
98 1joc_A EEA1, early endosomal a 60.3 6.8 0.00023 26.4 2.9 40 106-153 63-102 (125)
99 1x4u_A Zinc finger, FYVE domai 56.4 5.6 0.00019 24.7 1.8 39 106-152 8-46 (84)
100 1joc_A EEA1, early endosomal a 54.5 2.8 9.5E-05 28.4 0.1 35 22-56 68-102 (125)
101 2hu9_A MERP, mercuric transpor 54.4 1.5 5.3E-05 29.9 -1.2 44 70-125 2-48 (130)
102 1gh9_A 8.3 kDa protein (gene M 53.9 2.6 9E-05 25.5 -0.1 27 112-146 4-30 (71)
103 1vfy_A Phosphatidylinositol-3- 53.8 3.3 0.00011 25.1 0.4 32 24-55 12-43 (73)
104 3ddt_A E3 ubiquitin-protein li 52.7 2.9 9.8E-05 22.8 -0.0 26 134-159 16-42 (48)
105 1y02_A CARP2, FYVE-ring finger 52.3 3.4 0.00012 27.8 0.3 38 21-58 17-54 (120)
106 1vq8_Z 50S ribosomal protein L 51.5 4.7 0.00016 25.2 0.8 31 112-148 27-57 (83)
107 4esj_A Type-2 restriction enzy 51.4 8 0.00027 29.2 2.2 57 89-149 7-69 (257)
108 2did_A Tripartite motif protei 50.4 3.8 0.00013 22.8 0.3 27 134-160 17-44 (53)
109 3mjh_B Early endosome antigen 50.1 3.4 0.00012 21.1 0.0 16 22-37 4-19 (34)
110 2xzm_6 RPS27E; ribosome, trans 49.8 5.2 0.00018 24.8 0.8 32 113-149 33-64 (81)
111 3iz6_X 40S ribosomal protein S 48.9 6.4 0.00022 24.6 1.1 37 113-154 37-73 (86)
112 1wfk_A Zinc finger, FYVE domai 47.9 4.9 0.00017 25.3 0.5 34 22-55 8-41 (88)
113 2csv_A Tripartite motif protei 46.6 3.8 0.00013 24.5 -0.2 28 134-161 27-54 (72)
114 2yrg_A Tripartite motif-contai 46.5 5.1 0.00018 23.0 0.4 27 134-160 23-50 (59)
115 2jr6_A UPF0434 protein NMA0874 46.3 14 0.00049 22.0 2.4 24 182-205 7-30 (68)
116 1lv3_A Hypothetical protein YA 46.0 5.3 0.00018 23.9 0.4 15 181-195 7-21 (68)
117 3u5c_b RP61, YS20, 40S ribosom 45.0 5 0.00017 24.9 0.2 32 113-149 35-66 (82)
118 3a1b_A DNA (cytosine-5)-methyl 44.9 11 0.00038 26.6 2.0 40 18-60 74-114 (159)
119 2d8u_A Ubiquitin ligase TRIM63 44.9 5.7 0.0002 22.9 0.5 28 134-161 18-46 (64)
120 2dja_A Midline-2; tripartite m 44.9 4.8 0.00016 24.8 0.1 28 134-161 28-56 (84)
121 2bl6_A Nucleocapsid protein P1 42.4 19 0.00064 18.3 2.2 16 146-161 2-17 (37)
122 2kdx_A HYPA, hydrogenase/ureas 42.0 31 0.0011 22.7 3.8 47 91-145 42-99 (119)
123 2jne_A Hypothetical protein YF 41.4 15 0.00052 23.5 2.0 22 182-205 31-52 (101)
124 1wep_A PHF8; structural genomi 41.0 41 0.0014 20.3 4.0 63 20-88 9-71 (79)
125 1zbd_B Rabphilin-3A; G protein 39.7 6.4 0.00022 26.9 0.1 33 21-53 53-86 (134)
126 1x4v_A Hypothetical protein LO 39.0 12 0.0004 22.0 1.2 40 112-162 12-51 (63)
127 2js4_A UPF0434 protein BB2007; 38.9 9.9 0.00034 22.8 0.9 30 111-146 7-36 (70)
128 1qxf_A GR2, 30S ribosomal prot 38.1 9.8 0.00033 22.5 0.7 32 112-148 7-38 (66)
129 2apo_B Ribosome biogenesis pro 37.8 26 0.0009 20.3 2.5 36 70-107 19-54 (60)
130 2i5o_A DNA polymerase ETA; zin 37.8 14 0.00049 19.3 1.3 15 181-195 7-21 (39)
131 2pk7_A Uncharacterized protein 37.0 10 0.00034 22.7 0.6 29 112-146 8-36 (69)
132 2hf1_A Tetraacyldisaccharide-1 36.6 9 0.00031 22.9 0.4 29 112-146 8-36 (68)
133 2jyp_A Aragonite protein AP7; 36.1 18 0.00063 17.7 1.4 19 19-37 5-23 (36)
134 3zyq_A Hepatocyte growth facto 36.0 18 0.00062 26.9 2.1 33 24-56 165-197 (226)
135 2akl_A PHNA-like protein PA012 35.9 12 0.0004 25.4 0.9 30 110-146 25-54 (138)
136 2vpb_A Hpygo1, pygopus homolog 35.6 18 0.00061 21.2 1.6 55 20-74 5-62 (65)
137 4g9i_A Hydrogenase maturation 35.5 33 0.0011 30.7 4.0 61 21-83 104-190 (772)
138 1wys_A Riken cDNA 2310008M20 p 35.4 15 0.00051 22.4 1.2 44 113-167 15-58 (75)
139 3v2d_5 50S ribosomal protein L 35.2 17 0.00058 21.0 1.4 28 107-145 25-52 (60)
140 4ayb_P DNA-directed RNA polyme 35.0 18 0.00063 19.8 1.4 28 119-148 8-35 (48)
141 2jny_A Uncharacterized BCR; st 34.7 13 0.00045 22.1 0.9 30 111-146 9-38 (67)
142 2zjr_Z 50S ribosomal protein L 33.3 22 0.00075 20.6 1.7 28 107-145 25-52 (60)
143 3j20_W 30S ribosomal protein S 33.2 13 0.00045 21.8 0.7 32 112-148 15-46 (63)
144 2ffw_A Midline-1; B-BOX, ring 33.0 47 0.0016 20.0 3.4 36 22-58 29-65 (78)
145 2lbm_A Transcriptional regulat 32.1 30 0.001 23.8 2.5 53 20-79 60-116 (142)
146 3nw0_A Non-structural maintena 32.1 28 0.00095 26.2 2.6 23 173-195 207-229 (238)
147 3m7n_A Putative uncharacterize 31.6 29 0.00098 24.8 2.5 22 184-207 141-162 (179)
148 2yww_A Aspartate carbamoyltran 31.6 12 0.00042 26.0 0.4 10 111-120 104-113 (149)
149 1dvp_A HRS, hepatocyte growth 31.5 9.3 0.00032 28.4 -0.2 33 24-56 162-194 (220)
150 2k2d_A Ring finger and CHY zin 30.1 13 0.00043 22.9 0.3 28 112-145 37-64 (79)
151 3vth_A Hydrogenase maturation 29.8 26 0.00088 31.3 2.3 60 21-82 109-194 (761)
152 2jrp_A Putative cytoplasmic pr 29.7 22 0.00075 22.0 1.3 15 184-198 3-17 (81)
153 1dsq_A Nucleic acid binding pr 29.7 28 0.00096 16.1 1.5 19 145-163 3-21 (26)
154 3na7_A HP0958; flagellar bioge 29.3 38 0.0013 25.6 3.0 26 172-197 211-236 (256)
155 3ql9_A Transcriptional regulat 29.2 57 0.002 22.0 3.5 35 20-58 54-88 (129)
156 1twf_L ABC10-alpha, DNA-direct 29.0 21 0.00073 21.3 1.2 27 112-145 28-54 (70)
157 2yrc_A Protein transport prote 28.5 24 0.00081 20.3 1.3 35 111-145 8-42 (59)
158 1x61_A Thyroid receptor intera 28.2 29 0.00099 20.1 1.7 36 21-59 31-66 (72)
159 2pv0_B DNA (cytosine-5)-methyl 28.1 32 0.0011 27.9 2.4 36 19-58 89-126 (386)
160 3a43_A HYPD, hydrogenase nicke 27.8 53 0.0018 22.4 3.2 37 90-128 39-84 (139)
161 2e72_A POGO transposable eleme 27.7 24 0.00081 19.4 1.1 13 182-194 11-23 (49)
162 3v43_A Histone acetyltransfera 27.4 71 0.0024 20.7 3.7 52 22-78 4-62 (112)
163 3h0g_L DNA-directed RNA polyme 27.1 29 0.00098 20.3 1.5 28 112-146 21-48 (63)
164 2a20_A Regulating synaptic mem 25.7 14 0.00049 21.3 -0.0 22 135-156 24-45 (62)
165 2zet_C Melanophilin; complex, 25.2 85 0.0029 21.8 3.9 35 111-152 67-101 (153)
166 2jx1_A Myelin transcription fa 25.1 28 0.00095 17.2 1.0 11 70-80 2-12 (31)
167 2ihx_A Nucleocapsid (NC) prote 24.8 51 0.0018 18.7 2.3 17 146-162 32-48 (61)
168 1zfo_A LAsp-1; LIM domain, zin 24.8 25 0.00086 17.1 0.8 10 184-193 4-13 (31)
169 1wfe_A Riken cDNA 2310008M20 p 24.8 26 0.00089 21.9 1.1 40 112-163 25-65 (86)
170 3nyb_B Protein AIR2; polya RNA 24.7 53 0.0018 20.2 2.5 20 144-163 5-24 (83)
171 1loi_A Cyclic 3',5'-AMP specif 24.6 20 0.00068 16.3 0.3 13 145-157 6-18 (26)
172 2cur_A Skeletal muscle LIM-pro 24.3 35 0.0012 19.6 1.6 35 21-58 29-63 (69)
173 2l3k_A Rhombotin-2, linker, LI 24.2 70 0.0024 20.9 3.3 40 21-62 34-73 (123)
174 2aus_D NOP10, ribosome biogene 24.2 49 0.0017 19.1 2.1 36 70-107 18-53 (60)
175 1wil_A KIAA1045 protein; ring 24.2 86 0.0029 19.5 3.3 34 22-57 14-47 (89)
176 2kpi_A Uncharacterized protein 24.0 56 0.0019 18.4 2.3 22 182-205 9-30 (56)
177 1a6b_B Momulv, zinc finger pro 24.0 36 0.0012 17.8 1.3 21 144-164 10-30 (40)
178 1zvf_A 3-hydroxyanthranilate 3 23.9 11 0.00039 26.9 -0.8 47 145-194 125-172 (176)
179 1dxg_A Desulforedoxin; non-hem 23.8 58 0.002 16.4 2.2 22 181-202 4-27 (36)
180 1pg5_B Aspartate carbamoyltran 23.7 24 0.00083 25.0 0.8 10 111-120 113-122 (168)
181 1l1o_C Replication protein A 7 22.6 23 0.00078 25.4 0.5 29 112-145 43-71 (181)
182 3vhs_A ATPase wrnip1; zinc fin 22.6 3.4 0.00012 19.4 -2.5 18 68-87 5-22 (29)
183 2gmg_A Hypothetical protein PF 22.4 34 0.0012 22.3 1.2 14 79-92 23-36 (105)
184 1x6a_A LIMK-2, LIM domain kina 22.4 51 0.0018 19.5 2.1 38 21-59 39-76 (81)
185 1yfu_A 3-hydroxyanthranilate-3 22.1 13 0.00044 26.6 -0.9 48 144-194 122-170 (174)
186 2d8z_A Four and A half LIM dom 21.7 35 0.0012 19.6 1.2 35 21-58 29-63 (70)
187 1ee8_A MUTM (FPG) protein; bet 21.7 47 0.0016 25.4 2.2 23 183-205 235-259 (266)
188 3mpx_A FYVE, rhogef and PH dom 21.6 19 0.00067 29.3 0.0 39 21-59 373-411 (434)
189 2dar_A PDZ and LIM domain prot 21.6 35 0.0012 20.9 1.3 32 24-58 52-83 (90)
190 2d8x_A Protein pinch; LIM doma 21.6 31 0.001 19.9 0.9 36 21-59 29-64 (70)
191 2kvh_A Zinc finger and BTB dom 21.3 29 0.00099 14.9 0.6 10 137-146 4-13 (27)
192 2cs8_A KIAA0535 protein; ST18, 21.1 1.1E+02 0.0038 19.9 3.5 12 68-79 8-19 (108)
193 1wig_A KIAA1808 protein; LIM d 21.1 16 0.00054 21.6 -0.5 35 21-57 29-63 (73)
194 3u6p_A Formamidopyrimidine-DNA 20.7 41 0.0014 25.8 1.6 22 184-205 246-269 (273)
195 2xzf_A Formamidopyrimidine-DNA 20.3 42 0.0014 25.7 1.6 22 184-205 243-266 (271)
196 1znf_A 31ST zinc finger from X 20.3 32 0.0011 14.6 0.6 9 138-146 3-11 (27)
197 2lcq_A Putative toxin VAPC6; P 20.2 43 0.0015 23.3 1.6 14 183-196 148-161 (165)
198 3ttc_A HYPF, transcriptional r 20.0 37 0.0013 29.7 1.4 60 20-81 14-99 (657)
No 1
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.76 E-value=4e-19 Score=118.56 Aligned_cols=88 Identities=19% Similarity=0.519 Sum_probs=76.7
Q ss_pred CCccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCC--CCcccccCCCChhHHHHH
Q 035729 21 GSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKN--LDPFSCKPMIPSSLFSKW 98 (208)
Q Consensus 21 ~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~--l~~~~i~~~l~~~~~~~~ 98 (208)
.+.++|+||++++..++.+ .+.+|+|.||.+||++|+..++.++...++.||.++|+.. ++++.++.+++++++++|
T Consensus 3 ~~~~~C~IC~~~~~~~~~~-~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~ll~~~~~~ky 81 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMT-TIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAEIMQRY 81 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEE-EETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHHSCHHHHHHH
T ss_pred CCCcCCcccCcccccccce-EcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHHCCHHHHHHH
Confidence 4578999999999766433 3458999999999999999999886667899999999999 999999999999999999
Q ss_pred HHHHHhhhhcC
Q 035729 99 CDLLCEDYVRG 109 (208)
Q Consensus 99 ~~~~~~~~~~~ 109 (208)
.+++.+.+++.
T Consensus 82 ~~~~~~~~v~~ 92 (94)
T 1wim_A 82 KKLQFERSGPS 92 (94)
T ss_dssp HHHHHHSSCSS
T ss_pred HHHHHHhhhcc
Confidence 99999887753
No 2
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=99.40 E-value=2.4e-15 Score=98.12 Aligned_cols=73 Identities=30% Similarity=0.595 Sum_probs=62.0
Q ss_pred ChhHHHHHHHHHHhhhhc-CCCcccCcccccccchhcchhhcCCCCcccCccccchhccccCcCc---CCCCCChhhhcc
Q 035729 91 PSSLFSKWCDLLCEDYVR-GYERSYCPNRNCMALVVNECERKGRMKKAQCPNCKHWFCFRCKLKW---HGGYHCEESGNL 166 (208)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~-~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~---H~~~~C~~~~~~ 166 (208)
+++++++|.+++.+.+|. +++++||| +|++.++.+.. ...+.|+.|+..||+.|+.+| |.+.+|.++++|
T Consensus 3 s~~~~e~y~~~l~e~~v~~~~~~~wCP--~C~~~~~~~~~----~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~w 76 (86)
T 2ct7_A 3 SGSSGALFHKKLTEGVLMRDPKFLWCA--QCSFGFIYERE----QLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNW 76 (86)
T ss_dssp CCCCCCSSSSCCCCSCCCSCCCEECCS--SSCCCEECCCS----CSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEeECc--CCCchheecCC----CCceEeCCCCCccccccCCchhhcCCCCChHHHHHH
Confidence 345678888888888886 67788999 89998876643 567999999999999999999 999999999988
Q ss_pred ccc
Q 035729 167 RDR 169 (208)
Q Consensus 167 ~~~ 169 (208)
..+
T Consensus 77 ~~~ 79 (86)
T 2ct7_A 77 KRM 79 (86)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 3
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=99.38 E-value=7.1e-15 Score=94.42 Aligned_cols=70 Identities=23% Similarity=0.507 Sum_probs=61.6
Q ss_pred CCChhHHHHHHHHHHhhhhcCCCcccCcccccccchhcchhhcCCCCcccCc-----cccchhccccCcCcCCCCCChhh
Q 035729 89 MIPSSLFSKWCDLLCEDYVRGYERSYCPNRNCMALVVNECERKGRMKKAQCP-----NCKHWFCFRCKLKWHGGYHCEES 163 (208)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~-----~C~~~~C~~C~~~~H~~~~C~~~ 163 (208)
+|+++++++|++++.+.++...+.+|||.|+|+..+..++. ...+.|+ .|++.||+.|+.+||. .+|...
T Consensus 2 ~l~~~~~~rY~~~~~e~~v~~~~~~~CP~p~C~~~v~~~~~----~~~v~C~~~~~~~C~~~FC~~C~~~wH~-~~C~~~ 76 (80)
T 2jmo_A 2 HMGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPD----QRKVTCEGGNGLGCGFAFCRECKEAYHE-GECSAV 76 (80)
T ss_dssp CCCCCCCCSCCCSSSCCSSCCCSSCCCCSSSCCCCCCCCSC----TTSBCTTSSSTTCCSCCEETTTTEECCS-SCSSSC
T ss_pred CCCHHHHHHHHHHHHHHHhhhCCcEECCCCCCCcccEECCC----CCcCCCCCCCCCCCCCeeccccCccccC-Cccccc
Confidence 57788899999999999988556999999999999987653 5779998 9999999999999999 999764
No 4
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.24 E-value=5.1e-13 Score=94.15 Aligned_cols=119 Identities=23% Similarity=0.575 Sum_probs=82.4
Q ss_pred CCcccccccccccccc---ccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCcccccCCCChhHHHH
Q 035729 21 GSSFTCEICIEPMAAN---KKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDPFSCKPMIPSSLFSK 97 (208)
Q Consensus 21 ~~~~~C~iC~~~~~~~---~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~~l~~~~~~~ 97 (208)
.+.++|+||++.+..+ ....+.++|||.||.+||.+|+.. ...||. |+..+....+..+.-
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~l~~l~i------ 68 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKINHKRYHPIYI------ 68 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT--------CSBCTT--TCCBCTTTCEEECBC------
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh--------CCCCCC--CCCcCcccccccccc------
Confidence 4568999999998654 122257899999999999999853 238999 999887766654311
Q ss_pred HHHHHHhhhhcCCCcccCcccccccchhcchhhcCCCCcccCccccchhccccCcCcCCCCCChhhhcccccchHHHHHH
Q 035729 98 WCDLLCEDYVRGYERSYCPNRNCMALVVNECERKGRMKKAQCPNCKHWFCFRCKLKWHGGYHCEESGNLRDRNDIAFGQL 177 (208)
Q Consensus 98 ~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~ 177 (208)
..+...|+ -|...+...... ........|+..||..|...|.
T Consensus 69 -----------~~~~~~C~--iC~~~~~~~~~~---~~~~~~~~CgH~fc~~Ci~~~~---------------------- 110 (133)
T 4ap4_A 69 -----------GSGTVSCP--ICMDGYSEIVQN---GRLIVSTECGHVFCSQCLRDSL---------------------- 110 (133)
T ss_dssp -----------SSSSCBCT--TTCCBHHHHHHT---TCCEEEETTSBEEEHHHHHHHH----------------------
T ss_pred -----------CCCCCCCC--CCCCcccccccc---CcceEeCCCCChhhHHHHHHHH----------------------
Confidence 23456688 687665432211 1223344799999999976553
Q ss_pred HHhCCcccCCCCCceeEec
Q 035729 178 AERMKWARCPGCGHCVQRK 196 (208)
Q Consensus 178 ~~~~~~k~CP~C~~~i~k~ 196 (208)
. ..+.||.|+..|.++
T Consensus 111 -~--~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 111 -K--NANTCPTCRKKINHK 126 (133)
T ss_dssp -H--HCSBCTTTCCBCCGG
T ss_pred -H--cCCCCCCCCCcCChh
Confidence 1 136899999998865
No 5
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.21 E-value=4.1e-12 Score=93.44 Aligned_cols=135 Identities=21% Similarity=0.416 Sum_probs=85.1
Q ss_pred ccCCCccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCcccccCCCChhHHHH
Q 035729 18 EGNGSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDPFSCKPMIPSSLFSK 97 (208)
Q Consensus 18 ~~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~~l~~~~~~~ 97 (208)
....+.+.|+||++.+..+ +.++|||.||..||.+|+.... ..||. |+..+...++. ....+++
T Consensus 13 ~~~~~~~~C~IC~~~~~~p----v~~~CgH~fC~~Ci~~~~~~~~-------~~CP~--Cr~~~~~~~~~---~~~~~~~ 76 (170)
T 3hcs_A 13 PPLESKYECPICLMALREA----VQTPCGHRFCKACIIKSIRDAG-------HKCPV--DNEILLENQLF---PDNFAKR 76 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHHC-------SBCTT--TCCBCCGGGCE---ECHHHHH
T ss_pred cCCCCCCCCCCCChhhcCc----EECCCCCHHHHHHHHHHHHhCC-------CCCCC--CccCcchhhhh---hhHHHHH
Confidence 3445678999999999765 3679999999999999997532 38999 99888775543 2222222
Q ss_pred HHHHHHhhhhcCCCcccCcccccccchhcchhhcC----CCCcccCccccchhccccCcCcCCCCCChhhhcccccchHH
Q 035729 98 WCDLLCEDYVRGYERSYCPNRNCMALVVNECERKG----RMKKAQCPNCKHWFCFRCKLKWHGGYHCEESGNLRDRNDIA 173 (208)
Q Consensus 98 ~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~----~~~~~~C~~C~~~~C~~C~~~~H~~~~C~~~~~~~~~~~~~ 173 (208)
. .. .-.++||+.+|+..+........ .-..+.|+.|+..+ .+....+|....|.
T Consensus 77 ~----i~-----~l~v~C~n~GC~~~~~~~~l~~H~~~C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~------------ 134 (170)
T 3hcs_A 77 E----IL-----SLMVKCPNEGCLHKMELRHLEDHQAHCEFALMDCPQCQRPF-QKFHINIHILKDCP------------ 134 (170)
T ss_dssp H----HH-----TSEEECCSTTCCCEEEGGGHHHHHTTCTTSEEECTTTCCEE-EGGGHHHHHHHTCT------------
T ss_pred H----Hh-----hcccCCCCCCCCceecHhHHHHHHhcCCceeeECCCCChHH-HHHHHHHHhhhhCC------------
Confidence 1 11 23678999999987765543211 12344555444444 22222334333332
Q ss_pred HHHHHHhCCcccCCCCCceeEecC
Q 035729 174 FGQLAERMKWARCPGCGHCVQRKN 197 (208)
Q Consensus 174 ~~~~~~~~~~k~CP~C~~~i~k~~ 197 (208)
.....||.|+..+.+.+
T Consensus 135 -------~r~~~C~~C~~~~~~~~ 151 (170)
T 3hcs_A 135 -------RRQVSCDNCAASMAFED 151 (170)
T ss_dssp -------TCEEECTTTCCEEEGGG
T ss_pred -------CCCeECCCCCCccCHHH
Confidence 35677999999887653
No 6
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.08 E-value=2.2e-11 Score=73.28 Aligned_cols=25 Identities=24% Similarity=0.631 Sum_probs=23.9
Q ss_pred CCcccCCCCCceeEecCCCCceEeC
Q 035729 181 MKWARCPGCGHCVQRKNGCHVMQDS 205 (208)
Q Consensus 181 ~~~k~CP~C~~~i~k~~GCnhm~C~ 205 (208)
.++|+||+|+++|||++|||||+|.
T Consensus 4 ~~~k~CP~C~~~Iek~~GCnhmtC~ 28 (60)
T 1wd2_A 4 ANTKECPKCHVTIEKDGGCNHMVCR 28 (60)
T ss_dssp CCCCCCTTTCCCCSSCCSCCSSSCC
T ss_pred ccceECcCCCCeeEeCCCCCcEEEC
Confidence 5789999999999999999999998
No 7
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=6.5e-10 Score=72.49 Aligned_cols=65 Identities=22% Similarity=0.498 Sum_probs=49.9
Q ss_pred cCCCccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCcccccCCC
Q 035729 19 GNGSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDPFSCKPMI 90 (208)
Q Consensus 19 ~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~~l 90 (208)
...+.++|+||++.+...+...+.++|+|.||..|+.+|+... ...+.||. |+..+...++..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-----~~~~~CP~--Cr~~~~~~~i~~l~ 75 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS-----INGVRCPF--CSKITRITSLTQLT 75 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC-----SSCBCCTT--TCCCBCCSSTTTSE
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC-----CCCcCCCC--CCCcccchhHHHHH
Confidence 3445689999999997643323578999999999999999764 23579999 99988877665543
No 8
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=4.7e-10 Score=70.56 Aligned_cols=59 Identities=20% Similarity=0.533 Sum_probs=45.9
Q ss_pred ccCCCccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCccccc
Q 035729 18 EGNGSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDPFSCK 87 (208)
Q Consensus 18 ~~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~ 87 (208)
+.....+.|+||++.+..+ +.++|+|.||..|+..|+.. ......||. |+..+..++++
T Consensus 15 ~~~~~~~~C~IC~~~~~~~----~~~~CgH~fC~~Ci~~~~~~-----~~~~~~CP~--Cr~~~~~~~~r 73 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKP----VTIDCGHNFCLKCITQIGET-----SCGFFKCPL--CKTSVRKNAIR 73 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSE----EECTTCCEEEHHHHHHHCSS-----SCSCCCCSS--SCCCCCCCCCC
T ss_pred HhCccCCEeccCCcccCCe----EEcCCCChhhHHHHHHHHHc-----CCCCCCCCC--CCCcCCcccCC
Confidence 3345578999999999654 35699999999999999852 234579999 99988876653
No 9
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=1.5e-09 Score=70.18 Aligned_cols=61 Identities=26% Similarity=0.602 Sum_probs=48.4
Q ss_pred cCCCccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCccccc
Q 035729 19 GNGSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDPFSCK 87 (208)
Q Consensus 19 ~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~ 87 (208)
...+.++|+||++.+..+ +.++|+|.||..|+..|+..+... ...+.||. |+..+...++.
T Consensus 15 ~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~--~~~~~CP~--Cr~~~~~~~~~ 75 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQP----LSLDCGHSFCQACLTANHKKSMLD--KGESSCPV--CRISYQPENIR 75 (85)
T ss_dssp CCCCCCCCTTTCSCCSSC----BCCSSSCCBCTTHHHHHHHHHHHT--TSCCCCTT--TCCSSCSSSCC
T ss_pred HccCCCCCCCCCcccCCc----eeCCCCCHHHHHHHHHHHHHhhcC--CCCCcCCC--CCCccCHHhcC
Confidence 334568999999999654 367999999999999999886654 23579999 99988776554
No 10
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=1.5e-09 Score=68.13 Aligned_cols=60 Identities=20% Similarity=0.423 Sum_probs=46.9
Q ss_pred cCCCccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCcccccCCCC
Q 035729 19 GNGSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDPFSCKPMIP 91 (208)
Q Consensus 19 ~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~~l~ 91 (208)
.....+.|+||++.+..+ +.+.+|+|.||..|+..|+.. ...||. |+..+...++...+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~~~~~~~ 70 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYY--------SNRCPK--CNIVVHQTQPLSGPS 70 (72)
T ss_dssp CCCGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHH--------CSSCTT--TCCCCCSSCSCCCCS
T ss_pred hcCCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHc--------CCcCCC--cCcccCcccccccCC
Confidence 345578999999999654 124599999999999999965 258999 999988877665543
No 11
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=1.1e-09 Score=67.43 Aligned_cols=54 Identities=22% Similarity=0.639 Sum_probs=43.4
Q ss_pred CCCccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCcccc
Q 035729 20 NGSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDPFSC 86 (208)
Q Consensus 20 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i 86 (208)
..+.+.|+||++.+..+ +.++|+|.||..|+.+|+. .....||. |+..+..+++
T Consensus 12 ~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~-------~~~~~CP~--Cr~~~~~~~i 65 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSP----KQTECGHRFCESCMAALLS-------SSSPKCTA--CQESIVKDKV 65 (66)
T ss_dssp CCCCEECTTTCCEESSC----CCCSSSCCCCHHHHHHHHT-------TSSCCCTT--TCCCCCTTTC
T ss_pred CCcCCCCCCCChHhcCe----eECCCCCHHHHHHHHHHHH-------hCcCCCCC--CCcCCChhhc
Confidence 35578999999999655 3579999999999999985 12468999 9998877654
No 12
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.92 E-value=4.4e-10 Score=69.12 Aligned_cols=60 Identities=18% Similarity=0.424 Sum_probs=45.5
Q ss_pred Cccccccccc-cccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCcccccCCC
Q 035729 22 SSFTCEICIE-PMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDPFSCKPMI 90 (208)
Q Consensus 22 ~~~~C~iC~~-~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~~l 90 (208)
+..+|+||++ .+..+....+.++|||.||..|+.+++.. ....||. |+..+...+++..+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~~~~~~~~ 62 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-------GAGNCPE--CGTPLRKSNFRVQL 62 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT-------TSSSCTT--TCCCCSSCCCEEEC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc-------CCCcCCC--CCCccccccceeec
Confidence 3578999999 66555332246799999999999999753 1368999 99999887776543
No 13
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.92 E-value=9.6e-10 Score=75.58 Aligned_cols=83 Identities=29% Similarity=0.574 Sum_probs=59.7
Q ss_pred CccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCcccccCCCChhHHHHHHHH
Q 035729 22 SSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDPFSCKPMIPSSLFSKWCDL 101 (208)
Q Consensus 22 ~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~~l~~~~~~~~~~~ 101 (208)
+.+.|+||++.+..+ +.++|||.||..|+.+|+... ...||. |+..+...++...+ ..+.+.
T Consensus 22 ~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~~~~~~-~~l~~~---- 83 (116)
T 1rmd_A 22 KSISCQICEHILADP----VETSCKHLFCRICILRCLKVM-------GSYCPS--CRYPCFPTDLESPV-KSFLNI---- 83 (116)
T ss_dssp HHTBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHT-------CSBCTT--TCCBCCGGGCBCCC-HHHHHH----
T ss_pred CCCCCCCCCcHhcCc----EEcCCCCcccHHHHHHHHhHC-------cCcCCC--CCCCCCHhhccccH-HHHHHH----
Confidence 357999999999665 357999999999999999762 248999 99998887765432 122121
Q ss_pred HHhhhhcCCCcccCcccccccchhcch
Q 035729 102 LCEDYVRGYERSYCPNRNCMALVVNEC 128 (208)
Q Consensus 102 ~~~~~~~~~~~~~Cp~~~C~~~~~~~~ 128 (208)
+. .-.++||+.+|+..+....
T Consensus 84 i~------~l~v~C~~~gC~~~~~~~~ 104 (116)
T 1rmd_A 84 LN------SLMVKCPAQDCNEEVSLEK 104 (116)
T ss_dssp HH------HCEEECCSTTCCCEEEHHH
T ss_pred HH------HhcCCCCCCCCcchhhHhH
Confidence 11 1256799989988776544
No 14
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.92 E-value=1.8e-09 Score=69.79 Aligned_cols=60 Identities=27% Similarity=0.509 Sum_probs=47.1
Q ss_pred CCCccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCccccc
Q 035729 20 NGSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDPFSCK 87 (208)
Q Consensus 20 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~ 87 (208)
....++|+||++.+..+ +.++|+|.||..|+..|+...... ...+.||. |+..+...++.
T Consensus 16 ~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~--~~~~~CP~--Cr~~~~~~~~~ 75 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEP----VSADCNHSFCRACITLNYESNRNT--DGKGNCPV--CRVPYPFGNLK 75 (85)
T ss_dssp CCTTTSCTTTCSCCSSC----EECTTSCCBCHHHHHHHHHHSBCT--TSCBCCTT--TCCCCCTTCCE
T ss_pred CccCCCCcCCChhhCcc----eeCCCCCHHHHHHHHHHHHhccCC--CCCCCCCC--CCCcCCHHhCC
Confidence 34578999999999665 367899999999999999875422 34579999 99988766544
No 15
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.92 E-value=1.8e-09 Score=73.67 Aligned_cols=71 Identities=24% Similarity=0.586 Sum_probs=52.4
Q ss_pred CccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCcccccCCC-ChhHHHHHHH
Q 035729 22 SSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDPFSCKPMI-PSSLFSKWCD 100 (208)
Q Consensus 22 ~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~~l-~~~~~~~~~~ 100 (208)
..+.|+||++.+..+ +.++|||.||..|+..|+... ...+.||. |+..+....+.... -.++++.+..
T Consensus 20 ~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~-----~~~~~CP~--Cr~~~~~~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 20 KILECPICLELIKEP----VSTKCDHIFCKFCMLKLLNQK-----KGPSQCPL--CKNDITKRSLQESTRFSQLVEELLK 88 (112)
T ss_dssp HHTSCSSSCCCCSSC----CBCTTSCCCCSHHHHHHHHSS-----SSSCCCTT--TSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred CCCCCcccChhhcCe----EECCCCCHHHHHHHHHHHHhC-----CCCCCCcC--CCCcCCHhhcCccHHHHHHHHHHHH
Confidence 457999999999655 367999999999999998742 23479999 99988887765433 2355566655
Q ss_pred HHH
Q 035729 101 LLC 103 (208)
Q Consensus 101 ~~~ 103 (208)
.+.
T Consensus 89 ~~~ 91 (112)
T 1jm7_A 89 IIC 91 (112)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 16
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.88 E-value=1e-09 Score=65.03 Aligned_cols=52 Identities=21% Similarity=0.506 Sum_probs=41.6
Q ss_pred CCccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCC
Q 035729 21 GSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLD 82 (208)
Q Consensus 21 ~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 82 (208)
....+|+||++++...+.....++|+|.||..|+.+|+... ..||. |+..++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG--------YRCPL--CSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT--------CCCTT--SCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC--------CcCCC--CCCcCC
Confidence 34678999999986544344688999999999999998763 58999 988764
No 17
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.87 E-value=2.9e-10 Score=72.68 Aligned_cols=61 Identities=25% Similarity=0.459 Sum_probs=46.5
Q ss_pred CCCccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCccccc
Q 035729 20 NGSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDPFSCK 87 (208)
Q Consensus 20 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~ 87 (208)
..+.++|+||++.+..+ +.++|+|.||..|+.+|+...... ......||. |+..+...++.
T Consensus 9 ~~~~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~~~~~~~~~-~~~~~~CP~--Cr~~~~~~~l~ 69 (79)
T 2egp_A 9 VQEEVTCPICLELLTEP----LSLDCGHSLCRACITVSNKEAVTS-MGGKSSCPV--CGISYSFEHLQ 69 (79)
T ss_dssp CCCCCEETTTTEECSSC----CCCSSSCCCCHHHHSCCCCCCSSS-CCCCCCCSS--SCCCCCSSGGG
T ss_pred cccCCCCcCCCcccCCe----eECCCCCHHHHHHHHHHHHhcccC-CCCCCcCCC--CCCcCCHhhCC
Confidence 34578999999999665 367999999999999988653322 234679999 99988765544
No 18
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.86 E-value=1.4e-09 Score=67.98 Aligned_cols=60 Identities=22% Similarity=0.665 Sum_probs=47.0
Q ss_pred CCCcccccccccccccc---ccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCcccccCC
Q 035729 20 NGSSFTCEICIEPMAAN---KKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDPFSCKPM 89 (208)
Q Consensus 20 ~~~~~~C~iC~~~~~~~---~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~~ 89 (208)
..+..+|+||++.+..+ ....+.++|+|.||..|+.+|+... ..||. |+..+...++..+
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPT--CRKKINHKRYHPI 69 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC--------SBCTT--TCCBCCCCSCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC--------CCCCC--CCCccChhheeec
Confidence 34568999999998654 1223578999999999999998642 48999 9999888777654
No 19
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.85 E-value=3.6e-09 Score=67.39 Aligned_cols=67 Identities=22% Similarity=0.432 Sum_probs=49.6
Q ss_pred CCccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCccccc-CCCChhHHHHHH
Q 035729 21 GSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDPFSCK-PMIPSSLFSKWC 99 (208)
Q Consensus 21 ~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~-~~l~~~~~~~~~ 99 (208)
.+.+.|+||++.+..+ +.++|||.||..|+.+|+.. ....||. |+..+...++. ...-.++++.|.
T Consensus 6 ~~~~~C~IC~~~~~~P----v~~~CgH~fc~~Ci~~~~~~-------~~~~CP~--C~~~~~~~~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP----VIVSTGQTYERSSIQKWLDA-------GHKTCPK--SQETLLHAGLTPNYVLKSLIALWC 72 (78)
T ss_dssp SSSSSCTTTSCCCSSE----EEETTTEEEEHHHHHHHHTT-------TCCBCTT--TCCBCSSCCCEECTTTHHHHHHHH
T ss_pred cccCCCCCccccccCC----EEcCCCCeecHHHHHHHHHH-------CcCCCCC--CcCCCChhhCccCHHHHHHHHHHH
Confidence 4578999999999765 46799999999999999952 1468999 99988766544 333345566554
Q ss_pred H
Q 035729 100 D 100 (208)
Q Consensus 100 ~ 100 (208)
.
T Consensus 73 ~ 73 (78)
T 1t1h_A 73 E 73 (78)
T ss_dssp H
T ss_pred H
Confidence 3
No 20
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=4e-09 Score=64.31 Aligned_cols=48 Identities=23% Similarity=0.538 Sum_probs=37.4
Q ss_pred ccCCCccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCc
Q 035729 18 EGNGSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPG 74 (208)
Q Consensus 18 ~~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~ 74 (208)
+.....++|+||++.+..+ +.++|+|.||..||.+|+... .....||.
T Consensus 15 ~~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~-----~~~~~CP~ 62 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKP----VTIDCGHNFCLKCITQIGETS-----CGFFKCPL 62 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSC----EECTTSSEECHHHHHHHHHHC-----SSCCCCSC
T ss_pred HhCccCCCCCcCCchhCCe----EEeCCCCcchHHHHHHHHHcC-----CCCCcCcC
Confidence 3345578999999999755 367999999999999999751 23468887
No 21
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.82 E-value=4.9e-09 Score=66.73 Aligned_cols=57 Identities=19% Similarity=0.444 Sum_probs=41.5
Q ss_pred CCccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCcccc
Q 035729 21 GSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDPFSC 86 (208)
Q Consensus 21 ~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i 86 (208)
.+..+|+||++.+...+..+...+|||.||..||.+++.. ....||. |+..+....+
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~-------~~~~CP~--CR~~~~~~~~ 65 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD-------ENGLCPA--CRKPYPEDPA 65 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS-------SCSBCTT--TCCBCSSCSS
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc-------CCCCCCC--CCCccCCCch
Confidence 4568999999988544322223359999999999988632 2468999 9998776544
No 22
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.81 E-value=3.6e-09 Score=69.55 Aligned_cols=51 Identities=25% Similarity=0.571 Sum_probs=41.0
Q ss_pred cCCCccccccccccccccccccccCC-CCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCC
Q 035729 19 GNGSSFTCEICIEPMAANKKFKNKNL-CTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNL 81 (208)
Q Consensus 19 ~~~~~~~C~iC~~~~~~~~~~~~~~~-C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l 81 (208)
.....+.|+||++.+..+ +.++ |||.||..||..|+... ....||. |+..+
T Consensus 9 ~~~~~~~C~IC~~~~~~p----~~~~~CgH~fC~~Ci~~~~~~~------~~~~CP~--Cr~~~ 60 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDA----VVIPCCGNSYCDECIRTALLES------DEHTCPT--CHQND 60 (92)
T ss_dssp CCCTTTEETTTTEECSSC----EECTTTCCEECHHHHHHHHHHC------TTCCCTT--TCCSS
T ss_pred cCCcCCCCCCCChhhcCc----eECCCCCCHHHHHHHHHHHHhc------CCCcCcC--CCCcC
Confidence 335578999999999765 3677 99999999999998742 2369999 99876
No 23
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.79 E-value=8.5e-09 Score=71.04 Aligned_cols=87 Identities=23% Similarity=0.395 Sum_probs=60.8
Q ss_pred ccCCCccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCcccccCCCChhHHHH
Q 035729 18 EGNGSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDPFSCKPMIPSSLFSK 97 (208)
Q Consensus 18 ~~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~~l~~~~~~~ 97 (208)
....+.+.|+||++.+..+ +.++|+|.||..|+..|+...- ..||. |+..+...++. ....+++
T Consensus 13 ~~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~-------~~CP~--Cr~~~~~~~~~---~~~~l~~ 76 (118)
T 3hct_A 13 PPLESKYECPICLMALREA----VQTPCGHRFCKACIIKSIRDAG-------HKCPV--DNEILLENQLF---PDNFAKR 76 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHHC-------SBCTT--TCCBCCGGGCE---ECHHHHH
T ss_pred cCCCCCCCCCcCChhhcCe----EECCcCChhhHHHHHHHHhhCC-------CCCCC--CCCCcCHHhcc---cCHHHHH
Confidence 3445578999999999765 3679999999999999987531 38999 99988765443 2222222
Q ss_pred HHHHHHhhhhcCCCcccCcccccccchhcchh
Q 035729 98 WCDLLCEDYVRGYERSYCPNRNCMALVVNECE 129 (208)
Q Consensus 98 ~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~ 129 (208)
. .. .-.++||+.+|...+.....
T Consensus 77 ~----i~-----~l~v~C~n~gC~~~~~~~~l 99 (118)
T 3hct_A 77 E----IL-----SLMVKCPNEGCLHKMELRHL 99 (118)
T ss_dssp H----HH-----TSEEECSSTTCCCEEEGGGS
T ss_pred H----Hc-----cceeECCCCCCCCEEeeHHH
Confidence 1 11 23678998899887765543
No 24
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.78 E-value=2.3e-09 Score=65.43 Aligned_cols=58 Identities=22% Similarity=0.680 Sum_probs=45.3
Q ss_pred Ccccccccccccccc---ccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCcccccCC
Q 035729 22 SSFTCEICIEPMAAN---KKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDPFSCKPM 89 (208)
Q Consensus 22 ~~~~C~iC~~~~~~~---~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~~ 89 (208)
+..+|+||++.+..+ ....+.++|+|.||..|+.+|+.. ...||. |+..+...++..+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH--------CSBCTT--TCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc--------CCCCCC--CCccCCccceeee
Confidence 357899999998653 122247899999999999999875 248999 9998888776654
No 25
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.77 E-value=4.6e-09 Score=66.84 Aligned_cols=59 Identities=27% Similarity=0.608 Sum_probs=45.9
Q ss_pred cCCCccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCcccccC
Q 035729 19 GNGSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDPFSCKP 88 (208)
Q Consensus 19 ~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~ 88 (208)
......+|+||++.+...... ..++|+|.||..|+.+|+.. ...||. |+..+....+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~-~~~~C~H~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~~~~ 69 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESV-RQLPCNHLFHDSCIVPWLEQ--------HDSCPV--CRKSLTGQNTAT 69 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCE-EECTTSCEEETTTTHHHHTT--------TCSCTT--TCCCCCCSCSCC
T ss_pred cCCCCCCCeeCCccccCCCCE-EEeCCCCeecHHHHHHHHHc--------CCcCcC--cCCccCCcccCC
Confidence 345578999999999765443 46799999999999999842 148999 999888766654
No 26
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.77 E-value=8.4e-09 Score=64.01 Aligned_cols=54 Identities=20% Similarity=0.623 Sum_probs=41.7
Q ss_pred cCCCccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCc
Q 035729 19 GNGSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDP 83 (208)
Q Consensus 19 ~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 83 (208)
......+|+||++.+...+.. +.++|+|.||..|+..|+... ..||. |+..+..
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~-~~~~C~H~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~ 63 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDV-RRLPCMHLFHQVCVDQWLITN--------KKCPI--CRVDIEA 63 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCE-EECTTSCEEEHHHHHHHHHHC--------SBCTT--TCSBSCS
T ss_pred cCCCCCCCeeCCccccCCCcE-EEeCCCCHHHHHHHHHHHHcC--------CCCcC--cCccccC
Confidence 345567999999998654433 478999999999999998752 26999 9987654
No 27
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=7.7e-09 Score=66.35 Aligned_cols=50 Identities=22% Similarity=0.543 Sum_probs=41.2
Q ss_pred cCCCccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCC
Q 035729 19 GNGSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLD 82 (208)
Q Consensus 19 ~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 82 (208)
.....+.|+||++.+..+ +.++|+|.||..|+..|+.. ...||. |+..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNP----VVTKCRHYFCESCALEHFRA--------TPRCYI--CDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCCSE----EECTTSCEEEHHHHHHHHHH--------CSBCSS--SCCBCC
T ss_pred cCCCCCCCcCCCchhcCe----eEccCCCHhHHHHHHHHHHC--------CCcCCC--cCcccc
Confidence 445578999999999654 36899999999999999964 248999 999875
No 28
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=6.3e-09 Score=64.46 Aligned_cols=55 Identities=22% Similarity=0.677 Sum_probs=42.2
Q ss_pred cCCCccccccccccccccc---cccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCc
Q 035729 19 GNGSSFTCEICIEPMAANK---KFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDP 83 (208)
Q Consensus 19 ~~~~~~~C~iC~~~~~~~~---~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 83 (208)
......+|+||++.+..+. ..++.++|+|.||..|+..|+.. ...||. |+..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH--------CSSCTT--TCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc--------CCCCCC--CCCccCc
Confidence 3455789999999986541 22247899999999999999865 248999 9987653
No 29
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.75 E-value=1.1e-08 Score=68.44 Aligned_cols=56 Identities=23% Similarity=0.601 Sum_probs=45.3
Q ss_pred CCcccccccccccccccccccc-CCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCcccccCC
Q 035729 21 GSSFTCEICIEPMAANKKFKNK-NLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDPFSCKPM 89 (208)
Q Consensus 21 ~~~~~C~iC~~~~~~~~~~~~~-~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~~ 89 (208)
.+.+.|+||++.+..+ +. ++|||.||..||..|+... ...||. |+..+...++...
T Consensus 20 ~~~~~C~IC~~~~~~p----~~~~~CgH~FC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~l~~~ 76 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDA----RLCPHCSKLCCFSCIRRWLTEQ-------RAQCPH--CRAPLQLRELVNC 76 (100)
T ss_dssp HHHTBCTTTCSBCSSE----EECTTTCCEEEHHHHHHHHHHT-------CSBCTT--TCCBCCGGGCEEC
T ss_pred CCCCCCccCCccccCc----cccCCCCChhhHHHHHHHHHHC-------cCCCCC--CCCcCCHHHhHhh
Confidence 3467999999999655 35 8999999999999999763 158999 9999887766543
No 30
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.75 E-value=8.5e-09 Score=64.98 Aligned_cols=51 Identities=25% Similarity=0.571 Sum_probs=40.7
Q ss_pred cCCCccccccccccccccccccccCC-CCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCC
Q 035729 19 GNGSSFTCEICIEPMAANKKFKNKNL-CTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNL 81 (208)
Q Consensus 19 ~~~~~~~C~iC~~~~~~~~~~~~~~~-C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l 81 (208)
.....+.|+||++.+..+ +.++ |+|.||..||..|+... ....||. |+..+
T Consensus 11 ~~~~~~~C~IC~~~~~~p----~~~~~CgH~fC~~Ci~~~~~~~------~~~~CP~--Cr~~~ 62 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDA----VVIPCCGNSYCDECIRTALLES------DEHTCPT--CHQND 62 (74)
T ss_dssp CSCGGGSCSSSCCCCTTC----EECSSSCCEECTTHHHHHHHHS------SSSCCSS--SCCSS
T ss_pred cCCCCCCCcCCChHHhCC----eEcCCCCCHHHHHHHHHHHHhc------CCCcCCC--CCCcC
Confidence 344578999999999765 3577 99999999999999752 1468999 99854
No 31
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=2.2e-09 Score=67.18 Aligned_cols=56 Identities=18% Similarity=0.387 Sum_probs=43.8
Q ss_pred cCCCccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCcccccC
Q 035729 19 GNGSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDPFSCKP 88 (208)
Q Consensus 19 ~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~ 88 (208)
......+|+||++.+..+ +.++|+|.||..|+..|+.. ...||. |+..+....+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~----~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~~~~ 66 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHP----VSLPCKHVFCYLCVKGASWL--------GKRCAL--CRQEIPEDFLDS 66 (71)
T ss_dssp SSSSCCBCSSSSSBCSSE----EEETTTEEEEHHHHHHCTTC--------SSBCSS--SCCBCCHHHHSC
T ss_pred cCCCCCCCccCCcccCCC----EEccCCCHHHHHHHHHHHHC--------CCcCcC--cCchhCHhhccC
Confidence 344568999999998654 36689999999999998742 258999 999888766554
No 32
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=9.3e-09 Score=61.46 Aligned_cols=47 Identities=23% Similarity=0.641 Sum_probs=36.1
Q ss_pred cCCCccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCc
Q 035729 19 GNGSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPG 74 (208)
Q Consensus 19 ~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~ 74 (208)
.......|+||++.+..+ +.++|+|.||..|+.+|+... .....||.
T Consensus 11 ~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~-----~~~~~CP~ 57 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEP----VIIECGHNFCKACITRWWEDL-----ERDFPCPV 57 (58)
T ss_dssp CSCCCCBCSSSCCBCSSC----CCCSSCCCCCHHHHHHHTTSS-----CCSCCCSC
T ss_pred ccccCCCCccCCcccCcc----EeCCCCCccCHHHHHHHHHhc-----CCCCCCCC
Confidence 344568999999999665 468999999999999997531 23468886
No 33
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.70 E-value=8.6e-10 Score=78.42 Aligned_cols=88 Identities=16% Similarity=0.328 Sum_probs=59.4
Q ss_pred cCCCccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCcccccC------CCCh
Q 035729 19 GNGSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDPFSCKP------MIPS 92 (208)
Q Consensus 19 ~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~------~l~~ 92 (208)
...+.+.|+||++.+..+ +.++|||.||..||..|+.. ....||. |+..+....... ++.+
T Consensus 27 ~l~~~~~C~IC~~~~~~p----v~~~CgH~FC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~~~~~~~l~~~~~~~d 93 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRP----FQAQCGHRYCSFCLASILSS-------GPQNCAA--CVHEGIYEEGISILESSSAFPD 93 (141)
T ss_dssp GCCGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHGGG-------SCEECHH--HHHTTCCCTTTTEECGGGCEEC
T ss_pred cCCcCcCCCCCChhhcCc----EECCCCCccCHHHHHHHHhc-------CCCCCCC--CCCcccccccccccchhhhccc
Confidence 445678999999999766 36799999999999998842 2358998 988665443222 2222
Q ss_pred hHHHHHHHHHHhhhhcCCCcccCcccccccchhcch
Q 035729 93 SLFSKWCDLLCEDYVRGYERSYCPNRNCMALVVNEC 128 (208)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~ 128 (208)
..+++. +. .-.++||+.+|...+....
T Consensus 94 ~~~~~~--------i~-~L~v~Cpn~GC~~~~~l~~ 120 (141)
T 3knv_A 94 NAARRE--------VE-SLPAVCPSDGCTWKGTLKE 120 (141)
T ss_dssp HHHHHH--------HH-TSEEECCSTTCCCEEEHHH
T ss_pred HHHHHH--------Hc-ccccccCCCCCCCEeEHHH
Confidence 222221 11 2367899989988776544
No 34
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=1.2e-08 Score=64.22 Aligned_cols=52 Identities=23% Similarity=0.597 Sum_probs=40.9
Q ss_pred CCCccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCC
Q 035729 20 NGSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLD 82 (208)
Q Consensus 20 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 82 (208)
.....+|+||++.+...... ..++|+|.||..|+..|+... ..||. |+..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~-~~~~C~H~f~~~Ci~~~~~~~--------~~CP~--Cr~~~~ 63 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDEL-GICPCKHAFHRKCLIKWLEVR--------KVCPL--CNMPVL 63 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCE-EEETTTEEEEHHHHHHHHHHC--------SBCTT--TCCBCS
T ss_pred CCCCCCCcCCCcccCCCCcE-EEcCCCCEecHHHHHHHHHcC--------CcCCC--cCcccc
Confidence 34467999999999766544 356899999999999998652 27999 998654
No 35
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.68 E-value=8.2e-09 Score=65.20 Aligned_cols=53 Identities=21% Similarity=0.624 Sum_probs=42.2
Q ss_pred CCCccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCc
Q 035729 20 NGSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDP 83 (208)
Q Consensus 20 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 83 (208)
.....+|+||++++...+.+ ..++|+|.||..|+..|+... ..||. |+..+..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~-~~l~C~H~fh~~Ci~~w~~~~--------~~CP~--Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLL-RVLPCNHEFHAKCVDKWLKAN--------RTCPI--CRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEE-EEETTTEEEETTHHHHHHHHC--------SSCTT--TCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeE-EEECCCCHhHHHHHHHHHHcC--------CcCcC--cCCcCCC
Confidence 34567999999999766544 467899999999999998642 37999 9987765
No 36
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.64 E-value=3.1e-08 Score=65.82 Aligned_cols=56 Identities=13% Similarity=-0.064 Sum_probs=44.7
Q ss_pred cccCCCccccccccccccccccccccCCCC-ChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCcccc
Q 035729 17 EEGNGSSFTCEICIEPMAANKKFKNKNLCT-HPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDPFSC 86 (208)
Q Consensus 17 ~~~~~~~~~C~iC~~~~~~~~~~~~~~~C~-H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i 86 (208)
.......+.|+||++.+.++ +.++|| |.||+.||..|+.. ...||. |+..+...++
T Consensus 16 ~~~~p~~~~CpI~~~~m~dP----V~~~cG~htf~r~cI~~~l~~--------~~~cP~--~~~~l~~~~L 72 (98)
T 1wgm_A 16 YADACDEFLDPIMSTLMCDP----VVLPSSRVTVDRSTIARHLLS--------DQTDPF--NRSPLTMDQI 72 (98)
T ss_dssp CCSCCTTTBCTTTCSBCSSE----EECTTTCCEEEHHHHHHHTTT--------SCBCTT--TCSBCCTTTS
T ss_pred hhcCcHhcCCcCccccccCC----eECCCCCeEECHHHHHHHHHh--------CCCCCC--CCCCCChhhc
Confidence 33445689999999999776 578999 99999999999863 248999 9998876543
No 37
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.62 E-value=6.3e-08 Score=62.64 Aligned_cols=54 Identities=9% Similarity=-0.063 Sum_probs=44.2
Q ss_pred CCCccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCccccc
Q 035729 20 NGSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDPFSCK 87 (208)
Q Consensus 20 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~ 87 (208)
....+.|+||++.+..+ +.++|||.||+.||..|+.. ...||. |+..+...++.
T Consensus 11 ~p~~~~CpI~~~~m~dP----V~~~cGhtf~r~~I~~~l~~--------~~~cP~--~~~~l~~~~l~ 64 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDP----VRLPSGTVMDRSIILRHLLN--------SPTDPF--NRQMLTESMLE 64 (85)
T ss_dssp CCTTTBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHH--------CSBCTT--TCCBCCGGGCE
T ss_pred CchheECcccCchhcCC----eECCCCCEECHHHHHHHHhc--------CCCCCC--CcCCCChHhcc
Confidence 34579999999999776 57889999999999999974 148999 99988765443
No 38
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.61 E-value=2.5e-08 Score=66.39 Aligned_cols=68 Identities=25% Similarity=0.503 Sum_probs=47.4
Q ss_pred CCccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCcccccC-CCChhHHHHHH
Q 035729 21 GSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDPFSCKP-MIPSSLFSKWC 99 (208)
Q Consensus 21 ~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~-~l~~~~~~~~~ 99 (208)
.+.+.|+||++.+..+. ...+|||.||..|+..|+.. ...||. |+..+...++.. ..-.++++.|.
T Consensus 20 ~~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~l~~n~~l~~~i~~~~ 86 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAM---IIPQCSHNYCSLCIRKFLSY--------KTQCPT--CCVTVTEPDLKNNRILDELVKSLN 86 (99)
T ss_dssp HHHTBCTTTCSBCSSEE---ECTTTCCEEEHHHHHHHHTT--------CCBCTT--TCCBCCGGGCEECHHHHHHHHHHH
T ss_pred CCCCCcccCChhhCCcC---EECCCCCHhhHHHHHHHHHC--------CCCCCC--CCCcCChhhCCcCHHHHHHHHHHH
Confidence 34689999999997651 23489999999999999862 258999 999887654432 22224445554
Q ss_pred HH
Q 035729 100 DL 101 (208)
Q Consensus 100 ~~ 101 (208)
..
T Consensus 87 ~~ 88 (99)
T 2y43_A 87 FA 88 (99)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.59 E-value=2.3e-08 Score=69.38 Aligned_cols=49 Identities=24% Similarity=0.746 Sum_probs=40.3
Q ss_pred CccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCc
Q 035729 22 SSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDP 83 (208)
Q Consensus 22 ~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 83 (208)
..+.|+||++.+..+ +.++|||.||..|+..|+.. ....||. |+..+..
T Consensus 51 ~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRP----ITTVCQHNVCKDCLDRSFRA-------QVFSCPA--CRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSE----EECTTSCEEEHHHHHHHHHT-------TCCBCTT--TCCBCCT
T ss_pred cCCCCCcCChHHcCc----EEeeCCCcccHHHHHHHHhH-------CcCCCCC--CCccCCC
Confidence 357899999999765 46799999999999999872 2358999 9998765
No 40
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.56 E-value=2.3e-08 Score=59.07 Aligned_cols=50 Identities=20% Similarity=0.596 Sum_probs=38.5
Q ss_pred CccccccccccccccccccccCC-CCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCC
Q 035729 22 SSFTCEICIEPMAANKKFKNKNL-CTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLD 82 (208)
Q Consensus 22 ~~~~C~iC~~~~~~~~~~~~~~~-C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 82 (208)
+..+|+||++++...+.. ..++ |+|.||..|+.+|+.. ...||. |+..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~-~~~~~C~H~f~~~Ci~~w~~~--------~~~CP~--Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEA-RFLPRCGHGFHAECVDMWLGS--------HSTCPL--CRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCC-EECSSSCCEECTTHHHHTTTT--------CCSCSS--SCCCSC
T ss_pred CCCcCccCCccccCCCce-EECCCCCCcccHHHHHHHHHc--------CCcCcC--CCCEeE
Confidence 457899999999765544 3454 9999999999998742 247999 988654
No 41
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.56 E-value=9.2e-09 Score=61.19 Aligned_cols=47 Identities=21% Similarity=0.556 Sum_probs=37.9
Q ss_pred CCCccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCc
Q 035729 20 NGSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDP 83 (208)
Q Consensus 20 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 83 (208)
+.+.++|+||++.+..+ +.++|+|.||..|+.. ..+.||. |+..+..
T Consensus 3 e~~~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~-----------~~~~CP~--Cr~~~~~ 49 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCP----KLLPCLHTLCSGCLEA-----------SGMQCPI--CQAPWPL 49 (56)
T ss_dssp SCCCSSCSSSCSSCBCC----SCSTTSCCSBTTTCSS-----------SSSSCSS--CCSSSSC
T ss_pred cccCCCceEeCCccCCe----EEcCCCCcccHHHHcc-----------CCCCCCc--CCcEeec
Confidence 35578899999999765 4789999999999866 2468999 9987654
No 42
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.54 E-value=7.6e-08 Score=63.48 Aligned_cols=61 Identities=28% Similarity=0.548 Sum_probs=47.0
Q ss_pred CCccccccccccccccccccccC-CCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCC-CCccccc
Q 035729 21 GSSFTCEICIEPMAANKKFKNKN-LCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKN-LDPFSCK 87 (208)
Q Consensus 21 ~~~~~C~iC~~~~~~~~~~~~~~-~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~-l~~~~i~ 87 (208)
...+.|+||++.+..+ +.+ .|||.||+.||..|+...-. ......||..+|... +...++.
T Consensus 5 ~~~~~CPI~~~~~~dP----V~~~~cGh~f~r~cI~~~l~~~~~--~~~~~~CP~tgc~~~~l~~~~L~ 67 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP----VKNKVCGHTYEEDAIVRMIESRQK--RKKKAYCPQIGCSHTDIRKSDLI 67 (94)
T ss_dssp SSCCBCTTTCSBCSSE----EEESSSCCEEEHHHHHHHHHHHHT--TTCCBCCCSTTCCCCCBCGGGEE
T ss_pred CcEeECcCcCchhcCC----EEcCCCCCeecHHHHHHHHHHccC--cCCCCCCCcCcCcccccCHhhCc
Confidence 4578999999999766 466 49999999999999976421 124579999999876 7665543
No 43
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.54 E-value=2.5e-08 Score=68.17 Aligned_cols=57 Identities=21% Similarity=0.486 Sum_probs=41.6
Q ss_pred Cccccccccccccccc--------------cccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCc
Q 035729 22 SSFTCEICIEPMAANK--------------KFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDP 83 (208)
Q Consensus 22 ~~~~C~iC~~~~~~~~--------------~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 83 (208)
...+|+||++++..+. .....++|+|.||..||..|+.... ......||. |+..+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~---~~~~~~CP~--CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN---KDGSLQCPS--CKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTC---CSSCCBCTT--TCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHccc---CCCCCcCCC--CCCccCC
Confidence 3469999999985532 2223689999999999999995432 123469999 9986643
No 44
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=9.9e-09 Score=63.88 Aligned_cols=54 Identities=28% Similarity=0.576 Sum_probs=41.6
Q ss_pred cCCCccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCccccc
Q 035729 19 GNGSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDPFSCK 87 (208)
Q Consensus 19 ~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~ 87 (208)
.......|+||++.+.. +.++|+|.||..|+..|+. ....||. |+..+...+..
T Consensus 11 ~~~~~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~~--------~~~~CP~--Cr~~~~~~~~~ 64 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-----LILPCAHSFCQKCIDKWSD--------RHRNCPI--CRLQMTGANES 64 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-----EEETTTEEECHHHHHHSSC--------CCSSCHH--HHHCTTCCCCC
T ss_pred cCCCCCCCeeCCcCccC-----cccCCCCcccHHHHHHHHH--------CcCcCCC--cCCcccCCCcc
Confidence 33457899999999854 3679999999999999874 2468998 99877654433
No 45
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.51 E-value=1e-07 Score=68.29 Aligned_cols=50 Identities=26% Similarity=0.702 Sum_probs=41.2
Q ss_pred CccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCcc
Q 035729 22 SSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDPF 84 (208)
Q Consensus 22 ~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~ 84 (208)
..+.|+||++.+..+ +.++|+|.||..|+..|+.. ....||. |+..+...
T Consensus 77 ~~~~C~IC~~~~~~p----v~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP----VTTECFHNVCKDCLQRSFKA-------QVFSCPA--CRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSE----EECTTSCEEEHHHHHHHHHT-------TCCBCTT--TCCBCCTT
T ss_pred cCCEeecCChhhcCC----EEcCCCCchhHHHHHHHHHh-------CCCcCCC--CCccCCCC
Confidence 357899999999765 46899999999999999963 2358999 99987765
No 46
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.50 E-value=4.9e-08 Score=63.98 Aligned_cols=52 Identities=25% Similarity=0.619 Sum_probs=40.5
Q ss_pred CCccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCc
Q 035729 21 GSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDP 83 (208)
Q Consensus 21 ~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 83 (208)
....+|+||++.+...+.. ..++|+|.||..|+..|+.. ...||. |+..+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~-~~l~C~H~Fh~~Ci~~wl~~--------~~~CP~--Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVA-TELPCHHYFHKPCVSIWLQK--------SGTCPV--CRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEE-EEETTTEEEEHHHHHHHHTT--------TCBCTT--TCCBSSC
T ss_pred CCCCCCcccChhhcCCCcE-EecCCCChHHHHHHHHHHHc--------CCcCcC--cCccCCC
Confidence 3467899999999665433 46789999999999999842 138999 9987654
No 47
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.50 E-value=1.4e-08 Score=62.72 Aligned_cols=48 Identities=29% Similarity=0.697 Sum_probs=38.6
Q ss_pred CccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCC
Q 035729 22 SSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLD 82 (208)
Q Consensus 22 ~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 82 (208)
...+|+||++.+..+. +.++|+|.||..|+.+|+... ..||. |+..+.
T Consensus 4 ~~~~C~IC~~~~~~~~---~~~~C~H~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNYS---MALPCLHAFCYVCITRWIRQN--------PTCPL--CKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSCE---EETTTTEEESTTHHHHHHHHS--------CSTTT--TCCCCC
T ss_pred CCCCCeeCCccccCCc---EecCCCCeeHHHHHHHHHhCc--------CcCcC--CChhhH
Confidence 4568999999986431 478999999999999998542 38999 998775
No 48
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.44 E-value=5.7e-08 Score=68.72 Aligned_cols=48 Identities=35% Similarity=0.825 Sum_probs=38.6
Q ss_pred ccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCcc
Q 035729 23 SFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDPF 84 (208)
Q Consensus 23 ~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~ 84 (208)
.++|+||++.+..+ +.++|||.||..|+..|+.. ...||. |+..+...
T Consensus 53 ~~~C~iC~~~~~~~----~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFIEA----VTLNCAHSFCSYCINEWMKR--------KIECPI--CRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCSSE----EEETTSCEEEHHHHHHHTTT--------CSBCTT--TCCBCCCE
T ss_pred cCCCcccCcccCCc----eECCCCCCccHHHHHHHHHc--------CCcCCC--CCCcCCCC
Confidence 46899999999655 46799999999999998742 247999 99877543
No 49
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.44 E-value=4e-08 Score=67.53 Aligned_cols=51 Identities=24% Similarity=0.481 Sum_probs=40.9
Q ss_pred CCccccccccccccccccccccC-CCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCccccc
Q 035729 21 GSSFTCEICIEPMAANKKFKNKN-LCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDPFSCK 87 (208)
Q Consensus 21 ~~~~~C~iC~~~~~~~~~~~~~~-~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~ 87 (208)
...+.|+||++.+..+ +.+ +|||.||..|+..|+. ..||. |+..+...++.
T Consensus 20 ~~~~~C~IC~~~~~~p----v~~~~CgH~fC~~Ci~~~~~----------~~CP~--Cr~~~~~~~~~ 71 (117)
T 1jm7_B 20 EKLLRCSRCTNILREP----VCLGGCEHIFCSNCVSDCIG----------TGCPV--CYTPAWIQDLK 71 (117)
T ss_dssp HHTTSCSSSCSCCSSC----BCCCSSSCCBCTTTGGGGTT----------TBCSS--SCCBCSCSSCC
T ss_pred hhCCCCCCCChHhhCc----cEeCCCCCHHHHHHHHHHhc----------CCCcC--CCCcCcccccc
Confidence 4468999999999765 356 9999999999998864 58999 99987654443
No 50
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.43 E-value=3.5e-08 Score=67.54 Aligned_cols=50 Identities=26% Similarity=0.684 Sum_probs=40.0
Q ss_pred CCccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCc
Q 035729 21 GSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDP 83 (208)
Q Consensus 21 ~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 83 (208)
...+.|+||++.+..+ +.++|||.||..|+..|+.. ....||. |+..+..
T Consensus 13 ~~~~~C~iC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEP----VTLPCNHTLCKPCFQSTVEK-------ASLCCPF--CRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSC----EECTTSCEECHHHHCCCCCT-------TTSBCTT--TCCBCHH
T ss_pred CCCCCCccCCcccCce----eEcCCCCHHhHHHHHHHHhH-------CcCCCCC--CCcccCc
Confidence 3468999999999655 46799999999999988742 2368999 9998764
No 51
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.41 E-value=1.2e-07 Score=63.17 Aligned_cols=53 Identities=9% Similarity=-0.060 Sum_probs=43.0
Q ss_pred CCCccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCcccc
Q 035729 20 NGSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDPFSC 86 (208)
Q Consensus 20 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i 86 (208)
....+.|+||++.+..+ +.++|||.||+.||..|+.. ...||. |+..++..++
T Consensus 26 ~p~~~~CpI~~~~m~dP----V~~~cGhtf~r~~I~~~l~~--------~~~cP~--~~~~l~~~~L 78 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDP----VRLPSGTIMDRSIILRHLLN--------SPTDPF--NRQTLTESML 78 (100)
T ss_dssp CSTTTBCTTTCSBCSSE----EEETTTEEEEHHHHHHHTTS--------CSBCSS--SCCBCCTTSS
T ss_pred CcHhhCCcCccCcccCC----eECCCCCEEchHHHHHHHHc--------CCCCCC--CCCCCChhhc
Confidence 34579999999999776 57789999999999999852 258999 9998876443
No 52
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.40 E-value=4.8e-08 Score=66.13 Aligned_cols=51 Identities=24% Similarity=0.643 Sum_probs=40.5
Q ss_pred CCccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCcc
Q 035729 21 GSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDPF 84 (208)
Q Consensus 21 ~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~ 84 (208)
...+.|+||++.+..+ ....+|||.||..|+..|+.. ...||. |+..+...
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLET--------SKYCPI--CDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTS--------CSBCTT--TCCBSCSS
T ss_pred CCcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHh--------CCcCcC--CCcccccc
Confidence 4578999999999665 123599999999999999853 268999 99877653
No 53
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.38 E-value=2.7e-07 Score=71.19 Aligned_cols=62 Identities=26% Similarity=0.457 Sum_probs=48.3
Q ss_pred cccCCCccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCccccc
Q 035729 17 EEGNGSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDPFSCK 87 (208)
Q Consensus 17 ~~~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~ 87 (208)
.......+.|+||++.+..+ +....|||.||+.||..|+.. .....||..+|+..+...++.
T Consensus 175 v~~~~~el~CPIcl~~f~DP---Vts~~CGHsFcR~cI~~~~~~------~~~~~CPvtGCr~~l~~~dL~ 236 (267)
T 3htk_C 175 IEGGKIELTCPITCKPYEAP---LISRKCNHVFDRDGIQNYLQG------YTTRDCPQAACSQVVSMRDFV 236 (267)
T ss_dssp CCSSBCCSBCTTTSSBCSSE---EEESSSCCEEEHHHHHHHSTT------CSCEECSGGGCSCEECGGGEE
T ss_pred ecCCceeeECcCccCcccCC---eeeCCCCCcccHHHHHHHHHh------CCCCCCCcccccCcCchhhCC
Confidence 34456678999999999776 123599999999999999863 123689999999988776554
No 54
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=1.5e-07 Score=59.38 Aligned_cols=45 Identities=24% Similarity=0.510 Sum_probs=35.4
Q ss_pred CCccccccccccccccccccccCCCCCh-hHHHHHHHHHHHHhhcCCCccccCCccccCCCCCc
Q 035729 21 GSSFTCEICIEPMAANKKFKNKNLCTHP-FCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDP 83 (208)
Q Consensus 21 ~~~~~C~iC~~~~~~~~~~~~~~~C~H~-~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 83 (208)
.+..+|+||++.+..+ ++++|+|. ||..|+.+ ...||. |+..+..
T Consensus 23 ~~~~~C~IC~~~~~~~----~~~pCgH~~~C~~C~~~------------~~~CP~--Cr~~i~~ 68 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAI----VFVPCGHLVTCKQCAEA------------VDKCPM--CYTVITF 68 (75)
T ss_dssp HHHHSCSSSCSSCCCB----CCSSSCCCCBCHHHHHH------------CSBCTT--TCCBCCC
T ss_pred CCCCCCCcCCCCCCCE----EEecCCCHHHHHHHhhC------------CCCCcc--CCceecC
Confidence 3467899999998554 47899999 99999853 158999 9987654
No 55
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.22 E-value=5.9e-07 Score=65.34 Aligned_cols=50 Identities=32% Similarity=0.831 Sum_probs=39.4
Q ss_pred CccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCc
Q 035729 22 SSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDP 83 (208)
Q Consensus 22 ~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 83 (208)
..+.|+||++.+..+ +...+|+|.||..|+..|+.. ....||. |+..+..
T Consensus 53 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKNT---MTTKECLHRFCADCIITALRS-------GNKECPT--CRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHHT-------TCCBCTT--TCCBCCS
T ss_pred CCCCCcccChHhhCc---CEeCCCCChhHHHHHHHHHHh-------CcCCCCC--CCCcCCC
Confidence 356999999999764 124599999999999999863 1368999 9987753
No 56
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.22 E-value=4.2e-07 Score=63.41 Aligned_cols=61 Identities=21% Similarity=0.609 Sum_probs=46.8
Q ss_pred ccCCCcccccccccccccc---ccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCcccccC
Q 035729 18 EGNGSSFTCEICIEPMAAN---KKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDPFSCKP 88 (208)
Q Consensus 18 ~~~~~~~~C~iC~~~~~~~---~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~ 88 (208)
..+.....|+||++.+..+ ....+.++|+|.||..|+..|+... ..||. |+..+..+++..
T Consensus 67 ~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~~~~~~ 130 (133)
T 4ap4_A 67 YIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPT--CRKKINHKRYHP 130 (133)
T ss_dssp BCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC--------SBCTT--TCCBCCGGGEEE
T ss_pred ccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC--------CCCCC--CCCcCChhccee
Confidence 3455678999999998653 1122467999999999999998642 38999 999988877654
No 57
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=3.5e-07 Score=58.53 Aligned_cols=57 Identities=21% Similarity=0.410 Sum_probs=41.0
Q ss_pred CCCccccccccccccc-----------cccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCcccc
Q 035729 20 NGSSFTCEICIEPMAA-----------NKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDPFSC 86 (208)
Q Consensus 20 ~~~~~~C~iC~~~~~~-----------~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i 86 (208)
+.+..+|+||++++.. .+...+...|+|.|+..||.+|+... -.||. |+..+..+.+
T Consensus 12 ~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~--------~~CP~--CR~~~~~~~~ 79 (81)
T 2ecl_A 12 DVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN--------NRCPL--CQQDWVVQRI 79 (81)
T ss_dssp SCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC--------CBCTT--TCCBCCEEEE
T ss_pred cCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC--------CCCCC--cCCCcchhhc
Confidence 3455679999988854 22233345699999999999998532 38999 9998776544
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.15 E-value=6.8e-08 Score=60.77 Aligned_cols=45 Identities=24% Similarity=0.515 Sum_probs=36.1
Q ss_pred CCccccccccccccccccccccCCCCCh-hHHHHHHHHHHHHhhcCCCccccCCccccCCCCCc
Q 035729 21 GSSFTCEICIEPMAANKKFKNKNLCTHP-FCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDP 83 (208)
Q Consensus 21 ~~~~~C~iC~~~~~~~~~~~~~~~C~H~-~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 83 (208)
.+...|.||++.+..+ ++++|+|. ||..|+..+ ..||. |+..+..
T Consensus 22 ~~~~~C~iC~~~~~~~----~~~pCgH~~~C~~C~~~~------------~~CP~--Cr~~i~~ 67 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAI----VFVPCGHLVTCKQCAEAV------------DKCPM--CYTVITF 67 (74)
T ss_dssp HHHTBCTTTSSSBCCE----EEETTCCBCCCHHHHTTC------------SBCTT--TCCBCSE
T ss_pred ccCCCCCCCCCCCCCE----EEcCCCChhHHHHhhhcC------------ccCCC--cCcCccC
Confidence 3457899999988554 46799999 999998765 58999 9987654
No 59
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.10 E-value=2.5e-06 Score=54.32 Aligned_cols=56 Identities=20% Similarity=0.324 Sum_probs=43.0
Q ss_pred cCCCccccccccccccccccccccCCCC-----ChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCcc
Q 035729 19 GNGSSFTCEICIEPMAANKKFKNKNLCT-----HPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDPF 84 (208)
Q Consensus 19 ~~~~~~~C~iC~~~~~~~~~~~~~~~C~-----H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~ 84 (208)
.......|.||++++...+.+ +++|. |.|..+||.+|+... ....||. |+..+..+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l--~~pC~C~Gs~h~fH~~Cl~~Wl~~~------~~~~Cpl--Cr~~~~~~ 71 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPL--ITPCHCTGSLHFVHQACLQQWIKSS------DTRCCEL--CKYEFIME 71 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCE--ECSSSCCSSSCCEETTHHHHHHHHH------CCSBCSS--SCCBCCCC
T ss_pred CCCCCCCCeEcCccccCCCee--EeccccCCcCCeeCHHHHHHHHhhC------CCCCCCC--CCCeeecC
Confidence 344467899999998655544 57885 999999999999764 1358999 99877654
No 60
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.02 E-value=3e-06 Score=52.17 Aligned_cols=48 Identities=21% Similarity=0.530 Sum_probs=37.1
Q ss_pred ccCCCccccccccccccccccccccCCCCCh-hHHHHHHHHHHHHhhcCCCccccCCccccCCCCCc
Q 035729 18 EGNGSSFTCEICIEPMAANKKFKNKNLCTHP-FCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDP 83 (208)
Q Consensus 18 ~~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~-~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 83 (208)
........|.||++..... ++++|+|. ||..|+.. ...||. |+..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~----v~~pCgH~~~C~~C~~~------------~~~CP~--CR~~i~~ 58 (68)
T 2ea5_A 10 PSEENSKDCVVCQNGTVNW----VLLPCRHTCLCDGCVKY------------FQQCPM--CRQFVQE 58 (68)
T ss_dssp CSCCCSSCCSSSSSSCCCC----EETTTTBCCSCTTHHHH------------CSSCTT--TCCCCCC
T ss_pred ccCCCCCCCCCcCcCCCCE----EEECCCChhhhHHHHhc------------CCCCCC--CCcchhc
Confidence 3445568999999987543 57899999 99999983 148999 9987654
No 61
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.01 E-value=4e-06 Score=65.82 Aligned_cols=54 Identities=13% Similarity=0.005 Sum_probs=43.4
Q ss_pred CCCccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCcccc
Q 035729 20 NGSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDPFSC 86 (208)
Q Consensus 20 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i 86 (208)
....+.|+||++.+..+ ++++|||+||+.||..|+... . ..||. |+..++..++
T Consensus 205 ~~~~~~c~i~~~~~~dP----v~~~~gh~f~~~~i~~~~~~~----~---~~cP~--~~~~~~~~~l 258 (281)
T 2c2l_A 205 IPDYLCGKISFELMREP----CITPSGITYDRKDIEEHLQRV----G---HFNPV--TRSPLTQEQL 258 (281)
T ss_dssp CCSTTBCTTTCSBCSSE----EECSSCCEEETTHHHHHHHHT----C---SSCTT--TCCCCCGGGC
T ss_pred CCcccCCcCcCCHhcCC----eECCCCCEECHHHHHHHHHHC----C---CCCcC--CCCCCchhcC
Confidence 34578999999999776 578899999999999999652 1 23999 9998876543
No 62
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.99 E-value=4.2e-06 Score=56.18 Aligned_cols=55 Identities=18% Similarity=0.372 Sum_probs=40.8
Q ss_pred CCccccccccccccccc--------------cccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCccc
Q 035729 21 GSSFTCEICIEPMAANK--------------KFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDPFS 85 (208)
Q Consensus 21 ~~~~~C~iC~~~~~~~~--------------~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~ 85 (208)
....+|.||++.+...- ..+..++|+|.|+..||..|+.. ...||. |+..+....
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--------~~~CP~--Cr~~~~~~~ 103 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--------RQVCPL--DNREWEFQK 103 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT--------CSBCSS--SCSBCCEEE
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc--------CCcCcC--CCCcceeec
Confidence 45578999999986431 11245799999999999999753 248999 998765543
No 63
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.97 E-value=7.8e-06 Score=59.95 Aligned_cols=54 Identities=13% Similarity=-0.007 Sum_probs=43.6
Q ss_pred CCCccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCcccc
Q 035729 20 NGSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDPFSC 86 (208)
Q Consensus 20 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i 86 (208)
....+.|+||++.+..+ +.++|||+||+.|+..|+... + ..||. |+..++..++
T Consensus 103 ip~~f~CPI~~elm~DP----V~~~~Ghtfer~~I~~~l~~~----~---~tcP~--t~~~l~~~~L 156 (179)
T 2f42_A 103 IPDYLCGKISFELMREP----CITPSGITYDRKDIEEHLQRV----G---HFDPV--TRSPLTQDQL 156 (179)
T ss_dssp CCGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHT----C---SBCTT--TCCBCCGGGC
T ss_pred CcHhhcccCccccCCCC----eECCCCCEECHHHHHHHHHhC----C---CCCCC--CcCCCChhhC
Confidence 34579999999999776 578999999999999999752 1 16999 9998876543
No 64
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.89 E-value=6.7e-06 Score=67.23 Aligned_cols=52 Identities=21% Similarity=0.510 Sum_probs=41.3
Q ss_pred CccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCcccc
Q 035729 22 SSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDPFSC 86 (208)
Q Consensus 22 ~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i 86 (208)
...+|+||++.+..+ +.++|||.||..|+..|+.. ....||. |+..+....+
T Consensus 331 ~~~~C~ICle~~~~p----v~lpCGH~FC~~Ci~~wl~~-------~~~~CP~--CR~~i~~~~~ 382 (389)
T 2y1n_A 331 TFQLCKICAENDKDV----KIEPCGHLMCTSCLTSWQES-------EGQGCPF--CRCEIKGTEP 382 (389)
T ss_dssp SSSBCTTTSSSBCCE----EEETTCCEECHHHHHHHHHH-------TCSBCTT--TCCBCCEEEE
T ss_pred CCCCCCccCcCCCCe----EEeCCCChhhHHHHHHHHhc-------CCCCCCC--CCCccCCcee
Confidence 347999999998554 47899999999999998863 1358999 9998776544
No 65
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.85 E-value=3.4e-06 Score=51.27 Aligned_cols=49 Identities=20% Similarity=0.402 Sum_probs=36.4
Q ss_pred CccccccccccccccccccccCCCCCh-hHHHHHHHHHHHHhhcCCCccccCCccccCCCCC
Q 035729 22 SSFTCEICIEPMAANKKFKNKNLCTHP-FCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLD 82 (208)
Q Consensus 22 ~~~~C~iC~~~~~~~~~~~~~~~C~H~-~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 82 (208)
...+|.||++..... .+..++|||. ||.+|+.++... ...||. |+..+.
T Consensus 7 ~~~~C~IC~~~~~~~--~~~~~pCgH~~~C~~C~~~~~~~--------~~~CPi--CR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNG--CIVHGKTGHLMACFTCAKKLKKR--------NKPCPV--CRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCE--EEEETTEEEEEECHHHHHHHHHT--------TCCCTT--TCCCCC
T ss_pred CcCCCCcCCCCCCCE--EEECCCCCChhhHHHHHHHHHHc--------CCcCCC--cCcchh
Confidence 456899999988544 1112499999 899999988742 137999 998774
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.85 E-value=3.9e-07 Score=58.00 Aligned_cols=44 Identities=25% Similarity=0.706 Sum_probs=35.2
Q ss_pred CccccccccccccccccccccCCCCCh-hHHHHHHHHHHHHhhcCCCccccCCccccCCCCCc
Q 035729 22 SSFTCEICIEPMAANKKFKNKNLCTHP-FCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDP 83 (208)
Q Consensus 22 ~~~~C~iC~~~~~~~~~~~~~~~C~H~-~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 83 (208)
....|.||++..... ++++|||. ||..|+..+ ..||. |+..+..
T Consensus 17 ~~~~C~IC~~~~~~~----v~~pCgH~~~C~~C~~~~------------~~CP~--Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEINS----TFCPCGHTVCCESCAAQL------------QSCPV--CRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBCCE----EEETTCBCCBCHHHHTTC------------SBCTT--TCCBCCE
T ss_pred CCCEeEEeCcccCcE----EEECCCCHHHHHHHHHhc------------CcCCC--CCchhhC
Confidence 456899999988543 47899999 999998743 29999 9997755
No 67
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.83 E-value=3.1e-06 Score=51.33 Aligned_cols=50 Identities=18% Similarity=0.425 Sum_probs=37.1
Q ss_pred CCccccccccccccccccccccCCCCCh-hHHHHHHHHHHHHhhcCCCccccCCccccCCCCC
Q 035729 21 GSSFTCEICIEPMAANKKFKNKNLCTHP-FCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLD 82 (208)
Q Consensus 21 ~~~~~C~iC~~~~~~~~~~~~~~~C~H~-~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 82 (208)
....+|.||++...... +...+|||. ||..|+.++... .-.||. |+..+.
T Consensus 5 ~~~~~C~IC~~~~~~~~--~~~~pCgH~~~C~~C~~~~~~~--------~~~CPi--CR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGN--IIHGRTGHLVTCFHCARRLKKA--------GASCPI--CKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCEE--EEETTEEEEEECHHHHHHHHHT--------TCBCTT--TCCBCC
T ss_pred CcCCCCcccCCcCCCeE--EEecCCCCHhHHHHHHHHHHHh--------CCcCCC--cCchhh
Confidence 34568999999875431 224599998 999999987642 148999 998774
No 68
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.72 E-value=5.7e-06 Score=56.45 Aligned_cols=54 Identities=19% Similarity=0.376 Sum_probs=1.4
Q ss_pred CCcccccccccccccc--------------ccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCcc
Q 035729 21 GSSFTCEICIEPMAAN--------------KKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDPF 84 (208)
Q Consensus 21 ~~~~~C~iC~~~~~~~--------------~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~ 84 (208)
.....|.||++++... +..+..++|+|.|+..|+..|+... ..||. |+..+...
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~--------~~CP~--Cr~~~~~~ 113 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR--------QVCPL--DNREWEFQ 113 (117)
T ss_dssp CCC---------------------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC--------CcCCC--CCCeeeee
Confidence 3456999999999642 1122346899999999999998652 37998 98876543
No 69
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.62 E-value=2.6e-05 Score=48.65 Aligned_cols=54 Identities=22% Similarity=0.465 Sum_probs=41.3
Q ss_pred cCCCccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCc
Q 035729 19 GNGSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDP 83 (208)
Q Consensus 19 ~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 83 (208)
......+|.||++.+..... -..|+|.|...||.+|+..+- .-.||. |+..+..
T Consensus 11 y~~~i~~C~IC~~~i~~g~~---C~~C~h~fH~~Ci~kWl~~~~------~~~CP~--Cr~~w~~ 64 (74)
T 2ct0_A 11 YPDAVKICNICHSLLIQGQS---CETCGIRMHLPCVAKYFQSNA------EPRCPH--CNDYWPH 64 (74)
T ss_dssp CSSSSCBCSSSCCBCSSSEE---CSSSCCEECHHHHHHHSTTCS------SCCCTT--TCSCCCS
T ss_pred ccCCCCcCcchhhHcccCCc---cCCCCchhhHHHHHHHHHhcC------CCCCCC--CcCcCCC
Confidence 34556799999999975532 339999999999999996421 258999 9987653
No 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.53 E-value=5.8e-05 Score=60.38 Aligned_cols=63 Identities=14% Similarity=0.467 Sum_probs=44.5
Q ss_pred cCCCcccccccccccccccccc----ccCCCCChhHHHHHHHHHHHHhhcC---CCccccCCccccCCCCCc
Q 035729 19 GNGSSFTCEICIEPMAANKKFK----NKNLCTHPFCQECIAKYIQVMVQDN---NTAKIECPGLNCQKNLDP 83 (208)
Q Consensus 19 ~~~~~~~C~iC~~~~~~~~~~~----~~~~C~H~~C~~Cl~~~~~~~i~~~---~~~~i~CP~~~C~~~l~~ 83 (208)
.+....+|.||++.+......+ ....|+|.|...||.+|+...-... +...=.||. |+..++-
T Consensus 304 ~ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPy--Cr~pIs~ 373 (381)
T 3k1l_B 304 EDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPF--CKAKLST 373 (381)
T ss_dssp CCCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTT--TCCEEEG
T ss_pred cccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCC--CCCcCCc
Confidence 4456889999999987632221 1347999999999999998764321 122248998 9997753
No 71
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.02 E-value=6.5e-05 Score=60.81 Aligned_cols=44 Identities=27% Similarity=0.646 Sum_probs=35.8
Q ss_pred CccccccccccccccccccccCCCCCh-hHHHHHHHHHHHHhhcCCCccccCCccccCCCCCc
Q 035729 22 SSFTCEICIEPMAANKKFKNKNLCTHP-FCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDP 83 (208)
Q Consensus 22 ~~~~C~iC~~~~~~~~~~~~~~~C~H~-~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 83 (208)
+...|+||++.+..+ +.++|||. ||..|+..+ ..||. |+..+..
T Consensus 294 ~~~~C~IC~~~~~~~----v~lpCgH~~fC~~C~~~~------------~~CP~--CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVSV----VFIPCGHLVVCQECAPSL------------RKCPI--CRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCCE----EEETTCCEEECTTTGGGC------------SBCTT--TCCBCCE
T ss_pred CCCCCCccCCcCCce----EEcCCCChhHhHHHHhcC------------CcCCC--CCCCccC
Confidence 457999999998654 46799999 999998754 48999 9987753
No 72
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=96.98 E-value=0.0004 Score=41.52 Aligned_cols=53 Identities=11% Similarity=0.089 Sum_probs=41.4
Q ss_pred ccccccccccccccccccccC-CCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCcccccCC
Q 035729 23 SFTCEICIEPMAANKKFKNKN-LCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDPFSCKPM 89 (208)
Q Consensus 23 ~~~C~iC~~~~~~~~~~~~~~-~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~~ 89 (208)
.+.|+|+++.+.++ +.. ++||.|++.++.+|+... . .||. .+..|+.+++..+
T Consensus 3 ~~~CpIs~~~m~dP----V~~~~sG~~yer~~I~~~l~~~--~------~cP~--t~~~L~~~~Lip~ 56 (61)
T 2bay_A 3 HMLCAISGKVPRRP----VLSPKSRTIFEKSLLEQYVKDT--G------NDPI--TNEPLSIEEIVEI 56 (61)
T ss_dssp -CCCTTTCSCCSSE----EEETTTTEEEEHHHHHHHHHHH--S------BCTT--TCCBCCGGGCEEC
T ss_pred eEEecCCCCCCCCC----EEeCCCCcEEcHHHHHHHHHhC--C------CCcC--CcCCCChhhcEEC
Confidence 47899999999765 455 899999999999999752 1 4898 8888877666543
No 73
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.54 E-value=0.0013 Score=39.06 Aligned_cols=39 Identities=28% Similarity=0.750 Sum_probs=33.6
Q ss_pred CCcccCcccccccchhcchhhcCCCCcccCcc--ccchhccccCcCc
Q 035729 110 YERSYCPNRNCMALVVNECERKGRMKKAQCPN--CKHWFCFRCKLKW 154 (208)
Q Consensus 110 ~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~--C~~~~C~~C~~~~ 154 (208)
.+...|| .|+..+....+ ...+.|.. |+..||+.|..+|
T Consensus 4 ~~~k~CP--~C~~~Iek~~G----CnhmtC~~~~C~~~FCw~C~~~~ 44 (60)
T 1wd2_A 4 ANTKECP--KCHVTIEKDGG----CNHMVCRNQNCKAEFCWVCLGPW 44 (60)
T ss_dssp CCCCCCT--TTCCCCSSCCS----CCSSSCCSSGGGSCCSSSSCSCS
T ss_pred ccceECc--CCCCeeEeCCC----CCcEEECCCCcCCEEeeCcCCCc
Confidence 3467899 79999988766 78999987 9999999999986
No 74
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.46 E-value=0.0036 Score=37.14 Aligned_cols=50 Identities=16% Similarity=0.409 Sum_probs=36.4
Q ss_pred CCccccccccccccccccccccCCCC--C---hhHHHHHHHHHHHHhhcCCCccccCCccccCCCCC
Q 035729 21 GSSFTCEICIEPMAANKKFKNKNLCT--H---PFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLD 82 (208)
Q Consensus 21 ~~~~~C~iC~~~~~~~~~~~~~~~C~--H---~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 82 (208)
.+...|.||+++... .+ ..+|. + .|...||.+|+..+- ...||. |+..+.
T Consensus 4 ~~~~~CrIC~~~~~~--~l--~~PC~C~gs~~~~H~~Cl~~W~~~~~------~~~C~~--C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGN--ER--FRACGCTGELENVHRSCLSTWLTISR------NTACQI--CGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSC--CC--CCSCCCSSGGGSCCHHHHHHHHHHHT------CSBCTT--TCCBCC
T ss_pred CCCCEeEEeecCCCC--ce--ecCcCCCCchhhhHHHHHHHHHHhCC------CCccCC--CCCeee
Confidence 345689999998532 23 46754 4 899999999997642 358999 988664
No 75
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=95.52 E-value=0.0048 Score=40.16 Aligned_cols=46 Identities=26% Similarity=0.644 Sum_probs=32.6
Q ss_pred ccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCC
Q 035729 25 TCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLD 82 (208)
Q Consensus 25 ~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 82 (208)
-|.+|--++.. +....+|.|+||.+|...+..... -.||. |...+.
T Consensus 3 fC~~C~~Pi~i---ygRmIPCkHvFCydCa~~~~~~~~-------k~Cp~--C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKV---YGRMIPCKHVFCYDCAILHEKKGD-------KMCPG--CSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSE---EEEEETTCCEEEHHHHHHHHHTTC-------CBCTT--TCCBCS
T ss_pred ecCccCCCeEE---EeeeccccccHHHHHHHHHHhccC-------CCCcC--cCCeee
Confidence 47778766632 335789999999999988875432 26777 777554
No 76
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=94.76 E-value=0.023 Score=35.20 Aligned_cols=48 Identities=27% Similarity=0.657 Sum_probs=36.7
Q ss_pred CCCccccccccccccccccccccCCC----CChhHHHHHHHHHHHHhhcCCCccccCCc
Q 035729 20 NGSSFTCEICIEPMAANKKFKNKNLC----THPFCQECIAKYIQVMVQDNNTAKIECPG 74 (208)
Q Consensus 20 ~~~~~~C~iC~~~~~~~~~~~~~~~C----~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~ 74 (208)
+...+.|.+|.+.+.+. . +.+| .|.||-.|-+.+|+.+-.. ..+.||.
T Consensus 12 ~~a~l~CtlC~erLEdt--H--FVQCPsv~~HkFCFpCsr~sIk~q~~~---~EvyCPS 63 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDT--H--FVQCPSVPSHKFCFPCSRESIKAQGAT---GEVYCPS 63 (93)
T ss_dssp SCCSCCCSSSCSCCSST--T--SEECSSCSSCEECHHHHHHHHHHHHSS---SCCCCTT
T ss_pred CCCeeEeecchhhhccC--c--eeeCCCccCCeeeccccHHHHHhcCCC---CcEECCC
Confidence 45678999999999643 3 3345 7999999999999987543 5577775
No 77
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.26 E-value=0.018 Score=37.65 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=23.1
Q ss_pred CCcccCccccchhccccCc-CcCCCCCC
Q 035729 134 MKKAQCPNCKHWFCFRCKL-KWHGGYHC 160 (208)
Q Consensus 134 ~~~~~C~~C~~~~C~~C~~-~~H~~~~C 160 (208)
...++|..|+..+|..|.. ..|.+|.-
T Consensus 69 ~l~~fC~~~~~~iC~~C~~~~~H~~H~~ 96 (101)
T 2jun_A 69 KVNMYCVTDDQLICALCKLVGRHRDHQV 96 (101)
T ss_dssp CCCEEETTTTEEECHHHHHHTTTSSSCB
T ss_pred cceEECCCCCCccchhcCCCCCcCCCCe
Confidence 5788999999999999987 78888753
No 78
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=93.28 E-value=0.022 Score=36.48 Aligned_cols=67 Identities=22% Similarity=0.489 Sum_probs=44.1
Q ss_pred CCCCCCCCCCCCCCcc-----cccCCCccccccccccccccccccccCCC-CChhHHHHHHHHHHHHhhcCCCccccCCc
Q 035729 1 MGNSLQRPTENRGRQE-----EEGNGSSFTCEICIEPMAANKKFKNKNLC-THPFCQECIAKYIQVMVQDNNTAKIECPG 74 (208)
Q Consensus 1 ~~~~~~~~~~~~~~~~-----~~~~~~~~~C~iC~~~~~~~~~~~~~~~C-~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~ 74 (208)
||+...++........ ...-.+.+.|-.|+-.... +..| .|..|..||..++.. .-.||.
T Consensus 1 MG~~~Sk~~~~~~~~ra~~~~d~s~~G~~nCKsCWf~~k~------LV~C~dHYLCl~CLtlmL~~--------SdrCpI 66 (99)
T 2ko5_A 1 MGNKQAKAPESKDSPRASLIPDATHLGPQFCKSCWFENKG------LVECNNHYLCLNCLTLLLSV--------SNRCPI 66 (99)
T ss_dssp CCCSSSSCCCCCCSCCCSCSSSCCCSCCCCCCSSCSCCSS------EEECSSCEEEHHHHHHTCSS--------SSEETT
T ss_pred CCCcccCCCCCCCCCcceecCCccccCcccChhhccccCC------eeeecchhhHHHHHHHHHhh--------ccCCcc
Confidence 8887766654432222 2333456789999977642 3345 899999999886632 237888
Q ss_pred cccCCCCCc
Q 035729 75 LNCQKNLDP 83 (208)
Q Consensus 75 ~~C~~~l~~ 83 (208)
|+..|+-
T Consensus 67 --C~~pLPt 73 (99)
T 2ko5_A 67 --CKMPLPT 73 (99)
T ss_dssp --TTEECCC
T ss_pred --cCCcCCc
Confidence 9987754
No 79
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=91.98 E-value=0.066 Score=40.88 Aligned_cols=53 Identities=25% Similarity=0.512 Sum_probs=40.7
Q ss_pred CCccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCcc
Q 035729 21 GSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDPF 84 (208)
Q Consensus 21 ~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~ 84 (208)
.....|.||.+-+..... -..|+|.|...|+..|+.. .....||. |+..++.+
T Consensus 178 ~~i~~C~iC~~iv~~g~~---C~~C~~~~H~~C~~~~~~~------~~~~~CP~--C~~~W~~~ 230 (238)
T 3nw0_A 178 DAVKICNICHSLLIQGQS---CETCGIRMHLPCVAKYFQS------NAEPRCPH--CNDYWPHE 230 (238)
T ss_dssp TTCCBCTTTCSBCSSCEE---CSSSCCEECHHHHHHHTTT------CSSCBCTT--TCCBCCSC
T ss_pred CCCCcCcchhhHHhCCcc---cCccChHHHHHHHHHHHHh------CCCCCCCC--CCCCCCCC
Confidence 347899999999976532 2349999999999999853 23468998 99877655
No 80
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=88.47 E-value=0.23 Score=34.26 Aligned_cols=37 Identities=11% Similarity=0.302 Sum_probs=26.7
Q ss_pred cCCCcccCcccccccchhcchhhcCCCCcccCccccchh
Q 035729 108 RGYERSYCPNRNCMALVVNECERKGRMKKAQCPNCKHWF 146 (208)
Q Consensus 108 ~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 146 (208)
+.....+|| .|++++.+....+.....+.|..|++..
T Consensus 20 ~~~~~~FCP--eCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 20 HMTTFRFCR--DCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp --CCCCBCT--TTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred cccCCeeCC--CCCCEeeECccCCCceeEEECCCCCCcE
Confidence 345689999 8999998775433335689999898854
No 81
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=81.09 E-value=0.46 Score=26.74 Aligned_cols=30 Identities=20% Similarity=0.400 Sum_probs=20.5
Q ss_pred CcccCcccccccchhcchhhcCCCCcccCccccchh
Q 035729 111 ERSYCPNRNCMALVVNECERKGRMKKAQCPNCKHWF 146 (208)
Q Consensus 111 ~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 146 (208)
.+.+|| .|+..+...+. ..+..|+.|+..+
T Consensus 18 ~~k~CP--~CG~~~fm~~~----~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 18 KNKFCP--RCGPGVFMADH----GDRWACGKCGYTE 47 (50)
T ss_dssp SSEECS--SSCSSCEEEEC----SSEEECSSSCCEE
T ss_pred ecccCC--CCCCceEEecC----CCeEECCCCCCEE
Confidence 367899 69884443333 4688999998753
No 82
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=80.88 E-value=0.94 Score=28.39 Aligned_cols=38 Identities=13% Similarity=0.333 Sum_probs=26.7
Q ss_pred cCCCccccccccccccccccccccCCCCChhHHHHHHH
Q 035729 19 GNGSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAK 56 (208)
Q Consensus 19 ~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~ 56 (208)
.+.+...|.+|...|.....--.-..||++||..|...
T Consensus 17 pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 17 EDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred cCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 34456789999999865432223457999999999654
No 83
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=76.44 E-value=1 Score=29.99 Aligned_cols=33 Identities=21% Similarity=0.505 Sum_probs=24.8
Q ss_pred cccCcccccccchhcchhhcCCCCcccCccccchh
Q 035729 112 RSYCPNRNCMALVVNECERKGRMKKAQCPNCKHWF 146 (208)
Q Consensus 112 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 146 (208)
..+|| .|++++.+.....+....+.|..|++.+
T Consensus 4 m~FCp--~Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 4 FQYCI--ECNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCS--SSCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred ceeCc--CCCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 56899 8999998765433335689999998866
No 84
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=74.14 E-value=0.68 Score=27.02 Aligned_cols=39 Identities=23% Similarity=0.715 Sum_probs=27.8
Q ss_pred ccCcccccccchhcchhhcCCCCcccCccccchhccccCcCcCCCC-CC
Q 035729 113 SYCPNRNCMALVVNECERKGRMKKAQCPNCKHWFCFRCKLKWHGGY-HC 160 (208)
Q Consensus 113 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~~~-~C 160 (208)
..|- +|...+.. ...+.|+.|++.||..|..-.|..+ .|
T Consensus 16 ~~C~--~C~~~~~~-------~~~y~C~~C~~~FC~dCD~fiHe~Lh~C 55 (59)
T 1z60_A 16 RFCY--GCQGELKD-------QHVYVCAVCQNVFCVDCDVFVHDSLHSC 55 (59)
T ss_dssp CEET--TTTEECTT-------SEEECCTTTTCCBCHHHHHTTTTTSCSS
T ss_pred Cccc--ccCcccCC-------CccEECCccCcCcccchhHHHHhhccCC
Confidence 3465 67665531 2247899999999999999888764 44
No 85
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=72.96 E-value=1.1 Score=30.26 Aligned_cols=34 Identities=12% Similarity=0.376 Sum_probs=24.9
Q ss_pred CcccCcccccccchhcchhhcCCCCcccCccccchh
Q 035729 111 ERSYCPNRNCMALVVNECERKGRMKKAQCPNCKHWF 146 (208)
Q Consensus 111 ~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 146 (208)
...+|| .|++++.+..........+.|..|++..
T Consensus 3 ~~~FCp--~CgnlL~~~~~~~~~~~~~~C~~C~y~~ 36 (122)
T 1twf_I 3 TFRFCR--DCNNMLYPREDKENNRLLFECRTCSYVE 36 (122)
T ss_dssp CCCBCS--SSCCBCEEEEETTTTEEEEECSSSSCEE
T ss_pred CCCccc--ccCccCcccccCcCCCCEEECCcCCCee
Confidence 467899 8999998664322235689999998865
No 86
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=71.98 E-value=12 Score=23.62 Aligned_cols=52 Identities=25% Similarity=0.618 Sum_probs=35.9
Q ss_pred Cccccccccccccc---cccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCC
Q 035729 22 SSFTCEICIEPMAA---NKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLD 82 (208)
Q Consensus 22 ~~~~C~iC~~~~~~---~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 82 (208)
....|.||-+++-. .+.|+.-..|+-.+|+.|+.--. ++++ -.||. |+..+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYEr----keG~---q~Cpq--CktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYER----REGT---QNCPQ--CKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHH----HTSC---SSCTT--TCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHH----hccC---ccccc--cCCccc
Confidence 45799999999633 23454455688899999987543 2333 48988 887664
No 87
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=71.65 E-value=1.3 Score=31.19 Aligned_cols=33 Identities=24% Similarity=0.440 Sum_probs=25.7
Q ss_pred cccCcccccccchhcchhhcCCCCcccCccccchhcc
Q 035729 112 RSYCPNRNCMALVVNECERKGRMKKAQCPNCKHWFCF 148 (208)
Q Consensus 112 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 148 (208)
...||++.|+..++.... ..+..|-.|++.+++
T Consensus 118 ~~~c~~~~cg~g~fma~h----~~r~~cgkc~~t~~~ 150 (152)
T 3u5c_f 118 RRECSNPTCGAGVFLANH----KDRLYCGKCHSVYKV 150 (152)
T ss_dssp SCBCCSTTSCSSSBEEEC----SSCEEESSSSSCCEE
T ss_pred cCcCCCccCCCceEeccc----CCCcccCCCceEEEe
Confidence 468998889986665544 468999999998876
No 88
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=71.54 E-value=3.1 Score=21.84 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=22.6
Q ss_pred CCcccCccccchhccccCc-CcCCCCC
Q 035729 134 MKKAQCPNCKHWFCFRCKL-KWHGGYH 159 (208)
Q Consensus 134 ~~~~~C~~C~~~~C~~C~~-~~H~~~~ 159 (208)
...++|..++..+|..|.. ..|.+++
T Consensus 12 ~l~lfC~~d~~~iC~~C~~~~~H~~H~ 38 (42)
T 1fre_A 12 RLKLYCKDDGTLSCVICRDSLKHASHN 38 (42)
T ss_dssp SCCCCCCSSSSSSCCTTSSCSSCTTCC
T ss_pred eeeEEeCCCCeEEeccCCCCCCCCCCc
Confidence 5788999999999999998 6788774
No 89
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=69.87 E-value=1.6 Score=25.02 Aligned_cols=29 Identities=21% Similarity=0.440 Sum_probs=21.2
Q ss_pred cccCcccccccchhcchhhcCCCCcccCccccchh
Q 035729 112 RSYCPNRNCMALVVNECERKGRMKKAQCPNCKHWF 146 (208)
Q Consensus 112 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 146 (208)
...|| .|+..+..... ..++.|..|++..
T Consensus 18 ~~fCP--kCG~~~~ma~~----~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 18 HRFCP--RCGPGVFLAEH----ADRYSCGRCGYTE 46 (55)
T ss_dssp SCCCT--TTTTTCCCEEC----SSEEECTTTCCCE
T ss_pred cccCc--CCCCceeEecc----CCEEECCCCCCEE
Confidence 57899 69986665433 4688999998874
No 90
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=67.05 E-value=5.3 Score=25.20 Aligned_cols=59 Identities=22% Similarity=0.411 Sum_probs=39.7
Q ss_pred cccCcccccccchhcchhhcCCCCcccCccccchhccccCcCcCCCCCChhhhcccccchHHHHHHHHhCCcccCCCCCc
Q 035729 112 RSYCPNRNCMALVVNECERKGRMKKAQCPNCKHWFCFRCKLKWHGGYHCEESGNLRDRNDIAFGQLAERMKWARCPGCGH 191 (208)
Q Consensus 112 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~~~~~k~CP~C~~ 191 (208)
...|. -|+--+...... ...+-|..|.+-.|..|.. +......+.||.|++
T Consensus 16 ~qiCq--iCGD~VG~~~~G---e~FVAC~eC~FPvCrpCyE------------------------YErkeG~q~CpqCkt 66 (93)
T 1weo_A 16 GQFCE--ICGDQIGLTVEG---DLFVACNECGFPACRPCYE------------------------YERREGTQNCPQCKT 66 (93)
T ss_dssp SCBCS--SSCCBCCBCSSS---SBCCSCSSSCCCCCHHHHH------------------------HHHHTSCSSCTTTCC
T ss_pred CCccc--cccCccccCCCC---CEEEeeeccCChhhHHHHH------------------------HHHhccCccccccCC
Confidence 34565 465554433222 4788899999888886632 234568899999999
Q ss_pred eeEecCCC
Q 035729 192 CVQRKNGC 199 (208)
Q Consensus 192 ~i~k~~GC 199 (208)
+..+.-|.
T Consensus 67 rYkr~kgs 74 (93)
T 1weo_A 67 RYKRLRGS 74 (93)
T ss_dssp CCCCCTTC
T ss_pred ccccccCC
Confidence 98876554
No 91
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=66.72 E-value=2.4 Score=27.23 Aligned_cols=17 Identities=29% Similarity=0.905 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHhhc
Q 035729 48 PFCQECIAKYIQVMVQD 64 (208)
Q Consensus 48 ~~C~~Cl~~~~~~~i~~ 64 (208)
-||++||.+|+.....+
T Consensus 41 GFCRNCLskWy~~aA~~ 57 (104)
T 3fyb_A 41 DFCRNCLAKWLMEAATE 57 (104)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 39999999999887655
No 92
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=66.57 E-value=2.5 Score=27.25 Aligned_cols=17 Identities=18% Similarity=0.770 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHHhhc
Q 035729 48 PFCQECIAKYIQVMVQD 64 (208)
Q Consensus 48 ~~C~~Cl~~~~~~~i~~ 64 (208)
-||++||.+|+.....+
T Consensus 42 GFCRNCLskWy~~aA~e 58 (105)
T 2o35_A 42 GFCRNCLSNWYREAAEA 58 (105)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 39999999999887765
No 93
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=64.50 E-value=2.5 Score=26.79 Aligned_cols=36 Identities=19% Similarity=0.473 Sum_probs=25.2
Q ss_pred CCccccccccccccccccccccCCCCChhHHHHHHH
Q 035729 21 GSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAK 56 (208)
Q Consensus 21 ~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~ 56 (208)
.....|.+|...|.....-..-..||++||..|...
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred ccCCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 345679999998865432223557999999999553
No 94
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=62.85 E-value=1.5 Score=24.17 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=23.5
Q ss_pred CCcccCccccchhccccCcCcCCCCCC
Q 035729 134 MKKAQCPNCKHWFCFRCKLKWHGGYHC 160 (208)
Q Consensus 134 ~~~~~C~~C~~~~C~~C~~~~H~~~~C 160 (208)
...++|..|+..+|..|....|.++.-
T Consensus 16 ~l~lfC~~~~~~iC~~C~~~~H~~H~~ 42 (50)
T 2yvr_A 16 PLVLFCESCDTLTCRDCQLNAHKDHQY 42 (50)
T ss_dssp BCCEEETTTTEEECHHHHHTTTTTCCE
T ss_pred CEEEEeCCCCEEEecccCCCcCCCCce
Confidence 578999999999999998878888754
No 95
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=61.98 E-value=3.2 Score=22.98 Aligned_cols=29 Identities=21% Similarity=0.565 Sum_probs=17.6
Q ss_pred cccCccccccc-chhcchhhcCCCCcccCccccchh
Q 035729 112 RSYCPNRNCMA-LVVNECERKGRMKKAQCPNCKHWF 146 (208)
Q Consensus 112 ~~~Cp~~~C~~-~~~~~~~~~~~~~~~~C~~C~~~~ 146 (208)
...|| .|+. -+..+.. ...+.|..||..+
T Consensus 5 ~~~CP--~C~~~~l~~d~~----~gelvC~~CG~v~ 34 (50)
T 1pft_A 5 QKVCP--ACESAELIYDPE----RGEIVCAKCGYVI 34 (50)
T ss_dssp CCSCT--TTSCCCEEEETT----TTEEEESSSCCBC
T ss_pred cEeCc--CCCCcceEEcCC----CCeEECcccCCcc
Confidence 45688 6876 4433322 4567787776654
No 96
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=61.19 E-value=2.2 Score=25.28 Aligned_cols=35 Identities=20% Similarity=0.375 Sum_probs=26.7
Q ss_pred CCCccccccccccccccccccccCCC-CChhHHHHHHHHHH
Q 035729 20 NGSSFTCEICIEPMAANKKFKNKNLC-THPFCQECIAKYIQ 59 (208)
Q Consensus 20 ~~~~~~C~iC~~~~~~~~~~~~~~~C-~H~~C~~Cl~~~~~ 59 (208)
+.+..-|.||.++-. . .-..| +..||..||+..-.
T Consensus 5 ~ee~pWC~ICneDAt-l----rC~gCdgDLYC~rC~rE~H~ 40 (67)
T 2d8v_A 5 SSGLPWCCICNEDAT-L----RCAGCDGDLYCARCFREGHD 40 (67)
T ss_dssp CCCCSSCTTTCSCCC-E----EETTTTSEEECSSHHHHHTT
T ss_pred CcCCCeeEEeCCCCe-E----EecCCCCceehHHHHHHHcc
Confidence 345678999999852 2 36788 78999999998763
No 97
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=60.50 E-value=4.8 Score=24.92 Aligned_cols=40 Identities=28% Similarity=0.679 Sum_probs=29.3
Q ss_pred hhcCCCcccCcccccccchhcchhhcCCCCcccCccccchhccccCcC
Q 035729 106 YVRGYERSYCPNRNCMALVVNECERKGRMKKAQCPNCKHWFCFRCKLK 153 (208)
Q Consensus 106 ~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~ 153 (208)
++++.+...|. .|+..+... .....|-.||..||..|...
T Consensus 13 W~~d~~~~~C~--~C~~~Fs~~------~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 13 WLKDDEATHCR--QCEKEFSIS------RRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp --CCCCCCBCT--TTCCBCBTT------BCCEECTTTCCEECSGGGCE
T ss_pred cccCccCCccc--CcCCcccCc------cccccCCCCCCEEChHHhCC
Confidence 55666677888 688765432 46789999999999999763
No 98
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=60.33 E-value=6.8 Score=26.44 Aligned_cols=40 Identities=23% Similarity=0.594 Sum_probs=28.8
Q ss_pred hhcCCCcccCcccccccchhcchhhcCCCCcccCccccchhccccCcC
Q 035729 106 YVRGYERSYCPNRNCMALVVNECERKGRMKKAQCPNCKHWFCFRCKLK 153 (208)
Q Consensus 106 ~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~ 153 (208)
++++.....|. .|+..+... .....|-.||..||..|...
T Consensus 63 W~~d~~~~~C~--~C~~~Fs~~------~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 63 WAEDNEVQNCM--ACGKGFSVT------VRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCCGGGCCBCT--TTCCBCCSS------SCCEECTTTCCEECGGGSCE
T ss_pred cccCCCCCCCc--CcCCccccc------cccccCCCCCeEEChHHhCC
Confidence 34444556787 687765432 46789999999999999763
No 99
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.40 E-value=5.6 Score=24.70 Aligned_cols=39 Identities=28% Similarity=0.537 Sum_probs=28.7
Q ss_pred hhcCCCcccCcccccccchhcchhhcCCCCcccCccccchhccccCc
Q 035729 106 YVRGYERSYCPNRNCMALVVNECERKGRMKKAQCPNCKHWFCFRCKL 152 (208)
Q Consensus 106 ~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~ 152 (208)
++++.....|. .|+..+... ..+..|-.||..||..|..
T Consensus 8 W~pd~~~~~C~--~C~~~F~~~------~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 8 RYPTNNFGNCT--GCSATFSVL------KKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp SCSCCCCSSCS--SSCCCCCSS------SCCEECSSSCCEECTTTSC
T ss_pred cccCCCCCcCc--CcCCccccc------hhhhhhcCCCcEEChhhcC
Confidence 34455567788 687765332 4678999999999999975
No 100
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=54.50 E-value=2.8 Score=28.40 Aligned_cols=35 Identities=26% Similarity=0.547 Sum_probs=24.6
Q ss_pred CccccccccccccccccccccCCCCChhHHHHHHH
Q 035729 22 SSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAK 56 (208)
Q Consensus 22 ~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~ 56 (208)
....|.+|...|.....-..--.||++||..|...
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 34589999999864432223457999999999553
No 101
>2hu9_A MERP, mercuric transport protein periplasmic component; copper chaperone, iron-sufur protein, COPZ, ATX1, ATOX1, metal transport; 1.78A {Archaeoglobus fulgidus}
Probab=54.40 E-value=1.5 Score=29.92 Aligned_cols=44 Identities=18% Similarity=0.509 Sum_probs=28.4
Q ss_pred ccCCccccCC---CCCcccccCCCChhHHHHHHHHHHhhhhcCCCcccCcccccccchh
Q 035729 70 IECPGLNCQK---NLDPFSCKPMIPSSLFSKWCDLLCEDYVRGYERSYCPNRNCMALVV 125 (208)
Q Consensus 70 i~CP~~~C~~---~l~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~Cp~~~C~~~~~ 125 (208)
..||. |+. .+...+++.+|.+++++ +...++.+|++++|.-.+.
T Consensus 2 ~~CP~--Cg~~G~~V~~~Tvk~ll~~~~~~----------~~~~~y~~C~~~~C~VvYf 48 (130)
T 2hu9_A 2 MRCPE--CSTEGWRVLPLTVGAHVKEGLWS----------KIKGDFYFCSLESCEVVYF 48 (130)
T ss_dssp CBCTT--TCCBCEEECHHHHHHHBCGGGGG----------GCCSCEEECCCTTCSEEEE
T ss_pred CcCCC--CCCcCcCccHHHHHHHhhHHHhc----------cCCCCEEeECCCCCCEEEE
Confidence 35888 886 34455555555544332 3345789999999986554
No 102
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=53.88 E-value=2.6 Score=25.50 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=20.0
Q ss_pred cccCcccccccchhcchhhcCCCCcccCccccchh
Q 035729 112 RSYCPNRNCMALVVNECERKGRMKKAQCPNCKHWF 146 (208)
Q Consensus 112 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 146 (208)
.+.|| |+.+...+.. .....|+ ||..+
T Consensus 4 vv~C~---C~~~~~~~~~----~kT~~C~-CG~~~ 30 (71)
T 1gh9_A 4 IFRCD---CGRALYSREG----AKTRKCV-CGRTV 30 (71)
T ss_dssp EEEET---TSCCEEEETT----CSEEEET-TTEEE
T ss_pred EEECC---CCCEEEEcCC----CcEEECC-CCCee
Confidence 35676 8888877765 6788887 88765
No 103
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=53.79 E-value=3.3 Score=25.05 Aligned_cols=32 Identities=25% Similarity=0.478 Sum_probs=23.0
Q ss_pred cccccccccccccccccccCCCCChhHHHHHH
Q 035729 24 FTCEICIEPMAANKKFKNKNLCTHPFCQECIA 55 (208)
Q Consensus 24 ~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~ 55 (208)
..|.+|...|........-..||.+||..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 37999999886443222345799999999964
No 104
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=52.72 E-value=2.9 Score=22.81 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=22.0
Q ss_pred CCcccCccccchhccccC-cCcCCCCC
Q 035729 134 MKKAQCPNCKHWFCFRCK-LKWHGGYH 159 (208)
Q Consensus 134 ~~~~~C~~C~~~~C~~C~-~~~H~~~~ 159 (208)
...++|..|+..+|..|. ...|.+++
T Consensus 16 ~l~lfC~~d~~~iC~~C~~~~~H~~H~ 42 (48)
T 3ddt_A 16 KINIYCLTCEVPTCSMCKVFGIHKACE 42 (48)
T ss_dssp BCCEEETTTTEEECHHHHHHSTTTTSC
T ss_pred cccEEcCCCCeeEcccccCCCcCCCCc
Confidence 577999999999999997 45788875
No 105
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=52.28 E-value=3.4 Score=27.76 Aligned_cols=38 Identities=21% Similarity=0.440 Sum_probs=24.8
Q ss_pred CCccccccccccccccccccccCCCCChhHHHHHHHHH
Q 035729 21 GSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYI 58 (208)
Q Consensus 21 ~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~ 58 (208)
.....|..|...|......-.-..||.+||..|....+
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~ 54 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVG 54 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC--
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCCCC
Confidence 34468999999986543222356799999999976544
No 106
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=51.45 E-value=4.7 Score=25.18 Aligned_cols=31 Identities=29% Similarity=0.414 Sum_probs=21.0
Q ss_pred cccCcccccccchhcchhhcCCCCcccCccccchhcc
Q 035729 112 RSYCPNRNCMALVVNECERKGRMKKAQCPNCKHWFCF 148 (208)
Q Consensus 112 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 148 (208)
...|| .|+.-...... ...+.|+.|+..|--
T Consensus 27 ~y~Cp--~CG~~~v~r~a----tGiW~C~~Cg~~~ag 57 (83)
T 1vq8_Z 27 DHACP--NCGEDRVDRQG----TGIWQCSYCDYKFTG 57 (83)
T ss_dssp CEECS--SSCCEEEEEEE----TTEEEETTTCCEEEC
T ss_pred cCcCC--CCCCcceeccC----CCeEECCCCCCEecC
Confidence 56799 68875544433 467888888876654
No 107
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=51.43 E-value=8 Score=29.20 Aligned_cols=57 Identities=28% Similarity=0.551 Sum_probs=30.3
Q ss_pred CCChhHHHHHH------HHHHhhhhcCCCcccCcccccccchhcchhhcCCCCcccCccccchhccc
Q 035729 89 MIPSSLFSKWC------DLLCEDYVRGYERSYCPNRNCMALVVNECERKGRMKKAQCPNCKHWFCFR 149 (208)
Q Consensus 89 ~l~~~~~~~~~------~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~ 149 (208)
.++..+.+.|. +.+.|.++. ...+|| .|+..-...-..-.....+.|+.|+..|=++
T Consensus 7 ~f~~~la~~YkS~SQ~aRVLTE~Wv~--~n~yCP--nCG~~~l~~f~nN~PVaDF~C~~C~EeyELK 69 (257)
T 4esj_A 7 HFNLELVETYKSNSQKARILTEDWVY--RQSYCP--NCGNNPLNHFENNRPVADFYCNHCSEEFELK 69 (257)
T ss_dssp BCCHHHHHHTTTCTTHHHHHHHHHHH--HHCCCT--TTCCSSCEEC----CCCEEECTTTCCEEEEE
T ss_pred ccCHHHHhhccChhheehhhhHHHHH--HCCcCC--CCCChhhhhccCCCcccccccCCcchhheec
Confidence 34555566663 333444442 357899 6888533221111125678898777665443
No 108
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=50.39 E-value=3.8 Score=22.81 Aligned_cols=27 Identities=15% Similarity=0.287 Sum_probs=23.2
Q ss_pred CCcccCccccchhccccCc-CcCCCCCC
Q 035729 134 MKKAQCPNCKHWFCFRCKL-KWHGGYHC 160 (208)
Q Consensus 134 ~~~~~C~~C~~~~C~~C~~-~~H~~~~C 160 (208)
...++|..|+..+|..|.. .-|.+++-
T Consensus 17 ~l~lfC~~d~~~iC~~C~~~~~H~~H~~ 44 (53)
T 2did_A 17 ALSLFCYEDQEAVCLICAISHTHRAHTV 44 (53)
T ss_dssp BCCEEESSSCSEECHHHHTSSTTTTSCE
T ss_pred eeeEEeCCCCeEEeccccCCCCCCCCcE
Confidence 5789999999999999987 68888754
No 109
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=50.13 E-value=3.4 Score=21.08 Aligned_cols=16 Identities=19% Similarity=0.756 Sum_probs=12.7
Q ss_pred Cccccccccccccccc
Q 035729 22 SSFTCEICIEPMAANK 37 (208)
Q Consensus 22 ~~~~C~iC~~~~~~~~ 37 (208)
+.|.|++|+.++...+
T Consensus 4 EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 4 EGFICPQCMKSLGSAD 19 (34)
T ss_dssp EEEECTTTCCEESSHH
T ss_pred cccCCcHHHHHcCCHH
Confidence 4599999999986654
No 110
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=49.77 E-value=5.2 Score=24.76 Aligned_cols=32 Identities=16% Similarity=0.447 Sum_probs=24.4
Q ss_pred ccCcccccccchhcchhhcCCCCcccCccccchhccc
Q 035729 113 SYCPNRNCMALVVNECERKGRMKKAQCPNCKHWFCFR 149 (208)
Q Consensus 113 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~ 149 (208)
+.|| +|.+.-..-... ...+.|..|+...|.-
T Consensus 33 VkCp--~C~n~q~VFShA---~t~V~C~~Cg~~L~~P 64 (81)
T 2xzm_6 33 VKCA--QCQNIQMIFSNA---QSTIICEKCSAILCKP 64 (81)
T ss_dssp EECS--SSCCEEEEETTC---SSCEECSSSCCEEEEE
T ss_pred eECC--CCCCeeEEEecC---ccEEEccCCCCEEeec
Confidence 6899 898876655442 5789999999988763
No 111
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=48.90 E-value=6.4 Score=24.61 Aligned_cols=37 Identities=19% Similarity=0.430 Sum_probs=27.1
Q ss_pred ccCcccccccchhcchhhcCCCCcccCccccchhccccCcCc
Q 035729 113 SYCPNRNCMALVVNECERKGRMKKAQCPNCKHWFCFRCKLKW 154 (208)
Q Consensus 113 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~ 154 (208)
+.|| +|.++-..-... ...+.|..|+...|.-=+...
T Consensus 37 VkCp--~C~~~~~VFShA---~t~V~C~~CgtvL~~PTGGKa 73 (86)
T 3iz6_X 37 VKCQ--GCFNITTVFSHS---QTVVVCPGCQTVLCQPTGGKA 73 (86)
T ss_dssp EECT--TTCCEEEEETTC---SSCCCCSSSCCCCSCCCSSSC
T ss_pred EECC--CCCCeeEEEecC---CcEEEccCCCCEeecCCCCCE
Confidence 7899 899876655442 578999999999887444433
No 112
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=47.85 E-value=4.9 Score=25.33 Aligned_cols=34 Identities=24% Similarity=0.463 Sum_probs=23.6
Q ss_pred CccccccccccccccccccccCCCCChhHHHHHH
Q 035729 22 SSFTCEICIEPMAANKKFKNKNLCTHPFCQECIA 55 (208)
Q Consensus 22 ~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~ 55 (208)
....|.+|...|.....--.-..||.+||..|..
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 41 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLS 41 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSC
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcC
Confidence 3458999999886543222345789999998854
No 113
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=46.58 E-value=3.8 Score=24.52 Aligned_cols=28 Identities=14% Similarity=0.351 Sum_probs=24.1
Q ss_pred CCcccCccccchhccccCcCcCCCCCCh
Q 035729 134 MKKAQCPNCKHWFCFRCKLKWHGGYHCE 161 (208)
Q Consensus 134 ~~~~~C~~C~~~~C~~C~~~~H~~~~C~ 161 (208)
...++|..|+..+|..|....|.+++-.
T Consensus 27 ~l~lfC~~d~~~iC~~C~~~~H~~H~~~ 54 (72)
T 2csv_A 27 TMELFCQTDQTCICYLCMFQEHKNHSTV 54 (72)
T ss_dssp BCCEEESSSCCEECHHHHHTTTSSSCEE
T ss_pred ceEEEeCCCCeEEccccCCCCCCCCCEe
Confidence 5789999999999999998889888543
No 114
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.50 E-value=5.1 Score=22.97 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=23.2
Q ss_pred CCcccCccccchhccccCc-CcCCCCCC
Q 035729 134 MKKAQCPNCKHWFCFRCKL-KWHGGYHC 160 (208)
Q Consensus 134 ~~~~~C~~C~~~~C~~C~~-~~H~~~~C 160 (208)
...++|..++..+|..|.. ..|.+++-
T Consensus 23 ~L~lfC~~d~~~iC~~C~~s~eH~~H~~ 50 (59)
T 2yrg_A 23 KLLLFCQEDGKVICWLCERSQEHRGHHT 50 (59)
T ss_dssp BCCEEETTTCSEECHHHHTSTTTTTCCE
T ss_pred eeeeecCCCCcEEecccCCCCcCCCCcE
Confidence 5788999999999999987 68988753
No 115
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=46.30 E-value=14 Score=21.97 Aligned_cols=24 Identities=8% Similarity=0.087 Sum_probs=18.6
Q ss_pred CcccCCCCCceeEecCCCCceEeC
Q 035729 182 KWARCPGCGHCVQRKNGCHVMQDS 205 (208)
Q Consensus 182 ~~k~CP~C~~~i~k~~GCnhm~C~ 205 (208)
.+-.||.|+.+++...+...++|.
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~ 30 (68)
T 2jr6_A 7 DILVCPVTKGRLEYHQDKQELWSR 30 (68)
T ss_dssp CCCBCSSSCCBCEEETTTTEEEET
T ss_pred hheECCCCCCcCeEeCCCCEEEcC
Confidence 456788888888887777777775
No 116
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=45.98 E-value=5.3 Score=23.89 Aligned_cols=15 Identities=33% Similarity=0.683 Sum_probs=12.4
Q ss_pred CCcccCCCCCceeEe
Q 035729 181 MKWARCPGCGHCVQR 195 (208)
Q Consensus 181 ~~~k~CP~C~~~i~k 195 (208)
...+.||.|+.++.-
T Consensus 7 ~~~~~CP~Cgkp~~W 21 (68)
T 1lv3_A 7 TITVNCPTCGKTVVW 21 (68)
T ss_dssp CCEEECTTTCCEEEC
T ss_pred CCcCcCCCCCCcccc
Confidence 456899999999973
No 117
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=44.99 E-value=5 Score=24.85 Aligned_cols=32 Identities=19% Similarity=0.600 Sum_probs=24.2
Q ss_pred ccCcccccccchhcchhhcCCCCcccCccccchhccc
Q 035729 113 SYCPNRNCMALVVNECERKGRMKKAQCPNCKHWFCFR 149 (208)
Q Consensus 113 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~ 149 (208)
+.|| +|.+.-..-... ...+.|..|+...|.-
T Consensus 35 VkCp--~C~~~q~VFSha---~t~V~C~~Cg~~L~~P 66 (82)
T 3u5c_b 35 VKCP--GCLNITTVFSHA---QTAVTCESCSTILCTP 66 (82)
T ss_dssp EECT--TSCSCEEEESBC---SSCCCCSSSCCCCEEC
T ss_pred EECC--CCCCeeEEEecC---CeEEEccccCCEEecc
Confidence 7899 898876654432 5789999999988863
No 118
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=44.92 E-value=11 Score=26.57 Aligned_cols=40 Identities=25% Similarity=0.576 Sum_probs=27.2
Q ss_pred ccCCCccccccccccccccccccc-cCCCCChhHHHHHHHHHHH
Q 035729 18 EGNGSSFTCEICIEPMAANKKFKN-KNLCTHPFCQECIAKYIQV 60 (208)
Q Consensus 18 ~~~~~~~~C~iC~~~~~~~~~~~~-~~~C~H~~C~~Cl~~~~~~ 60 (208)
..+.....|.||-+.-.. +.- ...|...||.+||...+..
T Consensus 74 DeDG~~~yC~wC~~Gg~l---~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 74 DDDGYQSYCTICCGGREV---LMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp CTTSSBSSCTTTSCCSEE---EECSSTTTCCEEEHHHHHHHTCT
T ss_pred CCCCCcceeeEecCCCeE---EeeCCCCCCCchhHHHHHHhcCH
Confidence 345557899999976521 111 1268899999999988743
No 119
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=44.87 E-value=5.7 Score=22.94 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=23.3
Q ss_pred CCcccCccccchhccccCc-CcCCCCCCh
Q 035729 134 MKKAQCPNCKHWFCFRCKL-KWHGGYHCE 161 (208)
Q Consensus 134 ~~~~~C~~C~~~~C~~C~~-~~H~~~~C~ 161 (208)
...++|..|+..+|..|.. ..|.+|.-.
T Consensus 18 ~l~lfC~~d~~~iC~~C~~~~~H~~H~~~ 46 (64)
T 2d8u_A 18 KINIYCLTCEVPTCSMCKVFGIHKACEVA 46 (64)
T ss_dssp CCCSEESSSCCCCCSHHHHSSSTTSSCEE
T ss_pred ccceEcCcCCceeCccccCCCcCCCCCee
Confidence 5789999999999999986 588887443
No 120
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=44.86 E-value=4.8 Score=24.79 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=24.0
Q ss_pred CCcccCccccchhccccCc-CcCCCCCCh
Q 035729 134 MKKAQCPNCKHWFCFRCKL-KWHGGYHCE 161 (208)
Q Consensus 134 ~~~~~C~~C~~~~C~~C~~-~~H~~~~C~ 161 (208)
...++|..|+..+|..|.. ..|.+|+-.
T Consensus 28 ~l~lfC~~d~~~iC~~C~~~~~H~~H~~~ 56 (84)
T 2dja_A 28 KVNMYCVSDDQLICALCKLVGRHRDHQVA 56 (84)
T ss_dssp CCCEEETTTTEEECHHHHHTSTTTTCCBC
T ss_pred cccEEcCCCCceEcccCcCCCCCCCCCcc
Confidence 5789999999999999998 789887544
No 121
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=42.40 E-value=19 Score=18.27 Aligned_cols=16 Identities=25% Similarity=0.658 Sum_probs=10.7
Q ss_pred hccccCcCcCCCCCCh
Q 035729 146 FCFRCKLKWHGGYHCE 161 (208)
Q Consensus 146 ~C~~C~~~~H~~~~C~ 161 (208)
.|++|.+..|....|.
T Consensus 2 ~C~~Cg~~GH~~~~C~ 17 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCR 17 (37)
T ss_dssp CBSSSCCSSCCTTTSS
T ss_pred cccccCCCCcchhhCc
Confidence 3667777777766665
No 122
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=41.98 E-value=31 Score=22.75 Aligned_cols=47 Identities=19% Similarity=0.295 Sum_probs=27.5
Q ss_pred ChhHHHHHHHHHHhhh-hcC---------CCcccCcccccccchhcchhhcCCCCcc-cCccccch
Q 035729 91 PSSLFSKWCDLLCEDY-VRG---------YERSYCPNRNCMALVVNECERKGRMKKA-QCPNCKHW 145 (208)
Q Consensus 91 ~~~~~~~~~~~~~~~~-~~~---------~~~~~Cp~~~C~~~~~~~~~~~~~~~~~-~C~~C~~~ 145 (208)
.++.++.......+.. +.. +...+|. +|++.+... .... .||.|+..
T Consensus 42 ~~e~l~f~f~~~~~gt~~~e~a~L~i~~~p~~~~C~--~CG~~~e~~------~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 42 DKSLFVSAFETFREESLVCKDAILDIVDEKVELECK--DCSHVFKPN------ALDYGVCEKCHSK 99 (119)
T ss_dssp CHHHHHHHHHHHGGGCTTTSSCCEEEEEECCEEECS--SSSCEECSC------CSTTCCCSSSSSC
T ss_pred cHHHHHHHHHHHHhCChhhcCcEEEEEeccceEEcC--CCCCEEeCC------CCCCCcCccccCC
Confidence 4456665555555555 322 3457888 788876653 2345 78877653
No 123
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=41.43 E-value=15 Score=23.54 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=17.7
Q ss_pred CcccCCCCCceeEecCCCCceEeC
Q 035729 182 KWARCPGCGHCVQRKNGCHVMQDS 205 (208)
Q Consensus 182 ~~k~CP~C~~~i~k~~GCnhm~C~ 205 (208)
+...||.|+..++.++| +..|.
T Consensus 31 M~~~CP~Cq~eL~~~g~--~~hC~ 52 (101)
T 2jne_A 31 MELHCPQCQHVLDQDNG--HARCR 52 (101)
T ss_dssp CCCBCSSSCSBEEEETT--EEEET
T ss_pred ccccCccCCCcceecCC--EEECc
Confidence 34899999999999888 55575
No 124
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=40.96 E-value=41 Score=20.29 Aligned_cols=63 Identities=22% Similarity=0.451 Sum_probs=38.0
Q ss_pred CCCccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhcCCCccccCCccccCCCCCcccccC
Q 035729 20 NGSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMVQDNNTAKIECPGLNCQKNLDPFSCKP 88 (208)
Q Consensus 20 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~ 88 (208)
+.....| ||.........++.-..|..-|...|+.-...... ......||. |.....+..++.
T Consensus 9 ~~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~---~~~~~~C~~--C~~~~~~~~~K~ 71 (79)
T 1wep_A 9 ALVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAV---DIDIYHCPD--CEAVFGPSIMKN 71 (79)
T ss_dssp CCCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHT---TCSBBCCTT--TTTTSCSCBCCC
T ss_pred cCCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCccccccc---CCCeEECCC--cccccCCCceee
Confidence 4456677 88887643333434456777778888764333221 234679998 987665555544
No 125
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=39.71 E-value=6.4 Score=26.95 Aligned_cols=33 Identities=18% Similarity=0.410 Sum_probs=21.8
Q ss_pred CCcccccccccccccc-ccccccCCCCChhHHHH
Q 035729 21 GSSFTCEICIEPMAAN-KKFKNKNLCTHPFCQEC 53 (208)
Q Consensus 21 ~~~~~C~iC~~~~~~~-~~~~~~~~C~H~~C~~C 53 (208)
.....|.+|..++... ..-..-..|.|.+|..|
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C 86 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKC 86 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTS
T ss_pred CCCccccccCCCcccccCCCCCCCCCCccccccc
Confidence 3567899999998311 11123456888888877
No 126
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.05 E-value=12 Score=22.00 Aligned_cols=40 Identities=23% Similarity=0.550 Sum_probs=28.0
Q ss_pred cccCcccccccchhcchhhcCCCCcccCccccchhccccCcCcCCCCCChh
Q 035729 112 RSYCPNRNCMALVVNECERKGRMKKAQCPNCKHWFCFRCKLKWHGGYHCEE 162 (208)
Q Consensus 112 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~~~~C~~ 162 (208)
...|...+|.... ...+.|..|+..||...+.+ ..|.|..
T Consensus 12 ~~~Cs~~~Ck~~~---------ll~f~C~~C~~~FC~~HR~~--e~H~C~~ 51 (63)
T 1x4v_A 12 TNKCERAGCRQRE---------MMKLTCERCSRNFCIKHRHP--LDHDCSG 51 (63)
T ss_dssp CCCCCSTTCCCCC---------SSCCBCSSSCCBCCHHHHST--TSSCCCS
T ss_pred CCCCCccCCCCCC---------ccceECCCCCcccCcccCCc--cCCcCCC
Confidence 4578877887651 24578999999999987753 2235654
No 127
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=38.87 E-value=9.9 Score=22.81 Aligned_cols=30 Identities=17% Similarity=0.303 Sum_probs=17.6
Q ss_pred CcccCcccccccchhcchhhcCCCCcccCccccchh
Q 035729 111 ERSYCPNRNCMALVVNECERKGRMKKAQCPNCKHWF 146 (208)
Q Consensus 111 ~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 146 (208)
++..|| .|..-+..... .....|+.|+..|
T Consensus 7 ~iL~CP--~ck~~L~~~~~----~~~LiC~~cg~~Y 36 (70)
T 2js4_A 7 DILVCP--VCKGRLEFQRA----QAELVCNADRLAF 36 (70)
T ss_dssp CCCBCT--TTCCBEEEETT----TTEEEETTTTEEE
T ss_pred hheECC--CCCCcCEEeCC----CCEEEcCCCCcee
Confidence 356788 67776654432 3456666655544
No 128
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=38.09 E-value=9.8 Score=22.52 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=23.8
Q ss_pred cccCcccccccchhcchhhcCCCCcccCccccchhcc
Q 035729 112 RSYCPNRNCMALVVNECERKGRMKKAQCPNCKHWFCF 148 (208)
Q Consensus 112 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 148 (208)
.+.|| +|.+.-..-... ...+.|..|+...|.
T Consensus 7 ~VKCp--~C~niq~VFShA---~tvV~C~~Cg~~L~~ 38 (66)
T 1qxf_A 7 KVKCP--DCEHEQVIFDHP---STIVKCIICGRTVAE 38 (66)
T ss_dssp EEECT--TTCCEEEEESSC---SSCEECSSSCCEEEE
T ss_pred EEECC--CCCCceEEEecC---ceEEEcccCCCEEee
Confidence 36788 798876654432 578999999998876
No 129
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=37.82 E-value=26 Score=20.26 Aligned_cols=36 Identities=14% Similarity=0.164 Sum_probs=25.7
Q ss_pred ccCCccccCCCCCcccccCCCChhHHHHHHHHHHhhhh
Q 035729 70 IECPGLNCQKNLDPFSCKPMIPSSLFSKWCDLLCEDYV 107 (208)
Q Consensus 70 i~CP~~~C~~~l~~~~i~~~l~~~~~~~~~~~~~~~~~ 107 (208)
-.||. |+.......-..+-+++-+.+|...+...+.
T Consensus 19 ~~CP~--CG~~T~~~hParfSp~Dky~~yR~~~kk~~~ 54 (60)
T 2apo_B 19 EICPK--CGEKTVIPKPPKFSLEDRWGKYRRMLKRALK 54 (60)
T ss_dssp SBCSS--SCSBCBCCCCCCCCTTCTTHHHHHHHHHHHH
T ss_pred ccCcC--CCCcCCCCCCCCCCCCcchHHHHHHHHHHhc
Confidence 45888 8886666566666677888888877776543
No 130
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=37.75 E-value=14 Score=19.34 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=11.7
Q ss_pred CCcccCCCCCceeEe
Q 035729 181 MKWARCPGCGHCVQR 195 (208)
Q Consensus 181 ~~~k~CP~C~~~i~k 195 (208)
.....||+|+..|.-
T Consensus 7 ~~~~~C~~C~~~i~~ 21 (39)
T 2i5o_A 7 EDQVPCEKCGSLVPV 21 (39)
T ss_dssp CCEEECTTTCCEEEG
T ss_pred CCCcccccccCcCCc
Confidence 455689999999864
No 131
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=36.96 E-value=10 Score=22.73 Aligned_cols=29 Identities=10% Similarity=0.164 Sum_probs=16.8
Q ss_pred cccCcccccccchhcchhhcCCCCcccCccccchh
Q 035729 112 RSYCPNRNCMALVVNECERKGRMKKAQCPNCKHWF 146 (208)
Q Consensus 112 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 146 (208)
+..|| .|..-+..... .....|+.|+..|
T Consensus 8 iL~CP--~ck~~L~~~~~----~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 8 ILACP--ICKGPLKLSAD----KTELISKGAGLAY 36 (69)
T ss_dssp TCCCT--TTCCCCEECTT----SSEEEETTTTEEE
T ss_pred heeCC--CCCCcCeEeCC----CCEEEcCCCCcEe
Confidence 56788 67766554432 3456666555444
No 132
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=36.63 E-value=9 Score=22.85 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=17.0
Q ss_pred cccCcccccccchhcchhhcCCCCcccCccccchh
Q 035729 112 RSYCPNRNCMALVVNECERKGRMKKAQCPNCKHWF 146 (208)
Q Consensus 112 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 146 (208)
+..|| .|..-+..... .....|+.|+..|
T Consensus 8 iL~CP--~ck~~L~~~~~----~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 8 ILVCP--LCKGPLVFDKS----KDELICKGDRLAF 36 (68)
T ss_dssp ECBCT--TTCCBCEEETT----TTEEEETTTTEEE
T ss_pred heECC--CCCCcCeEeCC----CCEEEcCCCCcEe
Confidence 56788 67776554432 3456666555444
No 133
>2jyp_A Aragonite protein AP7; protein C-terminal fragment, unknown function; NMR {Synthetic}
Probab=36.14 E-value=18 Score=17.67 Aligned_cols=19 Identities=11% Similarity=0.268 Sum_probs=14.5
Q ss_pred cCCCccccccccccccccc
Q 035729 19 GNGSSFTCEICIEPMAANK 37 (208)
Q Consensus 19 ~~~~~~~C~iC~~~~~~~~ 37 (208)
+.....+|.+|+.-..+.+
T Consensus 5 frrpfhecalcysitdpge 23 (36)
T 2jyp_A 5 FRRPFHECALCYSITDPGE 23 (36)
T ss_dssp STTTTTCCSSSTTTTTTTC
T ss_pred ccCccchheeEEeecCcch
Confidence 4567789999998776654
No 134
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=36.04 E-value=18 Score=26.93 Aligned_cols=33 Identities=21% Similarity=0.524 Sum_probs=24.1
Q ss_pred cccccccccccccccccccCCCCChhHHHHHHH
Q 035729 24 FTCEICIEPMAANKKFKNKNLCTHPFCQECIAK 56 (208)
Q Consensus 24 ~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~ 56 (208)
..|.+|...|.....-..-..||++||..|...
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 489999998865432223557999999999654
No 135
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=35.91 E-value=12 Score=25.42 Aligned_cols=30 Identities=27% Similarity=0.543 Sum_probs=21.9
Q ss_pred CCcccCcccccccchhcchhhcCCCCcccCccccchh
Q 035729 110 YERSYCPNRNCMALVVNECERKGRMKKAQCPNCKHWF 146 (208)
Q Consensus 110 ~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 146 (208)
..+-.|| .|+.-+..+++ ..+.||.|+..|
T Consensus 25 ~~lP~CP--~C~seytYeDg-----~l~vCPeC~hEW 54 (138)
T 2akl_A 25 STLPPCP--QCNSEYTYEDG-----ALLVCPECAHEW 54 (138)
T ss_dssp CCSCCCT--TTCCCCCEECS-----SSEEETTTTEEE
T ss_pred ccCCCCC--CCCCcceEecC-----CeEECCcccccc
Confidence 3467799 78887776654 568888887776
No 136
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=35.59 E-value=18 Score=21.22 Aligned_cols=55 Identities=15% Similarity=0.324 Sum_probs=31.2
Q ss_pred CCCccccccccccccccccccccC-CCCChhHHHHHHHHHH--HHhhcCCCccccCCc
Q 035729 20 NGSSFTCEICIEPMAANKKFKNKN-LCTHPFCQECIAKYIQ--VMVQDNNTAKIECPG 74 (208)
Q Consensus 20 ~~~~~~C~iC~~~~~~~~~~~~~~-~C~H~~C~~Cl~~~~~--~~i~~~~~~~i~CP~ 74 (208)
+.....|.+|..++.+.+.++.-. .|.--|...|+.-... ..|.........||.
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~ 62 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDT 62 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHH
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcC
Confidence 445678999999986554444444 7887888888864332 222211223456765
No 137
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=35.49 E-value=33 Score=30.66 Aligned_cols=61 Identities=18% Similarity=0.448 Sum_probs=41.0
Q ss_pred CCccccccccccccccccc---cccCCCCC-----------------------hhHHHHHHHHHHHHhhcCCCccccCCc
Q 035729 21 GSSFTCEICIEPMAANKKF---KNKNLCTH-----------------------PFCQECIAKYIQVMVQDNNTAKIECPG 74 (208)
Q Consensus 21 ~~~~~C~iC~~~~~~~~~~---~~~~~C~H-----------------------~~C~~Cl~~~~~~~i~~~~~~~i~CP~ 74 (208)
....+|+-|+.++.++... ..+..|.| .+|.+|-+.|-...-..-+..++.||.
T Consensus 104 pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~ 183 (772)
T 4g9i_A 104 PDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPV 183 (772)
T ss_dssp CCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCcc
Confidence 3456999999998665421 22445532 489999999975543333456899999
Q ss_pred cccCCCCCc
Q 035729 75 LNCQKNLDP 83 (208)
Q Consensus 75 ~~C~~~l~~ 83 (208)
|+-.+..
T Consensus 184 --CGP~l~l 190 (772)
T 4g9i_A 184 --CGPSYRL 190 (772)
T ss_dssp --TSCCEEE
T ss_pred --CCceEEE
Confidence 9976543
No 138
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=35.35 E-value=15 Score=22.40 Aligned_cols=44 Identities=20% Similarity=0.503 Sum_probs=30.6
Q ss_pred ccCcccccccchhcchhhcCCCCcccCccccchhccccCcCcCCCCCChhhhccc
Q 035729 113 SYCPNRNCMALVVNECERKGRMKKAQCPNCKHWFCFRCKLKWHGGYHCEESGNLR 167 (208)
Q Consensus 113 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~~~~C~~~~~~~ 167 (208)
..|...+|+..- ..-+.|..|+..||...+.+ ..|.|.....|.
T Consensus 15 ~~Cs~~~C~~~d---------flpf~C~~C~~~FC~~HR~~--e~H~C~~~~~~~ 58 (75)
T 1wys_A 15 QHCQVQHCRQRD---------FLPFVCDGCSGIFCLEHRSK--DSHGCSEVNVVK 58 (75)
T ss_dssp CCCSCTTTCCCS---------CCCEECTTTCCEECSTTCSS--GGGTCCCCSSCS
T ss_pred CCcCcccCCCcc---------ceeeECcccCcCcCcccCCc--cccCCCCCcccc
Confidence 567777787651 35688999999999987764 223676655543
No 139
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=35.17 E-value=17 Score=21.04 Aligned_cols=28 Identities=25% Similarity=0.639 Sum_probs=18.7
Q ss_pred hcCCCcccCcccccccchhcchhhcCCCCcccCccccch
Q 035729 107 VRGYERSYCPNRNCMALVVNECERKGRMKKAQCPNCKHW 145 (208)
Q Consensus 107 ~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 145 (208)
+..+.+..|| .|+.+.. ....|+.||++
T Consensus 25 l~~p~l~~c~--~cGe~~~---------~H~vc~~CG~Y 52 (60)
T 3v2d_5 25 LTPPTLVPCP--ECKAMKP---------PHTVCPECGYY 52 (60)
T ss_dssp CCCCCCEECT--TTCCEEC---------TTSCCTTTCEE
T ss_pred ccCCceeECC--CCCCeec---------ceEEcCCCCcC
Confidence 4467788898 5776543 45668888754
No 140
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=34.98 E-value=18 Score=19.76 Aligned_cols=28 Identities=21% Similarity=0.468 Sum_probs=17.9
Q ss_pred ccccchhcchhhcCCCCcccCccccchhcc
Q 035729 119 NCMALVVNECERKGRMKKAQCPNCKHWFCF 148 (208)
Q Consensus 119 ~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 148 (208)
.|+.-+..++. ...+.+.||.||+..=.
T Consensus 8 rCg~~fs~~el--~~lP~IrCpyCGyrii~ 35 (48)
T 4ayb_P 8 KCWKTFTDEQL--KVLPGVRCPYCGYKIIF 35 (48)
T ss_dssp CTTTTCCCCCS--CCCSSSCCTTTCCSCEE
T ss_pred ccCCCccHHHH--hhCCCcccCccCcEEEE
Confidence 57666655443 22578888888876533
No 141
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=34.71 E-value=13 Score=22.06 Aligned_cols=30 Identities=10% Similarity=-0.051 Sum_probs=17.6
Q ss_pred CcccCcccccccchhcchhhcCCCCcccCccccchh
Q 035729 111 ERSYCPNRNCMALVVNECERKGRMKKAQCPNCKHWF 146 (208)
Q Consensus 111 ~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 146 (208)
++..|| .|..-+..... .....|+.|+..|
T Consensus 9 eiL~CP--~ck~~L~~~~~----~g~LvC~~c~~~Y 38 (67)
T 2jny_A 9 EVLACP--KDKGPLRYLES----EQLLVNERLNLAY 38 (67)
T ss_dssp CCCBCT--TTCCBCEEETT----TTEEEETTTTEEE
T ss_pred HHhCCC--CCCCcCeEeCC----CCEEEcCCCCccc
Confidence 366788 67776554432 3456676665544
No 142
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=33.32 E-value=22 Score=20.56 Aligned_cols=28 Identities=25% Similarity=0.705 Sum_probs=19.0
Q ss_pred hcCCCcccCcccccccchhcchhhcCCCCcccCccccch
Q 035729 107 VRGYERSYCPNRNCMALVVNECERKGRMKKAQCPNCKHW 145 (208)
Q Consensus 107 ~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 145 (208)
+..+.++.|| .|+... .....|+.||++
T Consensus 25 l~~p~l~~c~--~cG~~~---------~pH~vc~~CG~Y 52 (60)
T 2zjr_Z 25 LTAPNLTECP--QCHGKK---------LSHHICPNCGYY 52 (60)
T ss_dssp CCCCCCEECT--TTCCEE---------CTTBCCTTTCBS
T ss_pred ccCCCceECC--CCCCEe---------CCceEcCCCCcC
Confidence 4467788888 577653 355778888754
No 143
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=33.24 E-value=13 Score=21.75 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=23.9
Q ss_pred cccCcccccccchhcchhhcCCCCcccCccccchhcc
Q 035729 112 RSYCPNRNCMALVVNECERKGRMKKAQCPNCKHWFCF 148 (208)
Q Consensus 112 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 148 (208)
.+.|| +|.+.-..-... ...+.|..|+...|.
T Consensus 15 ~VkCp--~C~~~q~VFSha---~t~V~C~~Cgt~L~~ 46 (63)
T 3j20_W 15 RVKCI--DCGNEQIVFSHP---ATKVRCLICGATLVE 46 (63)
T ss_dssp EEECS--SSCCEEEEESSC---SSCEECSSSCCEEEE
T ss_pred EEECC--CCCCeeEEEecC---CeEEEccCcCCEEec
Confidence 37899 898876654332 578999999988876
No 144
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=33.03 E-value=47 Score=20.01 Aligned_cols=36 Identities=22% Similarity=0.563 Sum_probs=25.1
Q ss_pred CccccccccccccccccccccCCCCChhHHHHHHH-HH
Q 035729 22 SSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAK-YI 58 (208)
Q Consensus 22 ~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~-~~ 58 (208)
....|.+|-+..... ....-+.|.-.||..|++. +.
T Consensus 29 ~~v~C~~C~~~~~~~-A~ksCl~C~~s~C~~hl~~~H~ 65 (78)
T 2ffw_A 29 EKVLCQFCDQDPAQD-AVKTCVTCEVSYCDECLKATHP 65 (78)
T ss_dssp CCCBCSSCCSSSCCB-CCEEETTTTEEECHHHHHHHSC
T ss_pred CCccCCcCCCCCCCC-CeeEccCccchhhhhhhHhhcC
Confidence 357899998654122 2224678999999999986 53
No 145
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=32.12 E-value=30 Score=23.83 Aligned_cols=53 Identities=23% Similarity=0.580 Sum_probs=33.3
Q ss_pred CCCccccccccccccccccccccCCCCChhHHHHHHHHHHH----HhhcCCCccccCCccccCC
Q 035729 20 NGSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQV----MVQDNNTAKIECPGLNCQK 79 (208)
Q Consensus 20 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~----~i~~~~~~~i~CP~~~C~~ 79 (208)
+.....|.+|.+.-. ++.-..|..+||..|+...+.. .|.. ...+-.||. |..
T Consensus 60 Dg~~d~C~vC~~GG~----LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~-p~~~W~C~~--C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGN----LICCDFCHNAFCKKCILRNLGRKELSTIMD-ENNQWYCYI--CHP 116 (142)
T ss_dssp TSCBCSCSSSCCCSS----EEECSSSCCEEEHHHHHHHTCHHHHHHHHT-STTCCCCTT--TCC
T ss_pred CCCCCeecccCCCCc----EEeCCCCCCeeeHhhcCCCCChhhhhhccc-CCCCCEeec--ccC
Confidence 444678999987652 2234578899999999977632 2211 112347888 764
No 146
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=32.08 E-value=28 Score=26.21 Aligned_cols=23 Identities=17% Similarity=0.396 Sum_probs=15.3
Q ss_pred HHHHHHHhCCcccCCCCCceeEe
Q 035729 173 AFGQLAERMKWARCPGCGHCVQR 195 (208)
Q Consensus 173 ~~~~~~~~~~~k~CP~C~~~i~k 195 (208)
=+..+.+......||.|+.....
T Consensus 207 C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 207 CVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp HHHHHTTTCSSCBCTTTCCBCCS
T ss_pred HHHHHHHhCCCCCCCCCCCCCCC
Confidence 34455555566799999987543
No 147
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=31.63 E-value=29 Score=24.79 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=18.3
Q ss_pred ccCCCCCceeEecCCCCceEeCCC
Q 035729 184 ARCPGCGHCVQRKNGCHVMQDSVL 207 (208)
Q Consensus 184 k~CP~C~~~i~k~~GCnhm~C~~~ 207 (208)
-.|+.|+.+..+.+ ++|.|+..
T Consensus 141 a~~~~~g~~m~~~~--~~~~cp~~ 162 (179)
T 3m7n_A 141 ALCSNCKTEMVREG--DILKCPEC 162 (179)
T ss_dssp CBCTTTCCBCEECS--SSEECSSS
T ss_pred ecccccCCceEECC--CEEECCCC
Confidence 57999999988876 99999753
No 148
>2yww_A Aspartate carbamoyltransferase regulatory chain; ATP complex, structural genomics, NPPSFA; HET: ATP; 2.00A {Methanocaldococcus jannaschii}
Probab=31.57 E-value=12 Score=26.02 Aligned_cols=10 Identities=40% Similarity=0.820 Sum_probs=8.7
Q ss_pred CcccCccccc
Q 035729 111 ERSYCPNRNC 120 (208)
Q Consensus 111 ~~~~Cp~~~C 120 (208)
+...||||.|
T Consensus 104 gvl~C~Np~C 113 (149)
T 2yww_A 104 GTLKCTNPNC 113 (149)
T ss_dssp SSSCCSCTTS
T ss_pred CeEEcCCCCC
Confidence 4678999999
No 149
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=31.55 E-value=9.3 Score=28.35 Aligned_cols=33 Identities=24% Similarity=0.560 Sum_probs=23.6
Q ss_pred cccccccccccccccccccCCCCChhHHHHHHH
Q 035729 24 FTCEICIEPMAANKKFKNKNLCTHPFCQECIAK 56 (208)
Q Consensus 24 ~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~ 56 (208)
..|.+|...|........--.||++||..|...
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 589999988854432223457999999998554
No 150
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=30.10 E-value=13 Score=22.92 Aligned_cols=28 Identities=14% Similarity=0.491 Sum_probs=16.4
Q ss_pred cccCcccccccchhcchhhcCCCCcccCccccch
Q 035729 112 RSYCPNRNCMALVVNECERKGRMKKAQCPNCKHW 145 (208)
Q Consensus 112 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 145 (208)
.++|. +|+........ .....|+.|+.+
T Consensus 37 ~I~Cn--DC~~~s~v~~h----~lg~kC~~C~Sy 64 (79)
T 2k2d_A 37 DILCN--DCNGRSTVQFH----ILGMKCKICESY 64 (79)
T ss_dssp EEEES--SSCCEEEEECC----TTCCCCTTTSCC
T ss_pred EEECC--CCCCCccCCce----eecccCcCCCCc
Confidence 46777 78876654422 233467776544
No 151
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=29.85 E-value=26 Score=31.30 Aligned_cols=60 Identities=22% Similarity=0.458 Sum_probs=40.5
Q ss_pred CCccccccccccccccccc---cccCCCCC-----------------------hhHHHHHHHHHHHHhhcCCCccccCCc
Q 035729 21 GSSFTCEICIEPMAANKKF---KNKNLCTH-----------------------PFCQECIAKYIQVMVQDNNTAKIECPG 74 (208)
Q Consensus 21 ~~~~~C~iC~~~~~~~~~~---~~~~~C~H-----------------------~~C~~Cl~~~~~~~i~~~~~~~i~CP~ 74 (208)
....+|+-|+.++.++.+. ..+..|.| .+|.+|.+.|-...-..-+..++.||.
T Consensus 109 pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~ 188 (761)
T 3vth_A 109 PDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFD 188 (761)
T ss_dssp CCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTT
T ss_pred CCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCc
Confidence 4467999999998655321 12445533 479999999976543333456899999
Q ss_pred cccCCCCC
Q 035729 75 LNCQKNLD 82 (208)
Q Consensus 75 ~~C~~~l~ 82 (208)
|+-.+.
T Consensus 189 --CGP~l~ 194 (761)
T 3vth_A 189 --CGPSLS 194 (761)
T ss_dssp --TSCCEE
T ss_pred --cCCeeE
Confidence 987653
No 152
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=29.74 E-value=22 Score=22.00 Aligned_cols=15 Identities=33% Similarity=0.908 Sum_probs=10.9
Q ss_pred ccCCCCCceeEecCC
Q 035729 184 ARCPGCGHCVQRKNG 198 (208)
Q Consensus 184 k~CP~C~~~i~k~~G 198 (208)
..||.|+..+++++|
T Consensus 3 ~~CP~C~~~l~~~~~ 17 (81)
T 2jrp_A 3 ITCPVCHHALERNGD 17 (81)
T ss_dssp CCCSSSCSCCEECSS
T ss_pred CCCCCCCCccccCCC
Confidence 568888888777654
No 153
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=29.67 E-value=28 Score=16.11 Aligned_cols=19 Identities=32% Similarity=0.585 Sum_probs=15.5
Q ss_pred hhccccCcCcCCCCCChhh
Q 035729 145 WFCFRCKLKWHGGYHCEES 163 (208)
Q Consensus 145 ~~C~~C~~~~H~~~~C~~~ 163 (208)
..|+.|.+.-|....|.+.
T Consensus 3 ~~Cf~CG~~GH~ardC~~~ 21 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEE 21 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC
T ss_pred CeeEeCCCCCcccccCCCc
Confidence 4689999999998888754
No 154
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=29.25 E-value=38 Score=25.61 Aligned_cols=26 Identities=15% Similarity=0.410 Sum_probs=19.5
Q ss_pred HHHHHHHHhCCcccCCCCCceeEecC
Q 035729 172 IAFGQLAERMKWARCPGCGHCVQRKN 197 (208)
Q Consensus 172 ~~~~~~~~~~~~k~CP~C~~~i~k~~ 197 (208)
..+..+.....+..||+||..+.+.+
T Consensus 211 q~~~~i~~~~~Iv~Cp~CgRIL~~~~ 236 (256)
T 3na7_A 211 KIYTEVLTSGDMITCPYCGRILYAEG 236 (256)
T ss_dssp HHHHHHHHSSSCEECTTTCCEEECSC
T ss_pred HHHHHHHCCCCEEECCCCCeeEEeCc
Confidence 34555556678899999999998753
No 155
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=29.21 E-value=57 Score=22.02 Aligned_cols=35 Identities=26% Similarity=0.682 Sum_probs=25.0
Q ss_pred CCCccccccccccccccccccccCCCCChhHHHHHHHHH
Q 035729 20 NGSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYI 58 (208)
Q Consensus 20 ~~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~ 58 (208)
+.....|.||.+.-.. +--..|...||..|+...+
T Consensus 54 Dg~~~~C~vC~dGG~L----lcCd~Cpr~Fc~~Cl~~~l 88 (129)
T 3ql9_A 54 DGMDEQCRWCAEGGNL----ICCDFCHNAFCKKCILRNL 88 (129)
T ss_dssp TSCBSSCTTTCCCSEE----EECSSSSCEEEHHHHHHHT
T ss_pred CCCCCcCeecCCCCee----EecCCCchhhhHHHhCCCc
Confidence 4445679999876522 1245788999999999874
No 156
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=29.02 E-value=21 Score=21.34 Aligned_cols=27 Identities=19% Similarity=0.583 Sum_probs=17.1
Q ss_pred cccCcccccccchhcchhhcCCCCcccCccccch
Q 035729 112 RSYCPNRNCMALVVNECERKGRMKKAQCPNCKHW 145 (208)
Q Consensus 112 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 145 (208)
...|+ .|+.-+..... ..+.|+.||+.
T Consensus 28 ~Y~C~--~CG~~~e~~~~-----d~irCp~CG~R 54 (70)
T 1twf_L 28 KYICA--ECSSKLSLSRT-----DAVRCKDCGHR 54 (70)
T ss_dssp CEECS--SSCCEECCCTT-----STTCCSSSCCC
T ss_pred EEECC--CCCCcceeCCC-----CCccCCCCCce
Confidence 35688 78877654422 45678888763
No 157
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=28.52 E-value=24 Score=20.32 Aligned_cols=35 Identities=26% Similarity=0.473 Sum_probs=20.9
Q ss_pred CcccCcccccccchhcchhhcCCCCcccCccccch
Q 035729 111 ERSYCPNRNCMALVVNECERKGRMKKAQCPNCKHW 145 (208)
Q Consensus 111 ~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 145 (208)
+.+.|..+.|++++-+--..+.....+.|+-|+..
T Consensus 8 ~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~ 42 (59)
T 2yrc_A 8 EPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQR 42 (59)
T ss_dssp CCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCE
T ss_pred CCcccCCCCCCeEECCceEEECCCCEEEcccCCCc
Confidence 45778755688877544332222467778766543
No 158
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.24 E-value=29 Score=20.13 Aligned_cols=36 Identities=17% Similarity=0.589 Sum_probs=25.7
Q ss_pred CCccccccccccccccccccccCCCCChhHHHHHHHHHH
Q 035729 21 GSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQ 59 (208)
Q Consensus 21 ~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~ 59 (208)
..-+.|..|...+. ...| ...=+..||..|..+.+.
T Consensus 31 ~~CF~C~~C~~~L~-~~~~--~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 31 VGCFVCSTCRAQLR-GQHF--YAVERRAYCEGCYVATLE 66 (72)
T ss_dssp TTTCBCSSSCCBCT-TSCE--EESSSCEEEHHHHHHHHH
T ss_pred ccCCcccccCCcCC-cCcC--EeeCCeEECHHHHHHHHc
Confidence 44578999998884 3344 234578999999987664
No 159
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=28.08 E-value=32 Score=27.93 Aligned_cols=36 Identities=25% Similarity=0.555 Sum_probs=26.4
Q ss_pred cCCCccccccccccccccccccccC--CCCChhHHHHHHHHH
Q 035729 19 GNGSSFTCEICIEPMAANKKFKNKN--LCTHPFCQECIAKYI 58 (208)
Q Consensus 19 ~~~~~~~C~iC~~~~~~~~~~~~~~--~C~H~~C~~Cl~~~~ 58 (208)
.+.....|.+|-+.-.. +.-. .|...||..|++..+
T Consensus 89 ~DG~~~yCr~C~~Gg~l----~~Cdn~~C~r~FC~~Ci~~n~ 126 (386)
T 2pv0_B 89 DDGYQSYCSICCSGETL----LICGNPDCTRCYCFECVDSLV 126 (386)
T ss_dssp SSSSBCSCTTTCCCSSC----EECCSTTCCCEECHHHHHHHT
T ss_pred CCCCcccceEcCCCCeE----EEeCCCCCCcchHHHHHHHhc
Confidence 44557799999976522 1223 788999999999987
No 160
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=27.84 E-value=53 Score=22.37 Aligned_cols=37 Identities=14% Similarity=0.100 Sum_probs=21.1
Q ss_pred CChhHHHHHHHHHHhhhhc-C--------CCcccCcccccccchhcch
Q 035729 90 IPSSLFSKWCDLLCEDYVR-G--------YERSYCPNRNCMALVVNEC 128 (208)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~-~--------~~~~~Cp~~~C~~~~~~~~ 128 (208)
+.++.++.....+.+..+. . +...+|. +|++.+....
T Consensus 39 v~~e~l~faf~~~~~gt~~e~A~L~i~~~p~~~~C~--~CG~~~~~~~ 84 (139)
T 3a43_A 39 VAEDIVKFAMEQLFAGTIAEGAEIEFVEEEAVFKCR--NCNYEWKLKE 84 (139)
T ss_dssp CCHHHHHHHHHHHHTTSTTTTCEEEEEEECCEEEET--TTCCEEEGGG
T ss_pred hhHHHHHHHHHHHHcCCcccCCEEEEEecCCcEECC--CCCCEEeccc
Confidence 3445555544554544332 2 3467898 7988776543
No 161
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.69 E-value=24 Score=19.42 Aligned_cols=13 Identities=23% Similarity=0.588 Sum_probs=10.5
Q ss_pred CcccCCCCCceeE
Q 035729 182 KWARCPGCGHCVQ 194 (208)
Q Consensus 182 ~~k~CP~C~~~i~ 194 (208)
+.+.||+|++..-
T Consensus 11 ~~~~CPrCn~~f~ 23 (49)
T 2e72_A 11 GRKICPRCNAQFR 23 (49)
T ss_dssp SCCCCTTTCCCCS
T ss_pred CceeCCccccccc
Confidence 6688999998764
No 162
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=27.39 E-value=71 Score=20.67 Aligned_cols=52 Identities=15% Similarity=0.369 Sum_probs=32.0
Q ss_pred Ccccccccccccc-----ccccccccCCCCChhHHHHHH--HHHHHHhhcCCCccccCCccccC
Q 035729 22 SSFTCEICIEPMA-----ANKKFKNKNLCTHPFCQECIA--KYIQVMVQDNNTAKIECPGLNCQ 78 (208)
Q Consensus 22 ~~~~C~iC~~~~~-----~~~~~~~~~~C~H~~C~~Cl~--~~~~~~i~~~~~~~i~CP~~~C~ 78 (208)
....|.+|+..-. ..+.++.=..|+..|...||. .-+...+..+. -.||. |.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~---W~C~~--C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALR---WQCIE--CK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSC---CCCTT--TC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccc---ccccc--CC
Confidence 4567999987642 122343455788888899985 23444555534 46877 65
No 163
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=27.14 E-value=29 Score=20.32 Aligned_cols=28 Identities=21% Similarity=0.481 Sum_probs=18.0
Q ss_pred cccCcccccccchhcchhhcCCCCcccCccccchh
Q 035729 112 RSYCPNRNCMALVVNECERKGRMKKAQCPNCKHWF 146 (208)
Q Consensus 112 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 146 (208)
...|. .|+.-+.... ...++|+.||+.+
T Consensus 21 ~Y~C~--~Cg~~~~l~~-----~~~iRC~~CG~RI 48 (63)
T 3h0g_L 21 IYLCA--DCGARNTIQA-----KEVIRCRECGHRV 48 (63)
T ss_dssp CCBCS--SSCCBCCCCS-----SSCCCCSSSCCCC
T ss_pred EEECC--CCCCeeecCC-----CCceECCCCCcEE
Confidence 45577 6777665442 3568888887654
No 164
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=25.72 E-value=14 Score=21.29 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=17.9
Q ss_pred CcccCccccchhccccCcCcCC
Q 035729 135 KKAQCPNCKHWFCFRCKLKWHG 156 (208)
Q Consensus 135 ~~~~C~~C~~~~C~~C~~~~H~ 156 (208)
--..|..|+..+|.+|...+..
T Consensus 24 ~Gh~C~yCk~r~CaRCGg~v~l 45 (62)
T 2a20_A 24 CGHNCSYCQTKFCARCGGRVSL 45 (62)
T ss_dssp CCEEBTTTCCEECTTSEEEEES
T ss_pred CCccccccCCeeecccCCEeee
Confidence 3467889999999999987664
No 165
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=25.25 E-value=85 Score=21.79 Aligned_cols=35 Identities=20% Similarity=0.553 Sum_probs=25.5
Q ss_pred CcccCcccccccchhcchhhcCCCCcccCccccchhccccCc
Q 035729 111 ERSYCPNRNCMALVVNECERKGRMKKAQCPNCKHWFCFRCKL 152 (208)
Q Consensus 111 ~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~ 152 (208)
+...|. .|...+.... .....|..|+..+|..|..
T Consensus 67 ~~~~C~--~C~~~fg~l~-----~~g~~C~~C~~~VC~~C~~ 101 (153)
T 2zet_C 67 NETHCA--RCLQPYRLLL-----NSRRQCLECSLFVCKSCSH 101 (153)
T ss_dssp GGTBCT--TTCCBGGGCS-----SCCEECTTTCCEECGGGEE
T ss_pred CCccch--hhcCcccccc-----CCCCcCCCCCchhhccccc
Confidence 346677 5776544332 3578999999999999995
No 166
>2jx1_A Myelin transcription factor 1; protein-DNA complex, transcription/DNA complex; HET: DNA; NMR {Mus musculus}
Probab=25.06 E-value=28 Score=17.24 Aligned_cols=11 Identities=27% Similarity=0.978 Sum_probs=9.1
Q ss_pred ccCCccccCCC
Q 035729 70 IECPGLNCQKN 80 (208)
Q Consensus 70 i~CP~~~C~~~ 80 (208)
++||.++|...
T Consensus 2 ~~CPtpGC~g~ 12 (31)
T 2jx1_A 2 LKCPTPGCDGS 12 (31)
T ss_dssp CSCSCTTCCSS
T ss_pred CcCCCCCcccc
Confidence 68999999864
No 167
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=24.85 E-value=51 Score=18.75 Aligned_cols=17 Identities=24% Similarity=0.493 Sum_probs=8.5
Q ss_pred hccccCcCcCCCCCChh
Q 035729 146 FCFRCKLKWHGGYHCEE 162 (208)
Q Consensus 146 ~C~~C~~~~H~~~~C~~ 162 (208)
.|+.|...-|....|.+
T Consensus 32 ~C~~Cg~~GH~ar~C~~ 48 (61)
T 2ihx_A 32 RCQLCNGMGHNAKQCRK 48 (61)
T ss_dssp BCTTTCCBSSCGGGCCC
T ss_pred eeCCCCCCCCCcCCCcC
Confidence 35555555555444443
No 168
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=24.81 E-value=25 Score=17.06 Aligned_cols=10 Identities=40% Similarity=1.079 Sum_probs=8.6
Q ss_pred ccCCCCCcee
Q 035729 184 ARCPGCGHCV 193 (208)
Q Consensus 184 k~CP~C~~~i 193 (208)
..||.|+..|
T Consensus 4 ~~C~~C~k~V 13 (31)
T 1zfo_A 4 PNCARCGKIV 13 (31)
T ss_dssp CBCSSSCSBC
T ss_pred CcCCccCCEE
Confidence 5799999887
No 169
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=24.76 E-value=26 Score=21.89 Aligned_cols=40 Identities=28% Similarity=0.719 Sum_probs=28.8
Q ss_pred cccCcccccccchhcchhhcCCCCcccCccccchhccccCcC-cCCCCCChhh
Q 035729 112 RSYCPNRNCMALVVNECERKGRMKKAQCPNCKHWFCFRCKLK-WHGGYHCEES 163 (208)
Q Consensus 112 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~-~H~~~~C~~~ 163 (208)
...|...+|.... ...+.|..|+..||...+.+ .| .|...
T Consensus 25 ~~~C~~~~Ck~~~---------~l~f~C~~C~~~FC~~HR~~e~H---~C~~~ 65 (86)
T 1wfe_A 25 SYSCSFKGCTDVE---------LVAVICPYCEKNFCLRHRHQSDH---DCEKL 65 (86)
T ss_dssp CEECCSTTCCCEE---------SSCEECTTTCCEECGGGCSTGGG---TCSSS
T ss_pred CCCCCCcCCCCCC---------ccceECCCCCcccccccCCccCC---CCCCC
Confidence 4568888888752 24578999999999987763 44 56543
No 170
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=24.70 E-value=53 Score=20.21 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=13.6
Q ss_pred chhccccCcCcCCCCCChhh
Q 035729 144 HWFCFRCKLKWHGGYHCEES 163 (208)
Q Consensus 144 ~~~C~~C~~~~H~~~~C~~~ 163 (208)
..+|+.|...-|....|.+.
T Consensus 5 ~~~C~~Cg~~GH~~~~Cp~~ 24 (83)
T 3nyb_B 5 KVQCTLCKSKKHSKERCPSI 24 (83)
T ss_dssp --CCSSSCCSSSCGGGCGGG
T ss_pred cCCCCCCCCCCCccccCCCc
Confidence 45677888888887778654
No 171
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=24.59 E-value=20 Score=16.26 Aligned_cols=13 Identities=38% Similarity=1.089 Sum_probs=8.9
Q ss_pred hhccccCcCcCCC
Q 035729 145 WFCFRCKLKWHGG 157 (208)
Q Consensus 145 ~~C~~C~~~~H~~ 157 (208)
.||-.|.++|-.|
T Consensus 6 ffcetcskpwlvg 18 (26)
T 1loi_A 6 FFCETCSKPWLVG 18 (26)
T ss_dssp HHHHTSSCTTGGG
T ss_pred HHHHhcCCchhhh
Confidence 4677888887543
No 172
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.35 E-value=35 Score=19.57 Aligned_cols=35 Identities=20% Similarity=0.745 Sum_probs=24.5
Q ss_pred CCccccccccccccccccccccCCCCChhHHHHHHHHH
Q 035729 21 GSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYI 58 (208)
Q Consensus 21 ~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~ 58 (208)
..-+.|..|...+.. ..| ...=+..||..|..+.+
T Consensus 29 ~~CF~C~~C~~~L~~-~~~--~~~~~~~yC~~cy~~~f 63 (69)
T 2cur_A 29 ADCFVCVTCSKKLAG-QRF--TAVEDQYYCVDCYKNFV 63 (69)
T ss_dssp TTTTBCTTTCCBCTT-SCE--EECSSCEEEHHHHHHHH
T ss_pred cCcCEECCCCCCCCC-Ccc--EeECCEEECHHHhHHHh
Confidence 445789999888853 334 23447899999987655
No 173
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=24.24 E-value=70 Score=20.90 Aligned_cols=40 Identities=13% Similarity=0.397 Sum_probs=28.3
Q ss_pred CCccccccccccccccccccccCCCCChhHHHHHHHHHHHHh
Q 035729 21 GSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQVMV 62 (208)
Q Consensus 21 ~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~~~i 62 (208)
..-|.|..|-..+...+.| ...=+..||..|..+.+...-
T Consensus 34 ~~CF~C~~C~~~L~~g~~f--~~~~g~~yC~~cy~~~~~~~~ 73 (123)
T 2l3k_A 34 LECFKCAACQKHFSVGDRY--LLINSDIVCEQDIYEWTKING 73 (123)
T ss_dssp TTTCBCTTTCCBCCTTCEE--EECSSSEEEGGGHHHHHHHHT
T ss_pred cccCccccCCCCCCCCCcE--EeeCCEEEcHHHhHHHhcccc
Confidence 4567889998888544445 234478999999988776543
No 174
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=24.24 E-value=49 Score=19.09 Aligned_cols=36 Identities=14% Similarity=0.314 Sum_probs=25.2
Q ss_pred ccCCccccCCCCCcccccCCCChhHHHHHHHHHHhhhh
Q 035729 70 IECPGLNCQKNLDPFSCKPMIPSSLFSKWCDLLCEDYV 107 (208)
Q Consensus 70 i~CP~~~C~~~l~~~~i~~~l~~~~~~~~~~~~~~~~~ 107 (208)
-.||. |+.......-..+-+++-+.+|...+..++.
T Consensus 18 ~~CP~--CG~~t~~ahParfSP~Dky~~yR~~lKk~~~ 53 (60)
T 2aus_D 18 ETCPV--CGEKTKVAHPPRFSPEDPYGEYRRRLKRELL 53 (60)
T ss_dssp SBCTT--TCSBCEESSCCCCCSCCTTHHHHHHHHHHHT
T ss_pred ccCcC--CCCccCCCCCCCCCCCCchHHHHHHHHHHhc
Confidence 35887 8876555555666677888889877776643
No 175
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=24.15 E-value=86 Score=19.51 Aligned_cols=34 Identities=24% Similarity=0.559 Sum_probs=23.6
Q ss_pred CccccccccccccccccccccCCCCChhHHHHHHHH
Q 035729 22 SSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKY 57 (208)
Q Consensus 22 ~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~ 57 (208)
....|.||-.-- ..+.+ .-..|+-+|...||++.
T Consensus 14 ~D~~C~VC~~~t-~~~l~-pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEVWT-AESLF-PCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCCCC-SSCCS-SCSSSSSCCCHHHHHHH
T ss_pred CCcccCcccccc-cccee-ccccccccccHhhcccc
Confidence 456899987433 33222 35568999999999985
No 176
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=24.04 E-value=56 Score=18.44 Aligned_cols=22 Identities=14% Similarity=0.436 Sum_probs=15.5
Q ss_pred CcccCCCCCceeEecCCCCceEeC
Q 035729 182 KWARCPGCGHCVQRKNGCHVMQDS 205 (208)
Q Consensus 182 ~~k~CP~C~~~i~k~~GCnhm~C~ 205 (208)
.+-.||.|+.+++..+ ..+.|.
T Consensus 9 ~iL~CP~c~~~L~~~~--~~L~C~ 30 (56)
T 2kpi_A 9 EILACPACHAPLEERD--AELICT 30 (56)
T ss_dssp TSCCCSSSCSCEEEET--TEEEEC
T ss_pred hheeCCCCCCcceecC--CEEEcC
Confidence 4557899988877665 556665
No 177
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=23.98 E-value=36 Score=17.85 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=17.1
Q ss_pred chhccccCcCcCCCCCChhhh
Q 035729 144 HWFCFRCKLKWHGGYHCEESG 164 (208)
Q Consensus 144 ~~~C~~C~~~~H~~~~C~~~~ 164 (208)
...|+.|+..-|.-..|....
T Consensus 10 ~~~C~~Cgk~GH~ardCP~~~ 30 (40)
T 1a6b_B 10 RDQCAYCKEKGHWAKDCPKKP 30 (40)
T ss_dssp SSSCSSSCCTTCCTTSCSSSC
T ss_pred CCeeeECCCCCcchhhCcCCc
Confidence 456899999999999998644
No 178
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=23.93 E-value=11 Score=26.93 Aligned_cols=47 Identities=17% Similarity=0.404 Sum_probs=27.6
Q ss_pred hhccccCcCcCCC-CCChhhhcccccchHHHHHHHHhCCcccCCCCCceeE
Q 035729 145 WFCFRCKLKWHGG-YHCEESGNLRDRNDIAFGQLAERMKWARCPGCGHCVQ 194 (208)
Q Consensus 145 ~~C~~C~~~~H~~-~~C~~~~~~~~~~~~~~~~~~~~~~~k~CP~C~~~i~ 194 (208)
.||..|...-|.. ..|.+... +-...+.++..+...+.|++||..-.
T Consensus 125 wyc~~c~~~~~e~~f~~~dl~~---ql~~~~~~f~~~~e~rtc~~CG~~~~ 172 (176)
T 1zvf_A 125 WYCSHCRQVVHESELQMLDLGT---QVKEAILDFENDVEKRTCFHCKTLNY 172 (176)
T ss_dssp EECTTTCCEEEEEECCSSSTTH---HHHHHHHHHHTCHHHHBCTTTCCBCC
T ss_pred EEcCCCCCEEEEEEEEEechhH---hHHHHHHHHhcChhhccCCCCCCcCC
Confidence 3444455544432 35543222 22345667777788899999998643
No 179
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=23.79 E-value=58 Score=16.38 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=15.4
Q ss_pred CCcccCCCCCceeEe--cCCCCce
Q 035729 181 MKWARCPGCGHCVQR--KNGCHVM 202 (208)
Q Consensus 181 ~~~k~CP~C~~~i~k--~~GCnhm 202 (208)
..+-.|+.|+..|+- ++|-..+
T Consensus 4 ~~fY~C~~CGnivev~~~g~~~l~ 27 (36)
T 1dxg_A 4 GDVYKCELCGQVVKVLEEGGGTLV 27 (36)
T ss_dssp TCEEECTTTCCEEEEEECCSSCEE
T ss_pred ccEEEcCCCCcEEEEEeCCCcCEE
Confidence 355689999999996 5554433
No 180
>1pg5_B Aspartate carbamoyltransferase regulatory chain; 2.60A {Sulfolobus acidocaldarius} SCOP: d.58.2.1 g.41.7.1 PDB: 2be9_B*
Probab=23.67 E-value=24 Score=25.00 Aligned_cols=10 Identities=40% Similarity=0.823 Sum_probs=8.6
Q ss_pred CcccCccccc
Q 035729 111 ERSYCPNRNC 120 (208)
Q Consensus 111 ~~~~Cp~~~C 120 (208)
+...||||.|
T Consensus 113 gvl~C~Np~C 122 (168)
T 1pg5_B 113 GILKCPNPYC 122 (168)
T ss_dssp SSSCCSCTTB
T ss_pred CeEEcCCCCc
Confidence 4678999999
No 181
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=22.63 E-value=23 Score=25.38 Aligned_cols=29 Identities=21% Similarity=0.546 Sum_probs=20.0
Q ss_pred cccCcccccccchhcchhhcCCCCcccCccccch
Q 035729 112 RSYCPNRNCMALVVNECERKGRMKKAQCPNCKHW 145 (208)
Q Consensus 112 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 145 (208)
+.-||+.+|+..+.... ...+.|+.|+..
T Consensus 43 Y~aC~~~~CnKKv~~~~-----~g~~~CekC~~~ 71 (181)
T 1l1o_C 43 YQACPTQDCNKKVIDQQ-----NGLYRCEKCDTE 71 (181)
T ss_dssp EEBCCSTTCCCBCEEET-----TTEEEETTTTEE
T ss_pred ECCCCchhcCCccccCC-----CCeEECCCCCCc
Confidence 56799777999876432 246788888654
No 182
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=22.63 E-value=3.4 Score=19.41 Aligned_cols=18 Identities=22% Similarity=0.610 Sum_probs=12.8
Q ss_pred ccccCCccccCCCCCccccc
Q 035729 68 AKIECPGLNCQKNLDPFSCK 87 (208)
Q Consensus 68 ~~i~CP~~~C~~~l~~~~i~ 87 (208)
+.+.||. |.+.++...|.
T Consensus 5 f~vqcpv--cqq~mpaahin 22 (29)
T 3vhs_A 5 FQVQCPV--CQQMMPAAHIN 22 (29)
T ss_dssp CEEECTT--TCCEEEGGGHH
T ss_pred eeeeChH--HHHhCcHHHHH
Confidence 5688999 98876655544
No 183
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=22.37 E-value=34 Score=22.26 Aligned_cols=14 Identities=7% Similarity=0.169 Sum_probs=7.2
Q ss_pred CCCCcccccCCCCh
Q 035729 79 KNLDPFSCKPMIPS 92 (208)
Q Consensus 79 ~~l~~~~i~~~l~~ 92 (208)
.+++..+|...++.
T Consensus 23 ~plta~ei~~~l~i 36 (105)
T 2gmg_A 23 GDYSPSELARILDM 36 (105)
T ss_dssp SCBCTTHHHHSSCC
T ss_pred CCCCHHHHHHHhCC
Confidence 34555555554443
No 184
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.36 E-value=51 Score=19.54 Aligned_cols=38 Identities=13% Similarity=0.407 Sum_probs=26.2
Q ss_pred CCccccccccccccccccccccCCCCChhHHHHHHHHHH
Q 035729 21 GSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQ 59 (208)
Q Consensus 21 ~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~ 59 (208)
..-+.|..|...+...+.|. +..=+..||..|..+.+.
T Consensus 39 ~~CF~C~~C~~~L~~g~~f~-~~~~~~~~C~~c~~~~~~ 76 (81)
T 1x6a_A 39 PECFACMSCKVIIEDGDAYA-LVQHATLYCGKCHNEVVS 76 (81)
T ss_dssp TTSCBCTTTCCBCCTTSCEE-ECSSSCEEEHHHHHHHHC
T ss_pred cccCCccCCCCccCCCCcEE-EeeCCEEECHHHHHHHhc
Confidence 44578899988885444441 234578999999877664
No 185
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=22.05 E-value=13 Score=26.64 Aligned_cols=48 Identities=21% Similarity=0.412 Sum_probs=28.2
Q ss_pred chhccccCcCcCCC-CCChhhhcccccchHHHHHHHHhCCcccCCCCCceeE
Q 035729 144 HWFCFRCKLKWHGG-YHCEESGNLRDRNDIAFGQLAERMKWARCPGCGHCVQ 194 (208)
Q Consensus 144 ~~~C~~C~~~~H~~-~~C~~~~~~~~~~~~~~~~~~~~~~~k~CP~C~~~i~ 194 (208)
..||..|...-|.. ..|.+... +-...+.++..+...+.|++||..-.
T Consensus 122 ~wyc~~c~~~~~e~~f~~~dl~~---~l~~~~~~f~~~~~~rtc~~Cg~~~~ 170 (174)
T 1yfu_A 122 EWYCDACGHLVHRVEVQLKSIVT---DLPPLFESFYASEDKRRCPHCGQVHP 170 (174)
T ss_dssp EEECTTTCCEEEEEEECCSCHHH---HSHHHHHHHHTCHHHHBCTTTCCBCC
T ss_pred EEEcCCCCCEEEEEEEEEechhH---hHHHHHHHHhcCHhhccCCCCCCcCC
Confidence 33444455544432 24543322 22346677777788899999998643
No 186
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.73 E-value=35 Score=19.59 Aligned_cols=35 Identities=17% Similarity=0.627 Sum_probs=23.5
Q ss_pred CCccccccccccccccccccccCCCCChhHHHHHHHHH
Q 035729 21 GSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYI 58 (208)
Q Consensus 21 ~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~ 58 (208)
..-+.|..|...+.. ..| ...=+..||..|..+.+
T Consensus 29 ~~CF~C~~C~~~L~~-~~~--~~~~~~~yC~~cy~~~f 63 (70)
T 2d8z_A 29 KECFVCTACRKQLSG-QRF--TARDDFAYCLNCFCDLY 63 (70)
T ss_dssp TTTSBCSSSCCBCTT-SCC--EESSSSEECHHHHHHHT
T ss_pred CCCCccCCCCCcCCc-Cce--EeeCCeEECHHHHHHHh
Confidence 345788888888843 334 23457889999986543
No 187
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=21.71 E-value=47 Score=25.37 Aligned_cols=23 Identities=30% Similarity=0.545 Sum_probs=17.0
Q ss_pred cccCCCCCceeEec--CCCCceEeC
Q 035729 183 WARCPGCGHCVQRK--NGCHVMQDS 205 (208)
Q Consensus 183 ~k~CP~C~~~i~k~--~GCnhm~C~ 205 (208)
.++||.|+.+|++. +|=.--.|+
T Consensus 235 g~pC~~CG~~I~~~~~~gR~t~~CP 259 (266)
T 1ee8_A 235 GLPCPACGRPVERRVVAGRGTHFCP 259 (266)
T ss_dssp TSBCTTTCCBCEEEESSSCEEEECT
T ss_pred CCCCCCCCCEeeEEEECCCceEECC
Confidence 37899999999974 565555555
No 188
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=21.63 E-value=19 Score=29.30 Aligned_cols=39 Identities=13% Similarity=0.313 Sum_probs=0.0
Q ss_pred CCccccccccccccccccccccCCCCChhHHHHHHHHHH
Q 035729 21 GSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQ 59 (208)
Q Consensus 21 ~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~ 59 (208)
.....|.+|...|.....-..-..||++||..|....+.
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~ 411 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYP 411 (434)
T ss_dssp ---------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeee
Confidence 335689999998854422223457999999999886553
No 189
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.59 E-value=35 Score=20.89 Aligned_cols=32 Identities=28% Similarity=0.630 Sum_probs=17.6
Q ss_pred cccccccccccccccccccCCCCChhHHHHHHHHH
Q 035729 24 FTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYI 58 (208)
Q Consensus 24 ~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~ 58 (208)
|.|..|-..+.. ..| ...=+..||..|..+.+
T Consensus 52 F~C~~C~~~L~~-~~f--~~~~g~~yC~~cy~~~f 83 (90)
T 2dar_A 52 FNCAHCKNTMAY-IGF--VEEKGALYCELCYEKFF 83 (90)
T ss_dssp CBCSSSCCBCSS-SCB--EESSSCEECHHHHHHHT
T ss_pred CccCCCCCCCCC-CEe--EeECCEEECHHHHHHHc
Confidence 455555555532 223 22346678888876544
No 190
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.59 E-value=31 Score=19.91 Aligned_cols=36 Identities=22% Similarity=0.539 Sum_probs=25.6
Q ss_pred CCccccccccccccccccccccCCCCChhHHHHHHHHHH
Q 035729 21 GSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKYIQ 59 (208)
Q Consensus 21 ~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~~~ 59 (208)
..-+.|..|-..+... .| ...=+..||..|..+.+.
T Consensus 29 ~~CF~C~~C~~~L~~~-~f--~~~~g~~yC~~c~~~~~~ 64 (70)
T 2d8x_A 29 PECFRCDLCQEVLADI-GF--VKNAGRHLCRPCHNREKA 64 (70)
T ss_dssp TTTSBCSSSCCBCSSS-CC--EEETTEEECHHHHHHHHC
T ss_pred ccCCEeCCCCCcCCCC-cc--EeECCeEECHHHhhhhcC
Confidence 4557899998888554 34 234578899999887654
No 191
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.26 E-value=29 Score=14.88 Aligned_cols=10 Identities=20% Similarity=0.484 Sum_probs=5.3
Q ss_pred ccCccccchh
Q 035729 137 AQCPNCKHWF 146 (208)
Q Consensus 137 ~~C~~C~~~~ 146 (208)
+.|+.|+..|
T Consensus 4 ~~C~~C~k~f 13 (27)
T 2kvh_A 4 FSCSLCPQRS 13 (27)
T ss_dssp EECSSSSCEE
T ss_pred ccCCCcChhh
Confidence 4565555544
No 192
>2cs8_A KIAA0535 protein; ST18, zinc-finger, C2HC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.14 E-value=1.1e+02 Score=19.90 Aligned_cols=12 Identities=25% Similarity=0.994 Sum_probs=10.2
Q ss_pred ccccCCccccCC
Q 035729 68 AKIECPGLNCQK 79 (208)
Q Consensus 68 ~~i~CP~~~C~~ 79 (208)
..++||.++|..
T Consensus 8 ~~~~CPtpGC~G 19 (108)
T 2cs8_A 8 PELKCPVIGCDG 19 (108)
T ss_dssp CCCCCCSTTCCS
T ss_pred CCccCCCCCccc
Confidence 458999999996
No 193
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.14 E-value=16 Score=21.62 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=23.4
Q ss_pred CCccccccccccccccccccccCCCCChhHHHHHHHH
Q 035729 21 GSSFTCEICIEPMAANKKFKNKNLCTHPFCQECIAKY 57 (208)
Q Consensus 21 ~~~~~C~iC~~~~~~~~~~~~~~~C~H~~C~~Cl~~~ 57 (208)
..-+.|..|...+.....| ...=+..||..|....
T Consensus 29 ~~CF~C~~C~~~L~~~~~f--~~~~~~~yC~~C~~~~ 63 (73)
T 1wig_A 29 PSCALCVRCGQMFAEGEEM--YLQGSSIWHPACRQAA 63 (73)
T ss_dssp TTTSCCSSSCCCCCSSCCC--EEETTEEECTTHHHHT
T ss_pred CCcCEeCCCCCCCCCCCee--EeeCCEEEChHHChHh
Confidence 4457888898888644444 2334678999997653
No 194
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=20.66 E-value=41 Score=25.84 Aligned_cols=22 Identities=18% Similarity=0.396 Sum_probs=16.9
Q ss_pred ccCCCCCceeEe--cCCCCceEeC
Q 035729 184 ARCPGCGHCVQR--KNGCHVMQDS 205 (208)
Q Consensus 184 k~CP~C~~~i~k--~~GCnhm~C~ 205 (208)
++||.|+.+|++ .+|=.--.|+
T Consensus 246 ~pC~~CG~~I~~~~~~gR~t~~CP 269 (273)
T 3u6p_A 246 NPCKRCGTPIEKTVVAGRGTHYCP 269 (273)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECT
T ss_pred CCCCCCCCeEEEEEECCCCeEECC
Confidence 689999999997 4565555555
No 195
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=20.29 E-value=42 Score=25.71 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=16.8
Q ss_pred ccCCCCCceeEec--CCCCceEeC
Q 035729 184 ARCPGCGHCVQRK--NGCHVMQDS 205 (208)
Q Consensus 184 k~CP~C~~~i~k~--~GCnhm~C~ 205 (208)
++||.|+.+|++. +|=.-..|+
T Consensus 243 ~pC~~CG~~I~~~~~~gR~t~~CP 266 (271)
T 2xzf_A 243 EKCSRCGAEIQKIKVAGRGTHFCP 266 (271)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECT
T ss_pred CCCCCCCCEeeEEEECCCceEECC
Confidence 7899999999974 565555555
No 196
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=20.28 E-value=32 Score=14.57 Aligned_cols=9 Identities=33% Similarity=0.940 Sum_probs=4.3
Q ss_pred cCccccchh
Q 035729 138 QCPNCKHWF 146 (208)
Q Consensus 138 ~C~~C~~~~ 146 (208)
.|+.|+..|
T Consensus 3 ~C~~C~k~f 11 (27)
T 1znf_A 3 KCGLCERSF 11 (27)
T ss_dssp BCSSSCCBC
T ss_pred cCCCCCCcC
Confidence 355555444
No 197
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=20.17 E-value=43 Score=23.34 Aligned_cols=14 Identities=36% Similarity=0.700 Sum_probs=11.0
Q ss_pred cccCCCCCceeEec
Q 035729 183 WARCPGCGHCVQRK 196 (208)
Q Consensus 183 ~k~CP~C~~~i~k~ 196 (208)
...||.||..+.|.
T Consensus 148 ~~~Cp~CG~~~~~~ 161 (165)
T 2lcq_A 148 GGVCPDCGSKVKLI 161 (165)
T ss_dssp GGBCTTTCCBEEEC
T ss_pred CCcCCCCCCcceeC
Confidence 35899999998764
No 198
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=20.01 E-value=37 Score=29.73 Aligned_cols=60 Identities=25% Similarity=0.541 Sum_probs=40.9
Q ss_pred CCCccccccccccccccccc---cccCCCCC-----------------------hhHHHHHHHHHHHHhhcCCCccccCC
Q 035729 20 NGSSFTCEICIEPMAANKKF---KNKNLCTH-----------------------PFCQECIAKYIQVMVQDNNTAKIECP 73 (208)
Q Consensus 20 ~~~~~~C~iC~~~~~~~~~~---~~~~~C~H-----------------------~~C~~Cl~~~~~~~i~~~~~~~i~CP 73 (208)
.....+|+-|+.++.++.+. ..+..|.| .+|.+|.+.|-...-..-+..++.||
T Consensus 14 ~pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp 93 (657)
T 3ttc_A 14 VPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACP 93 (657)
T ss_dssp CCCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCT
T ss_pred CCchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCc
Confidence 34567999999998655321 12444532 48999999998654333345689999
Q ss_pred ccccCCCC
Q 035729 74 GLNCQKNL 81 (208)
Q Consensus 74 ~~~C~~~l 81 (208)
. |+-.+
T Consensus 94 ~--CGP~l 99 (657)
T 3ttc_A 94 E--CGPYL 99 (657)
T ss_dssp T--TSCCE
T ss_pred c--cCccc
Confidence 9 99766
Done!