BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035730
(309 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GME|A Chain A, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
pdb|1GME|B Chain B, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
pdb|1GME|C Chain C, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
pdb|1GME|D Chain D, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
Length = 151
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 53/98 (54%), Gaps = 12/98 (12%)
Query: 24 EWLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGER----QLGDNKWSRCNQA--- 76
+W + PE ++ LP KE++++ + +V V+GER + ++KW R ++
Sbjct: 47 DWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLV-VSGERTKEKEDKNDKWHRVERSSGK 105
Query: 77 ----FPIPSNCKIDKIHAKWNNAILTVTMPKETITQPQ 110
F + + K++++ A N +LTVT+PK + +P+
Sbjct: 106 FVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPE 143
>pdb|2BYU|A Chain A, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|B Chain B, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|C Chain C, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|D Chain D, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|E Chain E, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|F Chain F, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|G Chain G, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|H Chain H, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|I Chain I, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|J Chain J, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|K Chain K, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|L Chain L, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
Length = 101
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 12/94 (12%)
Query: 24 EWLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGER----QLGDNKWSRCNQA--- 76
+W + PE ++ LP KE++++ + +V V+GER + ++KW R ++
Sbjct: 5 DWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLV-VSGERTKEKEDKNDKWHRVERSSGK 63
Query: 77 ----FPIPSNCKIDKIHAKWNNAILTVTMPKETI 106
F + + K++++ A N +LTVT+PK I
Sbjct: 64 FVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAAI 97
>pdb|1DZG|I Chain I, N135q-S380c-Antithrombin-Iii
Length = 432
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 22 MSEWLDEPENNILLVHLPDFTKE 44
+ EWLDE E +L+VH+P F E
Sbjct: 304 LQEWLDELEEMMLVVHMPRFRIE 326
>pdb|2HIJ|I Chain I, Crystal Structure Of P14 Alanine Variant Of Antithrombin
Length = 432
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 22 MSEWLDEPENNILLVHLPDFTKE 44
+ EWLDE E +L+VH+P F E
Sbjct: 304 LQEWLDELEEMMLVVHMPRFRIE 326
>pdb|4EB1|I Chain I, Hyperstable In-Frame Insertion Variant Of Antithrombin
Length = 440
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 22 MSEWLDEPENNILLVHLPDFTKE 44
+ EWLDE E +L+VH+P F E
Sbjct: 312 LQEWLDELEEMMLVVHMPRFRIE 334
>pdb|2B4X|I Chain I, Crystal Structure Of Antithrombin-Iii
Length = 427
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 22 MSEWLDEPENNILLVHLPDFTKE 44
+ EWLDE E +L+VH+P F E
Sbjct: 300 LQEWLDELEEMMLVVHMPRFRIE 322
>pdb|1DZH|I Chain I, P14-Fluorescein-N135q-S380c-Antithrombin-Iii
Length = 432
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 22 MSEWLDEPENNILLVHLPDFTKE 44
+ EWLDE E +L+VH+P F E
Sbjct: 304 LQEWLDELEEMMLVVHMPRFRIE 326
>pdb|2B4X|L Chain L, Crystal Structure Of Antithrombin-Iii
Length = 427
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 22 MSEWLDEPENNILLVHLPDFTKE 44
+ EWLDE E +L+VH+P F E
Sbjct: 300 LQEWLDELEEMMLVVHMPRFRIE 322
>pdb|1ATH|A Chain A, The Intact And Cleaved Human Antithrombin Iii Complex As A
Model For Serpin-Proteinase Interactions
pdb|1ANT|L Chain L, Biological Implications Of A 3 Angstroms Structure Of
Dimeric Antithrombin
pdb|1ANT|I Chain I, Biological Implications Of A 3 Angstroms Structure Of
Dimeric Antithrombin
pdb|2ANT|L Chain L, The 2.6 A Structure Of Antithrombin Indicates A
Conformational Change At The Heparin Binding Site
pdb|2ANT|I Chain I, The 2.6 A Structure Of Antithrombin Indicates A
Conformational Change At The Heparin Binding Site
pdb|1AZX|I Chain I, AntithrombinPENTASACCHARIDE COMPLEX
pdb|1AZX|L Chain L, AntithrombinPENTASACCHARIDE COMPLEX
pdb|1BR8|L Chain L, Implications For Function And Therapy Of A 2.9a Structure
Of Binary-Complexed Antithrombin
pdb|1BR8|I Chain I, Implications For Function And Therapy Of A 2.9a Structure
Of Binary-Complexed Antithrombin
pdb|1E03|L Chain L, Plasma Alpha Antithrombin-Iii And Pentasaccharide
pdb|1E03|I Chain I, Plasma Alpha Antithrombin-Iii And Pentasaccharide
pdb|1E04|L Chain L, Plasma Beta Antithrombin-Iii
pdb|1E04|I Chain I, Plasma Beta Antithrombin-Iii
pdb|1E05|L Chain L, Plasma Alpha Antithrombin-Iii
pdb|1E05|I Chain I, Plasma Alpha Antithrombin-Iii
pdb|1DZG|L Chain L, N135q-S380c-Antithrombin-Iii
pdb|1DZH|L Chain L, P14-Fluorescein-N135q-S380c-Antithrombin-Iii
pdb|1JVQ|L Chain L, Crystal Structure At 2.6a Of The Ternary Complex Between
Antithrombin, A P14-P8 Reactive Loop Peptide, And An
Exogenous Tetrapeptide
pdb|1JVQ|I Chain I, Crystal Structure At 2.6a Of The Ternary Complex Between
Antithrombin, A P14-P8 Reactive Loop Peptide, And An
Exogenous Tetrapeptide
pdb|1LK6|L Chain L, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
pdb|1LK6|I Chain I, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
pdb|1NQ9|I Chain I, Crystal Structure Of Antithrombin In The
Pentasaccharide-Bound Intermediate State
pdb|1NQ9|L Chain L, Crystal Structure Of Antithrombin In The
Pentasaccharide-Bound Intermediate State
pdb|1OYH|L Chain L, Crystal Structure Of P13 Alanine Variant Of Antithrombin
pdb|1SR5|A Chain A, Antithrombin-Anhydrothrombin-Heparin Ternary Complex
Structure
pdb|1R1L|L Chain L, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
(Formyl-Norleucine-Lf)
pdb|1R1L|I Chain I, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
(Formyl-Norleucine-Lf)
pdb|2BEH|L Chain L, Crystal Structure Of Antithrombin Variant
S137a/v317c/t401c With Plasma Latent Antithrombin
pdb|2HIJ|L Chain L, Crystal Structure Of P14 Alanine Variant Of Antithrombin
pdb|1ATH|B Chain B, The Intact And Cleaved Human Antithrombin Iii Complex As A
Model For Serpin-Proteinase Interactions
pdb|2ZNH|A Chain A, Crystal Structure Of A Domain-Swapped Serpin Dimer
pdb|2ZNH|B Chain B, Crystal Structure Of A Domain-Swapped Serpin Dimer
pdb|3EVJ|I Chain I, Intermediate Structure Of Antithrombin Bound To The
Natural Pentasaccharide
pdb|3EVJ|L Chain L, Intermediate Structure Of Antithrombin Bound To The
Natural Pentasaccharide
pdb|4EB1|L Chain L, Hyperstable In-Frame Insertion Variant Of Antithrombin
Length = 432
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 22 MSEWLDEPENNILLVHLPDFTKE 44
+ EWLDE E +L+VH+P F E
Sbjct: 304 LQEWLDELEEMMLVVHMPRFRIE 326
>pdb|3KCG|I Chain I, Crystal Structure Of The Antithrombin-Factor Ixa-
Pentasaccharide Complex
Length = 432
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 22 MSEWLDEPENNILLVHLPDFTKE 44
+ EWLDE E +L+VH+P F E
Sbjct: 304 LQEWLDELEEMMLVVHMPRFRIE 326
>pdb|2GD4|I Chain I, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
pdb|2GD4|C Chain C, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
Length = 443
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 22 MSEWLDEPENNILLVHLPDFTKE 44
+ EWLDE E +L+VH+P F E
Sbjct: 315 LQEWLDELEEMMLVVHMPRFRIE 337
>pdb|1OYH|I Chain I, Crystal Structure Of P13 Alanine Variant Of Antithrombin
Length = 432
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 22 MSEWLDEPENNILLVHLPDFTKE 44
+ EWLDE E +L+VH+P F E
Sbjct: 304 LQEWLDELEEMMLVVHMPRFRIE 326
>pdb|1TB6|I Chain I, 2.5a Crystal Structure Of The
Antithrombin-Thrombin-Heparin Ternary Complex
pdb|1T1F|A Chain A, Crystal Structure Of Native Antithrombin In Its Monomeric
Form
pdb|1T1F|B Chain B, Crystal Structure Of Native Antithrombin In Its Monomeric
Form
pdb|1T1F|C Chain C, Crystal Structure Of Native Antithrombin In Its Monomeric
Form
pdb|2BEH|I Chain I, Crystal Structure Of Antithrombin Variant
S137a/v317c/t401c With Plasma Latent Antithrombin
pdb|2B5T|I Chain I, 2.1 Angstrom Structure Of A Nonproductive Complex Between
Antithrombin, Synthetic Heparin Mimetic Sr123781 And Two
S195a Thrombin Molecules
Length = 432
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 22 MSEWLDEPENNILLVHLPDFTKE 44
+ EWLDE E +L VH+P F E
Sbjct: 304 LQEWLDELEEMMLCVHMPRFRIE 326
>pdb|1ATT|A Chain A, Crystal Structure Of Cleaved Bovine Antithrombin Iii At
3.2 Angstroms Resolution
pdb|1ATT|B Chain B, Crystal Structure Of Cleaved Bovine Antithrombin Iii At
3.2 Angstroms Resolution
Length = 429
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 22 MSEWLDEPENNILLVHLPDFTKE 44
+ EWLDE +L+VH+P F E
Sbjct: 301 LQEWLDELTETLLVVHMPRFRIE 323
>pdb|2EGZ|A Chain A, Crystal Structure Of The 3-Dehydroquinate Dehydratase From
Aquifex Aeolicus Vf5
pdb|2EGZ|C Chain C, Crystal Structure Of The 3-Dehydroquinate Dehydratase From
Aquifex Aeolicus Vf5
pdb|2YSW|A Chain A, Crystal Structure Of The 3-Dehydroquinate Dehydratase From
Aquifex Aeolicus Vf5
pdb|2YSW|B Chain B, Crystal Structure Of The 3-Dehydroquinate Dehydratase From
Aquifex Aeolicus Vf5
pdb|2YSW|C Chain C, Crystal Structure Of The 3-Dehydroquinate Dehydratase From
Aquifex Aeolicus Vf5
Length = 219
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 3 KTPQIGNKSTEN---LFEDFHPMSEWLD-EPENNILLVHLPDFTKE 44
++P+ G + +N LFE+ P+S++ D E + LLV L + TKE
Sbjct: 61 RSPEEGGREVKNREELFEELSPLSDYTDIELSSRGLLVKLYNITKE 106
>pdb|3TG9|A Chain A, The Crystal Structure Of Penicillin Binding Protein From
Bacillus Halodurans
pdb|3TG9|B Chain B, The Crystal Structure Of Penicillin Binding Protein From
Bacillus Halodurans
Length = 356
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 7/33 (21%)
Query: 21 PMSEWLDEPENNILLVHL-------PDFTKEQI 46
P+S+WLD P N+ + HL PD+ E+I
Sbjct: 79 PLSDWLDAPFPNVTIHHLLTHTSGVPDYFDEEI 111
>pdb|2PPL|A Chain A, Human Pancreatic Lipase-Related Protein 1
Length = 485
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 85 IDKIHAKWNNAILTVTMPKETITQPQPRKEEPKTTQ 120
IDK+ WNN ++ T+PK T+ +K E KT
Sbjct: 421 IDKVKFLWNNNVINPTLPKVGATKITVQKGEEKTVY 456
>pdb|2H50|A Chain A, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|B Chain B, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|C Chain C, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|D Chain D, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|E Chain E, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|F Chain F, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|G Chain G, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|H Chain H, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|I Chain I, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|J Chain J, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|K Chain K, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|L Chain L, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|M Chain M, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|N Chain N, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|O Chain O, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|P Chain P, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|Q Chain Q, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|R Chain R, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|S Chain S, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|T Chain T, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|U Chain U, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|V Chain V, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|W Chain W, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|X Chain X, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|A Chain A, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|B Chain B, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|C Chain C, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|D Chain D, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|E Chain E, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|F Chain F, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|G Chain G, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|H Chain H, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|I Chain I, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|J Chain J, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|K Chain K, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|L Chain L, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|M Chain M, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|N Chain N, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|O Chain O, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|P Chain P, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|Q Chain Q, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|R Chain R, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|S Chain S, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|T Chain T, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|U Chain U, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|V Chain V, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|W Chain W, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|X Chain X, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
Length = 93
Score = 28.5 bits (62), Expect = 5.6, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 10/90 (11%)
Query: 24 EWLDEPENNILLVHLPDFTKEQIRITCVRSSRIV---RVTGERQLGDNKWSRCNQA---- 76
+W + PE ++ LP KE++++ + +V T E++ ++KW R ++
Sbjct: 4 DWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKF 63
Query: 77 ---FPIPSNCKIDKIHAKWNNAILTVTMPK 103
F + + K++++ A N +LTVT+PK
Sbjct: 64 VRRFRLLEDAKVEEVKAGLENGVLTVTVPK 93
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In
Pre-power Stroke State
Length = 995
Score = 27.7 bits (60), Expect = 9.3, Method: Composition-based stats.
Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 138 QQVSASQKAADEEPKSSKDFQQAAASPKAADKEPKTSKDFQQITEMQNEVKSNIHGEKKE 197
+Q S + + +S + F A K +K PK ++ ++ + N +++ + K+E
Sbjct: 777 KQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPK-GQEVSELEAIYNSLQTKLRLIKRE 835
Query: 198 DGKSPDALTAQKSDETTFPKDAVSMNQTDKTN-EVAKAKKIDQMTQK 243
+P LT + D T + + E+ + KKI + QK
Sbjct: 836 PFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQK 882
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.305 0.121 0.334
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,365,104
Number of Sequences: 62578
Number of extensions: 312729
Number of successful extensions: 464
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 443
Number of HSP's gapped (non-prelim): 34
length of query: 309
length of database: 14,973,337
effective HSP length: 99
effective length of query: 210
effective length of database: 8,778,115
effective search space: 1843404150
effective search space used: 1843404150
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 51 (24.3 bits)