Query 035730
Match_columns 309
No_of_seqs 160 out of 1225
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 05:52:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035730.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035730hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0071 IbpA Molecular chapero 99.9 8.3E-21 1.8E-25 161.6 13.0 97 18-121 38-145 (146)
2 PRK11597 heat shock chaperone 99.8 2E-20 4.4E-25 161.2 12.6 97 18-123 30-136 (142)
3 PRK10743 heat shock protein Ib 99.8 5.1E-20 1.1E-24 157.5 12.1 92 21-121 35-136 (137)
4 cd06497 ACD_alphaA-crystallin_ 99.8 3.6E-20 7.8E-25 146.4 10.3 78 24-103 4-86 (86)
5 cd06472 ACD_ScHsp26_like Alpha 99.8 6.4E-20 1.4E-24 144.6 11.1 81 22-103 1-92 (92)
6 cd06479 ACD_HspB7_like Alpha c 99.8 6.4E-20 1.4E-24 144.4 9.7 78 24-103 2-81 (81)
7 cd06478 ACD_HspB4-5-6 Alpha-cr 99.8 9.1E-20 2E-24 142.9 10.4 78 24-103 1-83 (83)
8 cd06471 ACD_LpsHSP_like Group 99.8 1.2E-19 2.5E-24 142.6 10.2 80 21-103 1-93 (93)
9 PF00011 HSP20: Hsp20/alpha cr 99.8 5.7E-19 1.2E-23 139.6 13.0 92 24-121 1-101 (102)
10 cd06498 ACD_alphaB-crystallin_ 99.8 2.1E-19 4.6E-24 141.6 10.2 78 25-104 2-84 (84)
11 cd06476 ACD_HspB2_like Alpha c 99.8 5.6E-19 1.2E-23 139.3 10.2 77 25-103 2-83 (83)
12 cd06475 ACD_HspB1_like Alpha c 99.8 7E-19 1.5E-23 139.1 10.0 78 23-102 3-85 (86)
13 cd06470 ACD_IbpA-B_like Alpha- 99.8 1.6E-18 3.5E-23 137.0 11.1 79 21-103 1-90 (90)
14 cd06526 metazoan_ACD Alpha-cry 99.8 3.9E-18 8.6E-23 132.3 9.4 74 28-103 5-83 (83)
15 cd06477 ACD_HspB3_Like Alpha c 99.7 9.5E-18 2.1E-22 132.8 9.9 75 26-102 3-82 (83)
16 cd06481 ACD_HspB9_like Alpha c 99.7 8.1E-18 1.8E-22 133.3 9.3 75 27-103 4-87 (87)
17 cd06464 ACD_sHsps-like Alpha-c 99.7 2.2E-17 4.7E-22 124.9 9.7 78 24-103 1-88 (88)
18 cd06482 ACD_HspB10 Alpha cryst 99.7 8.5E-17 1.9E-21 128.5 9.3 73 28-102 6-86 (87)
19 cd06480 ACD_HspB8_like Alpha-c 99.7 5E-16 1.1E-20 125.3 9.2 78 24-103 9-91 (91)
20 KOG3591 Alpha crystallins [Pos 99.6 3.3E-15 7.2E-20 132.7 12.1 100 21-127 63-167 (173)
21 KOG0710 Molecular chaperone (s 99.4 2.1E-13 4.5E-18 122.6 7.7 104 14-121 78-194 (196)
22 cd00298 ACD_sHsps_p23-like Thi 99.4 1.3E-12 2.8E-17 94.3 9.5 77 25-103 1-80 (80)
23 cd06469 p23_DYX1C1_like p23_li 99.1 3E-10 6.6E-15 85.7 8.8 70 25-105 1-70 (78)
24 cd06463 p23_like Proteins cont 98.8 5.1E-08 1.1E-12 72.4 8.7 75 25-105 1-75 (84)
25 PF05455 GvpH: GvpH; InterPro 98.7 9.9E-08 2.1E-12 85.8 9.9 80 18-106 89-170 (177)
26 cd06466 p23_CS_SGT1_like p23_l 98.4 1.1E-06 2.4E-11 66.9 7.6 76 24-105 1-76 (84)
27 PF04969 CS: CS domain; Inter 98.3 8.3E-06 1.8E-10 60.3 10.6 77 21-103 1-79 (79)
28 cd06465 p23_hB-ind1_like p23_l 97.8 0.00021 4.6E-09 57.9 10.0 78 21-105 1-78 (108)
29 PF08190 PIH1: pre-RNA process 97.7 0.00023 5E-09 66.7 9.1 65 29-102 260-327 (328)
30 cd06489 p23_CS_hSgt1_like p23_ 97.4 0.0015 3.2E-08 50.5 8.8 76 24-105 1-76 (84)
31 cd06467 p23_NUDC_like p23_like 97.3 0.0017 3.7E-08 49.6 8.1 74 23-105 1-76 (85)
32 cd06468 p23_CacyBP p23_like do 97.2 0.0048 1E-07 48.1 10.0 78 22-105 3-84 (92)
33 cd06488 p23_melusin_like p23_l 96.9 0.014 3E-07 45.9 10.0 78 22-105 2-79 (87)
34 cd06493 p23_NUDCD1_like p23_NU 96.9 0.0095 2E-07 46.5 8.9 74 23-105 1-76 (85)
35 cd00237 p23 p23 binds heat sho 96.0 0.099 2.2E-06 43.3 10.5 77 21-105 2-78 (106)
36 cd06494 p23_NUDCD2_like p23-li 95.7 0.098 2.1E-06 42.4 8.8 76 20-105 5-82 (93)
37 PLN03088 SGT1, suppressor of 95.3 0.11 2.4E-06 50.4 9.3 80 20-105 156-235 (356)
38 cd06490 p23_NCB5OR p23_like do 93.8 1.2 2.6E-05 35.2 10.5 75 23-105 1-79 (87)
39 KOG1309 Suppressor of G2 allel 93.1 0.45 9.8E-06 43.9 7.9 79 20-104 3-81 (196)
40 cd06492 p23_mNUDC_like p23-lik 89.6 3 6.4E-05 33.2 8.3 74 23-105 1-78 (87)
41 cd06495 p23_NUDCD3_like p23-li 88.2 5.4 0.00012 33.0 9.3 79 20-104 4-85 (102)
42 PF14913 DPCD: DPCD protein fa 69.3 26 0.00056 32.7 7.9 78 19-104 85-169 (194)
43 KOG3158 HSP90 co-chaperone p23 53.0 40 0.00087 31.1 6.0 80 18-105 5-84 (180)
44 PF13349 DUF4097: Domain of un 49.6 1.4E+02 0.0029 24.9 8.4 73 22-100 67-147 (166)
45 cd06482 ACD_HspB10 Alpha cryst 48.7 31 0.00066 27.7 4.2 32 73-105 10-41 (87)
46 cd06478 ACD_HspB4-5-6 Alpha-cr 47.3 33 0.00072 26.7 4.1 31 72-103 8-38 (83)
47 KOG1667 Zn2+-binding protein M 45.9 1E+02 0.0022 30.4 7.8 81 22-107 216-296 (320)
48 cd06471 ACD_LpsHSP_like Group 44.5 40 0.00087 26.2 4.2 31 73-104 12-42 (93)
49 cd06526 metazoan_ACD Alpha-cry 40.5 49 0.0011 25.4 4.1 33 71-104 7-39 (83)
50 cd06476 ACD_HspB2_like Alpha c 39.4 47 0.001 26.2 3.9 31 73-104 9-39 (83)
51 cd06477 ACD_HspB3_Like Alpha c 39.2 48 0.001 26.3 3.9 32 72-104 8-39 (83)
52 PF00011 HSP20: Hsp20/alpha cr 38.1 74 0.0016 24.8 4.8 32 72-104 8-39 (102)
53 PRK10743 heat shock protein Ib 37.3 48 0.001 28.7 3.9 31 73-104 47-77 (137)
54 cd06497 ACD_alphaA-crystallin_ 37.3 54 0.0012 25.8 3.9 30 73-103 12-41 (86)
55 cd06470 ACD_IbpA-B_like Alpha- 37.2 63 0.0014 25.4 4.3 32 73-105 13-44 (90)
56 PF14730 DUF4468: Domain of un 36.4 1.4E+02 0.0031 23.5 6.2 66 33-104 2-86 (91)
57 cd06479 ACD_HspB7_like Alpha c 36.0 64 0.0014 25.4 4.1 31 73-104 10-40 (81)
58 cd06469 p23_DYX1C1_like p23_li 35.5 80 0.0017 23.3 4.4 40 30-72 36-76 (78)
59 KOG2265 Nuclear distribution p 29.8 1.7E+02 0.0036 27.2 6.2 75 19-104 17-95 (179)
60 cd06498 ACD_alphaB-crystallin_ 28.8 92 0.002 24.5 3.9 30 73-103 9-38 (84)
61 cd06472 ACD_ScHsp26_like Alpha 27.9 1.1E+02 0.0023 23.9 4.2 31 73-104 11-42 (92)
62 PF12992 DUF3876: Domain of un 27.6 1.6E+02 0.0034 24.3 5.2 39 20-60 25-68 (95)
63 PF00347 Ribosomal_L6: Ribosom 27.3 78 0.0017 23.6 3.2 47 43-103 2-48 (77)
64 cd06475 ACD_HspB1_like Alpha c 27.3 1E+02 0.0023 24.2 4.0 31 73-104 12-42 (86)
65 KOG3413 Mitochondrial matrix p 27.3 45 0.00098 30.1 2.1 23 81-103 67-89 (156)
66 cd06463 p23_like Proteins cont 26.2 1.4E+02 0.0031 21.4 4.4 41 29-71 40-81 (84)
67 PRK11597 heat shock chaperone 26.0 91 0.002 27.3 3.8 31 73-104 45-75 (142)
68 cd06481 ACD_HspB9_like Alpha c 25.6 1.2E+02 0.0025 24.0 4.0 32 72-104 8-39 (87)
69 TIGR03653 arch_L6P archaeal ri 25.6 2.7E+02 0.0058 25.1 6.8 46 43-103 7-52 (170)
70 TIGR03654 L6_bact ribosomal pr 25.5 2.4E+02 0.0053 25.2 6.5 44 43-102 11-54 (175)
71 PRK05518 rpl6p 50S ribosomal p 23.7 2.8E+02 0.006 25.3 6.6 46 42-102 12-57 (180)
72 PF01299 Lamp: Lysosome-associ 23.2 66 0.0014 30.8 2.6 29 278-306 272-300 (306)
73 PF04972 BON: BON domain; Int 22.9 1.4E+02 0.003 21.4 3.7 25 39-65 12-36 (64)
74 PF09604 Potass_KdpF: F subuni 21.2 17 0.00036 23.5 -1.3 17 286-302 2-18 (25)
75 cd06467 p23_NUDC_like p23_like 21.1 1.8E+02 0.0038 21.8 4.1 30 73-102 10-39 (85)
76 cd06464 ACD_sHsps-like Alpha-c 21.1 1.8E+02 0.004 21.2 4.2 33 72-105 8-40 (88)
77 PTZ00027 60S ribosomal protein 21.1 2.7E+02 0.006 25.5 6.0 52 39-103 9-60 (190)
78 PF12037 DUF3523: Domain of un 20.9 30 0.00064 33.8 -0.3 40 259-300 215-254 (276)
79 PRK05498 rplF 50S ribosomal pr 20.5 2.8E+02 0.0062 24.8 5.9 44 43-102 12-55 (178)
80 KOG3591 Alpha crystallins [Pos 20.2 1.6E+02 0.0034 26.7 4.2 40 36-79 121-161 (173)
81 COG5091 SGT1 Suppressor of G2 20.1 61 0.0013 32.4 1.7 80 21-105 177-256 (368)
No 1
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=8.3e-21 Score=161.64 Aligned_cols=97 Identities=26% Similarity=0.463 Sum_probs=83.2
Q ss_pred ccccceeeEEcCCeEEEEEEcCCCCCCCeEEEEEecCCEEEEEEEEEcc----CC-------eEEEEEEEEECCCCcccC
Q 035730 18 DFHPMSEWLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLG----DN-------KWSRCNQAFPIPSNCKID 86 (309)
Q Consensus 18 ~~~P~vDI~Etdd~yvL~vDLPGfkpEDIkV~vVdeg~~LtIsGere~~----~~-------k~~rF~R~f~LPe~VD~e 86 (309)
.+.|+|||+++++.|+|.++||||+++||+|++ +++.|+|+|++... .. .+..|+|+|.||..|+.+
T Consensus 38 ~~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~--~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~ 115 (146)
T COG0071 38 TGTPPVDIEETDDEYRITAELPGVDKEDIEITV--EGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPE 115 (146)
T ss_pred CCCCcEEEEEcCCEEEEEEEcCCCChHHeEEEE--ECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECccccccc
Confidence 378999999999999999999999999999998 67899999998752 11 245599999999999999
Q ss_pred ceeEEEeCcEEEEEEeCcCCCCCCCCCCCCeEeec
Q 035730 87 KIHAKWNNAILTVTMPKETITQPQPRKEEPKTTQK 121 (309)
Q Consensus 87 ~IkAsLsDGVLtItLPK~~~~~~~p~~ek~r~IeI 121 (309)
.+.|+|+||||+|+|||..+.. .++++|.|
T Consensus 116 ~~~A~~~nGvL~I~lpk~~~~~-----~~~~~i~I 145 (146)
T COG0071 116 VIKAKYKNGLLTVTLPKAEPEE-----KKPKRIEI 145 (146)
T ss_pred ceeeEeeCcEEEEEEecccccc-----ccCceeec
Confidence 9999999999999999985432 35566665
No 2
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.84 E-value=2e-20 Score=161.24 Aligned_cols=97 Identities=16% Similarity=0.303 Sum_probs=80.9
Q ss_pred ccccceeeEE-cCCeEEEEEEcCCCCCCCeEEEEEecCCEEEEEEEEEcc--CCeE-------EEEEEEEECCCCcccCc
Q 035730 18 DFHPMSEWLD-EPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLG--DNKW-------SRCNQAFPIPSNCKIDK 87 (309)
Q Consensus 18 ~~~P~vDI~E-tdd~yvL~vDLPGfkpEDIkV~vVdeg~~LtIsGere~~--~~k~-------~rF~R~f~LPe~VD~e~ 87 (309)
.+.|++||++ ++++|+|.++||||+++||+|++ +++.|+|+|+++.. +..| +.|.|+|.||.+||.+
T Consensus 30 ~~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v--~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~- 106 (142)
T PRK11597 30 QSFPPYNIEKSDDNHYRITLALAGFRQEDLDIQL--EGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS- 106 (142)
T ss_pred CCCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEE--ECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC-
Confidence 4569999998 57899999999999999999998 68899999997542 2333 3499999999999998
Q ss_pred eeEEEeCcEEEEEEeCcCCCCCCCCCCCCeEeecCC
Q 035730 88 IHAKWNNAILTVTMPKETITQPQPRKEEPKTTQKSP 123 (309)
Q Consensus 88 IkAsLsDGVLtItLPK~~~~~~~p~~ek~r~IeI~~ 123 (309)
+|+|+||||+|+|||..+ +..++++|+|..
T Consensus 107 -~A~~~nGVL~I~lPK~~~-----~~~~~rkI~I~~ 136 (142)
T PRK11597 107 -GATFVNGLLHIDLIRNEP-----EAIAPQRIAISE 136 (142)
T ss_pred -cCEEcCCEEEEEEeccCc-----cccCCcEEEECC
Confidence 699999999999999632 233678899854
No 3
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.83 E-value=5.1e-20 Score=157.54 Aligned_cols=92 Identities=13% Similarity=0.289 Sum_probs=77.9
Q ss_pred cceeeEE-cCCeEEEEEEcCCCCCCCeEEEEEecCCEEEEEEEEEcc--CCeE-------EEEEEEEECCCCcccCceeE
Q 035730 21 PMSEWLD-EPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLG--DNKW-------SRCNQAFPIPSNCKIDKIHA 90 (309)
Q Consensus 21 P~vDI~E-tdd~yvL~vDLPGfkpEDIkV~vVdeg~~LtIsGere~~--~~k~-------~rF~R~f~LPe~VD~e~IkA 90 (309)
|++||++ ++++|+|.++||||+++||+|++ ++++|+|+|++... +..| +.|.|+|.||.+||.++ |
T Consensus 35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v--~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~--A 110 (137)
T PRK10743 35 PPYNVELVDENHYRIAIAVAGFAESELEITA--QDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRG--A 110 (137)
T ss_pred CcEEEEEcCCCEEEEEEECCCCCHHHeEEEE--ECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCc--C
Confidence 9999995 89999999999999999999998 57899999987653 2223 34999999999999994 9
Q ss_pred EEeCcEEEEEEeCcCCCCCCCCCCCCeEeec
Q 035730 91 KWNNAILTVTMPKETITQPQPRKEEPKTTQK 121 (309)
Q Consensus 91 sLsDGVLtItLPK~~~~~~~p~~ek~r~IeI 121 (309)
+|+||||+|+|||..+ +..++|+|+|
T Consensus 111 ~~~dGVL~I~lPK~~~-----~~~~~r~I~I 136 (137)
T PRK10743 111 NLVNGLLYIDLERVIP-----EAKKPRRIEI 136 (137)
T ss_pred EEeCCEEEEEEeCCCc-----cccCCeEEee
Confidence 9999999999999622 2346788887
No 4
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.83 E-value=3.6e-20 Score=146.43 Aligned_cols=78 Identities=18% Similarity=0.371 Sum_probs=69.8
Q ss_pred eeEEcCCeEEEEEEcCCCCCCCeEEEEEecCCEEEEEEEEEcc--CCeEE--EEEEEEECCCCcccCceeEEE-eCcEEE
Q 035730 24 EWLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLG--DNKWS--RCNQAFPIPSNCKIDKIHAKW-NNAILT 98 (309)
Q Consensus 24 DI~Etdd~yvL~vDLPGfkpEDIkV~vVdeg~~LtIsGere~~--~~k~~--rF~R~f~LPe~VD~e~IkAsL-sDGVLt 98 (309)
+|++++++|.|.++||||+|+||+|++ .++.|+|+|++... +..|. .|.|+|.||++||.++|+|+| +||||+
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v--~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~ 81 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKV--LDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLT 81 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEE--ECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEE
Confidence 799999999999999999999999998 57899999987542 23343 399999999999999999999 799999
Q ss_pred EEEeC
Q 035730 99 VTMPK 103 (309)
Q Consensus 99 ItLPK 103 (309)
|++||
T Consensus 82 I~~PK 86 (86)
T cd06497 82 FSGPK 86 (86)
T ss_pred EEecC
Confidence 99997
No 5
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.82 E-value=6.4e-20 Score=144.60 Aligned_cols=81 Identities=30% Similarity=0.636 Sum_probs=71.2
Q ss_pred ceeeEEcCCeEEEEEEcCCCCCCCeEEEEEecCCEEEEEEEEEcc----CCe-------EEEEEEEEECCCCcccCceeE
Q 035730 22 MSEWLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLG----DNK-------WSRCNQAFPIPSNCKIDKIHA 90 (309)
Q Consensus 22 ~vDI~Etdd~yvL~vDLPGfkpEDIkV~vVdeg~~LtIsGere~~----~~k-------~~rF~R~f~LPe~VD~e~IkA 90 (309)
++||+|+++.|+|.++||||+++||+|++ ++++.|+|+|++... ++. +++|.|+|.||.+||.+.|+|
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v-~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A 79 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEV-EDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKA 79 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEE-eCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEE
Confidence 47999999999999999999999999997 334689999987542 222 346999999999999999999
Q ss_pred EEeCcEEEEEEeC
Q 035730 91 KWNNAILTVTMPK 103 (309)
Q Consensus 91 sLsDGVLtItLPK 103 (309)
+|+||||+|+|||
T Consensus 80 ~~~nGvL~I~lPK 92 (92)
T cd06472 80 FLENGVLTVTVPK 92 (92)
T ss_pred EEECCEEEEEecC
Confidence 9999999999997
No 6
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.82 E-value=6.4e-20 Score=144.44 Aligned_cols=78 Identities=17% Similarity=0.282 Sum_probs=71.6
Q ss_pred eeEEcCCeEEEEEEcCCCCCCCeEEEEEecCCEEEEEEEEEccC-CeEEEEEEEEECCCCcccCceeEEE-eCcEEEEEE
Q 035730 24 EWLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLGD-NKWSRCNQAFPIPSNCKIDKIHAKW-NNAILTVTM 101 (309)
Q Consensus 24 DI~Etdd~yvL~vDLPGfkpEDIkV~vVdeg~~LtIsGere~~~-~k~~rF~R~f~LPe~VD~e~IkAsL-sDGVLtItL 101 (309)
||.|++++|.|.++||||+|+||+|++ +++.|+|+|+++... ..|.+|.|+|.||.+||.+.|+|+| +||||+|++
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v--~~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~ 79 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTT--SNNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKA 79 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEE--ECCEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEe
Confidence 689999999999999999999999998 578999999987654 4467899999999999999999998 899999999
Q ss_pred eC
Q 035730 102 PK 103 (309)
Q Consensus 102 PK 103 (309)
+|
T Consensus 80 ~~ 81 (81)
T cd06479 80 RR 81 (81)
T ss_pred cC
Confidence 86
No 7
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.82 E-value=9.1e-20 Score=142.91 Aligned_cols=78 Identities=13% Similarity=0.322 Sum_probs=68.7
Q ss_pred eeEEcCCeEEEEEEcCCCCCCCeEEEEEecCCEEEEEEEEEcc--CCeEE--EEEEEEECCCCcccCceeEEE-eCcEEE
Q 035730 24 EWLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLG--DNKWS--RCNQAFPIPSNCKIDKIHAKW-NNAILT 98 (309)
Q Consensus 24 DI~Etdd~yvL~vDLPGfkpEDIkV~vVdeg~~LtIsGere~~--~~k~~--rF~R~f~LPe~VD~e~IkAsL-sDGVLt 98 (309)
+|.+++++|.|.++||||+|+||+|++ .++.|+|+|++... +..|. .|.|+|.||.+||.+.|+|+| +||||+
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v--~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~ 78 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKV--LGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLT 78 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEE--ECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEE
Confidence 478899999999999999999999998 57899999987542 23343 399999999999999999999 599999
Q ss_pred EEEeC
Q 035730 99 VTMPK 103 (309)
Q Consensus 99 ItLPK 103 (309)
|++||
T Consensus 79 I~~PK 83 (83)
T cd06478 79 ISGPR 83 (83)
T ss_pred EEecC
Confidence 99997
No 8
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.81 E-value=1.2e-19 Score=142.64 Aligned_cols=80 Identities=24% Similarity=0.505 Sum_probs=71.3
Q ss_pred cceeeEEcCCeEEEEEEcCCCCCCCeEEEEEecCCEEEEEEEEEcc------CC-------eEEEEEEEEECCCCcccCc
Q 035730 21 PMSEWLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLG------DN-------KWSRCNQAFPIPSNCKIDK 87 (309)
Q Consensus 21 P~vDI~Etdd~yvL~vDLPGfkpEDIkV~vVdeg~~LtIsGere~~------~~-------k~~rF~R~f~LPe~VD~e~ 87 (309)
|++||+++++.|+|.++||||+++||+|++ +++.|+|+|++... ++ .+++|+|.|.|| +++.+.
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~--~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~ 77 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDY--KDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEE 77 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEE--ECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHH
Confidence 479999999999999999999999999998 57899999998642 11 244699999999 799999
Q ss_pred eeEEEeCcEEEEEEeC
Q 035730 88 IHAKWNNAILTVTMPK 103 (309)
Q Consensus 88 IkAsLsDGVLtItLPK 103 (309)
|+|+|+||||+|+|||
T Consensus 78 i~A~~~dGvL~I~lPK 93 (93)
T cd06471 78 IKAKYENGVLKITLPK 93 (93)
T ss_pred CEEEEECCEEEEEEcC
Confidence 9999999999999997
No 9
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.81 E-value=5.7e-19 Score=139.56 Aligned_cols=92 Identities=27% Similarity=0.561 Sum_probs=72.6
Q ss_pred eeEEcCCeEEEEEEcCCCCCCCeEEEEEecCCEEEEEEEEEc--cCCe-------EEEEEEEEECCCCcccCceeEEEeC
Q 035730 24 EWLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQL--GDNK-------WSRCNQAFPIPSNCKIDKIHAKWNN 94 (309)
Q Consensus 24 DI~Etdd~yvL~vDLPGfkpEDIkV~vVdeg~~LtIsGere~--~~~k-------~~rF~R~f~LPe~VD~e~IkAsLsD 94 (309)
||.+++++|.|.++||||.++||+|++ +++.|+|+|.+.. .++. +..|.|.|.||.++|.+.|+|.|+|
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~--~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~ 78 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKV--DDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYEN 78 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEE--ETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETT
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEE--ecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecC
Confidence 799999999999999999999999998 5779999999882 2222 3469999999999999999999999
Q ss_pred cEEEEEEeCcCCCCCCCCCCCCeEeec
Q 035730 95 AILTVTMPKETITQPQPRKEEPKTTQK 121 (309)
Q Consensus 95 GVLtItLPK~~~~~~~p~~ek~r~IeI 121 (309)
|+|+|++||...... ..++.|+|
T Consensus 79 GvL~I~~pk~~~~~~----~~~~~I~I 101 (102)
T PF00011_consen 79 GVLTITIPKKEEEED----SQPKRIPI 101 (102)
T ss_dssp SEEEEEEEBSSSCTT----SSSCEE-E
T ss_pred CEEEEEEEccccccC----CCCeEEEe
Confidence 999999999854321 35677776
No 10
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.80 E-value=2.1e-19 Score=141.63 Aligned_cols=78 Identities=14% Similarity=0.334 Sum_probs=68.4
Q ss_pred eEEcCCeEEEEEEcCCCCCCCeEEEEEecCCEEEEEEEEEcc--CCeEE--EEEEEEECCCCcccCceeEEEe-CcEEEE
Q 035730 25 WLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLG--DNKWS--RCNQAFPIPSNCKIDKIHAKWN-NAILTV 99 (309)
Q Consensus 25 I~Etdd~yvL~vDLPGfkpEDIkV~vVdeg~~LtIsGere~~--~~k~~--rF~R~f~LPe~VD~e~IkAsLs-DGVLtI 99 (309)
+.+++++|.|.++||||+|+||+|++ .++.|+|+|+++.. +..|+ .|.|+|.||.+||.+.|+|+|+ ||||+|
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v--~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I 79 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKV--LGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTV 79 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEE--ECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEE
Confidence 57889999999999999999999998 57899999987552 22233 3999999999999999999996 999999
Q ss_pred EEeCc
Q 035730 100 TMPKE 104 (309)
Q Consensus 100 tLPK~ 104 (309)
++||.
T Consensus 80 ~lPk~ 84 (84)
T cd06498 80 CGPRK 84 (84)
T ss_pred EEeCC
Confidence 99984
No 11
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.79 E-value=5.6e-19 Score=139.28 Aligned_cols=77 Identities=14% Similarity=0.281 Sum_probs=67.1
Q ss_pred eEEcCCeEEEEEEcCCCCCCCeEEEEEecCCEEEEEEEEEcc--C-CeEE-EEEEEEECCCCcccCceeEEEe-CcEEEE
Q 035730 25 WLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLG--D-NKWS-RCNQAFPIPSNCKIDKIHAKWN-NAILTV 99 (309)
Q Consensus 25 I~Etdd~yvL~vDLPGfkpEDIkV~vVdeg~~LtIsGere~~--~-~k~~-rF~R~f~LPe~VD~e~IkAsLs-DGVLtI 99 (309)
+..++++|.|.++||||+|+||+|++ .++.|+|+|++... . +.+. .|.|+|.||.+||.+.|+|+|+ ||||+|
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v--~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I 79 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRT--VDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCI 79 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEE--ECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEE
Confidence 45678999999999999999999998 57899999997543 2 3322 3999999999999999999996 999999
Q ss_pred EEeC
Q 035730 100 TMPK 103 (309)
Q Consensus 100 tLPK 103 (309)
++||
T Consensus 80 ~~Pr 83 (83)
T cd06476 80 QAPR 83 (83)
T ss_pred EecC
Confidence 9997
No 12
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.79 E-value=7e-19 Score=139.09 Aligned_cols=78 Identities=17% Similarity=0.310 Sum_probs=69.9
Q ss_pred eeeEEcCCeEEEEEEcCCCCCCCeEEEEEecCCEEEEEEEEEccC---Ce-EEEEEEEEECCCCcccCceeEEEe-CcEE
Q 035730 23 SEWLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLGD---NK-WSRCNQAFPIPSNCKIDKIHAKWN-NAIL 97 (309)
Q Consensus 23 vDI~Etdd~yvL~vDLPGfkpEDIkV~vVdeg~~LtIsGere~~~---~k-~~rF~R~f~LPe~VD~e~IkAsLs-DGVL 97 (309)
.||+|++++|.|.++||||+|+||+|++ .++.|+|+|+++... +. +++|+|+|.||.+||.++|+|.|+ ||||
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v--~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL 80 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKT--KDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGIL 80 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEE--ECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeE
Confidence 4899999999999999999999999998 577999999986532 22 345999999999999999999997 9999
Q ss_pred EEEEe
Q 035730 98 TVTMP 102 (309)
Q Consensus 98 tItLP 102 (309)
+|++|
T Consensus 81 ~I~lP 85 (86)
T cd06475 81 TVEAP 85 (86)
T ss_pred EEEec
Confidence 99998
No 13
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.78 E-value=1.6e-18 Score=136.95 Aligned_cols=79 Identities=16% Similarity=0.344 Sum_probs=69.6
Q ss_pred cceeeEEcC-CeEEEEEEcCCCCCCCeEEEEEecCCEEEEEEEEEccC---Ce-------EEEEEEEEECCCCcccCcee
Q 035730 21 PMSEWLDEP-ENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLGD---NK-------WSRCNQAFPIPSNCKIDKIH 89 (309)
Q Consensus 21 P~vDI~Etd-d~yvL~vDLPGfkpEDIkV~vVdeg~~LtIsGere~~~---~k-------~~rF~R~f~LPe~VD~e~Ik 89 (309)
|++||++++ +.|+|.++||||+++||+|.+ +++.|+|+|++.... .+ +++|.|+|.||.++|.+ +
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~--~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~ 76 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEV--ENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--G 76 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEE--ECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--e
Confidence 789999975 999999999999999999998 578999999986642 22 34599999999999985 8
Q ss_pred EEEeCcEEEEEEeC
Q 035730 90 AKWNNAILTVTMPK 103 (309)
Q Consensus 90 AsLsDGVLtItLPK 103 (309)
|+|+||||+|+||+
T Consensus 77 A~~~~GvL~I~l~~ 90 (90)
T cd06470 77 AELENGLLTIDLER 90 (90)
T ss_pred eEEeCCEEEEEEEC
Confidence 99999999999985
No 14
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.76 E-value=3.9e-18 Score=132.34 Aligned_cols=74 Identities=16% Similarity=0.363 Sum_probs=66.0
Q ss_pred cCCeEEEEEEcCCCCCCCeEEEEEecCCEEEEEEEEEccC----CeEEEEEEEEECCCCcccCceeEEEeC-cEEEEEEe
Q 035730 28 EPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLGD----NKWSRCNQAFPIPSNCKIDKIHAKWNN-AILTVTMP 102 (309)
Q Consensus 28 tdd~yvL~vDLPGfkpEDIkV~vVdeg~~LtIsGere~~~----~k~~rF~R~f~LPe~VD~e~IkAsLsD-GVLtItLP 102 (309)
++++|.|.++||||+++||+|++ +++.|+|+|+++... ..+.+|.|+|.||.+||.+.++|+|.| |+|+|++|
T Consensus 5 ~~~~~~v~~dlpG~~~edI~v~v--~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~P 82 (83)
T cd06526 5 DDEKFQVTLDVKGFKPEELKVKV--SDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAP 82 (83)
T ss_pred cCeeEEEEEECCCCCHHHcEEEE--ECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEec
Confidence 34699999999999999999998 578999999987743 235569999999999999999999997 99999999
Q ss_pred C
Q 035730 103 K 103 (309)
Q Consensus 103 K 103 (309)
|
T Consensus 83 k 83 (83)
T cd06526 83 K 83 (83)
T ss_pred C
Confidence 7
No 15
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.74 E-value=9.5e-18 Score=132.79 Aligned_cols=75 Identities=15% Similarity=0.239 Sum_probs=66.0
Q ss_pred EEcCCeEEEEEEcCCCCCCCeEEEEEecCCEEEEEEEEEcc--C-Ce-EEEEEEEEECCCCcccCceeEEE-eCcEEEEE
Q 035730 26 LDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLG--D-NK-WSRCNQAFPIPSNCKIDKIHAKW-NNAILTVT 100 (309)
Q Consensus 26 ~Etdd~yvL~vDLPGfkpEDIkV~vVdeg~~LtIsGere~~--~-~k-~~rF~R~f~LPe~VD~e~IkAsL-sDGVLtIt 100 (309)
.+++++|.|.++||||+|+||+|++ .++.|+|+|++... + +. +..|+|+|.||.+|+.++|+|+| +||||+|+
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v--~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~ 80 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQV--FEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVE 80 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEE--ECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEE
Confidence 4688999999999999999999998 67899999998653 2 32 23599999999999999999998 79999999
Q ss_pred Ee
Q 035730 101 MP 102 (309)
Q Consensus 101 LP 102 (309)
.|
T Consensus 81 ~~ 82 (83)
T cd06477 81 TK 82 (83)
T ss_pred ec
Confidence 86
No 16
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.74 E-value=8.1e-18 Score=133.27 Aligned_cols=75 Identities=17% Similarity=0.347 Sum_probs=66.2
Q ss_pred EcCCeEEEEEEcCCCCCCCeEEEEEecCCEEEEEEEEEccC----CeE----EEEEEEEECCCCcccCceeEEE-eCcEE
Q 035730 27 DEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLGD----NKW----SRCNQAFPIPSNCKIDKIHAKW-NNAIL 97 (309)
Q Consensus 27 Etdd~yvL~vDLPGfkpEDIkV~vVdeg~~LtIsGere~~~----~k~----~rF~R~f~LPe~VD~e~IkAsL-sDGVL 97 (309)
+..++|.|.++||||+++||+|++ +++.|+|+|++.... +.| ..|.|+|.||.+||.+.|+|+| +||||
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v--~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL 81 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRV--DGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHL 81 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEE--ECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceE
Confidence 567999999999999999999998 578999999876531 233 4599999999999999999999 89999
Q ss_pred EEEEeC
Q 035730 98 TVTMPK 103 (309)
Q Consensus 98 tItLPK 103 (309)
+|++|+
T Consensus 82 ~I~~P~ 87 (87)
T cd06481 82 HIRAPR 87 (87)
T ss_pred EEEcCC
Confidence 999996
No 17
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.73 E-value=2.2e-17 Score=124.86 Aligned_cols=78 Identities=27% Similarity=0.597 Sum_probs=70.1
Q ss_pred eeEEcCCeEEEEEEcCCCCCCCeEEEEEecCCEEEEEEEEEccCC----------eEEEEEEEEECCCCcccCceeEEEe
Q 035730 24 EWLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLGDN----------KWSRCNQAFPIPSNCKIDKIHAKWN 93 (309)
Q Consensus 24 DI~Etdd~yvL~vDLPGfkpEDIkV~vVdeg~~LtIsGere~~~~----------k~~rF~R~f~LPe~VD~e~IkAsLs 93 (309)
+|.+++++|.|.++||||++++|+|++ .++.|.|+|++..... .++.|.|+|.||.++|.+.++|.|+
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v--~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~ 78 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEV--EDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLE 78 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEE--ECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEe
Confidence 578999999999999999999999998 5689999999876421 2456999999999999999999999
Q ss_pred CcEEEEEEeC
Q 035730 94 NAILTVTMPK 103 (309)
Q Consensus 94 DGVLtItLPK 103 (309)
||+|+|++||
T Consensus 79 ~G~L~I~~pk 88 (88)
T cd06464 79 NGVLTITLPK 88 (88)
T ss_pred CCEEEEEEcC
Confidence 9999999997
No 18
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.69 E-value=8.5e-17 Score=128.46 Aligned_cols=73 Identities=15% Similarity=0.342 Sum_probs=64.5
Q ss_pred cCCeEEEEEEcCCCCCCCeEEEEEecCCEEEEEEEEEccC-------CeEEEEEEEEECCCCcccCceeEEEeC-cEEEE
Q 035730 28 EPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLGD-------NKWSRCNQAFPIPSNCKIDKIHAKWNN-AILTV 99 (309)
Q Consensus 28 tdd~yvL~vDLPGfkpEDIkV~vVdeg~~LtIsGere~~~-------~k~~rF~R~f~LPe~VD~e~IkAsLsD-GVLtI 99 (309)
+++.|+|.++||||+++||+|++ .++.|+|+|+++... ..+++|.|+|.||.+||.++|+|+|+| |||+|
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v--~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i 83 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKV--KDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKI 83 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEE--ECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEE
Confidence 57999999999999999999998 578999999986521 235679999999999999999999995 59999
Q ss_pred EEe
Q 035730 100 TMP 102 (309)
Q Consensus 100 tLP 102 (309)
..|
T Consensus 84 ~~~ 86 (87)
T cd06482 84 ETP 86 (87)
T ss_pred eeC
Confidence 987
No 19
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.65 E-value=5e-16 Score=125.25 Aligned_cols=78 Identities=14% Similarity=0.259 Sum_probs=68.1
Q ss_pred eeEEcCCeEEEEEEcCCCCCCCeEEEEEecCCEEEEEEEEEccC---Ce-EEEEEEEEECCCCcccCceeEEEe-CcEEE
Q 035730 24 EWLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLGD---NK-WSRCNQAFPIPSNCKIDKIHAKWN-NAILT 98 (309)
Q Consensus 24 DI~Etdd~yvL~vDLPGfkpEDIkV~vVdeg~~LtIsGere~~~---~k-~~rF~R~f~LPe~VD~e~IkAsLs-DGVLt 98 (309)
-+..++++|.|.+|+.||+||||+|++ .++.|+|+|+++... +. +..|.|+|.||++||.+.|+|.|. ||+|+
T Consensus 9 ~~~~~~~~f~v~ldv~gF~pEDL~Vkv--~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~ 86 (91)
T cd06480 9 PPPNSSEPWKVCVNVHSFKPEELTVKT--KDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLI 86 (91)
T ss_pred CCCCCCCcEEEEEEeCCCCHHHcEEEE--ECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEE
Confidence 345688999999999999999999998 578999999987642 33 334999999999999999999999 99999
Q ss_pred EEEeC
Q 035730 99 VTMPK 103 (309)
Q Consensus 99 ItLPK 103 (309)
|.+|.
T Consensus 87 IeaP~ 91 (91)
T cd06480 87 IEAPQ 91 (91)
T ss_pred EEcCC
Confidence 99983
No 20
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=3.3e-15 Score=132.69 Aligned_cols=100 Identities=14% Similarity=0.292 Sum_probs=83.7
Q ss_pred cceeeEEcCCeEEEEEEcCCCCCCCeEEEEEecCCEEEEEEEEEccC---CeEEE-EEEEEECCCCcccCceeEEEe-Cc
Q 035730 21 PMSEWLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLGD---NKWSR-CNQAFPIPSNCKIDKIHAKWN-NA 95 (309)
Q Consensus 21 P~vDI~Etdd~yvL~vDLPGfkpEDIkV~vVdeg~~LtIsGere~~~---~k~~r-F~R~f~LPe~VD~e~IkAsLs-DG 95 (309)
...++..++++|.|.+|+..|+|++|.|.+ .|+.|.|+|+++... +...| |.|+|.||++||++.|.+.|+ ||
T Consensus 63 ~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~--~~~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~dG 140 (173)
T KOG3591|consen 63 GASEIVNDKDKFEVNLDVHQFKPEELKVKT--DDNTLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSSDG 140 (173)
T ss_pred cccccccCCCcEEEEEEcccCcccceEEEe--CCCEEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeCCCc
Confidence 357788899999999999999999999998 677999999987753 44444 999999999999999999999 99
Q ss_pred EEEEEEeCcCCCCCCCCCCCCeEeecCCCCCC
Q 035730 96 ILTVTMPKETITQPQPRKEEPKTTQKSPKAAE 127 (309)
Q Consensus 96 VLtItLPK~~~~~~~p~~ek~r~IeI~~~~a~ 127 (309)
+|+|++|+...... ..|.|+|...+..
T Consensus 141 vLtI~ap~~~~~~~-----~er~ipI~~~~~~ 167 (173)
T KOG3591|consen 141 VLTIEAPKPPPKQD-----NERSIPIEQVGPS 167 (173)
T ss_pred eEEEEccCCCCcCc-----cceEEeEeecCcc
Confidence 99999999744322 5688888655443
No 21
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=2.1e-13 Score=122.62 Aligned_cols=104 Identities=24% Similarity=0.483 Sum_probs=85.6
Q ss_pred ccccccccceeeEEcCCeEEEEEEcCCCCCCCeEEEEEecCCEEEEEEEEEccC------CeE-------EEEEEEEECC
Q 035730 14 NLFEDFHPMSEWLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLGD------NKW-------SRCNQAFPIP 80 (309)
Q Consensus 14 ~~~e~~~P~vDI~Etdd~yvL~vDLPGfkpEDIkV~vVdeg~~LtIsGere~~~------~k~-------~rF~R~f~LP 80 (309)
.+...+.++++|.+..+.|.+.++|||+.+++|+|++ +++++|+|+|++.... ..| ..|.|+|.||
T Consensus 78 ~~~~~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~-~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lP 156 (196)
T KOG0710|consen 78 EAKSEARVPWDVKESPDAHEFKVDLPGLKKEDIKVEV-EDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELP 156 (196)
T ss_pred cccccccCCcccccCCCceEEEeeCCCCCchhceEEe-ccCcEEEEecccccccccccCCccceeehhcccceEeeecCC
Confidence 4556788899999999999999999999999999997 4456899999986632 123 3499999999
Q ss_pred CCcccCceeEEEeCcEEEEEEeCcCCCCCCCCCCCCeEeec
Q 035730 81 SNCKIDKIHAKWNNAILTVTMPKETITQPQPRKEEPKTTQK 121 (309)
Q Consensus 81 e~VD~e~IkAsLsDGVLtItLPK~~~~~~~p~~ek~r~IeI 121 (309)
++++.+.|+|.|.||||+|++||..... ....++.|.|
T Consensus 157 env~~d~ikA~~~nGVL~VvvpK~~~~~---~~~~v~~i~i 194 (196)
T KOG0710|consen 157 ENVDVDEIKAEMENGVLTVVVPKLEPLL---KKPKVRQIAI 194 (196)
T ss_pred ccccHHHHHHHhhCCeEEEEEecccccc---cCCccceeec
Confidence 9999999999999999999999985422 3445566665
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.42 E-value=1.3e-12 Score=94.26 Aligned_cols=77 Identities=23% Similarity=0.603 Sum_probs=68.6
Q ss_pred eEEcCCeEEEEEEcCCCCCCCeEEEEEecCCEEEEEEEEEccC---CeEEEEEEEEECCCCcccCceeEEEeCcEEEEEE
Q 035730 25 WLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLGD---NKWSRCNQAFPIPSNCKIDKIHAKWNNAILTVTM 101 (309)
Q Consensus 25 I~Etdd~yvL~vDLPGfkpEDIkV~vVdeg~~LtIsGere~~~---~k~~rF~R~f~LPe~VD~e~IkAsLsDGVLtItL 101 (309)
|+++++.|.|.++|||+.+++|.|.+ +++.|.|+|.+.... ..+..|.+.|.||..++.+.+.|.|.+|+|.|.|
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~--~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l 78 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEV--EDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLEITL 78 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEE--ECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEEEEE
Confidence 67899999999999999999999998 568999999876532 2345699999999999999999999999999999
Q ss_pred eC
Q 035730 102 PK 103 (309)
Q Consensus 102 PK 103 (309)
||
T Consensus 79 ~K 80 (80)
T cd00298 79 PK 80 (80)
T ss_pred cC
Confidence 97
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.13 E-value=3e-10 Score=85.73 Aligned_cols=70 Identities=21% Similarity=0.298 Sum_probs=63.8
Q ss_pred eEEcCCeEEEEEEcCCCCCCCeEEEEEecCCEEEEEEEEEccCCeEEEEEEEEECCCCcccCceeEEEeCcEEEEEEeCc
Q 035730 25 WLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLGDNKWSRCNQAFPIPSNCKIDKIHAKWNNAILTVTMPKE 104 (309)
Q Consensus 25 I~Etdd~yvL~vDLPGfkpEDIkV~vVdeg~~LtIsGere~~~~k~~rF~R~f~LPe~VD~e~IkAsLsDGVLtItLPK~ 104 (309)
|+++++.+.|.+++||+++++++|++ +++.|.|.| ..|.+.+.||..||++...+++.+|.|.|+|+|.
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~--~~~~l~i~~---------~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~ 69 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFC--SDLYLKVNF---------PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKK 69 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEE--ecCEEEEcC---------CCEEEEEeCcccccccccEEEEeCCEEEEEEEeC
Confidence 67899999999999999999999998 567899987 1378899999999999999999999999999997
Q ss_pred C
Q 035730 105 T 105 (309)
Q Consensus 105 ~ 105 (309)
.
T Consensus 70 ~ 70 (78)
T cd06469 70 E 70 (78)
T ss_pred C
Confidence 4
No 24
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=98.77 E-value=5.1e-08 Score=72.40 Aligned_cols=75 Identities=11% Similarity=0.156 Sum_probs=65.4
Q ss_pred eEEcCCeEEEEEEcCCCCCCCeEEEEEecCCEEEEEEEEEccCCeEEEEEEEEECCCCcccCceeEEEeCcEEEEEEeCc
Q 035730 25 WLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLGDNKWSRCNQAFPIPSNCKIDKIHAKWNNAILTVTMPKE 104 (309)
Q Consensus 25 I~Etdd~yvL~vDLPGfkpEDIkV~vVdeg~~LtIsGere~~~~k~~rF~R~f~LPe~VD~e~IkAsLsDGVLtItLPK~ 104 (309)
|+++++.+.|.+.+||..++++.|.+ +++.|.|++.... -..|.+.+.|+..|+++...+++.+|.|.|+|+|.
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~--~~~~l~i~~~~~~----~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~ 74 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEF--TPKSLTVSVKGGG----GKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKK 74 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEE--ecCEEEEEeeCCC----CCceEEeeEccCccchhhcEEEEeCCEEEEEEEEC
Confidence 57889999999999999999999998 5678999986431 13477889999999999999999999999999997
Q ss_pred C
Q 035730 105 T 105 (309)
Q Consensus 105 ~ 105 (309)
.
T Consensus 75 ~ 75 (84)
T cd06463 75 E 75 (84)
T ss_pred C
Confidence 4
No 25
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=98.70 E-value=9.9e-08 Score=85.84 Aligned_cols=80 Identities=13% Similarity=0.224 Sum_probs=64.2
Q ss_pred ccccceeeEEcCC-eEEEEEEcCCCCCCC-eEEEEEecCCEEEEEEEEEccCCeEEEEEEEEECCCCcccCceeEEEeCc
Q 035730 18 DFHPMSEWLDEPE-NNILLVHLPDFTKEQ-IRITCVRSSRIVRVTGERQLGDNKWSRCNQAFPIPSNCKIDKIHAKWNNA 95 (309)
Q Consensus 18 ~~~P~vDI~Etdd-~yvL~vDLPGfkpED-IkV~vVdeg~~LtIsGere~~~~k~~rF~R~f~LPe~VD~e~IkAsLsDG 95 (309)
...+.+++.+.++ .++|.++|||++.++ |+|.|..+.+.|+|.... +|.+++.||.. +.+.++++|.||
T Consensus 89 ~~~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~~--------~~~krv~L~~~-~~e~~~~t~nNg 159 (177)
T PF05455_consen 89 EESIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVGE--------KYLKRVALPWP-DPEITSATFNNG 159 (177)
T ss_pred cceeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecCC--------ceEeeEecCCC-ccceeeEEEeCc
Confidence 3467789998777 688999999999999 999985455667775322 36689999966 688899999999
Q ss_pred EEEEEEeCcCC
Q 035730 96 ILTVTMPKETI 106 (309)
Q Consensus 96 VLtItLPK~~~ 106 (309)
||.|.|-+...
T Consensus 160 ILEIri~~~~~ 170 (177)
T PF05455_consen 160 ILEIRIRRTEE 170 (177)
T ss_pred eEEEEEeecCC
Confidence 99999998743
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.42 E-value=1.1e-06 Score=66.85 Aligned_cols=76 Identities=9% Similarity=0.162 Sum_probs=65.4
Q ss_pred eeEEcCCeEEEEEEcCCCCCCCeEEEEEecCCEEEEEEEEEccCCeEEEEEEEEECCCCcccCceeEEEeCcEEEEEEeC
Q 035730 24 EWLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLGDNKWSRCNQAFPIPSNCKIDKIHAKWNNAILTVTMPK 103 (309)
Q Consensus 24 DI~Etdd~yvL~vDLPGfkpEDIkV~vVdeg~~LtIsGere~~~~k~~rF~R~f~LPe~VD~e~IkAsLsDGVLtItLPK 103 (309)
||+++++.+.|.+.+||+.++++.|.+ +++.|.|++... ++ ..|...+.|+..|+++..++++.+|.|.|+|.|
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~--~~~~l~i~~~~~--~~--~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K 74 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEF--NEQSLSVSIILP--GG--SEYQLELDLFGPIDPEQSKVSVLPTKVEITLKK 74 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEE--ecCEEEEEEECC--CC--CeEEEecccccccCchhcEEEEeCeEEEEEEEc
Confidence 689999999999999999999999998 567899987642 11 236678899999999999999999999999999
Q ss_pred cC
Q 035730 104 ET 105 (309)
Q Consensus 104 ~~ 105 (309)
..
T Consensus 75 ~~ 76 (84)
T cd06466 75 AE 76 (84)
T ss_pred CC
Confidence 74
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.34 E-value=8.3e-06 Score=60.27 Aligned_cols=77 Identities=12% Similarity=0.186 Sum_probs=63.7
Q ss_pred cceeeEEcCCeEEEEEEcCCC--CCCCeEEEEEecCCEEEEEEEEEccCCeEEEEEEEEECCCCcccCceeEEEeCcEEE
Q 035730 21 PMSEWLDEPENNILLVHLPDF--TKEQIRITCVRSSRIVRVTGERQLGDNKWSRCNQAFPIPSNCKIDKIHAKWNNAILT 98 (309)
Q Consensus 21 P~vDI~Etdd~yvL~vDLPGf--kpEDIkV~vVdeg~~LtIsGere~~~~k~~rF~R~f~LPe~VD~e~IkAsLsDGVLt 98 (309)
|.|+|+++++...|.+.+++. ++++|.|.+ +++.|.|+..... + ..|...+.|...|+++....++.++.|.
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~--~~~~l~v~~~~~~--~--~~~~~~~~L~~~I~~~~s~~~~~~~~i~ 74 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDF--TDTSLSVSIKSGD--G--KEYLLEGELFGEIDPDESTWKVKDNKIE 74 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEE--ETTEEEEEEEETT--S--CEEEEEEEBSS-BECCCEEEEEETTEEE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEE--EeeEEEEEEEccC--C--ceEEEEEEEeeeEcchhcEEEEECCEEE
Confidence 789999999999999999665 599999998 5778999865322 1 4577788899999999999999999999
Q ss_pred EEEeC
Q 035730 99 VTMPK 103 (309)
Q Consensus 99 ItLPK 103 (309)
|+|.|
T Consensus 75 i~L~K 79 (79)
T PF04969_consen 75 ITLKK 79 (79)
T ss_dssp EEEEB
T ss_pred EEEEC
Confidence 99986
No 28
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=97.81 E-value=0.00021 Score=57.88 Aligned_cols=78 Identities=13% Similarity=0.203 Sum_probs=65.6
Q ss_pred cceeeEEcCCeEEEEEEcCCCCCCCeEEEEEecCCEEEEEEEEEccCCeEEEEEEEEECCCCcccCceeEEEeCcEEEEE
Q 035730 21 PMSEWLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLGDNKWSRCNQAFPIPSNCKIDKIHAKWNNAILTVT 100 (309)
Q Consensus 21 P~vDI~Etdd~yvL~vDLPGfkpEDIkV~vVdeg~~LtIsGere~~~~k~~rF~R~f~LPe~VD~e~IkAsLsDGVLtIt 100 (309)
|+++|+++.+...|.+.+||. +++.|.+ +.+.|.|++....++ ..|.-.+.|...|+++....++.++.|.|+
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~--~~~~l~v~~~~~~~~---~~y~~~~~L~~~I~pe~s~~~v~~~kveI~ 73 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKL--EPTSLSFKAKGGGGG---KKYEFDLEFYKEIDPEESKYKVTGRQIEFV 73 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEE--ECCEEEEEEEcCCCC---eeEEEEeEhhhhccccccEEEecCCeEEEE
Confidence 789999999999999999998 8889997 567899988532211 235667799999999998889999999999
Q ss_pred EeCcC
Q 035730 101 MPKET 105 (309)
Q Consensus 101 LPK~~ 105 (309)
|.|..
T Consensus 74 L~K~~ 78 (108)
T cd06465 74 LRKKE 78 (108)
T ss_pred EEECC
Confidence 99975
No 29
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=97.66 E-value=0.00023 Score=66.72 Aligned_cols=65 Identities=25% Similarity=0.478 Sum_probs=57.1
Q ss_pred CCeEEEEEEcCCC-CCCCeEEEEEecCCEEEEEEEEEccCCeEEEEEEEEECCCCcccCceeEEEe--CcEEEEEEe
Q 035730 29 PENNILLVHLPDF-TKEQIRITCVRSSRIVRVTGERQLGDNKWSRCNQAFPIPSNCKIDKIHAKWN--NAILTVTMP 102 (309)
Q Consensus 29 dd~yvL~vDLPGf-kpEDIkV~vVdeg~~LtIsGere~~~~k~~rF~R~f~LPe~VD~e~IkAsLs--DGVLtItLP 102 (309)
.+.++|.++|||+ +..+|.|.| .++.|.|..... +|.-.+.||..||.+..+|+|. .++|+|+||
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV--~~~~l~l~~~~~-------~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDV--SEDRLSLSSPKP-------KYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred CceEEEEEECCCcCccceeEEEE--eCCEEEEEeCCC-------ceEEEccCCCcccCCCceEEEccCCCEEEEEEE
Confidence 5899999999999 999999998 567888886542 3667899999999999999998 699999998
No 30
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=97.38 E-value=0.0015 Score=50.55 Aligned_cols=76 Identities=8% Similarity=0.181 Sum_probs=62.9
Q ss_pred eeEEcCCeEEEEEEcCCCCCCCeEEEEEecCCEEEEEEEEEccCCeEEEEEEEEECCCCcccCceeEEEeCcEEEEEEeC
Q 035730 24 EWLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLGDNKWSRCNQAFPIPSNCKIDKIHAKWNNAILTVTMPK 103 (309)
Q Consensus 24 DI~Etdd~yvL~vDLPGfkpEDIkV~vVdeg~~LtIsGere~~~~k~~rF~R~f~LPe~VD~e~IkAsLsDGVLtItLPK 103 (309)
||+++++...|.+.++|+.++++.|++ +++.|.+++... ++. .|.-.+.|...|+++....++.++-+.|.|.|
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~--~~~~l~~~~~~~--~~~--~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K 74 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEF--EKRELSATVKLP--SGN--DYSLKLHLLHPIVPEQSSYKILSTKIEIKLKK 74 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEE--eCCEEEEEEECC--CCC--cEEEeeecCceecchhcEEEEeCcEEEEEEEc
Confidence 689999999999999999999999998 567899987642 221 25556789999999987777778889999999
Q ss_pred cC
Q 035730 104 ET 105 (309)
Q Consensus 104 ~~ 105 (309)
..
T Consensus 75 ~~ 76 (84)
T cd06489 75 TE 76 (84)
T ss_pred CC
Confidence 63
No 31
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.29 E-value=0.0017 Score=49.62 Aligned_cols=74 Identities=12% Similarity=0.243 Sum_probs=59.6
Q ss_pred eeeEEcCCeEEEEEEcC-CCCCCCeEEEEEecCCEEEEEEEEEccCCeEEEEEEEEECCCCcccCceeEEEeC-cEEEEE
Q 035730 23 SEWLDEPENNILLVHLP-DFTKEQIRITCVRSSRIVRVTGERQLGDNKWSRCNQAFPIPSNCKIDKIHAKWNN-AILTVT 100 (309)
Q Consensus 23 vDI~Etdd~yvL~vDLP-GfkpEDIkV~vVdeg~~LtIsGere~~~~k~~rF~R~f~LPe~VD~e~IkAsLsD-GVLtIt 100 (309)
|.|.++++...|.+.+| |+.++||.|.+ ..+.|.|+... +.+ .-...|...|+++...-++.+ ..|.|+
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~--~~~~l~v~~~~----~~~---~l~~~L~~~I~~~~s~w~~~~~~~v~i~ 71 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEI--TPKHLKVGVKG----GEP---LLDGELYAKVKVDESTWTLEDGKLLEIT 71 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEE--EcCEEEEEECC----CCc---eEcCcccCceeEcCCEEEEeCCCEEEEE
Confidence 57999999999999997 79999999998 56788888642 111 122368899999987778888 999999
Q ss_pred EeCcC
Q 035730 101 MPKET 105 (309)
Q Consensus 101 LPK~~ 105 (309)
|+|..
T Consensus 72 L~K~~ 76 (85)
T cd06467 72 LEKRN 76 (85)
T ss_pred EEECC
Confidence 99974
No 32
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.21 E-value=0.0048 Score=48.14 Aligned_cols=78 Identities=14% Similarity=0.217 Sum_probs=63.0
Q ss_pred ceeeEEcCCeEEEEEEcCCCCC---CCeEEEEEecCCEEEEEEEEEccCCeEEEEEEEE-ECCCCcccCceeEEEeCcEE
Q 035730 22 MSEWLDEPENNILLVHLPDFTK---EQIRITCVRSSRIVRVTGERQLGDNKWSRCNQAF-PIPSNCKIDKIHAKWNNAIL 97 (309)
Q Consensus 22 ~vDI~Etdd~yvL~vDLPGfkp---EDIkV~vVdeg~~LtIsGere~~~~k~~rF~R~f-~LPe~VD~e~IkAsLsDGVL 97 (309)
.|+|+++++...|.+.+|+..+ +++.|++ +.+.|.|.+.. . ++. .|.-.+ .|-..|+++....++.++-+
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~--~~~~l~v~~~~-~-~~~--~~~~~~~~L~~~I~~e~s~~~~~~~ki 76 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEF--TERSFELKVHD-L-NGK--NYRFTINRLLKKIDPEKSSFKVKTDRI 76 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEe--cCCEEEEEEEC-C-CCc--EEEEEehHhhCccCccccEEEEeCCEE
Confidence 5899999999999999999887 9999998 56789998732 1 121 243455 48899999998888889999
Q ss_pred EEEEeCcC
Q 035730 98 TVTMPKET 105 (309)
Q Consensus 98 tItLPK~~ 105 (309)
.|+|.|..
T Consensus 77 ~i~L~K~~ 84 (92)
T cd06468 77 VITLAKKK 84 (92)
T ss_pred EEEEEeCC
Confidence 99999974
No 33
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=96.89 E-value=0.014 Score=45.91 Aligned_cols=78 Identities=10% Similarity=0.130 Sum_probs=63.7
Q ss_pred ceeeEEcCCeEEEEEEcCCCCCCCeEEEEEecCCEEEEEEEEEccCCeEEEEEEEEECCCCcccCceeEEEeCcEEEEEE
Q 035730 22 MSEWLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLGDNKWSRCNQAFPIPSNCKIDKIHAKWNNAILTVTM 101 (309)
Q Consensus 22 ~vDI~Etdd~yvL~vDLPGfkpEDIkV~vVdeg~~LtIsGere~~~~k~~rF~R~f~LPe~VD~e~IkAsLsDGVLtItL 101 (309)
.+||+++++...|.+-+.|..++++.+.+ +.+.|.|+..-. ++. .|.-.+.|-..|+++..+-+...+-+.|+|
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~--~~~~l~v~~~~~--~~~--~y~~~l~L~~~I~~~~s~~~v~~~kvei~L 75 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEA--NSTVLTIHIVFE--GNK--EFQLDIELWGVIDVEKSSVNMLPTKVEIKL 75 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEe--cCCEEEEEEECC--CCc--eEEEEeeccceEChhHcEEEecCcEEEEEE
Confidence 47999999999999999999999999998 566888875432 121 266677899999999876677789999999
Q ss_pred eCcC
Q 035730 102 PKET 105 (309)
Q Consensus 102 PK~~ 105 (309)
.|..
T Consensus 76 ~K~~ 79 (87)
T cd06488 76 RKAE 79 (87)
T ss_pred EeCC
Confidence 9974
No 34
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=96.88 E-value=0.0095 Score=46.49 Aligned_cols=74 Identities=23% Similarity=0.244 Sum_probs=57.3
Q ss_pred eeeEEcCCeEEEEEEcC-CCCCCCeEEEEEecCCEEEEEEEEEccCCeEEEEEEEEECCCCcccCceeEEEeCc-EEEEE
Q 035730 23 SEWLDEPENNILLVHLP-DFTKEQIRITCVRSSRIVRVTGERQLGDNKWSRCNQAFPIPSNCKIDKIHAKWNNA-ILTVT 100 (309)
Q Consensus 23 vDI~Etdd~yvL~vDLP-GfkpEDIkV~vVdeg~~LtIsGere~~~~k~~rF~R~f~LPe~VD~e~IkAsLsDG-VLtIt 100 (309)
|+|+++.+...|.+.+| |+.++|++|.+ +.+.|.|... ++. .| -.-.|...|+++.-.=.+.+| .|.|.
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~--~~~~l~v~~~----~~~--~~-~~g~L~~~I~~d~Stw~i~~~~~l~i~ 71 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKF--LPDHISIALK----DQA--PL-LEGKLYSSIDHESSTWIIKENKSLEVS 71 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEE--ecCEEEEEeC----CCC--eE-EeCcccCcccccCcEEEEeCCCEEEEE
Confidence 68999999999999995 99999999998 5678888642 111 12 244788999999855556666 69999
Q ss_pred EeCcC
Q 035730 101 MPKET 105 (309)
Q Consensus 101 LPK~~ 105 (309)
|.|..
T Consensus 72 L~K~~ 76 (85)
T cd06493 72 LIKKD 76 (85)
T ss_pred EEECC
Confidence 99974
No 35
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=96.03 E-value=0.099 Score=43.26 Aligned_cols=77 Identities=8% Similarity=0.155 Sum_probs=60.2
Q ss_pred cceeeEEcCCeEEEEEEcCCCCCCCeEEEEEecCCEEEEEEEEEccCCeEEEEEEEEECCCCcccCceeEEEeCcEEEEE
Q 035730 21 PMSEWLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLGDNKWSRCNQAFPIPSNCKIDKIHAKWNNAILTVT 100 (309)
Q Consensus 21 P~vDI~Etdd~yvL~vDLPGfkpEDIkV~vVdeg~~LtIsGere~~~~k~~rF~R~f~LPe~VD~e~IkAsLsDGVLtIt 100 (309)
|+++|++..+.+.|++.+|+ .+|++|.+ +.+.|.++|... ++.. |.-.+.|=..|+++.-+-+...--+.|.
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l--~~~~l~f~~~~~-~g~~---y~~~l~l~~~I~pe~Sk~~v~~r~ve~~ 73 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDF--EKSKLTFSCLNG-DNVK---IYNEIELYDRVDPNDSKHKRTDRSILCC 73 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEE--ecCEEEEEEECC-CCcE---EEEEEEeecccCcccCeEEeCCceEEEE
Confidence 78999999999999999999 57999997 567899998432 2222 4456788888999986666667778888
Q ss_pred EeCcC
Q 035730 101 MPKET 105 (309)
Q Consensus 101 LPK~~ 105 (309)
|.|..
T Consensus 74 L~K~~ 78 (106)
T cd00237 74 LRKGK 78 (106)
T ss_pred EEeCC
Confidence 99974
No 36
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=95.66 E-value=0.098 Score=42.42 Aligned_cols=76 Identities=11% Similarity=0.187 Sum_probs=58.4
Q ss_pred ccceeeEEcCCeEEEEEEcC-CCCCCCeEEEEEecCCEEEEEEEEEccCCeEEEEEEEEECCCCcccCceeEEEeCcE-E
Q 035730 20 HPMSEWLDEPENNILLVHLP-DFTKEQIRITCVRSSRIVRVTGERQLGDNKWSRCNQAFPIPSNCKIDKIHAKWNNAI-L 97 (309)
Q Consensus 20 ~P~vDI~Etdd~yvL~vDLP-GfkpEDIkV~vVdeg~~LtIsGere~~~~k~~rF~R~f~LPe~VD~e~IkAsLsDGV-L 97 (309)
.+.|.|.++.+...|.+.|| |.++.|+.|.+ ..+.|.|.-. +.. -+. =.|...|+++.-.=+++||- |
T Consensus 5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i--~~~~l~V~~~-----g~~-~l~--G~L~~~I~~destWtled~k~l 74 (93)
T cd06494 5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKL--GSRDISLAVK-----GQE-VLK--GKLFDSVVADECTWTLEDRKLI 74 (93)
T ss_pred CCCcEEEeEcCEEEEEEECCCCCceeeEEEEE--EcCEEEEEEC-----CEE-EEc--CcccCccCcccCEEEEECCcEE
Confidence 46799999999999999997 89999999998 5667887641 110 011 15788899998666777765 8
Q ss_pred EEEEeCcC
Q 035730 98 TVTMPKET 105 (309)
Q Consensus 98 tItLPK~~ 105 (309)
.|.|.|..
T Consensus 75 ~I~L~K~~ 82 (93)
T cd06494 75 RIVLTKSN 82 (93)
T ss_pred EEEEEeCC
Confidence 99999973
No 37
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.25 E-value=0.11 Score=50.36 Aligned_cols=80 Identities=14% Similarity=0.147 Sum_probs=64.3
Q ss_pred ccceeeEEcCCeEEEEEEcCCCCCCCeEEEEEecCCEEEEEEEEEccCCeEEEEEEEEECCCCcccCceeEEEeCcEEEE
Q 035730 20 HPMSEWLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLGDNKWSRCNQAFPIPSNCKIDKIHAKWNNAILTV 99 (309)
Q Consensus 20 ~P~vDI~Etdd~yvL~vDLPGfkpEDIkV~vVdeg~~LtIsGere~~~~k~~rF~R~f~LPe~VD~e~IkAsLsDGVLtI 99 (309)
.+.+||+++++..+|.+-+.|+.++++.|++ +.+.|.|+-.. .++.+ |...+.|-..|+++..+-++.---+.|
T Consensus 156 ~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~--~~~~l~v~~~~--~~~~~--y~~~~~L~~~I~p~~s~~~v~~~Kiei 229 (356)
T PLN03088 156 KYRHEFYQKPEEVVVTVFAKGVPAENVNVDF--GEQILSVVIEV--PGEDA--YHLQPRLFGKIIPDKCKYEVLSTKIEI 229 (356)
T ss_pred ccccceeecCCEEEEEEEecCCChHHcEEEe--ecCEEEEEEec--CCCcc--eeecccccccccccccEEEEecceEEE
Confidence 3679999999999999999999999999998 56788887633 22222 344578989999999777777778889
Q ss_pred EEeCcC
Q 035730 100 TMPKET 105 (309)
Q Consensus 100 tLPK~~ 105 (309)
+|.|..
T Consensus 230 ~l~K~~ 235 (356)
T PLN03088 230 RLAKAE 235 (356)
T ss_pred EEecCC
Confidence 999864
No 38
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=93.79 E-value=1.2 Score=35.18 Aligned_cols=75 Identities=9% Similarity=0.138 Sum_probs=53.7
Q ss_pred eeeEEcCCeEEEEEEcCC--CCCCCeEEEEEecCCEEEEEEEEEccCCeEEEEEEEEECCCCcccCceeEEEe--CcEEE
Q 035730 23 SEWLDEPENNILLVHLPD--FTKEQIRITCVRSSRIVRVTGERQLGDNKWSRCNQAFPIPSNCKIDKIHAKWN--NAILT 98 (309)
Q Consensus 23 vDI~Etdd~yvL~vDLPG--fkpEDIkV~vVdeg~~LtIsGere~~~~k~~rF~R~f~LPe~VD~e~IkAsLs--DGVLt 98 (309)
+||++++++.+|.+-..+ ....++.+.. +.+.|.|+-.-. +.+ |...+.|-..|+.+. ..++. -|-+.
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~--~~~~l~v~~~~~---~~~--~~~~~~L~~~I~~~~-~~~~~~~~~KVE 72 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDD--QQRELRVEIILG---DKS--YLLHLDLSNEVQWPC-EVRISTETGKIE 72 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEEC--CCCEEEEEEECC---Cce--EEEeeeccccCCCCc-EEEEcccCceEE
Confidence 589999999999999885 4555555553 556788864322 221 566778888888774 55555 78999
Q ss_pred EEEeCcC
Q 035730 99 VTMPKET 105 (309)
Q Consensus 99 ItLPK~~ 105 (309)
|+|.|.+
T Consensus 73 I~L~K~e 79 (87)
T cd06490 73 LVLKKKE 79 (87)
T ss_pred EEEEcCC
Confidence 9999974
No 39
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=93.15 E-value=0.45 Score=43.89 Aligned_cols=79 Identities=11% Similarity=0.219 Sum_probs=58.9
Q ss_pred ccceeeEEcCCeEEEEEEcCCCCCCCeEEEEEecCCEEEEEEEEEccCCeEEEEEEEEECCCCcccCceeEEEeCcEEEE
Q 035730 20 HPMSEWLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLGDNKWSRCNQAFPIPSNCKIDKIHAKWNNAILTV 99 (309)
Q Consensus 20 ~P~vDI~Etdd~yvL~vDLPGfkpEDIkV~vVdeg~~LtIsGere~~~~k~~rF~R~f~LPe~VD~e~IkAsLsDGVLtI 99 (309)
.+.+||+++.+..+|.+-.+|+.++|++|.+ ..+.|.|.-+-. .+..| .-...|-..|.++...-++----+.|
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~--s~~~l~~~~~~~-~g~~~---~l~~~L~~~I~pe~~s~k~~stKVEI 76 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEI--SENTLSIVIQLP-SGSEY---NLQLKLYHEIIPEKSSFKVFSTKVEI 76 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEEe--ecceEEEEEecC-Cchhh---hhhHHhcccccccceeeEeeeeeEEE
Confidence 4678999999999999999999999999998 556676664332 12223 23344777888888554444788899
Q ss_pred EEeCc
Q 035730 100 TMPKE 104 (309)
Q Consensus 100 tLPK~ 104 (309)
+|+|.
T Consensus 77 ~L~K~ 81 (196)
T KOG1309|consen 77 TLAKA 81 (196)
T ss_pred Eeccc
Confidence 99995
No 40
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=89.57 E-value=3 Score=33.17 Aligned_cols=74 Identities=11% Similarity=0.128 Sum_probs=53.9
Q ss_pred eeeEEcCCeEEEEEEcC-C--CCCCCeEEEEEecCCEEEEEEEEEccCCeEEEEEEEEECCCCcccCceeEEEeCc-EEE
Q 035730 23 SEWLDEPENNILLVHLP-D--FTKEQIRITCVRSSRIVRVTGERQLGDNKWSRCNQAFPIPSNCKIDKIHAKWNNA-ILT 98 (309)
Q Consensus 23 vDI~Etdd~yvL~vDLP-G--fkpEDIkV~vVdeg~~LtIsGere~~~~k~~rF~R~f~LPe~VD~e~IkAsLsDG-VLt 98 (309)
|.|.++.+...|.+.|| | +++.||+|.+ ..+.|.|.-.. ..+ | -.=.|...|+.+.-.=.++|| .|.
T Consensus 1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i--~~~~l~v~~~g----~~~--~-i~G~L~~~V~~des~Wtled~~~l~ 71 (87)
T cd06492 1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDI--QRKHLKVGLKG----QPP--I-IDGELYNEVKVEESSWLIEDGKVVT 71 (87)
T ss_pred CccEeecCEEEEEEECCCCCCccceEEEEEE--ecCEEEEEECC----Cce--E-EeCcccCcccccccEEEEeCCCEEE
Confidence 46788999999999996 3 8999999998 55678775321 111 1 122567888988866667775 899
Q ss_pred EEEeCcC
Q 035730 99 VTMPKET 105 (309)
Q Consensus 99 ItLPK~~ 105 (309)
|+|-|..
T Consensus 72 i~L~K~~ 78 (87)
T cd06492 72 VNLEKIN 78 (87)
T ss_pred EEEEECC
Confidence 9999963
No 41
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=88.23 E-value=5.4 Score=32.97 Aligned_cols=79 Identities=13% Similarity=0.175 Sum_probs=56.3
Q ss_pred ccceeeEEcCCeEEEEEEcC-CC-CCCCeEEEEEecCCEEEEEEEEEccCCeEEEEEEEEECCCCcccCceeEEEeCcE-
Q 035730 20 HPMSEWLDEPENNILLVHLP-DF-TKEQIRITCVRSSRIVRVTGERQLGDNKWSRCNQAFPIPSNCKIDKIHAKWNNAI- 96 (309)
Q Consensus 20 ~P~vDI~Etdd~yvL~vDLP-Gf-kpEDIkV~vVdeg~~LtIsGere~~~~k~~rF~R~f~LPe~VD~e~IkAsLsDGV- 96 (309)
.+.|.|.++-+...|.+.|| |. +..||.|.+ ..+.|.|.-.....+..+ +.- .|...|+.+.-.=.++||-
T Consensus 4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i--~~~~l~v~~~~~~~~~~~--i~G--~L~~~V~~des~Wtled~~~ 77 (102)
T cd06495 4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDL--QSSSIRVSVRDGGGEKVL--MEG--EFTHKINTENSLWSLEPGKC 77 (102)
T ss_pred CCceEEEeECCeEEEEEECCCCCccceEEEEEE--EcCEEEEEEecCCCCceE--EeC--cccCcccCccceEEEeCCCE
Confidence 56799999999999999999 54 689999998 566787764310000011 111 5677888888666677754
Q ss_pred EEEEEeCc
Q 035730 97 LTVTMPKE 104 (309)
Q Consensus 97 LtItLPK~ 104 (309)
|+|+|-|.
T Consensus 78 l~I~L~K~ 85 (102)
T cd06495 78 VLLSLSKC 85 (102)
T ss_pred EEEEEEEC
Confidence 89999996
No 42
>PF14913 DPCD: DPCD protein family
Probab=69.30 E-value=26 Score=32.67 Aligned_cols=78 Identities=18% Similarity=0.264 Sum_probs=58.8
Q ss_pred cccceeeEEcCCeEEEEE-EcCCCCCCCeEEEEEecCCEEEEEEEEEccCCeEEEEEEEEECCCC------cccCceeEE
Q 035730 19 FHPMSEWLDEPENNILLV-HLPDFTKEQIRITCVRSSRIVRVTGERQLGDNKWSRCNQAFPIPSN------CKIDKIHAK 91 (309)
Q Consensus 19 ~~P~vDI~Etdd~yvL~v-DLPGfkpEDIkV~vVdeg~~LtIsGere~~~~k~~rF~R~f~LPe~------VD~e~IkAs 91 (309)
..|-+--.++...|...+ +|| +..+-.+|++..+++.++|+-.. -+|.++|.+|+- .+.+.++..
T Consensus 85 ~nP~~~r~dTk~~fqWRIRNLP-YP~dvYsVtvd~~~r~ivvRTtN-------KKYyKk~~IPDl~R~~l~l~~~~ls~~ 156 (194)
T PF14913_consen 85 SNPIFVRRDTKTSFQWRIRNLP-YPKDVYSVTVDEDERCIVVRTTN-------KKYYKKFSIPDLDRCGLPLEQSALSFA 156 (194)
T ss_pred CCCEEEEEcCccceEEEEccCC-CCccceEEEEcCCCcEEEEECcC-------ccceeEecCCcHHhhCCCcchhhceee
Confidence 457666677889999997 777 57788899975556778887543 237788999853 356667777
Q ss_pred EeCcEEEEEEeCc
Q 035730 92 WNNAILTVTMPKE 104 (309)
Q Consensus 92 LsDGVLtItLPK~ 104 (309)
+.|..|.|+-.|.
T Consensus 157 h~nNTLIIsYkKP 169 (194)
T PF14913_consen 157 HQNNTLIISYKKP 169 (194)
T ss_pred eecCeEEEEecCc
Confidence 7899999999885
No 43
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=52.98 E-value=40 Score=31.11 Aligned_cols=80 Identities=9% Similarity=0.101 Sum_probs=61.0
Q ss_pred ccccceeeEEcCCeEEEEEEcCCCCCCCeEEEEEecCCEEEEEEEEEccCCeEEEEEEEEECCCCcccCceeEEEeCcEE
Q 035730 18 DFHPMSEWLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLGDNKWSRCNQAFPIPSNCKIDKIHAKWNNAIL 97 (309)
Q Consensus 18 ~~~P~vDI~Etdd~yvL~vDLPGfkpEDIkV~vVdeg~~LtIsGere~~~~k~~rF~R~f~LPe~VD~e~IkAsLsDGVL 97 (309)
...|.+-|.+..+-+.|++.|+--+-..|.++ ...|+++|....+ -+.++-.|.|=..||+++.+-+-. +-+
T Consensus 5 ~~~p~v~Waqr~~~vyltv~Ved~~d~~v~~e----~~~l~fs~k~~~d---~~~~~~~ief~~eIdpe~sk~k~~-~r~ 76 (180)
T KOG3158|consen 5 MQPPEVKWAQRRDLVYLTVCVEDAKDVHVNLE----PSKLTFSCKSGAD---NHKYENEIEFFDEIDPEKSKHKRT-SRS 76 (180)
T ss_pred ccCCcchhhhhcCeEEEEEEeccCccceeecc----ccEEEEEeccCCC---ceeeEEeeehhhhcCHhhcccccc-ceE
Confidence 34688999999999999999998766666555 4589999976432 244677899999999998766666 777
Q ss_pred EEEEeCcC
Q 035730 98 TVTMPKET 105 (309)
Q Consensus 98 tItLPK~~ 105 (309)
.+.+++..
T Consensus 77 if~i~~K~ 84 (180)
T KOG3158|consen 77 IFCILRKK 84 (180)
T ss_pred EEEEEEcc
Confidence 77777653
No 44
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=49.59 E-value=1.4e+02 Score=24.93 Aligned_cols=73 Identities=14% Similarity=0.219 Sum_probs=43.5
Q ss_pred ceeeEEcCCeEEEEEEcCCCCCCCeEEEEEecCCEEEEEEEEEcc--CCeEE------EEEEEEECCCCcccCceeEEEe
Q 035730 22 MSEWLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLG--DNKWS------RCNQAFPIPSNCKIDKIHAKWN 93 (309)
Q Consensus 22 ~vDI~Etdd~yvL~vDLPGfkpEDIkV~vVdeg~~LtIsGere~~--~~k~~------rF~R~f~LPe~VD~e~IkAsLs 93 (309)
.+.|...++ ..+.+.. ..+.+.++. +++.|.|..+.... ...|+ ...-.+.||+++..+++.....
T Consensus 67 ~V~I~~~~~-~~i~v~~---~~k~~~~~~--~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~i~I~lP~~~~l~~i~i~~~ 140 (166)
T PF13349_consen 67 DVEIKPSDD-DKIKVEY---NGKKPEISV--EGGTLTIKSKDRESFFFKGFNFNNSDNKSKITIYLPKDYKLDKIDIKTS 140 (166)
T ss_pred eEEEEEcCC-ccEEEEE---cCcEEEEEE--cCCEEEEEEecccccccceEEEcccCCCcEEEEEECCCCceeEEEEEec
Confidence 455555332 3344444 212577775 68899998872211 11111 1344678898888888888888
Q ss_pred CcEEEEE
Q 035730 94 NAILTVT 100 (309)
Q Consensus 94 DGVLtIt 100 (309)
+|=++|.
T Consensus 141 ~G~i~i~ 147 (166)
T PF13349_consen 141 SGDITIE 147 (166)
T ss_pred cccEEEE
Confidence 8877765
No 45
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=48.73 E-value=31 Score=27.72 Aligned_cols=32 Identities=13% Similarity=0.208 Sum_probs=28.6
Q ss_pred EEEEEECCCCcccCceeEEEeCcEEEEEEeCcC
Q 035730 73 CNQAFPIPSNCKIDKIHAKWNNAILTVTMPKET 105 (309)
Q Consensus 73 F~R~f~LPe~VD~e~IkAsLsDGVLtItLPK~~ 105 (309)
|.-...|| +++.++|.-++.||.|+|..-+..
T Consensus 10 ~~v~adlP-G~~kedI~V~v~~~~L~I~ger~~ 41 (87)
T cd06482 10 VLASVDVC-GFEPDQVKVKVKDGKVQVSAEREN 41 (87)
T ss_pred EEEEEECC-CCCHHHeEEEEECCEEEEEEEEec
Confidence 66788898 899999999999999999999853
No 46
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=47.34 E-value=33 Score=26.75 Aligned_cols=31 Identities=6% Similarity=0.120 Sum_probs=27.6
Q ss_pred EEEEEEECCCCcccCceeEEEeCcEEEEEEeC
Q 035730 72 RCNQAFPIPSNCKIDKIHAKWNNAILTVTMPK 103 (309)
Q Consensus 72 rF~R~f~LPe~VD~e~IkAsLsDGVLtItLPK 103 (309)
.|.-.+.|| ++++++|.-++.+|.|+|..-+
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~ 38 (83)
T cd06478 8 RFSVNLDVK-HFSPEELSVKVLGDFVEIHGKH 38 (83)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEE
Confidence 377788998 9999999999999999999865
No 47
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=45.87 E-value=1e+02 Score=30.44 Aligned_cols=81 Identities=9% Similarity=0.116 Sum_probs=65.8
Q ss_pred ceeeEEcCCeEEEEEEcCCCCCCCeEEEEEecCCEEEEEEEEEccCCeEEEEEEEEECCCCcccCceeEEEeCcEEEEEE
Q 035730 22 MSEWLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLGDNKWSRCNQAFPIPSNCKIDKIHAKWNNAILTVTM 101 (309)
Q Consensus 22 ~vDI~Etdd~yvL~vDLPGfkpEDIkV~vVdeg~~LtIsGere~~~~k~~rF~R~f~LPe~VD~e~IkAsLsDGVLtItL 101 (309)
..||.+++...+|.+-.-|.-|+--.|.. ++..|.|.=....++ .+|...+.|=.-|+++...+.+-.--+.|+|
T Consensus 216 R~Dwhqt~~~Vti~VY~k~~lpe~s~iea--n~~~l~V~ivf~~gn---a~fd~d~kLwgvvnve~s~v~m~~tkVEIsl 290 (320)
T KOG1667|consen 216 RHDWHQTNGFVTINVYAKGALPETSNIEA--NGTTLHVSIVFGFGN---ASFDLDYKLWGVVNVEESSVVMGETKVEISL 290 (320)
T ss_pred hhhhhhcCCeEEEEEEeccCCcccceeee--CCeEEEEEEEecCCC---ceeeccceeeeeechhhceEEeecceEEEEE
Confidence 68999999999999999999999988987 677777765443221 2477788887889999999999988999999
Q ss_pred eCcCCC
Q 035730 102 PKETIT 107 (309)
Q Consensus 102 PK~~~~ 107 (309)
+|.++.
T Consensus 291 ~k~ep~ 296 (320)
T KOG1667|consen 291 KKAEPG 296 (320)
T ss_pred eccCCC
Confidence 998654
No 48
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=44.49 E-value=40 Score=26.19 Aligned_cols=31 Identities=16% Similarity=0.351 Sum_probs=27.7
Q ss_pred EEEEEECCCCcccCceeEEEeCcEEEEEEeCc
Q 035730 73 CNQAFPIPSNCKIDKIHAKWNNAILTVTMPKE 104 (309)
Q Consensus 73 F~R~f~LPe~VD~e~IkAsLsDGVLtItLPK~ 104 (309)
|.-.+.|| +++.++|.-.+.++.|+|..-+.
T Consensus 12 ~~i~~~lP-Gv~~edi~v~~~~~~L~I~g~~~ 42 (93)
T cd06471 12 YIVEADLP-GFKKEDIKLDYKDGYLTISAKRD 42 (93)
T ss_pred EEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 66788999 79999999999999999998875
No 49
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=40.45 E-value=49 Score=25.38 Aligned_cols=33 Identities=15% Similarity=0.224 Sum_probs=29.5
Q ss_pred EEEEEEEECCCCcccCceeEEEeCcEEEEEEeCc
Q 035730 71 SRCNQAFPIPSNCKIDKIHAKWNNAILTVTMPKE 104 (309)
Q Consensus 71 ~rF~R~f~LPe~VD~e~IkAsLsDGVLtItLPK~ 104 (309)
..|.-.+.|| ++..++|.-.+.++.|+|..-+.
T Consensus 7 ~~~~v~~dlp-G~~~edI~v~v~~~~L~I~g~~~ 39 (83)
T cd06526 7 EKFQVTLDVK-GFKPEELKVKVSDNKLVVEGKHE 39 (83)
T ss_pred eeEEEEEECC-CCCHHHcEEEEECCEEEEEEEEe
Confidence 3588899999 69999999999999999999875
No 50
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=39.41 E-value=47 Score=26.17 Aligned_cols=31 Identities=13% Similarity=0.156 Sum_probs=27.0
Q ss_pred EEEEEECCCCcccCceeEEEeCcEEEEEEeCc
Q 035730 73 CNQAFPIPSNCKIDKIHAKWNNAILTVTMPKE 104 (309)
Q Consensus 73 F~R~f~LPe~VD~e~IkAsLsDGVLtItLPK~ 104 (309)
|.-.+.|| ++.+++|.-++.||.|+|..-+.
T Consensus 9 y~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 39 (83)
T cd06476 9 YQVFLDVC-HFTPDEITVRTVDNLLEVSARHP 39 (83)
T ss_pred EEEEEEcC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 66678887 89999999999999999999764
No 51
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=39.23 E-value=48 Score=26.31 Aligned_cols=32 Identities=6% Similarity=-0.005 Sum_probs=28.1
Q ss_pred EEEEEEECCCCcccCceeEEEeCcEEEEEEeCc
Q 035730 72 RCNQAFPIPSNCKIDKIHAKWNNAILTVTMPKE 104 (309)
Q Consensus 72 rF~R~f~LPe~VD~e~IkAsLsDGVLtItLPK~ 104 (309)
.|.-.+.|| +++++.|.-.+.||.|+|+--+.
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~ge~~ 39 (83)
T cd06477 8 MFQILLDVV-QFRPEDIIIQVFEGWLLIKGQHG 39 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 367788887 89999999999999999999875
No 52
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=38.13 E-value=74 Score=24.78 Aligned_cols=32 Identities=13% Similarity=0.216 Sum_probs=26.7
Q ss_pred EEEEEEECCCCcccCceeEEEeCcEEEEEEeCc
Q 035730 72 RCNQAFPIPSNCKIDKIHAKWNNAILTVTMPKE 104 (309)
Q Consensus 72 rF~R~f~LPe~VD~e~IkAsLsDGVLtItLPK~ 104 (309)
.|.-.+.|| +++.++|+-++.++.|.|+.-+.
T Consensus 8 ~~~i~~~lp-G~~~edi~I~~~~~~L~I~g~~~ 39 (102)
T PF00011_consen 8 EYIIKVDLP-GFDKEDIKIKVDDNKLVISGKRK 39 (102)
T ss_dssp EEEEEEE-T-TS-GGGEEEEEETTEEEEEEEEE
T ss_pred EEEEEEECC-CCChHHEEEEEecCccceeceee
Confidence 366788998 89999999999999999999886
No 53
>PRK10743 heat shock protein IbpA; Provisional
Probab=37.30 E-value=48 Score=28.68 Aligned_cols=31 Identities=10% Similarity=0.135 Sum_probs=26.0
Q ss_pred EEEEEECCCCcccCceeEEEeCcEEEEEEeCc
Q 035730 73 CNQAFPIPSNCKIDKIHAKWNNAILTVTMPKE 104 (309)
Q Consensus 73 F~R~f~LPe~VD~e~IkAsLsDGVLtItLPK~ 104 (309)
|.-...|| +++.++|.-.+.||+|+|..-+.
T Consensus 47 ~~v~aelP-Gv~kedi~V~v~~~~LtI~ge~~ 77 (137)
T PRK10743 47 YRIAIAVA-GFAESELEITAQDNLLVVKGAHA 77 (137)
T ss_pred EEEEEECC-CCCHHHeEEEEECCEEEEEEEEC
Confidence 44466777 89999999999999999998764
No 54
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=37.30 E-value=54 Score=25.84 Aligned_cols=30 Identities=3% Similarity=0.035 Sum_probs=26.4
Q ss_pred EEEEEECCCCcccCceeEEEeCcEEEEEEeC
Q 035730 73 CNQAFPIPSNCKIDKIHAKWNNAILTVTMPK 103 (309)
Q Consensus 73 F~R~f~LPe~VD~e~IkAsLsDGVLtItLPK 103 (309)
|.-.+.|| +++++.|.-.+.||+|+|+.-+
T Consensus 12 ~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~ 41 (86)
T cd06497 12 FTIYLDVK-HFSPEDLTVKVLDDYVEIHGKH 41 (86)
T ss_pred EEEEEECC-CCCHHHeEEEEECCEEEEEEEE
Confidence 66678887 8999999999999999999865
No 55
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=37.20 E-value=63 Score=25.35 Aligned_cols=32 Identities=22% Similarity=0.225 Sum_probs=28.2
Q ss_pred EEEEEECCCCcccCceeEEEeCcEEEEEEeCcC
Q 035730 73 CNQAFPIPSNCKIDKIHAKWNNAILTVTMPKET 105 (309)
Q Consensus 73 F~R~f~LPe~VD~e~IkAsLsDGVLtItLPK~~ 105 (309)
|.-.+.|| ++..++|.-.+.++.|+|+..+..
T Consensus 13 ~~v~~~lP-G~~kedi~v~~~~~~L~I~g~~~~ 44 (90)
T cd06470 13 YRITLAVA-GFSEDDLEIEVENNQLTVTGKKAD 44 (90)
T ss_pred EEEEEECC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 66788998 699999999999999999988753
No 56
>PF14730 DUF4468: Domain of unknown function (DUF4468) with TBP-like fold
Probab=36.37 E-value=1.4e+02 Score=23.53 Aligned_cols=66 Identities=14% Similarity=0.280 Sum_probs=35.3
Q ss_pred EEEEEcCCCCCCCe-----------------EEEE-EecCCEEEEEEEEEccCCeEEEEEEEE-ECCCCcccCceeEEEe
Q 035730 33 ILLVHLPDFTKEQI-----------------RITC-VRSSRIVRVTGERQLGDNKWSRCNQAF-PIPSNCKIDKIHAKWN 93 (309)
Q Consensus 33 vL~vDLPGfkpEDI-----------------kV~v-Vdeg~~LtIsGere~~~~k~~rF~R~f-~LPe~VD~e~IkAsLs 93 (309)
.-.+++||.++++| .|.+ ..+.+.|...|.- |..|...+ .|...-=.=.+.+.++
T Consensus 2 ~~~i~vpg~sk~~ly~~~~~W~~~~~~~~~s~I~~~dke~g~I~~~g~~------~~~f~~~~ls~~~~~i~y~l~i~~k 75 (91)
T PF14730_consen 2 TKVIEVPGMSKDQLYDRAKKWLAKNFKSANSVIQYSDKEEGTIIAKGEE------WLVFSSSFLSLDRTRINYTLIIDCK 75 (91)
T ss_pred cEEEEcCCCCHHHHHHHHHHHHHHhcccccceEEEEcCCCCEEEEEEEE------EEEEccccccccceEEEEEEEEEEE
Confidence 44577777776644 3332 2234666666643 22233221 1222211223677888
Q ss_pred CcEEEEEEeCc
Q 035730 94 NAILTVTMPKE 104 (309)
Q Consensus 94 DGVLtItLPK~ 104 (309)
||-.++++-+.
T Consensus 76 Dgk~r~~~~~i 86 (91)
T PF14730_consen 76 DGKYRLTITNI 86 (91)
T ss_pred CCEEEEEEEEE
Confidence 99999988653
No 57
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=36.02 E-value=64 Score=25.45 Aligned_cols=31 Identities=16% Similarity=0.121 Sum_probs=27.6
Q ss_pred EEEEEECCCCcccCceeEEEeCcEEEEEEeCc
Q 035730 73 CNQAFPIPSNCKIDKIHAKWNNAILTVTMPKE 104 (309)
Q Consensus 73 F~R~f~LPe~VD~e~IkAsLsDGVLtItLPK~ 104 (309)
|.-.+.|| +++++.|.-++.+|.|+|..-+.
T Consensus 10 ~~v~~dlp-G~~pedi~V~v~~~~L~I~ger~ 40 (81)
T cd06479 10 YQFAVDVS-DFSPEDIIVTTSNNQIEVHAEKL 40 (81)
T ss_pred EEEEEECC-CCCHHHeEEEEECCEEEEEEEEe
Confidence 67788998 89999999999999999998764
No 58
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=35.50 E-value=80 Score=23.33 Aligned_cols=40 Identities=10% Similarity=0.165 Sum_probs=30.0
Q ss_pred CeEEEEEEcCC-CCCCCeEEEEEecCCEEEEEEEEEccCCeEEE
Q 035730 30 ENNILLVHLPD-FTKEQIRITCVRSSRIVRVTGERQLGDNKWSR 72 (309)
Q Consensus 30 d~yvL~vDLPG-fkpEDIkV~vVdeg~~LtIsGere~~~~k~~r 72 (309)
+.|.+.++|++ +.+++.+..+ .++.|.|.=.+... +.|.+
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~--~~~~l~i~L~K~~~-~~W~~ 76 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKI--GNGVLVFTLVKKEP-GIWEA 76 (78)
T ss_pred CCEEEEEeCcccccccccEEEE--eCCEEEEEEEeCCC-Ccccc
Confidence 56888899987 7999999997 56789888655433 45654
No 59
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=29.79 E-value=1.7e+02 Score=27.16 Aligned_cols=75 Identities=15% Similarity=0.218 Sum_probs=54.0
Q ss_pred cccceeeEEcCCeEEEEEEcC-CC-CCCCeEEEEEecCCEEEEEEEEE--ccCCeEEEEEEEEECCCCcccCceeEEEeC
Q 035730 19 FHPMSEWLDEPENNILLVHLP-DF-TKEQIRITCVRSSRIVRVTGERQ--LGDNKWSRCNQAFPIPSNCKIDKIHAKWNN 94 (309)
Q Consensus 19 ~~P~vDI~Etdd~yvL~vDLP-Gf-kpEDIkV~vVdeg~~LtIsGere--~~~~k~~rF~R~f~LPe~VD~e~IkAsLsD 94 (309)
-.+.|.|.++=..+.|.+.|| |+ +..+|.+.+ ..+.|.|.-..+ .-+| .|...|+.+...=.++|
T Consensus 17 ~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~I--q~~hI~V~~kg~~~ildG---------~L~~~vk~des~WtiEd 85 (179)
T KOG2265|consen 17 DEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSI--QSKHIKVGLKGQPPILDG---------ELSHSVKVDESTWTIED 85 (179)
T ss_pred cccceeeeeehhheEEEeecCCCCcccceEEEEe--eeeEEEEecCCCCceecC---------ccccccccccceEEecC
Confidence 457899999999999998885 88 999999998 455666653221 1112 34566788876677888
Q ss_pred cEEEEEEeCc
Q 035730 95 AILTVTMPKE 104 (309)
Q Consensus 95 GVLtItLPK~ 104 (309)
|.+.|.+-+.
T Consensus 86 ~k~i~i~l~K 95 (179)
T KOG2265|consen 86 GKMIVILLKK 95 (179)
T ss_pred CEEEEEEeec
Confidence 8888777665
No 60
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=28.79 E-value=92 Score=24.49 Aligned_cols=30 Identities=3% Similarity=0.092 Sum_probs=26.3
Q ss_pred EEEEEECCCCcccCceeEEEeCcEEEEEEeC
Q 035730 73 CNQAFPIPSNCKIDKIHAKWNNAILTVTMPK 103 (309)
Q Consensus 73 F~R~f~LPe~VD~e~IkAsLsDGVLtItLPK 103 (309)
|.-.+.|| ++++++|.-.+.++.|+|..-+
T Consensus 9 ~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~ 38 (84)
T cd06498 9 FSVNLDVK-HFSPEELKVKVLGDFIEIHGKH 38 (84)
T ss_pred EEEEEECC-CCCHHHeEEEEECCEEEEEEEE
Confidence 66788886 8999999999999999999854
No 61
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=27.90 E-value=1.1e+02 Score=23.89 Aligned_cols=31 Identities=10% Similarity=0.240 Sum_probs=26.0
Q ss_pred EEEEEECCCCcccCceeEEEeC-cEEEEEEeCc
Q 035730 73 CNQAFPIPSNCKIDKIHAKWNN-AILTVTMPKE 104 (309)
Q Consensus 73 F~R~f~LPe~VD~e~IkAsLsD-GVLtItLPK~ 104 (309)
|.-.+.|| ++..++|.-.+.+ ++|+|+--+.
T Consensus 11 ~~i~~~lP-Gv~~edi~i~v~~~~~L~I~g~~~ 42 (92)
T cd06472 11 HVFKADVP-GVKKEDVKVEVEDGRVLRISGERK 42 (92)
T ss_pred EEEEEECC-CCChHhEEEEEeCCCEEEEEEEec
Confidence 66688898 5899999999986 5999999764
No 62
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=27.56 E-value=1.6e+02 Score=24.34 Aligned_cols=39 Identities=8% Similarity=-0.026 Sum_probs=27.4
Q ss_pred ccceeeEEcCCeEEEEEEcCCC-----CCCCeEEEEEecCCEEEEE
Q 035730 20 HPMSEWLDEPENNILLVHLPDF-----TKEQIRITCVRSSRIVRVT 60 (309)
Q Consensus 20 ~P~vDI~Etdd~yvL~vDLPGf-----kpEDIkV~vVdeg~~LtIs 60 (309)
.|++.|+++++.|.|.+--+.. .++...|.- +++.|-|.
T Consensus 25 ~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~--~~g~~fI~ 68 (95)
T PF12992_consen 25 KPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQE--EDGNLFIE 68 (95)
T ss_pred CCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEE--eCCEEEEe
Confidence 6999999999999999755433 566666663 34455444
No 63
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=27.33 E-value=78 Score=23.60 Aligned_cols=47 Identities=26% Similarity=0.464 Sum_probs=31.2
Q ss_pred CCCeEEEEEecCCEEEEEEEEEccCCeEEEEEEEEECCCCcccCceeEEEeCcEEEEEEeC
Q 035730 43 KEQIRITCVRSSRIVRVTGERQLGDNKWSRCNQAFPIPSNCKIDKIHAKWNNAILTVTMPK 103 (309)
Q Consensus 43 pEDIkV~vVdeg~~LtIsGere~~~~k~~rF~R~f~LPe~VD~e~IkAsLsDGVLtItLPK 103 (309)
|+.++|++ +++.+.+.|.+- ...+.||..+.. ....+|+.|.+....
T Consensus 2 P~gV~v~~--~~~~i~v~G~~g---------~l~~~~~~~v~v---~~~~~~~~~~~~~~~ 48 (77)
T PF00347_consen 2 PEGVKVTI--KGNIITVKGPKG---------ELSRPIPPGVKV---EIKVEDNKITVSVLS 48 (77)
T ss_dssp STTCEEEE--ETTEEEEESSSS---------EEEEEETTTEEE---EEEEETTSEEEEEEE
T ss_pred CCcEEEEE--eCcEEEEECCCE---------eEEEECCCCeeE---EEEcCCCceEEEECc
Confidence 57889997 568899998651 246677766442 233668877776653
No 64
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=27.26 E-value=1e+02 Score=24.22 Aligned_cols=31 Identities=10% Similarity=0.204 Sum_probs=27.3
Q ss_pred EEEEEECCCCcccCceeEEEeCcEEEEEEeCc
Q 035730 73 CNQAFPIPSNCKIDKIHAKWNNAILTVTMPKE 104 (309)
Q Consensus 73 F~R~f~LPe~VD~e~IkAsLsDGVLtItLPK~ 104 (309)
|.-.+.|| +++.+.|.-++.++.|+|+.-+.
T Consensus 12 ~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~ 42 (86)
T cd06475 12 WKVSLDVN-HFAPEELVVKTKDGVVEITGKHE 42 (86)
T ss_pred EEEEEECC-CCCHHHEEEEEECCEEEEEEEEC
Confidence 77788887 89999999999999999998653
No 65
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=27.25 E-value=45 Score=30.11 Aligned_cols=23 Identities=9% Similarity=0.276 Sum_probs=16.8
Q ss_pred CCcccCceeEEEeCcEEEEEEeC
Q 035730 81 SNCKIDKIHAKWNNAILTVTMPK 103 (309)
Q Consensus 81 e~VD~e~IkAsLsDGVLtItLPK 103 (309)
+.+..++--+.|.||||+|.|+-
T Consensus 67 e~~~~~~~Dv~y~~GVLTl~lg~ 89 (156)
T KOG3413|consen 67 EEVPGEGFDVDYADGVLTLKLGS 89 (156)
T ss_pred hhcCccccccccccceEEEEecC
Confidence 33444445578999999999993
No 66
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=26.25 E-value=1.4e+02 Score=21.39 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=30.1
Q ss_pred CCeEEEEEEcCC-CCCCCeEEEEEecCCEEEEEEEEEccCCeEE
Q 035730 29 PENNILLVHLPD-FTKEQIRITCVRSSRIVRVTGERQLGDNKWS 71 (309)
Q Consensus 29 dd~yvL~vDLPG-fkpEDIkV~vVdeg~~LtIsGere~~~~k~~ 71 (309)
+..|.+.++|++ +.+++...++ .++.|.|.=.+...+..|.
T Consensus 40 ~~~~~~~~~L~~~I~~~~s~~~~--~~~~l~i~L~K~~~~~~W~ 81 (84)
T cd06463 40 GKEYLLEGELFGPIDPEESKWTV--EDRKIEITLKKKEPGEWWP 81 (84)
T ss_pred CCceEEeeEccCccchhhcEEEE--eCCEEEEEEEECCCCCCCc
Confidence 477888889987 7888888887 5678888866654434454
No 67
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=25.97 E-value=91 Score=27.28 Aligned_cols=31 Identities=13% Similarity=0.215 Sum_probs=25.8
Q ss_pred EEEEEECCCCcccCceeEEEeCcEEEEEEeCc
Q 035730 73 CNQAFPIPSNCKIDKIHAKWNNAILTVTMPKE 104 (309)
Q Consensus 73 F~R~f~LPe~VD~e~IkAsLsDGVLtItLPK~ 104 (309)
|.-...|| +++.++|.-.+++|+|+|+.-+.
T Consensus 45 y~v~adlP-Gv~kedi~V~v~~~~LtI~ge~~ 75 (142)
T PRK11597 45 YRITLALA-GFRQEDLDIQLEGTRLTVKGTPE 75 (142)
T ss_pred EEEEEEeC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 44466677 89999999999999999998754
No 68
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=25.59 E-value=1.2e+02 Score=24.00 Aligned_cols=32 Identities=13% Similarity=0.166 Sum_probs=27.5
Q ss_pred EEEEEEECCCCcccCceeEEEeCcEEEEEEeCc
Q 035730 72 RCNQAFPIPSNCKIDKIHAKWNNAILTVTMPKE 104 (309)
Q Consensus 72 rF~R~f~LPe~VD~e~IkAsLsDGVLtItLPK~ 104 (309)
.|.-.+.|| ++.+++|.-++.++.|+|..-+.
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~ 39 (87)
T cd06481 8 GFSLKLDVR-GFSPEDLSVRVDGRKLVVTGKRE 39 (87)
T ss_pred eEEEEEECC-CCChHHeEEEEECCEEEEEEEEe
Confidence 366788886 78999999999999999999764
No 69
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=25.56 E-value=2.7e+02 Score=25.06 Aligned_cols=46 Identities=15% Similarity=0.209 Sum_probs=30.9
Q ss_pred CCCeEEEEEecCCEEEEEEEEEccCCeEEEEEEEEECCCCcccCceeEEEeCcEEEEEEeC
Q 035730 43 KEQIRITCVRSSRIVRVTGERQLGDNKWSRCNQAFPIPSNCKIDKIHAKWNNAILTVTMPK 103 (309)
Q Consensus 43 pEDIkV~vVdeg~~LtIsGere~~~~k~~rF~R~f~LPe~VD~e~IkAsLsDGVLtItLPK 103 (309)
|++++|++ +++.|+|+|.+ +...+.|. |. .+...++++-|.|..+.
T Consensus 7 P~~V~v~i--~~~~i~vkGp~-------G~L~~~~~-~~-----~v~i~~~~~~i~v~~~~ 52 (170)
T TIGR03653 7 PEGVSVTI--EGNIVTVKGPK-------GEVTRELW-YP-----GIEISVEDGKVVIETDF 52 (170)
T ss_pred CCCCEEEE--eCCEEEEECCC-------eEEEEEEe-CC-----cEEEEEeCCEEEEEeCC
Confidence 78899998 67899999976 22333332 33 34456788888888553
No 70
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=25.45 E-value=2.4e+02 Score=25.23 Aligned_cols=44 Identities=20% Similarity=0.400 Sum_probs=30.4
Q ss_pred CCCeEEEEEecCCEEEEEEEEEccCCeEEEEEEEEECCCCcccCceeEEEeCcEEEEEEe
Q 035730 43 KEQIRITCVRSSRIVRVTGERQLGDNKWSRCNQAFPIPSNCKIDKIHAKWNNAILTVTMP 102 (309)
Q Consensus 43 pEDIkV~vVdeg~~LtIsGere~~~~k~~rF~R~f~LPe~VD~e~IkAsLsDGVLtItLP 102 (309)
|++++|++ +++.|+|+|.+ +...+.| |.. +...++|+.|.|...
T Consensus 11 P~~V~v~~--~~~~v~v~Gp~-------G~l~~~l--~~~-----i~i~~~~~~i~v~~~ 54 (175)
T TIGR03654 11 PAGVEVTI--DGNVVTVKGPK-------GELSRTL--HPG-----VTVKVEDGQLTVSRP 54 (175)
T ss_pred CCCcEEEE--eCCEEEEEcCC-------eEEEEEc--CCC-----eEEEEECCEEEEEec
Confidence 78999998 67899999976 2233444 443 345667887777765
No 71
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=23.69 E-value=2.8e+02 Score=25.25 Aligned_cols=46 Identities=13% Similarity=0.268 Sum_probs=30.5
Q ss_pred CCCCeEEEEEecCCEEEEEEEEEccCCeEEEEEEEEECCCCcccCceeEEEeCcEEEEEEe
Q 035730 42 TKEQIRITCVRSSRIVRVTGERQLGDNKWSRCNQAFPIPSNCKIDKIHAKWNNAILTVTMP 102 (309)
Q Consensus 42 kpEDIkV~vVdeg~~LtIsGere~~~~k~~rF~R~f~LPe~VD~e~IkAsLsDGVLtItLP 102 (309)
=|++++|++ +++.|+|+|.+ +...+.|.-+ .+...++||-|.|...
T Consensus 12 IP~~V~v~i--~~~~v~VkGp~-------G~L~~~~~~~------~v~i~~~~~~i~v~~~ 57 (180)
T PRK05518 12 IPEGVTVEI--EGLVVTVKGPK-------GELTRDFWYP------GVTISVEDGKVVIETE 57 (180)
T ss_pred cCCCCEEEE--ECCEEEEECCC-------eEEEEEecCC------cEEEEEECCEEEEEEC
Confidence 378999998 67899999976 2233333321 3445668888877755
No 72
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=23.25 E-value=66 Score=30.82 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=20.3
Q ss_pred hhhHHhhhhhHHHHHhhhcceEEEEeccc
Q 035730 278 DKQLLINIGVAALVIVALGAYVSYSIGSK 306 (309)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (309)
--|+.+=..+|+|||+.|.||.-+.--+.
T Consensus 272 ~vPIaVG~~La~lvlivLiaYli~Rrr~~ 300 (306)
T PF01299_consen 272 LVPIAVGAALAGLVLIVLIAYLIGRRRSR 300 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHhheeEecccc
Confidence 34555555678899999999987665443
No 73
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=22.89 E-value=1.4e+02 Score=21.35 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=18.6
Q ss_pred CCCCCCCeEEEEEecCCEEEEEEEEEc
Q 035730 39 PDFTKEQIRITCVRSSRIVRVTGERQL 65 (309)
Q Consensus 39 PGfkpEDIkV~vVdeg~~LtIsGere~ 65 (309)
++|...+|.|.+ .++.++++|.-..
T Consensus 12 ~~~~~~~i~v~v--~~g~v~L~G~v~s 36 (64)
T PF04972_consen 12 PWLPDSNISVSV--ENGVVTLSGEVPS 36 (64)
T ss_dssp -CTT-TTEEEEE--ECTEEEEEEEESS
T ss_pred cccCCCeEEEEE--ECCEEEEEeeCcH
Confidence 367777899997 5789999998643
No 74
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=21.23 E-value=17 Score=23.49 Aligned_cols=17 Identities=35% Similarity=0.473 Sum_probs=12.3
Q ss_pred hhHHHHHhhhcceEEEE
Q 035730 286 GVAALVIVALGAYVSYS 302 (309)
Q Consensus 286 ~~~~~~~~~~~~~~~~~ 302 (309)
.++++|.++|.+|..|-
T Consensus 2 ~l~~~v~~~L~~YL~~a 18 (25)
T PF09604_consen 2 ILGGIVAVALFVYLFYA 18 (25)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45677788888887663
No 75
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=21.13 E-value=1.8e+02 Score=21.83 Aligned_cols=30 Identities=17% Similarity=0.320 Sum_probs=25.5
Q ss_pred EEEEEECCCCcccCceeEEEeCcEEEEEEe
Q 035730 73 CNQAFPIPSNCKIDKIHAKWNNAILTVTMP 102 (309)
Q Consensus 73 F~R~f~LPe~VD~e~IkAsLsDGVLtItLP 102 (309)
..=.|.||.+++.+++...+.+.-|.|.+.
T Consensus 10 V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 10 VTVTIPLPEGTKSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred EEEEEECCCCCcceeEEEEEEcCEEEEEEC
Confidence 444678999999999999999888889886
No 76
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=21.11 E-value=1.8e+02 Score=21.25 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=28.8
Q ss_pred EEEEEEECCCCcccCceeEEEeCcEEEEEEeCcC
Q 035730 72 RCNQAFPIPSNCKIDKIHAKWNNAILTVTMPKET 105 (309)
Q Consensus 72 rF~R~f~LPe~VD~e~IkAsLsDGVLtItLPK~~ 105 (309)
.|.-.+.||. ++.++|.-.+.++.|.|+.-+..
T Consensus 8 ~~~i~~~lpg-~~~~~i~V~v~~~~l~I~g~~~~ 40 (88)
T cd06464 8 AYVVEADLPG-FKKEDIKVEVEDGVLTISGEREE 40 (88)
T ss_pred EEEEEEECCC-CCHHHeEEEEECCEEEEEEEEec
Confidence 4777899985 99999999999999999988863
No 77
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=21.05 E-value=2.7e+02 Score=25.47 Aligned_cols=52 Identities=23% Similarity=0.173 Sum_probs=33.3
Q ss_pred CCCCCCCeEEEEEecCCEEEEEEEEEccCCeEEEEEEEEECCCCcccCceeEEEeCcEEEEEEeC
Q 035730 39 PDFTKEQIRITCVRSSRIVRVTGERQLGDNKWSRCNQAFPIPSNCKIDKIHAKWNNAILTVTMPK 103 (309)
Q Consensus 39 PGfkpEDIkV~vVdeg~~LtIsGere~~~~k~~rF~R~f~LPe~VD~e~IkAsLsDGVLtItLPK 103 (309)
|=.=|++++|++ +++.|+|+|.+ +...|.|.=| . ..|....+||.|.|..+.
T Consensus 9 ~I~IP~~V~V~i--~~~~v~VkGp~-------G~L~~~~~~~-~---~~i~i~~~~~~i~v~~~~ 60 (190)
T PTZ00027 9 KIRIPEGVTVTV--KSRKVTVTGKY-------GELTRSFRHL-P---VDIKLSKDGKYIKVEMWF 60 (190)
T ss_pred CEecCCCCEEEE--ECCEEEEECCC-------ceEEEEecCC-C---ceEEEEeCCCEEEEEeCC
Confidence 333489999998 67899999976 2233433211 1 235566788888887553
No 78
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=20.92 E-value=30 Score=33.81 Aligned_cols=40 Identities=23% Similarity=0.356 Sum_probs=31.0
Q ss_pred hhhHhhhhhccCccCCcchhhhHHhhhhhHHHHHhhhcceEE
Q 035730 259 SITAAVMKDVKGIATDQNEDKQLLINIGVAALVIVALGAYVS 300 (309)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (309)
||..+..-+|.|+...-..-.+|+...| .|..+|+|.|.+
T Consensus 215 sI~t~f~~lg~G~~~lltD~~kl~~~vg--g~T~LA~GvYta 254 (276)
T PF12037_consen 215 SINTTFSHLGEGFRALLTDRDKLTTTVG--GLTALAAGVYTA 254 (276)
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHH--HHHHHHHHHHHh
Confidence 8888999999998877666666665544 677889999965
No 79
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=20.46 E-value=2.8e+02 Score=24.83 Aligned_cols=44 Identities=20% Similarity=0.382 Sum_probs=30.1
Q ss_pred CCCeEEEEEecCCEEEEEEEEEccCCeEEEEEEEEECCCCcccCceeEEEeCcEEEEEEe
Q 035730 43 KEQIRITCVRSSRIVRVTGERQLGDNKWSRCNQAFPIPSNCKIDKIHAKWNNAILTVTMP 102 (309)
Q Consensus 43 pEDIkV~vVdeg~~LtIsGere~~~~k~~rF~R~f~LPe~VD~e~IkAsLsDGVLtItLP 102 (309)
|++++|++ +++.|+|+|.+ +...+.| |..+ ...++|+-|.|...
T Consensus 12 P~~V~v~~--~~~~v~vkGp~-------G~l~~~~--~~~v-----~i~~~~~~i~v~~~ 55 (178)
T PRK05498 12 PAGVEVTI--NGNVVTVKGPK-------GELSRTL--NPDV-----TVKVEDNEITVTRP 55 (178)
T ss_pred CCCCEEEE--ECCEEEEECCC-------EEEEEEc--CCCe-----EEEEECCEEEEEcC
Confidence 78999997 67899999976 2344444 4433 34567787777754
No 80
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=20.17 E-value=1.6e+02 Score=26.67 Aligned_cols=40 Identities=18% Similarity=0.325 Sum_probs=28.5
Q ss_pred EEcC-CCCCCCeEEEEEecCCEEEEEEEEEccCCeEEEEEEEEEC
Q 035730 36 VHLP-DFTKEQIRITCVRSSRIVRVTGERQLGDNKWSRCNQAFPI 79 (309)
Q Consensus 36 vDLP-GfkpEDIkV~vVdeg~~LtIsGere~~~~k~~rF~R~f~L 79 (309)
.-|| |+.++.|.=.| ..+|+|+|+|.+..... . +.|.+++
T Consensus 121 y~LP~~vdp~~V~S~L-S~dGvLtI~ap~~~~~~--~-~er~ipI 161 (173)
T KOG3591|consen 121 YLLPEDVDPTSVTSTL-SSDGVLTIEAPKPPPKQ--D-NERSIPI 161 (173)
T ss_pred ecCCCCCChhheEEee-CCCceEEEEccCCCCcC--c-cceEEeE
Confidence 5576 99999999997 56889999997654211 1 4555555
No 81
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=20.14 E-value=61 Score=32.38 Aligned_cols=80 Identities=11% Similarity=0.140 Sum_probs=59.1
Q ss_pred cceeeEEcCCeEEEEEEcCCCCCCCeEEEEEecCCEEEEEEEEEccCCeEEEEEEEEECCCCcccCceeEEEeCcEEEEE
Q 035730 21 PMSEWLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLGDNKWSRCNQAFPIPSNCKIDKIHAKWNNAILTVT 100 (309)
Q Consensus 21 P~vDI~Etdd~yvL~vDLPGfkpEDIkV~vVdeg~~LtIsGere~~~~k~~rF~R~f~LPe~VD~e~IkAsLsDGVLtIt 100 (309)
-.|++.++.+...|-+--|-+..++|++-+ ++|.|.|+-.-+.. +.| |.-.+.|-..|+++...-++---++.|.
T Consensus 177 i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~--e~NTL~I~~q~~~~-~~~--~~~~~~Ly~ev~P~~~s~k~fsK~~e~~ 251 (368)
T COG5091 177 IAYDFSETSDTAIIFIYRPPVGDEQVSPVL--EGNTLSISYQPRRL-RLW--NDITISLYKEVYPDIRSIKSFSKRVEVH 251 (368)
T ss_pred eeeeccccceeEEEEEecCCCCccccceee--cCCcceeeeecccc-chH--HHhhhhhhhhcCcchhhhhhcchhheeh
Confidence 357888888888888888899999999998 78899998654221 112 4456677788999876555556788888
Q ss_pred EeCcC
Q 035730 101 MPKET 105 (309)
Q Consensus 101 LPK~~ 105 (309)
|-|..
T Consensus 252 l~KV~ 256 (368)
T COG5091 252 LRKVE 256 (368)
T ss_pred hhhhh
Confidence 88763
Done!