RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 035730
(309 letters)
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 88
Score = 55.6 bits (135), Expect = 3e-10
Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 12/90 (13%)
Query: 24 EWLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLGDNK----------WSRC 73
+ + + ++ LP F KE I++ ++ ++GER+ + + +
Sbjct: 1 DVYETDDAYVVEADLPGFKKEDIKVEVED--GVLTISGEREEEEEEEENYLRRERSYGSF 58
Query: 74 NQAFPIPSNCKIDKIHAKWNNAILTVTMPK 103
+++F +P + DKI A N +LT+T+PK
Sbjct: 59 SRSFRLPEDVDPDKIKASLENGVLTITLPK 88
>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in
Saccharomyces cerevisiae (Sc) small heat shock protein
(Hsp)26 and similar proteins. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. ScHsp26 is
temperature-regulated, it switches from an inactive to a
chaperone-active form upon elevation in temperature. It
associates into large 24-mers storage forms which upon
heat shock disassociate into dimers. These dimers
initiate the interaction with non-native substrate
proteins and re-assemble into large globular assemblies
having one monomer of substrate bound per dimer. This
group also contains Arabidopsis thaliana (Ath) Hsp15.7,
a peroxisomal matrix protein which can complement the
morphological phenotype of S. cerevisiae mutants
deficient in Hsps26. AthHsp15.7 is minimally expressed
under normal conditions and is strongly induced by heat
and oxidative stress. Also belonging to this group is
wheat HSP16.9 which differs in quaternary structure from
the shell-type particles of ScHsp26, it assembles as a
dodecameric double disc, with each disc organized as a
trimer of dimers.
Length = 92
Score = 48.8 bits (117), Expect = 1e-07
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 12/90 (13%)
Query: 25 WLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLGDNK----WSRCNQA---- 76
W + PE ++ +P KE +++ V R++R++GER+ + K W R ++
Sbjct: 4 WKETPEAHVFKADVPGVKKEDVKVE-VEDGRVLRISGERKKEEEKKGDDWHRVERSSGRF 62
Query: 77 ---FPIPSNCKIDKIHAKWNNAILTVTMPK 103
F +P N D++ A N +LTVT+PK
Sbjct: 63 VRRFRLPENADADEVKAFLENGVLTVTVPK 92
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the
alpha-crystallin domain (ACD) of alpha-crystallin-type
small heat shock proteins (sHsps) and a similar domain
found in p23-like proteins. sHsps are small stress
induced proteins with monomeric masses between 12 -43
kDa, whose common feature is this ACD. sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps. p23 is a cochaperone of the Hsp90 chaperoning
pathway. It binds Hsp90 and participates in the folding
of a number of Hsp90 clients including the progesterone
receptor. p23 also has a passive chaperoning activity.
p23 in addition may act as the cytosolic prostaglandin
E2 synthase. Included in this family is the p23-like
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1) and the p23-like domains of human
butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
distribution) C, Melusin, and NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR).
Length = 80
Score = 47.6 bits (114), Expect = 2e-07
Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 25 WLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLGDNKWSRCNQ---AFPIPS 81
W + ++ V LP KE I++ ++ ++G+R+ + + + +F +P
Sbjct: 1 WYQTDDEVVVTVDLPGVKKEDIKVEV--EDNVLTISGKREEEEERERSYGEFERSFELPE 58
Query: 82 NCKIDKIHAKWNNAILTVTMPK 103
+ +K A N +L +T+PK
Sbjct: 59 DVDPEKSKASLENGVLEITLPK 80
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 146
Score = 44.3 bits (105), Expect = 1e-05
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 13/104 (12%)
Query: 21 PMSEWLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLGDNKWS-------RC 73
P + + + + LP KE I IT ++ + + GER+ + + R
Sbjct: 41 PPVDIEETDDEYRITAELPGVDKEDIEITVEGNT--LTIRGEREEEEEEEEEGYLRRERA 98
Query: 74 NQAF----PIPSNCKIDKIHAKWNNAILTVTMPKETITQPQPRK 113
F +P + I AK+ N +LTVT+PK + +P++
Sbjct: 99 YGEFERTFRLPEKVDPEVIKAKYKNGLLTVTLPKAEPEEKKPKR 142
>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family.
Length = 101
Score = 42.2 bits (100), Expect = 2e-05
Identities = 21/97 (21%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 24 EWLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLGDNKWSRC-------NQA 76
+ ++ + ++ + +P F E++++ + +V+ E++ D+ R ++
Sbjct: 1 DIKEDKDAFVVKLDVPGFKPEELKVKVEDNRVLVKGKHEKEEEDDHGLRSERSYRSFSRK 60
Query: 77 FPIPSNCKIDKIHAKWNNAILTVTMPKETITQPQPRK 113
F +P N DK+ A + +LTVT+PK + +PR+
Sbjct: 61 FVLPENADPDKVKASLKDGVLTVTVPKLEPPEKKPRR 97
>gnl|CDD|182490 PRK10478, PRK10478, putative PTS system fructose-like transporter
subunit EIIC; Provisional.
Length = 359
Score = 35.2 bits (81), Expect = 0.031
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 262 AAVMKDVKGIATDQNEDKQL--LINIGVA--ALVIVALGAYVSYSIGSKS 307
+VM KG D D L L +IGVA L++ L AY+ YSI +S
Sbjct: 35 VSVMLYGKGAVPDAVADPNLKKLFDIGVAGLTLMVPFLAAYIGYSIADRS 84
>gnl|CDD|107228 cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an
alpha crystallin domain (ACD) similar to Lactobacillus
plantarum (Lp) small heat shock proteins (sHsp) HSP
18.5, HSP 18.55 and HSP 19.3. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. Transcription
of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is
regulated by a variety of stresses including heat, cold
and ethanol. Early growing L. plantarum cells contain
elevated levels of these mRNAs which rapidly fall of as
the cells enter stationary phase. Also belonging to this
group is Bifidobacterium breve (Bb) HSP20 and Oenococcus
oenis (syn. Leuconostoc oenos) (Oo) HSP18.
Transcription of the gene encoding BbHSP20 is strongly
induced following heat or osmotic shock, and that of the
gene encoding OoHSP18 following heat, ethanol or acid
shock. OoHSP18 is peripherally associated with the
cytoplasmic membrane.
Length = 93
Score = 32.8 bits (76), Expect = 0.036
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 6/42 (14%)
Query: 62 ERQLGDNKWSRCNQAFPIPSNCKIDKIHAKWNNAILTVTMPK 103
ER G +++F +P N ++I AK+ N +L +T+PK
Sbjct: 58 ERYYG-----SFSRSFYLP-NVDEEEIKAKYENGVLKITLPK 93
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 34.8 bits (81), Expect = 0.051
Identities = 29/161 (18%), Positives = 61/161 (37%), Gaps = 3/161 (1%)
Query: 105 TITQPQPRKEEPKTTQKSPKAAEHKEPKSSKDFQQVSASQKAADEEPKSSKDFQQAAASP 164
T+ + + RKEE K + AE +E +++ ++ A AA ++++ A A+
Sbjct: 37 TVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAA 96
Query: 165 KAADKEPKTSKDFQQITEMQNEVKSNIHGEKKEDGKSPDALTAQKSDETTFPKDAVSMNQ 224
+ A+ E + + G K + K +
Sbjct: 97 RPAEDEAARPAEAAARRPKAKKAAKKKKGPKPKKKKPKRKAARGGKRGKGGKGRRRRRGR 156
Query: 225 TDKTNEVAKAKKIDQMTQKGFTMPENVTEKE--EKKSITAA 263
+ + K K +++ ++ +PE +T E EK ++ AA
Sbjct: 157 RRRRKKKKKQKPTEKIPRE-VVIPETITVAELAEKMAVKAA 196
>gnl|CDD|233128 TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuronide) transporter.
The Glycoside-Pentoside-Hexuronide (GPH):Cation
Symporter Family (TC 2.A.2) GPH:cation symporters
catalyze uptake of sugars in symport with a monovalent
cation (H+ or Na+). Members of this family includes
transporters for melibiose, lactose, raffinose,
glucuronides, pentosides and isoprimeverose. Mutants of
two groups of these symporters (the melibiose permeases
of enteric bacteria, and the lactose permease of
Streptococcus thermophilus) have been isolated in which
altered cation specificity is observed or in which sugar
transport is uncoupled from cation symport (i.e.,
uniport is catalyzed). The various members of the family
can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+
as the symported cation. All of these proteins possess
twelve putative transmembrane a-helical spanners
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 437
Score = 34.5 bits (80), Expect = 0.053
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 11/68 (16%)
Query: 244 GFTMPENVTEKEEKKSITAAVMKDVKGIATDQNEDKQLLINIGVA---ALVIVALGA--- 297
F E +E + ++ + K + +N QLLI L
Sbjct: 191 FFGTKERYSEIPKNIEKKLSLKQIFKALF--KN--DQLLILCLAYLFYNLAFNIKNGVQV 246
Query: 298 -YVSYSIG 304
Y +Y +G
Sbjct: 247 YYFTYVLG 254
>gnl|CDD|224218 COG1299, FruA, Phosphotransferase system, fructose-specific IIC
component [Carbohydrate transport and metabolism].
Length = 343
Score = 33.7 bits (78), Expect = 0.11
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 281 LLINIGVAA--LVIVALGAYVSYSIGSK 306
LL +IG A L++ L AY++YSI +
Sbjct: 48 LLFSIGGLAFGLMVPVLAAYIAYSIADR 75
>gnl|CDD|234252 TIGR03545, TIGR03545, TIGR03545 family protein. This model
represents a relatively rare but broadly distributed
uncharacterized protein family, distributed in 1-2
percent of bacterial genomes, all of which have outer
membranes. In many of these genomes, it is part of a
two-gene pair.
Length = 555
Score = 33.5 bits (77), Expect = 0.12
Identities = 32/167 (19%), Positives = 60/167 (35%), Gaps = 7/167 (4%)
Query: 84 KIDKIHAKWNNAI---LTVTMPKETITQPQPRKEEPKTTQKSPKAAEHKEPKSSKDFQQV 140
D+ A ++I + + K P PR K+ + AE E KS K QQ
Sbjct: 121 TKDETPASAPSSIKEQKSSELKKVDSQLPDPRALLKGEDLKTVETAEEIE-KSLKAMQQK 179
Query: 141 SASQKAADEEPKSSKDFQQAAASPKAADKEPKTSKDFQQITEMQNEVKSNIHGEKKEDGK 200
+K + +++++ + K D K + Q+I E +++K +K++
Sbjct: 180 WKKRKKDLPNKQDLEEYKKRLEAIKKKDI--KNPLELQKIKEEFDKLKKEGKADKQKIKS 237
Query: 201 SPDALTAQKSDETTFPKDAVSMNQTDKTNEVAKAKKIDQMTQKGFTM 247
+ + L K + Q D + I K F +
Sbjct: 238 AKNDLQNDKKQLKADLAELKKAPQND-LKRLENKYAIKSGDLKNFAV 283
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 31.8 bits (73), Expect = 0.50
Identities = 35/167 (20%), Positives = 57/167 (34%), Gaps = 27/167 (16%)
Query: 103 KETITQPQPRKEEPKTTQKSPKAAEHKEPKSSKDFQQVSASQKAADEEPKSSKDFQQAAA 162
I + RK + + Q +AA +PK A+ AA K+ K QQAA
Sbjct: 517 SAVIAAREARKAQARARQAEKQAAAAADPK--------KAAVAAAIARAKAKKAAQQAAN 568
Query: 163 SPKAADKEPKTSKDFQQITEMQNEVKSNIHGEKKEDGKSPDALTAQKSDETTFPKDAVSM 222
+ + +PK + I + K+ + + ++ PK A
Sbjct: 569 AEAEEEVDPKKAAVAAAIARAKA----------KKAAQQAASAEPEEQVAEVDPKKA--- 615
Query: 223 NQTDKTNEVAKAKKIDQMTQKGFTMPENVTEKEEKKSITAAVMKDVK 269
AKAKK +Q E + +K+ AA + K
Sbjct: 616 -AVAAAIARAKAKKAEQQ-----ANAEPEEPVDPRKAAVAAAIARAK 656
Score = 28.0 bits (63), Expect = 7.8
Identities = 32/142 (22%), Positives = 41/142 (28%), Gaps = 21/142 (14%)
Query: 143 SQKAADEEPKSSKDFQQAAASPKAADKEPKTSKDFQQITEMQNEVKSNIHGEKKEDGKSP 202
+KAA+ KD AA + A K T Q I N + +
Sbjct: 473 HKKAAEARAAKDKDAVAAALARVKAKKAAAT----QPIVIKAGARPDNSAVIAAREARKA 528
Query: 203 DALTAQKSDETTFPKDAVSMNQTDKTNEV------AKAKKIDQMTQKGFTMPENVTEKEE 256
A Q + D K V AKAKK Q E E +
Sbjct: 529 QARARQAEKQAAAAAD-------PKKAAVAAAIARAKAKKAAQQAAN----AEAEEEVDP 577
Query: 257 KKSITAAVMKDVKGIATDQNED 278
KK+ AA + K Q
Sbjct: 578 KKAAVAAAIARAKAKKAAQQAA 599
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 31.3 bits (71), Expect = 0.56
Identities = 17/72 (23%), Positives = 27/72 (37%)
Query: 102 PKETITQPQPRKEEPKTTQKSPKAAEHKEPKSSKDFQQVSASQKAADEEPKSSKDFQQAA 161
P E T P+P +PK K K + +PK + + + SK +A
Sbjct: 70 PTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAP 129
Query: 162 ASPKAADKEPKT 173
A+P + P
Sbjct: 130 AAPNQPARPPSA 141
Score = 29.0 bits (65), Expect = 2.6
Identities = 14/105 (13%), Positives = 24/105 (22%)
Query: 99 VTMPKETITQPQPRKEEPKTTQKSPKAAEHKEPKSSKDFQQVSASQKAADEEPKSSKDFQ 158
P+ + QP+ T P + KE + + + +PK Q
Sbjct: 55 EPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQ 114
Query: 159 QAAASPKAADKEPKTSKDFQQITEMQNEVKSNIHGEKKEDGKSPD 203
P + + Q S S
Sbjct: 115 PKPKKPPSKTAAKAPAAPNQPARPPSAASASGAATGPSASYLSGL 159
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 31.6 bits (71), Expect = 0.63
Identities = 32/147 (21%), Positives = 69/147 (46%), Gaps = 5/147 (3%)
Query: 112 RKEEPKTTQKSPKAAEHKEPKSSKDFQQVSASQKAADEEPKSSKDFQQAAASPKAADKEP 171
+ EE K +++ K AE E K + + ++ + K ADE K +++ ++ A K A +
Sbjct: 1452 KAEEAKKAEEAKKKAE--EAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAK 1509
Query: 172 KTSKDFQQITEMQNEVKSNIHGEKKEDGKSPDALTAQKSDETTFPKDAVSMNQTDKTNEV 231
K + + ++ E + ++ E K+ ++ A +K+DE K A + + ++ +
Sbjct: 1510 KKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADEL---KKAEELKKAEEKKKA 1566
Query: 232 AKAKKIDQMTQKGFTMPENVTEKEEKK 258
+AKK ++ E + EE +
Sbjct: 1567 EEAKKAEEDKNMALRKAEEAKKAEEAR 1593
Score = 29.7 bits (66), Expect = 2.2
Identities = 35/156 (22%), Positives = 69/156 (44%), Gaps = 12/156 (7%)
Query: 107 TQPQPRKEEPKTTQKSPKAAEHKEPKSSKDFQQVSASQKAADEEPKSSKDFQQAAASPKA 166
+ + E K + KA K K +++ ++ ++K A+E+ K + + ++AAA+ K
Sbjct: 1362 AEEKAEAAEKKKEEAKKKADAAK--KKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKK 1419
Query: 167 ADKEPKTSKDFQQITEMQNEVKSNIHGEKKEDGKSPDALTAQKSDETTFPKDAVSMNQTD 226
AD+ K +++ ++ +E K KK D A A+K++E K A + D
Sbjct: 1420 ADEAKKKAEEKKK----ADEAKKKAEEAKKADEAKKKAEEAKKAEEA--KKKAEEAKKAD 1473
Query: 227 ----KTNEVAKAKKIDQMTQKGFTMPENVTEKEEKK 258
K E KA + + ++ + + E K
Sbjct: 1474 EAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAK 1509
Score = 29.7 bits (66), Expect = 2.5
Identities = 32/156 (20%), Positives = 69/156 (44%), Gaps = 2/156 (1%)
Query: 103 KETITQPQPRKEEPKTTQKSPKAAEHKEPKSSKDFQQVSASQKAADEEPKSSKDFQQAAA 162
K+ + EE K ++ KA E + K++++ ++ +K A+E K+ +D ++AA
Sbjct: 1633 KKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAE 1692
Query: 163 SPKAADKEPKTSKDFQQITEMQNEVKSNIHGEKKEDGKSPDALTAQKSDETTFPKDAVSM 222
+ K +E K +++ ++ E K +K E+ A A+K E K +
Sbjct: 1693 ALKKEAEEAKKAEELKKKEA--EEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAK 1750
Query: 223 NQTDKTNEVAKAKKIDQMTQKGFTMPENVTEKEEKK 258
++ ++A KK ++ + + +EE
Sbjct: 1751 KDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELD 1786
Score = 28.6 bits (63), Expect = 5.9
Identities = 37/161 (22%), Positives = 70/161 (43%), Gaps = 10/161 (6%)
Query: 103 KETITQPQPRKEEPKTTQKSPKA-AEHKEPKSSKDFQQVSASQKAADEEPKSSKDFQQAA 161
K+ + + EE K ++ KA AE ++ ++ A++K +E K + ++ A
Sbjct: 1328 KKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKA 1387
Query: 162 ASPKAADKEPKTSKDFQQITEMQNEVKSNIHGEKKEDGKSPDALTAQKSDETTFPKDAVS 221
K AD+ K +++ ++ + E+K +KK D A +K+DE K A
Sbjct: 1388 EEKKKADEAKKKAEEDKKKAD---ELKKAAAAKKKADEAKKKAEEKKKADEAK--KKAEE 1442
Query: 222 MNQTD----KTNEVAKAKKIDQMTQKGFTMPENVTEKEEKK 258
+ D K E KA++ + ++ E + EE K
Sbjct: 1443 AKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAK 1483
Score = 28.2 bits (62), Expect = 7.2
Identities = 28/137 (20%), Positives = 65/137 (47%), Gaps = 11/137 (8%)
Query: 112 RKEEPKTTQKSPKAAEHKE-----PKSSKDFQQVSASQKAADEEPKSSKDFQQAAASPKA 166
+ EE K ++ K AE + K +++ ++ ++K A+E K+ + ++A + K
Sbjct: 1439 KAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKK 1498
Query: 167 ADKEPKTSKDFQQITEMQNEVKSNIHGEKKEDGKSPDALTAQKSDETTFPKDAVSMNQTD 226
AD+ K ++ ++ E + E K+ ++ A A+K+DE ++ ++
Sbjct: 1499 ADEAKKAAEAKKKADEAKKA------EEAKKADEAKKAEEAKKADEAKKAEEKKKADELK 1552
Query: 227 KTNEVAKAKKIDQMTQK 243
K E+ KA++ + +
Sbjct: 1553 KAEELKKAEEKKKAEEA 1569
>gnl|CDD|212759 cd11825, SH3_PLCgamma, Src homology 3 domain of Phospholipase C
(PLC) gamma. PLC catalyzes the hydrolysis of
phosphatidylinositol (4,5)-bisphosphate [PtdIns(4,5)P2]
to produce Ins(1,4,5)P3 and diacylglycerol (DAG) in
response to various receptors. Ins(1,4,5)P3 initiates
the calcium signaling cascade while DAG functions as an
activator of PKC. PLCgamma catalyzes this reaction in
tyrosine kinase-dependent signaling pathways. It is
activated and recruited to its substrate at the
membrane. Vertebrates contain two forms of PLCgamma,
PLCgamma1, which is widely expressed, and PLCgamma2,
which is primarily found in haematopoietic cells.
PLCgamma contains a Pleckstrin homology (PH) domain
followed by an elongation factor (EF) domain, two
catalytic regions of PLC domains that flank two tandem
SH2 domains, followed by a SH3 domain and C2 domain. The
SH3 domain of PLCgamma1 directly interacts with
dynamin-1 and can serve as a guanine nucleotide exchange
factor (GEF). It also interacts with Cbl, inhibiting its
phosphorylation and activity. SH3 domains are protein
interaction domains that bind to proline-rich ligands
with moderate affinity and selectivity, preferentially
to PxxP motifs. They play versatile and diverse roles in
the cell including the regulation of enzymes, changing
the subcellular localization of signaling pathway
components, and mediating the formation of multiprotein
complex assemblies.
Length = 54
Score = 28.1 bits (63), Expect = 0.75
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 206 TAQKSDETTFPKDAVSMN 223
AQ+ DE +F K A+ N
Sbjct: 9 RAQRPDELSFCKHAIITN 26
>gnl|CDD|184006 PRK13367, PRK13367, protocatechuate 4,5-dioxygenase; Provisional.
Length = 420
Score = 30.5 bits (69), Expect = 1.0
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
Query: 4 TPQIG-----NKSTEN----LFEDFHPMSEWLDEPENNILLV 36
TP IG NK + +FE F P+ WL+E + ++LL
Sbjct: 13 TPTIGFAVDHNKQQDPAWAPIFESFAPLRRWLEEKKPDVLLY 54
>gnl|CDD|107251 cd01538, PBP1_ABC_xylose_binding, Periplasmic xylose-binding
component of the ABC-type transport systems that belong
to a family of pentose/hexose sugar-binding proteins of
the type I periplasmic binding protein (PBP1)
superfamily. Periplasmic xylose-binding component of
the ABC-type transport systems that belong to a family
of pentose/hexose sugar-binding proteins of the type I
periplasmic binding protein (PBP1) superfamily, which
consists of two alpha/beta globular domains connected by
a three-stranded hinge. This Venus flytrap-like domain
undergoes a transition from an open to a closed
conformational state upon ligand binding. Moreover, the
periplasmic xylose-binding protein is homologous to the
ligand-binding domain of eukaryotic receptors such as
glutamate receptor (GluR) and DNA-binding
transcriptional repressors such as LacI and GalR.
Length = 288
Score = 30.3 bits (69), Expect = 1.1
Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 10/75 (13%)
Query: 244 GFTMPENVTEKEEK--KSITAAVMK---DVKGIATDQNEDKQL-----LINIGVAALVIV 293
G ++P E+ + + AA+ + +V + + KQ+ +I GV LVI
Sbjct: 3 GLSLPTKTEERWIRDRPNFEAALKELGAEVIVQNANGDPAKQISQIENMIAKGVDVLVIA 62
Query: 294 ALGAYVSYSIGSKSK 308
+ S K+
Sbjct: 63 PVDGEALASAVEKAA 77
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 30.7 bits (69), Expect = 1.1
Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 7/122 (5%)
Query: 113 KEEPKTTQKSPKAAEHKEPKSSKDFQQVSASQKAADEEPKSSKDFQQAA--ASPKAADKE 170
+E+ K Q+ + + K+ + K Q+ +Q AD++ + QQ A A
Sbjct: 209 QEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKPADTSS 268
Query: 171 PKTSKDFQ-----QITEMQNEVKSNIHGEKKEDGKSPDALTAQKSDETTFPKDAVSMNQT 225
PK K +I + Q E+K N K L + +D Q
Sbjct: 269 PKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQK 328
Query: 226 DK 227
+
Sbjct: 329 KR 330
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 30.6 bits (69), Expect = 1.2
Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 12/96 (12%)
Query: 114 EEPKTTQKSPKAAEHKEPKSSKDFQQVSASQKAADEEPKSSKDFQQAAASPKAADKEPKT 173
E + + + E K+ K K ++ KAA +E K+ QQA+ K K
Sbjct: 6 SEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKK 65
Query: 174 SKDFQQITEMQNEVKSNIHGEKKEDGKSPDALTAQK 209
S+ K ++ E ED PD QK
Sbjct: 66 SR------------KRDVEDENPEDFIDPDTPFGQK 89
>gnl|CDD|217612 pfam03553, Na_H_antiporter, Na+/H+ antiporter family. This family
includes integral membrane proteins, some of which are
NA+/H+ antiporters.
Length = 302
Score = 30.0 bits (68), Expect = 1.6
Identities = 7/44 (15%), Positives = 19/44 (43%)
Query: 262 AAVMKDVKGIATDQNEDKQLLINIGVAALVIVALGAYVSYSIGS 305
V++ G+ + + + + G+ L+ L V++ G+
Sbjct: 174 GGVLEATGGLEVLLSSLTKGIKSKGLLPLITFLLALLVAFFTGT 217
>gnl|CDD|227889 COG5602, SIN3, Histone deacetylase complex, SIN3 component
[Chromatin structure and dynamics].
Length = 1163
Score = 30.3 bits (68), Expect = 1.6
Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 5/116 (4%)
Query: 79 IPSNCKIDKIHAKWNNAILTVTMPKETITQPQPRKEEPKTTQKSPKAAEHKEPKSSKDFQ 138
+PS KI+ + N + L VT P+ ++ P + + H S +
Sbjct: 191 LPSGYKIEGSLPQPNGSRLHVTTPQGPLSSPPVQSSYYVAPCNHDQRTSHPTLPSDSQPE 250
Query: 139 QVSASQKAADEEPKSSKDFQQAAA---SPKAA-DKEPKTSKDFQQITEM-QNEVKS 189
+ S +D K DF QA K P+ DF Q + +S
Sbjct: 251 PSAPSHMPSDARGKHQVDFNQAIIFVNKVKVRFQNNPEMYYDFLDSLRTYQMKQRS 306
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 30.1 bits (68), Expect = 1.8
Identities = 12/79 (15%), Positives = 30/79 (37%), Gaps = 4/79 (5%)
Query: 129 KEPKSSKDFQQVSASQKAADEEPKSSK----DFQQAAASPKAADKEPKTSKDFQQITEMQ 184
+ ++ Q+ QK ++ K SK D A + ++E + ++ ++ + +
Sbjct: 4 ENGENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKK 63
Query: 185 NEVKSNIHGEKKEDGKSPD 203
+ K GE +
Sbjct: 64 KKKKKKNLGEAYDLAYDLP 82
>gnl|CDD|233408 TIGR01427, PTS_IIC_fructo, PTS system, fructose subfamily, IIC
component. This model represents the IIC component, or
IIC region of a IIABC or IIBC polypeptide of a
phosphotransferase system for carbohydrate transport.
Members of this family belong to the fructose-specific
subfamily of the broader family (pfam02378) of PTS IIC
proteins. Members should be found as part of the same
chain or in the same operon as fructose family IIA
(TIGR00848) and IIB (TIGR00829) protein regions. A
number of bacterial species have members in two
different branches of this subfamily, suggesting some
diversity in substrate specificity of its members.
Length = 346
Score = 29.7 bits (67), Expect = 1.8
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 274 DQNEDKQLLINIGVA---ALVIVALGAYVSYSIGSK 306
+ N+ L+ IG AL++ L Y++YSI +
Sbjct: 54 NFNDLANWLMQIGGGVAFALMVPILAGYIAYSIADR 89
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 30.0 bits (68), Expect = 1.8
Identities = 15/115 (13%), Positives = 34/115 (29%), Gaps = 10/115 (8%)
Query: 95 AILTVTMPKETITQPQPRKEEPKTT----QKSPKAAEHKEPKSSKDFQQVSASQKAADEE 150
+ + T+ PQ T K +S + A KA
Sbjct: 46 LVDYLEEEDPTLRDPQISVVSSVTKLSKGPKDEPKQVKIPRQSGLSEEVAEAEAKATSVA 105
Query: 151 PKSSKDF------QQAAASPKAADKEPKTSKDFQQITEMQNEVKSNIHGEKKEDG 199
+++ + + KE + Q++ + N++ +I + +D
Sbjct: 106 AEATTPKSIQELVEALEELLEELLKETASDPVVQELVSIFNDLIDSIKEDNLKDD 160
>gnl|CDD|113290 pfam04514, BTV_NS2, Bluetongue virus non-structural protein NS2.
This family includes NS2 proteins from other members of
the Orbivirus genus. NS2 is a non-specific
single-stranded RNA-binding protein that forms large
homomultimers and accumulates in viral inclusion bodies
of infected cells. Three RNA binding regions have been
identified in Bluetongue virus serotype 17 at residues
2-11, 153-166 and 274-286. NS2 multimers also possess
nucleotidyl phosphatase activity. The precise function
of NS2 is not known, but it may be involved in the
transport and condensation of viral mRNAs.
Length = 363
Score = 29.8 bits (67), Expect = 1.9
Identities = 20/128 (15%), Positives = 44/128 (34%), Gaps = 7/128 (5%)
Query: 113 KEEPKTTQKSPKAAEHKEPKSSKDFQQVSASQKAADEEPKSSKDFQQAAASPKAADKEPK 172
KE+ + K E D + ++A D P++SK Q+ + +
Sbjct: 167 KEKEEQPMKPAFKPERWMGGPDSDEDENPLDEEAPDMTPETSKQDQKEERRAAVERRLAE 226
Query: 173 TSKDFQ-----QITEMQNEVKSNIHGEKKEDGKSPDALTAQKSDETTFPKDAVSMNQTDK 227
+ + +++ E + + D D D T P+ ++ ++
Sbjct: 227 LVEMINWNLEERRRDLRKEQEL--EENVERDSDDEDEHGEDSEDGETKPESYITSEYIER 284
Query: 228 TNEVAKAK 235
+E+ K K
Sbjct: 285 ISEIRKMK 292
>gnl|CDD|224882 COG1971, COG1971, Predicted membrane protein [Function unknown].
Length = 190
Score = 28.7 bits (65), Expect = 2.5
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 285 IGVAALVIVALGAYVSYSIGS 305
IG+ L++ ALGA + +G
Sbjct: 142 IGLITLILSALGAIIGRKLGK 162
>gnl|CDD|235638 PRK05896, PRK05896, DNA polymerase III subunits gamma and tau;
Validated.
Length = 605
Score = 29.4 bits (66), Expect = 2.6
Identities = 20/83 (24%), Positives = 33/83 (39%)
Query: 185 NEVKSNIHGEKKEDGKSPDALTAQKSDETTFPKDAVSMNQTDKTNEVAKAKKIDQMTQKG 244
+++ +I EKK S T + + K++V + KT KKI+Q ++
Sbjct: 371 KKIEISIKPEKKTINNSQIITTKKINIVEESNKNSVHFDTLYKTKIFYHKKKINQNNKEQ 430
Query: 245 FTMPENVTEKEEKKSITAAVMKD 267
E + EKE K D
Sbjct: 431 DIKKEELLEKEFVKKSEKIPKND 453
>gnl|CDD|221106 pfam11398, DUF2813, Protein of unknown function (DUF2813). This
entry contains YjbD from Escherichia coli, which is
annotated as a nucleotide triphosphate hydrolase.
Length = 373
Score = 29.1 bits (66), Expect = 2.6
Identities = 7/50 (14%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 217 KDAVSMNQTDKTNEVAK----AKKIDQMTQKGFTMPENVTEKEEKKSITA 262
+DA + + +++D ++ P++++E E + + A
Sbjct: 160 RDARRLREGTLDATNGSDERLERRLDNTCRRLLAQPQHLSEGELRSGLQA 209
>gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated.
Length = 619
Score = 29.4 bits (66), Expect = 2.9
Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 11/130 (8%)
Query: 114 EEPKTTQKSPKAAEHKEPKSSKDFQQVSASQKAADEEPKSSKDFQQAAASPKAADKEPKT 173
E+P+ ++KS + S K + +Q + ++ + K P ++K+P +
Sbjct: 137 EQPRNSEKSTNDSNKNSDSSIK---NDTDTQSSKQDKADNQKAPSSNNTKPSTSNKQPNS 193
Query: 174 SKDFQQI-------TEMQNEVKSNIHGEKKEDGKSPDALTAQKS-DETTFPKDAVSMNQT 225
K Q ++ KS+ + + D++ Q S D KD S ++
Sbjct: 194 PKPTQPNQSNSQPASDDTANQKSSSKDNQSMSDSALDSILDQYSEDAKKTQKDYASQSKK 253
Query: 226 DKTNEVAKAK 235
DKT
Sbjct: 254 DKTETSNTKN 263
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 29.2 bits (66), Expect = 3.4
Identities = 20/159 (12%), Positives = 50/159 (31%), Gaps = 6/159 (3%)
Query: 84 KIDKIHAKWNNAILTVTMPKETITQPQPRKEEPKTTQKSPKAAEHKEPKSSKDFQQVSAS 143
K + + ++ ++ + K T+ + KAA K P K ++ +S
Sbjct: 44 SKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSS 103
Query: 144 QKAADEEPKSSKDFQQAAASPKAADKEPKTSKDFQQIT------EMQNEVKSNIHGEKKE 197
+KA + D ++ D + ++ + + + +
Sbjct: 104 KKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDD 163
Query: 198 DGKSPDALTAQKSDETTFPKDAVSMNQTDKTNEVAKAKK 236
D D + + D + D + + +A+K
Sbjct: 164 DVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQARK 202
>gnl|CDD|107344 cd06349, PBP1_ABC_ligand_binding_like_14, Type I periplasmic
ligand-binding domain of uncharacterized ABC (Atpase
Binding Cassette)-type active transport systems. This
subgroup includes the type I periplasmic ligand-binding
domain of uncharacterized ABC (Atpase Binding
Cassette)-type active transport systems that are
predicted to be involved in the uptake of amino acids,
peptides, or inorganic ions. This subgroup has high
sequence similarity to members of the family of
hydrophobic amino acid transporters (HAAT), such as
leucine/isoleucine/valine binding protein (LIVBP);
however its ligand specificity has not been determined
experimentally.
Length = 340
Score = 28.1 bits (63), Expect = 5.4
Identities = 15/55 (27%), Positives = 22/55 (40%)
Query: 186 EVKSNIHGEKKEDGKSPDALTAQKSDETTFPKDAVSMNQTDKTNEVAKAKKIDQM 240
EV+S + + + G PDA AQ D AV TD+ K + +
Sbjct: 255 EVQSFVSAYEAKYGAQPDAFAAQAYDAVGILAAAVRRAGTDRRAARDGFAKAEDV 309
>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase
component of pyruvate dehydrogenase complex.
Length = 539
Score = 28.3 bits (63), Expect = 6.1
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 102 PKETITQPQPRKEEPKTTQKSPKAAEHKEPKSSKDFQQVSASQKA 146
PK + P P++EE + SP+ K ++ AS A
Sbjct: 211 PKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSGDRIFASPLA 255
>gnl|CDD|221395 pfam12048, DUF3530, Protein of unknown function (DUF3530). This
family of proteins is functionally uncharacterized. This
protein is found in bacteria. Proteins in this family
are typically between 272 to 336 amino acids in length.
These proteins are distantly related to alpa/beta
hydrolases so they may act as enzymes.
Length = 294
Score = 28.1 bits (63), Expect = 6.2
Identities = 13/78 (16%), Positives = 23/78 (29%), Gaps = 17/78 (21%)
Query: 89 HAKWNNAI--------------LTVTMPKETITQPQPRKEEPKTTQKSPK---AAEHKEP 131
A W I L++T P P R E + K+ ++ E
Sbjct: 92 TADWPGLIAPLRRELPDAGWATLSLTPPDPPSAAPPNRPTEAEEVTKAGAKQLSSPSNEE 151
Query: 132 KSSKDFQQVSASQKAADE 149
+++ A +A
Sbjct: 152 LLDAQEERLFARLEALIA 169
>gnl|CDD|221611 pfam12508, DUF3714, Protein of unknown function (DUF3714). This
domain family is found in bacteria, and is approximately
200 amino acids in length.
Length = 200
Score = 27.6 bits (62), Expect = 6.4
Identities = 8/53 (15%), Positives = 15/53 (28%)
Query: 220 VSMNQTDKTNEVAKAKKIDQMTQKGFTMPENVTEKEEKKSITAAVMKDVKGIA 272
VS ++ + GF E+ +I A V + +
Sbjct: 15 VSSLPQPMSDSEFAVVYKSKERNGGFNTVVGSEPSTERNTIKACVDETQTVVD 67
>gnl|CDD|173181 PRK14718, PRK14718, ribonuclease III; Provisional.
Length = 467
Score = 28.2 bits (62), Expect = 6.7
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 102 PKETITQPQPRKEEPKTTQKSPKAAEHKEPKSSKDFQQVSASQKAADEEPKSSKDFQQAA 161
P E + E + + SP+ K P S + Q +S+ A++ + D AA
Sbjct: 371 PAEKPAAATDKPPEKASDKPSPEKTSEKTPDKSHEKQLDKSSEPVAEKALDKTADKPDAA 430
Query: 162 AS--PKAADKEPK 172
A + AD+ P+
Sbjct: 431 ARLPAETADRPPR 443
>gnl|CDD|237082 PRK12373, PRK12373, NADH dehydrogenase subunit E; Provisional.
Length = 400
Score = 28.2 bits (63), Expect = 6.8
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Query: 102 PKETITQPQPRKEEPKTTQKSPKAAEHKEPKSSKDFQQVSASQKAADEEPKSSKDFQQAA 161
P E +P+ E K+P A K++K + S AA E AA
Sbjct: 243 PSEA-ARPKSADAETNAALKTPATAPKAAAKNAKAPEAQPVSGTAAAEPAPKEAAKAAAA 301
Query: 162 ASPKAADKEPKTSK 175
A+ A + +P+
Sbjct: 302 AAKPALEDKPRPLG 315
>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau;
Validated.
Length = 709
Score = 28.1 bits (62), Expect = 6.8
Identities = 33/161 (20%), Positives = 56/161 (34%), Gaps = 9/161 (5%)
Query: 98 TVTMPKETIT-QPQPRKEEPKTTQKSPKAAEHKEPKSSKDFQQVSASQKAADEEPKSSKD 156
T KET +PQPR E A+ P K VS +Q+ D P
Sbjct: 382 AQTAEKETAAKKPQPRPEAETAQTPVQTASAAAMPSEGKTAGPVS-NQENNDVPPWEDAP 440
Query: 157 FQQAAASPKAADKEPKTSKDFQQITEMQNEVKSNIHGEKKEDGKSPDALTAQKSDETTFP 216
+ A+ A ++K Q +E + ++ + K D ++ L+ S+ P
Sbjct: 441 DEAQTAAGTA----QTSAKSIQTASEAETPPENQVSKNKAADNETDAPLSEVPSEN---P 493
Query: 217 KDAVSMNQTDKTNEVAKAKKIDQMTQKGFTMPENVTEKEEK 257
A ++ +T A + GF + E +
Sbjct: 494 IQATPNDEAVETETFAHEAPAEPFYGYGFPDNDCPPEDGAE 534
>gnl|CDD|219564 pfam07771, TSGP1, Tick salivary peptide group 1. This contains a
group of peptides derived from a salivary gland cDNA
library of the tick Ixodes scapularis. Also present are
peptides from a related tick species, Ixodes ricinus.
They are characterized by a putative signal peptide
indicative of secretion and conserved cysteine residues.
Length = 120
Score = 26.8 bits (59), Expect = 8.0
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 100 TMPKETITQPQPRKEEPKTTQKSPKAAEHKEPKSSKD 136
P P E+PK +K K + + S KD
Sbjct: 84 GEPSHPDDHPPEPTEKPKKKKKKSKKTKKPKKSSKKD 120
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 28.0 bits (62), Expect = 8.1
Identities = 13/58 (22%), Positives = 25/58 (43%)
Query: 112 RKEEPKTTQKSPKAAEHKEPKSSKDFQQVSASQKAADEEPKSSKDFQQAAASPKAADK 169
+ KT ++S K A K + + ++KAA ++ + K + + KA K
Sbjct: 971 AEAVRKTVRRSVKKAAATRAAMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAK 1028
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 27.9 bits (62), Expect = 8.2
Identities = 17/129 (13%), Positives = 42/129 (32%)
Query: 108 QPQPRKEEPKTTQKSPKAAEHKEPKSSKDFQQVSASQKAADEEPKSSKDFQQAAASPKAA 167
+P+ +E + ++ K E K + ++ + A PK + +
Sbjct: 132 KPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPP 191
Query: 168 DKEPKTSKDFQQITEMQNEVKSNIHGEKKEDGKSPDALTAQKSDETTFPKDAVSMNQTDK 227
++E + + + E N EK+ED T +E + + ++
Sbjct: 192 EEEKQRQAAREAVKGKPEEPDVNEEREKEEDDGKDRETTTSPMEEDESRQSSEISRRSSS 251
Query: 228 TNEVAKAKK 236
+ +
Sbjct: 252 SLKKPDPSP 260
>gnl|CDD|182849 PRK10933, PRK10933, trehalose-6-phosphate hydrolase; Provisional.
Length = 551
Score = 27.8 bits (62), Expect = 8.4
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 173 TSKDFQQITEMQNEVKSNIHGEKKEDGKSPD---ALTAQKS 210
T+ F +IT+ ++ N+ E + DG+ D A+ A KS
Sbjct: 369 TNPHFTRITDYRDVESLNMFAELRNDGRDADELLAILASKS 409
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 27.1 bits (60), Expect = 9.8
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 148 DEEPKSSKDFQQAAASPKAADKEPKTSKDFQQIT-EMQNEVKSNIHGEKKEDGKSP 202
E+ K++KD K ++ K I +M VK EKKE+ K P
Sbjct: 18 SEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKP 73
>gnl|CDD|191187 pfam05087, Rota_VP2, Rotavirus VP2 protein. Rotavirus particles
consist of three concentric proteinaceous capsid layers.
The innermost capsid (core) is made of VP2. The genomic
RNA and the two minor proteins VP1 and VP3 are
encapsidated within this layer. The N-terminus of
rotavirus VP2 is necessary for the encapsidation of VP1
and VP3.
Length = 887
Score = 27.6 bits (61), Expect = 10.0
Identities = 19/122 (15%), Positives = 48/122 (39%), Gaps = 2/122 (1%)
Query: 112 RKEEPKTTQKSPKAAEHKEPKSSKDFQQVSASQKAADEEPKSSKDFQQAAASPKAADKEP 171
+ E + E + K+ + +K D++ + D + +++ +
Sbjct: 5 NRREANINNNDRMQEKDDEKQDQKNRME--LKEKVLDKKEEVVTDNVDSPVKEQSSQENL 62
Query: 172 KTSKDFQQITEMQNEVKSNIHGEKKEDGKSPDALTAQKSDETTFPKDAVSMNQTDKTNEV 231
K + + ++ T+ +++ + K+E K QK+ + PK+++ D E
Sbjct: 63 KIADEVKKSTKEESKQLLEVLKTKEEHQKEIQYEILQKTIPSFEPKESILKKLEDIKPEQ 122
Query: 232 AK 233
AK
Sbjct: 123 AK 124
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.307 0.123 0.338
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,530,988
Number of extensions: 1291595
Number of successful extensions: 1449
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1331
Number of HSP's successfully gapped: 164
Length of query: 309
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 212
Effective length of database: 6,635,264
Effective search space: 1406675968
Effective search space used: 1406675968
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 59 (26.4 bits)