RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 035730
(309 letters)
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 62.7 bits (153), Expect = 2e-12
Identities = 26/106 (24%), Positives = 53/106 (50%), Gaps = 12/106 (11%)
Query: 19 FHPMSEWLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQL----GDNKWSR-- 72
+ +W + PE ++ LP KE++++ V ++ V+GER ++KW R
Sbjct: 42 ANARMDWKETPEAHVFKADLPGVKKEEVKVE-VEDGNVLVVSGERTKEKEDKNDKWHRVE 100
Query: 73 -----CNQAFPIPSNCKIDKIHAKWNNAILTVTMPKETITQPQPRK 113
+ F + + K++++ A N +LTVT+PK + +P+ +
Sbjct: 101 RSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKA 146
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 52.9 bits (128), Expect = 2e-09
Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 13/98 (13%)
Query: 18 DFHPMSEWLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQL----GDNKWSR- 72
+ P + +E + +L LP QI + I+ + GER+ ++SR
Sbjct: 2 QWVPRVDIKEEVNHFVLYADLPGIDPSQIEVQM--DKGILSIRGERKSESSTETERFSRI 59
Query: 73 ------CNQAFPIPSNCKIDKIHAKWNNAILTVTMPKE 104
++ F +P + D I A N +L + +PK
Sbjct: 60 ERRYGSFHRRFALPDSADADGITAAGRNGVLEIRIPKR 97
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 53.4 bits (129), Expect = 2e-09
Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 13/114 (11%)
Query: 9 NKSTENLFEDFHPMS----EWLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQ 64
K +E L F+ + + +E +++ L F KE+I+ V + + ER+
Sbjct: 9 QKRSEELSRGFYELVYPPVDMYEEGGYLVVVADLAGFNKEKIKAR-VSGQNELIIEAERE 67
Query: 65 LGDNKWSRCNQ-------AFPIPSNCKID-KIHAKWNNAILTVTMPKETITQPQ 110
+ + Q +P N D +I K+ N +LT+ +P + +
Sbjct: 68 ITEPGVKYLTQRPKYVRKVIRLPYNVAKDAEISGKYENGVLTIRIPIAGTSVFK 121
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 48.2 bits (115), Expect = 3e-07
Identities = 15/101 (14%), Positives = 34/101 (33%), Gaps = 14/101 (13%)
Query: 21 PMSEWLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQL----GDNKWSRCNQ- 75
++ ++ ++ LP KE I + + + +R +
Sbjct: 57 MPISIIEGDQHIKVIAWLPGVNKEDIILNA--VGDTLEIRAKRSPLMITESERIIYSEIP 114
Query: 76 -------AFPIPSNCKIDKIHAKWNNAILTVTMPKETITQP 109
+P+ K + AK+ N +L+V +PK +
Sbjct: 115 EEEEIYRTIKLPATVKEENASAKFENGVLSVILPKAESSIK 155
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 48.0 bits (114), Expect = 5e-07
Identities = 20/117 (17%), Positives = 47/117 (40%), Gaps = 11/117 (9%)
Query: 21 PMSEWLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLGDNKWSRCNQAF--- 77
+SE E + + + + F+ E++++ ++ V G+ + ++ ++ F
Sbjct: 64 GLSEMRLEKDRFSVNLDVKHFSPEELKVK--VLGDVIEVHGKHEERQDEHGFISREFHRK 121
Query: 78 -PIPSNCKIDKIHAK-WNNAILTVTMPKETITQPQPRKEEPKTTQKSPKAAEHKEPK 132
IP++ I + ++ +LTV P++ E + K A PK
Sbjct: 122 YRIPADVDPLTITSSLSSDGVLTVNGPRK----QVSGPERTIPITREEKPAVTAAPK 174
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 44.8 bits (106), Expect = 2e-06
Identities = 14/101 (13%), Positives = 34/101 (33%), Gaps = 7/101 (6%)
Query: 22 MSEWLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLGDNKWSRCNQAF---- 77
M++ +P +L+ + F+ E+I + V V V + ++ + F
Sbjct: 3 MAQVPTDPGYFSVLLDVKHFSPEEISVKVV--GDHVEVHARHEERPDEHGFIAREFHRRY 60
Query: 78 PIPSNCKIDKIHAK-WNNAILTVTMPKETITQPQPRKEEPK 117
+P + + +L++ + P K
Sbjct: 61 RLPPGVDPAAVTSALSPEGVLSIQATPASAQASLPSPPAAK 101
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 44.9 bits (106), Expect = 2e-06
Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 3/97 (3%)
Query: 21 PMSEWLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRV-TGERQLGDNKWSRC-NQAFP 78
+SE + + ++ + + F+ E + + + ERQ SR ++ +
Sbjct: 3 GISEVRSDRDKFVIFLDVKHFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRYR 62
Query: 79 IPSNCKIDKIHAK-WNNAILTVTMPKETITQPQPRKE 114
+PSN + + +LT + PK E
Sbjct: 63 LPSNVDQSALSCSLSADGMLTFSGPKIPSGVDAGHSE 99
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 39.7 bits (93), Expect = 7e-05
Identities = 13/82 (15%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 34 LLVHLPDFTKEQIRITCVRSSRIVRVTGERQLGDNKWSRCNQAF----PIPSNCKIDKIH 89
+ + + F+ E++++ + ++ V G+ + ++ ++ F IP++ I
Sbjct: 10 VNLDVKHFSPEELKVKVL--GDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTIT 67
Query: 90 AK-WNNAILTVTMPKETITQPQ 110
+ ++ +LTV P++ ++ P+
Sbjct: 68 SSMSSDGVLTVNGPRKQVSGPE 89
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 0.007
Identities = 45/369 (12%), Positives = 99/369 (26%), Gaps = 120/369 (32%)
Query: 8 GNKSTENLFEDFH-PMSEWLDEP-----------------ENNILLVHLPDFTKEQI-RI 48
+ + E+ ++L P + + L F K + R+
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134
Query: 49 TCV----------RSSRIVRVTGERQLGDNKWSRCNQAFPIPSNCKIDKIHAKWNNAILT 98
R ++ V + G LG K C K+ K + I
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDG--VLGSGKTWVALDV------CLSYKVQCKMDFKIFW 186
Query: 99 VTM-----PKETITQPQP--RKEEPKTTQKSPKAAEHKEPKSSKDFQQVSASQKAADEEP 151
+ + P+ + Q + +P T S + + S +A
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTS---------RSDHSSNIKLRIHSIQAELRRL 237
Query: 152 KSSKDFQQA------AASPKAADK-EPK-----TSKDFQQITEMQNEVKSNIHGEKKEDG 199
SK ++ + KA + T++ Q + ++I +
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 200 KSPD---ALTAQ--KSDETTFPKDAVSMN------------------------QTDKTNE 230
+PD +L + P++ ++ N DK
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 231 VAKAKKIDQMT----QKGFTM----PENVTEKEEKKSITAAVMK---------DVKGIAT 273
+ ++ ++ + +K F P + I ++ DV +
Sbjct: 358 IIES-SLNVLEPAEYRKMFDRLSVFPPSA-------HIPTILLSLIWFDVIKSDVMVVV- 408
Query: 274 DQNEDKQLL 282
++ L+
Sbjct: 409 NKLHKYSLV 417
Score = 33.7 bits (76), Expect = 0.087
Identities = 47/376 (12%), Positives = 92/376 (24%), Gaps = 120/376 (31%)
Query: 18 DFHPMSEWLDEPENNILLVHLPDFTK------------------------------EQIR 47
DF E +IL V F
Sbjct: 8 DFE-TGE-HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 48 ----ITCVRSSRIVRVTGERQLGDN-KW------SRCNQAFP-IPSNCKIDKIHAKWNNA 95
+ +V+ E L N K+ + Q P + + I++ +N+
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ--PSMMTRMYIEQRDRLYND- 122
Query: 96 ILTVTMPKETITQPQP---RKEEPKTTQKSPKAAEHKEPKSSKDFQQVSASQKAADEEPK 152
K +++ QP ++ + + S K A + +
Sbjct: 123 --NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK---TWVALDVCLSYKVQ 177
Query: 153 SSKDFQ------QAAASPKAADKEPKT-----SKDFQQITEMQNEVKSNIHGEKKE---- 197
DF+ + SP+ + + ++ ++ + +K IH + E
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 198 --DGKSPDAL----------TAQKSDE------TTFPKDAVSMNQTDKTNEVAKAKKIDQ 239
+ L + TT + TD +
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT--RFK---QVTDFLSAATTTHISLD 292
Query: 240 MTQKGFTMPE------NVTEKEEKK-------------SITAAVMKDVKGIATDQN---- 276
T E + + SI A ++D G+AT N
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD--GLATWDNWKHV 350
Query: 277 --EDKQLLINIGVAAL 290
+ +I + L
Sbjct: 351 NCDKLTTIIESSLNVL 366
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 36.3 bits (83), Expect = 0.009
Identities = 12/91 (13%), Positives = 30/91 (32%), Gaps = 5/91 (5%)
Query: 18 DFHPMSEWLDEPENNILLVHLPDFTKEQIRITCVRSSRIV----RVTGERQLGDNKWSRC 73
++ + ++ L P F + +++ + V + + + R
Sbjct: 222 GLEIVTAEDGSKKIHLELKVDPHFAPKDVKVWAKGNKVYVHGVTGKEEKTENASHSEHRE 281
Query: 74 -NQAFPIPSNCKIDKIHAKWNNAILTVTMPK 103
+AF P K A+ + ++ V P
Sbjct: 282 FYKAFVTPEVVDASKTQAEIVDGLMVVEAPL 312
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.010
Identities = 35/166 (21%), Positives = 60/166 (36%), Gaps = 37/166 (22%)
Query: 4 TPQIGNKSTENLFEDFHPM----SEWLDEPENNILLV--HLPDFTKEQIRITCVRSSRIV 57
P I S EN PM + ++ ++ + HLP +Q+ I+ V ++ +
Sbjct: 320 PPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP--AGKQVEISLVNGAKNL 377
Query: 58 RVTGE-RQL-GDNKWSRCNQAFPIPSNCKIDKI-----HAKWNNAILTVTMP-------- 102
V+G + L G N R +A PS +I K++N L V P
Sbjct: 378 VVSGPPQSLYGLNLTLRKAKA---PSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVP 434
Query: 103 -KETITQPQPRKEEPKTTQKSPKAAEHKEP----KSSKDFQQVSAS 143
+ I + + S A + + P D + +S S
Sbjct: 435 ASDLINKDLVKNNV------SFNAKDIQIPVYDTFDGSDLRVLSGS 474
Score = 35.0 bits (80), Expect = 0.030
Identities = 45/281 (16%), Positives = 73/281 (25%), Gaps = 105/281 (37%)
Query: 11 STENLFEDFHPMSEWLDEPE----NNILL---VHLPDFTKEQI---RITCVRS------- 53
E +F + EWL+ P + LL + P Q+ +T
Sbjct: 204 DAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGEL 263
Query: 54 -SRIVRVTGERQ---------LGDNKW------------------SRCNQAFP------- 78
S + TG Q D+ W RC +A+P
Sbjct: 264 RSYLKGATGHSQGLVTAVAIAETDS-WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS 322
Query: 79 -----------IPS-------------NCKIDKI--HAKWNNAI----------LTVTMP 102
+PS ++K H + L V+ P
Sbjct: 323 ILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP 382
Query: 103 KET----ITQPQPRKEEPKTTQKSPKAAEHKEPKSSKDFQQVSA---SQKAADEEPKSSK 155
++ + K Q +E K K S F V++ S +K
Sbjct: 383 PQSLYGLNLTLRKAKAPSGLDQSRIPFSERK-LKFSNRFLPVASPFHSHLLVPASDLINK 441
Query: 156 DFQQAAASPKAAD-KEP----KTSKDFQQITEMQNEVKSNI 191
D + S A D + P D + + + I
Sbjct: 442 DLVKNNVSFNAKDIQIPVYDTFDGSDLR---VLSGSISERI 479
Score = 34.6 bits (79), Expect = 0.049
Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 42/118 (35%)
Query: 119 TQKSPKAAEHKEPKSSKDFQQV---SASQKAADEEPKSSKD----FQQAAASPKAADKEP 171
T A++ +E F ++ AAD+EP + + F +S EP
Sbjct: 24 TASFFIASQLQE-----QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSL----VEP 74
Query: 172 KTSKDFQQITE----------MQNEVKSNIHGEKKEDGKSPDALTAQ--KSDETTFPK 217
F Q+ ++ +IH AL A+ + ++TT K
Sbjct: 75 SKVGQFDQVLNLCLTEFENCYLEGN---DIH-----------ALAAKLLQENDTTLVK 118
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 32.2 bits (72), Expect = 0.27
Identities = 10/74 (13%), Positives = 20/74 (27%)
Query: 102 PKETITQPQPRKEEPKTTQKSPKAAEHKEPKSSKDFQQVSASQKAADEEPKSSKDFQQAA 161
+ + K E + + + A+ A EE S + +
Sbjct: 50 KQNEGEHARENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPS 109
Query: 162 ASPKAADKEPKTSK 175
A K + +K
Sbjct: 110 AEAKPKSDKETEAK 123
>2b5i_D Interleukin-2 receptor alpha chain; four-helix bundle, fibronectin
domain, cytokine-cytokine REC complex; HET: NAG; 2.30A
{Homo sapiens} SCOP: g.18.1.1 g.18.1.1 PDB: 3nfp_I
3iu3_I 1z92_B 2erj_A*
Length = 217
Score = 30.7 bits (68), Expect = 0.49
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 72 RCNQAFPIPSNCKIDKIHAKWNNAILTVTMPKETITQPQPRKEEPKTTQKSPKAAEHKEP 131
R P S CK+ +W L T E T P +E+P+ + + +E
Sbjct: 136 RALHRGPAESVCKMTHGKTRWTQPQLICT--GEMETSQFPGEEKPQASPEGRPESETSCL 193
Query: 132 KSSKDFQQ 139
++ DFQ
Sbjct: 194 VTTTDFQI 201
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 30.6 bits (68), Expect = 0.80
Identities = 12/80 (15%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
Query: 76 AFPIPSNCKIDKIHAKWNNAILTVTMPKETITQPQPRKEEPKTTQKSPKAAEHKEPKSSK 135
++P K K A+L+ T + + ++ K + K EH+E + +
Sbjct: 794 SYPRMYEEASGKEVEKVATAVLSTTARAKA---RAKKTKKEKGPNEEEKKKEHEEKEKER 850
Query: 136 DFQQVSASQKAADEEPKSSK 155
+ + + ++E
Sbjct: 851 ETNKKGIKETKENDEEFYKN 870
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 1.4
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 6/71 (8%)
Query: 106 ITQPQPRKEEPKTTQK----SPKAAEHKEPKSSKDFQQVSASQKAADEE--PKSSKDFQQ 159
I Q +EP++ +K K + + S Q+ K EE + S+ ++
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK 133
Query: 160 AAASPKAADKE 170
+ + ADK
Sbjct: 134 NKINNRIADKA 144
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.4
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 7/35 (20%)
Query: 178 QQITEMQNEVKSNIHGEKKEDGKSPDALTAQKSDE 212
Q + ++Q +K D +P AL + + E
Sbjct: 20 QALKKLQASLK------LYADDSAP-ALAIKATME 47
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.307 0.123 0.338
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,220,218
Number of extensions: 233527
Number of successful extensions: 340
Number of sequences better than 10.0: 1
Number of HSP's gapped: 333
Number of HSP's successfully gapped: 34
Length of query: 309
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 216
Effective length of database: 4,105,140
Effective search space: 886710240
Effective search space used: 886710240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 57 (25.9 bits)