RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 035730
         (309 letters)



>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 52.1 bits (124), Expect = 5e-09
 Identities = 23/106 (21%), Positives = 50/106 (47%), Gaps = 12/106 (11%)

Query: 19  FHPMSEWLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGER-----------QLGD 67
            +   +W + PE ++    LP   KE++++  V    ++ V+GER              +
Sbjct: 41  ANARMDWKETPEAHVFKADLPGVKKEEVKVE-VEDGNVLVVSGERTKEKEDKNDKWHRVE 99

Query: 68  NKWSRCNQAFPIPSNCKIDKIHAKWNNAILTVTMPKETITQPQPRK 113
               +  + F +  + K++++ A   N +LTVT+PK  + +P+ + 
Sbjct: 100 RSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKA 145


>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 43.9 bits (103), Expect = 2e-06
 Identities = 18/104 (17%), Positives = 41/104 (39%), Gaps = 11/104 (10%)

Query: 17  EDFHPMSEWLDEPENNILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLGD--------- 67
           + F P+   ++  ++  ++  LP   KE I +  V  +  +R      +           
Sbjct: 8   KGFMPI-SIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSE 66

Query: 68  -NKWSRCNQAFPIPSNCKIDKIHAKWNNAILTVTMPKETITQPQ 110
             +     +   +P+  K +   AK+ N +L+V +PK   +  +
Sbjct: 67  IPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPKAESSIKK 110


>d1ub2a1 a.93.1.3 (A:21-426) Catalase-peroxidase KatG {Synechococcus
           sp. pcc 7942 [TaxId: 1140]}
          Length = 406

 Score = 25.4 bits (55), Expect = 9.0
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query: 239 QMTQKGFTMPENVTEKEEKKSITAAVMKDVKGIATDQNE 277
           Q  +K   M  +   +EE + + AA+ +D++ + TD  +
Sbjct: 17  QHDRKTNPMGPDFNYQEEVQKLDAALKQDLQALMTDSQD 55


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.307    0.123    0.338 

Gapped
Lambda     K      H
   0.267   0.0601    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,007,168
Number of extensions: 43224
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 6
Length of query: 309
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 224
Effective length of database: 1,240,546
Effective search space: 277882304
Effective search space used: 277882304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 53 (24.5 bits)