BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035732
(559 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 68/144 (47%), Gaps = 13/144 (9%)
Query: 257 LEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGC--SKVESIAERLDNN 314
L EL I CP LT ELP L S + L +L + + S+ + N
Sbjct: 152 LRELSIRACPELT------ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL 205
Query: 315 TSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPE--GGLPCAKLTRLEIYD 372
+L+ + I R L L +H+L +L+E+ ++ C L ++P GG A L RL + D
Sbjct: 206 QNLKSLKI-RNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR--APLKRLILKD 262
Query: 373 CKRLEALPKGLHNLTSLQHLTIGG 396
C L LP +H LT L+ L + G
Sbjct: 263 CSNLLTLPLDIHRLTQLEKLDLRG 286
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 89/213 (41%), Gaps = 30/213 (14%)
Query: 163 LVSFPEVALP-SKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCRWLTFIAAVQLP 221
L FP+ A S L+ I G L LP+ + LE L + A++
Sbjct: 93 LPQFPDQAFRLSHLQHXTIDAAG-LXELPDT--XQQFAGLETLTLARNPLRALPASIASL 149
Query: 222 SSLKKLQIRRCDNIRTLTAEEGIQCSSGRRYTSSLLEELEI-WDCPSLTCIFSKNELPAT 280
+ L++L IR C + L +SG L+ L + W T I S LPA+
Sbjct: 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW-----TGIRS---LPAS 201
Query: 281 ------LESLEVGNLP-----------PSLKSLYVYGCSKVESIAERLDNNTSLEKISIK 323
L+SL++ N P P L+ L + GC+ + + L+++ +K
Sbjct: 202 IANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261
Query: 324 RCGTLKILPSGLHNLRQLQEISIQICENLVSFP 356
C L LP +H L QL+++ ++ C NL P
Sbjct: 262 DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 31/156 (19%)
Query: 95 LKRLTIDSCPKL----QSLVAEEEKDQQQQLCEL-SCRLEYLGLTSCHGLV--------- 140
L+ L+I +CP+L + L + + + Q L L S RLE+ G+ S +
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL 211
Query: 141 KLPQSSFS--------LSSLREIEIYNCSSLVSFPEV-ALPSKLKKIRISYCGALKSLPE 191
K+ S S L L E+++ C++L ++P + + LK++ + C L +LP
Sbjct: 212 KIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP- 270
Query: 192 AWMCDTN--SSLEILNIEHCRWLTFIAAV--QLPSS 223
D + + LE L++ C L+ + ++ QLP++
Sbjct: 271 ---LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 140/325 (43%), Gaps = 70/325 (21%)
Query: 121 LCELSCRLEYLGLTSCHGLVKLPQSSFSLSSLREIEIYNCSSLVSFPEV----------- 169
L EL LE L + SC+ L +LP+ SL SL ++ N +L P +
Sbjct: 86 LPELPPHLESL-VASCNSLTELPELPQSLKSLL-VDNNNLKALSDLPPLLEYLGVSNNQL 143
Query: 170 -ALP-----SKLKKIRISYCGALKSLPE-----AWMCDTNSSLEIL-NIEHCRWLTFIAA 217
LP S LK I + +LK LP+ ++ N+ LE L +++ +LT I A
Sbjct: 144 EKLPELQNSSFLKIIDVD-NNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYA 202
Query: 218 VQLPSSLKKLQIRRCDNIRTLTAEEGIQCSSGRRYTSSLLEEL-EIWDCPSLTCIFSKNE 276
+SLKKL ++ ++ A I LEEL E+ + P LT I++ N
Sbjct: 203 DN--NSLKKLPDLPL-SLESIVAGNNI------------LEELPELQNLPFLTTIYADNN 247
Query: 277 LPATLESLEVGNLPPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLH 336
L TL +LPPSL++L V + + + E L + + +S L LP L+
Sbjct: 248 LLKTL-----PDLPPSLEALNVRD-NYLTDLPE-LPQSLTFLDVSENIFSGLSELPPNLY 300
Query: 337 NLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLE--ALPKGLHNL-TSLQHLT 393
L +C+ LP + L L + + K +E ALP L L S HL
Sbjct: 301 YLNASSNEIRSLCD---------LPPS-LEELNVSNNKLIELPALPPRLERLIASFNHLA 350
Query: 394 IGGALPSLEEDGLPTNLQLLNIEGN 418
E LP NL+ L++E N
Sbjct: 351 --------EVPELPQNLKQLHVEYN 367
>pdb|1Y9M|A Chain A, Crystal Structure Of Exo-Inulinase From Aspergillus
Awamori In Spacegroup P212121
pdb|1Y9G|A Chain A, Crystal Structure Of Exo-Inulinase From Aspergillus
Awamori Complexed With Fructose
pdb|1Y4W|A Chain A, Crystal Structure Of Exo-Inulinase From Aspergillus
Awamori In Spacegroup P21
Length = 518
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 16/92 (17%)
Query: 57 AGPLKPRIPKLEELEIKNIKNETYIWKSHDE-----LLQDICSLKRLTIDSCPKLQSLVA 111
A P+ P P E E +N ++ W HDE ++ I L +L I + L+
Sbjct: 150 ANPVIPNPPSPYEAEYQNFRDPFVFW--HDESQKWVVVTSIAELHKLAIYTSDNLKDW-- 205
Query: 112 EEEKDQQQQLCELSCRLEYLGLTSCHGLVKLP 143
+ + E G+ C GLVKLP
Sbjct: 206 -------KLVSEFGPYNAQGGVWECPGLVKLP 230
>pdb|4GT6|A Chain A, Crystal Structure Of A Leucine Rich Cell Surface Protein
(Faepraa2165_01021) From Faecalibacterium Prausnitzii
A2-165 At 1.80 A Resolution
Length = 394
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 65/142 (45%), Gaps = 17/142 (11%)
Query: 126 CRLEYLGLTSCHGLVKLPQSSFSLSSLREIEIYNCSSL--VSFPEVALPSKLKKI---RI 180
C +Y+ LTS V++P + ++ + YNC+SL V+ + PS +KKI
Sbjct: 60 CNYKYV-LTS----VQIPDT---VTEIGSNAFYNCTSLKRVTIQD-NKPSCVKKIGRQAF 110
Query: 181 SYCGALKSLPEAWMCDTNSSLEILNIEHCRWLTFIAAVQLPSSLKKLQIRRCDNIRTLTA 240
+C L +P + D+ + ++ HC L + + +S+ C ++ T+T
Sbjct: 111 XFCSELTDIP---ILDSVTEIDSEAFHHCEELDTVTIPEGVTSVADGXFSYCYSLHTVTL 167
Query: 241 EEGIQCSSGRRYTSSLLEELEI 262
+ + R +T + L ++ I
Sbjct: 168 PDSVTAIEERAFTGTALTQIHI 189
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 75/185 (40%), Gaps = 28/185 (15%)
Query: 127 RLEYLGLTSCHGLVKLPQSSFSLSSLREIEIYNCSSLVSFPEVALP-SKLKKIRISYCGA 185
RLEY+ + GLV L + + +L++I N ++LV E+ L ++L IR
Sbjct: 143 RLEYISEAAFEGLVNLRYLNLGMCNLKDIP--NLTALVRLEELELSGNRLDLIRPGSFQG 200
Query: 186 LKSLPEAWMC------------DTNSSLEILNIEHCRWLTFIAAVQLPSSLKKLQIRRCD 233
L SL + W+ D SLE LN+ H ++ + P L +L+
Sbjct: 201 LTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTP--LHRLE----- 253
Query: 234 NIRTLTAEEGIQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSL 293
R C+ + S L+E PS T ++ PA L+ +G L S
Sbjct: 254 --RVHLNHNPWHCNCDVLWLSWWLKE----TVPSNTTCCARCHAPAGLKGRYIGELDQSH 307
Query: 294 KSLYV 298
+ Y
Sbjct: 308 FTCYA 312
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 15/95 (15%)
Query: 127 RLEYLGLTSCHGLVKLPQSSFSLSSLREIEIYNCSSLVSFPEVALP-SKLKKIRISYCGA 185
RLEY+ + GLV L + + +L++I N ++LV E+ L ++L IR
Sbjct: 143 RLEYISEAAFEGLVNLRYLNLGMCNLKDIP--NLTALVRLEELELSGNRLDLIRPGSFQG 200
Query: 186 LKSLPEAWMC------------DTNSSLEILNIEH 208
L SL + W+ D SLE LN+ H
Sbjct: 201 LTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSH 235
>pdb|1PA6|A Chain A, Crystal Structure Of The Oxytricha Nova Telomere
End-Binding Protein Complexed With Noncognate Ssdna
Ggggttttgagg
pdb|1PH3|A Chain A, Crystal Structure Of The Oxytricha Nova Telomere
End-Binding Protein Complexed With Noncognate Ssdna
Ggggttttggtg
pdb|1PH4|A Chain A, Crystal Structure Of The Oxytricha Nova Telomere
End-Binding Protein Complexed With Noncognate Ssdna
Ggggttttggcg
pdb|1PH7|A Chain A, Crystal Structure Of The Oxytricha Nova Telomere
End-Binding Protein Complexed With Noncognate Ssdna
Ggggttttgigg
pdb|1PH8|A Chain A, Crystal Structure Of The Oxytricha Nova Telomere End-
Binding Protein Complexed With Noncognate Ssdna
Ggggttttgcgg
pdb|1PH9|A Chain A, Crystal Structure Of The Oxytricha Nova Telomere
End-Binding Protein Complexed With Noncognate Ssdna
Ggggttttgagg
Length = 460
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 43 NSVVCRDASNQVFLAGPLKPRIPKLEELEIKNIKNETY 80
N + +DAS QVF LK + P + E+ I++ TY
Sbjct: 206 NELKLKDASGQVFYTLSLKLKFPHVRTGEVVRIRSATY 243
>pdb|1K8G|A Chain A, Crystal Structure Of The N-Terminal Domain Of Oxytricha
Nova Telomere End Binding Protein Alpha Subunit Both
Uncomplexed And Complexed With Telomeric Ssdna
pdb|1K8G|B Chain B, Crystal Structure Of The N-Terminal Domain Of Oxytricha
Nova Telomere End Binding Protein Alpha Subunit Both
Uncomplexed And Complexed With Telomeric Ssdna
pdb|1K8G|C Chain C, Crystal Structure Of The N-Terminal Domain Of Oxytricha
Nova Telomere End Binding Protein Alpha Subunit Both
Uncomplexed And Complexed With Telomeric Ssdna
Length = 320
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 43 NSVVCRDASNQVFLAGPLKPRIPKLEELEIKNIKNETY 80
N + +DAS QVF LK + P + E+ I++ TY
Sbjct: 241 NELKLKDASGQVFYTLSLKLKFPHVRTGEVVRIRSATY 278
>pdb|1PH2|A Chain A, Crystal Structure Of The Oxytricha Nova Telomere End-
Binding Protein Complexed With Noncognate Ssdna
Ggggttttg
pdb|1PH5|A Chain A, Crystal Structure Of The Oxytricha Nova Telomere End-
Binding Protein Complexed With Noncognate Ssdna
Ggggttttg(3dr)gg
Length = 459
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 43 NSVVCRDASNQVFLAGPLKPRIPKLEELEIKNIKNETY 80
N + +DAS QVF LK + P + E+ I++ TY
Sbjct: 206 NELKLKDASGQVFYTLSLKLKFPHVRTGEVVRIRSATY 243
>pdb|1PH1|A Chain A, Crystal Structure Of The Oxytricha Nova Telomere End-
Binding Protein Complexed With Noncognate Ssdna
Ggggttttggggt
pdb|1PH6|A Chain A, Crystal Structure Of The Oxytricha Nova Telomere End-
Binding Protein Complexed With Noncognate Ssdna
Ggggttttgtgg
pdb|1PHJ|A Chain A, Crystal Structure Of The Oxytricha Nova Telomere End-
Binding Protein Complexed With Noncognate Ssdna Gg(3dr)
Gttttgggg
Length = 461
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 43 NSVVCRDASNQVFLAGPLKPRIPKLEELEIKNIKNETY 80
N + +DAS QVF LK + P + E+ I++ TY
Sbjct: 207 NELKLKDASGQVFYTLSLKLKFPHVRTGEVVRIRSATY 244
>pdb|1OTC|A Chain A, The O. Nova Telomere End Binding Protein Complexed With
Single Strand Dna
pdb|1JB7|A Chain A, Dna G-Quartets In A 1.86 A Resolution Structure Of An
Oxytricha Nova Telomeric Protein-Dna Complex
pdb|1KIX|A Chain A, Dimeric Structure Of The O. Nova Telomere End Binding
Protein Alpha Subunit With Bound Ssdna
pdb|2I0Q|A Chain A, Crystal Structure Of A Telomere Single-Strand Dna-Protein
Complex From O. Nova With Full-Length Alpha And Beta
Telomere Proteins
Length = 495
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 43 NSVVCRDASNQVFLAGPLKPRIPKLEELEIKNIKNETY 80
N + +DAS QVF LK + P + E+ I++ TY
Sbjct: 241 NELKLKDASGQVFYTLSLKLKFPHVRTGEVVRIRSATY 278
>pdb|1XKI|A Chain A, Crystal Structure Of Human Tear LipocalinVON EBNERS GLAND
Protein
pdb|3EYC|A Chain A, New Crystal Structure Of Human Tear Lipocalin In Complex
With 1,4-Butanediol In Space Group P21
pdb|3EYC|B Chain B, New Crystal Structure Of Human Tear Lipocalin In Complex
With 1,4-Butanediol In Space Group P21
pdb|3EYC|C Chain C, New Crystal Structure Of Human Tear Lipocalin In Complex
With 1,4-Butanediol In Space Group P21
pdb|3EYC|D Chain D, New Crystal Structure Of Human Tear Lipocalin In Complex
With 1,4-Butanediol In Space Group P21
Length = 162
Score = 29.3 bits (64), Expect = 5.9, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 240 AEEGIQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVY 299
++E IQ SG Y ++ + E P + ++ P TL +LE GNL + L
Sbjct: 2 SDEEIQDVSGTWYLKAMTVDREF---PEMNL---ESVTPMTLTTLEGGNLEAKVTMLISG 55
Query: 300 GCSKVESIAERLD 312
C +V+++ E+ D
Sbjct: 56 RCQEVKAVLEKTD 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,626,305
Number of Sequences: 62578
Number of extensions: 610810
Number of successful extensions: 1313
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1290
Number of HSP's gapped (non-prelim): 28
length of query: 559
length of database: 14,973,337
effective HSP length: 104
effective length of query: 455
effective length of database: 8,465,225
effective search space: 3851677375
effective search space used: 3851677375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)