Query 035732
Match_columns 559
No_of_seqs 275 out of 2843
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 05:53:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035732.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035732hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.9E-34 6.4E-39 321.6 24.7 467 9-527 85-583 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.7E-33 3.7E-38 315.5 24.5 479 1-528 98-607 (968)
3 KOG4194 Membrane glycoprotein 99.9 5.4E-27 1.2E-31 225.1 5.2 365 66-501 79-448 (873)
4 KOG4194 Membrane glycoprotein 99.9 8.8E-27 1.9E-31 223.7 4.1 358 127-520 79-444 (873)
5 PLN03210 Resistant to P. syrin 99.9 2.6E-23 5.6E-28 233.5 24.3 289 126-483 611-908 (1153)
6 KOG0618 Serine/threonine phosp 99.9 9.3E-26 2E-30 227.9 -2.9 392 89-552 87-508 (1081)
7 PLN03210 Resistant to P. syrin 99.9 5.4E-22 1.2E-26 222.9 22.7 358 126-530 558-945 (1153)
8 KOG0444 Cytoskeletal regulator 99.9 2E-24 4.3E-29 209.2 -3.6 364 64-528 6-375 (1255)
9 KOG0472 Leucine-rich repeat pr 99.9 4.9E-25 1.1E-29 202.7 -13.4 401 64-527 67-540 (565)
10 KOG0472 Leucine-rich repeat pr 99.9 2.9E-25 6.3E-30 204.2 -15.0 414 11-510 62-544 (565)
11 KOG0444 Cytoskeletal regulator 99.8 7.3E-23 1.6E-27 198.4 -8.1 339 63-486 30-380 (1255)
12 KOG0618 Serine/threonine phosp 99.8 2.7E-21 5.9E-26 195.9 -4.6 408 11-504 62-488 (1081)
13 PRK15387 E3 ubiquitin-protein 99.5 6.9E-14 1.5E-18 146.8 14.7 254 126-446 201-455 (788)
14 PRK15387 E3 ubiquitin-protein 99.5 5.3E-14 1.1E-18 147.7 12.8 52 126-184 262-313 (788)
15 KOG4237 Extracellular matrix p 99.4 1.7E-14 3.7E-19 133.6 -1.9 369 60-477 61-497 (498)
16 PRK15370 E3 ubiquitin-protein 99.4 2.2E-12 4.8E-17 136.4 10.2 117 291-419 304-426 (754)
17 PRK15370 E3 ubiquitin-protein 99.3 2.8E-12 6.1E-17 135.6 9.8 115 292-419 242-357 (754)
18 KOG4237 Extracellular matrix p 99.2 7.1E-13 1.5E-17 123.0 -2.4 229 287-527 63-358 (498)
19 KOG0617 Ras suppressor protein 99.2 2.4E-13 5.3E-18 111.5 -5.3 159 336-510 30-190 (264)
20 KOG4341 F-box protein containi 99.2 6.2E-13 1.3E-17 124.4 -5.0 306 17-396 138-461 (483)
21 cd00116 LRR_RI Leucine-rich re 99.2 2.8E-12 6E-17 125.6 -0.9 257 292-555 24-318 (319)
22 cd00116 LRR_RI Leucine-rich re 99.2 3.6E-12 7.8E-17 124.8 -0.8 214 309-526 75-318 (319)
23 KOG4341 F-box protein containi 99.1 4.5E-12 9.8E-17 118.7 -3.9 282 65-396 138-435 (483)
24 KOG0617 Ras suppressor protein 99.0 1.9E-11 4.2E-16 100.5 -3.2 154 358-526 28-184 (264)
25 KOG4658 Apoptotic ATPase [Sign 98.9 2.3E-09 4.9E-14 115.7 8.6 106 64-182 544-651 (889)
26 KOG4658 Apoptotic ATPase [Sign 98.8 2.2E-09 4.7E-14 115.8 1.6 228 291-534 545-789 (889)
27 KOG3207 Beta-tubulin folding c 98.7 2.2E-09 4.8E-14 101.5 0.8 156 63-230 170-334 (505)
28 KOG1259 Nischarin, modulator o 98.6 3.1E-08 6.8E-13 89.3 2.5 130 363-510 284-416 (490)
29 PF14580 LRR_9: Leucine-rich r 98.5 5.9E-08 1.3E-12 83.7 2.9 105 384-503 16-124 (175)
30 PRK15386 type III secretion pr 98.5 7.9E-07 1.7E-11 86.3 10.7 92 311-416 48-140 (426)
31 KOG3207 Beta-tubulin folding c 98.5 2.8E-08 6E-13 94.3 0.8 107 406-526 195-312 (505)
32 PF14580 LRR_9: Leucine-rich r 98.5 5.1E-08 1.1E-12 84.1 2.2 127 313-445 17-149 (175)
33 KOG2120 SCF ubiquitin ligase, 98.5 3.1E-09 6.7E-14 95.6 -6.2 87 291-377 185-274 (419)
34 PRK15386 type III secretion pr 98.4 1.3E-06 2.7E-11 84.9 10.6 117 91-235 50-169 (426)
35 KOG1909 Ran GTPase-activating 98.3 9.6E-08 2.1E-12 88.2 -1.3 84 291-374 30-131 (382)
36 KOG2120 SCF ubiquitin ligase, 98.3 7.9E-08 1.7E-12 86.7 -2.2 183 127-326 186-374 (419)
37 KOG1259 Nischarin, modulator o 98.2 3.9E-07 8.5E-12 82.4 1.3 123 387-527 284-411 (490)
38 COG4886 Leucine-rich repeat (L 98.2 1.3E-06 2.9E-11 88.0 5.1 173 311-502 112-287 (394)
39 KOG1909 Ran GTPase-activating 98.2 5.5E-08 1.2E-12 89.8 -4.6 86 291-376 185-283 (382)
40 KOG0532 Leucine-rich repeat (L 98.2 9.8E-08 2.1E-12 93.6 -3.4 189 293-502 77-270 (722)
41 COG4886 Leucine-rich repeat (L 98.2 1.6E-06 3.5E-11 87.4 4.9 190 319-527 97-289 (394)
42 PF13855 LRR_8: Leucine rich r 97.9 8.7E-06 1.9E-10 57.3 3.5 58 292-349 2-59 (61)
43 PLN03150 hypothetical protein; 97.9 2.1E-05 4.5E-10 83.5 7.1 103 317-419 420-526 (623)
44 PF13855 LRR_8: Leucine rich r 97.9 1.9E-05 4.1E-10 55.6 4.6 59 316-374 2-60 (61)
45 KOG3665 ZYG-1-like serine/thre 97.9 6E-06 1.3E-10 87.3 2.1 155 63-230 120-283 (699)
46 KOG1859 Leucine-rich repeat pr 97.8 5E-07 1.1E-11 91.2 -6.3 222 313-556 82-321 (1096)
47 PLN03150 hypothetical protein; 97.7 9.2E-05 2E-09 78.6 8.8 72 87-167 436-507 (623)
48 KOG2982 Uncharacterized conser 97.7 9.4E-06 2E-10 73.6 1.0 65 291-355 199-265 (418)
49 KOG0531 Protein phosphatase 1, 97.6 1.6E-05 3.5E-10 80.4 0.2 123 291-419 95-219 (414)
50 KOG1859 Leucine-rich repeat pr 97.6 1.5E-06 3.3E-11 87.8 -7.4 180 12-210 104-290 (1096)
51 KOG0532 Leucine-rich repeat (L 97.5 3.4E-06 7.4E-11 83.1 -5.1 103 93-210 143-245 (722)
52 KOG2982 Uncharacterized conser 97.5 5.3E-05 1.2E-09 68.9 2.8 186 313-508 69-265 (418)
53 KOG1947 Leucine rich repeat pr 97.5 1.6E-05 3.5E-10 82.7 -0.9 122 13-163 184-308 (482)
54 KOG3665 ZYG-1-like serine/thre 97.4 4.9E-05 1.1E-09 80.6 1.6 109 63-185 146-262 (699)
55 KOG0531 Protein phosphatase 1, 97.4 4.6E-05 9.9E-10 77.1 1.3 99 126-231 95-195 (414)
56 PF12799 LRR_4: Leucine Rich r 97.3 0.0002 4.3E-09 46.1 2.9 41 468-510 1-41 (44)
57 PF12799 LRR_4: Leucine Rich r 97.3 0.0002 4.3E-09 46.1 2.5 33 127-160 2-34 (44)
58 KOG1947 Leucine rich repeat pr 97.1 5.2E-05 1.1E-09 78.8 -2.4 110 126-235 188-308 (482)
59 KOG1644 U2-associated snRNP A' 96.5 0.0041 9E-08 53.7 4.8 45 400-445 105-149 (233)
60 COG5238 RNA1 Ran GTPase-activa 96.5 0.00062 1.3E-08 61.3 -0.2 84 291-374 30-131 (388)
61 KOG2123 Uncharacterized conser 96.5 7.3E-05 1.6E-09 67.3 -6.1 54 364-419 20-74 (388)
62 COG5238 RNA1 Ran GTPase-activa 96.3 0.00077 1.7E-08 60.7 -0.6 58 292-349 186-252 (388)
63 KOG2739 Leucine-rich acidic nu 96.3 0.0011 2.4E-08 59.7 0.1 35 126-160 65-101 (260)
64 KOG4579 Leucine-rich repeat (L 96.2 0.00025 5.5E-09 57.0 -3.8 80 65-159 53-132 (177)
65 KOG1644 U2-associated snRNP A' 96.1 0.0098 2.1E-07 51.5 4.9 104 64-183 41-150 (233)
66 KOG2123 Uncharacterized conser 95.9 0.00037 8.1E-09 62.9 -4.6 102 337-442 17-123 (388)
67 KOG2739 Leucine-rich acidic nu 95.8 0.0045 9.7E-08 55.9 1.7 105 388-503 44-154 (260)
68 KOG4579 Leucine-rich repeat (L 95.3 0.0013 2.8E-08 53.1 -3.1 90 409-510 28-117 (177)
69 KOG3864 Uncharacterized conser 95.1 0.0037 8.1E-08 54.1 -1.0 83 67-160 103-186 (221)
70 PF13306 LRR_5: Leucine rich r 94.8 0.22 4.8E-06 40.9 8.7 102 61-182 8-112 (129)
71 KOG3864 Uncharacterized conser 94.0 0.011 2.4E-07 51.2 -0.8 63 64-136 124-186 (221)
72 PF13306 LRR_5: Leucine rich r 94.0 0.32 7E-06 39.9 8.0 106 11-159 6-112 (129)
73 PF13504 LRR_7: Leucine rich r 93.1 0.074 1.6E-06 26.2 1.6 16 493-509 2-17 (17)
74 PF00560 LRR_1: Leucine Rich R 92.9 0.054 1.2E-06 28.8 1.0 19 128-147 2-20 (22)
75 PF00560 LRR_1: Leucine Rich R 91.9 0.093 2E-06 27.8 1.2 16 470-486 2-17 (22)
76 smart00367 LRR_CC Leucine-rich 86.8 0.62 1.3E-05 25.8 2.1 17 92-108 1-17 (26)
77 smart00370 LRR Leucine-rich re 78.3 1.5 3.2E-05 24.2 1.4 18 492-510 2-19 (26)
78 smart00369 LRR_TYP Leucine-ric 78.3 1.5 3.2E-05 24.2 1.4 18 492-510 2-19 (26)
79 KOG3763 mRNA export factor TAP 74.4 1.8 4E-05 43.8 1.8 38 92-136 217-254 (585)
80 smart00364 LRR_BAC Leucine-ric 72.6 2.5 5.3E-05 23.4 1.2 18 492-510 2-19 (26)
81 PF13516 LRR_6: Leucine Rich r 56.6 7.5 0.00016 20.8 1.3 13 16-28 1-13 (24)
82 PF05725 FNIP: FNIP Repeat; I 40.9 58 0.0013 20.6 3.8 32 492-524 12-43 (44)
83 smart00365 LRR_SD22 Leucine-ri 39.8 24 0.00052 19.6 1.6 16 492-508 2-17 (26)
84 KOG3763 mRNA export factor TAP 30.2 35 0.00077 35.1 2.2 70 63-141 216-285 (585)
85 smart00368 LRR_RI Leucine rich 28.8 40 0.00087 18.9 1.4 13 126-138 2-14 (28)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.9e-34 Score=321.62 Aligned_cols=467 Identities=19% Similarity=0.210 Sum_probs=263.6
Q ss_pred CCccCCCccCccEEeecCCCce-EeeccCC-ccCcccceeeecCCcceeecCCCC-CCCCCccEEEeccccCccEEeccC
Q 035732 9 LSVSVSSLPAFCKLEIDGCKKV-LWRSATD-HLGSQNSVVCRDASNQVFLAGPLK-PRIPKLEELEIKNIKNETYIWKSH 85 (559)
Q Consensus 9 l~~~~~~l~~L~~L~l~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~ 85 (559)
+++.|..+++|+.|++++|... ..+...+ .+...+ ..+.++. .+.|.+| ..+++|++|+++++. +.. ..
T Consensus 85 ~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~---~L~Ls~n-~l~~~~p~~~l~~L~~L~Ls~n~-~~~---~~ 156 (968)
T PLN00113 85 ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLR---YLNLSNN-NFTGSIPRGSIPNLETLDLSNNM-LSG---EI 156 (968)
T ss_pred CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCC---EEECcCC-ccccccCccccCCCCEEECcCCc-ccc---cC
Confidence 3467889999999999998653 2222222 222222 2222211 1223333 257888888888773 322 33
Q ss_pred chhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccCCCCCCCCccceeeccCCCCccc
Q 035732 86 DELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLPQSSFSLSSLREIEIYNCSSLVS 165 (559)
Q Consensus 86 ~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~ 165 (559)
+..++.+++|++|++++|.-...++ ..+.++ ++|++|++++|.....+|..+..+++|++|++++|.....
T Consensus 157 p~~~~~l~~L~~L~L~~n~l~~~~p-----~~~~~l----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 227 (968)
T PLN00113 157 PNDIGSFSSLKVLDLGGNVLVGKIP-----NSLTNL----TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE 227 (968)
T ss_pred ChHHhcCCCCCEEECccCcccccCC-----hhhhhC----cCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCc
Confidence 4556788888888888863222332 245666 8888888888876567777788888888888888766556
Q ss_pred cC-CCCCCCCccEEEecccCCCcccCcccccCCCCCccEEecCCCCCccccccc-cCCCCcceEEeecccCccccchhhc
Q 035732 166 FP-EVALPSKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCRWLTFIAAV-QLPSSLKKLQIRRCDNIRTLTAEEG 243 (559)
Q Consensus 166 ~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~ 243 (559)
+| .+..+++|++|++++|.....+|..+ ..+++|+.|++++|.....++.. ..+++|+.|++++|.....+|..+.
T Consensus 228 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 305 (968)
T PLN00113 228 IPYEIGGLTSLNHLDLVYNNLTGPIPSSL--GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI 305 (968)
T ss_pred CChhHhcCCCCCEEECcCceeccccChhH--hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc
Confidence 66 36778888888888877555566553 34577888888877543334332 4567778887777543333443332
Q ss_pred cccccccccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEcCCCCccchHHhhccCCCCceEEee
Q 035732 244 IQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKVESIAERLDNNTSLEKISIK 323 (559)
Q Consensus 244 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 323 (559)
. + ++|+.|++.+ +.+.. ..|..+. .+ ++|+.|++.+|.....+|..+..+++|+.|+++
T Consensus 306 ~-------l--~~L~~L~l~~-n~~~~-----~~~~~~~-----~l-~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls 364 (968)
T PLN00113 306 Q-------L--QNLEILHLFS-NNFTG-----KIPVALT-----SL-PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLS 364 (968)
T ss_pred C-------C--CCCcEEECCC-CccCC-----cCChhHh-----cC-CCCCEEECcCCCCcCcCChHHhCCCCCcEEECC
Confidence 2 2 2377777766 33331 2222222 22 356666666655555555555566666666666
Q ss_pred ecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEeccccccccccccccccCCCcceEEecC-CCCC--
Q 035732 324 RCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALPKGLHNLTSLQHLTIGG-ALPS-- 400 (559)
Q Consensus 324 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~-- 400 (559)
+|.+...+|..+..+++|+.|++.+|.....+|..+..+++|+.|++++|.....+|..+..+++|+.|++++ .+..
T Consensus 365 ~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 444 (968)
T PLN00113 365 TNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI 444 (968)
T ss_pred CCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCcc
Confidence 6555544555555555555555555544334444444444555555555544444444444445555555444 2222
Q ss_pred -----------------------CcCCCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCCCceeecccc
Q 035732 401 -----------------------LEEDGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEN 457 (559)
Q Consensus 401 -----------------------~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 457 (559)
++.....++|+.|++++|+ +....+. .+..+++|+.|++++|.. ...+|.
T Consensus 445 ~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~-l~~~~~~---~~~~l~~L~~L~Ls~N~l-~~~~p~-- 517 (968)
T PLN00113 445 NSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQ-FSGAVPR---KLGSLSELMQLKLSENKL-SGEIPD-- 517 (968)
T ss_pred ChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCc-cCCccCh---hhhhhhccCEEECcCCcc-eeeCCh--
Confidence 2222223455555555555 3222222 355566666666666531 112222
Q ss_pred cccccccccccccceeeccccccccccccccccCCCcCeEEecCCCCCcccCCC-CCCCCceEEEecCChh
Q 035732 458 KRLGTALPLLASLTSLGISRFPNLERLSSSIVDLQNLTLLQLWGCPKLKYFPKK-GLPSSLLELDIVGCPL 527 (559)
Q Consensus 458 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~ 527 (559)
.+..+++|+.|++++|.....+|..+..+++|++|++++|+....+|.. .-+++|+.+++++|+.
T Consensus 518 -----~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l 583 (968)
T PLN00113 518 -----ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583 (968)
T ss_pred -----HHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcc
Confidence 2445667777777775555556666666777777777775433345542 2245677777777654
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.7e-33 Score=315.48 Aligned_cols=479 Identities=14% Similarity=0.149 Sum_probs=309.1
Q ss_pred CccccCC---CCCcc-CCCccCccEEeecCCCceEeeccCCccCcccceeeecCCcceeecCCCC---CCCCCccEEEec
Q 035732 1 LVIKGCE---ELSVS-VSSLPAFCKLEIDGCKKVLWRSATDHLGSQNSVVCRDASNQVFLAGPLK---PRIPKLEELEIK 73 (559)
Q Consensus 1 l~~~~c~---~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~l~~L~~L~l~ 73 (559)
|+++++. .+|.. +..+++|++|++++|......+. ..+...+. ...+.. .+.+.+| ..+++|++|+++
T Consensus 98 L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~---L~Ls~n-~~~~~~p~~~~~l~~L~~L~L~ 172 (968)
T PLN00113 98 INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNLET---LDLSNN-MLSGEIPNDIGSFSSLKVLDLG 172 (968)
T ss_pred EECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-cccCCCCE---EECcCC-cccccCChHHhcCCCCCEEECc
Confidence 3455553 34433 44889999999998865432221 11222222 111111 1122222 357788888888
Q ss_pred cccCccEEeccCchhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccCCCCCCCCccc
Q 035732 74 NIKNETYIWKSHDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLPQSSFSLSSLR 153 (559)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~ 153 (559)
++. +.. ..+..++.+++|++|++++|.-...+| ..+.++ ++|++|++++|.....+|..+..+++|+
T Consensus 173 ~n~-l~~---~~p~~~~~l~~L~~L~L~~n~l~~~~p-----~~l~~l----~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 239 (968)
T PLN00113 173 GNV-LVG---KIPNSLTNLTSLEFLTLASNQLVGQIP-----RELGQM----KSLKWIYLGYNNLSGEIPYEIGGLTSLN 239 (968)
T ss_pred cCc-ccc---cCChhhhhCcCCCeeeccCCCCcCcCC-----hHHcCc----CCccEEECcCCccCCcCChhHhcCCCCC
Confidence 773 322 334567888888888888864322333 245666 7888888888776557777778888888
Q ss_pred eeeccCCCCccccC-CCCCCCCccEEEecccCCCcccCcccccCCCCCccEEecCCCCCccccccc-cCCCCcceEEeec
Q 035732 154 EIEIYNCSSLVSFP-EVALPSKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCRWLTFIAAV-QLPSSLKKLQIRR 231 (559)
Q Consensus 154 ~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~ 231 (559)
+|++++|.....+| .+..+++|++|++++|.....+|..+ ..+++|++|++++|.....++.. ..+++|+.|++.+
T Consensus 240 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~ 317 (968)
T PLN00113 240 HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI--FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFS 317 (968)
T ss_pred EEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhH--hhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCC
Confidence 88888776555555 36677788888887776544555443 23466777777776533333332 4456677776666
Q ss_pred ccCccccchhhccccccccccccCCccEEEEecCCCccccccC-------------------CCCCccccccccCCCCCC
Q 035732 232 CDNIRTLTAEEGIQCSSGRRYTSSLLEELEIWDCPSLTCIFSK-------------------NELPATLESLEVGNLPPS 292 (559)
Q Consensus 232 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-------------------~~~~~~~~~l~~~~l~~~ 292 (559)
+......+..... + ++|+.|+++++ .+....|. +..|.++ ..+ .+
T Consensus 318 n~~~~~~~~~~~~-------l--~~L~~L~L~~n-~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~-----~~~-~~ 381 (968)
T PLN00113 318 NNFTGKIPVALTS-------L--PRLQVLQLWSN-KFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL-----CSS-GN 381 (968)
T ss_pred CccCCcCChhHhc-------C--CCCCEEECcCC-CCcCcCChHHhCCCCCcEEECCCCeeEeeCChhH-----hCc-CC
Confidence 4332223322221 1 12555555552 22210110 1111222 112 46
Q ss_pred ccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEeccc
Q 035732 293 LKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYD 372 (559)
Q Consensus 293 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 372 (559)
++.|++.+|......|..+..+++|+.|++++|.+...+|..+..+++|+.|++++|.....++.....+++|+.|++++
T Consensus 382 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 461 (968)
T PLN00113 382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461 (968)
T ss_pred CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcC
Confidence 67777777766666677777788888888888877777777778888888888888866555665556677899999998
Q ss_pred cccccccccccccCCCcceEEecC-CCCC-CcC-CCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCCC
Q 035732 373 CKRLEALPKGLHNLTSLQHLTIGG-ALPS-LEE-DGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDD 449 (559)
Q Consensus 373 ~~~~~~~~~~l~~l~~L~~L~l~~-~l~~-~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 449 (559)
|.....+|..+ ..++|+.|++++ .+.. ++. ...+++|++|++++|. +....+. .+..+++|+.|++++|.
T Consensus 462 n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~---~~~~l~~L~~L~Ls~N~-- 534 (968)
T PLN00113 462 NKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENK-LSGEIPD---ELSSCKKLVSLDLSHNQ-- 534 (968)
T ss_pred ceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCc-ceeeCCh---HHcCccCCCEEECCCCc--
Confidence 88776666654 458899999998 6553 332 4567899999999998 5544443 67889999999999985
Q ss_pred ceeecccccccccccccccccceeeccccccccccccccccCCCcCeEEecCCCCCcccCCCCCCCCceEEEecCChhh
Q 035732 450 MVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSSSIVDLQNLTLLQLWGCPKLKYFPKKGLPSSLLELDIVGCPLI 528 (559)
Q Consensus 450 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l 528 (559)
+...... .+..+++|+.|++++|.....+|..+..+.+|+.|++++|+....+|..+.+..+....+.+++.+
T Consensus 535 l~~~~p~------~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~l 607 (968)
T PLN00113 535 LSGQIPA------SFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDL 607 (968)
T ss_pred ccccCCh------hHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccc
Confidence 2222222 367789999999999887778998888999999999999876667887655555555566666644
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=5.4e-27 Score=225.13 Aligned_cols=365 Identities=16% Similarity=0.184 Sum_probs=220.4
Q ss_pred CccEEEeccccCccEEeccCchhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccCCC
Q 035732 66 KLEELEIKNIKNETYIWKSHDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLPQS 145 (559)
Q Consensus 66 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~~~ 145 (559)
.-++|+++++ .+.. +....|.++++|+++++.+ +.++.+|..+ ... .+|+.|+|.+|.+-+.-.+.
T Consensus 79 ~t~~LdlsnN-kl~~---id~~~f~nl~nLq~v~l~~-N~Lt~IP~f~-----~~s----ghl~~L~L~~N~I~sv~se~ 144 (873)
T KOG4194|consen 79 QTQTLDLSNN-KLSH---IDFEFFYNLPNLQEVNLNK-NELTRIPRFG-----HES----GHLEKLDLRHNLISSVTSEE 144 (873)
T ss_pred ceeeeecccc-cccc---CcHHHHhcCCcceeeeecc-chhhhccccc-----ccc----cceeEEeeeccccccccHHH
Confidence 3445666655 3333 4445556666666666665 3555555431 111 44666666665442222234
Q ss_pred CCCCCccceeeccCCCCccccC--CCCCCCCccEEEecccCCCcccCcccccCCCCCccEEecCCCCCccccccccCCCC
Q 035732 146 SFSLSSLREIEIYNCSSLVSFP--EVALPSKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCRWLTFIAAVQLPSS 223 (559)
Q Consensus 146 ~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 223 (559)
+..++.||+||++.| .+..++ .+..-.++++|++++|. ++.+...-| .++.+|..|.++.|
T Consensus 145 L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F-~~lnsL~tlkLsrN-------------- 207 (873)
T KOG4194|consen 145 LSALPALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHF-DSLNSLLTLKLSRN-------------- 207 (873)
T ss_pred HHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceEEeecccc-ccccccccc-cccchheeeecccC--------------
Confidence 455666666666654 333333 23333455566665555 333322211 22234555555554
Q ss_pred cceEEeecccCccccchhhccccccccccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEcCCCC
Q 035732 224 LKKLQIRRCDNIRTLTAEEGIQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSK 303 (559)
Q Consensus 224 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~~~~ 303 (559)
.++.+|...+.. .++|+.|++.. +++.. ... +.+.++ ++|+.|.+..|..
T Consensus 208 ----------rittLp~r~Fk~--------L~~L~~LdLnr-N~iri-ve~---------ltFqgL-~Sl~nlklqrN~I 257 (873)
T KOG4194|consen 208 ----------RITTLPQRSFKR--------LPKLESLDLNR-NRIRI-VEG---------LTFQGL-PSLQNLKLQRNDI 257 (873)
T ss_pred ----------cccccCHHHhhh--------cchhhhhhccc-cceee-ehh---------hhhcCc-hhhhhhhhhhcCc
Confidence 333333332221 12355555554 44432 111 111334 4788888888766
Q ss_pred ccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEecccccccccccccc
Q 035732 304 VESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALPKGL 383 (559)
Q Consensus 304 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 383 (559)
...-...|..|.++++|++..|+....-..++.+++.|+.|++++|.....-+..|..+++|++|+++.|.....-+..|
T Consensus 258 ~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf 337 (873)
T KOG4194|consen 258 SKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSF 337 (873)
T ss_pred ccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHH
Confidence 55445677888899999999888776555667888999999999986655556678888899999999887655555678
Q ss_pred ccCCCcceEEecC-CCCCCcC--CCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCCCceeeccccccc
Q 035732 384 HNLTSLQHLTIGG-ALPSLEE--DGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRL 460 (559)
Q Consensus 384 ~~l~~L~~L~l~~-~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 460 (559)
..+..|++|++++ .+..+.+ +..+++|++|+|++|. +..++.+....|.+++.|+.|++.+| .+..++...
T Consensus 338 ~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~-ls~~IEDaa~~f~gl~~LrkL~l~gN--qlk~I~krA--- 411 (873)
T KOG4194|consen 338 RVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE-LSWCIEDAAVAFNGLPSLRKLRLTGN--QLKSIPKRA--- 411 (873)
T ss_pred HHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe-EEEEEecchhhhccchhhhheeecCc--eeeecchhh---
Confidence 8888888888887 6666544 3456788888888887 55455444455677888888888877 366666644
Q ss_pred ccccccccccceeeccccccccccccccccCCCcCeEEecC
Q 035732 461 GTALPLLASLTSLGISRFPNLERLSSSIVDLQNLTLLQLWG 501 (559)
Q Consensus 461 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~ 501 (559)
|.++++|+.|++.++.....-+..|..+ .|++|.+..
T Consensus 412 ---fsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 412 ---FSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred ---hccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 7778888888888865544555566666 777776554
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=8.8e-27 Score=223.66 Aligned_cols=358 Identities=18% Similarity=0.186 Sum_probs=158.7
Q ss_pred ceeEEecccCCCCcccCCCCCCCCccceeeccCCCCccccCCCCCCC-CccEEEecccCCCcccCcccccCCCCCccEEe
Q 035732 127 RLEYLGLTSCHGLVKLPQSSFSLSSLREIEIYNCSSLVSFPEVALPS-KLKKIRISYCGALKSLPEAWMCDTNSSLEILN 205 (559)
Q Consensus 127 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 205 (559)
.-+.|++++|..-..-+..|.++++|+++.+..| .+..+|.++... +|+.|++.+|. +.++...-. ..++.|+.||
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L-~~l~alrslD 155 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNL-ISSVTSEEL-SALPALRSLD 155 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccc-hhhhcccccccccceeEEeeeccc-cccccHHHH-HhHhhhhhhh
Confidence 3344555554332222233445555555555543 344455443332 25555555544 222211100 1124455555
Q ss_pred cCCCCCccccccccC--CCCcceEEeecccCccccchhhccccccccccccCCccEEEEecCCCccccccCCCCCccccc
Q 035732 206 IEHCRWLTFIAAVQL--PSSLKKLQIRRCDNIRTLTAEEGIQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLES 283 (559)
Q Consensus 206 l~~~~~~~~~~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 283 (559)
++.| .+..++.... -.++++|++++ +.++.+..+.+.. +. +|..|.++. +.++. .|.. .+
T Consensus 156 LSrN-~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F~~------ln--sL~tlkLsr-Nritt-Lp~r----~F-- 217 (873)
T KOG4194|consen 156 LSRN-LISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHFDS------LN--SLLTLKLSR-NRITT-LPQR----SF-- 217 (873)
T ss_pred hhhc-hhhcccCCCCCCCCCceEEeecc-ccccccccccccc------cc--hheeeeccc-Ccccc-cCHH----Hh--
Confidence 5555 2333332211 13444444444 2333322222111 11 155555555 44443 2221 11
Q ss_pred cccCCCCCCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCC
Q 035732 284 LEVGNLPPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCA 363 (559)
Q Consensus 284 l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 363 (559)
.++ +.|+.|++..|..-..-.-.|.++++|+.|.+..|.+...--..|..+.++++|++..|.....-......+.
T Consensus 218 ---k~L-~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt 293 (873)
T KOG4194|consen 218 ---KRL-PKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT 293 (873)
T ss_pred ---hhc-chhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccc
Confidence 223 3555555555443222223445555555555555544433233344555555555555533222222233444
Q ss_pred CccEEeccccccccccccccccCCCcceEEecC-CCCCCcC--CCCCCCCceeeecCccchhhhhhhcccccccCccccE
Q 035732 364 KLTRLEIYDCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEE--DGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRR 440 (559)
Q Consensus 364 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~ 440 (559)
+|+.|++++|.+-..-++.....++|++|+++. .++.+++ +..++.|++|.|+.|. ++..-. ..|..+.+|++
T Consensus 294 ~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e---~af~~lssL~~ 369 (873)
T KOG4194|consen 294 SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAE---GAFVGLSSLHK 369 (873)
T ss_pred hhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc-hHHHHh---hHHHHhhhhhh
Confidence 555555555544333344455555555555555 5555544 2234555555555555 333322 24555555666
Q ss_pred EEEeecCCCceeecccccccccccccccccceeecccccccccccc-ccccCCCcCeEEecCCCCCcccCCCCC-CCCce
Q 035732 441 LTISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSS-SIVDLQNLTLLQLWGCPKLKYFPKKGL-PSSLL 518 (559)
Q Consensus 441 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~-~~~L~ 518 (559)
|+++.|.. ...-. +....|.++++|++|++.| ++++.++. .|.++++|++|++.+ |-+.++....+ +-.|+
T Consensus 370 LdLr~N~l--s~~IE---Daa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~-NaiaSIq~nAFe~m~Lk 442 (873)
T KOG4194|consen 370 LDLRSNEL--SWCIE---DAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGD-NAIASIQPNAFEPMELK 442 (873)
T ss_pred hcCcCCeE--EEEEe---cchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCC-Ccceeecccccccchhh
Confidence 65555421 11111 1112455556666666666 45555554 345556666666665 44555544333 22444
Q ss_pred EE
Q 035732 519 EL 520 (559)
Q Consensus 519 ~L 520 (559)
+|
T Consensus 443 ~L 444 (873)
T KOG4194|consen 443 EL 444 (873)
T ss_pred hh
Confidence 44
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=2.6e-23 Score=233.51 Aligned_cols=289 Identities=24% Similarity=0.389 Sum_probs=130.6
Q ss_pred CceeEEecccCCCCcccCCCCCCCCccceeeccCCCCccccCCCCCCCCccEEEecccCCCcccCcccccCCCCCccEEe
Q 035732 126 CRLEYLGLTSCHGLVKLPQSSFSLSSLREIEIYNCSSLVSFPEVALPSKLKKIRISYCGALKSLPEAWMCDTNSSLEILN 205 (559)
Q Consensus 126 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 205 (559)
.+|++|++.++. +..+|..+..+++|+.|+++++..+..+|.+..+++|++|++++|..+..+|..+ ..+++|+.|+
T Consensus 611 ~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si--~~L~~L~~L~ 687 (1153)
T PLN03210 611 ENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSI--QYLNKLEDLD 687 (1153)
T ss_pred cCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhh--hccCCCCEEe
Confidence 455555555543 2444444455555555555555444445544555555555555555444444432 2234455555
Q ss_pred cCCCCCccccccccCCCCcceEEeecccCccccchhhccccccccccccCCccEEEEecCCCccccccCCCCCccccccc
Q 035732 206 IEHCRWLTFIAAVQLPSSLKKLQIRRCDNIRTLTAEEGIQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLE 285 (559)
Q Consensus 206 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~ 285 (559)
+++|..++.++....+++|+.|.+++|..++.+|...
T Consensus 688 L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~------------------------------------------- 724 (1153)
T PLN03210 688 MSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDIS------------------------------------------- 724 (1153)
T ss_pred CCCCCCcCccCCcCCCCCCCEEeCCCCCCcccccccc-------------------------------------------
Confidence 5555444444443344455555555544444333211
Q ss_pred cCCCCCCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccc-------cccccCCCCCccceeecccccCceecCCC
Q 035732 286 VGNLPPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLK-------ILPSGLHNLRQLQEISIQICENLVSFPEG 358 (559)
Q Consensus 286 ~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 358 (559)
.+|+.|++.++. ...+|..+ .+++|++|.+.++.... ..+......++|+.|++++|+.+..+|..
T Consensus 725 -----~nL~~L~L~~n~-i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s 797 (1153)
T PLN03210 725 -----TNISWLDLDETA-IEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS 797 (1153)
T ss_pred -----CCcCeeecCCCc-cccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChh
Confidence 234444444433 22222221 23444444443322100 00111122345566666665555555555
Q ss_pred CCCCCCccEEeccccccccccccccccCCCcceEEecC--CCCCCcCCCCCCCCceeeecCccchhhhhhhcccccccCc
Q 035732 359 GLPCAKLTRLEIYDCKRLEALPKGLHNLTSLQHLTIGG--ALPSLEEDGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFS 436 (559)
Q Consensus 359 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~--~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~ 436 (559)
+..+++|+.|++++|..++.+|..+ .+++|+.|++++ .+..++. ...+|++|++++|. +.. ++ ..+..++
T Consensus 798 i~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~--~~~nL~~L~Ls~n~-i~~-iP---~si~~l~ 869 (1153)
T PLN03210 798 IQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD--ISTNISDLNLSRTG-IEE-VP---WWIEKFS 869 (1153)
T ss_pred hhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc--cccccCEeECCCCC-Ccc-Ch---HHHhcCC
Confidence 5555566666666655555555433 344444444444 2333322 12455555555554 221 11 1344555
Q ss_pred cccEEEEeecCCCceeecccccccccccccccccceeeccccccccc
Q 035732 437 SLRRLTISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLER 483 (559)
Q Consensus 437 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 483 (559)
+|+.|++++|.. +..++. ....+++|+.+++++|..+..
T Consensus 870 ~L~~L~L~~C~~-L~~l~~-------~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 870 NLSFLDMNGCNN-LQRVSL-------NISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred CCCEEECCCCCC-cCccCc-------ccccccCCCeeecCCCccccc
Confidence 555555555432 222322 123445555556666555543
No 6
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.90 E-value=9.3e-26 Score=227.89 Aligned_cols=392 Identities=22% Similarity=0.256 Sum_probs=233.0
Q ss_pred hhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccCCCCCCCCccceeeccCCCCccccCC
Q 035732 89 LQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLPQSSFSLSSLREIEIYNCSSLVSFPE 168 (559)
Q Consensus 89 ~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 168 (559)
...+.+|+++.|.. +.+..+|.+ +..+ .+|++|++++|.. ..+|..+..+..++.+..++|..+..++
T Consensus 87 ~~~~~~l~~lnL~~-n~l~~lP~~-----~~~l----knl~~LdlS~N~f-~~~Pl~i~~lt~~~~~~~s~N~~~~~lg- 154 (1081)
T KOG0618|consen 87 CSNMRNLQYLNLKN-NRLQSLPAS-----ISEL----KNLQYLDLSFNHF-GPIPLVIEVLTAEEELAASNNEKIQRLG- 154 (1081)
T ss_pred hhhhhcchhheecc-chhhcCchh-----HHhh----hcccccccchhcc-CCCchhHHhhhHHHHHhhhcchhhhhhc-
Confidence 34455555555543 344444432 4444 5555555555543 4445445555555555555542222222
Q ss_pred CCCCCCccEEEecccCCCcccCcccccCCCCCccE-EecCCCCCccccccccCCCCcceEEeecccCccccchhhccccc
Q 035732 169 VALPSKLKKIRISYCGALKSLPEAWMCDTNSSLEI-LNIEHCRWLTFIAAVQLPSSLKKLQIRRCDNIRTLTAEEGIQCS 247 (559)
Q Consensus 169 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~-L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 247 (559)
... ++.+++..+.....++.+. ..+++ |++++|... ......+.+|+.+.... ..+..+.
T Consensus 155 --~~~-ik~~~l~~n~l~~~~~~~i-----~~l~~~ldLr~N~~~--~~dls~~~~l~~l~c~r-n~ls~l~-------- 215 (1081)
T KOG0618|consen 155 --QTS-IKKLDLRLNVLGGSFLIDI-----YNLTHQLDLRYNEME--VLDLSNLANLEVLHCER-NQLSELE-------- 215 (1081)
T ss_pred --ccc-chhhhhhhhhcccchhcch-----hhhheeeecccchhh--hhhhhhccchhhhhhhh-cccceEE--------
Confidence 111 4444444444333333331 33444 777777432 22223344444444332 2222111
Q ss_pred cccccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEcCCCCccchHHhhccCCCCceEEeeecCc
Q 035732 248 SGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGT 327 (559)
Q Consensus 248 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 327 (559)
..+++++.|+...+.-. . ..+...|.++++++++++. ...+|.++..+.+|+.+...+|.+
T Consensus 216 ----~~g~~l~~L~a~~n~l~-~-------------~~~~p~p~nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n~N~l 276 (1081)
T KOG0618|consen 216 ----ISGPSLTALYADHNPLT-T-------------LDVHPVPLNLQYLDISHNN-LSNLPEWIGACANLEALNANHNRL 276 (1081)
T ss_pred ----ecCcchheeeeccCcce-e-------------eccccccccceeeecchhh-hhcchHHHHhcccceEecccchhH
Confidence 12234666666663222 1 1124566899999999975 566779999999999999999877
Q ss_pred cccccccCCCCCccceeecccccCceecCCCCCCCCCccEEecccccccccccccc-ccCC-CcceEEecC-CCCCCcC-
Q 035732 328 LKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALPKGL-HNLT-SLQHLTIGG-ALPSLEE- 403 (559)
Q Consensus 328 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~l~-~L~~L~l~~-~l~~~~~- 403 (559)
..+|..+....+|+.|.+.+| .++.+|+.......|++|++..|. +..+|+.+ .... +|..++.+. .++..+.
T Consensus 277 -~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~ 353 (1081)
T KOG0618|consen 277 -VALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSY 353 (1081)
T ss_pred -HhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccc
Confidence 556777788899999999988 567777777777799999999885 55666533 2222 256666665 5555554
Q ss_pred -CCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCCCceeecccccccccccccccccceeecccccccc
Q 035732 404 -DGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLE 482 (559)
Q Consensus 404 -~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 482 (559)
....+.|+.|.+.+|+....+++. +.++.+||.|++++| .+..||+.. +..+..|++|+++| +.++
T Consensus 354 ~e~~~~~Lq~LylanN~Ltd~c~p~----l~~~~hLKVLhLsyN--rL~~fpas~------~~kle~LeeL~LSG-NkL~ 420 (1081)
T KOG0618|consen 354 EENNHAALQELYLANNHLTDSCFPV----LVNFKHLKVLHLSYN--RLNSFPASK------LRKLEELEELNLSG-NKLT 420 (1081)
T ss_pred cchhhHHHHHHHHhcCcccccchhh----hccccceeeeeeccc--ccccCCHHH------HhchHHhHHHhccc-chhh
Confidence 234578999999999955556654 888999999999988 477788865 77788899999999 6777
Q ss_pred cccccccc----------------------CCCcCeEEecCCCCCcccCC-CCCC-CCceEEEecCChhhhhhhhccCcc
Q 035732 483 RLSSSIVD----------------------LQNLTLLQLWGCPKLKYFPK-KGLP-SSLLELDIVGCPLIEEKCRKDGGQ 538 (559)
Q Consensus 483 ~~~~~~~~----------------------~~~L~~L~l~~c~~l~~l~~-~~~~-~~L~~L~l~~c~~l~~~~~~~~~~ 538 (559)
.+|..+.. ++.|+.+|++. |.|+.+.- ...+ ++|+.||++||+++. .+..
T Consensus 421 ~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~l~-----~d~~ 494 (1081)
T KOG0618|consen 421 TLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTRLV-----FDHK 494 (1081)
T ss_pred hhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCcccc-----cchh
Confidence 77754444 44555555554 45554222 1233 566666666665521 2233
Q ss_pred cccccCCCceeEEe
Q 035732 539 YWDLLTHIPYVLIA 552 (559)
Q Consensus 539 ~~~~~~~~~~~~~~ 552 (559)
.+..++++..++++
T Consensus 495 ~l~~l~~l~~~~i~ 508 (1081)
T KOG0618|consen 495 TLKVLKSLSQMDIT 508 (1081)
T ss_pred hhHHhhhhhheecc
Confidence 44445555555554
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=5.4e-22 Score=222.92 Aligned_cols=358 Identities=23% Similarity=0.348 Sum_probs=248.0
Q ss_pred CceeEEecccCC------CCcccCCCCCCCC-ccceeeccCCCCccccCCCCCCCCccEEEecccCCCcccCcccccCCC
Q 035732 126 CRLEYLGLTSCH------GLVKLPQSSFSLS-SLREIEIYNCSSLVSFPEVALPSKLKKIRISYCGALKSLPEAWMCDTN 198 (559)
Q Consensus 126 ~~L~~L~l~~~~------~l~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 198 (559)
++|+.|.+.++. ....+|..+..+| +|+.|.+.++ .+..+|....+.+|++|++.++. +..++... ..+
T Consensus 558 ~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f~~~~L~~L~L~~s~-l~~L~~~~--~~l 633 (1153)
T PLN03210 558 RNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNFRPENLVKLQMQGSK-LEKLWDGV--HSL 633 (1153)
T ss_pred ccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCcCCccCCcEEECcCcc-cccccccc--ccC
Confidence 666666654331 0113455555443 4666766664 34555544455677777777665 55555443 334
Q ss_pred CCccEEecCCCCCccccccccCCCCcceEEeecccCccccchhhccccccccccccCCccEEEEecCCCccccccCCCCC
Q 035732 199 SSLEILNIEHCRWLTFIAAVQLPSSLKKLQIRRCDNIRTLTAEEGIQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELP 278 (559)
Q Consensus 199 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 278 (559)
++|+.|+++++..+..++....+++|+.|++.+|..+..+|..+.. ++ +|+.|++.+|+.++. +|..
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~-------L~--~L~~L~L~~c~~L~~-Lp~~--- 700 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQY-------LN--KLEDLDMSRCENLEI-LPTG--- 700 (1153)
T ss_pred CCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhc-------cC--CCCEEeCCCCCCcCc-cCCc---
Confidence 6677777777666666666666677778887777777777665443 22 388888888877776 4432
Q ss_pred ccccccccCCCCCCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCce-----
Q 035732 279 ATLESLEVGNLPPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLV----- 353 (559)
Q Consensus 279 ~~~~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~----- 353 (559)
..+ ++|+.|.+++|..+..+|.. ..+|+.|+++++.+ ..+|..+ .+++|++|.+.++....
T Consensus 701 --------i~l-~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i-~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~ 766 (1153)
T PLN03210 701 --------INL-KSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAI-EEFPSNL-RLENLDELILCEMKSEKLWERV 766 (1153)
T ss_pred --------CCC-CCCCEEeCCCCCCccccccc---cCCcCeeecCCCcc-ccccccc-cccccccccccccchhhccccc
Confidence 122 68999999998877766643 46889999998864 4566554 57889999887753211
Q ss_pred -ec-CCCCCCCCCccEEeccccccccccccccccCCCcceEEecC--CCCCCcCCCCCCCCceeeecCccchhhhhhhcc
Q 035732 354 -SF-PEGGLPCAKLTRLEIYDCKRLEALPKGLHNLTSLQHLTIGG--ALPSLEEDGLPTNLQLLNIEGNMEIWKSMIERG 429 (559)
Q Consensus 354 -~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~--~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 429 (559)
.+ +.....+++|+.|++++|..+..+|..+.++++|+.|++++ .+..+|....+++|+.|++++|..+.. ++
T Consensus 767 ~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~-~p--- 842 (1153)
T PLN03210 767 QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRT-FP--- 842 (1153)
T ss_pred cccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccc-cc---
Confidence 11 11122346899999999999999999999999999999998 677787766789999999999986542 22
Q ss_pred cccccCccccEEEEeecCCCceeecccccccccccccccccceeeccccccccccccccccCCCcCeEEecCCCCCcccC
Q 035732 430 RGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSSSIVDLQNLTLLQLWGCPKLKYFP 509 (559)
Q Consensus 430 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 509 (559)
...++|+.|++++|. +..+|. .+..+++|+.|++++|+.++.+|..+..+++|+.+++++|..++.++
T Consensus 843 ---~~~~nL~~L~Ls~n~--i~~iP~-------si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 843 ---DISTNISDLNLSRTG--IEEVPW-------WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred ---ccccccCEeECCCCC--CccChH-------HHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 234689999999873 555665 25567899999999999999999888889999999999999998765
Q ss_pred CCCCC--------------CCceEEEecCChhhhh
Q 035732 510 KKGLP--------------SSLLELDIVGCPLIEE 530 (559)
Q Consensus 510 ~~~~~--------------~~L~~L~l~~c~~l~~ 530 (559)
....+ +....+.+.+|.++..
T Consensus 911 l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~ 945 (1153)
T PLN03210 911 WNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQ 945 (1153)
T ss_pred CCCCchhhhhhcccccccCCchhccccccccCCCc
Confidence 42221 2334456778877653
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=2e-24 Score=209.18 Aligned_cols=364 Identities=18% Similarity=0.225 Sum_probs=213.8
Q ss_pred CCCccEEEeccccCccEEeccCchhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccC
Q 035732 64 IPKLEELEIKNIKNETYIWKSHDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLP 143 (559)
Q Consensus 64 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~ 143 (559)
+|-.+-.+++++.- . +.-.+.....+.+++-|.|.. .++..+|.+ ++.+ .+|++|.+++|.. ..+.
T Consensus 6 LpFVrGvDfsgNDF-s--g~~FP~~v~qMt~~~WLkLnr-t~L~~vPeE-----L~~l----qkLEHLs~~HN~L-~~vh 71 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDF-S--GDRFPHDVEQMTQMTWLKLNR-TKLEQVPEE-----LSRL----QKLEHLSMAHNQL-ISVH 71 (1255)
T ss_pred cceeecccccCCcC-C--CCcCchhHHHhhheeEEEech-hhhhhChHH-----HHHH----hhhhhhhhhhhhh-Hhhh
Confidence 45566667766532 1 124445667899999999988 478887754 7888 9999999999864 6777
Q ss_pred CCCCCCCccceeeccCCCCc-cccC-CCCCCCCccEEEecccCCCcccCcccccCCCCCccEEecCCCCCccccccc--c
Q 035732 144 QSSFSLSSLREIEIYNCSSL-VSFP-EVALPSKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCRWLTFIAAV--Q 219 (559)
Q Consensus 144 ~~~~~l~~L~~L~l~~~~~~-~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~ 219 (559)
..+..+|.||++.+++|..- ..+| .+..+..|..|++++|. ++..|... ...+++-.|++++|. +..+|.. .
T Consensus 72 GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~L--E~AKn~iVLNLS~N~-IetIPn~lfi 147 (1255)
T KOG0444|consen 72 GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNL--EYAKNSIVLNLSYNN-IETIPNSLFI 147 (1255)
T ss_pred hhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhh-hhhcchhh--hhhcCcEEEEcccCc-cccCCchHHH
Confidence 77889999999999987422 2244 57788888899998887 67777653 222666777777763 4444432 1
Q ss_pred CCCCcceEEeecccCccccchhhccccccccccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEc
Q 035732 220 LPSSLKKLQIRRCDNIRTLTAEEGIQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVY 299 (559)
Q Consensus 220 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~ 299 (559)
.++.|-.|++++ +.++.+|+... ++ ..|++|.++
T Consensus 148 nLtDLLfLDLS~-NrLe~LPPQ~R--------------------------------------------RL-~~LqtL~Ls 181 (1255)
T KOG0444|consen 148 NLTDLLFLDLSN-NRLEMLPPQIR--------------------------------------------RL-SMLQTLKLS 181 (1255)
T ss_pred hhHhHhhhcccc-chhhhcCHHHH--------------------------------------------HH-hhhhhhhcC
Confidence 222333333333 22333332222 11 345555555
Q ss_pred CCCCccchHHhhccCCCCceEEeeecCccc-cccccCCCCCccceeecccccCceecCCCCCCCCCccEEeccccccccc
Q 035732 300 GCSKVESIAERLDNNTSLEKISIKRCGTLK-ILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEA 378 (559)
Q Consensus 300 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 378 (559)
+|+........+.++++|++|.+++.+.+- .+|.++..+.+|+.++++.| .+..+|......++|+.|++++|.. +.
T Consensus 182 ~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~i-te 259 (1255)
T KOG0444|consen 182 NNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNKI-TE 259 (1255)
T ss_pred CChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcCce-ee
Confidence 555433223334455666666666654332 45666666666666666655 3344555555555566666655542 22
Q ss_pred cccccccCCCcceEEecCCCCCCcCCCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCCCceeeccccc
Q 035732 379 LPKGLHNLTSLQHLTIGGALPSLEEDGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENK 458 (559)
Q Consensus 379 ~~~~l~~l~~L~~L~l~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 458 (559)
+....... .+|++|+++.|+ ++. .+ ..+.+++.|+.|++.+|....+.+|.+
T Consensus 260 L~~~~~~W---------------------~~lEtLNlSrNQ-Lt~-LP---~avcKL~kL~kLy~n~NkL~FeGiPSG-- 311 (1255)
T KOG0444|consen 260 LNMTEGEW---------------------ENLETLNLSRNQ-LTV-LP---DAVCKLTKLTKLYANNNKLTFEGIPSG-- 311 (1255)
T ss_pred eeccHHHH---------------------hhhhhhccccch-hcc-ch---HHHhhhHHHHHHHhccCcccccCCccc--
Confidence 22222222 455555555555 321 22 245566666666666655445555552
Q ss_pred ccccccccccccceeeccccccccccccccccCCCcCeEEecCCCCCcccCCC-CCCCCceEEEecCChhh
Q 035732 459 RLGTALPLLASLTSLGISRFPNLERLSSSIVDLQNLTLLQLWGCPKLKYFPKK-GLPSSLLELDIVGCPLI 528 (559)
Q Consensus 459 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l 528 (559)
+..+.+|+.+...+ +.++.+|.++..|+.|+.|.+.. |.+-.+|++ .+++-|+.||++.||++
T Consensus 312 -----IGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 312 -----IGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred -----hhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCc
Confidence 34456666666666 55666666666666666666665 556666663 44566666666666654
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.85 E-value=4.9e-25 Score=202.70 Aligned_cols=401 Identities=22% Similarity=0.262 Sum_probs=231.2
Q ss_pred CCCccEEEeccccCccEEeccCchhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccC
Q 035732 64 IPKLEELEIKNIKNETYIWKSHDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLP 143 (559)
Q Consensus 64 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~ 143 (559)
+..|+.+++.+.. +.. .+ ..++.+..++.++.++ +++..+|+. +..+ ++|.+++.++|.. .++|
T Consensus 67 L~~l~vl~~~~n~-l~~---lp-~aig~l~~l~~l~vs~-n~ls~lp~~-----i~s~----~~l~~l~~s~n~~-~el~ 130 (565)
T KOG0472|consen 67 LACLTVLNVHDNK-LSQ---LP-AAIGELEALKSLNVSH-NKLSELPEQ-----IGSL----ISLVKLDCSSNEL-KELP 130 (565)
T ss_pred ccceeEEEeccch-hhh---CC-HHHHHHHHHHHhhccc-chHhhccHH-----Hhhh----hhhhhhhccccce-eecC
Confidence 4555555555542 222 33 3456777777777777 366666543 5555 6777777777644 5666
Q ss_pred CCCCCCCccceeeccCCCCccccCCCCCCCCccEEEecccCCCcccCcccccCCCCCccEEecCCCCCccccccc-cCCC
Q 035732 144 QSSFSLSSLREIEIYNCSSLVSFPEVALPSKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCRWLTFIAAV-QLPS 222 (559)
Q Consensus 144 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~ 222 (559)
++++.+..++.++..+|...+..+....+.+|..+++.+|+ +..+|+... .++.|++|+...| .++.+|.. +.+.
T Consensus 131 ~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i--~m~~L~~ld~~~N-~L~tlP~~lg~l~ 206 (565)
T KOG0472|consen 131 DSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHI--AMKRLKHLDCNSN-LLETLPPELGGLE 206 (565)
T ss_pred chHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHH--HHHHHHhcccchh-hhhcCChhhcchh
Confidence 66777777777777665433333346666667777777766 445554432 2466777777666 35555544 5566
Q ss_pred CcceEEeecccCccccchhhccccccccccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEcCCC
Q 035732 223 SLKKLQIRRCDNIRTLTAEEGIQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCS 302 (559)
Q Consensus 223 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~~~ 302 (559)
+|.-|++.+ +++..+|...+.. .|++++++. +.++. .|.+ .+ .++ .++..|+++.|.
T Consensus 207 ~L~~LyL~~-Nki~~lPef~gcs----------~L~Elh~g~-N~i~~-lpae----~~-----~~L-~~l~vLDLRdNk 263 (565)
T KOG0472|consen 207 SLELLYLRR-NKIRFLPEFPGCS----------LLKELHVGE-NQIEM-LPAE----HL-----KHL-NSLLVLDLRDNK 263 (565)
T ss_pred hhHHHHhhh-cccccCCCCCccH----------HHHHHHhcc-cHHHh-hHHH----Hh-----ccc-ccceeeeccccc
Confidence 666666666 4555555322221 166666655 44442 2221 11 234 477788887764
Q ss_pred CccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCce------------------------e----
Q 035732 303 KVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLV------------------------S---- 354 (559)
Q Consensus 303 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------------------------~---- 354 (559)
++..|..+.-+.+|++||+++|.+. .+|.+++++ .|+.|.+.+|+.-+ .
T Consensus 264 -lke~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~s 340 (565)
T KOG0472|consen 264 -LKEVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQS 340 (565)
T ss_pred -cccCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCC
Confidence 5667777777888888888877543 467777777 77777777765210 0
Q ss_pred ---------cCCC----CCCCCCccEEeccccccccccccccccCCC---cceEEecC-CCCC-----------------
Q 035732 355 ---------FPEG----GLPCAKLTRLEIYDCKRLEALPKGLHNLTS---LQHLTIGG-ALPS----------------- 400 (559)
Q Consensus 355 ---------~~~~----~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~---L~~L~l~~-~l~~----------------- 400 (559)
.+.. ....-+.+.|++++- .++.+|+.+..... ...++++. .+..
T Consensus 341 e~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~-qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~l 419 (565)
T KOG0472|consen 341 EGGTETAMTLPSESFPDIYAIITTKILDVSDK-QLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVL 419 (565)
T ss_pred cccccccCCCCCCcccchhhhhhhhhhccccc-ccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHh
Confidence 0000 011124555666553 23444432211111 23333333 2221
Q ss_pred -------CcC-CCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCCCceeecccccccccccccccccce
Q 035732 401 -------LEE-DGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTALPLLASLTS 472 (559)
Q Consensus 401 -------~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 472 (559)
++. ...+++|+.|++++|. +.+... .+..+..|++|+++.| +...+|. +...+..|+.
T Consensus 420 snn~isfv~~~l~~l~kLt~L~L~NN~-Ln~LP~----e~~~lv~Lq~LnlS~N--rFr~lP~-------~~y~lq~lEt 485 (565)
T KOG0472|consen 420 SNNKISFVPLELSQLQKLTFLDLSNNL-LNDLPE----EMGSLVRLQTLNLSFN--RFRMLPE-------CLYELQTLET 485 (565)
T ss_pred hcCccccchHHHHhhhcceeeecccch-hhhcch----hhhhhhhhheeccccc--ccccchH-------HHhhHHHHHH
Confidence 111 3456788888888886 443332 4667777888888877 3333443 1212234444
Q ss_pred eeccccccccccccc-cccCCCcCeEEecCCCCCcccCCC-CCCCCceEEEecCChh
Q 035732 473 LGISRFPNLERLSSS-IVDLQNLTLLQLWGCPKLKYFPKK-GLPSSLLELDIVGCPL 527 (559)
Q Consensus 473 L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~ 527 (559)
+-.++ +.+..++.. +.++.+|.+|++.+ |.+..+|+. +-..+|+.|+++|+|-
T Consensus 486 llas~-nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 486 LLASN-NQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred HHhcc-ccccccChHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCcc
Confidence 44444 667776654 67788888888888 678888873 4467888888888873
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.85 E-value=2.9e-25 Score=204.21 Aligned_cols=414 Identities=21% Similarity=0.243 Sum_probs=243.0
Q ss_pred ccCCCccCccEEeecCCCceEeeccCCccCcccceeeecCCcceeecCCCCCCCCCccEEEeccccCccEEeccCchhhh
Q 035732 11 VSVSSLPAFCKLEIDGCKKVLWRSATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHDELLQ 90 (559)
Q Consensus 11 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 90 (559)
+.+..++.|.+|++..+...+.+++.. .+..++.++++.. ++.. ++ +.++
T Consensus 62 ~dl~nL~~l~vl~~~~n~l~~lp~aig-------------------------~l~~l~~l~vs~n-~ls~---lp-~~i~ 111 (565)
T KOG0472|consen 62 EDLKNLACLTVLNVHDNKLSQLPAAIG-------------------------ELEALKSLNVSHN-KLSE---LP-EQIG 111 (565)
T ss_pred HhhhcccceeEEEeccchhhhCCHHHH-------------------------HHHHHHHhhcccc-hHhh---cc-HHHh
Confidence 445667777888887777766555433 2445555555544 2222 33 3446
Q ss_pred ccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccCCCCCCCCccceeeccCCCCccccCCCC
Q 035732 91 DICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLPQSSFSLSSLREIEIYNCSSLVSFPEVA 170 (559)
Q Consensus 91 ~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 170 (559)
+..+|+.+++++. .+..++++ +.++ ..|+.++..+|.. ..+|.++..+.++..+++.+|......|...
T Consensus 112 s~~~l~~l~~s~n-~~~el~~~-----i~~~----~~l~dl~~~~N~i-~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i 180 (565)
T KOG0472|consen 112 SLISLVKLDCSSN-ELKELPDS-----IGRL----LDLEDLDATNNQI-SSLPEDMVNLSKLSKLDLEGNKLKALPENHI 180 (565)
T ss_pred hhhhhhhhhcccc-ceeecCch-----HHHH----hhhhhhhcccccc-ccCchHHHHHHHHHHhhccccchhhCCHHHH
Confidence 6677777777663 55555543 4444 5566666666543 5666666666666666666654333333344
Q ss_pred CCCCccEEEecccCCCcccCcccccCCCCCccEEecCCCCCccccccccCCCCcceEEeecccCccccchhhcccccccc
Q 035732 171 LPSKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCRWLTFIAAVQLPSSLKKLQIRRCDNIRTLTAEEGIQCSSGR 250 (559)
Q Consensus 171 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 250 (559)
.++.|++|+..+|- ++.+|+++ .++.+|.-|++..| .+..+|....+..|+.|++.. +.++.+|+....+.
T Consensus 181 ~m~~L~~ld~~~N~-L~tlP~~l--g~l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g~-N~i~~lpae~~~~L---- 251 (565)
T KOG0472|consen 181 AMKRLKHLDCNSNL-LETLPPEL--GGLESLELLYLRRN-KIRFLPEFPGCSLLKELHVGE-NQIEMLPAEHLKHL---- 251 (565)
T ss_pred HHHHHHhcccchhh-hhcCChhh--cchhhhHHHHhhhc-ccccCCCCCccHHHHHHHhcc-cHHHhhHHHHhccc----
Confidence 46666666666654 55666554 34456666666666 355566556666666666655 45555555444321
Q ss_pred ccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccc-
Q 035732 251 RYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLK- 329 (559)
Q Consensus 251 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~- 329 (559)
+++..||+.+ +++++ . |..++-+ .+|++|++++|. ...+|..++++ .|+.|.+.+|...+
T Consensus 252 ----~~l~vLDLRd-Nklke-~-----Pde~clL------rsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNPlrTi 312 (565)
T KOG0472|consen 252 ----NSLLVLDLRD-NKLKE-V-----PDEICLL------RSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNPLRTI 312 (565)
T ss_pred ----ccceeeeccc-ccccc-C-----chHHHHh------hhhhhhcccCCc-cccCCcccccc-eeeehhhcCCchHHH
Confidence 2366666666 45543 2 2233222 456666666654 34455566666 66666666654211
Q ss_pred --c-----------------------------------ccccC---CCCCccceeecccccCceecCCCCCCC---CCcc
Q 035732 330 --I-----------------------------------LPSGL---HNLRQLQEISIQICENLVSFPEGGLPC---AKLT 366 (559)
Q Consensus 330 --~-----------------------------------~~~~~---~~l~~L~~L~l~~~~~~~~~~~~~~~~---~~L~ 366 (559)
+ .+..+ ....+.+.|++++- .++.+|...+.. .-+.
T Consensus 313 Rr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~-qlt~VPdEVfea~~~~~Vt 391 (565)
T KOG0472|consen 313 RREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK-QLTLVPDEVFEAAKSEIVT 391 (565)
T ss_pred HHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc-ccccCCHHHHHHhhhcceE
Confidence 0 00011 11334455555542 333444321111 1134
Q ss_pred EEeccccc-----------------------cccccccccccCCCcceEEecC-CCCCCcC-CCCCCCCceeeecCccch
Q 035732 367 RLEIYDCK-----------------------RLEALPKGLHNLTSLQHLTIGG-ALPSLEE-DGLPTNLQLLNIEGNMEI 421 (559)
Q Consensus 367 ~L~l~~~~-----------------------~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~-~~~~~~L~~L~l~~~~~l 421 (559)
.+++++|. ++..+|..+..+++|..|+++. -+.++|. .+.+..|+.|+++.|+ .
T Consensus 392 ~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~Nr-F 470 (565)
T KOG0472|consen 392 SVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNR-F 470 (565)
T ss_pred EEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccc-c
Confidence 44444432 3445566678899999999999 6677765 4556779999999996 3
Q ss_pred hhhhhhcccccccCccccEEEEeecCCCceeecccccccccccccccccceeeccccccccccccccccCCCcCeEEecC
Q 035732 422 WKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSSSIVDLQNLTLLQLWG 501 (559)
Q Consensus 422 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~ 501 (559)
. ..|.....+..++.+-.++| .+..++.++ +.++.+|.+|++.+ +.++.+|.++++|.+|++|.++|
T Consensus 471 r----~lP~~~y~lq~lEtllas~n--qi~~vd~~~------l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~g 537 (565)
T KOG0472|consen 471 R----MLPECLYELQTLETLLASNN--QIGSVDPSG------LKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDG 537 (565)
T ss_pred c----cchHHHhhHHHHHHHHhccc--cccccChHH------hhhhhhcceeccCC-CchhhCChhhccccceeEEEecC
Confidence 2 22224444555666666655 456666654 77889999999999 77999999999999999999999
Q ss_pred CCCCcccCC
Q 035732 502 CPKLKYFPK 510 (559)
Q Consensus 502 c~~l~~l~~ 510 (559)
+| ++ .|.
T Consensus 538 Np-fr-~Pr 544 (565)
T KOG0472|consen 538 NP-FR-QPR 544 (565)
T ss_pred Cc-cC-CCH
Confidence 54 55 554
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=7.3e-23 Score=198.40 Aligned_cols=339 Identities=19% Similarity=0.314 Sum_probs=237.3
Q ss_pred CCCCccEEEeccccCccEEeccCchhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCC-cc
Q 035732 63 RIPKLEELEIKNIKNETYIWKSHDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGL-VK 141 (559)
Q Consensus 63 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l-~~ 141 (559)
.++.++-|++.+- .+.. +| +-++.+.+|++|.++++ ++..+..+ +..| |.|+.+.+.+|..- ..
T Consensus 30 qMt~~~WLkLnrt-~L~~---vP-eEL~~lqkLEHLs~~HN-~L~~vhGE-----Ls~L----p~LRsv~~R~N~LKnsG 94 (1255)
T KOG0444|consen 30 QMTQMTWLKLNRT-KLEQ---VP-EELSRLQKLEHLSMAHN-QLISVHGE-----LSDL----PRLRSVIVRDNNLKNSG 94 (1255)
T ss_pred HhhheeEEEechh-hhhh---Ch-HHHHHHhhhhhhhhhhh-hhHhhhhh-----hccc----hhhHHHhhhccccccCC
Confidence 4677777777765 4444 66 45688999999999994 77777654 7777 99999999987532 37
Q ss_pred cCCCCCCCCccceeeccCCCCccccC-CCCCCCCccEEEecccCCCcccCcccccCCCCCccEEecCCCCCccccccc-c
Q 035732 142 LPQSSFSLSSLREIEIYNCSSLVSFP-EVALPSKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCRWLTFIAAV-Q 219 (559)
Q Consensus 142 ~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~ 219 (559)
+|..+..+..|..|+++.| .+...| .+....++-.|++++|. ++.+|...+ ..+..|-.||+++|. +..+|.. .
T Consensus 95 iP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lf-inLtDLLfLDLS~Nr-Le~LPPQ~R 170 (1255)
T KOG0444|consen 95 IPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLF-INLTDLLFLDLSNNR-LEMLPPQIR 170 (1255)
T ss_pred CCchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCc-cccCCchHH-HhhHhHhhhccccch-hhhcCHHHH
Confidence 8999999999999999997 556666 47778899999999988 888887765 566778899999884 6665543 5
Q ss_pred CCCCcceEEeecccC----ccccchhhccccccccccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCCccE
Q 035732 220 LPSSLKKLQIRRCDN----IRTLTAEEGIQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKS 295 (559)
Q Consensus 220 ~~~~L~~L~l~~~~~----l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~ 295 (559)
.+.+|+.|.+++.+- +..+|. + ++|+.
T Consensus 171 RL~~LqtL~Ls~NPL~hfQLrQLPs-----------m--------------------------------------tsL~v 201 (1255)
T KOG0444|consen 171 RLSMLQTLKLSNNPLNHFQLRQLPS-----------M--------------------------------------TSLSV 201 (1255)
T ss_pred HHhhhhhhhcCCChhhHHHHhcCcc-----------c--------------------------------------hhhhh
Confidence 566777777776431 111111 1 33444
Q ss_pred EEEcCCCC-ccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEeccccc
Q 035732 296 LYVYGCSK-VESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCK 374 (559)
Q Consensus 296 L~l~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 374 (559)
|.+++... +..+|..+..+.+|..++++.|+. ...|+.+-++++|+.|++++|. ++.+........+|++|+++.|+
T Consensus 202 Lhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L-p~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQ 279 (1255)
T KOG0444|consen 202 LHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL-PIVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRNQ 279 (1255)
T ss_pred hhcccccchhhcCCCchhhhhhhhhccccccCC-CcchHHHhhhhhhheeccCcCc-eeeeeccHHHHhhhhhhccccch
Confidence 44444332 234555666677777777777654 3356777777888888888773 34443333334478888888874
Q ss_pred cccccccccccCCCcceEEecC---CCCCCcC-CCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCCCc
Q 035732 375 RLEALPKGLHNLTSLQHLTIGG---ALPSLEE-DGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDM 450 (559)
Q Consensus 375 ~~~~~~~~l~~l~~L~~L~l~~---~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 450 (559)
+..+|+.+..+++|+.|.+.. ..+.+|. ++.+.+|+++..++|. +. ..+ ..+..|+.|+.|.++.| .+
T Consensus 280 -Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LE-lVP---EglcRC~kL~kL~L~~N--rL 351 (1255)
T KOG0444|consen 280 -LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LE-LVP---EGLCRCVKLQKLKLDHN--RL 351 (1255)
T ss_pred -hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cc-cCc---hhhhhhHHHHHhccccc--ce
Confidence 567788888888888888776 4455554 5667788888888776 33 233 36888888888888876 47
Q ss_pred eeecccccccccccccccccceeecccccccccccc
Q 035732 451 VSFPLENKRLGTALPLLASLTSLGISRFPNLERLSS 486 (559)
Q Consensus 451 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 486 (559)
..+|.. +.-++-|+.|++++++++..-|.
T Consensus 352 iTLPea-------IHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 352 ITLPEA-------IHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred eechhh-------hhhcCCcceeeccCCcCccCCCC
Confidence 777774 44568888888888888776553
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.79 E-value=2.7e-21 Score=195.93 Aligned_cols=408 Identities=19% Similarity=0.190 Sum_probs=253.2
Q ss_pred ccCCCccCccEEeecCCCceEeeccCCccCcccceeeecCCcceeecCCCCCCCCCccEEEeccccCccEEeccCchhhh
Q 035732 11 VSVSSLPAFCKLEIDGCKKVLWRSATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHDELLQ 90 (559)
Q Consensus 11 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 90 (559)
..+-.+++|+.|+++.+-.-..+.... .+.+|+++.+.+.. ++. .| ..+.
T Consensus 62 ~~it~l~~L~~ln~s~n~i~~vp~s~~-------------------------~~~~l~~lnL~~n~-l~~---lP-~~~~ 111 (1081)
T KOG0618|consen 62 IQITLLSHLRQLNLSRNYIRSVPSSCS-------------------------NMRNLQYLNLKNNR-LQS---LP-ASIS 111 (1081)
T ss_pred chhhhHHHHhhcccchhhHhhCchhhh-------------------------hhhcchhheeccch-hhc---Cc-hhHH
Confidence 345568899999999876554443211 57888888887663 322 44 5567
Q ss_pred ccCCCcEEEeccCCCccccccchH-------HH-----HHhhhhhccCceeEEecccCCCCcccCCCCCCCCccceeecc
Q 035732 91 DICSLKRLTIDSCPKLQSLVAEEE-------KD-----QQQQLCELSCRLEYLGLTSCHGLVKLPQSSFSLSSLREIEIY 158 (559)
Q Consensus 91 ~l~~L~~L~L~~c~~l~~l~~~~~-------~~-----~l~~L~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~ 158 (559)
.+.+|++|+++.+ ....+|.-.. .. .+..+.. ..++++++..+.....++..+..+.+ .|+++
T Consensus 112 ~lknl~~LdlS~N-~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~--~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr 186 (1081)
T KOG0618|consen 112 ELKNLQYLDLSFN-HFGPIPLVIEVLTAEEELAASNNEKIQRLGQ--TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLR 186 (1081)
T ss_pred hhhcccccccchh-ccCCCchhHHhhhHHHHHhhhcchhhhhhcc--ccchhhhhhhhhcccchhcchhhhhe--eeecc
Confidence 8899999999884 4554444211 00 0111101 12455555555544455555555555 57777
Q ss_pred CCCCccccCCCCCCCCccEEEecccCCCcccCcccccCCCCCccEEecCCCCCccccccccCCCCcceEEeecccCcccc
Q 035732 159 NCSSLVSFPEVALPSKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCRWLTFIAAVQLPSSLKKLQIRRCDNIRTL 238 (559)
Q Consensus 159 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 238 (559)
+|... .-.+..+.+|+.+....|..... - ...++++.|+...|. ++.......+.+|+.+++++ .++..+
T Consensus 187 ~N~~~--~~dls~~~~l~~l~c~rn~ls~l-~-----~~g~~l~~L~a~~n~-l~~~~~~p~p~nl~~~dis~-n~l~~l 256 (1081)
T KOG0618|consen 187 YNEME--VLDLSNLANLEVLHCERNQLSEL-E-----ISGPSLTALYADHNP-LTTLDVHPVPLNLQYLDISH-NNLSNL 256 (1081)
T ss_pred cchhh--hhhhhhccchhhhhhhhcccceE-E-----ecCcchheeeeccCc-ceeeccccccccceeeecch-hhhhcc
Confidence 76433 22355666777776666653221 1 122667778777775 44444445667777777777 566666
Q ss_pred chhhccccccccccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEcCCCCccchHHhhccCCCCc
Q 035732 239 TAEEGIQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKVESIAERLDNNTSLE 318 (559)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 318 (559)
|.+... .+ +++.+++.. +.++. .|... ... ++|+.|.+.+|. ++.+|...+..+.|+
T Consensus 257 p~wi~~-------~~--nle~l~~n~-N~l~~-lp~ri----------~~~-~~L~~l~~~~ne-l~yip~~le~~~sL~ 313 (1081)
T KOG0618|consen 257 PEWIGA-------CA--NLEALNANH-NRLVA-LPLRI----------SRI-TSLVSLSAAYNE-LEYIPPFLEGLKSLR 313 (1081)
T ss_pred hHHHHh-------cc--cceEecccc-hhHHh-hHHHH----------hhh-hhHHHHHhhhhh-hhhCCCcccccceee
Confidence 655544 12 367776666 55544 22211 111 456666666654 455565666677777
Q ss_pred eEEeeecCccccccccCC-CC-CccceeecccccCceecCC-CCCCCCCccEEeccccccccccccccccCCCcceEEec
Q 035732 319 KISIKRCGTLKILPSGLH-NL-RQLQEISIQICENLVSFPE-GGLPCAKLTRLEIYDCKRLEALPKGLHNLTSLQHLTIG 395 (559)
Q Consensus 319 ~L~l~~~~~~~~~~~~~~-~l-~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 395 (559)
+|++..|.+.. +|..+. -. .+|+.|..+.++. ...|. +-...+.|+.|.+.+|.......+.+.+.+.|+.|+++
T Consensus 314 tLdL~~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l-~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLs 391 (1081)
T KOG0618|consen 314 TLDLQSNNLPS-LPDNFLAVLNASLNTLNVSSNKL-STLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLS 391 (1081)
T ss_pred eeeehhccccc-cchHHHhhhhHHHHHHhhhhccc-cccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeec
Confidence 77777765432 333221 11 1244455554422 22232 22334578899999888776666778899999999999
Q ss_pred C-CCCCCcC--CCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCCCceeecccccccccccccccccce
Q 035732 396 G-ALPSLEE--DGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTALPLLASLTS 472 (559)
Q Consensus 396 ~-~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 472 (559)
+ .+..+|. ...+..|++|+|++|+ ++.... ....++.|++|...+| .+..||. +..+++|+.
T Consensus 392 yNrL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~----tva~~~~L~tL~ahsN--~l~~fPe--------~~~l~qL~~ 456 (1081)
T KOG0618|consen 392 YNRLNSFPASKLRKLEELEELNLSGNK-LTTLPD----TVANLGRLHTLRAHSN--QLLSFPE--------LAQLPQLKV 456 (1081)
T ss_pred ccccccCCHHHHhchHHhHHHhcccch-hhhhhH----HHHhhhhhHHHhhcCC--ceeechh--------hhhcCcceE
Confidence 9 8888876 4456789999999999 554432 5788999999998776 5888986 557899999
Q ss_pred eecccccccccccccc-ccCCCcCeEEecCCCC
Q 035732 473 LGISRFPNLERLSSSI-VDLQNLTLLQLWGCPK 504 (559)
Q Consensus 473 L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~c~~ 504 (559)
+|++. +.++.+.... ...++|++|+++|+.+
T Consensus 457 lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 457 LDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred Eeccc-chhhhhhhhhhCCCcccceeeccCCcc
Confidence 99998 5666543211 2238999999999754
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.54 E-value=6.9e-14 Score=146.76 Aligned_cols=254 Identities=26% Similarity=0.327 Sum_probs=153.8
Q ss_pred CceeEEecccCCCCcccCCCCCCCCccceeeccCCCCccccCCCCCCCCccEEEecccCCCcccCcccccCCCCCccEEe
Q 035732 126 CRLEYLGLTSCHGLVKLPQSSFSLSSLREIEIYNCSSLVSFPEVALPSKLKKIRISYCGALKSLPEAWMCDTNSSLEILN 205 (559)
Q Consensus 126 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 205 (559)
.+-..|+++++. +..+|..+. ++|+.|.+.+| .++.+|.+ +++|++|++++|. ++.+|.. .++|+.|+
T Consensus 201 ~~~~~LdLs~~~-LtsLP~~l~--~~L~~L~L~~N-~Lt~LP~l--p~~Lk~LdLs~N~-LtsLP~l-----p~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESG-LTTLPDCLP--AHITTLVIPDN-NLTSLPAL--PPELRTLEVSGNQ-LTSLPVL-----PPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCC-CCcCCcchh--cCCCEEEccCC-cCCCCCCC--CCCCcEEEecCCc-cCcccCc-----ccccceee
Confidence 456788998884 478887664 47899999886 45667643 5789999999886 6667643 25688999
Q ss_pred cCCCCCccccccccCCCCcceEEeecccCccccchhhccccccccccccCCccEEEEecCCCccccccCCCCCccccccc
Q 035732 206 IEHCRWLTFIAAVQLPSSLKKLQIRRCDNIRTLTAEEGIQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLE 285 (559)
Q Consensus 206 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~ 285 (559)
+.+|. +..++. .+++|+.|++.+ +.++.+|.... +|+.|++++ ++++. +|
T Consensus 269 Ls~N~-L~~Lp~--lp~~L~~L~Ls~-N~Lt~LP~~p~------------~L~~LdLS~-N~L~~-Lp------------ 318 (788)
T PRK15387 269 IFSNP-LTHLPA--LPSGLCKLWIFG-NQLTSLPVLPP------------GLQELSVSD-NQLAS-LP------------ 318 (788)
T ss_pred ccCCc-hhhhhh--chhhcCEEECcC-Ccccccccccc------------ccceeECCC-Ccccc-CC------------
Confidence 98884 555553 456788888877 45666654221 388888877 55654 22
Q ss_pred cCCCCCCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCc
Q 035732 286 VGNLPPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKL 365 (559)
Q Consensus 286 ~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 365 (559)
.+|.+|+.|++.+|.. ..+|. ...+|+.|++++|.+.. +|.. .++|+.|++++|. +..+|.. .++|
T Consensus 319 --~lp~~L~~L~Ls~N~L-~~LP~---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~-L~~LP~l---~~~L 384 (788)
T PRK15387 319 --ALPSELCKLWAYNNQL-TSLPT---LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNR-LTSLPAL---PSGL 384 (788)
T ss_pred --CCcccccccccccCcc-ccccc---cccccceEecCCCccCC-CCCC---Ccccceehhhccc-cccCccc---cccc
Confidence 1234677777777653 33332 12467777777765543 4432 2456667777663 3445532 2367
Q ss_pred cEEeccccccccccccccccCCCcceEEecC-CCCCCcCCCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEe
Q 035732 366 TRLEIYDCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEEDGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTIS 444 (559)
Q Consensus 366 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~ 444 (559)
+.|++++|. +..+|.. .++|+.|++++ .+..+|. .+.+|+.|++++|. ++. ++ ..+..+++|+.|+++
T Consensus 385 ~~LdLs~N~-Lt~LP~l---~s~L~~LdLS~N~LssIP~--l~~~L~~L~Ls~Nq-Lt~-LP---~sl~~L~~L~~LdLs 453 (788)
T PRK15387 385 KELIVSGNR-LTSLPVL---PSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQ-LTR-LP---ESLIHLSSETTVNLE 453 (788)
T ss_pred ceEEecCCc-ccCCCCc---ccCCCEEEccCCcCCCCCc--chhhhhhhhhccCc-ccc-cC---hHHhhccCCCeEECC
Confidence 777777764 3344432 24566666666 5555543 23456666666665 332 12 234455556666665
Q ss_pred ec
Q 035732 445 RC 446 (559)
Q Consensus 445 ~~ 446 (559)
+|
T Consensus 454 ~N 455 (788)
T PRK15387 454 GN 455 (788)
T ss_pred CC
Confidence 55
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.53 E-value=5.3e-14 Score=147.65 Aligned_cols=52 Identities=29% Similarity=0.307 Sum_probs=21.8
Q ss_pred CceeEEecccCCCCcccCCCCCCCCccceeeccCCCCccccCCCCCCCCccEEEecccC
Q 035732 126 CRLEYLGLTSCHGLVKLPQSSFSLSSLREIEIYNCSSLVSFPEVALPSKLKKIRISYCG 184 (559)
Q Consensus 126 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 184 (559)
++|++|++++|.. ..+|.. .++|+.|++.+| .+..+|. .+++|+.|++++|.
T Consensus 262 ~sL~~L~Ls~N~L-~~Lp~l---p~~L~~L~Ls~N-~Lt~LP~--~p~~L~~LdLS~N~ 313 (788)
T PRK15387 262 PGLLELSIFSNPL-THLPAL---PSGLCKLWIFGN-QLTSLPV--LPPGLQELSVSDNQ 313 (788)
T ss_pred cccceeeccCCch-hhhhhc---hhhcCEEECcCC-ccccccc--cccccceeECCCCc
Confidence 4455555555432 333332 233444555444 2233332 12445555555443
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.40 E-value=1.7e-14 Score=133.61 Aligned_cols=369 Identities=16% Similarity=0.206 Sum_probs=211.0
Q ss_pred CCCCCC-CccEEEeccccCccEEeccCchhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCC
Q 035732 60 LKPRIP-KLEELEIKNIKNETYIWKSHDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHG 138 (559)
Q Consensus 60 ~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~ 138 (559)
+|..+| .-+.+++..+ .++. +|++.|+.+++||+|+|++ ++++.|.+. ++..+ ++|..|-+-++..
T Consensus 61 VP~~LP~~tveirLdqN-~I~~---iP~~aF~~l~~LRrLdLS~-N~Is~I~p~----AF~GL----~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 61 VPANLPPETVEIRLDQN-QISS---IPPGAFKTLHRLRRLDLSK-NNISFIAPD----AFKGL----ASLLSLVLYGNNK 127 (498)
T ss_pred CcccCCCcceEEEeccC-Cccc---CChhhccchhhhceecccc-cchhhcChH----hhhhh----HhhhHHHhhcCCc
Confidence 455555 4677788776 5666 9999999999999999999 489988876 45555 6666666666445
Q ss_pred CcccCC-CCCCCCccceeeccCCCCccccC--CCCCCCCccEEEecccCCCcccCcccccCCCCCccEEecCCCCCccc-
Q 035732 139 LVKLPQ-SSFSLSSLREIEIYNCSSLVSFP--EVALPSKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCRWLTF- 214 (559)
Q Consensus 139 l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~- 214 (559)
+..+|. .|.++..++.|.+.-|. +..++ .+..+++|..|.+.+|. ++.++..-+ .++.+++.+.+..++.+..
T Consensus 128 I~~l~k~~F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf-~~l~~i~tlhlA~np~icdC 204 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNK-IQSICKGTF-QGLAAIKTLHLAQNPFICDC 204 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchh-hhhhccccc-cchhccchHhhhcCcccccc
Confidence 577775 46678888888887663 33333 36667777777777765 555554222 3334555555555542111
Q ss_pred -ccc-----------ccC-----CCCcceEEee-------cccCccccchhhc--------cccccccccccCCccEEEE
Q 035732 215 -IAA-----------VQL-----PSSLKKLQIR-------RCDNIRTLTAEEG--------IQCSSGRRYTSSLLEELEI 262 (559)
Q Consensus 215 -~~~-----------~~~-----~~~L~~L~l~-------~~~~l~~~~~~~~--------~~~~~~~~~~~~~L~~L~l 262 (559)
++. .+. +..+.+-.+. .| .++.++.... ....+..+++. |+.|++
T Consensus 205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c-~~esl~s~~~~~d~~d~~cP~~cf~~L~~--L~~lnl 281 (498)
T KOG4237|consen 205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLC-SLESLPSRLSSEDFPDSICPAKCFKKLPN--LRKLNL 281 (498)
T ss_pred ccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhh-hHHhHHHhhccccCcCCcChHHHHhhccc--ceEecc
Confidence 000 000 0000000000 00 0111111000 01112333444 999999
Q ss_pred ecCCCccccccCCCCCccccccccCCCCCCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccc
Q 035732 263 WDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQ 342 (559)
Q Consensus 263 ~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 342 (559)
++ ++++. +..+ +++.. ..+++|.+..|..-..-...+.++..|+.|++++|+++...|..|..+.+|.
T Consensus 282 sn-N~i~~-i~~~----aFe~~------a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~ 349 (498)
T KOG4237|consen 282 SN-NKITR-IEDG----AFEGA------AELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS 349 (498)
T ss_pred CC-Cccch-hhhh----hhcch------hhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence 99 88886 3322 33222 6899999999876555567889999999999999999888889999999999
Q ss_pred eeecccccCcee-----------------cCCCCCCCCCccEEeccccccccc---ccccc---------ccCCCcc-eE
Q 035732 343 EISIQICENLVS-----------------FPEGGLPCAKLTRLEIYDCKRLEA---LPKGL---------HNLTSLQ-HL 392 (559)
Q Consensus 343 ~L~l~~~~~~~~-----------------~~~~~~~~~~L~~L~l~~~~~~~~---~~~~l---------~~l~~L~-~L 392 (559)
+|.+-.|+.--. .|... .+..++.+.+++...-.. .|+.. ..++-+. ..
T Consensus 350 ~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq-~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVv 428 (498)
T KOG4237|consen 350 TLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQ-SPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVV 428 (498)
T ss_pred eeehccCcccCccchHHHHHHHhhCCCCCCCCCC-CCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhH
Confidence 999877653211 11111 112456666654321110 11110 1111121 11
Q ss_pred EecC-CCCCCcCCCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCCCceeecccccccccccccccccc
Q 035732 393 TIGG-ALPSLEEDGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTALPLLASLT 471 (559)
Q Consensus 393 ~l~~-~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 471 (559)
..+. .++.+|. +.+...+++++.+|. ++.+ +. ..+.+| .+++++|. +..+.... |+++++|.
T Consensus 429 RcSnk~lk~lp~-~iP~d~telyl~gn~-~~~v-p~-----~~~~~l-~~dls~n~--i~~Lsn~t------f~n~tql~ 491 (498)
T KOG4237|consen 429 RCSNKLLKLLPR-GIPVDVTELYLDGNA-ITSV-PD-----ELLRSL-LLDLSNNR--ISSLSNYT------FSNMTQLS 491 (498)
T ss_pred hhcccchhhcCC-CCCchhHHHhcccch-hccc-CH-----HHHhhh-hcccccCc--eehhhccc------ccchhhhh
Confidence 2222 3333332 334567788888887 3322 21 145566 67777652 33443332 77788888
Q ss_pred eeeccc
Q 035732 472 SLGISR 477 (559)
Q Consensus 472 ~L~l~~ 477 (559)
+|-|+.
T Consensus 492 tlilsy 497 (498)
T KOG4237|consen 492 TLILSY 497 (498)
T ss_pred eeEEec
Confidence 887765
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.36 E-value=2.2e-12 Score=136.37 Aligned_cols=117 Identities=23% Similarity=0.293 Sum_probs=59.5
Q ss_pred CCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEec
Q 035732 291 PSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEI 370 (559)
Q Consensus 291 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 370 (559)
.+|+.|++++|... .+|..+ .++|+.|++++|.+.. +|..+. ++|+.|++++|. +..+|..+ .++|+.|++
T Consensus 304 ~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~-L~~LP~~l--p~~L~~LdL 374 (754)
T PRK15370 304 SGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQ-ITVLPETL--PPTITTLDV 374 (754)
T ss_pred hhHHHHHhcCCccc-cCCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCC-CCcCChhh--cCCcCEEEC
Confidence 34555555554432 222211 2456666666654432 443332 466666666663 33444322 136666666
Q ss_pred cccccccccccccccCCCcceEEecC-CCCCCcC-----CCCCCCCceeeecCcc
Q 035732 371 YDCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEE-----DGLPTNLQLLNIEGNM 419 (559)
Q Consensus 371 ~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~-----~~~~~~L~~L~l~~~~ 419 (559)
++|. +..+|..+. ++|+.|++++ .+..+|. ....+++..|++.+|+
T Consensus 375 s~N~-Lt~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 375 SRNA-LTNLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CCCc-CCCCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 6664 334554432 2466666666 5554433 1223667778888877
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.34 E-value=2.8e-12 Score=135.59 Aligned_cols=115 Identities=25% Similarity=0.373 Sum_probs=46.2
Q ss_pred CccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEecc
Q 035732 292 SLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIY 371 (559)
Q Consensus 292 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 371 (559)
+|+.|++++|... .+|..+. .+|+.|++++|.+. .+|..+. ++|+.|++++| .++.+|.... ++|+.|+++
T Consensus 242 ~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls 312 (754)
T PRK15370 242 TIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDN-SIRTLPAHLP--SGITHLNVQ 312 (754)
T ss_pred cccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCC-ccccCcccch--hhHHHHHhc
Confidence 4555555544422 2332221 24555555544332 2333321 34555555554 2233332211 245555555
Q ss_pred ccccccccccccccCCCcceEEecC-CCCCCcCCCCCCCCceeeecCcc
Q 035732 372 DCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEEDGLPTNLQLLNIEGNM 419 (559)
Q Consensus 372 ~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~ 419 (559)
+|.. ..+|..+. ++|+.|++++ .++.++. ..+++|+.|++++|.
T Consensus 313 ~N~L-t~LP~~l~--~sL~~L~Ls~N~Lt~LP~-~l~~sL~~L~Ls~N~ 357 (754)
T PRK15370 313 SNSL-TALPETLP--PGLKTLEAGENALTSLPA-SLPPELQVLDVSKNQ 357 (754)
T ss_pred CCcc-ccCCcccc--ccceeccccCCccccCCh-hhcCcccEEECCCCC
Confidence 4432 22332221 3444444444 3433332 122455555555554
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.22 E-value=7.1e-13 Score=123.02 Aligned_cols=229 Identities=19% Similarity=0.221 Sum_probs=149.0
Q ss_pred CCCCCCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCC-CCCCCCc
Q 035732 287 GNLPPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEG-GLPCAKL 365 (559)
Q Consensus 287 ~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L 365 (559)
..+|+....+++..|.+....+..|..+++|+.|++++|.+...-|..|.++++|..|-+.++..++.+|.+ +..+..+
T Consensus 63 ~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 63 ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL 142 (498)
T ss_pred ccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence 355677788888887766666778888888888888888777777888888888888877776667777653 3344455
Q ss_pred cEEeccccccccccccccccCCCcceEEecC-CCCCCcC--CCCCCCCceeeecCcc-----------------------
Q 035732 366 TRLEIYDCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEE--DGLPTNLQLLNIEGNM----------------------- 419 (559)
Q Consensus 366 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~--~~~~~~L~~L~l~~~~----------------------- 419 (559)
+.|.+.-|+..-...+.|..+++|..|.+.+ .++.++. ...+.+++.+.+..|+
T Consensus 143 qrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsg 222 (498)
T KOG4237|consen 143 QRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSG 222 (498)
T ss_pred HHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccc
Confidence 5555554432222223444555554444443 2222221 1111222222222221
Q ss_pred -------------------------------------chhhhhhhcccccccCccccEEEEeecCCCceeeccccccccc
Q 035732 420 -------------------------------------EIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGT 462 (559)
Q Consensus 420 -------------------------------------~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 462 (559)
.+....+. ..|.++++|++|++++|. +..+...
T Consensus 223 arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~--~cf~~L~~L~~lnlsnN~--i~~i~~~------ 292 (498)
T KOG4237|consen 223 ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPA--KCFKKLPNLRKLNLSNNK--ITRIEDG------ 292 (498)
T ss_pred ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChH--HHHhhcccceEeccCCCc--cchhhhh------
Confidence 02222222 357889999999999984 5555554
Q ss_pred ccccccccceeeccccccccccccc-cccCCCcCeEEecCCCCCcccCCCCC--CCCceEEEecCChh
Q 035732 463 ALPLLASLTSLGISRFPNLERLSSS-IVDLQNLTLLQLWGCPKLKYFPKKGL--PSSLLELDIVGCPL 527 (559)
Q Consensus 463 ~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~ 527 (559)
+|.++..+++|++.+ +.++.+..+ |.++..|++|++.+ |+++.+.+..+ ..+|.+|.+-+||-
T Consensus 293 aFe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 293 AFEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYD-NQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hhcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecC-CeeEEEecccccccceeeeeehccCcc
Confidence 488899999999999 677777653 57889999999999 78999877544 46888888876653
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.21 E-value=2.4e-13 Score=111.53 Aligned_cols=159 Identities=24% Similarity=0.346 Sum_probs=110.6
Q ss_pred CCCCccceeecccccCceecCCCCCCCCCccEEeccccccccccccccccCCCcceEEecC-CCCCCcC-CCCCCCCcee
Q 035732 336 HNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEE-DGLPTNLQLL 413 (559)
Q Consensus 336 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~-~~~~~~L~~L 413 (559)
.++.+++.|.+++| .++.+|+....+.+|+.|++++|+ ++.+|..++.+++|+.|+++- .+..+|. ++.++.|+.|
T Consensus 30 f~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 30 FNMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVL 107 (264)
T ss_pred cchhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhh
Confidence 34455556666665 345555555555566666666553 556666677777777777665 4444444 5566777777
Q ss_pred eecCccchhhhhhhcccccccCccccEEEEeecCCCceeecccccccccccccccccceeeccccccccccccccccCCC
Q 035732 414 NIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSSSIVDLQN 493 (559)
Q Consensus 414 ~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 493 (559)
|+.+|..-....+ ..|..+..|+.|++++|+ .+.+|.+ +..+++|+.|.+++ +.+-.+|..++.+.+
T Consensus 108 dltynnl~e~~lp---gnff~m~tlralyl~dnd--fe~lp~d-------vg~lt~lqil~lrd-ndll~lpkeig~lt~ 174 (264)
T KOG0617|consen 108 DLTYNNLNENSLP---GNFFYMTTLRALYLGDND--FEILPPD-------VGKLTNLQILSLRD-NDLLSLPKEIGDLTR 174 (264)
T ss_pred hccccccccccCC---cchhHHHHHHHHHhcCCC--cccCChh-------hhhhcceeEEeecc-CchhhCcHHHHHHHH
Confidence 7777763333333 356678889999999874 6666664 45678999999999 667889998999999
Q ss_pred cCeEEecCCCCCcccCC
Q 035732 494 LTLLQLWGCPKLKYFPK 510 (559)
Q Consensus 494 L~~L~l~~c~~l~~l~~ 510 (559)
|++|++.+ ++++-+|+
T Consensus 175 lrelhiqg-nrl~vlpp 190 (264)
T KOG0617|consen 175 LRELHIQG-NRLTVLPP 190 (264)
T ss_pred HHHHhccc-ceeeecCh
Confidence 99999999 78888776
No 20
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.18 E-value=6.2e-13 Score=124.41 Aligned_cols=306 Identities=20% Similarity=0.273 Sum_probs=165.4
Q ss_pred cCccEEeecCCCceEeeccCCccCcccceeeecCCcceeecCCCCCCCCCccEEEeccccCccEEeccCchhhhccCCCc
Q 035732 17 PAFCKLEIDGCKKVLWRSATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHDELLQDICSLK 96 (559)
Q Consensus 17 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~ 96 (559)
..||.|.++||..+.+.... +.....|+++.|.+.+|.++++. ........++.|+
T Consensus 138 g~lk~LSlrG~r~v~~sslr----------------------t~~~~CpnIehL~l~gc~~iTd~--s~~sla~~C~~l~ 193 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLR----------------------TFASNCPNIEHLALYGCKKITDS--SLLSLARYCRKLR 193 (483)
T ss_pred cccccccccccccCCcchhh----------------------HHhhhCCchhhhhhhcceeccHH--HHHHHHHhcchhh
Confidence 45677777777766543321 11224677778888888766651 1112234578888
Q ss_pred EEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcc--cCCCCCCCCccceeeccCCCCccc--cC-CCCC
Q 035732 97 RLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVK--LPQSSFSLSSLREIEIYNCSSLVS--FP-EVAL 171 (559)
Q Consensus 97 ~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~--~~~~~~~l~~L~~L~l~~~~~~~~--~~-~~~~ 171 (559)
+|++..|..+++ ..+.++++.|++|++|++++|+-+.. +.....++..++.+..++|..... +. .-..
T Consensus 194 ~l~L~~c~~iT~-------~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~ 266 (483)
T KOG4341|consen 194 HLNLHSCSSITD-------VSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAY 266 (483)
T ss_pred hhhhcccchhHH-------HHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhcc
Confidence 888888877776 35666777778888888888765432 222334555666666666632221 10 0122
Q ss_pred CCCccEEEecccCCCcccCcccccCCCCCccEEecCCCCCccccccc---cCCCCcceEEeecccCccccchhhcccccc
Q 035732 172 PSKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCRWLTFIAAV---QLPSSLKKLQIRRCDNIRTLTAEEGIQCSS 248 (559)
Q Consensus 172 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 248 (559)
+.-+..+++.+|..+++...-..+.+...|+.+..++|..+++..-. +..++|+
T Consensus 267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~----------------------- 323 (483)
T KOG4341|consen 267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQ----------------------- 323 (483)
T ss_pred ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceE-----------------------
Confidence 33444555555544443332212223344555555555443332111 3334444
Q ss_pred ccccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEcCCCCccc--hHHhhccCCCCceEEeeecC
Q 035732 249 GRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKVES--IAERLDNNTSLEKISIKRCG 326 (559)
Q Consensus 249 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~ 326 (559)
.+.+.+|.++++ .....+ ++-...|+.+++..+..... +.+.-.+++.|+++.+++|.
T Consensus 324 ----------~l~l~~c~~fsd-~~ft~l---------~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce 383 (483)
T KOG4341|consen 324 ----------VLELSGCQQFSD-RGFTML---------GRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCE 383 (483)
T ss_pred ----------EEeccccchhhh-hhhhhh---------hcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhh
Confidence 444444444333 100000 11113566666666554332 23344577888888888877
Q ss_pred ccccc-----cccCCCCCccceeecccccCceecC-CCCCCCCCccEEeccccccccccc--cccccCCCcceEEecC
Q 035732 327 TLKIL-----PSGLHNLRQLQEISIQICENLVSFP-EGGLPCAKLTRLEIYDCKRLEALP--KGLHNLTSLQHLTIGG 396 (559)
Q Consensus 327 ~~~~~-----~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~ 396 (559)
.+.+. ...-.....|+.+.+++|+.++.-. .....+++||.+++-+|..+..-+ ..-.++|+++...+..
T Consensus 384 ~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 384 LITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFA 461 (483)
T ss_pred hhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhcc
Confidence 65532 2333557778888888887665321 234456788888888887654322 2235677776665533
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.17 E-value=2.8e-12 Score=125.60 Aligned_cols=257 Identities=21% Similarity=0.162 Sum_probs=116.5
Q ss_pred CccEEEEcCCCCcc----chHHhhccCCCCceEEeeecCccc------cccccCCCCCccceeecccccCceecCCCCCC
Q 035732 292 SLKSLYVYGCSKVE----SIAERLDNNTSLEKISIKRCGTLK------ILPSGLHNLRQLQEISIQICENLVSFPEGGLP 361 (559)
Q Consensus 292 ~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 361 (559)
+|+.+.+.++.... .++..+...+++++++++++.... .++..+..+++|++|++++|......+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 35555555554321 223334445555556555554331 12233344556666666555432211111111
Q ss_pred C---CCccEEecccccccc----ccccccccC-CCcceEEecC-CCCC-----Cc-CCCCCCCCceeeecCccchhhhhh
Q 035732 362 C---AKLTRLEIYDCKRLE----ALPKGLHNL-TSLQHLTIGG-ALPS-----LE-EDGLPTNLQLLNIEGNMEIWKSMI 426 (559)
Q Consensus 362 ~---~~L~~L~l~~~~~~~----~~~~~l~~l-~~L~~L~l~~-~l~~-----~~-~~~~~~~L~~L~l~~~~~l~~~~~ 426 (559)
+ ++|+.|++++|.... .+...+..+ ++|+.|++++ .+.. +. ....++.|++|++++|........
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 183 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR 183 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence 1 236666666654321 112233444 5666666665 3331 11 122335677777777662222111
Q ss_pred hcccccccCccccEEEEeecCCCceeecccccccccccccccccceeeccccccccc-----ccccc-ccCCCcCeEEec
Q 035732 427 ERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLER-----LSSSI-VDLQNLTLLQLW 500 (559)
Q Consensus 427 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-----~~~~~-~~~~~L~~L~l~ 500 (559)
..+..+..+++|+.|++++|...-... ..+...+..+++|+.|++++|. +.. +...+ ...+.|++|+++
T Consensus 184 ~l~~~l~~~~~L~~L~L~~n~i~~~~~----~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~ 258 (319)
T cd00116 184 ALAEGLKANCNLEVLDLNNNGLTDEGA----SALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLS 258 (319)
T ss_pred HHHHHHHhCCCCCEEeccCCccChHHH----HHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEcc
Confidence 111234445677777777763211100 1111234456777777777754 332 11111 123677888887
Q ss_pred CCCCCcc-----cCC-CCCCCCceEEEecCChhhhhhhhccCccccccc-CCCceeEEeceE
Q 035732 501 GCPKLKY-----FPK-KGLPSSLLELDIVGCPLIEEKCRKDGGQYWDLL-THIPYVLIAGKF 555 (559)
Q Consensus 501 ~c~~l~~-----l~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 555 (559)
+| .++. +.. ....++|+.+++++|..-.+.+.. -...+... .+++.+.|.+++
T Consensus 259 ~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 259 CN-DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQL-LAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CC-CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHH-HHHHHhhcCCchhhcccCCCC
Confidence 75 4431 111 011257788888777654332221 11123333 455666665543
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.16 E-value=3.6e-12 Score=124.81 Aligned_cols=214 Identities=17% Similarity=0.098 Sum_probs=113.5
Q ss_pred HhhccCCCCceEEeeecCccccccccCCCC---CccceeecccccCce----ecCCCCCCC-CCccEEecccccccc---
Q 035732 309 ERLDNNTSLEKISIKRCGTLKILPSGLHNL---RQLQEISIQICENLV----SFPEGGLPC-AKLTRLEIYDCKRLE--- 377 (559)
Q Consensus 309 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~~~----~~~~~~~~~-~~L~~L~l~~~~~~~--- 377 (559)
..+..+++|++|++++|.+....+..+..+ ++|++|++++|.... .+......+ ++|+.|++++|....
T Consensus 75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 154 (319)
T cd00116 75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC 154 (319)
T ss_pred HHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence 445556666666666665543333222222 336666666664321 111111222 467777777775431
Q ss_pred -ccccccccCCCcceEEecC-CCCC-----Cc-CCCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCCC
Q 035732 378 -ALPKGLHNLTSLQHLTIGG-ALPS-----LE-EDGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDD 449 (559)
Q Consensus 378 -~~~~~l~~l~~L~~L~l~~-~l~~-----~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 449 (559)
.++..+..+++|+.|++++ .+.. +. .....++|++|++++|..........+..+..+++|+.|++++|...
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 155 EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 2333455666777777776 4432 11 12233688888888886222211111234667788999998887432
Q ss_pred ceeecccccccccccccccccceeeccccccc----cccccccccCCCcCeEEecCCCCCcccCC-------CCCCCCce
Q 035732 450 MVSFPLENKRLGTALPLLASLTSLGISRFPNL----ERLSSSIVDLQNLTLLQLWGCPKLKYFPK-------KGLPSSLL 518 (559)
Q Consensus 450 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l----~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-------~~~~~~L~ 518 (559)
-..+..-.. ......+.|+.|++++|..- ..+...+..+++|+.+++++ +.+..-+. ...-+.|+
T Consensus 235 ~~~~~~l~~---~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~-N~l~~~~~~~~~~~~~~~~~~~~ 310 (319)
T cd00116 235 DAGAAALAS---ALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRG-NKFGEEGAQLLAESLLEPGNELE 310 (319)
T ss_pred hHHHHHHHH---HHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCC-CCCcHHHHHHHHHHHhhcCCchh
Confidence 111111000 00112368899999986532 22333445568899999998 45654322 11125788
Q ss_pred EEEecCCh
Q 035732 519 ELDIVGCP 526 (559)
Q Consensus 519 ~L~l~~c~ 526 (559)
++++.++|
T Consensus 311 ~~~~~~~~ 318 (319)
T cd00116 311 SLWVKDDS 318 (319)
T ss_pred hcccCCCC
Confidence 88887764
No 23
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.08 E-value=4.5e-12 Score=118.71 Aligned_cols=282 Identities=18% Similarity=0.243 Sum_probs=164.6
Q ss_pred CCccEEEeccccCccEEeccCc-hhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccC
Q 035732 65 PKLEELEIKNIKNETYIWKSHD-ELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLP 143 (559)
Q Consensus 65 ~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~ 143 (559)
.-|+.|++.+|....+ .+. .+...+|++++|++.+|..+++ ..+.+++..|++|++|++..|..++...
T Consensus 138 g~lk~LSlrG~r~v~~---sslrt~~~~CpnIehL~l~gc~~iTd-------~s~~sla~~C~~l~~l~L~~c~~iT~~~ 207 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGD---SSLRTFASNCPNIEHLALYGCKKITD-------SSLLSLARYCRKLRHLNLHSCSSITDVS 207 (483)
T ss_pred cccccccccccccCCc---chhhHHhhhCCchhhhhhhcceeccH-------HHHHHHHHhcchhhhhhhcccchhHHHH
Confidence 4567777777766554 222 2334577777777777765554 3455555556777777777765544221
Q ss_pred --CCCCCCCccceeeccCCCCccccCCCCCCCCccEEEecccCCCcccCcccccCCCCCccEEecCCCCCccc--ccc-c
Q 035732 144 --QSSFSLSSLREIEIYNCSSLVSFPEVALPSKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCRWLTF--IAA-V 218 (559)
Q Consensus 144 --~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~-~ 218 (559)
.....+++|++|.++.| +.+..-...-...+...++.+...+|..... +.. .
T Consensus 208 Lk~la~gC~kL~~lNlSwc-----------------------~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~ 264 (483)
T KOG4341|consen 208 LKYLAEGCRKLKYLNLSWC-----------------------PQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAA 264 (483)
T ss_pred HHHHHHhhhhHHHhhhccC-----------------------chhhcCcchHHhccchhhhhhhhcccccccHHHHHHHh
Confidence 11223555555555555 4333221111123334455555555543221 111 1
Q ss_pred cCCCCcceEEeecccCccccchhhccccccccccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEE
Q 035732 219 QLPSSLKKLQIRRCDNIRTLTAEEGIQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYV 298 (559)
Q Consensus 219 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l 298 (559)
....-+.++++.+|..+++...+..... . ..++.|+.++|+.+.+ .+. ..+ +.-..+|+.+.+
T Consensus 265 ~~~~~i~~lnl~~c~~lTD~~~~~i~~~-----c--~~lq~l~~s~~t~~~d-~~l-------~aL--g~~~~~L~~l~l 327 (483)
T KOG4341|consen 265 AYCLEILKLNLQHCNQLTDEDLWLIACG-----C--HALQVLCYSSCTDITD-EVL-------WAL--GQHCHNLQVLEL 327 (483)
T ss_pred ccChHhhccchhhhccccchHHHHHhhh-----h--hHhhhhcccCCCCCch-HHH-------HHH--hcCCCceEEEec
Confidence 3344566666667766654442211100 0 1278888888877665 221 111 222268999999
Q ss_pred cCCCCccch--HHhhccCCCCceEEeeecCcccc--ccccCCCCCccceeecccccCceec-----CCCCCCCCCccEEe
Q 035732 299 YGCSKVESI--AERLDNNTSLEKISIKRCGTLKI--LPSGLHNLRQLQEISIQICENLVSF-----PEGGLPCAKLTRLE 369 (559)
Q Consensus 299 ~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~ 369 (559)
..|...... ...-.+++.|+.+++..+....+ +...-.+++.|+.+.+++|..++.- .........|+.+.
T Consensus 328 ~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lE 407 (483)
T KOG4341|consen 328 SGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLE 407 (483)
T ss_pred cccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceee
Confidence 999876543 23346789999999999876542 3344467999999999999766543 22233445799999
Q ss_pred cccccccccc-ccccccCCCcceEEecC
Q 035732 370 IYDCKRLEAL-PKGLHNLTSLQHLTIGG 396 (559)
Q Consensus 370 l~~~~~~~~~-~~~l~~l~~L~~L~l~~ 396 (559)
+++|+.+.+- -..+..+++|+.+++-+
T Consensus 408 L~n~p~i~d~~Le~l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 408 LDNCPLITDATLEHLSICRNLERIELID 435 (483)
T ss_pred ecCCCCchHHHHHHHhhCcccceeeeec
Confidence 9999876543 24567888999988866
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.99 E-value=1.9e-11 Score=100.52 Aligned_cols=154 Identities=27% Similarity=0.385 Sum_probs=126.8
Q ss_pred CCCCCCCccEEeccccccccccccccccCCCcceEEecC-CCCCCcC-CCCCCCCceeeecCccchhhhhhhcccccccC
Q 035732 358 GGLPCAKLTRLEIYDCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEE-DGLPTNLQLLNIEGNMEIWKSMIERGRGFHRF 435 (559)
Q Consensus 358 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l 435 (559)
+...+..++.|.+++|+ +..+|..+..+.+|+.|+++. .++.+|. .+.++.|+.|++.-|+ +. .. +..|.++
T Consensus 28 gLf~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~-~l---prgfgs~ 101 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LN-IL---PRGFGSF 101 (264)
T ss_pred cccchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hh-cC---ccccCCC
Confidence 34455688999999985 667888999999999999999 8888776 7788999999999877 32 22 2579999
Q ss_pred ccccEEEEeecCCCceeecccccccccccccccccceeeccccccccccccccccCCCcCeEEecCCCCCcccCCC-CCC
Q 035732 436 SSLRRLTISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSSSIVDLQNLTLLQLWGCPKLKYFPKK-GLP 514 (559)
Q Consensus 436 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~ 514 (559)
|.|+.|++.+|+.....+|. .|-.++.|+-|++++ +..+.+|..++.+.+|+.|.+.+ +.+-++|.. +-+
T Consensus 102 p~levldltynnl~e~~lpg-------nff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrd-ndll~lpkeig~l 172 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPG-------NFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRD-NDLLSLPKEIGDL 172 (264)
T ss_pred chhhhhhccccccccccCCc-------chhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeecc-CchhhCcHHHHHH
Confidence 99999999999877777776 366789999999999 67899999999999999999999 667788873 446
Q ss_pred CCceEEEecCCh
Q 035732 515 SSLLELDIVGCP 526 (559)
Q Consensus 515 ~~L~~L~l~~c~ 526 (559)
..|++|++.++.
T Consensus 173 t~lrelhiqgnr 184 (264)
T KOG0617|consen 173 TRLRELHIQGNR 184 (264)
T ss_pred HHHHHHhcccce
Confidence 788888888873
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.93 E-value=2.3e-09 Score=115.69 Aligned_cols=106 Identities=22% Similarity=0.276 Sum_probs=66.4
Q ss_pred CCCccEEEeccccC-ccEEeccCchhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCccc
Q 035732 64 IPKLEELEIKNIKN-ETYIWKSHDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKL 142 (559)
Q Consensus 64 l~~L~~L~l~~~~~-~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~ 142 (559)
.++|++|-+.+... +.. ++.++|..++.|++||+++|..+..+|. .++.| -+|++|+++++.. ..+
T Consensus 544 ~~~L~tLll~~n~~~l~~---is~~ff~~m~~LrVLDLs~~~~l~~LP~-----~I~~L----i~LryL~L~~t~I-~~L 610 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLE---ISGEFFRSLPLLRVLDLSGNSSLSKLPS-----SIGEL----VHLRYLDLSDTGI-SHL 610 (889)
T ss_pred CCccceEEEeecchhhhh---cCHHHHhhCcceEEEECCCCCccCcCCh-----HHhhh----hhhhcccccCCCc-ccc
Confidence 44666666665532 333 5555566677777777777666666654 36666 6777777777543 567
Q ss_pred CCCCCCCCccceeeccCCCCccccCCCC-CCCCccEEEecc
Q 035732 143 PQSSFSLSSLREIEIYNCSSLVSFPEVA-LPSKLKKIRISY 182 (559)
Q Consensus 143 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~ 182 (559)
|.++.++..|.+|++..+..+..++... .+.+||+|.+..
T Consensus 611 P~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 611 PSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred chHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 7777777777777776665555555433 366777776654
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.76 E-value=2.2e-09 Score=115.82 Aligned_cols=228 Identities=25% Similarity=0.286 Sum_probs=151.7
Q ss_pred CCccEEEEcCCC--CccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEE
Q 035732 291 PSLKSLYVYGCS--KVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRL 368 (559)
Q Consensus 291 ~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 368 (559)
+.|++|-+..+. ........+..++.|++||+++|.....+|..++.+-+|++|++++. .+..+|.++..+..|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhhee
Confidence 368888887765 23333445788999999999998888888999999999999999986 556888888888889999
Q ss_pred eccccccccccccccccCCCcceEEecC-CC----CCCcCCCCCCCCceeeecCccchhhhhhhcccccccCcccc----
Q 035732 369 EIYDCKRLEALPKGLHNLTSLQHLTIGG-AL----PSLEEDGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLR---- 439 (559)
Q Consensus 369 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l----~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~---- 439 (559)
++..+.....+|.....+++|++|.+.. .. ..+.....+.+|+.+....... .... .+...+.|.
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e----~l~~~~~L~~~~~ 697 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLE----DLLGMTRLRSLLQ 697 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHh----hhhhhHHHHHHhH
Confidence 9988877777766667789999998876 21 1122234455566655544331 0111 122333333
Q ss_pred EEEEeecCCCceeecccccccccccccccccceeeccccccccccccc-----ccc-CCCcCeEEecCCCCCcccCCCCC
Q 035732 440 RLTISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSSS-----IVD-LQNLTLLQLWGCPKLKYFPKKGL 513 (559)
Q Consensus 440 ~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-----~~~-~~~L~~L~l~~c~~l~~l~~~~~ 513 (559)
.+.+.++ ....... .+..+.+|+.|.+.+|...+..... ... |+++..+.+.+|..++.+....+
T Consensus 698 ~l~~~~~--~~~~~~~-------~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f 768 (889)
T KOG4658|consen 698 SLSIEGC--SKRTLIS-------SLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLF 768 (889)
T ss_pred hhhhccc--ccceeec-------ccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhc
Confidence 2222221 1111111 2556788888888888765432211 122 66788888888888888777777
Q ss_pred CCCceEEEecCChhhhhhhhc
Q 035732 514 PSSLLELDIVGCPLIEEKCRK 534 (559)
Q Consensus 514 ~~~L~~L~l~~c~~l~~~~~~ 534 (559)
+++|+.|.+.+|+.+++++..
T Consensus 769 ~~~L~~l~l~~~~~~e~~i~~ 789 (889)
T KOG4658|consen 769 APHLTSLSLVSCRLLEDIIPK 789 (889)
T ss_pred cCcccEEEEecccccccCCCH
Confidence 889999999999888877654
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=2.2e-09 Score=101.53 Aligned_cols=156 Identities=24% Similarity=0.260 Sum_probs=80.0
Q ss_pred CCCCccEEEeccccCccEEeccCchhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCccc
Q 035732 63 RIPKLEELEIKNIKNETYIWKSHDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKL 142 (559)
Q Consensus 63 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~ 142 (559)
.+|+|+.|+++.+. +...|+. ..-..+++|+.|.|+.| +++. +.+..+...||+|+.|++.+|.++..-
T Consensus 170 qLp~Le~LNls~Nr-l~~~~~s--~~~~~l~~lK~L~l~~C-Gls~-------k~V~~~~~~fPsl~~L~L~~N~~~~~~ 238 (505)
T KOG3207|consen 170 QLPSLENLNLSSNR-LSNFISS--NTTLLLSHLKQLVLNSC-GLSW-------KDVQWILLTFPSLEVLYLEANEIILIK 238 (505)
T ss_pred hcccchhccccccc-ccCCccc--cchhhhhhhheEEeccC-CCCH-------HHHHHHHHhCCcHHHhhhhccccccee
Confidence 46777777776552 2221111 11235677777777777 5553 445666666677777777776432222
Q ss_pred CCCCCCCCccceeeccCCCCcccc--CCCCCCCCccEEEecccCCCcccCcccc-----cCCCCCccEEecCCCCC--cc
Q 035732 143 PQSSFSLSSLREIEIYNCSSLVSF--PEVALPSKLKKIRISYCGALKSLPEAWM-----CDTNSSLEILNIEHCRW--LT 213 (559)
Q Consensus 143 ~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~--~~ 213 (559)
.....-+..|++|+|++|..+..- +..+.++.|+.|+++.|. +.++...-. ....++|+.|++..|+. ..
T Consensus 239 ~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~ 317 (505)
T KOG3207|consen 239 ATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR 317 (505)
T ss_pred cchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCcccccc
Confidence 223344666777777776443321 345666777777776665 332211100 01125666666666642 22
Q ss_pred ccccccCCCCcceEEee
Q 035732 214 FIAAVQLPSSLKKLQIR 230 (559)
Q Consensus 214 ~~~~~~~~~~L~~L~l~ 230 (559)
++.....+++|+.|.+.
T Consensus 318 sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 318 SLNHLRTLENLKHLRIT 334 (505)
T ss_pred ccchhhccchhhhhhcc
Confidence 22222334455555433
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.55 E-value=3.1e-08 Score=89.28 Aligned_cols=130 Identities=22% Similarity=0.317 Sum_probs=99.4
Q ss_pred CCccEEeccccccccccccccccCCCcceEEecC-CCCCCcCCCCCCCCceeeecCccchhhhhhhcccccccCccccEE
Q 035732 363 AKLTRLEIYDCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEEDGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRL 441 (559)
Q Consensus 363 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L 441 (559)
..|+.+++++|. ++.+.+...-+|.++.|++++ .+..+.....+++|+.||+++|. ++.+.. .-.++.|+++|
T Consensus 284 q~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~-Ls~~~G----wh~KLGNIKtL 357 (490)
T KOG1259|consen 284 QELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNL-LAECVG----WHLKLGNIKTL 357 (490)
T ss_pred hhhhhccccccc-hhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccch-hHhhhh----hHhhhcCEeee
Confidence 368899999985 566677788889999999998 88888778888999999999998 443321 23478899999
Q ss_pred EEeecCCCceeecccccccccccccccccceeecccccccccccc--ccccCCCcCeEEecCCCCCcccCC
Q 035732 442 TISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSS--SIVDLQNLTLLQLWGCPKLKYFPK 510 (559)
Q Consensus 442 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~L~l~~c~~l~~l~~ 510 (559)
.+++| .++.+.. +..+.+|..|++++ ++++.+.. +++++|.|+++.+.++| +..+++
T Consensus 358 ~La~N--~iE~LSG--------L~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~vd 416 (490)
T KOG1259|consen 358 KLAQN--KIETLSG--------LRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNP-LAGSVD 416 (490)
T ss_pred ehhhh--hHhhhhh--------hHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCC-ccccch
Confidence 99987 3555544 55678899999999 56666543 67889999999999955 554443
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.51 E-value=5.9e-08 Score=83.74 Aligned_cols=105 Identities=26% Similarity=0.388 Sum_probs=27.3
Q ss_pred ccCCCcceEEecC-CCCCCcCCC-CCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCCCceeecccccccc
Q 035732 384 HNLTSLQHLTIGG-ALPSLEEDG-LPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLG 461 (559)
Q Consensus 384 ~~l~~L~~L~l~~-~l~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 461 (559)
.+..++++|++.+ .|+.++..+ .+.+|+.|++++|. ++.. ..+..+++|++|++++|. +..+...
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~-I~~l-----~~l~~L~~L~~L~L~~N~--I~~i~~~----- 82 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQ-ITKL-----EGLPGLPRLKTLDLSNNR--ISSISEG----- 82 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS---S-------TT----TT--EEE--SS-----S-CHH-----
T ss_pred ccccccccccccccccccccchhhhhcCCCEEECCCCC-Cccc-----cCccChhhhhhcccCCCC--CCccccc-----
Confidence 3444667777777 666666554 35677777777776 4322 235566667777776663 2222210
Q ss_pred cccccccccceeecccccccccccc--ccccCCCcCeEEecCCC
Q 035732 462 TALPLLASLTSLGISRFPNLERLSS--SIVDLQNLTLLQLWGCP 503 (559)
Q Consensus 462 ~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~L~l~~c~ 503 (559)
....+++|++|++++ +.+..+.. .+..+++|+.|++.++|
T Consensus 83 -l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 83 -LDKNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp -HHHH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred -hHHhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCc
Confidence 012346666666666 44444322 23456666666666644
No 30
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.50 E-value=7.9e-07 Score=86.27 Aligned_cols=92 Identities=32% Similarity=0.613 Sum_probs=56.2
Q ss_pred hccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEeccccccccccccccccCCCcc
Q 035732 311 LDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALPKGLHNLTSLQ 390 (559)
Q Consensus 311 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 390 (559)
+..+.+++.|++++|. +..+|. + .++|+.|.+++|..++.+|... +++|+.|++++|..+..+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c~-L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCD-IESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCC-CcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence 4456888899998883 444452 1 2358888888888777776533 24788888888866655553 355
Q ss_pred eEEecC-CCCCCcCCCCCCCCceeeec
Q 035732 391 HLTIGG-ALPSLEEDGLPTNLQLLNIE 416 (559)
Q Consensus 391 ~L~l~~-~l~~~~~~~~~~~L~~L~l~ 416 (559)
.|++++ ....+ ...+++|++|.+.
T Consensus 116 ~L~L~~n~~~~L--~~LPssLk~L~I~ 140 (426)
T PRK15386 116 SLEIKGSATDSI--KNVPNGLTSLSIN 140 (426)
T ss_pred eEEeCCCCCccc--ccCcchHhheecc
Confidence 555544 22222 1233455555553
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=2.8e-08 Score=94.29 Aligned_cols=107 Identities=20% Similarity=0.184 Sum_probs=59.0
Q ss_pred CCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCC-Cceeecccccccccccccccccceeecccccccccc
Q 035732 406 LPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDD-DMVSFPLENKRLGTALPLLASLTSLGISRFPNLERL 484 (559)
Q Consensus 406 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 484 (559)
.++.|+.|.+++|.....-+. +.+..+|+|+.|++.+|.. ....++. ..+..|++|+|++++.+ +.
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~---~~~~~fPsl~~L~L~~N~~~~~~~~~~---------~i~~~L~~LdLs~N~li-~~ 261 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQ---WILLTFPSLEVLYLEANEIILIKATST---------KILQTLQELDLSNNNLI-DF 261 (505)
T ss_pred hhhhhheEEeccCCCCHHHHH---HHHHhCCcHHHhhhhcccccceecchh---------hhhhHHhhccccCCccc-cc
Confidence 446777777777763222221 3566777777777777631 1222221 22367777777774433 33
Q ss_pred c--cccccCCCcCeEEecCCCCCccc--CCC------CCCCCceEEEecCCh
Q 035732 485 S--SSIVDLQNLTLLQLWGCPKLKYF--PKK------GLPSSLLELDIVGCP 526 (559)
Q Consensus 485 ~--~~~~~~~~L~~L~l~~c~~l~~l--~~~------~~~~~L~~L~l~~c~ 526 (559)
+ .....++.|+.|.++.| .+.++ |+. ...++|+.|++..|+
T Consensus 262 ~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 262 DQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred ccccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCc
Confidence 3 22356777777777763 55553 222 234677777776654
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.50 E-value=5.1e-08 Score=84.11 Aligned_cols=127 Identities=20% Similarity=0.291 Sum_probs=41.0
Q ss_pred cCCCCceEEeeecCccccccccCC-CCCccceeecccccCceecCCCCCCCCCccEEecccccccccccccc-ccCCCcc
Q 035732 313 NNTSLEKISIKRCGTLKILPSGLH-NLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALPKGL-HNLTSLQ 390 (559)
Q Consensus 313 ~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~ 390 (559)
+..++++|++.+|.+.. .+.+. .+.+|+.|++++|. ++.+. ++..++.|+.|++++|.. +.+.+.+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~-I~~l~-~l~~L~~L~~L~L~~N~I-~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQ-ITKLE-GLPGLPRLKTLDLSNNRI-SSISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred ccccccccccccccccc--ccchhhhhcCCCEEECCCCC-Ccccc-CccChhhhhhcccCCCCC-CccccchHHhCCcCC
Confidence 33455666666665443 12333 35666677776663 23333 233445677777777653 3343333 3567777
Q ss_pred eEEecC-CCCC---CcCCCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEee
Q 035732 391 HLTIGG-ALPS---LEEDGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISR 445 (559)
Q Consensus 391 ~L~l~~-~l~~---~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~ 445 (559)
+|++++ .+.. +.....+++|+.|++.+|+ +..........+..+|+|+.||-..
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEE
Confidence 777776 4433 3344567888888888887 3322222224466777777776444
No 33
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=3.1e-09 Score=95.58 Aligned_cols=87 Identities=13% Similarity=0.198 Sum_probs=60.8
Q ss_pred CCccEEEEcCCCCcc-chHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCC--CCCCCCCccE
Q 035732 291 PSLKSLYVYGCSKVE-SIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPE--GGLPCAKLTR 367 (559)
Q Consensus 291 ~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~ 367 (559)
+.++++++++..... .+...+..|.+|+.|.+.++...+.+...+..-.+|+.|+++.|..+++... .+..|..|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 457888887754432 3345667888888888888887776766777778888888888877665432 2445667888
Q ss_pred Eecccccccc
Q 035732 368 LEIYDCKRLE 377 (559)
Q Consensus 368 L~l~~~~~~~ 377 (559)
|++++|....
T Consensus 265 LNlsWc~l~~ 274 (419)
T KOG2120|consen 265 LNLSWCFLFT 274 (419)
T ss_pred cCchHhhccc
Confidence 8888876544
No 34
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.45 E-value=1.3e-06 Score=84.89 Aligned_cols=117 Identities=25% Similarity=0.470 Sum_probs=60.7
Q ss_pred ccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccCCCCCCCCccceeeccCCCCccccCCCC
Q 035732 91 DICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLPQSSFSLSSLREIEIYNCSSLVSFPEVA 170 (559)
Q Consensus 91 ~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 170 (559)
.++++++|++++| .++.+|. .+++|+.|.+++|..+..+|..+ .++|++|++.+|..+..+|
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~------------LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP--- 111 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV------------LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP--- 111 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC------------CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc---
Confidence 3566777777766 5655542 12456777777666666666543 2466677776665544443
Q ss_pred CCCCccEEEecccC--CCcccCcccccCCCCCccEEecCCCCCccccc-cccCCCCcceEEeecccCc
Q 035732 171 LPSKLKKIRISYCG--ALKSLPEAWMCDTNSSLEILNIEHCRWLTFIA-AVQLPSSLKKLQIRRCDNI 235 (559)
Q Consensus 171 ~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l 235 (559)
.+|+.|++.++. .+..+|. +|+.|.+.++....... ....+++|+.|.+.+|..+
T Consensus 112 --~sLe~L~L~~n~~~~L~~LPs--------sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 112 --ESVRSLEIKGSATDSIKNVPN--------GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI 169 (426)
T ss_pred --cccceEEeCCCCCcccccCcc--------hHhheeccccccccccccccccCCcccEEEecCCCcc
Confidence 356666665432 1333332 25666654322111100 0124456666666665544
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.28 E-value=9.6e-08 Score=88.20 Aligned_cols=84 Identities=20% Similarity=0.185 Sum_probs=49.0
Q ss_pred CCccEEEEcCCCCccc----hHHhhccCCCCceEEeeecCcc---cccc-------ccCCCCCccceeecccccCceecC
Q 035732 291 PSLKSLYVYGCSKVES----IAERLDNNTSLEKISIKRCGTL---KILP-------SGLHNLRQLQEISIQICENLVSFP 356 (559)
Q Consensus 291 ~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~---~~~~-------~~~~~l~~L~~L~l~~~~~~~~~~ 356 (559)
.+++++++++|..... +...+.+.++|+..++++-.-- ..+| ..+...++|+++++++|..-...+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 5788888888776533 3345566677777777653211 1222 334456678888888774322221
Q ss_pred C----CCCCCCCccEEeccccc
Q 035732 357 E----GGLPCAKLTRLEIYDCK 374 (559)
Q Consensus 357 ~----~~~~~~~L~~L~l~~~~ 374 (559)
. ....+..|+.|.+.+|.
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCC
Confidence 1 12335577777777775
No 36
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=7.9e-08 Score=86.72 Aligned_cols=183 Identities=19% Similarity=0.211 Sum_probs=84.4
Q ss_pred ceeEEecccCCCCc-ccCCCCCCCCccceeeccCCCCccccC-CCCCCCCccEEEecccCCCcccCcccccCCCCCccEE
Q 035732 127 RLEYLGLTSCHGLV-KLPQSSFSLSSLREIEIYNCSSLVSFP-EVALPSKLKKIRISYCGALKSLPEAWMCDTNSSLEIL 204 (559)
Q Consensus 127 ~L~~L~l~~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 204 (559)
.|+++|++...+.. .+...+..+.+|+.|.+.++..-..+- .+..-.+|+.|+++.|.+++......+...+..|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 45555555532211 222223345555555555442111111 1334455566666665555554444333444556666
Q ss_pred ecCCCCCccccccc---cCCCCcceEEeecccCccccchhhccccccccccccCCccEEEEecCCCccccccCCCCCccc
Q 035732 205 NIEHCRWLTFIAAV---QLPSSLKKLQIRRCDNIRTLTAEEGIQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATL 281 (559)
Q Consensus 205 ~l~~~~~~~~~~~~---~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 281 (559)
++++|...+..... ...++|+.|++++|...-.... ...-.+.. |++.+||+++|..++. .....+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh----~~tL~~rc--p~l~~LDLSD~v~l~~-----~~~~~~ 334 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSH----LSTLVRRC--PNLVHLDLSDSVMLKN-----DCFQEF 334 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhH----HHHHHHhC--CceeeeccccccccCc-----hHHHHH
Confidence 66666433322111 3345666666666542211000 00000111 2377777777655552 111111
Q ss_pred cccccCCCCCCccEEEEcCCCCccch-HHhhccCCCCceEEeeecC
Q 035732 282 ESLEVGNLPPSLKSLYVYGCSKVESI-AERLDNNTSLEKISIKRCG 326 (559)
Q Consensus 282 ~~l~~~~l~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~ 326 (559)
..+ +.|++|.++.|..+..- .-.+.+.++|.+|++.++-
T Consensus 335 -----~kf-~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 335 -----FKF-NYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred -----Hhc-chheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 233 46777777777643211 1234567778888777763
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.22 E-value=3.9e-07 Score=82.35 Aligned_cols=123 Identities=22% Similarity=0.306 Sum_probs=60.2
Q ss_pred CCcceEEecC-CCCCCcC-CCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCCCceeeccccccccccc
Q 035732 387 TSLQHLTIGG-ALPSLEE-DGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTAL 464 (559)
Q Consensus 387 ~~L~~L~l~~-~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 464 (559)
..|+++++++ .|+.+.. ....|.++.|+++.|. +..+ ..++.+++|+.|++++|. +..+. + .-
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v-----~nLa~L~~L~~LDLS~N~--Ls~~~-G------wh 348 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTV-----QNLAELPQLQLLDLSGNL--LAECV-G------WH 348 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccc-eeee-----hhhhhcccceEeecccch--hHhhh-h------hH
Confidence 4556666666 5555433 2344566666666665 2211 124555666666666652 11111 1 12
Q ss_pred ccccccceeeccccccccccccccccCCCcCeEEecCCCCCcccCC---CCCCCCceEEEecCChh
Q 035732 465 PLLASLTSLGISRFPNLERLSSSIVDLQNLTLLQLWGCPKLKYFPK---KGLPSSLLELDIVGCPL 527 (559)
Q Consensus 465 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~---~~~~~~L~~L~l~~c~~ 527 (559)
..+.++++|.+++ +.++.+. ++..+-+|..|++.+ |++..+.+ -+-+|-|+.+.+.+||.
T Consensus 349 ~KLGNIKtL~La~-N~iE~LS-GL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQ-NKIETLS-GLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhcCEeeeehhh-hhHhhhh-hhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCCc
Confidence 2345556666666 4444443 233445566666666 45554433 23345566666666553
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.21 E-value=1.3e-06 Score=88.04 Aligned_cols=173 Identities=25% Similarity=0.353 Sum_probs=110.1
Q ss_pred hccCCCCceEEeeecCccccccccCCCCC-ccceeecccccCceecCCCCCCCCCccEEeccccccccccccccccCCCc
Q 035732 311 LDNNTSLEKISIKRCGTLKILPSGLHNLR-QLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALPKGLHNLTSL 389 (559)
Q Consensus 311 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 389 (559)
+...+.++.|++.++.... ++.....++ +|+.|++++|. +..++.....+++|+.|++++|+ +..+|......++|
T Consensus 112 ~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L 188 (394)
T COG4886 112 LLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNL 188 (394)
T ss_pred hhcccceeEEecCCccccc-Cccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhh
Confidence 3344667777777665443 344444453 77788887763 34444445556678888888775 44555555577788
Q ss_pred ceEEecC-CCCCCcCC-CCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCCCceeecccccccccccccc
Q 035732 390 QHLTIGG-ALPSLEED-GLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTALPLL 467 (559)
Q Consensus 390 ~~L~l~~-~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l 467 (559)
+.|++++ .+..++.. ..+..|+++.+++|..+... ..+..+.++..+.+.++. ...++. .+..+
T Consensus 189 ~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~-----~~~~~~~~l~~l~l~~n~--~~~~~~-------~~~~l 254 (394)
T COG4886 189 NNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELL-----SSLSNLKNLSGLELSNNK--LEDLPE-------SIGNL 254 (394)
T ss_pred hheeccCCccccCchhhhhhhhhhhhhhcCCcceecc-----hhhhhcccccccccCCce--eeeccc-------hhccc
Confidence 8888888 77777664 35566888888888523321 235666777777766542 222222 24455
Q ss_pred cccceeeccccccccccccccccCCCcCeEEecCC
Q 035732 468 ASLTSLGISRFPNLERLSSSIVDLQNLTLLQLWGC 502 (559)
Q Consensus 468 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c 502 (559)
++++.|++++ +.+..++. +..+.+++.|++++.
T Consensus 255 ~~l~~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 255 SNLETLDLSN-NQISSISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred cccceecccc-cccccccc-ccccCccCEEeccCc
Confidence 7788888888 56777766 677788888888883
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.20 E-value=5.5e-08 Score=89.79 Aligned_cols=86 Identities=19% Similarity=0.218 Sum_probs=54.0
Q ss_pred CCccEEEEcCCCCc----cchHHhhccCCCCceEEeeecCccc----cccccCCCCCccceeecccccCcee----cCC-
Q 035732 291 PSLKSLYVYGCSKV----ESIAERLDNNTSLEKISIKRCGTLK----ILPSGLHNLRQLQEISIQICENLVS----FPE- 357 (559)
Q Consensus 291 ~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~- 357 (559)
+.|+.+.+..|.+. ..+...+..+++|++|++.+|.+.. .+...++.+++|+.|++++|-.-.. +-.
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a 264 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA 264 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence 46777777666543 2345677888888888888887764 3455667778888888888742211 100
Q ss_pred CCCCCCCccEEeccccccc
Q 035732 358 GGLPCAKLTRLEIYDCKRL 376 (559)
Q Consensus 358 ~~~~~~~L~~L~l~~~~~~ 376 (559)
.-...|+|+.+.+.+|.+.
T Consensus 265 l~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 265 LKESAPSLEVLELAGNEIT 283 (382)
T ss_pred HhccCCCCceeccCcchhH
Confidence 0111347777777777543
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.19 E-value=9.8e-08 Score=93.58 Aligned_cols=189 Identities=22% Similarity=0.290 Sum_probs=123.1
Q ss_pred ccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEeccc
Q 035732 293 LKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYD 372 (559)
Q Consensus 293 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 372 (559)
....+++.|. ...+|..+..+..|+.+.++.|. ...+|..+.++..|+.++++.| .+..+|.....+ .|+.|-+++
T Consensus 77 t~~aDlsrNR-~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~l-pLkvli~sN 152 (722)
T KOG0532|consen 77 TVFADLSRNR-FSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDL-PLKVLIVSN 152 (722)
T ss_pred hhhhhccccc-cccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccc-hhhcCChhhhcC-cceeEEEec
Confidence 3444555543 45567777788888888888764 4557888889999999999987 456777777777 588888887
Q ss_pred cccccccccccccCCCcceEEecC-CCCCCcC-CCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCCCc
Q 035732 373 CKRLEALPKGLHNLTSLQHLTIGG-ALPSLEE-DGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDM 450 (559)
Q Consensus 373 ~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 450 (559)
|+ ++.+|..++.++.|..|+.+. ++..++. .+.+.+|+.|.+..|+ +.+...+ +..+ .|..|++++| .+
T Consensus 153 Nk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E----l~~L-pLi~lDfScN--ki 223 (722)
T KOG0532|consen 153 NK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE----LCSL-PLIRLDFSCN--KI 223 (722)
T ss_pred Cc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH----HhCC-ceeeeecccC--ce
Confidence 74 678888888888888888877 6666544 5666777777777777 3333332 3333 3666666665 35
Q ss_pred eeecccccccccccccccccceeecccccccccccccc---ccCCCcCeEEecCC
Q 035732 451 VSFPLENKRLGTALPLLASLTSLGISRFPNLERLSSSI---VDLQNLTLLQLWGC 502 (559)
Q Consensus 451 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~---~~~~~L~~L~l~~c 502 (559)
..+|. .|..+..|++|-+.+++ ++.-|..+ +...-.|.|+..-|
T Consensus 224 s~iPv-------~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 224 SYLPV-------DFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eecch-------hhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 55555 25556666677666644 44444322 11223455555555
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.18 E-value=1.6e-06 Score=87.42 Aligned_cols=190 Identities=28% Similarity=0.335 Sum_probs=139.6
Q ss_pred eEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCC-CccEEeccccccccccccccccCCCcceEEecC-
Q 035732 319 KISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCA-KLTRLEIYDCKRLEALPKGLHNLTSLQHLTIGG- 396 (559)
Q Consensus 319 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~- 396 (559)
.+....+..... ...+..++.++.|++.++ .+..++....... +|+.|+++++. +..+|..+..+++|+.|+++.
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCc-ccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCc
Confidence 456665544222 223445578999999987 4466666666663 89999999986 566667789999999999999
Q ss_pred CCCCCcCCC-CCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCCCceeecccccccccccccccccceeec
Q 035732 397 ALPSLEEDG-LPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTALPLLASLTSLGI 475 (559)
Q Consensus 397 ~l~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 475 (559)
.+..++... ..++|+.|++++|. +...... .....+|+++.+++|. ....+. .+..+.++..+.+
T Consensus 174 ~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~----~~~~~~L~~l~~~~N~--~~~~~~-------~~~~~~~l~~l~l 239 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPE----IELLSALEELDLSNNS--IIELLS-------SLSNLKNLSGLEL 239 (394)
T ss_pred hhhhhhhhhhhhhhhhheeccCCc-cccCchh----hhhhhhhhhhhhcCCc--ceecch-------hhhhccccccccc
Confidence 888887765 78999999999998 5433221 2355569999999873 122222 2445678888887
Q ss_pred cccccccccccccccCCCcCeEEecCCCCCcccCCCCCCCCceEEEecCChh
Q 035732 476 SRFPNLERLSSSIVDLQNLTLLQLWGCPKLKYFPKKGLPSSLLELDIVGCPL 527 (559)
Q Consensus 476 ~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~ 527 (559)
.+ +.+..++..+..++++++|++++ +.+++++..+-..+++.|+++++..
T Consensus 240 ~~-n~~~~~~~~~~~l~~l~~L~~s~-n~i~~i~~~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 240 SN-NKLEDLPESIGNLSNLETLDLSN-NQISSISSLGSLTNLRELDLSGNSL 289 (394)
T ss_pred CC-ceeeeccchhccccccceecccc-ccccccccccccCccCEEeccCccc
Confidence 77 55666666678889999999999 7899988855568999999998654
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.94 E-value=8.7e-06 Score=57.32 Aligned_cols=58 Identities=21% Similarity=0.271 Sum_probs=27.0
Q ss_pred CccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccc
Q 035732 292 SLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQIC 349 (559)
Q Consensus 292 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 349 (559)
+|++|++++|......+..+.++++|++|++++|.+...-+..|.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3455555554322222234445555555555554443333344455555555555544
No 43
>PLN03150 hypothetical protein; Provisional
Probab=97.90 E-value=2.1e-05 Score=83.46 Aligned_cols=103 Identities=21% Similarity=0.287 Sum_probs=51.3
Q ss_pred CceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEeccccccccccccccccCCCcceEEecC
Q 035732 317 LEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALPKGLHNLTSLQHLTIGG 396 (559)
Q Consensus 317 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 396 (559)
++.|++++|.+...+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+.++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 44455555555445555555555555555555544344444444455555555555554445555555555555555555
Q ss_pred -CCC-CCcC-C-CCCCCCceeeecCcc
Q 035732 397 -ALP-SLEE-D-GLPTNLQLLNIEGNM 419 (559)
Q Consensus 397 -~l~-~~~~-~-~~~~~L~~L~l~~~~ 419 (559)
.+. .+|. . ....++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 332 1222 1 112344556666655
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.90 E-value=1.9e-05 Score=55.61 Aligned_cols=59 Identities=17% Similarity=0.232 Sum_probs=29.9
Q ss_pred CCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEeccccc
Q 035732 316 SLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCK 374 (559)
Q Consensus 316 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 374 (559)
+|++|++++|.+...-+..|.++++|++|++++|.....-+..+..+++|+.|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45566666654433333445556666666666553322222244455555555555553
No 45
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.86 E-value=6e-06 Score=87.30 Aligned_cols=155 Identities=17% Similarity=0.150 Sum_probs=96.6
Q ss_pred CCCCccEEEeccccCccEEeccCchhh-hccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcc
Q 035732 63 RIPKLEELEIKNIKNETYIWKSHDELL-QDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVK 141 (559)
Q Consensus 63 ~l~~L~~L~l~~~~~~~~~~~~~~~~~-~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~ 141 (559)
+-.+|++|++.+...+.. -++..+ .-+|+|+.|.+++- .+.. +.+.+++..||+|..||++++.. ..
T Consensus 120 sr~nL~~LdI~G~~~~s~---~W~~kig~~LPsL~sL~i~~~-~~~~-------~dF~~lc~sFpNL~sLDIS~TnI-~n 187 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSN---GWPKKIGTMLPSLRSLVISGR-QFDN-------DDFSQLCASFPNLRSLDISGTNI-SN 187 (699)
T ss_pred HHHhhhhcCccccchhhc---cHHHHHhhhCcccceEEecCc-eecc-------hhHHHHhhccCccceeecCCCCc-cC
Confidence 346888999988655544 222222 34899999999873 3322 34677777789999999999754 44
Q ss_pred cCCCCCCCCccceeeccCCCCcc--ccCCCCCCCCccEEEecccCCCcc--cCccccc--CCCCCccEEecCCCCCcccc
Q 035732 142 LPQSSFSLSSLREIEIYNCSSLV--SFPEVALPSKLKKIRISYCGALKS--LPEAWMC--DTNSSLEILNIEHCRWLTFI 215 (559)
Q Consensus 142 ~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~--~~~~~L~~L~l~~~~~~~~~ 215 (559)
+ .+++++++|+.|.+++-.... .+..+..+++|+.||+|....... +...+.. ..+|+|+.||.++++.-..+
T Consensus 188 l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 188 L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred c-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 4 567889999999888753332 122577889999999987653321 1111111 23478888888877532222
Q ss_pred ccc--cCCCCcceEEee
Q 035732 216 AAV--QLPSSLKKLQIR 230 (559)
Q Consensus 216 ~~~--~~~~~L~~L~l~ 230 (559)
... ...++|+.+..-
T Consensus 267 le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 267 LEELLNSHPNLQQIAAL 283 (699)
T ss_pred HHHHHHhCccHhhhhhh
Confidence 211 234455554433
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.82 E-value=5e-07 Score=91.20 Aligned_cols=222 Identities=20% Similarity=0.176 Sum_probs=130.6
Q ss_pred cCCCCceEEeeecCccccc-cccCCCCCccceeecccccCceecCCCCCC-CCCccEEecccccccccccc-------cc
Q 035732 313 NNTSLEKISIKRCGTLKIL-PSGLHNLRQLQEISIQICENLVSFPEGGLP-CAKLTRLEIYDCKRLEALPK-------GL 383 (559)
Q Consensus 313 ~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~-------~l 383 (559)
-+.+++.+.+-.-...+.. |-.+..|.+|++|.+.+|+.-+.- +... -..|++|--.+ .+..+.. .+
T Consensus 82 ~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~--GL~~lr~qLe~LIC~~--Sl~Al~~v~ascggd~ 157 (1096)
T KOG1859|consen 82 FLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAK--GLQELRHQLEKLICHN--SLDALRHVFASCGGDI 157 (1096)
T ss_pred HHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhh--hhHHHHHhhhhhhhhc--cHHHHHHHHHHhcccc
Confidence 3445555555443332222 555677899999999998654311 1111 01344442111 0110000 01
Q ss_pred cc---CCCcceEEecC-CCCCCcC-CCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCCCceeeccccc
Q 035732 384 HN---LTSLQHLTIGG-ALPSLEE-DGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENK 458 (559)
Q Consensus 384 ~~---l~~L~~L~l~~-~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 458 (559)
.+ .-.|...+.+. .+..+.. ...++.|+.|+|+.|+ +.++ ..+..++.|++|+|++|+ +..++.-.
T Consensus 158 ~ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk-~~~v-----~~Lr~l~~LkhLDlsyN~--L~~vp~l~- 228 (1096)
T KOG1859|consen 158 SNSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNK-FTKV-----DNLRRLPKLKHLDLSYNC--LRHVPQLS- 228 (1096)
T ss_pred ccchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh-hhhh-----HHHHhcccccccccccch--hccccccc-
Confidence 11 12355555555 4444433 4567899999999999 5444 247889999999999986 55555532
Q ss_pred ccccccccccccceeeccccccccccccccccCCCcCeEEecCCCCCcccCC---CCCCCCceEEEecCChhhhhhhhcc
Q 035732 459 RLGTALPLLASLTSLGISRFPNLERLSSSIVDLQNLTLLQLWGCPKLKYFPK---KGLPSSLLELDIVGCPLIEEKCRKD 535 (559)
Q Consensus 459 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~---~~~~~~L~~L~l~~c~~l~~~~~~~ 535 (559)
..++. |+.|.++| +.++.+- ++.++.+|+.||+++ |-+....+ -+.+..|++|++.|||.--....+.
T Consensus 229 -----~~gc~-L~~L~lrn-N~l~tL~-gie~LksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~hRa 299 (1096)
T KOG1859|consen 229 -----MVGCK-LQLLNLRN-NALTTLR-GIENLKSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPWHRA 299 (1096)
T ss_pred -----hhhhh-heeeeecc-cHHHhhh-hHHhhhhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCccccCHHHHH
Confidence 22334 99999999 5566654 357899999999999 66665444 3456799999999999865444433
Q ss_pred Ccccccc-cCCCceeEEeceEe
Q 035732 536 GGQYWDL-LTHIPYVLIAGKFV 556 (559)
Q Consensus 536 ~~~~~~~-~~~~~~~~~~~~~~ 556 (559)
..+.|.. -..-..++.||+.+
T Consensus 300 ataqYl~~~~a~~~f~LDgk~l 321 (1096)
T KOG1859|consen 300 ATAQYLHKNSAPVKFKLDGKAL 321 (1096)
T ss_pred HHHhHhccccCCcceEecceec
Confidence 3332222 22222355566643
No 47
>PLN03150 hypothetical protein; Provisional
Probab=97.75 E-value=9.2e-05 Score=78.61 Aligned_cols=72 Identities=18% Similarity=0.202 Sum_probs=37.5
Q ss_pred hhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccCCCCCCCCccceeeccCCCCcccc
Q 035732 87 ELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLPQSSFSLSSLREIEIYNCSSLVSF 166 (559)
Q Consensus 87 ~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~ 166 (559)
..++.+++|+.|+|+++ .+....+ ..+..+ ++|+.|++++|.....+|..+..+++|+.|++++|.....+
T Consensus 436 ~~i~~L~~L~~L~Ls~N-~l~g~iP----~~~~~l----~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~i 506 (623)
T PLN03150 436 NDISKLRHLQSINLSGN-SIRGNIP----PSLGSI----TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506 (623)
T ss_pred HHHhCCCCCCEEECCCC-cccCcCC----hHHhCC----CCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccC
Confidence 34555666666666654 3332111 124444 56666666665544455555556666666666655444444
Q ss_pred C
Q 035732 167 P 167 (559)
Q Consensus 167 ~ 167 (559)
|
T Consensus 507 P 507 (623)
T PLN03150 507 P 507 (623)
T ss_pred C
Confidence 4
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=9.4e-06 Score=73.64 Aligned_cols=65 Identities=12% Similarity=0.109 Sum_probs=33.6
Q ss_pred CCccEEEEcCCCCccch-HHhhccCCCCceEEeeecCccc-cccccCCCCCccceeecccccCceec
Q 035732 291 PSLKSLYVYGCSKVESI-AERLDNNTSLEKISIKRCGTLK-ILPSGLHNLRQLQEISIQICENLVSF 355 (559)
Q Consensus 291 ~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~ 355 (559)
+++..+.+..|+.-+.- ......++.+--|.++.+++.. .-...+.++++|..|.+.+++....+
T Consensus 199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 45555555555432211 1233344455555555554433 12234566777777777777665443
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.58 E-value=1.6e-05 Score=80.42 Aligned_cols=123 Identities=23% Similarity=0.276 Sum_probs=65.1
Q ss_pred CCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEec
Q 035732 291 PSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEI 370 (559)
Q Consensus 291 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 370 (559)
.+++.|++.++.... +...+..+.+|++|++++|.+... .++..++.|+.|++.+|.. ..+.. +..+++|+.+++
T Consensus 95 ~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i-~~~~~-~~~l~~L~~l~l 169 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLI-SDISG-LESLKSLKLLDL 169 (414)
T ss_pred cceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhheeccCcc-hhccC-CccchhhhcccC
Confidence 567777776655332 222256677777777777665542 3345555677777777643 22221 222446667777
Q ss_pred cccccccccc-cccccCCCcceEEecC-CCCCCcCCCCCCCCceeeecCcc
Q 035732 371 YDCKRLEALP-KGLHNLTSLQHLTIGG-ALPSLEEDGLPTNLQLLNIEGNM 419 (559)
Q Consensus 371 ~~~~~~~~~~-~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~ 419 (559)
++|.....-+ . ...+.+++.+.+++ .+..+........+..+++..|.
T Consensus 170 ~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 170 SYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNK 219 (414)
T ss_pred Ccchhhhhhhhh-hhhccchHHHhccCCchhcccchHHHHHHHHhhccccc
Confidence 6665432211 1 35566666666666 44444443333444444444444
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.55 E-value=1.5e-06 Score=87.80 Aligned_cols=180 Identities=20% Similarity=0.209 Sum_probs=115.1
Q ss_pred cCCCccCccEEeecCCCceEeeccCCccCcccceeeecCCccee-----ecCCCCCC--CCCccEEEeccccCccEEecc
Q 035732 12 SVSSLPAFCKLEIDGCKKVLWRSATDHLGSQNSVVCRDASNQVF-----LAGPLKPR--IPKLEELEIKNIKNETYIWKS 84 (559)
Q Consensus 12 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~--l~~L~~L~l~~~~~~~~~~~~ 84 (559)
++..|..||+|.+++|+.-...+...-+...+.+.|.+...-+. =.|.+..+ ...|.+.+.+++ .+. .
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN-~L~----~ 178 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYN-RLV----L 178 (1096)
T ss_pred eeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchh-hHH----h
Confidence 45678999999999998777655555566677777776654332 12223222 334555555544 222 2
Q ss_pred CchhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccCCCCCCCCccceeeccCCCCcc
Q 035732 85 HDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLPQSSFSLSSLREIEIYNCSSLV 164 (559)
Q Consensus 85 ~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~ 164 (559)
-...+.-++.|+.|+|+++ ++++. ..+..+ ++|++|||++|.. ..+|..-..-..|..|.+++| -++
T Consensus 179 mD~SLqll~ale~LnLshN-k~~~v------~~Lr~l----~~LkhLDlsyN~L-~~vp~l~~~gc~L~~L~lrnN-~l~ 245 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHN-KFTKV------DNLRRL----PKLKHLDLSYNCL-RHVPQLSMVGCKLQLLNLRNN-ALT 245 (1096)
T ss_pred HHHHHHHHHHhhhhccchh-hhhhh------HHHHhc----ccccccccccchh-ccccccchhhhhheeeeeccc-HHH
Confidence 2345566899999999985 66664 457777 9999999999864 677653222233888899886 455
Q ss_pred ccCCCCCCCCccEEEecccCCCcccCcccccCCCCCccEEecCCCC
Q 035732 165 SFPEVALPSKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCR 210 (559)
Q Consensus 165 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 210 (559)
.+-.+.++.+|+.||++.|-. .......+.-.+..|+.|.+.||+
T Consensus 246 tL~gie~LksL~~LDlsyNll-~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 246 TLRGIENLKSLYGLDLSYNLL-SEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhhHHhhhhhhccchhHhhh-hcchhhhHHHHHHHHHHHhhcCCc
Confidence 566677888888899988752 222211110122557888888876
No 51
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.53 E-value=3.4e-06 Score=83.09 Aligned_cols=103 Identities=24% Similarity=0.246 Sum_probs=72.5
Q ss_pred CCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccCCCCCCCCccceeeccCCCCccccCCCCCC
Q 035732 93 CSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLPQSSFSLSSLREIEIYNCSSLVSFPEVALP 172 (559)
Q Consensus 93 ~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 172 (559)
--|+.|-+++ ++++.+|.+ ++.+ +.|..|+.+.|.. ..+|..+..+.+|+.|.+..|....-.+++. .
T Consensus 143 lpLkvli~sN-Nkl~~lp~~-----ig~~----~tl~~ld~s~nei-~slpsql~~l~slr~l~vrRn~l~~lp~El~-~ 210 (722)
T KOG0532|consen 143 LPLKVLIVSN-NKLTSLPEE-----IGLL----PTLAHLDVSKNEI-QSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-S 210 (722)
T ss_pred CcceeEEEec-CccccCCcc-----cccc----hhHHHhhhhhhhh-hhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-C
Confidence 3477888877 477777765 4444 7778888888754 6777778888888888887764433333455 3
Q ss_pred CCccEEEecccCCCcccCcccccCCCCCccEEecCCCC
Q 035732 173 SKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCR 210 (559)
Q Consensus 173 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 210 (559)
-.|..||++.|+ +..+|..| ..+..|++|.+.+|+
T Consensus 211 LpLi~lDfScNk-is~iPv~f--r~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 211 LPLIRLDFSCNK-ISYLPVDF--RKMRHLQVLQLENNP 245 (722)
T ss_pred CceeeeecccCc-eeecchhh--hhhhhheeeeeccCC
Confidence 457888888766 77788776 556778888888775
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=5.3e-05 Score=68.89 Aligned_cols=186 Identities=14% Similarity=0.132 Sum_probs=84.1
Q ss_pred cCCCCceEEeeecCccc--cccccCCCCCccceeecccccCceecCCCCCCCCCccEEecccccc-ccccccccccCCCc
Q 035732 313 NNTSLEKISIKRCGTLK--ILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKR-LEALPKGLHNLTSL 389 (559)
Q Consensus 313 ~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~l~~l~~L 389 (559)
.++.++.+++.+|.+.. ++...+.++|.|+.|+++.|+.-..+.....+..+|++|-+.+... .+.....+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 34555556666555443 2233345566666666666544333333223444566666554321 11122234555555
Q ss_pred ceEEecC-CCCCCc-----CCCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCCCceeecccccccccc
Q 035732 390 QHLTIGG-ALPSLE-----EDGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTA 463 (559)
Q Consensus 390 ~~L~l~~-~l~~~~-----~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 463 (559)
++|+++. ..+.+. ....-+.+.+|++..|......-. ...-+.+|++..+.+..|. +.....+. .
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~--~~l~r~Fpnv~sv~v~e~P--lK~~s~ek-----~ 219 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNK--NKLSRIFPNVNSVFVCEGP--LKTESSEK-----G 219 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHH--HhHHhhcccchheeeecCc--ccchhhcc-----c
Confidence 6665554 222111 011223555555555542111111 1223456666666666652 12222211 1
Q ss_pred cccccccceeecccccccccccc--ccccCCCcCeEEecCCCCCccc
Q 035732 464 LPLLASLTSLGISRFPNLERLSS--SIVDLQNLTLLQLWGCPKLKYF 508 (559)
Q Consensus 464 ~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~L~l~~c~~l~~l 508 (559)
+..++.+..|.+.. +++..+.. .+..|+.|.-|.+.+.|-...+
T Consensus 220 se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 220 SEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred CCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 33334444555555 34444332 3455666666666665544443
No 53
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.51 E-value=1.6e-05 Score=82.68 Aligned_cols=122 Identities=29% Similarity=0.355 Sum_probs=66.6
Q ss_pred CCCccCccEEeecCCCceEeeccCCccCcccceeeecCCcceeecCCCCCCCCCccEEEeccc-cCccEEeccCchhhhc
Q 035732 13 VSSLPAFCKLEIDGCKKVLWRSATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELEIKNI-KNETYIWKSHDELLQD 91 (559)
Q Consensus 13 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~ 91 (559)
...+++|+.|.+.+|..+....... +....++|++|++.++ ................
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~----------------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 241 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDA----------------------LALKCPNLEELDLSGCCLLITLSPLLLLLLLSI 241 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHH----------------------HHhhCchhheecccCcccccccchhHhhhhhhh
Confidence 3347888888888887665322100 1113677777777662 2222211011123344
Q ss_pred cCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCc--ccCCCCCCCCccceeeccCCCCc
Q 035732 92 ICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLV--KLPQSSFSLSSLREIEIYNCSSL 163 (559)
Q Consensus 92 l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~--~~~~~~~~l~~L~~L~l~~~~~~ 163 (559)
+++|+.|++++|..+++ .++..++..|++|++|.+.+|..++ .+......+++|++|++++|..+
T Consensus 242 ~~~L~~l~l~~~~~isd-------~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTD-------IGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred cCCcCccchhhhhccCc-------hhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 67777777777655544 2455555555777777766665322 22233345677777777776554
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.45 E-value=4.9e-05 Score=80.55 Aligned_cols=109 Identities=17% Similarity=0.153 Sum_probs=77.9
Q ss_pred CCCCccEEEeccccCccEEeccCchhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCc-c
Q 035732 63 RIPKLEELEIKNIKNETYIWKSHDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLV-K 141 (559)
Q Consensus 63 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~-~ 141 (559)
-||.|++|.+.+..-... -......+||+|..|||+++ +++.+ .++++| ++|+.|.+.+-.... .
T Consensus 146 ~LPsL~sL~i~~~~~~~~---dF~~lc~sFpNL~sLDIS~T-nI~nl------~GIS~L----knLq~L~mrnLe~e~~~ 211 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDND---DFSQLCASFPNLRSLDISGT-NISNL------SGISRL----KNLQVLSMRNLEFESYQ 211 (699)
T ss_pred hCcccceEEecCceecch---hHHHHhhccCccceeecCCC-CccCc------HHHhcc----ccHHHHhccCCCCCchh
Confidence 599999999998643222 11234468999999999996 78887 468888 999999998864422 1
Q ss_pred cCCCCCCCCccceeeccCCCCcccc--C-----CCCCCCCccEEEecccCC
Q 035732 142 LPQSSFSLSSLREIEIYNCSSLVSF--P-----EVALPSKLKKIRISYCGA 185 (559)
Q Consensus 142 ~~~~~~~l~~L~~L~l~~~~~~~~~--~-----~~~~~~~L~~L~l~~~~~ 185 (559)
--..+..+++|+.||++........ . -...+|+||.||.++...
T Consensus 212 ~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 212 DLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred hHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 1124678999999999975432221 1 134589999999998763
No 55
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.44 E-value=4.6e-05 Score=77.13 Aligned_cols=99 Identities=19% Similarity=0.197 Sum_probs=61.4
Q ss_pred CceeEEecccCCCCcccCCCCCCCCccceeeccCCCCccccCCCCCCCCccEEEecccCCCcccCcccccCCCCCccEEe
Q 035732 126 CRLEYLGLTSCHGLVKLPQSSFSLSSLREIEIYNCSSLVSFPEVALPSKLKKIRISYCGALKSLPEAWMCDTNSSLEILN 205 (559)
Q Consensus 126 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 205 (559)
.+|+.|++.+|.+ ..+...+..+++|++|++++| .++.+..+..++.|+.|++.+|. ++.+... ..+++|+.++
T Consensus 95 ~~l~~l~l~~n~i-~~i~~~l~~~~~L~~L~ls~N-~I~~i~~l~~l~~L~~L~l~~N~-i~~~~~~---~~l~~L~~l~ 168 (414)
T KOG0531|consen 95 KSLEALDLYDNKI-EKIENLLSSLVNLQVLDLSFN-KITKLEGLSTLTLLKELNLSGNL-ISDISGL---ESLKSLKLLD 168 (414)
T ss_pred cceeeeeccccch-hhcccchhhhhcchheecccc-ccccccchhhccchhhheeccCc-chhccCC---ccchhhhccc
Confidence 7777777777644 555444666777777777776 45556556666667777777776 5544443 3346677777
Q ss_pred cCCCCCcccccc--ccCCCCcceEEeec
Q 035732 206 IEHCRWLTFIAA--VQLPSSLKKLQIRR 231 (559)
Q Consensus 206 l~~~~~~~~~~~--~~~~~~L~~L~l~~ 231 (559)
+.+|. +..+.. .....+++.+.+.+
T Consensus 169 l~~n~-i~~ie~~~~~~~~~l~~l~l~~ 195 (414)
T KOG0531|consen 169 LSYNR-IVDIENDELSELISLEELDLGG 195 (414)
T ss_pred CCcch-hhhhhhhhhhhccchHHHhccC
Confidence 77774 444444 24445555555555
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.33 E-value=0.0002 Score=46.14 Aligned_cols=41 Identities=22% Similarity=0.324 Sum_probs=30.2
Q ss_pred cccceeeccccccccccccccccCCCcCeEEecCCCCCcccCC
Q 035732 468 ASLTSLGISRFPNLERLSSSIVDLQNLTLLQLWGCPKLKYFPK 510 (559)
Q Consensus 468 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 510 (559)
++|++|++++ +.++.++..+..+++|++|++++| .+++++.
T Consensus 1 ~~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETS-SS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccC-CCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 4688888888 567788877888889999999984 6776554
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.30 E-value=0.0002 Score=46.13 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=16.8
Q ss_pred ceeEEecccCCCCcccCCCCCCCCccceeeccCC
Q 035732 127 RLEYLGLTSCHGLVKLPQSSFSLSSLREIEIYNC 160 (559)
Q Consensus 127 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~ 160 (559)
+|++|++++|.. ..+|..+.++++|+.|++++|
T Consensus 2 ~L~~L~l~~N~i-~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQI-TDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS--SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCC-cccCchHhCCCCCCEEEecCC
Confidence 455555555543 445544555555555555555
No 58
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.12 E-value=5.2e-05 Score=78.85 Aligned_cols=110 Identities=24% Similarity=0.424 Sum_probs=57.8
Q ss_pred CceeEEecccCCCCcc--cCCCCCCCCccceeeccCC-CCccccC-----CCCCCCCccEEEecccCCCcccCcccccCC
Q 035732 126 CRLEYLGLTSCHGLVK--LPQSSFSLSSLREIEIYNC-SSLVSFP-----EVALPSKLKKIRISYCGALKSLPEAWMCDT 197 (559)
Q Consensus 126 ~~L~~L~l~~~~~l~~--~~~~~~~l~~L~~L~l~~~-~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 197 (559)
+.|+.|.+.+|..+.. +-.....+++|++|++.+| ......+ ....+++|+.|+++.+..+++......+..
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 6666666666554433 2233445666666666552 1111111 123346666666666665554444443344
Q ss_pred CCCccEEecCCCCCccccccc---cCCCCcceEEeecccCc
Q 035732 198 NSSLEILNIEHCRWLTFIAAV---QLPSSLKKLQIRRCDNI 235 (559)
Q Consensus 198 ~~~L~~L~l~~~~~~~~~~~~---~~~~~L~~L~l~~~~~l 235 (559)
+++|++|.+.+|..+++.... ..+++|++|++++|..+
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 566777776666543332211 44566777777777665
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.51 E-value=0.0041 Score=53.75 Aligned_cols=45 Identities=22% Similarity=0.212 Sum_probs=25.2
Q ss_pred CCcCCCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEee
Q 035732 400 SLEEDGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISR 445 (559)
Q Consensus 400 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~ 445 (559)
++.+...++.|++|.+-+|+ +.+--...-..+..+|+|+.|+...
T Consensus 105 dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 105 DLDPLASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred hcchhccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhh
Confidence 34445566677777777776 3322222224456666677766654
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.50 E-value=0.00062 Score=61.34 Aligned_cols=84 Identities=17% Similarity=0.132 Sum_probs=41.2
Q ss_pred CCccEEEEcCCCCccchH----HhhccCCCCceEEeeecCccc---cc-------cccCCCCCccceeecccccCceecC
Q 035732 291 PSLKSLYVYGCSKVESIA----ERLDNNTSLEKISIKRCGTLK---IL-------PSGLHNLRQLQEISIQICENLVSFP 356 (559)
Q Consensus 291 ~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~---~~-------~~~~~~l~~L~~L~l~~~~~~~~~~ 356 (559)
..+..+++++|...+... ..+.+-.+|+...+++-.... .+ ...+-++|+|+..++++|..-...|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 567777777766554332 333444556665555432111 11 1233456666666666664433333
Q ss_pred CC----CCCCCCccEEeccccc
Q 035732 357 EG----GLPCAKLTRLEIYDCK 374 (559)
Q Consensus 357 ~~----~~~~~~L~~L~l~~~~ 374 (559)
.. ......|++|.+++|.
T Consensus 110 e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCC
Confidence 21 2223356666666553
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=7.3e-05 Score=67.34 Aligned_cols=54 Identities=19% Similarity=0.269 Sum_probs=28.4
Q ss_pred CccEEeccccccccccccccccCCCcceEEecC-CCCCCcCCCCCCCCceeeecCcc
Q 035732 364 KLTRLEIYDCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEEDGLPTNLQLLNIEGNM 419 (559)
Q Consensus 364 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~ 419 (559)
+.+.|+..||.. .++ .....|+.|+.|.++- .|+.+.+...|.+|++|+|..|.
T Consensus 20 ~vkKLNcwg~~L-~DI-sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~ 74 (388)
T KOG2123|consen 20 NVKKLNCWGCGL-DDI-SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNC 74 (388)
T ss_pred HhhhhcccCCCc-cHH-HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcc
Confidence 455556655542 222 2234556666666655 55555555555555555555554
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.32 E-value=0.00077 Score=60.75 Aligned_cols=58 Identities=19% Similarity=0.177 Sum_probs=35.8
Q ss_pred CccEEEEcCCCCccc-----hHHhhccCCCCceEEeeecCccc----cccccCCCCCccceeecccc
Q 035732 292 SLKSLYVYGCSKVES-----IAERLDNNTSLEKISIKRCGTLK----ILPSGLHNLRQLQEISIQIC 349 (559)
Q Consensus 292 ~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~ 349 (559)
+|+.+.+..|.+-.. ....+..+.+|+.|++.+|.++. .+...++..+.|+.|.+.+|
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 567777766654221 12345667888888888887654 23334455566777777776
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.28 E-value=0.0011 Score=59.69 Aligned_cols=35 Identities=14% Similarity=0.061 Sum_probs=14.7
Q ss_pred CceeEEecccC--CCCcccCCCCCCCCccceeeccCC
Q 035732 126 CRLEYLGLTSC--HGLVKLPQSSFSLSSLREIEIYNC 160 (559)
Q Consensus 126 ~~L~~L~l~~~--~~l~~~~~~~~~l~~L~~L~l~~~ 160 (559)
++|++|.++.| +....++-....+|+|++|++++|
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence 44455555444 222223322333444555444444
No 64
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.20 E-value=0.00025 Score=56.97 Aligned_cols=80 Identities=11% Similarity=0.068 Sum_probs=34.4
Q ss_pred CCccEEEeccccCccEEeccCchhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccCC
Q 035732 65 PKLEELEIKNIKNETYIWKSHDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLPQ 144 (559)
Q Consensus 65 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~~ 144 (559)
.+|+..+++++ .++. .++.+...++.+..|++++ +.+.++|.+ +..+ +.|+.|+++.|+. ...|.
T Consensus 53 ~el~~i~ls~N-~fk~---fp~kft~kf~t~t~lNl~~-neisdvPeE-----~Aam----~aLr~lNl~~N~l-~~~p~ 117 (177)
T KOG4579|consen 53 YELTKISLSDN-GFKK---FPKKFTIKFPTATTLNLAN-NEISDVPEE-----LAAM----PALRSLNLRFNPL-NAEPR 117 (177)
T ss_pred ceEEEEecccc-hhhh---CCHHHhhccchhhhhhcch-hhhhhchHH-----Hhhh----HHhhhcccccCcc-ccchH
Confidence 34444445444 2333 4444444444555555544 244444433 2233 4445555555433 33333
Q ss_pred CCCCCCccceeeccC
Q 035732 145 SSFSLSSLREIEIYN 159 (559)
Q Consensus 145 ~~~~l~~L~~L~l~~ 159 (559)
-+..+.++..|+..+
T Consensus 118 vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 118 VIAPLIKLDMLDSPE 132 (177)
T ss_pred HHHHHHhHHHhcCCC
Confidence 333344444444433
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.10 E-value=0.0098 Score=51.50 Aligned_cols=104 Identities=11% Similarity=0.102 Sum_probs=60.3
Q ss_pred CCCccEEEeccccCccEEeccCchhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccC
Q 035732 64 IPKLEELEIKNIKNETYIWKSHDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLP 143 (559)
Q Consensus 64 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~ 143 (559)
..+...+++.++.-.. ...+-.++.|.+|.+.+ +.++.|.+.. . ..+++|..|.+.+|.. ..+.
T Consensus 41 ~d~~d~iDLtdNdl~~------l~~lp~l~rL~tLll~n-NrIt~I~p~L-----~---~~~p~l~~L~LtnNsi-~~l~ 104 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRK------LDNLPHLPRLHTLLLNN-NRITRIDPDL-----D---TFLPNLKTLILTNNSI-QELG 104 (233)
T ss_pred ccccceecccccchhh------cccCCCccccceEEecC-Ccceeeccch-----h---hhccccceEEecCcch-hhhh
Confidence 3455566666553211 13344567777777776 4677765541 1 1227777777777654 3222
Q ss_pred --CCCCCCCccceeeccCCCCccccC----CCCCCCCccEEEeccc
Q 035732 144 --QSSFSLSSLREIEIYNCSSLVSFP----EVALPSKLKKIRISYC 183 (559)
Q Consensus 144 --~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~l~~~ 183 (559)
..+..+|.|++|.+-+|+....-- -+..+++|+.||+++-
T Consensus 105 dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 105 DLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 235567788888887775433221 2556788888888763
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.90 E-value=0.00037 Score=62.93 Aligned_cols=102 Identities=20% Similarity=0.186 Sum_probs=67.0
Q ss_pred CCCccceeecccccCceecCCCCCCCCCccEEeccccccccccccccccCCCcceEEecC-CCCCCcC---CCCCCCCce
Q 035732 337 NLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEE---DGLPTNLQL 412 (559)
Q Consensus 337 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~---~~~~~~L~~ 412 (559)
.+.+.++|+.++|. +..+. ....++.||+|.++-|++ +.+ ..+..+++|++|++.. .|.++.+ ...+++|+.
T Consensus 17 dl~~vkKLNcwg~~-L~DIs-ic~kMp~lEVLsLSvNkI-ssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGCG-LDDIS-ICEKMPLLEVLSLSVNKI-SSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCCC-ccHHH-HHHhcccceeEEeecccc-ccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 35677888888874 33332 123456899999988764 333 3578889999999987 7776655 446788888
Q ss_pred eeecCccchhhhhhh-cccccccCccccEEE
Q 035732 413 LNIEGNMEIWKSMIE-RGRGFHRFSSLRRLT 442 (559)
Q Consensus 413 L~l~~~~~l~~~~~~-~~~~~~~l~~L~~L~ 442 (559)
|.|..|+--...... ....++-+|+|++|+
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 888888622211111 113467788888886
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.81 E-value=0.0045 Score=55.85 Aligned_cols=105 Identities=17% Similarity=0.128 Sum_probs=56.3
Q ss_pred CcceEEecC-CCCCCcCCCCCCCCceeeecCccc-hhhhhhhcccccccCccccEEEEeecCCC-ceeeccccccccccc
Q 035732 388 SLQHLTIGG-ALPSLEEDGLPTNLQLLNIEGNME-IWKSMIERGRGFHRFSSLRRLTISRCDDD-MVSFPLENKRLGTAL 464 (559)
Q Consensus 388 ~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~ 464 (559)
.|+.+++.+ .++++...-.+++|+.|.++.|+. ...-+. ..+..+|+|++|.+++|... +..+.. +
T Consensus 44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~---vl~e~~P~l~~l~ls~Nki~~lstl~p--------l 112 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLE---VLAEKAPNLKVLNLSGNKIKDLSTLRP--------L 112 (260)
T ss_pred chhhhhhhccceeecccCCCcchhhhhcccCCcccccccce---ehhhhCCceeEEeecCCccccccccch--------h
Confidence 344444444 444443444456777777777731 111111 23455678888888877543 223332 4
Q ss_pred ccccccceeecccccccccccc---ccccCCCcCeEEecCCC
Q 035732 465 PLLASLTSLGISRFPNLERLSS---SIVDLQNLTLLQLWGCP 503 (559)
Q Consensus 465 ~~l~~L~~L~l~~~~~l~~~~~---~~~~~~~L~~L~l~~c~ 503 (559)
..+++|..|++.+|.....--. .+.-+++|+.|+..++.
T Consensus 113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 5567777778777764441111 23446777777766653
No 68
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.32 E-value=0.0013 Score=53.07 Aligned_cols=90 Identities=14% Similarity=0.248 Sum_probs=55.7
Q ss_pred CCceeeecCccchhhhhhhcccccccCccccEEEEeecCCCceeecccccccccccccccccceeecccccccccccccc
Q 035732 409 NLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSSSI 488 (559)
Q Consensus 409 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 488 (559)
-+-.++|++|..+. +....+.+.+-..|+..++++| ....||... ...++.+++|++++ +.+.++|.++
T Consensus 28 E~h~ldLssc~lm~--i~davy~l~~~~el~~i~ls~N--~fk~fp~kf------t~kf~t~t~lNl~~-neisdvPeE~ 96 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMY--IADAVYMLSKGYELTKISLSDN--GFKKFPKKF------TIKFPTATTLNLAN-NEISDVPEEL 96 (177)
T ss_pred HhhhcccccchhhH--HHHHHHHHhCCceEEEEecccc--hhhhCCHHH------hhccchhhhhhcch-hhhhhchHHH
Confidence 44556777776321 1111124556667777778776 455565532 22335777888887 6778888877
Q ss_pred ccCCCcCeEEecCCCCCcccCC
Q 035732 489 VDLQNLTLLQLWGCPKLKYFPK 510 (559)
Q Consensus 489 ~~~~~L~~L~l~~c~~l~~l~~ 510 (559)
..++.|+.|++++ |.+...|.
T Consensus 97 Aam~aLr~lNl~~-N~l~~~p~ 117 (177)
T KOG4579|consen 97 AAMPALRSLNLRF-NPLNAEPR 117 (177)
T ss_pred hhhHHhhhccccc-CccccchH
Confidence 7788888888887 44555554
No 69
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.15 E-value=0.0037 Score=54.05 Aligned_cols=83 Identities=23% Similarity=0.390 Sum_probs=57.4
Q ss_pred ccEEEeccccCccEEeccCchhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCccc-CCC
Q 035732 67 LEELEIKNIKNETYIWKSHDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKL-PQS 145 (559)
Q Consensus 67 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~-~~~ 145 (559)
++.++-+++ .+.. +..+.+..++.++.|.+.+|..+.+ ..+..+....++|+.|+|++|+.+++. -..
T Consensus 103 IeaVDAsds-~I~~---eGle~L~~l~~i~~l~l~~ck~~dD-------~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~ 171 (221)
T KOG3864|consen 103 IEAVDASDS-SIMY---EGLEHLRDLRSIKSLSLANCKYFDD-------WCLERLGGLAPSLQDLDLSGCPRITDGGLAC 171 (221)
T ss_pred EEEEecCCc-hHHH---HHHHHHhccchhhhheeccccchhh-------HHHHHhcccccchheeeccCCCeechhHHHH
Confidence 445555554 2322 4445567788888888999988776 466677667789999999999876532 234
Q ss_pred CCCCCccceeeccCC
Q 035732 146 SFSLSSLREIEIYNC 160 (559)
Q Consensus 146 ~~~l~~L~~L~l~~~ 160 (559)
+.++++|+.|.+.+-
T Consensus 172 L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 172 LLKLKNLRRLHLYDL 186 (221)
T ss_pred HHHhhhhHHHHhcCc
Confidence 567888888888764
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.78 E-value=0.22 Score=40.88 Aligned_cols=102 Identities=18% Similarity=0.196 Sum_probs=45.9
Q ss_pred CCCCCCccEEEeccccCccEEeccCchhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCc
Q 035732 61 KPRIPKLEELEIKNIKNETYIWKSHDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLV 140 (559)
Q Consensus 61 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~ 140 (559)
+....+|+.+.+.+ .++. +....|..+++|+.+.+.. .+..+.... +... ++++++.+.++ ..
T Consensus 8 F~~~~~l~~i~~~~--~~~~---I~~~~F~~~~~l~~i~~~~--~~~~i~~~~----F~~~----~~l~~i~~~~~--~~ 70 (129)
T PF13306_consen 8 FYNCSNLESITFPN--TIKK---IGENAFSNCTSLKSINFPN--NLTSIGDNA----FSNC----KSLESITFPNN--LK 70 (129)
T ss_dssp TTT-TT--EEEETS--T--E---E-TTTTTT-TT-SEEEESS--TTSCE-TTT----TTT-----TT-EEEEETST--T-
T ss_pred HhCCCCCCEEEECC--CeeE---eChhhcccccccccccccc--cccccceee----eecc----ccccccccccc--cc
Confidence 34566777777763 3444 5566667777777777765 366555442 3333 56777777552 23
Q ss_pred ccC-CCCCCCCccceeeccCCCCccccC--CCCCCCCccEEEecc
Q 035732 141 KLP-QSSFSLSSLREIEIYNCSSLVSFP--EVALPSKLKKIRISY 182 (559)
Q Consensus 141 ~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~ 182 (559)
.++ ..+..+++|+.+.+..+ +..++ .+..+ +|+.+.+..
T Consensus 71 ~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 71 SIGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp EE-TTTTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 333 33455777777777542 22222 24444 666665543
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.02 E-value=0.011 Score=51.24 Aligned_cols=63 Identities=22% Similarity=0.246 Sum_probs=32.3
Q ss_pred CCCccEEEeccccCccEEeccCchhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccC
Q 035732 64 IPKLEELEIKNIKNETYIWKSHDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSC 136 (559)
Q Consensus 64 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~ 136 (559)
++.++.|.+.+|.++.+ |.+. ..-+-.++|+.|+|+.|+.+++-.. ..+.++ ++|+.|.+.+-
T Consensus 124 l~~i~~l~l~~ck~~dD-~~L~-~l~~~~~~L~~L~lsgC~rIT~~GL----~~L~~l----knLr~L~l~~l 186 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDD-WCLE-RLGGLAPSLQDLDLSGCPRITDGGL----ACLLKL----KNLRRLHLYDL 186 (221)
T ss_pred cchhhhheeccccchhh-HHHH-HhcccccchheeeccCCCeechhHH----HHHHHh----hhhHHHHhcCc
Confidence 55555566666655544 2222 1112356667777766666655211 233344 66666666553
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.99 E-value=0.32 Score=39.87 Aligned_cols=106 Identities=16% Similarity=0.158 Sum_probs=58.7
Q ss_pred ccCCCccCccEEeecCCCceEeeccCCccCcccceeeecCCcceeecCCCCCCCCCccEEEeccccCccEEeccCchhhh
Q 035732 11 VSVSSLPAFCKLEIDGCKKVLWRSATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHDELLQ 90 (559)
Q Consensus 11 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 90 (559)
..|..+++|+.+.+.+. ...+... .+..+++|+++.+.+ +++. +....+.
T Consensus 6 ~~F~~~~~l~~i~~~~~-~~~I~~~------------------------~F~~~~~l~~i~~~~--~~~~---i~~~~F~ 55 (129)
T PF13306_consen 6 NAFYNCSNLESITFPNT-IKKIGEN------------------------AFSNCTSLKSINFPN--NLTS---IGDNAFS 55 (129)
T ss_dssp TTTTT-TT--EEEETST---EE-TT------------------------TTTT-TT-SEEEESS--TTSC---E-TTTTT
T ss_pred HHHhCCCCCCEEEECCC-eeEeChh------------------------hcccccccccccccc--cccc---cceeeee
Confidence 35788889999998742 2233332 234577899999876 3555 6667788
Q ss_pred ccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccC-CCCCCCCccceeeccC
Q 035732 91 DICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLP-QSSFSLSSLREIEIYN 159 (559)
Q Consensus 91 ~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~ 159 (559)
.+++|+.+.+.. .+..+... .+... ++|+.+.+..+ +..++ ..+.++ +++.+.+..
T Consensus 56 ~~~~l~~i~~~~--~~~~i~~~----~F~~~----~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 56 NCKSLESITFPN--NLKSIGDN----AFSNC----TNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp T-TT-EEEEETS--TT-EE-TT----TTTT-----TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccccc--cccccccc----ccccc----ccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 898999999965 55555554 23334 89999999764 24443 446666 888888865
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.07 E-value=0.074 Score=26.16 Aligned_cols=16 Identities=38% Similarity=0.447 Sum_probs=6.4
Q ss_pred CcCeEEecCCCCCcccC
Q 035732 493 NLTLLQLWGCPKLKYFP 509 (559)
Q Consensus 493 ~L~~L~l~~c~~l~~l~ 509 (559)
+|+.|++++|+ ++++|
T Consensus 2 ~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp T-SEEEETSS---SSE-
T ss_pred ccCEEECCCCC-CCCCc
Confidence 45555555543 54443
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.87 E-value=0.054 Score=28.76 Aligned_cols=19 Identities=37% Similarity=0.487 Sum_probs=9.8
Q ss_pred eeEEecccCCCCcccCCCCC
Q 035732 128 LEYLGLTSCHGLVKLPQSSF 147 (559)
Q Consensus 128 L~~L~l~~~~~l~~~~~~~~ 147 (559)
|++|++++|.. +.+|.+++
T Consensus 2 L~~Ldls~n~l-~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNL-TSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEE-SEEGTTTT
T ss_pred ccEEECCCCcC-EeCChhhc
Confidence 55666666533 45555443
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=91.89 E-value=0.093 Score=27.83 Aligned_cols=16 Identities=38% Similarity=0.416 Sum_probs=8.2
Q ss_pred cceeecccccccccccc
Q 035732 470 LTSLGISRFPNLERLSS 486 (559)
Q Consensus 470 L~~L~l~~~~~l~~~~~ 486 (559)
|+.|++++| .++.+|.
T Consensus 2 L~~Ldls~n-~l~~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPS 17 (22)
T ss_dssp ESEEEETSS-EESEEGT
T ss_pred ccEEECCCC-cCEeCCh
Confidence 455555554 4445554
No 76
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=86.84 E-value=0.62 Score=25.81 Aligned_cols=17 Identities=18% Similarity=0.534 Sum_probs=11.5
Q ss_pred cCCCcEEEeccCCCccc
Q 035732 92 ICSLKRLTIDSCPKLQS 108 (559)
Q Consensus 92 l~~L~~L~L~~c~~l~~ 108 (559)
+++|++|+|++|..+++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 35677777777766665
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=78.29 E-value=1.5 Score=24.19 Aligned_cols=18 Identities=33% Similarity=0.416 Sum_probs=10.9
Q ss_pred CCcCeEEecCCCCCcccCC
Q 035732 492 QNLTLLQLWGCPKLKYFPK 510 (559)
Q Consensus 492 ~~L~~L~l~~c~~l~~l~~ 510 (559)
++|+.|++++ |.++.+|.
T Consensus 2 ~~L~~L~L~~-N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSN-NQLSSLPP 19 (26)
T ss_pred CCCCEEECCC-CcCCcCCH
Confidence 4566666666 45666655
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=78.29 E-value=1.5 Score=24.19 Aligned_cols=18 Identities=33% Similarity=0.416 Sum_probs=10.9
Q ss_pred CCcCeEEecCCCCCcccCC
Q 035732 492 QNLTLLQLWGCPKLKYFPK 510 (559)
Q Consensus 492 ~~L~~L~l~~c~~l~~l~~ 510 (559)
++|+.|++++ |.++.+|.
T Consensus 2 ~~L~~L~L~~-N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSN-NQLSSLPP 19 (26)
T ss_pred CCCCEEECCC-CcCCcCCH
Confidence 4566666666 45666655
No 79
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=74.43 E-value=1.8 Score=43.83 Aligned_cols=38 Identities=21% Similarity=0.349 Sum_probs=19.2
Q ss_pred cCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccC
Q 035732 92 ICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSC 136 (559)
Q Consensus 92 l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~ 136 (559)
.+.+..+++++ +++..+ +.+..++...|+|+.|+|++|
T Consensus 217 ~p~i~sl~lsn-NrL~~L------d~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSN-NRLYHL------DALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred Ccceeeeeccc-chhhch------hhhhHHHHhcchhheeecccc
Confidence 44555555554 244443 334445555555666666555
No 80
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=72.60 E-value=2.5 Score=23.43 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=14.2
Q ss_pred CCcCeEEecCCCCCcccCC
Q 035732 492 QNLTLLQLWGCPKLKYFPK 510 (559)
Q Consensus 492 ~~L~~L~l~~c~~l~~l~~ 510 (559)
++|+.|++++ |+++++|+
T Consensus 2 ~~L~~L~vs~-N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSN-NQLTSLPE 19 (26)
T ss_pred cccceeecCC-CccccCcc
Confidence 4688888888 67888887
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=56.63 E-value=7.5 Score=20.76 Aligned_cols=13 Identities=15% Similarity=0.347 Sum_probs=9.0
Q ss_pred ccCccEEeecCCC
Q 035732 16 LPAFCKLEIDGCK 28 (559)
Q Consensus 16 l~~L~~L~l~~~~ 28 (559)
+++|+.|+|++|.
T Consensus 1 ~~~L~~L~l~~n~ 13 (24)
T PF13516_consen 1 NPNLETLDLSNNQ 13 (24)
T ss_dssp -TT-SEEE-TSSB
T ss_pred CCCCCEEEccCCc
Confidence 4789999999987
No 82
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=40.87 E-value=58 Score=20.59 Aligned_cols=32 Identities=22% Similarity=0.109 Sum_probs=18.8
Q ss_pred CCcCeEEecCCCCCcccCCCCCCCCceEEEecC
Q 035732 492 QNLTLLQLWGCPKLKYFPKKGLPSSLLELDIVG 524 (559)
Q Consensus 492 ~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~ 524 (559)
++++.|.+.+ .-=+.+....+|++|+.|.+.+
T Consensus 12 ~~l~~L~~g~-~fn~~i~~~~lP~sl~~L~fg~ 43 (44)
T PF05725_consen 12 SSLKSLIFGS-SFNQPIEPGSLPNSLKSLSFGY 43 (44)
T ss_pred CCCeEEEECC-ccCccCCCCccCCCceEEEeeC
Confidence 4677777743 2223344556677777777654
No 83
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=39.84 E-value=24 Score=19.57 Aligned_cols=16 Identities=38% Similarity=0.349 Sum_probs=9.1
Q ss_pred CCcCeEEecCCCCCccc
Q 035732 492 QNLTLLQLWGCPKLKYF 508 (559)
Q Consensus 492 ~~L~~L~l~~c~~l~~l 508 (559)
.+|+.|++++ |+++.+
T Consensus 2 ~~L~~L~L~~-NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQ-NKIKKI 17 (26)
T ss_pred CccCEEECCC-Ccccee
Confidence 4566666666 455544
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=30.20 E-value=35 Score=35.07 Aligned_cols=70 Identities=20% Similarity=0.115 Sum_probs=35.0
Q ss_pred CCCCccEEEeccccCccEEeccCchhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcc
Q 035732 63 RIPKLEELEIKNIKNETYIWKSHDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVK 141 (559)
Q Consensus 63 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~ 141 (559)
.++.+..+.++++ ++..+..+. ...+..|+|+.|+|+++... +..+ ..+.++ ....|+.|-+.||+.-+.
T Consensus 216 n~p~i~sl~lsnN-rL~~Ld~~s-slsq~apklk~L~LS~N~~~--~~~~---~el~K~--k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNN-RLYHLDALS-SLSQIAPKLKTLDLSHNHSK--ISSE---SELDKL--KGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccc-hhhchhhhh-HHHHhcchhheeecccchhh--hcch---hhhhhh--cCCCHHHeeecCCccccc
Confidence 4666777776665 333322222 23345677777777764111 1111 122222 124567777777765443
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=28.76 E-value=40 Score=18.87 Aligned_cols=13 Identities=23% Similarity=0.087 Sum_probs=8.1
Q ss_pred CceeEEecccCCC
Q 035732 126 CRLEYLGLTSCHG 138 (559)
Q Consensus 126 ~~L~~L~l~~~~~ 138 (559)
++|++|+|++|..
T Consensus 2 ~~L~~LdL~~N~i 14 (28)
T smart00368 2 PSLRELDLSNNKL 14 (28)
T ss_pred CccCEEECCCCCC
Confidence 4566777776643
Done!