Query 035732
Match_columns 559
No_of_seqs 275 out of 2843
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 09:35:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035732.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035732hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5.3E-37 1.8E-41 333.9 22.4 484 13-550 174-766 (768)
2 3t6q_A CD180 antigen; protein- 100.0 1.1E-34 3.9E-39 308.6 34.5 202 291-501 301-509 (606)
3 3rgz_A Protein brassinosteroid 100.0 1.9E-35 6.7E-40 321.6 25.0 419 63-527 124-550 (768)
4 3t6q_A CD180 antigen; protein- 100.0 6.2E-34 2.1E-38 302.9 32.7 416 62-527 78-559 (606)
5 3vq2_A TLR4, TOLL-like recepto 100.0 7.9E-33 2.7E-37 294.4 33.5 221 291-527 328-557 (606)
6 3j0a_A TOLL-like receptor 5; m 100.0 2.5E-32 8.6E-37 300.2 37.2 474 15-558 22-561 (844)
7 1ziw_A TOLL-like receptor 3; i 100.0 3.3E-32 1.1E-36 293.5 33.8 208 309-527 399-621 (680)
8 1ziw_A TOLL-like receptor 3; i 100.0 1E-31 3.5E-36 289.6 35.2 349 151-526 223-595 (680)
9 2z63_A TOLL-like receptor 4, v 100.0 1.4E-31 4.8E-36 282.8 31.1 436 17-527 28-530 (570)
10 3vq2_A TLR4, TOLL-like recepto 100.0 1.7E-31 5.7E-36 284.2 30.7 432 17-505 32-558 (606)
11 2z81_A CD282 antigen, TOLL-lik 100.0 5E-31 1.7E-35 277.1 27.7 444 8-527 19-509 (549)
12 4eco_A Uncharacterized protein 100.0 5E-31 1.7E-35 280.3 23.7 429 38-528 65-600 (636)
13 2z7x_B TOLL-like receptor 1, v 100.0 6.4E-31 2.2E-35 274.3 23.9 441 8-527 14-480 (520)
14 2z81_A CD282 antigen, TOLL-lik 100.0 1.2E-30 4E-35 274.3 25.5 437 64-559 25-512 (549)
15 2z63_A TOLL-like receptor 4, v 100.0 1.5E-30 5.1E-35 274.9 26.0 412 11-503 46-529 (570)
16 3j0a_A TOLL-like receptor 5; m 100.0 6E-30 2.1E-34 281.3 29.3 441 11-527 42-559 (844)
17 4ecn_A Leucine-rich repeat pro 100.0 1.1E-29 3.8E-34 274.5 24.2 343 140-527 438-839 (876)
18 4eco_A Uncharacterized protein 100.0 1.1E-29 3.7E-34 270.1 20.7 372 104-529 193-633 (636)
19 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 8.8E-29 3E-33 260.2 23.4 406 65-527 52-509 (562)
20 2z7x_B TOLL-like receptor 1, v 100.0 9.6E-28 3.3E-32 250.2 25.3 434 65-559 21-483 (520)
21 4g8a_A TOLL-like receptor 4; l 100.0 2.9E-26 9.9E-31 245.4 35.0 451 17-527 52-579 (635)
22 3v47_A TOLL-like receptor 5B a 100.0 1.2E-26 4.1E-31 237.8 27.5 357 17-446 30-405 (455)
23 4ecn_A Leucine-rich repeat pro 100.0 2.6E-27 9E-32 256.0 23.3 264 126-417 491-785 (876)
24 1o6v_A Internalin A; bacterial 99.9 6.6E-26 2.3E-30 232.5 25.8 347 64-510 45-392 (466)
25 1jl5_A Outer protein YOPM; leu 99.9 2.9E-26 9.8E-31 233.1 21.0 340 95-527 73-428 (454)
26 3v47_A TOLL-like receptor 5B a 99.9 8.9E-26 3E-30 231.3 24.1 368 64-503 29-406 (455)
27 4g8a_A TOLL-like receptor 4; l 99.9 8.8E-25 3E-29 233.8 32.0 455 60-558 46-581 (635)
28 1o6v_A Internalin A; bacterial 99.9 3.2E-25 1.1E-29 227.5 27.2 341 15-478 44-385 (466)
29 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.9E-25 1.7E-29 231.7 28.5 433 64-559 30-512 (562)
30 3o6n_A APL1; leucine-rich repe 99.9 1.7E-24 5.8E-29 216.9 26.4 307 63-421 43-352 (390)
31 4fmz_A Internalin; leucine ric 99.9 1.8E-24 6.2E-29 213.3 24.7 303 90-502 41-343 (347)
32 4fmz_A Internalin; leucine ric 99.9 1.6E-24 5.5E-29 213.6 24.0 300 126-526 44-344 (347)
33 2id5_A Lingo-1, leucine rich r 99.9 8.9E-24 3E-28 217.7 26.2 175 292-479 153-331 (477)
34 1jl5_A Outer protein YOPM; leu 99.9 3E-24 1E-28 218.3 21.5 372 63-527 9-408 (454)
35 3bz5_A Internalin-J, INLJ; leu 99.9 4.1E-24 1.4E-28 217.4 22.2 349 11-510 36-392 (457)
36 3oja_B Anopheles plasmodium-re 99.9 1.8E-23 6E-28 221.0 26.0 309 63-423 49-360 (597)
37 2id5_A Lingo-1, leucine rich r 99.9 6.2E-23 2.1E-27 211.4 27.7 294 65-396 32-329 (477)
38 3o6n_A APL1; leucine-rich repe 99.9 8.3E-23 2.9E-27 204.6 23.9 303 91-479 43-350 (390)
39 3bz5_A Internalin-J, INLJ; leu 99.9 3.2E-22 1.1E-26 203.5 25.7 319 88-510 37-356 (457)
40 3oja_B Anopheles plasmodium-re 99.9 3.8E-22 1.3E-26 210.9 22.7 282 91-419 49-335 (597)
41 3ogk_B Coronatine-insensitive 99.9 1.1E-23 3.8E-28 223.3 4.3 421 63-524 71-547 (592)
42 2ft3_A Biglycan; proteoglycan, 99.9 3.8E-21 1.3E-25 188.0 20.5 286 93-446 33-330 (332)
43 3ogk_B Coronatine-insensitive 99.9 1.6E-23 5.6E-28 222.0 2.3 434 12-501 68-547 (592)
44 1xku_A Decorin; proteoglycan, 99.9 3.7E-20 1.3E-24 180.8 25.4 282 94-446 32-329 (330)
45 1xku_A Decorin; proteoglycan, 99.9 3.6E-20 1.2E-24 181.0 24.3 291 126-502 31-329 (330)
46 2p1m_B Transport inhibitor res 99.9 4.4E-23 1.5E-27 218.8 1.5 187 2-210 49-246 (594)
47 2ft3_A Biglycan; proteoglycan, 99.9 3.1E-20 1.1E-24 181.5 21.3 262 65-395 54-328 (332)
48 1ogq_A PGIP-2, polygalacturona 99.8 3.5E-21 1.2E-25 186.2 11.6 248 257-529 52-305 (313)
49 4fcg_A Uncharacterized protein 99.8 6.5E-20 2.2E-24 178.4 18.3 105 291-396 206-310 (328)
50 1z7x_W Ribonuclease inhibitor; 99.8 2E-23 6.7E-28 214.3 -7.0 309 64-396 2-350 (461)
51 4fcg_A Uncharacterized protein 99.8 2.3E-20 8E-25 181.5 14.2 203 291-523 104-309 (328)
52 1ogq_A PGIP-2, polygalacturona 99.8 2.2E-20 7.5E-25 180.7 13.7 201 291-507 101-306 (313)
53 2p1m_B Transport inhibitor res 99.8 1.2E-21 4E-26 207.8 5.0 400 63-504 64-518 (594)
54 1z7x_W Ribonuclease inhibitor; 99.8 1.9E-22 6.5E-27 206.9 -2.9 377 92-526 2-438 (461)
55 3zyi_A Leucine-rich repeat-con 99.8 5E-19 1.7E-23 180.6 19.9 222 289-526 73-301 (452)
56 3zyj_A Leucine-rich repeat-con 99.8 7.3E-19 2.5E-23 178.7 19.9 219 291-526 64-290 (440)
57 3zyj_A Leucine-rich repeat-con 99.8 9.4E-19 3.2E-23 177.9 20.4 222 257-503 66-290 (440)
58 3zyi_A Leucine-rich repeat-con 99.8 1.5E-18 5.2E-23 177.0 19.9 221 257-503 77-301 (452)
59 2z66_A Variable lymphocyte rec 99.8 9.9E-19 3.4E-23 168.8 15.6 224 289-527 26-260 (306)
60 2z80_A TOLL-like receptor 2, v 99.8 3.3E-18 1.1E-22 168.6 19.5 252 64-351 51-313 (353)
61 3o53_A Protein LRIM1, AGAP0063 99.8 2.1E-19 7.1E-24 174.3 10.2 106 311-419 140-248 (317)
62 3g06_A SSPH2 (leucine-rich rep 99.8 1.1E-17 3.9E-22 175.0 23.5 253 127-446 41-294 (622)
63 2z80_A TOLL-like receptor 2, v 99.8 1.7E-18 5.7E-23 170.8 16.0 226 291-527 76-313 (353)
64 1ozn_A Reticulon 4 receptor; N 99.8 3.3E-18 1.1E-22 163.3 17.1 201 289-502 30-235 (285)
65 3g06_A SSPH2 (leucine-rich rep 99.8 1.2E-17 4.2E-22 174.8 21.0 233 65-396 61-293 (622)
66 2z66_A Variable lymphocyte rec 99.8 8.6E-18 2.9E-22 162.2 15.4 202 291-507 52-262 (306)
67 3oja_A Leucine-rich immune mol 99.8 8.3E-18 2.8E-22 172.5 15.7 86 116-209 24-109 (487)
68 1ozn_A Reticulon 4 receptor; N 99.8 1E-17 3.5E-22 159.9 15.2 218 294-527 14-237 (285)
69 2xwt_C Thyrotropin receptor; s 99.7 1.8E-17 6E-22 153.8 14.1 199 316-528 32-239 (239)
70 3o53_A Protein LRIM1, AGAP0063 99.7 1.1E-17 3.8E-22 162.1 13.0 212 291-527 34-249 (317)
71 3oja_A Leucine-rich immune mol 99.7 3.2E-17 1.1E-21 168.2 13.0 213 291-528 34-250 (487)
72 1wwl_A Monocyte differentiatio 99.7 9.6E-18 3.3E-22 162.1 8.0 202 313-527 93-308 (312)
73 2z62_A TOLL-like receptor 4, v 99.7 2.7E-16 9.2E-21 149.2 15.7 131 289-419 26-160 (276)
74 1wwl_A Monocyte differentiatio 99.7 2.4E-18 8.1E-23 166.4 1.3 177 291-506 121-309 (312)
75 2o6q_A Variable lymphocyte rec 99.7 6.1E-16 2.1E-20 146.1 16.2 177 290-502 36-215 (270)
76 4ay9_X Follicle-stimulating ho 99.7 1.2E-15 4.1E-20 149.9 18.1 224 288-526 27-257 (350)
77 2z62_A TOLL-like receptor 4, v 99.7 5.3E-16 1.8E-20 147.2 14.4 198 315-526 28-235 (276)
78 2xwt_C Thyrotropin receptor; s 99.7 9.1E-16 3.1E-20 142.2 13.6 198 290-504 30-238 (239)
79 1p9a_G Platelet glycoprotein I 99.7 2.2E-15 7.4E-20 143.6 16.5 191 257-478 12-205 (290)
80 4glp_A Monocyte differentiatio 99.6 6.6E-16 2.3E-20 149.1 12.7 225 292-527 65-306 (310)
81 2o6q_A Variable lymphocyte rec 99.6 2.3E-15 7.7E-20 142.2 15.8 194 292-526 17-216 (270)
82 1p9a_G Platelet glycoprotein I 99.6 1.9E-15 6.5E-20 144.0 15.2 193 291-502 10-205 (290)
83 1h6u_A Internalin H; cell adhe 99.6 1.5E-15 5E-20 146.3 12.6 193 291-510 41-234 (308)
84 3rfs_A Internalin B, repeat mo 99.6 7.8E-15 2.7E-19 138.6 14.8 90 291-387 157-246 (272)
85 3rfs_A Internalin B, repeat mo 99.6 1E-14 3.6E-19 137.7 14.0 149 291-446 63-215 (272)
86 4glp_A Monocyte differentiatio 99.6 1.9E-15 6.5E-20 145.9 8.9 176 291-506 117-307 (310)
87 2ast_B S-phase kinase-associat 99.6 3E-16 1E-20 153.5 3.3 199 292-502 71-282 (336)
88 1h6u_A Internalin H; cell adhe 99.6 1.4E-14 4.7E-19 139.5 13.5 192 256-486 42-234 (308)
89 4ay9_X Follicle-stimulating ho 99.6 2.2E-14 7.7E-19 140.8 15.1 220 65-323 30-254 (350)
90 3m19_A Variable lymphocyte rec 99.6 3.7E-14 1.3E-18 132.3 13.8 171 257-446 16-189 (251)
91 2ast_B S-phase kinase-associat 99.5 3.1E-15 1.1E-19 146.3 6.3 203 126-373 70-282 (336)
92 3m19_A Variable lymphocyte rec 99.5 4.2E-14 1.4E-18 131.9 12.1 170 316-501 15-188 (251)
93 3goz_A Leucine-rich repeat-con 99.5 2.9E-14 9.8E-19 140.8 7.3 119 86-210 15-149 (362)
94 2ca6_A RAN GTPase-activating p 99.5 3.3E-15 1.1E-19 149.1 -0.7 235 255-507 32-317 (386)
95 2ca6_A RAN GTPase-activating p 99.5 3.1E-15 1.1E-19 149.2 -1.2 182 291-479 94-314 (386)
96 1h6t_A Internalin B; cell adhe 99.5 2.1E-13 7.3E-18 129.9 11.3 175 311-510 42-217 (291)
97 3goz_A Leucine-rich repeat-con 99.5 4.7E-15 1.6E-19 146.4 -0.3 233 288-527 19-296 (362)
98 4ezg_A Putative uncharacterize 99.4 3.6E-13 1.2E-17 120.4 10.0 149 336-526 41-192 (197)
99 1h6t_A Internalin B; cell adhe 99.4 6.7E-13 2.3E-17 126.4 12.5 169 13-232 42-210 (291)
100 4ezg_A Putative uncharacterize 99.4 1.4E-12 4.9E-17 116.5 12.0 145 292-446 45-191 (197)
101 1m9s_A Internalin B; cell inva 99.4 1.1E-12 3.6E-17 137.3 12.0 175 311-510 39-214 (605)
102 3cvr_A Invasion plasmid antige 99.4 3.9E-12 1.3E-16 131.6 13.0 91 126-231 59-149 (571)
103 2o6s_A Variable lymphocyte rec 99.4 3.3E-12 1.1E-16 115.3 11.0 159 291-492 28-189 (208)
104 3cvr_A Invasion plasmid antige 99.3 7.1E-12 2.4E-16 129.6 14.8 180 292-502 60-240 (571)
105 2o6s_A Variable lymphocyte rec 99.3 4.3E-12 1.5E-16 114.5 10.7 147 255-419 28-176 (208)
106 2v9t_B SLIT homolog 2 protein 99.3 1.1E-11 3.9E-16 112.6 13.3 130 289-419 30-163 (220)
107 1m9s_A Internalin B; cell inva 99.3 2.6E-12 8.9E-17 134.4 10.1 170 291-485 43-213 (605)
108 2xot_A Amphoterin-induced prot 99.3 4E-12 1.4E-16 125.2 10.7 154 289-447 37-200 (361)
109 1xeu_A Internalin C; cellular 99.3 8.6E-13 2.9E-17 123.6 5.0 140 292-446 20-160 (263)
110 1xeu_A Internalin C; cellular 99.3 2.7E-12 9.4E-17 120.2 7.4 172 313-510 17-189 (263)
111 3e6j_A Variable lymphocyte rec 99.3 2.5E-11 8.5E-16 111.2 13.6 97 343-446 23-122 (229)
112 2xot_A Amphoterin-induced prot 99.3 6.7E-12 2.3E-16 123.6 9.3 98 318-419 21-123 (361)
113 3e6j_A Variable lymphocyte rec 99.3 3.8E-11 1.3E-15 109.9 13.6 129 289-419 38-170 (229)
114 3sb4_A Hypothetical leucine ri 99.3 3.9E-11 1.3E-15 116.6 13.7 78 435-524 225-306 (329)
115 2v70_A SLIT-2, SLIT homolog 2 99.3 3.3E-11 1.1E-15 109.5 12.3 130 290-419 31-164 (220)
116 2v9t_B SLIT homolog 2 protein 99.2 4.3E-11 1.5E-15 108.8 11.4 127 315-446 32-162 (220)
117 3sb4_A Hypothetical leucine ri 99.2 6.4E-11 2.2E-15 115.0 13.1 107 291-401 202-312 (329)
118 2v70_A SLIT-2, SLIT homolog 2 99.2 1.1E-10 3.6E-15 106.2 12.4 109 291-399 57-166 (220)
119 2ell_A Acidic leucine-rich nuc 99.2 3.5E-11 1.2E-15 104.5 8.7 135 363-510 24-164 (168)
120 1dce_A Protein (RAB geranylger 99.2 2.1E-13 7.1E-18 141.8 -7.7 196 291-521 349-566 (567)
121 2ell_A Acidic leucine-rich nuc 99.1 6E-11 2.1E-15 102.9 6.4 130 315-447 24-158 (168)
122 2je0_A Acidic leucine-rich nuc 99.1 8.6E-11 2.9E-15 99.7 7.0 125 364-500 18-148 (149)
123 2je0_A Acidic leucine-rich nuc 99.1 5.9E-11 2E-15 100.7 4.7 103 315-419 17-124 (149)
124 1dce_A Protein (RAB geranylger 99.1 2.7E-12 9.4E-17 133.4 -5.7 100 292-396 442-542 (567)
125 1w8a_A SLIT protein; signaling 99.0 1.3E-09 4.4E-14 96.7 11.2 107 290-396 28-135 (192)
126 1a9n_A U2A', U2A'; complex (nu 99.0 2.4E-10 8.3E-15 99.9 5.5 105 409-529 43-154 (176)
127 4fdw_A Leucine rich hypothetic 99.0 3.6E-08 1.2E-12 97.8 21.6 255 91-419 111-381 (401)
128 4fs7_A Uncharacterized protein 99.0 1.9E-08 6.6E-13 100.1 19.7 64 84-159 62-126 (394)
129 1a9n_A U2A', U2A'; complex (nu 99.0 5.4E-10 1.9E-14 97.6 7.0 103 65-184 42-151 (176)
130 4fdw_A Leucine rich hypothetic 99.0 2.5E-08 8.4E-13 99.0 19.2 213 292-526 158-381 (401)
131 4b8c_D Glucose-repressible alc 99.0 1.6E-10 5.3E-15 124.1 2.8 117 306-426 215-333 (727)
132 2wfh_A SLIT homolog 2 protein 99.0 3.9E-09 1.3E-13 93.5 11.4 106 290-396 30-135 (193)
133 4b8c_D Glucose-repressible alc 98.9 3.2E-10 1.1E-14 121.6 4.0 111 85-210 216-327 (727)
134 2wfh_A SLIT homolog 2 protein 98.9 4.7E-09 1.6E-13 93.0 10.5 105 407-526 30-137 (193)
135 4fs7_A Uncharacterized protein 98.9 1.7E-07 5.8E-12 93.2 22.8 128 61-209 67-195 (394)
136 2o6r_A Variable lymphocyte rec 98.9 1.1E-08 3.8E-13 89.3 11.3 82 291-373 28-110 (177)
137 1w8a_A SLIT protein; signaling 98.9 9.9E-09 3.4E-13 90.9 10.6 86 291-376 54-139 (192)
138 1ds9_A Outer arm dynein; leuci 98.8 3.3E-11 1.1E-15 107.7 -7.0 10 489-498 171-180 (198)
139 2o6r_A Variable lymphocyte rec 98.8 2.6E-08 8.9E-13 86.9 11.3 104 315-419 28-135 (177)
140 1ds9_A Outer arm dynein; leuci 98.8 5.5E-10 1.9E-14 99.7 -1.1 123 292-419 24-151 (198)
141 4gt6_A Cell surface protein; l 98.6 9.4E-06 3.2E-10 80.5 23.6 104 310-418 260-367 (394)
142 3g39_A Variable lymphocyte rec 98.6 1.8E-07 6.3E-12 80.8 9.0 83 291-374 30-113 (170)
143 4gt6_A Cell surface protein; l 98.5 1.4E-05 4.9E-10 79.2 22.5 102 383-501 284-387 (394)
144 2r9u_A Variable lymphocyte rec 98.5 3.4E-07 1.1E-11 79.4 9.1 80 315-396 33-114 (174)
145 3g39_A Variable lymphocyte rec 98.5 4.1E-07 1.4E-11 78.5 8.4 100 293-396 11-111 (170)
146 2r9u_A Variable lymphocyte rec 98.4 5.5E-07 1.9E-11 78.0 9.0 83 291-374 33-116 (174)
147 3e4g_A ATP synthase subunit S, 98.4 1.7E-07 5.8E-12 80.0 4.6 90 65-165 61-154 (176)
148 3un9_A NLR family member X1; l 98.3 3.4E-08 1.2E-12 96.9 -2.7 59 291-349 72-136 (372)
149 3e4g_A ATP synthase subunit S, 98.3 1.1E-06 3.7E-11 75.0 6.3 91 16-141 60-154 (176)
150 2ra8_A Uncharacterized protein 98.2 1.2E-06 4.2E-11 85.1 6.7 36 466-502 277-317 (362)
151 2ifg_A High affinity nerve gro 98.1 7.6E-06 2.6E-10 79.7 8.9 84 291-375 31-115 (347)
152 4h09_A Hypothetical leucine ri 98.1 0.00081 2.8E-08 66.1 23.7 77 65-159 46-122 (379)
153 2ra8_A Uncharacterized protein 98.0 5.6E-06 1.9E-10 80.4 7.0 141 381-527 166-319 (362)
154 2ifg_A High affinity nerve gro 98.0 1.4E-05 4.7E-10 77.8 9.7 102 295-399 12-116 (347)
155 3un9_A NLR family member X1; l 98.0 9.5E-08 3.2E-12 93.8 -6.1 171 314-507 71-253 (372)
156 4h09_A Hypothetical leucine ri 97.8 0.0055 1.9E-07 60.1 24.3 104 60-184 64-169 (379)
157 1io0_A Tropomodulin; LRR prote 97.4 3.2E-05 1.1E-09 67.5 1.0 93 88-184 31-134 (185)
158 1io0_A Tropomodulin; LRR prote 97.2 0.00012 4.1E-09 63.8 2.7 117 63-184 34-162 (185)
159 3rw6_A Nuclear RNA export fact 96.9 0.00064 2.2E-08 62.4 3.9 79 363-442 170-257 (267)
160 3rw6_A Nuclear RNA export fact 96.6 0.0012 4E-08 60.7 3.8 61 124-185 168-232 (267)
161 3rfe_A Platelet glycoprotein I 92.3 0.18 6.1E-06 40.4 5.1 33 493-526 32-66 (130)
162 3rfe_A Platelet glycoprotein I 91.4 0.29 9.9E-06 39.2 5.4 35 126-161 31-66 (130)
163 1pgv_A TMD-1, tropomodulin TMD 87.8 0.29 1E-05 42.2 2.9 68 90-161 38-109 (197)
164 1pgv_A TMD-1, tropomodulin TMD 87.8 0.45 1.5E-05 41.1 4.1 93 63-160 39-136 (197)
165 2lz0_A Uncharacterized protein 31.3 63 0.0022 23.9 4.5 13 489-501 40-52 (100)
166 2lz0_A Uncharacterized protein 21.6 1E+02 0.0035 22.7 4.1 37 61-102 16-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.3e-37 Score=333.89 Aligned_cols=484 Identities=17% Similarity=0.125 Sum_probs=269.1
Q ss_pred CCCccCccEEeecCCCceEeeccCCccCcccceeeecCCcceeecCCC--CCCCCCccEEEeccccCccEEeccCchhhh
Q 035732 13 VSSLPAFCKLEIDGCKKVLWRSATDHLGSQNSVVCRDASNQVFLAGPL--KPRIPKLEELEIKNIKNETYIWKSHDELLQ 90 (559)
Q Consensus 13 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 90 (559)
+..+++|++|++++|........ ..+...+.+.... .- +.+.. ...+++|++|+++++. ++. ..+..++
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~~-~~l~~L~~L~Ls~---n~-l~~~~~~l~~l~~L~~L~Ls~n~-l~~---~~~~~l~ 244 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVDV-SRCVNLEFLDVSS---NN-FSTGIPFLGDCSALQHLDISGNK-LSG---DFSRAIS 244 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCBC-TTCTTCCEEECCS---SC-CCSCCCBCTTCCSCCEEECCSSC-CCS---CHHHHTT
T ss_pred hccCCCCCEEECCCCcccccCCc-ccCCcCCEEECcC---Cc-CCCCCcccccCCCCCEEECcCCc-CCC---cccHHHh
Confidence 67888888888888864432221 1122222221111 10 11111 2356777777777763 332 3345567
Q ss_pred ccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccCCCCCCC-CccceeeccCCCCccccC-C
Q 035732 91 DICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLPQSSFSL-SSLREIEIYNCSSLVSFP-E 168 (559)
Q Consensus 91 ~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~~~~~~l-~~L~~L~l~~~~~~~~~~-~ 168 (559)
.+++|++|++++| .+....+. . .+ ++|++|++++|.....+|..+... ++|++|++++|.....+| .
T Consensus 245 ~l~~L~~L~Ls~n-~l~~~~~~-----~-~l----~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~ 313 (768)
T 3rgz_A 245 TCTELKLLNISSN-QFVGPIPP-----L-PL----KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 313 (768)
T ss_dssp TCSSCCEEECCSS-CCEESCCC-----C-CC----TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG
T ss_pred cCCCCCEEECCCC-cccCccCc-----c-cc----CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH
Confidence 7777777777776 33322221 0 22 666666666665433556555543 666666666665444444 2
Q ss_pred CCCCCCccEEEecccCCCcccCcccccCCCCCccEEecCCCCCccccccc-cCC-CCcceEEee----------------
Q 035732 169 VALPSKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCRWLTFIAAV-QLP-SSLKKLQIR---------------- 230 (559)
Q Consensus 169 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~-~~L~~L~l~---------------- 230 (559)
+..+++|++|++++|.....+|...+ ..+++|++|++++|.....++.. ... ++|+.|+++
T Consensus 314 ~~~l~~L~~L~L~~n~l~~~ip~~~l-~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~ 392 (768)
T 3rgz_A 314 FGSCSLLESLALSSNNFSGELPMDTL-LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNP 392 (768)
T ss_dssp GGGCTTCCEEECCSSEEEEECCHHHH-TTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCST
T ss_pred HhcCCCccEEECCCCcccCcCCHHHH-hcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcc
Confidence 55566666666666653334444311 33455666666655322222222 111 244444444
Q ss_pred ----------cccCccccchhhccccccccccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEcC
Q 035732 231 ----------RCDNIRTLTAEEGIQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYG 300 (559)
Q Consensus 231 ----------~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~ 300 (559)
+|.....++..+.. ++ +|++|++++ +.++ +..|..+. .+ ++|+.|++++
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~-------l~--~L~~L~Ls~-N~l~-----~~~p~~l~-----~l-~~L~~L~L~~ 451 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSN-------CS--ELVSLHLSF-NYLS-----GTIPSSLG-----SL-SKLRDLKLWL 451 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGG-------CT--TCCEEECCS-SEEE-----SCCCGGGG-----GC-TTCCEEECCS
T ss_pred cCCccEEECCCCccccccCHHHhc-------CC--CCCEEECcC-Cccc-----CcccHHHh-----cC-CCCCEEECCC
Confidence 43211122222211 11 266666655 2333 22233332 22 4677777777
Q ss_pred CCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEeccccccccccc
Q 035732 301 CSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALP 380 (559)
Q Consensus 301 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 380 (559)
|.....+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.....+|..+..+++|+.|++++|.....+|
T Consensus 452 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 531 (768)
T 3rgz_A 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred CcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCC
Confidence 76666666667777777777777777666667777777777777777776555666666666677777777777666677
Q ss_pred cccccCCCcceEEecC-CCC-CCc--------------------------------------------------------
Q 035732 381 KGLHNLTSLQHLTIGG-ALP-SLE-------------------------------------------------------- 402 (559)
Q Consensus 381 ~~l~~l~~L~~L~l~~-~l~-~~~-------------------------------------------------------- 402 (559)
..+..+++|+.|++++ .+. .+|
T Consensus 532 ~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 611 (768)
T 3rgz_A 532 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTC
T ss_pred HHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccc
Confidence 7777777777777765 221 111
Q ss_pred ---------------CCCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCCCceeecccccccccccccc
Q 035732 403 ---------------EDGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTALPLL 467 (559)
Q Consensus 403 ---------------~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l 467 (559)
....+++|++|++++|. ++..++. .+..+++|+.|++++|.. ...+|. .+..+
T Consensus 612 ~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~-l~g~ip~---~l~~l~~L~~L~Ls~N~l-~g~ip~-------~l~~L 679 (768)
T 3rgz_A 612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM-LSGYIPK---EIGSMPYLFILNLGHNDI-SGSIPD-------EVGDL 679 (768)
T ss_dssp CSCTTSCEEEEECCCSCSSSBCCCEEECCSSC-CBSCCCG---GGGGCTTCCEEECCSSCC-CSCCCG-------GGGGC
T ss_pred ccccccceecccCchhhhccccccEEECcCCc-ccccCCH---HHhccccCCEEeCcCCcc-CCCCCh-------HHhCC
Confidence 01224567778888777 4444443 577788888888887642 113333 26667
Q ss_pred cccceeeccccccccccccccccCCCcCeEEecCCCCCcccCCCCCCCCceEEEecCChhhh----hhhhccCccccccc
Q 035732 468 ASLTSLGISRFPNLERLSSSIVDLQNLTLLQLWGCPKLKYFPKKGLPSSLLELDIVGCPLIE----EKCRKDGGQYWDLL 543 (559)
Q Consensus 468 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~----~~~~~~~~~~~~~~ 543 (559)
++|+.|++++|.....+|..+..+++|++|++++|+--..+|..+.+.++....+.+|+.+- ..|....+++|+++
T Consensus 680 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~ 759 (768)
T 3rgz_A 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHH 759 (768)
T ss_dssp TTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC-------
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCC
Confidence 88888888886655577877788888888888885433457765555566666666766532 25777888999999
Q ss_pred CCCceeE
Q 035732 544 THIPYVL 550 (559)
Q Consensus 544 ~~~~~~~ 550 (559)
+|++..+
T Consensus 760 ~~~~~~~ 766 (768)
T 3rgz_A 760 QRSHHHH 766 (768)
T ss_dssp -------
T ss_pred CCccccC
Confidence 9998654
No 2
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.1e-34 Score=308.58 Aligned_cols=202 Identities=19% Similarity=0.108 Sum_probs=108.8
Q ss_pred CCccEEEEcCCCCccchHHhhccCCCCceEEeeecCcccccccc-CCCCCccceeecccccCceec--CCCCCCCCCccE
Q 035732 291 PSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSG-LHNLRQLQEISIQICENLVSF--PEGGLPCAKLTR 367 (559)
Q Consensus 291 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~ 367 (559)
++|++|++++|......+..+..+++|++|++++|.....++.. +..+++|++|++++|...... +..+..+++|+.
T Consensus 301 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 380 (606)
T 3t6q_A 301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQS 380 (606)
T ss_dssp TTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCE
T ss_pred ccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCE
Confidence 46777777776655555556666777777777766655444332 566666777776666443322 444555566666
Q ss_pred EeccccccccccccccccCCCcceEEecC-CCCCCcC---CCCCCCCceeeecCccchhhhhhhcccccccCccccEEEE
Q 035732 368 LEIYDCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEE---DGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTI 443 (559)
Q Consensus 368 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l 443 (559)
|++++|......|..+..+++|+.|++++ .+..... ...+++|++|++++|. +....+ ..+..+++|++|++
T Consensus 381 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~---~~~~~l~~L~~L~L 456 (606)
T 3t6q_A 381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL-LDISSE---QLFDGLPALQHLNL 456 (606)
T ss_dssp EECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC-CBTTCT---TTTTTCTTCCEEEC
T ss_pred EECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc-cCCcCH---HHHhCCCCCCEEEC
Confidence 66666655444455566666666666666 3333211 3345566666666665 332222 24555666666666
Q ss_pred eecCCCceeecccccccccccccccccceeeccccccccccccccccCCCcCeEEecC
Q 035732 444 SRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSSSIVDLQNLTLLQLWG 501 (559)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~ 501 (559)
++|......++... .+..+++|+.|++++|......|..+..+++|++|++++
T Consensus 457 ~~n~l~~~~~~~~~-----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 509 (606)
T 3t6q_A 457 QGNHFPKGNIQKTN-----SLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH 509 (606)
T ss_dssp TTCBCGGGEECSSC-----GGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCCCCCccccccch-----hhccCCCccEEECCCCccCccChhhhccccCCCEEECCC
Confidence 65532211121111 244455555555555432222344445555555555555
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.9e-35 Score=321.58 Aligned_cols=419 Identities=17% Similarity=0.106 Sum_probs=273.1
Q ss_pred CCCCccEEEeccccCccEEeccCchhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCccc
Q 035732 63 RIPKLEELEIKNIKNETYIWKSHDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKL 142 (559)
Q Consensus 63 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~ 142 (559)
.+++|++|+++++. +.. ..+...+..+++|++|++++| .++...+..+ ..+..+ ++|++|++++|......
T Consensus 124 ~l~~L~~L~Ls~n~-l~~--~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~~~~l----~~L~~L~Ls~n~l~~~~ 194 (768)
T 3rgz_A 124 SCSGLKFLNVSSNT-LDF--PGKVSGGLKLNSLEVLDLSAN-SISGANVVGW-VLSDGC----GELKHLAISGNKISGDV 194 (768)
T ss_dssp GCTTCCEEECCSSE-EEC--CSSCCSCCCCTTCSEEECCSS-CCEEETHHHH-HHTTCC----TTCCEEECCSSEEESCC
T ss_pred CCCCCCEEECcCCc-cCC--cCCHHHhccCCCCCEEECCCC-ccCCcCChhh-hhhccC----CCCCEEECCCCcccccC
Confidence 46777777777662 221 133333366777777777775 4554433211 113444 77788888777543222
Q ss_pred CCCCCCCCccceeeccCCCCccccCCCCCCCCccEEEecccCCCcccCcccccCCCCCccEEecCCCCCccccccccCCC
Q 035732 143 PQSSFSLSSLREIEIYNCSSLVSFPEVALPSKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCRWLTFIAAVQLPS 222 (559)
Q Consensus 143 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 222 (559)
| +..+++|++|++++|.....+|.+..+++|++|++++|.....+|..+ ..+++|++|++++|.....++.. .++
T Consensus 195 ~--~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l--~~l~~L~~L~Ls~n~l~~~~~~~-~l~ 269 (768)
T 3rgz_A 195 D--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAI--STCTELKLLNISSNQFVGPIPPL-PLK 269 (768)
T ss_dssp B--CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHT--TTCSSCCEEECCSSCCEESCCCC-CCT
T ss_pred C--cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHH--hcCCCCCEEECCCCcccCccCcc-ccC
Confidence 2 367778888888877666666667777888888888877544555443 44577888888877543333333 567
Q ss_pred CcceEEeecccCccccchhhccccccccccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEcCCC
Q 035732 223 SLKKLQIRRCDNIRTLTAEEGIQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCS 302 (559)
Q Consensus 223 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~~~ 302 (559)
+|++|+++++.-...++...... + ++|++|++++ +.++. ..|..+.. + ++|++|++++|.
T Consensus 270 ~L~~L~L~~n~l~~~ip~~~~~~------~--~~L~~L~Ls~-n~l~~-----~~p~~~~~-----l-~~L~~L~L~~n~ 329 (768)
T 3rgz_A 270 SLQYLSLAENKFTGEIPDFLSGA------C--DTLTGLDLSG-NHFYG-----AVPPFFGS-----C-SLLESLALSSNN 329 (768)
T ss_dssp TCCEEECCSSEEEESCCCCSCTT------C--TTCSEEECCS-SEEEE-----CCCGGGGG-----C-TTCCEEECCSSE
T ss_pred CCCEEECcCCccCCccCHHHHhh------c--CcCCEEECcC-CcCCC-----ccchHHhc-----C-CCccEEECCCCc
Confidence 78888887754332444433321 1 2488888887 34442 23334433 3 578888888877
Q ss_pred CccchHHh-hccCCCCceEEeeecCccccccccCCCCC-ccceeecccccCceecCCCCCC--CCCccEEeccccccccc
Q 035732 303 KVESIAER-LDNNTSLEKISIKRCGTLKILPSGLHNLR-QLQEISIQICENLVSFPEGGLP--CAKLTRLEIYDCKRLEA 378 (559)
Q Consensus 303 ~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~ 378 (559)
....+|.. +..+++|++|++++|.+.+.+|..+..++ +|++|++++|.....++..... +++|+.|++++|.....
T Consensus 330 l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 409 (768)
T 3rgz_A 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409 (768)
T ss_dssp EEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE
T ss_pred ccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccc
Confidence 65455543 77888888888888877767777777766 8888888888665566655444 56788888888877767
Q ss_pred cccccccCCCcceEEecC-CCCC-CcC-CCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCCCceeecc
Q 035732 379 LPKGLHNLTSLQHLTIGG-ALPS-LEE-DGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPL 455 (559)
Q Consensus 379 ~~~~l~~l~~L~~L~l~~-~l~~-~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 455 (559)
+|..+..+++|+.|++++ .+.. ++. ...+++|++|++++|. +...++. .+..+++|+.|++++|... ..++.
T Consensus 410 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~---~~~~l~~L~~L~L~~N~l~-~~~p~ 484 (768)
T 3rgz_A 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM-LEGEIPQ---ELMYVKTLETLILDFNDLT-GEIPS 484 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CCSCCCG---GGGGCTTCCEEECCSSCCC-SCCCG
T ss_pred cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCc-ccCcCCH---HHcCCCCceEEEecCCccc-CcCCH
Confidence 788888888888888887 5542 222 4556788888888887 4433332 5777888888888887421 12222
Q ss_pred cccccccccccccccceeeccccccccccccccccCCCcCeEEecCCCCCcccCCC-CCCCCceEEEecCChh
Q 035732 456 ENKRLGTALPLLASLTSLGISRFPNLERLSSSIVDLQNLTLLQLWGCPKLKYFPKK-GLPSSLLELDIVGCPL 527 (559)
Q Consensus 456 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~ 527 (559)
.+..+++|+.|++++|.....+|.++..+++|++|++++|+-...+|.. .-+++|+.|++++|+.
T Consensus 485 -------~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 485 -------GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp -------GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred -------HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 2667788888888886655577877888888888888885433345552 2257888888888754
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.2e-34 Score=302.87 Aligned_cols=416 Identities=19% Similarity=0.180 Sum_probs=280.5
Q ss_pred CCCCCccEEEeccccCccEEeccCchhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcc
Q 035732 62 PRIPKLEELEIKNIKNETYIWKSHDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVK 141 (559)
Q Consensus 62 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~ 141 (559)
..+++|++|+++++ .++. +.+..++.+++|++|+++++ .++.+.+. .+..+ ++|++|++++|.....
T Consensus 78 ~~l~~L~~L~Ls~n-~l~~---~~~~~~~~l~~L~~L~L~~n-~i~~l~~~----~~~~l----~~L~~L~L~~n~l~~~ 144 (606)
T 3t6q_A 78 QSQHRLDTLVLTAN-PLIF---MAETALSGPKALKHLFFIQT-GISSIDFI----PLHNQ----KTLESLYLGSNHISSI 144 (606)
T ss_dssp TTCTTCCEEECTTC-CCSE---ECTTTTSSCTTCCEEECTTS-CCSCGGGS----CCTTC----TTCCEEECCSSCCCCC
T ss_pred cCccccCeeeCCCC-cccc---cChhhhcccccccEeecccc-CcccCCcc----hhccC----CcccEEECCCCccccc
Confidence 35677777777766 3444 44555667777777777765 55555333 23444 6777777777655321
Q ss_pred cCCCCCCCCccceeeccCCCCccccC-CCCCCCCcc--EEEecccCCCcccCcccccCCCC-------------------
Q 035732 142 LPQSSFSLSSLREIEIYNCSSLVSFP-EVALPSKLK--KIRISYCGALKSLPEAWMCDTNS------------------- 199 (559)
Q Consensus 142 ~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~--~L~l~~~~~~~~~~~~~~~~~~~------------------- 199 (559)
.+..+..+++|++|++++|......+ .+..+++|+ +|++++|......+.. ....
T Consensus 145 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~ 221 (606)
T 3t6q_A 145 KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA---FDSAVFQSLNFGGTQNLLVIFKG 221 (606)
T ss_dssp CCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTT---TTTCEEEEEECTTCSCHHHHHHH
T ss_pred CcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhH---hhhccccccccCCchhHHHHhhh
Confidence 11223347777777777764333222 255566666 6666666533322222 1112
Q ss_pred ---------------------------------CccEEecCCCCCccccccc--cCCCCcceEEeecccCccccchhhcc
Q 035732 200 ---------------------------------SLEILNIEHCRWLTFIAAV--QLPSSLKKLQIRRCDNIRTLTAEEGI 244 (559)
Q Consensus 200 ---------------------------------~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~ 244 (559)
+|++|++++|. ++.++.. ..+++|+.|+++++ .++.+|..+..
T Consensus 222 l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~~l~~ 299 (606)
T 3t6q_A 222 LKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY-FFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVG 299 (606)
T ss_dssp TTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCC-CSSCCTTTTTTCTTCSEEECTTS-CCSCCCSSCCS
T ss_pred ccccchhheechhhccccccccChhHhchhhcCceeEEEeecCc-cCccCHHHhccccCCCEEeccCC-ccCCCChhhcc
Confidence 45555555553 3333322 44567777777774 45555554332
Q ss_pred ccccccccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEcCCCCccchH-HhhccCCCCceEEee
Q 035732 245 QCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKVESIA-ERLDNNTSLEKISIK 323 (559)
Q Consensus 245 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~ 323 (559)
+ ++|++|++++ +.+.. .+ +..+ ..+ ++|++|++++|.....++ ..+..+++|++|+++
T Consensus 300 -------l--~~L~~L~l~~-n~l~~-~~----~~~~-----~~l-~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 358 (606)
T 3t6q_A 300 -------L--STLKKLVLSA-NKFEN-LC----QISA-----SNF-PSLTHLSIKGNTKRLELGTGCLENLENLRELDLS 358 (606)
T ss_dssp -------C--TTCCEEECTT-CCCSB-GG----GGCG-----GGC-TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECC
T ss_pred -------c--ccCCEEECcc-CCcCc-Cc----hhhh-----hcc-CcCCEEECCCCCcccccchhhhhccCcCCEEECC
Confidence 2 2388888887 34443 11 1222 334 689999999997764444 458899999999999
Q ss_pred ecCccccc--cccCCCCCccceeecccccCceecCCCCCCCCCccEEecccccccccccc-ccccCCCcceEEecC-CCC
Q 035732 324 RCGTLKIL--PSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALPK-GLHNLTSLQHLTIGG-ALP 399 (559)
Q Consensus 324 ~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~-~l~ 399 (559)
+|.+.... +..+..+++|++|++++|......+..+..+++|+.|++++|......+. .+..+++|+.|++++ .+.
T Consensus 359 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 438 (606)
T 3t6q_A 359 HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD 438 (606)
T ss_dssp SSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCB
T ss_pred CCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccC
Confidence 99877654 67789999999999999976666666777888999999999986655544 489999999999999 666
Q ss_pred CCcC--CCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCCCceeecccccccccccccccccceeeccc
Q 035732 400 SLEE--DGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTALPLLASLTSLGISR 477 (559)
Q Consensus 400 ~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 477 (559)
..+. ...+++|++|++++|+ +.+........+..+++|+.|++++|. +..++.. .+..+++|+.|++++
T Consensus 439 ~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~------~~~~l~~L~~L~Ls~ 509 (606)
T 3t6q_A 439 ISSEQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFCD--LSSIDQH------AFTSLKMMNHVDLSH 509 (606)
T ss_dssp TTCTTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTSC--CCEECTT------TTTTCTTCCEEECCS
T ss_pred CcCHHHHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCCc--cCccChh------hhccccCCCEEECCC
Confidence 5433 5568999999999998 443211111357889999999999984 4445443 377889999999999
Q ss_pred cccccccccccccCCCcCeEEecCCCCCcccCCCCC--CCCceEEEecCChh
Q 035732 478 FPNLERLSSSIVDLQNLTLLQLWGCPKLKYFPKKGL--PSSLLELDIVGCPL 527 (559)
Q Consensus 478 ~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~ 527 (559)
|......|..+..+++| .|++++ +.++.+++..+ +++|+.|++++||.
T Consensus 510 N~l~~~~~~~l~~l~~L-~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 510 NRLTSSSIEALSHLKGI-YLNLAS-NHISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp SCCCGGGGGGGTTCCSC-EEECCS-SCCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred CccCcCChhHhCccccc-EEECcC-CcccccCHhhcccCCCCCEEeCCCCCc
Confidence 76555667778889999 999999 57877776433 57999999999875
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7.9e-33 Score=294.36 Aligned_cols=221 Identities=18% Similarity=0.103 Sum_probs=166.7
Q ss_pred CCccEEEEcCCCCccchHHhhccCCCCceEEeeecCcccc--ccccCCCCCccceeecccccCceecCCCCCCCCCccEE
Q 035732 291 PSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKI--LPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRL 368 (559)
Q Consensus 291 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 368 (559)
++|++|++++|...... .+..+++|++|++++|.+... .+..+..+++|++|++++|. +..+|..+..+++|+.|
T Consensus 328 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L 404 (606)
T 3vq2_A 328 PFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHL 404 (606)
T ss_dssp SSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEE
T ss_pred CccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCee
Confidence 56777777777544433 456778888888888776543 35667788888899888885 55677777778899999
Q ss_pred eccccccccccc-cccccCCCcceEEecC-CCCCCc-C-CCCCCCCceeeecCccchhh-hhhhcccccccCccccEEEE
Q 035732 369 EIYDCKRLEALP-KGLHNLTSLQHLTIGG-ALPSLE-E-DGLPTNLQLLNIEGNMEIWK-SMIERGRGFHRFSSLRRLTI 443 (559)
Q Consensus 369 ~l~~~~~~~~~~-~~l~~l~~L~~L~l~~-~l~~~~-~-~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~l~~L~~L~l 443 (559)
++++|......+ ..+..+++|+.|++++ .+.... . ...+++|++|++++|. +.+ ..+ ..+..+++|+.|++
T Consensus 405 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~---~~~~~l~~L~~L~L 480 (606)
T 3vq2_A 405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS-FKDNTLS---NVFANTTNLTFLDL 480 (606)
T ss_dssp ECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE-EGGGEEC---SCCTTCTTCCEEEC
T ss_pred ECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc-CCCcchH---HhhccCCCCCEEEC
Confidence 999987666555 5788899999999998 554432 2 5567899999999998 443 233 46889999999999
Q ss_pred eecCCCceeecccccccccccccccccceeeccccccccccccccccCCCcCeEEecCCCCCcccCCC--CCCCCceEEE
Q 035732 444 SRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSSSIVDLQNLTLLQLWGCPKLKYFPKK--GLPSSLLELD 521 (559)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~ 521 (559)
++|. +..++... +..+++|++|++++|......|..+..+++|++|++++| .++.+|.. .++.+|+.|+
T Consensus 481 s~n~--l~~~~~~~------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~ 551 (606)
T 3vq2_A 481 SKCQ--LEQISWGV------FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFN 551 (606)
T ss_dssp TTSC--CCEECTTT------TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEE
T ss_pred CCCc--CCccChhh------hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEE
Confidence 9984 44444433 778899999999997654455778888999999999994 68888884 2344799999
Q ss_pred ecCChh
Q 035732 522 IVGCPL 527 (559)
Q Consensus 522 l~~c~~ 527 (559)
+++||.
T Consensus 552 l~~N~~ 557 (606)
T 3vq2_A 552 LTNNSV 557 (606)
T ss_dssp CCSCCC
T ss_pred ccCCCc
Confidence 998865
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.5e-32 Score=300.17 Aligned_cols=474 Identities=16% Similarity=0.087 Sum_probs=285.6
Q ss_pred CccCccEEeecCCCceEeeccCCccCcccceeeecCCcceeecCCCCCCCCCccEEEeccccCccEEeccCchhhhccCC
Q 035732 15 SLPAFCKLEIDGCKKVLWRSATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHDELLQDICS 94 (559)
Q Consensus 15 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 94 (559)
..++|++|++++|......... +..+++|++|+++++..... +++..++.+++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~------------------------~~~l~~L~~LdLs~n~~~~~---i~~~~f~~L~~ 74 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASS------------------------FPFLEQLQLLELGSQYTPLT---IDKEAFRNLPN 74 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSS------------------------CSSCCSCSEEEECTTCCCCE---ECTTTTSSCTT
T ss_pred CCCCcCEEECCCCcCCccChhH------------------------CcccccCeEEeCCCCCCccc---cCHHHhcCCCC
Confidence 4589999999998766543332 23588888888888755444 66677788888
Q ss_pred CcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccCCC--CCCCCccceeeccCCCCccccC--CCC
Q 035732 95 LKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLPQS--SFSLSSLREIEIYNCSSLVSFP--EVA 170 (559)
Q Consensus 95 L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~ 170 (559)
|++|+|++| .++.+.++ .+..+ ++|++|++++|.....+|.. +..+++|++|++++|......+ .+.
T Consensus 75 L~~L~Ls~N-~l~~~~p~----~~~~l----~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~ 145 (844)
T 3j0a_A 75 LRILDLGSS-KIYFLHPD----AFQGL----FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG 145 (844)
T ss_dssp CCEEECTTC-CCCEECTT----SSCSC----SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGG
T ss_pred CCEEECCCC-cCcccCHh----HccCC----cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHh
Confidence 888888886 66666543 35556 88888888888664445544 7788888888888886544333 367
Q ss_pred CCCCccEEEecccCCCcccCcccccCCCCCccEEecCCCCCccccccc-cCCC------CcceEEeecccCccccchhhc
Q 035732 171 LPSKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCRWLTFIAAV-QLPS------SLKKLQIRRCDNIRTLTAEEG 243 (559)
Q Consensus 171 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~------~L~~L~l~~~~~l~~~~~~~~ 243 (559)
.+++|++|++++|......+..+.....++|+.|++++|......+.. ..++ +|+.|+++++.--...+..+.
T Consensus 146 ~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 225 (844)
T 3j0a_A 146 KLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFS 225 (844)
T ss_dssp TCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGG
T ss_pred hCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHH
Confidence 788888888888874444444332111156777787777543322221 1122 377777776521111111111
Q ss_pred cc-----------------------------cccccccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCCcc
Q 035732 244 IQ-----------------------------CSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLK 294 (559)
Q Consensus 244 ~~-----------------------------~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~ 294 (559)
.. ......+..++++.|++++ +.+.. .+ +..+ ..+ ++|+
T Consensus 226 ~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~-n~l~~-~~----~~~~-----~~l-~~L~ 293 (844)
T 3j0a_A 226 NAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSH-GFVFS-LN----SRVF-----ETL-KDLK 293 (844)
T ss_dssp GTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTT-CCCCE-EC----SCCS-----SSC-CCCC
T ss_pred hhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCC-Ccccc-cC----hhhh-----hcC-CCCC
Confidence 00 0011112223467777766 34443 11 1112 223 5777
Q ss_pred EEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecC-CCCCCCCCccEEecccc
Q 035732 295 SLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFP-EGGLPCAKLTRLEIYDC 373 (559)
Q Consensus 295 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~ 373 (559)
.|++++|......+..+..+++|++|++++|.+....+..+..+++|+.|++++|.. ..++ ..+..+++|+.|++++|
T Consensus 294 ~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 294 VLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI-AIIQDQTFKFLEKLQTLDLRDN 372 (844)
T ss_dssp EEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCC-CCCCSSCSCSCCCCCEEEEETC
T ss_pred EEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCC-CccChhhhcCCCCCCEEECCCC
Confidence 777777766665566677777777777777766665566677777777777777743 3333 34555667777777777
Q ss_pred ccccccccccccCCCcceEEecC-CCCCCcCC-----------------------CCCCCCceeeecCccchhhhhhhcc
Q 035732 374 KRLEALPKGLHNLTSLQHLTIGG-ALPSLEED-----------------------GLPTNLQLLNIEGNMEIWKSMIERG 429 (559)
Q Consensus 374 ~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~-----------------------~~~~~L~~L~l~~~~~l~~~~~~~~ 429 (559)
... .+ ..+++|+.|++++ .+..++.. ..+++|++|++++|. +......
T Consensus 373 ~l~-~i----~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~-- 444 (844)
T 3j0a_A 373 ALT-TI----HFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR-FSSCSGD-- 444 (844)
T ss_dssp CSC-CC----SSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCC-CCCCCSS--
T ss_pred CCC-cc----cCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCc-ccccccc--
Confidence 532 22 2255566666655 44443321 134555555555555 2221111
Q ss_pred cccccCccccEEEEeecCCCceeecccccccccccccccccceeecccccccccccc-ccccCCCcCeEEecCCCCCccc
Q 035732 430 RGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSS-SIVDLQNLTLLQLWGCPKLKYF 508 (559)
Q Consensus 430 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~l 508 (559)
..+..+++|+.|++++|.. ...+... .....+..+++|+.|++++| .++.++. .+..+++|++|++++ |+++.+
T Consensus 445 ~~~~~~~~L~~L~Ls~N~l--~~~~~~~-~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~l 519 (844)
T 3j0a_A 445 QTPSENPSLEQLFLGENML--QLAWETE-LCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNS-NRLTVL 519 (844)
T ss_dssp SSSCSCTTCCBCEEESCCC--SSSCCSC-CCSSCSSCBCCEECCCCCHH-HHTTCCTTSSSSCCSCSEEEEES-CCCSSC
T ss_pred cccccCCccccccCCCCcc--ccccccc-cchhhhcCcccccEEECCCC-cccccChhHccchhhhheeECCC-CCCCcc
Confidence 2234455666666665532 1111100 00123677899999999995 5666554 468899999999999 689999
Q ss_pred CCCCCCCCceEEEecCChhhhhhhhccCcccccccCCCceeEEeceEecC
Q 035732 509 PKKGLPSSLLELDIVGCPLIEEKCRKDGGQYWDLLTHIPYVLIAGKFVFG 558 (559)
Q Consensus 509 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (559)
+...++++|+.|++++|..-.- .-..+..+..+++.++++-.
T Consensus 520 ~~~~~~~~L~~L~Ls~N~l~~~--------~~~~~~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 520 SHNDLPANLEILDISRNQLLAP--------NPDVFVSLSVLDITHNKFIC 561 (844)
T ss_dssp CCCCCCSCCCEEEEEEECCCCC--------CSCCCSSCCEEEEEEECCCC
T ss_pred ChhhhhccccEEECCCCcCCCC--------ChhHhCCcCEEEecCCCccc
Confidence 9877778999999998753221 11123466777777776543
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.3e-32 Score=293.53 Aligned_cols=208 Identities=18% Similarity=0.164 Sum_probs=98.2
Q ss_pred HhhccCCCCceEEeeecCcccccc-ccCCCCCccceeecccccCceecCCCCCCCCCccEEeccccccc--ccccccccc
Q 035732 309 ERLDNNTSLEKISIKRCGTLKILP-SGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRL--EALPKGLHN 385 (559)
Q Consensus 309 ~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~l~~ 385 (559)
..+..+++|+.|++++|.+...++ ..+.++++|++|++++|......+..+..+++|+.|++++|... ...|..+..
T Consensus 399 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~ 478 (680)
T 1ziw_A 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTT
T ss_pred hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccccc
Confidence 334444444444444444333222 23344444444444444322222223334445555555544321 234445555
Q ss_pred CCCcceEEecC-CCCCCcC--CCCCCCCceeeecCccchhhhhhh-----cccccccCccccEEEEeecCCCceeecccc
Q 035732 386 LTSLQHLTIGG-ALPSLEE--DGLPTNLQLLNIEGNMEIWKSMIE-----RGRGFHRFSSLRRLTISRCDDDMVSFPLEN 457 (559)
Q Consensus 386 l~~L~~L~l~~-~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 457 (559)
+++|+.|++++ .+..++. ...+++|++|++++|. ++..... ....+..+++|+.|++++|. +..++.+.
T Consensus 479 l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~--l~~i~~~~ 555 (680)
T 1ziw_A 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESNG--FDEIPVEV 555 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC--CCCCCTTT
T ss_pred CCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCCC--CCCCCHHH
Confidence 55666666655 4444433 3344556666666655 3322110 00124555666666666552 33444322
Q ss_pred cccccccccccccceeeccccccccccccc-cccCCCcCeEEecCCCCCcccCCCC---CCCCceEEEecCChh
Q 035732 458 KRLGTALPLLASLTSLGISRFPNLERLSSS-IVDLQNLTLLQLWGCPKLKYFPKKG---LPSSLLELDIVGCPL 527 (559)
Q Consensus 458 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~l~~~~---~~~~L~~L~l~~c~~ 527 (559)
+..+++|+.|++++ +.++.+|.. +..+++|++|++++ +.++.++... .+++|+.+++++||.
T Consensus 556 ------~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~~L~~l~l~~N~~ 621 (680)
T 1ziw_A 556 ------FKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQK-NLITSVEKKVFGPAFRNLTELDMRFNPF 621 (680)
T ss_dssp ------TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTT-SCCCBCCHHHHHHHHTTCSEEECTTCCC
T ss_pred ------cccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCC-CcCCccChhHhcccccccCEEEccCCCc
Confidence 55556666666655 345555443 34556666666666 3555555422 234666666666553
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1e-31 Score=289.64 Aligned_cols=349 Identities=17% Similarity=0.141 Sum_probs=236.6
Q ss_pred ccceeeccCCCCccccC-CCCCCC--CccEEEecccCCCcccCcccccCCCCCccEEecCCCCCcccccc-ccCCCCcce
Q 035732 151 SLREIEIYNCSSLVSFP-EVALPS--KLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCRWLTFIAA-VQLPSSLKK 226 (559)
Q Consensus 151 ~L~~L~l~~~~~~~~~~-~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~ 226 (559)
+|++|++++|......+ .+..++ +|++|++++|. +..++...+ ..+++|++|++++|......+. ...+++|+.
T Consensus 223 ~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 300 (680)
T 1ziw_A 223 SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN-LNVVGNDSF-AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC-CCEECTTTT-TTCTTCCEEECCSCCBSEECTTTTTTCTTCCE
T ss_pred cccEEEccCCcccccChhHhhccCcCCCCEEECCCCC-cCccCcccc-cCcccccEeeCCCCccCccChhhhcCCCCccE
Confidence 44555555553333333 233443 49999999987 444443322 4568999999999854333332 266789999
Q ss_pred EEeecccCcc-----ccchhhccccccccccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEcCC
Q 035732 227 LQIRRCDNIR-----TLTAEEGIQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGC 301 (559)
Q Consensus 227 L~l~~~~~l~-----~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~~ 301 (559)
|++.++..-. .++... ......+ ++|++|++++ +.+.. .+ +..+ ..+ ++|++|++++|
T Consensus 301 L~L~~~~~~~~~~~~~lp~i~---~~~~~~l--~~L~~L~l~~-n~l~~-~~----~~~~-----~~l-~~L~~L~Ls~n 363 (680)
T 1ziw_A 301 LNLKRSFTKQSISLASLPKID---DFSFQWL--KCLEHLNMED-NDIPG-IK----SNMF-----TGL-INLKYLSLSNS 363 (680)
T ss_dssp EECTTCBCCC------CCEEC---TTTTTTC--TTCCEEECCS-CCBCC-CC----TTTT-----TTC-TTCCEEECTTC
T ss_pred EeccchhhhcccccccccccC---hhhcccC--CCCCEEECCC-CccCC-CC----hhHh-----ccc-cCCcEEECCCC
Confidence 9998643111 111100 0011112 3499999998 55554 22 2222 233 68999999987
Q ss_pred CCc-cchH-Hhhcc--CCCCceEEeeecCccccccccCCCCCccceeecccccCceecCC-CCCCCCCccEEeccccccc
Q 035732 302 SKV-ESIA-ERLDN--NTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPE-GGLPCAKLTRLEIYDCKRL 376 (559)
Q Consensus 302 ~~~-~~~~-~~~~~--l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~ 376 (559)
... ..++ ..+.. .++|+.|++++|.+....+..+..+++|+.|++++|.....++. .+..+++|+.|++++|...
T Consensus 364 ~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 443 (680)
T 1ziw_A 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443 (680)
T ss_dssp BSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEE
T ss_pred chhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcc
Confidence 531 2221 22332 36899999999988877788889999999999999976666663 5667789999999999866
Q ss_pred cccccccccCCCcceEEecC-CCC---CCcC-CCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCCCce
Q 035732 377 EALPKGLHNLTSLQHLTIGG-ALP---SLEE-DGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMV 451 (559)
Q Consensus 377 ~~~~~~l~~l~~L~~L~l~~-~l~---~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 451 (559)
...+..+..+++|+.|++++ .+. .++. ...+++|++|++++|. ++...+ ..+.++++|+.|++++|. +.
T Consensus 444 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~i~~---~~~~~l~~L~~L~Ls~N~--l~ 517 (680)
T 1ziw_A 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IANIND---DMLEGLEKLEILDLQHNN--LA 517 (680)
T ss_dssp ECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC-CCCCCT---TTTTTCTTCCEEECCSSC--CG
T ss_pred eeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCC-CCcCCh---hhhccccccCEEeCCCCC--cc
Confidence 66677888999999999998 543 3333 5567899999999998 554333 368899999999999985 33
Q ss_pred eecccc--cccccccccccccceeeccccccccccccc-cccCCCcCeEEecCCCCCcccCCCCC--CCCceEEEecCCh
Q 035732 452 SFPLEN--KRLGTALPLLASLTSLGISRFPNLERLSSS-IVDLQNLTLLQLWGCPKLKYFPKKGL--PSSLLELDIVGCP 526 (559)
Q Consensus 452 ~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~ 526 (559)
.++... ......+..+++|+.|++++ +.++.+|.. +..+++|++|++++ ++++.+|...+ +++|+.|++++|.
T Consensus 518 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N~ 595 (680)
T 1ziw_A 518 RLWKHANPGGPIYFLKGLSHLHILNLES-NGFDEIPVEVFKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKNL 595 (680)
T ss_dssp GGGSTTSTTSCCCTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred ccchhhccCCcchhhcCCCCCCEEECCC-CCCCCCCHHHcccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCCc
Confidence 332211 00001266789999999999 467788764 68899999999998 68999888543 5899999999984
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-31 Score=282.77 Aligned_cols=436 Identities=16% Similarity=0.120 Sum_probs=256.3
Q ss_pred cCccEEeecCCCceEeeccCCccCcccceeeecCCcceeecCCCCCCCCCccEEEeccccCccEEeccCchhhhccCCCc
Q 035732 17 PAFCKLEIDGCKKVLWRSATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHDELLQDICSLK 96 (559)
Q Consensus 17 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~ 96 (559)
+.+++|+++++.........+ ..+++|++|+++++ .++. +++..++.+++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~------------------------~~l~~L~~L~Ls~n-~i~~---i~~~~~~~l~~L~ 79 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSF------------------------FSFPELQVLDLSRC-EIQT---IEDGAYQSLSHLS 79 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTT------------------------TTCSSCCEEECTTC-CCCE---ECTTTTTTCTTCC
T ss_pred ccccEEEccCCccCccChhHh------------------------hCCCCceEEECCCC-cCCc---cCcccccCchhCC
Confidence 578999999887655443221 25777888888777 4554 6666677788888
Q ss_pred EEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccCC-CCCCCCccceeeccCCCCcc-ccC-CCCCCC
Q 035732 97 RLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLPQ-SSFSLSSLREIEIYNCSSLV-SFP-EVALPS 173 (559)
Q Consensus 97 ~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~-~~~-~~~~~~ 173 (559)
+|+++++ .++.+++. .+..+ ++|++|++++|.. ..++. .+..+++|++|++++|.... .+| .+..++
T Consensus 80 ~L~L~~n-~l~~~~~~----~~~~l----~~L~~L~L~~n~l-~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~ 149 (570)
T 2z63_A 80 TLILTGN-PIQSLALG----AFSGL----SSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149 (570)
T ss_dssp EEECTTC-CCCEECTT----TTTTC----TTCCEEECTTSCC-CCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCT
T ss_pred EEeCcCC-cCCccCHh----hhcCc----ccccccccccccc-ccCCCccccccccccEEecCCCccceecChhhhcccC
Confidence 8888775 56666554 34455 7788888887754 44443 57777888888887774433 234 366677
Q ss_pred CccEEEecccCCCcccCcccccCCCCCc----cEEecCCCCCccccccc-cCCCCcceEEeecccC--------------
Q 035732 174 KLKKIRISYCGALKSLPEAWMCDTNSSL----EILNIEHCRWLTFIAAV-QLPSSLKKLQIRRCDN-------------- 234 (559)
Q Consensus 174 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L----~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~-------------- 234 (559)
+|++|++++|. +..++...+ ..+++| +.+++++|. +..++.. ....+|+.|++.++..
T Consensus 150 ~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~~~~~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~ 226 (570)
T 2z63_A 150 NLEHLDLSSNK-IQSIYCTDL-RVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAG 226 (570)
T ss_dssp TCCEEECTTSC-CCEECGGGG-HHHHTCTTCCCEEECTTCC-CCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTT
T ss_pred CCCEEeCcCCc-cceecHHHc-cchhccchhhhhcccCCCC-ceecCHHHhccCcceeEecccccccccchhhhhcCccc
Confidence 78888887776 333322211 112334 567777664 3333222 2223566666654310
Q ss_pred ----------------ccccchhhccc---------------------cccccccccCCccEEEEecCCCccccccCCCC
Q 035732 235 ----------------IRTLTAEEGIQ---------------------CSSGRRYTSSLLEELEIWDCPSLTCIFSKNEL 277 (559)
Q Consensus 235 ----------------l~~~~~~~~~~---------------------~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 277 (559)
+..++...... ......+ ++|++|++.++ .+.. +
T Consensus 227 l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l--~~L~~L~l~~~-~l~~------l 297 (570)
T 2z63_A 227 LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL--TNVSSFSLVSV-TIER------V 297 (570)
T ss_dssp CEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGG--TTCSEEEEESC-EECS------C
T ss_pred cceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCc--CcccEEEecCc-cchh------h
Confidence 00000000000 0000111 22555555552 2222 1
Q ss_pred CccccccccCCCCCCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceec--
Q 035732 278 PATLESLEVGNLPPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSF-- 355 (559)
Q Consensus 278 ~~~~~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-- 355 (559)
|..+ ..+ +|++|++.+|... .+|. ..+++|++|++++|......+. ..+++|++|++++|......
T Consensus 298 ~~~~-----~~~--~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~ 365 (570)
T 2z63_A 298 KDFS-----YNF--GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCC 365 (570)
T ss_dssp CBCC-----SCC--CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEE
T ss_pred hhhh-----ccC--CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccc
Confidence 1111 112 5666666666533 3322 4566777777777665443332 56777888888777543221
Q ss_pred CCCCCCCCCccEEeccccccccccccccccCCCcceEEecC-CCCCCc---CCCCCCCCceeeecCccchhhhhhhcccc
Q 035732 356 PEGGLPCAKLTRLEIYDCKRLEALPKGLHNLTSLQHLTIGG-ALPSLE---EDGLPTNLQLLNIEGNMEIWKSMIERGRG 431 (559)
Q Consensus 356 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~---~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 431 (559)
+..+..+++|+.|++++|... .++..+..+++|+.|++++ .+...+ ....+++|++|++++|. +....+ ..
T Consensus 366 ~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~---~~ 440 (570)
T 2z63_A 366 SQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFN---GI 440 (570)
T ss_dssp EHHHHTCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSC-CEECCT---TT
T ss_pred cccccccCccCEEECCCCccc-cccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCc-ccccch---hh
Confidence 334445667888888887643 3444477888888888887 444332 24566788888888887 433333 35
Q ss_pred cccCccccEEEEeecCCCceeecccccccccccccccccceeeccccccccccccccccCCCcCeEEecCCCCCcccCCC
Q 035732 432 FHRFSSLRRLTISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSSSIVDLQNLTLLQLWGCPKLKYFPKK 511 (559)
Q Consensus 432 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~ 511 (559)
+.++++|++|++++|......++. .+..+++|+.|++++|......|..+..+++|++|++++| .++.++..
T Consensus 441 ~~~l~~L~~L~l~~n~l~~~~~p~-------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~ 512 (570)
T 2z63_A 441 FNGLSSLEVLKMAGNSFQENFLPD-------IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDG 512 (570)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECS-------CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTT
T ss_pred hhcCCcCcEEECcCCcCccccchh-------hhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC-cCCCCCHH
Confidence 777888888888887422123442 3667788888888886543334666777888888888884 67777664
Q ss_pred CC--CCCceEEEecCChh
Q 035732 512 GL--PSSLLELDIVGCPL 527 (559)
Q Consensus 512 ~~--~~~L~~L~l~~c~~ 527 (559)
.+ .++|+.|++++|+.
T Consensus 513 ~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 513 IFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp TTTTCTTCCEEECCSSCB
T ss_pred HhhcccCCcEEEecCCcc
Confidence 33 57888888888753
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.7e-31 Score=284.17 Aligned_cols=432 Identities=16% Similarity=0.128 Sum_probs=281.8
Q ss_pred cCccEEeecCCCceEeeccCC-ccCcccceeeecCCcceeecCCCCCCCCCccEEEeccccCccEEeccCchhhhccCCC
Q 035732 17 PAFCKLEIDGCKKVLWRSATD-HLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHDELLQDICSL 95 (559)
Q Consensus 17 ~~L~~L~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 95 (559)
++|++|+++++.........+ .+...+.+.... .+...+....+..+++|++|+++++ .++. +.+..++.+++|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~i~~~~~~~l~~L~~L~Ls~n-~l~~---~~p~~~~~l~~L 106 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSR-CEIETIEDKAWHGLHHLSNLILTGN-PIQS---FSPGSFSGLTSL 106 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-CCCCEECTTTTTTCTTCCEEECTTC-CCCC---CCTTSSTTCTTC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCC-CcccccCHHHhhchhhcCEeECCCC-cccc---cChhhcCCcccC
Confidence 556666666665544433222 122222222111 1111222223346788888888877 3544 656677888888
Q ss_pred cEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCc-ccCCCCCCCCccceeeccCCCCccccCC-CCCCC
Q 035732 96 KRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLV-KLPQSSFSLSSLREIEIYNCSSLVSFPE-VALPS 173 (559)
Q Consensus 96 ~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~ 173 (559)
++|++++| .++.+++. .++++ ++|++|++++|.... .+|..+.++++|++|++++|......+. +..+.
T Consensus 107 ~~L~L~~n-~l~~~~~~----~~~~l----~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 177 (606)
T 3vq2_A 107 ENLVAVET-KLASLESF----PIGQL----ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177 (606)
T ss_dssp CEEECTTS-CCCCSSSS----CCTTC----TTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHH
T ss_pred CEEEccCC-cccccccc----ccCCC----CCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhh
Confidence 88888886 66666543 25555 888888888886533 5677788888888888888754333221 33333
Q ss_pred Cc----cEEEecccCCCcccCcccccCCCCCccEEecCCCCC--------------------------------------
Q 035732 174 KL----KKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCRW-------------------------------------- 211 (559)
Q Consensus 174 ~L----~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------------------------------------- 211 (559)
+| ++|++++|. +..++...+ ...+|++|++++|..
T Consensus 178 ~L~~~l~~L~l~~n~-l~~~~~~~~--~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~ 254 (606)
T 3vq2_A 178 ENPQVNLSLDMSLNP-IDFIQDQAF--QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254 (606)
T ss_dssp HCTTCCCEEECTTCC-CCEECTTTT--TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGG
T ss_pred ccccccceeeccCCC-cceeCcccc--cCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHH
Confidence 22 255555554 333333221 112344444444321
Q ss_pred ------------------------------------------ccccccccCCCCcceEEeecccCccccchhhccccccc
Q 035732 212 ------------------------------------------LTFIAAVQLPSSLKKLQIRRCDNIRTLTAEEGIQCSSG 249 (559)
Q Consensus 212 ------------------------------------------~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 249 (559)
+..++....+++|+.|++.+|.. +.+|.. .
T Consensus 255 ~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~~-~------ 326 (606)
T 3vq2_A 255 MEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPTL-D------ 326 (606)
T ss_dssp GTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCCC-C------
T ss_pred hhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccccC-C------
Confidence 23333223344555555555432 334321 1
Q ss_pred cccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEcCCCCccc--hHHhhccCCCCceEEeeecCc
Q 035732 250 RRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKVES--IAERLDNNTSLEKISIKRCGT 327 (559)
Q Consensus 250 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~ 327 (559)
+ ++|++|+++++..+.. ++ +..+ ++|++|++++|..... .+..+..+++|++|++++|.+
T Consensus 327 --l--~~L~~L~l~~n~~~~~-~~------------~~~l-~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 388 (606)
T 3vq2_A 327 --L--PFLKSLTLTMNKGSIS-FK------------KVAL-PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA 388 (606)
T ss_dssp --C--SSCCEEEEESCSSCEE-CC------------CCCC-TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSE
T ss_pred --C--CccceeeccCCcCccc-hh------------hccC-CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcc
Confidence 1 2366666666433332 11 1344 5899999999875543 367889999999999999975
Q ss_pred cccccccCCCCCccceeecccccCceecC-CCCCCCCCccEEeccccccccccccccccCCCcceEEecC-CCCC--CcC
Q 035732 328 LKILPSGLHNLRQLQEISIQICENLVSFP-EGGLPCAKLTRLEIYDCKRLEALPKGLHNLTSLQHLTIGG-ALPS--LEE 403 (559)
Q Consensus 328 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~--~~~ 403 (559)
.. ++..+..+++|++|++++|......+ ..+..+++|+.|++++|......|..+..+++|++|++++ .+.. ++.
T Consensus 389 ~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 467 (606)
T 3vq2_A 389 II-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN 467 (606)
T ss_dssp EE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred cc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHH
Confidence 54 66888999999999999996555444 3567788999999999998777888899999999999999 5554 333
Q ss_pred -CCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCCCceeecccccccccccccccccceeecccccccc
Q 035732 404 -DGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLE 482 (559)
Q Consensus 404 -~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 482 (559)
...+++|++|++++|. +....+ ..+..+++|++|++++|. +..+... .+..+++|+.|++++| .++
T Consensus 468 ~~~~l~~L~~L~Ls~n~-l~~~~~---~~~~~l~~L~~L~Ls~N~--l~~~~~~------~~~~l~~L~~L~l~~N-~l~ 534 (606)
T 3vq2_A 468 VFANTTNLTFLDLSKCQ-LEQISW---GVFDTLHRLQLLNMSHNN--LLFLDSS------HYNQLYSLSTLDCSFN-RIE 534 (606)
T ss_dssp CCTTCTTCCEEECTTSC-CCEECT---TTTTTCTTCCEEECCSSC--CSCEEGG------GTTTCTTCCEEECTTS-CCC
T ss_pred hhccCCCCCEEECCCCc-CCccCh---hhhcccccCCEEECCCCc--CCCcCHH------HccCCCcCCEEECCCC-cCc
Confidence 5678999999999998 554444 368899999999999984 4444332 3778899999999995 588
Q ss_pred ccccccccCC-CcCeEEecCCCCC
Q 035732 483 RLSSSIVDLQ-NLTLLQLWGCPKL 505 (559)
Q Consensus 483 ~~~~~~~~~~-~L~~L~l~~c~~l 505 (559)
.+|..+..++ +|++|++++|+-.
T Consensus 535 ~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 535 TSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp CEESCGGGSCTTCCEEECCSCCCC
T ss_pred ccCHhHhhhcccCcEEEccCCCcc
Confidence 9998888887 5999999996543
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.98 E-value=5e-31 Score=277.14 Aligned_cols=444 Identities=17% Similarity=0.198 Sum_probs=281.2
Q ss_pred CCCccCCCccCccEEeecCCCceEeeccCCccCcccceeeecCCcceeecCCCCCCCCCccEEEeccccCccEEeccCch
Q 035732 8 ELSVSVSSLPAFCKLEIDGCKKVLWRSATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHDE 87 (559)
Q Consensus 8 ~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 87 (559)
++|..+ .++|++|++++|.........+ ..+++|++|+++++ .++. +++.
T Consensus 19 ~ip~~~--~~~L~~L~Ls~n~l~~~~~~~~------------------------~~l~~L~~L~Ls~n-~i~~---~~~~ 68 (549)
T 2z81_A 19 SIPSGL--TAAMKSLDLSFNKITYIGHGDL------------------------RACANLQVLILKSS-RINT---IEGD 68 (549)
T ss_dssp SCCSCC--CTTCCEEECCSSCCCEECSSTT------------------------SSCTTCCEEECTTS-CCCE---ECTT
T ss_pred cccccC--CCCccEEECcCCccCccChhhh------------------------hcCCcccEEECCCC-CcCc---cChh
Confidence 344434 3799999999997655433211 25788888888887 4555 6666
Q ss_pred hhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCc-ccCCCCCCCCccceeeccCCCCcccc
Q 035732 88 LLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLV-KLPQSSFSLSSLREIEIYNCSSLVSF 166 (559)
Q Consensus 88 ~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~ 166 (559)
.++.+++|++|+++++ .++.+++. .++.+ ++|++|++++|.... .+|..+..+++|++|++++|.....+
T Consensus 69 ~~~~l~~L~~L~Ls~n-~l~~~~~~----~~~~l----~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 139 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDN-HLSSLSSS----WFGPL----SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI 139 (549)
T ss_dssp TTTTCTTCCEEECTTS-CCCSCCHH----HHTTC----TTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE
T ss_pred hccccccCCEEECCCC-ccCccCHH----HhccC----CCCcEEECCCCcccccchhhhhhccCCccEEECCCCcccccc
Confidence 7788888888888886 66666553 35666 888888888886532 44667788888888888887656666
Q ss_pred C--CCCCCCCccEEEecccCCCcccCcccccCCCCCccEEecCCCCCccccccc--cCCCCcceEEeecccCccccc---
Q 035732 167 P--EVALPSKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCRWLTFIAAV--QLPSSLKKLQIRRCDNIRTLT--- 239 (559)
Q Consensus 167 ~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~--- 239 (559)
+ .+..+++|++|++++|......|..+ ..+++|++|+++++. ...++.. ..+++|+.|+++++. +...+
T Consensus 140 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l--~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 215 (549)
T 2z81_A 140 RRIDFAGLTSLNELEIKALSLRNYQSQSL--KSIRDIHHLTLHLSE-SAFLLEIFADILSSVRYLELRDTN-LARFQFSP 215 (549)
T ss_dssp CTTTTTTCCEEEEEEEEETTCCEECTTTT--TTCSEEEEEEEECSB-STTHHHHHHHSTTTBSEEEEESCB-CTTCCCCC
T ss_pred CHhhhhcccccCeeeccCCcccccChhhh--hccccCceEecccCc-ccccchhhHhhcccccEEEccCCc-cccccccc
Confidence 5 47778888888888887544445443 334667777776664 2333222 335666666666532 22211
Q ss_pred hhhcccc----------------------ccccccccCCccEEEEecCCCccccccCCCCCc-cccccccCCCCCCccEE
Q 035732 240 AEEGIQC----------------------SSGRRYTSSLLEELEIWDCPSLTCIFSKNELPA-TLESLEVGNLPPSLKSL 296 (559)
Q Consensus 240 ~~~~~~~----------------------~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-~~~~l~~~~l~~~L~~L 296 (559)
....... .....+ ++++.+++.+|. +.. . ..++. .... +..+ .+++.|
T Consensus 216 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~--~~L~~l~l~~~~-~~~-~--~~~~~~~~~~--~~~l-~~L~~L 286 (549)
T 2z81_A 216 LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI--LELSEVEFDDCT-LNG-L--GDFNPSESDV--VSEL-GKVETV 286 (549)
T ss_dssp CSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGC--TTCCEEEEESCE-EEC-C--SCCCCCTTTC--CCCC-TTCCEE
T ss_pred cchhhhhhcccceeccccccchhHHHHHHHHhhhh--cccccccccccc-ccc-c--ccccccchhh--hhhh-cccccc
Confidence 0000000 000011 125555555531 111 0 00000 0000 0222 467777
Q ss_pred EEcCCCCccc-----hHHhhccCCCCceEEeeecCccccccccC-CCCCccceeecccccCceecC---CCCCCCCCccE
Q 035732 297 YVYGCSKVES-----IAERLDNNTSLEKISIKRCGTLKILPSGL-HNLRQLQEISIQICENLVSFP---EGGLPCAKLTR 367 (559)
Q Consensus 297 ~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~ 367 (559)
.+.++..... ++.......+|++|++++|.+ ..+|..+ .++++|++|++++|.....++ .....+++|+.
T Consensus 287 ~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l-~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~ 365 (549)
T 2z81_A 287 TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQT 365 (549)
T ss_dssp EEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC-CCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCE
T ss_pred cccccccchhhhcccchhhhhhcccceEEEeccCcc-ccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcE
Confidence 7776543221 122234567888899988764 4566555 468899999999886654442 23556678999
Q ss_pred Eeccccccccccc---cccccCCCcceEEecC-CCCCCcC-CCCCCCCceeeecCccchhhhhhhcccccccCccccEEE
Q 035732 368 LEIYDCKRLEALP---KGLHNLTSLQHLTIGG-ALPSLEE-DGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLT 442 (559)
Q Consensus 368 L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~-~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~ 442 (559)
|++++|... .++ ..+..+++|++|++++ .++.+|. ...+++|++|++++|. ++.... .-.++|+.|+
T Consensus 366 L~Ls~N~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~------~~~~~L~~L~ 437 (549)
T 2z81_A 366 LVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG-IRVVKT------CIPQTLEVLD 437 (549)
T ss_dssp EECTTSCCC-CHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSC-CSCCCT------TSCTTCSEEE
T ss_pred EEccCCccc-ccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCC-cccccc------hhcCCceEEE
Confidence 999998643 333 3578889999999998 7777765 4567889999999988 432211 1136899999
Q ss_pred EeecCCCceeecccccccccccccccccceeeccccccccccccccccCCCcCeEEecCCCCCcccCCCCC--CCCceEE
Q 035732 443 ISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSSSIVDLQNLTLLQLWGCPKLKYFPKKGL--PSSLLEL 520 (559)
Q Consensus 443 l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L 520 (559)
+++|. +..+ ...+++|++|++++| .++.+|. ...+++|+.|++++ +.++.+++..+ +++|+.|
T Consensus 438 Ls~N~--l~~~----------~~~l~~L~~L~Ls~N-~l~~ip~-~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L 502 (549)
T 2z81_A 438 VSNNN--LDSF----------SLFLPRLQELYISRN-KLKTLPD-ASLFPVLLVMKISR-NQLKSVPDGIFDRLTSLQKI 502 (549)
T ss_dssp CCSSC--CSCC----------CCCCTTCCEEECCSS-CCSSCCC-GGGCTTCCEEECCS-SCCCCCCTTGGGGCTTCCEE
T ss_pred CCCCC--hhhh----------cccCChhcEEECCCC-ccCcCCC-cccCccCCEEecCC-CccCCcCHHHHhcCcccCEE
Confidence 99874 3222 235689999999995 6778876 35689999999999 57888776433 5799999
Q ss_pred EecCChh
Q 035732 521 DIVGCPL 527 (559)
Q Consensus 521 ~l~~c~~ 527 (559)
++++|+.
T Consensus 503 ~l~~N~~ 509 (549)
T 2z81_A 503 WLHTNPW 509 (549)
T ss_dssp ECCSSCB
T ss_pred EecCCCc
Confidence 9988873
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=5e-31 Score=280.34 Aligned_cols=429 Identities=16% Similarity=0.198 Sum_probs=292.6
Q ss_pred ccCcc---cceeeecCCcceeecCCCCCCCCCccEEEeccccCccEEeccCchhhhccCCCcEEEeccCCC------cc-
Q 035732 38 HLGSQ---NSVVCRDASNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHDELLQDICSLKRLTIDSCPK------LQ- 107 (559)
Q Consensus 38 ~~~~~---~~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~------l~- 107 (559)
.+|.| .++.|... .+++.|++.++ ++.- .++ ..++.+++|++|+++++.. ..
T Consensus 65 ~~c~w~~~~GV~C~~~--------------~~V~~L~L~~~-~l~g--~lp-~~l~~L~~L~~L~Ls~N~~~~~~~~~~~ 126 (636)
T 4eco_A 65 ELDMWGAQPGVSLNSN--------------GRVTGLSLEGF-GASG--RVP-DAIGQLTELEVLALGSHGEKVNERLFGP 126 (636)
T ss_dssp CGGGTTCCTTEEECTT--------------CCEEEEECTTS-CCEE--EEC-GGGGGCTTCCEEESCCGGGGGTCCSBST
T ss_pred CcccccCCCCeEEcCC--------------CCEEEEEecCc-ccCC--cCC-hHHhcCccceEEECcCCccccCCccccc
Confidence 47888 99999542 46778888877 4432 244 5679999999999988632 00
Q ss_pred -----ccccch--------------------HHHHHhhhhh-----------ccCceeEEeccc-CCCCcccCCCCCCCC
Q 035732 108 -----SLVAEE--------------------EKDQQQQLCE-----------LSCRLEYLGLTS-CHGLVKLPQSSFSLS 150 (559)
Q Consensus 108 -----~l~~~~--------------------~~~~l~~L~~-----------~~~~L~~L~l~~-~~~l~~~~~~~~~l~ 150 (559)
.++.+. +...+.++.. ....++.+.+.. +..+..+|..+++++
T Consensus 127 ~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~ 206 (636)
T 4eco_A 127 KGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLT 206 (636)
T ss_dssp TSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCT
T ss_pred cccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhccc
Confidence 111100 0000000000 001122222222 223345788888888
Q ss_pred ccceeeccCCCCccc-----------------cC-CCC--CCCCccEEEecccCCCcccCcccccCCCCCccEEecCCCC
Q 035732 151 SLREIEIYNCSSLVS-----------------FP-EVA--LPSKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCR 210 (559)
Q Consensus 151 ~L~~L~l~~~~~~~~-----------------~~-~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 210 (559)
+|++|++++|..... +| .++ .+++|++|++++|.....+|..+ ..+++|++|++++|.
T Consensus 207 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL--KALPEMQLINVACNR 284 (636)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT--TTCSSCCEEECTTCT
T ss_pred CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH--hcCCCCCEEECcCCC
Confidence 888888888864442 66 466 78888888888888777777664 455888888888886
Q ss_pred Ccc--ccccc-cC------CCCcceEEeecccCccccch--hhccccccccccccCCccEEEEecCCCccccccCCCCCc
Q 035732 211 WLT--FIAAV-QL------PSSLKKLQIRRCDNIRTLTA--EEGIQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPA 279 (559)
Q Consensus 211 ~~~--~~~~~-~~------~~~L~~L~l~~~~~l~~~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 279 (559)
.++ .++.. .. +++|+.|+++++ .++.+|. .+.. ++ +|++|++++ +.+. +.+|
T Consensus 285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~-------l~--~L~~L~L~~-N~l~-----g~ip- 347 (636)
T 4eco_A 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQK-------MK--KLGMLECLY-NQLE-----GKLP- 347 (636)
T ss_dssp TSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTT-------CT--TCCEEECCS-CCCE-----EECC-
T ss_pred CCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhcc-------CC--CCCEEeCcC-CcCc-----cchh-
Confidence 343 34433 22 378888888884 4556665 3333 22 388999888 4555 1222
Q ss_pred cccccccCCCCCCccEEEEcCCCCccchHHhhccCCC-CceEEeeecCccccccccCCCC--CccceeecccccCceecC
Q 035732 280 TLESLEVGNLPPSLKSLYVYGCSKVESIAERLDNNTS-LEKISIKRCGTLKILPSGLHNL--RQLQEISIQICENLVSFP 356 (559)
Q Consensus 280 ~~~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~ 356 (559)
.+..+ ++|++|++++|... .+|..+..+++ |++|++++|.+. .+|..+... ++|++|++++|......|
T Consensus 348 ~~~~l------~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p 419 (636)
T 4eco_A 348 AFGSE------IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419 (636)
T ss_dssp CCEEE------EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred hhCCC------CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcch
Confidence 33222 58999999988644 77778888988 999999998876 677777654 489999999987665555
Q ss_pred CCCC-------CCCCccEEeccccccccccccc-cccCCCcceEEecC-CCCCCcCCCC---------CCCCceeeecCc
Q 035732 357 EGGL-------PCAKLTRLEIYDCKRLEALPKG-LHNLTSLQHLTIGG-ALPSLEEDGL---------PTNLQLLNIEGN 418 (559)
Q Consensus 357 ~~~~-------~~~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~-~l~~~~~~~~---------~~~L~~L~l~~~ 418 (559)
..+. .+++|+.|++++|... .+|.. +..+++|+.|++++ .+..++.... +++|++|++++|
T Consensus 420 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N 498 (636)
T 4eco_A 420 KNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN 498 (636)
T ss_dssp CSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSS
T ss_pred hhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCC
Confidence 5444 5668999999998754 56654 45689999999998 7776655321 128999999999
Q ss_pred cchhhhhhhcccccc--cCccccEEEEeecCCCceeecccccccccccccccccceeecc------cccccccccccccc
Q 035732 419 MEIWKSMIERGRGFH--RFSSLRRLTISRCDDDMVSFPLENKRLGTALPLLASLTSLGIS------RFPNLERLSSSIVD 490 (559)
Q Consensus 419 ~~l~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~------~~~~l~~~~~~~~~ 490 (559)
. ++. ++. .+. .+++|+.|++++|. +..+|. .+..+++|+.|+++ +|.....+|..+..
T Consensus 499 ~-l~~-lp~---~~~~~~l~~L~~L~Ls~N~--l~~ip~-------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~ 564 (636)
T 4eco_A 499 K-LTK-LSD---DFRATTLPYLVGIDLSYNS--FSKFPT-------QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564 (636)
T ss_dssp C-CCB-CCG---GGSTTTCTTCCEEECCSSC--CSSCCC-------GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG
T ss_pred c-CCc-cCh---hhhhccCCCcCEEECCCCC--CCCcCh-------hhhcCCCCCEEECCCCcccccCcccccChHHHhc
Confidence 8 443 332 344 89999999999985 334555 25578999999995 44556678888889
Q ss_pred CCCcCeEEecCCCCCcccCCCCCCCCceEEEecCChhh
Q 035732 491 LQNLTLLQLWGCPKLKYFPKKGLPSSLLELDIVGCPLI 528 (559)
Q Consensus 491 ~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l 528 (559)
+++|++|++++ +.++.+|.. +.++|+.|++++|+..
T Consensus 565 l~~L~~L~Ls~-N~l~~ip~~-~~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 565 CPSLTQLQIGS-NDIRKVNEK-ITPNISVLDIKDNPNI 600 (636)
T ss_dssp CSSCCEEECCS-SCCCBCCSC-CCTTCCEEECCSCTTC
T ss_pred CCCCCEEECCC-CcCCccCHh-HhCcCCEEECcCCCCc
Confidence 99999999999 467889885 4489999999999753
No 13
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=6.4e-31 Score=274.26 Aligned_cols=441 Identities=15% Similarity=0.076 Sum_probs=290.9
Q ss_pred CCCccCCCccCccEEeecCCCceEeeccCCccCcccceeeecCCcceeecCCCCCCCCCccEEEeccccCccEEeccCch
Q 035732 8 ELSVSVSSLPAFCKLEIDGCKKVLWRSATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHDE 87 (559)
Q Consensus 8 ~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 87 (559)
.+|..++ ++|++|++++|.........+ ..+++|++|+++++ .++. +.+.
T Consensus 14 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~------------------------~~l~~L~~L~Ls~n-~l~~---~~~~ 63 (520)
T 2z7x_B 14 HVPKDLS--QKTTILNISQNYISELWTSDI------------------------LSLSKLRILIISHN-RIQY---LDIS 63 (520)
T ss_dssp SCCCSCC--TTCSEEECCSSCCCCCCHHHH------------------------TTCTTCCEEECCSS-CCCE---EEGG
T ss_pred ccccccc--ccccEEECCCCcccccChhhc------------------------cccccccEEecCCC-ccCC---cChH
Confidence 3444454 889999998887554332111 25888999999888 4555 6566
Q ss_pred hhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCc-ccCCCCCCCCccceeeccCCCCcccc
Q 035732 88 LLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLV-KLPQSSFSLSSLREIEIYNCSSLVSF 166 (559)
Q Consensus 88 ~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~ 166 (559)
.++.+++|++|+++++ .++.++.. .+ ++|++|++++|.... .+|..+..+++|++|++++|....
T Consensus 64 ~~~~l~~L~~L~Ls~N-~l~~lp~~-------~l----~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~-- 129 (520)
T 2z7x_B 64 VFKFNQELEYLDLSHN-KLVKISCH-------PT----VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-- 129 (520)
T ss_dssp GGTTCTTCCEEECCSS-CCCEEECC-------CC----CCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--
T ss_pred HhhcccCCCEEecCCC-ceeecCcc-------cc----CCccEEeccCCccccccchhhhccCCcceEEEecCcccch--
Confidence 7888999999999886 77777653 34 889999999987643 467788889999999998875433
Q ss_pred CCCCCCCCc--cEEEecccCC--CcccCcccccCCCCCccEEecCCCCCccccccc--cCCCCcceEEeecccC---ccc
Q 035732 167 PEVALPSKL--KKIRISYCGA--LKSLPEAWMCDTNSSLEILNIEHCRWLTFIAAV--QLPSSLKKLQIRRCDN---IRT 237 (559)
Q Consensus 167 ~~~~~~~~L--~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~---l~~ 237 (559)
..+..+++| ++|++++|.. ....|..+..... ....+++.+|.....++.. ..+++|+.++++++.. ...
T Consensus 130 ~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~-~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 208 (520)
T 2z7x_B 130 SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT-ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY 208 (520)
T ss_dssp GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCE-EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHH
T ss_pred hhccccccceeeEEEeeccccccccccccccccccc-ceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccce
Confidence 235566677 9999998875 3444444321111 2334566666544433332 3467777777777531 111
Q ss_pred cchhhccccccccccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEcCCCCccchHHhh-----c
Q 035732 238 LTAEEGIQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKVESIAERL-----D 312 (559)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~-----~ 312 (559)
+..... ....++ +|+.|++.++ .+.. ..+...... ... ++|++|++++|...+.+|..+ .
T Consensus 209 ~~~~~~----~l~~l~--~L~~L~l~~~-~l~~----~~~~~~~~~---~~~-~~L~~L~l~~n~l~~~~p~~~~~~~~~ 273 (520)
T 2z7x_B 209 FLSILA----KLQTNP--KLSNLTLNNI-ETTW----NSFIRILQL---VWH-TTVWYFSISNVKLQGQLDFRDFDYSGT 273 (520)
T ss_dssp HHHHHH----GGGGCT--TCCEEEEEEE-EEEH----HHHHHHHHH---HHT-SSCSEEEEEEEEEESCCCCCCCCCCSC
T ss_pred eecchh----hhcccc--chhhcccccc-ccCH----HHHHHHHHH---hhh-CcccEEEeecccccCccccchhhcccc
Confidence 111000 011122 3777877763 2321 000000000 001 378888888876555666666 7
Q ss_pred cCCCCceEEeeecCcccccc-ccCCCC---CccceeecccccCceecCCCCCCCCCccEEeccccccccccccccccCCC
Q 035732 313 NNTSLEKISIKRCGTLKILP-SGLHNL---RQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALPKGLHNLTS 388 (559)
Q Consensus 313 ~l~~L~~L~l~~~~~~~~~~-~~~~~l---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 388 (559)
++++|+.+++++|.+ .+| ..+..+ ++|+.|++++|.... .+ ....+++|+.|++++|.....+|..+..+++
T Consensus 274 ~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 349 (520)
T 2z7x_B 274 SLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVH-ML-CPSKISPFLHLDFSNNLLTDTVFENCGHLTE 349 (520)
T ss_dssp CCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCC-CC-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSS
T ss_pred cCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccc-cc-chhhCCcccEEEeECCccChhhhhhhccCCC
Confidence 788888888888766 344 223222 568888888875322 22 1145678999999999877767888899999
Q ss_pred cceEEecC-CCCCCcC----CCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCCCceeecccccccccc
Q 035732 389 LQHLTIGG-ALPSLEE----DGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTA 463 (559)
Q Consensus 389 L~~L~l~~-~l~~~~~----~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 463 (559)
|++|++++ .+..++. ...+++|++|++++|. +...++. ..+..+++|++|++++|.... .++. .
T Consensus 350 L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~--~~~~~l~~L~~L~Ls~N~l~~-~~~~-------~ 418 (520)
T 2z7x_B 350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKK--GDCSWTKSLLSLNMSSNILTD-TIFR-------C 418 (520)
T ss_dssp CCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGG--CSCCCCTTCCEEECCSSCCCG-GGGG-------S
T ss_pred CCEEEccCCccCccccchHHHhhCCCCCEEECCCCc-CCccccc--chhccCccCCEEECcCCCCCc-chhh-------h
Confidence 99999998 7765432 5667899999999998 5543443 357788999999999985321 1111 1
Q ss_pred cccccccceeeccccccccccccccccCCCcCeEEecCCCCCcccCCCCC--CCCceEEEecCChh
Q 035732 464 LPLLASLTSLGISRFPNLERLSSSIVDLQNLTLLQLWGCPKLKYFPKKGL--PSSLLELDIVGCPL 527 (559)
Q Consensus 464 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~ 527 (559)
++ ++|+.|++++| .++.+|..+..+++|++|++++ +.++.+|...+ .++|++|++++|+.
T Consensus 419 l~--~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 419 LP--PRIKVLDLHSN-KIKSIPKQVVKLEALQELNVAS-NQLKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp CC--TTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hc--ccCCEEECCCC-cccccchhhhcCCCCCEEECCC-CcCCccCHHHhccCCcccEEECcCCCC
Confidence 22 68999999995 6778998888999999999999 57888888533 57999999998864
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=1.2e-30 Score=274.30 Aligned_cols=437 Identities=19% Similarity=0.189 Sum_probs=282.8
Q ss_pred CCCccEEEeccccCccEEeccCchhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccC
Q 035732 64 IPKLEELEIKNIKNETYIWKSHDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLP 143 (559)
Q Consensus 64 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~ 143 (559)
+++|++|+++++ .++. +++..+..+++|++|+++++ .++.+++. .+..+ ++|++|++++|......|
T Consensus 25 ~~~L~~L~Ls~n-~l~~---~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~----~~~~l----~~L~~L~Ls~n~l~~~~~ 91 (549)
T 2z81_A 25 TAAMKSLDLSFN-KITY---IGHGDLRACANLQVLILKSS-RINTIEGD----AFYSL----GSLEHLDLSDNHLSSLSS 91 (549)
T ss_dssp CTTCCEEECCSS-CCCE---ECSSTTSSCTTCCEEECTTS-CCCEECTT----TTTTC----TTCCEEECTTSCCCSCCH
T ss_pred CCCccEEECcCC-ccCc---cChhhhhcCCcccEEECCCC-CcCccChh----hcccc----ccCCEEECCCCccCccCH
Confidence 368999999998 4666 66677899999999999996 78887764 35666 999999999997644444
Q ss_pred CCCCCCCccceeeccCCCCcc-ccC-CCCCCCCccEEEecccCCCcccCcccccCCCCCccEEecCCCCCccccccc-cC
Q 035732 144 QSSFSLSSLREIEIYNCSSLV-SFP-EVALPSKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCRWLTFIAAV-QL 220 (559)
Q Consensus 144 ~~~~~l~~L~~L~l~~~~~~~-~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~ 220 (559)
..+..+++|++|++++|.... ..+ .+..+++|++|++++|..+..++...+ .++++|++|++++|......+.. ..
T Consensus 92 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~l~~ 170 (549)
T 2z81_A 92 SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF-AGLTSLNELEIKALSLRNYQSQSLKS 170 (549)
T ss_dssp HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT-TTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhh-hcccccCeeeccCCcccccChhhhhc
Confidence 458999999999999986543 233 588899999999999987777764332 45789999999999644333333 56
Q ss_pred CCCcceEEeecccCccccchhhccccccccccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEcC
Q 035732 221 PSSLKKLQIRRCDNIRTLTAEEGIQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYG 300 (559)
Q Consensus 221 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~ 300 (559)
+++|+.|++.++. +..++...... + ++|++|++++ +.++. ++.. +.. +....++|+.|++.+
T Consensus 171 l~~L~~L~l~~n~-~~~~~~~~~~~------l--~~L~~L~L~~-n~l~~-~~~~--~~~-----~~~~~~~L~~L~l~~ 232 (549)
T 2z81_A 171 IRDIHHLTLHLSE-SAFLLEIFADI------L--SSVRYLELRD-TNLAR-FQFS--PLP-----VDEVSSPMKKLAFRG 232 (549)
T ss_dssp CSEEEEEEEECSB-STTHHHHHHHS------T--TTBSEEEEES-CBCTT-CCCC--CCS-----SCCCCCCCCEEEEES
T ss_pred cccCceEecccCc-ccccchhhHhh------c--ccccEEEccC-Ccccc-cccc--ccc-----hhhhhhcccceeccc
Confidence 7899999998854 44444433211 2 3499999999 45554 2110 000 022236899999988
Q ss_pred CCCccchH----HhhccCCCCceEEeeecCcccc--c----cccCCCCCccce---------------------------
Q 035732 301 CSKVESIA----ERLDNNTSLEKISIKRCGTLKI--L----PSGLHNLRQLQE--------------------------- 343 (559)
Q Consensus 301 ~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~--~----~~~~~~l~~L~~--------------------------- 343 (559)
+......+ ..+..+.+|+.+++++|...+. + ...+..+++|+.
T Consensus 233 n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L 312 (549)
T 2z81_A 233 SVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312 (549)
T ss_dssp CEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTC
T ss_pred cccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccc
Confidence 76544333 3446678888888888765431 1 112233444444
Q ss_pred --eecccccCceecCCCC-CCCCCccEEeccccccccccc---cccccCCCcceEEecC-CCCCCcC----CCCCCCCce
Q 035732 344 --ISIQICENLVSFPEGG-LPCAKLTRLEIYDCKRLEALP---KGLHNLTSLQHLTIGG-ALPSLEE----DGLPTNLQL 412 (559)
Q Consensus 344 --L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~-~l~~~~~----~~~~~~L~~ 412 (559)
|++++|. +..+|..+ ..+++|+.|++++|.....+| ..+..+++|+.|++++ .++.++. ...+++|++
T Consensus 313 ~~L~l~~n~-l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~ 391 (549)
T 2z81_A 313 KRITVENSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTS 391 (549)
T ss_dssp CEEEEESSC-CCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCE
T ss_pred eEEEeccCc-cccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCE
Confidence 4444442 23333322 234566666666665444332 2345566666666666 5554432 344566666
Q ss_pred eeecCccchhhhhhhcccccccCccccEEEEeecCCCceeecccccccccccccccccceeeccccccccccccccccCC
Q 035732 413 LNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSSSIVDLQ 492 (559)
Q Consensus 413 L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 492 (559)
|++++|. ++. ++ ..+..+++|+.|++++|. +..++.. ++ ++|+.|++++| .++.++ ..++
T Consensus 392 L~Ls~N~-l~~-lp---~~~~~~~~L~~L~Ls~N~--l~~l~~~-------~~--~~L~~L~Ls~N-~l~~~~---~~l~ 451 (549)
T 2z81_A 392 LDISRNT-FHP-MP---DSCQWPEKMRFLNLSSTG--IRVVKTC-------IP--QTLEVLDVSNN-NLDSFS---LFLP 451 (549)
T ss_dssp EECTTCC-CCC-CC---SCCCCCTTCCEEECTTSC--CSCCCTT-------SC--TTCSEEECCSS-CCSCCC---CCCT
T ss_pred EECCCCC-Ccc-CC---hhhcccccccEEECCCCC--cccccch-------hc--CCceEEECCCC-Chhhhc---ccCC
Confidence 6666665 331 11 245556666666666653 2233321 21 56777777774 444443 4688
Q ss_pred CcCeEEecCCCCCcccCCCCCCCCceEEEecCChhhhhhhhccCcccccccCCCceeEEeceEecCC
Q 035732 493 NLTLLQLWGCPKLKYFPKKGLPSSLLELDIVGCPLIEEKCRKDGGQYWDLLTHIPYVLIAGKFVFGD 559 (559)
Q Consensus 493 ~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (559)
+|++|++++ ++++.+|....+++|+.|++++|.. +.. ..+.+..+..+..+++.++.+.+|
T Consensus 452 ~L~~L~Ls~-N~l~~ip~~~~l~~L~~L~Ls~N~l-~~~----~~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 452 RLQELYISR-NKLKTLPDASLFPVLLVMKISRNQL-KSV----PDGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp TCCEEECCS-SCCSSCCCGGGCTTCCEEECCSSCC-CCC----CTTGGGGCTTCCEEECCSSCBCCC
T ss_pred hhcEEECCC-CccCcCCCcccCccCCEEecCCCcc-CCc----CHHHHhcCcccCEEEecCCCccCC
Confidence 999999999 5788998866678999999999843 322 122456778888888988876654
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.5e-30 Score=274.90 Aligned_cols=412 Identities=17% Similarity=0.153 Sum_probs=293.8
Q ss_pred ccCCCccCccEEeecCCCceEeeccCCccCcccceeeecCCcceeecCCCCCCCCCccEEEeccccCccEEeccCchhhh
Q 035732 11 VSVSSLPAFCKLEIDGCKKVLWRSATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHDELLQ 90 (559)
Q Consensus 11 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 90 (559)
.+|..+++|++|++++|.........+ ..+++|++|++.++ .++. +++..++
T Consensus 46 ~~~~~l~~L~~L~Ls~n~i~~i~~~~~------------------------~~l~~L~~L~L~~n-~l~~---~~~~~~~ 97 (570)
T 2z63_A 46 YSFFSFPELQVLDLSRCEIQTIEDGAY------------------------QSLSHLSTLILTGN-PIQS---LALGAFS 97 (570)
T ss_dssp TTTTTCSSCCEEECTTCCCCEECTTTT------------------------TTCTTCCEEECTTC-CCCE---ECTTTTT
T ss_pred hHhhCCCCceEEECCCCcCCccCcccc------------------------cCchhCCEEeCcCC-cCCc---cCHhhhc
Confidence 468999999999999997655443322 25888999999887 4555 6667788
Q ss_pred ccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCc-ccCCCCCCCCccceeeccCCCCccccC-C
Q 035732 91 DICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLV-KLPQSSFSLSSLREIEIYNCSSLVSFP-E 168 (559)
Q Consensus 91 ~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~-~ 168 (559)
.+++|++|+++++ .++.++.. .++.+ ++|++|++++|.... .+|..+.++++|++|++++|......+ .
T Consensus 98 ~l~~L~~L~L~~n-~l~~l~~~----~~~~l----~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~ 168 (570)
T 2z63_A 98 GLSSLQKLVAVET-NLASLENF----PIGHL----KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (570)
T ss_dssp TCTTCCEEECTTS-CCCCSTTC----SCTTC----TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGG
T ss_pred Ccccccccccccc-ccccCCCc----ccccc----ccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHH
Confidence 8999999999886 67776553 25555 889999999886533 468888889999999998875443333 2
Q ss_pred CCCCCCc----cEEEecccCCCcccCcccccCCCCCccEEecCCCCC---------------------------------
Q 035732 169 VALPSKL----KKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCRW--------------------------------- 211 (559)
Q Consensus 169 ~~~~~~L----~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--------------------------------- 211 (559)
+..+++| +.|++++|. +..++... ....+|+.|++++|..
T Consensus 169 ~~~l~~L~~~~~~L~l~~n~-l~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~ 245 (570)
T 2z63_A 169 LRVLHQMPLLNLSLDLSLNP-MNFIQPGA--FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245 (570)
T ss_dssp GHHHHTCTTCCCEEECTTCC-CCEECTTT--TTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEE
T ss_pred ccchhccchhhhhcccCCCC-ceecCHHH--hccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhh
Confidence 5556666 788888877 33333332 2223577777665511
Q ss_pred ------------------------ccc-ccc-ccCCCCcceEEeecccCccccchhhccccccccccccCCccEEEEecC
Q 035732 212 ------------------------LTF-IAA-VQLPSSLKKLQIRRCDNIRTLTAEEGIQCSSGRRYTSSLLEELEIWDC 265 (559)
Q Consensus 212 ------------------------~~~-~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 265 (559)
+.. .+. ...+++|+.|++.++ .++.++..... . +|++|++.++
T Consensus 246 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~l~~~~~~-------~---~L~~L~l~~n 314 (570)
T 2z63_A 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV-TIERVKDFSYN-------F---GWQHLELVNC 314 (570)
T ss_dssp CCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESC-EECSCCBCCSC-------C---CCSEEEEESC
T ss_pred cchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCc-cchhhhhhhcc-------C---CccEEeeccC
Confidence 000 001 133578888888875 34455544332 2 4999999994
Q ss_pred CCccccccCCCCCccccccccCCCCCCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccc--cccCCCCCccce
Q 035732 266 PSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKIL--PSGLHNLRQLQE 343 (559)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~ 343 (559)
.+.. ++. ..+ ++|++|++.+|......+. ..+++|++|++++|.+.... +..+..+++|++
T Consensus 315 -~~~~-l~~------------~~l-~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~ 377 (570)
T 2z63_A 315 -KFGQ-FPT------------LKL-KSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377 (570)
T ss_dssp -BCSS-CCB------------CBC-SSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCE
T ss_pred -cccc-cCc------------ccc-cccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCE
Confidence 4443 333 233 5899999999876555433 78999999999999876532 566788999999
Q ss_pred eecccccCceecCCCCCCCCCccEEeccccccccccc-cccccCCCcceEEecC-CCCCCcC--CCCCCCCceeeecCcc
Q 035732 344 ISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALP-KGLHNLTSLQHLTIGG-ALPSLEE--DGLPTNLQLLNIEGNM 419 (559)
Q Consensus 344 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~-~l~~~~~--~~~~~~L~~L~l~~~~ 419 (559)
|++++|.. ..++..+..+++|+.|++++|......+ ..+..+++|++|++++ .+..... ...+++|++|++++|.
T Consensus 378 L~l~~n~l-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 456 (570)
T 2z63_A 378 LDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456 (570)
T ss_dssp EECCSCSE-EEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred EECCCCcc-ccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCc
Confidence 99999854 4444446778899999999997655544 4688999999999998 5554322 4567999999999998
Q ss_pred chhhhhhhcccccccCccccEEEEeecCCCceeecccccccccccccccccceeeccccccccccc-cccccCCCcCeEE
Q 035732 420 EIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLS-SSIVDLQNLTLLQ 498 (559)
Q Consensus 420 ~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~ 498 (559)
.....++ ..+..+++|+.|++++|. +..+... .+..+++|+.|++++| .+..++ ..+..+++|++|+
T Consensus 457 l~~~~~p---~~~~~l~~L~~L~l~~n~--l~~~~~~------~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ 524 (570)
T 2z63_A 457 FQENFLP---DIFTELRNLTFLDLSQCQ--LEQLSPT------AFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIW 524 (570)
T ss_dssp EGGGEEC---SCCTTCTTCCEEECTTSC--CCEECTT------TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEE
T ss_pred Cccccch---hhhhcccCCCEEECCCCc--cccCChh------hhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEE
Confidence 3323333 478899999999999984 4444333 2778899999999996 466655 4568899999999
Q ss_pred ecCCC
Q 035732 499 LWGCP 503 (559)
Q Consensus 499 l~~c~ 503 (559)
+++|+
T Consensus 525 l~~N~ 529 (570)
T 2z63_A 525 LHTNP 529 (570)
T ss_dssp CCSSC
T ss_pred ecCCc
Confidence 99964
No 16
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=6e-30 Score=281.27 Aligned_cols=441 Identities=19% Similarity=0.163 Sum_probs=287.9
Q ss_pred ccCCCccCccEEeecCCCceE-eeccCCccCcccceeeecCCcceeecCCCCCCCCCccEEEeccccCccEEeccCchhh
Q 035732 11 VSVSSLPAFCKLEIDGCKKVL-WRSATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHDELL 89 (559)
Q Consensus 11 ~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 89 (559)
..|+.+++|++|++++|.... +....+ ..+++|++|+++++ .++. +.+..+
T Consensus 42 ~~~~~l~~L~~LdLs~n~~~~~i~~~~f------------------------~~L~~L~~L~Ls~N-~l~~---~~p~~~ 93 (844)
T 3j0a_A 42 SSFPFLEQLQLLELGSQYTPLTIDKEAF------------------------RNLPNLRILDLGSS-KIYF---LHPDAF 93 (844)
T ss_dssp SSCSSCCSCSEEEECTTCCCCEECTTTT------------------------SSCTTCCEEECTTC-CCCE---ECTTSS
T ss_pred hHCcccccCeEEeCCCCCCccccCHHHh------------------------cCCCCCCEEECCCC-cCcc---cCHhHc
Confidence 579999999999999995443 222211 25677777777776 3444 555666
Q ss_pred hccCCCcEEEeccCCCccc-cccchHHHHHhhhhhccCceeEEecccCCCCcccC-CCCCCCCccceeeccCCCCccccC
Q 035732 90 QDICSLKRLTIDSCPKLQS-LVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLP-QSSFSLSSLREIEIYNCSSLVSFP 167 (559)
Q Consensus 90 ~~l~~L~~L~L~~c~~l~~-l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~ 167 (559)
+.+++|++|++++| .++. ++.. ..+..+ ++|++|++++|......+ ..+.++++|++|++++|......+
T Consensus 94 ~~l~~L~~L~Ls~n-~l~~~~~~~---~~~~~L----~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 94 QGLFHLFELRLYFC-GLSDAVLKD---GYFRNL----KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp CSCSSCCCEECTTC-CCSSCCSTT---CCCSSC----SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred cCCcccCEeeCcCC-CCCcccccC---cccccc----CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence 77777777777775 4443 2221 124445 777777777775533222 456777777777777764433333
Q ss_pred -CCCCC--CCccEEEecccCCCcccCccccc----CCCCCccEEecCCCCCccccc------------------------
Q 035732 168 -EVALP--SKLKKIRISYCGALKSLPEAWMC----DTNSSLEILNIEHCRWLTFIA------------------------ 216 (559)
Q Consensus 168 -~~~~~--~~L~~L~l~~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~------------------------ 216 (559)
.+..+ ++|+.|++++|......+..+.. ....+|++|++++|......+
T Consensus 166 ~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~ 245 (844)
T 3j0a_A 166 HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245 (844)
T ss_dssp GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC
T ss_pred HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc
Confidence 23333 56777777776644444333211 111236677776663111100
Q ss_pred -----------cc----cCCCCcceEEeecccCccccchhhccccccccccccCCccEEEEecCCCccccccCCCCCccc
Q 035732 217 -----------AV----QLPSSLKKLQIRRCDNIRTLTAEEGIQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATL 281 (559)
Q Consensus 217 -----------~~----~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 281 (559)
.. ...++|+.|+++++ .+..++..... .++ +|+.|++++ +.+.. .+. ..+
T Consensus 246 ~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n-~l~~~~~~~~~------~l~--~L~~L~L~~-n~i~~-~~~----~~~ 310 (844)
T 3j0a_A 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHG-FVFSLNSRVFE------TLK--DLKVLNLAY-NKINK-IAD----EAF 310 (844)
T ss_dssp SSSCSSSTTGGGTTTTTTTTSCCCEEECTTC-CCCEECSCCSS------SCC--CCCEEEEES-CCCCE-ECT----TTT
T ss_pred cccccccCCCChhhhhccccCCccEEECCCC-cccccChhhhh------cCC--CCCEEECCC-CcCCC-CCh----HHh
Confidence 00 11367888888874 34433322221 133 499999999 56665 222 222
Q ss_pred cccccCCCCCCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCC
Q 035732 282 ESLEVGNLPPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLP 361 (559)
Q Consensus 282 ~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 361 (559)
..+ ++|++|++++|......+..+..+++|+.|++++|.+....+..+..+++|++|++++|.. +.++.
T Consensus 311 -----~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~i~~---- 379 (844)
T 3j0a_A 311 -----YGL-DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-TTIHF---- 379 (844)
T ss_dssp -----TTC-SSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCS-CCCSS----
T ss_pred -----cCC-CCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCC-CcccC----
Confidence 334 6899999999987666677889999999999999987666666788999999999999853 33322
Q ss_pred CCCccEEecccccccccccc----------------------ccccCCCcceEEecC-CCCCCcC---CCCCCCCceeee
Q 035732 362 CAKLTRLEIYDCKRLEALPK----------------------GLHNLTSLQHLTIGG-ALPSLEE---DGLPTNLQLLNI 415 (559)
Q Consensus 362 ~~~L~~L~l~~~~~~~~~~~----------------------~l~~l~~L~~L~l~~-~l~~~~~---~~~~~~L~~L~l 415 (559)
+++|+.+++++|... .+|. .+..+++|+.|++++ .+..++. ...+++|++|++
T Consensus 380 ~~~L~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L 458 (844)
T 3j0a_A 380 IPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFL 458 (844)
T ss_dssp CCSCSEEEEESCCCC-CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEE
T ss_pred CCCcchhccCCCCcc-cccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccC
Confidence 445666666665432 2221 245789999999999 6665433 334689999999
Q ss_pred cCccchhhhhhh--cccccccCccccEEEEeecCCCceeecccccccccccccccccceeeccccccccccccccccCCC
Q 035732 416 EGNMEIWKSMIE--RGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSSSIVDLQN 493 (559)
Q Consensus 416 ~~~~~l~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 493 (559)
++|. +...... .+..+.++++|+.|++++|. +..++... +..+++|+.|++++ +.++.++..... ++
T Consensus 459 s~N~-l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~------~~~l~~L~~L~Ls~-N~l~~l~~~~~~-~~ 527 (844)
T 3j0a_A 459 GENM-LQLAWETELCWDVFEGLSHLQVLYLNHNY--LNSLPPGV------FSHLTALRGLSLNS-NRLTVLSHNDLP-AN 527 (844)
T ss_dssp ESCC-CSSSCCSCCCSSCSSCBCCEECCCCCHHH--HTTCCTTS------SSSCCSCSEEEEES-CCCSSCCCCCCC-SC
T ss_pred CCCc-cccccccccchhhhcCcccccEEECCCCc--ccccChhH------ccchhhhheeECCC-CCCCccChhhhh-cc
Confidence 9998 4322110 11357889999999999983 55555543 78899999999999 567777764333 89
Q ss_pred cCeEEecCCCCCcccCCCCCCCCceEEEecCChh
Q 035732 494 LTLLQLWGCPKLKYFPKKGLPSSLLELDIVGCPL 527 (559)
Q Consensus 494 L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~ 527 (559)
|+.|++++ |+++.+++..+ .+|+.+++++||.
T Consensus 528 L~~L~Ls~-N~l~~~~~~~~-~~L~~l~l~~Np~ 559 (844)
T 3j0a_A 528 LEILDISR-NQLLAPNPDVF-VSLSVLDITHNKF 559 (844)
T ss_dssp CCEEEEEE-ECCCCCCSCCC-SSCCEEEEEEECC
T ss_pred ccEEECCC-CcCCCCChhHh-CCcCEEEecCCCc
Confidence 99999999 67888777544 5899999998764
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1.1e-29 Score=274.47 Aligned_cols=343 Identities=16% Similarity=0.164 Sum_probs=257.5
Q ss_pred cccCCCCCCCCccceeeccCCCCcc-----------------ccCC-CC--CCCCccEEEecccCCCcccCcccccCCCC
Q 035732 140 VKLPQSSFSLSSLREIEIYNCSSLV-----------------SFPE-VA--LPSKLKKIRISYCGALKSLPEAWMCDTNS 199 (559)
Q Consensus 140 ~~~~~~~~~l~~L~~L~l~~~~~~~-----------------~~~~-~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 199 (559)
..+|..+.++++|++|++++|.... .+|. ++ .+++|++|++++|.....+|..+ ..++
T Consensus 438 ~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l--~~L~ 515 (876)
T 4ecn_A 438 TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL--YDLP 515 (876)
T ss_dssp EEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG--GGCS
T ss_pred cchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH--hCCC
Confidence 4488888899999999999886555 2664 55 78999999999998778888665 3558
Q ss_pred CccEEecCCCCCcc--ccccc--------cCCCCcceEEeecccCccccch--hhccccccccccccCCccEEEEecCCC
Q 035732 200 SLEILNIEHCRWLT--FIAAV--------QLPSSLKKLQIRRCDNIRTLTA--EEGIQCSSGRRYTSSLLEELEIWDCPS 267 (559)
Q Consensus 200 ~L~~L~l~~~~~~~--~~~~~--------~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~ 267 (559)
+|++|++++|..++ .+|.. ..+++|+.|+++++ .+..+|. .+.. ++ +|+.|++++ +.
T Consensus 516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~-------L~--~L~~L~Ls~-N~ 584 (876)
T 4ecn_A 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQK-------MV--KLGLLDCVH-NK 584 (876)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTT-------CT--TCCEEECTT-SC
T ss_pred CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhc-------CC--CCCEEECCC-CC
Confidence 89999999886343 24432 34568999999984 4556766 4433 33 499999998 45
Q ss_pred ccccccCCCCCccccccccCCCCCCccEEEEcCCCCccchHHhhccCCC-CceEEeeecCccccccccCCCCC--cccee
Q 035732 268 LTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKVESIAERLDNNTS-LEKISIKRCGTLKILPSGLHNLR--QLQEI 344 (559)
Q Consensus 268 l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~l~--~L~~L 344 (559)
+.. +| .+ ..+ ++|+.|++++|... .+|..+..+++ |++|++++|.+. .+|..+...+ +|+.|
T Consensus 585 l~~-lp------~~-----~~L-~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L 649 (876)
T 4ecn_A 585 VRH-LE------AF-----GTN-VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSV 649 (876)
T ss_dssp CCB-CC------CC-----CTT-SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEE
T ss_pred ccc-ch------hh-----cCC-CcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEE
Confidence 553 33 22 334 68999999998865 77778899998 999999999876 6787776654 49999
Q ss_pred ecccccCceecCCC-----CCCCCCccEEecccccccccccccc-ccCCCcceEEecC-CCCCCcCCCC---------CC
Q 035732 345 SIQICENLVSFPEG-----GLPCAKLTRLEIYDCKRLEALPKGL-HNLTSLQHLTIGG-ALPSLEEDGL---------PT 408 (559)
Q Consensus 345 ~l~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~-~l~~~~~~~~---------~~ 408 (559)
++++|.....+|.. ....++|+.|++++|... .+|..+ ..+++|+.|++++ .+..++.... ++
T Consensus 650 ~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~ 728 (876)
T 4ecn_A 650 DFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTY 728 (876)
T ss_dssp ECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGG
T ss_pred ECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccC
Confidence 99999664433321 123458999999999754 677655 5899999999999 7777765321 23
Q ss_pred CCceeeecCccchhhhhhhcccccc--cCccccEEEEeecCCCceeecccccccccccccccccceeeccc------ccc
Q 035732 409 NLQLLNIEGNMEIWKSMIERGRGFH--RFSSLRRLTISRCDDDMVSFPLENKRLGTALPLLASLTSLGISR------FPN 480 (559)
Q Consensus 409 ~L~~L~l~~~~~l~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~------~~~ 480 (559)
+|++|++++|. +.. ++. .+. .+++|+.|++++|. +..++. .+..+++|+.|++++ |..
T Consensus 729 ~L~~L~Ls~N~-L~~-lp~---~l~~~~l~~L~~L~Ls~N~--L~~lp~-------~l~~L~~L~~L~Ls~N~~ls~N~l 794 (876)
T 4ecn_A 729 LLTTIDLRFNK-LTS-LSD---DFRATTLPYLSNMDVSYNC--FSSFPT-------QPLNSSQLKAFGIRHQRDAEGNRI 794 (876)
T ss_dssp GCCEEECCSSC-CCC-CCG---GGSTTTCTTCCEEECCSSC--CSSCCC-------GGGGCTTCCEEECCCCBCTTCCBC
T ss_pred CccEEECCCCC-Ccc-chH---HhhhccCCCcCEEEeCCCC--CCccch-------hhhcCCCCCEEECCCCCCcccccc
Confidence 89999999998 553 332 454 89999999999985 334554 255789999999977 455
Q ss_pred ccccccccccCCCcCeEEecCCCCCcccCCCCCCCCceEEEecCChh
Q 035732 481 LERLSSSIVDLQNLTLLQLWGCPKLKYFPKKGLPSSLLELDIVGCPL 527 (559)
Q Consensus 481 l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~ 527 (559)
...+|..+..+++|++|++++| .+..+|.. +.++|+.|++++|+.
T Consensus 795 ~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~-l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 795 LRQWPTGITTCPSLIQLQIGSN-DIRKVDEK-LTPQLYILDIADNPN 839 (876)
T ss_dssp CCCCCTTGGGCSSCCEEECCSS-CCCBCCSC-CCSSSCEEECCSCTT
T ss_pred cccChHHHhcCCCCCEEECCCC-CCCccCHh-hcCCCCEEECCCCCC
Confidence 6678888899999999999995 67889886 447999999999975
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=1.1e-29 Score=270.07 Aligned_cols=372 Identities=16% Similarity=0.189 Sum_probs=262.0
Q ss_pred CCccccccchHHHHHhhhhhccCceeEEecccCCCCcc------------------cCCCCC--CCCccceeeccCCCCc
Q 035732 104 PKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVK------------------LPQSSF--SLSSLREIEIYNCSSL 163 (559)
Q Consensus 104 ~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~------------------~~~~~~--~l~~L~~L~l~~~~~~ 163 (559)
+.++.+|. .++++ ++|++|++++|.. .. +|..+. ++++|++|++++|...
T Consensus 193 n~l~~ip~-----~l~~l----~~L~~L~Ls~n~l-~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~ 262 (636)
T 4eco_A 193 NNITFVSK-----AVMRL----TKLRQFYMGNSPF-VAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL 262 (636)
T ss_dssp CEEEEECG-----GGGGC----TTCCEEEEESCCC-CGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC
T ss_pred CCCccCCH-----HHhcc----cCCCEEECcCCcc-ccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC
Confidence 35555543 36667 8888888888875 44 888888 8888888888888777
Q ss_pred cccC-CCCCCCCccEEEecccCCCc--ccCccccc----CCCCCccEEecCCCCCcccccc---ccCCCCcceEEeeccc
Q 035732 164 VSFP-EVALPSKLKKIRISYCGALK--SLPEAWMC----DTNSSLEILNIEHCRWLTFIAA---VQLPSSLKKLQIRRCD 233 (559)
Q Consensus 164 ~~~~-~~~~~~~L~~L~l~~~~~~~--~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~ 233 (559)
+.+| .+..+++|++|++++|..++ .+|..+.. ..+++|++|++++|. ++.++. ...+++|+.|+++++.
T Consensus 263 ~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~ 341 (636)
T 4eco_A 263 TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQ 341 (636)
T ss_dssp SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCC
T ss_pred ccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCc
Confidence 7777 47788888888888887333 46655321 123678888888885 446665 3667888888888743
Q ss_pred Ccc-ccchhhccccccccccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCC-ccEEEEcCCCCccchHHhh
Q 035732 234 NIR-TLTAEEGIQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPS-LKSLYVYGCSKVESIAERL 311 (559)
Q Consensus 234 ~l~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~-L~~L~l~~~~~~~~~~~~~ 311 (559)
+. .+| .+.. ++ +|++|++++ +.++. +| ..+. .+ ++ |++|++++|... .+|..+
T Consensus 342 -l~g~ip-~~~~-------l~--~L~~L~L~~-N~l~~-lp-----~~l~-----~l-~~~L~~L~Ls~N~l~-~lp~~~ 396 (636)
T 4eco_A 342 -LEGKLP-AFGS-------EI--KLASLNLAY-NQITE-IP-----ANFC-----GF-TEQVENLSFAHNKLK-YIPNIF 396 (636)
T ss_dssp -CEEECC-CCEE-------EE--EESEEECCS-SEEEE-CC-----TTSE-----EE-CTTCCEEECCSSCCS-SCCSCC
T ss_pred -Cccchh-hhCC-------CC--CCCEEECCC-Ccccc-cc-----Hhhh-----hh-cccCcEEEccCCcCc-ccchhh
Confidence 44 555 3222 22 388888888 45543 33 3333 33 46 999999998755 666666
Q ss_pred ccCC--CCceEEeeecCccccccccCC-------CCCccceeecccccCceecCCCCC-CCCCccEEecccccccccccc
Q 035732 312 DNNT--SLEKISIKRCGTLKILPSGLH-------NLRQLQEISIQICENLVSFPEGGL-PCAKLTRLEIYDCKRLEALPK 381 (559)
Q Consensus 312 ~~l~--~L~~L~l~~~~~~~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~ 381 (559)
..+. +|++|++++|.+....|..+. .+++|++|++++|.. ..+|.... .+++|+.|++++|... .+|.
T Consensus 397 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l-~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~ 474 (636)
T 4eco_A 397 DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI-SKFPKELFSTGSPLSSINLMGNMLT-EIPK 474 (636)
T ss_dssp CTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCC-CSCCTHHHHTTCCCSEEECCSSCCS-BCCS
T ss_pred hhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCcc-CcCCHHHHccCCCCCEEECCCCCCC-CcCH
Confidence 6544 899999999988887777777 778999999999854 46665433 4678999999998755 6665
Q ss_pred cc-cc-------CCCcceEEecC-CCCCCcC-CC--CCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecC--
Q 035732 382 GL-HN-------LTSLQHLTIGG-ALPSLEE-DG--LPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCD-- 447 (559)
Q Consensus 382 ~l-~~-------l~~L~~L~l~~-~l~~~~~-~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~-- 447 (559)
.. .. +++|+.|++++ .+..++. .. .+++|++|++++|. ++. ++ ..+..+++|+.|++++|.
T Consensus 475 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~-ip---~~~~~l~~L~~L~Ls~N~~l 549 (636)
T 4eco_A 475 NSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNS-FSK-FP---TQPLNSSTLKGFGIRNQRDA 549 (636)
T ss_dssp SSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSC-CSS-CC---CGGGGCSSCCEEECCSCBCT
T ss_pred HHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCC-CCC-cC---hhhhcCCCCCEEECCCCccc
Confidence 43 22 23899999998 7777765 32 67899999999998 554 33 367789999999997643
Q ss_pred ---CCceeecccccccccccccccccceeeccccccccccccccccCCCcCeEEecCCCCCcccCCCCCC----------
Q 035732 448 ---DDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSSSIVDLQNLTLLQLWGCPKLKYFPKKGLP---------- 514 (559)
Q Consensus 448 ---~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~---------- 514 (559)
.....+|. .+..+++|++|++++|. +..+|..+. ++|++|++++| .+..+...++.
T Consensus 550 s~N~l~~~~p~-------~l~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l 618 (636)
T 4eco_A 550 QGNRTLREWPE-------GITLCPSLTQLQIGSND-IRKVNEKIT--PNISVLDIKDN-PNISIDLSYVCPYIEAGMYML 618 (636)
T ss_dssp TCCBCCCCCCT-------TGGGCSSCCEEECCSSC-CCBCCSCCC--TTCCEEECCSC-TTCEEECTTTHHHHHTTCCEE
T ss_pred ccCcccccChH-------HHhcCCCCCEEECCCCc-CCccCHhHh--CcCCEEECcCC-CCccccHHhcchhhhccccee
Confidence 11223333 36678999999999955 588988654 89999999995 56665543331
Q ss_pred CCceEEEecCChhhh
Q 035732 515 SSLLELDIVGCPLIE 529 (559)
Q Consensus 515 ~~L~~L~l~~c~~l~ 529 (559)
...+..++++|+.++
T Consensus 619 ~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 619 FYDKTQDIRGCDALD 633 (636)
T ss_dssp ECCTTSEEESCGGGC
T ss_pred ecCCccccCCCcccc
Confidence 223445778888764
No 19
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=8.8e-29 Score=260.24 Aligned_cols=406 Identities=16% Similarity=0.093 Sum_probs=225.0
Q ss_pred CCccEEEeccccCccEEeccCchhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccCC
Q 035732 65 PKLEELEIKNIKNETYIWKSHDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLPQ 144 (559)
Q Consensus 65 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~~ 144 (559)
++|++|+++++ .++. +++..++.+++|++|+++++ .++.++++ .+..+ ++|++|++++|.. ..+|.
T Consensus 52 ~~L~~L~Ls~N-~i~~---~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~----~~~~l----~~L~~L~Ls~N~l-~~lp~ 117 (562)
T 3a79_B 52 PRTKALSLSQN-SISE---LRMPDISFLSELRVLRLSHN-RIRSLDFH----VFLFN----QDLEYLDVSHNRL-QNISC 117 (562)
T ss_dssp TTCCEEECCSS-CCCC---CCGGGTTTCTTCCEEECCSC-CCCEECTT----TTTTC----TTCCEEECTTSCC-CEECS
T ss_pred CCcCEEECCCC-Cccc---cChhhhccCCCccEEECCCC-CCCcCCHH----HhCCC----CCCCEEECCCCcC-CccCc
Confidence 56777777766 3443 55556667777777777765 56665443 24444 6777777777654 46665
Q ss_pred CCCCCCccceeeccCCCCcc-ccC-CCCCCCCccEEEecccCCCcccCcccccCCCCCc--cEEecCCCCC--ccccccc
Q 035732 145 SSFSLSSLREIEIYNCSSLV-SFP-EVALPSKLKKIRISYCGALKSLPEAWMCDTNSSL--EILNIEHCRW--LTFIAAV 218 (559)
Q Consensus 145 ~~~~l~~L~~L~l~~~~~~~-~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~ 218 (559)
. .+++|++|++++|.... ..| .+..+++|++|++++|.. ..... ..+++| ++|++++|.. ....+..
T Consensus 118 ~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l-~~~~~----~~l~~L~L~~L~L~~n~l~~~~~~~~~ 190 (562)
T 3a79_B 118 C--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF-RQLDL----LPVAHLHLSCILLDLVSYHIKGGETES 190 (562)
T ss_dssp C--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC-CTTTT----GGGTTSCEEEEEEEESSCCCCSSSCCE
T ss_pred c--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcc-ccCch----hhhhhceeeEEEeecccccccccCccc
Confidence 5 67777777777764332 122 356667777777777653 22111 112333 7777766643 1111111
Q ss_pred -cCCCCcce--EEeecccCccccchhhccccccccccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCCccE
Q 035732 219 -QLPSSLKK--LQIRRCDNIRTLTAEEGIQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKS 295 (559)
Q Consensus 219 -~~~~~L~~--L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~ 295 (559)
..+. .+. +.+.++.....++.... ..++ +|+.+++++..... ..++..+..+ ..+ ++++.
T Consensus 191 l~~l~-~~~l~l~l~~n~~~~~~~~~~~------~~l~--~L~~L~l~~n~~~~-----~~l~~~~~~l--~~l-~~L~~ 253 (562)
T 3a79_B 191 LQIPN-TTVLHLVFHPNSLFSVQVNMSV------NALG--HLQLSNIKLNDENC-----QRLMTFLSEL--TRG-PTLLN 253 (562)
T ss_dssp EEECC-EEEEEEEECSSSCCCCCCEEEE------SSEE--EEEEEEEECCSTTH-----HHHHHHHHHH--HSC-SSCEE
T ss_pred ccccC-cceEEEEecCccchhhhhhhcc------cccc--eEEEeccccccccc-----chHHHHHHHH--hcc-CcceE
Confidence 0000 011 12222111111111000 0011 25555555421000 0000000000 111 23333
Q ss_pred EEEcCCCCccc----hHHhhccCCCCceEEeeecCccccccccC-----CCC--------------------------Cc
Q 035732 296 LYVYGCSKVES----IAERLDNNTSLEKISIKRCGTLKILPSGL-----HNL--------------------------RQ 340 (559)
Q Consensus 296 L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----~~l--------------------------~~ 340 (559)
+++.++..... .+.. ....+|++|++++|.+.+.+|..+ ..+ .+
T Consensus 254 L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~ 332 (562)
T 3a79_B 254 VTLQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMN 332 (562)
T ss_dssp EEEEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCC
T ss_pred EEecCCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCc
Confidence 43333221110 1111 112244444444444333333322 111 34
Q ss_pred cceeecccccCceecCCCCCCCCCccEEeccccccccccccccccCCCcceEEecC-CCCCCcC----CCCCCCCceeee
Q 035732 341 LQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEE----DGLPTNLQLLNI 415 (559)
Q Consensus 341 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~----~~~~~~L~~L~l 415 (559)
|++|++++|.... ++ ....+++|+.|++++|......|..+..+++|+.|++++ .++.++. ...+++|++|++
T Consensus 333 L~~L~l~~n~~~~-~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l 410 (562)
T 3a79_B 333 IKMLSISDTPFIH-MV-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDV 410 (562)
T ss_dssp CSEEEEESSCCCC-CC-CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEEC
T ss_pred ceEEEccCCCccc-cc-CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEEC
Confidence 6667776664321 11 114567899999999987776788889999999999998 6665542 567789999999
Q ss_pred cCccchhhhhhhcccccccCccccEEEEeecCCCceeecccccccccccccc-cccceeeccccccccccccccccCCCc
Q 035732 416 EGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTALPLL-ASLTSLGISRFPNLERLSSSIVDLQNL 494 (559)
Q Consensus 416 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~L 494 (559)
++|. +...++. ..+..+++|+.|++++|.... .. +..+ ++|+.|++++| .++.+|.++..+++|
T Consensus 411 ~~N~-l~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~~----------~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L 475 (562)
T 3a79_B 411 SLNS-LNSHAYD--RTCAWAESILVLNLSSNMLTG-SV----------FRCLPPKVKVLDLHNN-RIMSIPKDVTHLQAL 475 (562)
T ss_dssp TTSC-CBSCCSS--CCCCCCTTCCEEECCSSCCCG-GG----------GSSCCTTCSEEECCSS-CCCCCCTTTTSSCCC
T ss_pred CCCc-CCCccCh--hhhcCcccCCEEECCCCCCCc-ch----------hhhhcCcCCEEECCCC-cCcccChhhcCCCCC
Confidence 9998 4443333 357788999999999885321 11 2223 68999999995 688898887789999
Q ss_pred CeEEecCCCCCcccCCC--CCCCCceEEEecCChh
Q 035732 495 TLLQLWGCPKLKYFPKK--GLPSSLLELDIVGCPL 527 (559)
Q Consensus 495 ~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~~ 527 (559)
++|++++ ++++.+|.. ..+++|+.|++++|+.
T Consensus 476 ~~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 476 QELNVAS-NQLKSVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp SEEECCS-SCCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred CEEECCC-CCCCCCCHHHHhcCCCCCEEEecCCCc
Confidence 9999999 678898885 2367999999998864
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=9.6e-28 Score=250.23 Aligned_cols=434 Identities=16% Similarity=0.097 Sum_probs=292.9
Q ss_pred CCccEEEeccccCccEEeccCchhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccCC
Q 035732 65 PKLEELEIKNIKNETYIWKSHDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLPQ 144 (559)
Q Consensus 65 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~~ 144 (559)
++|++|+++++ .++. +++..+..+++|++|+++++ .++.+.+. .+..+ ++|++|++++|.. ..+|.
T Consensus 21 ~~L~~L~Ls~n-~i~~---~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~----~~~~l----~~L~~L~Ls~N~l-~~lp~ 86 (520)
T 2z7x_B 21 QKTTILNISQN-YISE---LWTSDILSLSKLRILIISHN-RIQYLDIS----VFKFN----QELEYLDLSHNKL-VKISC 86 (520)
T ss_dssp TTCSEEECCSS-CCCC---CCHHHHTTCTTCCEEECCSS-CCCEEEGG----GGTTC----TTCCEEECCSSCC-CEEEC
T ss_pred ccccEEECCCC-cccc---cChhhccccccccEEecCCC-ccCCcChH----Hhhcc----cCCCEEecCCCce-eecCc
Confidence 68999999988 4554 66677888999999999986 67777554 45666 8999999999865 67777
Q ss_pred CCCCCCccceeeccCCCCcc-ccC-CCCCCCCccEEEecccCCCcccCcccccCCCCCc--cEEecCCCCC--ccccccc
Q 035732 145 SSFSLSSLREIEIYNCSSLV-SFP-EVALPSKLKKIRISYCGALKSLPEAWMCDTNSSL--EILNIEHCRW--LTFIAAV 218 (559)
Q Consensus 145 ~~~~l~~L~~L~l~~~~~~~-~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~ 218 (559)
. .+++|++|++++|.... .+| .++.+++|++|++++|.. ... .+ ..+++| ++|++++|.. ....+
T Consensus 87 ~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l-~~~--~~--~~l~~L~L~~L~l~~n~l~~~~~~~-- 157 (520)
T 2z7x_B 87 H--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL-EKS--SV--LPIAHLNISKVLLVLGETYGEKEDP-- 157 (520)
T ss_dssp C--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSC-CGG--GG--GGGTTSCEEEEEEEECTTTTSSCCT--
T ss_pred c--ccCCccEEeccCCccccccchhhhccCCcceEEEecCccc-chh--hc--cccccceeeEEEeeccccccccccc--
Confidence 6 78999999999986544 344 478889999999999873 321 11 233556 9999988854 22222
Q ss_pred cCCCCcc----eEEeecccCccccchhhccccccccccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCCcc
Q 035732 219 QLPSSLK----KLQIRRCDNIRTLTAEEGIQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLK 294 (559)
Q Consensus 219 ~~~~~L~----~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~ 294 (559)
..+..++ .+.+.++.....++.... ..++ .|+.|+++++..... + ..+.+.+.. +..+ ++|+
T Consensus 158 ~~l~~l~~~~l~l~l~~n~~~~~~~~~~~------~~l~--~L~~L~l~~n~~~~~-~--~~~~~~~~~--l~~l-~~L~ 223 (520)
T 2z7x_B 158 EGLQDFNTESLHIVFPTNKEFHFILDVSV------KTVA--NLELSNIKCVLEDNK-C--SYFLSILAK--LQTN-PKLS 223 (520)
T ss_dssp TTTTTCCEEEEEEECCSSSCCCCCCCCCC------TTCS--EEEECCEEECCSTTT-T--HHHHHHHHG--GGGC-TTCC
T ss_pred ccccccccceEEEEeccCcchhhhhhhhh------hccc--ceeeccccccccccc-c--ceeecchhh--hccc-cchh
Confidence 1122222 333444332222222111 1122 388888887421000 0 001111111 1344 5899
Q ss_pred EEEEcCCCCccchHHhh---ccCCCCceEEeeecCccccccccC-----CCCCccceeecccccCceecCCC-CC---CC
Q 035732 295 SLYVYGCSKVESIAERL---DNNTSLEKISIKRCGTLKILPSGL-----HNLRQLQEISIQICENLVSFPEG-GL---PC 362 (559)
Q Consensus 295 ~L~l~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~~~~~-~~---~~ 362 (559)
.|++.++......+..+ ...++|++|++++|.+.+.+|..+ ..+++|+.+++++|.. .+|.. .. ..
T Consensus 224 ~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~ 301 (520)
T 2z7x_B 224 NLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSN 301 (520)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHT
T ss_pred hccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhccccc
Confidence 99998876544322211 135799999999998887788887 8899999999999865 45521 11 11
Q ss_pred CCccEEeccccccccccccccccCCCcceEEecC-CCCC-C-cCCCCCCCCceeeecCccchhh--hhhhcccccccCcc
Q 035732 363 AKLTRLEIYDCKRLEALPKGLHNLTSLQHLTIGG-ALPS-L-EEDGLPTNLQLLNIEGNMEIWK--SMIERGRGFHRFSS 437 (559)
Q Consensus 363 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~-~-~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~~l~~ 437 (559)
.+|+.|++++|.... .+ ....+++|++|++++ .+.. + .....+++|++|++++|. +.. .++ ..+..+++
T Consensus 302 ~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~---~~~~~l~~ 375 (520)
T 2z7x_B 302 MNIKNFTVSGTRMVH-ML-CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIA---EMTTQMKS 375 (520)
T ss_dssp CCCSEEEEESSCCCC-CC-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC-CCBHHHHH---HHHTTCTT
T ss_pred CceeEEEcCCCcccc-cc-chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc-cCccccch---HHHhhCCC
Confidence 379999999987533 21 237889999999999 6665 2 335678999999999998 443 222 25789999
Q ss_pred ccEEEEeecCCCcee-ecccccccccccccccccceeeccccccccccccccccCCCcCeEEecCCCCCcccCCC-CCCC
Q 035732 438 LRRLTISRCDDDMVS-FPLENKRLGTALPLLASLTSLGISRFPNLERLSSSIVDLQNLTLLQLWGCPKLKYFPKK-GLPS 515 (559)
Q Consensus 438 L~~L~l~~~~~~~~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~ 515 (559)
|+.|++++|. +.. ++... +..+++|+.|++++|.....+|..+. ++|++|++++ ++++.+|.. ...+
T Consensus 376 L~~L~Ls~N~--l~~~l~~~~------~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~-N~l~~ip~~~~~l~ 444 (520)
T 2z7x_B 376 LQQLDISQNS--VSYDEKKGD------CSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHS-NKIKSIPKQVVKLE 444 (520)
T ss_dssp CCEEECCSSC--CBCCGGGCS------CCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCS-SCCCCCCGGGGGCT
T ss_pred CCEEECCCCc--CCcccccch------hccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCC-CcccccchhhhcCC
Confidence 9999999985 333 55432 66789999999999765455664332 7999999999 578888873 3468
Q ss_pred CceEEEecCChhhhhhhhccCcccccccCCCceeEEeceEecCC
Q 035732 516 SLLELDIVGCPLIEEKCRKDGGQYWDLLTHIPYVLIAGKFVFGD 559 (559)
Q Consensus 516 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (559)
+|++|++++|. ++.+ ....+..+.++..+++.++.+.+|
T Consensus 445 ~L~~L~L~~N~-l~~l----~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 445 ALQELNVASNQ-LKSV----PDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp TCCEEECCSSC-CCCC----CTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCEEECCCCc-CCcc----CHHHhccCCcccEEECcCCCCccc
Confidence 99999999984 3322 112466778888899988877654
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=2.9e-26 Score=245.35 Aligned_cols=451 Identities=16% Similarity=0.099 Sum_probs=275.4
Q ss_pred cCccEEeecCCCceEeeccCCccCcccceeeecCCcceeecCCCCCCCCCccEEEeccccCccEEeccCchhhhccCCCc
Q 035732 17 PAFCKLEIDGCKKVLWRSATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHDELLQDICSLK 96 (559)
Q Consensus 17 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~ 96 (559)
+++++|+++++....++...+ ..+++|++|+++++ .++. ++++.|+++++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f------------------------~~l~~L~~L~Ls~N-~i~~---i~~~~f~~L~~L~ 103 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSF------------------------FSFPELQVLDLSRC-EIQT---IEDGAYQSLSHLS 103 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTT------------------------TTCTTCCEEECTTC-CCCE---ECTTTTTTCTTCC
T ss_pred cCCCEEEeeCCCCCCCCHHHH------------------------hCCCCCCEEECCCC-cCCC---cChhHhcCCCCCC
Confidence 478888888887666554322 36889999999988 5666 7777888899999
Q ss_pred EEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccC-CCCCCCCccceeeccCCCCcc-ccC-CCCCCC
Q 035732 97 RLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLP-QSSFSLSSLREIEIYNCSSLV-SFP-EVALPS 173 (559)
Q Consensus 97 ~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~-~~~-~~~~~~ 173 (559)
+|+|+++ .++.++.+ .+..+ ++|++|++++|.. ..+| ..++++++|++|++++|.... ..| .+..++
T Consensus 104 ~L~Ls~N-~l~~l~~~----~f~~L----~~L~~L~Ls~N~l-~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~ 173 (635)
T 4g8a_A 104 TLILTGN-PIQSLALG----AFSGL----SSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 173 (635)
T ss_dssp EEECTTC-CCCEECGG----GGTTC----TTCCEEECTTSCC-CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT
T ss_pred EEEccCC-cCCCCCHH----HhcCC----CCCCEEECCCCcC-CCCChhhhhcCcccCeeccccCccccCCCchhhccch
Confidence 9999986 78888765 35666 8999999999865 5555 457889999999999885432 233 356788
Q ss_pred CccEEEecccCCCcccCcccccC-CC-CCccEEecCCCCCccccccc--------------------------cCCCCcc
Q 035732 174 KLKKIRISYCGALKSLPEAWMCD-TN-SSLEILNIEHCRWLTFIAAV--------------------------QLPSSLK 225 (559)
Q Consensus 174 ~L~~L~l~~~~~~~~~~~~~~~~-~~-~~L~~L~l~~~~~~~~~~~~--------------------------~~~~~L~ 225 (559)
+|++|++++|......+..+... .. .....++++.+. +..++.. .....++
T Consensus 174 ~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~-l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~ 252 (635)
T 4g8a_A 174 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLE 252 (635)
T ss_dssp TCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCC-CCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCE
T ss_pred hhhhhcccCccccccccccccchhhhhhhhhhhhcccCc-ccccCcccccchhhhhhhhhcccccccccchhhcCCcccc
Confidence 99999999887332222221100 00 112233333332 1111111 1111222
Q ss_pred eEEeec--ccC---ccccchhhcc---------------------ccccccccccCCccEEEEecCCCccccccCCCCCc
Q 035732 226 KLQIRR--CDN---IRTLTAEEGI---------------------QCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPA 279 (559)
Q Consensus 226 ~L~l~~--~~~---l~~~~~~~~~---------------------~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 279 (559)
...+.. ... +......... ........ ..++.+.+.+. .+.. ........
T Consensus 253 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~--~~l~~l~~~~~-~~~~-~~~~~~~~ 328 (635)
T 4g8a_A 253 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCL--TNVSSFSLVSV-TIER-VKDFSYNF 328 (635)
T ss_dssp EEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGG--TTCSEEEEESC-EEEE-CGGGGSCC
T ss_pred cccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhh--ccccccccccc-cccc-ccccccch
Confidence 111110 000 0000000000 00000001 12344444331 1111 00000000
Q ss_pred ccccc----------ccCCCCCCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccc--cccccCCCCCccceeecc
Q 035732 280 TLESL----------EVGNLPPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLK--ILPSGLHNLRQLQEISIQ 347 (559)
Q Consensus 280 ~~~~l----------~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~ 347 (559)
.+..+ ....+ ..++.+.+..+...... ....+++|+.+++++|.... ..+.....+.+|+.+++.
T Consensus 329 ~L~~L~l~~~~~~~~~~~~l-~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~ 405 (635)
T 4g8a_A 329 GWQHLELVNCKFGQFPTLKL-KSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLS 405 (635)
T ss_dssp CCSEEEEESCEESSCCCCBC-TTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECC
T ss_pred hhhhhhcccccccCcCcccc-hhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcc
Confidence 00000 00112 35666666555433221 23467788888888876543 234445567788888888
Q ss_pred cccCceecCCCCCCCCCccEEeccccccccccc-cccccCCCcceEEecC-CCCCCcC--CCCCCCCceeeecCccchhh
Q 035732 348 ICENLVSFPEGGLPCAKLTRLEIYDCKRLEALP-KGLHNLTSLQHLTIGG-ALPSLEE--DGLPTNLQLLNIEGNMEIWK 423 (559)
Q Consensus 348 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~-~l~~~~~--~~~~~~L~~L~l~~~~~l~~ 423 (559)
.+.. ...+..+..+++|+.+++.++......+ ..+..+++++.++++. .+..+.. ...+++|++|++++|.....
T Consensus 406 ~~~~-~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~ 484 (635)
T 4g8a_A 406 FNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 484 (635)
T ss_dssp SCSE-EEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred cccc-ccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccc
Confidence 7743 4445566677899999998887655544 4578899999999988 5544332 45678999999999985544
Q ss_pred hhhhcccccccCccccEEEEeecCCCceeecccccccccccccccccceeecccccccccccc-ccccCCCcCeEEecCC
Q 035732 424 SMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSS-SIVDLQNLTLLQLWGC 502 (559)
Q Consensus 424 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~c 502 (559)
..+ ..+..+++|+.|++++|. +..++... |..+++|++|++++| .+..++. .+..+++|++|++++
T Consensus 485 ~~~---~~~~~l~~L~~L~Ls~N~--L~~l~~~~------f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~- 551 (635)
T 4g8a_A 485 FLP---DIFTELRNLTFLDLSQCQ--LEQLSPTA------FNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSL- 551 (635)
T ss_dssp EEC---SCCTTCTTCCEEECTTSC--CCEECTTT------TTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTT-
T ss_pred cCc---hhhhhccccCEEECCCCc--cCCcChHH------HcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCC-
Confidence 333 478899999999999984 56665543 888999999999995 5666654 578899999999999
Q ss_pred CCCcccCCCCC---CCCceEEEecCChh
Q 035732 503 PKLKYFPKKGL---PSSLLELDIVGCPL 527 (559)
Q Consensus 503 ~~l~~l~~~~~---~~~L~~L~l~~c~~ 527 (559)
|+++.+++..+ +++|+.|++++||-
T Consensus 552 N~l~~~~~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 552 NHIMTSKKQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp SCCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred CcCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence 68888877433 57999999987754
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=1.2e-26 Score=237.82 Aligned_cols=357 Identities=13% Similarity=0.108 Sum_probs=181.5
Q ss_pred cCccEEeecCCCceEeeccCCccCcccceeeecCCcceeecCCCCCCCCCccEEEeccccCccEEeccCchhhhccCCCc
Q 035732 17 PAFCKLEIDGCKKVLWRSATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHDELLQDICSLK 96 (559)
Q Consensus 17 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~ 96 (559)
++|++|++++|......... +..+++|++|+++++.-... +++..+..+++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~------------------------~~~l~~L~~L~L~~n~~~~~---i~~~~~~~l~~L~ 82 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETS------------------------FSRLQDLQFLKVEQQTPGLV---IRNNTFRGLSSLI 82 (455)
T ss_dssp TTCCEEECCSSCCCEECTTT------------------------TSSCTTCCEEECCCCSTTCE---ECTTTTTTCTTCC
T ss_pred CccCEEEecCCccCcCChhH------------------------hccCccccEEECcCCcccce---ECcccccccccCC
Confidence 66777887777655433221 12577777777777643223 5556677778888
Q ss_pred EEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccCCC--CCCCCccceeeccCCCCccccCC--CCCC
Q 035732 97 RLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLPQS--SFSLSSLREIEIYNCSSLVSFPE--VALP 172 (559)
Q Consensus 97 ~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~--~~~~ 172 (559)
+|+++++ .++.+.+. .+..+ ++|++|++++|.....++.. +..+++|++|++++|......|. +..+
T Consensus 83 ~L~Ls~n-~l~~~~~~----~~~~l----~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l 153 (455)
T 3v47_A 83 ILKLDYN-QFLQLETG----AFNGL----ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM 153 (455)
T ss_dssp EEECTTC-TTCEECTT----TTTTC----TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGC
T ss_pred EEeCCCC-ccCccChh----hccCc----ccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCC
Confidence 8888775 45555443 34555 77788888777653333332 66777788888877755444443 5667
Q ss_pred CCccEEEecccCCCcccCcccccCCCCCccEEecCCCCCccccccc----------cCCCCcceEEeecccCccccchhh
Q 035732 173 SKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCRWLTFIAAV----------QLPSSLKKLQIRRCDNIRTLTAEE 242 (559)
Q Consensus 173 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----------~~~~~L~~L~l~~~~~l~~~~~~~ 242 (559)
++|++|++++|......+..+......+|+.|++++|. +..++.. ...++|+.|+++++.--...+..+
T Consensus 154 ~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 232 (455)
T 3v47_A 154 RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF 232 (455)
T ss_dssp TTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCB-CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHH
T ss_pred CcccEEeCCCCcccccChhhhhccccccccccccccCc-ccccchhhccccccccccccceeeeEecCCCcccccchhhh
Confidence 77888888777744444443322333567777777774 3332221 123567777777653322222222
Q ss_pred ccccccccccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEcCCCCccchHHhhc--cCCCCceE
Q 035732 243 GIQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKVESIAERLD--NNTSLEKI 320 (559)
Q Consensus 243 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L 320 (559)
... ...++++.|+++++......+....++.. .+..+. ..++|++|
T Consensus 233 ~~~------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~L~~L 280 (455)
T 3v47_A 233 FDA------IAGTKIQSLILSNSYNMGSSFGHTNFKDP--------------------------DNFTFKGLEASGVKTC 280 (455)
T ss_dssp HHH------TTTCCEEEEECTTCTTTSCCTTCCSSCCC--------------------------CTTTTGGGTTSCCCEE
T ss_pred hcc------ccccceeeEeeccccccccccchhhhccC--------------------------cccccccccccCceEE
Confidence 110 11124677776664222210110000000 000011 12345555
Q ss_pred EeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEeccccccccccccccccCCCcceEEecC-CCC
Q 035732 321 SIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALPKGLHNLTSLQHLTIGG-ALP 399 (559)
Q Consensus 321 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~ 399 (559)
++++|.+....+..+..+++|++|++++|......+..+..+++|+.|++++|......+..+..+++|++|++++ .+.
T Consensus 281 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 360 (455)
T 3v47_A 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360 (455)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCC
T ss_pred EecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCccc
Confidence 5555444444444444555555555555433333333344444555555555543333334445555555555555 443
Q ss_pred CCcC--CCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeec
Q 035732 400 SLEE--DGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRC 446 (559)
Q Consensus 400 ~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~ 446 (559)
.+.+ ...+++|++|++++|. ++.... ..+..+++|+.|++++|
T Consensus 361 ~~~~~~~~~l~~L~~L~L~~N~-l~~~~~---~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 361 ALGDQSFLGLPNLKELALDTNQ-LKSVPD---GIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp EECTTTTTTCTTCCEEECCSSC-CSCCCT---TTTTTCTTCCEEECCSS
T ss_pred ccChhhccccccccEEECCCCc-cccCCH---hHhccCCcccEEEccCC
Confidence 3311 3334555555555554 332211 23455566666666655
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=2.6e-27 Score=256.00 Aligned_cols=264 Identities=15% Similarity=0.192 Sum_probs=120.7
Q ss_pred CceeEEecccCCCCcccCCCCCCCCccceeeccCCC-Ccc-ccCC--------CCCCCCccEEEecccCCCcccCc--cc
Q 035732 126 CRLEYLGLTSCHGLVKLPQSSFSLSSLREIEIYNCS-SLV-SFPE--------VALPSKLKKIRISYCGALKSLPE--AW 193 (559)
Q Consensus 126 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~--------~~~~~~L~~L~l~~~~~~~~~~~--~~ 193 (559)
++|++|++++|.....+|..+.++++|++|++++|. ... .+|. +..+++|++|++++|. +..+|. .+
T Consensus 491 ~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l 569 (876)
T 4ecn_A 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASL 569 (876)
T ss_dssp TTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHH
T ss_pred CCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhh
Confidence 555555555554444445445555555555555543 211 2221 1223355555555554 224443 22
Q ss_pred ccCCCCCccEEecCCCCCccccccccCCCCcceEEeecccCccccchhhccccccccccccCC-ccEEEEecCCCccccc
Q 035732 194 MCDTNSSLEILNIEHCRWLTFIAAVQLPSSLKKLQIRRCDNIRTLTAEEGIQCSSGRRYTSSL-LEELEIWDCPSLTCIF 272 (559)
Q Consensus 194 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~~ 272 (559)
..+++|++|++++|. ++.++....+++|+.|+++++ .+..+|..+... ++ |+.|++++ +.++. +
T Consensus 570 --~~L~~L~~L~Ls~N~-l~~lp~~~~L~~L~~L~Ls~N-~l~~lp~~l~~l---------~~~L~~L~Ls~-N~L~~-l 634 (876)
T 4ecn_A 570 --QKMVKLGLLDCVHNK-VRHLEAFGTNVKLTDLKLDYN-QIEEIPEDFCAF---------TDQVEGLGFSH-NKLKY-I 634 (876)
T ss_dssp --TTCTTCCEEECTTSC-CCBCCCCCTTSEESEEECCSS-CCSCCCTTSCEE---------CTTCCEEECCS-SCCCS-C
T ss_pred --hcCCCCCEEECCCCC-cccchhhcCCCcceEEECcCC-ccccchHHHhhc---------cccCCEEECcC-CCCCc-C
Confidence 233455555555553 234443344445555555542 233333332221 13 55555555 23332 2
Q ss_pred cCCCCCccccccccCCCCCCccEEEEcCCCCccchHH---hhc--cCCCCceEEeeecCccccccccC-CCCCccceeec
Q 035732 273 SKNELPATLESLEVGNLPPSLKSLYVYGCSKVESIAE---RLD--NNTSLEKISIKRCGTLKILPSGL-HNLRQLQEISI 346 (559)
Q Consensus 273 ~~~~~~~~~~~l~~~~l~~~L~~L~l~~~~~~~~~~~---~~~--~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l 346 (559)
| ..+..+ .. .+|+.|++++|.....+|. .+. .+++|+.|++++|.+. .+|..+ ..+++|+.|++
T Consensus 635 p-----~~~~~~---~~-~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~L 704 (876)
T 4ecn_A 635 P-----NIFNAK---SV-YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIIL 704 (876)
T ss_dssp C-----SCCCTT---CS-SCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEEC
T ss_pred c-----hhhhcc---cc-CCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEEC
Confidence 2 111100 00 2356666665554332221 111 2335666666666554 334333 35666666666
Q ss_pred ccccCceecCCCCCC--------CCCccEEeccccccccccccccc--cCCCcceEEecC-CCCCCcC-CCCCCCCceee
Q 035732 347 QICENLVSFPEGGLP--------CAKLTRLEIYDCKRLEALPKGLH--NLTSLQHLTIGG-ALPSLEE-DGLPTNLQLLN 414 (559)
Q Consensus 347 ~~~~~~~~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~-~l~~~~~-~~~~~~L~~L~ 414 (559)
++|.. ..+|..... +++|+.|++++|.. ..+|..+. .+++|+.|++++ .+..+|. ...+++|+.|+
T Consensus 705 s~N~L-~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L-~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~ 782 (876)
T 4ecn_A 705 SNNLM-TSIPENSLKPKDGNYKNTYLLTTIDLRFNKL-TSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFG 782 (876)
T ss_dssp CSCCC-SCCCTTSSSCTTSCCTTGGGCCEEECCSSCC-CCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEE
T ss_pred CCCcC-CccChHHhccccccccccCCccEEECCCCCC-ccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEE
Confidence 66633 345443322 22677777777753 35666655 666666666655 4444432 22344555555
Q ss_pred ecC
Q 035732 415 IEG 417 (559)
Q Consensus 415 l~~ 417 (559)
+++
T Consensus 783 Ls~ 785 (876)
T 4ecn_A 783 IRH 785 (876)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=6.6e-26 Score=232.53 Aligned_cols=347 Identities=17% Similarity=0.207 Sum_probs=184.0
Q ss_pred CCCccEEEeccccCccEEeccCchhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccC
Q 035732 64 IPKLEELEIKNIKNETYIWKSHDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLP 143 (559)
Q Consensus 64 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~ 143 (559)
++++++|++.++ .++. ++ .+..+++|++|++++| .++.+++ +..+ ++|++|++++|.. ..++
T Consensus 45 l~~l~~L~l~~~-~i~~---l~--~~~~l~~L~~L~Ls~n-~l~~~~~------~~~l----~~L~~L~l~~n~l-~~~~ 106 (466)
T 1o6v_A 45 LDQVTTLQADRL-GIKS---ID--GVEYLNNLTQINFSNN-QLTDITP------LKNL----TKLVDILMNNNQI-ADIT 106 (466)
T ss_dssp HHTCCEEECCSS-CCCC---CT--TGGGCTTCCEEECCSS-CCCCCGG------GTTC----TTCCEEECCSSCC-CCCG
T ss_pred hccccEEecCCC-CCcc---Cc--chhhhcCCCEEECCCC-ccCCchh------hhcc----ccCCEEECCCCcc-ccCh
Confidence 445555555554 2222 22 2445555555555554 3444322 3333 5555555555543 3333
Q ss_pred CCCCCCCccceeeccCCCCccccCCCCCCCCccEEEecccCCCcccCcccccCCCCCccEEecCCCCCccccccccCCCC
Q 035732 144 QSSFSLSSLREIEIYNCSSLVSFPEVALPSKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCRWLTFIAAVQLPSS 223 (559)
Q Consensus 144 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 223 (559)
. +..+++|++|++++|. +..++.+..+++|++|++++|. +..++.. ..+++|++|++.++ ....+....+++
T Consensus 107 ~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~~~~---~~l~~L~~L~l~~~--~~~~~~~~~l~~ 178 (466)
T 1o6v_A 107 P-LANLTNLTGLTLFNNQ-ITDIDPLKNLTNLNRLELSSNT-ISDISAL---SGLTSLQQLSFGNQ--VTDLKPLANLTT 178 (466)
T ss_dssp G-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEEEEEEE-ECCCGGG---TTCTTCSEEEEEES--CCCCGGGTTCTT
T ss_pred h-hcCCCCCCEEECCCCC-CCCChHHcCCCCCCEEECCCCc-cCCChhh---ccCCcccEeecCCc--ccCchhhccCCC
Confidence 3 5555555555555542 3333335555555555555554 3323221 33344555544321 222222233333
Q ss_pred cceEEeecccCccccchhhccccccccccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEcCCCC
Q 035732 224 LKKLQIRRCDNIRTLTAEEGIQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSK 303 (559)
Q Consensus 224 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~~~~ 303 (559)
|+.|+++++ .+.. ++ .+ ..+ ++|++|++++|..
T Consensus 179 ---------------------------------L~~L~l~~n-~l~~-~~------~l-----~~l-~~L~~L~l~~n~l 211 (466)
T 1o6v_A 179 ---------------------------------LERLDISSN-KVSD-IS------VL-----AKL-TNLESLIATNNQI 211 (466)
T ss_dssp ---------------------------------CCEEECCSS-CCCC-CG------GG-----GGC-TTCSEEECCSSCC
T ss_pred ---------------------------------CCEEECcCC-cCCC-Ch------hh-----ccC-CCCCEEEecCCcc
Confidence 555555552 2332 11 01 222 4666666666654
Q ss_pred ccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEecccccccccccccc
Q 035732 304 VESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALPKGL 383 (559)
Q Consensus 304 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 383 (559)
....+ ++.+++|++|++++|.+.. + ..+..+++|++|++++|... .++. +..+++|+.|++++|... .++. +
T Consensus 212 ~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n~l~-~~~~-~ 283 (466)
T 1o6v_A 212 SDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQIS-NLAP-LSGLTKLTELKLGANQIS-NISP-L 283 (466)
T ss_dssp CCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCC-CCGG-GTTCTTCSEEECCSSCCC-CCGG-G
T ss_pred ccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccc-cchh-hhcCCCCCEEECCCCccC-cccc-c
Confidence 43332 5556667777776665443 2 24556667777777766432 2222 444557777777776533 3333 6
Q ss_pred ccCCCcceEEecC-CCCCCcCCCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCCCceeeccccccccc
Q 035732 384 HNLTSLQHLTIGG-ALPSLEEDGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGT 462 (559)
Q Consensus 384 ~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 462 (559)
..+++|+.|++++ .+..++....+++|++|++++|. +.+.. .+..+++|+.|++++|. +..++.
T Consensus 284 ~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~-l~~~~-----~~~~l~~L~~L~l~~n~--l~~~~~------- 348 (466)
T 1o6v_A 284 AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN-ISDIS-----PVSSLTKLQRLFFYNNK--VSDVSS------- 348 (466)
T ss_dssp TTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSC-CSCCG-----GGGGCTTCCEEECCSSC--CCCCGG-------
T ss_pred cCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCc-CCCch-----hhccCccCCEeECCCCc--cCCchh-------
Confidence 6677777777777 66666556666777777777776 33322 14567778888877763 333322
Q ss_pred ccccccccceeeccccccccccccccccCCCcCeEEecCCCCCcccCC
Q 035732 463 ALPLLASLTSLGISRFPNLERLSSSIVDLQNLTLLQLWGCPKLKYFPK 510 (559)
Q Consensus 463 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 510 (559)
+..+++|+.|++++|. +..++. +..+++|+.|++++| .++.+|.
T Consensus 349 -l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n-~~~~~p~ 392 (466)
T 1o6v_A 349 -LANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQ-AWTNAPV 392 (466)
T ss_dssp -GTTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECCCE-EEECCCB
T ss_pred -hccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEeccCC-cccCCch
Confidence 5567788888888754 343333 567788888888874 4555444
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=2.9e-26 Score=233.13 Aligned_cols=340 Identities=25% Similarity=0.292 Sum_probs=160.3
Q ss_pred CcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccCCCCCCCCccceeeccCCCCccccCCCCCCCC
Q 035732 95 LKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLPQSSFSLSSLREIEIYNCSSLVSFPEVALPSK 174 (559)
Q Consensus 95 L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 174 (559)
+++|++++| +++.++.. +++|++|++++|.. ..+|.. +++|++|++++|. +..++.+ .++
T Consensus 73 l~~L~l~~~-~l~~lp~~------------~~~L~~L~l~~n~l-~~lp~~---~~~L~~L~l~~n~-l~~l~~~--~~~ 132 (454)
T 1jl5_A 73 AHELELNNL-GLSSLPEL------------PPHLESLVASCNSL-TELPEL---PQSLKSLLVDNNN-LKALSDL--PPL 132 (454)
T ss_dssp CSEEECTTS-CCSCCCSC------------CTTCSEEECCSSCC-SSCCCC---CTTCCEEECCSSC-CSCCCSC--CTT
T ss_pred CCEEEecCC-ccccCCCC------------cCCCCEEEccCCcC-Cccccc---cCCCcEEECCCCc-cCcccCC--CCC
Confidence 466666665 45554431 15666666666644 345543 3566666666652 3333322 146
Q ss_pred ccEEEecccCCCcccCcccccCCCCCccEEecCCCCCccccccccCCCCcceEEeecccCccccchhhcccccccccccc
Q 035732 175 LKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCRWLTFIAAVQLPSSLKKLQIRRCDNIRTLTAEEGIQCSSGRRYTS 254 (559)
Q Consensus 175 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~ 254 (559)
|++|++++|. ++.+|. + ..+++|++|++++|. ++.++. .+++|+.|+++++ .++.++. +.. ++
T Consensus 133 L~~L~L~~n~-l~~lp~-~--~~l~~L~~L~l~~N~-l~~lp~--~~~~L~~L~L~~n-~l~~l~~-~~~-------l~- 195 (454)
T 1jl5_A 133 LEYLGVSNNQ-LEKLPE-L--QNSSFLKIIDVDNNS-LKKLPD--LPPSLEFIAAGNN-QLEELPE-LQN-------LP- 195 (454)
T ss_dssp CCEEECCSSC-CSSCCC-C--TTCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSS-CCSSCCC-CTT-------CT-
T ss_pred CCEEECcCCC-CCCCcc-c--CCCCCCCEEECCCCc-CcccCC--CcccccEEECcCC-cCCcCcc-ccC-------CC-
Confidence 6666666665 344552 1 445666666666663 333332 2346666666663 3444432 111 22
Q ss_pred CCccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEcCCCCccchHHhhccCCCCceEEeeecCcccccccc
Q 035732 255 SLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSG 334 (559)
Q Consensus 255 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 334 (559)
+|++|++++ +.++. ++ ..+.+|++|++++|... .+| .+..+++|++|++++|.+.. +|..
T Consensus 196 -~L~~L~l~~-N~l~~-l~--------------~~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~ 255 (454)
T 1jl5_A 196 -FLTAIYADN-NSLKK-LP--------------DLPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL 255 (454)
T ss_dssp -TCCEEECCS-SCCSS-CC--------------CCCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC
T ss_pred -CCCEEECCC-CcCCc-CC--------------CCcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc
Confidence 366666666 33332 11 11246677777666533 444 36666777777777665443 3322
Q ss_pred CCCCCccceeecccccCceecCCCCCCCCCccEEeccccccccccccccccCCCcceEEecC-CCCCCcCCCCCCCCcee
Q 035732 335 LHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEEDGLPTNLQLL 413 (559)
Q Consensus 335 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L 413 (559)
+++|++|++++|. +..+|.. +++|+.|++++|.. ..+|.. .++|+.|++++ .+..++. .+++|++|
T Consensus 256 ---~~~L~~L~l~~N~-l~~l~~~---~~~L~~L~ls~N~l-~~l~~~---~~~L~~L~l~~N~l~~i~~--~~~~L~~L 322 (454)
T 1jl5_A 256 ---PPSLEALNVRDNY-LTDLPEL---PQSLTFLDVSENIF-SGLSEL---PPNLYYLNASSNEIRSLCD--LPPSLEEL 322 (454)
T ss_dssp ---CTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCC-SEESCC---CTTCCEEECCSSCCSEECC--CCTTCCEE
T ss_pred ---ccccCEEECCCCc-ccccCcc---cCcCCEEECcCCcc-CcccCc---CCcCCEEECcCCcCCcccC--CcCcCCEE
Confidence 3567777777664 2334432 24677777776653 222221 24667777766 5554432 23467777
Q ss_pred eecCccchhhhhhhcccccccCccccEEEEeecCCCceeecccccccccccccccccceeecccccccc--ccccccccC
Q 035732 414 NIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLE--RLSSSIVDL 491 (559)
Q Consensus 414 ~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~--~~~~~~~~~ 491 (559)
++++|. +.. ++. .+++|+.|++++|. +..++. .+++|+.|++++|.... .+|.++..+
T Consensus 323 ~Ls~N~-l~~-lp~------~~~~L~~L~L~~N~--l~~lp~----------~l~~L~~L~L~~N~l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 323 NVSNNK-LIE-LPA------LPPRLERLIASFNH--LAEVPE----------LPQNLKQLHVEYNPLREFPDIPESVEDL 382 (454)
T ss_dssp ECCSSC-CSC-CCC------CCTTCCEEECCSSC--CSCCCC----------CCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred ECCCCc-ccc-ccc------cCCcCCEEECCCCc--cccccc----------hhhhccEEECCCCCCCcCCCChHHHHhh
Confidence 777766 332 111 24667777777663 233333 23667777777744333 345444444
Q ss_pred -------------CCcCeEEecCCCCCcccCCCCCCCCceEEEecCChh
Q 035732 492 -------------QNLTLLQLWGCPKLKYFPKKGLPSSLLELDIVGCPL 527 (559)
Q Consensus 492 -------------~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~ 527 (559)
++|+.|++++ +.++.++. +|++++.|.+.+|..
T Consensus 383 ~~n~~~~~i~~~~~~L~~L~ls~-N~l~~~~~--iP~sl~~L~~~~~~~ 428 (454)
T 1jl5_A 383 RMNSHLAEVPELPQNLKQLHVET-NPLREFPD--IPESVEDLRMNSERV 428 (454)
T ss_dssp ECCC---------------------------------------------
T ss_pred hhcccccccccccCcCCEEECCC-CcCCcccc--chhhHhheeCcCccc
Confidence 7889999998 56766554 567888888887753
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=8.9e-26 Score=231.34 Aligned_cols=368 Identities=15% Similarity=0.147 Sum_probs=229.5
Q ss_pred CCCccEEEeccccCccEEeccCchhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccC
Q 035732 64 IPKLEELEIKNIKNETYIWKSHDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLP 143 (559)
Q Consensus 64 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~ 143 (559)
.++|++|+++++ .++. +.+..++.+++|++|+++++.....+++. .+..+ ++|++|++++|......|
T Consensus 29 ~~~l~~L~Ls~n-~i~~---~~~~~~~~l~~L~~L~L~~n~~~~~i~~~----~~~~l----~~L~~L~Ls~n~l~~~~~ 96 (455)
T 3v47_A 29 PAHVNYVDLSLN-SIAE---LNETSFSRLQDLQFLKVEQQTPGLVIRNN----TFRGL----SSLIILKLDYNQFLQLET 96 (455)
T ss_dssp CTTCCEEECCSS-CCCE---ECTTTTSSCTTCCEEECCCCSTTCEECTT----TTTTC----TTCCEEECTTCTTCEECT
T ss_pred CCccCEEEecCC-ccCc---CChhHhccCccccEEECcCCcccceECcc----ccccc----ccCCEEeCCCCccCccCh
Confidence 478999999988 5655 66677889999999999997443355443 35556 999999999997755568
Q ss_pred CCCCCCCccceeeccCCCCccccC-C--CCCCCCccEEEecccCCCcccCcccccCCCCCccEEecCCCCCccccccccC
Q 035732 144 QSSFSLSSLREIEIYNCSSLVSFP-E--VALPSKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCRWLTFIAAVQL 220 (559)
Q Consensus 144 ~~~~~l~~L~~L~l~~~~~~~~~~-~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 220 (559)
..+..+++|++|++++|......+ . +..+++|++|++++|......|..++ ..+++|++|++++|. ++.......
T Consensus 97 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~l 174 (455)
T 3v47_A 97 GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF-LNMRRFHVLDLTFNK-VKSICEEDL 174 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGG-GGCTTCCEEECTTCC-BSCCCTTTS
T ss_pred hhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCccccc-CCCCcccEEeCCCCc-ccccChhhh
Confidence 889999999999999986544333 2 77788999999999884444344322 455888888888885 332211100
Q ss_pred CCCcceEEeecccCccccchhhccccccccccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEcC
Q 035732 221 PSSLKKLQIRRCDNIRTLTAEEGIQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYG 300 (559)
Q Consensus 221 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~ 300 (559)
.. +....++.|++.+ +.+.. ++...+..... -.+... ++|++|++++
T Consensus 175 ----------------------~~-------l~~~~L~~L~l~~-n~l~~-~~~~~~~~~~~-~~~~~~-~~L~~L~Ls~ 221 (455)
T 3v47_A 175 ----------------------LN-------FQGKHFTLLRLSS-ITLQD-MNEYWLGWEKC-GNPFKN-TSITTLDLSG 221 (455)
T ss_dssp ----------------------GG-------GTTCEEEEEECTT-CBCTT-CSTTCTTHHHH-CCTTTT-CEEEEEECTT
T ss_pred ----------------------hc-------ccccccccccccc-Ccccc-cchhhcccccc-cccccc-ceeeeEecCC
Confidence 00 0001255555555 22332 11110000000 000122 4788888888
Q ss_pred CCCccchHHhhccC---CCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEecccccccc
Q 035732 301 CSKVESIAERLDNN---TSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLE 377 (559)
Q Consensus 301 ~~~~~~~~~~~~~l---~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 377 (559)
|......+..+... .+|+.|++++|....... ....++.+....+. ....++|+.|++++|....
T Consensus 222 n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~~-----------~~~~~~L~~L~l~~n~l~~ 289 (455)
T 3v47_A 222 NGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF-GHTNFKDPDNFTFK-----------GLEASGVKTCDLSKSKIFA 289 (455)
T ss_dssp SCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT-TCCSSCCCCTTTTG-----------GGTTSCCCEEECCSSCCCE
T ss_pred CcccccchhhhhccccccceeeEeecccccccccc-chhhhccCcccccc-----------cccccCceEEEecCccccc
Confidence 87766666655443 788888888775443211 01111111111000 1112467777777776655
Q ss_pred ccccccccCCCcceEEecC-CCCCCcC--CCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCCCceeec
Q 035732 378 ALPKGLHNLTSLQHLTIGG-ALPSLEE--DGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFP 454 (559)
Q Consensus 378 ~~~~~l~~l~~L~~L~l~~-~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 454 (559)
..|..+..+++|++|++++ .+..++. +..+++|++|++++|. +....+ ..+..+++|++|++++|. +..+.
T Consensus 290 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~---~~~~~l~~L~~L~Ls~N~--l~~~~ 363 (455)
T 3v47_A 290 LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSIDS---RMFENLDKLEVLDLSYNH--IRALG 363 (455)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECG---GGGTTCTTCCEEECCSSC--CCEEC
T ss_pred cchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc-cCCcCh---hHhcCcccCCEEECCCCc--ccccC
Confidence 5666677777777777777 5555432 4456788888888886 443333 257788888888888874 44443
Q ss_pred ccccccccccccccccceeeccccccccccccc-cccCCCcCeEEecCCC
Q 035732 455 LENKRLGTALPLLASLTSLGISRFPNLERLSSS-IVDLQNLTLLQLWGCP 503 (559)
Q Consensus 455 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~ 503 (559)
.. .+..+++|+.|++++ +.++.++.. +..+++|++|++++|+
T Consensus 364 ~~------~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 364 DQ------SFLGLPNLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp TT------TTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hh------hccccccccEEECCC-CccccCCHhHhccCCcccEEEccCCC
Confidence 33 266788899999998 456666653 4678899999999854
No 27
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=8.8e-25 Score=233.81 Aligned_cols=455 Identities=17% Similarity=0.162 Sum_probs=274.4
Q ss_pred CCCCCC-CccEEEeccccCccEEeccCchhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCC
Q 035732 60 LKPRIP-KLEELEIKNIKNETYIWKSHDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHG 138 (559)
Q Consensus 60 ~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~ 138 (559)
+|..+| ++++|+++++ .++. +++..|..+++|++|+|++| .++.++++ .+..+ ++|++|+|++|..
T Consensus 46 vP~~lp~~~~~LdLs~N-~i~~---l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~----~f~~L----~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 46 IPDNLPFSTKNLDLSFN-PLRH---LGSYSFFSFPELQVLDLSRC-EIQTIEDG----AYQSL----SHLSTLILTGNPI 112 (635)
T ss_dssp CCSSSCTTCCEEECTTS-CCCE---ECTTTTTTCTTCCEEECTTC-CCCEECTT----TTTTC----TTCCEEECTTCCC
T ss_pred cCCCCCcCCCEEEeeCC-CCCC---CCHHHHhCCCCCCEEECCCC-cCCCcChh----HhcCC----CCCCEEEccCCcC
Confidence 455665 7999999998 6776 88888999999999999997 78988875 45666 9999999999975
Q ss_pred CcccC-CCCCCCCccceeeccCCCCccccC--CCCCCCCccEEEecccCCCccc--CcccccCCCCCccEEecCCCCCcc
Q 035732 139 LVKLP-QSSFSLSSLREIEIYNCSSLVSFP--EVALPSKLKKIRISYCGALKSL--PEAWMCDTNSSLEILNIEHCRWLT 213 (559)
Q Consensus 139 l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~ 213 (559)
..+| ..|.++++|++|++++|. +..++ .++.+++|++|++++|. +..+ |..+ ..+++|++|++++|. ++
T Consensus 113 -~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~--~~l~~L~~L~L~~N~-l~ 186 (635)
T 4g8a_A 113 -QSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYF--SNLTNLEHLDLSSNK-IQ 186 (635)
T ss_dssp -CEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGG--GGCTTCCEEECCSSC-CC
T ss_pred -CCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCc-cccCCCchhh--ccchhhhhhcccCcc-cc
Confidence 6665 568999999999999985 45555 37889999999999998 4433 3332 446889999999985 44
Q ss_pred ccccc--c----CCCCcceEEeecccCccccchhhcccc------------------ccccccccCCccEEE--EecCCC
Q 035732 214 FIAAV--Q----LPSSLKKLQIRRCDNIRTLTAEEGIQC------------------SSGRRYTSSLLEELE--IWDCPS 267 (559)
Q Consensus 214 ~~~~~--~----~~~~L~~L~l~~~~~l~~~~~~~~~~~------------------~~~~~~~~~~L~~L~--l~~~~~ 267 (559)
.+... . .......++++. ..++.++....... .....+.. ++... +.....
T Consensus 187 ~~~~~~l~~L~~l~~~~~~~~ls~-n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~--l~~~~l~~~~~~~ 263 (635)
T 4g8a_A 187 SIYCTDLRVLHQMPLLNLSLDLSL-NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAG--LEVHRLVLGEFRN 263 (635)
T ss_dssp EECGGGGHHHHTCTTCCCEEECTT-CCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTT--CEEEEEEEECCTT
T ss_pred ccccccccchhhhhhhhhhhhccc-CcccccCcccccchhhhhhhhhcccccccccchhhcCCcc--ccccccccccccc
Confidence 33221 1 111222333332 22222211111000 00000111 22221 111110
Q ss_pred cccc--ccCCCCCccccccc------------------cCCCCCCccEEEEcCCCCccchHHhhccCCCCceEEeeecCc
Q 035732 268 LTCI--FSKNELPATLESLE------------------VGNLPPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGT 327 (559)
Q Consensus 268 l~~~--~~~~~~~~~~~~l~------------------~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 327 (559)
...+ .....+. ....+. ......+++.+.+.++...... .+.....|+.|++.+|.+
T Consensus 264 ~~~l~~~~~~~~~-~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~ 340 (635)
T 4g8a_A 264 EGNLEKFDKSALE-GLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKF 340 (635)
T ss_dssp SCCCSCCCTTTTG-GGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEE
T ss_pred ccccccccccccc-cccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccc
Confidence 0000 0000000 000000 0011135556665554322211 233445555555555433
Q ss_pred cccc-------------------cccCCCCCccceeecccccCce--ecCCCCCCCCCccEEeccccccccccccccccC
Q 035732 328 LKIL-------------------PSGLHNLRQLQEISIQICENLV--SFPEGGLPCAKLTRLEIYDCKRLEALPKGLHNL 386 (559)
Q Consensus 328 ~~~~-------------------~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 386 (559)
.... +.....+++|+.+++++|.... ..+.......+|+.+++..+.. ...+..+..+
T Consensus 341 ~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~-~~~~~~~~~l 419 (635)
T 4g8a_A 341 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGV-ITMSSNFLGL 419 (635)
T ss_dssp SSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSE-EEECSCCTTC
T ss_pred cCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccc-cccccccccc
Confidence 2211 1223356677777777664422 1222233445777777777653 3345567788
Q ss_pred CCcceEEecC-CC---CCCcCCCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCCCceeeccccccccc
Q 035732 387 TSLQHLTIGG-AL---PSLEEDGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGT 462 (559)
Q Consensus 387 ~~L~~L~l~~-~l---~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 462 (559)
++|+.+++.+ .. ........+++++.++++.|. +....+ ..+..+++|+.|++++|.......+.
T Consensus 420 ~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~-l~~~~~---~~~~~~~~L~~L~Ls~N~~~~~~~~~------- 488 (635)
T 4g8a_A 420 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFN---GIFNGLSSLEVLKMAGNSFQENFLPD------- 488 (635)
T ss_dssp TTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSC-CEECCT---TTTTTCTTCCEEECTTCEEGGGEECS-------
T ss_pred ccccchhhhhccccccccccccccccccccccccccc-cccccc---cccccchhhhhhhhhhcccccccCch-------
Confidence 8899998887 22 222334567889999999887 443333 36788899999999987422222222
Q ss_pred ccccccccceeecccccccccc-ccccccCCCcCeEEecCCCCCcccCCCCC--CCCceEEEecCChhhhhhhhccCccc
Q 035732 463 ALPLLASLTSLGISRFPNLERL-SSSIVDLQNLTLLQLWGCPKLKYFPKKGL--PSSLLELDIVGCPLIEEKCRKDGGQY 539 (559)
Q Consensus 463 ~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~~~~~~~~~~ 539 (559)
.+..+++|+.|++++| .++.+ |..+.++++|++|++++ |+++.++...+ +++|++|++++|.... + ..+.
T Consensus 489 ~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-~----~~~~ 561 (635)
T 4g8a_A 489 IFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLNHIMT-S----KKQE 561 (635)
T ss_dssp CCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTTSCCCB-C----CSSC
T ss_pred hhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCCCcCCC-C----CHHH
Confidence 3778899999999996 45655 56788999999999999 68999887433 5799999999985321 1 1123
Q ss_pred cccc-CCCceeEEeceEecC
Q 035732 540 WDLL-THIPYVLIAGKFVFG 558 (559)
Q Consensus 540 ~~~~-~~~~~~~~~~~~~~~ 558 (559)
+..+ ..+..+++.++++--
T Consensus 562 l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 562 LQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TTCCCTTCCEEECTTCCBCC
T ss_pred HHhhhCcCCEEEeeCCCCcc
Confidence 3333 567778887776644
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=3.2e-25 Score=227.46 Aligned_cols=341 Identities=17% Similarity=0.211 Sum_probs=200.9
Q ss_pred CccCccEEeecCCCceEeeccCCccCcccceeeecCCcceeecCCCCCCCCCccEEEeccccCccEEeccCchhhhccCC
Q 035732 15 SLPAFCKLEIDGCKKVLWRSATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHDELLQDICS 94 (559)
Q Consensus 15 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 94 (559)
.+++++.|+++++....++.. ..+++|++|+++++ .++. +++ +..+++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~~--------------------------~~l~~L~~L~Ls~n-~l~~---~~~--~~~l~~ 91 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDGV--------------------------EYLNNLTQINFSNN-QLTD---ITP--LKNLTK 91 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTTG--------------------------GGCTTCCEEECCSS-CCCC---CGG--GTTCTT
T ss_pred HhccccEEecCCCCCccCcch--------------------------hhhcCCCEEECCCC-ccCC---chh--hhcccc
Confidence 478899999988865443321 14899999999998 4555 444 789999
Q ss_pred CcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccCCCCCCCCccceeeccCCCCccccCCCCCCCC
Q 035732 95 LKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLPQSSFSLSSLREIEIYNCSSLVSFPEVALPSK 174 (559)
Q Consensus 95 L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 174 (559)
|++|++++| .+..+++ +..+ ++|++|++++|.. ..++. +..+++|++|++++|. +..++.+..+++
T Consensus 92 L~~L~l~~n-~l~~~~~------~~~l----~~L~~L~L~~n~l-~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~ 157 (466)
T 1o6v_A 92 LVDILMNNN-QIADITP------LANL----TNLTGLTLFNNQI-TDIDP-LKNLTNLNRLELSSNT-ISDISALSGLTS 157 (466)
T ss_dssp CCEEECCSS-CCCCCGG------GTTC----TTCCEEECCSSCC-CCCGG-GTTCTTCSEEEEEEEE-ECCCGGGTTCTT
T ss_pred CCEEECCCC-ccccChh------hcCC----CCCCEEECCCCCC-CCChH-HcCCCCCCEEECCCCc-cCCChhhccCCc
Confidence 999999997 6666543 5556 9999999999865 56654 8899999999999984 555677889999
Q ss_pred ccEEEecccCCCcccCcccccCCCCCccEEecCCCCCccccccccCCCCcceEEeecccCccccchhhcccccccccccc
Q 035732 175 LKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCRWLTFIAAVQLPSSLKKLQIRRCDNIRTLTAEEGIQCSSGRRYTS 254 (559)
Q Consensus 175 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~ 254 (559)
|++|++++ . +...+.. ..+++|++|++++|. ++.++....+++|+.|+++++. +...+.... +
T Consensus 158 L~~L~l~~-~-~~~~~~~---~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~--------l-- 220 (466)
T 1o6v_A 158 LQQLSFGN-Q-VTDLKPL---ANLTTLERLDISSNK-VSDISVLAKLTNLESLIATNNQ-ISDITPLGI--------L-- 220 (466)
T ss_dssp CSEEEEEE-S-CCCCGGG---TTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSC-CCCCGGGGG--------C--
T ss_pred ccEeecCC-c-ccCchhh---ccCCCCCEEECcCCc-CCCChhhccCCCCCEEEecCCc-ccccccccc--------c--
Confidence 99999974 3 3333332 566899999999985 5555545556677777777643 322222100 1
Q ss_pred CCccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEcCCCCccchHHhhccCCCCceEEeeecCcccccccc
Q 035732 255 SLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSG 334 (559)
Q Consensus 255 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 334 (559)
++|++|++++ +.++. + ..+..+++|++|++++|.+....+
T Consensus 221 ~~L~~L~l~~-n~l~~------------------------------------~-~~l~~l~~L~~L~l~~n~l~~~~~-- 260 (466)
T 1o6v_A 221 TNLDELSLNG-NQLKD------------------------------------I-GTLASLTNLTDLDLANNQISNLAP-- 260 (466)
T ss_dssp TTCCEEECCS-SCCCC------------------------------------C-GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred CCCCEEECCC-CCccc------------------------------------c-hhhhcCCCCCEEECCCCccccchh--
Confidence 1255555555 22322 1 123444444444444444333211
Q ss_pred CCCCCccceeecccccCceecCCCCCCCCCccEEeccccccccccccccccCCCcceEEecC-CCCCCcCCCCCCCCcee
Q 035732 335 LHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEEDGLPTNLQLL 413 (559)
Q Consensus 335 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L 413 (559)
+..+++|++|++++|.. ..++. +..+++|+.|++++|... .++. +..+++|+.|++++ .+..++....+++|++|
T Consensus 261 ~~~l~~L~~L~l~~n~l-~~~~~-~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L 336 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQI-SNISP-LAGLTALTNLELNENQLE-DISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 336 (466)
T ss_dssp GTTCTTCSEEECCSSCC-CCCGG-GTTCTTCSEEECCSSCCS-CCGG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEE
T ss_pred hhcCCCCCEEECCCCcc-Ccccc-ccCCCccCeEEcCCCccc-Cchh-hcCCCCCCEEECcCCcCCCchhhccCccCCEe
Confidence 44445555555554422 22222 333445555555554322 2222 44555555555555 44444444445555666
Q ss_pred eecCccchhhhhhhcccccccCccccEEEEeecCCCceeecccccccccccccccccceeecccc
Q 035732 414 NIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRF 478 (559)
Q Consensus 414 ~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 478 (559)
++++|. +.+. ..+..+++|+.|++++|. +..+.. +..+++|+.|++++|
T Consensus 337 ~l~~n~-l~~~-----~~l~~l~~L~~L~l~~n~--l~~~~~--------~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 337 FFYNNK-VSDV-----SSLANLTNINWLSAGHNQ--ISDLTP--------LANLTRITQLGLNDQ 385 (466)
T ss_dssp ECCSSC-CCCC-----GGGTTCTTCCEEECCSSC--CCBCGG--------GTTCTTCCEEECCCE
T ss_pred ECCCCc-cCCc-----hhhccCCCCCEEeCCCCc--cCccch--------hhcCCCCCEEeccCC
Confidence 665554 3322 134555666666666553 222221 334556666666663
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=4.9e-25 Score=231.73 Aligned_cols=433 Identities=15% Similarity=0.095 Sum_probs=283.5
Q ss_pred CCCccEEEeccccCccEEeccCchhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccC
Q 035732 64 IPKLEELEIKNIKNETYIWKSHDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLP 143 (559)
Q Consensus 64 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~ 143 (559)
....++++++++ +++. +|... .++|++|+++++ .++.+++. .+..+ ++|++|++++|......|
T Consensus 30 ~~~~~~l~ls~~-~L~~---ip~~~---~~~L~~L~Ls~N-~i~~~~~~----~~~~l----~~L~~L~Ls~N~l~~~~~ 93 (562)
T 3a79_B 30 NELESMVDYSNR-NLTH---VPKDL---PPRTKALSLSQN-SISELRMP----DISFL----SELRVLRLSHNRIRSLDF 93 (562)
T ss_dssp ---CCEEECTTS-CCCS---CCTTS---CTTCCEEECCSS-CCCCCCGG----GTTTC----TTCCEEECCSCCCCEECT
T ss_pred cCCCcEEEcCCC-CCcc---CCCCC---CCCcCEEECCCC-CccccChh----hhccC----CCccEEECCCCCCCcCCH
Confidence 344578888877 5655 66533 389999999996 68877764 45666 999999999997644457
Q ss_pred CCCCCCCccceeeccCCCCccccCCCCCCCCccEEEecccCCCcccC--cccccCCCCCccEEecCCCCCccccccccCC
Q 035732 144 QSSFSLSSLREIEIYNCSSLVSFPEVALPSKLKKIRISYCGALKSLP--EAWMCDTNSSLEILNIEHCRWLTFIAAVQLP 221 (559)
Q Consensus 144 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 221 (559)
..+..+++|++|++++|. +..+|.. .+++|++|++++|. +..++ ..+ ..+++|++|++++|. ++.. ....+
T Consensus 94 ~~~~~l~~L~~L~Ls~N~-l~~lp~~-~l~~L~~L~Ls~N~-l~~l~~p~~~--~~l~~L~~L~L~~n~-l~~~-~~~~l 166 (562)
T 3a79_B 94 HVFLFNQDLEYLDVSHNR-LQNISCC-PMASLRHLDLSFND-FDVLPVCKEF--GNLTKLTFLGLSAAK-FRQL-DLLPV 166 (562)
T ss_dssp TTTTTCTTCCEEECTTSC-CCEECSC-CCTTCSEEECCSSC-CSBCCCCGGG--GGCTTCCEEEEECSB-CCTT-TTGGG
T ss_pred HHhCCCCCCCEEECCCCc-CCccCcc-ccccCCEEECCCCC-ccccCchHhh--cccCcccEEecCCCc-cccC-chhhh
Confidence 778999999999999985 4567765 78999999999988 55444 333 456889999999885 3331 22334
Q ss_pred CCc--ceEEeecccC--ccccchhhccccccccccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEE
Q 035732 222 SSL--KKLQIRRCDN--IRTLTAEEGIQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLY 297 (559)
Q Consensus 222 ~~L--~~L~l~~~~~--l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~ 297 (559)
++| +.|+++++.. -...+..+.. +.. ..-.+++.+ +.+.. .+.......+ ++|+.++
T Consensus 167 ~~L~L~~L~L~~n~l~~~~~~~~~l~~-------l~~-~~l~l~l~~-n~~~~---------~~~~~~~~~l-~~L~~L~ 227 (562)
T 3a79_B 167 AHLHLSCILLDLVSYHIKGGETESLQI-------PNT-TVLHLVFHP-NSLFS---------VQVNMSVNAL-GHLQLSN 227 (562)
T ss_dssp TTSCEEEEEEEESSCCCCSSSCCEEEE-------CCE-EEEEEEECS-SSCCC---------CCCEEEESSE-EEEEEEE
T ss_pred hhceeeEEEeecccccccccCcccccc-------cCc-ceEEEEecC-ccchh---------hhhhhccccc-ceEEEec
Confidence 455 8998888543 1222222221 000 011334443 22221 1111111233 5799999
Q ss_pred EcCCCC----ccchHHhhccCCCCceEEeeecCcccc----ccccCCCCCccceeecccccCceecCCCC-----CCC--
Q 035732 298 VYGCSK----VESIAERLDNNTSLEKISIKRCGTLKI----LPSGLHNLRQLQEISIQICENLVSFPEGG-----LPC-- 362 (559)
Q Consensus 298 l~~~~~----~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----~~~-- 362 (559)
++++.. .......+..+++|+.+++.++..... ++..+ ..++|++|++++|.....+|... ..+
T Consensus 228 l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~ 306 (562)
T 3a79_B 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKS 306 (562)
T ss_dssp EECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCE
T ss_pred ccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchh
Confidence 998742 223345678889999999998875542 22222 34589999999986554666544 111
Q ss_pred ------------------------CCccEEeccccccccccccccccCCCcceEEecC-CCCC-Cc-CCCCCCCCceeee
Q 035732 363 ------------------------AKLTRLEIYDCKRLEALPKGLHNLTSLQHLTIGG-ALPS-LE-EDGLPTNLQLLNI 415 (559)
Q Consensus 363 ------------------------~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~-~~-~~~~~~~L~~L~l 415 (559)
.+|+.|++++|.... .+ ....+++|++|++++ .+.. ++ ....+++|++|++
T Consensus 307 L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~-~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 384 (562)
T 3a79_B 307 LMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIH-MV-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLIL 384 (562)
T ss_dssp EEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCC-CC-CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEEC
T ss_pred eehhhcccceeecChhhhhhhhccCcceEEEccCCCccc-cc-CccCCCCceEEECCCCccccchhhhhcccCCCCEEEC
Confidence 235666666654321 11 126788999999998 6665 22 3567889999999
Q ss_pred cCccchhhhhhhcccccccCccccEEEEeecCCCcee-ecccccccccccccccccceeeccccccccccccccccCCCc
Q 035732 416 EGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVS-FPLENKRLGTALPLLASLTSLGISRFPNLERLSSSIVDLQNL 494 (559)
Q Consensus 416 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L 494 (559)
++|. ++.... .+..+..+++|+.|++++|. +.. ++... +..+++|+.|++++|.....++..+. ++|
T Consensus 385 ~~N~-l~~~~~-~~~~~~~l~~L~~L~l~~N~--l~~~~~~~~------~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L 452 (562)
T 3a79_B 385 QRNG-LKNFFK-VALMTKNMSSLETLDVSLNS--LNSHAYDRT------CAWAESILVLNLSSNMLTGSVFRCLP--PKV 452 (562)
T ss_dssp CSSC-CCBTTH-HHHTTTTCTTCCEEECTTSC--CBSCCSSCC------CCCCTTCCEEECCSSCCCGGGGSSCC--TTC
T ss_pred CCCC-cCCccc-chhhhcCCCCCCEEECCCCc--CCCccChhh------hcCcccCCEEECCCCCCCcchhhhhc--CcC
Confidence 9998 543211 11357889999999999884 333 55433 67789999999999764445554322 699
Q ss_pred CeEEecCCCCCcccCCCC-CCCCceEEEecCChhhhhhhhccCcccccccCCCceeEEeceEecCC
Q 035732 495 TLLQLWGCPKLKYFPKKG-LPSSLLELDIVGCPLIEEKCRKDGGQYWDLLTHIPYVLIAGKFVFGD 559 (559)
Q Consensus 495 ~~L~l~~c~~l~~l~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (559)
++|++++ ++++.+|... ..++|++|++++|.. +.+ . ...+..+.++..+++.++.+.+|
T Consensus 453 ~~L~L~~-N~l~~ip~~~~~l~~L~~L~L~~N~l-~~l-~---~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 453 KVLDLHN-NRIMSIPKDVTHLQALQELNVASNQL-KSV-P---DGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp SEEECCS-SCCCCCCTTTTSSCCCSEEECCSSCC-CCC-C---TTSTTTCTTCCCEECCSCCBCCC
T ss_pred CEEECCC-CcCcccChhhcCCCCCCEEECCCCCC-CCC-C---HHHHhcCCCCCEEEecCCCcCCC
Confidence 9999999 5899998843 368999999999853 222 1 11366677888888988877665
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=1.7e-24 Score=216.90 Aligned_cols=307 Identities=17% Similarity=0.172 Sum_probs=240.2
Q ss_pred CCCCccEEEeccccCccEEeccCchhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCccc
Q 035732 63 RIPKLEELEIKNIKNETYIWKSHDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKL 142 (559)
Q Consensus 63 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~ 142 (559)
.+++++.|++.++ .++. ++...+..+++|++|+++++ .++.++.. .+..+ ++|++|++++|......
T Consensus 43 ~l~~l~~l~l~~~-~l~~---l~~~~~~~l~~L~~L~L~~n-~i~~~~~~----~~~~l----~~L~~L~L~~n~l~~~~ 109 (390)
T 3o6n_A 43 TLNNQKIVTFKNS-TMRK---LPAALLDSFRQVELLNLNDL-QIEEIDTY----AFAYA----HTIQKLYMGFNAIRYLP 109 (390)
T ss_dssp GGCCCSEEEEESC-EESE---ECTHHHHHCCCCSEEECTTS-CCCEECTT----TTTTC----TTCCEEECCSSCCCCCC
T ss_pred ccCCceEEEecCC-chhh---CChhHhcccccCcEEECCCC-cccccChh----hccCC----CCcCEEECCCCCCCcCC
Confidence 4689999999987 4655 88888899999999999996 68877764 35566 99999999999764445
Q ss_pred CCCCCCCCccceeeccCCCCccccCC--CCCCCCccEEEecccCCCcccCcccccCCCCCccEEecCCCCCccccccccC
Q 035732 143 PQSSFSLSSLREIEIYNCSSLVSFPE--VALPSKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCRWLTFIAAVQL 220 (559)
Q Consensus 143 ~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 220 (559)
|..+..+++|++|++++|. +..+|. +..+++|++|++++|. +..++...+ ..+++|++|++++|. ++.++ ...
T Consensus 110 ~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~-~~~ 184 (390)
T 3o6n_A 110 PHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTF-QATTSLQNLQLSSNR-LTHVD-LSL 184 (390)
T ss_dssp TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTT-SSCTTCCEEECCSSC-CSBCC-GGG
T ss_pred HHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCc-cCccChhhc-cCCCCCCEEECCCCc-CCccc-ccc
Confidence 6678999999999999984 456664 5789999999999998 444444322 456899999999985 44442 355
Q ss_pred CCCcceEEeecccCccccchhhccccccccccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEcC
Q 035732 221 PSSLKKLQIRRCDNIRTLTAEEGIQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYG 300 (559)
Q Consensus 221 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~ 300 (559)
+++|+.++++++ .+..++.. +.+++|++++ +.+.. ++. ..+++|+.|++++
T Consensus 185 l~~L~~L~l~~n-~l~~~~~~-------------~~L~~L~l~~-n~l~~-~~~-------------~~~~~L~~L~l~~ 235 (390)
T 3o6n_A 185 IPSLFHANVSYN-LLSTLAIP-------------IAVEELDASH-NSINV-VRG-------------PVNVELTILKLQH 235 (390)
T ss_dssp CTTCSEEECCSS-CCSEEECC-------------SSCSEEECCS-SCCCE-EEC-------------CCCSSCCEEECCS
T ss_pred ccccceeecccc-cccccCCC-------------CcceEEECCC-Ceeee-ccc-------------cccccccEEECCC
Confidence 789999999874 44443321 2399999998 56665 332 2236899999999
Q ss_pred CCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEeccccccccccc
Q 035732 301 CSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALP 380 (559)
Q Consensus 301 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 380 (559)
|..... ..+..+++|++|++++|.+....+..+..+++|++|++++|. ++.++.....+++|+.|++++|. +..+|
T Consensus 236 n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n~-l~~~~ 311 (390)
T 3o6n_A 236 NNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNH-LLHVE 311 (390)
T ss_dssp SCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCSSC-CCCCG
T ss_pred CCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcccCCCCCCCEEECCCCc-ceecC
Confidence 876543 478899999999999998877778889999999999999984 45667666778899999999996 45777
Q ss_pred cccccCCCcceEEecC-CCCCCcCCCCCCCCceeeecCccch
Q 035732 381 KGLHNLTSLQHLTIGG-ALPSLEEDGLPTNLQLLNIEGNMEI 421 (559)
Q Consensus 381 ~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~l 421 (559)
..+..+++|+.|++++ .+..++ ...+++|++|++++|+..
T Consensus 312 ~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 312 RNQPQFDRLENLYLDHNSIVTLK-LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp GGHHHHTTCSEEECCSSCCCCCC-CCTTCCCSEEECCSSCEE
T ss_pred ccccccCcCCEEECCCCccceeC-chhhccCCEEEcCCCCcc
Confidence 7888899999999998 777775 566789999999998833
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=1.8e-24 Score=213.26 Aligned_cols=303 Identities=18% Similarity=0.220 Sum_probs=147.4
Q ss_pred hccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccCCCCCCCCccceeeccCCCCccccCCC
Q 035732 90 QDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLPQSSFSLSSLREIEIYNCSSLVSFPEV 169 (559)
Q Consensus 90 ~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 169 (559)
..+++|++|+++++ .+..++. +..+ ++|++|++++|.. ..++. +..+++|++|++++| .+..++.+
T Consensus 41 ~~l~~L~~L~l~~~-~i~~~~~------~~~~----~~L~~L~l~~n~i-~~~~~-~~~l~~L~~L~L~~n-~i~~~~~~ 106 (347)
T 4fmz_A 41 EELESITKLVVAGE-KVASIQG------IEYL----TNLEYLNLNGNQI-TDISP-LSNLVKLTNLYIGTN-KITDISAL 106 (347)
T ss_dssp HHHTTCSEEECCSS-CCCCCTT------GGGC----TTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSS-CCCCCGGG
T ss_pred hhcccccEEEEeCC-ccccchh------hhhc----CCccEEEccCCcc-ccchh-hhcCCcCCEEEccCC-cccCchHH
Confidence 45666777777664 4554421 3334 6677777766643 44444 666667777777665 33445556
Q ss_pred CCCCCccEEEecccCCCcccCcccccCCCCCccEEecCCCCCccccccccCCCCcceEEeecccCccccchhhccccccc
Q 035732 170 ALPSKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCRWLTFIAAVQLPSSLKKLQIRRCDNIRTLTAEEGIQCSSG 249 (559)
Q Consensus 170 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 249 (559)
..+++|++|++++|. +..++.. ..+++|++|++++|.....++....+++|+.|++.++. +..++.
T Consensus 107 ~~l~~L~~L~l~~n~-i~~~~~~---~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--------- 172 (347)
T 4fmz_A 107 QNLTNLRELYLNEDN-ISDISPL---ANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--------- 172 (347)
T ss_dssp TTCTTCSEEECTTSC-CCCCGGG---TTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG---------
T ss_pred cCCCcCCEEECcCCc-ccCchhh---ccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh---------
Confidence 666666666666665 3333331 34455666666666444433333333444444443321 111110
Q ss_pred cccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccc
Q 035732 250 RRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLK 329 (559)
Q Consensus 250 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 329 (559)
+ ..+ ++|++|++++|..... +. +..+++|+.+++++|....
T Consensus 173 -------------------------------~-----~~l-~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~ 213 (347)
T 4fmz_A 173 -------------------------------I-----ANL-TDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITD 213 (347)
T ss_dssp -------------------------------G-----GGC-TTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCC
T ss_pred -------------------------------h-----ccC-CCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCC
Confidence 0 111 3455555555443221 11 4455555555555554433
Q ss_pred cccccCCCCCccceeecccccCceecCCCCCCCCCccEEeccccccccccccccccCCCcceEEecCCCCCCcCCCCCCC
Q 035732 330 ILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALPKGLHNLTSLQHLTIGGALPSLEEDGLPTN 409 (559)
Q Consensus 330 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~l~~~~~~~~~~~ 409 (559)
..+ +..+++|++|++++|.. ..++. +..+++|+.|++++|. +..++....+++
T Consensus 214 ~~~--~~~~~~L~~L~l~~n~l-~~~~~-~~~l~~L~~L~l~~n~-----------------------l~~~~~~~~l~~ 266 (347)
T 4fmz_A 214 ITP--VANMTRLNSLKIGNNKI-TDLSP-LANLSQLTWLEIGTNQ-----------------------ISDINAVKDLTK 266 (347)
T ss_dssp CGG--GGGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSSC-----------------------CCCCGGGTTCTT
T ss_pred Cch--hhcCCcCCEEEccCCcc-CCCcc-hhcCCCCCEEECCCCc-----------------------cCCChhHhcCCC
Confidence 211 44445555555555422 22221 3333445555555443 333333333444
Q ss_pred CceeeecCccchhhhhhhcccccccCccccEEEEeecCCCceeecccccccccccccccccceeeccccccccccccccc
Q 035732 410 LQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSSSIV 489 (559)
Q Consensus 410 L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 489 (559)
|++|++++|. +.+. ..+..+++|+.|++++|. +...... .+..+++|+.|++++|+ +..++. +.
T Consensus 267 L~~L~l~~n~-l~~~-----~~~~~l~~L~~L~L~~n~--l~~~~~~------~l~~l~~L~~L~L~~n~-l~~~~~-~~ 330 (347)
T 4fmz_A 267 LKMLNVGSNQ-ISDI-----SVLNNLSQLNSLFLNNNQ--LGNEDME------VIGGLTNLTTLFLSQNH-ITDIRP-LA 330 (347)
T ss_dssp CCEEECCSSC-CCCC-----GGGGGCTTCSEEECCSSC--CCGGGHH------HHHTCTTCSEEECCSSS-CCCCGG-GG
T ss_pred cCEEEccCCc-cCCC-----hhhcCCCCCCEEECcCCc--CCCcChh------HhhccccCCEEEccCCc-cccccC-hh
Confidence 5555555544 2221 124455556666665553 2212211 14455666677777654 444433 56
Q ss_pred cCCCcCeEEecCC
Q 035732 490 DLQNLTLLQLWGC 502 (559)
Q Consensus 490 ~~~~L~~L~l~~c 502 (559)
.+++|++|++++|
T Consensus 331 ~l~~L~~L~l~~N 343 (347)
T 4fmz_A 331 SLSKMDSADFANQ 343 (347)
T ss_dssp GCTTCSEESSSCC
T ss_pred hhhccceeehhhh
Confidence 6777777777774
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=1.6e-24 Score=213.62 Aligned_cols=300 Identities=17% Similarity=0.173 Sum_probs=186.7
Q ss_pred CceeEEecccCCCCcccCCCCCCCCccceeeccCCCCccccCCCCCCCCccEEEecccCCCcccCcccccCCCCCccEEe
Q 035732 126 CRLEYLGLTSCHGLVKLPQSSFSLSSLREIEIYNCSSLVSFPEVALPSKLKKIRISYCGALKSLPEAWMCDTNSSLEILN 205 (559)
Q Consensus 126 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 205 (559)
++|++|+++++.. ..++. +..+++|++|++++| .+..++.+..+++|++|++++|. +..++.. ..+++|++|+
T Consensus 44 ~~L~~L~l~~~~i-~~~~~-~~~~~~L~~L~l~~n-~i~~~~~~~~l~~L~~L~L~~n~-i~~~~~~---~~l~~L~~L~ 116 (347)
T 4fmz_A 44 ESITKLVVAGEKV-ASIQG-IEYLTNLEYLNLNGN-QITDISPLSNLVKLTNLYIGTNK-ITDISAL---QNLTNLRELY 116 (347)
T ss_dssp TTCSEEECCSSCC-CCCTT-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGGG---TTCTTCSEEE
T ss_pred ccccEEEEeCCcc-ccchh-hhhcCCccEEEccCC-ccccchhhhcCCcCCEEEccCCc-ccCchHH---cCCCcCCEEE
Confidence 7888888888754 55554 777888888888887 34445557777788888887775 4444432 4456677777
Q ss_pred cCCCCCccccccccCCCCcceEEeecccCccccchhhccccccccccccCCccEEEEecCCCccccccCCCCCccccccc
Q 035732 206 IEHCRWLTFIAAVQLPSSLKKLQIRRCDNIRTLTAEEGIQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLE 285 (559)
Q Consensus 206 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~ 285 (559)
+++|. +..++....+++ |++|++++|..+.
T Consensus 117 l~~n~-i~~~~~~~~l~~---------------------------------L~~L~l~~n~~~~---------------- 146 (347)
T 4fmz_A 117 LNEDN-ISDISPLANLTK---------------------------------MYSLNLGANHNLS---------------- 146 (347)
T ss_dssp CTTSC-CCCCGGGTTCTT---------------------------------CCEEECTTCTTCC----------------
T ss_pred CcCCc-ccCchhhccCCc---------------------------------eeEEECCCCCCcc----------------
Confidence 76663 333322222233 3444443322221
Q ss_pred cCCCCCCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCc
Q 035732 286 VGNLPPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKL 365 (559)
Q Consensus 286 ~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 365 (559)
.++ .+..+++|++|++++|......+ +..+++|++|++++|.. ..++. +..+++|
T Consensus 147 --------------------~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l-~~~~~-~~~l~~L 201 (347)
T 4fmz_A 147 --------------------DLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI-EDISP-LASLTSL 201 (347)
T ss_dssp --------------------CCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCC-CCCGG-GGGCTTC
T ss_pred --------------------ccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcc-ccccc-ccCCCcc
Confidence 111 13333344444444433222111 34445555555554422 22222 3334466
Q ss_pred cEEeccccccccccccccccCCCcceEEecC-CCCCCcCCCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEe
Q 035732 366 TRLEIYDCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEEDGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTIS 444 (559)
Q Consensus 366 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~ 444 (559)
+.+++++|.... ++. +..+++|++|++++ .+..++....+++|++|++++|. +... ..+..+++|+.|+++
T Consensus 202 ~~L~l~~n~l~~-~~~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~-----~~~~~l~~L~~L~l~ 273 (347)
T 4fmz_A 202 HYFTAYVNQITD-ITP-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQ-ISDI-----NAVKDLTKLKMLNVG 273 (347)
T ss_dssp CEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCCC-----GGGTTCTTCCEEECC
T ss_pred ceeecccCCCCC-Cch-hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCc-cCCC-----hhHhcCCCcCEEEcc
Confidence 666666664332 222 66677777777777 66666666677899999999997 4432 247889999999999
Q ss_pred ecCCCceeecccccccccccccccccceeeccccccccccccccccCCCcCeEEecCCCCCcccCCCCCCCCceEEEecC
Q 035732 445 RCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSSSIVDLQNLTLLQLWGCPKLKYFPKKGLPSSLLELDIVG 524 (559)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~ 524 (559)
+|. +..++ .+..+++|+.|++++|......+..+..+++|++|++++| .++.++....+++|++|++++
T Consensus 274 ~n~--l~~~~--------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 274 SNQ--ISDIS--------VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN-HITDIRPLASLSKMDSADFAN 342 (347)
T ss_dssp SSC--CCCCG--------GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS-SCCCCGGGGGCTTCSEESSSC
T ss_pred CCc--cCCCh--------hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC-ccccccChhhhhccceeehhh
Confidence 984 33343 2667899999999997655555666788999999999996 577776644468999999999
Q ss_pred Ch
Q 035732 525 CP 526 (559)
Q Consensus 525 c~ 526 (559)
|+
T Consensus 343 N~ 344 (347)
T 4fmz_A 343 QV 344 (347)
T ss_dssp C-
T ss_pred hc
Confidence 86
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=8.9e-24 Score=217.68 Aligned_cols=175 Identities=20% Similarity=0.241 Sum_probs=88.6
Q ss_pred CccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEecc
Q 035732 292 SLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIY 371 (559)
Q Consensus 292 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 371 (559)
+|++|++++|......+..+.++++|+.|++++|.+....+..+..+++|++|++++|.....++.......+|+.|+++
T Consensus 153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 232 (477)
T 2id5_A 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT 232 (477)
T ss_dssp TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEE
T ss_pred CCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECc
Confidence 45555555544433334445555555555555555444444445555566666665555555555444444456666665
Q ss_pred ccccccccc-cccccCCCcceEEecC-CCCCCcC--CCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecC
Q 035732 372 DCKRLEALP-KGLHNLTSLQHLTIGG-ALPSLEE--DGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCD 447 (559)
Q Consensus 372 ~~~~~~~~~-~~l~~l~~L~~L~l~~-~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~ 447 (559)
+|.. ..+| ..+..+++|+.|++++ .+..++. ...+++|++|++++|. +....+ ..+..+++|+.|++++|.
T Consensus 233 ~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~---~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 233 HCNL-TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVEP---YAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp SSCC-CSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC-CSEECT---TTBTTCTTCCEEECCSSC
T ss_pred CCcc-cccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc-cceECH---HHhcCcccCCEEECCCCc
Confidence 5543 2333 3445555666666655 4444332 3344556666666555 332222 245555666666666552
Q ss_pred CCceeecccccccccccccccccceeeccccc
Q 035732 448 DDMVSFPLENKRLGTALPLLASLTSLGISRFP 479 (559)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 479 (559)
+..++... +..+++|+.|++++|+
T Consensus 308 --l~~~~~~~------~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 308 --LTTLEESV------FHSVGNLETLILDSNP 331 (477)
T ss_dssp --CSCCCGGG------BSCGGGCCEEECCSSC
T ss_pred --CceeCHhH------cCCCcccCEEEccCCC
Confidence 33333322 4455566666666543
No 34
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=3e-24 Score=218.29 Aligned_cols=372 Identities=25% Similarity=0.247 Sum_probs=236.2
Q ss_pred CCCCccEEEeccccCccEEeccCchhhhccCCCcEEEeccCCCccccccchHHHHHhhhh--------h-ccCceeEEec
Q 035732 63 RIPKLEELEIKNIKNETYIWKSHDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLC--------E-LSCRLEYLGL 133 (559)
Q Consensus 63 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~--------~-~~~~L~~L~l 133 (559)
...+|++|.++++ ++.. +|. .++.+++|++|++++|.-...+|.. ++.+. . ...++++|++
T Consensus 9 ~~~~L~~L~l~~n-~l~~---iP~-~i~~L~~L~~L~l~~n~~~~~~p~~-----~~~l~~L~~l~l~~c~~~~l~~L~l 78 (454)
T 1jl5_A 9 SNTFLQEPLRHSS-NLTE---MPV-EAENVKSKTEYYNAWSEWERNAPPG-----NGEQREMAVSRLRDCLDRQAHELEL 78 (454)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHTSCTT-----SCCCHHHHHHHHHHHHHHTCSEEEC
T ss_pred ccccchhhhcccC-chhh---CCh-hHhcccchhhhhccCCcccccCCcc-----cccchhcchhhhhhhhccCCCEEEe
Confidence 3578899998877 4544 664 5799999999999987422233332 12110 0 1145799999
Q ss_pred ccCCCCcccCCCCCCCCccceeeccCCCCccccCCCCCCCCccEEEecccCCCcccCcccccCCCCCccEEecCCCCCcc
Q 035732 134 TSCHGLVKLPQSSFSLSSLREIEIYNCSSLVSFPEVALPSKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCRWLT 213 (559)
Q Consensus 134 ~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 213 (559)
++|.. ..+|.. .++|++|++++|.. ..+|. .+++|++|++++|. +..++.. .++|++|++++|. ++
T Consensus 79 ~~~~l-~~lp~~---~~~L~~L~l~~n~l-~~lp~--~~~~L~~L~l~~n~-l~~l~~~-----~~~L~~L~L~~n~-l~ 144 (454)
T 1jl5_A 79 NNLGL-SSLPEL---PPHLESLVASCNSL-TELPE--LPQSLKSLLVDNNN-LKALSDL-----PPLLEYLGVSNNQ-LE 144 (454)
T ss_dssp TTSCC-SCCCSC---CTTCSEEECCSSCC-SSCCC--CCTTCCEEECCSSC-CSCCCSC-----CTTCCEEECCSSC-CS
T ss_pred cCCcc-ccCCCC---cCCCCEEEccCCcC-Ccccc--ccCCCcEEECCCCc-cCcccCC-----CCCCCEEECcCCC-CC
Confidence 99864 677763 47899999998854 44664 34899999999987 5555432 1679999999995 56
Q ss_pred ccccccCCCCcceEEeecccCccccchhhccccccccccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCCc
Q 035732 214 FIAAVQLPSSLKKLQIRRCDNIRTLTAEEGIQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSL 293 (559)
Q Consensus 214 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L 293 (559)
.++....+++|++|+++++ .++.++.... +|++|++++ +.++. ++ .+ ..+ ++|
T Consensus 145 ~lp~~~~l~~L~~L~l~~N-~l~~lp~~~~------------~L~~L~L~~-n~l~~-l~------~~-----~~l-~~L 197 (454)
T 1jl5_A 145 KLPELQNSSFLKIIDVDNN-SLKKLPDLPP------------SLEFIAAGN-NQLEE-LP------EL-----QNL-PFL 197 (454)
T ss_dssp SCCCCTTCTTCCEEECCSS-CCSCCCCCCT------------TCCEEECCS-SCCSS-CC------CC-----TTC-TTC
T ss_pred CCcccCCCCCCCEEECCCC-cCcccCCCcc------------cccEEECcC-CcCCc-Cc------cc-----cCC-CCC
Confidence 6776677899999999985 5666654332 399999998 45654 22 12 344 689
Q ss_pred cEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEecccc
Q 035732 294 KSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDC 373 (559)
Q Consensus 294 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 373 (559)
++|++++|.... +|. ...+|++|++++|.+. .+| .+..+++|++|++++|.. ..+|.. +++|+.|++++|
T Consensus 198 ~~L~l~~N~l~~-l~~---~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l-~~l~~~---~~~L~~L~l~~N 267 (454)
T 1jl5_A 198 TAIYADNNSLKK-LPD---LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLL-KTLPDL---PPSLEALNVRDN 267 (454)
T ss_dssp CEEECCSSCCSS-CCC---CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCC-SSCCSC---CTTCCEEECCSS
T ss_pred CEEECCCCcCCc-CCC---CcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcC-Cccccc---ccccCEEECCCC
Confidence 999999987543 332 2358999999999766 566 488999999999999854 445542 358999999998
Q ss_pred ccccccccccccCCCcceEEecC-CCCCCcCCCCCCCCceeeecCccchhhhhhhcccccccC-ccccEEEEeecCCCce
Q 035732 374 KRLEALPKGLHNLTSLQHLTIGG-ALPSLEEDGLPTNLQLLNIEGNMEIWKSMIERGRGFHRF-SSLRRLTISRCDDDMV 451 (559)
Q Consensus 374 ~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~ 451 (559)
.. ..+|.. +++|+.|++++ .++.++. .+++|++|++++|. +.. +..+ ++|+.|++++|. +.
T Consensus 268 ~l-~~l~~~---~~~L~~L~ls~N~l~~l~~--~~~~L~~L~l~~N~-l~~--------i~~~~~~L~~L~Ls~N~--l~ 330 (454)
T 1jl5_A 268 YL-TDLPEL---PQSLTFLDVSENIFSGLSE--LPPNLYYLNASSNE-IRS--------LCDLPPSLEELNVSNNK--LI 330 (454)
T ss_dssp CC-SCCCCC---CTTCCEEECCSSCCSEESC--CCTTCCEEECCSSC-CSE--------ECCCCTTCCEEECCSSC--CS
T ss_pred cc-cccCcc---cCcCCEEECcCCccCcccC--cCCcCCEEECcCCc-CCc--------ccCCcCcCCEEECCCCc--cc
Confidence 64 446653 37899999998 7766543 34799999999997 432 2234 589999999974 33
Q ss_pred eecccccccccccccccccceeeccccccccccccccccCCCcCeEEecCCCCCcccCC--CCC---------------C
Q 035732 452 SFPLENKRLGTALPLLASLTSLGISRFPNLERLSSSIVDLQNLTLLQLWGCPKLKYFPK--KGL---------------P 514 (559)
Q Consensus 452 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~---------------~ 514 (559)
.++. .+++|+.|++++| .++.+|. .+++|++|++++ +.++.+|. .++ +
T Consensus 331 ~lp~----------~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~-N~l~~l~~ip~~l~~L~~n~~~~~i~~~~ 395 (454)
T 1jl5_A 331 ELPA----------LPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEY-NPLREFPDIPESVEDLRMNSHLAEVPELP 395 (454)
T ss_dssp CCCC----------CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCS-SCCSSCCCCCTTCCEEECCC---------
T ss_pred cccc----------cCCcCCEEECCCC-ccccccc---hhhhccEEECCC-CCCCcCCCChHHHHhhhhccccccccccc
Confidence 4444 2489999999995 6778886 478999999999 46666432 111 1
Q ss_pred CCceEEEecCChh
Q 035732 515 SSLLELDIVGCPL 527 (559)
Q Consensus 515 ~~L~~L~l~~c~~ 527 (559)
++|+.|++++|+.
T Consensus 396 ~~L~~L~ls~N~l 408 (454)
T 1jl5_A 396 QNLKQLHVETNPL 408 (454)
T ss_dssp -------------
T ss_pred CcCCEEECCCCcC
Confidence 6788888888653
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=4.1e-24 Score=217.41 Aligned_cols=349 Identities=18% Similarity=0.169 Sum_probs=189.1
Q ss_pred ccCCCccCccEEeecCCCceEeeccCCccCcccceeeecCCcceeecCCCCCCCCCccEEEeccccCccEEeccCchhhh
Q 035732 11 VSVSSLPAFCKLEIDGCKKVLWRSATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHDELLQ 90 (559)
Q Consensus 11 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 90 (559)
.+++.+++|++|++++|.....+.. ..+++|++|+++++ .++. ++ ++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~~~l--------------------------~~l~~L~~L~Ls~n-~l~~---~~---~~ 82 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDMTGI--------------------------EKLTGLTKLICTSN-NITT---LD---LS 82 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCCTTG--------------------------GGCTTCSEEECCSS-CCSC---CC---CT
T ss_pred cChhHcCCCCEEEccCCCcccChhh--------------------------cccCCCCEEEccCC-cCCe---Ec---cc
Confidence 4566677777777777644332110 13677777777776 3444 32 56
Q ss_pred ccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccCCCCCCCCccceeeccCCCCccccCCCC
Q 035732 91 DICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLPQSSFSLSSLREIEIYNCSSLVSFPEVA 170 (559)
Q Consensus 91 ~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 170 (559)
.+++|++|++++| .++.++ +..+ ++|++|++++|.. ..+| +..+++|++|++++|.. ..++ +.
T Consensus 83 ~l~~L~~L~Ls~N-~l~~~~-------~~~l----~~L~~L~L~~N~l-~~l~--~~~l~~L~~L~l~~N~l-~~l~-l~ 145 (457)
T 3bz5_A 83 QNTNLTYLACDSN-KLTNLD-------VTPL----TKLTYLNCDTNKL-TKLD--VSQNPLLTYLNCARNTL-TEID-VS 145 (457)
T ss_dssp TCTTCSEEECCSS-CCSCCC-------CTTC----TTCCEEECCSSCC-SCCC--CTTCTTCCEEECTTSCC-SCCC-CT
T ss_pred cCCCCCEEECcCC-CCceee-------cCCC----CcCCEEECCCCcC-Ceec--CCCCCcCCEEECCCCcc-ceec-cc
Confidence 6777777777775 455542 3344 7777777777754 4444 66777777777777643 3333 66
Q ss_pred CCCCccEEEecccCCCcccCcccccCCCCCccEEecCCCCCccccccccCCCCcceEEeecccCccccchhhcccccccc
Q 035732 171 LPSKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCRWLTFIAAVQLPSSLKKLQIRRCDNIRTLTAEEGIQCSSGR 250 (559)
Q Consensus 171 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 250 (559)
.+++|++|++++|..+..++. ..+++|++|++++|. ++.++ ...+++|+.|+++++ .++.++.
T Consensus 146 ~l~~L~~L~l~~n~~~~~~~~----~~l~~L~~L~ls~n~-l~~l~-l~~l~~L~~L~l~~N-~l~~~~l---------- 208 (457)
T 3bz5_A 146 HNTQLTELDCHLNKKITKLDV----TPQTQLTTLDCSFNK-ITELD-VSQNKLLNRLNCDTN-NITKLDL---------- 208 (457)
T ss_dssp TCTTCCEEECTTCSCCCCCCC----TTCTTCCEEECCSSC-CCCCC-CTTCTTCCEEECCSS-CCSCCCC----------
T ss_pred cCCcCCEEECCCCCccccccc----ccCCcCCEEECCCCc-cceec-cccCCCCCEEECcCC-cCCeecc----------
Confidence 667777777777755554421 344667777777663 44333 333445555555542 2222210
Q ss_pred ccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEcCCCCccchHHhhccCCCCceEEeeecCcccc
Q 035732 251 RYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKI 330 (559)
Q Consensus 251 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 330 (559)
..+ ++|+.|++++|.... +| +..+++|+.|++++|.+...
T Consensus 209 ------------------------------------~~l-~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 209 ------------------------------------NQN-IQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp ------------------------------------TTC-TTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred ------------------------------------ccC-CCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc
Confidence 122 344555554444322 22 44445555555555544332
Q ss_pred ccccCCCC-------CccceeecccccCceecCCCCCCCCCccEEeccccccccccccccccCCCcceEEecCCCCCCcC
Q 035732 331 LPSGLHNL-------RQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALPKGLHNLTSLQHLTIGGALPSLEE 403 (559)
Q Consensus 331 ~~~~~~~l-------~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~l~~~~~ 403 (559)
.+..+..+ .+|+.|++++|.....+|. ..+++|+.|++++|...+.+|. ..++|+.+++
T Consensus 249 ~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~--~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l--------- 314 (457)
T 3bz5_A 249 DVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA--EGCRKIKELDVTHNTQLYLLDC---QAAGITELDL--------- 314 (457)
T ss_dssp CCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC--TTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCC---------
T ss_pred CHHHCCCCCEEeccCCCCCEEECCCCccCCcccc--cccccCCEEECCCCcccceecc---CCCcceEech---------
Confidence 11111111 1455666666665555552 3456778888887776666553 2233333333
Q ss_pred CCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCCCceeecccccccccccccccccceeeccccccccc
Q 035732 404 DGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLER 483 (559)
Q Consensus 404 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 483 (559)
..+++|++|++++|+ ++.. .+..+++|+.|++++|. +..++.|+.|++++ +.+..
T Consensus 315 -~~~~~L~~L~L~~N~-l~~l------~l~~l~~L~~L~l~~N~----------------l~~l~~L~~L~l~~-n~l~g 369 (457)
T 3bz5_A 315 -SQNPKLVYLYLNNTE-LTEL------DVSHNTKLKSLSCVNAH----------------IQDFSSVGKIPALN-NNFEA 369 (457)
T ss_dssp -TTCTTCCEEECTTCC-CSCC------CCTTCTTCSEEECCSSC----------------CCBCTTGGGSSGGG-TSEEE
T ss_pred -hhcccCCEEECCCCc-cccc------ccccCCcCcEEECCCCC----------------CCCccccccccccC-CcEEe
Confidence 234677777777777 4332 26677788888887763 22234555555555 22222
Q ss_pred cccccccCCCcCeEEecCCCCCc-ccCC
Q 035732 484 LSSSIVDLQNLTLLQLWGCPKLK-YFPK 510 (559)
Q Consensus 484 ~~~~~~~~~~L~~L~l~~c~~l~-~l~~ 510 (559)
. ..+..|+.+++++ ++++ .+|.
T Consensus 370 ~----~~~~~l~~l~l~~-N~l~g~ip~ 392 (457)
T 3bz5_A 370 E----GQTITMPKETLTN-NSLTIAVSP 392 (457)
T ss_dssp E----EEEEECCCBCCBT-TBEEEECCT
T ss_pred c----ceeeecCcccccc-CcEEEEcCh
Confidence 2 2344556666666 3443 3444
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.8e-23 Score=221.04 Aligned_cols=309 Identities=17% Similarity=0.164 Sum_probs=242.9
Q ss_pred CCCCccEEEeccccCccEEeccCchhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCccc
Q 035732 63 RIPKLEELEIKNIKNETYIWKSHDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKL 142 (559)
Q Consensus 63 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~ 142 (559)
.+.+++.+++.++ .+.. +++..+..+++|++|+++++ .++.+++. .+..+ ++|++|++++|......
T Consensus 49 ~l~~l~~l~l~~~-~l~~---lp~~~~~~l~~L~~L~L~~n-~l~~~~~~----~~~~l----~~L~~L~L~~n~l~~~~ 115 (597)
T 3oja_B 49 TLNNQKIVTFKNS-TMRK---LPAALLDSFRQVELLNLNDL-QIEEIDTY----AFAYA----HTIQKLYMGFNAIRYLP 115 (597)
T ss_dssp GGCCCSEEEESSC-EESE---ECTHHHHHCCCCSEEECTTS-CCCEECTT----TTTTC----TTCCEEECCSSCCCCCC
T ss_pred cCCCceEEEeeCC-CCCC---cCHHHHccCCCCcEEECCCC-CCCCCChH----HhcCC----CCCCEEECCCCcCCCCC
Confidence 3678899999877 4555 88888899999999999996 68887764 35566 99999999999764445
Q ss_pred CCCCCCCCccceeeccCCCCccccCC--CCCCCCccEEEecccCCCcccCcccccCCCCCccEEecCCCCCccccccccC
Q 035732 143 PQSSFSLSSLREIEIYNCSSLVSFPE--VALPSKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCRWLTFIAAVQL 220 (559)
Q Consensus 143 ~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 220 (559)
|..+..+++|++|++++|. +..+|. +..+++|++|++++|. +..++...+ ..+++|++|++++|. ++.++ ...
T Consensus 116 ~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~-~~~ 190 (597)
T 3oja_B 116 PHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTF-QATTSLQNLQLSSNR-LTHVD-LSL 190 (597)
T ss_dssp TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTT-TTCTTCCEEECTTSC-CSBCC-GGG
T ss_pred HHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhh-hcCCcCcEEECcCCC-CCCcC-hhh
Confidence 5667999999999999985 445553 5789999999999998 444444322 456899999999995 55443 355
Q ss_pred CCCcceEEeecccCccccchhhccccccccccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEcC
Q 035732 221 PSSLKKLQIRRCDNIRTLTAEEGIQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYG 300 (559)
Q Consensus 221 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~ 300 (559)
+++|+.|+++++ .+..++.. +.|+.|++++ +.+.. ++. ..+++|+.|++++
T Consensus 191 l~~L~~L~l~~n-~l~~l~~~-------------~~L~~L~ls~-n~l~~-~~~-------------~~~~~L~~L~L~~ 241 (597)
T 3oja_B 191 IPSLFHANVSYN-LLSTLAIP-------------IAVEELDASH-NSINV-VRG-------------PVNVELTILKLQH 241 (597)
T ss_dssp CTTCSEEECCSS-CCSEEECC-------------TTCSEEECCS-SCCCE-EEC-------------SCCSCCCEEECCS
T ss_pred hhhhhhhhcccC-ccccccCC-------------chhheeeccC-Ccccc-ccc-------------ccCCCCCEEECCC
Confidence 789999999884 44443321 1399999998 55654 332 2336899999999
Q ss_pred CCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEeccccccccccc
Q 035732 301 CSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALP 380 (559)
Q Consensus 301 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 380 (559)
|..... ..+..+++|+.|++++|.+....|..+..+++|+.|++++|. +..+|.....+++|+.|++++|.. ..+|
T Consensus 242 n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~l-~~i~ 317 (597)
T 3oja_B 242 NNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHL-LHVE 317 (597)
T ss_dssp SCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECSSSCCTTCCEEECCSSCC-CCCG
T ss_pred CCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCcccccCCCCcEEECCCCCC-CccC
Confidence 876553 578899999999999999888888899999999999999984 456777777788999999999964 4788
Q ss_pred cccccCCCcceEEecC-CCCCCcCCCCCCCCceeeecCccchhh
Q 035732 381 KGLHNLTSLQHLTIGG-ALPSLEEDGLPTNLQLLNIEGNMEIWK 423 (559)
Q Consensus 381 ~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~l~~ 423 (559)
..+..+++|+.|++++ .+..++ ...+++|+.|++++|+..-+
T Consensus 318 ~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 318 RNQPQFDRLENLYLDHNSIVTLK-LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp GGHHHHTTCSEEECCSSCCCCCC-CCTTCCCSEEECCSSCEEHH
T ss_pred cccccCCCCCEEECCCCCCCCcC-hhhcCCCCEEEeeCCCCCCh
Confidence 8889999999999999 777764 56678999999999984333
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=6.2e-23 Score=211.37 Aligned_cols=294 Identities=20% Similarity=0.164 Sum_probs=187.4
Q ss_pred CCccEEEeccccCccEEeccCchhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccCC
Q 035732 65 PKLEELEIKNIKNETYIWKSHDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLPQ 144 (559)
Q Consensus 65 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~~ 144 (559)
++++.|+++++ +++. +++..+..+++|++|+|+++ .++.+.+. .+..+ ++|++|++++|.. ..+|.
T Consensus 32 ~~l~~L~L~~n-~l~~---~~~~~~~~l~~L~~L~L~~n-~i~~~~~~----~~~~l----~~L~~L~L~~n~l-~~~~~ 97 (477)
T 2id5_A 32 TETRLLDLGKN-RIKT---LNQDEFASFPHLEELELNEN-IVSAVEPG----AFNNL----FNLRTLGLRSNRL-KLIPL 97 (477)
T ss_dssp TTCSEEECCSS-CCCE---ECTTTTTTCTTCCEEECTTS-CCCEECTT----TTTTC----TTCCEEECCSSCC-CSCCT
T ss_pred CCCcEEECCCC-ccce---ECHhHccCCCCCCEEECCCC-ccCEeChh----hhhCC----ccCCEEECCCCcC-CccCc
Confidence 57888888877 4555 66667788888888888885 67666553 35555 8888888888765 55554
Q ss_pred -CCCCCCccceeeccCCCCccccC-CCCCCCCccEEEecccCCCcccCcccccCCCCCccEEecCCCCCccccccc--cC
Q 035732 145 -SSFSLSSLREIEIYNCSSLVSFP-EVALPSKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCRWLTFIAAV--QL 220 (559)
Q Consensus 145 -~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~ 220 (559)
.+..+++|++|++++|......+ .+..+++|++|++++|......+..+ .++++|++|++++|. ++.++.. ..
T Consensus 98 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~-l~~~~~~~l~~ 174 (477)
T 2id5_A 98 GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF--SGLNSLEQLTLEKCN-LTSIPTEALSH 174 (477)
T ss_dssp TSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSS--TTCTTCCEEEEESCC-CSSCCHHHHTT
T ss_pred ccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhc--cCCCCCCEEECCCCc-CcccChhHhcc
Confidence 46788888888888876544444 36778888888888877333323232 455788888888874 4544432 56
Q ss_pred CCCcceEEeecccCccccchhhccccccccccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEcC
Q 035732 221 PSSLKKLQIRRCDNIRTLTAEEGIQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYG 300 (559)
Q Consensus 221 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~ 300 (559)
+++|+.|++.++ .+..++..... .+ ++|++|++++++.+.. ++... ... .+|++|++++
T Consensus 175 l~~L~~L~l~~n-~i~~~~~~~~~------~l--~~L~~L~l~~~~~~~~-~~~~~----------~~~-~~L~~L~l~~ 233 (477)
T 2id5_A 175 LHGLIVLRLRHL-NINAIRDYSFK------RL--YRLKVLEISHWPYLDT-MTPNC----------LYG-LNLTSLSITH 233 (477)
T ss_dssp CTTCCEEEEESC-CCCEECTTCSC------SC--TTCCEEEEECCTTCCE-ECTTT----------TTT-CCCSEEEEES
T ss_pred cCCCcEEeCCCC-cCcEeChhhcc------cC--cccceeeCCCCccccc-cCccc----------ccC-ccccEEECcC
Confidence 778888888874 34443332221 12 2377777777654443 22211 111 3677777777
Q ss_pred CCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEeccccccccccc
Q 035732 301 CSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALP 380 (559)
Q Consensus 301 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 380 (559)
|......+..+..+++|++|++++|.+....+..+..+++|++|++++|......+..+..+++|+.|++++|......+
T Consensus 234 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 313 (477)
T 2id5_A 234 CNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEE 313 (477)
T ss_dssp SCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCG
T ss_pred CcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCH
Confidence 76554444566777777777777776655555556677777777777775544445555666677777777765433333
Q ss_pred cccccCCCcceEEecC
Q 035732 381 KGLHNLTSLQHLTIGG 396 (559)
Q Consensus 381 ~~l~~l~~L~~L~l~~ 396 (559)
..+..+++|+.|++++
T Consensus 314 ~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 314 SVFHSVGNLETLILDS 329 (477)
T ss_dssp GGBSCGGGCCEEECCS
T ss_pred hHcCCCcccCEEEccC
Confidence 3455666666666655
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=8.3e-23 Score=204.61 Aligned_cols=303 Identities=16% Similarity=0.154 Sum_probs=183.0
Q ss_pred ccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccCCCCCCCCccceeeccCCCCccccCC-C
Q 035732 91 DICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLPQSSFSLSSLREIEIYNCSSLVSFPE-V 169 (559)
Q Consensus 91 ~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~ 169 (559)
.++++++|+++++ .++.++.. .+..+ ++|++|++++|......+..+..+++|++|++++|......+. +
T Consensus 43 ~l~~l~~l~l~~~-~l~~l~~~----~~~~l----~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 113 (390)
T 3o6n_A 43 TLNNQKIVTFKNS-TMRKLPAA----LLDSF----RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 113 (390)
T ss_dssp GGCCCSEEEEESC-EESEECTH----HHHHC----CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ccCCceEEEecCC-chhhCChh----Hhccc----ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHh
Confidence 4799999999996 78888875 35666 9999999999976434445889999999999999865444443 7
Q ss_pred CCCCCccEEEecccCCCcccCcccccCCCCCccEEecCCCCCcccccc--ccCCCCcceEEeecccCccccchhhccccc
Q 035732 170 ALPSKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCRWLTFIAA--VQLPSSLKKLQIRRCDNIRTLTAEEGIQCS 247 (559)
Q Consensus 170 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 247 (559)
..+++|++|++++|. +..+|...+ ..+++|++|++++|. ++.++. ...+++|+.|+++++ .++.++...
T Consensus 114 ~~l~~L~~L~L~~n~-l~~l~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~----- 184 (390)
T 3o6n_A 114 QNVPLLTVLVLERND-LSSLPRGIF-HNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSN-RLTHVDLSL----- 184 (390)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTT-TTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSS-CCSBCCGGG-----
T ss_pred cCCCCCCEEECCCCc-cCcCCHHHh-cCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCC-cCCcccccc-----
Confidence 889999999999997 667776533 456889999999985 444432 245677788877763 343332211
Q ss_pred cccccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEcCCCCccchHHhhccCCCCceEEeeecCc
Q 035732 248 SGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGT 327 (559)
Q Consensus 248 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 327 (559)
+ ++|+.|++++ +.+.. + ..|.++++|++++|..... +. ...++|++|++++|.+
T Consensus 185 ----l--~~L~~L~l~~-n~l~~-~---------------~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l 238 (390)
T 3o6n_A 185 ----I--PSLFHANVSY-NLLST-L---------------AIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNL 238 (390)
T ss_dssp ----C--TTCSEEECCS-SCCSE-E---------------ECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCC
T ss_pred ----c--cccceeeccc-ccccc-c---------------CCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCC
Confidence 1 1266666665 33332 1 1124555666555543221 11 1224455555555443
Q ss_pred cccccccCCCCCccceeecccccCceecCCCCCCCCCccEEeccccccccccccccccCCCcceEEecC-CCCCCcC-CC
Q 035732 328 LKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEE-DG 405 (559)
Q Consensus 328 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~-~~ 405 (559)
... ..+..++ +|+.|++++|......|..+..+++|+.|++++ .+..++. ..
T Consensus 239 ~~~--~~l~~l~------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 292 (390)
T 3o6n_A 239 TDT--AWLLNYP------------------------GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQ 292 (390)
T ss_dssp CCC--GGGGGCT------------------------TCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSS
T ss_pred ccc--HHHcCCC------------------------CccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccC
Confidence 321 2333444 555555555543333344455555555555555 4444333 23
Q ss_pred CCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCCCceeecccccccccccccccccceeeccccc
Q 035732 406 LPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFP 479 (559)
Q Consensus 406 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 479 (559)
.+++|++|++++|+ +.... ..+..+++|+.|++++|. +..++ +..+++|+.|++++|+
T Consensus 293 ~l~~L~~L~L~~n~-l~~~~----~~~~~l~~L~~L~L~~N~--i~~~~---------~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 293 PIPTLKVLDLSHNH-LLHVE----RNQPQFDRLENLYLDHNS--IVTLK---------LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCTTCCEEECCSSC-CCCCG----GGHHHHTTCSEEECCSSC--CCCCC---------CCTTCCCSEEECCSSC
T ss_pred CCCCCCEEECCCCc-ceecC----ccccccCcCCEEECCCCc--cceeC---------chhhccCCEEEcCCCC
Confidence 45666777777665 33221 135567777777777764 22222 3345778888888754
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=3.2e-22 Score=203.52 Aligned_cols=319 Identities=17% Similarity=0.153 Sum_probs=209.6
Q ss_pred hhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccCCCCCCCCccceeeccCCCCccccC
Q 035732 88 LLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLPQSSFSLSSLREIEIYNCSSLVSFP 167 (559)
Q Consensus 88 ~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 167 (559)
.++.+++|++|+++++ .++.++ .+..+ ++|++|++++|.. ..+| +..+++|++|++++|. +..++
T Consensus 37 ~~~~l~~L~~L~Ls~n-~l~~~~------~l~~l----~~L~~L~Ls~n~l-~~~~--~~~l~~L~~L~Ls~N~-l~~~~ 101 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNS-SITDMT------GIEKL----TGLTKLICTSNNI-TTLD--LSQNTNLTYLACDSNK-LTNLD 101 (457)
T ss_dssp EHHHHTTCCEEECCSS-CCCCCT------TGGGC----TTCSEEECCSSCC-SCCC--CTTCTTCSEEECCSSC-CSCCC
T ss_pred ChhHcCCCCEEEccCC-CcccCh------hhccc----CCCCEEEccCCcC-CeEc--cccCCCCCEEECcCCC-Cceee
Confidence 4567888888888885 666653 24555 8888888888754 5554 7778888888888874 33344
Q ss_pred CCCCCCCccEEEecccCCCcccCcccccCCCCCccEEecCCCCCccccccccCCCCcceEEeecccCccccchhhccccc
Q 035732 168 EVALPSKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCRWLTFIAAVQLPSSLKKLQIRRCDNIRTLTAEEGIQCS 247 (559)
Q Consensus 168 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 247 (559)
+..+++|++|++++|. ++.++ + ..+++|++|++++|. ++.++ ...+++
T Consensus 102 -~~~l~~L~~L~L~~N~-l~~l~--~--~~l~~L~~L~l~~N~-l~~l~-l~~l~~------------------------ 149 (457)
T 3bz5_A 102 -VTPLTKLTYLNCDTNK-LTKLD--V--SQNPLLTYLNCARNT-LTEID-VSHNTQ------------------------ 149 (457)
T ss_dssp -CTTCTTCCEEECCSSC-CSCCC--C--TTCTTCCEEECTTSC-CSCCC-CTTCTT------------------------
T ss_pred -cCCCCcCCEEECCCCc-CCeec--C--CCCCcCCEEECCCCc-cceec-cccCCc------------------------
Confidence 6777888888888876 44443 1 445777777777763 33221 222233
Q ss_pred cccccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEcCCCCccchHHhhccCCCCceEEeeecCc
Q 035732 248 SGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGT 327 (559)
Q Consensus 248 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 327 (559)
|++|+++++..+.. ++. ..+ ++|++|++++|.... ++ +..+++|++|++++|.+
T Consensus 150 ---------L~~L~l~~n~~~~~-~~~------------~~l-~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l 203 (457)
T 3bz5_A 150 ---------LTELDCHLNKKITK-LDV------------TPQ-TQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNI 203 (457)
T ss_dssp ---------CCEEECTTCSCCCC-CCC------------TTC-TTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCC
T ss_pred ---------CCEEECCCCCcccc-ccc------------ccC-CcCCEEECCCCccce-ec--cccCCCCCEEECcCCcC
Confidence 55555555433332 111 233 578888888876443 33 77888999999999876
Q ss_pred cccccccCCCCCccceeecccccCceecCCCCCCCCCccEEeccccccccccccccccCCCcceEEecCCCCCCcCCCCC
Q 035732 328 LKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALPKGLHNLTSLQHLTIGGALPSLEEDGLP 407 (559)
Q Consensus 328 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~l~~~~~~~~~ 407 (559)
... .+..+++|++|++++|.. +.+| +..+++|+.|++++|... .+| +..+++|+.|+++.
T Consensus 204 ~~~---~l~~l~~L~~L~Ls~N~l-~~ip--~~~l~~L~~L~l~~N~l~-~~~--~~~l~~L~~L~l~~----------- 263 (457)
T 3bz5_A 204 TKL---DLNQNIQLTFLDCSSNKL-TEID--VTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQ----------- 263 (457)
T ss_dssp SCC---CCTTCTTCSEEECCSSCC-SCCC--CTTCTTCSEEECCSSCCS-CCC--CTTCTTCCEEECTT-----------
T ss_pred Cee---ccccCCCCCEEECcCCcc-cccC--ccccCCCCEEEeeCCcCC-CcC--HHHCCCCCEEeccC-----------
Confidence 653 377889999999998854 4465 556778999999988643 333 45677888887744
Q ss_pred CCCceeeecCccchhhhhhhcccccccCccccEEEEeecCCCceeecccccccc-cccccccccceeecccccccccccc
Q 035732 408 TNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLG-TALPLLASLTSLGISRFPNLERLSS 486 (559)
Q Consensus 408 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~ 486 (559)
.+|+.|++++|..... + .+..+++|+.|++++|.. ...++....... -.+..+++|+.|++++ +.++.++
T Consensus 264 n~L~~L~l~~n~~~~~-~-----~~~~l~~L~~L~Ls~n~~-l~~l~~~~~~L~~L~l~~~~~L~~L~L~~-N~l~~l~- 334 (457)
T 3bz5_A 264 TDLLEIDLTHNTQLIY-F-----QAEGCRKIKELDVTHNTQ-LYLLDCQAAGITELDLSQNPKLVYLYLNN-TELTELD- 334 (457)
T ss_dssp CCCSCCCCTTCTTCCE-E-----ECTTCTTCCCCCCTTCTT-CCEEECTTCCCSCCCCTTCTTCCEEECTT-CCCSCCC-
T ss_pred CCCCEEECCCCccCCc-c-----cccccccCCEEECCCCcc-cceeccCCCcceEechhhcccCCEEECCC-Ccccccc-
Confidence 4567777777763322 1 245678888888888752 333333211000 1255667888888888 4566664
Q ss_pred ccccCCCcCeEEecCCCCCcccCC
Q 035732 487 SIVDLQNLTLLQLWGCPKLKYFPK 510 (559)
Q Consensus 487 ~~~~~~~L~~L~l~~c~~l~~l~~ 510 (559)
+..+++|+.|++++ ++++.++.
T Consensus 335 -l~~l~~L~~L~l~~-N~l~~l~~ 356 (457)
T 3bz5_A 335 -VSHNTKLKSLSCVN-AHIQDFSS 356 (457)
T ss_dssp -CTTCTTCSEEECCS-SCCCBCTT
T ss_pred -cccCCcCcEEECCC-CCCCCccc
Confidence 68899999999999 67776544
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=3.8e-22 Score=210.86 Aligned_cols=282 Identities=17% Similarity=0.117 Sum_probs=181.0
Q ss_pred ccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccCCCCCCCCccceeeccCCCCccccCC-C
Q 035732 91 DICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLPQSSFSLSSLREIEIYNCSSLVSFPE-V 169 (559)
Q Consensus 91 ~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~ 169 (559)
.+.+++.++++++ .+..++.. .+..+ ++|++|++++|......|..+..+++|++|++++|......|. +
T Consensus 49 ~l~~l~~l~l~~~-~l~~lp~~----~~~~l----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 119 (597)
T 3oja_B 49 TLNNQKIVTFKNS-TMRKLPAA----LLDSF----RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 119 (597)
T ss_dssp GGCCCSEEEESSC-EESEECTH----HHHHC----CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cCCCceEEEeeCC-CCCCcCHH----HHccC----CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHH
Confidence 4789999999986 78888875 45666 9999999999976444456899999999999999865444443 6
Q ss_pred CCCCCccEEEecccCCCcccCcccccCCCCCccEEecCCCCCcccccc--ccCCCCcceEEeecccCccccchhhccccc
Q 035732 170 ALPSKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCRWLTFIAA--VQLPSSLKKLQIRRCDNIRTLTAEEGIQCS 247 (559)
Q Consensus 170 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 247 (559)
..+++|++|++++|. +..+|...+ ..+++|++|++++|. +..++. ...+++|+.|+++++ .++.++...
T Consensus 120 ~~l~~L~~L~L~~n~-l~~l~~~~~-~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~----- 190 (597)
T 3oja_B 120 QNVPLLTVLVLERND-LSSLPRGIF-HNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSN-RLTHVDLSL----- 190 (597)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTT-TTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTS-CCSBCCGGG-----
T ss_pred cCCCCCCEEEeeCCC-CCCCCHHHh-ccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCC-CCCCcChhh-----
Confidence 889999999999997 667776543 456899999999995 444433 256788888888874 444443221
Q ss_pred cccccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEcCCCCccchHHhhccCCCCceEEeeecCc
Q 035732 248 SGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGT 327 (559)
Q Consensus 248 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 327 (559)
+ ++|+.|++++ +.+.. + ..|.+|+.|++++|..... +.. ..++|+.|++++|.+
T Consensus 191 ----l--~~L~~L~l~~-n~l~~-l---------------~~~~~L~~L~ls~n~l~~~-~~~--~~~~L~~L~L~~n~l 244 (597)
T 3oja_B 191 ----I--PSLFHANVSY-NLLST-L---------------AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNL 244 (597)
T ss_dssp ----C--TTCSEEECCS-SCCSE-E---------------ECCTTCSEEECCSSCCCEE-ECS--CCSCCCEEECCSSCC
T ss_pred ----h--hhhhhhhccc-Ccccc-c---------------cCCchhheeeccCCccccc-ccc--cCCCCCEEECCCCCC
Confidence 1 2377777776 34443 1 1225677777777654322 211 125677777777665
Q ss_pred cccccccCCCCCccceeecccccCceecCCCCCCCCCccEEeccccccccccccccccCCCcceEEecC-CCCCCcC-CC
Q 035732 328 LKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEE-DG 405 (559)
Q Consensus 328 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~-~~ 405 (559)
.. +..+..+++|+.|++++|......|..+..+++|+.|++++|.. ..+|..+..+++|+.|++++ .+..++. ..
T Consensus 245 ~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 321 (597)
T 3oja_B 245 TD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLLHVERNQP 321 (597)
T ss_dssp CC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCC-CEEECSSSCCTTCCEEECCSSCCCCCGGGHH
T ss_pred CC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCC-CCCCcccccCCCCcEEECCCCCCCccCcccc
Confidence 54 34455666666666666654444454555556666666666542 33444445555555555555 4444432 22
Q ss_pred CCCCCceeeecCcc
Q 035732 406 LPTNLQLLNIEGNM 419 (559)
Q Consensus 406 ~~~~L~~L~l~~~~ 419 (559)
.+++|+.|++++|.
T Consensus 322 ~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 322 QFDRLENLYLDHNS 335 (597)
T ss_dssp HHTTCSEEECCSSC
T ss_pred cCCCCCEEECCCCC
Confidence 33455555555554
No 41
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.88 E-value=1.1e-23 Score=223.26 Aligned_cols=421 Identities=12% Similarity=0.062 Sum_probs=247.0
Q ss_pred CCCCccEEEeccccCccEEeccC-----------chhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCc-eeE
Q 035732 63 RIPKLEELEIKNIKNETYIWKSH-----------DELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCR-LEY 130 (559)
Q Consensus 63 ~l~~L~~L~l~~~~~~~~~~~~~-----------~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~-L~~ 130 (559)
.+++|++|++.++........++ ......+++|++|++++| .++.. .+..++..+++ |++
T Consensus 71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~-------~~~~l~~~~~~~L~~ 142 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDL-------DLDRLAKARADDLET 142 (592)
T ss_dssp HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHH-------HHHHHHHHHGGGCCE
T ss_pred hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHH-------HHHHHHHhccccCcE
Confidence 57889999998876543211111 112237899999999987 44432 22222222355 999
Q ss_pred EecccCCCCc--ccCCCCCCCCccceeeccCCCCccc----cCC-CCCCCCccEEEecccCCC----cccCcccccCCCC
Q 035732 131 LGLTSCHGLV--KLPQSSFSLSSLREIEIYNCSSLVS----FPE-VALPSKLKKIRISYCGAL----KSLPEAWMCDTNS 199 (559)
Q Consensus 131 L~l~~~~~l~--~~~~~~~~l~~L~~L~l~~~~~~~~----~~~-~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~~ 199 (559)
|++++|.... .++.....+++|++|++++|..... ++. ...+++|++|++++|..- ..++..+ ..++
T Consensus 143 L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~--~~~~ 220 (592)
T 3ogk_B 143 LKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA--RNCR 220 (592)
T ss_dssp EEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHH--HHCT
T ss_pred EECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHH--hhCC
Confidence 9999886322 2223334788999999998853221 111 345788999999887732 1122111 2348
Q ss_pred CccEEecCCCCCccccccc-cCCCCcceEEeecccCccccchhhccccccccccccCCccEEEEecCCCccccccCCCCC
Q 035732 200 SLEILNIEHCRWLTFIAAV-QLPSSLKKLQIRRCDNIRTLTAEEGIQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELP 278 (559)
Q Consensus 200 ~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 278 (559)
+|++|++++|. +..++.. ..+++|+.|.+.++........... ....+ ++|+.|+++++. ...++
T Consensus 221 ~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~l~~~--~~L~~L~l~~~~-------~~~l~ 286 (592)
T 3ogk_B 221 SLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYM----NLVFP--RKLCRLGLSYMG-------PNEMP 286 (592)
T ss_dssp TCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSS----CCCCC--TTCCEEEETTCC-------TTTGG
T ss_pred CCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHH----Hhhcc--ccccccCccccc-------hhHHH
Confidence 89999999875 3334333 5568899998876432211111000 01112 248888887631 12223
Q ss_pred ccccccccCCCCCCccEEEEcCCCCccc-hHHhhccCCCCceEEeeecCccccccccCCCCCccceeeccc---------
Q 035732 279 ATLESLEVGNLPPSLKSLYVYGCSKVES-IAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQI--------- 348 (559)
Q Consensus 279 ~~~~~l~~~~l~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~--------- 348 (559)
..+.. + ++|++|++++|..... +...+..+++|++|+++++.....++..+..+++|++|++++
T Consensus 287 ~~~~~-----~-~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~ 360 (592)
T 3ogk_B 287 ILFPF-----A-AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMED 360 (592)
T ss_dssp GGGGG-----G-GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSS
T ss_pred HHHhh-----c-CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCcccccccc
Confidence 33222 2 5899999998874332 334568899999999984322223344445678899999984
Q ss_pred -ccCcee--cCCCCCCCCCccEEeccccccccccccccc-cCCCcceEEecC-----CCCCCcC-------CCCCCCCce
Q 035732 349 -CENLVS--FPEGGLPCAKLTRLEIYDCKRLEALPKGLH-NLTSLQHLTIGG-----ALPSLEE-------DGLPTNLQL 412 (559)
Q Consensus 349 -~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~-----~l~~~~~-------~~~~~~L~~ 412 (559)
|..++. +......+++|+.|+++.+......+..+. .+++|+.|++++ .++..+. ...+++|++
T Consensus 361 ~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~ 440 (592)
T 3ogk_B 361 EEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRR 440 (592)
T ss_dssp TTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCE
T ss_pred ccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCE
Confidence 433332 111123467899999955544333334443 488899999962 4443211 223688999
Q ss_pred eeecCccc-hhhhhhhcccccccCccccEEEEeecCCCceeecccccccccccccccccceeeccccccccc--cccccc
Q 035732 413 LNIEGNME-IWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLER--LSSSIV 489 (559)
Q Consensus 413 L~l~~~~~-l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~ 489 (559)
|+++.|.. +.+.... .....+++|+.|++++|......++. .+..+++|++|++++|+ +.. ++....
T Consensus 441 L~L~~~~~~l~~~~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~-------~~~~~~~L~~L~l~~n~-l~~~~~~~~~~ 510 (592)
T 3ogk_B 441 FAFYLRQGGLTDLGLS--YIGQYSPNVRWMLLGYVGESDEGLME-------FSRGCPNLQKLEMRGCC-FSERAIAAAVT 510 (592)
T ss_dssp EEEECCGGGCCHHHHH--HHHHSCTTCCEEEECSCCSSHHHHHH-------HHTCCTTCCEEEEESCC-CBHHHHHHHHH
T ss_pred EEEecCCCCccHHHHH--HHHHhCccceEeeccCCCCCHHHHHH-------HHhcCcccCeeeccCCC-CcHHHHHHHHH
Confidence 99976552 3333332 23445888999999987532222222 24466889999999987 442 333345
Q ss_pred cCCCcCeEEecCCCCCcccCCCC---CCCCceEEEecC
Q 035732 490 DLQNLTLLQLWGCPKLKYFPKKG---LPSSLLELDIVG 524 (559)
Q Consensus 490 ~~~~L~~L~l~~c~~l~~l~~~~---~~~~L~~L~l~~ 524 (559)
.+++|++|++++|+ ++...... ..|.+....+..
T Consensus 511 ~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 511 KLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp HCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEECC
T ss_pred hcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEecC
Confidence 78999999999975 55432211 235555555544
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=3.8e-21 Score=187.99 Aligned_cols=286 Identities=17% Similarity=0.136 Sum_probs=156.6
Q ss_pred CCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccCCCCCCCCccceeeccCCCCccccC-CCCC
Q 035732 93 CSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLPQSSFSLSSLREIEIYNCSSLVSFP-EVAL 171 (559)
Q Consensus 93 ~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~ 171 (559)
.+++.++++++ .++.+|... +++|++|++++|......|..+..+++|++|++++|......| .+..
T Consensus 33 c~l~~l~~~~~-~l~~ip~~~-----------~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 100 (332)
T 2ft3_A 33 CHLRVVQCSDL-GLKAVPKEI-----------SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSP 100 (332)
T ss_dssp EETTEEECCSS-CCSSCCSCC-----------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTT
T ss_pred ccCCEEECCCC-CccccCCCC-----------CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhC
Confidence 36788888775 677766541 2678888888876533335567888888888888875444334 3677
Q ss_pred CCCccEEEecccCCCcccCcccccCCCCCccEEecCCCCCccccccc--cCCCCcceEEeecccCccccchhhccccccc
Q 035732 172 PSKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCRWLTFIAAV--QLPSSLKKLQIRRCDNIRTLTAEEGIQCSSG 249 (559)
Q Consensus 172 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 249 (559)
+++|++|++++|. +..+|..+. ++|++|++++|. ++.++.. ..+++|+.|+++++. ++........
T Consensus 101 l~~L~~L~L~~n~-l~~l~~~~~----~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~----- 168 (332)
T 2ft3_A 101 LRKLQKLYISKNH-LVEIPPNLP----SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGA----- 168 (332)
T ss_dssp CTTCCEEECCSSC-CCSCCSSCC----TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTS-----
T ss_pred cCCCCEEECCCCc-CCccCcccc----ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCc-cccCCCCccc-----
Confidence 8888888888876 556665532 678888888774 4444332 445566666666532 2210000000
Q ss_pred cccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccc
Q 035732 250 RRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLK 329 (559)
Q Consensus 250 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 329 (559)
+...+|++|++++ +.++. +|..+ .++|++|++++|.+..
T Consensus 169 --~~~l~L~~L~l~~-n~l~~------------------------------------l~~~~--~~~L~~L~l~~n~i~~ 207 (332)
T 2ft3_A 169 --FDGLKLNYLRISE-AKLTG------------------------------------IPKDL--PETLNELHLDHNKIQA 207 (332)
T ss_dssp --SCSCCCSCCBCCS-SBCSS------------------------------------CCSSS--CSSCSCCBCCSSCCCC
T ss_pred --ccCCccCEEECcC-CCCCc------------------------------------cCccc--cCCCCEEECCCCcCCc
Confidence 0000244444444 22222 22111 1455666666655554
Q ss_pred cccccCCCCCccceeecccccCceecCCCCCCCCCccEEeccccccccccccccccCCCcceEEecC-CCCCCcCCC---
Q 035732 330 ILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEEDG--- 405 (559)
Q Consensus 330 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~--- 405 (559)
..+..+..+++|++|++++|......+..+..+++|+.|++++|. +..+|..+..+++|+.|++++ .++.++...
T Consensus 208 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 286 (332)
T 2ft3_A 208 IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCP 286 (332)
T ss_dssp CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChhhhcCccCCEEECCCCCCCccChhHccc
Confidence 444556666666666666664332222234455567777776664 345666666666777777766 454443211
Q ss_pred -----CCCCCceeeecCccchhhhhhhcccccccCccccEEEEeec
Q 035732 406 -----LPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRC 446 (559)
Q Consensus 406 -----~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~ 446 (559)
...+|+.|++++|+.....+.. ..+..+++|+.+++++|
T Consensus 287 ~~~~~~~~~l~~L~l~~N~~~~~~~~~--~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 287 VGFGVKRAYYNGISLFNNPVPYWEVQP--ATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SSCCSSSCCBSEEECCSSSSCGGGSCG--GGGTTBCCSTTEEC---
T ss_pred cccccccccccceEeecCcccccccCc--ccccccchhhhhhcccc
Confidence 1345666777766622111111 34555555666555554
No 43
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.87 E-value=1.6e-23 Score=221.99 Aligned_cols=434 Identities=12% Similarity=0.093 Sum_probs=263.6
Q ss_pred cCCCccCccEEeecCCCceEeeccCCccCcccceeeecCCcceeecCCCCCCCCCccEEEeccccCccEEeccCchhhhc
Q 035732 12 SVSSLPAFCKLEIDGCKKVLWRSATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHDELLQD 91 (559)
Q Consensus 12 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 91 (559)
.+.++++|++|++++|+....-+... ..|.+.... + ...+...+++|++|+++++ .++. .....+..
T Consensus 68 ~~~~~~~L~~L~L~~~~~~~~~~~~~--~~~~~~~~~-----~--l~~l~~~~~~L~~L~L~~~-~i~~---~~~~~l~~ 134 (592)
T 3ogk_B 68 LSRRFPNLRSLKLKGKPRAAMFNLIP--ENWGGYVTP-----W--VTEISNNLRQLKSVHFRRM-IVSD---LDLDRLAK 134 (592)
T ss_dssp HHHHCTTCSEEEEECSCGGGGGTCSC--TTSCCBCHH-----H--HHHHHHHCTTCCEEEEESC-BCCH---HHHHHHHH
T ss_pred HHHhCCCCeEEEecCCcchhhccccc--ccccccchH-----H--HHHHHhhCCCCCeEEeecc-EecH---HHHHHHHH
Confidence 35679999999999997654211100 011100000 0 0001124899999999988 3433 33333444
Q ss_pred -cCC-CcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcc----cCCCCCCCCccceeeccCCCCc--
Q 035732 92 -ICS-LKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVK----LPQSSFSLSSLREIEIYNCSSL-- 163 (559)
Q Consensus 92 -l~~-L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~----~~~~~~~l~~L~~L~l~~~~~~-- 163 (559)
++. |++|++++|..+.. . .+..+...+++|++|++++|..... ++.....+++|++|++++|...
T Consensus 135 ~~~~~L~~L~L~~~~~~~~---~----~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~ 207 (592)
T 3ogk_B 135 ARADDLETLKLDKCSGFTT---D----GLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKI 207 (592)
T ss_dssp HHGGGCCEEEEESCEEEEH---H----HHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSC
T ss_pred hccccCcEEECcCCCCcCH---H----HHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCcc
Confidence 555 99999999874432 2 2333333449999999999964222 2223457899999999987543
Q ss_pred --cccCC-CCCCCCccEEEecccCCCcccCcccccCCCCCccEEecCCCCCccc----cccccCCCCcceEEeecccCcc
Q 035732 164 --VSFPE-VALPSKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCRWLTF----IAAVQLPSSLKKLQIRRCDNIR 236 (559)
Q Consensus 164 --~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~L~~L~l~~~~~l~ 236 (559)
..++. +..+++|++|++++|. +..++..+ ..+++|++|+++....... ......+++|+.+.+.++. ..
T Consensus 208 ~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~ 283 (592)
T 3ogk_B 208 SPKDLETIARNCRSLVSVKVGDFE-ILELVGFF--KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PN 283 (592)
T ss_dssp CHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHH--HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TT
T ss_pred CHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHH--hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hh
Confidence 22222 4568999999999987 44455433 3458899999986432211 1222567899999888742 22
Q ss_pred ccchhhccccccccccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEcCCCCccchHHhhccCCC
Q 035732 237 TLTAEEGIQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKVESIAERLDNNTS 316 (559)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~ 316 (559)
.++..... + ++|++|++++|. +.. ..+...+ ..+ ++|++|++.++.....++.....+++
T Consensus 284 ~l~~~~~~-------~--~~L~~L~Ls~~~-l~~----~~~~~~~-----~~~-~~L~~L~L~~~~~~~~l~~~~~~~~~ 343 (592)
T 3ogk_B 284 EMPILFPF-------A--AQIRKLDLLYAL-LET----EDHCTLI-----QKC-PNLEVLETRNVIGDRGLEVLAQYCKQ 343 (592)
T ss_dssp TGGGGGGG-------G--GGCCEEEETTCC-CCH----HHHHHHH-----TTC-TTCCEEEEEGGGHHHHHHHHHHHCTT
T ss_pred HHHHHHhh-------c--CCCcEEecCCCc-CCH----HHHHHHH-----HhC-cCCCEEeccCccCHHHHHHHHHhCCC
Confidence 33332221 2 249999999975 442 1111111 334 68999999854323344555678999
Q ss_pred CceEEeee----------cCcccc--ccccCCCCCccceeecccccCceecCCCC-CCCCCccEEeccc---ccccccc-
Q 035732 317 LEKISIKR----------CGTLKI--LPSGLHNLRQLQEISIQICENLVSFPEGG-LPCAKLTRLEIYD---CKRLEAL- 379 (559)
Q Consensus 317 L~~L~l~~----------~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~---~~~~~~~- 379 (559)
|++|++++ |..... +......+++|++|++..+.......... ..+++|+.|++++ |..++..
T Consensus 344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p 423 (592)
T 3ogk_B 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP 423 (592)
T ss_dssp CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCC
T ss_pred CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCch
Confidence 99999995 444431 22334568999999996543322111112 2366899999974 3344442
Q ss_pred -----ccccccCCCcceEEecC---CCCC--CcC-CCCCCCCceeeecCccchhh-hhhhcccccccCccccEEEEeecC
Q 035732 380 -----PKGLHNLTSLQHLTIGG---ALPS--LEE-DGLPTNLQLLNIEGNMEIWK-SMIERGRGFHRFSSLRRLTISRCD 447 (559)
Q Consensus 380 -----~~~l~~l~~L~~L~l~~---~l~~--~~~-~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~l~~L~~L~l~~~~ 447 (559)
+..+..+++|+.|+++. .+.. +.. ...+++|++|++++|. +++ .+.. .+.++++|+.|++++|.
T Consensus 424 ~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~---~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 424 LDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLME---FSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp CHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHH---HHTCCTTCCEEEEESCC
T ss_pred HHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHH---HHhcCcccCeeeccCCC
Confidence 23367789999999954 2322 111 1246899999999998 544 3332 56789999999999985
Q ss_pred CCceeecccccccccccccccccceeecccccccccccc-c-cccCCCcCeEEecC
Q 035732 448 DDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSS-S-IVDLQNLTLLQLWG 501 (559)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~-~~~~~~L~~L~l~~ 501 (559)
.....++. ....+++|+.|++++|. +..... . ...+|.+....+..
T Consensus 500 l~~~~~~~-------~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 500 FSERAIAA-------AVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp CBHHHHHH-------HHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEECC
T ss_pred CcHHHHHH-------HHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEecC
Confidence 32221222 13357899999999987 443321 1 14567777666654
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=3.7e-20 Score=180.84 Aligned_cols=282 Identities=17% Similarity=0.191 Sum_probs=134.8
Q ss_pred CCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccC-CCCCCCCccceeeccCCCCccccC-CCCC
Q 035732 94 SLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLP-QSSFSLSSLREIEIYNCSSLVSFP-EVAL 171 (559)
Q Consensus 94 ~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~ 171 (559)
++++++++++ .++.+|.. .++++++|++++|.. ..++ ..+..+++|++|++++|......| .+..
T Consensus 32 ~l~~l~~~~~-~l~~lp~~-----------~~~~l~~L~L~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (330)
T 1xku_A 32 HLRVVQCSDL-GLEKVPKD-----------LPPDTALLDLQNNKI-TEIKDGDFKNLKNLHTLILINNKISKISPGAFAP 98 (330)
T ss_dssp ETTEEECTTS-CCCSCCCS-----------CCTTCCEEECCSSCC-CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTT
T ss_pred CCeEEEecCC-CccccCcc-----------CCCCCeEEECCCCcC-CEeChhhhccCCCCCEEECCCCcCCeeCHHHhcC
Confidence 5666666663 55555543 125667777777654 3333 356667777777777664433323 3566
Q ss_pred CCCccEEEecccCCCcccCcccccCCCCCccEEecCCCCCccccccc--cCCCCcceEEeecccCccc---cchhhcccc
Q 035732 172 PSKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCRWLTFIAAV--QLPSSLKKLQIRRCDNIRT---LTAEEGIQC 246 (559)
Q Consensus 172 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~---~~~~~~~~~ 246 (559)
+++|++|++++|. ++.+|..+. ++|++|++++|. ++.++.. ..+++|+.|+++++. ++. .+..+..
T Consensus 99 l~~L~~L~Ls~n~-l~~l~~~~~----~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~-- 169 (330)
T 1xku_A 99 LVKLERLYLSKNQ-LKELPEKMP----KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQG-- 169 (330)
T ss_dssp CTTCCEEECCSSC-CSBCCSSCC----TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGG--
T ss_pred CCCCCEEECCCCc-CCccChhhc----ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCc-CCccCcChhhccC--
Confidence 6677777777665 445554422 557777776663 3333221 345556666655532 211 1111110
Q ss_pred ccccccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEcCCCCccchHHhhccCCCCceEEeeecC
Q 035732 247 SSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCG 326 (559)
Q Consensus 247 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 326 (559)
+ ++|++|++++ +.++. ++. .++++|++|++++|......+..+..+++|++|++++|.
T Consensus 170 -----l--~~L~~L~l~~-n~l~~-l~~-------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 227 (330)
T 1xku_A 170 -----M--KKLSYIRIAD-TNITT-IPQ-------------GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227 (330)
T ss_dssp -----C--TTCCEEECCS-SCCCS-CCS-------------SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC
T ss_pred -----C--CCcCEEECCC-Ccccc-CCc-------------cccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 1 1255666555 33332 221 111345555555554433334444455555555555544
Q ss_pred ccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEeccccccccccccccccCCCcceEEecC-CCCCCcCCC
Q 035732 327 TLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEEDG 405 (559)
Q Consensus 327 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~ 405 (559)
+....+..+..++ +|+.|++++|. +..+|..+..+++|++|++++ .++.++...
T Consensus 228 l~~~~~~~~~~l~------------------------~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~ 282 (330)
T 1xku_A 228 ISAVDNGSLANTP------------------------HLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISAIGSND 282 (330)
T ss_dssp CCEECTTTGGGST------------------------TCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSCCCCCCTTS
T ss_pred CceeChhhccCCC------------------------CCCEEECCCCc-CccCChhhccCCCcCEEECCCCcCCccChhh
Confidence 4333333344444 45555555443 224444444455555555544 343332211
Q ss_pred --------CCCCCceeeecCccchhhhhhhcccccccCccccEEEEeec
Q 035732 406 --------LPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRC 446 (559)
Q Consensus 406 --------~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~ 446 (559)
..+.|+.|++++|+.....+.. ..+..+++++.+++++|
T Consensus 283 f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~--~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 283 FCPPGYNTKKASYSGVSLFSNPVQYWEIQP--STFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SSCSSCCTTSCCCSEEECCSSSSCGGGSCG--GGGTTCCCGGGEEC---
T ss_pred cCCcccccccccccceEeecCcccccccCc--cccccccceeEEEeccc
Confidence 1245666666666622211111 24455555555555543
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=3.6e-20 Score=181.00 Aligned_cols=291 Identities=14% Similarity=0.137 Sum_probs=141.0
Q ss_pred CceeEEecccCCCCcccCCCCCCCCccceeeccCCCCccccC-CCCCCCCccEEEecccCCCcccCcccccCCCCCccEE
Q 035732 126 CRLEYLGLTSCHGLVKLPQSSFSLSSLREIEIYNCSSLVSFP-EVALPSKLKKIRISYCGALKSLPEAWMCDTNSSLEIL 204 (559)
Q Consensus 126 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 204 (559)
.+++.++++++.. ..+|..+. ++++.|++++|......+ .+..+++|++|++++|......|..+ ..+++|++|
T Consensus 31 c~l~~l~~~~~~l-~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L 105 (330)
T 1xku_A 31 CHLRVVQCSDLGL-EKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF--APLVKLERL 105 (330)
T ss_dssp EETTEEECTTSCC-CSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT--TTCTTCCEE
T ss_pred CCCeEEEecCCCc-cccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh--cCCCCCCEE
Confidence 3677777777643 56666543 577788887774333222 36677777777777776332223332 344666666
Q ss_pred ecCCCCCccccccccCCCCcceEEeecccCccccchhhccccccccccccCCccEEEEecCCCccccccCCCCCcccccc
Q 035732 205 NIEHCRWLTFIAAVQLPSSLKKLQIRRCDNIRTLTAEEGIQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESL 284 (559)
Q Consensus 205 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l 284 (559)
++++|. ++.++... .++ |++|++++
T Consensus 106 ~Ls~n~-l~~l~~~~-~~~---------------------------------L~~L~l~~-------------------- 130 (330)
T 1xku_A 106 YLSKNQ-LKELPEKM-PKT---------------------------------LQELRVHE-------------------- 130 (330)
T ss_dssp ECCSSC-CSBCCSSC-CTT---------------------------------CCEEECCS--------------------
T ss_pred ECCCCc-CCccChhh-ccc---------------------------------ccEEECCC--------------------
Confidence 666653 32222110 122 44444333
Q ss_pred ccCCCCCCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccc--cccccCCCCCccceeecccccCceecCCCCCCC
Q 035732 285 EVGNLPPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLK--ILPSGLHNLRQLQEISIQICENLVSFPEGGLPC 362 (559)
Q Consensus 285 ~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 362 (559)
|......+..+.++++|++|++++|.... ..+..+.++++|++|++++|. ++.+|....
T Consensus 131 ----------------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~-- 191 (330)
T 1xku_A 131 ----------------NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLP-- 191 (330)
T ss_dssp ----------------SCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCC--
T ss_pred ----------------CcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcccc--
Confidence 22222222333444444444444443321 223334444455555554442 223333222
Q ss_pred CCccEEeccccccccccccccccCCCcceEEecC-CCCCCcC--CCCCCCCceeeecCccchhhhhhhcccccccCcccc
Q 035732 363 AKLTRLEIYDCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEE--DGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLR 439 (559)
Q Consensus 363 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~ 439 (559)
++|+.|++++|......+..+..+++|+.|++++ .+..++. ...+++|++|++++|. +.. ++ ..+..+++|+
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~-lp---~~l~~l~~L~ 266 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVK-VP---GGLADHKYIQ 266 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSS-CC---TTTTTCSSCC
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-Ccc-CC---hhhccCCCcC
Confidence 3555555555543333344455555555555555 4443322 2334556666666665 331 11 2355666666
Q ss_pred EEEEeecCCCceeecccccccccccccccccceeecccccccc--ccccccccCCCcCeEEecCC
Q 035732 440 RLTISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLE--RLSSSIVDLQNLTLLQLWGC 502 (559)
Q Consensus 440 ~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~--~~~~~~~~~~~L~~L~l~~c 502 (559)
.|++++|. +..++...-.........++|+.|++++++... ..|..+..+++++.++++++
T Consensus 267 ~L~l~~N~--i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 267 VVYLHNNN--ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp EEECCSSC--CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred EEECCCCc--CCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 66666653 333333220000001123677788888865322 23445677788888888774
No 46
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.85 E-value=4.4e-23 Score=218.77 Aligned_cols=187 Identities=18% Similarity=0.184 Sum_probs=108.8
Q ss_pred ccccCCCCC--ccCCCccCccEEeecCCCceEeeccCCccCcccceeeecCCcceeecCCCCCCCCCccEEEeccccCcc
Q 035732 2 VIKGCEELS--VSVSSLPAFCKLEIDGCKKVLWRSATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELEIKNIKNET 79 (559)
Q Consensus 2 ~~~~c~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~ 79 (559)
++++|.... ..+.++++|+.|++++|+........ ...|..... .+ ...++..+++|++|+++++. ++
T Consensus 49 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~--~~~~~~~~~-----~~--l~~l~~~~~~L~~L~L~~~~-~~ 118 (594)
T 2p1m_B 49 FIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLV--PDGWGGYVY-----PW--IEAMSSSYTWLEEIRLKRMV-VT 118 (594)
T ss_dssp EESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGGTCS--CTTSCCBCH-----HH--HHHHHHHCTTCCEEEEESCB-CC
T ss_pred eeccccccCHHHHHhhCCCceEEeccCCCchhhcccc--cccccchhh-----HH--HHHHHHhCCCCCeEEeeCcE-Ec
Confidence 345665543 23667899999999999765422110 011110000 00 00011247899999999874 43
Q ss_pred EEeccCchhhh-ccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCc----ccCCCCCCCCccce
Q 035732 80 YIWKSHDELLQ-DICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLV----KLPQSSFSLSSLRE 154 (559)
Q Consensus 80 ~~~~~~~~~~~-~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~----~~~~~~~~l~~L~~ 154 (559)
. .....+. .+++|++|++++|..++.. .+..+...+++|++|++++|.... .++.....+++|++
T Consensus 119 ~---~~~~~l~~~~~~L~~L~L~~~~~~~~~-------~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~ 188 (594)
T 2p1m_B 119 D---DCLELIAKSFKNFKVLVLSSCEGFSTD-------GLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVS 188 (594)
T ss_dssp H---HHHHHHHHHCTTCCEEEEESCEEEEHH-------HHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCE
T ss_pred H---HHHHHHHHhCCCCcEEeCCCcCCCCHH-------HHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcE
Confidence 3 3333333 6899999999998665541 222222233999999999986311 13333446789999
Q ss_pred eeccCCC-Ccc--ccCC-CCCCCCccEEEecccCCCcccCcccccCCCCCccEEecCCCC
Q 035732 155 IEIYNCS-SLV--SFPE-VALPSKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCR 210 (559)
Q Consensus 155 L~l~~~~-~~~--~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 210 (559)
|++++|. ... .++. ...+++|++|++++|..+..++..+ ..+++|++|++..+.
T Consensus 189 L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~--~~~~~L~~L~l~~~~ 246 (594)
T 2p1m_B 189 LNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLL--QRAPQLEELGTGGYT 246 (594)
T ss_dssp EECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHH--HHCTTCSEEECSBCC
T ss_pred EEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHH--hcCCcceEccccccc
Confidence 9998875 111 1111 2346888888888885555544332 234778888876653
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=3.1e-20 Score=181.54 Aligned_cols=262 Identities=19% Similarity=0.201 Sum_probs=145.7
Q ss_pred CCccEEEeccccCccEEeccCchhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccCC
Q 035732 65 PKLEELEIKNIKNETYIWKSHDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLPQ 144 (559)
Q Consensus 65 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~~ 144 (559)
++|+.|++.++ .++. +++..+..+++|++|++++| .++.+.+. .+..+ ++|++|++++|.. ..+|.
T Consensus 54 ~~l~~L~l~~n-~i~~---~~~~~~~~l~~L~~L~L~~n-~l~~~~~~----~~~~l----~~L~~L~L~~n~l-~~l~~ 119 (332)
T 2ft3_A 54 PDTTLLDLQNN-DISE---LRKDDFKGLQHLYALVLVNN-KISKIHEK----AFSPL----RKLQKLYISKNHL-VEIPP 119 (332)
T ss_dssp TTCCEEECCSS-CCCE---ECTTTTTTCTTCCEEECCSS-CCCEECGG----GSTTC----TTCCEEECCSSCC-CSCCS
T ss_pred CCCeEEECCCC-cCCc---cCHhHhhCCCCCcEEECCCC-ccCccCHh----HhhCc----CCCCEEECCCCcC-CccCc
Confidence 56777777766 3444 55555667777777777765 55555443 34445 7777777777654 45555
Q ss_pred CCCCCCccceeeccCCCCccccCC--CCCCCCccEEEecccCCCc--ccCcccccCCCCCccEEecCCCCCccccccccC
Q 035732 145 SSFSLSSLREIEIYNCSSLVSFPE--VALPSKLKKIRISYCGALK--SLPEAWMCDTNSSLEILNIEHCRWLTFIAAVQL 220 (559)
Q Consensus 145 ~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 220 (559)
.+. ++|++|++++|.. ..++. +..+++|++|++++|.... ..+..+ .. .+|++|++++|. ++.++.. .
T Consensus 120 ~~~--~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~~-l~L~~L~l~~n~-l~~l~~~-~ 191 (332)
T 2ft3_A 120 NLP--SSLVELRIHDNRI-RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF--DG-LKLNYLRISEAK-LTGIPKD-L 191 (332)
T ss_dssp SCC--TTCCEEECCSSCC-CCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSS--CS-CCCSCCBCCSSB-CSSCCSS-S
T ss_pred ccc--ccCCEEECCCCcc-CccCHhHhCCCccCCEEECCCCccccCCCCcccc--cC-CccCEEECcCCC-CCccCcc-c
Confidence 443 6677777776643 33332 5566677777776665321 122221 11 155666666553 3222211 1
Q ss_pred CCCcceEEeecccCccccchhhccccccccccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEcC
Q 035732 221 PSSLKKLQIRRCDNIRTLTAEEGIQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYG 300 (559)
Q Consensus 221 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~ 300 (559)
.++ |++|++++ +.++. .+. ..+ ..+ ++|++|++++
T Consensus 192 ~~~---------------------------------L~~L~l~~-n~i~~-~~~----~~l-----~~l-~~L~~L~L~~ 226 (332)
T 2ft3_A 192 PET---------------------------------LNELHLDH-NKIQA-IEL----EDL-----LRY-SKLYRLGLGH 226 (332)
T ss_dssp CSS---------------------------------CSCCBCCS-SCCCC-CCT----TSS-----TTC-TTCSCCBCCS
T ss_pred cCC---------------------------------CCEEECCC-CcCCc-cCH----HHh-----cCC-CCCCEEECCC
Confidence 122 55555555 33333 111 111 222 4677777777
Q ss_pred CCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCC-CCC------CCCccEEecccc
Q 035732 301 CSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEG-GLP------CAKLTRLEIYDC 373 (559)
Q Consensus 301 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~------~~~L~~L~l~~~ 373 (559)
|......+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.. +.++.. +.. .+.|+.+++++|
T Consensus 227 N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~~~~~~~l~~L~l~~N 304 (332)
T 2ft3_A 227 NQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI-TKVGVNDFCPVGFGVKRAYYNGISLFNN 304 (332)
T ss_dssp SCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCC-CBCCTTSSSCSSCCSSSCCBSEEECCSS
T ss_pred CcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCC-CccChhHccccccccccccccceEeecC
Confidence 7655555556777778888888777654 5666677777888888877743 333322 111 245777777777
Q ss_pred ccc--cccccccccCCCcceEEec
Q 035732 374 KRL--EALPKGLHNLTSLQHLTIG 395 (559)
Q Consensus 374 ~~~--~~~~~~l~~l~~L~~L~l~ 395 (559)
+.. ...|..+..+++|+.++++
T Consensus 305 ~~~~~~~~~~~~~~l~~L~~l~l~ 328 (332)
T 2ft3_A 305 PVPYWEVQPATFRCVTDRLAIQFG 328 (332)
T ss_dssp SSCGGGSCGGGGTTBCCSTTEEC-
T ss_pred cccccccCcccccccchhhhhhcc
Confidence 643 2334455555555555553
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=3.5e-21 Score=186.24 Aligned_cols=248 Identities=16% Similarity=0.169 Sum_probs=178.3
Q ss_pred ccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEcC-CCCccchHHhhccCCCCceEEeeecCccccccccC
Q 035732 257 LEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYG-CSKVESIAERLDNNTSLEKISIKRCGTLKILPSGL 335 (559)
Q Consensus 257 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 335 (559)
++.|++++ +.+... ..+|..+.. + ++|++|++++ +.....+|..+.++++|++|++++|.+...+|..+
T Consensus 52 l~~L~L~~-~~l~~~---~~~~~~l~~-----l-~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~ 121 (313)
T 1ogq_A 52 VNNLDLSG-LNLPKP---YPIPSSLAN-----L-PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121 (313)
T ss_dssp EEEEEEEC-CCCSSC---EECCGGGGG-----C-TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG
T ss_pred EEEEECCC-CCccCC---cccChhHhC-----C-CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH
Confidence 77777777 334310 033444433 3 5788888884 66566677788888888888888888777778888
Q ss_pred CCCCccceeecccccCceecCCCCCCCCCccEEeccccccccccccccccCC-CcceEEecC-CCC-CCcC-CCCCCCCc
Q 035732 336 HNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALPKGLHNLT-SLQHLTIGG-ALP-SLEE-DGLPTNLQ 411 (559)
Q Consensus 336 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~-~l~-~~~~-~~~~~~L~ 411 (559)
..+++|++|++++|.....+|..+..+++|++|++++|.....+|..+..++ +|+.|++++ .+. .++. ...+. |+
T Consensus 122 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~ 200 (313)
T 1ogq_A 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LA 200 (313)
T ss_dssp GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CS
T ss_pred hCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-cc
Confidence 8888888888888865546676677778888888888876667788888887 888888887 444 2222 23333 88
Q ss_pred eeeecCccchhhhhhhcccccccCccccEEEEeecCCCceeecccccccccccccccccceeeccccccccccccccccC
Q 035732 412 LLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSSSIVDL 491 (559)
Q Consensus 412 ~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 491 (559)
+|++++|. +....+ ..+..+++|+.|++++|. +..... .+..+++|++|++++|.....+|..+..+
T Consensus 201 ~L~Ls~N~-l~~~~~---~~~~~l~~L~~L~L~~N~--l~~~~~-------~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 267 (313)
T 1ogq_A 201 FVDLSRNM-LEGDAS---VLFGSDKNTQKIHLAKNS--LAFDLG-------KVGLSKNLNGLDLRNNRIYGTLPQGLTQL 267 (313)
T ss_dssp EEECCSSE-EEECCG---GGCCTTSCCSEEECCSSE--ECCBGG-------GCCCCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred EEECcCCc-ccCcCC---HHHhcCCCCCEEECCCCc--eeeecC-------cccccCCCCEEECcCCcccCcCChHHhcC
Confidence 99999887 443333 367888999999998873 221111 14556899999999966544788888889
Q ss_pred CCcCeEEecCCCCCc-ccCCCCCCCCceEEEecCChhhh
Q 035732 492 QNLTLLQLWGCPKLK-YFPKKGLPSSLLELDIVGCPLIE 529 (559)
Q Consensus 492 ~~L~~L~l~~c~~l~-~l~~~~~~~~L~~L~l~~c~~l~ 529 (559)
++|++|++++| .++ .+|...-+++|+.+++.+|+.+.
T Consensus 268 ~~L~~L~Ls~N-~l~~~ip~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 268 KFLHSLNVSFN-NLCGEIPQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp TTCCEEECCSS-EEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred cCCCEEECcCC-cccccCCCCccccccChHHhcCCCCcc
Confidence 99999999995 555 67776556789999999887553
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=6.5e-20 Score=178.43 Aligned_cols=105 Identities=20% Similarity=0.371 Sum_probs=91.0
Q ss_pred CCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEec
Q 035732 291 PSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEI 370 (559)
Q Consensus 291 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 370 (559)
++|++|++++|... .++..+..+++|++|++++|...+.+|..+..+++|++|++++|.....+|..+..+++|+.|++
T Consensus 206 ~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 284 (328)
T 4fcg_A 206 QNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284 (328)
T ss_dssp TTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEEC
T ss_pred CCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeC
Confidence 57888888887654 45557888999999999999888888888999999999999999888888888888889999999
Q ss_pred cccccccccccccccCCCcceEEecC
Q 035732 371 YDCKRLEALPKGLHNLTSLQHLTIGG 396 (559)
Q Consensus 371 ~~~~~~~~~~~~l~~l~~L~~L~l~~ 396 (559)
++|...+.+|..+.++++|+.+++..
T Consensus 285 ~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 285 RGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp TTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CCCCchhhccHHHhhccCceEEeCCH
Confidence 99999999999999999999998866
No 50
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=2e-23 Score=214.29 Aligned_cols=309 Identities=20% Similarity=0.189 Sum_probs=166.7
Q ss_pred CCCccEEEeccccCccEEeccCchhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccC
Q 035732 64 IPKLEELEIKNIKNETYIWKSHDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLP 143 (559)
Q Consensus 64 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~ 143 (559)
.++|++|+++++ +++.. .....+..+++|++|++++| .++......++..+..+ ++|++|++++|......+
T Consensus 2 ~~~l~~L~Ls~~-~l~~~--~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~----~~L~~L~Ls~n~l~~~~~ 73 (461)
T 1z7x_W 2 SLDIQSLDIQCE-ELSDA--RWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVN----PALAELNLRSNELGDVGV 73 (461)
T ss_dssp CEEEEEEEEESC-CCCHH--HHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTC----TTCCEEECTTCCCHHHHH
T ss_pred Cccceehhhhhc-ccCch--hHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhC----CCcCEEeCCCCcCChHHH
Confidence 467889999877 34430 22334678999999999998 56654444444556666 999999999986522222
Q ss_pred CC-CCCCC----ccceeeccCCCCcc----ccC-CCCCCCCccEEEecccCCCcccC-ccc---ccCCCCCccEEecCCC
Q 035732 144 QS-SFSLS----SLREIEIYNCSSLV----SFP-EVALPSKLKKIRISYCGALKSLP-EAW---MCDTNSSLEILNIEHC 209 (559)
Q Consensus 144 ~~-~~~l~----~L~~L~l~~~~~~~----~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~---~~~~~~~L~~L~l~~~ 209 (559)
.. ...++ +|++|++++|.... .++ .+..+++|++|++++|. +.... ..+ .....++|++|++++|
T Consensus 74 ~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n 152 (461)
T 1z7x_W 74 HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYC 152 (461)
T ss_dssp HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCC
Confidence 11 22333 79999999986432 233 36788899999999987 43221 111 0122357999999988
Q ss_pred CCcccc-----ccc-cCCCCcceEEeecccCccccchhhcccccccccc--ccCCccEEEEecCCCccccccCCCCCccc
Q 035732 210 RWLTFI-----AAV-QLPSSLKKLQIRRCDNIRTLTAEEGIQCSSGRRY--TSSLLEELEIWDCPSLTCIFSKNELPATL 281 (559)
Q Consensus 210 ~~~~~~-----~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 281 (559)
. ++.. +.. ..+++|+.|+++++. +.......... .+ ..++|++|++++| .++. .....++..+
T Consensus 153 ~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~-----~l~~~~~~L~~L~L~~n-~l~~-~~~~~l~~~l 223 (461)
T 1z7x_W 153 S-LSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQ-----GLKDSPCQLEALKLESC-GVTS-DNCRDLCGIV 223 (461)
T ss_dssp C-CBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHH-----HHHHSCCCCCEEECTTS-CCBT-THHHHHHHHH
T ss_pred C-CCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHH-----HHhcCCCCceEEEccCC-CCcH-HHHHHHHHHH
Confidence 5 3331 111 335688888888754 33221110000 00 0123777777763 3332 1000112222
Q ss_pred cccccCCCCCCccEEEEcCCCCccch-----HHhhccCCCCceEEeeecCcccc----ccccCCCCCccceeecccccCc
Q 035732 282 ESLEVGNLPPSLKSLYVYGCSKVESI-----AERLDNNTSLEKISIKRCGTLKI----LPSGLHNLRQLQEISIQICENL 352 (559)
Q Consensus 282 ~~l~~~~l~~~L~~L~l~~~~~~~~~-----~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~ 352 (559)
.. + ++|++|++++|...... +.....+++|++|++++|.+... ++..+..+++|++|++++|...
T Consensus 224 ~~-----~-~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 224 AS-----K-ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp HH-----C-TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred Hh-----C-CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence 11 2 46667777666433221 11222466677777766654432 3444555666666666666432
Q ss_pred ee----cCCC-CCCCCCccEEeccccccccc----cccccccCCCcceEEecC
Q 035732 353 VS----FPEG-GLPCAKLTRLEIYDCKRLEA----LPKGLHNLTSLQHLTIGG 396 (559)
Q Consensus 353 ~~----~~~~-~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~ 396 (559)
.. +... ....++|+.|++++|..... ++..+..+++|++|++++
T Consensus 298 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 350 (461)
T 1z7x_W 298 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN 350 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCS
T ss_pred hHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccC
Confidence 11 1110 11223666666666653322 233444555555555555
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=2.3e-20 Score=181.53 Aligned_cols=203 Identities=22% Similarity=0.317 Sum_probs=103.3
Q ss_pred CCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEec
Q 035732 291 PSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEI 370 (559)
Q Consensus 291 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 370 (559)
++|++|++++|... .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.....+|..+.. .
T Consensus 104 ~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~------~-- 173 (328)
T 4fcg_A 104 SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAS------T-- 173 (328)
T ss_dssp TTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE------E--
T ss_pred CCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhh------c--
Confidence 35555555554433 44444555555555555555443 34444555555555555555444444433221 0
Q ss_pred cccccccccccccccCCCcceEEecC-CCCCCcC-CCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCC
Q 035732 371 YDCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEE-DGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDD 448 (559)
Q Consensus 371 ~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~ 448 (559)
.++..+..+++|++|++++ .+..++. ...+++|++|++++|. +... + ..+..+++|+.|++++|..
T Consensus 174 -------~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l-~---~~l~~l~~L~~L~Ls~n~~ 241 (328)
T 4fcg_A 174 -------DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSAL-G---PAIHHLPKLEELDLRGCTA 241 (328)
T ss_dssp -------C-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCC-C---GGGGGCTTCCEEECTTCTT
T ss_pred -------cchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcC-c---hhhccCCCCCEEECcCCcc
Confidence 0000012255555555555 4444432 3334555555555555 2221 1 1355566666666666532
Q ss_pred CceeecccccccccccccccccceeeccccccccccccccccCCCcCeEEecCCCCCcccCCC-CCCCCceEEEec
Q 035732 449 DMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSSSIVDLQNLTLLQLWGCPKLKYFPKK-GLPSSLLELDIV 523 (559)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~ 523 (559)
...++. .+..+++|+.|++++|+....+|..+..+++|++|++++|+.+..+|.. +-+++|+.+++.
T Consensus 242 -~~~~p~-------~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 242 -LRNYPP-------IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp -CCBCCC-------CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred -hhhhHH-------HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 222222 2455667777777776666666666666777777777776666666662 224566666665
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=2.2e-20 Score=180.67 Aligned_cols=201 Identities=17% Similarity=0.150 Sum_probs=127.9
Q ss_pred CCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCC-CccEEe
Q 035732 291 PSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCA-KLTRLE 369 (559)
Q Consensus 291 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~ 369 (559)
++|++|++++|......|..+.++++|++|++++|.+...+|..+..+++|++|++++|.....+|..+..++ +|+.|+
T Consensus 101 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~ 180 (313)
T 1ogq_A 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180 (313)
T ss_dssp TTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEE
T ss_pred CCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEE
Confidence 4667777766665555666666777777777777766656666666777777777777655445665555554 677777
Q ss_pred ccccccccccccccccCCCcceEEecC-CCCCC-c-CCCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeec
Q 035732 370 IYDCKRLEALPKGLHNLTSLQHLTIGG-ALPSL-E-EDGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRC 446 (559)
Q Consensus 370 l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~-~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~ 446 (559)
+++|.....+|..+..++ |+.|++++ .+... + ....+++|++|++++|. +....+ .+..+++|++|++++|
T Consensus 181 L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~----~~~~l~~L~~L~Ls~N 254 (313)
T 1ogq_A 181 ISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS-LAFDLG----KVGLSKNLNGLDLRNN 254 (313)
T ss_dssp CCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE-ECCBGG----GCCCCTTCCEEECCSS
T ss_pred CcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc-eeeecC----cccccCCCCEEECcCC
Confidence 777765556666666665 77777776 44322 1 14456777777777776 332222 2556777888887776
Q ss_pred CCCce-eecccccccccccccccccceeeccccccccccccccccCCCcCeEEecCCCCCcc
Q 035732 447 DDDMV-SFPLENKRLGTALPLLASLTSLGISRFPNLERLSSSIVDLQNLTLLQLWGCPKLKY 507 (559)
Q Consensus 447 ~~~~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ 507 (559)
. +. .++. .+..+++|+.|++++|.....+|.. ..+++|+.+++.+++.+..
T Consensus 255 ~--l~~~~p~-------~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 255 R--IYGTLPQ-------GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp C--CEECCCG-------GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred c--ccCcCCh-------HHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 4 22 2332 2556678888888885544456654 6677888888888665544
No 53
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.83 E-value=1.2e-21 Score=207.78 Aligned_cols=400 Identities=15% Similarity=0.153 Sum_probs=201.7
Q ss_pred CCCCccEEEeccccCccEEeccC-----------chhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEE
Q 035732 63 RIPKLEELEIKNIKNETYIWKSH-----------DELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYL 131 (559)
Q Consensus 63 ~l~~L~~L~l~~~~~~~~~~~~~-----------~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L 131 (559)
.+++|++|++.++.....+...+ ......+++|++|++++|. ++.. .+..+...+++|++|
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~-------~~~~l~~~~~~L~~L 135 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDD-------CLELIAKSFKNFKVL 135 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHH-------HHHHHHHHCTTCCEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHH-------HHHHHHHhCCCCcEE
Confidence 46777777777765443311010 1123456777777777763 3332 122222223777777
Q ss_pred ecccCCCCcc--cCCCCCCCCccceeeccCCCCcc----ccCC-CCCCCCccEEEecccC-CCcccCcccccCCCCCccE
Q 035732 132 GLTSCHGLVK--LPQSSFSLSSLREIEIYNCSSLV----SFPE-VALPSKLKKIRISYCG-ALKSLPEAWMCDTNSSLEI 203 (559)
Q Consensus 132 ~l~~~~~l~~--~~~~~~~l~~L~~L~l~~~~~~~----~~~~-~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~ 203 (559)
++++|..+.. ++.....+++|++|++++|.... .++. ...+++|++|++++|. .+...........+++|++
T Consensus 136 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~ 215 (594)
T 2p1m_B 136 VLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKS 215 (594)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCE
T ss_pred eCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcE
Confidence 7777743332 33334467777777777764211 1222 2245677777777765 1110000000012366777
Q ss_pred EecCCCCCccccccc-cCCCCcceEEeecccC------ccccchhhccccccccccccCCccEEE-EecCCCccccccCC
Q 035732 204 LNIEHCRWLTFIAAV-QLPSSLKKLQIRRCDN------IRTLTAEEGIQCSSGRRYTSSLLEELE-IWDCPSLTCIFSKN 275 (559)
Q Consensus 204 L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~------l~~~~~~~~~~~~~~~~~~~~~L~~L~-l~~~~~l~~~~~~~ 275 (559)
|++++|..++.++.. ..+++|+.|.+..+.. +..++..... . ++|+.|. +.+ ....
T Consensus 216 L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~-------~--~~L~~Ls~~~~-------~~~~ 279 (594)
T 2p1m_B 216 LKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSG-------C--KELRCLSGFWD-------AVPA 279 (594)
T ss_dssp EECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHT-------C--TTCCEEECCBT-------CCGG
T ss_pred EecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhc-------C--CCcccccCCcc-------cchh
Confidence 777776444443332 4456777777655432 1111111111 1 1244441 111 1111
Q ss_pred CCCccccccccCCCCCCccEEEEcCCCCccc-hHHhhccCCCCceEEeeecCccc-cccccCCCCCccceeecccc----
Q 035732 276 ELPATLESLEVGNLPPSLKSLYVYGCSKVES-IAERLDNNTSLEKISIKRCGTLK-ILPSGLHNLRQLQEISIQIC---- 349 (559)
Q Consensus 276 ~~~~~~~~l~~~~l~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~---- 349 (559)
.++..+.. + ++|++|++++|..... +...+.++++|++|++.+| ... .++.....+++|++|++.++
T Consensus 280 ~l~~~~~~-----~-~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g 352 (594)
T 2p1m_B 280 YLPAVYSV-----C-SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFV 352 (594)
T ss_dssp GGGGGHHH-----H-TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTC
T ss_pred hHHHHHHh-----h-CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccc
Confidence 12211111 2 5788888888773322 2334567888888888877 222 22222345788888888442
Q ss_pred ----cCcee--cCCCCCCCCCccEEecccccccccccccc-ccCCCcceEEec--C-----CCCCCcC-------CCCCC
Q 035732 350 ----ENLVS--FPEGGLPCAKLTRLEIYDCKRLEALPKGL-HNLTSLQHLTIG--G-----ALPSLEE-------DGLPT 408 (559)
Q Consensus 350 ----~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~--~-----~l~~~~~-------~~~~~ 408 (559)
..++. +......+++|+.|.+..+.........+ ..+++|+.|+++ + .++..+. ...++
T Consensus 353 ~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~ 432 (594)
T 2p1m_B 353 MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCK 432 (594)
T ss_dssp SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCT
T ss_pred cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCC
Confidence 22211 00011125678888665544322222233 357788888887 2 3332211 22456
Q ss_pred CCceeeecCccchhhhhhhcccccccCccccEEEEeecCCCceeecccccccccccccccccceeeccccccccccc-cc
Q 035732 409 NLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLS-SS 487 (559)
Q Consensus 409 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~ 487 (559)
+|++|++++ . +++.... .....+++|+.|++++|......+.. ....+++|++|++++|+.-.... ..
T Consensus 433 ~L~~L~L~~-~-l~~~~~~--~l~~~~~~L~~L~L~~~~i~~~~~~~-------l~~~~~~L~~L~L~~n~~~~~~~~~~ 501 (594)
T 2p1m_B 433 DLRRLSLSG-L-LTDKVFE--YIGTYAKKMEMLSVAFAGDSDLGMHH-------VLSGCDSLRKLEIRDCPFGDKALLAN 501 (594)
T ss_dssp TCCEEECCS-S-CCHHHHH--HHHHHCTTCCEEEEESCCSSHHHHHH-------HHHHCTTCCEEEEESCSCCHHHHHHT
T ss_pred CccEEeecC-c-ccHHHHH--HHHHhchhccEeeccCCCCcHHHHHH-------HHhcCCCcCEEECcCCCCcHHHHHHH
Confidence 788888866 2 3333322 12224778888888876421111111 11346788888888876522211 12
Q ss_pred cccCCCcCeEEecCCCC
Q 035732 488 IVDLQNLTLLQLWGCPK 504 (559)
Q Consensus 488 ~~~~~~L~~L~l~~c~~ 504 (559)
...+++|++|++++|+.
T Consensus 502 ~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 502 ASKLETMRSLWMSSCSV 518 (594)
T ss_dssp GGGGGGSSEEEEESSCC
T ss_pred HHhCCCCCEEeeeCCCC
Confidence 34577888888888754
No 54
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.82 E-value=1.9e-22 Score=206.95 Aligned_cols=377 Identities=18% Similarity=0.127 Sum_probs=200.1
Q ss_pred cCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCc----ccCCCCCCCCccceeeccCCCCccccC
Q 035732 92 ICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLV----KLPQSSFSLSSLREIEIYNCSSLVSFP 167 (559)
Q Consensus 92 l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~----~~~~~~~~l~~L~~L~l~~~~~~~~~~ 167 (559)
.++|++|+++++ .++.... ...+..+ ++|++|++++|.... .++..+..+++|++|++++|......+
T Consensus 2 ~~~l~~L~Ls~~-~l~~~~~---~~~~~~~----~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 73 (461)
T 1z7x_W 2 SLDIQSLDIQCE-ELSDARW---AELLPLL----QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGV 73 (461)
T ss_dssp CEEEEEEEEESC-CCCHHHH---HHHHHHH----TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHH
T ss_pred Cccceehhhhhc-ccCchhH---HHHHhhc----CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHH
Confidence 367899999875 5655332 2335555 999999999987532 345667778999999999875332111
Q ss_pred -C-CCCCC----CccEEEecccCCCc----ccCcccccCCCCCccEEecCCCCCcccccc-----c--cCCCCcceEEee
Q 035732 168 -E-VALPS----KLKKIRISYCGALK----SLPEAWMCDTNSSLEILNIEHCRWLTFIAA-----V--QLPSSLKKLQIR 230 (559)
Q Consensus 168 -~-~~~~~----~L~~L~l~~~~~~~----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-----~--~~~~~L~~L~l~ 230 (559)
. ...++ +|++|++++|.... .++..+ ..+++|++|++++|. ++.... . ...++|++|+++
T Consensus 74 ~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l--~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~ 150 (461)
T 1z7x_W 74 HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTL--RTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLE 150 (461)
T ss_dssp HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHT--TSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHH--ccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECC
Confidence 1 11222 68888888887321 223332 345778888888775 332111 0 113356666665
Q ss_pred cccCccccchhhccccccccccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEcCCCCccchHHh
Q 035732 231 RCDNIRTLTAEEGIQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKVESIAER 310 (559)
Q Consensus 231 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~~~~~~~~~~~ 310 (559)
+|. ++.... ..++..+. .+ ++|++|++++|......+..
T Consensus 151 ~n~-l~~~~~----------------------------------~~l~~~l~-----~~-~~L~~L~L~~n~i~~~~~~~ 189 (461)
T 1z7x_W 151 YCS-LSAASC----------------------------------EPLASVLR-----AK-PDFKELTVSNNDINEAGVRV 189 (461)
T ss_dssp TSC-CBGGGH----------------------------------HHHHHHHH-----HC-TTCCEEECCSSBCHHHHHHH
T ss_pred CCC-CCHHHH----------------------------------HHHHHHHh-----hC-CCCCEEECcCCCcchHHHHH
Confidence 542 221110 00011111 11 34555555554432221111
Q ss_pred hc-----cCCCCceEEeeecCcccc----ccccCCCCCccceeecccccCcee----cCC-CCCCCCCccEEeccccccc
Q 035732 311 LD-----NNTSLEKISIKRCGTLKI----LPSGLHNLRQLQEISIQICENLVS----FPE-GGLPCAKLTRLEIYDCKRL 376 (559)
Q Consensus 311 ~~-----~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~-~~~~~~~L~~L~l~~~~~~ 376 (559)
+. ..++|++|++++|.+... ++..+..+++|++|++++|..... +.. ....+++|+.|++++|...
T Consensus 190 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~ 269 (461)
T 1z7x_W 190 LCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT 269 (461)
T ss_dssp HHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred HHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 11 234555555555544331 233344455555555555532110 111 1112446666666666432
Q ss_pred cc----cccccccCCCcceEEecC-CCCC-----CcC--CCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEe
Q 035732 377 EA----LPKGLHNLTSLQHLTIGG-ALPS-----LEE--DGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTIS 444 (559)
Q Consensus 377 ~~----~~~~l~~l~~L~~L~l~~-~l~~-----~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~ 444 (559)
.. ++..+..+++|++|++++ .+.. +.. ....++|++|++++|..........+..+..+++|++|+++
T Consensus 270 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 349 (461)
T 1z7x_W 270 AKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQIS 349 (461)
T ss_dssp HHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEcc
Confidence 21 444555566677776666 3322 111 11235888888888873332211122356778999999999
Q ss_pred ecCCCceeecccccccccccc-cccccceeecccccccc-----ccccccccCCCcCeEEecCCCCCcccCC-------C
Q 035732 445 RCDDDMVSFPLENKRLGTALP-LLASLTSLGISRFPNLE-----RLSSSIVDLQNLTLLQLWGCPKLKYFPK-------K 511 (559)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~l~-----~~~~~~~~~~~L~~L~l~~c~~l~~l~~-------~ 511 (559)
+|.. ....... +...+. ..++|+.|++++|. +. .++..+..+++|++|++++| .++.... .
T Consensus 350 ~n~i--~~~~~~~--l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i~~~~~~~l~~~l~ 423 (461)
T 1z7x_W 350 NNRL--EDAGVRE--LCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLVESVR 423 (461)
T ss_dssp SSBC--HHHHHHH--HHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHT
T ss_pred CCcc--ccccHHH--HHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCC-CCCHHHHHHHHHHhc
Confidence 8742 2111100 000121 14699999999965 44 57777778999999999995 5654211 0
Q ss_pred CCCCCceEEEecCCh
Q 035732 512 GLPSSLLELDIVGCP 526 (559)
Q Consensus 512 ~~~~~L~~L~l~~c~ 526 (559)
....+|+.|++.++.
T Consensus 424 ~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 424 QPGCLLEQLVLYDIY 438 (461)
T ss_dssp STTCCCCEEECTTCC
T ss_pred cCCcchhheeecccc
Confidence 122367777776654
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=5e-19 Score=180.63 Aligned_cols=222 Identities=18% Similarity=0.134 Sum_probs=146.8
Q ss_pred CCCCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCC-CCCCCCCccE
Q 035732 289 LPPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPE-GGLPCAKLTR 367 (559)
Q Consensus 289 l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~ 367 (559)
+|+++++|++++|......+..+.++++|++|++++|.+....+..+.++++|++|++++|.. +.++. .+..+++|+.
T Consensus 73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL-TVIPSGAFEYLSKLRE 151 (452)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-SBCCTTTSSSCTTCCE
T ss_pred CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC-CccChhhhcccCCCCE
Confidence 345777777777766555566777777888888877766665566677777888888877743 44443 3555677888
Q ss_pred EeccccccccccccccccCCCcceEEecC--CCCCCcC--CCCCCCCceeeecCccchhhhhhhcccccccCccccEEEE
Q 035732 368 LEIYDCKRLEALPKGLHNLTSLQHLTIGG--ALPSLEE--DGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTI 443 (559)
Q Consensus 368 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~--~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l 443 (559)
|++++|......+..+..+++|+.|++++ .+..++. ...+++|++|++++|. +... ..+..+++|+.|++
T Consensus 152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~-----~~~~~l~~L~~L~L 225 (452)
T 3zyi_A 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDM-----PNLTPLVGLEELEM 225 (452)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSC-----CCCTTCTTCCEEEC
T ss_pred EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-cccc-----ccccccccccEEEC
Confidence 88877764433334667777788887776 4444443 4456777888887776 4322 23667777888888
Q ss_pred eecCCCceeecccccccccccccccccceeeccccccccccccccccCCCcCeEEecCCCCCcccCCCCC--CCCceEEE
Q 035732 444 SRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSSSIVDLQNLTLLQLWGCPKLKYFPKKGL--PSSLLELD 521 (559)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~ 521 (559)
++|. +..+.... +..+++|+.|++++|..-...+..+..+++|++|++++ ++++.++...+ +++|+.|+
T Consensus 226 s~N~--l~~~~~~~------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~ 296 (452)
T 3zyi_A 226 SGNH--FPEIRPGS------FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH-NNLSSLPHDLFTPLRYLVELH 296 (452)
T ss_dssp TTSC--CSEECGGG------GTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCSCCCTTSSTTCTTCCEEE
T ss_pred cCCc--CcccCccc------ccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCC-CcCCccChHHhccccCCCEEE
Confidence 7763 33443332 66777888888888443333344566778888888887 46777776433 56788888
Q ss_pred ecCCh
Q 035732 522 IVGCP 526 (559)
Q Consensus 522 l~~c~ 526 (559)
+++||
T Consensus 297 L~~Np 301 (452)
T 3zyi_A 297 LHHNP 301 (452)
T ss_dssp CCSSC
T ss_pred ccCCC
Confidence 87775
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=7.3e-19 Score=178.72 Aligned_cols=219 Identities=16% Similarity=0.171 Sum_probs=130.8
Q ss_pred CCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCC-CCCCCCCccEEe
Q 035732 291 PSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPE-GGLPCAKLTRLE 369 (559)
Q Consensus 291 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~ 369 (559)
++++.|++++|......+..+.++++|++|++++|.+....+..+.++++|++|++++|. ++.++. .+..+++|+.|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHhhccccCceee
Confidence 566677776666555445566667777777777766555445556666777777777663 334443 355556677777
Q ss_pred ccccccccccccccccCCCcceEEecC--CCCCCcC--CCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEee
Q 035732 370 IYDCKRLEALPKGLHNLTSLQHLTIGG--ALPSLEE--DGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISR 445 (559)
Q Consensus 370 l~~~~~~~~~~~~l~~l~~L~~L~l~~--~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~ 445 (559)
+++|......+..+..+++|+.|++++ .+..++. +..+++|++|++++|. ++.. ..+..+++|+.|++++
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~-----~~~~~l~~L~~L~Ls~ 216 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREI-----PNLTPLIKLDELDLSG 216 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSC-----CCCTTCSSCCEEECTT
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccc-----cccCCCcccCEEECCC
Confidence 776654333334566667777777765 3333333 3445667777777765 3321 1356666777777776
Q ss_pred cCCCceeecccccccccccccccccceeecccccccccc-ccccccCCCcCeEEecCCCCCcccCCCCC--CCCceEEEe
Q 035732 446 CDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERL-SSSIVDLQNLTLLQLWGCPKLKYFPKKGL--PSSLLELDI 522 (559)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l 522 (559)
|. +..++... +..+++|+.|++++|. +..+ +..+..+++|++|++++ ++++.++...+ +++|+.|++
T Consensus 217 N~--l~~~~~~~------~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L 286 (440)
T 3zyj_A 217 NH--LSAIRPGS------FQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAH-NNLTLLPHDLFTPLHHLERIHL 286 (440)
T ss_dssp SC--CCEECTTT------TTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTT-SCCCCCCTTTTSSCTTCCEEEC
T ss_pred Cc--cCccChhh------hccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCC-CCCCccChhHhccccCCCEEEc
Confidence 63 33443322 6666777777777743 4443 33456667777777777 46666666432 467777777
Q ss_pred cCCh
Q 035732 523 VGCP 526 (559)
Q Consensus 523 ~~c~ 526 (559)
++||
T Consensus 287 ~~Np 290 (440)
T 3zyj_A 287 HHNP 290 (440)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7665
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=9.4e-19 Score=177.92 Aligned_cols=222 Identities=17% Similarity=0.183 Sum_probs=170.4
Q ss_pred ccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCC
Q 035732 257 LEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLH 336 (559)
Q Consensus 257 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 336 (559)
++.|++++ ++++. ++.. .+ ..+ ++|++|++++|......+..+.++++|++|++++|.+....+..+.
T Consensus 66 l~~L~L~~-n~i~~-~~~~----~~-----~~l-~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 133 (440)
T 3zyj_A 66 TRLLNLHE-NQIQI-IKVN----SF-----KHL-RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV 133 (440)
T ss_dssp CSEEECCS-CCCCE-ECTT----TT-----SSC-SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSC
T ss_pred CcEEEccC-CcCCe-eCHH----Hh-----hCC-CCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhh
Confidence 77777777 45554 2221 12 333 5899999998877666667888999999999999877665555688
Q ss_pred CCCccceeecccccCceecCCCCCCCCCccEEecccccccccccc-ccccCCCcceEEecC-CCCCCcCCCCCCCCceee
Q 035732 337 NLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALPK-GLHNLTSLQHLTIGG-ALPSLEEDGLPTNLQLLN 414 (559)
Q Consensus 337 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~ 414 (559)
.+++|++|++++|......+..+..+++|+.|++++|..+..++. .+..+++|+.|++++ .++.++....+++|++|+
T Consensus 134 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 213 (440)
T 3zyj_A 134 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELD 213 (440)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEE
T ss_pred ccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEE
Confidence 899999999999865433334567788999999999877777765 678899999999999 888888888889999999
Q ss_pred ecCccchhhhhhhcccccccCccccEEEEeecCCCceeecccccccccccccccccceeeccccccccccccc-cccCCC
Q 035732 415 IEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSSS-IVDLQN 493 (559)
Q Consensus 415 l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~ 493 (559)
+++|. +....+ ..+..+++|+.|++++|. +..++... +..+++|+.|++++| .++.++.. +..+++
T Consensus 214 Ls~N~-l~~~~~---~~~~~l~~L~~L~L~~n~--l~~~~~~~------~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~ 280 (440)
T 3zyj_A 214 LSGNH-LSAIRP---GSFQGLMHLQKLWMIQSQ--IQVIERNA------FDNLQSLVEINLAHN-NLTLLPHDLFTPLHH 280 (440)
T ss_dssp CTTSC-CCEECT---TTTTTCTTCCEEECTTCC--CCEECTTS------STTCTTCCEEECTTS-CCCCCCTTTTSSCTT
T ss_pred CCCCc-cCccCh---hhhccCccCCEEECCCCc--eeEEChhh------hcCCCCCCEEECCCC-CCCccChhHhccccC
Confidence 99997 554433 378899999999999874 45555433 778899999999994 56666653 577899
Q ss_pred cCeEEecCCC
Q 035732 494 LTLLQLWGCP 503 (559)
Q Consensus 494 L~~L~l~~c~ 503 (559)
|+.|++++++
T Consensus 281 L~~L~L~~Np 290 (440)
T 3zyj_A 281 LERIHLHHNP 290 (440)
T ss_dssp CCEEECCSSC
T ss_pred CCEEEcCCCC
Confidence 9999999854
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=1.5e-18 Score=176.99 Aligned_cols=221 Identities=21% Similarity=0.246 Sum_probs=167.7
Q ss_pred ccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCC
Q 035732 257 LEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLH 336 (559)
Q Consensus 257 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 336 (559)
++.|++++ +.++. ++.. .+ ..+ ++|++|++++|......+..+.++++|++|++++|.+....+..+.
T Consensus 77 l~~L~L~~-n~i~~-~~~~----~~-----~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 144 (452)
T 3zyi_A 77 TRYLNLME-NNIQM-IQAD----TF-----RHL-HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE 144 (452)
T ss_dssp CSEEECCS-SCCCE-ECTT----TT-----TTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSS
T ss_pred ccEEECcC-CcCce-ECHH----Hc-----CCC-CCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhc
Confidence 77777776 45554 2221 12 233 5888999988876666667888899999999999877665555678
Q ss_pred CCCccceeecccccCceecCC-CCCCCCCccEEecccccccccccc-ccccCCCcceEEecC-CCCCCcCCCCCCCCcee
Q 035732 337 NLRQLQEISIQICENLVSFPE-GGLPCAKLTRLEIYDCKRLEALPK-GLHNLTSLQHLTIGG-ALPSLEEDGLPTNLQLL 413 (559)
Q Consensus 337 ~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L 413 (559)
.+++|++|++++|.. ..++. .+..+++|+.|++++|..+..++. .+..+++|+.|++++ .+..++....+++|++|
T Consensus 145 ~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L 223 (452)
T 3zyi_A 145 YLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEEL 223 (452)
T ss_dssp SCTTCCEEECCSCCC-CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEE
T ss_pred ccCCCCEEECCCCCc-ceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEE
Confidence 899999999999864 44444 566788999999999877777765 578899999999998 88888888888999999
Q ss_pred eecCccchhhhhhhcccccccCccccEEEEeecCCCceeecccccccccccccccccceeeccccccccccccc-cccCC
Q 035732 414 NIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSSS-IVDLQ 492 (559)
Q Consensus 414 ~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~ 492 (559)
++++|. +....+ ..+.++++|+.|++++|. +..+.... +..+++|+.|++++| .+..++.. +..++
T Consensus 224 ~Ls~N~-l~~~~~---~~~~~l~~L~~L~L~~n~--l~~~~~~~------~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 224 EMSGNH-FPEIRP---GSFHGLSSLKKLWVMNSQ--VSLIERNA------FDGLASLVELNLAHN-NLSSLPHDLFTPLR 290 (452)
T ss_dssp ECTTSC-CSEECG---GGGTTCTTCCEEECTTSC--CCEECTTT------TTTCTTCCEEECCSS-CCSCCCTTSSTTCT
T ss_pred ECcCCc-CcccCc---ccccCccCCCEEEeCCCc--CceECHHH------hcCCCCCCEEECCCC-cCCccChHHhcccc
Confidence 999998 554444 368889999999999874 44444433 778899999999995 56676653 56789
Q ss_pred CcCeEEecCCC
Q 035732 493 NLTLLQLWGCP 503 (559)
Q Consensus 493 ~L~~L~l~~c~ 503 (559)
+|++|++++++
T Consensus 291 ~L~~L~L~~Np 301 (452)
T 3zyi_A 291 YLVELHLHHNP 301 (452)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEccCCC
Confidence 99999999854
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=9.9e-19 Score=168.80 Aligned_cols=224 Identities=18% Similarity=0.173 Sum_probs=167.1
Q ss_pred CCCCccEEEEcCCCCccchHHhhccCCCCceEEeeecCcccc--ccccCCCCCccceeecccccCceecCCCCCCCCCcc
Q 035732 289 LPPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKI--LPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLT 366 (559)
Q Consensus 289 l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 366 (559)
+|+++++|++++|......+..+.++++|++|++++|.+... .+..+..+++|++|++++|. +..++..+..+++|+
T Consensus 26 ~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~ 104 (306)
T 2z66_A 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLE 104 (306)
T ss_dssp CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCC
T ss_pred CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCC
Confidence 346899999999875544444578999999999999876532 24556678999999999984 455666667788999
Q ss_pred EEeccccccccccc-cccccCCCcceEEecC-CCCCCcC--CCCCCCCceeeecCccchhh-hhhhcccccccCccccEE
Q 035732 367 RLEIYDCKRLEALP-KGLHNLTSLQHLTIGG-ALPSLEE--DGLPTNLQLLNIEGNMEIWK-SMIERGRGFHRFSSLRRL 441 (559)
Q Consensus 367 ~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~-~l~~~~~--~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~l~~L~~L 441 (559)
.|++++|......+ ..+..+++|++|++++ .+..... ...+++|++|++++|. +.+ ..+ ..+..+++|+.|
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~---~~~~~l~~L~~L 180 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQENFLP---DIFTELRNLTFL 180 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE-EGGGEEC---SCCTTCTTCCEE
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc-cccccch---hHHhhCcCCCEE
Confidence 99999987544332 4688899999999998 5554332 4567899999999998 443 233 478899999999
Q ss_pred EEeecCCCceeecccccccccccccccccceeecccccccccccc-ccccCCCcCeEEecCCCCCcccCCC---CCCCCc
Q 035732 442 TISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSS-SIVDLQNLTLLQLWGCPKLKYFPKK---GLPSSL 517 (559)
Q Consensus 442 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~l~~~---~~~~~L 517 (559)
++++|. +..++... +..+++|+.|++++|. +..++. .+..+++|++|++++| .++..+.. .++++|
T Consensus 181 ~Ls~n~--l~~~~~~~------~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L 250 (306)
T 2z66_A 181 DLSQCQ--LEQLSPTA------FNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSL 250 (306)
T ss_dssp ECTTSC--CCEECTTT------TTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTS-CCCBCSSSSCCCCCTTC
T ss_pred ECCCCC--cCCcCHHH------hcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCC-CCcccCHHHHHhhhccC
Confidence 999984 44454433 7778999999999954 555544 5678899999999995 67665442 234699
Q ss_pred eEEEecCChh
Q 035732 518 LELDIVGCPL 527 (559)
Q Consensus 518 ~~L~l~~c~~ 527 (559)
+.|++++|+-
T Consensus 251 ~~L~L~~N~~ 260 (306)
T 2z66_A 251 AFLNLTQNDF 260 (306)
T ss_dssp CEEECTTCCE
T ss_pred CEEEccCCCe
Confidence 9999999864
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=3.3e-18 Score=168.63 Aligned_cols=252 Identities=20% Similarity=0.204 Sum_probs=169.7
Q ss_pred CCCccEEEeccccCccEEeccCchhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccC
Q 035732 64 IPKLEELEIKNIKNETYIWKSHDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLP 143 (559)
Q Consensus 64 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~ 143 (559)
.++|++|+++++ .++. ++...+..+++|++|+++++ .++.+++. .+..+ ++|++|++++|.. ..+|
T Consensus 51 ~~~L~~L~l~~n-~i~~---~~~~~~~~l~~L~~L~L~~n-~l~~~~~~----~~~~l----~~L~~L~Ls~n~l-~~~~ 116 (353)
T 2z80_A 51 TEAVKSLDLSNN-RITY---ISNSDLQRCVNLQALVLTSN-GINTIEED----SFSSL----GSLEHLDLSYNYL-SNLS 116 (353)
T ss_dssp CTTCCEEECTTS-CCCE---ECTTTTTTCTTCCEEECTTS-CCCEECTT----TTTTC----TTCCEEECCSSCC-SSCC
T ss_pred cccCcEEECCCC-cCcc---cCHHHhccCCCCCEEECCCC-ccCccCHh----hcCCC----CCCCEEECCCCcC-CcCC
Confidence 358999999988 5666 67667889999999999986 77777654 35556 8999999999865 5666
Q ss_pred CC-CCCCCccceeeccCCCCccccCC---CCCCCCccEEEecccCCCcccCcccccCCCCCccEEecCCCCCcccc-ccc
Q 035732 144 QS-SFSLSSLREIEIYNCSSLVSFPE---VALPSKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCRWLTFI-AAV 218 (559)
Q Consensus 144 ~~-~~~l~~L~~L~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~ 218 (559)
.. +..+++|++|++++|.. ..++. +..+++|++|++++|..+..++...+ .++++|++|++++|. ++.. +..
T Consensus 117 ~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~~~~ 193 (353)
T 2z80_A 117 SSWFKPLSSLTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF-AGLTFLEELEIDASD-LQSYEPKS 193 (353)
T ss_dssp HHHHTTCTTCSEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT-TTCCEEEEEEEEETT-CCEECTTT
T ss_pred HhHhCCCccCCEEECCCCCC-cccCchhhhccCCCCcEEECCCCccccccCHHHc-cCCCCCCEEECCCCC-cCccCHHH
Confidence 54 78899999999999844 45553 67889999999999866666654322 456889999999985 4433 322
Q ss_pred -cCCCCcceEEeecccCccccchhhccccccccccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEE
Q 035732 219 -QLPSSLKKLQIRRCDNIRTLTAEEGIQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLY 297 (559)
Q Consensus 219 -~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~ 297 (559)
..+++|+.|+++++. ++.++...... + ++|++|++++ +.++. ++...++. ......++.++
T Consensus 194 l~~l~~L~~L~l~~n~-l~~~~~~~~~~------~--~~L~~L~L~~-n~l~~-~~~~~l~~-------~~~~~~l~~l~ 255 (353)
T 2z80_A 194 LKSIQNVSHLILHMKQ-HILLLEIFVDV------T--SSVECLELRD-TDLDT-FHFSELST-------GETNSLIKKFT 255 (353)
T ss_dssp TTTCSEEEEEEEECSC-STTHHHHHHHH------T--TTEEEEEEES-CBCTT-CCCC-------------CCCCCCEEE
T ss_pred HhccccCCeecCCCCc-cccchhhhhhh------c--ccccEEECCC-Ccccc-cccccccc-------ccccchhhccc
Confidence 567889999998853 55555443221 1 2489999988 45554 22211111 11224567777
Q ss_pred EcCCCCcc----chHHhhccCCCCceEEeeecCcccccccc-CCCCCccceeecccccC
Q 035732 298 VYGCSKVE----SIAERLDNNTSLEKISIKRCGTLKILPSG-LHNLRQLQEISIQICEN 351 (559)
Q Consensus 298 l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~ 351 (559)
+.++.... .+|..+..+++|++|++++|.+. .+|.. +..+++|++|++++|+.
T Consensus 256 L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 256 FRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp EESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred cccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCc
Confidence 77665432 34556667777777777776554 34444 35666777777766643
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=2.1e-19 Score=174.26 Aligned_cols=106 Identities=14% Similarity=0.148 Sum_probs=52.9
Q ss_pred hccCCCCceEEeeecCccccccccC-CCCCccceeecccccCceecCCCCCCCCCccEEeccccccccccccccccCCCc
Q 035732 311 LDNNTSLEKISIKRCGTLKILPSGL-HNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALPKGLHNLTSL 389 (559)
Q Consensus 311 ~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 389 (559)
+..+++|++|++++|.+....+..+ ..+++|++|++++|.. +.++... .+++|+.|++++|.. ..+|..+..+++|
T Consensus 140 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~-~l~~L~~L~Ls~N~l-~~l~~~~~~l~~L 216 (317)
T 3o53_A 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI-YDVKGQV-VFAKLKTLDLSSNKL-AFMGPEFQSAAGV 216 (317)
T ss_dssp TGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC-CEEECCC-CCTTCCEEECCSSCC-CEECGGGGGGTTC
T ss_pred hhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC-ccccccc-ccccCCEEECCCCcC-CcchhhhcccCcc
Confidence 3344444555554444433333333 2455555555555532 2222221 244666666666643 3444445566666
Q ss_pred ceEEecC-CCCCCcC-CCCCCCCceeeecCcc
Q 035732 390 QHLTIGG-ALPSLEE-DGLPTNLQLLNIEGNM 419 (559)
Q Consensus 390 ~~L~l~~-~l~~~~~-~~~~~~L~~L~l~~~~ 419 (559)
+.|++++ .+..++. ...+++|+.|++++|+
T Consensus 217 ~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 217 TWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp SEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred cEEECcCCcccchhhHhhcCCCCCEEEccCCC
Confidence 6666655 4444433 3344566666666666
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=1.1e-17 Score=175.04 Aligned_cols=253 Identities=26% Similarity=0.317 Sum_probs=135.1
Q ss_pred ceeEEecccCCCCcccCCCCCCCCccceeeccCCCCccccCCCCCCCCccEEEecccCCCcccCcccccCCCCCccEEec
Q 035732 127 RLEYLGLTSCHGLVKLPQSSFSLSSLREIEIYNCSSLVSFPEVALPSKLKKIRISYCGALKSLPEAWMCDTNSSLEILNI 206 (559)
Q Consensus 127 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 206 (559)
+++.|++++|.. ..+|..+. ++|++|++++|. +..+|. .+++|++|++++|. ++.+|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L-~~lp~~l~--~~L~~L~L~~N~-l~~lp~--~l~~L~~L~Ls~N~-l~~lp~-----~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGL-TTLPDCLP--AHITTLVIPDNN-LTSLPA--LPPELRTLEVSGNQ-LTSLPV-----LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCC-SCCCSCCC--TTCSEEEECSCC-CSCCCC--CCTTCCEEEECSCC-CSCCCC-----CCTTCCEEEE
T ss_pred CCcEEEecCCCc-CccChhhC--CCCcEEEecCCC-CCCCCC--cCCCCCEEEcCCCc-CCcCCC-----CCCCCCEEEC
Confidence 456666665543 45555443 566666666552 334443 34566666666655 444443 2255666666
Q ss_pred CCCCCccccccccCCCCcceEEeecccCccccchhhccccccccccccCCccEEEEecCCCccccccCCCCCcccccccc
Q 035732 207 EHCRWLTFIAAVQLPSSLKKLQIRRCDNIRTLTAEEGIQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEV 286 (559)
Q Consensus 207 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~ 286 (559)
++|. ++.++. .+++|+.|+++++ .++.++... ++|++|++++ +.++. ++
T Consensus 109 s~N~-l~~l~~--~l~~L~~L~L~~N-~l~~lp~~l------------~~L~~L~Ls~-N~l~~-l~------------- 157 (622)
T 3g06_A 109 FSNP-LTHLPA--LPSGLCKLWIFGN-QLTSLPVLP------------PGLQELSVSD-NQLAS-LP------------- 157 (622)
T ss_dssp CSCC-CCCCCC--CCTTCCEEECCSS-CCSCCCCCC------------TTCCEEECCS-SCCSC-CC-------------
T ss_pred cCCc-CCCCCC--CCCCcCEEECCCC-CCCcCCCCC------------CCCCEEECcC-CcCCC-cC-------------
Confidence 6553 343333 4455666665552 344444321 1266666666 34443 21
Q ss_pred CCCCCCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCcc
Q 035732 287 GNLPPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLT 366 (559)
Q Consensus 287 ~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 366 (559)
..+.+|+.|++.+|.... +| ..+++|+.|++++|.+.. +|. .+++|+.|++++|. +..+|.. +++|+
T Consensus 158 -~~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~-l~~l~~~---~~~L~ 224 (622)
T 3g06_A 158 -ALPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNR-LTSLPAL---PSGLK 224 (622)
T ss_dssp -CCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC-CSSCCCC---CTTCC
T ss_pred -CccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCc-ccccCCC---CCCCC
Confidence 112466777776655332 33 345667777777765443 332 23567777777663 3344432 24677
Q ss_pred EEeccccccccccccccccCCCcceEEecC-CCCCCcCCCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEee
Q 035732 367 RLEIYDCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEEDGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISR 445 (559)
Q Consensus 367 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~ 445 (559)
.|++++|. ++.+| ..+++|+.|++++ .++.++. .+++|+.|++++|. ++. ++ ..+..+++|+.|++++
T Consensus 225 ~L~Ls~N~-L~~lp---~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~-L~~-lp---~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 225 ELIVSGNR-LTSLP---VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQ-LTR-LP---ESLIHLSSETTVNLEG 293 (622)
T ss_dssp EEECCSSC-CSCCC---CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSC-CCS-CC---GGGGGSCTTCEEECCS
T ss_pred EEEccCCc-cCcCC---CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCC-CCc-CC---HHHhhccccCEEEecC
Confidence 77777664 33444 3446666666666 5655554 45666667766665 332 22 2355666666666666
Q ss_pred c
Q 035732 446 C 446 (559)
Q Consensus 446 ~ 446 (559)
|
T Consensus 294 N 294 (622)
T 3g06_A 294 N 294 (622)
T ss_dssp C
T ss_pred C
Confidence 5
No 63
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=1.7e-18 Score=170.78 Aligned_cols=226 Identities=16% Similarity=0.084 Sum_probs=136.6
Q ss_pred CCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCC--CCCCCCCccEE
Q 035732 291 PSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPE--GGLPCAKLTRL 368 (559)
Q Consensus 291 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L 368 (559)
++|++|++++|......+..+.++++|++|++++|.+....+..+.++++|++|++++|.. ..++. .+..+++|+.|
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~~l~~L~~L 154 (353)
T 2z80_A 76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY-KTLGETSLFSHLTKLQIL 154 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCC-SSSCSSCSCTTCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCC-cccCchhhhccCCCCcEE
Confidence 4666677666655444455566667777777776655443333356667777777776633 34443 34556677777
Q ss_pred ecccccccccc-ccccccCCCcceEEecC-CCCCCc--CCCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEe
Q 035732 369 EIYDCKRLEAL-PKGLHNLTSLQHLTIGG-ALPSLE--EDGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTIS 444 (559)
Q Consensus 369 ~l~~~~~~~~~-~~~l~~l~~L~~L~l~~-~l~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~ 444 (559)
++++|..+..+ +..+..+++|++|++++ .+..+. ....+++|++|++++|. +..... ..+..+++|+.|+++
T Consensus 155 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~---~~~~~~~~L~~L~L~ 230 (353)
T 2z80_A 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLE---IFVDVTSSVECLELR 230 (353)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHH---HHHHHTTTEEEEEEE
T ss_pred ECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-cccchh---hhhhhcccccEEECC
Confidence 77776444444 34566677777777766 554432 24456777778887777 333222 235567888888888
Q ss_pred ecCCCceeecccccccccccccccccceeeccccc----cccccccccccCCCcCeEEecCCCCCcccCCCC--CCCCce
Q 035732 445 RCDDDMVSFPLENKRLGTALPLLASLTSLGISRFP----NLERLSSSIVDLQNLTLLQLWGCPKLKYFPKKG--LPSSLL 518 (559)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~--~~~~L~ 518 (559)
+|.. ..++...- ........++.++++++. .+..+|..+..+++|++|++++ +.++.+|... -.++|+
T Consensus 231 ~n~l--~~~~~~~l---~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~ 304 (353)
T 2z80_A 231 DTDL--DTFHFSEL---STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR-NQLKSVPDGIFDRLTSLQ 304 (353)
T ss_dssp SCBC--TTCCCC---------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCS-SCCCCCCTTTTTTCTTCC
T ss_pred CCcc--cccccccc---ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCC-CCCCccCHHHHhcCCCCC
Confidence 8742 22221110 001123455555555532 2335676778889999999999 5788888743 367899
Q ss_pred EEEecCChh
Q 035732 519 ELDIVGCPL 527 (559)
Q Consensus 519 ~L~l~~c~~ 527 (559)
+|++++|+-
T Consensus 305 ~L~L~~N~~ 313 (353)
T 2z80_A 305 KIWLHTNPW 313 (353)
T ss_dssp EEECCSSCB
T ss_pred EEEeeCCCc
Confidence 999998863
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=3.3e-18 Score=163.29 Aligned_cols=201 Identities=22% Similarity=0.243 Sum_probs=139.0
Q ss_pred CCCCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceec-CCCCCCCCCccE
Q 035732 289 LPPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSF-PEGGLPCAKLTR 367 (559)
Q Consensus 289 l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~ 367 (559)
+|+++++|+++++......+..+..+++|++|++++|.+....+..+..+++|++|++++|..+..+ +..+..+++|+.
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 3468999999988766655567888899999999988776666777888899999999988755555 445667778999
Q ss_pred EeccccccccccccccccCCCcceEEecC-CCCCCcC--CCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEe
Q 035732 368 LEIYDCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEE--DGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTIS 444 (559)
Q Consensus 368 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~ 444 (559)
|++++|......+..+..+++|++|++++ .+..++. ...+++|++|++++|. ++.... ..+..+++|+.|+++
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~---~~~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPE---RAFRGLHSLDRLLLH 185 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECT---TTTTTCTTCCEEECC
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCH---HHhcCccccCEEECC
Confidence 99988876555566778888888888887 6666554 3456777777777776 332222 246667777777777
Q ss_pred ecCCCceeecccccccccccccccccceeecccccccccccc-ccccCCCcCeEEecCC
Q 035732 445 RCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSS-SIVDLQNLTLLQLWGC 502 (559)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~c 502 (559)
+|. +..+... .+..+++|+.|++++| .+..++. .+..+++|++|+++++
T Consensus 186 ~n~--l~~~~~~------~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 186 QNR--VAHVHPH------AFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp SSC--CCEECTT------TTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSS
T ss_pred CCc--ccccCHh------HccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCC
Confidence 663 3333222 2555667777777774 3444443 3556677777777764
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=1.2e-17 Score=174.78 Aligned_cols=233 Identities=27% Similarity=0.314 Sum_probs=112.5
Q ss_pred CCccEEEeccccCccEEeccCchhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccCC
Q 035732 65 PKLEELEIKNIKNETYIWKSHDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLPQ 144 (559)
Q Consensus 65 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~~ 144 (559)
++|++|+++++ +++. ++. .+++|++|++++| .++.++.. + ++|++|++++|.. ..+|.
T Consensus 61 ~~L~~L~L~~N-~l~~---lp~----~l~~L~~L~Ls~N-~l~~lp~~--------l----~~L~~L~Ls~N~l-~~l~~ 118 (622)
T 3g06_A 61 AHITTLVIPDN-NLTS---LPA----LPPELRTLEVSGN-QLTSLPVL--------P----PGLLELSIFSNPL-THLPA 118 (622)
T ss_dssp TTCSEEEECSC-CCSC---CCC----CCTTCCEEEECSC-CCSCCCCC--------C----TTCCEEEECSCCC-CCCCC
T ss_pred CCCcEEEecCC-CCCC---CCC----cCCCCCEEEcCCC-cCCcCCCC--------C----CCCCEEECcCCcC-CCCCC
Confidence 45666666665 3433 332 3566666666664 45554431 1 5666666666543 44444
Q ss_pred CCCCCCccceeeccCCCCccccCCCCCCCCccEEEecccCCCcccCcccccCCCCCccEEecCCCCCccccccccCCCCc
Q 035732 145 SSFSLSSLREIEIYNCSSLVSFPEVALPSKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCRWLTFIAAVQLPSSL 224 (559)
Q Consensus 145 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L 224 (559)
.+++|+.|++++|. +..+|. .+++|++|++++|. +..+|.. .++|+.|++++|. ++.++ ..+++|
T Consensus 119 ---~l~~L~~L~L~~N~-l~~lp~--~l~~L~~L~Ls~N~-l~~l~~~-----~~~L~~L~L~~N~-l~~l~--~~~~~L 183 (622)
T 3g06_A 119 ---LPSGLCKLWIFGNQ-LTSLPV--LPPGLQELSVSDNQ-LASLPAL-----PSELCKLWAYNNQ-LTSLP--MLPSGL 183 (622)
T ss_dssp ---CCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSC-CSCCCCC-----CTTCCEEECCSSC-CSCCC--CCCTTC
T ss_pred ---CCCCcCEEECCCCC-CCcCCC--CCCCCCEEECcCCc-CCCcCCc-----cCCCCEEECCCCC-CCCCc--ccCCCC
Confidence 34556666666552 333443 13556666666654 3333321 1445555555552 33333 334445
Q ss_pred ceEEeecccCccccchhhccccccccccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEcCCCCc
Q 035732 225 KKLQIRRCDNIRTLTAEEGIQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKV 304 (559)
Q Consensus 225 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~~~~~ 304 (559)
+.|+++++ .++.++.. +++|+.|++.+|...
T Consensus 184 ~~L~Ls~N-~l~~l~~~------------------------------------------------~~~L~~L~L~~N~l~ 214 (622)
T 3g06_A 184 QELSVSDN-QLASLPTL------------------------------------------------PSELYKLWAYNNRLT 214 (622)
T ss_dssp CEEECCSS-CCSCCCCC------------------------------------------------CTTCCEEECCSSCCS
T ss_pred cEEECCCC-CCCCCCCc------------------------------------------------cchhhEEECcCCccc
Confidence 55555442 23332221 134555555444322
Q ss_pred cchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEeccccccccccccccc
Q 035732 305 ESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALPKGLH 384 (559)
Q Consensus 305 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 384 (559)
.++ ..+++|++|++++|.+.. +| ..+++|+.|++++| .++.+|. .+++|+.|++++|. +..+|..+.
T Consensus 215 -~l~---~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~-L~~lp~~l~ 281 (622)
T 3g06_A 215 -SLP---ALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRNQ-LTRLPESLI 281 (622)
T ss_dssp -SCC---CCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CCSCCGGGG
T ss_pred -ccC---CCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCCC-CCcCCHHHh
Confidence 222 123455555555554332 33 23455555666555 2334443 23456666666554 234555555
Q ss_pred cCCCcceEEecC
Q 035732 385 NLTSLQHLTIGG 396 (559)
Q Consensus 385 ~l~~L~~L~l~~ 396 (559)
.+++|+.|++++
T Consensus 282 ~l~~L~~L~L~~ 293 (622)
T 3g06_A 282 HLSSETTVNLEG 293 (622)
T ss_dssp GSCTTCEEECCS
T ss_pred hccccCEEEecC
Confidence 666666666655
No 66
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.75 E-value=8.6e-18 Score=162.21 Aligned_cols=202 Identities=20% Similarity=0.198 Sum_probs=133.1
Q ss_pred CCccEEEEcCCCCccc--hHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCC--CCCCCCCcc
Q 035732 291 PSLKSLYVYGCSKVES--IAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPE--GGLPCAKLT 366 (559)
Q Consensus 291 ~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~L~ 366 (559)
++|++|++++|..... .+..+..+++|++|++++|.+. .++..+..+++|++|++++|.. ..++. .+..+++|+
T Consensus 52 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~ 129 (306)
T 2z66_A 52 TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLI 129 (306)
T ss_dssp TTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEE-ESSTTTTTTTTCTTCC
T ss_pred ccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcc-cccccchhhhhccCCC
Confidence 4677777766654321 2345556777777777777554 3555566777777777777643 33332 455666778
Q ss_pred EEeccccccccccccccccCCCcceEEecC-CCCC--CcC-CCCCCCCceeeecCccchhhhhhhcccccccCccccEEE
Q 035732 367 RLEIYDCKRLEALPKGLHNLTSLQHLTIGG-ALPS--LEE-DGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLT 442 (559)
Q Consensus 367 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~--~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~ 442 (559)
.|++++|......+..+..+++|++|++++ .+.. ++. ...+++|++|++++|. +....+ ..+..+++|++|+
T Consensus 130 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~---~~~~~l~~L~~L~ 205 (306)
T 2z66_A 130 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSP---TAFNSLSSLQVLN 205 (306)
T ss_dssp EEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECT---TTTTTCTTCCEEE
T ss_pred EEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC-cCCcCH---HHhcCCCCCCEEE
Confidence 888877766555566677777888888777 4443 222 4566788888888887 443333 3577888888888
Q ss_pred EeecCCCceeecccccccccccccccccceeeccccccccccccccccCC-CcCeEEecCCCCCcc
Q 035732 443 ISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSSSIVDLQ-NLTLLQLWGCPKLKY 507 (559)
Q Consensus 443 l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~-~L~~L~l~~c~~l~~ 507 (559)
+++|. +..++... +..+++|+.|++++|......+..+..++ +|++|++++| .++.
T Consensus 206 L~~N~--l~~~~~~~------~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N-~~~~ 262 (306)
T 2z66_A 206 MSHNN--FFSLDTFP------YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN-DFAC 262 (306)
T ss_dssp CTTSC--CSBCCSGG------GTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC-CEEC
T ss_pred CCCCc--cCccChhh------ccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC-Ceec
Confidence 88874 33443322 66778999999999665555566667774 8999999985 4443
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=8.3e-18 Score=172.51 Aligned_cols=86 Identities=12% Similarity=0.096 Sum_probs=56.5
Q ss_pred HHHhhhhhccCceeEEecccCCCCcccCCCCCCCCccceeeccCCCCccccCCCCCCCCccEEEecccCCCcccCccccc
Q 035732 116 DQQQQLCELSCRLEYLGLTSCHGLVKLPQSSFSLSSLREIEIYNCSSLVSFPEVALPSKLKKIRISYCGALKSLPEAWMC 195 (559)
Q Consensus 116 ~~l~~L~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 195 (559)
..+..+...+++|++|++++|......|..+..+++|++|++++|...... ++..+++|++|++++|. +..++..
T Consensus 24 ~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~l~~l~~L~~L~Ls~N~-l~~l~~~--- 98 (487)
T 3oja_A 24 QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNY-VQELLVG--- 98 (487)
T ss_dssp HHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE-ECTTCTTCCEEECCSSE-EEEEEEC---
T ss_pred HHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc-ccccCCCCCEEEecCCc-CCCCCCC---
Confidence 445555444568999999988664444567888888888888887543333 36777777777777775 4443322
Q ss_pred CCCCCccEEecCCC
Q 035732 196 DTNSSLEILNIEHC 209 (559)
Q Consensus 196 ~~~~~L~~L~l~~~ 209 (559)
++|++|++++|
T Consensus 99 ---~~L~~L~L~~N 109 (487)
T 3oja_A 99 ---PSIETLHAANN 109 (487)
T ss_dssp ---TTCCEEECCSS
T ss_pred ---CCcCEEECcCC
Confidence 45666666665
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=1e-17 Score=159.90 Aligned_cols=218 Identities=17% Similarity=0.154 Sum_probs=169.2
Q ss_pred cEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEecccc
Q 035732 294 KSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDC 373 (559)
Q Consensus 294 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 373 (559)
+.++..+.. +..+|.. -.++|++|++++|.+....+..+..+++|++|++++|......+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~-l~~ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQG-LQAVPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSC-CSSCCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCC-cccCCcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 445554433 3344432 3469999999999877766677899999999999999654444667778889999999999
Q ss_pred cccccc-ccccccCCCcceEEecC-CCCCCcC--CCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCCC
Q 035732 374 KRLEAL-PKGLHNLTSLQHLTIGG-ALPSLEE--DGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDD 449 (559)
Q Consensus 374 ~~~~~~-~~~l~~l~~L~~L~l~~-~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 449 (559)
..+..+ +..+..+++|++|++++ .+..++. ...+++|++|++++|. +..... ..+..+++|+.|++++|.
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~---~~~~~l~~L~~L~l~~n~-- 164 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPD---DTFRDLGNLTHLFLHGNR-- 164 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT---TTTTTCTTCCEEECCSSC--
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCH---hHhccCCCccEEECCCCc--
Confidence 755555 67889999999999999 7777644 5568999999999998 443332 357889999999999984
Q ss_pred ceeecccccccccccccccccceeeccccccccccccccccCCCcCeEEecCCCCCcccCCC--CCCCCceEEEecCChh
Q 035732 450 MVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSSSIVDLQNLTLLQLWGCPKLKYFPKK--GLPSSLLELDIVGCPL 527 (559)
Q Consensus 450 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~~ 527 (559)
+..++... +..+++|+.|++++|......+..+..+++|++|++++ +.++.++.. ...++|+.|++++|+.
T Consensus 165 l~~~~~~~------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 165 ISSVPERA------FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp CCEECTTT------TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred ccccCHHH------hcCccccCEEECCCCcccccCHhHccCcccccEeeCCC-CcCCcCCHHHcccCcccCEEeccCCCc
Confidence 55565543 77889999999999654444477788899999999999 578887752 3357999999999865
No 69
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=1.8e-17 Score=153.78 Aligned_cols=199 Identities=17% Similarity=0.157 Sum_probs=123.7
Q ss_pred CCceEEeeecCccccccccCCCCCccceeecccccCceecCC-CCCCCCCccEEeccccccccccc-cccccCCCcceEE
Q 035732 316 SLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPE-GGLPCAKLTRLEIYDCKRLEALP-KGLHNLTSLQHLT 393 (559)
Q Consensus 316 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~ 393 (559)
+|++|++++|.+....+..+.++++|++|++++|..++.++. .+..+++|++|++++|..++.++ ..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 344444444433332223344455555555555532333333 33344455555555522233333 3455666666666
Q ss_pred ecC-CCCCCcCCCCCCCCc---eeeecCccchhhhhhhcccccccCcccc-EEEEeecCCCceeeccccccccccccccc
Q 035732 394 IGG-ALPSLEEDGLPTNLQ---LLNIEGNMEIWKSMIERGRGFHRFSSLR-RLTISRCDDDMVSFPLENKRLGTALPLLA 468 (559)
Q Consensus 394 l~~-~l~~~~~~~~~~~L~---~L~l~~~~~l~~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~l~ 468 (559)
+++ .+..++....+++|+ +|++++|..+..... ..+..+++|+ .|++++|. +..++... +.. +
T Consensus 112 l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~---~~~~~l~~L~~~L~l~~n~--l~~i~~~~------~~~-~ 179 (239)
T 2xwt_C 112 IFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV---NAFQGLCNETLTLKLYNNG--FTSVQGYA------FNG-T 179 (239)
T ss_dssp EEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECT---TTTTTTBSSEEEEECCSCC--CCEECTTT------TTT-C
T ss_pred CCCCCCccccccccccccccccEEECCCCcchhhcCc---ccccchhcceeEEEcCCCC--CcccCHhh------cCC-C
Confidence 666 555555555556666 888888833554333 3678899999 99999874 45666543 544 7
Q ss_pred ccceeecccccccccccc-ccccC-CCcCeEEecCCCCCcccCCCCCCCCceEEEecCChhh
Q 035732 469 SLTSLGISRFPNLERLSS-SIVDL-QNLTLLQLWGCPKLKYFPKKGLPSSLLELDIVGCPLI 528 (559)
Q Consensus 469 ~L~~L~l~~~~~l~~~~~-~~~~~-~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l 528 (559)
+|+.|++++|..++.++. .+..+ ++|++|++++ +.++.+|.. .+++|+.|++++++.+
T Consensus 180 ~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK-GLEHLKELIARNTWTL 239 (239)
T ss_dssp EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT-TCTTCSEEECTTC---
T ss_pred CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh-HhccCceeeccCccCC
Confidence 999999999756888764 46778 9999999999 689999886 4579999999988653
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=1.1e-17 Score=162.10 Aligned_cols=212 Identities=16% Similarity=0.156 Sum_probs=110.6
Q ss_pred CCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEec
Q 035732 291 PSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEI 370 (559)
Q Consensus 291 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 370 (559)
++|++|++++|......+..+..+++|++|++++|.+....+ +..+++|++|++++|. ++.++. .++|+.|++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~-l~~l~~----~~~L~~L~l 106 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELLV----GPSIETLHA 106 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE-EEEEEE----CTTCCEEEC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc-cccccC----CCCcCEEEC
Confidence 356666666655444445555666666666666665443222 5556666666666653 233321 135666666
Q ss_pred cccccccccccccccCCCcceEEecC-CCCCCcC--CCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecC
Q 035732 371 YDCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEE--DGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCD 447 (559)
Q Consensus 371 ~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~ 447 (559)
++|......+ ..+++|++|++++ .+..++. ...+++|++|++++|. +....+. ..+..+++|++|++++|.
T Consensus 107 ~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~--~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 107 ANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFA--ELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp CSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGG--GGGGGTTTCCEEECTTSC
T ss_pred CCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC-CCcccHH--HHhhccCcCCEEECCCCc
Confidence 6654332221 2245566666666 5554432 2334566666666665 3322222 122355666666666653
Q ss_pred CCceeecccccccccccccccccceeeccccccccccccccccCCCcCeEEecCCCCCcccCCC-CCCCCceEEEecCCh
Q 035732 448 DDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSSSIVDLQNLTLLQLWGCPKLKYFPKK-GLPSSLLELDIVGCP 526 (559)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~ 526 (559)
+..++. ...+++|++|++++ +.+..++..+..+++|++|++++ +.++.+|.. ...++|+.|++++|+
T Consensus 181 --l~~~~~--------~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 181 --IYDVKG--------QVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp --CCEEEC--------CCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCC
T ss_pred --Cccccc--------ccccccCCEEECCC-CcCCcchhhhcccCcccEEECcC-CcccchhhHhhcCCCCCEEEccCCC
Confidence 333322 11346666666666 34555555555666666666666 355565552 224566666666654
Q ss_pred h
Q 035732 527 L 527 (559)
Q Consensus 527 ~ 527 (559)
.
T Consensus 249 ~ 249 (317)
T 3o53_A 249 F 249 (317)
T ss_dssp C
T ss_pred c
Confidence 3
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=3.2e-17 Score=168.18 Aligned_cols=213 Identities=16% Similarity=0.152 Sum_probs=133.9
Q ss_pred CCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEec
Q 035732 291 PSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEI 370 (559)
Q Consensus 291 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 370 (559)
++|++|++++|......+..+..+++|++|++++|.+....+ +..+++|++|++++|. ++.++. .++|+.|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELLV----GPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-EEEEEE----CTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-CCCCCC----CCCcCEEEC
Confidence 367777777766555555667777777777777776554433 6677777777777763 333432 147777777
Q ss_pred cccccccccccccccCCCcceEEecC-CCCCCcC--CCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecC
Q 035732 371 YDCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEE--DGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCD 447 (559)
Q Consensus 371 ~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~ 447 (559)
++|......+ ..+++|+.|++++ .+..+++ ...+++|++|++++|. +....+. .....+++|+.|++++|.
T Consensus 107 ~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~--~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 107 ANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFA--ELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp CSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC-CCEEEGG--GGGGGTTTCCEEECTTSC
T ss_pred cCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC-CCCcChH--HHhhhCCcccEEecCCCc
Confidence 7775433322 2346777777777 6655433 3346777777777776 4433332 222367777777777764
Q ss_pred CCceeecccccccccccccccccceeeccccccccccccccccCCCcCeEEecCCCCCcccCCC-CCCCCceEEEecCCh
Q 035732 448 DDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSSSIVDLQNLTLLQLWGCPKLKYFPKK-GLPSSLLELDIVGCP 526 (559)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~ 526 (559)
+..++. ...+++|+.|++++ +.+..+|..+..+++|+.|++++ +.++.+|.. ..+++|+.|++++|+
T Consensus 181 --l~~~~~--------~~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 181 --IYDVKG--------QVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp --CCEEEC--------CCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCC
T ss_pred --cccccc--------cccCCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecC-CcCcccchhhccCCCCCEEEcCCCC
Confidence 333333 22457777888877 45666666677777788888877 467777663 335677788777775
Q ss_pred hh
Q 035732 527 LI 528 (559)
Q Consensus 527 ~l 528 (559)
..
T Consensus 249 l~ 250 (487)
T 3oja_A 249 FH 250 (487)
T ss_dssp BC
T ss_pred Cc
Confidence 43
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.71 E-value=9.6e-18 Score=162.11 Aligned_cols=202 Identities=14% Similarity=0.096 Sum_probs=140.0
Q ss_pred cCCCCceEEeeecCccccccccC--CCCCccceeecccccCceecCCCCCCC-----CCccEEecccccccccccccccc
Q 035732 313 NNTSLEKISIKRCGTLKILPSGL--HNLRQLQEISIQICENLVSFPEGGLPC-----AKLTRLEIYDCKRLEALPKGLHN 385 (559)
Q Consensus 313 ~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~l~~ 385 (559)
++++|++|++++|.+.+.+|..+ ..+++|++|++++|... .+|..+..+ ++|++|++++|......+..+..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA-TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCS-SSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCc-chhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 67888888888888777677665 77888888888887543 334333222 68888888888765555577888
Q ss_pred CCCcceEEecC-CCCC----CcCC--CCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCCCceeeccccc
Q 035732 386 LTSLQHLTIGG-ALPS----LEED--GLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENK 458 (559)
Q Consensus 386 l~~L~~L~l~~-~l~~----~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 458 (559)
+++|++|++++ .+.. .+.. ..+++|++|++++|. ++.........+..+++|+.|++++|. +.......
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~- 247 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNS--LRDAAGAP- 247 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSC--CCSSCCCS-
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCc--CCcccchh-
Confidence 88888888887 4332 1122 566889999999887 442111100245678899999999874 22222111
Q ss_pred ccccccccccccceeeccccccccccccccccCCCcCeEEecCCCCCcccCCCCCCCCceEEEecCChh
Q 035732 459 RLGTALPLLASLTSLGISRFPNLERLSSSIVDLQNLTLLQLWGCPKLKYFPKKGLPSSLLELDIVGCPL 527 (559)
Q Consensus 459 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~ 527 (559)
.+..+++|+.|++++ +.++.+|..+. ++|++|++++ ++++.+|.....++|++|++++|+-
T Consensus 248 ----~~~~l~~L~~L~Ls~-N~l~~ip~~~~--~~L~~L~Ls~-N~l~~~p~~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 248 ----SCDWPSQLNSLNLSF-TGLKQVPKGLP--AKLSVLDLSY-NRLDRNPSPDELPQVGNLSLKGNPF 308 (312)
T ss_dssp ----CCCCCTTCCEEECTT-SCCSSCCSSCC--SEEEEEECCS-SCCCSCCCTTTSCEEEEEECTTCTT
T ss_pred ----hhhhcCCCCEEECCC-CccChhhhhcc--CCceEEECCC-CCCCCChhHhhCCCCCEEeccCCCC
Confidence 244568999999999 45678887554 7899999998 5788887744468899999998753
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=2.7e-16 Score=149.22 Aligned_cols=131 Identities=18% Similarity=0.107 Sum_probs=76.9
Q ss_pred CCCCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEE
Q 035732 289 LPPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRL 368 (559)
Q Consensus 289 l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 368 (559)
+|+++++|++++|......+..+.++++|++|++++|.+....+..+.++++|++|++++|......+..+..+++|+.|
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 44678888888876555444566777777777777776555444566677777777777775433333445556677777
Q ss_pred eccccccccccccccccCCCcceEEecC-CCCCC--cC-CCCCCCCceeeecCcc
Q 035732 369 EIYDCKRLEALPKGLHNLTSLQHLTIGG-ALPSL--EE-DGLPTNLQLLNIEGNM 419 (559)
Q Consensus 369 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~--~~-~~~~~~L~~L~l~~~~ 419 (559)
++++|......+..+..+++|++|++++ .+..+ +. ...+++|++|++++|.
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC
Confidence 7776654333333455566666666655 44331 11 2233444444444444
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.69 E-value=2.4e-18 Score=166.40 Aligned_cols=177 Identities=20% Similarity=0.186 Sum_probs=91.8
Q ss_pred CCccEEEEcCCCCccchHHhhccC-----CCCceEEeeecCccccccccCCCCCccceeecccccCcee--cCCC--CCC
Q 035732 291 PSLKSLYVYGCSKVESIAERLDNN-----TSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVS--FPEG--GLP 361 (559)
Q Consensus 291 ~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~--~~~ 361 (559)
++|++|++++|..... |..+..+ ++|++|++++|.+....+..+..+++|++|++++|..... ++.. +..
T Consensus 121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 4566666666554333 3334333 5566666666555444445555555555555555543221 1111 133
Q ss_pred CCCccEEecccccccc--ccc-cccccCCCcceEEecCCCCCCcCCCCCCCCceeeecCccchhhhhhhcccccccCccc
Q 035732 362 CAKLTRLEIYDCKRLE--ALP-KGLHNLTSLQHLTIGGALPSLEEDGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSL 438 (559)
Q Consensus 362 ~~~L~~L~l~~~~~~~--~~~-~~l~~l~~L~~L~l~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L 438 (559)
+++|+.|++++|.... .++ ..+..+ ++|++|++++|. +....+. ..+..+++|
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l---------------------~~L~~L~Ls~N~-l~~~~~~--~~~~~l~~L 255 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAAR---------------------VQLQGLDLSHNS-LRDAAGA--PSCDWPSQL 255 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTT---------------------CCCSEEECTTSC-CCSSCCC--SCCCCCTTC
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcC---------------------CCCCEEECCCCc-CCcccch--hhhhhcCCC
Confidence 4455555555553221 111 112233 455555555555 3322211 234455667
Q ss_pred cEEEEeecCCCceeecccccccccccccccccceeeccccccccccccccccCCCcCeEEecCCCCCc
Q 035732 439 RRLTISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSSSIVDLQNLTLLQLWGCPKLK 506 (559)
Q Consensus 439 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~ 506 (559)
+.|++++|. +..++.. +. ++|+.|++++ +.++.+|. +..+++|++|++++ |.++
T Consensus 256 ~~L~Ls~N~--l~~ip~~-------~~--~~L~~L~Ls~-N~l~~~p~-~~~l~~L~~L~L~~-N~l~ 309 (312)
T 1wwl_A 256 NSLNLSFTG--LKQVPKG-------LP--AKLSVLDLSY-NRLDRNPS-PDELPQVGNLSLKG-NPFL 309 (312)
T ss_dssp CEEECTTSC--CSSCCSS-------CC--SEEEEEECCS-SCCCSCCC-TTTSCEEEEEECTT-CTTT
T ss_pred CEEECCCCc--cChhhhh-------cc--CCceEEECCC-CCCCCChh-HhhCCCCCEEeccC-CCCC
Confidence 777776663 3344442 22 6788888888 45666665 67788888888888 4454
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=6.1e-16 Score=146.12 Aligned_cols=177 Identities=19% Similarity=0.231 Sum_probs=92.4
Q ss_pred CCCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCC-CCCCCCCccEE
Q 035732 290 PPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPE-GGLPCAKLTRL 368 (559)
Q Consensus 290 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L 368 (559)
|+++++|+++++......+..+.++++|++|++++|.+....+..+..+++|++|++++|.. ..++. .+..+++|+.|
T Consensus 36 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 36 PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL-QALPIGVFDQLVNLAEL 114 (270)
T ss_dssp CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCC-CCCCTTTTTTCSSCCEE
T ss_pred CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcC-CcCCHhHcccccCCCEE
Confidence 35677777776654444344566666666666666654433333345566666666666533 23332 23445566666
Q ss_pred eccccccccccccccccCCCcceEEecC-CCCCCcCCCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecC
Q 035732 369 EIYDCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEEDGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCD 447 (559)
Q Consensus 369 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~ 447 (559)
++++|......+..+..+++|+.|++++ .+..++. ..+..+++|+.|++++|.
T Consensus 115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------------------------~~~~~l~~L~~L~L~~n~ 168 (270)
T 2o6q_A 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK--------------------------GVFDKLTSLKELRLYNNQ 168 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--------------------------TTTTTCTTCCEEECCSSC
T ss_pred ECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH--------------------------hHccCCcccceeEecCCc
Confidence 6666543333333344555555555544 3433332 134455555555555542
Q ss_pred CCceeecccccccccccccccccceeeccccccccccccc-cccCCCcCeEEecCC
Q 035732 448 DDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSSS-IVDLQNLTLLQLWGC 502 (559)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c 502 (559)
+..++... +..+++|+.|++++| .++.++.. +..+++|+.|+++++
T Consensus 169 --l~~~~~~~------~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 169 --LKRVPEGA------FDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp --CSCCCTTT------TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred --CcEeChhH------hccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCC
Confidence 23333322 445566666666663 44454442 455666777777664
No 76
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.67 E-value=1.2e-15 Score=149.88 Aligned_cols=224 Identities=21% Similarity=0.182 Sum_probs=167.7
Q ss_pred CCCCCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccc-cCCCCCccceeecccccCceecCC-CCCCCCCc
Q 035732 288 NLPPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPS-GLHNLRQLQEISIQICENLVSFPE-GGLPCAKL 365 (559)
Q Consensus 288 ~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L 365 (559)
.+|.++++|++++|......+..+.++++|++|++++|.+.+.++. .|.++++++++...++..+..++. .+..+++|
T Consensus 27 ~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L 106 (350)
T 4ay9_X 27 DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL 106 (350)
T ss_dssp TCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTC
T ss_pred CcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccc
Confidence 3457899999999876554455789999999999999988776654 567888888765555445566644 56778899
Q ss_pred cEEeccccccccccccccccCCCcceEEecC--CCCCCcCC---CCCCCCceeeecCccchhhhhhhcccccccCccccE
Q 035732 366 TRLEIYDCKRLEALPKGLHNLTSLQHLTIGG--ALPSLEED---GLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRR 440 (559)
Q Consensus 366 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~--~l~~~~~~---~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~ 440 (559)
+.|++++|......+..+....++..+++.+ .+..++.. .....++.|++++|. ++.+.. .+....+|++
T Consensus 107 ~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~----~~f~~~~L~~ 181 (350)
T 4ay9_X 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHN----SAFNGTQLDE 181 (350)
T ss_dssp CEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECT----TSSTTEEEEE
T ss_pred ccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCCh----hhccccchhH
Confidence 9999999875444344556677888888876 56665542 233578899999998 553322 3445678999
Q ss_pred EEEeecCCCceeecccccccccccccccccceeeccccccccccccccccCCCcCeEEecCCCCCcccCCCCCCCCceEE
Q 035732 441 LTISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSSSIVDLQNLTLLQLWGCPKLKYFPKKGLPSSLLEL 520 (559)
Q Consensus 441 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L 520 (559)
+++.++. .+..++.+. |..+++|+.|++++ +.++.+|. ..+.+|+.|.+.+|+.++.+|.-.-+++|+.+
T Consensus 182 l~l~~~n-~l~~i~~~~------f~~l~~L~~LdLs~-N~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l 251 (350)
T 4ay9_X 182 LNLSDNN-NLEELPNDV------FHGASGPVILDISR-TRIHSLPS--YGLENLKKLRARSTYNLKKLPTLEKLVALMEA 251 (350)
T ss_dssp EECTTCT-TCCCCCTTT------TTTEECCSEEECTT-SCCCCCCS--SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEE
T ss_pred HhhccCC-cccCCCHHH------hccCcccchhhcCC-CCcCccCh--hhhccchHhhhccCCCcCcCCCchhCcChhhC
Confidence 9998643 466677654 88899999999999 57899987 55889999999999999999985556899999
Q ss_pred EecCCh
Q 035732 521 DIVGCP 526 (559)
Q Consensus 521 ~l~~c~ 526 (559)
++.+..
T Consensus 252 ~l~~~~ 257 (350)
T 4ay9_X 252 SLTYPS 257 (350)
T ss_dssp ECSCHH
T ss_pred cCCCCc
Confidence 997543
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.67 E-value=5.3e-16 Score=147.18 Aligned_cols=198 Identities=21% Similarity=0.193 Sum_probs=148.4
Q ss_pred CCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEeccccccccccccccccCCCcceEEe
Q 035732 315 TSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALPKGLHNLTSLQHLTI 394 (559)
Q Consensus 315 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 394 (559)
++|++|++++|.+....+..+.++++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 47999999998876655567888999999999998544333445677789999999998765555577899999999999
Q ss_pred cC-CCCCCcC--CCCCCCCceeeecCccchhhh-hhhcccccccCccccEEEEeecCCCceeeccccccccccccccccc
Q 035732 395 GG-ALPSLEE--DGLPTNLQLLNIEGNMEIWKS-MIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTALPLLASL 470 (559)
Q Consensus 395 ~~-~l~~~~~--~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L 470 (559)
++ .+..++. ...+++|++|++++|. +... ++ ..+..+++|++|++++|. +..++... +..+++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~---~~~~~l~~L~~L~Ls~N~--l~~~~~~~------~~~l~~L 175 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLP---EYFSNLTNLEHLDLSSNK--IQSIYCTD------LRVLHQM 175 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCC---GGGGGCTTCCEEECCSSC--CCEECGGG------GHHHHTC
T ss_pred CCCCccccCchhcccCCCCCEEECcCCc-cceecCc---hhhccCCCCCEEECCCCC--CCcCCHHH------hhhhhhc
Confidence 88 6666554 5667899999999998 4332 22 367889999999999884 44444332 5555666
Q ss_pred c----eeeccccccccccccccccCCCcCeEEecCCCCCcccCCCCC--CCCceEEEecCCh
Q 035732 471 T----SLGISRFPNLERLSSSIVDLQNLTLLQLWGCPKLKYFPKKGL--PSSLLELDIVGCP 526 (559)
Q Consensus 471 ~----~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~ 526 (559)
+ .|++++ +.+..++.......+|++|++++ +.++.++...+ .++|+.|++++|+
T Consensus 176 ~~l~l~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 176 PLLNLSLDLSL-NPMNFIQPGAFKEIRLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp TTCCEEEECCS-SCCCEECTTSSCSCCEEEEECCS-SCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred cccceeeecCC-CcccccCccccCCCcccEEECCC-CceeecCHhHhcccccccEEEccCCc
Confidence 6 889998 55777776555566899999999 56888887433 6799999999553
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.65 E-value=9.1e-16 Score=142.17 Aligned_cols=198 Identities=18% Similarity=0.176 Sum_probs=139.7
Q ss_pred CCCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccc-cccCCCCCccceeecccccCceecCC-CCCCCCCccE
Q 035732 290 PPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKIL-PSGLHNLRQLQEISIQICENLVSFPE-GGLPCAKLTR 367 (559)
Q Consensus 290 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~ 367 (559)
|.++++|+++++......+..+.++++|++|++++|.....+ +..+.++++|++|++++|..++.++. .+..+++|+.
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 357888888887765555557778888888888888633333 34677888888888887334555554 4556778888
Q ss_pred EeccccccccccccccccCCCcc---eEEecC--CCCCCcC--CCCCCCCc-eeeecCccchhhhhhhcccccccCcccc
Q 035732 368 LEIYDCKRLEALPKGLHNLTSLQ---HLTIGG--ALPSLEE--DGLPTNLQ-LLNIEGNMEIWKSMIERGRGFHRFSSLR 439 (559)
Q Consensus 368 L~l~~~~~~~~~~~~l~~l~~L~---~L~l~~--~l~~~~~--~~~~~~L~-~L~l~~~~~l~~~~~~~~~~~~~l~~L~ 439 (559)
|++++|.. ..+|. +..+++|+ .|++++ .+..++. ...+++|+ +|++++|. ++. ++. ..+.. ++|+
T Consensus 110 L~l~~n~l-~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~-i~~--~~~~~-~~L~ 182 (239)
T 2xwt_C 110 LGIFNTGL-KMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTS-VQG--YAFNG-TKLD 182 (239)
T ss_dssp EEEEEECC-CSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCE-ECT--TTTTT-CEEE
T ss_pred EeCCCCCC-ccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-Ccc-cCH--hhcCC-CCCC
Confidence 88888864 44665 77777777 888887 5666554 45578888 89988887 442 222 24444 7899
Q ss_pred EEEEeecCCCceeecccccccccccccc-cccceeeccccccccccccccccCCCcCeEEecCCCC
Q 035732 440 RLTISRCDDDMVSFPLENKRLGTALPLL-ASLTSLGISRFPNLERLSSSIVDLQNLTLLQLWGCPK 504 (559)
Q Consensus 440 ~L~l~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~ 504 (559)
.|++++|. .+..++... +..+ ++|+.|++++ +.++.+|.. .+++|+.|++.++..
T Consensus 183 ~L~L~~n~-~l~~i~~~~------~~~l~~~L~~L~l~~-N~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 183 AVYLNKNK-YLTVIDKDA------FGGVYSGPSLLDVSQ-TSVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp EEECTTCT-TCCEECTTT------TTTCSBCCSEEECTT-CCCCCCCCT--TCTTCSEEECTTC--
T ss_pred EEEcCCCC-CcccCCHHH------hhccccCCcEEECCC-CccccCChh--HhccCceeeccCccC
Confidence 99999872 144555543 7778 8999999999 667888863 789999999998654
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.65 E-value=2.2e-15 Score=143.60 Aligned_cols=191 Identities=19% Similarity=0.128 Sum_probs=115.3
Q ss_pred ccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCC
Q 035732 257 LEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLH 336 (559)
Q Consensus 257 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 336 (559)
++++++.+ ++++. +|. .+|++++.|++++|......+..+..+++|++|++++|.+.. ++. ..
T Consensus 12 l~~l~~~~-~~l~~-ip~-------------~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~ 74 (290)
T 1p9a_G 12 HLEVNCDK-RNLTA-LPP-------------DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV-DG 74 (290)
T ss_dssp CCEEECTT-SCCSS-CCS-------------CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC-CS
T ss_pred ccEEECCC-CCCCc-CCC-------------CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccC-CC
Confidence 77777766 55554 332 233678888888877666556677788888888888876544 222 25
Q ss_pred CCCccceeecccccCceecCCCCCCCCCccEEeccccccccccccccccCCCcceEEecC-CCCCCcC--CCCCCCCcee
Q 035732 337 NLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEE--DGLPTNLQLL 413 (559)
Q Consensus 337 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~--~~~~~~L~~L 413 (559)
.+++|++|++++|. +..+|..+..+++|+.|++++|......+..|..+++|+.|++++ .+..++. +..+++|+.|
T Consensus 75 ~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 153 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153 (290)
T ss_dssp CCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEE
Confidence 67778888887773 346666666667777777777764433345567777777777776 5655544 2345666666
Q ss_pred eecCccchhhhhhhcccccccCccccEEEEeecCCCceeecccccccccccccccccceeecccc
Q 035732 414 NIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRF 478 (559)
Q Consensus 414 ~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 478 (559)
++++|+ ++.... ..+..+++|+.|++++|. +..++.. +..+.+|+.|+++++
T Consensus 154 ~L~~N~-l~~l~~---~~~~~l~~L~~L~L~~N~--l~~ip~~-------~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 154 SLANNN-LTELPA---GLLNGLENLDTLLLQENS--LYTIPKG-------FFGSHLLPFAFLHGN 205 (290)
T ss_dssp ECTTSC-CSCCCT---TTTTTCTTCCEEECCSSC--CCCCCTT-------TTTTCCCSEEECCSC
T ss_pred ECCCCc-CCccCH---HHhcCcCCCCEEECCCCc--CCccChh-------hcccccCCeEEeCCC
Confidence 666665 332221 234555666666666553 3334332 222345555666553
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.65 E-value=6.6e-16 Score=149.09 Aligned_cols=225 Identities=13% Similarity=0.071 Sum_probs=158.1
Q ss_pred CccEEEEcCCCCccch-HH--hhccCCCCceEEeeecCccccccccC--CCCCccceeecccccCceecC----CCCCCC
Q 035732 292 SLKSLYVYGCSKVESI-AE--RLDNNTSLEKISIKRCGTLKILPSGL--HNLRQLQEISIQICENLVSFP----EGGLPC 362 (559)
Q Consensus 292 ~L~~L~l~~~~~~~~~-~~--~~~~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~~~ 362 (559)
.++.+.+.++...... .. ....+++|++|++++|.+.+..|..+ ..+++|++|++++|......+ .....+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 4777777776543221 11 22345679999999998887777777 789999999999986544322 122356
Q ss_pred CCccEEeccccccccccccccccCCCcceEEecC-CCCC---Cc---CCCCCCCCceeeecCccchhhhhhhcccccccC
Q 035732 363 AKLTRLEIYDCKRLEALPKGLHNLTSLQHLTIGG-ALPS---LE---EDGLPTNLQLLNIEGNMEIWKSMIERGRGFHRF 435 (559)
Q Consensus 363 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~---~~---~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l 435 (559)
++|++|++++|......+..+..+++|++|++++ .+.. ++ ....+++|++|++++|. ++.........+..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcC
Confidence 7899999999987666667888999999999998 5432 21 12467899999999998 442221100135688
Q ss_pred ccccEEEEeecCCCceee-cccccccccccccccccceeeccccccccccccccccCCCcCeEEecCCCCCcccCCCCCC
Q 035732 436 SSLRRLTISRCDDDMVSF-PLENKRLGTALPLLASLTSLGISRFPNLERLSSSIVDLQNLTLLQLWGCPKLKYFPKKGLP 514 (559)
Q Consensus 436 ~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~ 514 (559)
++|++|++++|. +... |... +.+..+++|++|++++ +.++.+|..+ +++|++|++++ |.++.+|....+
T Consensus 224 ~~L~~L~Ls~N~--l~~~~p~~~----~~~~~~~~L~~L~Ls~-N~l~~lp~~~--~~~L~~L~Ls~-N~l~~~~~~~~l 293 (310)
T 4glp_A 224 VQPHSLDLSHNS--LRATVNPSA----PRCMWSSALNSLNLSF-AGLEQVPKGL--PAKLRVLDLSS-NRLNRAPQPDEL 293 (310)
T ss_dssp CCCSSEECTTSC--CCCCCCSCC----SSCCCCTTCCCEECCS-SCCCSCCSCC--CSCCSCEECCS-CCCCSCCCTTSC
T ss_pred CCCCEEECCCCC--CCccchhhH----HhccCcCcCCEEECCC-CCCCchhhhh--cCCCCEEECCC-CcCCCCchhhhC
Confidence 999999999985 3333 3221 0132347999999999 5677888755 48999999999 678888765556
Q ss_pred CCceEEEecCChh
Q 035732 515 SSLLELDIVGCPL 527 (559)
Q Consensus 515 ~~L~~L~l~~c~~ 527 (559)
++|+.|++++|+-
T Consensus 294 ~~L~~L~L~~N~l 306 (310)
T 4glp_A 294 PEVDNLTLDGNPF 306 (310)
T ss_dssp CCCSCEECSSTTT
T ss_pred CCccEEECcCCCC
Confidence 8999999999863
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.64 E-value=2.3e-15 Score=142.22 Aligned_cols=194 Identities=21% Similarity=0.240 Sum_probs=118.1
Q ss_pred CccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCC-CCCCCCccEEec
Q 035732 292 SLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEG-GLPCAKLTRLEI 370 (559)
Q Consensus 292 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l 370 (559)
+.+.++++++.. ..+|..+. +++++|++++|.+....+..+.++++|++|++++|.. +.++.. +..+++|++|++
T Consensus 17 ~~~~l~~~~~~l-~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKL-TAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCC-SSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC-SCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCC-CccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc-CeeChhhhcCCCCCCEEEC
Confidence 345555555432 22332221 3566666666554443333455555555555555532 233332 233445555555
Q ss_pred cccccccccccccccCCCcceEEecCCCCCCcC--CCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCC
Q 035732 371 YDCKRLEALPKGLHNLTSLQHLTIGGALPSLEE--DGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDD 448 (559)
Q Consensus 371 ~~~~~~~~~~~~l~~l~~L~~L~l~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~ 448 (559)
++|. +..++. ...+++|++|++++|. ++...+ ..+..+++|+.|++++|.
T Consensus 93 ~~n~-----------------------l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~---~~~~~l~~L~~L~Ls~n~- 144 (270)
T 2o6q_A 93 TDNK-----------------------LQALPIGVFDQLVNLAELRLDRNQ-LKSLPP---RVFDSLTKLTYLSLGYNE- 144 (270)
T ss_dssp CSSC-----------------------CCCCCTTTTTTCSSCCEEECCSSC-CCCCCT---TTTTTCTTCCEEECCSSC-
T ss_pred CCCc-----------------------CCcCCHhHcccccCCCEEECCCCc-cCeeCH---HHhCcCcCCCEEECCCCc-
Confidence 5543 333322 2334566666666665 332222 256788889999998874
Q ss_pred Cceeecccccccccccccccccceeecccccccccccc-ccccCCCcCeEEecCCCCCcccCCCCC--CCCceEEEecCC
Q 035732 449 DMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSS-SIVDLQNLTLLQLWGCPKLKYFPKKGL--PSSLLELDIVGC 525 (559)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c 525 (559)
+..++... +..+++|+.|++++| .+..++. .+..+++|++|++++ +.++.++...+ .++|+.|++++|
T Consensus 145 -l~~~~~~~------~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 145 -LQSLPKGV------FDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDN-NQLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp -CCCCCTTT------TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred -CCccCHhH------ccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCC-CcCCcCCHHHhccccCCCEEEecCC
Confidence 44555533 778899999999995 5666665 467899999999999 57888887543 579999999988
Q ss_pred h
Q 035732 526 P 526 (559)
Q Consensus 526 ~ 526 (559)
|
T Consensus 216 ~ 216 (270)
T 2o6q_A 216 P 216 (270)
T ss_dssp C
T ss_pred C
Confidence 6
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.64 E-value=1.9e-15 Score=143.99 Aligned_cols=193 Identities=17% Similarity=0.140 Sum_probs=124.7
Q ss_pred CCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEec
Q 035732 291 PSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEI 370 (559)
Q Consensus 291 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 370 (559)
++++++++.++. +..+|..+ .++++.|++++|.+....+..+..+++|++|++++|.. +.++.. ..+++|+.|++
T Consensus 10 ~~l~~l~~~~~~-l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 10 ASHLEVNCDKRN-LTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp TTCCEEECTTSC-CSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CEEECC-SCCTTCCEEEC
T ss_pred CCccEEECCCCC-CCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc-CcccCC-CCCCcCCEEEC
Confidence 578888888765 34444333 26788888888887666667788888888888888753 444443 45668888888
Q ss_pred cccccccccccccccCCCcceEEecC-CCCCCcC--CCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecC
Q 035732 371 YDCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEE--DGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCD 447 (559)
Q Consensus 371 ~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~ 447 (559)
++|. +..+|..+..+++|+.|++++ .++.++. +..+++|++|++++|. +....+ ..+..+++|+.|++++|.
T Consensus 85 s~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~---~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 85 SHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPP---GLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp CSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCT---TTTTTCTTCCEEECTTSC
T ss_pred CCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccCh---hhcccccCCCEEECCCCc
Confidence 8875 456777777778888888877 6666543 3455677777777766 332222 245566666666666653
Q ss_pred CCceeecccccccccccccccccceeeccccccccccccccccCCCcCeEEecCC
Q 035732 448 DDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSSSIVDLQNLTLLQLWGC 502 (559)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c 502 (559)
+..++.+. +..+++|+.|++++ +.++.+|.++...++|+.|+++++
T Consensus 160 --l~~l~~~~------~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 160 --LTELPAGL------LNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp --CSCCCTTT------TTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSC
T ss_pred --CCccCHHH------hcCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCCC
Confidence 33444432 45556666666666 445566655555556666666653
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.63 E-value=1.5e-15 Score=146.28 Aligned_cols=193 Identities=18% Similarity=0.229 Sum_probs=148.2
Q ss_pred CCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEec
Q 035732 291 PSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEI 370 (559)
Q Consensus 291 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 370 (559)
++|++|++.++... .++ .+..+++|++|++++|.+.. ++. +..+++|++|++++|. +..++ .+..+++|+.|++
T Consensus 41 ~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEEC
Confidence 58999999988643 344 67889999999999987655 333 8889999999999985 44454 4566779999999
Q ss_pred cccccccccccccccCCCcceEEecC-CCCCCcCCCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCCC
Q 035732 371 YDCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEEDGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDD 449 (559)
Q Consensus 371 ~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 449 (559)
++|.. ..++. +..+++|+.|++++ .+..++....+++|++|++++|. +.+.. .+..+++|+.|++++|.
T Consensus 115 ~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~-l~~~~-----~l~~l~~L~~L~l~~n~-- 184 (308)
T 1h6u_A 115 TSTQI-TDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQ-VSDLT-----PLANLSKLTTLKADDNK-- 184 (308)
T ss_dssp TTSCC-CCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSC-CCCCG-----GGTTCTTCCEEECCSSC--
T ss_pred CCCCC-CCchh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCc-CCCCh-----hhcCCCCCCEEECCCCc--
Confidence 99874 44543 88899999999998 88877777778899999999997 44321 27788999999999874
Q ss_pred ceeecccccccccccccccccceeeccccccccccccccccCCCcCeEEecCCCCCcccCC
Q 035732 450 MVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSSSIVDLQNLTLLQLWGCPKLKYFPK 510 (559)
Q Consensus 450 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 510 (559)
+..++. +..+++|+.|++++| .+..++. +..+++|+.|++++| .++..|.
T Consensus 185 l~~~~~--------l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~l~~N-~i~~~~~ 234 (308)
T 1h6u_A 185 ISDISP--------LASLPNLIEVHLKNN-QISDVSP-LANTSNLFIVTLTNQ-TITNQPV 234 (308)
T ss_dssp CCCCGG--------GGGCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEEEEEE-EEECCCE
T ss_pred cCcChh--------hcCCCCCCEEEccCC-ccCcccc-ccCCCCCCEEEccCC-eeecCCe
Confidence 334433 556789999999995 5666653 678899999999994 5666554
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.60 E-value=7.8e-15 Score=138.64 Aligned_cols=90 Identities=13% Similarity=0.061 Sum_probs=57.1
Q ss_pred CCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEec
Q 035732 291 PSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEI 370 (559)
Q Consensus 291 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 370 (559)
++|++|++++|......+..+..+++|++|++++|.+....+..+..+++|++|++++|+... .+++|+.+++
T Consensus 157 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~ 229 (272)
T 3rfs_A 157 TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSE 229 (272)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHH
T ss_pred ccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHH
Confidence 356666666655443334445667777777777776665555556777788888887775432 2446777777
Q ss_pred cccccccccccccccCC
Q 035732 371 YDCKRLEALPKGLHNLT 387 (559)
Q Consensus 371 ~~~~~~~~~~~~l~~l~ 387 (559)
+.|.....+|.++..++
T Consensus 230 ~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 230 WINKHSGVVRNSAGSVA 246 (272)
T ss_dssp HHHHTGGGBBCTTSCBC
T ss_pred HHHhCCCcccCcccccC
Confidence 77776666776665544
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.59 E-value=1e-14 Score=137.74 Aligned_cols=149 Identities=21% Similarity=0.167 Sum_probs=72.3
Q ss_pred CCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCC-CCCCCCCccEEe
Q 035732 291 PSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPE-GGLPCAKLTRLE 369 (559)
Q Consensus 291 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~ 369 (559)
++|++|++++|.... + ..+..+++|++|++++|.+....+..+..+++|++|++++|.. ..++. .+..+++|+.|+
T Consensus 63 ~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~ 139 (272)
T 3rfs_A 63 PNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL-QSLPDGVFDKLTNLTYLN 139 (272)
T ss_dssp TTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcC-CccCHHHhccCCCCCEEE
Confidence 456666666554332 2 2455556666666666554443334445556666666665533 22322 234455566666
Q ss_pred ccccccccccccccccCCCcceEEecC-CCCCCcC--CCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeec
Q 035732 370 IYDCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEE--DGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRC 446 (559)
Q Consensus 370 l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~ 446 (559)
+++|......+..+..+++|+.|++++ .+..++. ...+++|++|++++|. +....+ ..+..+++|+.|++++|
T Consensus 140 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~---~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPD---GVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCT---TTTTTCTTCCEEECCSS
T ss_pred CCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc-CCccCH---HHHhCCcCCCEEEccCC
Confidence 665543322223345555555555555 4444433 2334555555555554 322221 13444455555555444
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.59 E-value=1.9e-15 Score=145.88 Aligned_cols=176 Identities=18% Similarity=0.134 Sum_probs=92.4
Q ss_pred CCccEEEEcCCCCccchH----HhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCcee--cCC--CCCCC
Q 035732 291 PSLKSLYVYGCSKVESIA----ERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVS--FPE--GGLPC 362 (559)
Q Consensus 291 ~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~--~~~~~ 362 (559)
++|++|++++|......+ ..+..+++|++|++++|.+....+..+..+++|++|++++|..... ++. ....+
T Consensus 117 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 196 (310)
T 4glp_A 117 LALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKF 196 (310)
T ss_dssp BCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSS
T ss_pred CCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcC
Confidence 466667776665443221 2334566666666666666554555566666666666666643321 211 12344
Q ss_pred CCccEEecccccccccccc----ccccCCCcceEEecCCCCCCcCCCCCCCCceeeecCccchhhhhhhccccccc---C
Q 035732 363 AKLTRLEIYDCKRLEALPK----GLHNLTSLQHLTIGGALPSLEEDGLPTNLQLLNIEGNMEIWKSMIERGRGFHR---F 435 (559)
Q Consensus 363 ~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~---l 435 (559)
++|++|++++|.. +.++. .+..+++|++|++ ++|. +.+..+. .+.. +
T Consensus 197 ~~L~~L~Ls~N~l-~~l~~~~~~l~~~l~~L~~L~L---------------------s~N~-l~~~~p~---~~~~~~~~ 250 (310)
T 4glp_A 197 PAIQNLALRNTGM-ETPTGVCAALAAAGVQPHSLDL---------------------SHNS-LRATVNP---SAPRCMWS 250 (310)
T ss_dssp CCCCSCBCCSSCC-CCHHHHHHHHHHHTCCCSSEEC---------------------TTSC-CCCCCCS---CCSSCCCC
T ss_pred CCCCEEECCCCCC-CchHHHHHHHHhcCCCCCEEEC---------------------CCCC-CCccchh---hHHhccCc
Confidence 5666666666643 22222 1234455555555 4444 2222111 1222 2
Q ss_pred ccccEEEEeecCCCceeecccccccccccccccccceeeccccccccccccccccCCCcCeEEecCCCCCc
Q 035732 436 SSLRRLTISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSSSIVDLQNLTLLQLWGCPKLK 506 (559)
Q Consensus 436 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~ 506 (559)
++|++|++++|. +..++.. +. ++|+.|++++ +.++.+|. +..+++|++|++++ |.++
T Consensus 251 ~~L~~L~Ls~N~--l~~lp~~-------~~--~~L~~L~Ls~-N~l~~~~~-~~~l~~L~~L~L~~-N~l~ 307 (310)
T 4glp_A 251 SALNSLNLSFAG--LEQVPKG-------LP--AKLRVLDLSS-NRLNRAPQ-PDELPEVDNLTLDG-NPFL 307 (310)
T ss_dssp TTCCCEECCSSC--CCSCCSC-------CC--SCCSCEECCS-CCCCSCCC-TTSCCCCSCEECSS-TTTS
T ss_pred CcCCEEECCCCC--CCchhhh-------hc--CCCCEEECCC-CcCCCCch-hhhCCCccEEECcC-CCCC
Confidence 466666666653 2334432 22 6777777777 44565544 46678888888888 3443
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.59 E-value=3e-16 Score=153.52 Aligned_cols=199 Identities=16% Similarity=0.155 Sum_probs=101.8
Q ss_pred CccEEEEcCCCCccchHHhhccCCCCceEEeeecCcccc-ccccCCCCCccceeecccccCceecCCCCCCCCCccEEec
Q 035732 292 SLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKI-LPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEI 370 (559)
Q Consensus 292 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 370 (559)
+++.|++.++......+ .+..+++|++|++++|.+... ++..+..+++|++|++++|......+..+..+++|++|++
T Consensus 71 ~l~~L~l~~n~l~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred cceEEEcCCccccccch-hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 56666666654333322 244566666666666654433 4555566666666666666433233333344556666666
Q ss_pred ccccccc--ccccccccCCCcceEEecC--CCCC--CcC-CCCCC-CCceeeecCcc-chh-hhhhhcccccccCccccE
Q 035732 371 YDCKRLE--ALPKGLHNLTSLQHLTIGG--ALPS--LEE-DGLPT-NLQLLNIEGNM-EIW-KSMIERGRGFHRFSSLRR 440 (559)
Q Consensus 371 ~~~~~~~--~~~~~l~~l~~L~~L~l~~--~l~~--~~~-~~~~~-~L~~L~l~~~~-~l~-~~~~~~~~~~~~l~~L~~ 440 (559)
++|..+. .++..+..+++|++|++++ .++. ++. ...++ +|++|++++|. .++ ..++. .+..+++|+.
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~---~~~~~~~L~~ 226 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST---LVRRCPNLVH 226 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH---HHHHCTTCSE
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH---HHhhCCCCCE
Confidence 6664333 2444455666666666665 3332 111 22345 66666666663 232 22222 3455666666
Q ss_pred EEEeecCC-Cceeecccccccccccccccccceeecccccccccc-ccccccCCCcCeEEecCC
Q 035732 441 LTISRCDD-DMVSFPLENKRLGTALPLLASLTSLGISRFPNLERL-SSSIVDLQNLTLLQLWGC 502 (559)
Q Consensus 441 L~l~~~~~-~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~c 502 (559)
|++++|.. ....+. .+..+++|+.|++++|..+... ...+..+++|++|++++|
T Consensus 227 L~l~~~~~l~~~~~~--------~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 227 LDLSDSVMLKNDCFQ--------EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp EECTTCTTCCGGGGG--------GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred EeCCCCCcCCHHHHH--------HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 66666531 111111 1444566666666665422211 113445666666666665
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.57 E-value=1.4e-14 Score=139.46 Aligned_cols=192 Identities=15% Similarity=0.171 Sum_probs=145.0
Q ss_pred CccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccC
Q 035732 256 LLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGL 335 (559)
Q Consensus 256 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 335 (559)
+|++|++.++ .++. ++ .+ ..+ ++|++|++++|.... ++. +..+++|++|++++|.+.. + ..+
T Consensus 42 ~L~~L~l~~~-~i~~-l~------~~-----~~l-~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~-~~~ 103 (308)
T 1h6u_A 42 GITTLSAFGT-GVTT-IE------GV-----QYL-NNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-V-SAI 103 (308)
T ss_dssp TCCEEECTTS-CCCC-CT------TG-----GGC-TTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-C-GGG
T ss_pred CcCEEEeeCC-CccC-ch------hh-----hcc-CCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-c-hhh
Confidence 5999999984 5554 22 12 333 689999999987544 333 8899999999999997655 3 367
Q ss_pred CCCCccceeecccccCceecCCCCCCCCCccEEeccccccccccccccccCCCcceEEecC-CCCCCcCCCCCCCCceee
Q 035732 336 HNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEEDGLPTNLQLLN 414 (559)
Q Consensus 336 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~ 414 (559)
..+++|++|++++|.. +.++. +..+++|+.|++++|.. ..++. +..+++|+.|++++ .+..++....+++|++|+
T Consensus 104 ~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~ 179 (308)
T 1h6u_A 104 AGLQSIKTLDLTSTQI-TDVTP-LAGLSNLQVLYLDLNQI-TNISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLK 179 (308)
T ss_dssp TTCTTCCEEECTTSCC-CCCGG-GTTCTTCCEEECCSSCC-CCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred cCCCCCCEEECCCCCC-CCchh-hcCCCCCCEEECCCCcc-CcCcc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEE
Confidence 8899999999999854 44543 66678999999999864 44443 88899999999999 888877777889999999
Q ss_pred ecCccchhhhhhhcccccccCccccEEEEeecCCCceeecccccccccccccccccceeecccccccccccc
Q 035732 415 IEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSS 486 (559)
Q Consensus 415 l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 486 (559)
+++|. +.+.. .+..+++|+.|++++|. +..++. +..+++|+.|++++|+ +...|.
T Consensus 180 l~~n~-l~~~~-----~l~~l~~L~~L~L~~N~--l~~~~~--------l~~l~~L~~L~l~~N~-i~~~~~ 234 (308)
T 1h6u_A 180 ADDNK-ISDIS-----PLASLPNLIEVHLKNNQ--ISDVSP--------LANTSNLFIVTLTNQT-ITNQPV 234 (308)
T ss_dssp CCSSC-CCCCG-----GGGGCTTCCEEECTTSC--CCBCGG--------GTTCTTCCEEEEEEEE-EECCCE
T ss_pred CCCCc-cCcCh-----hhcCCCCCCEEEccCCc--cCcccc--------ccCCCCCCEEEccCCe-eecCCe
Confidence 99998 44322 26789999999999884 334432 5677899999999954 566554
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.57 E-value=2.2e-14 Score=140.77 Aligned_cols=220 Identities=15% Similarity=0.125 Sum_probs=132.1
Q ss_pred CCccEEEeccccCccEEeccCchhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEe-cccCCCCccc-
Q 035732 65 PKLEELEIKNIKNETYIWKSHDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLG-LTSCHGLVKL- 142 (559)
Q Consensus 65 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~-l~~~~~l~~~- 142 (559)
+++++|+++++ +++. ++...|.++++|++|+|+++.-++.++.+ .+..+ +++.++. +++|.. ..+
T Consensus 30 ~~l~~L~Ls~N-~i~~---i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~----~f~~L----~~l~~~l~~~~N~l-~~l~ 96 (350)
T 4ay9_X 30 RNAIELRFVLT-KLRV---IQKGAFSGFGDLEKIEISQNDVLEVIEAD----VFSNL----PKLHEIRIEKANNL-LYIN 96 (350)
T ss_dssp TTCSEEEEESC-CCSE---ECTTSSTTCTTCCEEEEECCTTCCEECTT----SBCSC----TTCCEEEEEEETTC-CEEC
T ss_pred CCCCEEEccCC-cCCC---cCHHHHcCCCCCCEEECcCCCCCCccChh----Hhhcc----hhhhhhhcccCCcc-cccC
Confidence 57899999887 5666 77777888999999999987545556554 23444 6666544 444444 554
Q ss_pred CCCCCCCCccceeeccCCCCccccCC--CCCCCCccEEEecccCCCcccCcccccCCCCCccEEecCCCCCccccccc-c
Q 035732 143 PQSSFSLSSLREIEIYNCSSLVSFPE--VALPSKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCRWLTFIAAV-Q 219 (559)
Q Consensus 143 ~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~ 219 (559)
|..+..+++|++|++++|. +..++. +....++..+++.++..+..++...+......++.|++++|. ++.++.. .
T Consensus 97 ~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~f 174 (350)
T 4ay9_X 97 PEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAF 174 (350)
T ss_dssp TTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTSS
T ss_pred chhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChhhc
Confidence 5667888999999998874 444443 334556778888777667777765442323457788888774 5555443 3
Q ss_pred CCCCcceEEeecccCccccchhhccccccccccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEc
Q 035732 220 LPSSLKKLQIRRCDNIRTLTAEEGIQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVY 299 (559)
Q Consensus 220 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~ 299 (559)
...+|+.+.+.+++.++.++...+.. + ++|+.|++++ ++++. +|. ..+ .+|++|.+.
T Consensus 175 ~~~~L~~l~l~~~n~l~~i~~~~f~~------l--~~L~~LdLs~-N~l~~-lp~------------~~~-~~L~~L~~l 231 (350)
T 4ay9_X 175 NGTQLDELNLSDNNNLEELPNDVFHG------A--SGPVILDISR-TRIHS-LPS------------YGL-ENLKKLRAR 231 (350)
T ss_dssp TTEEEEEEECTTCTTCCCCCTTTTTT------E--ECCSEEECTT-SCCCC-CCS------------SSC-TTCCEEECT
T ss_pred cccchhHHhhccCCcccCCCHHHhcc------C--cccchhhcCC-CCcCc-cCh------------hhh-ccchHhhhc
Confidence 34566666666666666666543321 1 2366666666 45554 332 111 345555555
Q ss_pred CCCCccchHHhhccCCCCceEEee
Q 035732 300 GCSKVESIAERLDNNTSLEKISIK 323 (559)
Q Consensus 300 ~~~~~~~~~~~~~~l~~L~~L~l~ 323 (559)
++..++.+| .+.++++|+.+++.
T Consensus 232 ~~~~l~~lP-~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 232 STYNLKKLP-TLEKLVALMEASLT 254 (350)
T ss_dssp TCTTCCCCC-CTTTCCSCCEEECS
T ss_pred cCCCcCcCC-CchhCcChhhCcCC
Confidence 544444443 23444444444443
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.55 E-value=3.7e-14 Score=132.30 Aligned_cols=171 Identities=16% Similarity=0.116 Sum_probs=113.8
Q ss_pred ccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCC
Q 035732 257 LEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLH 336 (559)
Q Consensus 257 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 336 (559)
.+++++.+ ..++. +|. .+|+++++|++++|......+..+.++++|++|++++|.+....+..+.
T Consensus 16 ~~~l~~~~-~~l~~-~p~-------------~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 80 (251)
T 3m19_A 16 KKEVDCQG-KSLDS-VPS-------------GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD 80 (251)
T ss_dssp GTEEECTT-CCCSS-CCS-------------CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred CeEEecCC-CCccc-cCC-------------CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc
Confidence 66777776 45554 332 3446788999988877666666778888888888888877766666678
Q ss_pred CCCccceeecccccCceecCCCCCCCCCccEEeccccccccccccccccCCCcceEEecC-CCCCCcC--CCCCCCCcee
Q 035732 337 NLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEE--DGLPTNLQLL 413 (559)
Q Consensus 337 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~--~~~~~~L~~L 413 (559)
.+++|++|++++|......+..+..+++|+.|++++|......+..+..+++|++|++++ .+..++. +..+++|++|
T Consensus 81 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 160 (251)
T 3m19_A 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTL 160 (251)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEE
Confidence 888888888888754333333455677888888888764433333457777777777777 6666554 3455677777
Q ss_pred eecCccchhhhhhhcccccccCccccEEEEeec
Q 035732 414 NIEGNMEIWKSMIERGRGFHRFSSLRRLTISRC 446 (559)
Q Consensus 414 ~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~ 446 (559)
++++|. +....+ ..+..+++|+.|++++|
T Consensus 161 ~L~~N~-l~~~~~---~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 161 SLSTNQ-LQSVPH---GAFDRLGKLQTITLFGN 189 (251)
T ss_dssp ECCSSC-CSCCCT---TTTTTCTTCCEEECCSC
T ss_pred ECCCCc-CCccCH---HHHhCCCCCCEEEeeCC
Confidence 777766 332222 24556666666666665
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.55 E-value=3.1e-15 Score=146.27 Aligned_cols=203 Identities=15% Similarity=0.163 Sum_probs=97.6
Q ss_pred CceeEEecccCCCCcccCCCCCCCCccceeeccCCCCccc-cC-CCCCCCCccEEEecccCCCcccCcccccCCCCCccE
Q 035732 126 CRLEYLGLTSCHGLVKLPQSSFSLSSLREIEIYNCSSLVS-FP-EVALPSKLKKIRISYCGALKSLPEAWMCDTNSSLEI 203 (559)
Q Consensus 126 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 203 (559)
++++.|++++|.. ...+..+..+++|++|++++|..... ++ .+..+++|++|++++|......+..+ ..+++|++
T Consensus 70 ~~l~~L~l~~n~l-~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l--~~~~~L~~ 146 (336)
T 2ast_B 70 QGVIAFRCPRSFM-DQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL--AKNSNLVR 146 (336)
T ss_dssp TTCSEEECTTCEE-CSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH--TTCTTCSE
T ss_pred ccceEEEcCCccc-cccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHH--hcCCCCCE
Confidence 5666777766643 33333355566677777666643222 33 24556666666666665222222222 22455555
Q ss_pred EecCCCCCccc--ccc-ccCCCCcceEEeecccCccccchhhccccccccccccCCccEEEEecCCCccccccCCCCCcc
Q 035732 204 LNIEHCRWLTF--IAA-VQLPSSLKKLQIRRCDNIRTLTAEEGIQCSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPAT 280 (559)
Q Consensus 204 L~l~~~~~~~~--~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 280 (559)
|++++|..++. ++. ...+++ |++|++++|..++. ..++..
T Consensus 147 L~L~~~~~l~~~~l~~~~~~~~~---------------------------------L~~L~l~~~~~l~~----~~~~~~ 189 (336)
T 2ast_B 147 LNLSGCSGFSEFALQTLLSSCSR---------------------------------LDELNLSWCFDFTE----KHVQVA 189 (336)
T ss_dssp EECTTCBSCCHHHHHHHHHHCTT---------------------------------CCEEECCCCTTCCH----HHHHHH
T ss_pred EECCCCCCCCHHHHHHHHhcCCC---------------------------------CCEEcCCCCCCcCh----HHHHHH
Confidence 55555532321 111 122333 44444444323321 000111
Q ss_pred ccccccCCCCCCccEEEEcCCC--Cc-cchHHhhccCCCCceEEeeecC-ccccccccCCCCCccceeecccccCceec-
Q 035732 281 LESLEVGNLPPSLKSLYVYGCS--KV-ESIAERLDNNTSLEKISIKRCG-TLKILPSGLHNLRQLQEISIQICENLVSF- 355 (559)
Q Consensus 281 ~~~l~~~~l~~~L~~L~l~~~~--~~-~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~- 355 (559)
+ ..+|.+|++|++++|. .. ..++..+.++++|++|++++|. .....+..+..+++|++|++++|..+...
T Consensus 190 ~-----~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 264 (336)
T 2ast_B 190 V-----AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET 264 (336)
T ss_dssp H-----HHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG
T ss_pred H-----HhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHH
Confidence 1 1221256666666653 22 3345555666777777777766 33344555566666666666666422110
Q ss_pred CCCCCCCCCccEEecccc
Q 035732 356 PEGGLPCAKLTRLEIYDC 373 (559)
Q Consensus 356 ~~~~~~~~~L~~L~l~~~ 373 (559)
...+..+++|+.|++++|
T Consensus 265 ~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 265 LLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGGCTTCCEEECTTS
T ss_pred HHHHhcCCCCCEEeccCc
Confidence 012334556666666665
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.53 E-value=4.2e-14 Score=131.91 Aligned_cols=170 Identities=21% Similarity=0.224 Sum_probs=77.6
Q ss_pred CCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEeccccccccccccccccCCCcceEEec
Q 035732 316 SLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALPKGLHNLTSLQHLTIG 395 (559)
Q Consensus 316 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 395 (559)
..++++++++.+. .+|..+. ++++.|++++|......+..+..+++|++|++++|......+..+..+++|+.|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3455555554332 3444332 456666666654333333344455566666666665443334445555666666665
Q ss_pred C-CCCCCcC--CCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCCCceeecccccccccccccccccce
Q 035732 396 G-ALPSLEE--DGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTALPLLASLTS 472 (559)
Q Consensus 396 ~-~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 472 (559)
+ .+..++. ...+++|++|++++|. ++...+ ..+..+++|+.|++++|. +..++... +..+++|+.
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~---~~~~~l~~L~~L~Ls~N~--l~~~~~~~------~~~l~~L~~ 159 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPS---GVFDRLTKLKELRLNTNQ--LQSIPAGA------FDKLTNLQT 159 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT---TTTTTCTTCCEEECCSSC--CCCCCTTT------TTTCTTCCE
T ss_pred CCcccccChhHhcccCCCCEEEcCCCc-CCCcCh---hHhccCCcccEEECcCCc--CCccCHHH------cCcCcCCCE
Confidence 5 4444432 2334555555555554 222111 123444455555554442 22222211 334444444
Q ss_pred eecccccccccccc-ccccCCCcCeEEecC
Q 035732 473 LGISRFPNLERLSS-SIVDLQNLTLLQLWG 501 (559)
Q Consensus 473 L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~ 501 (559)
|++++| .+..++. .+..+++|+.|++++
T Consensus 160 L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 160 LSLSTN-QLQSVPHGAFDRLGKLQTITLFG 188 (251)
T ss_dssp EECCSS-CCSCCCTTTTTTCTTCCEEECCS
T ss_pred EECCCC-cCCccCHHHHhCCCCCCEEEeeC
Confidence 444442 2333322 233444444444444
No 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.48 E-value=2.9e-14 Score=140.76 Aligned_cols=119 Identities=11% Similarity=0.064 Sum_probs=67.4
Q ss_pred chhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccC-ceeEEecccCCCCcccCCCCCCC-----CccceeeccC
Q 035732 86 DELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSC-RLEYLGLTSCHGLVKLPQSSFSL-----SSLREIEIYN 159 (559)
Q Consensus 86 ~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~-~L~~L~l~~~~~l~~~~~~~~~l-----~~L~~L~l~~ 159 (559)
+.++...++|++|++++| .++..+...+...+..+ + +|++|++++|......+..+..+ ++|++|++++
T Consensus 15 ~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~----~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 89 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANT----PASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSG 89 (362)
T ss_dssp HHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTC----CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCS
T ss_pred HHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhC----CCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcC
Confidence 344444556888888876 57776665444555555 6 78888888875432323333332 7777888877
Q ss_pred CCCccccCC-----CCCC-CCccEEEecccCCCcccCccccc---CC-CCCccEEecCCCC
Q 035732 160 CSSLVSFPE-----VALP-SKLKKIRISYCGALKSLPEAWMC---DT-NSSLEILNIEHCR 210 (559)
Q Consensus 160 ~~~~~~~~~-----~~~~-~~L~~L~l~~~~~~~~~~~~~~~---~~-~~~L~~L~l~~~~ 210 (559)
|......+. +..+ ++|++|++++|. ++..+...++ .. .++|++|++++|.
T Consensus 90 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 90 NFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGND 149 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred CcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence 753322221 2233 677777777776 4433332111 11 2467777777763
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.47 E-value=3.3e-15 Score=149.05 Aligned_cols=235 Identities=13% Similarity=0.091 Sum_probs=137.1
Q ss_pred CCccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEcCCCCc---cchHH-------hhccCCCCceEEeee
Q 035732 255 SLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKV---ESIAE-------RLDNNTSLEKISIKR 324 (559)
Q Consensus 255 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~~~~~---~~~~~-------~~~~l~~L~~L~l~~ 324 (559)
++|++|+++++ .+... ....++..+ ..+ ++|++|++++|... ..+|. .+..+++|++|++++
T Consensus 32 ~~L~~L~L~~n-~i~~~-~~~~l~~~l-----~~~-~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 32 DSVKEIVLSGN-TIGTE-AARWLSENI-----ASK-KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp SCCCEEECTTS-EECHH-HHHHHHHTT-----TTC-TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred CCccEEECCCC-CCCHH-HHHHHHHHH-----HhC-CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 34888888873 44431 101111111 233 57888888876321 12232 346778888888888
Q ss_pred cCccc----cccccCCCCCccceeecccccCcee----cCCCCCCC---------CCccEEeccccccc-cccc---ccc
Q 035732 325 CGTLK----ILPSGLHNLRQLQEISIQICENLVS----FPEGGLPC---------AKLTRLEIYDCKRL-EALP---KGL 383 (559)
Q Consensus 325 ~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~---------~~L~~L~l~~~~~~-~~~~---~~l 383 (559)
|.+.. .++..+..+++|++|++++|..... ++.....+ ++|+.|++++|... ..++ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 87665 3566667788888888888754211 11111111 57888888887653 2333 355
Q ss_pred ccCCCcceEEecC-CCCC------Cc-CCCCCCCCceeeecCccchhhh-hhhcccccccCccccEEEEeecCCCce---
Q 035732 384 HNLTSLQHLTIGG-ALPS------LE-EDGLPTNLQLLNIEGNMEIWKS-MIERGRGFHRFSSLRRLTISRCDDDMV--- 451 (559)
Q Consensus 384 ~~l~~L~~L~l~~-~l~~------~~-~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~--- 451 (559)
..+++|+.|++++ .+.. ++ ....+++|++|++++|. +++. ....+..+..+++|+.|++++|...-.
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 6777888888877 5551 22 34456788888888887 4311 111112567778888888887742211
Q ss_pred eeccccccccccc--ccccccceeeccccccccc-----ccccc-ccCCCcCeEEecCCCCCcc
Q 035732 452 SFPLENKRLGTAL--PLLASLTSLGISRFPNLER-----LSSSI-VDLQNLTLLQLWGCPKLKY 507 (559)
Q Consensus 452 ~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~l~~-----~~~~~-~~~~~L~~L~l~~c~~l~~ 507 (559)
.++. .+ ..+++|+.|++++|. +.. ++..+ ..+++|++|++++| .++.
T Consensus 263 ~l~~-------~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N-~l~~ 317 (386)
T 2ca6_A 263 AVVD-------AFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGN-RFSE 317 (386)
T ss_dssp HHHH-------HHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTS-BSCT
T ss_pred HHHH-------HHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCC-cCCc
Confidence 0111 12 225778888888854 443 66555 45788888888884 4444
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.46 E-value=3.1e-15 Score=149.18 Aligned_cols=182 Identities=15% Similarity=0.092 Sum_probs=101.0
Q ss_pred CCccEEEEcCCCCcc----chHHhhccCCCCceEEeeecCcccc----ccccCCCC---------CccceeecccccCc-
Q 035732 291 PSLKSLYVYGCSKVE----SIAERLDNNTSLEKISIKRCGTLKI----LPSGLHNL---------RQLQEISIQICENL- 352 (559)
Q Consensus 291 ~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l---------~~L~~L~l~~~~~~- 352 (559)
++|++|++++|.... .++..+..+++|++|++++|.+... ++..+..+ ++|++|++++|...
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~ 173 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence 467777777776554 3556667777777777777765432 22222333 67777777776532
Q ss_pred eecC---CCCCCCCCccEEecccccccc-----ccccccccCCCcceEEecC-CC-----CCCcC-CCCCCCCceeeecC
Q 035732 353 VSFP---EGGLPCAKLTRLEIYDCKRLE-----ALPKGLHNLTSLQHLTIGG-AL-----PSLEE-DGLPTNLQLLNIEG 417 (559)
Q Consensus 353 ~~~~---~~~~~~~~L~~L~l~~~~~~~-----~~~~~l~~l~~L~~L~l~~-~l-----~~~~~-~~~~~~L~~L~l~~ 417 (559)
..++ ..+..+++|+.|++++|.... ..+..+..+++|+.|++++ .+ ..++. ...+++|++|++++
T Consensus 174 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~ 253 (386)
T 2ca6_A 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 253 (386)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC
Confidence 1222 223344577777777775431 2233666777777777776 44 22222 34456777777777
Q ss_pred ccchhhhh-hhccccc--ccCccccEEEEeecCCCce---eecccccccccccccccccceeeccccc
Q 035732 418 NMEIWKSM-IERGRGF--HRFSSLRRLTISRCDDDMV---SFPLENKRLGTALPLLASLTSLGISRFP 479 (559)
Q Consensus 418 ~~~l~~~~-~~~~~~~--~~l~~L~~L~l~~~~~~~~---~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 479 (559)
|. +.+.. ...+..+ ..+++|+.|++++|..... .++... ...+++|+.|++++|+
T Consensus 254 n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l------~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 254 CL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI------DEKMPDLLFLELNGNR 314 (386)
T ss_dssp CC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH------HHHCTTCCEEECTTSB
T ss_pred CC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH------HhcCCCceEEEccCCc
Confidence 76 33321 1111133 2367777777777642211 122211 1345777777777754
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.46 E-value=2.1e-13 Score=129.92 Aligned_cols=175 Identities=18% Similarity=0.230 Sum_probs=130.9
Q ss_pred hccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEeccccccccccccccccCCCcc
Q 035732 311 LDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALPKGLHNLTSLQ 390 (559)
Q Consensus 311 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 390 (559)
...+++|+.|++++|.+.. + ..+..+++|++|++++|.. +.++. +..+++|+.|++++|.. ..++ .+..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~-~-~~~~~l~~L~~L~L~~n~l-~~~~~-l~~l~~L~~L~l~~n~l-~~~~-~l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKS-V-QGIQYLPNVTKLFLNGNKL-TDIKP-LANLKNLGWLFLDENKV-KDLS-SLKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSSCC-CCGG-GGTTCTTCC
T ss_pred hhhcCcccEEEccCCCccc-C-hhHhcCCCCCEEEccCCcc-CCCcc-cccCCCCCEEECCCCcC-CCCh-hhccCCCCC
Confidence 3467889999999886544 3 3477889999999999854 44444 66677999999999864 4444 488889999
Q ss_pred eEEecC-CCCCCcCCCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCCCceeecccccccccccccccc
Q 035732 391 HLTIGG-ALPSLEEDGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTALPLLAS 469 (559)
Q Consensus 391 ~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 469 (559)
.|++++ .+..++....+++|++|++++|. +... ..+..+++|+.|++++|. +..++. +..+++
T Consensus 116 ~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~-l~~~-----~~l~~l~~L~~L~L~~N~--l~~~~~--------l~~l~~ 179 (291)
T 1h6t_A 116 SLSLEHNGISDINGLVHLPQLESLYLGNNK-ITDI-----TVLSRLTKLDTLSLEDNQ--ISDIVP--------LAGLTK 179 (291)
T ss_dssp EEECTTSCCCCCGGGGGCTTCCEEECCSSC-CCCC-----GGGGGCTTCSEEECCSSC--CCCCGG--------GTTCTT
T ss_pred EEECCCCcCCCChhhcCCCCCCEEEccCCc-CCcc-----hhhccCCCCCEEEccCCc--cccchh--------hcCCCc
Confidence 999998 77777777778899999999987 4433 247788899999999874 333332 556788
Q ss_pred cceeeccccccccccccccccCCCcCeEEecCCCCCcccCC
Q 035732 470 LTSLGISRFPNLERLSSSIVDLQNLTLLQLWGCPKLKYFPK 510 (559)
Q Consensus 470 L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 510 (559)
|+.|++++| .++.++. +..+++|+.|++++| .+...|.
T Consensus 180 L~~L~L~~N-~i~~l~~-l~~l~~L~~L~l~~n-~i~~~~~ 217 (291)
T 1h6t_A 180 LQNLYLSKN-HISDLRA-LAGLKNLDVLELFSQ-ECLNKPI 217 (291)
T ss_dssp CCEEECCSS-CCCBCGG-GTTCTTCSEEEEEEE-EEECCCE
T ss_pred cCEEECCCC-cCCCChh-hccCCCCCEEECcCC-cccCCcc
Confidence 999999984 5677764 678889999999984 4555443
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.46 E-value=4.7e-15 Score=146.43 Aligned_cols=233 Identities=15% Similarity=0.074 Sum_probs=148.9
Q ss_pred CCCCCccEEEEcCCCCccchH----HhhccCC-CCceEEeeecCccccccccCCCC-----CccceeecccccCceecCC
Q 035732 288 NLPPSLKSLYVYGCSKVESIA----ERLDNNT-SLEKISIKRCGTLKILPSGLHNL-----RQLQEISIQICENLVSFPE 357 (559)
Q Consensus 288 ~l~~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~ 357 (559)
..+.+|++|++++|......+ ..+..++ +|++|++++|.+....+..+..+ ++|++|++++|......+.
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 445679999999988655444 6777888 89999999998776555445443 8999999999864322221
Q ss_pred ----CCCCC-CCccEEeccccccccccccc----ccc-CCCcceEEecC-CCCCC-----cC-CC-CCCCCceeeecCcc
Q 035732 358 ----GGLPC-AKLTRLEIYDCKRLEALPKG----LHN-LTSLQHLTIGG-ALPSL-----EE-DG-LPTNLQLLNIEGNM 419 (559)
Q Consensus 358 ----~~~~~-~~L~~L~l~~~~~~~~~~~~----l~~-l~~L~~L~l~~-~l~~~-----~~-~~-~~~~L~~L~l~~~~ 419 (559)
.+... ++|+.|++++|......+.. +.. .++|++|++++ .+... +. .. ..++|++|++++|.
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence 12222 58999999999754433322 344 36999999998 55532 11 11 22489999999998
Q ss_pred chhhhhh-hcccccccC-ccccEEEEeecCCCceeeccccccccccccc-ccccceeeccccccccccc-----cccccC
Q 035732 420 EIWKSMI-ERGRGFHRF-SSLRRLTISRCDDDMVSFPLENKRLGTALPL-LASLTSLGISRFPNLERLS-----SSIVDL 491 (559)
Q Consensus 420 ~l~~~~~-~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~l~~~~-----~~~~~~ 491 (559)
+.+... .....+..+ ++|++|++++|........ .+...+.. .++|++|++++| .+...+ ..+..+
T Consensus 179 -l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~----~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l 252 (362)
T 3goz_A 179 -LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYA----ELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSL 252 (362)
T ss_dssp -GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH----HHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTT
T ss_pred -CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHH----HHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcC
Confidence 443322 111234556 5999999999852211110 01112322 358999999995 455432 234667
Q ss_pred CCcCeEEecCCCCCcc--------cCC-CCCCCCceEEEecCChh
Q 035732 492 QNLTLLQLWGCPKLKY--------FPK-KGLPSSLLELDIVGCPL 527 (559)
Q Consensus 492 ~~L~~L~l~~c~~l~~--------l~~-~~~~~~L~~L~l~~c~~ 527 (559)
++|++|++++| .+.. ++. ..-.++|+.|++++|+.
T Consensus 253 ~~L~~L~L~~n-~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 253 KHLQTVYLDYD-IVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp TTCSEEEEEHH-HHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred CCccEEEeccC-CccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 89999999996 3222 222 12346899999998863
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.43 E-value=3.6e-13 Score=120.43 Aligned_cols=149 Identities=17% Similarity=0.168 Sum_probs=70.3
Q ss_pred CCCCccceeecccccCceecCCCCCCCCCccEEeccccccccccccccccCCCcceEEecC-CCCC--CcCCCCCCCCce
Q 035732 336 HNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALPKGLHNLTSLQHLTIGG-ALPS--LEEDGLPTNLQL 412 (559)
Q Consensus 336 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~--~~~~~~~~~L~~ 412 (559)
..+++|++|++++|. +..++ ++..+++|+.|++++|. +..+ ..+..+++|++|++++ .+.. ......+++|++
T Consensus 41 ~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n~-~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANIN-VTDLT-GIEYAHNIKDLTINNIH-ATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSC-CSCCT-TGGGCTTCSEEEEESCC-CSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCC-ccChH-HHhcCCCCCEEEccCCC-CCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 345666666666653 23444 34445566666666662 2222 2445555555555554 3332 222333444555
Q ss_pred eeecCccchhhhhhhcccccccCccccEEEEeecCCCceeecccccccccccccccccceeeccccccccccccccccCC
Q 035732 413 LNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSSSIVDLQ 492 (559)
Q Consensus 413 L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 492 (559)
|++++|. +.+..+. .+. .+++|+.|++++|..+..++ .+..++
T Consensus 117 L~Ls~n~-i~~~~~~---~l~--------------------------------~l~~L~~L~L~~n~~i~~~~-~l~~l~ 159 (197)
T 4ezg_A 117 LDISHSA-HDDSILT---KIN--------------------------------TLPKVNSIDLSYNGAITDIM-PLKTLP 159 (197)
T ss_dssp EECCSSB-CBGGGHH---HHT--------------------------------TCSSCCEEECCSCTBCCCCG-GGGGCS
T ss_pred EEecCCc-cCcHhHH---HHh--------------------------------hCCCCCEEEccCCCCccccH-hhcCCC
Confidence 5554444 2221111 233 44555555555544344444 344555
Q ss_pred CcCeEEecCCCCCcccCCCCCCCCceEEEecCCh
Q 035732 493 NLTLLQLWGCPKLKYFPKKGLPSSLLELDIVGCP 526 (559)
Q Consensus 493 ~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~ 526 (559)
+|++|++++| .++.++.-.-+++|+.|++++|+
T Consensus 160 ~L~~L~l~~n-~i~~~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 160 ELKSLNIQFD-GVHDYRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp SCCEEECTTB-CCCCCTTGGGCSSCCEEEECBC-
T ss_pred CCCEEECCCC-CCcChHHhccCCCCCEEEeeCcc
Confidence 5555555552 44444432223455555555543
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.43 E-value=6.7e-13 Score=126.44 Aligned_cols=169 Identities=14% Similarity=0.154 Sum_probs=102.1
Q ss_pred CCCccCccEEeecCCCceEeeccCCccCcccceeeecCCcceeecCCCCCCCCCccEEEeccccCccEEeccCchhhhcc
Q 035732 13 VSSLPAFCKLEIDGCKKVLWRSATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHDELLQDI 92 (559)
Q Consensus 13 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l 92 (559)
++.+++|+.|++++|.....+.. ..+++|++|+++++ .++. +++ +..+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~~--------------------------~~l~~L~~L~L~~n-~l~~---~~~--l~~l 89 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQGI--------------------------QYLPNVTKLFLNGN-KLTD---IKP--LANL 89 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTG--------------------------GGCTTCCEEECCSS-CCCC---CGG--GTTC
T ss_pred hhhcCcccEEEccCCCcccChhH--------------------------hcCCCCCEEEccCC-ccCC---Ccc--cccC
Confidence 44567777777777654332211 13677777777766 3433 333 5677
Q ss_pred CCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccCCCCCCCCccceeeccCCCCccccCCCCCC
Q 035732 93 CSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLPQSSFSLSSLREIEIYNCSSLVSFPEVALP 172 (559)
Q Consensus 93 ~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 172 (559)
++|++|+++++ .++.++ .+..+ ++|++|++++|.. ..+ ..+..+++|++|++++|. +..++.+..+
T Consensus 90 ~~L~~L~l~~n-~l~~~~------~l~~l----~~L~~L~L~~n~i-~~~-~~l~~l~~L~~L~l~~n~-l~~~~~l~~l 155 (291)
T 1h6t_A 90 KNLGWLFLDEN-KVKDLS------SLKDL----KKLKSLSLEHNGI-SDI-NGLVHLPQLESLYLGNNK-ITDITVLSRL 155 (291)
T ss_dssp TTCCEEECCSS-CCCCGG------GGTTC----TTCCEEECTTSCC-CCC-GGGGGCTTCCEEECCSSC-CCCCGGGGGC
T ss_pred CCCCEEECCCC-cCCCCh------hhccC----CCCCEEECCCCcC-CCC-hhhcCCCCCCEEEccCCc-CCcchhhccC
Confidence 77777777775 455542 24444 7777777777754 444 346667777777777763 3344556667
Q ss_pred CCccEEEecccCCCcccCcccccCCCCCccEEecCCCCCccccccccCCCCcceEEeecc
Q 035732 173 SKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCRWLTFIAAVQLPSSLKKLQIRRC 232 (559)
Q Consensus 173 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 232 (559)
++|++|++++|. +..++.. ..+++|++|++++|. ++.++....+++|+.|+++++
T Consensus 156 ~~L~~L~L~~N~-l~~~~~l---~~l~~L~~L~L~~N~-i~~l~~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 156 TKLDTLSLEDNQ-ISDIVPL---AGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQ 210 (291)
T ss_dssp TTCSEEECCSSC-CCCCGGG---TTCTTCCEEECCSSC-CCBCGGGTTCTTCSEEEEEEE
T ss_pred CCCCEEEccCCc-cccchhh---cCCCccCEEECCCCc-CCCChhhccCCCCCEEECcCC
Confidence 777777777775 4444431 455677777777763 555554455566666666653
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.40 E-value=1.4e-12 Score=116.53 Aligned_cols=145 Identities=14% Similarity=0.162 Sum_probs=76.1
Q ss_pred CccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEecc
Q 035732 292 SLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIY 371 (559)
Q Consensus 292 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 371 (559)
+|++|+++++... .++ .+..+++|++|++++|.... +..+..+++|++|++++|......+..+..+++|+.|+++
T Consensus 45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 4555555554432 333 45555666666666553221 2245556666666666654433344445555566666666
Q ss_pred ccccccccccccccCCCcceEEecC-C-CCCCcCCCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeec
Q 035732 372 DCKRLEALPKGLHNLTSLQHLTIGG-A-LPSLEEDGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRC 446 (559)
Q Consensus 372 ~~~~~~~~~~~l~~l~~L~~L~l~~-~-l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~ 446 (559)
+|......+..+..+++|++|++++ . +..++....+++|++|++++|. +.+. ..+..+++|+.|++++|
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~-i~~~-----~~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG-VHDY-----RGIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC-CCCC-----TTGGGCSSCCEEEECBC
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC-CcCh-----HHhccCCCCCEEEeeCc
Confidence 6654444455555666666666655 3 5555444455566666666655 3221 13445555666666554
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.39 E-value=1.1e-12 Score=137.30 Aligned_cols=175 Identities=18% Similarity=0.228 Sum_probs=133.9
Q ss_pred hccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEeccccccccccccccccCCCcc
Q 035732 311 LDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALPKGLHNLTSLQ 390 (559)
Q Consensus 311 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 390 (559)
...+.+|+.|++++|.+.. ++ .+..+++|+.|++++|.. ..++. +..+++|+.|++++|.. ..++ .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l-~~~~~-l~~l~~L~~L~Ls~N~l-~~l~-~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKL-TDIKP-LTNLKNLGWLFLDENKI-KDLS-SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCC-CCCGG-GGGCTTCCEEECCSSCC-CCCT-TSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCC-CCChh-hccCCCCCEEECcCCCC-CCCh-hhccCCCCC
Confidence 4577889999999887544 33 578899999999999854 44443 66778999999999864 4444 688899999
Q ss_pred eEEecC-CCCCCcCCCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCCCceeecccccccccccccccc
Q 035732 391 HLTIGG-ALPSLEEDGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTALPLLAS 469 (559)
Q Consensus 391 ~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 469 (559)
.|++++ .+..++....+++|+.|+|++|. +... ..+..+++|+.|++++|. +..++. +..+++
T Consensus 113 ~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~-l~~l-----~~l~~l~~L~~L~Ls~N~--l~~~~~--------l~~l~~ 176 (605)
T 1m9s_A 113 SLSLEHNGISDINGLVHLPQLESLYLGNNK-ITDI-----TVLSRLTKLDTLSLEDNQ--ISDIVP--------LAGLTK 176 (605)
T ss_dssp EEECTTSCCCCCGGGGGCTTCSEEECCSSC-CCCC-----GGGGSCTTCSEEECCSSC--CCCCGG--------GTTCTT
T ss_pred EEEecCCCCCCCccccCCCccCEEECCCCc-cCCc-----hhhcccCCCCEEECcCCc--CCCchh--------hccCCC
Confidence 999998 88888777788999999999998 4433 257889999999999874 333332 556789
Q ss_pred cceeeccccccccccccccccCCCcCeEEecCCCCCcccCC
Q 035732 470 LTSLGISRFPNLERLSSSIVDLQNLTLLQLWGCPKLKYFPK 510 (559)
Q Consensus 470 L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 510 (559)
|+.|++++| .+..++ .+..+++|+.|++++| .+...|.
T Consensus 177 L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N-~l~~~p~ 214 (605)
T 1m9s_A 177 LQNLYLSKN-HISDLR-ALAGLKNLDVLELFSQ-ECLNKPI 214 (605)
T ss_dssp CCEEECCSS-CCCBCG-GGTTCTTCSEEECCSE-EEECCCC
T ss_pred CCEEECcCC-CCCCCh-HHccCCCCCEEEccCC-cCcCCcc
Confidence 999999995 566664 4678899999999985 4555444
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.35 E-value=3.9e-12 Score=131.57 Aligned_cols=91 Identities=26% Similarity=0.423 Sum_probs=56.3
Q ss_pred CceeEEecccCCCCcccCCCCCCCCccceeeccCCCCccccCCCCCCCCccEEEecccCCCcccCcccccCCCCCccEEe
Q 035732 126 CRLEYLGLTSCHGLVKLPQSSFSLSSLREIEIYNCSSLVSFPEVALPSKLKKIRISYCGALKSLPEAWMCDTNSSLEILN 205 (559)
Q Consensus 126 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 205 (559)
.+|++|++++|.. ..+|..+ +++|++|++++|. +..+| ..+++|++|++++|. ++.+|. +. .+|++|+
T Consensus 59 ~~L~~L~Ls~n~L-~~lp~~l--~~~L~~L~Ls~N~-l~~ip--~~l~~L~~L~Ls~N~-l~~ip~-l~----~~L~~L~ 126 (571)
T 3cvr_A 59 NQFSELQLNRLNL-SSLPDNL--PPQITVLEITQNA-LISLP--ELPASLEYLDACDNR-LSTLPE-LP----ASLKHLD 126 (571)
T ss_dssp TTCSEEECCSSCC-SCCCSCC--CTTCSEEECCSSC-CSCCC--CCCTTCCEEECCSSC-CSCCCC-CC----TTCCEEE
T ss_pred CCccEEEeCCCCC-CccCHhH--cCCCCEEECcCCC-Ccccc--cccCCCCEEEccCCC-CCCcch-hh----cCCCEEE
Confidence 3777788877754 5566655 3677778887764 34566 456777777777776 444665 21 1677777
Q ss_pred cCCCCCccccccccCCCCcceEEeec
Q 035732 206 IEHCRWLTFIAAVQLPSSLKKLQIRR 231 (559)
Q Consensus 206 l~~~~~~~~~~~~~~~~~L~~L~l~~ 231 (559)
+++|. ++.++. .+++|+.|++++
T Consensus 127 Ls~N~-l~~lp~--~l~~L~~L~Ls~ 149 (571)
T 3cvr_A 127 VDNNQ-LTMLPE--LPALLEYINADN 149 (571)
T ss_dssp CCSSC-CSCCCC--CCTTCCEEECCS
T ss_pred CCCCc-CCCCCC--cCccccEEeCCC
Confidence 77774 444443 344555555554
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.35 E-value=3.3e-12 Score=115.29 Aligned_cols=159 Identities=16% Similarity=0.035 Sum_probs=77.9
Q ss_pred CCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCC-CCCCCCCccEEe
Q 035732 291 PSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPE-GGLPCAKLTRLE 369 (559)
Q Consensus 291 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~ 369 (559)
+++++|+++++......+..+..+++|++|++++|.+....+..+..+++|++|++++|.. +.++. .+..+++|+.|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL-QSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC-CccCHhHhcCccCCCEEE
Confidence 4566666666654433333445555666666655544433233344555555555555532 22222 223344455555
Q ss_pred ccccccccccccccccCCCcceEEecCCCCCCcC--CCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecC
Q 035732 370 IYDCKRLEALPKGLHNLTSLQHLTIGGALPSLEE--DGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCD 447 (559)
Q Consensus 370 l~~~~~~~~~~~~l~~l~~L~~L~l~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~ 447 (559)
+++|. +..++. ...+++|++|++++|. ++.... ..+..+++|+.|++++|.
T Consensus 107 L~~N~-----------------------l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~---~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 107 LNTNQ-----------------------LQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPD---GVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CCSSC-----------------------CCCCCTTTTTTCTTCCEEECCSSC-CSCCCT---TTTTTCTTCCEEECCSCC
T ss_pred cCCCc-----------------------CcccCHhHhccCCcCCEEECCCCc-cceeCH---HHhccCCCccEEEecCCC
Confidence 54443 333322 2334555555555554 322211 235566667777766652
Q ss_pred CCceeecccccccccccccccccceeeccccccccccccccccCC
Q 035732 448 DDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSSSIVDLQ 492 (559)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 492 (559)
....+++|+.|+++.+..-..+|..+..++
T Consensus 160 ---------------~~~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 160 ---------------WDCTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp ---------------BCCCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred ---------------eecCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 012335677777777554446665444433
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.35 E-value=7.1e-12 Score=129.59 Aligned_cols=180 Identities=18% Similarity=0.214 Sum_probs=97.5
Q ss_pred CccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEecc
Q 035732 292 SLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIY 371 (559)
Q Consensus 292 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 371 (559)
+++.|+++++.... +|..+ +++|++|++++|.+. .+| ..+++|++|++++|. ++.+|. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECC
Confidence 56777777665332 44333 256777777776554 344 335667777777663 334554 222 67777777
Q ss_pred ccccccccccccccCCCcceEEecC-CCCCCcCCCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCCCc
Q 035732 372 DCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEEDGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDM 450 (559)
Q Consensus 372 ~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 450 (559)
+|.. ..+|. .+++|+.|++++ .++.++. .+++|++|++++|. ++. ++ . +. ++|+.|++++|. +
T Consensus 129 ~N~l-~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~-L~~-lp---~-l~--~~L~~L~Ls~N~--L 192 (571)
T 3cvr_A 129 NNQL-TMLPE---LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQ-LTF-LP---E-LP--ESLEALDVSTNL--L 192 (571)
T ss_dssp SSCC-SCCCC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSC-CSC-CC---C-CC--TTCCEEECCSSC--C
T ss_pred CCcC-CCCCC---cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCC-CCC-cc---h-hh--CCCCEEECcCCC--C
Confidence 6653 33554 456677777766 5555554 45667777777666 332 11 1 22 566666666653 3
Q ss_pred eeecccccccccccccccccceeeccccccccccccccccCCCcCeEEecCC
Q 035732 451 VSFPLENKRLGTALPLLASLTSLGISRFPNLERLSSSIVDLQNLTLLQLWGC 502 (559)
Q Consensus 451 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c 502 (559)
..++. ... ......+.|+.|++++ +.++.+|..+..+++|+.|++++|
T Consensus 193 ~~lp~-~~~--~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 193 ESLPA-VPV--RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp SSCCC-CC----------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSS
T ss_pred Cchhh-HHH--hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCC
Confidence 33333 100 0000111226666666 445566665555666666666663
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.33 E-value=4.3e-12 Score=114.50 Aligned_cols=147 Identities=19% Similarity=0.168 Sum_probs=106.9
Q ss_pred CCccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEcCCCCccchHHhhccCCCCceEEeeecCcccccccc
Q 035732 255 SLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSG 334 (559)
Q Consensus 255 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 334 (559)
+++++|++++ ++++. ++.. .+ ..+ ++|++|++++|......+..+..+++|++|++++|.+....+..
T Consensus 28 ~~l~~L~l~~-n~l~~-~~~~----~~-----~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 95 (208)
T 2o6s_A 28 AQTTYLDLET-NSLKS-LPNG----VF-----DEL-TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGV 95 (208)
T ss_dssp TTCSEEECCS-SCCCC-CCTT----TT-----TTC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCcEEEcCC-CccCc-CChh----hh-----ccc-ccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhH
Confidence 3699999999 56664 3321 12 233 68999999998766555556789999999999999877655556
Q ss_pred CCCCCccceeecccccCceecCC-CCCCCCCccEEeccccccccccccccccCCCcceEEecC-CCCCCcCCCCCCCCce
Q 035732 335 LHNLRQLQEISIQICENLVSFPE-GGLPCAKLTRLEIYDCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEEDGLPTNLQL 412 (559)
Q Consensus 335 ~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~ 412 (559)
+..+++|++|++++|.. +.++. .+..+++|+.|++++|......+..+..+++|+.|++++ .+. ..+++|+.
T Consensus 96 ~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-----~~~~~l~~ 169 (208)
T 2o6s_A 96 FDKLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-----CTCPGIRY 169 (208)
T ss_dssp TTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-----CCTTTTHH
T ss_pred hcCccCCCEEEcCCCcC-cccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-----cCCCCHHH
Confidence 78999999999999854 45554 356778999999999875443334567788888888876 332 23466777
Q ss_pred eeecCcc
Q 035732 413 LNIEGNM 419 (559)
Q Consensus 413 L~l~~~~ 419 (559)
|+++.|.
T Consensus 170 L~~~~n~ 176 (208)
T 2o6s_A 170 LSEWINK 176 (208)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7776665
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.33 E-value=1.1e-11 Score=112.60 Aligned_cols=130 Identities=14% Similarity=0.146 Sum_probs=95.6
Q ss_pred CCCCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCC-CCCCCCccE
Q 035732 289 LPPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEG-GLPCAKLTR 367 (559)
Q Consensus 289 l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~ 367 (559)
+|++++.|++++|......+..+..+++|++|++++|.+....+..+.++++|++|++++|.. +.+|.. +..+++|+.
T Consensus 30 l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~f~~l~~L~~ 108 (220)
T 2v9t_B 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI-TELPKSLFEGLFSLQL 108 (220)
T ss_dssp CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC-CCCCTTTTTTCTTCCE
T ss_pred cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC-CccCHhHccCCCCCCE
Confidence 346788999988876655556778888888888888887766677888888888888888843 455554 456778888
Q ss_pred EeccccccccccccccccCCCcceEEecC-CCCCCcC--CCCCCCCceeeecCcc
Q 035732 368 LEIYDCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEE--DGLPTNLQLLNIEGNM 419 (559)
Q Consensus 368 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~--~~~~~~L~~L~l~~~~ 419 (559)
|++++|......+..+..+++|+.|++++ .++.++. ...+++|++|++++|+
T Consensus 109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 88888876555566777788888888877 6666544 3445667777777765
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.33 E-value=2.6e-12 Score=134.38 Aligned_cols=170 Identities=18% Similarity=0.208 Sum_probs=135.3
Q ss_pred CCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEec
Q 035732 291 PSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEI 370 (559)
Q Consensus 291 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 370 (559)
.+|+.|++.+|... .++ .+..+++|+.|++++|.+....+ +..+++|+.|++++|. +..++ .+..+++|+.|++
T Consensus 43 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEEe
Confidence 68999999987743 343 68899999999999998766433 8899999999999985 45555 5677889999999
Q ss_pred cccccccccccccccCCCcceEEecC-CCCCCcCCCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCCC
Q 035732 371 YDCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEEDGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDD 449 (559)
Q Consensus 371 ~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 449 (559)
++|... .+ ..+..+++|+.|++++ .+..++.+..+++|+.|+|++|. +.... .+..+++|+.|++++|.
T Consensus 117 s~N~l~-~l-~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~-l~~~~-----~l~~l~~L~~L~Ls~N~-- 186 (605)
T 1m9s_A 117 EHNGIS-DI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQ-ISDIV-----PLAGLTKLQNLYLSKNH-- 186 (605)
T ss_dssp TTSCCC-CC-GGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSC-CCCCG-----GGTTCTTCCEEECCSSC--
T ss_pred cCCCCC-CC-ccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCc-CCCch-----hhccCCCCCEEECcCCC--
Confidence 999754 44 4588999999999999 88888777888999999999998 54332 27789999999999984
Q ss_pred ceeecccccccccccccccccceeeccccccccccc
Q 035732 450 MVSFPLENKRLGTALPLLASLTSLGISRFPNLERLS 485 (559)
Q Consensus 450 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 485 (559)
+..++. +..+++|+.|++++|+ +...|
T Consensus 187 i~~l~~--------l~~l~~L~~L~L~~N~-l~~~p 213 (605)
T 1m9s_A 187 ISDLRA--------LAGLKNLDVLELFSQE-CLNKP 213 (605)
T ss_dssp CCBCGG--------GTTCTTCSEEECCSEE-EECCC
T ss_pred CCCChH--------HccCCCCCEEEccCCc-CcCCc
Confidence 444433 7778999999999965 44444
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.32 E-value=4e-12 Score=125.21 Aligned_cols=154 Identities=14% Similarity=0.121 Sum_probs=116.3
Q ss_pred CCCCccEEEEcCCCCccchHHhhc-cCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCC-CCCCCCCcc
Q 035732 289 LPPSLKSLYVYGCSKVESIAERLD-NNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPE-GGLPCAKLT 366 (559)
Q Consensus 289 l~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~ 366 (559)
+|..++.|++++|......+..+. ++++|++|++++|.+....+..+..+++|++|++++|.. +.++. .+..+++|+
T Consensus 37 ~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~ 115 (361)
T 2xot_A 37 LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL-HTLDEFLFSDLQALE 115 (361)
T ss_dssp CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCC
T ss_pred CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC-CcCCHHHhCCCcCCC
Confidence 446789999999876665555666 889999999999887766667788999999999999864 44444 566778999
Q ss_pred EEeccccccccccccccccCCCcceEEecC-CCCCCcCC-----CCCCCCceeeecCccchhhhhhhcccccccCcc--c
Q 035732 367 RLEIYDCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEED-----GLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSS--L 438 (559)
Q Consensus 367 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~-----~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~--L 438 (559)
.|++++|......+..|..+++|+.|++++ .+..++.. ..+++|+.|++++|. +...... .+..++. +
T Consensus 116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~---~~~~l~~~~l 191 (361)
T 2xot_A 116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLT---DLQKLPAWVK 191 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCCCCHH---HHHHSCHHHH
T ss_pred EEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHH---HhhhccHhhc
Confidence 999999986655577889999999999998 77777653 347889999999987 4433322 4556665 4
Q ss_pred cEEEEeecC
Q 035732 439 RRLTISRCD 447 (559)
Q Consensus 439 ~~L~l~~~~ 447 (559)
+.|++++|.
T Consensus 192 ~~l~l~~N~ 200 (361)
T 2xot_A 192 NGLYLHNNP 200 (361)
T ss_dssp TTEECCSSC
T ss_pred ceEEecCCC
Confidence 788888763
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.31 E-value=8.6e-13 Score=123.65 Aligned_cols=140 Identities=14% Similarity=0.123 Sum_probs=71.5
Q ss_pred CccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEecc
Q 035732 292 SLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIY 371 (559)
Q Consensus 292 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 371 (559)
++..+.+.++... .++ .+..+++|++|++++|.+.. ++ .+..+++|++|++++|. +..++. +..+++|+.|+++
T Consensus 20 ~l~~l~l~~~~i~-~~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVT-DLV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTT-SEE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCcc-ccc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECC
Confidence 3444455554322 222 34566667777776664432 33 45566666666666663 333333 4445566666666
Q ss_pred ccccccccccccccCCCcceEEecC-CCCCCcCCCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeec
Q 035732 372 DCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEEDGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRC 446 (559)
Q Consensus 372 ~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~ 446 (559)
+|.. +.++.... ++|+.|++++ .+..++....+++|++|++++|+ +++. ..+..+++|+.|++++|
T Consensus 94 ~N~l-~~l~~~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~-i~~~-----~~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 94 RNRL-KNLNGIPS--ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNK-LKSI-----VMLGFLSKLEVLDLHGN 160 (263)
T ss_dssp SSCC-SCCTTCCC--SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSC-CCBC-----GGGGGCTTCCEEECTTS
T ss_pred CCcc-CCcCcccc--CcccEEEccCCccCCChhhcCcccccEEECCCCc-CCCC-----hHHccCCCCCEEECCCC
Confidence 6542 33332212 5566666655 55555444455555555555555 3322 12445555555555554
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.30 E-value=2.7e-12 Score=120.18 Aligned_cols=172 Identities=19% Similarity=0.249 Sum_probs=131.8
Q ss_pred cCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEeccccccccccccccccCCCcceE
Q 035732 313 NNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALPKGLHNLTSLQHL 392 (559)
Q Consensus 313 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 392 (559)
.+.++..++++++.... ++ .+..+++|++|++++| .++.++ .+..+++|+.|++++|. +..++. +..+++|+.|
T Consensus 17 ~l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEE
Confidence 34556667777765543 33 5678899999999998 456666 56677899999999986 455555 8999999999
Q ss_pred EecC-CCCCCcCCCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCCCceeecccccccccccccccccc
Q 035732 393 TIGG-ALPSLEEDGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTALPLLASLT 471 (559)
Q Consensus 393 ~l~~-~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 471 (559)
++++ .++.++.... ++|++|++++|. ++.. ..+..+++|+.|++++|. +..++. +..+++|+
T Consensus 91 ~L~~N~l~~l~~~~~-~~L~~L~L~~N~-l~~~-----~~l~~l~~L~~L~Ls~N~--i~~~~~--------l~~l~~L~ 153 (263)
T 1xeu_A 91 SVNRNRLKNLNGIPS-ACLSRLFLDNNE-LRDT-----DSLIHLKNLEILSIRNNK--LKSIVM--------LGFLSKLE 153 (263)
T ss_dssp ECCSSCCSCCTTCCC-SSCCEEECCSSC-CSBS-----GGGTTCTTCCEEECTTSC--CCBCGG--------GGGCTTCC
T ss_pred ECCCCccCCcCcccc-CcccEEEccCCc-cCCC-----hhhcCcccccEEECCCCc--CCCChH--------HccCCCCC
Confidence 9999 8888777655 999999999998 5443 247889999999999984 444432 66789999
Q ss_pred eeeccccccccccccccccCCCcCeEEecCCCCCcccCC
Q 035732 472 SLGISRFPNLERLSSSIVDLQNLTLLQLWGCPKLKYFPK 510 (559)
Q Consensus 472 ~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 510 (559)
.|++++| .+..+ ..+..+++|+.|+++++ .+...|.
T Consensus 154 ~L~L~~N-~i~~~-~~l~~l~~L~~L~l~~N-~~~~~~~ 189 (263)
T 1xeu_A 154 VLDLHGN-EITNT-GGLTRLKKVNWIDLTGQ-KCVNEPV 189 (263)
T ss_dssp EEECTTS-CCCBC-TTSTTCCCCCEEEEEEE-EEECCCE
T ss_pred EEECCCC-cCcch-HHhccCCCCCEEeCCCC-cccCCcc
Confidence 9999994 56666 55788999999999994 5655443
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.30 E-value=2.5e-11 Score=111.16 Aligned_cols=97 Identities=21% Similarity=0.196 Sum_probs=48.5
Q ss_pred eeecccccCceecCCCCCCCCCccEEeccccccccccccccccCCCcceEEecC-CCCCCcC--CCCCCCCceeeecCcc
Q 035732 343 EISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEE--DGLPTNLQLLNIEGNM 419 (559)
Q Consensus 343 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~--~~~~~~L~~L~l~~~~ 419 (559)
.++.+++ .++.+|.... ++|+.|++++|......|..+..+++|+.|++++ .+..++. +..+++|++|++++|.
T Consensus 23 ~v~c~~~-~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 23 TVDCRSK-RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp EEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EeEccCC-CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 4444443 3344444332 3677777777665444455566666666666665 5554433 2334555555555554
Q ss_pred chhhhhhhcccccccCccccEEEEeec
Q 035732 420 EIWKSMIERGRGFHRFSSLRRLTISRC 446 (559)
Q Consensus 420 ~l~~~~~~~~~~~~~l~~L~~L~l~~~ 446 (559)
++.... ..+..+++|+.|++++|
T Consensus 100 -l~~l~~---~~~~~l~~L~~L~Ls~N 122 (229)
T 3e6j_A 100 -LTVLPS---AVFDRLVHLKELFMCCN 122 (229)
T ss_dssp -CCCCCT---TTTTTCTTCCEEECCSS
T ss_pred -CCccCh---hHhCcchhhCeEeccCC
Confidence 322211 13344445555555444
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.28 E-value=6.7e-12 Score=123.61 Aligned_cols=98 Identities=13% Similarity=0.071 Sum_probs=50.2
Q ss_pred ceEEeeecCccccccccCCCCCccceeecccccCceecCCC-CC-CCCCccEEeccccccccccccccccCCCcceEEec
Q 035732 318 EKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEG-GL-PCAKLTRLEIYDCKRLEALPKGLHNLTSLQHLTIG 395 (559)
Q Consensus 318 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 395 (559)
+.++.+++.+ ..+|..+ .+.++.|++++|.. +.++.. +. .+++|+.|++++|......+..|..+++|++|+++
T Consensus 21 ~~l~c~~~~l-~~iP~~~--~~~l~~L~Ls~N~l-~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQL-PNVPQSL--PSYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCC-SSCCSSC--CTTCSEEECCSSCC-CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCc-CccCccC--CCCCCEEECCCCCC-CccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 3555555433 2344433 23466777777643 334333 32 55667777776665433333455666666666665
Q ss_pred C-CCCCCcC--CCCCCCCceeeecCcc
Q 035732 396 G-ALPSLEE--DGLPTNLQLLNIEGNM 419 (559)
Q Consensus 396 ~-~l~~~~~--~~~~~~L~~L~l~~~~ 419 (559)
+ .+..++. +..+++|++|++++|.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~ 123 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNH 123 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCc
Confidence 5 4444332 2334455555555554
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.27 E-value=3.8e-11 Score=109.92 Aligned_cols=129 Identities=21% Similarity=0.237 Sum_probs=98.3
Q ss_pred CCCCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCC-CCCCCCCccE
Q 035732 289 LPPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPE-GGLPCAKLTR 367 (559)
Q Consensus 289 l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~ 367 (559)
+|++|++|++++|......+..+..+++|++|++++|.+....+..+..+++|+.|++++|. ++.++. .+..+++|+.
T Consensus 38 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~ 116 (229)
T 3e6j_A 38 IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKE 116 (229)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc-CCccChhHhCcchhhCe
Confidence 34689999999988776667778888999999999987755444556788999999999884 445554 3566778999
Q ss_pred EeccccccccccccccccCCCcceEEecC-CCCCCcC--CCCCCCCceeeecCcc
Q 035732 368 LEIYDCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEE--DGLPTNLQLLNIEGNM 419 (559)
Q Consensus 368 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~--~~~~~~L~~L~l~~~~ 419 (559)
|++++|. +..+|..+..+++|+.|++++ .+..++. ...+++|+.|++++|+
T Consensus 117 L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 117 LFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp EECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 9998886 457788888888888888888 6766654 4456778888888776
No 114
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.26 E-value=3.9e-11 Score=116.57 Aligned_cols=78 Identities=15% Similarity=0.165 Sum_probs=40.2
Q ss_pred CccccEEEEeecCCCceeecccccccccccccccccceeecccccccccccc-ccccCCCcC-eEEecCCCCCcccCCCC
Q 035732 435 FSSLRRLTISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSS-SIVDLQNLT-LLQLWGCPKLKYFPKKG 512 (559)
Q Consensus 435 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~-~L~l~~c~~l~~l~~~~ 512 (559)
+++|+.+++.+|. +..++... |.++.+|+++++.++ ++.++. .|.++.+|+ .+++.+ .++.++...
T Consensus 225 ~~~L~~l~L~~n~--i~~I~~~a------F~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~a 292 (329)
T 3sb4_A 225 MPNLVSLDISKTN--ATTIPDFT------FAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGA 292 (329)
T ss_dssp CTTCCEEECTTBC--CCEECTTT------TTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTT
T ss_pred cCCCeEEECCCCC--cceecHhh------hhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhh
Confidence 5556666655542 44444432 555556666666552 444443 245555565 565554 455555533
Q ss_pred C--CCCceEEEecC
Q 035732 513 L--PSSLLELDIVG 524 (559)
Q Consensus 513 ~--~~~L~~L~l~~ 524 (559)
+ +++|+.+++.+
T Consensus 293 F~~c~~L~~l~l~~ 306 (329)
T 3sb4_A 293 FMGCDNLRYVLATG 306 (329)
T ss_dssp TTTCTTEEEEEECS
T ss_pred hhCCccCCEEEeCC
Confidence 3 34555555543
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.26 E-value=3.3e-11 Score=109.54 Aligned_cols=130 Identities=14% Similarity=0.030 Sum_probs=81.3
Q ss_pred CCCccEEEEcCCCCccchH-HhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEE
Q 035732 290 PPSLKSLYVYGCSKVESIA-ERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRL 368 (559)
Q Consensus 290 ~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 368 (559)
|..+++|++++|......+ ..+..+++|++|++++|.+....+..+.++++|++|++++|......+..+..+++|++|
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence 3567788888776544422 346677777788777776655545567777777777777775433223335556677777
Q ss_pred eccccccccccccccccCCCcceEEecC-CCCCCcC--CCCCCCCceeeecCcc
Q 035732 369 EIYDCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEE--DGLPTNLQLLNIEGNM 419 (559)
Q Consensus 369 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~--~~~~~~L~~L~l~~~~ 419 (559)
++++|......|..+..+++|+.|++++ .++.+++ +..+++|++|++++|+
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 7777765554456666667777777766 5555422 3345566666666655
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.23 E-value=4.3e-11 Score=108.76 Aligned_cols=127 Identities=20% Similarity=0.238 Sum_probs=67.6
Q ss_pred CCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEecccccccccccc-ccccCCCcceEE
Q 035732 315 TSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALPK-GLHNLTSLQHLT 393 (559)
Q Consensus 315 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~ 393 (559)
++|+.|++++|.+....+..+..+++|++|++++|......+..+..+++|+.|++++|... .+|. .|..+++|+.|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEE
Confidence 46777777776655544445666677777777776544334555556666677777666533 3332 345566666666
Q ss_pred ecC-CCCCCcC--CCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeec
Q 035732 394 IGG-ALPSLEE--DGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRC 446 (559)
Q Consensus 394 l~~-~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~ 446 (559)
+++ .+..++. +..+++|++|++++|. ++...+ ..+..+++|+.|++++|
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~---~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAK---GTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCT---TTTTTCTTCCEEECCSS
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECH---HHHhCCCCCCEEEeCCC
Confidence 655 4444422 2334455555555554 222211 13444444444444443
No 117
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.23 E-value=6.4e-11 Score=115.02 Aligned_cols=107 Identities=16% Similarity=0.178 Sum_probs=57.3
Q ss_pred CCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCC-CCCCCCCcc-EE
Q 035732 291 PSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPE-GGLPCAKLT-RL 368 (559)
Q Consensus 291 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~-~L 368 (559)
.++..+.+.+.-...........+++|+.+++.+|.....-...|.++++|+.+++.++ ++.++. .+..+++|+ .+
T Consensus 202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l 279 (329)
T 3sb4_A 202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTL 279 (329)
T ss_dssp GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEE
T ss_pred cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEE
Confidence 34555555553222222222234677777777766544433445666777777777665 444544 355566676 66
Q ss_pred eccccccccccc-cccccCCCcceEEecC-CCCCC
Q 035732 369 EIYDCKRLEALP-KGLHNLTSLQHLTIGG-ALPSL 401 (559)
Q Consensus 369 ~l~~~~~~~~~~-~~l~~l~~L~~L~l~~-~l~~~ 401 (559)
++.+ .++.++ ..|.++++|+.+++++ .++.+
T Consensus 280 ~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I 312 (329)
T 3sb4_A 280 ELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTL 312 (329)
T ss_dssp EECT--TCCEECTTTTTTCTTEEEEEECSSCCCEE
T ss_pred EEcc--cceEEchhhhhCCccCCEEEeCCCccCcc
Confidence 6665 233332 4556666666665544 44433
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.20 E-value=1.1e-10 Score=106.17 Aligned_cols=109 Identities=12% Similarity=0.170 Sum_probs=84.1
Q ss_pred CCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEec
Q 035732 291 PSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEI 370 (559)
Q Consensus 291 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 370 (559)
++|++|++++|......+..+.++++|++|++++|.+....+..+..+++|++|++++|......+..+..+++|+.|++
T Consensus 57 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 136 (220)
T 2v70_A 57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL 136 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEEC
T ss_pred CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEEC
Confidence 57888888887765555567888888888888888877666666788888999999888654444566777788999999
Q ss_pred cccccccccccccccCCCcceEEecC-CCC
Q 035732 371 YDCKRLEALPKGLHNLTSLQHLTIGG-ALP 399 (559)
Q Consensus 371 ~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~ 399 (559)
++|......|..+..+++|+.|++++ .+.
T Consensus 137 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 137 YDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 88876555577888889999999877 443
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.20 E-value=3.5e-11 Score=104.47 Aligned_cols=135 Identities=19% Similarity=0.214 Sum_probs=84.3
Q ss_pred CCccEEeccccccc-cccccccccCCCcceEEecC-CCCCCcCCCCCCCCceeeecCccchhhhhhhcccccccCccccE
Q 035732 363 AKLTRLEIYDCKRL-EALPKGLHNLTSLQHLTIGG-ALPSLEEDGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRR 440 (559)
Q Consensus 363 ~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~ 440 (559)
++|+.|++++|... ..+|..+..+++|+.|++++ .+..++....+++|++|++++|. +....+. .+..+++|+.
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~---~~~~l~~L~~ 99 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENR-IFGGLDM---LAEKLPNLTH 99 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCC-CCSCCCH---HHHHCTTCCE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCc-CchHHHH---HHhhCCCCCE
Confidence 36777777776543 25666666667777777766 55555445566777777777777 4332222 3455778888
Q ss_pred EEEeecCCCceeecccccccccccccccccceeecccccccccccc----ccccCCCcCeEEecCCCCCcccCC
Q 035732 441 LTISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSS----SIVDLQNLTLLQLWGCPKLKYFPK 510 (559)
Q Consensus 441 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~----~~~~~~~L~~L~l~~c~~l~~l~~ 510 (559)
|++++|. +..++.-. .+..+++|+.|++++| .+..++. .+..+++|++|++++| .++.+|.
T Consensus 100 L~Ls~N~--l~~~~~~~-----~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 100 LNLSGNK--LKDISTLE-----PLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp EECBSSS--CCSSGGGG-----GGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred EeccCCc--cCcchhHH-----HHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence 8887763 33333211 2556777888888874 4555554 5567788888888874 4555554
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.18 E-value=2.1e-13 Score=141.81 Aligned_cols=196 Identities=14% Similarity=0.096 Sum_probs=116.5
Q ss_pred CCccEEEEcCCCCccchHHhhccCCCCceEEeeecC-------------ccccccccCCCCCccceee-cccccCceecC
Q 035732 291 PSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCG-------------TLKILPSGLHNLRQLQEIS-IQICENLVSFP 356 (559)
Q Consensus 291 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~~~~~~ 356 (559)
++|+.|+++++. ++.+|..++++++|+.|++++|. ..+..|..+.++++|+.|+ +..+. +.
T Consensus 349 ~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~-~~--- 423 (567)
T 1dce_A 349 EQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY-LD--- 423 (567)
T ss_dssp TTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH-HH---
T ss_pred ccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc-cc---
Confidence 467777777654 45677777777788877776553 2223344455566666665 33321 11
Q ss_pred CCCCCCCCccEEeccccccccccccccccCCCcceEEecC-CCCCCcCCCCCCCCceeeecCccchhhhhhhcccccccC
Q 035732 357 EGGLPCAKLTRLEIYDCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEEDGLPTNLQLLNIEGNMEIWKSMIERGRGFHRF 435 (559)
Q Consensus 357 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l 435 (559)
.|+.+.+.+|. +..++. ..|+.|++++ .++.+|....+++|+.|++++|. ++ .++ ..+..+
T Consensus 424 -------~L~~l~l~~n~-i~~l~~-----~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~-l~-~lp---~~~~~l 485 (567)
T 1dce_A 424 -------DLRSKFLLENS-VLKMEY-----ADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNR-LR-ALP---PALAAL 485 (567)
T ss_dssp -------HHHHHHHHHHH-HHHHHH-----TTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSC-CC-CCC---GGGGGC
T ss_pred -------hhhhhhhhccc-ccccCc-----cCceEEEecCCCCCCCcCccccccCcEeecCccc-cc-ccc---hhhhcC
Confidence 22233333322 111111 2356666666 55555555556677777777776 33 222 256777
Q ss_pred ccccEEEEeecCCCceeecccccccccccccccccceeecccccccccc--ccccccCCCcCeEEecCCCCCcccCCCCC
Q 035732 436 SSLRRLTISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERL--SSSIVDLQNLTLLQLWGCPKLKYFPKKGL 513 (559)
Q Consensus 436 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~~~~~L~~L~l~~c~~l~~l~~~~~ 513 (559)
++|+.|++++|. +..+|. +..+++|+.|++++ +.+..+ |..+..+++|+.|++++ |.++.+|+...
T Consensus 486 ~~L~~L~Ls~N~--l~~lp~--------l~~l~~L~~L~Ls~-N~l~~~~~p~~l~~l~~L~~L~L~~-N~l~~~~~~~~ 553 (567)
T 1dce_A 486 RCLEVLQASDNA--LENVDG--------VANLPRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQG-NSLCQEEGIQE 553 (567)
T ss_dssp TTCCEEECCSSC--CCCCGG--------GTTCSSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTT-SGGGGSSSCTT
T ss_pred CCCCEEECCCCC--CCCCcc--------cCCCCCCcEEECCC-CCCCCCCCcHHHhcCCCCCEEEecC-CcCCCCccHHH
Confidence 788888887764 334442 66678888888888 456665 67777888888888888 56777665221
Q ss_pred -----CCCceEEE
Q 035732 514 -----PSSLLELD 521 (559)
Q Consensus 514 -----~~~L~~L~ 521 (559)
+++|+.|+
T Consensus 554 ~l~~~lp~L~~L~ 566 (567)
T 1dce_A 554 RLAEMLPSVSSIL 566 (567)
T ss_dssp HHHHHCTTCSEEE
T ss_pred HHHHHCcccCccC
Confidence 46777775
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.12 E-value=6e-11 Score=102.94 Aligned_cols=130 Identities=17% Similarity=0.169 Sum_probs=72.7
Q ss_pred CCCceEEeeecCcc-ccccccCCCCCccceeecccccCceecCCCCCCCCCccEEeccccccccccccccccCCCcceEE
Q 035732 315 TSLEKISIKRCGTL-KILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALPKGLHNLTSLQHLT 393 (559)
Q Consensus 315 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 393 (559)
++|++|++++|.+. ..+|..+..+++|++|++++|. ++.+ ..+..+++|+.|++++|.....+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555443 2344444555555555555553 2223 3344455666666666654433444555566666666
Q ss_pred ecC-CCCCCc---CCCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecC
Q 035732 394 IGG-ALPSLE---EDGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCD 447 (559)
Q Consensus 394 l~~-~l~~~~---~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~ 447 (559)
+++ .+..++ ....+++|++|++++|+ +..........+..+++|+.|++++|.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 666 555443 34556777888888776 443322000246788889999888874
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.11 E-value=8.6e-11 Score=99.69 Aligned_cols=125 Identities=18% Similarity=0.184 Sum_probs=71.3
Q ss_pred CccEEeccccccc-cccccccccCCCcceEEecC-CCCCCcCCCCCCCCceeeecCccchhhhhhhcccccccCccccEE
Q 035732 364 KLTRLEIYDCKRL-EALPKGLHNLTSLQHLTIGG-ALPSLEEDGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRL 441 (559)
Q Consensus 364 ~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L 441 (559)
+|+.|++++|... ..+|..+..+++|+.|++++ .+..++....+++|++|++++|. +...++. .+..+++|+.|
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~---~~~~l~~L~~L 93 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNR-VSGGLEV---LAEKCPNLTHL 93 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSC-CCSCTHH---HHHHCTTCCEE
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCc-ccchHHH---HhhhCCCCCEE
Confidence 5666666666543 35555556666666666666 55544445556677777777776 3332332 34556777777
Q ss_pred EEeecCCCceeecccccccccccccccccceeecccccccccccc----ccccCCCcCeEEec
Q 035732 442 TISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSS----SIVDLQNLTLLQLW 500 (559)
Q Consensus 442 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~----~~~~~~~L~~L~l~ 500 (559)
++++|. +..++... .+..+++|+.|++++| .+..++. .+..+++|+.|+++
T Consensus 94 ~ls~N~--i~~~~~~~-----~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNK--IKDLSTIE-----PLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSC--CCSHHHHG-----GGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCc--CCChHHHH-----HHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 777663 22222100 2555667777777774 3455443 35566777776654
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.08 E-value=5.9e-11 Score=100.71 Aligned_cols=103 Identities=18% Similarity=0.168 Sum_probs=53.5
Q ss_pred CCCceEEeeecCcc-ccccccCCCCCccceeecccccCceecCCCCCCCCCccEEeccccccccccccccccCCCcceEE
Q 035732 315 TSLEKISIKRCGTL-KILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALPKGLHNLTSLQHLT 393 (559)
Q Consensus 315 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 393 (559)
++|++|++++|.+. ..+|..+..+++|++|++++|.. +.+ ..+..+++|+.|++++|.....+|..+..+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-TSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCC-CCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCC-CCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45666666666554 34555556666666666666632 333 3444455666666666654443554445555555555
Q ss_pred ecC-CCCCC---cCCCCCCCCceeeecCcc
Q 035732 394 IGG-ALPSL---EEDGLPTNLQLLNIEGNM 419 (559)
Q Consensus 394 l~~-~l~~~---~~~~~~~~L~~L~l~~~~ 419 (559)
+++ .+..+ .....+++|++|++++|.
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCc
Confidence 554 33332 112333444444444443
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.06 E-value=2.7e-12 Score=133.36 Aligned_cols=100 Identities=15% Similarity=0.157 Sum_probs=48.6
Q ss_pred CccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEecc
Q 035732 292 SLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIY 371 (559)
Q Consensus 292 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 371 (559)
.|+.|++++|... .+|. +..+++|+.|++++|.+. .+|..+..+++|+.|++++|.. +.+| .+..+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l-~~lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL-ENVD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCC-CCCG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCC-CCCc-ccCCCCCCcEEECC
Confidence 3555555554322 2332 555555555555555443 4455555555555555555532 2344 34444555555555
Q ss_pred cccccccc-ccccccCCCcceEEecC
Q 035732 372 DCKRLEAL-PKGLHNLTSLQHLTIGG 396 (559)
Q Consensus 372 ~~~~~~~~-~~~l~~l~~L~~L~l~~ 396 (559)
+|...... |..+..+++|+.|++++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecC
Confidence 55432222 44444444444444444
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.03 E-value=1.3e-09 Score=96.68 Aligned_cols=107 Identities=19% Similarity=0.206 Sum_probs=76.0
Q ss_pred CCCccEEEEcCCCCccchHH-hhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEE
Q 035732 290 PPSLKSLYVYGCSKVESIAE-RLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRL 368 (559)
Q Consensus 290 ~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 368 (559)
+.++++|++++|......+. .+..+++|++|++++|.+....|..+.++++|++|++++|......+..+..+++|+.|
T Consensus 28 ~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 35788888888765444332 37788888888888887777667778888888888888885544444446667788888
Q ss_pred eccccccccccccccccCCCcceEEecC
Q 035732 369 EIYDCKRLEALPKGLHNLTSLQHLTIGG 396 (559)
Q Consensus 369 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 396 (559)
++++|......|..+..+++|+.|++++
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 108 NLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp ECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred ECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 8888876555566666666666666655
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.01 E-value=2.4e-10 Score=99.86 Aligned_cols=105 Identities=20% Similarity=0.202 Sum_probs=66.5
Q ss_pred CCceeeecCccchhhhhhhcccccccCccccEEEEeecCCCceeecccccccccccccccccceeecccccccccccc--
Q 035732 409 NLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSS-- 486 (559)
Q Consensus 409 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-- 486 (559)
+|++|++++|. +... ..+..+++|+.|++++|. +..++... +..+++|+.|++++| .+..++.
T Consensus 43 ~L~~L~Ls~N~-l~~~-----~~l~~l~~L~~L~Ls~N~--l~~~~~~~------~~~l~~L~~L~L~~N-~i~~~~~~~ 107 (176)
T 1a9n_A 43 QFDAIDFSDNE-IRKL-----DGFPLLRRLKTLLVNNNR--ICRIGEGL------DQALPDLTELILTNN-SLVELGDLD 107 (176)
T ss_dssp CCSEEECCSSC-CCEE-----CCCCCCSSCCEEECCSSC--CCEECSCH------HHHCTTCCEEECCSC-CCCCGGGGG
T ss_pred CCCEEECCCCC-CCcc-----cccccCCCCCEEECCCCc--ccccCcch------hhcCCCCCEEECCCC-cCCcchhhH
Confidence 56666666665 3322 245666777777777663 34444322 456677778888773 4566665
Q ss_pred ccccCCCcCeEEecCCCCCcccCCC-----CCCCCceEEEecCChhhh
Q 035732 487 SIVDLQNLTLLQLWGCPKLKYFPKK-----GLPSSLLELDIVGCPLIE 529 (559)
Q Consensus 487 ~~~~~~~L~~L~l~~c~~l~~l~~~-----~~~~~L~~L~l~~c~~l~ 529 (559)
.+..+++|+.|++++ +.++.+|.. ..+++|+.|++++|+.-+
T Consensus 108 ~l~~l~~L~~L~l~~-N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 108 PLASLKSLTYLCILR-NPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp GGGGCTTCCEEECCS-SGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred hhhcCCCCCEEEecC-CCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 566778888888888 456666652 225788888888876544
No 127
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.00 E-value=3.6e-08 Score=97.81 Aligned_cols=255 Identities=16% Similarity=0.204 Sum_probs=140.4
Q ss_pred ccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccCC-CCCCCCccceeeccCCCCccccC--
Q 035732 91 DICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLPQ-SSFSLSSLREIEIYNCSSLVSFP-- 167 (559)
Q Consensus 91 ~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-- 167 (559)
.+..++.+.+.. .++.+....|.. .+|+.+.+..+ +..++. .|.+ .+|+.+.+.. .+..++
T Consensus 111 ~~~~l~~i~ip~--~i~~I~~~aF~~---------~~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~ 174 (401)
T 4fdw_A 111 ILKGYNEIILPN--SVKSIPKDAFRN---------SQIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPS--TLEQLKED 174 (401)
T ss_dssp ECSSCSEEECCT--TCCEECTTTTTT---------CCCSEEECCTT--CCEECTTTTTT-CCCCEEECCT--TCCEECSS
T ss_pred ecCCccEEEECC--ccCEehHhhccc---------CCccEEEeCCC--ccEECHHhcCC-CCceEEEeCC--CccEehHH
Confidence 356667676654 566665543321 35677776654 344443 3444 3577777764 344444
Q ss_pred CCCCCCCccEEEecccCCCcccCcccccCCCCCccEEecCCCCCccccccc--cCCCCcceEEeecccCccccchhhccc
Q 035732 168 EVALPSKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCRWLTFIAAV--QLPSSLKKLQIRRCDNIRTLTAEEGIQ 245 (559)
Q Consensus 168 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~ 245 (559)
.+..+++|+.+++.++. ++.++...+. ..+|+.+.+..+ ++.++.. ..+++|+.+.+.+ +++.++...+.
T Consensus 175 aF~~c~~L~~l~l~~n~-l~~I~~~aF~--~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~- 246 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTK-ITKLPASTFV--YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFR- 246 (401)
T ss_dssp TTTTCTTCCEEECTTSC-CSEECTTTTT--TCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCT--TCCEECTTTTT-
T ss_pred HhhCcccCCeeecCCCc-ceEechhhEe--ecccCEEEeCCc--hheehhhHhhCCCCCCEEecCC--CccCccccccc-
Confidence 36667777777777665 5666655433 367777777643 5555444 4466777777764 34444433222
Q ss_pred cccccccccCCccEEEEecCCCccccccCCCCCccccccccCCCCCCccEEEEcCCCCccchHHhhccCCCCceEEeeec
Q 035732 246 CSSGRRYTSSLLEELEIWDCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRC 325 (559)
Q Consensus 246 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 325 (559)
.++|+.+.+.. .++. .-...+.+|++|+.+.+.++
T Consensus 247 --------~~~L~~i~lp~--~i~~-----------------------------------I~~~aF~~c~~L~~l~l~~~ 281 (401)
T 4fdw_A 247 --------ESGITTVKLPN--GVTN-----------------------------------IASRAFYYCPELAEVTTYGS 281 (401)
T ss_dssp --------TCCCSEEEEET--TCCE-----------------------------------ECTTTTTTCTTCCEEEEESS
T ss_pred --------cCCccEEEeCC--CccE-----------------------------------EChhHhhCCCCCCEEEeCCc
Confidence 12355555432 1221 11234455556666655554
Q ss_pred Ccc-----ccccccCCCCCccceeecccccCceecCC-CCCCCCCccEEecccccccccc-ccccccCCCcceEEecC-C
Q 035732 326 GTL-----KILPSGLHNLRQLQEISIQICENLVSFPE-GGLPCAKLTRLEIYDCKRLEAL-PKGLHNLTSLQHLTIGG-A 397 (559)
Q Consensus 326 ~~~-----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~-~ 397 (559)
... ..-...|.++++|+.+.+.++ ++.++. .+..|++|+.+.+..+ +..+ ...|.++ +|+.+++.+ .
T Consensus 282 ~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 282 TFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp CCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSS
T ss_pred cccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 332 122345666777777777642 445544 3455667777777543 3333 3456677 777777776 4
Q ss_pred CCCCcC---CCCCCCCceeeecCcc
Q 035732 398 LPSLEE---DGLPTNLQLLNIEGNM 419 (559)
Q Consensus 398 l~~~~~---~~~~~~L~~L~l~~~~ 419 (559)
...+.. .+...+++.|.+..+.
T Consensus 357 ~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 357 PPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred CcccccccccCCCCCccEEEeCHHH
Confidence 444332 1223577888887765
No 128
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.00 E-value=1.9e-08 Score=100.08 Aligned_cols=64 Identities=11% Similarity=0.081 Sum_probs=34.6
Q ss_pred cCchhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccC-CCCCCCCccceeeccC
Q 035732 84 SHDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLP-QSSFSLSSLREIEIYN 159 (559)
Q Consensus 84 ~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~ 159 (559)
+....|.++.+|+.+.+.. .++.+... ++..+ .+|+.+++.++ +..++ ..|..+.+|+.+.+..
T Consensus 62 Ig~~AF~~c~~L~~i~lp~--~i~~I~~~----aF~~c----~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPS--TVREIGEF----AFENC----SKLEIINIPDS--VKMIGRCTFSGCYALKSILLPL 126 (394)
T ss_dssp ECTTTTTTCTTEEEEECCT--TCCEECTT----TTTTC----TTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCT
T ss_pred hHHHHhhCCCCceEEEeCC--CccCcchh----HhhCC----CCCcEEEeCCC--ceEccchhhcccccchhhcccC
Confidence 5556666666677666653 45555443 23333 66666666543 23332 3355566666655543
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.99 E-value=5.4e-10 Score=97.63 Aligned_cols=103 Identities=16% Similarity=0.120 Sum_probs=56.8
Q ss_pred CCccEEEeccccCccEEeccCchhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccCC
Q 035732 65 PKLEELEIKNIKNETYIWKSHDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLPQ 144 (559)
Q Consensus 65 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~~ 144 (559)
++|+.|+++++ .++. + ..+..+++|++|+++++ .++.++++ .+..+ ++|++|++++|.. ..+|.
T Consensus 42 ~~L~~L~Ls~N-~l~~---~--~~l~~l~~L~~L~Ls~N-~l~~~~~~----~~~~l----~~L~~L~L~~N~i-~~~~~ 105 (176)
T 1a9n_A 42 DQFDAIDFSDN-EIRK---L--DGFPLLRRLKTLLVNNN-RICRIGEG----LDQAL----PDLTELILTNNSL-VELGD 105 (176)
T ss_dssp TCCSEEECCSS-CCCE---E--CCCCCCSSCCEEECCSS-CCCEECSC----HHHHC----TTCCEEECCSCCC-CCGGG
T ss_pred CCCCEEECCCC-CCCc---c--cccccCCCCCEEECCCC-cccccCcc----hhhcC----CCCCEEECCCCcC-Ccchh
Confidence 46677777666 4444 2 23556666777777664 56655543 12444 6666777766644 45554
Q ss_pred --CCCCCCccceeeccCCCCccccCC-----CCCCCCccEEEecccC
Q 035732 145 --SSFSLSSLREIEIYNCSSLVSFPE-----VALPSKLKKIRISYCG 184 (559)
Q Consensus 145 --~~~~l~~L~~L~l~~~~~~~~~~~-----~~~~~~L~~L~l~~~~ 184 (559)
.+..+++|++|++++|.. ..+|. +..+++|+.|++++|.
T Consensus 106 ~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 106 LDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp GGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred hHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCCcCC
Confidence 455666666666666533 23332 3344555555555443
No 130
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.97 E-value=2.5e-08 Score=98.95 Aligned_cols=213 Identities=11% Similarity=0.135 Sum_probs=134.1
Q ss_pred CccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCC-CCCCCCCccEEec
Q 035732 292 SLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPE-GGLPCAKLTRLEI 370 (559)
Q Consensus 292 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l 370 (559)
+|+.+.+.. .....-...+.+|.+|+.+++.++.... ++.......+|+.+.+..+ ++.++. .+..+++|+.+.+
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~-I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITK-LPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSE-ECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceE-echhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEec
Confidence 455555543 2222223456677777777776654433 3333333567777777643 445544 4556667777777
Q ss_pred cccccccccc-cccccCCCcceEEecCCCCCCcC--CCCCCCCceeeecCccchhh---hhhhcccccccCccccEEEEe
Q 035732 371 YDCKRLEALP-KGLHNLTSLQHLTIGGALPSLEE--DGLPTNLQLLNIEGNMEIWK---SMIERGRGFHRFSSLRRLTIS 444 (559)
Q Consensus 371 ~~~~~~~~~~-~~l~~l~~L~~L~l~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~---~~~~~~~~~~~l~~L~~L~l~ 444 (559)
..+ ++.++ ..|.+ .+|+.+.+...+..++. +..+++|+++++.++..... .+.. ..|.+|++|+.+++.
T Consensus 234 ~~~--l~~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~--~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 234 PEN--VSTIGQEAFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP--YCLEGCPKLARFEIP 308 (401)
T ss_dssp CTT--CCEECTTTTTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT--TTTTTCTTCCEECCC
T ss_pred CCC--ccCcccccccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECH--HHhhCCccCCeEEeC
Confidence 653 34443 34444 67777777655555433 44567888888876652100 1222 578899999999987
Q ss_pred ecCCCceeecccccccccccccccccceeecccccccccccc-ccccCCCcCeEEecCCCCCcccCCCC---CCCCceEE
Q 035732 445 RCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSS-SIVDLQNLTLLQLWGCPKLKYFPKKG---LPSSLLEL 520 (559)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~l~~~~---~~~~L~~L 520 (559)
. .+..+.... |.++++|+.+.+.+ .++.+.. .|.++ +|+++++.+ +.+..++... ++.+++.|
T Consensus 309 ~---~i~~I~~~a------F~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~-n~~~~l~~~~F~~~~~~l~~l 375 (401)
T 4fdw_A 309 E---SIRILGQGL------LGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEG-TTPPQVFEKVWYGFPDDITVI 375 (401)
T ss_dssp T---TCCEECTTT------TTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECC-SSCCBCCCSSCCCSCTTCCEE
T ss_pred C---ceEEEhhhh------hcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcC-CCCcccccccccCCCCCccEE
Confidence 4 366666644 88899999999965 3666654 46777 999999998 5677776643 34688899
Q ss_pred EecCCh
Q 035732 521 DIVGCP 526 (559)
Q Consensus 521 ~l~~c~ 526 (559)
++....
T Consensus 376 ~vp~~~ 381 (401)
T 4fdw_A 376 RVPAES 381 (401)
T ss_dssp EECGGG
T ss_pred EeCHHH
Confidence 987643
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.96 E-value=1.6e-10 Score=124.07 Aligned_cols=117 Identities=15% Similarity=0.172 Sum_probs=87.8
Q ss_pred chHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEecccccccccccccccc
Q 035732 306 SIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDCKRLEALPKGLHN 385 (559)
Q Consensus 306 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 385 (559)
..+..+..+..|+.|++++|.+. .++..+..+++|++|++++|.. ..+|..+..+++|+.|++++|.. ..+|..+..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRL-TSLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCC-SCCCGGGGGGTTCCEEECTTSCC-SSCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcC-cccChhhhCCCCCCEEeCcCCcC-CccChhhcC
Confidence 44567788888999999888765 5676777888999999998854 47777777788899999998874 477888888
Q ss_pred CCCcceEEecC-CCCCCcC-CCCCCCCceeeecCccchhhhhh
Q 035732 386 LTSLQHLTIGG-ALPSLEE-DGLPTNLQLLNIEGNMEIWKSMI 426 (559)
Q Consensus 386 l~~L~~L~l~~-~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~ 426 (559)
+++|++|++++ .+..+|. +..+++|++|+|++|. +...++
T Consensus 292 l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~p 333 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP-LEKQFL 333 (727)
T ss_dssp GTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSC-CCSHHH
T ss_pred CCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCc-cCCCCh
Confidence 99999999988 7777765 5677889999999988 444443
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.96 E-value=3.9e-09 Score=93.50 Aligned_cols=106 Identities=19% Similarity=0.215 Sum_probs=63.8
Q ss_pred CCCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEe
Q 035732 290 PPSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLE 369 (559)
Q Consensus 290 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 369 (559)
|.++++|++++|.. ..+|..+.++++|++|++++|.+....+..+.++++|++|++++|......+..+..+++|+.|+
T Consensus 30 ~~~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 30 PRDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp CTTCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence 35778888877654 34556777777777777777776665555667777777777777643332233455556677777
Q ss_pred ccccccccccccccccCCCcceEEecC
Q 035732 370 IYDCKRLEALPKGLHNLTSLQHLTIGG 396 (559)
Q Consensus 370 l~~~~~~~~~~~~l~~l~~L~~L~l~~ 396 (559)
+++|......+..+..+++|+.|++++
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 109 LHGNDISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CCCCCCCeeChhhhhcCccccEEEeCC
Confidence 766653322222344444444444433
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.93 E-value=3.2e-10 Score=121.62 Aligned_cols=111 Identities=20% Similarity=0.165 Sum_probs=63.8
Q ss_pred CchhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccCCCCCCCCccceeeccCCCCcc
Q 035732 85 HDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLPQSSFSLSSLREIEIYNCSSLV 164 (559)
Q Consensus 85 ~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~ 164 (559)
++..+..++.|++|+|+++ .+..++.+ +..+ ++|++|+|++|.. ..+|..+..+++|++|+|++|...
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n-~l~~l~~~-----~~~l----~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~Ls~N~l~- 283 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNL-QIFNISAN-----IFKY----DFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLT- 283 (727)
T ss_dssp ------CCCCCCEEECTTS-CCSCCCGG-----GGGC----CSCSCCBCTTSCC-SCCCGGGGGGTTCCEEECTTSCCS-
T ss_pred ChhhhccCCCCcEEECCCC-CCCCCChh-----hcCC----CCCCEEEeeCCcC-cccChhhhCCCCCCEEeCcCCcCC-
Confidence 3445566667777777664 45555543 2244 6677777776644 466666666777777777666433
Q ss_pred ccC-CCCCCCCccEEEecccCCCcccCcccccCCCCCccEEecCCCC
Q 035732 165 SFP-EVALPSKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHCR 210 (559)
Q Consensus 165 ~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 210 (559)
.+| .+..+++|++|++++|. +..+|..+ ..+++|++|++++|.
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~--~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDNM-VTTLPWEF--GNLCNLQFLGVEGNP 327 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSSC-CCCCCSST--TSCTTCCCEECTTSC
T ss_pred ccChhhcCCCCCCEEECCCCC-CCccChhh--hcCCCccEEeCCCCc
Confidence 455 35666667777776665 45555553 344666666666664
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.92 E-value=4.7e-09 Score=92.99 Aligned_cols=105 Identities=21% Similarity=0.345 Sum_probs=64.8
Q ss_pred CCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCCCceeecccccccccccccccccceeecccccccccccc
Q 035732 407 PTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTALPLLASLTSLGISRFPNLERLSS 486 (559)
Q Consensus 407 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 486 (559)
+++|++|++++|. ++.. + ..+..+++|+.|++++|. +..++... |..+++|+.|++++ +.++.++.
T Consensus 30 ~~~l~~L~L~~n~-i~~i-p---~~~~~l~~L~~L~Ls~N~--i~~i~~~~------f~~l~~L~~L~Ls~-N~l~~i~~ 95 (193)
T 2wfh_A 30 PRDVTELYLDGNQ-FTLV-P---KELSNYKHLTLIDLSNNR--ISTLSNQS------FSNMTQLLTLILSY-NRLRCIPP 95 (193)
T ss_dssp CTTCCEEECCSSC-CCSC-C---GGGGGCTTCCEEECCSSC--CCCCCTTT------TTTCTTCCEEECCS-SCCCBCCT
T ss_pred CCCCCEEECCCCc-Cchh-H---HHhhcccCCCEEECCCCc--CCEeCHhH------ccCCCCCCEEECCC-CccCEeCH
Confidence 3566666666665 3321 1 246667777777777663 34444332 66677777777777 34555543
Q ss_pred -ccccCCCcCeEEecCCCCCcccCCCCC--CCCceEEEecCCh
Q 035732 487 -SIVDLQNLTLLQLWGCPKLKYFPKKGL--PSSLLELDIVGCP 526 (559)
Q Consensus 487 -~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~ 526 (559)
.+..+++|+.|++++ |.++.++...+ +++|+.|++++|+
T Consensus 96 ~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 96 RTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred HHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCC
Confidence 456677777777777 56777766433 4677777777765
No 135
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.92 E-value=1.7e-07 Score=93.20 Aligned_cols=128 Identities=9% Similarity=0.041 Sum_probs=62.1
Q ss_pred CCCCCCccEEEeccccCccEEeccCchhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCc
Q 035732 61 KPRIPKLEELEIKNIKNETYIWKSHDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLV 140 (559)
Q Consensus 61 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~ 140 (559)
+..+.+|+++.+.. +++. +....|.+|.+|+.+++.. .++.+.... +..+ .+|+.+.+..+ +.
T Consensus 67 F~~c~~L~~i~lp~--~i~~---I~~~aF~~c~~L~~i~lp~--~l~~I~~~a----F~~c----~~L~~i~~p~~--l~ 129 (394)
T 4fs7_A 67 FQGCRKVTEIKIPS--TVRE---IGEFAFENCSKLEIINIPD--SVKMIGRCT----FSGC----YALKSILLPLM--LK 129 (394)
T ss_dssp TTTCTTEEEEECCT--TCCE---ECTTTTTTCTTCCEECCCT--TCCEECTTT----TTTC----TTCCCCCCCTT--CC
T ss_pred hhCCCCceEEEeCC--CccC---cchhHhhCCCCCcEEEeCC--CceEccchh----hccc----ccchhhcccCc--ee
Confidence 44566777777753 3555 6666777777777777754 355555432 2223 55665555442 12
Q ss_pred ccC-CCCCCCCccceeeccCCCCccccCCCCCCCCccEEEecccCCCcccCcccccCCCCCccEEecCCC
Q 035732 141 KLP-QSSFSLSSLREIEIYNCSSLVSFPEVALPSKLKKIRISYCGALKSLPEAWMCDTNSSLEILNIEHC 209 (559)
Q Consensus 141 ~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 209 (559)
.+. ..|..+..++......... ..-..+..+.+|+.+.+.++ +..++...+ .++.+|+.+.+..+
T Consensus 130 ~i~~~aF~~~~~~~~~~~~~~~~-i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F-~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 130 SIGVEAFKGCDFKEITIPEGVTV-IGDEAFATCESLEYVSLPDS--METLHNGLF-SGCGKLKSIKLPRN 195 (394)
T ss_dssp EECTTTTTTCCCSEEECCTTCCE-ECTTTTTTCTTCCEEECCTT--CCEECTTTT-TTCTTCCBCCCCTT
T ss_pred eecceeeecccccccccCccccc-cchhhhcccCCCcEEecCCc--cceeccccc-cCCCCceEEEcCCC
Confidence 222 2233333222222221111 11113556666777766542 333433322 34455666666543
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.88 E-value=1.1e-08 Score=89.27 Aligned_cols=82 Identities=16% Similarity=0.076 Sum_probs=39.1
Q ss_pred CCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCC-CCCCCCCccEEe
Q 035732 291 PSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPE-GGLPCAKLTRLE 369 (559)
Q Consensus 291 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~ 369 (559)
+++++|+++++......+..+..+++|++|++++|.+....+..+..+++|++|++++|.. +.++. .+..+++|+.|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL-QSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc-cccCHHHhhCCcccCEEE
Confidence 4566666666554333333445555555555555544433333344555555555555432 22222 223344455555
Q ss_pred cccc
Q 035732 370 IYDC 373 (559)
Q Consensus 370 l~~~ 373 (559)
+++|
T Consensus 107 l~~N 110 (177)
T 2o6r_A 107 LDTN 110 (177)
T ss_dssp CCSS
T ss_pred CcCC
Confidence 5544
No 137
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.87 E-value=9.9e-09 Score=90.90 Aligned_cols=86 Identities=13% Similarity=0.085 Sum_probs=69.5
Q ss_pred CCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEec
Q 035732 291 PSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEI 370 (559)
Q Consensus 291 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 370 (559)
++|++|++++|......+..+.++++|++|++++|.+....+..+.++++|++|++++|......|..+..+++|+.|++
T Consensus 54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (192)
T 1w8a_A 54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133 (192)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEe
Confidence 57888888888776666778888899999999998877766667888899999999998665566667777888999999
Q ss_pred cccccc
Q 035732 371 YDCKRL 376 (559)
Q Consensus 371 ~~~~~~ 376 (559)
++|+..
T Consensus 134 ~~N~l~ 139 (192)
T 1w8a_A 134 ASNPFN 139 (192)
T ss_dssp TTCCBC
T ss_pred CCCCcc
Confidence 988643
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.83 E-value=3.3e-11 Score=107.67 Aligned_cols=10 Identities=40% Similarity=0.418 Sum_probs=5.2
Q ss_pred ccCCCcCeEE
Q 035732 489 VDLQNLTLLQ 498 (559)
Q Consensus 489 ~~~~~L~~L~ 498 (559)
..+++|+.|+
T Consensus 171 ~~l~~L~~Ld 180 (198)
T 1ds9_A 171 KRLPNLKKLD 180 (198)
T ss_dssp HHCSSCSEEC
T ss_pred HhCCCcEEEC
Confidence 4455555554
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.81 E-value=2.6e-08 Score=86.94 Aligned_cols=104 Identities=21% Similarity=0.175 Sum_probs=63.0
Q ss_pred CCCceEEeeecCccccccccCCCCCccceeecccccCceecCC-CCCCCCCccEEeccccccccccccccccCCCcceEE
Q 035732 315 TSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPE-GGLPCAKLTRLEIYDCKRLEALPKGLHNLTSLQHLT 393 (559)
Q Consensus 315 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 393 (559)
++|++|++++|.+....+..+..+++|++|++++|.. +.++. .+..+++|+.|++++|......+..+..+++|+.|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcc-eEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 5777888877766544444556777777777777743 44443 345566777777777754433333456666666666
Q ss_pred ecC-CCCCCcC--CCCCCCCceeeecCcc
Q 035732 394 IGG-ALPSLEE--DGLPTNLQLLNIEGNM 419 (559)
Q Consensus 394 l~~-~l~~~~~--~~~~~~L~~L~l~~~~ 419 (559)
+++ .+..++. ...+++|++|++++|+
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 666 5555544 2334556666666555
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.77 E-value=5.5e-10 Score=99.66 Aligned_cols=123 Identities=16% Similarity=0.205 Sum_probs=79.5
Q ss_pred CccEEEEcCC-CCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEec
Q 035732 292 SLKSLYVYGC-SKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEI 370 (559)
Q Consensus 292 ~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 370 (559)
.++...+.+. ..++.++..+..+++|++|++++|.+.. +| .+..+++|++|++++|. +..+|.....+++|+.|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEEC
Confidence 3455555443 1244556677788888888888876554 55 66777888888888774 3455554444567888888
Q ss_pred cccccccccccccccCCCcceEEecC-CCCCCcC---CCCCCCCceeeecCcc
Q 035732 371 YDCKRLEALPKGLHNLTSLQHLTIGG-ALPSLEE---DGLPTNLQLLNIEGNM 419 (559)
Q Consensus 371 ~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~---~~~~~~L~~L~l~~~~ 419 (559)
++|.. ..+| .+..+++|+.|++++ .+..++. ...+++|++|++++|+
T Consensus 101 ~~N~l-~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 101 SYNQI-ASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp EEEEC-CCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred cCCcC-CcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 87753 3454 466677777777776 5555432 4456677777777776
No 141
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.59 E-value=9.4e-06 Score=80.52 Aligned_cols=104 Identities=17% Similarity=0.271 Sum_probs=52.0
Q ss_pred hhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCC-CCCCCCCccEEeccccccccccc-cccccCC
Q 035732 310 RLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPE-GGLPCAKLTRLEIYDCKRLEALP-KGLHNLT 387 (559)
Q Consensus 310 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~ 387 (559)
.+.++..|+.+.+.... ...-...+.++++|+.+.+.. .+..++. .+..|.+|+.+.+..+ ++.+. ..|.+++
T Consensus 260 aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCT
T ss_pred eeeecccccEEeccccc-ceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCC
Confidence 45566666666664321 112233455566666666643 2344443 3445566666666442 33332 3456666
Q ss_pred CcceEEecCCCCCCcC--CCCCCCCceeeecCc
Q 035732 388 SLQHLTIGGALPSLEE--DGLPTNLQLLNIEGN 418 (559)
Q Consensus 388 ~L~~L~l~~~l~~~~~--~~~~~~L~~L~l~~~ 418 (559)
+|+.+.+...++.+.. +..+.+|+.+++.++
T Consensus 335 ~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 335 QLERIAIPSSVTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TCCEEEECTTCCBCCGGGGTTCTTCCEEEESSC
T ss_pred CCCEEEECcccCEEhHhHhhCCCCCCEEEECCc
Confidence 6666666443333322 233455555555544
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.56 E-value=1.8e-07 Score=80.76 Aligned_cols=83 Identities=18% Similarity=0.218 Sum_probs=43.0
Q ss_pred CCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCC-CCCCCCCccEEe
Q 035732 291 PSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPE-GGLPCAKLTRLE 369 (559)
Q Consensus 291 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~ 369 (559)
.++++|++++|......+..+.++++|++|++++|.+....+..+..+++|++|++++|. ++.++. .+..+++|+.|+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEE
Confidence 456666666665444445555556666666666655443333334555555555555553 233333 234444555555
Q ss_pred ccccc
Q 035732 370 IYDCK 374 (559)
Q Consensus 370 l~~~~ 374 (559)
+++|+
T Consensus 109 L~~N~ 113 (170)
T 3g39_A 109 LLNNP 113 (170)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 55553
No 143
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.52 E-value=1.4e-05 Score=79.20 Aligned_cols=102 Identities=19% Similarity=0.242 Sum_probs=48.5
Q ss_pred cccCCCcceEEecCCCCCCcC--CCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCCCceeeccccccc
Q 035732 383 LHNLTSLQHLTIGGALPSLEE--DGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRL 460 (559)
Q Consensus 383 l~~l~~L~~L~l~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 460 (559)
|.++++|+.+.+...+..++. ...+.+|+++++..+ ++. +.. ..|.+|.+|+.+.+..+ +..+...
T Consensus 284 F~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~--v~~-I~~--~aF~~C~~L~~i~ip~s---v~~I~~~---- 351 (394)
T 4gt6_A 284 FMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEG--ITQ-ILD--DAFAGCEQLERIAIPSS---VTKIPES---- 351 (394)
T ss_dssp TTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCE-ECT--TTTTTCTTCCEEEECTT---CCBCCGG----
T ss_pred cccccccccccCCCcccccCceeecCCCCcCEEEeCCc--ccE-ehH--hHhhCCCCCCEEEECcc---cCEEhHh----
Confidence 344444444444333333222 223455555555432 111 111 46777778888877542 4444443
Q ss_pred ccccccccccceeeccccccccccccccccCCCcCeEEecC
Q 035732 461 GTALPLLASLTSLGISRFPNLERLSSSIVDLQNLTLLQLWG 501 (559)
Q Consensus 461 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~ 501 (559)
+|.++.+|+.+++.+... . ...+..+.+|+.+.+..
T Consensus 352 --aF~~C~~L~~i~~~~~~~--~-~~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 352 --AFSNCTALNNIEYSGSRS--Q-WNAISTDSGLQNLPVAP 387 (394)
T ss_dssp --GGTTCTTCCEEEESSCHH--H-HHTCBCCCCC-------
T ss_pred --HhhCCCCCCEEEECCcee--e-hhhhhccCCCCEEEeCC
Confidence 377778888888877321 1 12345566677766654
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.51 E-value=3.4e-07 Score=79.41 Aligned_cols=80 Identities=24% Similarity=0.376 Sum_probs=36.5
Q ss_pred CCCceEEeeecCccccccccCCCCCccceeecccccCceecCCC-CCCCCCccEEecccccccccccc-ccccCCCcceE
Q 035732 315 TSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEG-GLPCAKLTRLEIYDCKRLEALPK-GLHNLTSLQHL 392 (559)
Q Consensus 315 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L 392 (559)
++|++|++++|.+....+..+.++++|++|++++| .++.+|.. +..+++|+.|++++|... .+|. .+..+++|+.|
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L 110 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHI 110 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCccc-eeCHHHhccccCCCEE
Confidence 34444444444443333444444555555555554 22333332 234445555555555432 2332 35555555555
Q ss_pred EecC
Q 035732 393 TIGG 396 (559)
Q Consensus 393 ~l~~ 396 (559)
++++
T Consensus 111 ~L~~ 114 (174)
T 2r9u_A 111 YLYN 114 (174)
T ss_dssp ECCS
T ss_pred EeCC
Confidence 5555
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.46 E-value=4.1e-07 Score=78.54 Aligned_cols=100 Identities=21% Similarity=0.246 Sum_probs=49.4
Q ss_pred ccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCC-CCCCCCccEEecc
Q 035732 293 LKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEG-GLPCAKLTRLEIY 371 (559)
Q Consensus 293 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~ 371 (559)
.+.++++++. +..+|..+ .++|++|++++|.+....+..+.++++|++|++++|. ++.++.. +..+++|+.|+++
T Consensus 11 ~~~l~~s~n~-l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKS-LASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSC-CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCC-cCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECC
Confidence 3455555543 22233222 2566666666666555445556666666666666663 3334332 3445566666666
Q ss_pred ccccccccccccccCCCcceEEecC
Q 035732 372 DCKRLEALPKGLHNLTSLQHLTIGG 396 (559)
Q Consensus 372 ~~~~~~~~~~~l~~l~~L~~L~l~~ 396 (559)
+|......+..+..+++|+.|++++
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCC
Confidence 6543222222344444444444443
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.45 E-value=5.5e-07 Score=78.03 Aligned_cols=83 Identities=17% Similarity=0.203 Sum_probs=40.8
Q ss_pred CCccEEEEcCCCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCC-CCCCCCccEEe
Q 035732 291 PSLKSLYVYGCSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEG-GLPCAKLTRLE 369 (559)
Q Consensus 291 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~ 369 (559)
++|++|++++|......+..+.++++|++|++++|.+....+..+..+++|++|++++|. +..++.. +..+++|+.|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc-cceeCHHHhccccCCCEEE
Confidence 455555555555444434455555555555555554433222233455555555555553 2333332 44445555555
Q ss_pred ccccc
Q 035732 370 IYDCK 374 (559)
Q Consensus 370 l~~~~ 374 (559)
+++|+
T Consensus 112 L~~N~ 116 (174)
T 2r9u_A 112 LYNNP 116 (174)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 55554
No 147
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.41 E-value=1.7e-07 Score=79.96 Aligned_cols=90 Identities=8% Similarity=0.159 Sum_probs=65.0
Q ss_pred CCccEEEeccccCccEEeccCchhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhc---cCceeEEecccCCCCcc
Q 035732 65 PKLEELEIKNIKNETYIWKSHDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCEL---SCRLEYLGLTSCHGLVK 141 (559)
Q Consensus 65 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~---~~~L~~L~l~~~~~l~~ 141 (559)
..|++|++++|. +++ .....+..+++|++|+|++|..+++ .++..++.. +++|++|+|++|..++.
T Consensus 61 ~~L~~LDLs~~~-Itd---~GL~~L~~~~~L~~L~L~~C~~ItD-------~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMS---IGFDHMEGLQYVEKIRLCKCHYIED-------GCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CCEEEEEEESCC-CCG---GGGGGGTTCSCCCEEEEESCTTCCH-------HHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCCC-ccH---HHHHHhcCCCCCCEEEeCCCCccCH-------HHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 469999999995 666 5555567899999999999988887 456666542 46799999999976552
Q ss_pred c-CCCCCCCCccceeeccCCCCccc
Q 035732 142 L-PQSSFSLSSLREIEIYNCSSLVS 165 (559)
Q Consensus 142 ~-~~~~~~l~~L~~L~l~~~~~~~~ 165 (559)
- -..+..+++|++|++++|+.++.
T Consensus 130 ~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 130 KGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHHHhcCCCCCEEECCCCCCCCc
Confidence 1 12345677777777777765543
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.30 E-value=3.4e-08 Score=96.93 Aligned_cols=59 Identities=15% Similarity=0.229 Sum_probs=25.8
Q ss_pred CCccEEEEcCCCCccchHHh----hc-cCCCCceEEeeecCccccccccC-CCCCccceeecccc
Q 035732 291 PSLKSLYVYGCSKVESIAER----LD-NNTSLEKISIKRCGTLKILPSGL-HNLRQLQEISIQIC 349 (559)
Q Consensus 291 ~~L~~L~l~~~~~~~~~~~~----~~-~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~ 349 (559)
+.+++|++++|......... +. ...+|++|++++|.+.......+ ..+++|++|++++|
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n 136 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN 136 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC
Confidence 34555555555433222111 11 22456666666655433211111 22345556666555
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.27 E-value=1.1e-06 Score=74.96 Aligned_cols=91 Identities=14% Similarity=0.142 Sum_probs=67.5
Q ss_pred ccCccEEeecCCCceEeeccCCccCcccceeeecCCcceeecCCCCCCCCCccEEEeccccCccEEeccCchhhhcc---
Q 035732 16 LPAFCKLEIDGCKKVLWRSATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELEIKNIKNETYIWKSHDELLQDI--- 92 (559)
Q Consensus 16 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l--- 92 (559)
-.+|+.|++++|. ++..+... + ..+++|++|++++|..+++ .....+..+
T Consensus 60 ~~~L~~LDLs~~~-Itd~GL~~----------------------L-~~~~~L~~L~L~~C~~ItD---~gL~~L~~~~~~ 112 (176)
T 3e4g_A 60 KYKIQAIDATDSC-IMSIGFDH----------------------M-EGLQYVEKIRLCKCHYIED---GCLERLSQLENL 112 (176)
T ss_dssp CCCEEEEEEESCC-CCGGGGGG----------------------G-TTCSCCCEEEEESCTTCCH---HHHHHHHTCHHH
T ss_pred CceEeEEeCcCCC-ccHHHHHH----------------------h-cCCCCCCEEEeCCCCccCH---HHHHHHHhcccc
Confidence 3579999999997 54333211 1 2589999999999998877 333344443
Q ss_pred -CCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcc
Q 035732 93 -CSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVK 141 (559)
Q Consensus 93 -~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~ 141 (559)
++|++|+|++|..+++ .++..++. +++|++|++++|+.++.
T Consensus 113 ~~~L~~L~Ls~C~~ITD-------~Gl~~L~~-~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 113 QKSMLEMEIISCGNVTD-------KGIIALHH-FRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHCCEEEEESCTTCCH-------HHHHHGGG-CTTCCEEEEESCTTCCC
T ss_pred cCCCCEEEcCCCCcCCH-------HHHHHHhc-CCCCCEEECCCCCCCCc
Confidence 5799999999998887 45656643 49999999999987653
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.24 E-value=1.2e-06 Score=85.13 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=22.2
Q ss_pred cccccceeeccccccccc-----cccccccCCCcCeEEecCC
Q 035732 466 LLASLTSLGISRFPNLER-----LSSSIVDLQNLTLLQLWGC 502 (559)
Q Consensus 466 ~l~~L~~L~l~~~~~l~~-----~~~~~~~~~~L~~L~l~~c 502 (559)
.+++|++|+++.| .+.. ++.++..+++|+.|++++|
T Consensus 277 ~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 277 ILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp SGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred cCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCC
Confidence 3467777777663 3443 3434455678888888775
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.08 E-value=7.6e-06 Score=79.69 Aligned_cols=84 Identities=17% Similarity=0.188 Sum_probs=61.3
Q ss_pred CCccEEEEcC-CCCccchHHhhccCCCCceEEeeecCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEe
Q 035732 291 PSLKSLYVYG-CSKVESIAERLDNNTSLEKISIKRCGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLE 369 (559)
Q Consensus 291 ~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 369 (559)
++|++|++++ |......+..+.++++|+.|++++|.+....+..|.++++|+.|++++|. +..+|........|+.|+
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~L~~l~ 109 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTVQGLSLQELV 109 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CSCCCSTTTCSCCCCEEE
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc-cceeCHHHcccCCceEEE
Confidence 5788888886 66555555678888888888888887776666777888888888888874 455655433332488888
Q ss_pred cccccc
Q 035732 370 IYDCKR 375 (559)
Q Consensus 370 l~~~~~ 375 (559)
+.+|+.
T Consensus 110 l~~N~~ 115 (347)
T 2ifg_A 110 LSGNPL 115 (347)
T ss_dssp CCSSCC
T ss_pred eeCCCc
Confidence 888764
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.08 E-value=0.00081 Score=66.07 Aligned_cols=77 Identities=14% Similarity=0.194 Sum_probs=40.4
Q ss_pred CCccEEEeccccCccEEeccCchhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCcccCC
Q 035732 65 PKLEELEIKNIKNETYIWKSHDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLVKLPQ 144 (559)
Q Consensus 65 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~~~~~ 144 (559)
.+|+++.+.+ .++. ++...|.+|.+|+.++|.. .++.+....|.. .+|+.+.+..+ +..+..
T Consensus 46 ~~i~~v~ip~--~vt~---Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~---------c~l~~i~~~~~--l~~I~~ 107 (379)
T 4h09_A 46 DRISEVRVNS--GITS---IGEANFNSCYNMTKVTVAS--TVTSIGDGAFAD---------TKLQSYTGMER--VKKFGD 107 (379)
T ss_dssp GGCSEEEECT--TEEE---ECTTTTTTCTTCCEEEECT--TCCEECTTTTTT---------CCCCEEEECTT--CCEECT
T ss_pred cCCEEEEeCC--CccC---hHHHHhhCCCCCCEEEeCC--cceEechhhhcC---------CCCceEECCce--eeEecc
Confidence 4566666653 4444 6666677777777777753 456655543211 23555544432 233433
Q ss_pred CCCCCCccceeeccC
Q 035732 145 SSFSLSSLREIEIYN 159 (559)
Q Consensus 145 ~~~~l~~L~~L~l~~ 159 (559)
......+|+.+.+.+
T Consensus 108 ~aF~~~~L~~i~lp~ 122 (379)
T 4h09_A 108 YVFQGTDLDDFEFPG 122 (379)
T ss_dssp TTTTTCCCSEEECCT
T ss_pred ceeccCCcccccCCC
Confidence 332333566666644
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.05 E-value=5.6e-06 Score=80.45 Aligned_cols=141 Identities=16% Similarity=0.069 Sum_probs=82.1
Q ss_pred cccccCCCcceEEecC--CCCCCcCCCCCCCCceeeecCccchhhhhhhcccccccCccccEEEEeecCCCceeeccccc
Q 035732 381 KGLHNLTSLQHLTIGG--ALPSLEEDGLPTNLQLLNIEGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENK 458 (559)
Q Consensus 381 ~~l~~l~~L~~L~l~~--~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 458 (559)
..+..+|+|+.|++++ .+ .++.. ..++|++|++..|....+.... .....+|+|+.|+++.+...... .....
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~~-~~~~L~~L~L~~~~l~~~~l~~--l~~~~lp~L~~L~L~~~~~~~~~-~~~~~ 240 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGKK-PRPNLKSLEIISGGLPDSVVED--ILGSDLPNLEKLVLYVGVEDYGF-DGDMN 240 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCSC-BCTTCSEEEEECSBCCHHHHHH--HHHSBCTTCCEEEEECBCGGGTC-CSCGG
T ss_pred HHHhcCCCCcEEEEeCCCCc-eeccc-cCCCCcEEEEecCCCChHHHHH--HHHccCCCCcEEEEecccccccc-chhHH
Confidence 3445667777777766 22 22232 3688999999888733333322 11237899999999742110000 00000
Q ss_pred cccccc--ccccccceeecccccccccccccc---ccCCCcCeEEecCCCCCcc-----cCCC-CCCCCceEEEecCChh
Q 035732 459 RLGTAL--PLLASLTSLGISRFPNLERLSSSI---VDLQNLTLLQLWGCPKLKY-----FPKK-GLPSSLLELDIVGCPL 527 (559)
Q Consensus 459 ~~~~~~--~~l~~L~~L~l~~~~~l~~~~~~~---~~~~~L~~L~l~~c~~l~~-----l~~~-~~~~~L~~L~l~~c~~ 527 (559)
.+...+ ..+++|+.|++++|......+..+ ..+++|++|+++. +.+.. ++.. .-+++|+.|++++|..
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 000112 246899999999976443222212 3579999999987 56766 3331 1247999999999863
No 154
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.04 E-value=1.4e-05 Score=77.84 Aligned_cols=102 Identities=21% Similarity=0.235 Sum_probs=68.3
Q ss_pred EEEEcCCCCccchHHhhccCCCCceEEeee-cCccccccccCCCCCccceeecccccCceecCCCCCCCCCccEEecccc
Q 035732 295 SLYVYGCSKVESIAERLDNNTSLEKISIKR-CGTLKILPSGLHNLRQLQEISIQICENLVSFPEGGLPCAKLTRLEIYDC 373 (559)
Q Consensus 295 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 373 (559)
.++.+++..+..+|. +..+++|++|++++ |.+....+..|.++++|+.|++++|......+..+..+++|+.|++++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 456666534566777 88888888888886 6655555567788888888888888543333445566778888888887
Q ss_pred cccccccc-ccccCCCcceEEecC-CCC
Q 035732 374 KRLEALPK-GLHNLTSLQHLTIGG-ALP 399 (559)
Q Consensus 374 ~~~~~~~~-~l~~l~~L~~L~l~~-~l~ 399 (559)
.. ..+|. .+..++ |+.|++.+ .+.
T Consensus 91 ~l-~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 AL-ESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CC-SCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred cc-ceeCHHHcccCC-ceEEEeeCCCcc
Confidence 64 34444 344444 77777776 444
No 155
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.02 E-value=9.5e-08 Score=93.77 Aligned_cols=171 Identities=15% Similarity=0.101 Sum_probs=79.9
Q ss_pred CCCCceEEeeecCcccccc----ccCC-CCCccceeecccccCcee-cCCCCCCCCCccEEeccccccccccccccccCC
Q 035732 314 NTSLEKISIKRCGTLKILP----SGLH-NLRQLQEISIQICENLVS-FPEGGLPCAKLTRLEIYDCKRLEALPKGLHNLT 387 (559)
Q Consensus 314 l~~L~~L~l~~~~~~~~~~----~~~~-~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 387 (559)
++.|++|++++|.+..... ..+. ..++|++|++++|..... +......+++|+.|++++|.........+...
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~- 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL- 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH-
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH-
Confidence 4677888888877554221 2222 225677777776643211 11111122356666666664322111111000
Q ss_pred CcceEEecCCCCCCcCCCCCCCCceeeecCccchhh-hhhhcccccccCccccEEEEeecCCCceeeccccccccccccc
Q 035732 388 SLQHLTIGGALPSLEEDGLPTNLQLLNIEGNMEIWK-SMIERGRGFHRFSSLRRLTISRCDDDMVSFPLENKRLGTALPL 466 (559)
Q Consensus 388 ~L~~L~l~~~l~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 466 (559)
+ ....++|++|++++|. +.+ .....+..+...++|++|++++|....... ..+...+..
T Consensus 150 -------------L--~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~----~~L~~~L~~ 209 (372)
T 3un9_A 150 -------------L--LHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGL----ELLAAQLDR 209 (372)
T ss_dssp -------------H--HSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHH----HHHHHHGGG
T ss_pred -------------H--HhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHH----HHHHHHHhc
Confidence 0 0123566666666666 332 111111234556667777777664211110 001112444
Q ss_pred ccccceeeccccccccc-----cccccccCCCcCeEEecCCCCCcc
Q 035732 467 LASLTSLGISRFPNLER-----LSSSIVDLQNLTLLQLWGCPKLKY 507 (559)
Q Consensus 467 l~~L~~L~l~~~~~l~~-----~~~~~~~~~~L~~L~l~~c~~l~~ 507 (559)
.++|++|++++|. +.. ++..+...++|++|++++| .++.
T Consensus 210 ~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~ 253 (372)
T 3un9_A 210 NRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFN-ELSS 253 (372)
T ss_dssp CSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTS-SCCH
T ss_pred CCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCC-CCCH
Confidence 5677777777743 332 2233345677777777774 4543
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.83 E-value=0.0055 Score=60.05 Aligned_cols=104 Identities=14% Similarity=0.106 Sum_probs=65.1
Q ss_pred CCCCCCCccEEEeccccCccEEeccCchhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCC
Q 035732 60 LKPRIPKLEELEIKNIKNETYIWKSHDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGL 139 (559)
Q Consensus 60 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l 139 (559)
-+..+.+|+++.+.. +++. +....|..+ +|+.+.+.. .++.+....|.. .+|+.+.+.++.
T Consensus 64 aF~~C~~L~~I~lp~--~v~~---Ig~~aF~~c-~l~~i~~~~--~l~~I~~~aF~~---------~~L~~i~lp~~~-- 124 (379)
T 4h09_A 64 NFNSCYNMTKVTVAS--TVTS---IGDGAFADT-KLQSYTGME--RVKKFGDYVFQG---------TDLDDFEFPGAT-- 124 (379)
T ss_dssp TTTTCTTCCEEEECT--TCCE---ECTTTTTTC-CCCEEEECT--TCCEECTTTTTT---------CCCSEEECCTTC--
T ss_pred HhhCCCCCCEEEeCC--cceE---echhhhcCC-CCceEECCc--eeeEeccceecc---------CCcccccCCCcc--
Confidence 355788999999964 4666 777778777 688777753 577766553311 578999887642
Q ss_pred cccCCCCCCCCccceeeccCCCCccccC--CCCCCCCccEEEecccC
Q 035732 140 VKLPQSSFSLSSLREIEIYNCSSLVSFP--EVALPSKLKKIRISYCG 184 (559)
Q Consensus 140 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~ 184 (559)
..+......-.+++.+.+... +..+. .+..+.+++.+.+....
T Consensus 125 ~~i~~~~F~~~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~~~ 169 (379)
T 4h09_A 125 TEIGNYIFYNSSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSSNN 169 (379)
T ss_dssp CEECTTTTTTCCCCEEEECTT--CCEECSCTTTTCTTCCEEEECTTC
T ss_pred ccccccccccceeeeeeccce--eeccccchhccccccccccccccc
Confidence 444443333346777666543 22332 35567777777776543
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.40 E-value=3.2e-05 Score=67.50 Aligned_cols=93 Identities=8% Similarity=0.049 Sum_probs=45.1
Q ss_pred hhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCc----ccCCCCCCCCccceeeccCCCCc
Q 035732 88 LLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLV----KLPQSSFSLSSLREIEIYNCSSL 163 (559)
Q Consensus 88 ~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~----~~~~~~~~l~~L~~L~l~~~~~~ 163 (559)
.+...+.|++|+|++|..+..-....+...+... ++|++|+|++|..-. .+...+...++|++|++++|...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~----~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTN----TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTC----CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhC----CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 3445666777777665344442222223333333 667777777665321 12223334456666666665322
Q ss_pred cc----c-CCCCCCCCccEEEe--cccC
Q 035732 164 VS----F-PEVALPSKLKKIRI--SYCG 184 (559)
Q Consensus 164 ~~----~-~~~~~~~~L~~L~l--~~~~ 184 (559)
.. + ..+...++|++|++ ++|.
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSC
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence 21 1 12334455666666 4444
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.23 E-value=0.00012 Score=63.78 Aligned_cols=117 Identities=21% Similarity=0.131 Sum_probs=75.8
Q ss_pred CCCCccEEEeccccCccEEe-ccCchhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCc-
Q 035732 63 RIPKLEELEIKNIKNETYIW-KSHDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLV- 140 (559)
Q Consensus 63 ~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~- 140 (559)
..+.|++|+++++..+...+ ......+...++|++|+|++| .+.+-....++..+... ++|++|+|++|..-.
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n----~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVN----NTLKSLNVESNFISGS 108 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHC----SSCCEEECCSSCCCHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhC----CCcCEEECcCCcCCHH
Confidence 57899999999874443300 011123455789999999997 56654443344555555 899999999997532
Q ss_pred ---ccCCCCCCCCccceeec--cCCCCccc----cC-CCCCCCCccEEEecccC
Q 035732 141 ---KLPQSSFSLSSLREIEI--YNCSSLVS----FP-EVALPSKLKKIRISYCG 184 (559)
Q Consensus 141 ---~~~~~~~~l~~L~~L~l--~~~~~~~~----~~-~~~~~~~L~~L~l~~~~ 184 (559)
.+...+...++|++|++ ++|..... +. .+...++|++|++++|.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 24556777889999999 76643221 11 13334667777776665
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.85 E-value=0.00064 Score=62.45 Aligned_cols=79 Identities=22% Similarity=0.258 Sum_probs=40.2
Q ss_pred CCccEEecccccccc--ccccccccCCCcceEEecC-CCCCCcCCCCCC--CCceeeecCccchhhhhh----hcccccc
Q 035732 363 AKLTRLEIYDCKRLE--ALPKGLHNLTSLQHLTIGG-ALPSLEEDGLPT--NLQLLNIEGNMEIWKSMI----ERGRGFH 433 (559)
Q Consensus 363 ~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~--~L~~L~l~~~~~l~~~~~----~~~~~~~ 433 (559)
++|+.|++++|.... .++..+..+++|+.|++++ .+..+.....+. +|++|++++|+ +...++ .....+.
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Np-l~~~~~~~~~y~~~il~ 248 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS-LCDTFRDQSTYISAIRE 248 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTST-TGGGCSSHHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCc-CccccCcchhHHHHHHH
Confidence 356666666654322 2334445666666666666 444443322222 77777777777 332111 0002345
Q ss_pred cCccccEEE
Q 035732 434 RFSSLRRLT 442 (559)
Q Consensus 434 ~l~~L~~L~ 442 (559)
.+|+|+.|+
T Consensus 249 ~~P~L~~LD 257 (267)
T 3rw6_A 249 RFPKLLRLD 257 (267)
T ss_dssp HCTTCCEES
T ss_pred HCcccCeEC
Confidence 566666654
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.62 E-value=0.0012 Score=60.72 Aligned_cols=61 Identities=15% Similarity=0.050 Sum_probs=38.6
Q ss_pred ccCceeEEecccCCCCc--ccCCCCCCCCccceeeccCCCCccccCCCCCCC--CccEEEecccCC
Q 035732 124 LSCRLEYLGLTSCHGLV--KLPQSSFSLSSLREIEIYNCSSLVSFPEVALPS--KLKKIRISYCGA 185 (559)
Q Consensus 124 ~~~~L~~L~l~~~~~l~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--~L~~L~l~~~~~ 185 (559)
.+++|+.|+|++|.... .+|..+..+++|+.|+|++|. +..+..+..+. +|++|++++|+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~l~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGGGGGGTTSCCSEEECTTSTT
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCchhhhhcccCCcceEEccCCcC
Confidence 34888888888886532 344555678888888888774 33333233333 677777777663
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.30 E-value=0.18 Score=40.42 Aligned_cols=33 Identities=27% Similarity=0.258 Sum_probs=17.5
Q ss_pred CcCeEEecCCCCCcccCCCCC--CCCceEEEecCCh
Q 035732 493 NLTLLQLWGCPKLKYFPKKGL--PSSLLELDIVGCP 526 (559)
Q Consensus 493 ~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~ 526 (559)
+|++|++++ |+++.++...+ .++|+.|++.+||
T Consensus 32 ~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 455555555 45555555332 3455555555554
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.42 E-value=0.29 Score=39.18 Aligned_cols=35 Identities=23% Similarity=0.120 Sum_probs=19.3
Q ss_pred CceeEEecccCCCCcccCC-CCCCCCccceeeccCCC
Q 035732 126 CRLEYLGLTSCHGLVKLPQ-SSFSLSSLREIEIYNCS 161 (559)
Q Consensus 126 ~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~ 161 (559)
++|++|+|++|.. ..+|. .|..+++|+.|+|.+|+
T Consensus 31 ~~l~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 31 VDTTELVLTGNNL-TALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TTCSEEECTTSCC-SSCCTTTGGGCTTCCEEECCSSC
T ss_pred cCCCEEECCCCcC-CccChhhhhhccccCEEEecCCC
Confidence 4566666666644 44433 34455666666666553
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=87.84 E-value=0.29 Score=42.22 Aligned_cols=68 Identities=15% Similarity=0.071 Sum_probs=33.3
Q ss_pred hccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCc----ccCCCCCCCCccceeeccCCC
Q 035732 90 QDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLV----KLPQSSFSLSSLREIEIYNCS 161 (559)
Q Consensus 90 ~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~----~~~~~~~~l~~L~~L~l~~~~ 161 (559)
..-+.|++|+|++++.+..-....+.+.+..- ..|+.|+|++|..-. .+...+..-+.|++|+|+.|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N----~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNS----KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTC----SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhC----CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 34566777777654344432222223333333 567777777765421 111222334456666666553
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=87.81 E-value=0.45 Score=41.05 Aligned_cols=93 Identities=17% Similarity=0.125 Sum_probs=60.1
Q ss_pred CCCCccEEEeccccCccEEe-ccCchhhhccCCCcEEEeccCCCccccccchHHHHHhhhhhccCceeEEecccCCCCc-
Q 035732 63 RIPKLEELEIKNIKNETYIW-KSHDELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLTSCHGLV- 140 (559)
Q Consensus 63 ~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~~~~~L~~L~l~~~~~l~- 140 (559)
.-+.|++|++.++..+...+ ......+..-..|++|+|++| .+.+-....+++.+..- ..|++|+|++|.+-.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N----~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETS----PSLRVLNVESNFLTPE 113 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHC----SSCCEEECCSSBCCHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcC----CccCeEecCCCcCCHH
Confidence 45789999998753332200 011123445689999999997 77776666666777666 899999999997532
Q ss_pred ---ccCCCCCCCCccceeeccCC
Q 035732 141 ---KLPQSSFSLSSLREIEIYNC 160 (559)
Q Consensus 141 ---~~~~~~~~l~~L~~L~l~~~ 160 (559)
.+...+..-+.|++|+++++
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHHhhCCceeEEECCCC
Confidence 22233444455777777643
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=31.30 E-value=63 Score=23.88 Aligned_cols=13 Identities=31% Similarity=0.215 Sum_probs=6.2
Q ss_pred ccCCCcCeEEecC
Q 035732 489 VDLQNLTLLQLWG 501 (559)
Q Consensus 489 ~~~~~L~~L~l~~ 501 (559)
.+|.+|+.+.+.+
T Consensus 40 ~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 40 SGCTALEKLILTG 52 (100)
T ss_dssp TTCTTCCCEEECC
T ss_pred hccCCccEEEEcC
Confidence 4444555555444
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=21.57 E-value=1e+02 Score=22.67 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=17.9
Q ss_pred CCCCCCccEEEeccccCccEEeccCchhhhccCCCcEEEecc
Q 035732 61 KPRIPKLEELEIKNIKNETYIWKSHDELLQDICSLKRLTIDS 102 (559)
Q Consensus 61 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 102 (559)
+.++.+|+++.+-. .++. +....|..|.+|+.+.+..
T Consensus 16 F~~c~~L~~i~iP~--~v~~---Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAGNTVIREITVQP--NIGL---LYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTCTTCCCEEECT--TSSC---CCTTSSTTCTTCCCEEECC
T ss_pred hcCCCCCcEEEcCC--chhe---EcHHHHhccCCccEEEEcC
Confidence 34455555555543 2333 4444555555555555543
Done!