BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035734
         (225 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QT3|A Chain A, Analysis Of A New Family Of Widely Distributed
           Metal-Independent Alpha-Mannosidases Provides Unique
           Insight Into The Processing Of N- Linked Glycans,
           Clostridium Perfringens Cpe0426 Apo-Structure
 pdb|3QT9|A Chain A, Analysis Of A New Family Of Widely Distributed
           Metal-Independent Alpha Mannosidases Provides Unique
           Insight Into The Processing Of N-Linked Glycans,
           Clostridium Perfringens Cpe0426 Complexed With
           Alpha-1,6- Linked 1-Thio-Alpha-Mannobiose
          Length = 427

 Score = 27.3 bits (59), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 127 VVVLRYVDKNGYVVERFIGIEHITSTTSISLKEALDRLFSKHGLSMSRLRGQGYDGASNM 186
           VV LRY+ +   + E+    E +      SL+E +D    KHG       G+ Y   ++ 
Sbjct: 236 VVALRYISE---IAEKVYKDEELKEKAD-SLREEIDNAIEKHGKVYKEGFGEVYAYETDG 291

Query: 187 QGEFN 191
            G +N
Sbjct: 292 MGNYN 296


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.138    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,218,372
Number of Sequences: 62578
Number of extensions: 234418
Number of successful extensions: 538
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 537
Number of HSP's gapped (non-prelim): 4
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)