BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035738
(333 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 346 bits (888), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 170/347 (48%), Positives = 227/347 (65%), Gaps = 23/347 (6%)
Query: 10 DQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMM 69
+++ +A QLA VLPM +++ EL + EII KAGPGA++S +IA+QL T N DAP+M
Sbjct: 17 EEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVM 76
Query: 70 LDRILRLLASYSVVECSLDAS---GARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVF 126
LDR+LRLLA Y ++ CS+ +RLY L +V+KY V N+DGVS+ + DKV
Sbjct: 77 LDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNEDGVSISALNLMNQDKVL 136
Query: 127 LECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYK 186
+E W LK A+L+GGIPFN+A+GM FEY G DP FNK FN M +++++ M ILE+Y
Sbjct: 137 MESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYT 196
Query: 187 GFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM----------- 235
GF+ +K LVDVGGG G + I +KYP IKGINFDLPHVIE P +P +
Sbjct: 197 GFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSI 256
Query: 236 ---------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDS 286
WI HDW+DEHCLK LKNCY+++P++GKVI E +LP P++S+ +K
Sbjct: 257 PKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHI 316
Query: 287 DVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK 333
DV+M+ +PGGKERT+ EF LA GAGF G N ++MEF K
Sbjct: 317 DVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIMEFLK 363
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 314 bits (804), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 165/348 (47%), Positives = 211/348 (60%), Gaps = 24/348 (6%)
Query: 10 DQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKA-GPGAKLSASDIAAQLTTKNKDAPM 68
+++ +A QLA VLPMA++A EL + EI+ K+ P +S ++IAAQL T N +AP+
Sbjct: 19 EEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPV 78
Query: 69 MLDRILRLLASYSVVECSLD---ASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKV 125
MLDR+LRLLASYSVV +L + RLY L V K+ N+DGVSL P + + DKV
Sbjct: 79 MLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKV 138
Query: 126 FLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESY 185
LE W LK AILEGGIPFN+A+GM+ F+Y G D NK FN M + +++ M ILE Y
Sbjct: 139 LLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMY 198
Query: 186 KGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM---------- 235
GF+ + +VDVGGG G I KYP I INFDLPHVI+ P +
Sbjct: 199 NGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFDG 258
Query: 236 ----------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSD 285
WI HDW+DEHCLKLLKNCY ++P+ GKVI E +LP P+ SI +K
Sbjct: 259 VPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIH 318
Query: 286 SDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK 333
+D LM+ +PGGKERT EF LA +GF G N +VMEF K
Sbjct: 319 TDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLK 366
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 303 bits (776), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 154/343 (44%), Positives = 208/343 (60%), Gaps = 25/343 (7%)
Query: 15 YANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQL-TTKNKDAPMMLDRI 73
+A QLA VLPM ++ ELG+ EI+ AG G L+ +++AA+L + N +AP M+DRI
Sbjct: 23 FALQLASSSVLPMTLKNAIELGLLEILVAAG-GKSLTPTEVAAKLPSAANPEAPDMVDRI 81
Query: 74 LRLLASYSVVECSLDASGARRL---YSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECW 130
LRLLASY+VV C ++ RL Y V K+ PN+DGVS+ + DKV +E W
Sbjct: 82 LRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESW 141
Query: 131 SQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKGFDN 190
LK A+L+GGIPFN+A+GM FEY G DP FN+ FN M N++ ++ +LE Y GF+
Sbjct: 142 YYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGFEG 201
Query: 191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM--------------- 235
+ LVDVGGG+G T+ AI YP IKG+NFDLPHVI P P +
Sbjct: 202 LGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFKEVPSGD 261
Query: 236 -----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLM 290
WILHDW+D+HC LLKNCY ++P GKV+ V+ +LP P + S+ D++M
Sbjct: 262 TILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIM 321
Query: 291 MIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK 333
+ +PGG+ER EF LA GAGF+G+ N W +EF K
Sbjct: 322 LAHNPGGRERYEREFQALARGAGFTGVKSTYIYANAWAIEFTK 364
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 242 bits (617), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 145/354 (40%), Positives = 201/354 (56%), Gaps = 31/354 (8%)
Query: 9 RDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGP-GAKLSASDIAAQL--TTKNKD 65
D + A L +V P + A +L +FEII KA P GA +S S+IA++L +T++ D
Sbjct: 21 EDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSD 80
Query: 66 APMMLDRILRLLASYSVVECS---LDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITH 122
P LDR+LRLLASYSV+ + ++ GA R+Y L+ V KY VP++ L
Sbjct: 81 LPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLC 140
Query: 123 DKVFLECWSQLKHAILEGGIP-FNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNI 181
L+ W K A+++ I F HG+ +E+ G D N+ FN M + + M +
Sbjct: 141 YPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRM 200
Query: 182 LESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM------ 235
LE Y GF+ I LVDVGGG G L+ I +KYP IKGINFDLP VIE+ PP +
Sbjct: 201 LEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGD 260
Query: 236 --------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESK 281
+ H+W+DE C++ L NC+K++ +GKVI VE +LPE PNTS ESK
Sbjct: 261 MFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESK 320
Query: 282 SNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSG--ISCERAIGNLWVMEFYK 333
S D LM I + GG+ERT ++ L+ +GFS ++C RA +L VMEFYK
Sbjct: 321 LVSTLDNLMFI-TVGGRERTEKQYEKLSKLSGFSKFQVAC-RAFNSLGVMEFYK 372
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 214 bits (544), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 141/354 (39%), Positives = 194/354 (54%), Gaps = 31/354 (8%)
Query: 9 RDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGP-GAKLSASDIAAQL--TTKNKD 65
D + A L +V P + A +L +FEII KA P GA S S+IA++L +T++ D
Sbjct: 21 EDSACLSAXVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFXSPSEIASKLPASTQHSD 80
Query: 66 APMMLDRILRLLASYSVVECS---LDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITH 122
P LDR LRLLASYSV+ + ++ GA R+Y L+ V KY VP++ L
Sbjct: 81 LPNRLDRXLRLLASYSVLTSTTRTIEDGGAERVYGLSXVGKYLVPDESRGYLASFTTFLC 140
Query: 123 DKVFLECWSQLKHAILEGGIP-FNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNI 181
L+ W K A+++ I F HG+ +E+ G D N+ FN + +
Sbjct: 141 YPALLQVWXNFKEAVVDEDIDLFKNVHGVTKYEFXGKDKKXNQIFNKSXVDVCATEXKRX 200
Query: 182 LESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM------ 235
LE Y GF+ I LVDVGGG G L+ I +KYP IKGINFDLP VIE+ PP +
Sbjct: 201 LEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGD 260
Query: 236 --------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESK 281
+ H+W+DE C++ L NC+K++ +GKVI VE +LPE PNTS ESK
Sbjct: 261 XFASVPQGDAXILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESK 320
Query: 282 SNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSG--ISCERAIGNLWVMEFYK 333
S D L I + GG+ERT ++ L+ +GFS ++C RA +L V EFYK
Sbjct: 321 LVSTLDNLXFI-TVGGRERTEKQYEKLSKLSGFSKFQVAC-RAFNSLGVXEFYK 372
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 147/330 (44%), Gaps = 33/330 (10%)
Query: 27 MAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86
M+++ E+ I II G +S S++ + L + + R++R LA E
Sbjct: 31 MSLKWAVEMNIPNIIQNHG--KPISLSNLVSILQVPSSKIGN-VRRLMRYLAHNGFFEI- 86
Query: 87 LDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAILEGGIP-FN 145
+ Y+L S+ V D + L P ++ D + +LK I E + F
Sbjct: 87 --ITKEEESYALTVASELLVRGSD-LCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFG 143
Query: 146 RAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTL 205
G +++ +P +N FN M + + L+ + + FD ++ +VDVGGG G T
Sbjct: 144 VTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTA 203
Query: 206 QAITTKYPYIKGINFDLPHVIEH-----------------VPPHPCM---WILHDWNDEH 245
+ I +P +K I FD P V+E+ +P + +ILH+W D+
Sbjct: 204 KIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKD 263
Query: 246 CLKLLKNCYKSIPED---GKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTR 302
CL++LK C +++ D GKV +++++ + + + ++ DV M + GKER
Sbjct: 264 CLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLN--GKERNE 321
Query: 303 HEFMTLATGAGFSGISCERAIGNLWVMEFY 332
E+ L AGF G L ++E Y
Sbjct: 322 EEWKKLFIEAGFQHYKISPLTGFLSLIEIY 351
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 84/350 (24%), Positives = 150/350 (42%), Gaps = 34/350 (9%)
Query: 9 RDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPM 68
+ Q+ Y N A V M+++ E+ I II G LS Q+ + D
Sbjct: 15 KAQALLYKNMYA--FVDSMSLKWSIEMNIPNIIHNHGKPITLSNLVSILQIPSTKVDN-- 70
Query: 69 MLDRILRLLASYSVVE--CSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVF 126
+ R++R LA E + + Y+L S+ V + + L P ++ D
Sbjct: 71 -VQRLMRYLAHNGFFEIITNQELENEEEAYALTVASELLVKGTE-LCLAPMVECVLDPTL 128
Query: 127 LECWSQLKHAILEGGIP-FNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESY 185
+ LK + E + F G +E+ +P +N +N + + + ++ + +
Sbjct: 129 STSFHNLKKWVYEEDLTLFAVNLGCDLWEFLNKNPEYNTLYNDALASDSKMINLAMKDCN 188
Query: 186 KGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEH----------------- 228
F+ ++ +VDVGGG G T + I +P + + FD P V+E+
Sbjct: 189 LVFEGLESIVDVGGGNGTTGKIICETFPKLTCVVFDRPKVVENLCGSNNLTYVGGDMFIS 248
Query: 229 VPPHPCMW---ILHDWNDEHCLKLLKNCYKSIPED---GKVIAVELMLPEVPNTSIESKS 282
VP + +LHDW D+ C+K+LK C +++ D GKVI +++++ E + + ++
Sbjct: 249 VPKADAVLLKAVLHDWTDKDCIKILKKCKEAVTSDGKRGKVIVIDMVINEKKDENQLTQI 308
Query: 283 NSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFY 332
+V I GKER E+ L AGF G + ++E Y
Sbjct: 309 KLLMNV--TISCVNGKERNEEEWKKLFIEAGFQDYKISPFTGLMSLIEIY 356
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 122/288 (42%), Gaps = 36/288 (12%)
Query: 72 RILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWS 131
R+ R LA E + Y+L S+ V D + L P ++ D +
Sbjct: 73 RLXRYLAHNGFFEI---ITKEEESYALTVASELLVRGSD-LCLAPXVECVLDPTLSGSYH 128
Query: 132 QLKHAILEGGIP-FNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKGFDN 190
+LK I E + F G +++ +P +N FN + + L+ + + FD
Sbjct: 129 ELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAXASDSKLINLALRDCDFVFDG 188
Query: 191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEH-----------------VPPHP 233
++ +VDVGGG G T + I +P +K I FD P V+E+ +P
Sbjct: 189 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDXFTSIPNAD 248
Query: 234 CM---WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLM 290
+ +ILH+W D+ CL++LK C +++ DGK V ++ + I+ K + + +
Sbjct: 249 AVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTII-----DXVIDKKKDENQVTQI 303
Query: 291 MIQSP------GGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFY 332
+ GKER E+ L AGF G L ++E Y
Sbjct: 304 KLLXDVNXACLNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIY 351
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 92/343 (26%), Positives = 151/343 (44%), Gaps = 37/343 (10%)
Query: 22 GIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLA--- 78
V MA+++ ELGI + I G ++ S++A+ L + +L R LRLL
Sbjct: 16 NFVSSMALKSAMELGIADAIH--NHGKPMTLSELASSLKL-HPSKVNILHRFLRLLTHNG 72
Query: 79 --SYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHA 136
+ ++V+ YSL SK + K L ++ L+ WS K
Sbjct: 73 FFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGK-PTCLSSIVKGALHPSSLDMWSSSKKW 131
Query: 137 ILEGG--IPFNRAHGMHTFEYAGLDPGFN--KHFNTVMYNYTSLVMSNILESYKGFDNIK 192
E F A G +++ D + F M + + + + E+ + F+ ++
Sbjct: 132 FNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLE 191
Query: 193 QLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVI-----------------EHVPPHPCM 235
LVDVGGG G + I +P++K FD P V+ + +P +
Sbjct: 192 SLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAV 251
Query: 236 ---WILHDWNDEHCLKLLKNCYKSIP---EDGKVIAVELMLPEVPNTSIESKSNSDSDVL 289
W+LHDWNDE LK+LKN ++I +DGKVI +++ + E + ++ D D++
Sbjct: 252 LLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLV 311
Query: 290 MMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFY 332
M+ GKERT+ E+ L AGFS G ++E Y
Sbjct: 312 MLTMFL-GKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVY 353
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 149/345 (43%), Gaps = 41/345 (11%)
Query: 22 GIVLPMAMQAVYELGIFEIIDKAGPGAKLS--ASDIAAQLTTKNKDAPMMLDRILRLLA- 78
V MA+++ ELGI + I G LS AS + + N +L R LRLL
Sbjct: 19 NFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVN-----ILHRFLRLLTH 73
Query: 79 ----SYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLK 134
+ ++V+ YSL SK + K L ++ L+ WS K
Sbjct: 74 NGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGK-PTCLSSIVKGALHPSSLDMWSSSK 132
Query: 135 HAILEGG--IPFNRAHGMHTFEYAGLDPGFN--KHFNTVMYNYTSLVMSNILESYKGFDN 190
E F A G +++ D + F M + + + + E+ + F+
Sbjct: 133 KWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEG 192
Query: 191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVI-----------------EHVPPHP 233
++ LVDVGGG G + I +P++K FD P V+ + +P
Sbjct: 193 LESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSAD 252
Query: 234 CM---WILHDWNDEHCLKLLKNCYKSIP---EDGKVIAVELMLPEVPNTSIESKSNSDSD 287
+ W+LHDWNDE LK+LKN ++I +DGKVI +++ + E + ++ D D
Sbjct: 253 AVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYD 312
Query: 288 VLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFY 332
++M+ GKERT+ E+ L AGFS G ++E Y
Sbjct: 313 LVMLTMFL-GKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVY 356
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 92/343 (26%), Positives = 151/343 (44%), Gaps = 37/343 (10%)
Query: 22 GIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLA--- 78
V MA+++ ELGI + I G ++ S++A+ L + +L R LRLL
Sbjct: 20 NFVSSMALKSAMELGIADAIH--NHGKPMTLSELASSLKL-HPSKVNILHRFLRLLTHNG 76
Query: 79 --SYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHA 136
+ ++V+ YSL SK + K L ++ L+ WS K
Sbjct: 77 FFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGK-PTCLSSIVKGALHPSSLDMWSSSKKW 135
Query: 137 ILEGG--IPFNRAHGMHTFEYAGLDPGFN--KHFNTVMYNYTSLVMSNILESYKGFDNIK 192
E F A G +++ D + F M + + + + E+ + F+ ++
Sbjct: 136 FNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLE 195
Query: 193 QLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVI-----------------EHVPPHPCM 235
LVDVGGG G + I +P++K FD P V+ + +P +
Sbjct: 196 SLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAV 255
Query: 236 ---WILHDWNDEHCLKLLKNCYKSIP---EDGKVIAVELMLPEVPNTSIESKSNSDSDVL 289
W+LHDWNDE LK+LKN ++I +DGKVI +++ + E + ++ D D++
Sbjct: 256 LLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLV 315
Query: 290 MMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFY 332
M+ GKERT+ E+ L AGFS G ++E Y
Sbjct: 316 MLTMFL-GKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVY 357
>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GXO|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
Length = 369
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/263 (20%), Positives = 104/263 (39%), Gaps = 51/263 (19%)
Query: 95 LYSLNSVSKYYVPNKDGVSLGPGIQITHDKVF------LECWSQLKHAILEGGIPFNRAH 148
L++ N++S +P+ P + D F W QL H++ G F+ A+
Sbjct: 109 LFAQNALSAVLLPD-------PASPVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVAN 161
Query: 149 GMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAI 208
G ++ DP + FN + + + +Y F VD+GGG G A+
Sbjct: 162 GTSFWQLTHEDPKARELFNRAXGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLXAAV 220
Query: 209 TTKYPYIKGINFDLPHVIEH------------------------VPPHPCMW----ILHD 240
+P ++G + P V E +P ++ +LHD
Sbjct: 221 LDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIKHVLHD 280
Query: 241 WNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKER 300
W+D+ +++L+ + D +++ ++ ++ E P S +++ GG ER
Sbjct: 281 WDDDDVVRILRRIATAXKPDSRLLVIDNLIDERPAASTLFVDL------LLLVLVGGAER 334
Query: 301 TRHEFMTLATGAGFSGISCERAI 323
+ EF L SG+ ER++
Sbjct: 335 SESEFAALLEK---SGLRVERSL 354
>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam
pdb|4A6E|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam And
N-Acetylserotonin
Length = 353
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 79/341 (23%), Positives = 134/341 (39%), Gaps = 56/341 (16%)
Query: 10 DQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMM 69
DQ++ N A G ++ + A ELG+F+++ +A PG L + +AA + ++
Sbjct: 6 DQAYRLLNDYANGFMVSQVLFAACELGVFDLLAEA-PGP-LDVAAVAAGVRASAHGTELL 63
Query: 70 LDRI--LRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVF- 126
LD L+LL ++ G + Y +S Y+ ++ P Q + K
Sbjct: 64 LDICVSLKLL--------KVETRGGKAFYRNTELSSDYL-----TTVSPTSQCSMLKYMG 110
Query: 127 ---LECWSQLKHAILEGGIPFNRAHGM---HTFEYAGLDPGFNKHFNTVMYNYTSLVMSN 180
CW L A+ EG + G+ F G F + S+ +
Sbjct: 111 RTSYRCWGHLADAVREGRNQYLETFGVPAEELFTAIYRSEGERLQFMQALQEVWSVNGRS 170
Query: 181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVI----EHVP------ 230
+L ++ + D+GGG G + + YP K FD+P V+ +H
Sbjct: 171 VLTAFD-LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQ 229
Query: 231 -------------PHPCMWI----LHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEV 273
P ++I LHDW D C LL+ Y + G ++ +E +L E
Sbjct: 230 IDFQEGDFFKDPLPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDED 289
Query: 274 PNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGF 314
+ ++ S L M+ G+ERT + L + AGF
Sbjct: 290 RRGPLLTQLYS----LNMLVQTEGQERTPTHYHMLLSSAGF 326
>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Methionine (Sam)
pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Homocystein (Sah)
Length = 374
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 72/341 (21%), Positives = 135/341 (39%), Gaps = 64/341 (18%)
Query: 23 IVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSV 82
+V PMA++ L + + + L+ +D A L + P L R++R L V
Sbjct: 27 LVTPMALRVAATLRLVDHL--------LAGADTLAGLADRTDTHPQALSRLVRHLTVVGV 78
Query: 83 VECSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHA------ 136
+E + P + G+ L G + +L+ + HA
Sbjct: 79 LEGG------------EKQGRPLRPTRLGMLLADG-HPAQQRAWLDLNGAVSHADLAFTG 125
Query: 137 ---ILEGGIP-FNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKGFDNIK 192
++ G P + +G +E D F+ +M L ++Y + ++
Sbjct: 126 LLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WSAVR 184
Query: 193 QLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHV---------------------PP 231
++DVGGG G L AI + P+++G +L E P
Sbjct: 185 HVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKP 244
Query: 232 HPCM-------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNS 284
P ++L +W+DE L +L+ C +++ G+++ ++ +V + ++
Sbjct: 245 LPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA--DVEGDGADRFFST 302
Query: 285 DSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGN 325
D L M+ GG+ RTR E + LA AG + ++ ER G+
Sbjct: 303 LLD-LRMLTFMGGRVRTRDEVVDLAGSAGLA-LASERTSGS 341
>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
pdb|3LST|B Chain B, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
Length = 348
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 33/170 (19%)
Query: 181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGI-----------NFDLPHV---- 225
IL F + DVGGG G L + ++P ++G+ D P V
Sbjct: 175 ILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRW 234
Query: 226 ----------IEHVPPHPCMWILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPN 275
+ H H ILH+W DE +++L NC + P G+V+ ++ ++PE N
Sbjct: 235 KVVEGDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVXPAHGRVLVIDAVVPE-GN 293
Query: 276 TSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGN 325
+ +SK + + G+ERT E L T A G+ +R +G
Sbjct: 294 DAHQSKEXD----FXXLAARTGQERTAAELEPLFTAA---GLRLDRVVGT 336
>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm
pdb|2IP2|B Chain B, Structure Of The Pyocyanin Biosynthetic Protein Phzm
Length = 334
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/277 (21%), Positives = 111/277 (40%), Gaps = 54/277 (19%)
Query: 72 RILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWS 131
R++RLL ++ + + G R N+ + + + + +G + + + + F W+
Sbjct: 60 RLMRLLVAFEIFQ------GDTRDGYANTPTSHLLRDVEGSF--RDMVLFYGEEFHAAWT 111
Query: 132 QLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNI--LESYKGFD 189
A+L G F A G + Y P + F M ++L I L ++G
Sbjct: 112 PACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASNLAFHEIPRLLDFRG-- 168
Query: 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLP------------------------HV 225
+ VDVGGG G +AI P +G+ D +
Sbjct: 169 --RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDM 226
Query: 226 IEHVPPHPCMWILH----DWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESK 281
++ VP + +++L D ++ L+LL NC +++ DG+V+ +E +I +
Sbjct: 227 LQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIE--------RTISAS 278
Query: 282 SNSDSDVLM---MIQSPGGKERTRHEFMTLATGAGFS 315
S VL + + G+ RT E + L GF+
Sbjct: 279 EPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFA 315
>pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDS|B Chain B, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDU|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With Sinefungin (Sfg)
Length = 374
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 67/331 (20%), Positives = 129/331 (38%), Gaps = 44/331 (13%)
Query: 23 IVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSV 82
+V P A++ L + + + L+ +D A L + P L R++R L V
Sbjct: 27 LVTPXALRVAATLRLVDHL--------LAGADTLAGLADRTDTHPQALSRLVRHLTVVGV 78
Query: 83 VECSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAILEGGI 142
+E R L + P + L ++H + ++ L + G
Sbjct: 79 LEGGEKQGRPLRPTRLGXLLADGHPAQQRAWLDLNGAVSHADL---AFTGLLDVVRTGRP 135
Query: 143 PFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIG 202
+ +G +E D F+ + L ++Y + ++ ++DVGGG G
Sbjct: 136 AYAGRYGRPFWEDLSADVALADSFDALXSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNG 194
Query: 203 VTLQAITTKYPYIKGINFDLPHVIEHV---------------------PPHPCM------ 235
L AI + P+++G +L E P P
Sbjct: 195 GXLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLL 254
Query: 236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQS 294
++L +W+DE L +L+ C +++ G+++ ++ +V + ++ D L +
Sbjct: 255 SFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA--DVEGDGADRFFSTLLD-LRXLTF 311
Query: 295 PGGKERTRHEFMTLATGAGFSGISCERAIGN 325
GG+ RTR E + LA AG + ++ ER G+
Sbjct: 312 XGGRVRTRDEVVDLAGSAGLA-LASERTSGS 341
>pdb|3I53|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I53|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I58|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I58|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I5U|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I5U|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I64|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
pdb|3I64|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
Length = 332
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 88/213 (41%), Gaps = 39/213 (18%)
Query: 132 QLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKGFDNI 191
+L H+I G + +G +E G DP + F+T+M ++ L + I Y + +
Sbjct: 112 ELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKYD-WAAL 170
Query: 192 KQLVDVGGGIGVTLQAITTKYPYIKGINFDL--PHVIEH-------------------VP 230
+VDVGGG G L A+ T + + G DL P H
Sbjct: 171 GHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFD 230
Query: 231 PHPC-------MWILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELML-PEVPNTSIESKS 282
P P +LHDW+D + +L+ C ++ G V+ +E + E T ++
Sbjct: 231 PLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMD--- 287
Query: 283 NSDSDVLMMIQSPGGKERTRHEFMTLATGAGFS 315
L M+ GGKER+ E LA AG +
Sbjct: 288 ------LRMLTYFGGKERSLAELGELAAQAGLA 314
>pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll
C Biosynthesis
pdb|1X1A|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Methionine
pdb|1X1B|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine
pdb|1X1C|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn2+
pdb|1X1D|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn-Bacteriopheophorbide D
Length = 359
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/194 (18%), Positives = 78/194 (40%), Gaps = 31/194 (15%)
Query: 163 NKHFNTVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL 222
N +F + + + +LE K D +K+++DVGGGIG A+ +P + +L
Sbjct: 164 NLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL 222
Query: 223 PHVIEHVPPHPC----------------------------MWILHDWNDEHCLKLLKNCY 254
P I+ V + IL+ N++ + K +
Sbjct: 223 PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAF 282
Query: 255 KSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGF 314
++ G+++ +++++ + N + + S+ M G KE+ R++ + G+
Sbjct: 283 DAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYK--EILESLGY 340
Query: 315 SGISCERAIGNLWV 328
++ R +L V
Sbjct: 341 KDVTMVRKYDHLLV 354
>pdb|2R3S|A Chain A, Crystal Structure Of A Putative O-methyltransferase
(npun_r0239) From Nostoc Punctiforme Pcc 73102 At 2.15 A
Resolution
pdb|2R3S|B Chain B, Crystal Structure Of A Putative O-methyltransferase
(npun_r0239) From Nostoc Punctiforme Pcc 73102 At 2.15 A
Resolution
Length = 335
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 55/115 (47%), Gaps = 12/115 (10%)
Query: 205 LQAITTKYPYIKGINFDLPHVIEH---VPPHPCMWILHDWNDEHCLKLLKNCYKSIPEDG 261
+Q + ++Y I G F++ + ++ + P+ LH ++ C +LL+ ++ +G
Sbjct: 210 IQGVASRYHTIAGSAFEVDYGNDYDLVLLPN----FLHHFDVATCEQLLRKIKTALAVEG 265
Query: 262 KVIAVELMLPEVPNTS-IESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFS 315
KVI + +PN+ I + ++ + +P G T E+ + + AGFS
Sbjct: 266 KVIVFDF----IPNSDRITPPDAAAFSLVXLATTPNGDAYTFAEYESXFSNAGFS 316
>pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW2|B Chain B, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW3|A Chain A, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
pdb|1TW3|B Chain B, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
Length = 360
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 72/335 (21%), Positives = 127/335 (37%), Gaps = 82/335 (24%)
Query: 26 PMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVEC 85
PM ++ L ++D GA+ + +AA+ T+ P L R++R L + ++E
Sbjct: 33 PMVVRTAATL---RLVDHILAGAR-TVKALAARTDTR----PEALLRLIRHLVAIGLLEE 84
Query: 86 SLDASGARRLYSLNSVSKYYVPNKDGVSLG---PGIQITHDKVFLECWSQLKHAILEGGI 142
DA G +VP + G L P Q W L A+ I
Sbjct: 85 --DAPGE------------FVPTEVGELLADDHPAAQ--------RAWHDLTQAVARADI 122
Query: 143 PFNR-----AHGMHTFE-------YAGL--DPGFNKHFNTVMYNYTSLVMSNILESYKGF 188
F R G T+E Y L P F++++ + +Y +
Sbjct: 123 SFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-W 181
Query: 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHV------------------- 229
N++ ++DVGGG G AI + P++ ++ ++
Sbjct: 182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGD 241
Query: 230 --PPHP-------CMWILHDWNDEHCLKLLKNCYKSIPEDGKVIAVEL-MLPEVPNTSIE 279
P P ++L +W D +++L C +++ G+++ E L E N+ E
Sbjct: 242 FFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHE--NSFNE 299
Query: 280 SKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGF 314
+ D +L+ + GG RTR ++ LA AG
Sbjct: 300 QFTELDLRMLVFL---GGALRTREKWDGLAASAGL 331
>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 333
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 25 LPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVE 84
L ++A+ LG+ E DK D+ +++ + +L ++RL + E
Sbjct: 60 LAAIVRAMDTLGV-EYGDKERKTDSKMVCDVVSRMEDTEPFSAELLSAMMRLWGDSGIQE 118
Query: 85 CSLDASGARRLYSLNSVSKYYVPNKDGVSLG 115
C R Y LN +KYY+ + D + G
Sbjct: 119 CF----NRSREYQLNDSAKYYLDSLDRIGAG 145
>pdb|3MCZ|A Chain A, The Structure Of An O-Methyltransferase Family Protein
From Burkholderia Thailandensis.
pdb|3MCZ|B Chain B, The Structure Of An O-Methyltransferase Family Protein
From Burkholderia Thailandensis
Length = 352
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLP 223
F + ++D+ GG G L + ++P + G +DLP
Sbjct: 177 FARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLP 212
>pdb|1M7X|A Chain A, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|B Chain B, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|C Chain C, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|D Chain D, The X-Ray Crystallographic Structure Of Branching Enzyme
Length = 617
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 149 GMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNIL 182
G + +E++ G+++ +NT++YNY +SN L
Sbjct: 242 GTNLYEHSDPREGYHQDWNTLIYNYGRREVSNFL 275
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,387,714
Number of Sequences: 62578
Number of extensions: 446791
Number of successful extensions: 933
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 861
Number of HSP's gapped (non-prelim): 48
length of query: 333
length of database: 14,973,337
effective HSP length: 99
effective length of query: 234
effective length of database: 8,778,115
effective search space: 2054078910
effective search space used: 2054078910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)