Query 035738
Match_columns 333
No_of_seqs 151 out of 1765
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 05:56:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035738.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035738hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3178 Hydroxyindole-O-methyl 100.0 9.4E-43 2E-47 307.9 25.7 316 10-333 4-342 (342)
2 TIGR02716 C20_methyl_CrtF C-20 100.0 4.1E-36 9E-41 273.2 21.1 267 25-320 3-305 (306)
3 PF00891 Methyltransf_2: O-met 100.0 5.4E-36 1.2E-40 263.5 14.6 217 92-310 2-241 (241)
4 COG2226 UbiE Methylase involve 99.6 1E-14 2.2E-19 125.7 12.1 135 188-327 49-230 (238)
5 PLN02233 ubiquinone biosynthes 99.6 7.7E-14 1.7E-18 123.9 14.3 135 188-327 71-254 (261)
6 TIGR00740 methyltransferase, p 99.5 1.7E-14 3.6E-19 126.8 6.9 133 189-326 52-232 (239)
7 KOG1540 Ubiquinone biosynthesi 99.5 1.2E-13 2.7E-18 117.1 11.7 149 163-318 73-278 (296)
8 PF01209 Ubie_methyltran: ubiE 99.5 2.9E-15 6.2E-20 130.3 1.3 140 188-332 45-232 (233)
9 PRK15451 tRNA cmo(5)U34 methyl 99.5 4.5E-14 9.7E-19 124.5 6.4 131 189-320 55-229 (247)
10 COG4106 Tam Trans-aconitate me 99.5 2.6E-13 5.7E-18 112.4 10.2 153 177-333 18-203 (257)
11 PRK14103 trans-aconitate 2-met 99.5 6.3E-13 1.4E-17 117.9 13.2 138 178-318 18-181 (255)
12 TIGR02752 MenG_heptapren 2-hep 99.5 4E-13 8.7E-18 117.3 11.7 147 181-333 37-231 (231)
13 PTZ00098 phosphoethanolamine N 99.5 1.1E-12 2.4E-17 116.6 13.6 135 179-323 42-204 (263)
14 PLN02490 MPBQ/MSBQ methyltrans 99.4 5.5E-12 1.2E-16 114.9 13.6 120 189-323 112-258 (340)
15 PRK00216 ubiE ubiquinone/menaq 99.4 1.2E-11 2.5E-16 108.4 14.9 148 180-333 42-238 (239)
16 PLN02244 tocopherol O-methyltr 99.4 6.1E-12 1.3E-16 115.9 13.1 131 189-323 117-280 (340)
17 COG2230 Cfa Cyclopropane fatty 99.4 3.8E-12 8.2E-17 111.8 10.5 138 178-324 61-226 (283)
18 PF02353 CMAS: Mycolic acid cy 99.4 8.3E-13 1.8E-17 117.4 5.7 143 178-325 51-221 (273)
19 PF06080 DUF938: Protein of un 99.3 1.2E-11 2.6E-16 103.5 11.5 138 193-333 28-204 (204)
20 PF13489 Methyltransf_23: Meth 99.3 2.2E-12 4.8E-17 105.8 6.8 121 188-318 20-160 (161)
21 PLN02336 phosphoethanolamine N 99.3 1.1E-11 2.4E-16 119.6 12.6 133 178-323 255-416 (475)
22 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 4.4E-11 9.6E-16 103.6 14.4 144 181-333 31-223 (223)
23 TIGR00452 methyltransferase, p 99.3 2.7E-11 5.9E-16 109.5 13.2 134 179-322 111-274 (314)
24 smart00828 PKS_MT Methyltransf 99.3 1.4E-11 3E-16 107.1 10.1 117 192-324 1-147 (224)
25 PRK15068 tRNA mo(5)U34 methylt 99.3 5.2E-11 1.1E-15 108.7 13.1 131 181-322 114-275 (322)
26 PRK04266 fibrillarin; Provisio 99.3 9.8E-11 2.1E-15 101.3 13.9 118 185-323 68-212 (226)
27 PRK06922 hypothetical protein; 99.3 2.6E-11 5.6E-16 117.3 10.5 122 150-272 377-542 (677)
28 PRK11036 putative S-adenosyl-L 99.3 3.6E-11 7.9E-16 106.6 10.5 136 180-325 36-211 (255)
29 PRK01683 trans-aconitate 2-met 99.3 9.3E-11 2E-15 104.2 13.1 135 178-319 20-184 (258)
30 PRK11207 tellurite resistance 99.2 9.1E-11 2E-15 99.8 11.8 120 179-319 20-168 (197)
31 PRK11873 arsM arsenite S-adeno 99.2 1E-10 2.2E-15 104.7 12.7 125 188-321 75-230 (272)
32 PRK08317 hypothetical protein; 99.2 1.1E-10 2.3E-15 102.2 12.6 137 181-322 11-177 (241)
33 PLN02396 hexaprenyldihydroxybe 99.2 1.6E-11 3.4E-16 111.6 6.3 124 190-322 131-290 (322)
34 TIGR03438 probable methyltrans 99.2 1.3E-10 2.7E-15 105.5 11.8 76 190-265 63-175 (301)
35 TIGR00477 tehB tellurite resis 99.2 1.7E-10 3.8E-15 98.0 11.3 120 180-320 21-168 (195)
36 PRK11705 cyclopropane fatty ac 99.2 2.3E-10 5.1E-15 106.8 11.5 135 180-325 158-316 (383)
37 PRK06202 hypothetical protein; 99.2 6.2E-10 1.3E-14 97.3 13.5 125 188-323 58-224 (232)
38 KOG2361 Predicted methyltransf 99.2 1.7E-10 3.7E-15 97.5 9.0 125 192-319 73-235 (264)
39 PRK05785 hypothetical protein; 99.1 2.9E-10 6.4E-15 98.7 10.6 135 190-333 51-224 (226)
40 PRK08287 cobalt-precorrin-6Y C 99.1 5.5E-10 1.2E-14 94.3 12.0 110 182-321 24-156 (187)
41 PF12847 Methyltransf_18: Meth 99.1 4.4E-11 9.6E-16 92.0 4.6 77 191-267 2-111 (112)
42 COG2227 UbiG 2-polyprenyl-3-me 99.1 2.7E-10 5.9E-15 96.8 7.2 123 190-322 59-216 (243)
43 PF08242 Methyltransf_12: Meth 99.1 6.5E-11 1.4E-15 89.1 2.1 67 195-263 1-99 (99)
44 PRK10258 biotin biosynthesis p 99.1 2.7E-09 5.9E-14 94.3 12.8 127 178-316 31-182 (251)
45 TIGR02021 BchM-ChlM magnesium 99.0 1.2E-09 2.5E-14 94.7 9.7 125 189-323 54-208 (219)
46 PRK12335 tellurite resistance 99.0 2.1E-09 4.5E-14 97.0 11.2 111 190-320 120-258 (287)
47 PLN02336 phosphoethanolamine N 99.0 1.7E-09 3.6E-14 104.6 11.3 123 179-318 27-179 (475)
48 PF13847 Methyltransf_31: Meth 99.0 8.2E-11 1.8E-15 95.9 1.8 118 190-313 3-152 (152)
49 TIGR02072 BioC biotin biosynth 99.0 3.2E-09 7E-14 92.8 12.0 117 190-321 34-176 (240)
50 PRK00517 prmA ribosomal protei 99.0 3.9E-09 8.5E-14 93.2 12.2 111 189-329 118-246 (250)
51 smart00138 MeTrc Methyltransfe 99.0 7.3E-09 1.6E-13 92.1 12.0 81 188-268 97-243 (264)
52 PF08003 Methyltransf_9: Prote 99.0 4.1E-09 8.8E-14 93.0 10.1 134 178-322 104-268 (315)
53 TIGR02469 CbiT precorrin-6Y C5 98.9 7E-09 1.5E-13 81.0 9.9 85 181-266 11-121 (124)
54 KOG1270 Methyltransferases [Co 98.9 2.1E-09 4.5E-14 92.2 7.0 122 191-322 90-250 (282)
55 TIGR00537 hemK_rel_arch HemK-r 98.9 1.7E-08 3.7E-13 84.6 12.4 113 190-333 19-177 (179)
56 PF08241 Methyltransf_11: Meth 98.9 6.1E-10 1.3E-14 82.6 2.9 68 195-265 1-95 (95)
57 PF08100 Dimerisation: Dimeris 98.9 1.4E-09 3E-14 70.2 3.7 51 27-78 1-51 (51)
58 PRK07580 Mg-protoporphyrin IX 98.9 1.1E-08 2.4E-13 89.1 10.2 123 188-323 61-216 (230)
59 PRK15001 SAM-dependent 23S rib 98.9 1.7E-08 3.8E-13 93.5 11.9 87 180-267 219-340 (378)
60 TIGR03587 Pse_Me-ase pseudamin 98.9 8.2E-09 1.8E-13 88.2 9.1 83 188-272 41-147 (204)
61 PF05891 Methyltransf_PK: AdoM 98.9 2.9E-09 6.2E-14 89.7 6.0 119 190-323 55-203 (218)
62 KOG4300 Predicted methyltransf 98.9 9.8E-09 2.1E-13 84.9 8.7 156 163-326 50-237 (252)
63 PTZ00146 fibrillarin; Provisio 98.9 9.4E-08 2E-12 84.9 15.3 116 188-323 130-273 (293)
64 TIGR00091 tRNA (guanine-N(7)-) 98.9 8.4E-09 1.8E-13 87.6 7.9 79 190-268 16-133 (194)
65 PRK05134 bifunctional 3-demeth 98.8 1.4E-08 2.9E-13 88.8 9.0 128 188-321 46-205 (233)
66 PF13649 Methyltransf_25: Meth 98.8 1.3E-09 2.8E-14 82.3 2.1 68 194-261 1-101 (101)
67 PRK00107 gidB 16S rRNA methylt 98.8 2.5E-08 5.3E-13 83.9 9.0 102 190-322 45-170 (187)
68 TIGR00138 gidB 16S rRNA methyl 98.8 7.8E-08 1.7E-12 80.6 11.1 76 191-267 43-142 (181)
69 PLN03075 nicotianamine synthas 98.8 2.1E-08 4.6E-13 89.3 8.0 79 189-267 122-233 (296)
70 COG2242 CobL Precorrin-6B meth 98.8 4.5E-08 9.8E-13 80.5 8.9 88 181-269 26-137 (187)
71 COG2813 RsmC 16S RNA G1207 met 98.8 2.8E-07 6E-12 81.6 14.3 89 179-268 148-267 (300)
72 PRK00121 trmB tRNA (guanine-N( 98.7 3.6E-08 7.9E-13 84.2 7.9 79 190-268 40-157 (202)
73 PLN02585 magnesium protoporphy 98.7 2.8E-08 6.1E-13 90.2 7.5 119 190-322 144-300 (315)
74 PRK07402 precorrin-6B methylas 98.7 4.6E-08 1E-12 83.2 8.5 86 181-268 32-143 (196)
75 TIGR03840 TMPT_Se_Te thiopurin 98.7 2E-07 4.4E-12 80.1 12.1 109 189-320 33-186 (213)
76 TIGR01983 UbiG ubiquinone bios 98.7 3.7E-08 8.1E-13 85.5 6.8 122 190-321 45-203 (224)
77 PRK14121 tRNA (guanine-N(7)-)- 98.7 8E-08 1.7E-12 88.8 9.2 88 180-268 113-236 (390)
78 PRK00377 cbiT cobalt-precorrin 98.7 2.8E-07 6.1E-12 78.5 11.3 82 183-265 34-143 (198)
79 COG4976 Predicted methyltransf 98.6 2.8E-07 6E-12 77.6 10.5 141 163-323 95-267 (287)
80 TIGR00406 prmA ribosomal prote 98.6 2.2E-07 4.8E-12 83.8 10.7 78 190-268 159-260 (288)
81 PRK09489 rsmC 16S ribosomal RN 98.6 1E-07 2.2E-12 87.7 8.6 87 181-268 188-304 (342)
82 PRK14968 putative methyltransf 98.6 7.9E-07 1.7E-11 74.8 13.2 114 189-333 22-188 (188)
83 PRK13255 thiopurine S-methyltr 98.6 4.5E-07 9.8E-12 78.2 11.3 111 188-321 35-190 (218)
84 TIGR03534 RF_mod_PrmC protein- 98.6 2.7E-07 5.9E-12 81.4 10.3 104 190-323 87-243 (251)
85 PF06325 PrmA: Ribosomal prote 98.6 1.9E-07 4E-12 83.8 9.1 130 166-329 140-291 (295)
86 PRK11088 rrmA 23S rRNA methylt 98.6 2.1E-07 4.6E-12 83.3 9.4 75 190-268 85-182 (272)
87 PF07021 MetW: Methionine bios 98.6 7.5E-07 1.6E-11 73.8 10.6 125 188-324 11-170 (193)
88 COG2264 PrmA Ribosomal protein 98.6 6.6E-07 1.4E-11 79.6 10.9 110 189-328 161-295 (300)
89 PF03848 TehB: Tellurite resis 98.5 1.3E-07 2.8E-12 79.2 5.7 120 179-319 20-167 (192)
90 KOG2899 Predicted methyltransf 98.5 3.3E-07 7.1E-12 77.8 7.7 88 180-268 47-209 (288)
91 PF05175 MTS: Methyltransferas 98.5 1.4E-07 3E-12 78.4 5.4 79 190-268 31-141 (170)
92 PF05401 NodS: Nodulation prot 98.5 7E-08 1.5E-12 80.1 3.5 115 184-322 38-180 (201)
93 PF12147 Methyltransf_20: Puta 98.5 1.5E-06 3.3E-11 76.2 11.5 136 188-333 133-311 (311)
94 PRK09328 N5-glutamine S-adenos 98.5 1.8E-06 3.8E-11 77.4 12.3 44 188-231 106-150 (275)
95 PF05148 Methyltransf_8: Hypot 98.5 1.2E-06 2.5E-11 73.4 9.6 139 164-333 46-197 (219)
96 PRK04457 spermidine synthase; 98.5 4.4E-07 9.5E-12 80.6 7.4 79 189-267 65-177 (262)
97 TIGR02081 metW methionine bios 98.5 8.7E-07 1.9E-11 75.2 8.9 126 190-322 13-168 (194)
98 KOG1271 Methyltransferases [Ge 98.4 8E-07 1.7E-11 72.2 7.6 103 191-323 68-207 (227)
99 COG4123 Predicted O-methyltran 98.4 2E-06 4.3E-11 74.6 10.3 45 188-232 42-87 (248)
100 PF04672 Methyltransf_19: S-ad 98.4 6.2E-07 1.3E-11 78.4 7.0 121 190-318 68-233 (267)
101 TIGR00080 pimt protein-L-isoas 98.4 1.1E-06 2.5E-11 75.8 8.2 84 179-266 67-176 (215)
102 KOG3010 Methyltransferase [Gen 98.4 8.2E-07 1.8E-11 75.5 6.5 73 191-268 34-138 (261)
103 PRK01581 speE spermidine synth 98.4 1.3E-06 2.7E-11 79.9 8.0 79 188-266 148-267 (374)
104 PRK11188 rrmJ 23S rRNA methylt 98.4 4.8E-06 1E-10 71.4 11.2 88 181-268 42-166 (209)
105 PRK13944 protein-L-isoaspartat 98.3 2.5E-06 5.5E-11 73.0 8.7 84 180-267 63-173 (205)
106 COG2519 GCD14 tRNA(1-methylade 98.3 3.9E-06 8.5E-11 72.3 9.4 99 170-271 71-199 (256)
107 PF02390 Methyltransf_4: Putat 98.3 8.7E-07 1.9E-11 75.1 5.4 76 193-268 20-134 (195)
108 PRK14966 unknown domain/N5-glu 98.3 1.3E-05 2.9E-10 74.7 12.8 43 190-232 251-294 (423)
109 PRK14967 putative methyltransf 98.3 9.6E-06 2.1E-10 70.4 11.2 82 188-270 34-162 (223)
110 TIGR03704 PrmC_rel_meth putati 98.3 1.4E-05 3E-10 70.6 12.2 43 190-232 86-129 (251)
111 PRK13942 protein-L-isoaspartat 98.3 4E-06 8.6E-11 72.2 8.5 85 179-267 66-176 (212)
112 PRK01544 bifunctional N5-gluta 98.3 5.4E-06 1.2E-10 80.4 10.0 42 190-231 138-180 (506)
113 TIGR03533 L3_gln_methyl protei 98.2 4E-06 8.8E-11 75.4 8.2 42 190-231 121-163 (284)
114 KOG3045 Predicted RNA methylas 98.2 1.4E-05 3.1E-10 68.6 10.7 152 153-333 139-303 (325)
115 PLN02232 ubiquinone biosynthes 98.2 1.1E-06 2.3E-11 72.2 3.9 88 236-326 52-152 (160)
116 PRK00811 spermidine synthase; 98.2 4.2E-06 9.1E-11 75.2 7.9 78 189-266 75-190 (283)
117 TIGR01177 conserved hypothetic 98.2 9.4E-06 2E-10 74.7 10.4 101 188-323 180-317 (329)
118 TIGR00438 rrmJ cell division p 98.2 2E-05 4.4E-10 66.4 11.2 87 181-267 23-146 (188)
119 PRK11805 N5-glutamine S-adenos 98.2 5.2E-06 1.1E-10 75.4 7.8 40 192-231 135-175 (307)
120 PRK03612 spermidine synthase; 98.2 1.1E-05 2.3E-10 78.8 10.2 78 189-267 296-415 (521)
121 PHA03411 putative methyltransf 98.1 1.6E-05 3.4E-10 70.2 9.7 41 191-231 65-106 (279)
122 TIGR00536 hemK_fam HemK family 98.1 9E-06 2E-10 73.2 8.4 40 192-231 116-156 (284)
123 PLN02366 spermidine synthase 98.1 8.9E-06 1.9E-10 73.7 8.1 80 188-267 89-206 (308)
124 PLN02781 Probable caffeoyl-CoA 98.1 2.5E-05 5.5E-10 68.2 10.0 81 188-268 66-179 (234)
125 PF13659 Methyltransf_26: Meth 98.1 5.7E-06 1.2E-10 63.9 5.4 76 192-268 2-116 (117)
126 COG0220 Predicted S-adenosylme 98.1 1.2E-05 2.6E-10 69.4 7.7 77 192-268 50-165 (227)
127 cd02440 AdoMet_MTases S-adenos 98.0 2.4E-05 5.3E-10 57.9 7.5 72 193-266 1-103 (107)
128 PRK00312 pcm protein-L-isoaspa 98.0 3.5E-05 7.7E-10 66.2 8.6 83 180-268 69-176 (212)
129 COG2890 HemK Methylase of poly 98.0 7.7E-05 1.7E-09 66.9 10.8 40 193-232 113-153 (280)
130 PF08704 GCD14: tRNA methyltra 98.0 2.4E-05 5.2E-10 68.4 7.1 112 179-322 30-172 (247)
131 PF05724 TPMT: Thiopurine S-me 97.9 2.1E-05 4.6E-10 67.8 6.2 111 188-321 35-190 (218)
132 TIGR00417 speE spermidine synt 97.9 2.9E-05 6.3E-10 69.4 7.2 78 189-266 71-185 (270)
133 PF05219 DREV: DREV methyltran 97.9 7.7E-05 1.7E-09 64.8 9.1 119 190-323 94-242 (265)
134 PRK10901 16S rRNA methyltransf 97.9 5.8E-05 1.3E-09 72.0 9.0 87 183-270 238-375 (427)
135 smart00650 rADc Ribosomal RNA 97.9 8.6E-05 1.9E-09 61.5 8.6 50 179-231 3-53 (169)
136 PRK13943 protein-L-isoaspartat 97.9 8.8E-05 1.9E-09 67.7 9.2 87 180-267 71-180 (322)
137 TIGR00563 rsmB ribosomal RNA s 97.8 4.7E-05 1E-09 72.6 7.7 90 181-271 230-372 (426)
138 PF03291 Pox_MCEL: mRNA cappin 97.8 2E-05 4.4E-10 72.1 4.7 132 190-322 62-268 (331)
139 PLN02476 O-methyltransferase 97.8 0.00041 8.9E-09 61.7 12.6 82 188-269 116-230 (278)
140 PLN02672 methionine S-methyltr 97.8 0.00012 2.6E-09 76.1 9.9 40 191-230 119-159 (1082)
141 PRK11727 23S rRNA mA1618 methy 97.8 0.00011 2.4E-09 66.8 8.2 42 190-231 114-156 (321)
142 PF01739 CheR: CheR methyltran 97.7 3.9E-05 8.5E-10 64.9 4.8 80 189-268 30-176 (196)
143 TIGR00478 tly hemolysin TlyA f 97.7 0.00049 1.1E-08 59.6 11.4 134 179-323 64-219 (228)
144 COG0421 SpeE Spermidine syntha 97.7 0.00013 2.8E-09 65.1 7.8 78 189-266 75-189 (282)
145 PRK10611 chemotaxis methyltran 97.7 0.00035 7.6E-09 62.6 10.3 79 190-268 115-263 (287)
146 PRK14902 16S rRNA methyltransf 97.7 0.00017 3.7E-09 69.2 8.8 44 188-231 248-293 (444)
147 PRK00536 speE spermidine synth 97.7 0.00012 2.7E-09 64.5 7.1 77 188-268 70-172 (262)
148 COG2518 Pcm Protein-L-isoaspar 97.7 9.4E-05 2E-09 62.4 5.9 87 179-268 62-170 (209)
149 COG1352 CheR Methylase of chem 97.7 0.00046 1E-08 61.1 10.4 79 190-268 96-242 (268)
150 PRK13256 thiopurine S-methyltr 97.7 0.0004 8.6E-09 60.0 9.7 81 188-270 41-166 (226)
151 PLN02823 spermine synthase 97.6 0.00017 3.7E-09 66.1 7.8 78 189-266 102-219 (336)
152 PRK01544 bifunctional N5-gluta 97.6 9.9E-05 2.1E-09 71.7 6.6 37 190-226 347-384 (506)
153 PRK13168 rumA 23S rRNA m(5)U19 97.6 0.00031 6.8E-09 67.3 10.0 52 178-232 286-338 (443)
154 COG4122 Predicted O-methyltran 97.6 0.00024 5.2E-09 60.8 8.1 84 188-271 57-170 (219)
155 PF01596 Methyltransf_3: O-met 97.6 7.3E-05 1.6E-09 63.8 4.9 83 188-270 43-158 (205)
156 TIGR03439 methyl_EasF probable 97.6 0.00025 5.4E-09 64.5 8.1 87 179-268 68-199 (319)
157 PRK14904 16S rRNA methyltransf 97.6 0.00028 6E-09 67.7 8.3 84 188-271 248-381 (445)
158 PF01135 PCMT: Protein-L-isoas 97.5 7.9E-05 1.7E-09 63.7 3.9 87 178-268 61-173 (209)
159 TIGR00446 nop2p NOL1/NOP2/sun 97.5 0.00037 8E-09 62.1 8.3 83 188-270 69-202 (264)
160 PRK00274 ksgA 16S ribosomal RN 97.5 0.00014 3.1E-09 65.0 5.3 50 179-231 32-82 (272)
161 PRK14903 16S rRNA methyltransf 97.5 0.00058 1.3E-08 65.1 9.1 83 188-270 235-369 (431)
162 KOG1541 Predicted protein carb 97.4 0.00023 5.1E-09 59.9 5.0 40 190-231 50-90 (270)
163 TIGR00755 ksgA dimethyladenosi 97.4 0.00092 2E-08 59.2 9.2 50 179-231 19-69 (253)
164 PRK14901 16S rRNA methyltransf 97.4 0.00046 1E-08 66.0 7.4 43 188-230 250-294 (434)
165 PF09339 HTH_IclR: IclR helix- 97.3 0.00012 2.7E-09 47.7 2.0 46 35-86 6-51 (52)
166 PF11968 DUF3321: Putative met 97.3 0.0036 7.8E-08 53.1 11.1 108 191-323 52-183 (219)
167 KOG1975 mRNA cap methyltransfe 97.3 0.00047 1E-08 61.4 5.7 80 188-268 115-238 (389)
168 COG3963 Phospholipid N-methylt 97.2 0.0032 6.9E-08 50.9 9.2 91 178-269 37-158 (194)
169 PRK10909 rsmD 16S rRNA m(2)G96 97.2 0.0024 5.3E-08 54.2 8.6 42 190-232 53-95 (199)
170 KOG3115 Methyltransferase-like 97.2 0.00037 8E-09 58.0 3.4 80 191-270 61-186 (249)
171 PLN02589 caffeoyl-CoA O-methyl 97.1 0.002 4.4E-08 56.5 7.8 82 188-270 77-192 (247)
172 PF01564 Spermine_synth: Sperm 97.1 0.00046 9.9E-09 60.7 3.7 80 189-268 75-192 (246)
173 PF09243 Rsm22: Mitochondrial 97.1 0.0026 5.6E-08 56.9 8.5 91 179-272 23-144 (274)
174 smart00550 Zalpha Z-DNA-bindin 97.1 0.0013 2.9E-08 45.5 4.9 60 32-100 6-66 (68)
175 PRK04148 hypothetical protein; 97.0 0.0068 1.5E-07 47.7 9.4 85 180-269 7-111 (134)
176 PRK14896 ksgA 16S ribosomal RN 97.0 0.0012 2.6E-08 58.6 5.6 50 179-231 19-69 (258)
177 PF10294 Methyltransf_16: Puta 97.0 0.0011 2.4E-08 55.1 4.8 81 188-270 43-159 (173)
178 PRK00050 16S rRNA m(4)C1402 me 96.9 0.0015 3.3E-08 58.7 5.6 54 178-232 8-63 (296)
179 KOG1331 Predicted methyltransf 96.9 0.0019 4.1E-08 56.8 5.9 79 188-270 43-146 (293)
180 COG2521 Predicted archaeal met 96.9 0.015 3.3E-07 49.7 10.9 115 188-325 132-281 (287)
181 PF08123 DOT1: Histone methyla 96.9 0.0038 8.2E-08 53.2 7.2 92 180-273 33-164 (205)
182 smart00346 HTH_ICLR helix_turn 96.9 0.0015 3.2E-08 47.9 4.2 58 34-101 7-64 (91)
183 PRK11783 rlmL 23S rRNA m(2)G24 96.9 0.0033 7.1E-08 63.8 7.9 42 190-232 538-580 (702)
184 PF01728 FtsJ: FtsJ-like methy 96.9 0.0048 1E-07 51.5 7.6 47 178-224 9-58 (181)
185 PRK03522 rumB 23S rRNA methylu 96.8 0.0037 8.1E-08 57.1 7.4 41 190-232 173-214 (315)
186 PRK15128 23S rRNA m(5)C1962 me 96.8 0.0042 9.1E-08 58.5 7.8 43 189-232 219-262 (396)
187 COG2263 Predicted RNA methylas 96.8 0.0012 2.5E-08 54.7 3.3 42 190-232 45-87 (198)
188 PF01022 HTH_5: Bacterial regu 96.7 0.0013 2.8E-08 41.9 2.6 44 34-85 4-47 (47)
189 TIGR00479 rumA 23S rRNA (uraci 96.7 0.0037 8E-08 59.8 6.8 49 181-232 284-333 (431)
190 PF03141 Methyltransf_29: Puta 96.7 0.0012 2.5E-08 62.5 3.0 82 189-271 116-223 (506)
191 KOG2940 Predicted methyltransf 96.6 0.0035 7.5E-08 53.3 5.2 120 190-319 72-225 (325)
192 PF04816 DUF633: Family of unk 96.6 0.01 2.2E-07 50.6 8.2 39 194-232 1-40 (205)
193 PF12840 HTH_20: Helix-turn-he 96.6 0.0025 5.3E-08 43.1 3.4 54 26-86 4-57 (61)
194 PTZ00338 dimethyladenosine tra 96.6 0.003 6.6E-08 57.0 5.0 49 179-230 26-75 (294)
195 KOG1661 Protein-L-isoaspartate 96.6 0.0029 6.3E-08 53.1 4.4 78 188-267 80-193 (237)
196 COG4798 Predicted methyltransf 96.6 0.025 5.4E-07 47.0 9.4 117 187-318 45-202 (238)
197 PF02082 Rrf2: Transcriptional 96.6 0.0044 9.6E-08 44.7 4.6 48 48-102 24-71 (83)
198 PHA03412 putative methyltransf 96.5 0.0024 5.1E-08 55.3 3.7 42 191-232 50-95 (241)
199 COG1414 IclR Transcriptional r 96.5 0.0029 6.3E-08 55.7 4.1 58 35-102 7-64 (246)
200 KOG2904 Predicted methyltransf 96.5 0.0037 7.9E-08 54.6 4.3 43 190-232 148-191 (328)
201 KOG2918 Carboxymethyl transfer 96.4 0.024 5.1E-07 50.6 8.9 123 188-322 85-278 (335)
202 PF13412 HTH_24: Winged helix- 96.3 0.0047 1E-07 39.4 3.4 45 33-84 4-48 (48)
203 TIGR01444 fkbM_fam methyltrans 96.3 0.004 8.6E-08 49.7 3.4 39 193-231 1-40 (143)
204 PF13679 Methyltransf_32: Meth 96.3 0.0061 1.3E-07 48.8 4.4 43 188-230 23-70 (141)
205 TIGR02085 meth_trns_rumB 23S r 96.3 0.0097 2.1E-07 55.8 6.3 41 190-232 233-274 (374)
206 PRK11569 transcriptional repre 96.1 0.0063 1.4E-07 54.5 4.2 58 35-102 31-88 (274)
207 TIGR02431 pcaR_pcaU beta-ketoa 96.1 0.0053 1.2E-07 54.1 3.7 56 35-102 12-67 (248)
208 PF01978 TrmB: Sugar-specific 96.1 0.0041 8.8E-08 43.0 2.3 47 33-86 9-55 (68)
209 PRK10163 DNA-binding transcrip 96.1 0.0065 1.4E-07 54.3 4.2 59 34-102 27-85 (271)
210 KOG3191 Predicted N6-DNA-methy 96.1 0.087 1.9E-06 43.4 10.0 39 191-229 44-84 (209)
211 PRK09834 DNA-binding transcrip 96.0 0.0084 1.8E-07 53.3 4.5 61 34-104 13-73 (263)
212 PRK15090 DNA-binding transcrip 96.0 0.0072 1.6E-07 53.6 4.0 57 35-102 17-73 (257)
213 PRK10141 DNA-binding transcrip 96.0 0.01 2.2E-07 45.7 4.2 67 25-100 9-75 (117)
214 PF02527 GidB: rRNA small subu 95.9 0.017 3.7E-07 48.4 5.6 76 193-268 51-149 (184)
215 PF04703 FaeA: FaeA-like prote 95.9 0.013 2.9E-07 39.5 4.0 46 36-87 4-49 (62)
216 COG1189 Predicted rRNA methyla 95.9 0.24 5.1E-06 42.8 12.3 134 180-323 69-226 (245)
217 COG4262 Predicted spermidine s 95.9 0.046 1E-06 49.8 8.2 42 189-231 288-331 (508)
218 PF05185 PRMT5: PRMT5 arginine 95.8 0.017 3.6E-07 55.3 5.7 106 152-264 152-294 (448)
219 smart00419 HTH_CRP helix_turn_ 95.8 0.013 2.8E-07 37.1 3.4 40 49-98 8-47 (48)
220 COG5459 Predicted rRNA methyla 95.8 0.0099 2.2E-07 53.7 3.7 83 190-272 113-230 (484)
221 COG0293 FtsJ 23S rRNA methylas 95.8 0.11 2.4E-06 43.9 9.8 87 177-270 32-121 (205)
222 KOG1709 Guanidinoacetate methy 95.8 0.081 1.7E-06 44.8 8.7 85 188-272 99-211 (271)
223 PHA00738 putative HTH transcri 95.7 0.015 3.2E-07 43.5 3.8 62 32-102 12-73 (108)
224 cd00092 HTH_CRP helix_turn_hel 95.7 0.028 6.1E-07 38.3 5.1 44 48-100 24-67 (67)
225 COG0275 Predicted S-adenosylme 95.6 0.088 1.9E-06 47.0 9.0 53 178-231 12-66 (314)
226 PF14947 HTH_45: Winged helix- 95.6 0.007 1.5E-07 43.0 1.8 49 48-106 18-66 (77)
227 COG1959 Predicted transcriptio 95.5 0.022 4.7E-07 46.1 4.6 55 41-102 17-71 (150)
228 TIGR00027 mthyl_TIGR00027 meth 95.5 0.093 2E-06 46.6 8.9 124 189-319 80-248 (260)
229 PRK10857 DNA-binding transcrip 95.5 0.026 5.7E-07 46.3 4.9 46 48-100 24-69 (164)
230 COG4301 Uncharacterized conser 95.4 0.051 1.1E-06 46.9 6.4 80 190-269 78-196 (321)
231 PF13463 HTH_27: Winged helix 95.4 0.019 4.1E-07 39.4 3.3 50 48-101 17-67 (68)
232 PF09012 FeoC: FeoC like trans 95.3 0.019 4.1E-07 39.8 3.2 43 37-86 5-47 (69)
233 PF13601 HTH_34: Winged helix 95.3 0.012 2.6E-07 42.1 2.1 64 33-103 1-66 (80)
234 PF04967 HTH_10: HTH DNA bindi 95.2 0.024 5.2E-07 36.9 3.2 43 25-77 5-47 (53)
235 COG3355 Predicted transcriptio 95.2 0.032 6.9E-07 43.2 4.3 47 34-87 29-76 (126)
236 KOG1499 Protein arginine N-met 95.2 0.019 4.1E-07 52.1 3.4 41 190-231 60-100 (346)
237 TIGR02010 IscR iron-sulfur clu 95.1 0.035 7.7E-07 44.0 4.5 46 48-100 24-69 (135)
238 TIGR00095 RNA methyltransferas 95.1 0.028 6E-07 47.4 4.0 42 190-232 49-91 (189)
239 KOG3420 Predicted RNA methylas 95.1 0.025 5.5E-07 44.7 3.4 41 190-232 48-90 (185)
240 KOG4589 Cell division protein 95.0 0.47 1E-05 39.4 10.6 80 181-268 60-144 (232)
241 COG1889 NOP1 Fibrillarin-like 95.0 1.1 2.4E-05 37.8 12.9 116 188-323 74-216 (231)
242 KOG1663 O-methyltransferase [S 95.0 0.15 3.3E-06 43.6 8.1 85 188-272 71-188 (237)
243 PF12802 MarR_2: MarR family; 94.9 0.028 6E-07 37.7 3.0 49 34-87 7-55 (62)
244 TIGR02143 trmA_only tRNA (urac 94.9 0.026 5.6E-07 52.5 3.7 39 192-232 199-238 (353)
245 TIGR02337 HpaR homoprotocatech 94.9 0.062 1.4E-06 41.4 5.2 69 32-107 28-97 (118)
246 TIGR00738 rrf2_super rrf2 fami 94.8 0.047 1E-06 43.0 4.6 47 48-101 24-70 (132)
247 TIGR02702 SufR_cyano iron-sulf 94.8 0.042 9.1E-07 46.8 4.5 66 35-107 4-72 (203)
248 PRK04338 N(2),N(2)-dimethylgua 94.7 0.093 2E-06 49.2 7.0 75 191-266 58-157 (382)
249 PRK11760 putative 23S rRNA C24 94.7 0.35 7.6E-06 44.3 10.2 78 188-268 209-305 (357)
250 PF07757 AdoMet_MTase: Predict 94.6 0.053 1.1E-06 40.7 4.0 43 177-222 46-88 (112)
251 KOG3987 Uncharacterized conser 94.6 0.03 6.4E-07 47.0 2.9 124 190-322 112-261 (288)
252 KOG0820 Ribosomal RNA adenine 94.6 0.091 2E-06 46.1 5.9 51 178-231 47-98 (315)
253 smart00347 HTH_MARR helix_turn 94.6 0.043 9.3E-07 40.5 3.5 47 33-86 11-57 (101)
254 PRK03902 manganese transport t 94.4 0.056 1.2E-06 43.2 4.2 49 48-105 21-69 (142)
255 PRK11933 yebU rRNA (cytosine-C 94.4 0.11 2.5E-06 49.9 6.9 42 188-229 111-154 (470)
256 PF08220 HTH_DeoR: DeoR-like h 94.4 0.073 1.6E-06 35.3 3.9 44 36-86 4-47 (57)
257 PRK05031 tRNA (uracil-5-)-meth 94.3 0.038 8.3E-07 51.5 3.4 39 192-232 208-247 (362)
258 PF07381 DUF1495: Winged helix 94.3 0.067 1.4E-06 38.9 3.9 69 31-106 8-87 (90)
259 COG3315 O-Methyltransferase in 94.2 0.12 2.6E-06 46.7 6.2 144 170-319 74-262 (297)
260 PF00398 RrnaAD: Ribosomal RNA 94.2 0.091 2E-06 46.7 5.4 51 178-231 19-70 (262)
261 PF01047 MarR: MarR family; I 94.2 0.048 1E-06 36.2 2.8 47 34-87 5-51 (59)
262 PF01269 Fibrillarin: Fibrilla 94.2 0.18 3.8E-06 43.2 6.7 116 188-323 71-214 (229)
263 smart00420 HTH_DEOR helix_turn 94.2 0.11 2.3E-06 33.3 4.4 43 37-86 5-47 (53)
264 PRK11050 manganese transport r 94.2 0.23 5.1E-06 40.2 7.3 79 10-105 20-98 (152)
265 COG0030 KsgA Dimethyladenosine 94.1 0.11 2.3E-06 45.8 5.5 49 178-229 19-68 (259)
266 PRK11512 DNA-binding transcrip 94.1 0.21 4.6E-06 39.9 6.8 45 36-87 44-88 (144)
267 PF01170 UPF0020: Putative RNA 94.0 0.2 4.3E-06 41.8 6.8 45 188-232 26-80 (179)
268 PRK11014 transcriptional repre 94.0 0.085 1.8E-06 42.1 4.4 60 27-99 9-68 (141)
269 KOG2915 tRNA(1-methyladenosine 93.8 0.51 1.1E-05 41.5 8.9 102 165-269 77-212 (314)
270 PF08461 HTH_12: Ribonuclease 93.7 0.096 2.1E-06 35.9 3.6 59 37-103 3-63 (66)
271 COG4742 Predicted transcriptio 93.7 0.082 1.8E-06 46.3 4.0 67 28-108 9-75 (260)
272 TIGR00122 birA_repr_reg BirA b 93.6 0.13 2.7E-06 35.5 4.1 54 34-100 2-55 (69)
273 PRK06266 transcription initiat 93.6 0.17 3.6E-06 42.2 5.5 45 35-86 25-69 (178)
274 COG2345 Predicted transcriptio 93.5 0.084 1.8E-06 45.1 3.7 63 36-105 15-80 (218)
275 PRK11920 rirA iron-responsive 93.4 0.11 2.4E-06 42.2 4.1 47 48-101 23-69 (153)
276 KOG1500 Protein arginine N-met 93.4 0.4 8.7E-06 43.4 7.8 41 190-231 177-217 (517)
277 PF01726 LexA_DNA_bind: LexA D 93.4 0.13 2.9E-06 35.1 3.8 36 48-86 24-59 (65)
278 COG2384 Predicted SAM-dependen 93.2 0.8 1.7E-05 39.1 9.0 42 190-231 16-58 (226)
279 TIGR02944 suf_reg_Xantho FeS a 93.2 0.12 2.5E-06 40.7 3.9 46 48-100 24-69 (130)
280 smart00418 HTH_ARSR helix_turn 93.2 0.17 3.6E-06 33.7 4.2 42 37-86 2-43 (66)
281 TIGR01884 cas_HTH CRISPR locus 93.2 0.14 3E-06 43.7 4.5 59 33-101 144-202 (203)
282 PRK06474 hypothetical protein; 93.1 0.16 3.4E-06 42.3 4.7 73 26-104 5-81 (178)
283 PF02475 Met_10: Met-10+ like- 93.1 0.093 2E-06 44.5 3.3 75 188-263 99-198 (200)
284 COG1321 TroR Mn-dependent tran 93.1 0.15 3.2E-06 41.4 4.3 50 48-106 23-72 (154)
285 TIGR00006 S-adenosyl-methyltra 93.0 0.2 4.3E-06 45.4 5.4 53 178-231 9-62 (305)
286 PF01638 HxlR: HxlR-like helix 92.9 0.077 1.7E-06 38.8 2.2 62 37-106 10-73 (90)
287 COG0357 GidB Predicted S-adeno 92.9 0.18 4E-06 43.1 4.8 32 191-222 68-99 (215)
288 smart00344 HTH_ASNC helix_turn 92.8 0.15 3.1E-06 38.6 3.8 46 33-85 4-49 (108)
289 PRK15431 ferrous iron transpor 92.7 0.2 4.4E-06 35.2 3.9 44 37-87 7-50 (78)
290 smart00345 HTH_GNTR helix_turn 92.6 0.21 4.6E-06 32.8 4.0 34 49-86 19-53 (60)
291 cd00090 HTH_ARSR Arsenical Res 92.6 0.19 4.2E-06 34.6 3.9 45 34-86 9-53 (78)
292 COG4189 Predicted transcriptio 92.6 0.21 4.6E-06 42.6 4.7 55 26-87 17-71 (308)
293 PF01325 Fe_dep_repress: Iron 92.3 0.22 4.8E-06 33.3 3.7 35 48-86 21-55 (60)
294 PF07942 N2227: N2227-like pro 92.2 5.2 0.00011 35.6 13.2 63 245-321 180-242 (270)
295 PF11312 DUF3115: Protein of u 92.2 1.2 2.5E-05 40.3 9.1 23 246-268 221-243 (315)
296 TIGR00373 conserved hypothetic 92.0 0.2 4.4E-06 40.8 3.9 45 35-86 17-61 (158)
297 COG0500 SmtA SAM-dependent met 91.9 0.92 2E-05 35.5 7.7 76 194-272 52-160 (257)
298 COG4190 Predicted transcriptio 91.8 0.28 6E-06 38.0 4.1 51 29-86 61-111 (144)
299 cd07377 WHTH_GntR Winged helix 91.7 0.4 8.8E-06 32.1 4.6 33 50-86 26-58 (66)
300 PF08279 HTH_11: HTH domain; 91.6 0.3 6.5E-06 31.8 3.7 40 36-81 4-43 (55)
301 PF01795 Methyltransf_5: MraW 91.5 0.27 5.9E-06 44.5 4.4 54 178-232 9-63 (310)
302 PF07091 FmrO: Ribosomal RNA m 91.4 0.59 1.3E-05 40.8 6.2 65 188-272 103-167 (251)
303 PRK03573 transcriptional regul 91.0 0.58 1.3E-05 37.3 5.6 45 37-87 36-80 (144)
304 PF13578 Methyltransf_24: Meth 90.8 0.23 5.1E-06 37.2 2.9 73 195-267 1-105 (106)
305 COG1041 Predicted DNA modifica 90.8 4.6 0.0001 37.1 11.5 79 188-268 195-311 (347)
306 cd07153 Fur_like Ferric uptake 90.6 0.42 9.1E-06 36.5 4.2 52 34-87 3-55 (116)
307 smart00529 HTH_DTXR Helix-turn 90.5 0.27 5.9E-06 36.1 3.0 46 52-106 2-47 (96)
308 TIGR01610 phage_O_Nterm phage 90.5 0.85 1.8E-05 33.7 5.5 44 48-99 46-89 (95)
309 PF00325 Crp: Bacterial regula 90.4 0.28 6.1E-06 28.2 2.2 31 49-83 2-32 (32)
310 PF03514 GRAS: GRAS domain fam 90.4 0.85 1.8E-05 42.8 6.8 44 179-223 100-150 (374)
311 TIGR00308 TRM1 tRNA(guanine-26 90.2 1.1 2.3E-05 42.0 7.3 76 191-268 45-148 (374)
312 COG1378 Predicted transcriptio 90.1 0.49 1.1E-05 41.6 4.7 59 32-100 16-74 (247)
313 KOG1269 SAM-dependent methyltr 90.1 0.37 8.1E-06 44.8 4.1 80 190-272 110-220 (364)
314 PF06163 DUF977: Bacterial pro 90.0 0.64 1.4E-05 35.8 4.6 53 27-86 7-59 (127)
315 KOG2798 Putative trehalase [Ca 89.8 5.4 0.00012 36.1 10.8 65 244-321 273-337 (369)
316 PF02384 N6_Mtase: N-6 DNA Met 89.4 0.47 1E-05 43.1 4.2 42 188-229 44-93 (311)
317 PF04989 CmcI: Cephalosporin h 89.4 0.75 1.6E-05 39.1 5.0 83 190-272 32-152 (206)
318 PF01234 NNMT_PNMT_TEMT: NNMT/ 88.9 0.4 8.7E-06 42.3 3.2 64 244-321 176-239 (256)
319 PRK14165 winged helix-turn-hel 88.7 0.44 9.6E-06 40.9 3.3 53 48-106 20-72 (217)
320 PF14394 DUF4423: Domain of un 88.5 1 2.2E-05 37.3 5.1 47 49-104 39-87 (171)
321 PHA02943 hypothetical protein; 88.4 0.72 1.6E-05 36.7 4.0 43 36-86 15-57 (165)
322 PRK11179 DNA-binding transcrip 88.4 0.64 1.4E-05 37.6 3.9 47 32-85 9-55 (153)
323 PF02002 TFIIE_alpha: TFIIE al 88.3 0.39 8.5E-06 36.1 2.5 43 37-86 18-60 (105)
324 TIGR01889 Staph_reg_Sar staphy 88.0 0.69 1.5E-05 35.0 3.6 51 32-87 25-77 (109)
325 TIGR02987 met_A_Alw26 type II 87.9 0.35 7.6E-06 47.5 2.4 40 190-229 31-79 (524)
326 COG2512 Predicted membrane-ass 87.7 0.62 1.4E-05 41.1 3.7 49 33-87 196-244 (258)
327 PRK11169 leucine-responsive tr 87.7 0.64 1.4E-05 38.1 3.5 47 32-85 14-60 (164)
328 PRK11783 rlmL 23S rRNA m(2)G24 87.0 2.8 6E-05 42.8 8.3 55 177-232 177-275 (702)
329 COG3432 Predicted transcriptio 86.9 0.25 5.4E-06 36.2 0.6 63 37-107 20-83 (95)
330 KOG2187 tRNA uracil-5-methyltr 86.7 0.9 2E-05 43.6 4.3 77 188-269 381-464 (534)
331 COG3413 Predicted DNA binding 86.6 0.68 1.5E-05 39.8 3.2 44 24-77 159-202 (215)
332 PHA01634 hypothetical protein 86.3 1.5 3.2E-05 34.1 4.5 39 190-229 28-67 (156)
333 PF01358 PARP_regulatory: Poly 86.3 2.2 4.8E-05 38.0 6.2 82 188-273 56-141 (294)
334 PF10007 DUF2250: Uncharacteri 86.2 1.2 2.5E-05 32.7 3.7 47 33-86 8-54 (92)
335 PRK04172 pheS phenylalanyl-tRN 86.0 0.56 1.2E-05 45.7 2.7 68 33-110 7-74 (489)
336 COG1522 Lrp Transcriptional re 85.9 1.1 2.4E-05 36.0 4.0 48 32-86 8-55 (154)
337 PRK10870 transcriptional repre 85.9 0.86 1.9E-05 37.8 3.4 47 36-87 59-105 (176)
338 PF04182 B-block_TFIIIC: B-blo 85.8 1.1 2.4E-05 31.4 3.4 49 33-86 3-51 (75)
339 KOG1562 Spermidine synthase [A 85.8 0.89 1.9E-05 40.6 3.5 82 188-270 119-239 (337)
340 PRK05638 threonine synthase; V 85.7 0.88 1.9E-05 43.7 3.8 63 34-105 373-437 (442)
341 PLN02853 Probable phenylalanyl 85.7 0.62 1.3E-05 44.8 2.7 71 31-111 2-73 (492)
342 PF09445 Methyltransf_15: RNA 85.6 0.63 1.4E-05 38.1 2.4 39 192-232 1-40 (163)
343 cd08283 FDH_like_1 Glutathione 85.5 5.4 0.00012 37.4 9.0 42 188-229 182-225 (386)
344 PF03602 Cons_hypoth95: Conser 85.2 0.86 1.9E-05 38.1 3.1 42 190-232 42-84 (183)
345 KOG4058 Uncharacterized conser 84.8 3.1 6.7E-05 33.3 5.7 91 180-272 63-177 (199)
346 PF00392 GntR: Bacterial regul 84.7 1.4 3E-05 29.7 3.4 35 48-86 22-57 (64)
347 PF13545 HTH_Crp_2: Crp-like h 84.5 1.2 2.6E-05 31.0 3.2 34 49-86 28-61 (76)
348 COG1733 Predicted transcriptio 84.4 2.1 4.6E-05 33.1 4.7 79 11-106 11-91 (120)
349 PF03444 HrcA_DNA-bdg: Winged 84.2 1.7 3.7E-05 30.6 3.7 48 48-102 22-69 (78)
350 PF03141 Methyltransf_29: Puta 84.0 4.2 9.2E-05 39.1 7.4 79 188-268 363-468 (506)
351 COG4565 CitB Response regulato 83.9 1.1 2.3E-05 38.1 3.0 44 37-86 163-206 (224)
352 KOG0024 Sorbitol dehydrogenase 83.9 4.6 0.0001 36.7 7.1 84 188-272 167-278 (354)
353 PRK04214 rbn ribonuclease BN/u 83.6 1.3 2.9E-05 42.1 3.9 43 48-99 309-351 (412)
354 PHA03108 poly(A) polymerase sm 83.5 6.1 0.00013 35.0 7.5 79 191-272 61-143 (300)
355 PRK13509 transcriptional repre 83.4 1.5 3.3E-05 38.6 4.0 45 35-86 8-52 (251)
356 PF06859 Bin3: Bicoid-interact 83.3 0.4 8.6E-06 36.2 0.2 75 240-323 17-94 (110)
357 PF12793 SgrR_N: Sugar transpo 83.0 1.6 3.4E-05 33.5 3.4 36 48-87 18-53 (115)
358 COG1846 MarR Transcriptional r 82.8 1.5 3.2E-05 33.3 3.3 51 30-87 20-70 (126)
359 TIGR00498 lexA SOS regulatory 82.7 1.6 3.4E-05 37.0 3.7 47 34-86 8-59 (199)
360 PF05958 tRNA_U5-meth_tr: tRNA 82.7 0.88 1.9E-05 42.3 2.3 52 177-232 185-237 (352)
361 PF03059 NAS: Nicotianamine sy 82.4 1.1 2.5E-05 39.9 2.8 77 190-266 120-229 (276)
362 PF13404 HTH_AsnC-type: AsnC-t 82.4 1.8 3.9E-05 26.6 2.9 37 33-76 4-40 (42)
363 COG1510 Predicted transcriptio 82.3 1.7 3.6E-05 35.5 3.4 36 48-87 40-75 (177)
364 PF13730 HTH_36: Helix-turn-he 82.3 1.3 2.9E-05 28.6 2.5 29 51-83 27-55 (55)
365 PRK13777 transcriptional regul 81.9 1.9 4.2E-05 36.0 3.8 45 36-87 49-93 (185)
366 PF08784 RPA_C: Replication pr 81.8 1.4 3E-05 32.9 2.7 51 32-86 47-98 (102)
367 COG0144 Sun tRNA and rRNA cyto 81.7 7.6 0.00016 36.1 8.1 83 188-270 154-291 (355)
368 COG2265 TrmA SAM-dependent met 81.3 3.7 7.9E-05 39.3 5.9 133 178-323 282-422 (432)
369 PF02636 Methyltransf_28: Puta 81.2 2.8 6E-05 36.9 4.9 36 190-225 18-62 (252)
370 PTZ00326 phenylalanyl-tRNA syn 80.9 1.4 3.1E-05 42.5 3.0 71 32-111 6-76 (494)
371 PF12324 HTH_15: Helix-turn-he 80.8 1.5 3.3E-05 30.7 2.4 35 37-78 29-63 (77)
372 PF13384 HTH_23: Homeodomain-l 80.1 1.5 3.2E-05 27.8 2.0 41 33-82 6-46 (50)
373 PF02319 E2F_TDP: E2F/DP famil 79.8 0.58 1.3E-05 32.5 0.0 37 48-86 23-62 (71)
374 PRK11886 bifunctional biotin-- 79.8 2.6 5.5E-05 38.6 4.3 56 35-102 7-63 (319)
375 PRK01747 mnmC bifunctional tRN 79.6 5.4 0.00012 40.5 7.0 33 190-222 57-101 (662)
376 PRK10906 DNA-binding transcrip 79.6 2.1 4.6E-05 37.7 3.6 46 34-86 7-52 (252)
377 PF05584 Sulfolobus_pRN: Sulfo 79.6 3.9 8.4E-05 28.3 4.0 43 36-86 9-51 (72)
378 PRK12423 LexA repressor; Provi 79.5 2.3 5E-05 36.1 3.6 35 49-86 25-59 (202)
379 PF07789 DUF1627: Protein of u 79.4 3.3 7.1E-05 32.9 4.1 46 48-99 5-50 (155)
380 PRK11534 DNA-binding transcrip 79.1 3 6.5E-05 35.9 4.3 38 46-87 27-64 (224)
381 PF05971 Methyltransf_10: Prot 79.0 2.3 4.9E-05 38.4 3.5 43 190-232 102-145 (299)
382 COG1802 GntR Transcriptional r 78.9 3.7 8.1E-05 35.5 4.9 48 46-102 36-83 (230)
383 COG1064 AdhP Zn-dependent alco 78.8 9.3 0.0002 35.2 7.5 78 188-270 164-262 (339)
384 COG1675 TFA1 Transcription ini 78.8 2.8 6E-05 34.7 3.7 45 35-86 21-65 (176)
385 PRK10434 srlR DNA-bindng trans 78.8 2.3 5E-05 37.6 3.5 46 34-86 7-52 (256)
386 COG2520 Predicted methyltransf 78.6 9.1 0.0002 35.3 7.3 81 190-272 188-294 (341)
387 PF08221 HTH_9: RNA polymerase 78.3 2.8 6E-05 28.2 3.0 44 36-86 17-60 (62)
388 COG1063 Tdh Threonine dehydrog 78.0 8.4 0.00018 35.7 7.2 78 192-272 170-274 (350)
389 PF02295 z-alpha: Adenosine de 77.6 3.1 6.7E-05 28.4 3.1 61 32-100 4-64 (66)
390 TIGR01321 TrpR trp operon repr 77.4 3.2 7E-05 30.4 3.3 41 30-78 40-80 (94)
391 PF11994 DUF3489: Protein of u 77.4 6.4 0.00014 27.3 4.6 55 37-98 15-71 (72)
392 PF05732 RepL: Firmicute plasm 77.3 2.5 5.5E-05 34.6 3.1 45 49-102 75-119 (165)
393 PF13518 HTH_28: Helix-turn-he 77.2 3.3 7.1E-05 26.2 3.1 29 50-82 13-41 (52)
394 COG1092 Predicted SAM-dependen 77.1 11 0.00023 35.6 7.5 42 190-232 217-259 (393)
395 KOG3201 Uncharacterized conser 76.8 1.7 3.7E-05 35.3 1.9 79 190-268 29-141 (201)
396 PRK09802 DNA-binding transcrip 76.7 3.2 6.9E-05 37.0 3.8 47 33-86 18-64 (269)
397 TIGR03433 padR_acidobact trans 76.6 5.2 0.00011 29.7 4.4 63 37-107 9-82 (100)
398 COG3897 Predicted methyltransf 76.5 9.9 0.00022 32.0 6.3 82 188-272 77-184 (218)
399 PF00165 HTH_AraC: Bacterial r 76.5 2.6 5.5E-05 25.6 2.3 28 48-79 7-34 (42)
400 PF04072 LCM: Leucine carboxyl 76.4 7.5 0.00016 32.3 5.8 77 190-269 78-166 (183)
401 TIGR03338 phnR_burk phosphonat 76.2 3.8 8.2E-05 34.8 4.1 36 47-86 32-67 (212)
402 TIGR02787 codY_Gpos GTP-sensin 75.9 3.9 8.4E-05 35.5 3.9 45 36-86 187-231 (251)
403 PRK10411 DNA-binding transcrip 75.8 4.3 9.2E-05 35.5 4.3 45 35-86 7-51 (240)
404 PF05206 TRM13: Methyltransfer 75.3 7.3 0.00016 34.5 5.7 37 188-224 16-57 (259)
405 PF10354 DUF2431: Domain of un 75.3 35 0.00076 27.9 9.3 50 247-323 105-154 (166)
406 PLN02668 indole-3-acetate carb 75.3 9 0.0002 36.0 6.5 24 249-272 219-242 (386)
407 COG1497 Predicted transcriptio 75.2 2.5 5.5E-05 36.4 2.6 85 48-142 24-110 (260)
408 PF03428 RP-C: Replication pro 74.9 4 8.7E-05 33.8 3.7 33 50-86 71-104 (177)
409 PF01475 FUR: Ferric uptake re 74.8 3.4 7.4E-05 31.7 3.1 67 31-100 7-74 (120)
410 PRK09954 putative kinase; Prov 73.9 3.6 7.8E-05 38.3 3.6 44 34-84 5-48 (362)
411 PRK11161 fumarate/nitrate redu 73.8 13 0.00028 32.0 6.9 34 49-86 184-217 (235)
412 PRK11414 colanic acid/biofilm 73.6 5.8 0.00012 34.0 4.6 37 46-86 31-67 (221)
413 COG2524 Predicted transcriptio 73.3 5.4 0.00012 34.9 4.1 48 48-102 24-71 (294)
414 PF02796 HTH_7: Helix-turn-hel 73.1 2.6 5.7E-05 26.2 1.7 23 49-75 21-43 (45)
415 KOG1209 1-Acyl dihydroxyaceton 72.2 33 0.00072 29.5 8.4 78 189-269 5-88 (289)
416 smart00531 TFIIE Transcription 72.0 4.3 9.3E-05 32.6 3.2 41 36-83 5-45 (147)
417 PRK09334 30S ribosomal protein 71.8 4.8 0.0001 29.0 3.0 35 48-86 40-74 (86)
418 KOG1098 Putative SAM-dependent 71.6 14 0.00031 36.6 6.9 83 180-269 34-119 (780)
419 PF09904 HTH_43: Winged helix- 71.6 4.8 0.0001 29.1 2.9 47 49-99 21-69 (90)
420 PF07109 Mg-por_mtran_C: Magne 71.5 22 0.00047 26.3 6.4 83 237-333 4-97 (97)
421 PRK00215 LexA repressor; Valid 71.5 6.7 0.00015 33.2 4.5 36 48-86 22-57 (205)
422 COG3510 CmcI Cephalosporin hyd 71.2 31 0.00068 29.0 7.9 86 190-275 69-188 (237)
423 PRK01381 Trp operon repressor; 70.9 5.9 0.00013 29.3 3.3 41 30-78 40-80 (99)
424 COG1349 GlpR Transcriptional r 70.4 5.5 0.00012 35.1 3.8 45 35-86 8-52 (253)
425 PRK11639 zinc uptake transcrip 69.6 7.5 0.00016 32.0 4.2 54 31-86 25-79 (169)
426 PF00126 HTH_1: Bacterial regu 69.5 5.2 0.00011 26.5 2.7 54 34-102 3-59 (60)
427 cd08237 ribitol-5-phosphate_DH 69.4 27 0.00059 32.0 8.4 81 188-268 161-257 (341)
428 KOG2352 Predicted spermine/spe 69.2 6.2 0.00013 37.8 4.0 83 189-271 294-420 (482)
429 COG0735 Fur Fe2+/Zn2+ uptake r 68.5 7.4 0.00016 31.1 3.8 55 31-87 20-75 (145)
430 PF08222 HTH_CodY: CodY helix- 68.4 4 8.6E-05 26.8 1.7 35 48-86 3-37 (61)
431 PF13814 Replic_Relax: Replica 68.3 7.2 0.00016 32.4 3.9 61 40-107 3-71 (191)
432 PRK09990 DNA-binding transcrip 67.8 7.3 0.00016 34.1 4.0 38 46-87 27-65 (251)
433 PRK09775 putative DNA-binding 67.7 6.8 0.00015 37.6 4.0 53 37-101 5-57 (442)
434 PHA02591 hypothetical protein; 67.6 6.7 0.00015 27.5 2.8 31 37-75 51-81 (83)
435 KOG2651 rRNA adenine N-6-methy 67.1 9 0.00019 35.6 4.4 44 180-224 143-186 (476)
436 TIGR02698 CopY_TcrY copper tra 67.0 9.7 0.00021 29.8 4.1 47 33-86 5-55 (130)
437 TIGR00635 ruvB Holliday juncti 66.6 6.4 0.00014 35.5 3.5 35 48-86 254-289 (305)
438 PRK04424 fatty acid biosynthes 66.3 3.9 8.4E-05 34.2 1.8 46 34-86 9-54 (185)
439 PF03297 Ribosomal_S25: S25 ri 66.1 7.7 0.00017 29.2 3.2 47 37-87 46-93 (105)
440 COG4627 Uncharacterized protei 65.8 3.7 8E-05 33.2 1.5 33 236-268 55-87 (185)
441 PF12692 Methyltransf_17: S-ad 65.7 38 0.00083 27.2 7.1 41 180-222 20-60 (160)
442 COG1565 Uncharacterized conser 65.6 24 0.00052 32.7 6.9 62 159-225 51-121 (370)
443 PRK10046 dpiA two-component re 65.5 8.5 0.00018 32.9 3.9 45 36-86 166-210 (225)
444 PF05331 DUF742: Protein of un 65.4 8.9 0.00019 29.3 3.5 34 49-86 55-88 (114)
445 PRK11753 DNA-binding transcrip 65.3 7 0.00015 32.9 3.3 34 49-86 168-201 (211)
446 TIGR02812 fadR_gamma fatty aci 65.3 9 0.00019 33.2 4.0 36 47-86 27-63 (235)
447 COG0116 Predicted N6-adenine-s 65.2 33 0.00072 32.1 7.8 54 178-232 180-273 (381)
448 TIGR02147 Fsuc_second hypothet 65.2 9.7 0.00021 34.0 4.2 45 49-102 137-183 (271)
449 PRK10225 DNA-binding transcrip 65.0 8.6 0.00019 33.8 3.9 36 47-86 30-66 (257)
450 PRK13239 alkylmercury lyase; P 64.2 6.6 0.00014 33.4 2.8 39 33-78 23-61 (206)
451 PF05430 Methyltransf_30: S-ad 64.0 10 0.00023 29.4 3.7 51 248-331 71-121 (124)
452 TIGR03879 near_KaiC_dom probab 64.0 5.1 0.00011 28.0 1.7 33 49-85 32-64 (73)
453 PF10672 Methyltrans_SAM: S-ad 63.4 29 0.00063 31.2 7.0 42 190-232 123-165 (286)
454 PRK09462 fur ferric uptake reg 63.0 12 0.00027 29.8 4.2 56 31-87 16-72 (148)
455 COG4076 Predicted RNA methylas 62.7 10 0.00022 31.8 3.5 76 192-269 34-137 (252)
456 TIGR03697 NtcA_cyano global ni 62.7 8.3 0.00018 31.9 3.3 34 49-86 143-176 (193)
457 PRK09464 pdhR transcriptional 62.5 10 0.00022 33.2 3.9 37 47-87 31-68 (254)
458 KOG2793 Putative N2,N2-dimethy 62.2 9.7 0.00021 33.4 3.6 40 190-230 86-125 (248)
459 PF01189 Nol1_Nop2_Fmu: NOL1/N 62.0 7.2 0.00016 35.0 2.9 43 188-230 83-127 (283)
460 PHA02701 ORF020 dsRNA-binding 61.9 12 0.00026 31.1 3.8 61 33-102 5-65 (183)
461 PF09681 Phage_rep_org_N: N-te 61.4 12 0.00027 28.9 3.7 44 48-100 52-95 (121)
462 TIGR03826 YvyF flagellar opero 61.0 9.4 0.0002 30.2 3.0 35 36-75 34-68 (137)
463 COG1339 Transcriptional regula 60.9 14 0.0003 31.0 4.0 34 49-86 19-52 (214)
464 PF11599 AviRa: RRNA methyltra 60.9 25 0.00053 30.2 5.6 44 189-232 50-96 (246)
465 PRK15418 transcriptional regul 60.8 15 0.00032 33.7 4.7 34 49-86 29-62 (318)
466 COG0640 ArsR Predicted transcr 60.5 16 0.00034 26.2 4.2 52 28-86 21-72 (110)
467 KOG0822 Protein kinase inhibit 60.4 45 0.00099 32.6 7.8 72 152-230 334-412 (649)
468 PF14338 Mrr_N: Mrr N-terminal 60.3 19 0.00041 26.2 4.4 34 70-108 57-90 (92)
469 TIGR01202 bchC 2-desacetyl-2-h 60.2 39 0.00084 30.5 7.4 76 190-268 144-232 (308)
470 PRK09333 30S ribosomal protein 59.4 19 0.00041 28.9 4.5 62 37-107 58-129 (150)
471 PRK10421 DNA-binding transcrip 58.9 13 0.00028 32.6 3.9 36 47-86 23-59 (253)
472 PRK11523 DNA-binding transcrip 58.9 13 0.00029 32.5 4.0 37 47-87 29-66 (253)
473 KOG1596 Fibrillarin and relate 58.9 37 0.00079 29.7 6.3 81 188-268 154-262 (317)
474 PF10668 Phage_terminase: Phag 58.7 11 0.00024 25.1 2.6 23 48-74 21-43 (60)
475 PF06969 HemN_C: HemN C-termin 58.3 13 0.00029 24.8 3.1 45 49-103 20-65 (66)
476 PF09929 DUF2161: Uncharacteri 57.8 18 0.00038 27.7 3.8 50 39-103 66-115 (118)
477 KOG1269 SAM-dependent methyltr 57.0 37 0.00081 31.7 6.7 40 190-229 180-220 (364)
478 cd05188 MDR Medium chain reduc 57.0 96 0.0021 26.6 9.2 78 188-269 132-234 (271)
479 PRK10736 hypothetical protein; 57.0 13 0.00028 34.8 3.7 44 35-86 311-354 (374)
480 TIGR00689 rpiB_lacA_lacB sugar 56.5 30 0.00064 27.7 5.2 60 194-253 58-121 (144)
481 PF00107 ADH_zinc_N: Zinc-bind 56.4 13 0.00027 28.5 3.1 67 200-270 1-92 (130)
482 PRK10402 DNA-binding transcrip 56.3 12 0.00025 32.2 3.1 34 49-86 169-202 (226)
483 PRK04984 fatty acid metabolism 56.1 16 0.00034 31.7 4.0 36 48-87 29-65 (239)
484 PF13309 HTH_22: HTH domain 55.9 9.8 0.00021 25.7 2.0 37 27-75 28-64 (64)
485 COG2390 DeoR Transcriptional r 55.9 11 0.00025 34.4 3.1 34 49-86 26-59 (321)
486 COG4883 Uncharacterized protei 55.8 69 0.0015 28.9 7.7 86 126-211 68-161 (500)
487 PF05344 DUF746: Domain of Unk 55.5 13 0.00029 25.1 2.6 33 38-79 7-39 (65)
488 KOG2730 Methylase [General fun 55.5 9.8 0.00021 32.7 2.4 42 190-233 94-136 (263)
489 PF09821 AAA_assoc_C: C-termin 55.2 9 0.0002 29.6 2.0 46 54-109 2-47 (120)
490 PRK09391 fixK transcriptional 55.2 17 0.00037 31.3 4.0 34 49-86 179-212 (230)
491 TIGR01120 rpiB ribose 5-phosph 55.0 31 0.00066 27.6 5.0 60 194-253 59-122 (143)
492 PRK13918 CRP/FNR family transc 55.0 13 0.00028 31.0 3.2 34 49-86 149-182 (202)
493 PF08280 HTH_Mga: M protein tr 54.6 12 0.00026 24.7 2.3 38 34-78 7-44 (59)
494 TIGR00637 ModE_repress ModE mo 54.2 18 0.00038 26.9 3.4 64 33-106 5-71 (99)
495 PRK00135 scpB segregation and 54.1 20 0.00043 30.1 4.0 42 35-86 93-134 (188)
496 PRK03837 transcriptional regul 53.9 19 0.00042 31.1 4.2 37 47-87 34-71 (241)
497 PRK09273 hypothetical protein; 53.9 31 0.00068 29.4 5.1 41 192-232 64-104 (211)
498 PRK11642 exoribonuclease R; Pr 53.8 17 0.00036 37.9 4.2 49 36-86 23-71 (813)
499 PRK13558 bacterio-opsin activa 53.0 12 0.00027 37.8 3.2 44 24-77 611-654 (665)
500 COG4901 Ribosomal protein S25 53.0 15 0.00032 27.3 2.6 49 34-86 43-92 (107)
No 1
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=100.00 E-value=9.4e-43 Score=307.86 Aligned_cols=316 Identities=47% Similarity=0.791 Sum_probs=280.4
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCC-CCCCCcccHHHHHHHHhcccceeeecc
Q 035738 10 DQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTT-KNKDAPMMLDRILRLLASYSVVECSLD 88 (333)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~-~~~~~~~~l~~lL~~L~~~g~l~~~~~ 88 (333)
.+...++++++.++..++++.+|+|||+||.|++++ + ..|+|..+-. +||..|..++|+||.|++.+++++...
T Consensus 4 ~~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~~---~--p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~ 78 (342)
T KOG3178|consen 4 NEASLRAMRLANGFALPMVLKAACELGVFDILANAG---S--PSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLV 78 (342)
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhCC---C--HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeee
Confidence 345678999999999999999999999999999963 2 8888888884 677899999999999999999999743
Q ss_pred CCCccccccccccccccccCCCCCChhhhHhhccChhhHHhhhhhHHHHhcCCChhhhhcCCChhhhhcCCchhHHHHHH
Q 035738 89 ASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNT 168 (333)
Q Consensus 89 ~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~ 168 (333)
++ . .|++++.++.++.+.+..+++.++...+....++.|..|.++++.+..+|..++|...++|...++.....|++
T Consensus 79 ~~--~-~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~ 155 (342)
T KOG3178|consen 79 GG--E-VYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNG 155 (342)
T ss_pred cc--e-eeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHH
Confidence 21 2 79999999988866656789999998888889999999999999999899999997789999888888889999
Q ss_pred HHhhhhhhhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC-CCe------------
Q 035738 169 VMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH-PCM------------ 235 (333)
Q Consensus 169 ~m~~~~~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-~gv------------ 235 (333)
+|...+....+.+++.+.+++.....||||||.|..+..++..||+++++.+|+|.+++.+..+ +||
T Consensus 156 sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P 235 (342)
T KOG3178|consen 156 SMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTP 235 (342)
T ss_pred HHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccCC
Confidence 9999999988899998888999999999999999999999999999999999999999999887 764
Q ss_pred --------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCC-CCccccccccchhhHHHhhCCCCCcCCHHHHH
Q 035738 236 --------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVP-NTSIESKSNSDSDVLMMIQSPGGKERTRHEFM 306 (333)
Q Consensus 236 --------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~-~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~ 306 (333)
+|||+|+|++|+++|++|+++|+|+|+|++.|.+.++.. ...........+|+.|+.+..+|++|+..||+
T Consensus 236 ~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q 315 (342)
T KOG3178|consen 236 KGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQ 315 (342)
T ss_pred CcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHH
Confidence 999999999999999999999999999999999888632 22222445567889998877789999999999
Q ss_pred HHHHhCCCCeeEEeecCCceeEEEEeC
Q 035738 307 TLATGAGFSGISCERAIGNLWVMEFYK 333 (333)
Q Consensus 307 ~ll~~aGf~~~~~~~~~~~~~vie~~~ 333 (333)
.++.++||.+..+.-.+..+++||.+|
T Consensus 316 ~l~~~~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 316 ALLPEEGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred hcchhhcCceeEEEeccCccchheeCC
Confidence 999999999999999999999999986
No 2
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=100.00 E-value=4.1e-36 Score=273.18 Aligned_cols=267 Identities=18% Similarity=0.276 Sum_probs=194.9
Q ss_pred HHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccc
Q 035738 25 LPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKY 104 (333)
Q Consensus 25 ~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~ 104 (333)
..++|++|++|||||.|++ ||.|++|||+++|+ +++.++|||++|+++|++++. ++.|++|+.+..
T Consensus 3 ~~~~l~aa~~Lglfd~L~~----gp~t~~eLA~~~~~----~~~~~~~lL~~L~~lgll~~~------~~~y~~t~~~~~ 68 (306)
T TIGR02716 3 EFSCMKAAIELDLFSHMAE----GPKDLATLAADTGS----VPPRLEMLLETLRQMRVINLE------DGKWSLTEFADY 68 (306)
T ss_pred hHHHHHHHHHcCcHHHHhc----CCCCHHHHHHHcCC----ChHHHHHHHHHHHhCCCeEec------CCcEecchhHHh
Confidence 4679999999999999987 59999999999999 999999999999999999985 689999999997
Q ss_pred cccCCCCC---ChhhhHhhccChhhHHhhhhhHHHHhcCCChhhhhcCCChhhhhcCCchhHHHHHHHHh-hhhhhhHHH
Q 035738 105 YVPNKDGV---SLGPGIQITHDKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMY-NYTSLVMSN 180 (333)
Q Consensus 105 l~~~~~~~---~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~-~~~~~~~~~ 180 (333)
++.+++.. ++.++..+. .......|.+|.+++|+ .++|+..+ ++....++. ..|...|. .......+.
T Consensus 69 ~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~r~-~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 140 (306)
T TIGR02716 69 MFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRG-QKNFKGQV-----PYPPVTRED-NLYFEEIHRSNAKFAIQL 140 (306)
T ss_pred hccCCccchhhhcCchHHHH-HHHHHHHHHhHHHHhcC-Cccccccc-----CCCCCCHHH-HHhHHHHHHhcchhHHHH
Confidence 77665431 122333332 11223568899999984 44443222 222222222 23444444 333344556
Q ss_pred HHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC---C---------------------Ce-
Q 035738 181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH---P---------------------CM- 235 (333)
Q Consensus 181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~---~---------------------gv- 235 (333)
+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.++++ . ++
T Consensus 141 l~~~~~-~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v 219 (306)
T TIGR02716 141 LLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAV 219 (306)
T ss_pred HHHHcC-CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEE
Confidence 677666 888899999999999999999999999999999999888776532 0 01
Q ss_pred ---EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhH----HHhhCCCCCcCCHHHHHHH
Q 035738 236 ---WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVL----MMIQSPGGKERTRHEFMTL 308 (333)
Q Consensus 236 ---~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~----m~~~~~~g~~rt~~e~~~l 308 (333)
++||+|+++.+.++|++++++|+|||+++|.|.+.++.... .. ....+.. |+.. -...++.++|.+|
T Consensus 220 ~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~-~~---~~~~~~~~~~~~~~~--~~~~~~~~e~~~l 293 (306)
T TIGR02716 220 LFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENP-NF---DYLSHYILGAGMPFS--VLGFKEQARYKEI 293 (306)
T ss_pred EeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc-hh---hHHHHHHHHcccccc--cccCCCHHHHHHH
Confidence 88999999999999999999999999999999987654321 11 1111111 1111 1123458999999
Q ss_pred HHhCCCCeeEEe
Q 035738 309 ATGAGFSGISCE 320 (333)
Q Consensus 309 l~~aGf~~~~~~ 320 (333)
|+++||+.++++
T Consensus 294 l~~aGf~~v~~~ 305 (306)
T TIGR02716 294 LESLGYKDVTMV 305 (306)
T ss_pred HHHcCCCeeEec
Confidence 999999988764
No 3
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=100.00 E-value=5.4e-36 Score=263.52 Aligned_cols=217 Identities=32% Similarity=0.590 Sum_probs=184.0
Q ss_pred ccccccccccccccccCCCCCChhhhHhhccChhhHHhhhhhHHHHhcCCChhhhhcCCChhhhhcCCchhHHHHHHHHh
Q 035738 92 ARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMY 171 (333)
Q Consensus 92 ~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 171 (333)
++++|++|+.|+.|+.+++..++..++.+...+.+++.|.+|.+++++|.++|+..+|.++|+|++++|+....|+.+|.
T Consensus 2 ~~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 81 (241)
T PF00891_consen 2 EGDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGKPPFEKAFGTPFFEYLEEDPELAKRFNAAMA 81 (241)
T ss_dssp STEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS-HHHHHHSS-HHHHHHCSHHHHHHHHHHHH
T ss_pred CCCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCCCHHHHhcCCcHHHhhhhChHHHHHHHHHHH
Confidence 47899999999999988875578888877667889999999999999999999999998899999999999999999999
Q ss_pred hhhhhhH-HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCCCC----------------
Q 035738 172 NYTSLVM-SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPC---------------- 234 (333)
Q Consensus 172 ~~~~~~~-~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~g---------------- 234 (333)
..+.... ..+...++ +++..+|||||||+|.++..++++||+++++++|+|.+++.+++...
T Consensus 82 ~~~~~~~~~~~~~~~d-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~D 160 (241)
T PF00891_consen 82 EYSRLNAFDILLEAFD-FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVAD 160 (241)
T ss_dssp HHHHHHHHHHHHHHST-TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSES
T ss_pred hhhhcchhhhhhcccc-ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhcccc
Confidence 9998877 77777777 99999999999999999999999999999999999999987654211
Q ss_pred e----EEEccCChhHHHHHHHHHHHhCCCC--cEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHH
Q 035738 235 M----WILHDWNDEHCLKLLKNCYKSIPED--GKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTL 308 (333)
Q Consensus 235 v----~vLh~~~~~~~~~lL~~~~~~L~pg--G~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~l 308 (333)
+ +|||+|+|++|.+||++++++|+|| |+|+|+|.+.++....+........+|+.|++++ +|++||.+||++|
T Consensus 161 ~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~-~G~~rt~~e~~~l 239 (241)
T PF00891_consen 161 VYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLT-GGKERTEEEWEAL 239 (241)
T ss_dssp EEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHH-SSS-EEHHHHHHH
T ss_pred ceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhc-CCCCcCHHHHHHH
Confidence 1 9999999999999999999999999 9999999999987654322112257899999886 7999999999999
Q ss_pred HH
Q 035738 309 AT 310 (333)
Q Consensus 309 l~ 310 (333)
|+
T Consensus 240 l~ 241 (241)
T PF00891_consen 240 LK 241 (241)
T ss_dssp HH
T ss_pred hC
Confidence 85
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.60 E-value=1e-14 Score=125.73 Aligned_cols=135 Identities=16% Similarity=0.206 Sum_probs=101.9
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CC---e-----------------------EE
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PC---M-----------------------WI 237 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~g---v-----------------------~v 237 (333)
..++.+|||||||||..+..+++..+..+++++|+ +.|++.+++. .+ + ..
T Consensus 49 ~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fg 128 (238)
T COG2226 49 IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFG 128 (238)
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeeh
Confidence 44789999999999999999999999999999999 8999988753 11 1 88
Q ss_pred EccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhH-HHhhC----------------CCCCcC
Q 035738 238 LHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVL-MMIQS----------------PGGKER 300 (333)
Q Consensus 238 Lh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~-m~~~~----------------~~g~~r 300 (333)
||+++|.+ +.|++++|+|||||+++++|...++..... ....++.+. .+... +.-+..
T Consensus 129 lrnv~d~~--~aL~E~~RVlKpgG~~~vle~~~p~~~~~~---~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p 203 (238)
T COG2226 129 LRNVTDID--KALKEMYRVLKPGGRLLVLEFSKPDNPVLR---KAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFP 203 (238)
T ss_pred hhcCCCHH--HHHHHHHHhhcCCeEEEEEEcCCCCchhhH---HHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCC
Confidence 89999777 999999999999999999999887653221 111111111 11110 011345
Q ss_pred CHHHHHHHHHhCCCCeeEEeecCCcee
Q 035738 301 TRHEFMTLATGAGFSGISCERAIGNLW 327 (333)
Q Consensus 301 t~~e~~~ll~~aGf~~~~~~~~~~~~~ 327 (333)
+.+++.++++++||+.+.......+..
T Consensus 204 ~~~~l~~~~~~~gf~~i~~~~~~~G~~ 230 (238)
T COG2226 204 DQEELKQMIEKAGFEEVRYENLTFGIV 230 (238)
T ss_pred CHHHHHHHHHhcCceEEeeEeeeeeeE
Confidence 899999999999999998776665554
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.56 E-value=7.7e-14 Score=123.87 Aligned_cols=135 Identities=18% Similarity=0.172 Sum_probs=95.7
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCCCC---------CCe---------------------
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVPPH---------PCM--------------------- 235 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~---------~gv--------------------- 235 (333)
..+..+|||||||+|.++..+++.+ |+.+++++|+ +.+++.|++. .++
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 5567899999999999999998875 6789999999 8898876421 111
Q ss_pred --EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccc-hhhHH--H-hhCC-----------CCC
Q 035738 236 --WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSD-SDVLM--M-IQSP-----------GGK 298 (333)
Q Consensus 236 --~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~-~d~~m--~-~~~~-----------~g~ 298 (333)
.++|++++.. ++|++++++|+|||++++.|...++..... ....+ +...+ . .... -..
T Consensus 151 ~~~~l~~~~d~~--~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~ 225 (261)
T PLN02233 151 MGYGLRNVVDRL--KAMQEMYRVLKPGSRVSILDFNKSTQPFTT---SMQEWMIDNVVVPVATGYGLAKEYEYLKSSINE 225 (261)
T ss_pred EecccccCCCHH--HHHHHHHHHcCcCcEEEEEECCCCCcHHHH---HHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHh
Confidence 6678888665 899999999999999999999765531110 00000 00000 0 0000 023
Q ss_pred cCCHHHHHHHHHhCCCCeeEEeecCCcee
Q 035738 299 ERTRHEFMTLATGAGFSGISCERAIGNLW 327 (333)
Q Consensus 299 ~rt~~e~~~ll~~aGf~~~~~~~~~~~~~ 327 (333)
.++.+++.++++++||+.++.....++..
T Consensus 226 f~s~~el~~ll~~aGF~~~~~~~~~~g~~ 254 (261)
T PLN02233 226 YLTGEELEKLALEAGFSSAKHYEISGGLM 254 (261)
T ss_pred cCCHHHHHHHHHHCCCCEEEEEEcCCCee
Confidence 56899999999999999999888775554
No 6
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.52 E-value=1.7e-14 Score=126.75 Aligned_cols=133 Identities=17% Similarity=0.143 Sum_probs=95.7
Q ss_pred CCCCeEEEEcCCccHHHHHHHHH--CCCCeEEEeec-hhHhhhCCCC-------CCe---------------------EE
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTK--YPYIKGINFDL-PHVIEHVPPH-------PCM---------------------WI 237 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~~-------~gv---------------------~v 237 (333)
.+..+|||||||+|..+..+++. +|+.+++++|+ +.+++.|++. ..+ .+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 45679999999999999999987 47899999999 8898877542 011 66
Q ss_pred EccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHH-----------------hhCCCCCcC
Q 035738 238 LHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMM-----------------IQSPGGKER 300 (333)
Q Consensus 238 Lh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~-----------------~~~~~g~~r 300 (333)
+|++++++...+|++++++|+|||.+++.|.+.+++.... . ....+.+. .....-...
T Consensus 132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~--~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 206 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKIN--H---LLIDLHHQFKRANGYSELEISQKRTALENVMRTD 206 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHH--H---HHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCC
Confidence 7888887788999999999999999999998776542211 0 01111100 000012356
Q ss_pred CHHHHHHHHHhCCCCeeEEeecCCce
Q 035738 301 TRHEFMTLATGAGFSGISCERAIGNL 326 (333)
Q Consensus 301 t~~e~~~ll~~aGf~~~~~~~~~~~~ 326 (333)
|.+++.+++++|||+.+++......+
T Consensus 207 s~~~~~~~l~~aGF~~~~~~~~~~~~ 232 (239)
T TIGR00740 207 SIETHKARLKNVGFSHVELWFQCFNF 232 (239)
T ss_pred CHHHHHHHHHHcCCchHHHHHHHHhH
Confidence 89999999999999987765443333
No 7
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.52 E-value=1.2e-13 Score=117.08 Aligned_cols=149 Identities=17% Similarity=0.220 Sum_probs=106.0
Q ss_pred HHHHHHHHhhhhhhhHHHHH-hhccCCCCCCeEEEEcCCccHHHHHHHHHCCC------CeEEEeec-hhHhhhCCCCC-
Q 035738 163 NKHFNTVMYNYTSLVMSNIL-ESYKGFDNIKQLVDVGGGIGVTLQAITTKYPY------IKGINFDL-PHVIEHVPPHP- 233 (333)
Q Consensus 163 ~~~f~~~m~~~~~~~~~~~~-~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~------~~~~~~D~-~~~~~~a~~~~- 233 (333)
....+++|...-+..+++.. +.+. .....++|||+||||..+..+++.-++ .+++++|+ |++++.+++..
T Consensus 73 YD~mND~mSlGiHRlWKd~~v~~L~-p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~ 151 (296)
T KOG1540|consen 73 YDIMNDAMSLGIHRLWKDMFVSKLG-PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAK 151 (296)
T ss_pred HHHHHHHhhcchhHHHHHHhhhccC-CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHh
Confidence 34567778777776665543 3343 556799999999999999999998877 78999999 99998876531
Q ss_pred ------C--e-----------------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCcccccc
Q 035738 234 ------C--M-----------------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKS 282 (333)
Q Consensus 234 ------g--v-----------------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~ 282 (333)
+ + .-+.+|++.+ +.|++++|+|||||++.+.|+..-++.. ...+
T Consensus 152 ~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~--k~l~EAYRVLKpGGrf~cLeFskv~~~~---l~~f 226 (296)
T KOG1540|consen 152 KRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQ--KALREAYRVLKPGGRFSCLEFSKVENEP---LKWF 226 (296)
T ss_pred hcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHH--HHHHHHHHhcCCCcEEEEEEccccccHH---HHHH
Confidence 1 1 5567788776 9999999999999999999986544211 1111
Q ss_pred cc-----------------chhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeE
Q 035738 283 NS-----------------DSDVLMMIQSPGGKERTRHEFMTLATGAGFSGIS 318 (333)
Q Consensus 283 ~~-----------------~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 318 (333)
.. +....++.+. =-+..+.+++..+.++|||+.+.
T Consensus 227 y~~ysf~VlpvlG~~iagd~~sYqYLveS-I~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 227 YDQYSFDVLPVLGEIIAGDRKSYQYLVES-IRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HHhhhhhhhchhhHhhhhhHhhhhhHHhh-hhcCCCHHHHHHHHHHcCCcccc
Confidence 11 1111122221 12356899999999999999887
No 8
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.51 E-value=2.9e-15 Score=130.25 Aligned_cols=140 Identities=16% Similarity=0.244 Sum_probs=63.7
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCCCC------CCe-----------------------E
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVPPH------PCM-----------------------W 236 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~gv-----------------------~ 236 (333)
..++.+|||||||||..+..+++.. |+.+++++|+ +.|++.+++. .++ +
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 5567899999999999999999875 6789999999 8999988642 111 6
Q ss_pred EEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchh----------------hHHHhhCCCCCcC
Q 035738 237 ILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSD----------------VLMMIQSPGGKER 300 (333)
Q Consensus 237 vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d----------------~~m~~~~~~g~~r 300 (333)
.||+++|.. +.|++++++|||||+++|+|...|+.+-.. ..+..++. ..++..+ -....
T Consensus 125 glrn~~d~~--~~l~E~~RVLkPGG~l~ile~~~p~~~~~~--~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~S-i~~f~ 199 (233)
T PF01209_consen 125 GLRNFPDRE--RALREMYRVLKPGGRLVILEFSKPRNPLLR--ALYKFYFKYILPLIGRLLSGDREAYRYLPES-IRRFP 199 (233)
T ss_dssp -GGG-SSHH--HHHHHHHHHEEEEEEEEEEEEEB-SSHHHH--HHHHH--------------------------------
T ss_pred hHHhhCCHH--HHHHHHHHHcCCCeEEEEeeccCCCCchhh--ceeeeeecccccccccccccccccccccccc-ccccc
Confidence 688888765 899999999999999999999887642100 00000000 0001000 01234
Q ss_pred CHHHHHHHHHhCCCCeeEEeecCCce-eEEEEe
Q 035738 301 TRHEFMTLATGAGFSGISCERAIGNL-WVMEFY 332 (333)
Q Consensus 301 t~~e~~~ll~~aGf~~~~~~~~~~~~-~vie~~ 332 (333)
+.+++.++++++||+.++..+...+. .+..++
T Consensus 200 ~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~ 232 (233)
T PF01209_consen 200 SPEELKELLEEAGFKNVEYRPLTFGIVTIHVGT 232 (233)
T ss_dssp ---------------------------------
T ss_pred ccccccccccccccccccccccccccccccccC
Confidence 78999999999999999998876554 344443
No 9
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.48 E-value=4.5e-14 Score=124.53 Aligned_cols=131 Identities=18% Similarity=0.157 Sum_probs=92.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHH--HCCCCeEEEeec-hhHhhhCCCC------C-Ce---------------------EE
Q 035738 189 DNIKQLVDVGGGIGVTLQAITT--KYPYIKGINFDL-PHVIEHVPPH------P-CM---------------------WI 237 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~--~~p~~~~~~~D~-~~~~~~a~~~------~-gv---------------------~v 237 (333)
.+..+|||||||+|..+..+++ .+|+.+++++|+ +.+++.++++ . .+ .+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 4667999999999999999988 468999999999 8999887542 0 11 66
Q ss_pred EccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhH-----------HH--hhCCCCCcCCHHH
Q 035738 238 LHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVL-----------MM--IQSPGGKERTRHE 304 (333)
Q Consensus 238 Lh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~-----------m~--~~~~~g~~rt~~e 304 (333)
+|.+++++..+++++++++|+|||.+++.|.+..++...... ....+.+.. .. .....-...+.++
T Consensus 135 l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~ 213 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVET 213 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHH
Confidence 788887777899999999999999999999876654322100 000011110 00 0000112348999
Q ss_pred HHHHHHhCCCCeeEEe
Q 035738 305 FMTLATGAGFSGISCE 320 (333)
Q Consensus 305 ~~~ll~~aGf~~~~~~ 320 (333)
..+||++|||+.+.++
T Consensus 214 ~~~~L~~aGF~~v~~~ 229 (247)
T PRK15451 214 HKARLHKAGFEHSELW 229 (247)
T ss_pred HHHHHHHcCchhHHHH
Confidence 9999999999877654
No 10
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.48 E-value=2.6e-13 Score=112.36 Aligned_cols=153 Identities=12% Similarity=0.201 Sum_probs=112.5
Q ss_pred hHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-CCe-------------------
Q 035738 177 VMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-PCM------------------- 235 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~gv------------------- 235 (333)
.+.+++..++ .....+|+|+|||+|..+..|++++|...++|+|. ++|++.|++. |++
T Consensus 18 Pa~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dll 96 (257)
T COG4106 18 PARDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLL 96 (257)
T ss_pred cHHHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchh
Confidence 3567888888 88999999999999999999999999999999999 8999998764 321
Q ss_pred ---EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhC---CCCCcCCHHHHHHHH
Q 035738 236 ---WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQS---PGGKERTRHEFMTLA 309 (333)
Q Consensus 236 ---~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~---~~g~~rt~~e~~~ll 309 (333)
-+||.++|.. ++|.++...|.|||.|.+.-+..-+.+++..........-+-..... ......+.+.|.++|
T Consensus 97 faNAvlqWlpdH~--~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lL 174 (257)
T COG4106 97 FANAVLQWLPDHP--ELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELL 174 (257)
T ss_pred hhhhhhhhccccH--HHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHh
Confidence 7888888876 89999999999999999998866555443211111100001111000 123456899999999
Q ss_pred HhCCCCeeEEeecC------CceeEEEEeC
Q 035738 310 TGAGFSGISCERAI------GNLWVMEFYK 333 (333)
Q Consensus 310 ~~aGf~~~~~~~~~------~~~~vie~~~ 333 (333)
...+ ..+.++.+. +...|+||+|
T Consensus 175 a~~~-~rvDiW~T~Y~h~l~~a~aIvdWvk 203 (257)
T COG4106 175 APLA-CRVDIWHTTYYHQLPGADAIVDWVK 203 (257)
T ss_pred Cccc-ceeeeeeeeccccCCCccchhhhee
Confidence 9888 457776653 5567888876
No 11
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.47 E-value=6.3e-13 Score=117.88 Aligned_cols=138 Identities=14% Similarity=0.132 Sum_probs=93.2
Q ss_pred HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CC------------e---
Q 035738 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PC------------M--- 235 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~g------------v--- 235 (333)
...+++.++ .....+|||||||+|.++..+++++|+.+++++|+ +.+++.+++. .+ |
T Consensus 18 ~~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~fD~v~~~ 96 (255)
T PRK14103 18 FYDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDVRDWKPKPDTDVVVSN 96 (255)
T ss_pred HHHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcChhhCCCCCCceEEEEe
Confidence 346677666 66778999999999999999999999999999999 8898877652 00 1
Q ss_pred EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCcccccc---ccchhhH-HHhhCCCCCcCCHHHHHHHHHh
Q 035738 236 WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKS---NSDSDVL-MMIQSPGGKERTRHEFMTLATG 311 (333)
Q Consensus 236 ~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~---~~~~d~~-m~~~~~~g~~rt~~e~~~ll~~ 311 (333)
.+||++++.. ++|++++++|+|||++++..+.....+........ ..|.... ...........+.+++.++|++
T Consensus 97 ~~l~~~~d~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~ 174 (255)
T PRK14103 97 AALQWVPEHA--DLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTD 174 (255)
T ss_pred hhhhhCCCHH--HHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHh
Confidence 7778777654 89999999999999999875422111100000000 0111100 0000012234689999999999
Q ss_pred CCCCeeE
Q 035738 312 AGFSGIS 318 (333)
Q Consensus 312 aGf~~~~ 318 (333)
+||++..
T Consensus 175 aGf~v~~ 181 (255)
T PRK14103 175 AGCKVDA 181 (255)
T ss_pred CCCeEEE
Confidence 9997543
No 12
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.47 E-value=4e-13 Score=117.34 Aligned_cols=147 Identities=16% Similarity=0.175 Sum_probs=100.1
Q ss_pred HHhhccCCCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCCCC------CCe-----------------
Q 035738 181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVPPH------PCM----------------- 235 (333)
Q Consensus 181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~gv----------------- 235 (333)
++..+. .....+|||+|||+|..+..+++.+ |+.+++++|+ +.+++.+++. +++
T Consensus 37 ~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 115 (231)
T TIGR02752 37 TMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSF 115 (231)
T ss_pred HHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCc
Confidence 444454 6677899999999999999999886 6789999999 7887665431 111
Q ss_pred ------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhh----------------HHHhh
Q 035738 236 ------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDV----------------LMMIQ 293 (333)
Q Consensus 236 ------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~----------------~m~~~ 293 (333)
..+|++++.. ++|+++.+.|+|||++++.+...++... ........+.. .....
T Consensus 116 D~V~~~~~l~~~~~~~--~~l~~~~~~Lk~gG~l~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 191 (231)
T TIGR02752 116 DYVTIGFGLRNVPDYM--QVLREMYRVVKPGGKVVCLETSQPTIPG--FKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQE 191 (231)
T ss_pred cEEEEecccccCCCHH--HHHHHHHHHcCcCeEEEEEECCCCCChH--HHHHHHHHHcChhHHhhHHhcCCHHHHHHHHH
Confidence 4456666554 8999999999999999999876543211 00000000000 00000
Q ss_pred CCCCCcCCHHHHHHHHHhCCCCeeEEeecC-CceeEEEEeC
Q 035738 294 SPGGKERTRHEFMTLATGAGFSGISCERAI-GNLWVMEFYK 333 (333)
Q Consensus 294 ~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~~ 333 (333)
.....++.+++.++|+++||+.+++.... +..+++.++|
T Consensus 192 -~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 192 -STRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred -HHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 01234578999999999999999998887 5566777765
No 13
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.46 E-value=1.1e-12 Score=116.60 Aligned_cols=135 Identities=15% Similarity=0.260 Sum_probs=96.3
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----CCe------------------
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----PCM------------------ 235 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~gv------------------ 235 (333)
..+++.+. +.+..+|||||||+|..+..+++.+ ..+++++|+ +.+++.+++. ..+
T Consensus 42 ~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD 119 (263)
T PTZ00098 42 TKILSDIE-LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFD 119 (263)
T ss_pred HHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeE
Confidence 45666665 7788999999999999999998765 579999999 7777665531 011
Q ss_pred -----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHH
Q 035738 236 -----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLAT 310 (333)
Q Consensus 236 -----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~ 310 (333)
.++++++.++..++|++++++|+|||++++.|....+... +.. ...- +... ......+.++|.++|+
T Consensus 120 ~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~--~~~----~~~~-~~~~-~~~~~~~~~~~~~~l~ 191 (263)
T PTZ00098 120 MIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIEN--WDE----EFKA-YIKK-RKYTLIPIQEYGDLIK 191 (263)
T ss_pred EEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccC--cHH----HHHH-HHHh-cCCCCCCHHHHHHHHH
Confidence 3345566556679999999999999999999987654211 100 0110 1111 1223468899999999
Q ss_pred hCCCCeeEEeecC
Q 035738 311 GAGFSGISCERAI 323 (333)
Q Consensus 311 ~aGf~~~~~~~~~ 323 (333)
++||+.+++....
T Consensus 192 ~aGF~~v~~~d~~ 204 (263)
T PTZ00098 192 SCNFQNVVAKDIS 204 (263)
T ss_pred HCCCCeeeEEeCc
Confidence 9999999987754
No 14
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.39 E-value=5.5e-12 Score=114.94 Aligned_cols=120 Identities=25% Similarity=0.329 Sum_probs=90.2
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CC--------------------e---EEEccC
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PC--------------------M---WILHDW 241 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~g--------------------v---~vLh~~ 241 (333)
....+|||||||+|..+..+++..+..+++++|. +.+++.+++. .+ + .++|++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 3567999999999999999999988889999999 7888776542 11 0 567788
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEee
Q 035738 242 NDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCER 321 (333)
Q Consensus 242 ~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 321 (333)
++.+ ++|++++++|+|||++++.+...++.. ..+ ...+..+ ...+.+|+.++|+++||+.+++..
T Consensus 192 ~d~~--~~L~e~~rvLkPGG~LvIi~~~~p~~~----~~r--~~~~~~~-------~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 192 PDPQ--RGIKEAYRVLKIGGKACLIGPVHPTFW----LSR--FFADVWM-------LFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred CCHH--HHHHHHHHhcCCCcEEEEEEecCcchh----HHH--Hhhhhhc-------cCCCHHHHHHHHHHCCCeEEEEEE
Confidence 8765 799999999999999999877544311 000 0111111 135789999999999999999887
Q ss_pred cC
Q 035738 322 AI 323 (333)
Q Consensus 322 ~~ 323 (333)
..
T Consensus 257 i~ 258 (340)
T PLN02490 257 IG 258 (340)
T ss_pred cC
Confidence 64
No 15
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.38 E-value=1.2e-11 Score=108.43 Aligned_cols=148 Identities=15% Similarity=0.178 Sum_probs=100.5
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC-------CCe---------------
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH-------PCM--------------- 235 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~gv--------------- 235 (333)
.++..+. ..+..+|||||||+|.++..+++.+| +.+++++|+ +.+++.+++. ..+
T Consensus 42 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 120 (239)
T PRK00216 42 KTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDN 120 (239)
T ss_pred HHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCC
Confidence 3444444 44568999999999999999999998 789999999 7776655432 001
Q ss_pred --------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHH----hhCCC-------
Q 035738 236 --------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMM----IQSPG------- 296 (333)
Q Consensus 236 --------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~----~~~~~------- 296 (333)
.++|++++.. .+|+++.+.|+|||++++.+...+..... .....++...++ ....+
T Consensus 121 ~~D~I~~~~~l~~~~~~~--~~l~~~~~~L~~gG~li~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (239)
T PRK00216 121 SFDAVTIAFGLRNVPDID--KALREMYRVLKPGGRLVILEFSKPTNPPL---KKAYDFYLFKVLPLIGKLISKNAEAYSY 195 (239)
T ss_pred CccEEEEecccccCCCHH--HHHHHHHHhccCCcEEEEEEecCCCchHH---HHHHHHHHHhhhHHHHHHHcCCcHHHHH
Confidence 5567676554 89999999999999999999876543210 000000000000 00001
Q ss_pred -----CCcCCHHHHHHHHHhCCCCeeEEeecC-CceeEEEEeC
Q 035738 297 -----GKERTRHEFMTLATGAGFSGISCERAI-GNLWVMEFYK 333 (333)
Q Consensus 297 -----g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~~ 333 (333)
...++.++|.++|+++||+.+++.... +...++.++|
T Consensus 196 ~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 196 LAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 123578899999999999999999875 5567777765
No 16
>PLN02244 tocopherol O-methyltransferase
Probab=99.37 E-value=6.1e-12 Score=115.95 Aligned_cols=131 Identities=18% Similarity=0.171 Sum_probs=88.6
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe-----------------------EE
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM-----------------------WI 237 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv-----------------------~v 237 (333)
....+|||||||+|.++..+++++ +.+++++|+ +.+++.+++. ..+ .+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 567899999999999999999988 679999999 7777655431 011 55
Q ss_pred EccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCc-ccc-ccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCC
Q 035738 238 LHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTS-IES-KSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFS 315 (333)
Q Consensus 238 Lh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~-~~~-~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~ 315 (333)
+|++++.. +++++++++|+|||+++|.+....+..... ... .....++-...... --...+.++|.++++++||.
T Consensus 196 ~~h~~d~~--~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~-~p~~~s~~~~~~~l~~aGf~ 272 (340)
T PLN02244 196 GEHMPDKR--KFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYY-LPAWCSTSDYVKLAESLGLQ 272 (340)
T ss_pred hhccCCHH--HHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhcc-CCCCCCHHHHHHHHHHCCCC
Confidence 66777654 899999999999999999987654321110 000 00000111010000 11234799999999999999
Q ss_pred eeEEeecC
Q 035738 316 GISCERAI 323 (333)
Q Consensus 316 ~~~~~~~~ 323 (333)
.+++....
T Consensus 273 ~v~~~d~s 280 (340)
T PLN02244 273 DIKTEDWS 280 (340)
T ss_pred eeEeeeCc
Confidence 99887654
No 17
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.37 E-value=3.8e-12 Score=111.78 Aligned_cols=138 Identities=19% Similarity=0.246 Sum_probs=107.3
Q ss_pred HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------C-Ce--------------
Q 035738 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------P-CM-------------- 235 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-gv-------------- 235 (333)
.+.+.+.+. +.++.+|||||||.|.++..++++| +.+++++++ ++..+.+++. . .+
T Consensus 61 ~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~f 138 (283)
T COG2230 61 LDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPF 138 (283)
T ss_pred HHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccccc
Confidence 345667776 9999999999999999999999999 899999999 6777666542 1 11
Q ss_pred ------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHH
Q 035738 236 ------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLA 309 (333)
Q Consensus 236 ------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll 309 (333)
-+++++..+.-...++++++.|+|||++++.....++.... ....|+. -..+++|..++.+++.+..
T Consensus 139 DrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~----~~~~~i~---~yiFPgG~lPs~~~i~~~~ 211 (283)
T COG2230 139 DRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR----RFPDFID---KYIFPGGELPSISEILELA 211 (283)
T ss_pred ceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc----cchHHHH---HhCCCCCcCCCHHHHHHHH
Confidence 45556666666789999999999999999999987764321 1122222 2335899999999999999
Q ss_pred HhCCCCeeEEeecCC
Q 035738 310 TGAGFSGISCERAIG 324 (333)
Q Consensus 310 ~~aGf~~~~~~~~~~ 324 (333)
+++||++......+.
T Consensus 212 ~~~~~~v~~~~~~~~ 226 (283)
T COG2230 212 SEAGFVVLDVESLRP 226 (283)
T ss_pred HhcCcEEehHhhhcH
Confidence 999999888766553
No 18
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.35 E-value=8.3e-13 Score=117.41 Aligned_cols=143 Identities=15% Similarity=0.196 Sum_probs=94.7
Q ss_pred HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CC----e--------------
Q 035738 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PC----M-------------- 235 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~g----v-------------- 235 (333)
...+++.+. +.++.+|||||||.|.++..+++++ +++++++.+ +.-.+.+++. .| +
T Consensus 51 ~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f 128 (273)
T PF02353_consen 51 LDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF 128 (273)
T ss_dssp HHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence 345677776 8899999999999999999999999 789999998 5555554321 11 1
Q ss_pred ------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHH
Q 035738 236 ------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLA 309 (333)
Q Consensus 236 ------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll 309 (333)
.++.++.++....+++++.+.|+|||++++...+..+..... .. ....++..-..+|+|..++.+++...+
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~--~~-~~~~~~i~kyiFPgg~lps~~~~~~~~ 205 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHA--ER-RSSSDFIRKYIFPGGYLPSLSEILRAA 205 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHH--CT-TCCCHHHHHHTSTTS---BHHHHHHHH
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchh--hc-CCCceEEEEeeCCCCCCCCHHHHHHHH
Confidence 445666767777999999999999999999888776532110 00 001122223335899999999999999
Q ss_pred HhCCCCeeEEeecCCc
Q 035738 310 TGAGFSGISCERAIGN 325 (333)
Q Consensus 310 ~~aGf~~~~~~~~~~~ 325 (333)
+++||++..+...+.+
T Consensus 206 ~~~~l~v~~~~~~~~h 221 (273)
T PF02353_consen 206 EDAGLEVEDVENLGRH 221 (273)
T ss_dssp HHTT-EEEEEEE-HHH
T ss_pred hcCCEEEEEEEEcCcC
Confidence 9999999888776533
No 19
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.34 E-value=1.2e-11 Score=103.48 Aligned_cols=138 Identities=16% Similarity=0.121 Sum_probs=107.3
Q ss_pred eEEEEcCCccHHHHHHHHHCCCCeEEEeech-hHhhhCCC------CCC-----------------------------e-
Q 035738 193 QLVDVGGGIGVTLQAITTKYPYIKGINFDLP-HVIEHVPP------HPC-----------------------------M- 235 (333)
Q Consensus 193 ~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~------~~g-----------------------------v- 235 (333)
+|||||+|||.++..+++++|+++..--|.+ ......++ .++ |
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 6999999999999999999999988666662 22111110 000 0
Q ss_pred --EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCC
Q 035738 236 --WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAG 313 (333)
Q Consensus 236 --~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aG 313 (333)
+++|-.+.+.+..+++.+.++|+|||.|++.-++..++.-. ..-...+|-..-...+....|+.+++.++.+++|
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~t---s~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~G 184 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFT---SESNAAFDASLRSRDPEWGIRDIEDVEALAAAHG 184 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeC---CcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCC
Confidence 89999999999999999999999999999999988765321 1233556666654445677899999999999999
Q ss_pred CCeeEEeecCCceeEEEEeC
Q 035738 314 FSGISCERAIGNLWVMEFYK 333 (333)
Q Consensus 314 f~~~~~~~~~~~~~vie~~~ 333 (333)
|+.++.+.++...-.+.++|
T Consensus 185 L~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 185 LELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred CccCcccccCCCCeEEEEeC
Confidence 99999999998877777665
No 20
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.33 E-value=2.2e-12 Score=105.82 Aligned_cols=121 Identities=17% Similarity=0.159 Sum_probs=85.4
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------------CC---e----EEEccCChhHHH
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------------PC---M----WILHDWNDEHCL 247 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------~g---v----~vLh~~~~~~~~ 247 (333)
.....+|||||||+|.++..+.+... +++++|+ +.+++..... .+ + .+||++++..
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d~~-- 95 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEKRNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPDPE-- 95 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHHTTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSHHH--
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhhhhhhhhhhhhhhhhccccchhhHhhHHHHhhcccHH--
Confidence 45778999999999999999966544 8999999 7777551110 01 1 8889998654
Q ss_pred HHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeE
Q 035738 248 KLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGIS 318 (333)
Q Consensus 248 ~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 318 (333)
.+|+++++.|+|||++++.++...... ...+..+ ....... .....++.++|+++++++||++++
T Consensus 96 ~~l~~l~~~LkpgG~l~~~~~~~~~~~----~~~~~~~-~~~~~~~-~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 96 EFLKELSRLLKPGGYLVISDPNRDDPS----PRSFLKW-RYDRPYG-GHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp HHHHHHHHCEEEEEEEEEEEEBTTSHH----HHHHHHC-CGTCHHT-TTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHhcCCCCEEEEEEcCCcchh----hhHHHhc-CCcCccC-ceeccCCHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999764310 0001111 1111100 134567999999999999999875
No 21
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.33 E-value=1.1e-11 Score=119.64 Aligned_cols=133 Identities=16% Similarity=0.251 Sum_probs=96.4
Q ss_pred HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----CCe----------------
Q 035738 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----PCM---------------- 235 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~gv---------------- 235 (333)
...+++.+. .++..+|||||||+|..+..+++.+ +.+++++|+ +.+++.|+++ ..+
T Consensus 255 te~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~ 332 (475)
T PLN02336 255 TKEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNS 332 (475)
T ss_pred HHHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCC
Confidence 344566555 6677899999999999999998876 679999999 7888766432 001
Q ss_pred -------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHH
Q 035738 236 -------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTL 308 (333)
Q Consensus 236 -------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~l 308 (333)
.+++++++.. ++|++++++|+|||++++.+.......... ..... .. . .+...++.+++.++
T Consensus 333 fD~I~s~~~l~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~------~~~~~-~~-~-~g~~~~~~~~~~~~ 401 (475)
T PLN02336 333 FDVIYSRDTILHIQDKP--ALFRSFFKWLKPGGKVLISDYCRSPGTPSP------EFAEY-IK-Q-RGYDLHDVQAYGQM 401 (475)
T ss_pred EEEEEECCcccccCCHH--HHHHHHHHHcCCCeEEEEEEeccCCCCCcH------HHHHH-HH-h-cCCCCCCHHHHHHH
Confidence 4566676654 899999999999999999998765422111 11111 11 1 24567789999999
Q ss_pred HHhCCCCeeEEeecC
Q 035738 309 ATGAGFSGISCERAI 323 (333)
Q Consensus 309 l~~aGf~~~~~~~~~ 323 (333)
++++||+++++....
T Consensus 402 l~~aGF~~i~~~d~~ 416 (475)
T PLN02336 402 LKDAGFDDVIAEDRT 416 (475)
T ss_pred HHHCCCeeeeeecch
Confidence 999999999776543
No 22
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.32 E-value=4.4e-11 Score=103.59 Aligned_cols=144 Identities=16% Similarity=0.178 Sum_probs=97.5
Q ss_pred HHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hhHhhhCCCC----C----------------C-e--
Q 035738 181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPY-IKGINFDL-PHVIEHVPPH----P----------------C-M-- 235 (333)
Q Consensus 181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~----~----------------g-v-- 235 (333)
++..+. ..+..+|||+|||+|..+..+++.+|. .+++++|+ +.+++.+++. . + +
T Consensus 31 ~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 109 (223)
T TIGR01934 31 AVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDA 109 (223)
T ss_pred HHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEE
Confidence 334333 446789999999999999999999987 78999999 6776654321 0 0 1
Q ss_pred ----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCC--C-------------
Q 035738 236 ----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSP--G------------- 296 (333)
Q Consensus 236 ----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~--~------------- 296 (333)
.++|+.++. ..+|+++.+.|+|||++++.+...+.... +....+..+....+ .
T Consensus 110 i~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (223)
T TIGR01934 110 VTIAFGLRNVTDI--QKALREMYRVLKPGGRLVILEFSKPANAL------LKKFYKFYLKNVLPSIGGLISKNAEAYTYL 181 (223)
T ss_pred EEEeeeeCCcccH--HHHHHHHHHHcCCCcEEEEEEecCCCchh------hHHHHHHHHHHhhhhhhhhhcCCchhhHHH
Confidence 455666654 48999999999999999999986543210 01111111110000 0
Q ss_pred ----CCcCCHHHHHHHHHhCCCCeeEEeecCCce-eEEEEeC
Q 035738 297 ----GKERTRHEFMTLATGAGFSGISCERAIGNL-WVMEFYK 333 (333)
Q Consensus 297 ----g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~-~vie~~~ 333 (333)
....+.++|.++|+++||+.+++.+..++. .++.++|
T Consensus 182 ~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 182 PESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 123478899999999999999999887764 3555543
No 23
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.31 E-value=2.7e-11 Score=109.54 Aligned_cols=134 Identities=13% Similarity=0.086 Sum_probs=89.3
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCC-------CC-------------C----
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVP-------PH-------------P---- 233 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~-------------~---- 233 (333)
..++..+. .....+|||||||+|.++..++...+. +++++|. +.++..++ .. +
T Consensus 111 ~~~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~ 188 (314)
T TIGR00452 111 DRVLPHLS-PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYA 188 (314)
T ss_pred HHHHHhcC-CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCC
Confidence 34555444 445689999999999999999888764 7899998 65554321 00 0
Q ss_pred -C-e---EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHH
Q 035738 234 -C-M---WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTL 308 (333)
Q Consensus 234 -g-v---~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~l 308 (333)
+ | .+||+++++. ..|++++++|+|||.|++.+.+.+......... ....-.|. . .-..++.+++.+|
T Consensus 189 FD~V~s~gvL~H~~dp~--~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p---~~ry~k~~-n--v~flpS~~~L~~~ 260 (314)
T TIGR00452 189 FDTVFSMGVLYHRKSPL--EHLKQLKHQLVIKGELVLETLVIDGDLNTVLVP---KDRYAKMK-N--VYFIPSVSALKNW 260 (314)
T ss_pred cCEEEEcchhhccCCHH--HHHHHHHHhcCCCCEEEEEEEEecCccccccCc---hHHHHhcc-c--cccCCCHHHHHHH
Confidence 0 1 6777777664 899999999999999999887765432110000 00000011 0 1124589999999
Q ss_pred HHhCCCCeeEEeec
Q 035738 309 ATGAGFSGISCERA 322 (333)
Q Consensus 309 l~~aGf~~~~~~~~ 322 (333)
|+++||+.+++...
T Consensus 261 L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 261 LEKVGFENFRILDV 274 (314)
T ss_pred HHHCCCeEEEEEec
Confidence 99999999988754
No 24
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.30 E-value=1.4e-11 Score=107.08 Aligned_cols=117 Identities=16% Similarity=0.286 Sum_probs=85.9
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------C---------------C---e----EEEccC
Q 035738 192 KQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------P---------------C---M----WILHDW 241 (333)
Q Consensus 192 ~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~---------------g---v----~vLh~~ 241 (333)
.+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++. . + + .++|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 3799999999999999999999999999999 7776655431 0 0 0 445666
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEee
Q 035738 242 NDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCER 321 (333)
Q Consensus 242 ~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 321 (333)
++. ..+|+++++.|+|||++++.+...+...... . + . ......+.++|.++++++||++++...
T Consensus 81 ~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~--~------~-----~-~~~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 81 KDK--MDLFSNISRHLKDGGHLVLADFIANLLSAIE--H------E-----E-TTSYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred CCH--HHHHHHHHHHcCCCCEEEEEEcccccCcccc--c------c-----c-cccccCCHHHHHHHHHHCCCeEEEeEE
Confidence 554 4899999999999999999988543211000 0 0 0 012245789999999999999999887
Q ss_pred cCC
Q 035738 322 AIG 324 (333)
Q Consensus 322 ~~~ 324 (333)
...
T Consensus 145 ~~~ 147 (224)
T smart00828 145 ASL 147 (224)
T ss_pred CcH
Confidence 653
No 25
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.28 E-value=5.2e-11 Score=108.74 Aligned_cols=131 Identities=15% Similarity=0.107 Sum_probs=87.3
Q ss_pred HHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCC-------CCCC------------------
Q 035738 181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVP-------PHPC------------------ 234 (333)
Q Consensus 181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~g------------------ 234 (333)
+...++ .-.+.+|||||||+|.++..+++..+. +++++|. +.++..++ ...+
T Consensus 114 l~~~l~-~l~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD 191 (322)
T PRK15068 114 VLPHLS-PLKGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFD 191 (322)
T ss_pred HHHhhC-CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcC
Confidence 344444 234579999999999999999998776 5999998 55443211 0001
Q ss_pred e----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCC-CCcCCHHHHHHHH
Q 035738 235 M----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPG-GKERTRHEFMTLA 309 (333)
Q Consensus 235 v----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~-g~~rt~~e~~~ll 309 (333)
+ .+||+..+.. .+|+++++.|+|||.+++.+.+.+......... .. ....+ .+ -..++.+++.+||
T Consensus 192 ~V~s~~vl~H~~dp~--~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p---~~-~y~~~---~~~~~lps~~~l~~~L 262 (322)
T PRK15068 192 TVFSMGVLYHRRSPL--DHLKQLKDQLVPGGELVLETLVIDGDENTVLVP---GD-RYAKM---RNVYFIPSVPALKNWL 262 (322)
T ss_pred EEEECChhhccCCHH--HHHHHHHHhcCCCcEEEEEEEEecCCCccccCc---hh-HHhcC---ccceeCCCHHHHHHHH
Confidence 1 5677776654 899999999999999988776655432211000 00 00001 11 1246899999999
Q ss_pred HhCCCCeeEEeec
Q 035738 310 TGAGFSGISCERA 322 (333)
Q Consensus 310 ~~aGf~~~~~~~~ 322 (333)
+++||+.+++...
T Consensus 263 ~~aGF~~i~~~~~ 275 (322)
T PRK15068 263 ERAGFKDVRIVDV 275 (322)
T ss_pred HHcCCceEEEEeC
Confidence 9999999988765
No 26
>PRK04266 fibrillarin; Provisional
Probab=99.27 E-value=9.8e-11 Score=101.35 Aligned_cols=118 Identities=10% Similarity=0.066 Sum_probs=82.9
Q ss_pred ccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhh----hCCCCCC--------------------e-EEE
Q 035738 185 YKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIE----HVPPHPC--------------------M-WIL 238 (333)
Q Consensus 185 ~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~----~a~~~~g--------------------v-~vL 238 (333)
++ ..+..+|||+|||+|.++..+++..+..+++++|+ +.+++ .+++.++ + .++
T Consensus 68 l~-i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~ 146 (226)
T PRK04266 68 FP-IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIY 146 (226)
T ss_pred CC-CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEE
Confidence 44 67788999999999999999999888778999999 76655 3332111 1 667
Q ss_pred ccCChhH-HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCee
Q 035738 239 HDWNDEH-CLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGI 317 (333)
Q Consensus 239 h~~~~~~-~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~ 317 (333)
|+.++++ ...+|+++++.|||||+++|.=...+.+ ... .. .+..++..++++++||+.+
T Consensus 147 ~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d--------------~~~-----~~-~~~~~~~~~~l~~aGF~~i 206 (226)
T PRK04266 147 QDVAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSID--------------VTK-----DP-KEIFKEEIRKLEEGGFEIL 206 (226)
T ss_pred ECCCChhHHHHHHHHHHHhcCCCcEEEEEEeccccc--------------CcC-----CH-HHHHHHHHHHHHHcCCeEE
Confidence 8777553 3457899999999999999952211110 000 00 0123455699999999999
Q ss_pred EEeecC
Q 035738 318 SCERAI 323 (333)
Q Consensus 318 ~~~~~~ 323 (333)
+.+...
T Consensus 207 ~~~~l~ 212 (226)
T PRK04266 207 EVVDLE 212 (226)
T ss_pred EEEcCC
Confidence 998875
No 27
>PRK06922 hypothetical protein; Provisional
Probab=99.26 E-value=2.6e-11 Score=117.31 Aligned_cols=122 Identities=22% Similarity=0.319 Sum_probs=89.5
Q ss_pred CChhhhhcCCchhHHHHHHHHhhhhhhh--HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHh
Q 035738 150 MHTFEYAGLDPGFNKHFNTVMYNYTSLV--MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVI 226 (333)
Q Consensus 150 ~~~~~~~~~~~~~~~~f~~~m~~~~~~~--~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~ 226 (333)
..+|+++...++..++|...|....... .......++ +.++.+|||||||+|..+..+++.+|+.+++++|+ +.++
T Consensus 377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d-~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~ML 455 (677)
T PRK06922 377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD-YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVI 455 (677)
T ss_pred hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh-hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHH
Confidence 3578888888888888877665533321 111122233 55678999999999999999999999999999999 7778
Q ss_pred hhCCCC------------------C-----C-e------EEEccC-----------ChhHHHHHHHHHHHhCCCCcEEEE
Q 035738 227 EHVPPH------------------P-----C-M------WILHDW-----------NDEHCLKLLKNCYKSIPEDGKVIA 265 (333)
Q Consensus 227 ~~a~~~------------------~-----g-v------~vLh~~-----------~~~~~~~lL~~~~~~L~pgG~l~i 265 (333)
+.+++. + + + .++|+| ++++..++|++++++|||||+++|
T Consensus 456 e~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII 535 (677)
T PRK06922 456 DTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIII 535 (677)
T ss_pred HHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEE
Confidence 766431 1 0 0 445654 345678999999999999999999
Q ss_pred EeeecCC
Q 035738 266 VELMLPE 272 (333)
Q Consensus 266 ~e~~~~~ 272 (333)
.|.+.++
T Consensus 536 ~D~v~~E 542 (677)
T PRK06922 536 RDGIMTE 542 (677)
T ss_pred EeCccCC
Confidence 9976654
No 28
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.25 E-value=3.6e-11 Score=106.58 Aligned_cols=136 Identities=16% Similarity=0.137 Sum_probs=88.4
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe----------------
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM---------------- 235 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv---------------- 235 (333)
.+++.++ ....+|||||||+|.++..+++. ..+++++|+ +.+++.|++. .++
T Consensus 36 ~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~ 111 (255)
T PRK11036 36 RLLAELP--PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLET 111 (255)
T ss_pred HHHHhcC--CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCC
Confidence 4445443 35679999999999999999986 467999999 8888776532 111
Q ss_pred --------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhH---HH-----hhCCCCCc
Q 035738 236 --------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVL---MM-----IQSPGGKE 299 (333)
Q Consensus 236 --------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~---m~-----~~~~~g~~ 299 (333)
.+||+++++. .+|++++++|+|||+++++........... .....++.. +. ...+ ...
T Consensus 112 ~fD~V~~~~vl~~~~~~~--~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~p-~~~ 185 (255)
T PRK11036 112 PVDLILFHAVLEWVADPK--SVLQTLWSVLRPGGALSLMFYNANGLLMHN---MVAGNFDYVQAGMPKRKKRTLSP-DYP 185 (255)
T ss_pred CCCEEEehhHHHhhCCHH--HHHHHHHHHcCCCeEEEEEEECccHHHHHH---HHccChHHHHhcCccccccCCCC-CCC
Confidence 5666676664 899999999999999998866432100000 000000000 00 0000 123
Q ss_pred CCHHHHHHHHHhCCCCeeEEeecCCc
Q 035738 300 RTRHEFMTLATGAGFSGISCERAIGN 325 (333)
Q Consensus 300 rt~~e~~~ll~~aGf~~~~~~~~~~~ 325 (333)
.+.+++.++|+++||+++++.-...+
T Consensus 186 ~~~~~l~~~l~~aGf~~~~~~gi~~~ 211 (255)
T PRK11036 186 LDPEQVYQWLEEAGWQIMGKTGVRVF 211 (255)
T ss_pred CCHHHHHHHHHHCCCeEeeeeeEEEE
Confidence 57899999999999999877655433
No 29
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.25 E-value=9.3e-11 Score=104.15 Aligned_cols=135 Identities=13% Similarity=0.161 Sum_probs=90.2
Q ss_pred HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-CCe--------------------
Q 035738 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-PCM-------------------- 235 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~gv-------------------- 235 (333)
...++..++ ..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. +++
T Consensus 20 ~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 98 (258)
T PRK01683 20 ARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIF 98 (258)
T ss_pred HHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEE
Confidence 446666666 67788999999999999999999999999999999 8888877653 111
Q ss_pred --EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccc------cccchhhHHHhhCCCCCcCCHHHHHH
Q 035738 236 --WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESK------SNSDSDVLMMIQSPGGKERTRHEFMT 307 (333)
Q Consensus 236 --~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~------~~~~~d~~m~~~~~~g~~rt~~e~~~ 307 (333)
.++|..++.. ++|++++++|+|||++++.-+ +....+.... ...|...............+.+++.+
T Consensus 99 ~~~~l~~~~d~~--~~l~~~~~~LkpgG~~~~~~~---~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 173 (258)
T PRK01683 99 ANASLQWLPDHL--ELFPRLVSLLAPGGVLAVQMP---DNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYD 173 (258)
T ss_pred EccChhhCCCHH--HHHHHHHHhcCCCcEEEEECC---CCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHH
Confidence 6677776654 899999999999999988632 2111000000 00011110000000123457889999
Q ss_pred HHHhCCCCeeEE
Q 035738 308 LATGAGFSGISC 319 (333)
Q Consensus 308 ll~~aGf~~~~~ 319 (333)
++.++|+. +++
T Consensus 174 ~l~~~g~~-v~~ 184 (258)
T PRK01683 174 ALAPAACR-VDI 184 (258)
T ss_pred HHHhCCCc-eee
Confidence 99999986 444
No 30
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.24 E-value=9.1e-11 Score=99.84 Aligned_cols=120 Identities=16% Similarity=0.117 Sum_probs=86.0
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe----------------
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM---------------- 235 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv---------------- 235 (333)
+.+++.++ .....+|||+|||+|..+..++++ ..+++++|+ +.+++.+++. .++
T Consensus 20 ~~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~f 96 (197)
T PRK11207 20 SEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEY 96 (197)
T ss_pred HHHHHhcc-cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCc
Confidence 44555555 445689999999999999999986 468999999 7787765431 111
Q ss_pred ------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHH
Q 035738 236 ------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLA 309 (333)
Q Consensus 236 ------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll 309 (333)
.++|++++++...++++++++|+|||++++++....++.... . . -....+.+|+.+++
T Consensus 97 D~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~------~--~--------~~~~~~~~el~~~~ 160 (197)
T PRK11207 97 DFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT------V--G--------FPFAFKEGELRRYY 160 (197)
T ss_pred CEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCC------C--C--------CCCccCHHHHHHHh
Confidence 567888877788999999999999999888776544321100 0 0 01124688999999
Q ss_pred HhCCCCeeEE
Q 035738 310 TGAGFSGISC 319 (333)
Q Consensus 310 ~~aGf~~~~~ 319 (333)
+ ||++++.
T Consensus 161 ~--~~~~~~~ 168 (197)
T PRK11207 161 E--GWEMVKY 168 (197)
T ss_pred C--CCeEEEe
Confidence 7 8987766
No 31
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.24 E-value=1e-10 Score=104.74 Aligned_cols=125 Identities=15% Similarity=0.283 Sum_probs=89.3
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hhHhhhCCCC------CC-----------------e------E
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTK-YPYIKGINFDL-PHVIEHVPPH------PC-----------------M------W 236 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~------~g-----------------v------~ 236 (333)
.....+|||||||+|..+..+++. .+..+++++|+ +.+++.++++ .+ + .
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 567889999999999988877765 46678999999 8888877642 11 1 4
Q ss_pred EEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCe
Q 035738 237 ILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSG 316 (333)
Q Consensus 237 vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~ 316 (333)
++|.+++.. ++|++++++|+|||++++.+......... ....+..+... ..+...+.++|.++|+++||..
T Consensus 155 v~~~~~d~~--~~l~~~~r~LkpGG~l~i~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~e~~~~l~~aGf~~ 225 (272)
T PRK11873 155 VINLSPDKE--RVFKEAFRVLKPGGRFAISDVVLRGELPE------EIRNDAELYAG-CVAGALQEEEYLAMLAEAGFVD 225 (272)
T ss_pred cccCCCCHH--HHHHHHHHHcCCCcEEEEEEeeccCCCCH------HHHHhHHHHhc-cccCCCCHHHHHHHHHHCCCCc
Confidence 556666544 79999999999999999999875432110 01112222211 2345668999999999999999
Q ss_pred eEEee
Q 035738 317 ISCER 321 (333)
Q Consensus 317 ~~~~~ 321 (333)
+++..
T Consensus 226 v~i~~ 230 (272)
T PRK11873 226 ITIQP 230 (272)
T ss_pred eEEEe
Confidence 87754
No 32
>PRK08317 hypothetical protein; Provisional
Probab=99.24 E-value=1.1e-10 Score=102.17 Aligned_cols=137 Identities=15% Similarity=0.198 Sum_probs=90.3
Q ss_pred HHhhccCCCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCCCC-----CCe------------------
Q 035738 181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVPPH-----PCM------------------ 235 (333)
Q Consensus 181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-----~gv------------------ 235 (333)
+...+. .....+|||+|||+|.++..+++.+ |..+++++|+ +..++.+++. +++
T Consensus 11 ~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 89 (241)
T PRK08317 11 TFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFD 89 (241)
T ss_pred HHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCce
Confidence 444455 6778899999999999999999988 7889999999 7776655432 111
Q ss_pred -----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHH
Q 035738 236 -----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLAT 310 (333)
Q Consensus 236 -----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~ 310 (333)
.+++++++.. .++++++++|+|||++++.++............. ....+.-..........+..+|.++|+
T Consensus 90 ~v~~~~~~~~~~~~~--~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~ 165 (241)
T PRK08317 90 AVRSDRVLQHLEDPA--RALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRA--LMRKILNFWSDHFADPWLGRRLPGLFR 165 (241)
T ss_pred EEEEechhhccCCHH--HHHHHHHHHhcCCcEEEEEecCCCceeecCCChH--HHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 5566666654 8999999999999999999864321100000000 011111111111223345678999999
Q ss_pred hCCCCeeEEeec
Q 035738 311 GAGFSGISCERA 322 (333)
Q Consensus 311 ~aGf~~~~~~~~ 322 (333)
++||+.+++...
T Consensus 166 ~aGf~~~~~~~~ 177 (241)
T PRK08317 166 EAGLTDIEVEPY 177 (241)
T ss_pred HcCCCceeEEEE
Confidence 999998876543
No 33
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.22 E-value=1.6e-11 Score=111.59 Aligned_cols=124 Identities=11% Similarity=0.093 Sum_probs=85.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----C---Ce-----------------------EEE
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----P---CM-----------------------WIL 238 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~---gv-----------------------~vL 238 (333)
...+|||||||+|.++..+++ ++.+++++|. +.+++.|+.+ + ++ .+|
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 456999999999999998876 4678999999 8888776531 0 11 678
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCC-----CCcCCHHHHHHHHHhCC
Q 035738 239 HDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPG-----GKERTRHEFMTLATGAG 313 (333)
Q Consensus 239 h~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~-----g~~rt~~e~~~ll~~aG 313 (333)
|+++++. .+|++++++|+|||.++|.+...... ...... ......+ ...+. .+.++.+|+.++|+++|
T Consensus 209 eHv~d~~--~~L~~l~r~LkPGG~liist~nr~~~---~~~~~i-~~~eyi~-~~lp~gth~~~~f~tp~eL~~lL~~aG 281 (322)
T PLN02396 209 EHVANPA--EFCKSLSALTIPNGATVLSTINRTMR---AYASTI-VGAEYIL-RWLPKGTHQWSSFVTPEELSMILQRAS 281 (322)
T ss_pred HhcCCHH--HHHHHHHHHcCCCcEEEEEECCcCHH---HHHHhh-hhHHHHH-hcCCCCCcCccCCCCHHHHHHHHHHcC
Confidence 8888775 89999999999999999987643210 000000 0000011 00111 23578999999999999
Q ss_pred CCeeEEeec
Q 035738 314 FSGISCERA 322 (333)
Q Consensus 314 f~~~~~~~~ 322 (333)
|+++++...
T Consensus 282 f~i~~~~G~ 290 (322)
T PLN02396 282 VDVKEMAGF 290 (322)
T ss_pred CeEEEEeee
Confidence 999988543
No 34
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.21 E-value=1.3e-10 Score=105.48 Aligned_cols=76 Identities=12% Similarity=0.254 Sum_probs=63.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC-----CCe---------------------------
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH-----PCM--------------------------- 235 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-----~gv--------------------------- 235 (333)
...+|||+|||+|..+..++++.+ ..+++++|+ +.+++.+++. |++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 557899999999999999999987 688999999 7787655421 211
Q ss_pred ---EEEccCChhHHHHHHHHHHHhCCCCcEEEE
Q 035738 236 ---WILHDWNDEHCLKLLKNCYKSIPEDGKVIA 265 (333)
Q Consensus 236 ---~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i 265 (333)
..+++++++++.++|++++++|+|||.++|
T Consensus 143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred EecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 457778888899999999999999999986
No 35
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.20 E-value=1.7e-10 Score=97.95 Aligned_cols=120 Identities=13% Similarity=0.060 Sum_probs=84.9
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC--------------------C---C-
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH--------------------P---C- 234 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------------------~---g- 234 (333)
.+++.++ ...+.+|||+|||+|..+..++++ ..+++++|+ +.+++.+++. + +
T Consensus 21 ~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~ 97 (195)
T TIGR00477 21 AVREAVK-TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDF 97 (195)
T ss_pred HHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCE
Confidence 4555555 445679999999999999999985 468999999 7788755321 0 0
Q ss_pred e---EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHh
Q 035738 235 M---WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATG 311 (333)
Q Consensus 235 v---~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~ 311 (333)
| .++|+++++....++++++++|+|||++++++....+.. +. .. +-....+.+|+.++|+
T Consensus 98 I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~-~~-------~~--------~~~~~~~~~el~~~f~- 160 (195)
T TIGR00477 98 IFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADY-PC-------HM--------PFSFTFKEDELRQYYA- 160 (195)
T ss_pred EEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCC-CC-------CC--------CcCccCCHHHHHHHhC-
Confidence 1 557888877778999999999999999888876533211 00 00 0112457889999995
Q ss_pred CCCCeeEEe
Q 035738 312 AGFSGISCE 320 (333)
Q Consensus 312 aGf~~~~~~ 320 (333)
+|+++...
T Consensus 161 -~~~~~~~~ 168 (195)
T TIGR00477 161 -DWELLKYN 168 (195)
T ss_pred -CCeEEEee
Confidence 58777665
No 36
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.16 E-value=2.3e-10 Score=106.79 Aligned_cols=135 Identities=8% Similarity=0.081 Sum_probs=96.9
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-CC--e--------------------
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-PC--M-------------------- 235 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~g--v-------------------- 235 (333)
.+++.+. ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. .+ +
T Consensus 158 ~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs~ 235 (383)
T PRK11705 158 LICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVSV 235 (383)
T ss_pred HHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEEe
Confidence 4555555 6778899999999999999998876 579999999 7888776542 11 1
Q ss_pred EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCC
Q 035738 236 WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFS 315 (333)
Q Consensus 236 ~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~ 315 (333)
.++++.++.....+++++.++|+|||++++.+...+..... ...+++-.. +++|..++.+++.+.++ .||.
T Consensus 236 ~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~-----~~~~i~~yi---fp~g~lps~~~i~~~~~-~~~~ 306 (383)
T PRK11705 236 GMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTN-----VDPWINKYI---FPNGCLPSVRQIAQASE-GLFV 306 (383)
T ss_pred CchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCC-----CCCCceeee---cCCCcCCCHHHHHHHHH-CCcE
Confidence 34566666666789999999999999999988765532111 012222221 36788889999988866 5898
Q ss_pred eeEEeecCCc
Q 035738 316 GISCERAIGN 325 (333)
Q Consensus 316 ~~~~~~~~~~ 325 (333)
+.++...+.+
T Consensus 307 v~d~~~~~~h 316 (383)
T PRK11705 307 MEDWHNFGAD 316 (383)
T ss_pred EEEEecChhh
Confidence 8887766543
No 37
>PRK06202 hypothetical protein; Provisional
Probab=99.16 E-value=6.2e-10 Score=97.29 Aligned_cols=125 Identities=17% Similarity=0.141 Sum_probs=87.6
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHH----CCCCeEEEeec-hhHhhhCCCC---CCe-----------------------E
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTK----YPYIKGINFDL-PHVIEHVPPH---PCM-----------------------W 236 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~---~gv-----------------------~ 236 (333)
..+..+|||||||+|.++..+++. .|+.+++++|+ +.+++.+++. +++ .
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~ 137 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNH 137 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECC
Confidence 356789999999999999888764 46679999999 8998877653 111 7
Q ss_pred EEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhh------CCC-----CCcCCHHHH
Q 035738 237 ILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQ------SPG-----GKERTRHEF 305 (333)
Q Consensus 237 vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~------~~~-----g~~rt~~e~ 305 (333)
+||++++++..++|++++++++ |.+++.|...+... ...+....... .++ -+.++.+|+
T Consensus 138 ~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~--------~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el 207 (232)
T PRK06202 138 FLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLA--------YALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAEL 207 (232)
T ss_pred eeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHH--------HHHHHHHHHHhccCceeeccchHHHHhhcCHHHH
Confidence 8999998887899999999997 66777766543210 00000000000 011 135689999
Q ss_pred HHHHHhCCCCeeEEeecC
Q 035738 306 MTLATGAGFSGISCERAI 323 (333)
Q Consensus 306 ~~ll~~aGf~~~~~~~~~ 323 (333)
.+++++ ||++...++..
T Consensus 208 ~~ll~~-Gf~~~~~~~~~ 224 (232)
T PRK06202 208 AALAPQ-GWRVERQWPFR 224 (232)
T ss_pred HHHhhC-CCeEEecccee
Confidence 999999 99988877663
No 38
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.15 E-value=1.7e-10 Score=97.52 Aligned_cols=125 Identities=21% Similarity=0.291 Sum_probs=93.6
Q ss_pred CeEEEEcCCccHHHHHHHHHCCC--CeEEEeec-hhHhhhCCCCCC--------------------------e------E
Q 035738 192 KQLVDVGGGIGVTLQAITTKYPY--IKGINFDL-PHVIEHVPPHPC--------------------------M------W 236 (333)
Q Consensus 192 ~~vlDVGgG~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~~g--------------------------v------~ 236 (333)
.+||+||||.|.+...+++.+|+ +++..+|. |.+++..+++++ + +
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 38999999999999999999988 89999998 889888765410 0 8
Q ss_pred EEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCC---cCCHHHHHHHHHhCC
Q 035738 237 ILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGK---ERTRHEFMTLATGAG 313 (333)
Q Consensus 237 vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~---~rt~~e~~~ll~~aG 313 (333)
+|...++++-...++++++.|||||.|++.|....+-... .......++....+. .+|- ..+.+++.+|+.+||
T Consensus 153 vLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~Dlaql--RF~~~~~i~~nfYVR-gDGT~~YfF~~eeL~~~f~~ag 229 (264)
T KOG2361|consen 153 VLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQL--RFKKGQCISENFYVR-GDGTRAYFFTEEELDELFTKAG 229 (264)
T ss_pred EEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHH--hccCCceeecceEEc-cCCceeeeccHHHHHHHHHhcc
Confidence 8888888888999999999999999999999976542110 000112222222222 1332 358999999999999
Q ss_pred CCeeEE
Q 035738 314 FSGISC 319 (333)
Q Consensus 314 f~~~~~ 319 (333)
|..++.
T Consensus 230 f~~~~~ 235 (264)
T KOG2361|consen 230 FEEVQL 235 (264)
T ss_pred cchhcc
Confidence 987764
No 39
>PRK05785 hypothetical protein; Provisional
Probab=99.15 E-value=2.9e-10 Score=98.74 Aligned_cols=135 Identities=12% Similarity=0.022 Sum_probs=90.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCCC--------------C----e---EEEccCChhHHH
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPHP--------------C----M---WILHDWNDEHCL 247 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~--------------g----v---~vLh~~~~~~~~ 247 (333)
...+|||||||||..+..+++.+ +.+++++|+ +.+++.+++.. + | ..||++++.+
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~-- 127 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVADDKVVGSFEALPFRDKSFDVVMSSFALHASDNIE-- 127 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhccceEEechhhCCCCCCCEEEEEecChhhccCCHH--
Confidence 36799999999999999999887 578999999 89998876431 0 1 6788888765
Q ss_pred HHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccc-cchh--hHHHhhCCCC-------------CcCCHHHHHHHHHh
Q 035738 248 KLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSN-SDSD--VLMMIQSPGG-------------KERTRHEFMTLATG 311 (333)
Q Consensus 248 ~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~-~~~d--~~m~~~~~~g-------------~~rt~~e~~~ll~~ 311 (333)
+.|++++++|+| .+.++|...|+.... ..+. .+.. +..+....++ ...+.+++.+++++
T Consensus 128 ~~l~e~~RvLkp--~~~ile~~~p~~~~~---~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~ 202 (226)
T PRK05785 128 KVIAEFTRVSRK--QVGFIAMGKPDNVIK---RKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEK 202 (226)
T ss_pred HHHHHHHHHhcC--ceEEEEeCCCCcHHH---HHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 899999999999 355677655543210 0010 1111 1111110111 23478999999999
Q ss_pred CCCCeeEEeecCCcee-EEEEeC
Q 035738 312 AGFSGISCERAIGNLW-VMEFYK 333 (333)
Q Consensus 312 aGf~~~~~~~~~~~~~-vie~~~ 333 (333)
+| ..++......+.. +..+.|
T Consensus 203 ~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 203 YA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred Hh-CceEEEEccccEEEEEEEee
Confidence 84 7788888876654 454443
No 40
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.14 E-value=5.5e-10 Score=94.28 Aligned_cols=110 Identities=15% Similarity=0.323 Sum_probs=79.9
Q ss_pred HhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe----------------EEE
Q 035738 182 LESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM----------------WIL 238 (333)
Q Consensus 182 ~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv----------------~vL 238 (333)
+..+. ..+..+|||||||+|.++..+++++|+.+++++|+ +.+++.++++ .++ .++
T Consensus 24 ~~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~ 102 (187)
T PRK08287 24 LSKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIF 102 (187)
T ss_pred HHhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEE
Confidence 34444 66778999999999999999999999999999999 8888777542 122 222
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeE
Q 035738 239 HDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGIS 318 (333)
Q Consensus 239 h~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 318 (333)
-.........+++++.+.|+|||++++.....+ +.+++.+++++.||+.++
T Consensus 103 ~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~~~~-----------------------------~~~~~~~~l~~~g~~~~~ 153 (187)
T PRK08287 103 IGGSGGNLTAIIDWSLAHLHPGGRLVLTFILLE-----------------------------NLHSALAHLEKCGVSELD 153 (187)
T ss_pred ECCCccCHHHHHHHHHHhcCCCeEEEEEEecHh-----------------------------hHHHHHHHHHHCCCCcce
Confidence 121222235789999999999999987543111 145778899999998777
Q ss_pred Eee
Q 035738 319 CER 321 (333)
Q Consensus 319 ~~~ 321 (333)
+..
T Consensus 154 ~~~ 156 (187)
T PRK08287 154 CVQ 156 (187)
T ss_pred EEE
Confidence 543
No 41
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.14 E-value=4.4e-11 Score=92.04 Aligned_cols=77 Identities=17% Similarity=0.274 Sum_probs=62.2
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe-----------------------E-EE
Q 035738 191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM-----------------------W-IL 238 (333)
Q Consensus 191 ~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv-----------------------~-vL 238 (333)
..+|||||||+|.++..+++.+|..+++++|+ |.+++.++++ +++ . .+
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTL 81 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSG
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCcc
Confidence 57899999999999999999999999999999 8898877643 111 2 22
Q ss_pred ccCC-hhHHHHHHHHHHHhCCCCcEEEEEe
Q 035738 239 HDWN-DEHCLKLLKNCYKSIPEDGKVIAVE 267 (333)
Q Consensus 239 h~~~-~~~~~~lL~~~~~~L~pgG~l~i~e 267 (333)
|.+. .++..++|+++++.|+|||+++|.+
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 3233 2566789999999999999999875
No 42
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.08 E-value=2.7e-10 Score=96.85 Aligned_cols=123 Identities=18% Similarity=0.159 Sum_probs=89.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CCe-------------------------EEEcc
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PCM-------------------------WILHD 240 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~gv-------------------------~vLh~ 240 (333)
...+|||||||.|.++..+++.. .+++++|+ +..++.|+.+ .++ .||++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 56799999999999999999987 78999999 8899988854 111 78888
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchh-hHHHhhCCCC-----CcCCHHHHHHHHHhCCC
Q 035738 241 WNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSD-VLMMIQSPGG-----KERTRHEFMTLATGAGF 314 (333)
Q Consensus 241 ~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d-~~m~~~~~~g-----~~rt~~e~~~ll~~aGf 314 (333)
+++++ .+++.|.+.+||||.+++........ ..+...+. -..+-.++.| +...++|+..++.++||
T Consensus 137 v~dp~--~~~~~c~~lvkP~G~lf~STinrt~k------a~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~ 208 (243)
T COG2227 137 VPDPE--SFLRACAKLVKPGGILFLSTINRTLK------AYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANL 208 (243)
T ss_pred cCCHH--HHHHHHHHHcCCCcEEEEeccccCHH------HHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCc
Confidence 99887 79999999999999999888753221 01111111 0011112333 45679999999999999
Q ss_pred CeeEEeec
Q 035738 315 SGISCERA 322 (333)
Q Consensus 315 ~~~~~~~~ 322 (333)
.+.....+
T Consensus 209 ~~~~~~g~ 216 (243)
T COG2227 209 KIIDRKGL 216 (243)
T ss_pred eEEeecce
Confidence 88776544
No 43
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.05 E-value=6.5e-11 Score=89.15 Aligned_cols=67 Identities=25% Similarity=0.470 Sum_probs=50.3
Q ss_pred EEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----C--C----------------------e---EEEccCC
Q 035738 195 VDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----P--C----------------------M---WILHDWN 242 (333)
Q Consensus 195 lDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~--g----------------------v---~vLh~~~ 242 (333)
||||||+|.++..+++++|..+++++|+ +.+++.+++. . . | ++||+++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999999999999999999999999 8999888764 0 0 0 8888885
Q ss_pred hhHHHHHHHHHHHhCCCCcEE
Q 035738 243 DEHCLKLLKNCYKSIPEDGKV 263 (333)
Q Consensus 243 ~~~~~~lL~~~~~~L~pgG~l 263 (333)
+. ..+|+++++.|+|||+|
T Consensus 81 ~~--~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 DI--EAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -H--HHHHHHHTTT-TSS-EE
T ss_pred hH--HHHHHHHHHHcCCCCCC
Confidence 44 49999999999999986
No 44
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.05 E-value=2.7e-09 Score=94.35 Aligned_cols=127 Identities=13% Similarity=0.150 Sum_probs=83.6
Q ss_pred HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-C--C---------------e---
Q 035738 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-P--C---------------M--- 235 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~--g---------------v--- 235 (333)
...+++.++ ..+..+|||+|||+|.++..+.+. ..+++++|+ +.+++.+++. + . .
T Consensus 31 a~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V 107 (251)
T PRK10258 31 ADALLAMLP-QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLA 107 (251)
T ss_pred HHHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEE
Confidence 445556555 446789999999999999888764 468999999 8888876643 0 0 0
Q ss_pred ---EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhC
Q 035738 236 ---WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGA 312 (333)
Q Consensus 236 ---~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~a 312 (333)
..+|..++. ..+|++++++|+|||.+++..+....-+. ....+..+. ...+.....+.++|.+++...
T Consensus 108 ~s~~~l~~~~d~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~e-----l~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~ 178 (251)
T PRK10258 108 WSNLAVQWCGNL--STALRELYRVVRPGGVVAFTTLVQGSLPE-----LHQAWQAVD--ERPHANRFLPPDAIEQALNGW 178 (251)
T ss_pred EECchhhhcCCH--HHHHHHHHHHcCCCeEEEEEeCCCCchHH-----HHHHHHHhc--cCCccccCCCHHHHHHHHHhC
Confidence 344544544 48999999999999999998775432110 000010000 000123456899999999998
Q ss_pred CCCe
Q 035738 313 GFSG 316 (333)
Q Consensus 313 Gf~~ 316 (333)
|+..
T Consensus 179 ~~~~ 182 (251)
T PRK10258 179 RYQH 182 (251)
T ss_pred Ccee
Confidence 8763
No 45
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.04 E-value=1.2e-09 Score=94.70 Aligned_cols=125 Identities=10% Similarity=0.020 Sum_probs=80.9
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe--------------------EEEcc
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM--------------------WILHD 240 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv--------------------~vLh~ 240 (333)
....+|||||||+|.++..+++. ..+++++|+ +.+++.+++. .++ .++++
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~ 131 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIH 131 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHh
Confidence 45789999999999999999875 458999999 8888776542 011 45667
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHh--hCCCCCcCCHHHHHHHHHhCCCCeeE
Q 035738 241 WNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMI--QSPGGKERTRHEFMTLATGAGFSGIS 318 (333)
Q Consensus 241 ~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~--~~~~g~~rt~~e~~~ll~~aGf~~~~ 318 (333)
++++...++++++.+.+++++.+.+. +... ... ....+.-.+.. ....-..++.+++.++++++||++++
T Consensus 132 ~~~~~~~~~l~~i~~~~~~~~~i~~~----~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~ 203 (219)
T TIGR02021 132 YPASDMAKALGHLASLTKERVIFTFA----PKTA---WLA-FLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVR 203 (219)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEEC----CCch---HHH-HHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeee
Confidence 77777778999999988866444332 1110 000 00000000000 00012245889999999999999998
Q ss_pred EeecC
Q 035738 319 CERAI 323 (333)
Q Consensus 319 ~~~~~ 323 (333)
+....
T Consensus 204 ~~~~~ 208 (219)
T TIGR02021 204 EGLVS 208 (219)
T ss_pred eeccc
Confidence 87665
No 46
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.03 E-value=2.1e-09 Score=96.99 Aligned_cols=111 Identities=15% Similarity=0.091 Sum_probs=80.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----CC------------------e----EEEccC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----PC------------------M----WILHDW 241 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~g------------------v----~vLh~~ 241 (333)
...+|||||||+|..+..+++. ..+++++|. +.+++.+++. .+ + .+||++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMFL 197 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhhC
Confidence 4569999999999999999885 478999999 7777765431 00 1 578888
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEe
Q 035738 242 NDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCE 320 (333)
Q Consensus 242 ~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 320 (333)
+++....+++++.++|+|||++++++....+....+ .+-...++.+|++++++. |++++..
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~----------------~p~~~~~~~~el~~~~~~--~~i~~~~ 258 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCP----------------MPFSFTFKEGELKDYYQD--WEIVKYN 258 (287)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCC----------------CCCCcccCHHHHHHHhCC--CEEEEEe
Confidence 877888999999999999999888776543321100 011223568899999954 8887764
No 47
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.03 E-value=1.7e-09 Score=104.60 Aligned_cols=123 Identities=16% Similarity=0.187 Sum_probs=89.1
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----CC-------------------
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----PC------------------- 234 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~g------------------- 234 (333)
..+++.++ ..+..+|||||||+|.++..+++.+. +++++|+ +.+++.++.. ++
T Consensus 27 ~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 103 (475)
T PLN02336 27 PEILSLLP-PYEGKSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGS 103 (475)
T ss_pred hHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCC
Confidence 45555555 44567999999999999999998754 7899999 7887654311 11
Q ss_pred --e----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHH
Q 035738 235 --M----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTL 308 (333)
Q Consensus 235 --v----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~l 308 (333)
+ .++|++++++..++|+++++.|+|||++++.|.+....... . . . ......++..+|.++
T Consensus 104 fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~---~---~------~--~~~~~~~~~~~~~~~ 169 (475)
T PLN02336 104 VDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDS---K---R------K--NNPTHYREPRFYTKV 169 (475)
T ss_pred EEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcc---c---c------c--CCCCeecChHHHHHH
Confidence 0 67788888878899999999999999999999865432110 0 0 0 011223568899999
Q ss_pred HHhCCCCeeE
Q 035738 309 ATGAGFSGIS 318 (333)
Q Consensus 309 l~~aGf~~~~ 318 (333)
+.++||....
T Consensus 170 f~~~~~~~~~ 179 (475)
T PLN02336 170 FKECHTRDED 179 (475)
T ss_pred HHHheeccCC
Confidence 9999997663
No 48
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.03 E-value=8.2e-11 Score=95.91 Aligned_cols=118 Identities=25% Similarity=0.317 Sum_probs=78.4
Q ss_pred CCCeEEEEcCCccHHHHHHH-HHCCCCeEEEeec-hhHhhhCCCC------CCe------------------------EE
Q 035738 190 NIKQLVDVGGGIGVTLQAIT-TKYPYIKGINFDL-PHVIEHVPPH------PCM------------------------WI 237 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~~------~gv------------------------~v 237 (333)
+..+|||+|||+|.++..++ +.+|+.+++++|+ +.+++.+++. +++ .+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~ 82 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV 82 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence 56799999999999999999 5688999999999 8899887651 111 33
Q ss_pred EccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCC
Q 035738 238 LHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAG 313 (333)
Q Consensus 238 Lh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aG 313 (333)
+|++++.. .+|+++.+.|+|+|.+++.+......-................+ ...+. +.++|..+|++||
T Consensus 83 l~~~~~~~--~~l~~~~~~lk~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~ag 152 (152)
T PF13847_consen 83 LHHFPDPE--KVLKNIIRLLKPGGILIISDPNHNDELPEQLEELMNLYSEVWSM--IYIGN--DKEEWKYILEEAG 152 (152)
T ss_dssp GGGTSHHH--HHHHHHHHHEEEEEEEEEEEEEHSHHHHHHHHHHHHHHHHHHHH--CC-----CCCGHHHHHHHTT
T ss_pred hhhccCHH--HHHHHHHHHcCCCcEEEEEECChHHHHHHHHHHHHHHHHHHhhh--hhccc--CHHHHHHHHHhcC
Confidence 45666664 89999999999999999999973221000000000000111111 11122 6789999999998
No 49
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.02 E-value=3.2e-09 Score=92.84 Aligned_cols=117 Identities=15% Similarity=0.206 Sum_probs=83.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC--CC-------------------e----EEEccCCh
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH--PC-------------------M----WILHDWND 243 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~g-------------------v----~vLh~~~~ 243 (333)
...+|||||||+|.++..+++.+|..+++++|+ +.+++.+++. ++ + .++|+..+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 457899999999999999999999999999999 7777555432 01 1 55666655
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEee
Q 035738 244 EHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCER 321 (333)
Q Consensus 244 ~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 321 (333)
.. ++|++++++|+|||.+++.++..... ..+.... .. ......+.++|.++++++ |..+.+..
T Consensus 114 ~~--~~l~~~~~~L~~~G~l~~~~~~~~~~---------~~~~~~~--~~-~~~~~~~~~~~~~~l~~~-f~~~~~~~ 176 (240)
T TIGR02072 114 LS--QALSELARVLKPGGLLAFSTFGPGTL---------HELRQSF--GQ-HGLRYLSLDELKALLKNS-FELLTLEE 176 (240)
T ss_pred HH--HHHHHHHHHcCCCcEEEEEeCCccCH---------HHHHHHH--HH-hccCCCCHHHHHHHHHHh-cCCcEEEE
Confidence 44 89999999999999999987643221 0011111 10 134566889999999998 88766543
No 50
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.02 E-value=3.9e-09 Score=93.23 Aligned_cols=111 Identities=18% Similarity=0.181 Sum_probs=83.2
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CCe--------------EEEccCChhHHHHHH
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PCM--------------WILHDWNDEHCLKLL 250 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~gv--------------~vLh~~~~~~~~~lL 250 (333)
.+..+|||||||+|.++..+++..+ .+++++|+ |.+++.++++ .++ .|+.+...+....++
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvani~~~~~~~l~ 196 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVANILANPLLELA 196 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEcCcHHHHHHHH
Confidence 4678999999999999887766544 37999999 8888877653 111 344444444556899
Q ss_pred HHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeecCCceeEE
Q 035738 251 KNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVM 329 (333)
Q Consensus 251 ~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi 329 (333)
+++.+.|+|||++++...... ..+++.+.+++.||+++++...+.+..++
T Consensus 197 ~~~~~~LkpgG~lilsgi~~~-----------------------------~~~~v~~~l~~~Gf~~~~~~~~~~W~~~~ 246 (250)
T PRK00517 197 PDLARLLKPGGRLILSGILEE-----------------------------QADEVLEAYEEAGFTLDEVLERGEWVALV 246 (250)
T ss_pred HHHHHhcCCCcEEEEEECcHh-----------------------------hHHHHHHHHHHCCCEEEEEEEeCCEEEEE
Confidence 999999999999998754211 25678899999999999988887776654
No 51
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.97 E-value=7.3e-09 Score=92.08 Aligned_cols=81 Identities=15% Similarity=0.197 Sum_probs=65.3
Q ss_pred CCCCCeEEEEcCCccH----HHHHHHHHCC-----CCeEEEeec-hhHhhhCCCC----------C--------------
Q 035738 188 FDNIKQLVDVGGGIGV----TLQAITTKYP-----YIKGINFDL-PHVIEHVPPH----------P-------------- 233 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~----------~-------------- 233 (333)
.....+|+|+|||||. +++.+++.++ +.++++.|+ +.+++.|++. |
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 3456899999999996 5666666655 578999999 8899877651 0
Q ss_pred ---------Ce-----------------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738 234 ---------CM-----------------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 234 ---------gv-----------------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
.| ++||+++++...+++++++++|+|||++++-..
T Consensus 177 ~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 177 YRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 01 889999988888999999999999999998654
No 52
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.96 E-value=4.1e-09 Score=92.97 Aligned_cols=134 Identities=16% Similarity=0.174 Sum_probs=90.0
Q ss_pred HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhC------C--CC-----C-Ce-------
Q 035738 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHV------P--PH-----P-CM------- 235 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a------~--~~-----~-gv------- 235 (333)
+..+...++.+ .+++|||||||+|.++.+++.+.+. .++++|- +....+. . .. | ++
T Consensus 104 W~rl~p~l~~L-~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~ 181 (315)
T PF08003_consen 104 WDRLLPHLPDL-KGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLG 181 (315)
T ss_pred HHHHHhhhCCc-CCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccC
Confidence 34455555423 5679999999999999999998775 5888886 4332221 1 00 1 11
Q ss_pred --------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCC-CCcCCHHHHH
Q 035738 236 --------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPG-GKERTRHEFM 306 (333)
Q Consensus 236 --------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~-g~~rt~~e~~ 306 (333)
-||++..++- ..|+++++.|+|||.+++-..+.+.+........ -....| .| -..+|...+.
T Consensus 182 ~FDtVF~MGVLYHrr~Pl--~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~----~rYa~m---~nv~FiPs~~~L~ 252 (315)
T PF08003_consen 182 AFDTVFSMGVLYHRRSPL--DHLKQLKDSLRPGGELVLETLVIDGDENTVLVPE----DRYAKM---RNVWFIPSVAALK 252 (315)
T ss_pred CcCEEEEeeehhccCCHH--HHHHHHHHhhCCCCEEEEEEeeecCCCceEEccC----CcccCC---CceEEeCCHHHHH
Confidence 6777777664 8999999999999998887777765432211000 000111 12 2356899999
Q ss_pred HHHHhCCCCeeEEeec
Q 035738 307 TLATGAGFSGISCERA 322 (333)
Q Consensus 307 ~ll~~aGf~~~~~~~~ 322 (333)
.||+++||+.+++...
T Consensus 253 ~wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 253 NWLERAGFKDVRCVDV 268 (315)
T ss_pred HHHHHcCCceEEEecC
Confidence 9999999999998765
No 53
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.94 E-value=7e-09 Score=81.03 Aligned_cols=85 Identities=12% Similarity=0.224 Sum_probs=63.9
Q ss_pred HHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe------------------
Q 035738 181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM------------------ 235 (333)
Q Consensus 181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv------------------ 235 (333)
+++.+. .....+|||+|||+|.++..+++++|..+++++|. +.+++.++++ .++
T Consensus 11 ~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (124)
T TIGR02469 11 TLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEP 89 (124)
T ss_pred HHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCC
Confidence 444444 55567999999999999999999999999999999 7777765432 111
Q ss_pred -EEEccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 035738 236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIAV 266 (333)
Q Consensus 236 -~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~ 266 (333)
.++.........++++++++.|+|||++++.
T Consensus 90 D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 90 DRVFIGGSGGLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred CEEEECCcchhHHHHHHHHHHHcCCCCEEEEE
Confidence 3333333344568999999999999998874
No 54
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.94 E-value=2.1e-09 Score=92.19 Aligned_cols=122 Identities=15% Similarity=0.203 Sum_probs=88.1
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----C----C----e--------------------EE
Q 035738 191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----P----C----M--------------------WI 237 (333)
Q Consensus 191 ~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~----g----v--------------------~v 237 (333)
+.+|||||||+|.++..|++.. .+++++|+ +.+++.|++. | + + .+
T Consensus 90 g~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 4789999999999999999987 56899999 8899988764 1 1 0 67
Q ss_pred EccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccch-hhHHHhhCCCC-----CcCCHHHHHHHHHh
Q 035738 238 LHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDS-DVLMMIQSPGG-----KERTRHEFMTLATG 311 (333)
Q Consensus 238 Lh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~-d~~m~~~~~~g-----~~rt~~e~~~ll~~ 311 (333)
|++..|++ .+++.+.+.|+|+|+++|......-.... ...++ +.... ..|.| +..++++...+++.
T Consensus 168 leHV~dp~--~~l~~l~~~lkP~G~lfittinrt~lS~~-----~~i~~~E~vl~-ivp~Gth~~ekfi~p~e~~~~l~~ 239 (282)
T KOG1270|consen 168 LEHVKDPQ--EFLNCLSALLKPNGRLFITTINRTILSFA-----GTIFLAEIVLR-IVPKGTHTWEKFINPEELTSILNA 239 (282)
T ss_pred HHHHhCHH--HHHHHHHHHhCCCCceEeeehhhhHHHhh-----ccccHHHHHHH-hcCCCCcCHHHcCCHHHHHHHHHh
Confidence 77777665 89999999999999999988754321100 01111 22222 12333 45689999999999
Q ss_pred CCCCeeEEeec
Q 035738 312 AGFSGISCERA 322 (333)
Q Consensus 312 aGf~~~~~~~~ 322 (333)
+++++..+.-.
T Consensus 240 ~~~~v~~v~G~ 250 (282)
T KOG1270|consen 240 NGAQVNDVVGE 250 (282)
T ss_pred cCcchhhhhcc
Confidence 99987776543
No 55
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.93 E-value=1.7e-08 Score=84.57 Aligned_cols=113 Identities=15% Similarity=0.171 Sum_probs=83.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----CCe----------------EEEcc-----CC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----PCM----------------WILHD-----WN 242 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~gv----------------~vLh~-----~~ 242 (333)
+..+|||+|||+|.++..+.+..+ +++++|+ |.+++.++++ ..+ .|+.+ .+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLE 96 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCc
Confidence 457899999999999999999876 8999999 8888776542 011 22211 11
Q ss_pred hh-------------------HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHH
Q 035738 243 DE-------------------HCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRH 303 (333)
Q Consensus 243 ~~-------------------~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~ 303 (333)
++ ...++|+++.+.|+|||++++++.... ...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~-----------------------------~~~ 147 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN-----------------------------GEP 147 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC-----------------------------ChH
Confidence 10 134789999999999999999875321 146
Q ss_pred HHHHHHHhCCCCeeEEeecCCceeEEEEeC
Q 035738 304 EFMTLATGAGFSGISCERAIGNLWVMEFYK 333 (333)
Q Consensus 304 e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 333 (333)
++.+++++.||....+...+.++--+.++|
T Consensus 148 ~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~ 177 (179)
T TIGR00537 148 DTFDKLDERGFRYEIVAERGLFFEELFAIK 177 (179)
T ss_pred HHHHHHHhCCCeEEEEEEeecCceEEEEEE
Confidence 778999999999888888887777666664
No 56
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.92 E-value=6.1e-10 Score=82.58 Aligned_cols=68 Identities=18% Similarity=0.346 Sum_probs=55.0
Q ss_pred EEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CC--------------------e---EEEccCChhHHH
Q 035738 195 VDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PC--------------------M---WILHDWNDEHCL 247 (333)
Q Consensus 195 lDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~g--------------------v---~vLh~~~~~~~~ 247 (333)
||+|||+|..+..+.++ +..+++++|. +.+++.+++. .+ | .++|+++ +..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~--~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLE--DPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSS--HHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeecc--CHH
Confidence 79999999999999999 8899999999 7777776542 11 0 6667774 445
Q ss_pred HHHHHHHHhCCCCcEEEE
Q 035738 248 KLLKNCYKSIPEDGKVIA 265 (333)
Q Consensus 248 ~lL~~~~~~L~pgG~l~i 265 (333)
+++++++++|||||+++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999986
No 57
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=98.90 E-value=1.4e-09 Score=70.23 Aligned_cols=51 Identities=59% Similarity=0.835 Sum_probs=43.0
Q ss_pred HHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHh
Q 035738 27 MAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLA 78 (333)
Q Consensus 27 ~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~ 78 (333)
++|++|++|||||.|+++| +++.|++||+.++..++|.++..++|+||+|+
T Consensus 1 MaLk~aveLgI~dii~~~g-~~~ls~~eia~~l~~~~p~~~~~L~RimR~L~ 51 (51)
T PF08100_consen 1 MALKCAVELGIPDIIHNAG-GGPLSLSEIAARLPTSNPSAPPMLDRIMRLLV 51 (51)
T ss_dssp HHHHHHHHTTHHHHHHHHT-TS-BEHHHHHHTSTCT-TTHHHHHHHHHHHHH
T ss_pred CcHHHHHHcCcHHHHHHcC-CCCCCHHHHHHHcCCCCcchHHHHHHHHHHhC
Confidence 5899999999999999986 46999999999999445557788999999985
No 58
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.89 E-value=1.1e-08 Score=89.14 Aligned_cols=123 Identities=14% Similarity=0.135 Sum_probs=80.9
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----C--Ce--------------------EEEc
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----P--CM--------------------WILH 239 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~--gv--------------------~vLh 239 (333)
..+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++. . .+ .++|
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~ 138 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLI 138 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhh
Confidence 34567999999999999999988754 5999999 7887766542 0 11 5567
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHh-----hCCCCCcCCHHHHHHHHHhCCC
Q 035738 240 DWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMI-----QSPGGKERTRHEFMTLATGAGF 314 (333)
Q Consensus 240 ~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~-----~~~~g~~rt~~e~~~ll~~aGf 314 (333)
+++++....+++++.+.+++++ ++.... ..+. .......... ........+.++|.++++++||
T Consensus 139 ~~~~~~~~~~l~~l~~~~~~~~-~i~~~~---~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 207 (230)
T PRK07580 139 HYPQEDAARMLAHLASLTRGSL-IFTFAP---YTPL-------LALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGF 207 (230)
T ss_pred cCCHHHHHHHHHHHHhhcCCeE-EEEECC---ccHH-------HHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCC
Confidence 7888888899999998765443 333221 1100 0001100000 0012334578999999999999
Q ss_pred CeeEEeecC
Q 035738 315 SGISCERAI 323 (333)
Q Consensus 315 ~~~~~~~~~ 323 (333)
++.++.+..
T Consensus 208 ~~~~~~~~~ 216 (230)
T PRK07580 208 KVVRTERIS 216 (230)
T ss_pred ceEeeeecc
Confidence 999988765
No 59
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.89 E-value=1.7e-08 Score=93.47 Aligned_cols=87 Identities=18% Similarity=0.264 Sum_probs=66.4
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----C----Ce--------------
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----P----CM-------------- 235 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~----gv-------------- 235 (333)
-+++.++ .....+|||+|||+|..+..+++++|..+++++|. +.+++.++++ + .+
T Consensus 219 llL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~ 297 (378)
T PRK15001 219 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 297 (378)
T ss_pred HHHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCC
Confidence 4555565 33446999999999999999999999999999999 6787776532 1 11
Q ss_pred ---EEEc--------cCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 035738 236 ---WILH--------DWNDEHCLKLLKNCYKSIPEDGKVIAVE 267 (333)
Q Consensus 236 ---~vLh--------~~~~~~~~~lL~~~~~~L~pgG~l~i~e 267 (333)
.|+. ..++..+.++++.+++.|+|||.++++-
T Consensus 298 ~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 298 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 2222 2344556789999999999999999984
No 60
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.89 E-value=8.2e-09 Score=88.18 Aligned_cols=83 Identities=17% Similarity=0.361 Sum_probs=68.5
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-CCe----------------------EEEccCCh
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-PCM----------------------WILHDWND 243 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~gv----------------------~vLh~~~~ 243 (333)
..+..+|||||||+|..+..+++..|..+++++|+ +.+++.|++. +++ .+||++++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence 34677899999999999999999889999999999 8899988753 211 67888887
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 035738 244 EHCLKLLKNCYKSIPEDGKVIAVELMLPE 272 (333)
Q Consensus 244 ~~~~~lL~~~~~~L~pgG~l~i~e~~~~~ 272 (333)
+...++++++++++ ++.++|.|...+.
T Consensus 121 ~~~~~~l~el~r~~--~~~v~i~e~~~~~ 147 (204)
T TIGR03587 121 DNLPTAYRELYRCS--NRYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence 77889999999987 5688888886554
No 61
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.88 E-value=2.9e-09 Score=89.74 Aligned_cols=119 Identities=19% Similarity=0.286 Sum_probs=86.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----CCe------------------------EEEc
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----PCM------------------------WILH 239 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~gv------------------------~vLh 239 (333)
+..+.||.|+|.|..+..++...- -++-.+|. +..++.|+++ +.+ +++-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f-~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVF-DEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHhc-CEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 568999999999999998765442 24666676 7788877632 111 8899
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEE
Q 035738 240 DWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISC 319 (333)
Q Consensus 240 ~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~ 319 (333)
+++|++.++.|++|+++|+|+|.|+|-|.+...+. ..+|-. -+.-.|+.+.|+++|++||+++++.
T Consensus 134 hLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~---------~~~D~~-----DsSvTRs~~~~~~lF~~AGl~~v~~ 199 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF---------DEFDEE-----DSSVTRSDEHFRELFKQAGLRLVKE 199 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE---------EEEETT-----TTEEEEEHHHHHHHHHHCT-EEEEE
T ss_pred cCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC---------cccCCc-----cCeeecCHHHHHHHHHHcCCEEEEe
Confidence 99999999999999999999999999999876531 112211 2445689999999999999999987
Q ss_pred eecC
Q 035738 320 ERAI 323 (333)
Q Consensus 320 ~~~~ 323 (333)
..-.
T Consensus 200 ~~Q~ 203 (218)
T PF05891_consen 200 EKQK 203 (218)
T ss_dssp EE-T
T ss_pred cccc
Confidence 6543
No 62
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.88 E-value=9.8e-09 Score=84.86 Aligned_cols=156 Identities=20% Similarity=0.188 Sum_probs=94.4
Q ss_pred HHHHHHHHhhhhhhhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CC-
Q 035738 163 NKHFNTVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PC- 234 (333)
Q Consensus 163 ~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~g- 234 (333)
...|+..|..+.......+-. +-+.+....||+||||||..-.. ..--|..++|.+|. |.+-+.+.+. +.
T Consensus 50 t~~yne~~~~ykrelFs~i~~-~~gk~~K~~vLEvgcGtG~Nfkf-y~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~ 127 (252)
T KOG4300|consen 50 TSIYNEIADSYKRELFSGIYY-FLGKSGKGDVLEVGCGTGANFKF-YPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQV 127 (252)
T ss_pred HHHHHHHHHHHHHHHHhhhHH-HhcccCccceEEecccCCCCccc-ccCCCCceEEEeCCcHHHHHHHHHHHhhccCcce
Confidence 445667676665443333322 22244556789999999986441 12235677899998 7776554321 11
Q ss_pred -------------e-----------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHH
Q 035738 235 -------------M-----------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLM 290 (333)
Q Consensus 235 -------------v-----------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m 290 (333)
+ .+|+ +-++.++.|+++++.|+|||+++++|....+...- ...+....+-..
T Consensus 128 ~~fvva~ge~l~~l~d~s~DtVV~TlvLC--Sve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~--n~i~q~v~ep~~ 203 (252)
T KOG4300|consen 128 ERFVVADGENLPQLADGSYDTVVCTLVLC--SVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFW--NRILQQVAEPLW 203 (252)
T ss_pred EEEEeechhcCcccccCCeeeEEEEEEEe--ccCCHHHHHHHHHHhcCCCcEEEEEecccccchHH--HHHHHHHhchhh
Confidence 0 4555 44455699999999999999999999987654211 011111112111
Q ss_pred HhhCCCCCcCCHHHHHHHHHhCCCCeeEEeecCCce
Q 035738 291 MIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNL 326 (333)
Q Consensus 291 ~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~ 326 (333)
.. ...|-..|++.|+ .|++|-|+..+......+.
T Consensus 204 ~~-~~dGC~ltrd~~e-~Leda~f~~~~~kr~~~~t 237 (252)
T KOG4300|consen 204 HL-ESDGCVLTRDTGE-LLEDAEFSIDSCKRFNFGT 237 (252)
T ss_pred he-eccceEEehhHHH-HhhhcccccchhhcccCCc
Confidence 11 1356666776665 5588999998887766443
No 63
>PTZ00146 fibrillarin; Provisional
Probab=98.87 E-value=9.4e-08 Score=84.90 Aligned_cols=116 Identities=11% Similarity=0.033 Sum_probs=76.9
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hh----HhhhCCCCCCe---------------------EEEcc
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PH----VIEHVPPHPCM---------------------WILHD 240 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~----~~~~a~~~~gv---------------------~vLh~ 240 (333)
+.+..+|||+|||+|.++..+++.. +.-+++.+|+ +. +++.++..+++ .|+++
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 5677899999999999999999876 4568999998 53 45555432221 66666
Q ss_pred CChhH-HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEE
Q 035738 241 WNDEH-CLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISC 319 (333)
Q Consensus 241 ~~~~~-~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~ 319 (333)
..+++ ...++.++.+.|||||+++|....... +.. +.-.++-.+|. ++|+++||+.+++
T Consensus 210 va~pdq~~il~~na~r~LKpGG~~vI~ika~~i--------------d~g-----~~pe~~f~~ev-~~L~~~GF~~~e~ 269 (293)
T PTZ00146 210 VAQPDQARIVALNAQYFLKNGGHFIISIKANCI--------------DST-----AKPEVVFASEV-QKLKKEGLKPKEQ 269 (293)
T ss_pred CCCcchHHHHHHHHHHhccCCCEEEEEEecccc--------------ccC-----CCHHHHHHHHH-HHHHHcCCceEEE
Confidence 55443 335566899999999999993221110 100 00011112344 8899999999988
Q ss_pred eecC
Q 035738 320 ERAI 323 (333)
Q Consensus 320 ~~~~ 323 (333)
+...
T Consensus 270 v~L~ 273 (293)
T PTZ00146 270 LTLE 273 (293)
T ss_pred EecC
Confidence 8765
No 64
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.85 E-value=8.4e-09 Score=87.56 Aligned_cols=79 Identities=11% Similarity=0.176 Sum_probs=61.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe---------------------EEEccC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM---------------------WILHDW 241 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv---------------------~vLh~~ 241 (333)
...++||||||+|.++..+++++|+.+++++|+ +.+++.+++. .++ .++.++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 456899999999999999999999999999999 7787766431 111 444555
Q ss_pred ChhH-----------HHHHHHHHHHhCCCCcEEEEEee
Q 035738 242 NDEH-----------CLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 242 ~~~~-----------~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
+++. ...++++++++|+|||.|++...
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 4431 13699999999999999988654
No 65
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.84 E-value=1.4e-08 Score=88.83 Aligned_cols=128 Identities=17% Similarity=0.113 Sum_probs=79.5
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------------------C-------Ce----EE
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------------------P-------CM----WI 237 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------------~-------gv----~v 237 (333)
..+..+|||||||+|.++..+.+. ..+++++|+ +..++.++++ + ++ .+
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~ 123 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEM 123 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhH
Confidence 345779999999999999888875 467899998 6776655421 0 01 33
Q ss_pred EccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhh-C-CCCCcCCHHHHHHHHHhCCCC
Q 035738 238 LHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQ-S-PGGKERTRHEFMTLATGAGFS 315 (333)
Q Consensus 238 Lh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~-~-~~g~~rt~~e~~~ll~~aGf~ 315 (333)
+++.++.. .+|+.+.+.|+|||++++....... ............-...... + ......+.++|.++|+++||+
T Consensus 124 l~~~~~~~--~~l~~~~~~L~~gG~l~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 199 (233)
T PRK05134 124 LEHVPDPA--SFVRACAKLVKPGGLVFFSTLNRNL--KSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLE 199 (233)
T ss_pred hhccCCHH--HHHHHHHHHcCCCcEEEEEecCCCh--HHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCe
Confidence 45555544 7999999999999999887652110 0000000000000000000 0 012345789999999999999
Q ss_pred eeEEee
Q 035738 316 GISCER 321 (333)
Q Consensus 316 ~~~~~~ 321 (333)
+++...
T Consensus 200 ~v~~~~ 205 (233)
T PRK05134 200 VQDITG 205 (233)
T ss_pred Eeeeee
Confidence 887754
No 66
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.84 E-value=1.3e-09 Score=82.35 Aligned_cols=68 Identities=25% Similarity=0.483 Sum_probs=54.8
Q ss_pred EEEEcCCccHHHHHHHHHC---CCCeEEEeec-hhHhhhCCCC-----CCe------------------------EEEcc
Q 035738 194 LVDVGGGIGVTLQAITTKY---PYIKGINFDL-PHVIEHVPPH-----PCM------------------------WILHD 240 (333)
Q Consensus 194 vlDVGgG~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~-----~gv------------------------~vLh~ 240 (333)
|||+|||+|..+..+++.+ |+.+++++|+ +.+++.++++ +.+ .++|+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999987 5689999999 8898877643 111 23778
Q ss_pred CChhHHHHHHHHHHHhCCCCc
Q 035738 241 WNDEHCLKLLKNCYKSIPEDG 261 (333)
Q Consensus 241 ~~~~~~~~lL~~~~~~L~pgG 261 (333)
+++++..++|+++++.|+|||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999997
No 67
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.80 E-value=2.5e-08 Score=83.86 Aligned_cols=102 Identities=16% Similarity=0.138 Sum_probs=74.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe-----------------EEEccCChhH
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM-----------------WILHDWNDEH 245 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv-----------------~vLh~~~~~~ 245 (333)
...+|||||||+|..+..++.+.|+.+++++|. +.+++.++++ .++ .|+.+. -..
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~-~~~ 123 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRA-VAS 123 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEcc-ccC
Confidence 478999999999999999999999999999999 8888777642 112 222111 122
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeec
Q 035738 246 CLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERA 322 (333)
Q Consensus 246 ~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 322 (333)
...+++++++.|+|||++++++... ...++.++.+..|+.+.+++..
T Consensus 124 ~~~~l~~~~~~LkpGG~lv~~~~~~------------------------------~~~~l~~~~~~~~~~~~~~~~~ 170 (187)
T PRK00107 124 LSDLVELCLPLLKPGGRFLALKGRD------------------------------PEEEIAELPKALGGKVEEVIEL 170 (187)
T ss_pred HHHHHHHHHHhcCCCeEEEEEeCCC------------------------------hHHHHHHHHHhcCceEeeeEEE
Confidence 3589999999999999999885421 1334566666678887776544
No 68
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.77 E-value=7.8e-08 Score=80.56 Aligned_cols=76 Identities=16% Similarity=0.138 Sum_probs=56.4
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe-----------------EEEccCChhHH
Q 035738 191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM-----------------WILHDWNDEHC 246 (333)
Q Consensus 191 ~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv-----------------~vLh~~~~~~~ 246 (333)
+.+|||||||+|..+..++..+|+.+++++|. +.+++.+++. .++ .|+.+. -...
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~~ 121 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LASL 121 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhCH
Confidence 67999999999999999999999999999999 7776655421 122 111111 1123
Q ss_pred HHHHHHHHHhCCCCcEEEEEe
Q 035738 247 LKLLKNCYKSIPEDGKVIAVE 267 (333)
Q Consensus 247 ~~lL~~~~~~L~pgG~l~i~e 267 (333)
..+++.+++.|+|||++++..
T Consensus 122 ~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 122 NVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred HHHHHHHHHhcCCCCEEEEEc
Confidence 468899999999999999763
No 69
>PLN03075 nicotianamine synthase; Provisional
Probab=98.77 E-value=2.1e-08 Score=89.29 Aligned_cols=79 Identities=18% Similarity=0.180 Sum_probs=62.3
Q ss_pred CCCCeEEEEcCCccHHHH-HH-HHHCCCCeEEEeec-hhHhhhCCCC----CC----e----------------------
Q 035738 189 DNIKQLVDVGGGIGVTLQ-AI-TTKYPYIKGINFDL-PHVIEHVPPH----PC----M---------------------- 235 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~-~l-~~~~p~~~~~~~D~-~~~~~~a~~~----~g----v---------------------- 235 (333)
.++.+|+|||||.|-++. .+ ...+|+.+++++|. +.+++.|++. ++ +
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 378999999999774433 33 35689999999999 8888776642 11 1
Q ss_pred EEEccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 035738 236 WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVE 267 (333)
Q Consensus 236 ~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e 267 (333)
.+||+|+.++-.++|+++++.|+|||.+++--
T Consensus 202 ~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 202 AALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred ecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 88899976666799999999999999988865
No 70
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.76 E-value=4.5e-08 Score=80.50 Aligned_cols=88 Identities=16% Similarity=0.231 Sum_probs=68.5
Q ss_pred HHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe--------EEEccCCh--
Q 035738 181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM--------WILHDWND-- 243 (333)
Q Consensus 181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv--------~vLh~~~~-- 243 (333)
.++.+. ..+..+++|||||||..+.+++..+|+.+++.+|. +.+++..+++ +++ ..|.+.++
T Consensus 26 ~ls~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~d 104 (187)
T COG2242 26 TLSKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPD 104 (187)
T ss_pred HHHhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCC
Confidence 345565 77888999999999999999999999999999998 7787776654 343 44444431
Q ss_pred -------hHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738 244 -------EHCLKLLKNCYKSIPEDGKVIAVELM 269 (333)
Q Consensus 244 -------~~~~~lL~~~~~~L~pgG~l~i~e~~ 269 (333)
.....+|+.+...|+|||++++.-..
T Consensus 105 aiFIGGg~~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 105 AIFIGGGGNIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred EEEECCCCCHHHHHHHHHHHcCcCCeEEEEeec
Confidence 22458999999999999998876553
No 71
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=2.8e-07 Score=81.58 Aligned_cols=89 Identities=18% Similarity=0.225 Sum_probs=70.0
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CC--e--------------
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PC--M-------------- 235 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~g--v-------------- 235 (333)
+-+++.++ .+...+|+|+|||.|-.+..+++.+|+.+++.+|. ...++.++++ .+ +
T Consensus 148 ~lLl~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd 226 (300)
T COG2813 148 RLLLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKFD 226 (300)
T ss_pred HHHHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccccccc
Confidence 45667777 55455999999999999999999999999999999 6788888764 12 1
Q ss_pred EEEccCC--------hhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738 236 WILHDWN--------DEHCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 236 ~vLh~~~--------~~~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
.|+.+-| +.-+.++++.+.+.|++||.|.|+=.
T Consensus 227 ~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 227 LIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred EEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 4444433 23345899999999999999988866
No 72
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.73 E-value=3.6e-08 Score=84.19 Aligned_cols=79 Identities=14% Similarity=0.167 Sum_probs=59.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe---------------------EEEccC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM---------------------WILHDW 241 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv---------------------~vLh~~ 241 (333)
...+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++. +++ .++..+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 567999999999999999999999999999999 8888766531 121 232222
Q ss_pred Chh-----------HHHHHHHHHHHhCCCCcEEEEEee
Q 035738 242 NDE-----------HCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 242 ~~~-----------~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
+++ ....+|+++.++|+|||.+++...
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 221 124789999999999999998754
No 73
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.73 E-value=2.8e-08 Score=90.16 Aligned_cols=119 Identities=12% Similarity=0.057 Sum_probs=75.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---C------------------------Ce----EE
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---P------------------------CM----WI 237 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~------------------------gv----~v 237 (333)
+..+|||||||+|.++..+++. +.+++++|+ +.+++.++++ . ++ .+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 4579999999999999999986 468999999 7887665432 0 00 56
Q ss_pred EccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCC------CCcCCHHHHHHHHHh
Q 035738 238 LHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPG------GKERTRHEFMTLATG 311 (333)
Q Consensus 238 Lh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~------g~~rt~~e~~~ll~~ 311 (333)
||+++++....+++.+.+ +.+++. +|.. .+... . ...+... ....++ ....+.++++++|++
T Consensus 222 L~H~p~~~~~~ll~~l~~-l~~g~l-iIs~--~p~~~----~---~~~l~~~-g~~~~g~~~~~r~y~~s~eel~~lL~~ 289 (315)
T PLN02585 222 LIHYPQDKADGMIAHLAS-LAEKRL-IISF--APKTL----Y---YDILKRI-GELFPGPSKATRAYLHAEADVERALKK 289 (315)
T ss_pred EEecCHHHHHHHHHHHHh-hcCCEE-EEEe--CCcch----H---HHHHHHH-HhhcCCCCcCceeeeCCHHHHHHHHHH
Confidence 777888777788888875 455444 4422 12110 0 0000000 000111 113378999999999
Q ss_pred CCCCeeEEeec
Q 035738 312 AGFSGISCERA 322 (333)
Q Consensus 312 aGf~~~~~~~~ 322 (333)
+||++.+..-.
T Consensus 290 AGf~v~~~~~~ 300 (315)
T PLN02585 290 AGWKVARREMT 300 (315)
T ss_pred CCCEEEEEEEe
Confidence 99998766544
No 74
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.73 E-value=4.6e-08 Score=83.16 Aligned_cols=86 Identities=13% Similarity=0.237 Sum_probs=65.0
Q ss_pred HHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe------------------
Q 035738 181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM------------------ 235 (333)
Q Consensus 181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv------------------ 235 (333)
+++.++ .....+|||+|||+|.++..+++..|..+++++|+ |.+++.++++ .++
T Consensus 32 l~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~ 110 (196)
T PRK07402 32 LISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAP 110 (196)
T ss_pred HHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCC
Confidence 344444 56778999999999999999998899999999999 8888776542 122
Q ss_pred -EEEccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738 236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 236 -~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
.+.++. ......+++++.+.|+|||++++...
T Consensus 111 d~v~~~~-~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 111 DRVCIEG-GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CEEEEEC-CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 111111 12345899999999999999998875
No 75
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.72 E-value=2e-07 Score=80.08 Aligned_cols=109 Identities=12% Similarity=0.058 Sum_probs=77.8
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC------------------CCC---------------
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP------------------HPC--------------- 234 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~g--------------- 234 (333)
....+|||+|||.|..+..|+++ ..+++++|+ |.+++.+.+ ..+
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 45679999999999999999875 567999999 777775310 000
Q ss_pred ------e---EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCC--CcCCHH
Q 035738 235 ------M---WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGG--KERTRH 303 (333)
Q Consensus 235 ------v---~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g--~~rt~~ 303 (333)
+ .++|.++++...+.++++.++|+|||++++.-...+.... +| ...+.+
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~--------------------~gpp~~~~~~ 170 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEM--------------------AGPPFSVSPA 170 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCC--------------------CCcCCCCCHH
Confidence 1 4567788888889999999999999998887765432110 11 135788
Q ss_pred HHHHHHHhCCCCeeEEe
Q 035738 304 EFMTLATGAGFSGISCE 320 (333)
Q Consensus 304 e~~~ll~~aGf~~~~~~ 320 (333)
++.++|.. +|.+..+.
T Consensus 171 eL~~~f~~-~~~i~~~~ 186 (213)
T TIGR03840 171 EVEALYGG-HYEIELLE 186 (213)
T ss_pred HHHHHhcC-CceEEEEe
Confidence 99998864 45555443
No 76
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.69 E-value=3.7e-08 Score=85.45 Aligned_cols=122 Identities=16% Similarity=0.116 Sum_probs=78.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----C-Ce------------------------EEE
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----P-CM------------------------WIL 238 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~-gv------------------------~vL 238 (333)
...+|||+|||+|.++..+++..+ +++++|+ +.+++.+++. . .+ .++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 467999999999999998887654 5889998 6666554321 0 01 334
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHH-hhCCC-----CCcCCHHHHHHHHHhC
Q 035738 239 HDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMM-IQSPG-----GKERTRHEFMTLATGA 312 (333)
Q Consensus 239 h~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~-~~~~~-----g~~rt~~e~~~ll~~a 312 (333)
|+..+.. .+|+++++.|+|||.+++........ . .........+. ...+. ....+.++|.++++++
T Consensus 123 ~~~~~~~--~~l~~~~~~L~~gG~l~i~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 194 (224)
T TIGR01983 123 EHVPDPQ--AFIRACAQLLKPGGILFFSTINRTPK---S---YLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESA 194 (224)
T ss_pred HhCCCHH--HHHHHHHHhcCCCcEEEEEecCCCch---H---HHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHc
Confidence 5555554 79999999999999998876532110 0 00000000000 00011 1244788999999999
Q ss_pred CCCeeEEee
Q 035738 313 GFSGISCER 321 (333)
Q Consensus 313 Gf~~~~~~~ 321 (333)
||+++++..
T Consensus 195 G~~i~~~~~ 203 (224)
T TIGR01983 195 GLRVKDVKG 203 (224)
T ss_pred CCeeeeeee
Confidence 999988754
No 77
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.69 E-value=8e-08 Score=88.80 Aligned_cols=88 Identities=18% Similarity=0.199 Sum_probs=64.7
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe-----------------
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM----------------- 235 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv----------------- 235 (333)
.+++.+. ......+||||||+|.++..+++++|+..++++|+ +.+++.+.+. .++
T Consensus 113 ~~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 113 NFLDFIS-KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHHhc-CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 3444444 33456899999999999999999999999999999 7776655431 122
Q ss_pred ---EEEccCChhH---------HHHHHHHHHHhCCCCcEEEEEee
Q 035738 236 ---WILHDWNDEH---------CLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 236 ---~vLh~~~~~~---------~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
.|..+++++. ...+|+.++++|+|||.+.+..-
T Consensus 192 s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 192 SVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred ceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 3333455441 14789999999999999888654
No 78
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.66 E-value=2.8e-07 Score=78.45 Aligned_cols=82 Identities=13% Similarity=0.201 Sum_probs=60.5
Q ss_pred hhccCCCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCCCC-------CCe------------------
Q 035738 183 ESYKGFDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVPPH-------PCM------------------ 235 (333)
Q Consensus 183 ~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~gv------------------ 235 (333)
..+. .....+|||+|||+|.++..+++.. +..+++++|+ +.+++.++++ .++
T Consensus 34 ~~l~-~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~ 112 (198)
T PRK00377 34 SKLR-LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKF 112 (198)
T ss_pred HHcC-CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCC
Confidence 3344 6677899999999999999998764 6689999999 8888866432 111
Q ss_pred -EEEccCChhHHHHHHHHHHHhCCCCcEEEE
Q 035738 236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIA 265 (333)
Q Consensus 236 -~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i 265 (333)
.++..........+|+.+.+.|+|||++++
T Consensus 113 D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 113 DRIFIGGGSEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred CEEEECCCcccHHHHHHHHHHHcCCCcEEEE
Confidence 223222333446899999999999999876
No 79
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.65 E-value=2.8e-07 Score=77.60 Aligned_cols=141 Identities=13% Similarity=0.220 Sum_probs=92.8
Q ss_pred HHHHHHHHhhhhhhhHH----HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCCCC---
Q 035738 163 NKHFNTVMYNYTSLVMS----NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPHPC--- 234 (333)
Q Consensus 163 ~~~f~~~m~~~~~~~~~----~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~g--- 234 (333)
.+.|.+..-..-.+..+ +.+...+ ...+.++||+|||||.++..+...-.. .+++|+ ..|++.|.+...
T Consensus 95 Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a~~--ltGvDiS~nMl~kA~eKg~YD~ 171 (287)
T COG4976 95 AERFDHILVDKLGYSVPELLAEMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMADR--LTGVDISENMLAKAHEKGLYDT 171 (287)
T ss_pred HHHHHHHHHHHhcCccHHHHHHHHHhcc-CCccceeeecccCcCcccHhHHHHHhh--ccCCchhHHHHHHHHhccchHH
Confidence 44555544433333333 3333333 445899999999999999988776644 677899 789998876310
Q ss_pred -------------------e----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHH
Q 035738 235 -------------------M----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMM 291 (333)
Q Consensus 235 -------------------v----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~ 291 (333)
+ .||-++.+-+ .++--+...|+|||.+.+.-...++... +...
T Consensus 172 L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le--~~~~~aa~~L~~gGlfaFSvE~l~~~~~------------f~l~ 237 (287)
T COG4976 172 LYVAEAVLFLEDLTQERFDLIVAADVLPYLGALE--GLFAGAAGLLAPGGLFAFSVETLPDDGG------------FVLG 237 (287)
T ss_pred HHHHHHHHHhhhccCCcccchhhhhHHHhhcchh--hHHHHHHHhcCCCceEEEEecccCCCCC------------eecc
Confidence 0 5555555443 7889999999999999888776665321 1111
Q ss_pred hhCCCCC-cCCHHHHHHHHHhCCCCeeEEeecC
Q 035738 292 IQSPGGK-ERTRHEFMTLATGAGFSGISCERAI 323 (333)
Q Consensus 292 ~~~~~g~-~rt~~e~~~ll~~aGf~~~~~~~~~ 323 (333)
+..+ -.+..-.+++++..||.++.+.+++
T Consensus 238 ---ps~RyAH~~~YVr~~l~~~Gl~~i~~~~tt 267 (287)
T COG4976 238 ---PSQRYAHSESYVRALLAASGLEVIAIEDTT 267 (287)
T ss_pred ---hhhhhccchHHHHHHHHhcCceEEEeeccc
Confidence 1111 1235567899999999999987653
No 80
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.64 E-value=2.2e-07 Score=83.76 Aligned_cols=78 Identities=21% Similarity=0.245 Sum_probs=57.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CC----e----------------EEEccCChhH
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PC----M----------------WILHDWNDEH 245 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~g----v----------------~vLh~~~~~~ 245 (333)
+..+|||||||+|.++..+++. +..+++++|+ |.+++.++++ .+ + .|+.+...+.
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~~ 237 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAEV 237 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHHH
Confidence 4589999999999999887764 4458999999 7888877653 11 1 2222233334
Q ss_pred HHHHHHHHHHhCCCCcEEEEEee
Q 035738 246 CLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 246 ~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
...+++++.+.|+|||++++...
T Consensus 238 l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 238 IKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred HHHHHHHHHHHcCCCcEEEEEeC
Confidence 56899999999999999988765
No 81
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.64 E-value=1e-07 Score=87.66 Aligned_cols=87 Identities=20% Similarity=0.292 Sum_probs=65.0
Q ss_pred HHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------C------Ce---------EE-
Q 035738 181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------P------CM---------WI- 237 (333)
Q Consensus 181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~------gv---------~v- 237 (333)
+++.++ .....+|||+|||+|.++..+++++|+.+++++|+ +.+++.++++ . ++ .|
T Consensus 188 Ll~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlIv 266 (342)
T PRK09489 188 LLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMII 266 (342)
T ss_pred HHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEEE
Confidence 444444 33345899999999999999999999999999999 7788777542 0 10 22
Q ss_pred ----EccC---ChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738 238 ----LHDW---NDEHCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 238 ----Lh~~---~~~~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
+|+. +.....++++++.+.|+|||.++|+-.
T Consensus 267 sNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 267 SNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 3331 234457899999999999999998765
No 82
>PRK14968 putative methyltransferase; Provisional
Probab=98.63 E-value=7.9e-07 Score=74.78 Aligned_cols=114 Identities=18% Similarity=0.266 Sum_probs=76.8
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CC--e-----------------EEEccC-
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PC--M-----------------WILHDW- 241 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~g--v-----------------~vLh~~- 241 (333)
.+..+|||+|||+|.++..+++. ..+++++|+ +.+++.++++ .+ + .++.+.
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 45678999999999999999987 578999999 7888766321 11 2 111110
Q ss_pred --C---------------------hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCC
Q 035738 242 --N---------------------DEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGK 298 (333)
Q Consensus 242 --~---------------------~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~ 298 (333)
+ ......+++++.+.|+|||.++++....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~---------------------------- 151 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL---------------------------- 151 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc----------------------------
Confidence 0 1113468999999999999988764310
Q ss_pred cCCHHHHHHHHHhCCCCeeEEeecC---CceeEEEEeC
Q 035738 299 ERTRHEFMTLATGAGFSGISCERAI---GNLWVMEFYK 333 (333)
Q Consensus 299 ~rt~~e~~~ll~~aGf~~~~~~~~~---~~~~vie~~~ 333 (333)
...+++.++++++||++..+.... .-..+++.+|
T Consensus 152 -~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 188 (188)
T PRK14968 152 -TGEDEVLEYLEKLGFEAEVVAEEKFPFEELIVLELVK 188 (188)
T ss_pred -CCHHHHHHHHHHCCCeeeeeeecccCCceEEEEEEeC
Confidence 124578899999999888765543 2233455443
No 83
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.62 E-value=4.5e-07 Score=78.20 Aligned_cols=111 Identities=14% Similarity=0.104 Sum_probs=77.7
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC-C-----------------CCe-------------
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP-H-----------------PCM------------- 235 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~-----------------~gv------------- 235 (333)
.....+|||+|||.|..+..|+++ ..+++++|+ +..++.+.+ . ..|
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~ 112 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA 112 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence 345679999999999999999874 568999999 777775410 0 000
Q ss_pred -----------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCC--CcCCH
Q 035738 236 -----------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGG--KERTR 302 (333)
Q Consensus 236 -----------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g--~~rt~ 302 (333)
.++|.++++...+.++.+.++|+|||+++++....++... +| ...+.
T Consensus 113 ~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~--------------------~gPp~~~~~ 172 (218)
T PRK13255 113 DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEEL--------------------AGPPFSVSD 172 (218)
T ss_pred cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccC--------------------CCCCCCCCH
Confidence 4457888888889999999999999986665554432210 11 13578
Q ss_pred HHHHHHHHhCCCCeeEEee
Q 035738 303 HEFMTLATGAGFSGISCER 321 (333)
Q Consensus 303 ~e~~~ll~~aGf~~~~~~~ 321 (333)
+|+.+++.. +|.+..+..
T Consensus 173 ~el~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 173 EEVEALYAG-CFEIELLER 190 (218)
T ss_pred HHHHHHhcC-CceEEEeee
Confidence 999999964 265555443
No 84
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.61 E-value=2.7e-07 Score=81.40 Aligned_cols=104 Identities=14% Similarity=0.258 Sum_probs=75.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe-----------------EEEcc-----
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM-----------------WILHD----- 240 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv-----------------~vLh~----- 240 (333)
...+|||+|||+|.++..+++.+|+.+++++|+ +.+++.++++ .++ .|+.+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 446899999999999999999999999999999 8888776542 111 22211
Q ss_pred ------CChhH------------------HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCC
Q 035738 241 ------WNDEH------------------CLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPG 296 (333)
Q Consensus 241 ------~~~~~------------------~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~ 296 (333)
+..+. ...+++++.+.|+|||.+++.-.
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~---------------------------- 218 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG---------------------------- 218 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC----------------------------
Confidence 11111 13678999999999998876211
Q ss_pred CCcCCHHHHHHHHHhCCCCeeEEeecC
Q 035738 297 GKERTRHEFMTLATGAGFSGISCERAI 323 (333)
Q Consensus 297 g~~rt~~e~~~ll~~aGf~~~~~~~~~ 323 (333)
....+++.++|+++||+.+++....
T Consensus 219 --~~~~~~~~~~l~~~gf~~v~~~~d~ 243 (251)
T TIGR03534 219 --YDQGEAVRALFEAAGFADVETRKDL 243 (251)
T ss_pred --ccHHHHHHHHHHhCCCCceEEEeCC
Confidence 0125678999999999988876643
No 85
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.61 E-value=1.9e-07 Score=83.76 Aligned_cols=130 Identities=18% Similarity=0.204 Sum_probs=88.5
Q ss_pred HHHHHhhhhhhhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CCe------
Q 035738 166 FNTVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PCM------ 235 (333)
Q Consensus 166 f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~gv------ 235 (333)
|...-+..+......+-. + ..++.+|||||||||-+++..++... -+++++|+ |.+++.++++ -++
T Consensus 140 FGTG~H~TT~lcl~~l~~-~--~~~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v 215 (295)
T PF06325_consen 140 FGTGHHPTTRLCLELLEK-Y--VKPGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVEDRIEV 215 (295)
T ss_dssp S-SSHCHHHHHHHHHHHH-H--SSTTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEEE
T ss_pred ccCCCCHHHHHHHHHHHH-h--ccCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEEE
Confidence 444444444444433332 3 33567999999999999999888654 47999999 8888887754 111
Q ss_pred ------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHH
Q 035738 236 ------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRH 303 (333)
Q Consensus 236 ------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~ 303 (333)
-|+-+.-.+....+...+.+.|+|||++++.=.... ..+
T Consensus 216 ~~~~~~~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~~-----------------------------~~~ 266 (295)
T PF06325_consen 216 SLSEDLVEGKFDLVVANILADVLLELAPDIASLLKPGGYLILSGILEE-----------------------------QED 266 (295)
T ss_dssp SCTSCTCCS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEEGG-----------------------------GHH
T ss_pred EEecccccccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEccccHH-----------------------------HHH
Confidence 455555556667889999999999999888655321 145
Q ss_pred HHHHHHHhCCCCeeEEeecCCceeEE
Q 035738 304 EFMTLATGAGFSGISCERAIGNLWVM 329 (333)
Q Consensus 304 e~~~ll~~aGf~~~~~~~~~~~~~vi 329 (333)
++.+.+++ ||+.++....+++..+.
T Consensus 267 ~v~~a~~~-g~~~~~~~~~~~W~~l~ 291 (295)
T PF06325_consen 267 EVIEAYKQ-GFELVEEREEGEWVALV 291 (295)
T ss_dssp HHHHHHHT-TEEEEEEEEETTEEEEE
T ss_pred HHHHHHHC-CCEEEEEEEECCEEEEE
Confidence 67778877 99999888877776654
No 86
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.61 E-value=2.1e-07 Score=83.30 Aligned_cols=75 Identities=21% Similarity=0.305 Sum_probs=57.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCC---eEEEeec-hhHhhhCCCC-CCe------------------EEEccCChhHH
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYI---KGINFDL-PHVIEHVPPH-PCM------------------WILHDWNDEHC 246 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~---~~~~~D~-~~~~~~a~~~-~gv------------------~vLh~~~~~~~ 246 (333)
...+|||||||+|.++..+++..|.. +++++|+ +.+++.|++. +++ .|+..+.+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~--- 161 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYAP--- 161 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecCC---
Confidence 45789999999999999999988753 6899999 8888877543 222 33333332
Q ss_pred HHHHHHHHHhCCCCcEEEEEee
Q 035738 247 LKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 247 ~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
..+++++++|+|||+++++.+
T Consensus 162 -~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 162 -CKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred -CCHHHHHhhccCCCEEEEEeC
Confidence 357899999999999999865
No 87
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.56 E-value=7.5e-07 Score=73.83 Aligned_cols=125 Identities=14% Similarity=0.150 Sum_probs=80.2
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-CCe-----------------------EEEccCC
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-PCM-----------------------WILHDWN 242 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~gv-----------------------~vLh~~~ 242 (333)
.++..||||+|||.|.++..|.+. .++++.|+|+ ++-+..+.+. -+| .+|....
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~ 89 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR 89 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh
Confidence 446799999999999999888775 6899999999 5545444332 011 4444444
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEeeecCC---------CCCCcc-ccccccchhhHHHhhCCCCCcCCHHHHHHHHHhC
Q 035738 243 DEHCLKLLKNCYKSIPEDGKVIAVELMLPE---------VPNTSI-ESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGA 312 (333)
Q Consensus 243 ~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~---------~~~~~~-~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~a 312 (333)
.++ ++|+++.++ |.+.+|.=+.... ...++. ......|++ ++|-...|..++.+++++.
T Consensus 90 ~P~--~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYd------TPNih~~Ti~DFe~lc~~~ 158 (193)
T PF07021_consen 90 RPD--EVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYD------TPNIHLCTIKDFEDLCREL 158 (193)
T ss_pred HHH--HHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccC------CCCcccccHHHHHHHHHHC
Confidence 444 788888776 4444443331110 000110 011123333 4677788999999999999
Q ss_pred CCCeeEEeecCC
Q 035738 313 GFSGISCERAIG 324 (333)
Q Consensus 313 Gf~~~~~~~~~~ 324 (333)
|+++++.....+
T Consensus 159 ~i~I~~~~~~~~ 170 (193)
T PF07021_consen 159 GIRIEERVFLDG 170 (193)
T ss_pred CCEEEEEEEEcC
Confidence 999999887753
No 88
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=6.6e-07 Score=79.62 Aligned_cols=110 Identities=17% Similarity=0.220 Sum_probs=80.2
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CC---e---------------EEEccCCh
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PC---M---------------WILHDWND 243 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~g---v---------------~vLh~~~~ 243 (333)
.++.+|+|||||+|-++++.++-.. .+++++|+ |..++.++.+ +. + -|.++.=-
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA 239 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILA 239 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhH
Confidence 4789999999999999998887554 47899999 7778777653 10 0 23333333
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeecC
Q 035738 244 EHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAI 323 (333)
Q Consensus 244 ~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 323 (333)
+...++...+++.++|||++++.-.+ .+ ..+...+.+.++||.++++....
T Consensus 240 ~vl~~La~~~~~~lkpgg~lIlSGIl-~~----------------------------q~~~V~~a~~~~gf~v~~~~~~~ 290 (300)
T COG2264 240 EVLVELAPDIKRLLKPGGRLILSGIL-ED----------------------------QAESVAEAYEQAGFEVVEVLERE 290 (300)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEeeh-Hh----------------------------HHHHHHHHHHhCCCeEeEEEecC
Confidence 44568999999999999998876542 11 14567888899999999988776
Q ss_pred CceeE
Q 035738 324 GNLWV 328 (333)
Q Consensus 324 ~~~~v 328 (333)
.+..+
T Consensus 291 eW~~i 295 (300)
T COG2264 291 EWVAI 295 (300)
T ss_pred CEEEE
Confidence 55443
No 89
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.54 E-value=1.3e-07 Score=79.21 Aligned_cols=120 Identities=15% Similarity=0.114 Sum_probs=78.1
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CC--e-----------------
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PC--M----------------- 235 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~g--v----------------- 235 (333)
..++..++ .-++.++||+|||.|..+..|+++. ..++.+|. +..++.+++. .+ +
T Consensus 20 s~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~~G--~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD 96 (192)
T PF03848_consen 20 SEVLEAVP-LLKPGKALDLGCGEGRNALYLASQG--FDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYD 96 (192)
T ss_dssp HHHHHHCT-TS-SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEE
T ss_pred HHHHHHHh-hcCCCcEEEcCCCCcHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcC
Confidence 34555555 4467899999999999999999975 56999999 6666654421 01 1
Q ss_pred -----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHH
Q 035738 236 -----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLAT 310 (333)
Q Consensus 236 -----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~ 310 (333)
.|+++++.+...++++++.+.++|||.+++...+..++. + .-.. -...+...|+.+.+
T Consensus 97 ~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~-p-------~~~~--------~~f~~~~~EL~~~y- 159 (192)
T PF03848_consen 97 FIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDY-P-------CPSP--------FPFLLKPGELREYY- 159 (192)
T ss_dssp EEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS----------SS----------S--B-TTHHHHHT-
T ss_pred EEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCC-C-------CCCC--------CCcccCHHHHHHHh-
Confidence 357888888889999999999999999888766432211 0 0000 11123567888888
Q ss_pred hCCCCeeEE
Q 035738 311 GAGFSGISC 319 (333)
Q Consensus 311 ~aGf~~~~~ 319 (333)
+||++++.
T Consensus 160 -~dW~il~y 167 (192)
T PF03848_consen 160 -ADWEILKY 167 (192)
T ss_dssp -TTSEEEEE
T ss_pred -CCCeEEEE
Confidence 47877764
No 90
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.53 E-value=3.3e-07 Score=77.78 Aligned_cols=88 Identities=18% Similarity=0.367 Sum_probs=70.9
Q ss_pred HHHhhcc-CCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----------C-------------
Q 035738 180 NILESYK-GFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----------P------------- 233 (333)
Q Consensus 180 ~~~~~~~-~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~------------- 233 (333)
..++.+. .+..+..+|||||.+|.++..+++.+....+.++|+ +..|..|+++ +
T Consensus 47 ~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~ 126 (288)
T KOG2899|consen 47 PRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGP 126 (288)
T ss_pred hhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccc
Confidence 3444443 256788999999999999999999999999999999 6778877653 1
Q ss_pred -----------------Ce--------------------------------EEEccCChhHHHHHHHHHHHhCCCCcEEE
Q 035738 234 -----------------CM--------------------------------WILHDWNDEHCLKLLKNCYKSIPEDGKVI 264 (333)
Q Consensus 234 -----------------gv--------------------------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~ 264 (333)
++ +|--+|.|+-..++|+++++.|.|||+++
T Consensus 127 is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLv 206 (288)
T KOG2899|consen 127 ISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILV 206 (288)
T ss_pred ccccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEE
Confidence 00 66668999999999999999999999865
Q ss_pred EEee
Q 035738 265 AVEL 268 (333)
Q Consensus 265 i~e~ 268 (333)
+ |+
T Consensus 207 v-EP 209 (288)
T KOG2899|consen 207 V-EP 209 (288)
T ss_pred E-cC
Confidence 4 54
No 91
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.52 E-value=1.4e-07 Score=78.37 Aligned_cols=79 Identities=19% Similarity=0.292 Sum_probs=61.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe-----------------EEEccCC---
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM-----------------WILHDWN--- 242 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv-----------------~vLh~~~--- 242 (333)
...+|||+|||+|..+..+++++|+.+++.+|+ +.+++.++++ .++ .|+.+.|
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 567899999999999999999999999999999 8888877653 112 4444432
Q ss_pred --h---hHHHHHHHHHHHhCCCCcEEEEEee
Q 035738 243 --D---EHCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 243 --~---~~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
+ .-..++++.+.+.|+|||.++++-.
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 1 1356899999999999999987554
No 92
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.52 E-value=7e-08 Score=80.10 Aligned_cols=115 Identities=12% Similarity=0.194 Sum_probs=81.7
Q ss_pred hccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----CCe----------------------E
Q 035738 184 SYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----PCM----------------------W 236 (333)
Q Consensus 184 ~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~gv----------------------~ 236 (333)
.++ -....+++|+|||.|.++..|+.++. +.+++|+ +..++.|++. ++| .
T Consensus 38 aLp-~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SE 114 (201)
T PF05401_consen 38 ALP-RRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSE 114 (201)
T ss_dssp HHT-TSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES
T ss_pred hcC-ccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEeh
Confidence 355 66778999999999999999999974 6888999 8889888653 222 8
Q ss_pred EEccCCh-hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCC
Q 035738 237 ILHDWND-EHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFS 315 (333)
Q Consensus 237 vLh~~~~-~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~ 315 (333)
|+|++++ ++...+++++.++|+|||.+++...... ... .-|.....+.+.++|++. |+
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~-----------------~c~---~wgh~~ga~tv~~~~~~~-~~ 173 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDA-----------------NCR---RWGHAAGAETVLEMLQEH-LT 173 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH-----------------HHH---HTT-S--HHHHHHHHHHH-SE
T ss_pred HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCC-----------------ccc---ccCcccchHHHHHHHHHH-hh
Confidence 8899986 5677899999999999999999876210 000 122333577888888876 56
Q ss_pred eeEEeec
Q 035738 316 GISCERA 322 (333)
Q Consensus 316 ~~~~~~~ 322 (333)
.++...+
T Consensus 174 ~~~~~~~ 180 (201)
T PF05401_consen 174 EVERVEC 180 (201)
T ss_dssp EEEEEEE
T ss_pred heeEEEE
Confidence 6666554
No 93
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.50 E-value=1.5e-06 Score=76.16 Aligned_cols=136 Identities=17% Similarity=0.160 Sum_probs=92.0
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCC--CeEEEeec-hhHhhhCCCC-----------------------------CCe
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPY--IKGINFDL-PHVIEHVPPH-----------------------------PCM 235 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~-----------------------------~gv 235 (333)
-..+.+||||.||+|.+....+..+|. .++...|. |..++..++. |++
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 347889999999999999999999997 67888898 7777765532 111
Q ss_pred ----EEEccCChhH-HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCC-----CcCCHHHH
Q 035738 236 ----WILHDWNDEH-CLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGG-----KERTRHEF 305 (333)
Q Consensus 236 ----~vLh~~~~~~-~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g-----~~rt~~e~ 305 (333)
-+.-.++|.+ +.+.|+-+++++.|||.++..-.-. ++..+ ........+ .+| +.||..|+
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPw-----HPQle----~IAr~LtsH-r~g~~WvMRrRsq~Em 282 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPW-----HPQLE----MIARVLTSH-RDGKAWVMRRRSQAEM 282 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCC-----CcchH----HHHHHHhcc-cCCCceEEEecCHHHH
Confidence 3333567766 4467999999999999988765422 11111 111122211 122 46899999
Q ss_pred HHHHHhCCCCeeEEeecC-CceeEEEEeC
Q 035738 306 MTLATGAGFSGISCERAI-GNLWVMEFYK 333 (333)
Q Consensus 306 ~~ll~~aGf~~~~~~~~~-~~~~vie~~~ 333 (333)
.+|.+.|||+.++..--. +-+.|..++|
T Consensus 283 D~Lv~~aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 283 DQLVEAAGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred HHHHHHcCCchhhheeccCCceEEEeecC
Confidence 999999999877654333 4455655543
No 94
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.50 E-value=1.8e-06 Score=77.41 Aligned_cols=44 Identities=18% Similarity=0.342 Sum_probs=38.3
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP 231 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 231 (333)
..+..+|||+|||+|..+..++...|+.+++++|+ +.+++.+++
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~ 150 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARR 150 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence 44667999999999999999999999999999999 777776653
No 95
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.47 E-value=1.2e-06 Score=73.43 Aligned_cols=139 Identities=17% Similarity=0.187 Sum_probs=81.7
Q ss_pred HHHHHHHhhhhhhhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhh---C--CCCC-----
Q 035738 164 KHFNTVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEH---V--PPHP----- 233 (333)
Q Consensus 164 ~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~---a--~~~~----- 233 (333)
.-|.+.+..|.....+.+++.+...+....|.|.|||.+.++..+... .++.-+|+-..-+. | ...|
T Consensus 46 ~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~---~~V~SfDLva~n~~Vtacdia~vPL~~~s 122 (219)
T PF05148_consen 46 EGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNK---HKVHSFDLVAPNPRVTACDIANVPLEDES 122 (219)
T ss_dssp HHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS-SSTTEEES-TTS-S--TT-
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcccC---ceEEEeeccCCCCCEEEecCccCcCCCCc
Confidence 345555556666667777777764556789999999999999766432 34555565111110 0 1111
Q ss_pred -Ce--EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHH
Q 035738 234 -CM--WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLAT 310 (333)
Q Consensus 234 -gv--~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~ 310 (333)
+| ++|.-... +....|+++.|+|||||.+.|.|.... + -+.+++.+.++
T Consensus 123 vDv~VfcLSLMGT-n~~~fi~EA~RvLK~~G~L~IAEV~SR----------f-----------------~~~~~F~~~~~ 174 (219)
T PF05148_consen 123 VDVAVFCLSLMGT-NWPDFIREANRVLKPGGILKIAEVKSR----------F-----------------ENVKQFIKALK 174 (219)
T ss_dssp EEEEEEES---SS--HHHHHHHHHHHEEEEEEEEEEEEGGG----------------------------S-HHHHHHHHH
T ss_pred eeEEEEEhhhhCC-CcHHHHHHHHheeccCcEEEEEEeccc----------C-----------------cCHHHHHHHHH
Confidence 12 55554443 345899999999999999999998321 0 13667889999
Q ss_pred hCCCCeeEEeecCCceeEEEEeC
Q 035738 311 GAGFSGISCERAIGNLWVMEFYK 333 (333)
Q Consensus 311 ~aGf~~~~~~~~~~~~~vie~~~ 333 (333)
..||+.........++.+++..|
T Consensus 175 ~~GF~~~~~d~~n~~F~~f~F~K 197 (219)
T PF05148_consen 175 KLGFKLKSKDESNKHFVLFEFKK 197 (219)
T ss_dssp CTTEEEEEEE--STTEEEEEEEE
T ss_pred HCCCeEEecccCCCeEEEEEEEE
Confidence 99999888765566677777654
No 96
>PRK04457 spermidine synthase; Provisional
Probab=98.46 E-value=4.4e-07 Score=80.59 Aligned_cols=79 Identities=22% Similarity=0.373 Sum_probs=61.4
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe-------------------EEEcc-
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM-------------------WILHD- 240 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv-------------------~vLh~- 240 (333)
+++.+|||||||+|.++..+++.+|+.+++++|+ |.+++.++++ +.+ .|+-+
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 3567999999999999999999999999999999 8999887653 112 23322
Q ss_pred CChh------HHHHHHHHHHHhCCCCcEEEEEe
Q 035738 241 WNDE------HCLKLLKNCYKSIPEDGKVIAVE 267 (333)
Q Consensus 241 ~~~~------~~~~lL~~~~~~L~pgG~l~i~e 267 (333)
++.. ...++++++++.|+|||++++.-
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 1111 12589999999999999998853
No 97
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.46 E-value=8.7e-07 Score=75.18 Aligned_cols=126 Identities=10% Similarity=0.033 Sum_probs=73.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------------C-------Ce----EEEccCChh
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------------P-------CM----WILHDWNDE 244 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------------~-------gv----~vLh~~~~~ 244 (333)
...+|||||||+|.++..+++. ...+++++|+ +.+++.+++. + ++ .+||+.++.
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~ 91 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNP 91 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcCH
Confidence 5679999999999999888765 3567899998 6776654321 0 11 667777765
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCcc-----ccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEE
Q 035738 245 HCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSI-----ESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISC 319 (333)
Q Consensus 245 ~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~-----~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~ 319 (333)
. ++|+++.+.+++ +++.-+.......... .......+...... .+.....+.+++.++++++||+++++
T Consensus 92 ~--~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~ll~~~Gf~v~~~ 165 (194)
T TIGR02081 92 E--EILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYN-TPNIHFCTIADFEDLCGELNLRILDR 165 (194)
T ss_pred H--HHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccC-CCCcccCcHHHHHHHHHHCCCEEEEE
Confidence 4 788888887553 3332111100000000 00000000000000 01234678999999999999999987
Q ss_pred eec
Q 035738 320 ERA 322 (333)
Q Consensus 320 ~~~ 322 (333)
...
T Consensus 166 ~~~ 168 (194)
T TIGR02081 166 AAF 168 (194)
T ss_pred EEe
Confidence 765
No 98
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.44 E-value=8e-07 Score=72.24 Aligned_cols=103 Identities=17% Similarity=0.129 Sum_probs=71.2
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CC-e---------------------------
Q 035738 191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PC-M--------------------------- 235 (333)
Q Consensus 191 ~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~g-v--------------------------- 235 (333)
..+|||+|||+|.++..|++.--.-+.+++|. +.+++.|+.. ++ +
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 34999999999999999998755556788898 7777766532 22 1
Q ss_pred -EEEc-cCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCC
Q 035738 236 -WILH-DWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAG 313 (333)
Q Consensus 236 -~vLh-~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aG 313 (333)
.-|| +-++......+..+.+.|+|||+++|... ..|.+|+.+.++.-|
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC------------------------------N~T~dELv~~f~~~~ 197 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC------------------------------NFTKDELVEEFENFN 197 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEEec------------------------------CccHHHHHHHHhcCC
Confidence 1122 11111113456666677777777766543 236889999999999
Q ss_pred CCeeEEeecC
Q 035738 314 FSGISCERAI 323 (333)
Q Consensus 314 f~~~~~~~~~ 323 (333)
|....++|++
T Consensus 198 f~~~~tvp~p 207 (227)
T KOG1271|consen 198 FEYLSTVPTP 207 (227)
T ss_pred eEEEEeeccc
Confidence 9999998876
No 99
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.42 E-value=2e-06 Score=74.60 Aligned_cols=45 Identities=13% Similarity=0.217 Sum_probs=40.5
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH 232 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~ 232 (333)
.....+|||+|||+|..+..+++++++++++++++ +.+.+.|+++
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~n 87 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRN 87 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHH
Confidence 45589999999999999999999999999999999 7888888753
No 100
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.42 E-value=6.2e-07 Score=78.38 Aligned_cols=121 Identities=17% Similarity=0.285 Sum_probs=71.5
Q ss_pred CCCeEEEEcCCc--cHHHHHH-HHHCCCCeEEEeec-hhHhhhCCCC----CC--e------------------------
Q 035738 190 NIKQLVDVGGGI--GVTLQAI-TTKYPYIKGINFDL-PHVIEHVPPH----PC--M------------------------ 235 (333)
Q Consensus 190 ~~~~vlDVGgG~--G~~~~~l-~~~~p~~~~~~~D~-~~~~~~a~~~----~g--v------------------------ 235 (333)
+..++||||||- -...-++ .+..|+.+++.+|. |-++.+++.. ++ .
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 788999999993 3344444 55689999999999 8888887642 21 0
Q ss_pred ----------EEEccCCh-hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHH
Q 035738 236 ----------WILHDWND-EHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHE 304 (333)
Q Consensus 236 ----------~vLh~~~~-~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e 304 (333)
.+||+.+| ++...+++.++++|.||+.|+|...+.+..+.. .......+-.. ...+..||.+|
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~-----~~~~~~~~~~~-~~~~~~Rs~~e 221 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPER-----AEALEAVYAQA-GSPGRPRSREE 221 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHH-----HHHHHHHHHHC-CS----B-HHH
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHH-----HHHHHHHHHcC-CCCceecCHHH
Confidence 77899887 677899999999999999999999876532110 11112222222 23567899999
Q ss_pred HHHHHHhCCCCeeE
Q 035738 305 FMTLATGAGFSGIS 318 (333)
Q Consensus 305 ~~~ll~~aGf~~~~ 318 (333)
+.++|. ||+.++
T Consensus 222 i~~~f~--g~elve 233 (267)
T PF04672_consen 222 IAAFFD--GLELVE 233 (267)
T ss_dssp HHHCCT--TSEE-T
T ss_pred HHHHcC--CCccCC
Confidence 999995 887653
No 101
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.40 E-value=1.1e-06 Score=75.76 Aligned_cols=84 Identities=12% Similarity=0.141 Sum_probs=61.1
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC------CCe---------------
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH------PCM--------------- 235 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~gv--------------- 235 (333)
..+++.+. ..+..+|||||||+|.++..+++..+ +.+++++|+ +.+++.++++ .++
T Consensus 67 ~~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 67 AMMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence 34455555 66788999999999999999998865 578999998 8888877643 122
Q ss_pred ---EEEccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 035738 236 ---WILHDWNDEHCLKLLKNCYKSIPEDGKVIAV 266 (333)
Q Consensus 236 ---~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~ 266 (333)
.++.+.+ +..+.+.+.+.|+|||++++.
T Consensus 146 ~fD~Ii~~~~---~~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 146 PYDRIYVTAA---GPKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred CCCEEEEcCC---cccccHHHHHhcCcCcEEEEE
Confidence 2222211 235778889999999998875
No 102
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.37 E-value=8.2e-07 Score=75.49 Aligned_cols=73 Identities=23% Similarity=0.380 Sum_probs=57.3
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCCCCe------------------------------EEEc
Q 035738 191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPHPCM------------------------------WILH 239 (333)
Q Consensus 191 ~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~gv------------------------------~vLh 239 (333)
...++|||||+|..++.++..|.+ +|+.|. +.+++.+++.+.+ .++|
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~k~--VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~H 111 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHYKE--VIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVH 111 (261)
T ss_pred cceEEEeccCCCcchHHHHHhhhh--heeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHH
Confidence 348999999999888888888765 778899 8999999875221 7778
Q ss_pred cCChhHHHHHHHHHHHhCCCCc-EEEEEee
Q 035738 240 DWNDEHCLKLLKNCYKSIPEDG-KVIAVEL 268 (333)
Q Consensus 240 ~~~~~~~~~lL~~~~~~L~pgG-~l~i~e~ 268 (333)
.++-+ +..+.++++|+|.| .+.|--.
T Consensus 112 WFdle---~fy~~~~rvLRk~Gg~iavW~Y 138 (261)
T KOG3010|consen 112 WFDLE---RFYKEAYRVLRKDGGLIAVWNY 138 (261)
T ss_pred hhchH---HHHHHHHHHcCCCCCEEEEEEc
Confidence 77755 69999999998876 5555444
No 103
>PRK01581 speE spermidine synthase; Validated
Probab=98.37 E-value=1.3e-06 Score=79.92 Aligned_cols=79 Identities=20% Similarity=0.255 Sum_probs=61.9
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------------CCe------------------
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------------PCM------------------ 235 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------------~gv------------------ 235 (333)
..++.+||+||||+|..+..+++..+..+++.+|+ |.+++.|+++ +.+
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 34678999999999999999988666678999999 8899988852 222
Q ss_pred -EEEccCChhH--------HHHHHHHHHHhCCCCcEEEEE
Q 035738 236 -WILHDWNDEH--------CLKLLKNCYKSIPEDGKVIAV 266 (333)
Q Consensus 236 -~vLh~~~~~~--------~~~lL~~~~~~L~pgG~l~i~ 266 (333)
.|+-+++++. ..+.++.+++.|+|||.+++.
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 5556665542 246899999999999998886
No 104
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.36 E-value=4.8e-06 Score=71.42 Aligned_cols=88 Identities=18% Similarity=0.122 Sum_probs=57.2
Q ss_pred HHhhccCCCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeechhHhhh---------CCC----------C--CCe-EE
Q 035738 181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDLPHVIEH---------VPP----------H--PCM-WI 237 (333)
Q Consensus 181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~---------a~~----------~--~gv-~v 237 (333)
+.+.+..+.+..+|||||||+|.++..+++.. +..+++++|+..+... +.. . ..+ .|
T Consensus 42 ~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V 121 (209)
T PRK11188 42 IQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQVV 121 (209)
T ss_pred HHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEE
Confidence 33334324567799999999999999999986 4578999998432110 000 0 011 33
Q ss_pred EccC-----Chh---------HHHHHHHHHHHhCCCCcEEEEEee
Q 035738 238 LHDW-----NDE---------HCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 238 Lh~~-----~~~---------~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
+.+. .++ ....+|+.+++.|+|||.+++...
T Consensus 122 ~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 122 MSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred ecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 3322 111 124689999999999999999765
No 105
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.33 E-value=2.5e-06 Score=72.99 Aligned_cols=84 Identities=10% Similarity=0.050 Sum_probs=58.7
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC------CC-e---------------
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH------PC-M--------------- 235 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~g-v--------------- 235 (333)
.+++.+. ..+..+|||||||+|..+..+++..+ ..+++++|+ +.+++.++++ .+ +
T Consensus 63 ~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~ 141 (205)
T PRK13944 63 MMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHA 141 (205)
T ss_pred HHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCC
Confidence 3444444 56678999999999999999988764 568999999 7888766542 11 2
Q ss_pred ---EEEccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 035738 236 ---WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVE 267 (333)
Q Consensus 236 ---~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e 267 (333)
.++-... ...+.+++.+.|+|||++++..
T Consensus 142 ~fD~Ii~~~~---~~~~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 142 PFDAIIVTAA---ASTIPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred CccEEEEccC---cchhhHHHHHhcCcCcEEEEEE
Confidence 1111111 1245678889999999998753
No 106
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=3.9e-06 Score=72.29 Aligned_cols=99 Identities=12% Similarity=0.168 Sum_probs=79.1
Q ss_pred Hhhhhhh----hHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHH-HCCCCeEEEeec-hhHhhhCCCC---CC----e-
Q 035738 170 MYNYTSL----VMSNILESYKGFDNIKQLVDVGGGIGVTLQAITT-KYPYIKGINFDL-PHVIEHVPPH---PC----M- 235 (333)
Q Consensus 170 m~~~~~~----~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~~---~g----v- 235 (333)
|...+.. -+..++.... ..++.+|+|.|.|+|.++..|+. ..|.-+++.+|+ ++..+.|+++ .+ +
T Consensus 71 ~~R~tQiIyPKD~~~I~~~~g-i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~ 149 (256)
T COG2519 71 MKRRTQIIYPKDAGYIVARLG-ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVT 149 (256)
T ss_pred CcCCCceecCCCHHHHHHHcC-CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceE
Confidence 5544443 2344555555 88999999999999999999996 678899999999 8899988864 11 1
Q ss_pred ----------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 035738 236 ----------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLP 271 (333)
Q Consensus 236 ----------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~ 271 (333)
.++-|.+++. +.+.++.++|+|||.+++.-++.+
T Consensus 150 ~~~~Dv~~~~~~~~vDav~LDmp~PW--~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 150 LKLGDVREGIDEEDVDAVFLDLPDPW--NVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred EEeccccccccccccCEEEEcCCChH--HHHHHHHHHhCCCcEEEEEcCCHH
Confidence 6667888887 899999999999999999988654
No 107
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.31 E-value=8.7e-07 Score=75.08 Aligned_cols=76 Identities=14% Similarity=0.224 Sum_probs=55.2
Q ss_pred eEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC------CCCe---------------------EEEccCChh
Q 035738 193 QLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP------HPCM---------------------WILHDWNDE 244 (333)
Q Consensus 193 ~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~gv---------------------~vLh~~~~~ 244 (333)
.+||||||.|.++..+++.+|+..++|+|+ ...+..+.+ ..++ .+.-++||+
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP 99 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP 99 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence 899999999999999999999999999999 666554432 1222 333344544
Q ss_pred H-----------HHHHHHHHHHhCCCCcEEEEEee
Q 035738 245 H-----------CLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 245 ~-----------~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
. ....|+.+.+.|+|||.|.+..-
T Consensus 100 WpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 100 WPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp --SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 3 24689999999999998877654
No 108
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.28 E-value=1.3e-05 Score=74.75 Aligned_cols=43 Identities=19% Similarity=0.256 Sum_probs=38.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH 232 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~ 232 (333)
+..+|||+|||+|..+..+++.+|+.+++++|+ +.+++.++++
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreN 294 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKN 294 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 446899999999999999999999999999999 8899887754
No 109
>PRK14967 putative methyltransferase; Provisional
Probab=98.28 E-value=9.6e-06 Score=70.37 Aligned_cols=82 Identities=11% Similarity=0.095 Sum_probs=56.9
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CC--e-----------------EEEccC---
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PC--M-----------------WILHDW--- 241 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~g--v-----------------~vLh~~--- 241 (333)
.....+|||+|||+|.++..+++. +..+++++|+ +.+++.++++ .+ + .|+.+.
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 455679999999999999988875 3358999999 7777755432 11 1 222221
Q ss_pred Ch---------------------hHHHHHHHHHHHhCCCCcEEEEEeeec
Q 035738 242 ND---------------------EHCLKLLKNCYKSIPEDGKVIAVELML 270 (333)
Q Consensus 242 ~~---------------------~~~~~lL~~~~~~L~pgG~l~i~e~~~ 270 (333)
+. .....+++++.+.|+|||+++++....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 00 013468899999999999999876543
No 110
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.27 E-value=1.4e-05 Score=70.64 Aligned_cols=43 Identities=19% Similarity=0.190 Sum_probs=38.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH 232 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~ 232 (333)
...+|||+|||+|.++..+++.+|..+++++|+ +.+++.++++
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N 129 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRN 129 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 345899999999999999999999999999999 8888877653
No 111
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.27 E-value=4e-06 Score=72.18 Aligned_cols=85 Identities=12% Similarity=0.147 Sum_probs=60.6
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCCCC------CCe---------------
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVPPH------PCM--------------- 235 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~gv--------------- 235 (333)
..++..++ ..+..+|||||||+|..+..+++.. ++.+++++|+ +.+++.++++ .++
T Consensus 66 ~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~ 144 (212)
T PRK13942 66 AIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENA 144 (212)
T ss_pred HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCC
Confidence 34555555 6778899999999999999888875 4578999999 8888877653 122
Q ss_pred ---EEEccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 035738 236 ---WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVE 267 (333)
Q Consensus 236 ---~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e 267 (333)
.|+-.. ...++.+.+.+.|+|||++++..
T Consensus 145 ~fD~I~~~~---~~~~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 145 PYDRIYVTA---AGPDIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CcCEEEECC---CcccchHHHHHhhCCCcEEEEEE
Confidence 111111 12346677888999999988854
No 112
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.25 E-value=5.4e-06 Score=80.42 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=37.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP 231 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 231 (333)
...+|||+|||+|..+..++..+|+.+++++|+ +.+++.|++
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~ 180 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKS 180 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHH
Confidence 346899999999999999999999999999999 788887765
No 113
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.23 E-value=4e-06 Score=75.38 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=37.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP 231 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 231 (333)
+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~ 163 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEI 163 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence 457899999999999999999999999999999 888887764
No 114
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.23 E-value=1.4e-05 Score=68.65 Aligned_cols=152 Identities=14% Similarity=0.114 Sum_probs=90.6
Q ss_pred hhhhcCCchhHHHHHHHHh----hhhhhhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHH-------HCCCCeEEEee
Q 035738 153 FEYAGLDPGFNKHFNTVMY----NYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITT-------KYPYIKGINFD 221 (333)
Q Consensus 153 ~~~~~~~~~~~~~f~~~m~----~~~~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~-------~~p~~~~~~~D 221 (333)
+..+-++|+....|..... .|.....+.++..+...+....|.|+|||-+..+...-. .-++-+++.+|
T Consensus 139 ~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~~~~~kV~SfDL~a~~~~V~~cD 218 (325)
T KOG3045|consen 139 FDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIASSERHKVHSFDLVAVNERVIACD 218 (325)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhhccccceeeeeeecCCCceeecc
Confidence 3445566665555554443 333345566666665455778999999999998861110 01122334444
Q ss_pred chhHhhhCCCCCCe--EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCc
Q 035738 222 LPHVIEHVPPHPCM--WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKE 299 (333)
Q Consensus 222 ~~~~~~~a~~~~gv--~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~ 299 (333)
+..+ ......-+| ++|.-+.. +....+++++++|+|||.++|.|.-.. .
T Consensus 219 m~~v-Pl~d~svDvaV~CLSLMgt-n~~df~kEa~RiLk~gG~l~IAEv~SR---------------------------f 269 (325)
T KOG3045|consen 219 MRNV-PLEDESVDVAVFCLSLMGT-NLADFIKEANRILKPGGLLYIAEVKSR---------------------------F 269 (325)
T ss_pred ccCC-cCccCcccEEEeeHhhhcc-cHHHHHHHHHHHhccCceEEEEehhhh---------------------------c
Confidence 3221 000000122 66655443 345799999999999999999997321 1
Q ss_pred CCHHHHHHHHHhCCCCeeEEeecCCceeEEEEeC
Q 035738 300 RTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK 333 (333)
Q Consensus 300 rt~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 333 (333)
.+...+.+.|...||...++.....++..+|..|
T Consensus 270 ~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK 303 (325)
T KOG3045|consen 270 SDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKK 303 (325)
T ss_pred ccHHHHHHHHHHcCCeeeehhhhcceEEEEEEec
Confidence 1233478889999998777766666666776654
No 115
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.23 E-value=1.1e-06 Score=72.25 Aligned_cols=88 Identities=20% Similarity=0.191 Sum_probs=56.4
Q ss_pred EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccc-------------hhhHHHhhCCCCCcCCH
Q 035738 236 WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSD-------------SDVLMMIQSPGGKERTR 302 (333)
Q Consensus 236 ~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~-------------~d~~m~~~~~~g~~rt~ 302 (333)
.++|++++.. ++|++++++|||||+++|.|...++..-......+... .....+..+ -....+.
T Consensus 52 ~~l~~~~d~~--~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~s-i~~f~~~ 128 (160)
T PLN02232 52 YGLRNVVDRL--RAMKEMYRVLKPGSRVSILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYS-INGYLTG 128 (160)
T ss_pred chhhcCCCHH--HHHHHHHHHcCcCeEEEEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHH-HHHCcCH
Confidence 7788887655 99999999999999999999976543110000000000 000000000 0134589
Q ss_pred HHHHHHHHhCCCCeeEEeecCCce
Q 035738 303 HEFMTLATGAGFSGISCERAIGNL 326 (333)
Q Consensus 303 ~e~~~ll~~aGf~~~~~~~~~~~~ 326 (333)
+++.++|+++||+.++......+.
T Consensus 129 ~el~~ll~~aGF~~~~~~~~~~g~ 152 (160)
T PLN02232 129 EELETLALEAGFSSACHYEISGGF 152 (160)
T ss_pred HHHHHHHHHcCCCcceEEECcchH
Confidence 999999999999999888776554
No 116
>PRK00811 spermidine synthase; Provisional
Probab=98.22 E-value=4.2e-06 Score=75.24 Aligned_cols=78 Identities=27% Similarity=0.376 Sum_probs=60.0
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----------CCe-------------------EE
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----------PCM-------------------WI 237 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~gv-------------------~v 237 (333)
+++.+||+||||+|..+..+++..+..+++++|+ +.+++.++++ +.+ .|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 4678999999999999999997655668999999 8898888753 122 45
Q ss_pred EccCChhH-------HHHHHHHHHHhCCCCcEEEEE
Q 035738 238 LHDWNDEH-------CLKLLKNCYKSIPEDGKVIAV 266 (333)
Q Consensus 238 Lh~~~~~~-------~~~lL~~~~~~L~pgG~l~i~ 266 (333)
+.+.+++. ..++++.+++.|+|||.+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 55543321 247899999999999998864
No 117
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.22 E-value=9.4e-06 Score=74.70 Aligned_cols=101 Identities=14% Similarity=0.006 Sum_probs=69.8
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe------------------EEEccCC
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM------------------WILHDWN 242 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv------------------~vLh~~~ 242 (333)
+.+..+|||+|||+|.++.+++. ...+++++|+ +.+++.++.+ .++ .++.+.|
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~--~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGL--MGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHH--hCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 66778999999999999887655 3578999999 7887765532 111 3333211
Q ss_pred ------------hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHH
Q 035738 243 ------------DEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLAT 310 (333)
Q Consensus 243 ------------~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~ 310 (333)
.+...++|+++.+.|+|||++++.-+.. .+|.++++
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--------------------------------~~~~~~~~ 305 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--------------------------------IDLESLAE 305 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--------------------------------CCHHHHHh
Confidence 1223578999999999999988875411 13456788
Q ss_pred hCCCCeeEEeecC
Q 035738 311 GAGFSGISCERAI 323 (333)
Q Consensus 311 ~aGf~~~~~~~~~ 323 (333)
++|| ++......
T Consensus 306 ~~g~-i~~~~~~~ 317 (329)
T TIGR01177 306 DAFR-VVKRFEVR 317 (329)
T ss_pred hcCc-chheeeee
Confidence 8999 77766543
No 118
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.19 E-value=2e-05 Score=66.42 Aligned_cols=87 Identities=14% Similarity=0.149 Sum_probs=56.2
Q ss_pred HHhhccCCCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeechhHhh---------hCCC----------CC--Ce-EE
Q 035738 181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDLPHVIE---------HVPP----------HP--CM-WI 237 (333)
Q Consensus 181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~---------~a~~----------~~--gv-~v 237 (333)
+...+....+..+|||+|||+|.++..+++++ +..+++++|+..... .+.. .+ ++ .|
T Consensus 23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V 102 (188)
T TIGR00438 23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKPIENVDFIRGDFTDEEVLNKIRERVGDDKVDVV 102 (188)
T ss_pred HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccccCCCceEEEeeCCChhHHHHHHHHhCCCCccEE
Confidence 33444445678899999999999999998887 567899999833210 0000 00 11 22
Q ss_pred Ecc--------CCh------hHHHHHHHHHHHhCCCCcEEEEEe
Q 035738 238 LHD--------WND------EHCLKLLKNCYKSIPEDGKVIAVE 267 (333)
Q Consensus 238 Lh~--------~~~------~~~~~lL~~~~~~L~pgG~l~i~e 267 (333)
+.+ |+. +....+|+.+++.|+|||++++.-
T Consensus 103 ~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 103 MSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred EcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 211 110 112578999999999999988853
No 119
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.18 E-value=5.2e-06 Score=75.44 Aligned_cols=40 Identities=18% Similarity=0.279 Sum_probs=36.9
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738 192 KQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP 231 (333)
Q Consensus 192 ~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 231 (333)
.+|||+|||+|.++..++..+|+.+++++|+ +.+++.|++
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~ 175 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEI 175 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH
Confidence 6899999999999999999999999999999 888887764
No 120
>PRK03612 spermidine synthase; Provisional
Probab=98.17 E-value=1.1e-05 Score=78.77 Aligned_cols=78 Identities=22% Similarity=0.402 Sum_probs=61.2
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hhHhhhCCCC-------------CCe------------------
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPY-IKGINFDL-PHVIEHVPPH-------------PCM------------------ 235 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-------------~gv------------------ 235 (333)
+++.+|||||||+|..+..+++ +|. .+++++|+ |.+++.++++ |++
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 4678999999999999999987 565 78999999 8999988762 222
Q ss_pred -EEEccCChhH--------HHHHHHHHHHhCCCCcEEEEEe
Q 035738 236 -WILHDWNDEH--------CLKLLKNCYKSIPEDGKVIAVE 267 (333)
Q Consensus 236 -~vLh~~~~~~--------~~~lL~~~~~~L~pgG~l~i~e 267 (333)
.|+.+++++. ..++++++++.|+|||.+++.-
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 5666666542 1258899999999999988764
No 121
>PHA03411 putative methyltransferase; Provisional
Probab=98.15 E-value=1.6e-05 Score=70.16 Aligned_cols=41 Identities=17% Similarity=0.183 Sum_probs=36.5
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738 191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP 231 (333)
Q Consensus 191 ~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 231 (333)
..+|||+|||+|.++..++++.+..+++++|+ +.+++.+++
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~ 106 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKR 106 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence 46899999999999999999888889999999 889887765
No 122
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.14 E-value=9e-06 Score=73.22 Aligned_cols=40 Identities=23% Similarity=0.472 Sum_probs=36.7
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738 192 KQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP 231 (333)
Q Consensus 192 ~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 231 (333)
.+|||+|||+|..+..++..+|+.+++++|+ +.+++.+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~ 156 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEE 156 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence 6899999999999999999999999999999 888877664
No 123
>PLN02366 spermidine synthase
Probab=98.13 E-value=8.9e-06 Score=73.71 Aligned_cols=80 Identities=21% Similarity=0.236 Sum_probs=59.3
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------CCe--------------------E
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------PCM--------------------W 236 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~gv--------------------~ 236 (333)
.+++.+||+||||.|..+..+++..+..+++++|+ +.+++.++++ +.+ .
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 34678999999999999999986533457899999 7788887663 122 4
Q ss_pred EEccCChhH-------HHHHHHHHHHhCCCCcEEEEEe
Q 035738 237 ILHDWNDEH-------CLKLLKNCYKSIPEDGKVIAVE 267 (333)
Q Consensus 237 vLh~~~~~~-------~~~lL~~~~~~L~pgG~l~i~e 267 (333)
|+.+.+++. ...+++.+++.|+|||.+++.-
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 455554421 2468999999999999987643
No 124
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.10 E-value=2.5e-05 Score=68.20 Aligned_cols=81 Identities=14% Similarity=0.130 Sum_probs=60.6
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC---CC----e-----------------------
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH---PC----M----------------------- 235 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~---~g----v----------------------- 235 (333)
..++.+|||||||+|..+..++...| +.+++.+|. +..++.|+++ .| +
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 45688999999999999999998765 689999999 7888877653 11 1
Q ss_pred -EEEccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738 236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 236 -~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
.++-+-..+.-..++..+.+.|+|||.+++-+.
T Consensus 146 D~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 146 DFAFVDADKPNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 233233334456889999999999997665443
No 125
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.09 E-value=5.7e-06 Score=63.89 Aligned_cols=76 Identities=16% Similarity=0.237 Sum_probs=56.6
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe--------------------EEEccCC-
Q 035738 192 KQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM--------------------WILHDWN- 242 (333)
Q Consensus 192 ~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv--------------------~vLh~~~- 242 (333)
.+|||+|||+|.++..+++.. ..+++++|+ |..++.++.+ ..+ .|+.+.|
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 589999999999999999998 889999999 8887776542 111 3333221
Q ss_pred ----------hhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738 243 ----------DEHCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 243 ----------~~~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
.+....+++++.+.|+|||.++++-+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 11235789999999999999988643
No 126
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.09 E-value=1.2e-05 Score=69.43 Aligned_cols=77 Identities=14% Similarity=0.167 Sum_probs=57.2
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC----C--CCe---------------------EEEccCCh
Q 035738 192 KQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP----H--PCM---------------------WILHDWND 243 (333)
Q Consensus 192 ~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~--~gv---------------------~vLh~~~~ 243 (333)
..+||||||.|.+...+++++|+..++|+++ ..++..+-+ . .++ .|.-++||
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 5799999999999999999999999999998 555443322 1 132 33334444
Q ss_pred hH-----------HHHHHHHHHHhCCCCcEEEEEee
Q 035738 244 EH-----------CLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 244 ~~-----------~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
+. ....|+.+.+.|+|||.|.+..-
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 32 13689999999999999887654
No 127
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.02 E-value=2.4e-05 Score=57.88 Aligned_cols=72 Identities=19% Similarity=0.305 Sum_probs=53.3
Q ss_pred eEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCC----CC--CC------------------e------EEEccC
Q 035738 193 QLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVP----PH--PC------------------M------WILHDW 241 (333)
Q Consensus 193 ~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~~--~g------------------v------~vLh~~ 241 (333)
+++|+|||+|..+..+++ .+..+++++|. +..++.++ .. .. . .+++.+
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999988 77889999998 66655444 10 00 0 222221
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEE
Q 035738 242 NDEHCLKLLKNCYKSIPEDGKVIAV 266 (333)
Q Consensus 242 ~~~~~~~lL~~~~~~L~pgG~l~i~ 266 (333)
.+....+++.+.+.|+|||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 345678999999999999999876
No 128
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.98 E-value=3.5e-05 Score=66.25 Aligned_cols=83 Identities=11% Similarity=0.134 Sum_probs=57.1
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe-----------------
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM----------------- 235 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv----------------- 235 (333)
.++..+. ..+..+|||||||+|..+..+++... +++++|. +.+++.++++ .++
T Consensus 69 ~l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 145 (212)
T PRK00312 69 RMTELLE-LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPF 145 (212)
T ss_pred HHHHhcC-CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCc
Confidence 3444444 66778999999999999987777653 7899998 7777766542 122
Q ss_pred -EEEccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738 236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 236 -~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
.|+-+. .+..+.+.+.+.|+|||++++.-.
T Consensus 146 D~I~~~~---~~~~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 146 DRILVTA---AAPEIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CEEEEcc---CchhhhHHHHHhcCCCcEEEEEEc
Confidence 111111 123567888999999999888644
No 129
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=97.96 E-value=7.7e-05 Score=66.85 Aligned_cols=40 Identities=23% Similarity=0.427 Sum_probs=37.5
Q ss_pred eEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738 193 QLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH 232 (333)
Q Consensus 193 ~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~ 232 (333)
+|||+|||+|..+..++.++|++++++.|+ |.+++.|+++
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~N 153 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALAREN 153 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHH
Confidence 899999999999999999999999999999 8899888764
No 130
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.95 E-value=2.4e-05 Score=68.39 Aligned_cols=112 Identities=13% Similarity=0.218 Sum_probs=81.1
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHH-HCCCCeEEEeec-hhHhhhCCCC------C-Ce--------------
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITT-KYPYIKGINFDL-PHVIEHVPPH------P-CM-------------- 235 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~~------~-gv-------------- 235 (333)
..++..++ ..++.+|||.|.|+|.++..|+. -.|.-+++.+|. ++..+.|+++ . .+
T Consensus 30 ~~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~ 108 (247)
T PF08704_consen 30 SYILMRLD-IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE 108 (247)
T ss_dssp HHHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred HHHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence 34555565 88999999999999999999996 578899999998 7888777653 1 11
Q ss_pred -------EEEccCChhHHHHHHHHHHHhC-CCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHH
Q 035738 236 -------WILHDWNDEHCLKLLKNCYKSI-PEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMT 307 (333)
Q Consensus 236 -------~vLh~~~~~~~~~lL~~~~~~L-~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ 307 (333)
.|+=|++++. ..+..+.++| +|||++.+.-++... .....+
T Consensus 109 ~~~~~~DavfLDlp~Pw--~~i~~~~~~L~~~gG~i~~fsP~ieQ-----------------------------v~~~~~ 157 (247)
T PF08704_consen 109 ELESDFDAVFLDLPDPW--EAIPHAKRALKKPGGRICCFSPCIEQ-----------------------------VQKTVE 157 (247)
T ss_dssp T-TTSEEEEEEESSSGG--GGHHHHHHHE-EEEEEEEEEESSHHH-----------------------------HHHHHH
T ss_pred cccCcccEEEEeCCCHH--HHHHHHHHHHhcCCceEEEECCCHHH-----------------------------HHHHHH
Confidence 5666778777 8999999999 899999998875431 123355
Q ss_pred HHHhCCCCeeEEeec
Q 035738 308 LATGAGFSGISCERA 322 (333)
Q Consensus 308 ll~~aGf~~~~~~~~ 322 (333)
.|++.||..+++..+
T Consensus 158 ~L~~~gf~~i~~~Ev 172 (247)
T PF08704_consen 158 ALREHGFTDIETVEV 172 (247)
T ss_dssp HHHHTTEEEEEEEEE
T ss_pred HHHHCCCeeeEEEEE
Confidence 667789988877654
No 131
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.92 E-value=2.1e-05 Score=67.76 Aligned_cols=111 Identities=18% Similarity=0.175 Sum_probs=78.8
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCC--CC--------C--------Ce-------------
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVP--PH--------P--------CM------------- 235 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~--~~--------~--------gv------------- 235 (333)
.....+||+.|||.|.-+..|+++ +.+++++|+ +.+++.+. .. . +|
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 556789999999999999999986 358999999 77887751 10 0 11
Q ss_pred -----------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCC--cCCH
Q 035738 236 -----------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGK--ERTR 302 (333)
Q Consensus 236 -----------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~--~rt~ 302 (333)
.+|+-++++...+..+.+.+.|+|||+++++....+.... .|. ..+.
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~--------------------~GPPf~v~~ 172 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEM--------------------EGPPFSVTE 172 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCS--------------------SSSS----H
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCC--------------------CCcCCCCCH
Confidence 4566778888999999999999999996555554332110 121 2357
Q ss_pred HHHHHHHHhCCCCeeEEee
Q 035738 303 HEFMTLATGAGFSGISCER 321 (333)
Q Consensus 303 ~e~~~ll~~aGf~~~~~~~ 321 (333)
+++.+++. .+|++..+..
T Consensus 173 ~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 173 EEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp HHHHHHHT-TTEEEEEEEE
T ss_pred HHHHHHhc-CCcEEEEEec
Confidence 89999998 8888776654
No 132
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.91 E-value=2.9e-05 Score=69.37 Aligned_cols=78 Identities=28% Similarity=0.354 Sum_probs=57.3
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------CCe-------------------EEE
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------PCM-------------------WIL 238 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~gv-------------------~vL 238 (333)
+++.+||+||||+|..+..+++..+..+++++|+ +.+++.++++ +.+ .|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 3556999999999999999988766678999999 7887776642 111 222
Q ss_pred ccCCh-----hH--HHHHHHHHHHhCCCCcEEEEE
Q 035738 239 HDWND-----EH--CLKLLKNCYKSIPEDGKVIAV 266 (333)
Q Consensus 239 h~~~~-----~~--~~~lL~~~~~~L~pgG~l~i~ 266 (333)
.+.++ .. ..+.++.+++.|+|||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 22221 11 347889999999999999886
No 133
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.89 E-value=7.7e-05 Score=64.76 Aligned_cols=119 Identities=15% Similarity=0.192 Sum_probs=75.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------C------Ce----EEEccCChhHHHH
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------P------CM----WILHDWNDEHCLK 248 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~------gv----~vLh~~~~~~~~~ 248 (333)
+..++||||.|-|..+..++..+.++.+ -+. +.|....++. . ++ |+|-...++. .
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~a--TE~S~~Mr~rL~~kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P~--~ 169 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYA--TEASPPMRWRLSKKGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRPL--T 169 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEe--ecCCHHHHHHHHhCCCeEEehhhhhccCCceEEEeehhhhhccCCHH--H
Confidence 4678999999999999999999987444 466 5666555432 0 11 5665545554 8
Q ss_pred HHHHHHHhCCCCcEEEEEeeecC-----CCC--CCccccccccchhhHHHhhCCCCC--cCCHHHHHHHHHhCCCCeeEE
Q 035738 249 LLKNCYKSIPEDGKVIAVELMLP-----EVP--NTSIESKSNSDSDVLMMIQSPGGK--ERTRHEFMTLATGAGFSGISC 319 (333)
Q Consensus 249 lL~~~~~~L~pgG~l~i~e~~~~-----~~~--~~~~~~~~~~~~d~~m~~~~~~g~--~rt~~e~~~ll~~aGf~~~~~ 319 (333)
+|+.++++|+|+|++++.=-..- ... ..++.+ .++ + .|. +-..+.+.+.|+.+||++++.
T Consensus 170 LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e----~l~--~-----~g~~~E~~v~~l~~v~~p~GF~v~~~ 238 (265)
T PF05219_consen 170 LLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSE----LLP--V-----KGATFEEQVSSLVNVFEPAGFEVERW 238 (265)
T ss_pred HHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchh----hcC--C-----CCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 99999999999998877543221 111 000001 011 0 121 112334458899999999998
Q ss_pred eecC
Q 035738 320 ERAI 323 (333)
Q Consensus 320 ~~~~ 323 (333)
...+
T Consensus 239 tr~P 242 (265)
T PF05219_consen 239 TRLP 242 (265)
T ss_pred eccC
Confidence 7765
No 134
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=97.88 E-value=5.8e-05 Score=71.96 Aligned_cols=87 Identities=16% Similarity=0.181 Sum_probs=62.5
Q ss_pred hhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CC--e--------------------E
Q 035738 183 ESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PC--M--------------------W 236 (333)
Q Consensus 183 ~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~g--v--------------------~ 236 (333)
..++ ..++.+|||+|||+|..+..+++..++.+++++|+ +.+++.++++ .| + .
T Consensus 238 ~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~ 316 (427)
T PRK10901 238 TLLA-PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDR 316 (427)
T ss_pred HHcC-CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCE
Confidence 3444 55678999999999999999999988789999999 7777665432 00 0 2
Q ss_pred EEcc------------------CChhH-------HHHHHHHHHHhCCCCcEEEEEeeec
Q 035738 237 ILHD------------------WNDEH-------CLKLLKNCYKSIPEDGKVIAVELML 270 (333)
Q Consensus 237 vLh~------------------~~~~~-------~~~lL~~~~~~L~pgG~l~i~e~~~ 270 (333)
|+-+ ..+++ ..++|+++.+.|+|||++++.....
T Consensus 317 Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 317 ILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred EEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 2211 11111 2379999999999999999877533
No 135
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=97.86 E-value=8.6e-05 Score=61.45 Aligned_cols=50 Identities=10% Similarity=0.298 Sum_probs=39.9
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP 231 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 231 (333)
..+++.++ ..+..+|||||||+|.++..++++ ..+++++|+ +.+++.+++
T Consensus 3 ~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~ 53 (169)
T smart00650 3 DKIVRAAN-LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLRE 53 (169)
T ss_pred HHHHHhcC-CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHH
Confidence 34555555 667789999999999999999988 468999999 778776654
No 136
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.85 E-value=8.8e-05 Score=67.66 Aligned_cols=87 Identities=14% Similarity=0.187 Sum_probs=58.5
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hhHhhhCCCC------CCeEEEc-cC----C----
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPY-IKGINFDL-PHVIEHVPPH------PCMWILH-DW----N---- 242 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~gv~vLh-~~----~---- 242 (333)
.++..++ ..+..+|||||||+|.++..+++..+. .+++++|. +.+++.|++. .++.+.+ +. .
T Consensus 71 ~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~ 149 (322)
T PRK13943 71 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAP 149 (322)
T ss_pred HHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCC
Confidence 3444444 667789999999999999999998864 57899999 7887766542 1221111 10 0
Q ss_pred ------hhHHHHHHHHHHHhCCCCcEEEEEe
Q 035738 243 ------DEHCLKLLKNCYKSIPEDGKVIAVE 267 (333)
Q Consensus 243 ------~~~~~~lL~~~~~~L~pgG~l~i~e 267 (333)
+..+..+...+.+.|+|||++++..
T Consensus 150 fD~Ii~~~g~~~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 150 YDVIFVTVGVDEVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccEEEECCchHHhHHHHHHhcCCCCEEEEEe
Confidence 0011245667788999999988854
No 137
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=97.84 E-value=4.7e-05 Score=72.57 Aligned_cols=90 Identities=12% Similarity=0.166 Sum_probs=64.5
Q ss_pred HHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CCe---------------------
Q 035738 181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PCM--------------------- 235 (333)
Q Consensus 181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~gv--------------------- 235 (333)
+...++ ..++.+|||+|||+|..+..+++..++.+++++|+ +..++.++++ .|+
T Consensus 230 ~~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~ 308 (426)
T TIGR00563 230 VATWLA-PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENE 308 (426)
T ss_pred HHHHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccccc
Confidence 333444 55678999999999999999999888889999999 7777655422 010
Q ss_pred --------------EEEccCCh-------hH-------HHHHHHHHHHhCCCCcEEEEEeeecC
Q 035738 236 --------------WILHDWND-------EH-------CLKLLKNCYKSIPEDGKVIAVELMLP 271 (333)
Q Consensus 236 --------------~vLh~~~~-------~~-------~~~lL~~~~~~L~pgG~l~i~e~~~~ 271 (333)
.+++..++ ++ ..++|+++.+.|+|||+++.......
T Consensus 309 ~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 309 QFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred ccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 12222221 11 24799999999999999999887553
No 138
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.82 E-value=2e-05 Score=72.06 Aligned_cols=132 Identities=17% Similarity=0.116 Sum_probs=80.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------------C-----------------------
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------------P----------------------- 233 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------~----------------------- 233 (333)
+..+|||+|||.|.=+........ -+++++|+ +..++.|+++ .
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i-~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI-KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCC-CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 678999999999998888777543 46899999 6777766531 0
Q ss_pred -C-----e----EEEccC--ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCC-----------CCC---c----------
Q 035738 234 -C-----M----WILHDW--NDEHCLKLLKNCYKSIPEDGKVIAVELMLPEV-----------PNT---S---------- 277 (333)
Q Consensus 234 -g-----v----~vLh~~--~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~-----------~~~---~---------- 277 (333)
+ + ..||+. +++.+..+|+++.+.|+|||+++.+-+....- ... +
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~ 220 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRLREKKSNSEKKKFGNSVYSIEFDSD 220 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC-EEECCCSCSETSSEEEEESCC
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHHHhhcccccccccCCccEEEEeccc
Confidence 0 0 556753 56677889999999999999999887732110 000 0
Q ss_pred -cccccccchhhHHHhhCCCCC--cCCHHHHHHHHHhCCCCeeEEeec
Q 035738 278 -IESKSNSDSDVLMMIQSPGGK--ERTRHEFMTLATGAGFSGISCERA 322 (333)
Q Consensus 278 -~~~~~~~~~d~~m~~~~~~g~--~rt~~e~~~ll~~aGf~~~~~~~~ 322 (333)
....+...+.+.+.....+-. ....+.+.+++++.||+.+.....
T Consensus 221 ~~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~eyGLeLV~~~~F 268 (331)
T PF03291_consen 221 DFFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAKEYGLELVEKKNF 268 (331)
T ss_dssp SS--CTTEEEEEEETTCSSCEEEE---HHHHHHHHHHTTEEEEEEEEH
T ss_pred CCCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHHHcCCEEEEeCCh
Confidence 001122222222221110111 125789999999999998876554
No 139
>PLN02476 O-methyltransferase
Probab=97.81 E-value=0.00041 Score=61.70 Aligned_cols=82 Identities=10% Similarity=0.106 Sum_probs=62.2
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC---CCe---------------------------
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH---PCM--------------------------- 235 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~---~gv--------------------------- 235 (333)
..++.+|||||+++|..+..++...| +.+++.+|. +...+.|+++ .|+
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 55789999999999999999998875 668899999 7788877654 221
Q ss_pred -EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738 236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELM 269 (333)
Q Consensus 236 -~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~ 269 (333)
.++-+-+...-...++.+.+.|+|||.|++-+..
T Consensus 196 D~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~DNvL 230 (278)
T PLN02476 196 DFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNVL 230 (278)
T ss_pred CEEEECCCHHHHHHHHHHHHHhcCCCcEEEEecCc
Confidence 3333444455678899999999999986664443
No 140
>PLN02672 methionine S-methyltransferase
Probab=97.78 E-value=0.00012 Score=76.08 Aligned_cols=40 Identities=25% Similarity=0.297 Sum_probs=36.3
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCC
Q 035738 191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVP 230 (333)
Q Consensus 191 ~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~ 230 (333)
..+|||+|||+|..+..+++++|+.+++++|+ |.+++.|+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~ 159 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAW 159 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence 46899999999999999999999999999999 88887763
No 141
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.75 E-value=0.00011 Score=66.83 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=37.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP 231 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 231 (333)
...++||||||+|.....++.+.++.+++++|+ +.+++.|++
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~ 156 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQA 156 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH
Confidence 467999999999999999988899999999999 888888765
No 142
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.74 E-value=3.9e-05 Score=64.89 Aligned_cols=80 Identities=14% Similarity=0.179 Sum_probs=57.7
Q ss_pred CCCCeEEEEcCCccH----HHHHHHHH----CC-CCeEEEeec-hhHhhhCCCC----------C------------C--
Q 035738 189 DNIKQLVDVGGGIGV----TLQAITTK----YP-YIKGINFDL-PHVIEHVPPH----------P------------C-- 234 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~----~~~~l~~~----~p-~~~~~~~D~-~~~~~~a~~~----------~------------g-- 234 (333)
.+..+|...||+||. +++.+.+. .+ +.++++.|+ +.+++.|++- | +
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 367899999999996 33333341 22 467899999 8899988741 0 0
Q ss_pred --e-------------------------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738 235 --M-------------------------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 235 --v-------------------------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
| +||-+++++...+++++++++|+|||.|++-..
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 0 788899999999999999999999999998654
No 143
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.72 E-value=0.00049 Score=59.62 Aligned_cols=134 Identities=12% Similarity=0.050 Sum_probs=75.3
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhh-hCCCCCCe------EE-------------
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIE-HVPPHPCM------WI------------- 237 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~-~a~~~~gv------~v------------- 237 (333)
..+++.++..-...++||+|||+|.++..+++. +..+++++|. +.++. ..++++.+ ++
T Consensus 64 ~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~ 142 (228)
T TIGR00478 64 KEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFA 142 (228)
T ss_pred HHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCce
Confidence 345555541235679999999999999999986 4467999999 54544 34444332 11
Q ss_pred EccCChhHHHHHHHHHHHhCCCCcEEE-EEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCe
Q 035738 238 LHDWNDEHCLKLLKNCYKSIPEDGKVI-AVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSG 316 (333)
Q Consensus 238 Lh~~~~~~~~~lL~~~~~~L~pgG~l~-i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~ 316 (333)
-+|.+=--...+|..+.+.|+| |.++ ++.+-..-.+.. ...-....|-.. ...-.+++..++.+.||++
T Consensus 143 ~~DvsfiS~~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~--~~~~giv~~~~~-------~~~~~~~~~~~~~~~~~~~ 212 (228)
T TIGR00478 143 TFDVSFISLISILPELDLLLNP-NDLTLLFKPQFEAGREK--KNKKGVVRDKEA-------IALALHKVIDKGESPDFQE 212 (228)
T ss_pred eeeEEEeehHhHHHHHHHHhCc-CeEEEEcChHhhhcHhh--cCcCCeecCHHH-------HHHHHHHHHHHHHcCCCeE
Confidence 1111101123579999999999 5444 443322221100 000000001000 1112567778888899998
Q ss_pred eEEeecC
Q 035738 317 ISCERAI 323 (333)
Q Consensus 317 ~~~~~~~ 323 (333)
..+.+.+
T Consensus 213 ~~~~~s~ 219 (228)
T TIGR00478 213 KKIIFSL 219 (228)
T ss_pred eeEEECC
Confidence 8887654
No 144
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.71 E-value=0.00013 Score=65.11 Aligned_cols=78 Identities=28% Similarity=0.439 Sum_probs=65.2
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------CCe-------------------EEE
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------PCM-------------------WIL 238 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~gv-------------------~vL 238 (333)
+++++||-||||.|.++.++++..+--+++.+|+ |.+++.++++ |.+ -|+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 3457999999999999999999999889999999 8999999875 111 666
Q ss_pred ccCChhH-------HHHHHHHHHHhCCCCcEEEEE
Q 035738 239 HDWNDEH-------CLKLLKNCYKSIPEDGKVIAV 266 (333)
Q Consensus 239 h~~~~~~-------~~~lL~~~~~~L~pgG~l~i~ 266 (333)
.+.+|+. -...++.|+++|+++|.++..
T Consensus 155 ~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 155 VDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 7766651 247999999999999999988
No 145
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.69 E-value=0.00035 Score=62.56 Aligned_cols=79 Identities=11% Similarity=0.123 Sum_probs=59.9
Q ss_pred CCCeEEEEcCCccH----HHHHHHHHCC----CCeEEEeec-hhHhhhCCCC--C------------------------C
Q 035738 190 NIKQLVDVGGGIGV----TLQAITTKYP----YIKGINFDL-PHVIEHVPPH--P------------------------C 234 (333)
Q Consensus 190 ~~~~vlDVGgG~G~----~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~--~------------------------g 234 (333)
+..+|...||+||. .++.+.+..+ ++++++.|+ +.+++.|++- + +
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 34799999999996 3334444432 467899999 7888887641 0 1
Q ss_pred ---e--------------------------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738 235 ---M--------------------------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 235 ---v--------------------------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
| ++|.+++++...+++++++++|+|||.|++-..
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~s 263 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHS 263 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence 1 788888888889999999999999998776543
No 146
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=97.69 E-value=0.00017 Score=69.20 Aligned_cols=44 Identities=14% Similarity=0.112 Sum_probs=37.0
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCCC
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVPP 231 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~ 231 (333)
..+..+|||+|||+|..+..+++.. ++.+++++|+ +..++.+++
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~ 293 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEE 293 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Confidence 5567899999999999999999876 6789999999 777766543
No 147
>PRK00536 speE spermidine synthase; Provisional
Probab=97.68 E-value=0.00012 Score=64.46 Aligned_cols=77 Identities=12% Similarity=0.072 Sum_probs=60.6
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------CCe---------------EEEccC
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------PCM---------------WILHDW 241 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~gv---------------~vLh~~ 241 (333)
-.++.+||-||||-|..++++++. |. +++.+|+ +.|++.++++ |.+ -|+.+-
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~~~~fDVIIvDs 147 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIICLQ 147 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhccCCcCCEEEEcC
Confidence 357899999999999999999996 54 9999999 7899988874 222 444553
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738 242 NDEHCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 242 ~~~~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
+.+ ....+.++++|+|||.++..-.
T Consensus 148 ~~~--~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 148 EPD--IHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred CCC--hHHHHHHHHhcCCCcEEEECCC
Confidence 333 2688999999999999888653
No 148
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=9.4e-05 Score=62.43 Aligned_cols=87 Identities=10% Similarity=0.262 Sum_probs=59.7
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCeEEEc-----cCChh--
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCMWILH-----DWNDE-- 244 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv~vLh-----~~~~~-- 244 (333)
..++..+. .++..+|||||||+|..+.-+++--. +++.+++ +...+.|+++ .+|.+.| -|+..
T Consensus 62 A~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aP 138 (209)
T COG2518 62 ARMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAP 138 (209)
T ss_pred HHHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCC
Confidence 34556666 88899999999999999999888765 7888898 7888888763 2331111 11110
Q ss_pred --------HHHHHHHHHHHhCCCCcEEEEEee
Q 035738 245 --------HCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 245 --------~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
.+..+=+.+.+-|+|||++++-.-
T Consensus 139 yD~I~Vtaaa~~vP~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 139 YDRIIVTAAAPEVPEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred cCEEEEeeccCCCCHHHHHhcccCCEEEEEEc
Confidence 011233455578999999999877
No 149
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.66 E-value=0.00046 Score=61.06 Aligned_cols=79 Identities=14% Similarity=0.162 Sum_probs=65.0
Q ss_pred CCCeEEEEcCCccH----HHHHHHHHCC-----CCeEEEeec-hhHhhhCCCC--C------Ce----------------
Q 035738 190 NIKQLVDVGGGIGV----TLQAITTKYP-----YIKGINFDL-PHVIEHVPPH--P------CM---------------- 235 (333)
Q Consensus 190 ~~~~vlDVGgG~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~--~------gv---------------- 235 (333)
+..+|.-.||+||. .++.+.+.+| .+++++.|+ ..+++.|+.- + ++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 57899999999995 6666777776 478899999 7899988751 1 00
Q ss_pred ----------------------------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738 236 ----------------------------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 236 ----------------------------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
|||-+++.+.-.+++++.+..|+|||.|++=..
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 888889988888999999999999999998654
No 150
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.65 E-value=0.0004 Score=59.98 Aligned_cols=81 Identities=7% Similarity=0.020 Sum_probs=64.1
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC----------------CC--C--------------
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP----------------HP--C-------------- 234 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------~~--g-------------- 234 (333)
..+..+||+.|||.|.-+..|++.. .+++++|+ +..++.+.+ +. +
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~G--~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~ 118 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSKG--VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI 118 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhCC--CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc
Confidence 3456799999999999999998864 46999999 777776411 00 0
Q ss_pred ------e------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 035738 235 ------M------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELML 270 (333)
Q Consensus 235 ------v------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~ 270 (333)
+ .+|+.++++...+..+.+.+.|+|||+++++....
T Consensus 119 ~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 119 ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence 0 66777888889999999999999999999987643
No 151
>PLN02823 spermine synthase
Probab=97.65 E-value=0.00017 Score=66.15 Aligned_cols=78 Identities=19% Similarity=0.253 Sum_probs=60.4
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------CCe-------------------EEE
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------PCM-------------------WIL 238 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~gv-------------------~vL 238 (333)
.++.+||.||||.|..+..+++..+..+++++|+ |.+++.++++ +.+ -|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 3578999999999999999998776778999999 8899988754 122 556
Q ss_pred ccCChhH---------HHHHHH-HHHHhCCCCcEEEEE
Q 035738 239 HDWNDEH---------CLKLLK-NCYKSIPEDGKVIAV 266 (333)
Q Consensus 239 h~~~~~~---------~~~lL~-~~~~~L~pgG~l~i~ 266 (333)
.+.+++. -.+.++ .+++.|+|||.+++.
T Consensus 182 ~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 182 GDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred ecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 6655431 236787 899999999987764
No 152
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.65 E-value=9.9e-05 Score=71.73 Aligned_cols=37 Identities=16% Similarity=0.225 Sum_probs=32.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHh
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVI 226 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~ 226 (333)
....+||||||.|.++..+++.+|+..++|+|. ...+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~ 384 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGV 384 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHH
Confidence 456899999999999999999999999999998 4433
No 153
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=97.64 E-value=0.00031 Score=67.33 Aligned_cols=52 Identities=12% Similarity=0.141 Sum_probs=40.9
Q ss_pred HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH 232 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~ 232 (333)
...+++.+. .....+|||+|||+|.++..+++.. .+++++|+ +.+++.|+++
T Consensus 286 ~~~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n 338 (443)
T PRK13168 286 VARALEWLD-PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERAREN 338 (443)
T ss_pred HHHHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHH
Confidence 344444444 4566799999999999999999876 57999999 8899888764
No 154
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.64 E-value=0.00024 Score=60.79 Aligned_cols=84 Identities=12% Similarity=0.206 Sum_probs=67.3
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC---CCe-------------------------EE
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH---PCM-------------------------WI 237 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~---~gv-------------------------~v 237 (333)
..++.+||+||.+.|..+..++...| +.+.|.+|. |+.++.|+++ .|+ .|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 56889999999999999999999999 889999999 8899988875 221 45
Q ss_pred EccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 035738 238 LHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLP 271 (333)
Q Consensus 238 Lh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~ 271 (333)
+-+-...+-.+.|..+.+.|+|||.+++-+...+
T Consensus 137 FIDadK~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 137 FIDADKADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred EEeCChhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 5555555567899999999999987665554443
No 155
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.64 E-value=7.3e-05 Score=63.75 Aligned_cols=83 Identities=14% Similarity=0.266 Sum_probs=64.8
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC---CC----e-----------------------
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH---PC----M----------------------- 235 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~---~g----v----------------------- 235 (333)
..++.+||+||+++|..+..+++..| +.+++.+|. |...+.|+++ .| +
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 34688999999999999999999887 589999999 7788777653 11 1
Q ss_pred -EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 035738 236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELML 270 (333)
Q Consensus 236 -~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~ 270 (333)
.|+-+-...+-...+..+.+.|+|||.|++-+...
T Consensus 123 D~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN~l~ 158 (205)
T PF01596_consen 123 DFVFIDADKRNYLEYFEKALPLLRPGGVIIADNVLW 158 (205)
T ss_dssp EEEEEESTGGGHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred eEEEEcccccchhhHHHHHhhhccCCeEEEEccccc
Confidence 56666666777889999999999988766655543
No 156
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.60 E-value=0.00025 Score=64.50 Aligned_cols=87 Identities=10% Similarity=0.153 Sum_probs=63.0
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHC----CCCeEEEeec-hhHhhhCCC------CCCe------------
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKY----PYIKGINFDL-PHVIEHVPP------HPCM------------ 235 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~----p~~~~~~~D~-~~~~~~a~~------~~gv------------ 235 (333)
.++...++ ...+|+|+|||+|.-...|+++. ...+++.+|+ .+.++.+.+ +|.+
T Consensus 68 ~~Ia~~i~---~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 68 SDIAASIP---SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG 144 (319)
T ss_pred HHHHHhcC---CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence 34555443 55689999999999877776655 3467899999 456654422 2221
Q ss_pred --------------------EEEccCChhHHHHHHHHHHH-hCCCCcEEEE-Eee
Q 035738 236 --------------------WILHDWNDEHCLKLLKNCYK-SIPEDGKVIA-VEL 268 (333)
Q Consensus 236 --------------------~vLh~~~~~~~~~lL~~~~~-~L~pgG~l~i-~e~ 268 (333)
..+.+++++++..+|+++++ .|+||+.++| +|.
T Consensus 145 l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~ 199 (319)
T TIGR03439 145 LAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDG 199 (319)
T ss_pred HhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCC
Confidence 56778899999999999999 9999987776 344
No 157
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=97.56 E-value=0.00028 Score=67.73 Aligned_cols=84 Identities=15% Similarity=0.154 Sum_probs=60.4
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC------CCe-----------------EEEcc--
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH------PCM-----------------WILHD-- 240 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~gv-----------------~vLh~-- 240 (333)
...+.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++++ .++ .|+-+
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 44668999999999999998888654 468999999 8888766542 111 23321
Q ss_pred ----------------CChhHH-------HHHHHHHHHhCCCCcEEEEEeeecC
Q 035738 241 ----------------WNDEHC-------LKLLKNCYKSIPEDGKVIAVELMLP 271 (333)
Q Consensus 241 ----------------~~~~~~-------~~lL~~~~~~L~pgG~l~i~e~~~~ 271 (333)
+++++. .++|+++.+.|+|||+++.......
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 222221 3689999999999999999876543
No 158
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=97.54 E-value=7.9e-05 Score=63.72 Aligned_cols=87 Identities=13% Similarity=0.239 Sum_probs=57.0
Q ss_pred HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCCCC------CCe--------------
Q 035738 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVPPH------PCM-------------- 235 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~gv-------------- 235 (333)
...++..+. +.+..+|||||||+|..+..++... +.-+++.+|. +..++.|+++ .+|
T Consensus 61 ~a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 61 VARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred HHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence 345666666 8889999999999999999998864 4456889998 8888887753 122
Q ss_pred ----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738 236 ----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 236 ----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
.|+-...-+ ++=....+.|++||++++--.
T Consensus 140 apfD~I~v~~a~~---~ip~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 140 APFDRIIVTAAVP---EIPEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp -SEEEEEESSBBS---S--HHHHHTEEEEEEEEEEES
T ss_pred CCcCEEEEeeccc---hHHHHHHHhcCCCcEEEEEEc
Confidence 222221111 233456677999999998554
No 159
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=97.54 E-value=0.00037 Score=62.06 Aligned_cols=83 Identities=14% Similarity=0.211 Sum_probs=59.3
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC------CCe------------------EEEcc-
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH------PCM------------------WILHD- 240 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~gv------------------~vLh~- 240 (333)
..++.+|||+|||+|..+..+++... ..+++.+|+ +..++.++++ .++ .||-+
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 45678999999999999999988765 358999999 7777665432 111 23322
Q ss_pred -----------------CChhHH-------HHHHHHHHHhCCCCcEEEEEeeec
Q 035738 241 -----------------WNDEHC-------LKLLKNCYKSIPEDGKVIAVELML 270 (333)
Q Consensus 241 -----------------~~~~~~-------~~lL~~~~~~L~pgG~l~i~e~~~ 270 (333)
|+++.. .++|+++.+.|+|||+|+......
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 333222 469999999999999987665433
No 160
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.52 E-value=0.00014 Score=65.03 Aligned_cols=50 Identities=10% Similarity=0.246 Sum_probs=40.7
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP 231 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 231 (333)
..+++.++ .....+|||||||+|.++..++++.+ +++++|+ +.+++.+++
T Consensus 32 ~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~ 82 (272)
T PRK00274 32 DKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAE 82 (272)
T ss_pred HHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHH
Confidence 34555555 66778999999999999999999976 7899999 888887754
No 161
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=97.46 E-value=0.00058 Score=65.12 Aligned_cols=83 Identities=20% Similarity=0.260 Sum_probs=59.6
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCCCC------CCe-------------------EEEcc
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVPPH------PCM-------------------WILHD 240 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~gv-------------------~vLh~ 240 (333)
..++.+|||+|||+|..+..++... +..+++.+|+ +..++.++++ .++ .||-+
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 5677899999999999999999876 5678999999 7888766542 111 22221
Q ss_pred ------------------CChhH-------HHHHHHHHHHhCCCCcEEEEEeeec
Q 035738 241 ------------------WNDEH-------CLKLLKNCYKSIPEDGKVIAVELML 270 (333)
Q Consensus 241 ------------------~~~~~-------~~~lL~~~~~~L~pgG~l~i~e~~~ 270 (333)
++.++ -.++|.++.+.|+|||+++......
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 11111 1478999999999999977666544
No 162
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.42 E-value=0.00023 Score=59.94 Aligned_cols=40 Identities=20% Similarity=0.385 Sum_probs=33.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP 231 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 231 (333)
...-|||||||+|..+..+...- -..+++|+ |.|++.|.+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~G--h~wiGvDiSpsML~~a~~ 90 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSG--HQWIGVDISPSMLEQAVE 90 (270)
T ss_pred CCcEEEEeccCCCcchheeccCC--ceEEeecCCHHHHHHHHH
Confidence 57889999999999988776644 56899999 999998863
No 163
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.42 E-value=0.00092 Score=59.15 Aligned_cols=50 Identities=14% Similarity=0.296 Sum_probs=39.7
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP 231 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 231 (333)
..+++.++ ..+..+|||||||+|.++..++++++. ++++|. +.+++.+++
T Consensus 19 ~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~~--v~~iE~d~~~~~~l~~ 69 (253)
T TIGR00755 19 QKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAKK--VTAIEIDPRLAEILRK 69 (253)
T ss_pred HHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCCc--EEEEECCHHHHHHHHH
Confidence 45555555 667789999999999999999999864 888898 777766543
No 164
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=97.39 E-value=0.00046 Score=65.98 Aligned_cols=43 Identities=9% Similarity=-0.041 Sum_probs=35.6
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCC
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVP 230 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~ 230 (333)
..++.+|||+|||+|..+..+++... ..+++++|+ +..++.++
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~ 294 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQ 294 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHH
Confidence 55678999999999999999998754 568999999 77776554
No 165
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=97.33 E-value=0.00012 Score=47.75 Aligned_cols=46 Identities=30% Similarity=0.416 Sum_probs=40.0
Q ss_pred hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
+.|++.|.+.+ ++.|+.|||+++|+ +..-+.|+|+.|+..|++.++
T Consensus 6 l~iL~~l~~~~--~~~t~~eia~~~gl----~~stv~r~L~tL~~~g~v~~d 51 (52)
T PF09339_consen 6 LRILEALAESG--GPLTLSEIARALGL----PKSTVHRLLQTLVEEGYVERD 51 (52)
T ss_dssp HHHHHCHHCTB--SCEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHcCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCcCeecC
Confidence 45788888764 57899999999999 999999999999999999985
No 166
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.33 E-value=0.0036 Score=53.07 Aligned_cols=108 Identities=14% Similarity=0.150 Sum_probs=75.5
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC-------C-------Ce----EEEccCChh-HHHHHHH
Q 035738 191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH-------P-------CM----WILHDWNDE-HCLKLLK 251 (333)
Q Consensus 191 ~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~-------gv----~vLh~~~~~-~~~~lL~ 251 (333)
..++|||||=+...... .++-+.++-+|+-...+...+. | ++ -||.+.|++ +.-++|+
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~ 128 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQHPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLR 128 (219)
T ss_pred cceEEeecccCCCCccc---ccCceeeEEeecCCCCCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHH
Confidence 47999999875554433 3556678888983222222211 1 12 788888855 5669999
Q ss_pred HHHHhCCCCcE-----EEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeecC
Q 035738 252 NCYKSIPEDGK-----VIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAI 323 (333)
Q Consensus 252 ~~~~~L~pgG~-----l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 323 (333)
++.+.|+|+|. ++|+-+.. |..|.+..+.+.|.++++..||..++.....
T Consensus 129 r~~~fL~~~g~~~~~~LFlVlP~~----------------------Cv~NSRy~~~~~l~~im~~LGf~~~~~~~~~ 183 (219)
T PF11968_consen 129 RAHKFLKPPGLSLFPSLFLVLPLP----------------------CVTNSRYMTEERLREIMESLGFTRVKYKKSK 183 (219)
T ss_pred HHHHHhCCCCccCcceEEEEeCch----------------------HhhcccccCHHHHHHHHHhCCcEEEEEEecC
Confidence 99999999999 66664411 1237777789999999999999998876553
No 167
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=97.30 E-value=0.00047 Score=61.40 Aligned_cols=80 Identities=19% Similarity=0.210 Sum_probs=59.7
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeech-hHhhhCCCC-------------C--------------------
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLP-HVIEHVPPH-------------P-------------------- 233 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~-------------~-------------------- 233 (333)
.++...++|+|||-|.-+...-++.- -.++++|++ ..++.|++. +
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAgI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~ 193 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAGI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFK 193 (389)
T ss_pred hccccccceeccCCcccHhHhhhhcc-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCC
Confidence 45677899999999988887665442 257999994 557777642 0
Q ss_pred ----Ce----EEEcc-C-ChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738 234 ----CM----WILHD-W-NDEHCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 234 ----gv----~vLh~-~-~~~~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
++ +++|+ | +.+.+..+|+++.+.|+|||.++-+-+
T Consensus 194 dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 194 DPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred CCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 01 77885 3 566778899999999999999887655
No 168
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.22 E-value=0.0032 Score=50.92 Aligned_cols=91 Identities=14% Similarity=0.258 Sum_probs=67.4
Q ss_pred HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hhHhhhCCCC-CCe-------------------
Q 035738 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTK-YPYIKGINFDL-PHVIEHVPPH-PCM------------------- 235 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-~gv------------------- 235 (333)
++.+.+.++ +..+.-||++|.|||-++.+++.+ .++-..+.++. ++......+. +++
T Consensus 37 A~~M~s~I~-pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~g 115 (194)
T COG3963 37 ARKMASVID-PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKG 115 (194)
T ss_pred HHHHHhccC-cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCC
Confidence 344555566 888889999999999999999875 45566677777 6666554432 321
Q ss_pred ----EE-----EccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738 236 ----WI-----LHDWNDEHCLKLLKNCYKSIPEDGKVIAVELM 269 (333)
Q Consensus 236 ----~v-----Lh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~ 269 (333)
.+ +-+++.....++|+++...|++||.++-+...
T Consensus 116 q~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 116 QFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred CeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 22 23456777889999999999999999988875
No 169
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.17 E-value=0.0024 Score=54.20 Aligned_cols=42 Identities=12% Similarity=0.128 Sum_probs=33.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH 232 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~ 232 (333)
...+|||+|||+|.++..++.+.. .+++++|. +.+++.++++
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~N 95 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKN 95 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHH
Confidence 456999999999999997666553 58999998 7887776653
No 170
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.16 E-value=0.00037 Score=57.96 Aligned_cols=80 Identities=20% Similarity=0.315 Sum_probs=57.7
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCC-------CC------CCe---------------------
Q 035738 191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVP-------PH------PCM--------------------- 235 (333)
Q Consensus 191 ~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~------~gv--------------------- 235 (333)
.-.++|||||.|.++..|...||+.-++|.++ ..|.+..+ .. +++
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 35699999999999999999999999999887 56654332 11 111
Q ss_pred EEEccCChhH-----------HHHHHHHHHHhCCCCcEEEEEeeec
Q 035738 236 WILHDWNDEH-----------CLKLLKNCYKSIPEDGKVIAVELML 270 (333)
Q Consensus 236 ~vLh~~~~~~-----------~~~lL~~~~~~L~pgG~l~i~e~~~ 270 (333)
-.++.++|+. +..++.+..-+|++||.++.+.-+.
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~ 186 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVK 186 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHH
Confidence 3334444432 2358888999999999999887644
No 171
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.11 E-value=0.002 Score=56.48 Aligned_cols=82 Identities=20% Similarity=0.205 Sum_probs=60.6
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC---CCe---------------------------
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH---PCM--------------------------- 235 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~---~gv--------------------------- 235 (333)
..+..+||+||+++|..+..++...| +.+++.+|. +...+.|+++ .|+
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 44678999999999999999998864 788999999 7777777653 221
Q ss_pred --EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 035738 236 --WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELML 270 (333)
Q Consensus 236 --~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~ 270 (333)
.|+-+-....-...++.+.+.|+|||.|++ |.+.
T Consensus 157 fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~-DNvl 192 (247)
T PLN02589 157 FDFIFVDADKDNYINYHKRLIDLVKVGGVIGY-DNTL 192 (247)
T ss_pred ccEEEecCCHHHhHHHHHHHHHhcCCCeEEEE-cCCC
Confidence 333333444556778888999999988555 5544
No 172
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.10 E-value=0.00046 Score=60.71 Aligned_cols=80 Identities=23% Similarity=0.345 Sum_probs=60.4
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------CCe--------------------EE
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------PCM--------------------WI 237 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~gv--------------------~v 237 (333)
+++.+||-||+|.|..+..+++..+..+++++|+ |.+++.++++ +.+ .|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 4789999999999999999998776778999999 8899888753 222 45
Q ss_pred EccCChhH-------HHHHHHHHHHhCCCCcEEEEEee
Q 035738 238 LHDWNDEH-------CLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 238 Lh~~~~~~-------~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
+.+.+++. ....++.+++.|+|||.+++.-.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAG 192 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEcc
Confidence 55554421 24788999999999998887763
No 173
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.09 E-value=0.0026 Score=56.91 Aligned_cols=91 Identities=19% Similarity=0.325 Sum_probs=66.1
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCC-eEEEeec-hhHhhhCCCC----C-------------------
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYI-KGINFDL-PHVIEHVPPH----P------------------- 233 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~----~------------------- 233 (333)
.++....++ -.+.+|||+|+|.|..+-++...++.+ +++.+|. +.+++.++.. +
T Consensus 23 ~El~~r~p~-f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 101 (274)
T PF09243_consen 23 SELRKRLPD-FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP 101 (274)
T ss_pred HHHHHhCcC-CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC
Confidence 444444442 356799999999999998888888854 4688898 7777755431 0
Q ss_pred --Ce----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 035738 234 --CM----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPE 272 (333)
Q Consensus 234 --gv----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~ 272 (333)
++ ++|-.+++....++++++-+.+.+ .|+|+|+-.+.
T Consensus 102 ~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 102 PDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred CCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 11 777777777777888888777766 99999996554
No 174
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=97.05 E-value=0.0013 Score=45.48 Aligned_cols=60 Identities=23% Similarity=0.289 Sum_probs=48.8
Q ss_pred HHHhChhhHhhhcCCCC-CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccc
Q 035738 32 VYELGIFEIIDKAGPGA-KLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNS 100 (333)
Q Consensus 32 a~~lglfd~L~~~~~~g-~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~ 100 (333)
..+-.|+..|.+.| + ++|+.|||+++|+ +...++|.|..|...|+|.... ..++.|.++.
T Consensus 6 ~~~~~IL~~L~~~g--~~~~ta~eLa~~lgl----~~~~v~r~L~~L~~~G~V~~~~---~~~~~W~i~~ 66 (68)
T smart00550 6 SLEEKILEFLENSG--DETSTALQLAKNLGL----PKKEVNRVLYSLEKKGKVCKQG---GTPPLWKLTD 66 (68)
T ss_pred HHHHHHHHHHHHCC--CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecC---CCCCceEeec
Confidence 45667888999874 2 2999999999999 8999999999999999999862 1247787764
No 175
>PRK04148 hypothetical protein; Provisional
Probab=97.05 E-value=0.0068 Score=47.70 Aligned_cols=85 Identities=19% Similarity=0.206 Sum_probs=53.1
Q ss_pred HHHhhccCCCCCCeEEEEcCCccH-HHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----------CCe-------EEEc
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGV-TLQAITTKYPYIKGINFDL-PHVIEHVPPH-----------PCM-------WILH 239 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~gv-------~vLh 239 (333)
.+.+.++ -.+..+++|||||+|. .+..|.+. +..++++|+ |..++.+++. |+. .+..
T Consensus 7 ~l~~~~~-~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liys 83 (134)
T PRK04148 7 FIAENYE-KGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYS 83 (134)
T ss_pred HHHHhcc-cccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEE
Confidence 3445554 3355799999999996 77777754 468999999 8888766543 111 3333
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738 240 DWNDEHCLKLLKNCYKSIPEDGKVIAVELM 269 (333)
Q Consensus 240 ~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~ 269 (333)
--++.+...-+-++++..+- -++|.-..
T Consensus 84 irpp~el~~~~~~la~~~~~--~~~i~~l~ 111 (134)
T PRK04148 84 IRPPRDLQPFILELAKKINV--PLIIKPLS 111 (134)
T ss_pred eCCCHHHHHHHHHHHHHcCC--CEEEEcCC
Confidence 34555555555566665543 35554443
No 176
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.02 E-value=0.0012 Score=58.59 Aligned_cols=50 Identities=18% Similarity=0.309 Sum_probs=39.5
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP 231 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 231 (333)
..+++.+. ..+..+|||||||+|.++..++++. .+++++|+ +.+++.+++
T Consensus 19 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~ 69 (258)
T PRK14896 19 DRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRD 69 (258)
T ss_pred HHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHH
Confidence 44555554 5667899999999999999999984 47899999 777776654
No 177
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=96.99 E-value=0.0011 Score=55.09 Aligned_cols=81 Identities=17% Similarity=0.202 Sum_probs=51.4
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC---------CCe-----------------------
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH---------PCM----------------------- 235 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~---------~gv----------------------- 235 (333)
...+.+|||+|||+|..+..+++.++..+++.-|.+.+++..+.+ ..+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 446789999999999999999998777889999996676654321 111
Q ss_pred ----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 035738 236 ----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELML 270 (333)
Q Consensus 236 ----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~ 270 (333)
.|++ .++....+++.+.+.|+|+|.+++.-...
T Consensus 123 IlasDv~Y--~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLY--DEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S---GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEecccc--hHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 2222 34455678888888888887766666644
No 178
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=96.94 E-value=0.0015 Score=58.73 Aligned_cols=54 Identities=19% Similarity=0.156 Sum_probs=45.7
Q ss_pred HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC
Q 035738 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH 232 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~ 232 (333)
..++++.+. ..+...+||.+||.|.++..+++..| +.+++++|. |.+++.+++.
T Consensus 8 l~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~ 63 (296)
T PRK00050 8 LDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDR 63 (296)
T ss_pred HHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHh
Confidence 456777765 56677999999999999999999986 789999999 8899888653
No 179
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=96.93 E-value=0.0019 Score=56.78 Aligned_cols=79 Identities=18% Similarity=0.184 Sum_probs=59.8
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-C-C---------------------eEEEccCCh
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-P-C---------------------MWILHDWND 243 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~-g---------------------v~vLh~~~~ 243 (333)
.+....++|+|||.|.+.. .+|.+..+++|+ ...+..+++. + + +.++|+++.
T Consensus 43 ~~~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT 118 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLST 118 (293)
T ss_pred cCCcceeeecccCCcccCc----CCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhh
Confidence 3457789999999998765 458888999999 5666666543 1 1 178888764
Q ss_pred h-HHHHHHHHHHHhCCCCcEEEEEeeec
Q 035738 244 E-HCLKLLKNCYKSIPEDGKVIAVELML 270 (333)
Q Consensus 244 ~-~~~~lL~~~~~~L~pgG~l~i~e~~~ 270 (333)
. ...++++++.+.++|||..+|.-...
T Consensus 119 ~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 119 RERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 4 45689999999999999987776643
No 180
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=96.91 E-value=0.015 Score=49.72 Aligned_cols=115 Identities=17% Similarity=0.187 Sum_probs=81.3
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCCC---C-----e--------------------EEE
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPHP---C-----M--------------------WIL 238 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~---g-----v--------------------~vL 238 (333)
.+++.+|||.=.|-|.++.+.+++-. ++++-++- |.|++.|.-+| + + .++
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 55789999999999999999988764 36666666 88988887652 1 1 788
Q ss_pred ccCC------hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhC
Q 035738 239 HDWN------DEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGA 312 (333)
Q Consensus 239 h~~~------~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~a 312 (333)
|+-| +-...++-+++++.|+|||+++=.--... .. ....| -+....+.|+++
T Consensus 211 HDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg----~r-----yrG~d-------------~~~gVa~RLr~v 268 (287)
T COG2521 211 HDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPG----KR-----YRGLD-------------LPKGVAERLRRV 268 (287)
T ss_pred eCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCC----cc-----cccCC-------------hhHHHHHHHHhc
Confidence 8865 23356789999999999999764433211 10 11111 144678899999
Q ss_pred CCCeeEEeecCCc
Q 035738 313 GFSGISCERAIGN 325 (333)
Q Consensus 313 Gf~~~~~~~~~~~ 325 (333)
||.+++......+
T Consensus 269 GF~~v~~~~~~~g 281 (287)
T COG2521 269 GFEVVKKVREALG 281 (287)
T ss_pred Cceeeeeehhccc
Confidence 9998888766543
No 181
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.88 E-value=0.0038 Score=53.22 Aligned_cols=92 Identities=12% Similarity=0.259 Sum_probs=53.5
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------CC-----e--------
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------PC-----M-------- 235 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~g-----v-------- 235 (333)
.+++.+. +.+...++|+|||.|......+..++--+.+|+++ +...+.|+.. .| +
T Consensus 33 ~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl 111 (205)
T PF08123_consen 33 KILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFL 111 (205)
T ss_dssp HHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TT
T ss_pred HHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcc
Confidence 4555555 77788999999999999998887776666999998 6666544321 01 0
Q ss_pred -------------EEE-cc--CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCC
Q 035738 236 -------------WIL-HD--WNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEV 273 (333)
Q Consensus 236 -------------~vL-h~--~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~ 273 (333)
-|+ ++ |+++ ...-|++....||||.+|+...++.+..
T Consensus 112 ~~~~~~~~~s~AdvVf~Nn~~F~~~-l~~~L~~~~~~lk~G~~IIs~~~~~~~~ 164 (205)
T PF08123_consen 112 DPDFVKDIWSDADVVFVNNTCFDPD-LNLALAELLLELKPGARIISTKPFCPRR 164 (205)
T ss_dssp THHHHHHHGHC-SEEEE--TTT-HH-HHHHHHHHHTTS-TT-EEEESS-SS-TT
T ss_pred ccHhHhhhhcCCCEEEEeccccCHH-HHHHHHHHHhcCCCCCEEEECCCcCCCC
Confidence 222 22 3444 4455577778899999988877776654
No 182
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=96.88 E-value=0.0015 Score=47.92 Aligned_cols=58 Identities=19% Similarity=0.267 Sum_probs=47.2
Q ss_pred HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccc
Q 035738 34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSV 101 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~ 101 (333)
-+.|++.|.+.+ ++.|+.|||+.+|+ +..-+.|.|+.|...|++.+.. .++.|++++.
T Consensus 7 ~~~Il~~l~~~~--~~~t~~~ia~~l~i----~~~tv~r~l~~L~~~g~l~~~~----~~~~y~l~~~ 64 (91)
T smart00346 7 GLAVLRALAEEP--GGLTLAELAERLGL----SKSTAHRLLNTLQELGYVEQDG----QNGRYRLGPK 64 (91)
T ss_pred HHHHHHHHHhCC--CCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCeeecC----CCCceeecHH
Confidence 356788887752 48999999999999 9999999999999999999852 2456777653
No 183
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.86 E-value=0.0033 Score=63.79 Aligned_cols=42 Identities=10% Similarity=0.025 Sum_probs=35.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH 232 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~ 232 (333)
+..+|||+|||+|.++..++.. ...+++.+|+ +.+++.++++
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N 580 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERN 580 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHH
Confidence 4679999999999999999985 3347999999 8888887753
No 184
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.85 E-value=0.0048 Score=51.52 Aligned_cols=47 Identities=23% Similarity=0.249 Sum_probs=35.6
Q ss_pred HHHHHhhccCCC--CCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeechh
Q 035738 178 MSNILESYKGFD--NIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDLPH 224 (333)
Q Consensus 178 ~~~~~~~~~~~~--~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~~~ 224 (333)
..++.+.++-++ +..++||+||++|.++..++++. +..+++++|+..
T Consensus 9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~ 58 (181)
T PF01728_consen 9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGP 58 (181)
T ss_dssp HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSS
T ss_pred HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccc
Confidence 345566665233 45899999999999999999988 778899999843
No 185
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=96.83 E-value=0.0037 Score=57.15 Aligned_cols=41 Identities=12% Similarity=0.074 Sum_probs=35.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH 232 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~ 232 (333)
...+|||+|||+|.++..+++. ..+++++|+ +.+++.++++
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n 214 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQS 214 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHH
Confidence 3579999999999999999884 368999999 8899888754
No 186
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=96.83 E-value=0.0042 Score=58.50 Aligned_cols=43 Identities=7% Similarity=-0.038 Sum_probs=34.0
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH 232 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~ 232 (333)
.+..+|||+|||+|.++...+. ....+++.+|+ +.+++.++++
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~-~ga~~V~~VD~s~~al~~a~~N 262 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALM-GGCSQVVSVDTSQEALDIARQN 262 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHh-CCCCEEEEEECCHHHHHHHHHH
Confidence 3568999999999999887654 34458999999 8888877654
No 187
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.80 E-value=0.0012 Score=54.65 Aligned_cols=42 Identities=19% Similarity=0.334 Sum_probs=36.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH 232 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~ 232 (333)
...+|+|+|||||.++...+-..|. +++++|+ |+.++.++++
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~-~V~~vdiD~~a~ei~r~N 87 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGAS-RVLAVDIDPEALEIARAN 87 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCc-EEEEEecCHHHHHHHHHH
Confidence 5678999999999999988776664 7899999 8999998875
No 188
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=96.73 E-value=0.0013 Score=41.86 Aligned_cols=44 Identities=23% Similarity=0.371 Sum_probs=38.9
Q ss_pred HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceee
Q 035738 34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVEC 85 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~ 85 (333)
++.|...|.+ ||.++.||++.+|+ ++..+.+.|+.|...|++++
T Consensus 4 R~~Il~~L~~----~~~~~~el~~~l~~----s~~~vs~hL~~L~~~glV~~ 47 (47)
T PF01022_consen 4 RLRILKLLSE----GPLTVSELAEELGL----SQSTVSHHLKKLREAGLVEK 47 (47)
T ss_dssp HHHHHHHHTT----SSEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHh----CCCchhhHHHhccc----cchHHHHHHHHHHHCcCeeC
Confidence 5667888888 59999999999999 99999999999999999973
No 189
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=96.72 E-value=0.0037 Score=59.79 Aligned_cols=49 Identities=16% Similarity=0.318 Sum_probs=39.1
Q ss_pred HHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738 181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH 232 (333)
Q Consensus 181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~ 232 (333)
+...+. ..+..+|||+|||+|.++..+++.. .+++++|+ +.+++.++++
T Consensus 284 ~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n 333 (431)
T TIGR00479 284 ALEALE-LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQN 333 (431)
T ss_pred HHHHhc-cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHH
Confidence 334333 5566799999999999999999875 37899999 8899888764
No 190
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.69 E-value=0.0012 Score=62.54 Aligned_cols=82 Identities=15% Similarity=0.127 Sum_probs=52.7
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEe-ec-hhHhhhCCC--------------C--C-Ce-------EEEccCC
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINF-DL-PHVIEHVPP--------------H--P-CM-------WILHDWN 242 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~-D~-~~~~~~a~~--------------~--~-gv-------~vLh~~~ 242 (333)
...+++||||||+|.++..++++.=-+-.+.. |. +..++.|.+ . | +. .++..|.
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~ 195 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWH 195 (506)
T ss_pred CceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccch
Confidence 45689999999999999999987521111111 22 122222211 1 1 11 6666777
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 035738 243 DEHCLKLLKNCYKSIPEDGKVIAVELMLP 271 (333)
Q Consensus 243 ~~~~~~lL~~~~~~L~pgG~l~i~e~~~~ 271 (333)
+.+ ..+|-++-|+|+|||.+++.-+-..
T Consensus 196 ~~~-g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 196 PND-GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred hcc-cceeehhhhhhccCceEEecCCccc
Confidence 665 3688899999999999988876443
No 191
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=96.65 E-value=0.0035 Score=53.32 Aligned_cols=120 Identities=22% Similarity=0.222 Sum_probs=76.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC--CCe-------------------------EEEccC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH--PCM-------------------------WILHDW 241 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~gv-------------------------~vLh~~ 241 (333)
.+..++|||||-|.....+..+.- -+.|..|. ..|++.++.. |++ .-||..
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~v-ekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~ 150 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGV-EKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWT 150 (325)
T ss_pred hCcceeecccchhhhhHHHHhcch-hheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhh
Confidence 456899999999999999988872 35788888 6888888764 443 344544
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcC------CHHHHHHHHHhCCCC
Q 035738 242 NDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKER------TRHEFMTLATGAGFS 315 (333)
Q Consensus 242 ~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~r------t~~e~~~ll~~aGf~ 315 (333)
++-. .-+.+|..+|||+|.++-.-..-+. ...+.....+.-+-- .+|-.. ...++-.+|..|||.
T Consensus 151 NdLP--g~m~~ck~~lKPDg~FiasmlggdT------LyELR~slqLAelER-~GGiSphiSPf~qvrDiG~LL~rAGF~ 221 (325)
T KOG2940|consen 151 NDLP--GSMIQCKLALKPDGLFIASMLGGDT------LYELRCSLQLAELER-EGGISPHISPFTQVRDIGNLLTRAGFS 221 (325)
T ss_pred ccCc--hHHHHHHHhcCCCccchhHHhcccc------HHHHHHHhhHHHHHh-ccCCCCCcChhhhhhhhhhHHhhcCcc
Confidence 4433 6788999999999987654332111 111112222222211 133211 246788999999998
Q ss_pred eeEE
Q 035738 316 GISC 319 (333)
Q Consensus 316 ~~~~ 319 (333)
...+
T Consensus 222 m~tv 225 (325)
T KOG2940|consen 222 MLTV 225 (325)
T ss_pred ccee
Confidence 7654
No 192
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.64 E-value=0.01 Score=50.55 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=34.8
Q ss_pred EEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738 194 LVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH 232 (333)
Q Consensus 194 vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~ 232 (333)
|.||||-+|.+...|++.....+++..|+ +..++.|+++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~ 40 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKEN 40 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHH
Confidence 68999999999999999999999999999 8899888753
No 193
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=96.62 E-value=0.0025 Score=43.06 Aligned_cols=54 Identities=17% Similarity=0.263 Sum_probs=45.8
Q ss_pred HHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 26 PMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 26 ~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
..+|.--.++.|++.|... +|.|+.|||+.+|+ ++..+.+-|+.|...|+|+..
T Consensus 4 ~~aL~~p~R~~Il~~L~~~---~~~t~~ela~~l~~----~~~t~s~hL~~L~~aGli~~~ 57 (61)
T PF12840_consen 4 FKALSDPTRLRILRLLASN---GPMTVSELAEELGI----SQSTVSYHLKKLEEAGLIEVE 57 (61)
T ss_dssp HHHHTSHHHHHHHHHHHHC---STBEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhCCHHHHHHHHHHhcC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence 3455566788899999543 59999999999999 999999999999999999986
No 194
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=96.61 E-value=0.003 Score=56.99 Aligned_cols=49 Identities=16% Similarity=0.354 Sum_probs=38.6
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCC
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVP 230 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~ 230 (333)
..+++... .....+|||||||+|.++..+++.. .+++++|+ +.+++.++
T Consensus 26 ~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~ 75 (294)
T PTZ00338 26 DKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELK 75 (294)
T ss_pred HHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHH
Confidence 45555555 6677899999999999999999875 46899999 77777654
No 195
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.0029 Score=53.08 Aligned_cols=78 Identities=13% Similarity=0.145 Sum_probs=54.6
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHH--CCCCeEEEeec-hhHhhhCCCC-------CC---------e-------------
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTK--YPYIKGINFDL-PHVIEHVPPH-------PC---------M------------- 235 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~~-------~g---------v------------- 235 (333)
+.++.+.||||+|+|.++..+..- .+.....++|. |++++.++++ +. +
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 557889999999999999887743 34444478887 8988877653 11 1
Q ss_pred ----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 035738 236 ----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVE 267 (333)
Q Consensus 236 ----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e 267 (333)
+.+|.=. .+.++.+++..-|+|||+++|--
T Consensus 160 ~a~YDaIhvGA--aa~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 160 QAPYDAIHVGA--AASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred cCCcceEEEcc--CccccHHHHHHhhccCCeEEEee
Confidence 3333222 23478889999999999988743
No 196
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.55 E-value=0.025 Score=47.02 Aligned_cols=117 Identities=12% Similarity=0.066 Sum_probs=73.7
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeechhH-----------hhhCCC--CCC----------------e-
Q 035738 187 GFDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDLPHV-----------IEHVPP--HPC----------------M- 235 (333)
Q Consensus 187 ~~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~~~~-----------~~~a~~--~~g----------------v- 235 (333)
+++...+|+|+=.|.|.++..+...- |.-.++.+--.+. -..+++ +.+ +
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d 124 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLD 124 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCccc
Confidence 47889999999999999999888753 4333333211111 111111 011 0
Q ss_pred --------EEEcc--CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHH
Q 035738 236 --------WILHD--WNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEF 305 (333)
Q Consensus 236 --------~vLh~--~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~ 305 (333)
+.+|. +....+.++-+.++++|||||.++|.|.......+... .. .-..++.+-.
T Consensus 125 ~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~d------t~---------~~~ri~~a~V 189 (238)
T COG4798 125 LVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSD------TI---------TLHRIDPAVV 189 (238)
T ss_pred ccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhh------hh---------hhcccChHHH
Confidence 44442 33455678999999999999999999997765433210 00 1113356778
Q ss_pred HHHHHhCCCCeeE
Q 035738 306 MTLATGAGFSGIS 318 (333)
Q Consensus 306 ~~ll~~aGf~~~~ 318 (333)
++..+.+||+..-
T Consensus 190 ~a~veaaGFkl~a 202 (238)
T COG4798 190 IAEVEAAGFKLEA 202 (238)
T ss_pred HHHHHhhcceeee
Confidence 8888999998664
No 197
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=96.55 E-value=0.0044 Score=44.68 Aligned_cols=48 Identities=27% Similarity=0.360 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccc
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVS 102 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~ 102 (333)
++.|.++||+.+++ ++..++++++.|...|+++... | .++.|.++...
T Consensus 24 ~~~s~~eiA~~~~i----~~~~l~kil~~L~~~Gli~s~~--G-~~GGy~L~~~~ 71 (83)
T PF02082_consen 24 KPVSSKEIAERLGI----SPSYLRKILQKLKKAGLIESSR--G-RGGGYRLARPP 71 (83)
T ss_dssp C-BEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEET--S-TTSEEEESS-C
T ss_pred CCCCHHHHHHHHCc----CHHHHHHHHHHHhhCCeeEecC--C-CCCceeecCCH
Confidence 46999999999999 9999999999999999998763 3 35778877543
No 198
>PHA03412 putative methyltransferase; Provisional
Probab=96.55 E-value=0.0024 Score=55.27 Aligned_cols=42 Identities=17% Similarity=0.052 Sum_probs=36.2
Q ss_pred CCeEEEEcCCccHHHHHHHHHC---CCCeEEEeec-hhHhhhCCCC
Q 035738 191 IKQLVDVGGGIGVTLQAITTKY---PYIKGINFDL-PHVIEHVPPH 232 (333)
Q Consensus 191 ~~~vlDVGgG~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~ 232 (333)
..+|||+|||+|.++..++++. +..+++++|+ +.+++.|+++
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n 95 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRI 95 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhh
Confidence 5699999999999999998874 4678999999 8888888764
No 199
>COG1414 IclR Transcriptional regulator [Transcription]
Probab=96.51 E-value=0.0029 Score=55.67 Aligned_cols=58 Identities=22% Similarity=0.334 Sum_probs=48.6
Q ss_pred hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccc
Q 035738 35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVS 102 (333)
Q Consensus 35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~ 102 (333)
+.|++.|+..+ +++++.|||+++|+ +..-+.|+|..|+..||+.+++ ++++|++++..
T Consensus 7 l~iL~~l~~~~--~~l~l~ela~~~gl----pksT~~RlL~tL~~~G~v~~d~----~~g~Y~Lg~~~ 64 (246)
T COG1414 7 LAILDLLAEGP--GGLSLAELAERLGL----PKSTVHRLLQTLVELGYVEQDP----EDGRYRLGPRL 64 (246)
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEcC----CCCcEeehHHH
Confidence 56788888743 34679999999999 9999999999999999999982 35689998654
No 200
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=96.47 E-value=0.0037 Score=54.63 Aligned_cols=43 Identities=16% Similarity=0.275 Sum_probs=37.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH 232 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~ 232 (333)
....++|+|||+|..+..++...|+.++|.+|. +.++..|.++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN 191 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKEN 191 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHH
Confidence 455899999999999999999999999999999 6777766543
No 201
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.024 Score=50.56 Aligned_cols=123 Identities=19% Similarity=0.212 Sum_probs=90.5
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHC--CCCeEEEeechhHhhhCCCC---C------------Ce---------------
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKY--PYIKGINFDLPHVIEHVPPH---P------------CM--------------- 235 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~--p~~~~~~~D~~~~~~~a~~~---~------------gv--------------- 235 (333)
.+...+|+.+|||.-.....+...+ +.++++-+|.|.+++.--.. + ++
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~ 164 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL 164 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence 5678899999999999999999987 78889999998776532210 0 00
Q ss_pred -------------------------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCcccccccc
Q 035738 236 -------------------------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNS 284 (333)
Q Consensus 236 -------------------------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~ 284 (333)
.+|.+.+++.+..+++-+.+.++- +.+++.|.+.+.++
T Consensus 165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~-a~fv~YEQi~~~D~---------- 233 (335)
T KOG2918|consen 165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFEN-AHFVNYEQINPNDR---------- 233 (335)
T ss_pred eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCc-ccEEEEeccCCCCh----------
Confidence 788888999999999999887754 67889999886542
Q ss_pred chhhHHHhhCC-CC-------CcCCHHHHHHHHHhCCCCeeEEeec
Q 035738 285 DSDVLMMIQSP-GG-------KERTRHEFMTLATGAGFSGISCERA 322 (333)
Q Consensus 285 ~~d~~m~~~~~-~g-------~~rt~~e~~~ll~~aGf~~~~~~~~ 322 (333)
+.-.|..++. .| ...|.+..++-+.++||+.+.+..+
T Consensus 234 -Fg~vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 234 -FGKVMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM 278 (335)
T ss_pred -HHHHHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence 2223332210 11 1247889999999999999988765
No 202
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=96.35 E-value=0.0047 Score=39.37 Aligned_cols=45 Identities=16% Similarity=0.348 Sum_probs=38.3
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhccccee
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVE 84 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~ 84 (333)
.+..|++.|.+. +++|..|||+.+|+ +...+.+.++-|...|+++
T Consensus 4 ~~~~Il~~l~~~---~~~t~~ela~~~~i----s~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 4 TQRKILNYLREN---PRITQKELAEKLGI----SRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHHHC---TTS-HHHHHHHHTS-----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCcCcC
Confidence 356788899986 48999999999999 9999999999999999985
No 203
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.28 E-value=0.004 Score=49.71 Aligned_cols=39 Identities=28% Similarity=0.319 Sum_probs=34.1
Q ss_pred eEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738 193 QLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP 231 (333)
Q Consensus 193 ~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 231 (333)
+++|||||.|.++..+++.+|..+++.+|. |.+.+.+++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~ 40 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEE 40 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHH
Confidence 489999999999999999999999999998 777766553
No 204
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.28 E-value=0.0061 Score=48.77 Aligned_cols=43 Identities=21% Similarity=0.361 Sum_probs=35.7
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHH----CCCCeEEEeec-hhHhhhCC
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTK----YPYIKGINFDL-PHVIEHVP 230 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~ 230 (333)
..+..+|+|+|||.|.++..++.. .++++++++|. +..++.+.
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~ 70 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQ 70 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHH
Confidence 467889999999999999999882 37899999998 66666655
No 205
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=96.26 E-value=0.0097 Score=55.76 Aligned_cols=41 Identities=12% Similarity=0.079 Sum_probs=34.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH 232 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~ 232 (333)
...+|||++||+|.++..++.. ..+++++|+ +.+++.++++
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N 274 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQS 274 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHH
Confidence 3468999999999999999854 368999999 8888888764
No 206
>PRK11569 transcriptional repressor IclR; Provisional
Probab=96.13 E-value=0.0063 Score=54.49 Aligned_cols=58 Identities=14% Similarity=0.198 Sum_probs=48.4
Q ss_pred hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccc
Q 035738 35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVS 102 (333)
Q Consensus 35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~ 102 (333)
+.|++.|.+.+ ++.|+.|||+++|+ +..-+.|+|..|+..||+.++. +.++|++.+..
T Consensus 31 l~IL~~l~~~~--~~~~lseia~~lgl----pksTv~RlL~tL~~~G~l~~~~----~~~~Y~lG~~l 88 (274)
T PRK11569 31 LKLLEWIAESN--GSVALTELAQQAGL----PNSTTHRLLTTMQQQGFVRQVG----ELGHWAIGAHA 88 (274)
T ss_pred HHHHHHHHhCC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC----CCCeEecCHHH
Confidence 55677777643 58999999999999 9999999999999999999862 46789987654
No 207
>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.
Probab=96.13 E-value=0.0053 Score=54.10 Aligned_cols=56 Identities=21% Similarity=0.288 Sum_probs=47.3
Q ss_pred hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccc
Q 035738 35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVS 102 (333)
Q Consensus 35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~ 102 (333)
+.|++.|...+ .+.|+.|||+++|+ +..-+.|+|..|+..|+|.++ ++.|++.+..
T Consensus 12 l~IL~~l~~~~--~~~~l~eia~~lgl----pksT~~RlL~tL~~~G~l~~~------~~~Y~lG~~~ 67 (248)
T TIGR02431 12 LAVIEAFGAER--PRLTLTDVAEATGL----TRAAARRFLLTLVELGYVTSD------GRLFWLTPRV 67 (248)
T ss_pred HHHHHHHhcCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC------CCEEEecHHH
Confidence 45777777543 58999999999999 999999999999999999975 5789987654
No 208
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=96.12 E-value=0.0041 Score=42.97 Aligned_cols=47 Identities=23% Similarity=0.265 Sum_probs=41.6
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
.+..++..|-.. |+.|+.|||+.+|+ +...+.+.|+-|...|++.+.
T Consensus 9 ~E~~vy~~Ll~~---~~~t~~eIa~~l~i----~~~~v~~~L~~L~~~GlV~~~ 55 (68)
T PF01978_consen 9 NEAKVYLALLKN---GPATAEEIAEELGI----SRSTVYRALKSLEEKGLVERE 55 (68)
T ss_dssp HHHHHHHHHHHH---CHEEHHHHHHHHTS----SHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 456677777654 59999999999999 999999999999999999987
No 209
>PRK10163 DNA-binding transcriptional repressor AllR; Provisional
Probab=96.12 E-value=0.0065 Score=54.31 Aligned_cols=59 Identities=20% Similarity=0.249 Sum_probs=48.7
Q ss_pred HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccc
Q 035738 34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVS 102 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~ 102 (333)
-+.|++.|...+ .+.|+.|||+++|+ +..-+.|+|..|...|+|.++. +.+.|++....
T Consensus 27 ~l~IL~~~~~~~--~~~tl~eIa~~lgl----pkStv~RlL~tL~~~G~l~~~~----~~~~Y~lG~~l 85 (271)
T PRK10163 27 GIAILQYLEKSG--GSSSVSDISLNLDL----PLSTTFRLLKVLQAADFVYQDS----QLGWWHIGLGV 85 (271)
T ss_pred HHHHHHHHHhCC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC----CCCeEEecHHH
Confidence 355777777653 47999999999999 9999999999999999999862 46789887644
No 210
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.08 E-value=0.087 Score=43.43 Aligned_cols=39 Identities=21% Similarity=0.322 Sum_probs=32.2
Q ss_pred CCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hhHhhhC
Q 035738 191 IKQLVDVGGGIGVTLQAITTK-YPYIKGINFDL-PHVIEHV 229 (333)
Q Consensus 191 ~~~vlDVGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a 229 (333)
+.-++|||||+|..+..|.+. -|++.....|+ |.+++..
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~T 84 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEAT 84 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHH
Confidence 677999999999999888775 47788888899 8877653
No 211
>PRK09834 DNA-binding transcriptional activator MhpR; Provisional
Probab=96.02 E-value=0.0084 Score=53.34 Aligned_cols=61 Identities=13% Similarity=0.131 Sum_probs=49.8
Q ss_pred HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccc
Q 035738 34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKY 104 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~ 104 (333)
-+.|++.|...+ ++.|..|||+.+|+ +..-+.|+|+.|...|++.+++ +++.|++++....
T Consensus 13 al~iL~~l~~~~--~~ls~~eia~~lgl----~kstv~RlL~tL~~~g~v~~~~----~~~~Y~Lg~~~~~ 73 (263)
T PRK09834 13 GLMVLRALNRLD--GGATVGLLAELTGL----HRTTVRRLLETLQEEGYVRRSA----SDDSFRLTLKVRQ 73 (263)
T ss_pred HHHHHHHHHhcC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEec----CCCcEEEcHHHHH
Confidence 355677777653 46999999999999 9999999999999999999873 3678999865543
No 212
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional
Probab=96.02 E-value=0.0072 Score=53.55 Aligned_cols=57 Identities=14% Similarity=0.275 Sum_probs=47.4
Q ss_pred hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccc
Q 035738 35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVS 102 (333)
Q Consensus 35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~ 102 (333)
+.|++.|... ++.|+.|||+++|+ +..-+.|+|+.|+..|++.++. +++.|++.+..
T Consensus 17 l~IL~~l~~~---~~l~l~eia~~lgl----~kstv~Rll~tL~~~G~l~~~~----~~~~Y~lG~~~ 73 (257)
T PRK15090 17 FGILQALGEE---REIGITELSQRVMM----SKSTVYRFLQTMKTLGYVAQEG----ESEKYSLTLKL 73 (257)
T ss_pred HHHHHHhhcC---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC----CCCcEEecHHH
Confidence 4566666654 48999999999999 9999999999999999999862 36789988654
No 213
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=96.01 E-value=0.01 Score=45.69 Aligned_cols=67 Identities=19% Similarity=0.256 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccc
Q 035738 25 LPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNS 100 (333)
Q Consensus 25 ~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~ 100 (333)
...+|.--.++.|+..|... ++.++.||++.+++ .+..+.+.|+.|...|+++...+ | ....|++++
T Consensus 9 ~fkaLadptRl~IL~~L~~~---~~~~v~ela~~l~l----sqstvS~HL~~L~~AGLV~~~r~-G-r~~~Y~l~~ 75 (117)
T PRK10141 9 LFKILSDETRLGIVLLLRES---GELCVCDLCTALDQ----SQPKISRHLALLRESGLLLDRKQ-G-KWVHYRLSP 75 (117)
T ss_pred HHHHhCCHHHHHHHHHHHHc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEEE-c-CEEEEEECc
Confidence 34567777899999999864 48999999999999 99999999999999999998732 2 123466654
No 214
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=95.94 E-value=0.017 Score=48.37 Aligned_cols=76 Identities=16% Similarity=0.232 Sum_probs=49.7
Q ss_pred eEEEEcCCccHHHHHHHHHCCCCeEEEeec-hh---HhhhCCC---CCCeEEEccCChh----------------HHHHH
Q 035738 193 QLVDVGGGIGVTLQAITTKYPYIKGINFDL-PH---VIEHVPP---HPCMWILHDWNDE----------------HCLKL 249 (333)
Q Consensus 193 ~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~---~~~~a~~---~~gv~vLh~~~~~----------------~~~~l 249 (333)
+++|||+|.|.-+..++-.+|+.+++.+|. .. .++.+.. ..++.++|.--++ ....+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~~l~~l 130 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVAPLDKL 130 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSSSHHHH
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhcCHHHH
Confidence 899999999999999999999999999996 32 2332221 1344333321111 12367
Q ss_pred HHHHHHhCCCCcEEEEEee
Q 035738 250 LKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 250 L~~~~~~L~pgG~l~i~e~ 268 (333)
+.-+...++|||+++..--
T Consensus 131 ~~~~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 131 LELARPLLKPGGRLLAYKG 149 (184)
T ss_dssp HHHHGGGEEEEEEEEEEES
T ss_pred HHHHHHhcCCCCEEEEEcC
Confidence 7777777788887776643
No 215
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=95.93 E-value=0.013 Score=39.47 Aligned_cols=46 Identities=26% Similarity=0.210 Sum_probs=37.3
Q ss_pred ChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738 36 GIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 36 glfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
.|.+.|.... +|.|..|||+++|+ +...++++|..|...|.+.+.+
T Consensus 4 ~Il~~i~~~~--~p~~T~eiA~~~gl----s~~~aR~yL~~Le~eG~V~~~~ 49 (62)
T PF04703_consen 4 KILEYIKEQN--GPLKTREIADALGL----SIYQARYYLEKLEKEGKVERSP 49 (62)
T ss_dssp CHHHHHHHHT--S-EEHHHHHHHHTS-----HHHHHHHHHHHHHCTSEEEES
T ss_pred HHHHHHHHcC--CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEec
Confidence 4566666621 59999999999999 9999999999999999999863
No 216
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.89 E-value=0.24 Score=42.77 Aligned_cols=134 Identities=13% Similarity=0.108 Sum_probs=81.7
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec--hhHhhhCCCCCCe---------------------E
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL--PHVIEHVPPHPCM---------------------W 236 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~~gv---------------------~ 236 (333)
..++.++-......+||||..||.++..++++-. .+++++|. .......|+.+.| .
T Consensus 69 ~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gA-k~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~ 147 (245)
T COG1189 69 KALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGA-KHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDL 147 (245)
T ss_pred HHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCC-cEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCe
Confidence 4455555234788999999999999999998743 35677775 2333344443322 4
Q ss_pred EEccCChhHHHHHHHHHHHhCCCCcEEEEE-eeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCC
Q 035738 237 ILHDWNDEHCLKLLKNCYKSIPEDGKVIAV-ELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFS 315 (333)
Q Consensus 237 vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~-e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~ 315 (333)
+..+.+=.....+|..+...++|++-++.. -+-..-.+.. ...-....| +.....-..++.+++.+.||+
T Consensus 148 ~v~DvSFISL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~--v~kkGvv~d-------~~~~~~v~~~i~~~~~~~g~~ 218 (245)
T COG1189 148 IVIDVSFISLKLILPALLLLLKDGGDLVLLVKPQFEAGREQ--VGKKGVVRD-------PKLHAEVLSKIENFAKELGFQ 218 (245)
T ss_pred EEEEeehhhHHHHHHHHHHhcCCCceEEEEecchhhhhhhh--cCcCceecC-------cchHHHHHHHHHHHHhhcCcE
Confidence 556666555668999999999999765543 3322221110 000000000 112223467889999999999
Q ss_pred eeEEeecC
Q 035738 316 GISCERAI 323 (333)
Q Consensus 316 ~~~~~~~~ 323 (333)
+..+...+
T Consensus 219 ~~gl~~Sp 226 (245)
T COG1189 219 VKGLIKSP 226 (245)
T ss_pred EeeeEccC
Confidence 99887654
No 217
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=95.85 E-value=0.046 Score=49.83 Aligned_cols=42 Identities=29% Similarity=0.516 Sum_probs=36.3
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hhHhhhCCC
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPY-IKGINFDL-PHVIEHVPP 231 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~ 231 (333)
++..++|-+|||-|..++++++ ||+ -+++.+|+ |.|++.++.
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~ 331 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASH 331 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhh
Confidence 4678999999999999999886 784 56899999 999999884
No 218
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=95.82 E-value=0.017 Score=55.31 Aligned_cols=106 Identities=17% Similarity=0.202 Sum_probs=62.0
Q ss_pred hhhhhcCCchhHHHHHHHHhhhhhhhHHHHHhhccCC---CCCCeEEEEcCCccHHHHHHHHHC----CCCeEEEeec-h
Q 035738 152 TFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKGF---DNIKQLVDVGGGIGVTLQAITTKY----PYIKGINFDL-P 223 (333)
Q Consensus 152 ~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~---~~~~~vlDVGgG~G~~~~~l~~~~----p~~~~~~~D~-~ 223 (333)
.|+.+++++.....|.+++.. .+.+..... .+...|+|||||+|-++...+++. ...+++.++- |
T Consensus 152 tYe~fE~D~vKY~~Ye~AI~~-------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~ 224 (448)
T PF05185_consen 152 TYEVFEKDPVKYDQYERAIEE-------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNP 224 (448)
T ss_dssp HHHHHCC-HHHHHHHHHHHHH-------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESST
T ss_pred cHhhHhcCHHHHHHHHHHHHH-------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCH
Confidence 477788898888888877632 222322211 135789999999999987766553 4678999987 5
Q ss_pred hHhhhCC----C--CCC-e---------------------EEEccCC-hhHHHHHHHHHHHhCCCCcEEE
Q 035738 224 HVIEHVP----P--HPC-M---------------------WILHDWN-DEHCLKLLKNCYKSIPEDGKVI 264 (333)
Q Consensus 224 ~~~~~a~----~--~~g-v---------------------~vLh~~~-~~~~~~lL~~~~~~L~pgG~l~ 264 (333)
.+....+ . ..+ | ..|-.+. .+-..++|....+.|+|||.++
T Consensus 225 ~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 225 NAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp HHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred hHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 4433221 1 111 1 2222222 2344567888888999998654
No 219
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=95.78 E-value=0.013 Score=37.06 Aligned_cols=40 Identities=18% Similarity=0.197 Sum_probs=35.5
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccc
Q 035738 49 KLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSL 98 (333)
Q Consensus 49 ~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~ 98 (333)
+.|..+||+.+|+ +...+.+.|+.|...|++... ++.|.+
T Consensus 8 ~~s~~~la~~l~~----s~~tv~~~l~~L~~~g~l~~~------~~~~~i 47 (48)
T smart00419 8 PLTRQEIAELLGL----TRETVSRTLKRLEKEGLISRE------GGRIVI 47 (48)
T ss_pred ccCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe------CCEEEE
Confidence 7899999999999 999999999999999999975 455654
No 220
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.77 E-value=0.0099 Score=53.72 Aligned_cols=83 Identities=20% Similarity=0.358 Sum_probs=58.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCe-EEEeec-hhH---hhhCCCC----------CCe-------------------
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIK-GINFDL-PHV---IEHVPPH----------PCM------------------- 235 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~---~~~a~~~----------~gv------------------- 235 (333)
.+.+|||||.|.|.-+.++-.-+|+++ +++++. |.. +....++ .+|
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~ 192 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVL 192 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhh
Confidence 356799999999999999888999987 455665 332 2221111 111
Q ss_pred -EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 035738 236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPE 272 (333)
Q Consensus 236 -~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~ 272 (333)
.+||+=++.+....++++-..+.|||.++|+|...+-
T Consensus 193 ~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 193 DELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred hhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 5555555555556899999999999999999985543
No 221
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.77 E-value=0.11 Score=43.93 Aligned_cols=87 Identities=21% Similarity=0.200 Sum_probs=52.5
Q ss_pred hHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeechhHhhhCCCCCCeEEE-ccCChhHHHHHHHHHH
Q 035738 177 VMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDLPHVIEHVPPHPCMWIL-HDWNDEHCLKLLKNCY 254 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~gv~vL-h~~~~~~~~~lL~~~~ 254 (333)
-..++.+.+.-+++..+|+|+|+..|.++..+.+... ..+++++|+.++-. .+||..| -++.+++ .+.++.
T Consensus 32 KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~----~~~V~~iq~d~~~~~---~~~~l~ 104 (205)
T COG0293 32 KLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP----IPGVIFLQGDITDED---TLEKLL 104 (205)
T ss_pred HHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----CCCceEEeeeccCcc---HHHHHH
Confidence 3445666665477889999999999999998888654 56689999833322 1233222 2334332 344444
Q ss_pred HhCCCCc-EEEEEeeec
Q 035738 255 KSIPEDG-KVIAVELML 270 (333)
Q Consensus 255 ~~L~pgG-~l~i~e~~~ 270 (333)
..+.... -+++.|...
T Consensus 105 ~~l~~~~~DvV~sD~ap 121 (205)
T COG0293 105 EALGGAPVDVVLSDMAP 121 (205)
T ss_pred HHcCCCCcceEEecCCC
Confidence 4444433 455555543
No 222
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=95.75 E-value=0.081 Score=44.81 Aligned_cols=85 Identities=15% Similarity=0.145 Sum_probs=64.5
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC-----CCe--------------------EEEcc-C
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH-----PCM--------------------WILHD-W 241 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-----~gv--------------------~vLh~-~ 241 (333)
..++.|||.||-|-|-....+.++.|..+.|+---|.|.++.+.. .+| -|+.+ +
T Consensus 99 ~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy 178 (271)
T KOG1709|consen 99 STKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTY 178 (271)
T ss_pred hhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeech
Confidence 357889999999999999999999998887766558898887653 222 33333 2
Q ss_pred C--hhHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 035738 242 N--DEHCLKLLKNCYKSIPEDGKVIAVELMLPE 272 (333)
Q Consensus 242 ~--~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~ 272 (333)
+ -++.....+.+.+.|||+|.+-.+.....+
T Consensus 179 ~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~~~ 211 (271)
T KOG1709|consen 179 SELYEDLRHFHQHVVRLLKPEGVFSYFNGLGAD 211 (271)
T ss_pred hhHHHHHHHHHHHHhhhcCCCceEEEecCcccc
Confidence 1 345668889999999999999888876544
No 223
>PHA00738 putative HTH transcription regulator
Probab=95.70 E-value=0.015 Score=43.51 Aligned_cols=62 Identities=23% Similarity=0.181 Sum_probs=49.6
Q ss_pred HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccc
Q 035738 32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVS 102 (333)
Q Consensus 32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~ 102 (333)
-.+..|++.|.++ ++.++.+|++.+++ ....+.+.|+.|...|+|.... .| ....|++++..
T Consensus 12 ptRr~IL~lL~~~---e~~~V~eLae~l~l----SQptVS~HLKvLreAGLV~srK-~G-r~vyY~Ln~~~ 73 (108)
T PHA00738 12 ILRRKILELIAEN---YILSASLISHTLLL----SYTTVLRHLKILNEQGYIELYK-EG-RTLYAKIRENS 73 (108)
T ss_pred HHHHHHHHHHHHc---CCccHHHHHHhhCC----CHHHHHHHHHHHHHCCceEEEE-EC-CEEEEEECCCc
Confidence 3577889999884 37999999999999 9999999999999999999873 22 24456655444
No 224
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=95.69 E-value=0.028 Score=38.30 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccc
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNS 100 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~ 100 (333)
++.|..+||+.+|+ ++..+.+.|+.|...|++... ..+.|.+++
T Consensus 24 ~~~s~~ela~~~g~----s~~tv~r~l~~L~~~g~i~~~-----~~~~~~l~~ 67 (67)
T cd00092 24 LPLTRQEIADYLGL----TRETVSRTLKELEEEGLISRR-----GRGKYRVNP 67 (67)
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec-----CCCeEEeCC
Confidence 48999999999999 999999999999999999986 136677653
No 225
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=95.63 E-value=0.088 Score=46.99 Aligned_cols=53 Identities=23% Similarity=0.220 Sum_probs=44.7
Q ss_pred HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCe-EEEeec-hhHhhhCCC
Q 035738 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIK-GINFDL-PHVIEHVPP 231 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~ 231 (333)
..+.++.+. ..+....+|.-=|.|.++..+++++|... .+++|. |.+++.|++
T Consensus 12 l~E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~ 66 (314)
T COG0275 12 LNEVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKE 66 (314)
T ss_pred HHHHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHH
Confidence 456666666 66678999999999999999999999765 999999 889988765
No 226
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=95.63 E-value=0.007 Score=42.97 Aligned_cols=49 Identities=14% Similarity=0.196 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccccc
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYV 106 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~ 106 (333)
|+.+..+|+..+++ +...+.+.|+.|...|+++.. ++.|.+|+.+..++
T Consensus 18 ~~~~~t~i~~~~~L----~~~~~~~yL~~L~~~gLI~~~------~~~Y~lTekG~~~l 66 (77)
T PF14947_consen 18 GGAKKTEIMYKANL----NYSTLKKYLKELEEKGLIKKK------DGKYRLTEKGKEFL 66 (77)
T ss_dssp T-B-HHHHHTTST------HHHHHHHHHHHHHTTSEEEE------TTEEEE-HHHHHHH
T ss_pred CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCcCeeCC------CCEEEECccHHHHH
Confidence 58999999999999 999999999999999999764 79999999887655
No 227
>COG1959 Predicted transcriptional regulator [Transcription]
Probab=95.53 E-value=0.022 Score=46.08 Aligned_cols=55 Identities=22% Similarity=0.283 Sum_probs=44.1
Q ss_pred hhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccc
Q 035738 41 IDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVS 102 (333)
Q Consensus 41 L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~ 102 (333)
|+..+.+++.|+++||+..|+ ++.+++++|..|...|+|+-.. | .+|.|+|..-.
T Consensus 17 LA~~~~~~~~s~~~IA~~~~i----s~~~L~kil~~L~kaGlV~S~r--G-~~GGy~Lar~~ 71 (150)
T COG1959 17 LALLPGGGPVSSAEIAERQGI----SPSYLEKILSKLRKAGLVKSVR--G-KGGGYRLARPP 71 (150)
T ss_pred HHhCCCCCcccHHHHHHHhCc----CHHHHHHHHHHHHHcCCEEeec--C-CCCCccCCCCh
Confidence 444333348999999999999 9999999999999999999873 3 36788887543
No 228
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=95.50 E-value=0.093 Score=46.57 Aligned_cols=124 Identities=15% Similarity=0.166 Sum_probs=77.6
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeechhHhhhCCCC---------C--------------------Ce---
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDLPHVIEHVPPH---------P--------------------CM--- 235 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~---------~--------------------gv--- 235 (333)
++...||.+|||-=.....+. +| +++++-+|.|++++.-++. . |.
T Consensus 80 ~g~~qvV~LGaGlDTr~~Rl~--~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~ 157 (260)
T TIGR00027 80 AGIRQVVILGAGLDTRAYRLP--WPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPT 157 (260)
T ss_pred cCCcEEEEeCCccccHHHhcC--CCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCC
Confidence 356789999999888777763 33 5778888889887633211 0 00
Q ss_pred --------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCC----CcCCHH
Q 035738 236 --------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGG----KERTRH 303 (333)
Q Consensus 236 --------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g----~~rt~~ 303 (333)
.++.+++++++.++|+.+.+...||+.|+ +|.+.+-.... .... ............+ ...+.+
T Consensus 158 ~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~-~d~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 232 (260)
T TIGR00027 158 APTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLA-FDYVRPLDGEW--RAGM--RAPVYHAARGVDGSGLVFGIDRA 232 (260)
T ss_pred CCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEE-EEeccccchhH--HHHH--HHHHHHhhhcccccccccCCChh
Confidence 77889999999999999999888877655 56554411100 0000 0000000000001 123578
Q ss_pred HHHHHHHhCCCCeeEE
Q 035738 304 EFMTLATGAGFSGISC 319 (333)
Q Consensus 304 e~~~ll~~aGf~~~~~ 319 (333)
++.++|++.||+....
T Consensus 233 ~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 233 DVAEWLAERGWRASEH 248 (260)
T ss_pred hHHHHHHHCCCeeecC
Confidence 9999999999997765
No 229
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=95.47 E-value=0.026 Score=46.30 Aligned_cols=46 Identities=15% Similarity=0.198 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccc
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNS 100 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~ 100 (333)
++.|+++||+++++ ++..++++|+.|...|+|.... | .++.|.+..
T Consensus 24 ~~vs~~eIA~~~~i----p~~~l~kIl~~L~~aGLv~s~r--G-~~GGy~Lar 69 (164)
T PRK10857 24 GPVPLADISERQGI----SLSYLEQLFSRLRKNGLVSSVR--G-PGGGYLLGK 69 (164)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeCC--C-CCCCeeccC
Confidence 48999999999999 9999999999999999999742 3 356788764
No 230
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=95.37 E-value=0.051 Score=46.95 Aligned_cols=80 Identities=14% Similarity=0.265 Sum_probs=61.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCC----CeEEEeec-hhHhhh-----CCCCCCe------------------------
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPY----IKGINFDL-PHVIEH-----VPPHPCM------------------------ 235 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~----~~~~~~D~-~~~~~~-----a~~~~gv------------------------ 235 (333)
+.-+++|+|.|+..=+..++.++.. ++++-+|+ ..++.. .+++|++
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~ 157 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLF 157 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEE
Confidence 4678999999999999988888766 78888998 455442 2234432
Q ss_pred ----EEEccCChhHHHHHHHHHHHhCCCCcEEEE-Eeee
Q 035738 236 ----WILHDWNDEHCLKLLKNCYKSIPEDGKVIA-VELM 269 (333)
Q Consensus 236 ----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i-~e~~ 269 (333)
..|-++++++|...|.+++.+|+||-.+++ +|..
T Consensus 158 ~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~ 196 (321)
T COG4301 158 VFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLR 196 (321)
T ss_pred EEecccccCCChHHHHHHHHHHHhcCCCcceEEEecccc
Confidence 566788999999999999999999976665 4443
No 231
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=95.36 E-value=0.019 Score=39.39 Aligned_cols=50 Identities=24% Similarity=0.375 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccC-CCcccccccccc
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDA-SGARRLYSLNSV 101 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~-~~~~~~y~~t~~ 101 (333)
++.+..+|++.+++ +...+.+.++.|...|+|++.... ......|++|+.
T Consensus 17 ~~~t~~~l~~~~~~----~~~~vs~~i~~L~~~glv~~~~~~~d~R~~~~~LT~~ 67 (68)
T PF13463_consen 17 GPMTQSDLAERLGI----SKSTVSRIIKKLEEKGLVEKERDPHDKRSKRYRLTPA 67 (68)
T ss_dssp S-BEHHHHHHHTT------HHHHHHHHHHHHHTTSEEEEEESSCTTSEEEEE-HH
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecCCCCcCCeeEEEeCCC
Confidence 59999999999999 999999999999999999876321 111234777764
No 232
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=95.33 E-value=0.019 Score=39.78 Aligned_cols=43 Identities=14% Similarity=0.291 Sum_probs=36.8
Q ss_pred hhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 37 IFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 37 lfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
|-+.|.+. +.+|..|||..+++ ++..++.+|+.|...|.+.+.
T Consensus 5 i~~~l~~~---~~~S~~eLa~~~~~----s~~~ve~mL~~l~~kG~I~~~ 47 (69)
T PF09012_consen 5 IRDYLRER---GRVSLAELAREFGI----SPEAVEAMLEQLIRKGYIRKV 47 (69)
T ss_dssp HHHHHHHS----SEEHHHHHHHTT------HHHHHHHHHHHHCCTSCEEE
T ss_pred HHHHHHHc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEe
Confidence 55677776 59999999999999 999999999999999999987
No 233
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=95.28 E-value=0.012 Score=42.05 Aligned_cols=64 Identities=20% Similarity=0.274 Sum_probs=47.1
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccC-CC-cccccccccccc
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDA-SG-ARRLYSLNSVSK 103 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~-~~-~~~~y~~t~~~~ 103 (333)
++++|...|... +.++..+|.+.+|+ +...+.+.|+.|...|++.....- +. ....|++|+.+.
T Consensus 1 vRl~Il~~L~~~---~~~~f~~L~~~l~l----t~g~Ls~hL~~Le~~GyV~~~k~~~~~~p~t~~~lT~~Gr 66 (80)
T PF13601_consen 1 VRLAILALLYAN---EEATFSELKEELGL----TDGNLSKHLKKLEEAGYVEVEKEFEGRRPRTWYSLTDKGR 66 (80)
T ss_dssp HHHHHHHHHHHH---SEEEHHHHHHHTT------HHHHHHHHHHHHHTTSEEEEEE-SSS--EEEEEE-HHHH
T ss_pred CHHHHHHHHhhc---CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEEEeccCCCCeEEEEECHHHH
Confidence 467888888875 48999999999999 999999999999999999987421 11 122366676664
No 234
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=95.24 E-value=0.024 Score=36.88 Aligned_cols=43 Identities=23% Similarity=0.465 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHH
Q 035738 25 LPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLL 77 (333)
Q Consensus 25 ~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L 77 (333)
.-.+|.+|++.|-||. +. ..|..|||+.+|+ .+..+...||-.
T Consensus 5 Q~e~L~~A~~~GYfd~-PR-----~~tl~elA~~lgi----s~st~~~~LRra 47 (53)
T PF04967_consen 5 QREILKAAYELGYFDV-PR-----RITLEELAEELGI----SKSTVSEHLRRA 47 (53)
T ss_pred HHHHHHHHHHcCCCCC-CC-----cCCHHHHHHHhCC----CHHHHHHHHHHH
Confidence 3468999999999998 43 6899999999999 787777777643
No 235
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=95.20 E-value=0.032 Score=43.19 Aligned_cols=47 Identities=17% Similarity=0.263 Sum_probs=40.0
Q ss_pred HhChhhHhh-hcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738 34 ELGIFEIID-KAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 34 ~lglfd~L~-~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
+..+|.+|- .+ ||.|+++||+.++. +..-+++-|+-|...|++.+..
T Consensus 29 Dv~v~~~LL~~~---~~~tvdelae~lnr----~rStv~rsl~~L~~~GlV~Rek 76 (126)
T COG3355 29 DVEVYKALLEEN---GPLTVDELAEILNR----SRSTVYRSLQNLLEAGLVEREK 76 (126)
T ss_pred HHHHHHHHHhhc---CCcCHHHHHHHHCc----cHHHHHHHHHHHHHcCCeeeee
Confidence 345555555 44 69999999999999 9999999999999999999984
No 236
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=95.17 E-value=0.019 Score=52.09 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=34.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPP 231 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~ 231 (333)
+..+|||||||||-++.-.+++. ..+++++|...+++.|++
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~ 100 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARK 100 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHH
Confidence 56899999999999999888877 568999999888777764
No 237
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=95.09 E-value=0.035 Score=43.99 Aligned_cols=46 Identities=15% Similarity=0.220 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccc
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNS 100 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~ 100 (333)
++.|+++||+.+++ ++..++++|+.|...|++.... | .++.|.++.
T Consensus 24 ~~~s~~~ia~~~~i----p~~~l~kil~~L~~~glv~s~~--G-~~Ggy~l~~ 69 (135)
T TIGR02010 24 GPVTLADISERQGI----SLSYLEQLFAKLRKAGLVKSVR--G-PGGGYQLGR 69 (135)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEe--C-CCCCEeccC
Confidence 48999999999999 9999999999999999998642 2 245677764
No 238
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=95.08 E-value=0.028 Score=47.39 Aligned_cols=42 Identities=12% Similarity=0.031 Sum_probs=35.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH 232 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~ 232 (333)
...++||++||+|.++.+++.+... +++.+|. +.+++.++++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~~~N 91 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTLKEN 91 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHH
Confidence 3578999999999999999998764 7899998 7777776653
No 239
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.07 E-value=0.025 Score=44.70 Aligned_cols=41 Identities=29% Similarity=0.465 Sum_probs=33.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCC-eEEEeec-hhHhhhCCCC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYI-KGINFDL-PHVIEHVPPH 232 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~ 232 (333)
.+.++.|+|||.|-+. ++-.+|.. .++|+|+ |..++.++++
T Consensus 48 Egkkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf~rN 90 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDPEALEIFTRN 90 (185)
T ss_pred cCcchhhhcCchhhhH--HHhhcCCCceEEeeecCHHHHHHHhhc
Confidence 5678999999999998 44445544 5799999 9999999876
No 240
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=94.98 E-value=0.47 Score=39.44 Aligned_cols=80 Identities=18% Similarity=0.284 Sum_probs=54.7
Q ss_pred HHhhccCCCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeechhHhhhCCCCCCeEEE--ccCChhHHHHHHHHHHHhC
Q 035738 181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDLPHVIEHVPPHPCMWIL--HDWNDEHCLKLLKNCYKSI 257 (333)
Q Consensus 181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~gv~vL--h~~~~~~~~~lL~~~~~~L 257 (333)
+-+.+.-+++..+|||+||..|.++.-..++. |+-.+.++|+-++.. .+|+.++ .++.|+ ...++++++|
T Consensus 60 indKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p----~~Ga~~i~~~dvtdp---~~~~ki~e~l 132 (232)
T KOG4589|consen 60 INDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP----PEGATIIQGNDVTDP---ETYRKIFEAL 132 (232)
T ss_pred ehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC----CCCcccccccccCCH---HHHHHHHHhC
Confidence 33444446778999999999999999877765 999999999843321 2344333 356666 5788999999
Q ss_pred CCCc--EEEEEee
Q 035738 258 PEDG--KVIAVEL 268 (333)
Q Consensus 258 ~pgG--~l~i~e~ 268 (333)
|+- -+++.|.
T Consensus 133 -p~r~VdvVlSDM 144 (232)
T KOG4589|consen 133 -PNRPVDVVLSDM 144 (232)
T ss_pred -CCCcccEEEecc
Confidence 542 3444444
No 241
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.96 E-value=1.1 Score=37.77 Aligned_cols=116 Identities=12% Similarity=0.103 Sum_probs=75.2
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhH----hhhCCCCCCe---------------------EEEccC
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHV----IEHVPPHPCM---------------------WILHDW 241 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~----~~~a~~~~gv---------------------~vLh~~ 241 (333)
++++.+||-+|..+|.+...+..-.++-.+.+++. |.+ ++.|++.+++ .+..+.
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DV 153 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQDV 153 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEec
Confidence 67899999999999999999998888767777776 543 4455544332 556676
Q ss_pred Chh-HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEe
Q 035738 242 NDE-HCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCE 320 (333)
Q Consensus 242 ~~~-~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 320 (333)
..+ ++.=+..++..-|++||.+++.=-...-+...+ .++ -..+-.+-|++.||++.++.
T Consensus 154 AQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~d-------------------p~~-vf~~ev~kL~~~~f~i~e~~ 213 (231)
T COG1889 154 AQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTAD-------------------PEE-VFKDEVEKLEEGGFEILEVV 213 (231)
T ss_pred CCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCC-------------------HHH-HHHHHHHHHHhcCceeeEEe
Confidence 644 344456677888999987666544322211110 000 12233455688899999888
Q ss_pred ecC
Q 035738 321 RAI 323 (333)
Q Consensus 321 ~~~ 323 (333)
...
T Consensus 214 ~Le 216 (231)
T COG1889 214 DLE 216 (231)
T ss_pred ccC
Confidence 764
No 242
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.95 E-value=0.15 Score=43.61 Aligned_cols=85 Identities=12% Similarity=0.192 Sum_probs=61.6
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hhHhhhCCCC---CCe---------------------------
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPY-IKGINFDL-PHVIEHVPPH---PCM--------------------------- 235 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~---~gv--------------------------- 235 (333)
.-++++++|||.=||..+..++.+-|. -+++.+|+ +...+.+.+. .|+
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 446899999999999999999998875 67888998 5555555321 111
Q ss_pred -EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 035738 236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPE 272 (333)
Q Consensus 236 -~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~ 272 (333)
+++-+-..........++.+.+++||.|++-....+.
T Consensus 151 DfaFvDadK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 151 DFAFVDADKDNYSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred eEEEEccchHHHHHHHHHHHhhcccccEEEEeccccCC
Confidence 5555544445568999999999999987766554443
No 243
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=94.92 E-value=0.028 Score=37.74 Aligned_cols=49 Identities=18% Similarity=0.310 Sum_probs=39.4
Q ss_pred HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738 34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
+..++..|...++ ...|+.|||+.+++ ++..+.+.++.|...|++++..
T Consensus 7 q~~vL~~l~~~~~-~~~t~~~la~~l~~----~~~~vs~~v~~L~~~Glv~r~~ 55 (62)
T PF12802_consen 7 QFRVLMALARHPG-EELTQSELAERLGI----SKSTVSRIVKRLEKKGLVERER 55 (62)
T ss_dssp HHHHHHHHHHSTT-SGEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCCC-CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC
Confidence 4456667776531 12899999999999 9999999999999999999873
No 244
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=94.89 E-value=0.026 Score=52.48 Aligned_cols=39 Identities=10% Similarity=0.181 Sum_probs=34.2
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738 192 KQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH 232 (333)
Q Consensus 192 ~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~ 232 (333)
.+|||++||+|.++..+++... +++++|. +.+++.++++
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n 238 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYN 238 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHH
Confidence 4699999999999999988874 7999999 8899888765
No 245
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=94.86 E-value=0.062 Score=41.40 Aligned_cols=69 Identities=17% Similarity=0.136 Sum_probs=51.0
Q ss_pred HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccC-CCcccccccccccccccc
Q 035738 32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDA-SGARRLYSLNSVSKYYVP 107 (333)
Q Consensus 32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~-~~~~~~y~~t~~~~~l~~ 107 (333)
..+..++..|... ++.|..+||+.+++ +...+.+.++-|...|+|.+.... +...-.+.+|+.+..+..
T Consensus 28 ~~q~~iL~~l~~~---~~~t~~ela~~~~~----~~~tvs~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~G~~~~~ 97 (118)
T TIGR02337 28 EQQWRILRILAEQ---GSMEFTQLANQACI----LRPSLTGILARLERDGLVTRLKASNDQRRVYISLTPKGQALYA 97 (118)
T ss_pred HHHHHHHHHHHHc---CCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence 3445577777775 48999999999999 888999999999999999986311 111224777777665543
No 246
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=94.84 E-value=0.047 Score=42.97 Aligned_cols=47 Identities=26% Similarity=0.296 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccc
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSV 101 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~ 101 (333)
++.|.++||+.+++ ++..++++|+.|...|++.... | .++.|.++..
T Consensus 24 ~~~s~~eia~~~~i----~~~~v~~il~~L~~~gli~~~~--g-~~ggy~l~~~ 70 (132)
T TIGR00738 24 GPVSVKEIAERQGI----SRSYLEKILRTLRRAGLVESVR--G-PGGGYRLARP 70 (132)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEecc--C-CCCCccCCCC
Confidence 48999999999999 9999999999999999998641 2 2456776543
No 247
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR. All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.
Probab=94.80 E-value=0.042 Score=46.84 Aligned_cols=66 Identities=20% Similarity=0.277 Sum_probs=49.1
Q ss_pred hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeecc---CCCcccccccccccccccc
Q 035738 35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLD---ASGARRLYSLNSVSKYYVP 107 (333)
Q Consensus 35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~---~~~~~~~y~~t~~~~~l~~ 107 (333)
..|+..|... ++.|..+||+.+|+ ++..+++.|+.|...|++.+... .|.....|.+|+.+.....
T Consensus 4 ~~IL~~L~~~---~~~t~~eLA~~lgi----s~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~~~~ 72 (203)
T TIGR02702 4 EDILSYLLKQ---GQATAAALAEALAI----SPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGREQFP 72 (203)
T ss_pred HHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhhhcc
Confidence 4567777765 48999999999999 99999999999999999997621 1111223677776664443
No 248
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=94.73 E-value=0.093 Score=49.24 Aligned_cols=75 Identities=13% Similarity=0.069 Sum_probs=54.9
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe------------------EEEccCChhH
Q 035738 191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM------------------WILHDWNDEH 245 (333)
Q Consensus 191 ~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv------------------~vLh~~~~~~ 245 (333)
..+|||++||+|..+..++...+..++++.|+ |..++.++++ .++ .|.-|-+ -.
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~-Gs 136 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF-GS 136 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC-CC
Confidence 45899999999999999998887668999999 8888777653 111 1111211 11
Q ss_pred HHHHHHHHHHhCCCCcEEEEE
Q 035738 246 CLKLLKNCYKSIPEDGKVIAV 266 (333)
Q Consensus 246 ~~~lL~~~~~~L~pgG~l~i~ 266 (333)
...+|..+.+.+++||.++|.
T Consensus 137 ~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 137 PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred cHHHHHHHHHHhcCCCEEEEE
Confidence 236788877889999999998
No 249
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=94.68 E-value=0.35 Score=44.27 Aligned_cols=78 Identities=10% Similarity=0.095 Sum_probs=51.5
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCCCCe------------------EEEccCChhHHHHH
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM------------------WILHDWNDEHCLKL 249 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~gv------------------~vLh~~~~~~~~~l 249 (333)
+..+.++||+||++|.++..++++. .+++.+|...+.......+.| +++.|..+.. .++
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG--~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~P-~rv 285 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRG--MFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEKP-ARV 285 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcC--CEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccCH-HHH
Confidence 3467899999999999999999984 589999985555544433332 4555554332 356
Q ss_pred HHHHHHhCCCC-cEEEEEee
Q 035738 250 LKNCYKSIPED-GKVIAVEL 268 (333)
Q Consensus 250 L~~~~~~L~pg-G~l~i~e~ 268 (333)
++-+.+.|..| -+-.|+..
T Consensus 286 a~lm~~Wl~~g~cr~aIfnL 305 (357)
T PRK11760 286 AELMAQWLVNGWCREAIFNL 305 (357)
T ss_pred HHHHHHHHhcCcccEEEEEE
Confidence 66666777666 33333333
No 250
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.63 E-value=0.053 Score=40.65 Aligned_cols=43 Identities=19% Similarity=0.326 Sum_probs=29.5
Q ss_pred hHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec
Q 035738 177 VMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL 222 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~ 222 (333)
...-|.+.+. .......+|||||+|.+.--|...- -++.|+|.
T Consensus 46 Li~LW~~~~~-~~~~~~FVDlGCGNGLLV~IL~~EG--y~G~GiD~ 88 (112)
T PF07757_consen 46 LIELWRDMYG-EQKFQGFVDLGCGNGLLVYILNSEG--YPGWGIDA 88 (112)
T ss_pred HHHHHhcccC-CCCCCceEEccCCchHHHHHHHhCC--CCcccccc
Confidence 3344444443 3467789999999999988887653 23677775
No 251
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=94.62 E-value=0.03 Score=47.02 Aligned_cols=124 Identities=19% Similarity=0.272 Sum_probs=69.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-C-----------Ce--------EEEccCChhHHHH
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-P-----------CM--------WILHDWNDEHCLK 248 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~-----------gv--------~vLh~~~~~~~~~ 248 (333)
.+.++||+|.|.|..+..+...+..+-. -++ ..|+.+.+.. - ++ ++|....++- +
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~feevyA--TElS~tMr~rL~kk~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p~--k 187 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEEVYA--TELSWTMRDRLKKKNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDPF--K 187 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHHHHH--HHhhHHHHHHHhhcCCceeeehhhhhcCceeehHHHHHHHHhhcChH--H
Confidence 4689999999999998887766655322 244 4455555432 1 11 4554334443 8
Q ss_pred HHHHHHHhCCC-CcEEEEEeeecCCCCCC--ccccccccchhhHHHhhCCCCCcCC--HHHHHHHHHhCCCCeeEEeec
Q 035738 249 LLKNCYKSIPE-DGKVIAVELMLPEVPNT--SIESKSNSDSDVLMMIQSPGGKERT--RHEFMTLATGAGFSGISCERA 322 (333)
Q Consensus 249 lL~~~~~~L~p-gG~l~i~e~~~~~~~~~--~~~~~~~~~~d~~m~~~~~~g~~rt--~~e~~~ll~~aGf~~~~~~~~ 322 (333)
+|+.+..+|.| .|++++. .+.|-.+-. +..... ..=|- .+- -+|+.+. ...+.++|+++||++......
T Consensus 188 LL~Di~~vl~psngrviva-LVLP~~hYVE~N~~g~~-~rPdn-~Le--~~Gr~~ee~v~~~~e~lr~~g~~veawTrl 261 (288)
T KOG3987|consen 188 LLEDIHLVLAPSNGRVIVA-LVLPYMHYVETNTSGLP-LRPDN-LLE--NNGRSFEEEVARFMELLRNCGYRVEAWTRL 261 (288)
T ss_pred HHHHHHHHhccCCCcEEEE-EEecccceeecCCCCCc-CCchH-HHH--hcCccHHHHHHHHHHHHHhcCchhhhhhcC
Confidence 99999999999 5876654 333311100 000000 00011 111 2454322 234678999999987655544
No 252
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=94.56 E-value=0.091 Score=46.11 Aligned_cols=51 Identities=16% Similarity=0.333 Sum_probs=40.9
Q ss_pred HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP 231 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 231 (333)
...+.+..+ ......||+||.|||.++..++++.. +++.+++ |.+++...+
T Consensus 47 ~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~k--kVvA~E~Dprmvael~k 98 (315)
T KOG0820|consen 47 IDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAGK--KVVAVEIDPRMVAELEK 98 (315)
T ss_pred HHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhcC--eEEEEecCcHHHHHHHH
Confidence 455666666 78889999999999999999999875 5788888 777776543
No 253
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=94.55 E-value=0.043 Score=40.53 Aligned_cols=47 Identities=21% Similarity=0.353 Sum_probs=41.1
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
.++.++..|... ++.|..+|++.+++ ++..+.+.++-|...|++.+.
T Consensus 11 ~~~~il~~l~~~---~~~~~~~la~~~~~----s~~~i~~~l~~L~~~g~v~~~ 57 (101)
T smart00347 11 TQFLVLRILYEE---GPLSVSELAKRLGV----SPSTVTRVLDRLEKKGLIRRL 57 (101)
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHCC----CchhHHHHHHHHHHCCCeEec
Confidence 356677888765 47999999999999 899999999999999999976
No 254
>PRK03902 manganese transport transcriptional regulator; Provisional
Probab=94.44 E-value=0.056 Score=43.24 Aligned_cols=49 Identities=20% Similarity=0.192 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccccccc
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYY 105 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l 105 (333)
|+.++.+||+.+++ ++..+.+.++.|...|++.+. ....|.+|+.+..+
T Consensus 21 ~~~~~~ela~~l~v----s~~svs~~l~~L~~~Gli~~~-----~~~~i~LT~~G~~~ 69 (142)
T PRK03902 21 GYARVSDIAEALSV----HPSSVTKMVQKLDKDEYLIYE-----KYRGLVLTPKGKKI 69 (142)
T ss_pred CCcCHHHHHHHhCC----ChhHHHHHHHHHHHCCCEEEe-----cCceEEECHHHHHH
Confidence 58899999999999 999999999999999999975 24678888887644
No 255
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=94.44 E-value=0.11 Score=49.95 Aligned_cols=42 Identities=7% Similarity=0.055 Sum_probs=32.9
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hhHhhhC
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPY-IKGINFDL-PHVIEHV 229 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a 229 (333)
...+.+|||+.+|.|.=+..++....+ ..++..|+ +.-++..
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L 154 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVL 154 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHH
Confidence 567789999999999999999887653 57788888 5555444
No 256
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=94.37 E-value=0.073 Score=35.28 Aligned_cols=44 Identities=20% Similarity=0.395 Sum_probs=39.9
Q ss_pred ChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 36 GIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 36 glfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
.|.+.|.+. +..|++|||+.+|+ .+.-++|=|..|...|++.+.
T Consensus 4 ~Il~~l~~~---~~~s~~ela~~~~V----S~~TiRRDl~~L~~~g~i~r~ 47 (57)
T PF08220_consen 4 QILELLKEK---GKVSVKELAEEFGV----SEMTIRRDLNKLEKQGLIKRT 47 (57)
T ss_pred HHHHHHHHc---CCEEHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 366778876 59999999999999 999999999999999999987
No 257
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=94.31 E-value=0.038 Score=51.53 Aligned_cols=39 Identities=10% Similarity=0.178 Sum_probs=33.9
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738 192 KQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH 232 (333)
Q Consensus 192 ~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~ 232 (333)
.++||++||+|.++..+++... +++++|. +.+++.++++
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N 247 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYN 247 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHH
Confidence 5799999999999998888764 7999999 8888888764
No 258
>PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length. The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator.
Probab=94.31 E-value=0.067 Score=38.94 Aligned_cols=69 Identities=17% Similarity=0.133 Sum_probs=52.8
Q ss_pred HHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHH----------HHHhcccce-eeeccCCCcccccccc
Q 035738 31 AVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRIL----------RLLASYSVV-ECSLDASGARRLYSLN 99 (333)
Q Consensus 31 ~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL----------~~L~~~g~l-~~~~~~~~~~~~y~~t 99 (333)
.=++..|+..|.+..| .+.++.|||..+++ ++..+..-| +.|+.+|++ .+....| ...|++|
T Consensus 8 S~~R~~vl~~L~~~yp-~~~~~~eIar~v~~----~~snV~GaL~G~g~rY~~e~SLv~lGLV~~~~~~~g--~k~Y~lT 80 (90)
T PF07381_consen 8 SKVRKKVLEYLCSIYP-EPAYPSEIARSVGS----DYSNVLGALRGDGKRYNKEDSLVGLGLVEEEEEKGG--FKYYRLT 80 (90)
T ss_pred HHHHHHHHHHHHHcCC-CcCCHHHHHHHHCC----CHHHHHHHHhcCCCCcCcchhHHHcCCeeEeeecCC--eeEEEeC
Confidence 5567788999998744 59999999999999 998888888 468999999 4442223 4478988
Q ss_pred ccccccc
Q 035738 100 SVSKYYV 106 (333)
Q Consensus 100 ~~~~~l~ 106 (333)
+.+..+.
T Consensus 81 ~~G~~~~ 87 (90)
T PF07381_consen 81 EKGKRIA 87 (90)
T ss_pred hhhhhHH
Confidence 8776443
No 259
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.22 E-value=0.12 Score=46.75 Aligned_cols=144 Identities=16% Similarity=0.110 Sum_probs=84.5
Q ss_pred HhhhhhhhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeechhHhhhCCCC--------C-------
Q 035738 170 MYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDLPHVIEHVPPH--------P------- 233 (333)
Q Consensus 170 m~~~~~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~--------~------- 233 (333)
+...+++.-+.+.+.++ .+..+||-+|||-=.-+-++ .+| .+++.-+|.|++++.-++. |
T Consensus 74 ~a~Rtr~fD~~~~~~~~--~g~~qvViLgaGLDTRayRl--~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va 149 (297)
T COG3315 74 LAARTRYFDDFVRAALD--AGIRQVVILGAGLDTRAYRL--DWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVA 149 (297)
T ss_pred HHHHHHHHHHHHHHHHH--hcccEEEEeccccccceeec--CCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEe
Confidence 44444444333444332 33789999999865544433 344 4777888889998754331 1
Q ss_pred ---------------Ce-----------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCcc-ccccccch
Q 035738 234 ---------------CM-----------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSI-ESKSNSDS 286 (333)
Q Consensus 234 ---------------gv-----------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~-~~~~~~~~ 286 (333)
|. -+|.+++++.+.++|..+...+.||..++.............. ........
T Consensus 150 ~Dl~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (297)
T COG3315 150 VDLREDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMR 229 (297)
T ss_pred ccccccchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhcc
Confidence 10 7788999999999999999999999887776542221100000 00000000
Q ss_pred --hhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEE
Q 035738 287 --DVLMMIQSPGGKERTRHEFMTLATGAGFSGISC 319 (333)
Q Consensus 287 --d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~ 319 (333)
+..... ..-......++..++.+.||..+..
T Consensus 230 ~~~~~~~e--~~~~~~~~~e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 230 GEDLDRGE--LVYFGDDPAEIETWLAERGWRSTLN 262 (297)
T ss_pred cccccccc--ceeccCCHHHHHHHHHhcCEEEEec
Confidence 000000 0111235789999999999987766
No 260
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=94.21 E-value=0.091 Score=46.70 Aligned_cols=51 Identities=14% Similarity=0.380 Sum_probs=40.5
Q ss_pred HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP 231 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 231 (333)
...+++.++ ......|+|||+|.|.++..|++.. .++++++. +..++..++
T Consensus 19 ~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~ 70 (262)
T PF00398_consen 19 ADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKE 70 (262)
T ss_dssp HHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHH
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHH
Confidence 456666666 7788999999999999999999988 67888888 666655443
No 261
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=94.20 E-value=0.048 Score=36.23 Aligned_cols=47 Identities=19% Similarity=0.357 Sum_probs=39.4
Q ss_pred HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738 34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
++.++..|.+. ++.|..+||+.+++ ++..+.++++-|...|++.+..
T Consensus 5 q~~iL~~l~~~---~~~~~~~la~~~~~----~~~~~t~~i~~L~~~g~I~r~~ 51 (59)
T PF01047_consen 5 QFRILRILYEN---GGITQSELAEKLGI----SRSTVTRIIKRLEKKGLIERER 51 (59)
T ss_dssp HHHHHHHHHHH---SSEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEecc
Confidence 34455666766 48999999999999 9999999999999999999873
No 262
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=94.19 E-value=0.18 Score=43.18 Aligned_cols=116 Identities=13% Similarity=0.111 Sum_probs=71.4
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hhH----hhhCCCCCCe---------------------EEEcc
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTK-YPYIKGINFDL-PHV----IEHVPPHPCM---------------------WILHD 240 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~----~~~a~~~~gv---------------------~vLh~ 240 (333)
+.++.+||-+|..+|.+...+..- -|+-.+..++. |.+ +..|++++|+ .++.+
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec
Confidence 678899999999999999998884 45777888887 543 4444444443 56666
Q ss_pred CCh-hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEE
Q 035738 241 WND-EHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISC 319 (333)
Q Consensus 241 ~~~-~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~ 319 (333)
... +++.-+..++..-||+||.+++.=-...-+...+ . .-...+=.+.|++.||++.+.
T Consensus 151 VaQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~-------------------p-~~vf~~e~~~L~~~~~~~~e~ 210 (229)
T PF01269_consen 151 VAQPDQARIAALNARHFLKPGGHLIISIKARSIDSTAD-------------------P-EEVFAEEVKKLKEEGFKPLEQ 210 (229)
T ss_dssp -SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSS-------------------H-HHHHHHHHHHHHCTTCEEEEE
T ss_pred CCChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCC-------------------H-HHHHHHHHHHHHHcCCChheE
Confidence 653 3445566777789999999887643211111000 0 001223345668889999888
Q ss_pred eecC
Q 035738 320 ERAI 323 (333)
Q Consensus 320 ~~~~ 323 (333)
....
T Consensus 211 i~Le 214 (229)
T PF01269_consen 211 ITLE 214 (229)
T ss_dssp EE-T
T ss_pred eccC
Confidence 8764
No 263
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=94.18 E-value=0.11 Score=33.29 Aligned_cols=43 Identities=23% Similarity=0.362 Sum_probs=37.6
Q ss_pred hhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 37 IFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 37 lfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
+++.|.+. ++.|+.+|++.+++ .+..+.+.|..|...|++.+.
T Consensus 5 il~~l~~~---~~~s~~~l~~~l~~----s~~tv~~~l~~L~~~g~i~~~ 47 (53)
T smart00420 5 ILELLAQQ---GKVSVEELAELLGV----SEMTIRRDLNKLEEQGLLTRV 47 (53)
T ss_pred HHHHHHHc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 45566654 47999999999999 999999999999999999986
No 264
>PRK11050 manganese transport regulator MntR; Provisional
Probab=94.17 E-value=0.23 Score=40.17 Aligned_cols=79 Identities=20% Similarity=0.213 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccC
Q 035738 10 DQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDA 89 (333)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~ 89 (333)
.+.|+.+...-.....-..+. -|...+... ++.+..+||+.+++ ++..+.++++.|...|++.+.
T Consensus 20 ~~~~~~~~~~~~~~~~e~~l~-----~I~~~l~~~---~~~t~~eLA~~l~i----s~stVsr~l~~Le~~GlI~r~--- 84 (152)
T PRK11050 20 VEGFRQVREAHRRELIEDYVE-----LIADLIAEV---GEARQVDIAARLGV----SQPTVAKMLKRLARDGLVEMR--- 84 (152)
T ss_pred HHHHHHHHHHHhHHHHHHHHH-----HHHHHHHhc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe---
Confidence 345666665555444444443 255566654 48999999999999 999999999999999999975
Q ss_pred CCcccccccccccccc
Q 035738 90 SGARRLYSLNSVSKYY 105 (333)
Q Consensus 90 ~~~~~~y~~t~~~~~l 105 (333)
....+.+|+.+..+
T Consensus 85 --~~~~v~LT~~G~~l 98 (152)
T PRK11050 85 --PYRGVFLTPEGEKL 98 (152)
T ss_pred --cCCceEECchHHHH
Confidence 23456666665443
No 265
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=94.12 E-value=0.11 Score=45.79 Aligned_cols=49 Identities=12% Similarity=0.321 Sum_probs=37.1
Q ss_pred HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhC
Q 035738 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHV 229 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a 229 (333)
...+++... ..+..+|+|||+|.|.++..|+++... ++++++ +..++..
T Consensus 19 ~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~~~--v~aiEiD~~l~~~L 68 (259)
T COG0030 19 IDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERAAR--VTAIEIDRRLAEVL 68 (259)
T ss_pred HHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhcCe--EEEEEeCHHHHHHH
Confidence 456777665 666889999999999999999999876 555666 4444443
No 266
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=94.07 E-value=0.21 Score=39.91 Aligned_cols=45 Identities=22% Similarity=0.155 Sum_probs=39.1
Q ss_pred ChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738 36 GIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 36 glfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
.++..|... +++|..+||+.+++ ++..+.++++-|...|+|.+.+
T Consensus 44 ~vL~~l~~~---~~~t~~eLa~~l~i----~~~tvsr~l~~Le~~GlI~R~~ 88 (144)
T PRK11512 44 KVLCSIRCA---ACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLP 88 (144)
T ss_pred HHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecc
Confidence 446666654 48999999999999 9999999999999999999874
No 267
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=94.03 E-value=0.2 Score=41.77 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=35.0
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCe---------EEEeec-hhHhhhCCCC
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIK---------GINFDL-PHVIEHVPPH 232 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~---------~~~~D~-~~~~~~a~~~ 232 (333)
+++...|+|-=||+|.++.+.+...++.. +++.|+ +.+++.++++
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N 80 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGAREN 80 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHH
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHH
Confidence 66778999999999999999887777666 899999 8888877654
No 268
>PRK11014 transcriptional repressor NsrR; Provisional
Probab=94.03 E-value=0.085 Score=42.14 Aligned_cols=60 Identities=13% Similarity=0.136 Sum_probs=45.2
Q ss_pred HHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccc
Q 035738 27 MAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLN 99 (333)
Q Consensus 27 ~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t 99 (333)
+++++.+.++.+ . ++.+.+.++||+.+|+ ++..+++.|+.|...|+++..+ | .++.|.+.
T Consensus 9 YAl~~~i~la~~---~---~g~~~s~~~ia~~~~i----s~~~vrk~l~~L~~~Glv~s~~--G-~~GG~~l~ 68 (141)
T PRK11014 9 YGLRALIYMASL---P---EGRMTSISEVTEVYGV----SRNHMVKIINQLSRAGYVTAVR--G-KNGGIRLG 68 (141)
T ss_pred HHHHHHHHHhcC---C---CCCccCHHHHHHHHCc----CHHHHHHHHHHHHhCCEEEEec--C-CCCCeeec
Confidence 455555554432 1 2247899999999999 9999999999999999999873 2 24567765
No 269
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=93.78 E-value=0.51 Score=41.53 Aligned_cols=102 Identities=14% Similarity=0.181 Sum_probs=65.4
Q ss_pred HHHHHHhhhhhh----hHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hhHhhhCCCC---CC-
Q 035738 165 HFNTVMYNYTSL----VMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTK-YPYIKGINFDL-PHVIEHVPPH---PC- 234 (333)
Q Consensus 165 ~f~~~m~~~~~~----~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~---~g- 234 (333)
.|..+|...+.. -...++..++ ..++.+|++-|.|+|.++.+++++ .|.-+.+-+|. ..-.+.+++. .+
T Consensus 77 LWTl~LphRTQI~Yt~Dia~I~~~L~-i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi 155 (314)
T KOG2915|consen 77 LWTLALPHRTQILYTPDIAMILSMLE-IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI 155 (314)
T ss_pred HhhhhccCcceEEecccHHHHHHHhc-CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC
Confidence 344555544442 2345666666 888999999999999999999986 47778888887 3344444331 11
Q ss_pred ---e--------------------EEEccCChhHHHHHHHHHHHhCCCCc-EEEEEeee
Q 035738 235 ---M--------------------WILHDWNDEHCLKLLKNCYKSIPEDG-KVIAVELM 269 (333)
Q Consensus 235 ---v--------------------~vLh~~~~~~~~~lL~~~~~~L~pgG-~l~i~e~~ 269 (333)
+ .|+-|++.+. ..+..++++|+.+| +++.+.++
T Consensus 156 ~~~vt~~hrDVc~~GF~~ks~~aDaVFLDlPaPw--~AiPha~~~lk~~g~r~csFSPC 212 (314)
T KOG2915|consen 156 GDNVTVTHRDVCGSGFLIKSLKADAVFLDLPAPW--EAIPHAAKILKDEGGRLCSFSPC 212 (314)
T ss_pred CcceEEEEeecccCCccccccccceEEEcCCChh--hhhhhhHHHhhhcCceEEeccHH
Confidence 1 4555566554 45666666777654 55555554
No 270
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=93.72 E-value=0.096 Score=35.88 Aligned_cols=59 Identities=15% Similarity=0.220 Sum_probs=43.6
Q ss_pred hhhHhhhcCCCCCCCHHHHHHHhCCCCCCC--cccHHHHHHHHhcccceeeeccCCCcccccccccccc
Q 035738 37 IFEIIDKAGPGAKLSASDIAAQLTTKNKDA--PMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSK 103 (333)
Q Consensus 37 lfd~L~~~~~~g~~t~~ela~~~g~~~~~~--~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~ 103 (333)
|++.|.+.+ +|++..+|++.+... +.+ +..+++.|++|...|++.+. ..+.+.+|+.+.
T Consensus 3 IL~~L~~~~--~P~g~~~l~~~L~~~-g~~~se~avRrrLr~me~~Glt~~~-----g~~G~~iT~~G~ 63 (66)
T PF08461_consen 3 ILRILAESD--KPLGRKQLAEELKLR-GEELSEEAVRRRLRAMERDGLTRKV-----GRQGRIITEKGL 63 (66)
T ss_pred HHHHHHHcC--CCCCHHHHHHHHHhc-ChhhhHHHHHHHHHHHHHCCCcccc-----CCcccccCHHHH
Confidence 567777764 799999999999762 223 58899999999999987764 234456776543
No 271
>COG4742 Predicted transcriptional regulator [Transcription]
Probab=93.68 E-value=0.082 Score=46.35 Aligned_cols=67 Identities=15% Similarity=0.191 Sum_probs=59.8
Q ss_pred HHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccccccccc
Q 035738 28 AMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVP 107 (333)
Q Consensus 28 ~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~~ 107 (333)
.+....+..|+-.|.+ ||.|.+||-..+++ ++..+..-++-|...|++.++ ++.|++|..+..++.
T Consensus 9 if~SekRk~lLllL~e----gPkti~EI~~~l~v----s~~ai~pqiKkL~~~~LV~~~------~~~Y~LS~~G~iiv~ 74 (260)
T COG4742 9 LFLSEKRKDLLLLLKE----GPKTIEEIKNELNV----SSSAILPQIKKLKDKGLVVQE------GDRYSLSSLGKIIVE 74 (260)
T ss_pred HHccHHHHHHHHHHHh----CCCCHHHHHHHhCC----CcHHHHHHHHHHhhCCCEEec------CCEEEecchHHHHHH
Confidence 5566778899999998 59999999999999 999999999999999999986 899999999987665
Q ss_pred C
Q 035738 108 N 108 (333)
Q Consensus 108 ~ 108 (333)
.
T Consensus 75 k 75 (260)
T COG4742 75 K 75 (260)
T ss_pred H
Confidence 4
No 272
>TIGR00122 birA_repr_reg BirA biotin operon repressor domain. This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.
Probab=93.61 E-value=0.13 Score=35.53 Aligned_cols=54 Identities=13% Similarity=0.277 Sum_probs=43.0
Q ss_pred HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccc
Q 035738 34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNS 100 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~ 100 (333)
++.++..|.+ ++.|..+||+++|+ ....+++-++.|...|+.... .+..|.+.+
T Consensus 2 ~~~il~~L~~----~~~~~~eLa~~l~v----S~~tv~~~l~~L~~~g~~i~~-----~~~g~~l~~ 55 (69)
T TIGR00122 2 PLRLLALLAD----NPFSGEKLGEALGM----SRTAVNKHIQTLREWGVDVLT-----VGKGYRLPP 55 (69)
T ss_pred hHHHHHHHHc----CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe-----cCCceEecC
Confidence 3457778887 48899999999999 999999999999999996654 145565543
No 273
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=93.58 E-value=0.17 Score=42.15 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=40.7
Q ss_pred hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
..|+++|..+ |++|.++||+.+|+ +...+++.|..|...|++...
T Consensus 25 ~~Vl~~L~~~---g~~tdeeLA~~Lgi----~~~~VRk~L~~L~e~gLv~~~ 69 (178)
T PRK06266 25 FEVLKALIKK---GEVTDEEIAEQTGI----KLNTVRKILYKLYDARLADYK 69 (178)
T ss_pred hHHHHHHHHc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence 3488888886 59999999999999 999999999999999999954
No 274
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=93.54 E-value=0.084 Score=45.07 Aligned_cols=63 Identities=27% Similarity=0.420 Sum_probs=48.2
Q ss_pred ChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCC---Ccccccccccccccc
Q 035738 36 GIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDAS---GARRLYSLNSVSKYY 105 (333)
Q Consensus 36 glfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~---~~~~~y~~t~~~~~l 105 (333)
-|...|.++ ||.|+.|||+++|+ ++..+++.|..|.+.|++......+ -..-.|++|..+..-
T Consensus 15 ~il~lL~~~---g~~sa~elA~~Lgi----s~~avR~HL~~Le~~Glv~~~~~~~g~GRP~~~y~Lt~~g~~~ 80 (218)
T COG2345 15 RILELLKKS---GPVSADELAEELGI----SPMAVRRHLDDLEAEGLVEVERQQGGRGRPAKLYRLTEKGREQ 80 (218)
T ss_pred HHHHHHhcc---CCccHHHHHHHhCC----CHHHHHHHHHHHHhCcceeeeeccCCCCCCceeeeecccchhh
Confidence 355566766 59999999999999 9999999999999999998764211 113348887776643
No 275
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=93.43 E-value=0.11 Score=42.16 Aligned_cols=47 Identities=19% Similarity=0.142 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccc
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSV 101 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~ 101 (333)
++.|+++||+..++ ++..++++|..|...|+++-.. | .+|.|.++.-
T Consensus 23 ~~~s~~eIA~~~~i----s~~~L~kIl~~L~~aGlv~S~r--G-~~GGy~La~~ 69 (153)
T PRK11920 23 KLSRIPEIARAYGV----SELFLFKILQPLVEAGLVETVR--G-RNGGVRLGRP 69 (153)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeec--C-CCCCeeecCC
Confidence 47899999999999 9999999999999999999873 3 3677887643
No 276
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=93.43 E-value=0.4 Score=43.41 Aligned_cols=41 Identities=17% Similarity=0.140 Sum_probs=32.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPP 231 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~ 231 (333)
..+-|||||||+|-++.-.+++.. .++..++...|.+.|++
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA-~~vYAvEAS~MAqyA~~ 217 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGA-KKVYAVEASEMAQYARK 217 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCc-ceEEEEehhHHHHHHHH
Confidence 456799999999999887666553 47888888888888775
No 277
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=93.42 E-value=0.13 Score=35.07 Aligned_cols=36 Identities=19% Similarity=0.212 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
=|.|+.|||+.+|++ ++..+.+.|++|...|++++.
T Consensus 24 ~~Pt~rEIa~~~g~~---S~~tv~~~L~~Le~kG~I~r~ 59 (65)
T PF01726_consen 24 YPPTVREIAEALGLK---STSTVQRHLKALERKGYIRRD 59 (65)
T ss_dssp S---HHHHHHHHTSS---SHHHHHHHHHHHHHTTSEEEG
T ss_pred CCCCHHHHHHHhCCC---ChHHHHHHHHHHHHCcCccCC
Confidence 377999999999993 599999999999999999986
No 278
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=93.24 E-value=0.8 Score=39.09 Aligned_cols=42 Identities=12% Similarity=0.164 Sum_probs=37.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP 231 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 231 (333)
...++.||||-+|.+...+++.+|...++..|+ +..++.|.+
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~ 58 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIR 58 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHH
Confidence 445599999999999999999999999999998 888877764
No 279
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial. The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.
Probab=93.23 E-value=0.12 Score=40.66 Aligned_cols=46 Identities=24% Similarity=0.277 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccc
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNS 100 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~ 100 (333)
++.|+.|||+++|+ ++..+.+.|+.|...|++.... | ..+.|.+..
T Consensus 24 ~~~s~~eia~~l~i----s~~~v~~~l~~L~~~Gli~~~~--g-~~ggy~l~~ 69 (130)
T TIGR02944 24 QPYSAAEIAEQTGL----NAPTVSKILKQLSLAGIVTSKR--G-VEGGYTLAR 69 (130)
T ss_pred CCccHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEecC--C-CCCChhhcC
Confidence 58999999999999 9999999999999999998641 2 245677643
No 280
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=93.21 E-value=0.17 Score=33.72 Aligned_cols=42 Identities=19% Similarity=0.335 Sum_probs=36.2
Q ss_pred hhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 37 IFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 37 lfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
|+..|.. ++.|..+|++.+|+ +...+.+.|+.|...|++...
T Consensus 2 il~~l~~----~~~~~~~i~~~l~i----s~~~v~~~l~~L~~~g~i~~~ 43 (66)
T smart00418 2 ILKLLAE----GELCVCELAEILGL----SQSTVSHHLKKLREAGLVESR 43 (66)
T ss_pred HHHHhhc----CCccHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeee
Confidence 3455553 48999999999999 899999999999999999975
No 281
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=93.15 E-value=0.14 Score=43.68 Aligned_cols=59 Identities=27% Similarity=0.344 Sum_probs=47.2
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccc
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSV 101 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~ 101 (333)
.+..++..|.+. ++.+..+||+.+++ ++.-+.+.|+.|...|++.+.. ..+..|.+|+.
T Consensus 144 ~~~~IL~~l~~~---g~~s~~eia~~l~i----s~stv~r~L~~Le~~GlI~r~~---~r~~~~~lT~~ 202 (203)
T TIGR01884 144 EELKVLEVLKAE---GEKSVKNIAKKLGK----SLSTISRHLRELEKKGLVEQKG---RKGKRYSLTKL 202 (203)
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEc---CCccEEEeCCC
Confidence 345677777775 48999999999999 9999999999999999999872 12455777654
No 282
>PRK06474 hypothetical protein; Provisional
Probab=93.13 E-value=0.16 Score=42.33 Aligned_cols=73 Identities=12% Similarity=0.205 Sum_probs=55.5
Q ss_pred HHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHh-CCCCCCCcccHHHHHHHHhcccceeeecc---CCCcccccccccc
Q 035738 26 PMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQL-TTKNKDAPMMLDRILRLLASYSVVECSLD---ASGARRLYSLNSV 101 (333)
Q Consensus 26 ~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~-g~~~~~~~~~l~~lL~~L~~~g~l~~~~~---~~~~~~~y~~t~~ 101 (333)
..+|.-..++.|++.|...+ ++.|+.+|++.+ ++ +..-+.|.|+.|...|+|..... .|.....|++++.
T Consensus 5 ~~~La~p~R~~Il~~L~~~~--~~~ta~el~~~l~~i----s~aTvYrhL~~L~e~GLI~~~~~~~~~~~~ek~y~~~~~ 78 (178)
T PRK06474 5 AEILMHPVRMKICQVLMRNK--EGLTPLELVKILKDV----PQATLYRHLQTMVDSGILHVVKEKKVRSVSEKYYAINEE 78 (178)
T ss_pred HHhhCCHHHHHHHHHHHhCC--CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEeecccccCceeEEEEeccc
Confidence 45677778899999998753 259999999999 57 77889999999999999998742 1112345777765
Q ss_pred ccc
Q 035738 102 SKY 104 (333)
Q Consensus 102 ~~~ 104 (333)
.-.
T Consensus 79 ~~~ 81 (178)
T PRK06474 79 DAK 81 (178)
T ss_pred eee
Confidence 543
No 283
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=93.08 E-value=0.093 Score=44.53 Aligned_cols=75 Identities=17% Similarity=0.259 Sum_probs=50.2
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CC-e-----------------EEEccCC
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PC-M-----------------WILHDWN 242 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~g-v-----------------~vLh~~~ 242 (333)
..+..+|+|.-||.|.++..+++..+..+++..|+ |..++..+++ .+ + .++-.++
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp 178 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP 178 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence 44678999999999999999999888888999999 8888766542 11 1 4444444
Q ss_pred hhHHHHHHHHHHHhCCCCcEE
Q 035738 243 DEHCLKLLKNCYKSIPEDGKV 263 (333)
Q Consensus 243 ~~~~~~lL~~~~~~L~pgG~l 263 (333)
. .+...|..+.+.+++||.+
T Consensus 179 ~-~~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 179 E-SSLEFLDAALSLLKEGGII 198 (200)
T ss_dssp S-SGGGGHHHHHHHEEEEEEE
T ss_pred H-HHHHHHHHHHHHhcCCcEE
Confidence 3 2346777777777777665
No 284
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=93.06 E-value=0.15 Score=41.38 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=44.5
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccccc
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYV 106 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~ 106 (333)
|++...+||+.+++ .|.-+...++-|...|++.+. ..+.+.+|+.+....
T Consensus 23 ~~~~~~diA~~L~V----sp~sVt~ml~rL~~~GlV~~~-----~y~gi~LT~~G~~~a 72 (154)
T COG1321 23 GFARTKDIAERLKV----SPPSVTEMLKRLERLGLVEYE-----PYGGVTLTEKGREKA 72 (154)
T ss_pred CcccHHHHHHHhCC----CcHHHHHHHHHHHHCCCeEEe-----cCCCeEEChhhHHHH
Confidence 69999999999999 999999999999999999997 378889998876444
No 285
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=93.02 E-value=0.2 Score=45.36 Aligned_cols=53 Identities=19% Similarity=0.231 Sum_probs=44.9
Q ss_pred HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP 231 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 231 (333)
..++++.+. ..++..+||.=+|.|..+..++++.|+.+++++|. |.+++.+++
T Consensus 9 l~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~ 62 (305)
T TIGR00006 9 LDEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKE 62 (305)
T ss_pred HHHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH
Confidence 456677665 56677999999999999999999988899999999 888887764
No 286
>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure. The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.
Probab=92.88 E-value=0.077 Score=38.80 Aligned_cols=62 Identities=23% Similarity=0.292 Sum_probs=46.3
Q ss_pred hhhHhhhcCCCCCCCHHHHHHHh-CCCCCCCcccHHHHHHHHhcccceeeeccC-CCccccccccccccccc
Q 035738 37 IFEIIDKAGPGAKLSASDIAAQL-TTKNKDAPMMLDRILRLLASYSVVECSLDA-SGARRLYSLNSVSKYYV 106 (333)
Q Consensus 37 lfd~L~~~~~~g~~t~~ela~~~-g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~-~~~~~~y~~t~~~~~l~ 106 (333)
|+..|.. |+....||.+.+ |+ ++..|.+-|+.|...|++.+.... .+..-.|++|+.+..+.
T Consensus 10 IL~~l~~----g~~rf~el~~~l~~i----s~~~L~~~L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~G~~l~ 73 (90)
T PF01638_consen 10 ILRALFQ----GPMRFSELQRRLPGI----SPKVLSQRLKELEEAGLVERRVYPEVPPRVEYSLTEKGKELL 73 (90)
T ss_dssp HHHHHTT----SSEEHHHHHHHSTTS-----HHHHHHHHHHHHHTTSEEEEEESSSSSEEEEEE-HHHHHHH
T ss_pred HHHHHHh----CCCcHHHHHHhcchh----HHHHHHHHHHHHHHcchhhcccccCCCCCCccCCCcCHHHHH
Confidence 4455565 599999999999 89 999999999999999999986421 12234588888886655
No 287
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=92.86 E-value=0.18 Score=43.13 Aligned_cols=32 Identities=22% Similarity=0.448 Sum_probs=30.2
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec
Q 035738 191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDL 222 (333)
Q Consensus 191 ~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~ 222 (333)
..+++|||.|.|.-+..++-.+|+++++.+|.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles 99 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLES 99 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEcc
Confidence 68999999999999999999999999998885
No 288
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=92.81 E-value=0.15 Score=38.56 Aligned_cols=46 Identities=20% Similarity=0.344 Sum_probs=41.4
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceee
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVEC 85 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~ 85 (333)
.+..|+..|.+. ++.|..+||+++|+ ++..+.+.++.|...|++.+
T Consensus 4 ~D~~il~~L~~~---~~~~~~~la~~l~~----s~~tv~~~l~~L~~~g~i~~ 49 (108)
T smart00344 4 IDRKILEELQKD---ARISLAELAKKVGL----SPSTVHNRVKRLEEEGVIKG 49 (108)
T ss_pred HHHHHHHHHHHh---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeec
Confidence 456788888886 48999999999999 99999999999999999994
No 289
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=92.66 E-value=0.2 Score=35.20 Aligned_cols=44 Identities=18% Similarity=0.288 Sum_probs=39.5
Q ss_pred hhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738 37 IFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 37 lfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
|=|.|+.+ |..++.+||.++++ +++.++-+|..++.+|-+++.+
T Consensus 7 lRd~l~~~---gr~s~~~Ls~~~~~----p~~~VeaMLe~l~~kGkverv~ 50 (78)
T PRK15431 7 VRDLLALR---GRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVRIQ 50 (78)
T ss_pred HHHHHHHc---CcccHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEeec
Confidence 44678876 59999999999999 9999999999999999999873
No 290
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=92.64 E-value=0.21 Score=32.80 Aligned_cols=34 Identities=29% Similarity=0.336 Sum_probs=31.8
Q ss_pred CC-CHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 49 KL-SASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 49 ~~-t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
.. |..+||+.+|+ +...+++.|+.|...|++...
T Consensus 19 ~l~s~~~la~~~~v----s~~tv~~~l~~L~~~g~i~~~ 53 (60)
T smart00345 19 KLPSERELAAQLGV----SRTTVREALSRLEAEGLVQRR 53 (60)
T ss_pred cCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 55 89999999999 999999999999999999876
No 291
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=92.59 E-value=0.19 Score=34.57 Aligned_cols=45 Identities=24% Similarity=0.377 Sum_probs=38.3
Q ss_pred HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
+..++..+... +.+..||++.+|+ +...+.+.|+.|...|++...
T Consensus 9 ~~~il~~l~~~----~~~~~ei~~~~~i----~~~~i~~~l~~L~~~g~i~~~ 53 (78)
T cd00090 9 RLRILRLLLEG----PLTVSELAERLGL----SQSTVSRHLKKLEEAGLVESR 53 (78)
T ss_pred HHHHHHHHHHC----CcCHHHHHHHHCc----CHhHHHHHHHHHHHCCCeEEE
Confidence 34456666663 5899999999999 899999999999999999976
No 292
>COG4189 Predicted transcriptional regulator [Transcription]
Probab=92.58 E-value=0.21 Score=42.57 Aligned_cols=55 Identities=13% Similarity=0.280 Sum_probs=49.5
Q ss_pred HHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738 26 PMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 26 ~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
-++|...++..|++.|... ||+.+.|||+++|+ ++.-+.--+..|...|+++...
T Consensus 17 ~kalaS~vRv~Il~lL~~k---~plNvneiAe~lgL----pqst~s~~ik~Le~aGlirT~t 71 (308)
T COG4189 17 LKALASKVRVAILQLLHRK---GPLNVNEIAEALGL----PQSTMSANIKVLEKAGLIRTET 71 (308)
T ss_pred HHHHHHHHHHHHHHHHHHh---CCCCHHHHHHHhCC----chhhhhhhHHHHHhcCceeeee
Confidence 4578889999999999987 59999999999999 8888999999999999998764
No 293
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=92.31 E-value=0.22 Score=33.35 Aligned_cols=35 Identities=29% Similarity=0.439 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
++.+..+||+.+|+ .+.-+...++-|...|+++..
T Consensus 21 ~~v~~~~iA~~L~v----s~~tvt~ml~~L~~~GlV~~~ 55 (60)
T PF01325_consen 21 GPVRTKDIAERLGV----SPPTVTEMLKRLAEKGLVEYE 55 (60)
T ss_dssp SSBBHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred CCccHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEec
Confidence 69999999999999 999999999999999999986
No 294
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=92.21 E-value=5.2 Score=35.61 Aligned_cols=63 Identities=16% Similarity=0.117 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEee
Q 035738 245 HCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCER 321 (333)
Q Consensus 245 ~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 321 (333)
...+.|+.+.+.|||||.++=+-+..-... +.. ......-+.+.+|++++.+..||++++-..
T Consensus 180 Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~------------~~~--~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 180 NIIEYIETIEHLLKPGGYWINFGPLLYHFE------------PMS--IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred HHHHHHHHHHHHhccCCEEEecCCccccCC------------CCC--CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 467899999999999996654444332211 000 000123577899999999999999887654
No 295
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=92.17 E-value=1.2 Score=40.25 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhCCCCcEEEEEee
Q 035738 246 CLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 246 ~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
-.++|.++-..++||..++|+|.
T Consensus 221 Tt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 221 TTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred HHHHHHHHHhhcCCCcEEEEEcC
Confidence 35789999999999999999997
No 296
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=92.04 E-value=0.2 Score=40.79 Aligned_cols=45 Identities=9% Similarity=0.068 Sum_probs=39.8
Q ss_pred hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
..|+++|..+ |.+|-+|||+.+|+ +..-++++|..|...|++.+.
T Consensus 17 v~Vl~aL~~~---~~~tdEeLa~~Lgi----~~~~VRk~L~~L~e~~Lv~~~ 61 (158)
T TIGR00373 17 GLVLFSLGIK---GEFTDEEISLELGI----KLNEVRKALYALYDAGLADYK 61 (158)
T ss_pred HHHHHHHhcc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCceee
Confidence 4578888865 58999999999999 999999999999999999654
No 297
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=91.89 E-value=0.92 Score=35.47 Aligned_cols=76 Identities=14% Similarity=0.249 Sum_probs=48.3
Q ss_pred EEEEcCCccHHHHHHHHHCCC-CeEEEeec-hhHhhhCCCCC-----C-e-------------------------EEEcc
Q 035738 194 LVDVGGGIGVTLQAITTKYPY-IKGINFDL-PHVIEHVPPHP-----C-M-------------------------WILHD 240 (333)
Q Consensus 194 vlDVGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~-----g-v-------------------------~vLh~ 240 (333)
++|+|||+|... .+....+. ..++++|. +.++..++... + + ...+.
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999987 33443333 46777887 55544322110 0 1 11111
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 035738 241 WNDEHCLKLLKNCYKSIPEDGKVIAVELMLPE 272 (333)
Q Consensus 241 ~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~ 272 (333)
+.+ ....++++.+.++|+|.+++.+.....
T Consensus 131 ~~~--~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 131 LLP--PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred cCC--HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 111 358999999999999999998886554
No 298
>COG4190 Predicted transcriptional regulator [Transcription]
Probab=91.83 E-value=0.28 Score=37.97 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=44.8
Q ss_pred HHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 29 MQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 29 l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
+.+--.+.|.+.|++. +|.|+.|+|+.+|- +...+.|-|+.|...|++...
T Consensus 61 vLsp~nleLl~~Ia~~---~P~Si~ElAe~vgR----dv~nvhr~Ls~l~~~GlI~fe 111 (144)
T COG4190 61 VLSPRNLELLELIAQE---EPASINELAELVGR----DVKNVHRTLSTLADLGLIFFE 111 (144)
T ss_pred HhChhHHHHHHHHHhc---CcccHHHHHHHhCc----chHHHHHHHHHHHhcCeEEEe
Confidence 3344567788899987 59999999999999 999999999999999999987
No 299
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=91.72 E-value=0.4 Score=32.14 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=30.6
Q ss_pred CCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 50 LSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 50 ~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
.|..+||+.+|+ +...+++.|..|...|+++..
T Consensus 26 ~~~~~la~~~~i----s~~~v~~~l~~L~~~G~i~~~ 58 (66)
T cd07377 26 PSERELAEELGV----SRTTVREALRELEAEGLVERR 58 (66)
T ss_pred CCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec
Confidence 459999999999 999999999999999999875
No 300
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=91.59 E-value=0.3 Score=31.81 Aligned_cols=40 Identities=15% Similarity=0.333 Sum_probs=32.9
Q ss_pred ChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhccc
Q 035738 36 GIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYS 81 (333)
Q Consensus 36 glfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g 81 (333)
.|+..|.+.+ ++.|+++||+.+++ +.+-+++-+..|...|
T Consensus 4 ~il~~L~~~~--~~it~~eLa~~l~v----S~rTi~~~i~~L~~~~ 43 (55)
T PF08279_consen 4 QILKLLLESK--EPITAKELAEELGV----SRRTIRRDIKELREWG 43 (55)
T ss_dssp HHHHHHHHTT--TSBEHHHHHHHCTS-----HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcC--CCcCHHHHHHHhCC----CHHHHHHHHHHHHHCC
Confidence 4566674432 57999999999999 9999999999999999
No 301
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=91.53 E-value=0.27 Score=44.48 Aligned_cols=54 Identities=26% Similarity=0.260 Sum_probs=41.5
Q ss_pred HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH 232 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~ 232 (333)
..++++.+. ..+...+||.=-|.|.++..+++++|+.+++++|. |.+++.+++.
T Consensus 9 l~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~ 63 (310)
T PF01795_consen 9 LKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKER 63 (310)
T ss_dssp HHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCC
T ss_pred HHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHH
Confidence 456777776 67778999999999999999999999999999999 8898777653
No 302
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=91.42 E-value=0.59 Score=40.79 Aligned_cols=65 Identities=12% Similarity=0.185 Sum_probs=48.4
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCCCCeEEEccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCMWILHDWNDEHCLKLLKNCYKSIPEDGKVIAVE 267 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~gv~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e 267 (333)
...+.+|+|||||--=++.......|+..+++.|+. ...+++++.+...|++.+.+.+.|
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID--------------------~~~ve~l~~~l~~l~~~~~~~v~D 162 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDID--------------------SQLVEFLNAFLAVLGVPHDARVRD 162 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESB--------------------HHHHHHHHHHHHHTT-CEEEEEE-
T ss_pred CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCC--------------------HHHHHHHHHHHHhhCCCcceeEee
Confidence 346899999999999999998988899999999973 234468888889999999999998
Q ss_pred eecCC
Q 035738 268 LMLPE 272 (333)
Q Consensus 268 ~~~~~ 272 (333)
.....
T Consensus 163 l~~~~ 167 (251)
T PF07091_consen 163 LLSDP 167 (251)
T ss_dssp TTTSH
T ss_pred eeccC
Confidence 87653
No 303
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=91.04 E-value=0.58 Score=37.28 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=37.7
Q ss_pred hhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738 37 IFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 37 lfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
++..|...+ ++.|..+||+.+++ ++..+.+.++-|...|+|.+..
T Consensus 36 vL~~l~~~~--~~~t~~eLa~~l~~----~~~tvt~~v~~Le~~GlV~r~~ 80 (144)
T PRK03573 36 TLHNIHQLP--PEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLISRQT 80 (144)
T ss_pred HHHHHHHcC--CCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeec
Confidence 455555432 36899999999999 9999999999999999999974
No 304
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=90.81 E-value=0.23 Score=37.19 Aligned_cols=73 Identities=18% Similarity=0.203 Sum_probs=24.9
Q ss_pred EEEcCCccHHHHHHHHHCCCC---eEEEeec-h---hHhhhCCCC--C-Ce--------------------EEEccC--C
Q 035738 195 VDVGGGIGVTLQAITTKYPYI---KGINFDL-P---HVIEHVPPH--P-CM--------------------WILHDW--N 242 (333)
Q Consensus 195 lDVGgG~G~~~~~l~~~~p~~---~~~~~D~-~---~~~~~a~~~--~-gv--------------------~vLh~~--~ 242 (333)
||||+..|..+..+++..+.. +++.+|. + ...+..++. . .+ .++-+- +
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H~ 80 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDHS 80 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCCC
Confidence 689999999999988877654 5799998 5 233333321 1 11 222222 2
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEe
Q 035738 243 DEHCLKLLKNCYKSIPEDGKVIAVE 267 (333)
Q Consensus 243 ~~~~~~lL~~~~~~L~pgG~l~i~e 267 (333)
.+.+..-|+.+.+.|+|||.+++-|
T Consensus 81 ~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 81 YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 3456677888888888988887765
No 305
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=90.75 E-value=4.6 Score=37.11 Aligned_cols=79 Identities=15% Similarity=0.095 Sum_probs=55.3
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CCe----------------------EEEccC
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PCM----------------------WILHDW 241 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~gv----------------------~vLh~~ 241 (333)
..++..|||==||||.++.+..- -+++++|.|+ ..+++-++.+ -++ .+..+.
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl--~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP 272 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGL--MGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP 272 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhh--cCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence 55778999999999999997654 3477899999 6788888764 111 122221
Q ss_pred C------------hhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738 242 N------------DEHCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 242 ~------------~~~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
| ++-..+.|+.+.++|++||++++.-+
T Consensus 273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 273 PYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 1 22245678888888888888777655
No 306
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=90.64 E-value=0.42 Score=36.52 Aligned_cols=52 Identities=25% Similarity=0.300 Sum_probs=40.4
Q ss_pred HhChhhHhhhcCCCCCCCHHHHHHHhCCCCC-CCcccHHHHHHHHhcccceeeec
Q 035738 34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNK-DAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~-~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
+.-|++.|...+ ++.|++||.+++.-+.+ .+..-+.|.|+.|+..|++.+..
T Consensus 3 R~~Il~~l~~~~--~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~~~ 55 (116)
T cd07153 3 RLAILEVLLESD--GHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVREIE 55 (116)
T ss_pred HHHHHHHHHhCC--CCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEEEE
Confidence 445788887643 58999999999942111 17788999999999999999874
No 307
>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element. iron dependent repressor
Probab=90.53 E-value=0.27 Score=36.14 Aligned_cols=46 Identities=24% Similarity=0.332 Sum_probs=38.0
Q ss_pred HHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccccc
Q 035738 52 ASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYV 106 (333)
Q Consensus 52 ~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~ 106 (333)
+.+||+.+|+ ++..+.+.++.|...|++.+.+ +..|.+|+.+..+.
T Consensus 2 ~~ela~~l~i----s~stvs~~l~~L~~~glI~r~~-----~~~~~lT~~g~~~~ 47 (96)
T smart00529 2 TSEIAERLNV----SPPTVTQMLKKLEKDGLVEYEP-----YRGITLTEKGRRLA 47 (96)
T ss_pred HHHHHHHhCC----ChHHHHHHHHHHHHCCCEEEcC-----CCceEechhHHHHH
Confidence 4689999999 9999999999999999999972 34677777665443
No 308
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=90.45 E-value=0.85 Score=33.67 Aligned_cols=44 Identities=14% Similarity=0.116 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccc
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLN 99 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t 99 (333)
.++|..|||+.+|+ ++..+.|.|..|...|+|.+.. ..+.|+.+
T Consensus 46 ~~is~~eLa~~~g~----sr~tVsr~L~~Le~~GlI~r~~----~~~~~~~n 89 (95)
T TIGR01610 46 DRVTATVIAELTGL----SRTHVSDAIKSLARRRIIFRQG----MMGIVGVN 89 (95)
T ss_pred CccCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeeec----CCceeecC
Confidence 38999999999999 9999999999999999999861 13566655
No 309
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=90.43 E-value=0.28 Score=28.24 Aligned_cols=31 Identities=26% Similarity=0.368 Sum_probs=25.8
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccce
Q 035738 49 KLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVV 83 (333)
Q Consensus 49 ~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l 83 (333)
|+|-+|||+.+|+ .+.-+.|.|..|...|++
T Consensus 2 ~mtr~diA~~lG~----t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 2 PMTRQDIADYLGL----TRETVSRILKKLERQGLI 32 (32)
T ss_dssp E--HHHHHHHHTS-----HHHHHHHHHHHHHTTSE
T ss_pred CcCHHHHHHHhCC----cHHHHHHHHHHHHHcCCC
Confidence 5789999999999 999999999999988875
No 310
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=90.38 E-value=0.85 Score=42.77 Aligned_cols=44 Identities=27% Similarity=0.527 Sum_probs=31.2
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHH----HHHHHHHC---CCCeEEEeech
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVT----LQAITTKY---PYIKGINFDLP 223 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~----~~~l~~~~---p~~~~~~~D~~ 223 (333)
..+++.+. -....+|+|+|.|.|.- ...|+.+. |.+++|+++.|
T Consensus 100 qaIleA~~-g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~ 150 (374)
T PF03514_consen 100 QAILEAFE-GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPP 150 (374)
T ss_pred HHHHHHhc-cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCC
Confidence 45666665 45678999999999963 33444443 77889999883
No 311
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=90.24 E-value=1.1 Score=42.04 Aligned_cols=76 Identities=11% Similarity=0.179 Sum_probs=55.3
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hhHhhhCCCC------CCe-------------------EE-EccCC
Q 035738 191 IKQLVDVGGGIGVTLQAITTKYPY-IKGINFDL-PHVIEHVPPH------PCM-------------------WI-LHDWN 242 (333)
Q Consensus 191 ~~~vlDVGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~gv-------------------~v-Lh~~~ 242 (333)
..+|||.-||+|..+.+++.+.++ -+++..|+ |..++.++++ .++ .| +--+.
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDPfG 124 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDPFG 124 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCCCC
Confidence 368999999999999999998654 46889999 8888776543 111 11 11122
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738 243 DEHCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 243 ~~~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
. ....+..+.+.+++||.|.|.-+
T Consensus 125 s--~~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 125 T--PAPFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred C--cHHHHHHHHHhcccCCEEEEEec
Confidence 1 13688899999999999999854
No 312
>COG1378 Predicted transcriptional regulators [Transcription]
Probab=90.10 E-value=0.49 Score=41.56 Aligned_cols=59 Identities=17% Similarity=0.173 Sum_probs=47.3
Q ss_pred HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccc
Q 035738 32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNS 100 (333)
Q Consensus 32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~ 100 (333)
..|..++-+|-.. |+.|+.|||+.+|+ +...+...|+.|...|++...+ | .+..|+.-+
T Consensus 16 ~yEa~vY~aLl~~---g~~tA~eis~~sgv----P~~kvY~vl~sLe~kG~v~~~~--g-~P~~y~av~ 74 (247)
T COG1378 16 EYEAKVYLALLCL---GEATAKEISEASGV----PRPKVYDVLRSLEKKGLVEVIE--G-RPKKYRAVP 74 (247)
T ss_pred HHHHHHHHHHHHh---CCccHHHHHHHcCC----CchhHHHHHHHHHHCCCEEeeC--C-CCceEEeCC
Confidence 3455666677765 59999999999999 8999999999999999999862 2 466777543
No 313
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=90.05 E-value=0.37 Score=44.76 Aligned_cols=80 Identities=16% Similarity=0.176 Sum_probs=55.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---------C------------------Ce---EEE
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---------P------------------CM---WIL 238 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~------------------gv---~vL 238 (333)
+...++|+|||.|.....+.. +...+.+++|. +.-+..+... . ++ .+.
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~ 188 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV 188 (364)
T ss_pred ccccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence 445899999999999887655 55566777777 4333332211 0 11 444
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 035738 239 HDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPE 272 (333)
Q Consensus 239 h~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~ 272 (333)
.+.++.. .++++++++++|||.+++.|.+...
T Consensus 189 ~~~~~~~--~~y~Ei~rv~kpGG~~i~~e~i~~~ 220 (364)
T KOG1269|consen 189 CHAPDLE--KVYAEIYRVLKPGGLFIVKEWIKTA 220 (364)
T ss_pred ccCCcHH--HHHHHHhcccCCCceEEeHHHHHhh
Confidence 5555554 8999999999999999999987654
No 314
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=90.04 E-value=0.64 Score=35.81 Aligned_cols=53 Identities=13% Similarity=0.177 Sum_probs=47.0
Q ss_pred HHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 27 MAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 27 ~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
+-=+..++..|.+.+.++ |..|..+++..+|+ +..-+.++++.|++-|-|...
T Consensus 7 ~eer~eLk~rIvElVRe~---GRiTi~ql~~~TGa----sR~Tvk~~lreLVa~G~l~~~ 59 (127)
T PF06163_consen 7 PEEREELKARIVELVREH---GRITIKQLVAKTGA----SRNTVKRYLRELVARGDLYRH 59 (127)
T ss_pred HHHHHHHHHHHHHHHHHc---CCccHHHHHHHHCC----CHHHHHHHHHHHHHcCCeEeC
Confidence 344567788899999998 59999999999999 999999999999999999975
No 315
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=89.77 E-value=5.4 Score=36.05 Aligned_cols=65 Identities=18% Similarity=0.209 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEee
Q 035738 244 EHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCER 321 (333)
Q Consensus 244 ~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 321 (333)
..+...|..+...|+|||.++=+-+..-.-.... +.. -..+-+.+.+++.++.+.-||.+++-..
T Consensus 273 ~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~---------g~~----~~~siEls~edl~~v~~~~GF~~~ke~~ 337 (369)
T KOG2798|consen 273 HNILEYIDTIYKILKPGGVWINLGPLLYHFEDTH---------GVE----NEMSIELSLEDLKRVASHRGFEVEKERG 337 (369)
T ss_pred HHHHHHHHHHHHhccCCcEEEeccceeeeccCCC---------CCc----ccccccccHHHHHHHHHhcCcEEEEeee
Confidence 4567899999999999999887766543211100 000 0124577899999999999999887553
No 316
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=89.41 E-value=0.47 Score=43.15 Aligned_cols=42 Identities=17% Similarity=0.143 Sum_probs=32.7
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHH-------CCCCeEEEeec-hhHhhhC
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTK-------YPYIKGINFDL-PHVIEHV 229 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~-------~p~~~~~~~D~-~~~~~~a 229 (333)
.....+|+|-.||+|.++.++.+. .+..+++|+|+ +.++..+
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la 93 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALA 93 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHH
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHH
Confidence 556779999999999999998874 47888999999 6665544
No 317
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=89.39 E-value=0.75 Score=39.06 Aligned_cols=83 Identities=17% Similarity=0.234 Sum_probs=44.5
Q ss_pred CCCeEEEEcCCccHHHHH---HHHHC-CCCeEEEeec-hhHh--hhCCCC---CCe------------------------
Q 035738 190 NIKQLVDVGGGIGVTLQA---ITTKY-PYIKGINFDL-PHVI--EHVPPH---PCM------------------------ 235 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~---l~~~~-p~~~~~~~D~-~~~~--~~a~~~---~gv------------------------ 235 (333)
++.+|+++|--.|..+.- +++.. ++.+++++|+ .... +..+.+ +.+
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 468899999777766654 45555 7889999998 2221 111111 111
Q ss_pred --EEEcc--CChhHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 035738 236 --WILHD--WNDEHCLKLLKNCYKSIPEDGKVIAVELMLPE 272 (333)
Q Consensus 236 --~vLh~--~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~ 272 (333)
.|.-+ .+.+.+.+.|+.....++||++++|.|+....
T Consensus 112 ~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~ 152 (206)
T PF04989_consen 112 PVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIED 152 (206)
T ss_dssp SEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHHHHH
T ss_pred ceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEeccccc
Confidence 22222 22345678899999999999999999986543
No 318
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=88.89 E-value=0.4 Score=42.27 Aligned_cols=64 Identities=13% Similarity=0.041 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEee
Q 035738 244 EHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCER 321 (333)
Q Consensus 244 ~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 321 (333)
+.-.+.++++.+.|||||.|++........ ...+-..+ ..-..+.+.+++.|+++||.+.+...
T Consensus 176 ~~y~~al~ni~~lLkpGG~Lil~~~l~~t~----------Y~vG~~~F----~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 176 DEYRRALRNISSLLKPGGHLILAGVLGSTY----------YMVGGHKF----PCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEEEESS-SE----------EEETTEEE----E---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEcCcee----------EEECCEec----ccccCCHHHHHHHHHHcCCEEEeccc
Confidence 344689999999999999999988743220 00000000 11134689999999999999888774
No 319
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=88.73 E-value=0.44 Score=40.87 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccccc
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYV 106 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~ 106 (333)
..+|..+||+.+++ ++..+.+.|+.|...|++++... +....+.+|+.+..++
T Consensus 20 ~~IS~~eLA~~L~i----S~~Tvsr~Lk~LEe~GlI~R~~~--~r~~~v~LTekG~~ll 72 (217)
T PRK14165 20 VKISSSEFANHTGT----SSKTAARILKQLEDEGYITRTIV--PRGQLITITEKGLDVL 72 (217)
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEEc--CCceEEEECHHHHHHH
Confidence 36899999999999 99999999999999999998731 1245566666665443
No 320
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=88.51 E-value=1 Score=37.26 Aligned_cols=47 Identities=15% Similarity=0.111 Sum_probs=40.3
Q ss_pred CCCHHHHHHHh--CCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccc
Q 035738 49 KLSASDIAAQL--TTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKY 104 (333)
Q Consensus 49 ~~t~~ela~~~--g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~ 104 (333)
..++++||+++ ++ ...-++.-|+.|..+|+++++ .++.|..|..+-.
T Consensus 39 ~~d~~~iak~l~p~i----s~~ev~~sL~~L~~~gli~k~-----~~g~y~~t~~~l~ 87 (171)
T PF14394_consen 39 APDPEWIAKRLRPKI----SAEEVRDSLEFLEKLGLIKKD-----GDGKYVQTDKSLT 87 (171)
T ss_pred CCCHHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEEC-----CCCcEEEecceee
Confidence 34899999999 99 999999999999999999997 3578988875533
No 321
>PHA02943 hypothetical protein; Provisional
Probab=88.43 E-value=0.72 Score=36.75 Aligned_cols=43 Identities=21% Similarity=0.163 Sum_probs=37.9
Q ss_pred ChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 36 GIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 36 glfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
.+.+.|.. |..|..|||+++|+ +...++-.|..|...|.+.+.
T Consensus 15 eILE~Lk~----G~~TtseIAkaLGl----S~~qa~~~LyvLErEG~VkrV 57 (165)
T PHA02943 15 KTLRLLAD----GCKTTSRIANKLGV----SHSMARNALYQLAKEGMVLKV 57 (165)
T ss_pred HHHHHHhc----CCccHHHHHHHHCC----CHHHHHHHHHHHHHcCceEEE
Confidence 45666733 58999999999999 999999999999999999987
No 322
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=88.35 E-value=0.64 Score=37.62 Aligned_cols=47 Identities=15% Similarity=0.264 Sum_probs=42.6
Q ss_pred HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceee
Q 035738 32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVEC 85 (333)
Q Consensus 32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~ 85 (333)
..+..|.+.|.+. |..|..+||+++|+ ++..+++=++-|...|++..
T Consensus 9 ~~D~~Il~~Lq~d---~R~s~~eiA~~lgl----S~~tV~~Ri~rL~~~GvI~~ 55 (153)
T PRK11179 9 NLDRGILEALMEN---ARTPYAELAKQFGV----SPGTIHVRVEKMKQAGIITG 55 (153)
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeee
Confidence 3577889999986 59999999999999 99999999999999999984
No 323
>PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors. Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A.
Probab=88.34 E-value=0.39 Score=36.12 Aligned_cols=43 Identities=23% Similarity=0.351 Sum_probs=33.7
Q ss_pred hhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 37 IFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 37 lfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
|++.|..+ |.++-++||+.+|+ ++.-++++|..|...|++...
T Consensus 18 Il~~L~~~---~~l~de~la~~~~l----~~~~vRkiL~~L~~~~lv~~~ 60 (105)
T PF02002_consen 18 ILDALLRK---GELTDEDLAKKLGL----KPKEVRKILYKLYEDGLVSYR 60 (105)
T ss_dssp HHHHHHHH-----B-HHHHHHTT-S-----HHHHHHHHHHHHHHSS-EEE
T ss_pred HHHHHHHc---CCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCeEEE
Confidence 67888866 48999999999999 999999999999999999765
No 324
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.
Probab=88.01 E-value=0.69 Score=35.03 Aligned_cols=51 Identities=18% Similarity=0.206 Sum_probs=40.4
Q ss_pred HHHhChhhHhh--hcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738 32 VYELGIFEIID--KAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 32 a~~lglfd~L~--~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
..+..++..|. .. ++++.|..+||+.+++ ++..+.+.++.|...|++.+..
T Consensus 25 ~~q~~vL~~l~~~~~-~~~~~t~~eL~~~l~~----~~stvs~~i~~Le~kg~I~r~~ 77 (109)
T TIGR01889 25 LEELLILYYLGKLEN-NEGKLTLKEIIKEILI----KQSALVKIIKKLSKKGYLSKER 77 (109)
T ss_pred HHHHHHHHHHHhhhc-cCCcCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeccC
Confidence 34455566665 11 1158999999999999 9999999999999999999863
No 325
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=87.86 E-value=0.35 Score=47.54 Aligned_cols=40 Identities=15% Similarity=0.187 Sum_probs=31.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCC--------CeEEEeec-hhHhhhC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPY--------IKGINFDL-PHVIEHV 229 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~--------~~~~~~D~-~~~~~~a 229 (333)
...+|+|.+||+|.++..++.+.+. .+++++|+ +.+++.+
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a 79 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRA 79 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHH
Confidence 4569999999999999999887642 56788998 6666544
No 326
>COG2512 Predicted membrane-associated trancriptional regulator [Transcription]
Probab=87.74 E-value=0.62 Score=41.12 Aligned_cols=49 Identities=22% Similarity=0.394 Sum_probs=44.0
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
.+..+.+.|.++| |.++-+||.+++|+ +..-+.|.|+-|..+|++++..
T Consensus 196 ~e~~il~~i~~~G--Gri~Q~eL~r~lgl----sktTvsR~L~~LEk~GlIe~~K 244 (258)
T COG2512 196 DEKEILDLIRERG--GRITQAELRRALGL----SKTTVSRILRRLEKRGLIEKEK 244 (258)
T ss_pred HHHHHHHHHHHhC--CEEeHHHHHHhhCC----ChHHHHHHHHHHHhCCceEEEE
Confidence 3566788888876 78999999999999 9999999999999999999974
No 327
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=87.70 E-value=0.64 Score=38.08 Aligned_cols=47 Identities=13% Similarity=0.221 Sum_probs=43.0
Q ss_pred HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceee
Q 035738 32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVEC 85 (333)
Q Consensus 32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~ 85 (333)
..+..|++.|.+. |..|..+||+++|+ .+..+.+=++-|...|+++.
T Consensus 14 ~~D~~IL~~Lq~d---~R~s~~eiA~~lgl----S~~tv~~Ri~rL~~~GvI~~ 60 (164)
T PRK11169 14 RIDRNILNELQKD---GRISNVELSKRVGL----SPTPCLERVRRLERQGFIQG 60 (164)
T ss_pred HHHHHHHHHhccC---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence 4688899999986 59999999999999 99999999999999999984
No 328
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=86.99 E-value=2.8 Score=42.84 Aligned_cols=55 Identities=22% Similarity=0.167 Sum_probs=39.4
Q ss_pred hHHHHHhhccCC-CCCCeEEEEcCCccHHHHHHHHHC------------------------------------------C
Q 035738 177 VMSNILESYKGF-DNIKQLVDVGGGIGVTLQAITTKY------------------------------------------P 213 (333)
Q Consensus 177 ~~~~~~~~~~~~-~~~~~vlDVGgG~G~~~~~l~~~~------------------------------------------p 213 (333)
.+..++.... + ++...++|-.||+|.++++.+... .
T Consensus 177 lAaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~ 255 (702)
T PRK11783 177 LAAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAEL 255 (702)
T ss_pred HHHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence 3444554333 6 557899999999999998876421 1
Q ss_pred CCeEEEeec-hhHhhhCCCC
Q 035738 214 YIKGINFDL-PHVIEHVPPH 232 (333)
Q Consensus 214 ~~~~~~~D~-~~~~~~a~~~ 232 (333)
..+++++|+ +.+++.|+.+
T Consensus 256 ~~~i~G~Did~~av~~A~~N 275 (702)
T PRK11783 256 PSKFYGSDIDPRVIQAARKN 275 (702)
T ss_pred CceEEEEECCHHHHHHHHHH
Confidence 236899999 8899888764
No 329
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=86.93 E-value=0.25 Score=36.23 Aligned_cols=63 Identities=17% Similarity=0.338 Sum_probs=46.8
Q ss_pred hhhHhh-hcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccccccccc
Q 035738 37 IFEIID-KAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVP 107 (333)
Q Consensus 37 lfd~L~-~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~~ 107 (333)
+||.|. ..+ |+....-|.-.+++ +....+..++.|+..|++... + ++....|.+|+.+..|+.
T Consensus 20 i~dIL~~~~~--~~~~~Tri~y~aNl----ny~~~~~yi~~L~~~Gli~~~-~-~~~~~~y~lT~KG~~fle 83 (95)
T COG3432 20 IFDILKAISE--GGIGITRIIYGANL----NYKRAQKYIEMLVEKGLIIKQ-D-NGRRKVYELTEKGKRFLE 83 (95)
T ss_pred HHHHHHHhcC--CCCCceeeeeecCc----CHHHHHHHHHHHHhCCCEEec-c-CCccceEEEChhHHHHHH
Confidence 355555 222 58888899999999 999999999999999966664 1 112336999998876653
No 330
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=86.73 E-value=0.9 Score=43.58 Aligned_cols=77 Identities=16% Similarity=0.179 Sum_probs=51.2
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CCe--EEEccCChhHHHHHHHHHHHhCCCCc
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PCM--WILHDWNDEHCLKLLKNCYKSIPEDG 261 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~gv--~vLh~~~~~~~~~lL~~~~~~L~pgG 261 (333)
.+....++||=||||.++.++++.. .+++++++ |+.++.|+.+ .|+ .-+|. . ++.+++..+..-.-+++
T Consensus 381 l~~~k~llDv~CGTG~iglala~~~--~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~-g--qaE~~~~sl~~~~~~~~ 455 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARGV--KRVIGVEISPDAVEDAEKNAQINGISNATFIV-G--QAEDLFPSLLTPCCDSE 455 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhccc--cceeeeecChhhcchhhhcchhcCccceeeee-c--chhhccchhcccCCCCC
Confidence 6777999999999999999998876 45888888 8888888876 344 22221 1 22344544433332344
Q ss_pred E-EEEEeee
Q 035738 262 K-VIAVELM 269 (333)
Q Consensus 262 ~-l~i~e~~ 269 (333)
. +.|+|+-
T Consensus 456 ~~v~iiDPp 464 (534)
T KOG2187|consen 456 TLVAIIDPP 464 (534)
T ss_pred ceEEEECCC
Confidence 4 7777763
No 331
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=86.62 E-value=0.68 Score=39.78 Aligned_cols=44 Identities=23% Similarity=0.378 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHH
Q 035738 24 VLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLL 77 (333)
Q Consensus 24 ~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L 77 (333)
.+-.+|+.|.+.|-||. +. ..++.|||+.+|+ .+..+...||-.
T Consensus 159 rQ~~vL~~A~~~GYFd~-PR-----~~~l~dLA~~lGI----Skst~~ehLRrA 202 (215)
T COG3413 159 RQLEVLRLAYKMGYFDY-PR-----RVSLKDLAKELGI----SKSTLSEHLRRA 202 (215)
T ss_pred HHHHHHHHHHHcCCCCC-Cc-----cCCHHHHHHHhCC----CHHHHHHHHHHH
Confidence 45679999999999998 54 6899999999999 676666666543
No 332
>PHA01634 hypothetical protein
Probab=86.33 E-value=1.5 Score=34.13 Aligned_cols=39 Identities=8% Similarity=0.050 Sum_probs=28.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHV 229 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a 229 (333)
...+|+|||++.|..+..++-+... +++.++. |...+..
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK-~Vva~E~~~kl~k~~ 67 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGAS-FVVQYEKEEKLRKKW 67 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCcc-EEEEeccCHHHHHHH
Confidence 4679999999999999998876543 4555655 4444433
No 333
>PF01358 PARP_regulatory: Poly A polymerase regulatory subunit; InterPro: IPR000176 This family contains viral proteins that are bifunctional, acting as both an mRNA cap-specific RNA 2'-O-methyltransferase, which methylates the ribose 2' OH group of the first transcribed nucleotide, thereby producing a 2'-o-methylpurine cap and a poly(A) polymerase processivity factor which binds to Poly(A) but has no catalytic activity. The structure of this protein is known [].; GO: 0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity, 0006370 mRNA capping, 0006397 mRNA processing; PDB: 4DCG_A 1B42_A 3ERC_A 1AV6_A 2VP3_A 1JTF_A 1JTE_A 1VP3_A 3ER9_A 1P39_A ....
Probab=86.32 E-value=2.2 Score=37.96 Aligned_cols=82 Identities=10% Similarity=0.137 Sum_probs=48.8
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCe----EEEeechhHhhhCCCCCCeEEEccCChhHHHHHHHHHHHhCCCCcEE
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIK----GINFDLPHVIEHVPPHPCMWILHDWNDEHCLKLLKNCYKSIPEDGKV 263 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~----~~~~D~~~~~~~a~~~~gv~vLh~~~~~~~~~lL~~~~~~L~pgG~l 263 (333)
.++...||=+|.+.|.+...|.+.||+.+ .+.+|-.......++.+.|.+...+-+++ .+++.++...+ ..|
T Consensus 56 ~~~~~~VVYiGsApG~Hi~~L~~lf~~~~~~i~wvLiDp~~f~~~l~~l~~v~l~~~fftee---~~~~~~~~~~~-~il 131 (294)
T PF01358_consen 56 LDGPVTVVYIGSAPGTHIPFLFDLFPDLKVPIKWVLIDPRPFCISLEELSNVTLIQRFFTEE---YARRLRDKLNL-KIL 131 (294)
T ss_dssp STT-EEEEEES-SS-HHHHHHHHHHHHTT--EEEEEEESS---GGGTT-TTEEEEES---HH---HHHHHHHHHTT-EEE
T ss_pred CCCceEEEEecCCCcchHHHHHHHHHhcCCceEEEEECCcchhhhhcccCcEEeehhhCCHH---HHHHHHhhcCC-CeE
Confidence 34568999999999999999999998855 89999855555556556676666554443 44555566666 778
Q ss_pred EEEeeecCCC
Q 035738 264 IAVELMLPEV 273 (333)
Q Consensus 264 ~i~e~~~~~~ 273 (333)
+|.|....++
T Consensus 132 lISDIRS~~~ 141 (294)
T PF01358_consen 132 LISDIRSGDP 141 (294)
T ss_dssp EEE-------
T ss_pred EEEecccCCC
Confidence 8888755543
No 334
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=86.19 E-value=1.2 Score=32.68 Aligned_cols=47 Identities=23% Similarity=0.240 Sum_probs=41.9
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
..+.|...|... ||-.+.-+|..+++ +...+...++-|..+|++++.
T Consensus 8 l~~~IL~hl~~~---~~Dy~k~ia~~l~~----~~~~v~~~l~~Le~~GLler~ 54 (92)
T PF10007_consen 8 LDLKILQHLKKA---GPDYAKSIARRLKI----PLEEVREALEKLEEMGLLERV 54 (92)
T ss_pred hHHHHHHHHHHH---CCCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence 356678888887 47899999999999 999999999999999999998
No 335
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=86.01 E-value=0.56 Score=45.65 Aligned_cols=68 Identities=16% Similarity=0.239 Sum_probs=54.9
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccccccCCC
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNKD 110 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~~~~~ 110 (333)
.+..++..|... ++.|..+||+.+|+ ++..+.+.++.|.+.|++.+... ....|.+|+.+..++....
T Consensus 7 ~e~~vL~~L~~~---~~~s~~eLA~~l~l----~~~tVt~~i~~Le~kGlV~~~~~---~~~~i~LTeeG~~~~~~g~ 74 (489)
T PRK04172 7 NEKKVLKALKEL---KEATLEELAEKLGL----PPEAVMRAAEWLEEKGLVKVEER---VEEVYVLTEEGKKYAEEGL 74 (489)
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEEEee---eEEEEEECHHHHHHHHhcC
Confidence 455667777765 48999999999999 99999999999999999998621 2456899999987766543
No 336
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=85.90 E-value=1.1 Score=36.00 Aligned_cols=48 Identities=17% Similarity=0.315 Sum_probs=43.0
Q ss_pred HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
..+..|.+.|.+. ++.+..+||+++|+ ++..+.+-++-|...|++...
T Consensus 8 ~~D~~IL~~L~~d---~r~~~~eia~~lgl----S~~~v~~Ri~~L~~~GiI~~~ 55 (154)
T COG1522 8 DIDRRILRLLQED---ARISNAELAERVGL----SPSTVLRRIKRLEEEGVIKGY 55 (154)
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCceeeE
Confidence 3566788899986 58999999999999 999999999999999999976
No 337
>PRK10870 transcriptional repressor MprA; Provisional
Probab=85.89 E-value=0.86 Score=37.84 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=38.0
Q ss_pred ChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738 36 GIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 36 glfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
.++..|...+ ++++|..|||+.+++ +...+.+++.-|...|+|.+.+
T Consensus 59 ~iL~~L~~~~-~~~it~~eLa~~l~l----~~~tvsr~v~rLe~kGlV~R~~ 105 (176)
T PRK10870 59 MALITLESQE-NHSIQPSELSCALGS----SRTNATRIADELEKRGWIERRE 105 (176)
T ss_pred HHHHHHhcCC-CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecC
Confidence 3445554321 247899999999999 9999999999999999999973
No 338
>PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks. This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms.
Probab=85.79 E-value=1.1 Score=31.41 Aligned_cols=49 Identities=16% Similarity=0.192 Sum_probs=41.7
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
.+..+++.++.+.. .+.+..+|+..+|. +++.+-..++.|...|++.+.
T Consensus 3 ~~~~~Le~I~rsR~-~Gi~q~~L~~~~~~----D~r~i~~~~k~L~~~gLI~k~ 51 (75)
T PF04182_consen 3 IQYCLLERIARSRY-NGITQSDLSKLLGI----DPRSIFYRLKKLEKKGLIVKQ 51 (75)
T ss_pred hHHHHHHHHHhcCC-CCEehhHHHHHhCC----CchHHHHHHHHHHHCCCEEEE
Confidence 45567777886544 37888999999999 999999999999999999986
No 339
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=85.75 E-value=0.89 Score=40.57 Aligned_cols=82 Identities=22% Similarity=0.283 Sum_probs=57.9
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCe-EEEeec-hhHhhhCCCC-C---------Ce--------------------
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIK-GINFDL-PHVIEHVPPH-P---------CM-------------------- 235 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~-~---------gv-------------------- 235 (333)
..++.+++-||+|-|.+.+...++ +.+. +..+|+ ..+++..+++ | .|
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 457899999999999999998887 6654 677788 5677766654 1 12
Q ss_pred EEEccCChhH--H-----HHHHHHHHHhCCCCcEEEEEeeec
Q 035738 236 WILHDWNDEH--C-----LKLLKNCYKSIPEDGKVIAVELML 270 (333)
Q Consensus 236 ~vLh~~~~~~--~-----~~lL~~~~~~L~pgG~l~i~e~~~ 270 (333)
-++-+-+|+. + ....+-+.++||+||.+++.....
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~ 239 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECM 239 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEeccee
Confidence 3333444332 2 245667889999999999887644
No 340
>PRK05638 threonine synthase; Validated
Probab=85.71 E-value=0.88 Score=43.71 Aligned_cols=63 Identities=16% Similarity=0.241 Sum_probs=48.5
Q ss_pred HhChhhHhhhcCCCCCCCHHHHHHHhC--CCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccccccc
Q 035738 34 ELGIFEIIDKAGPGAKLSASDIAAQLT--TKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYY 105 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~ela~~~g--~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l 105 (333)
++.|+..|.+ ++.+..||++.++ + .+..+.+.|+.|...|+++...+.| ....|++|+.+..+
T Consensus 373 r~~IL~~L~~----~~~~~~el~~~l~~~~----s~~~v~~hL~~Le~~GLV~~~~~~g-~~~~Y~Lt~~g~~~ 437 (442)
T PRK05638 373 KLEILKILSE----REMYGYEIWKALGKPL----KYQAVYQHIKELEELGLIEEAYRKG-RRVYYKLTEKGRRL 437 (442)
T ss_pred HHHHHHHHhh----CCccHHHHHHHHcccC----CcchHHHHHHHHHHCCCEEEeecCC-CcEEEEECcHHHHH
Confidence 5567777776 4899999999998 7 8889999999999999998642223 23458888776543
No 341
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=85.69 E-value=0.62 Score=44.76 Aligned_cols=71 Identities=14% Similarity=0.174 Sum_probs=58.4
Q ss_pred HHHHhChhhHhhhcCCCCC-CCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccccccCC
Q 035738 31 AVYELGIFEIIDKAGPGAK-LSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNK 109 (333)
Q Consensus 31 ~a~~lglfd~L~~~~~~g~-~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~~~~ 109 (333)
++.+..|+..|... ++ .+.++||+.+|+ ++..+.+.+..|.+.|+++.... ....|.+|+.+..++.++
T Consensus 2 ~~~e~~iL~~l~~~---~~~~~~~~la~~~g~----~~~~v~~~~~~L~~kg~v~~~~~---~~~~~~LT~eG~~~l~~G 71 (492)
T PLN02853 2 AMAEEALLGALSNN---EEISDSGQFAASHGL----DHNEVVGVIKSLHGFRYVDAQDI---KRETWVLTEEGKKYAAEG 71 (492)
T ss_pred chHHHHHHHHHHhc---CCCCCHHHHHHHcCC----CHHHHHHHHHHHHhCCCEEEEEE---EEEEEEECHHHHHHHHcC
Confidence 34577788888875 34 799999999999 99999999999999999987642 467899999998777765
Q ss_pred CC
Q 035738 110 DG 111 (333)
Q Consensus 110 ~~ 111 (333)
.+
T Consensus 72 ~P 73 (492)
T PLN02853 72 SP 73 (492)
T ss_pred CH
Confidence 43
No 342
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=85.64 E-value=0.63 Score=38.07 Aligned_cols=39 Identities=18% Similarity=0.340 Sum_probs=32.2
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738 192 KQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH 232 (333)
Q Consensus 192 ~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~ 232 (333)
..|+|+-||.|..+..+++.+. +++.+|+ |..++.++.+
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hN 40 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHN 40 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHH
T ss_pred CEEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHH
Confidence 3699999999999999999975 4888999 7888888765
No 343
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=85.53 E-value=5.4 Score=37.41 Aligned_cols=42 Identities=17% Similarity=0.105 Sum_probs=31.2
Q ss_pred CCCCCeEEEEcCCc-cHHHHHHHHHCCCCeEEEeec-hhHhhhC
Q 035738 188 FDNIKQLVDVGGGI-GVTLQAITTKYPYIKGINFDL-PHVIEHV 229 (333)
Q Consensus 188 ~~~~~~vlDVGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a 229 (333)
.....+||.+|||. |..+..++++....+++++|. +...+.+
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~ 225 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMA 225 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH
Confidence 55678999999988 888889999886545777765 5554443
No 344
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=85.25 E-value=0.86 Score=38.11 Aligned_cols=42 Identities=10% Similarity=0.056 Sum_probs=31.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH 232 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~ 232 (333)
...++||+=||||.++.+.+.+.-. +++.+|. +..+...+++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~-~v~fVE~~~~a~~~i~~N 84 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAK-SVVFVEKNRKAIKIIKKN 84 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-S-EEEEEES-HHHHHHHHHH
T ss_pred CCCeEEEcCCccCccHHHHHhcCCC-eEEEEECCHHHHHHHHHH
Confidence 5689999999999999998887743 6888898 6777666543
No 345
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.80 E-value=3.1 Score=33.27 Aligned_cols=91 Identities=20% Similarity=0.261 Sum_probs=57.1
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---C-----------Ce---------
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---P-----------CM--------- 235 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~-----------gv--------- 235 (333)
.+++.++ -++..+.+|+|.|.|......++.. -...+++++ |..+..++-. . ++
T Consensus 63 nVLSll~-~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~ 140 (199)
T KOG4058|consen 63 NVLSLLR-GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYR 140 (199)
T ss_pred HHHHHcc-CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccc
Confidence 4455554 4556899999999999888777655 345678888 7666544311 1 11
Q ss_pred EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 035738 236 WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPE 272 (333)
Q Consensus 236 ~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~ 272 (333)
++.-.-.+.-...+-.|++.-|+.+.+++-+-+-.|+
T Consensus 141 ~vviFgaes~m~dLe~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 141 NVVIFGAESVMPDLEDKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred eEEEeehHHHHhhhHHHHHhhCcCCCeEEEEecCCCc
Confidence 2222222233334566777778889999888875554
No 346
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=84.66 E-value=1.4 Score=29.74 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=31.1
Q ss_pred CCC-CHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 48 AKL-SASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 48 g~~-t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
..+ |..+||+.+|+ +..-+++-|+.|.+.|++...
T Consensus 22 ~~lps~~~la~~~~v----sr~tvr~al~~L~~~g~i~~~ 57 (64)
T PF00392_consen 22 DRLPSERELAERYGV----SRTTVREALRRLEAEGLIERR 57 (64)
T ss_dssp SBE--HHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred CEeCCHHHHHHHhcc----CCcHHHHHHHHHHHCCcEEEE
Confidence 477 99999999999 999999999999999999987
No 347
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=84.46 E-value=1.2 Score=30.95 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=32.5
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 49 KLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 49 ~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
+.|-++||..+|+ ....+.+.|+.|...|++...
T Consensus 28 ~lt~~~iA~~~g~----sr~tv~r~l~~l~~~g~I~~~ 61 (76)
T PF13545_consen 28 PLTQEEIADMLGV----SRETVSRILKRLKDEGIIEVK 61 (76)
T ss_dssp ESSHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEc
Confidence 7899999999999 999999999999999999975
No 348
>COG1733 Predicted transcriptional regulators [Transcription]
Probab=84.40 E-value=2.1 Score=33.06 Aligned_cols=79 Identities=16% Similarity=0.223 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhC-CCCCCCcccHHHHHHHHhcccceeeecc-
Q 035738 11 QSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLT-TKNKDAPMMLDRILRLLASYSVVECSLD- 88 (333)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g-~~~~~~~~~l~~lL~~L~~~g~l~~~~~- 88 (333)
-+++...+++.+-|..-+++...+ |+.-..||-..++ + .+..|.+-|+.|...|++.+..-
T Consensus 11 c~~~~~l~~ig~kW~~lIl~~L~~-------------g~~RF~eL~r~i~~I----s~k~Ls~~Lk~Le~~Glv~R~~~~ 73 (120)
T COG1733 11 CPVEEALEVIGGKWTLLILRDLFD-------------GPKRFNELRRSIGGI----SPKMLSRRLKELEEDGLVERVVYP 73 (120)
T ss_pred CCHHHHHHHHcCccHHHHHHHHhc-------------CCCcHHHHHHHcccc----CHHHHHHHHHHHHHCCCEEeeecC
Confidence 356777888888888777665433 3788899999998 8 89999999999999999999741
Q ss_pred CCCccccccccccccccc
Q 035738 89 ASGARRLYSLNSVSKYYV 106 (333)
Q Consensus 89 ~~~~~~~y~~t~~~~~l~ 106 (333)
.-+..-.|++|+.+..+.
T Consensus 74 ~~PprveY~LT~~G~~L~ 91 (120)
T COG1733 74 EEPPRVEYRLTEKGRDLL 91 (120)
T ss_pred CCCceeEEEEhhhHHHHH
Confidence 112244588887775544
No 349
>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress. Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=84.22 E-value=1.7 Score=30.64 Aligned_cols=48 Identities=15% Similarity=0.139 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccc
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVS 102 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~ 102 (333)
.|+...+||+.++. ++.-++--|..|.++|||+..+ + ..+.|..|..+
T Consensus 22 ~PVgSk~ia~~l~~----s~aTIRN~M~~Le~lGlve~~p--~-~s~GriPT~~a 69 (78)
T PF03444_consen 22 EPVGSKTIAEELGR----SPATIRNEMADLEELGLVESQP--H-PSGGRIPTDKA 69 (78)
T ss_pred CCcCHHHHHHHHCC----ChHHHHHHHHHHHHCCCccCCC--C-CCCCCCcCHHH
Confidence 59999999999999 9999999999999999998531 1 23556665544
No 350
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=84.04 E-value=4.2 Score=39.10 Aligned_cols=79 Identities=19% Similarity=0.295 Sum_probs=48.2
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEe---echhHhhhCCCC--CCe---------------EEEcc------C
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINF---DLPHVIEHVPPH--PCM---------------WILHD------W 241 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~---D~~~~~~~a~~~--~gv---------------~vLh~------~ 241 (333)
.+..+.|+|...|.|.++.+|.+. | +-+..+ +-+..+...-.+ -|+ .+||- +
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~-~-VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~ 440 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDD-P-VWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLY 440 (506)
T ss_pred ccceeeeeeecccccHHHHHhccC-C-ceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhh
Confidence 567889999999999999999753 2 222111 112222211111 111 33332 2
Q ss_pred Ch-hHHHHHHHHHHHhCCCCcEEEEEee
Q 035738 242 ND-EHCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 242 ~~-~~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
.+ -+...||-++-|.|+|||.++|-|.
T Consensus 441 ~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 441 KDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred cccccHHHHHHHhHhhcCCCceEEEecc
Confidence 21 1235789999999999999999876
No 351
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=83.90 E-value=1.1 Score=38.09 Aligned_cols=44 Identities=25% Similarity=0.428 Sum_probs=36.5
Q ss_pred hhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 37 IFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 37 lfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
|.+.|.. ++.+.|++|+|+++|+ +..-.+|.|.+|++.|++..+
T Consensus 163 i~~~~~~--~~~~~Taeela~~~gi----SRvTaRRYLeyl~~~~~l~a~ 206 (224)
T COG4565 163 VREALKE--PDQELTAEELAQALGI----SRVTARRYLEYLVSNGILEAE 206 (224)
T ss_pred HHHHHhC--cCCccCHHHHHHHhCc----cHHHHHHHHHHHHhcCeeeEE
Confidence 3444542 2359999999999999 899999999999999999865
No 352
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.85 E-value=4.6 Score=36.69 Aligned_cols=84 Identities=15% Similarity=0.150 Sum_probs=59.6
Q ss_pred CCCCCeEEEEcCC-ccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCCCCe----EEEccCChhHH---------------
Q 035738 188 FDNIKQLVDVGGG-IGVTLQAITTKYPYIKGINFDL-PHVIEHVPPHPCM----WILHDWNDEHC--------------- 246 (333)
Q Consensus 188 ~~~~~~vlDVGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~gv----~vLh~~~~~~~--------------- 246 (333)
+....+||-+|+| .|..+...++++.-.++++.|+ +.-++.|++. |. ++-|.-+.++.
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~-Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~ 245 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKF-GATVTDPSSHKSSPQELAELVEKALGKKQPDV 245 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHh-CCeEEeeccccccHHHHHHHHHhhccccCCCe
Confidence 6678999999999 5777778889999999999999 8889998874 21 11111111111
Q ss_pred -------HHHHHHHHHhCCCCcEEEEEeeecCC
Q 035738 247 -------LKLLKNCYKSIPEDGKVIAVELMLPE 272 (333)
Q Consensus 247 -------~~lL~~~~~~L~pgG~l~i~e~~~~~ 272 (333)
...++.+..++++||.+++.....+.
T Consensus 246 ~~dCsG~~~~~~aai~a~r~gGt~vlvg~g~~~ 278 (354)
T KOG0024|consen 246 TFDCSGAEVTIRAAIKATRSGGTVVLVGMGAEE 278 (354)
T ss_pred EEEccCchHHHHHHHHHhccCCEEEEeccCCCc
Confidence 23455566699999998888875443
No 353
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=83.56 E-value=1.3 Score=42.09 Aligned_cols=43 Identities=19% Similarity=0.162 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccc
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLN 99 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t 99 (333)
.|.|.++|++++++ +++.++++|+.|...|++.+. +++.|.+.
T Consensus 309 ~~~t~~~La~~l~~----~~~~v~~iL~~L~~agLI~~~-----~~g~~~l~ 351 (412)
T PRK04214 309 KALDVDEIRRLEPM----GYDELGELLCELARIGLLRRG-----ERGQWVLA 351 (412)
T ss_pred CCCCHHHHHHHhCC----CHHHHHHHHHHHHhCCCeEec-----CCCceEec
Confidence 58999999999999 999999999999999999975 23456544
No 354
>PHA03108 poly(A) polymerase small subunit; Provisional
Probab=83.52 E-value=6.1 Score=35.00 Aligned_cols=79 Identities=13% Similarity=0.125 Sum_probs=60.0
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCC----CeEEEeechhHhhhCCCCCCeEEEccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 035738 191 IKQLVDVGGGIGVTLQAITTKYPY----IKGINFDLPHVIEHVPPHPCMWILHDWNDEHCLKLLKNCYKSIPEDGKVIAV 266 (333)
Q Consensus 191 ~~~vlDVGgG~G~~~~~l~~~~p~----~~~~~~D~~~~~~~a~~~~gv~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~ 266 (333)
+..||=+|.+.|.+...|.+.|++ ++.+.+|-.......+..++|.+...+-+++ -+++.++.+.+.-.++|.
T Consensus 61 g~~VVYiGSApG~HI~~L~~lf~~lg~~ikw~LiDp~~h~~~Le~l~nV~Li~~f~de~---~i~~~r~~~~~~~illIS 137 (300)
T PHA03108 61 GSTIVYIGSAPGTHIRYLRDHFYSLGVVIKWMLIDGRKHDPILNGLRDVTLVTRFVDEA---YLRRLKKQLHPSKIILIS 137 (300)
T ss_pred CceEEEecCCCCccHHHHHHHHHhcCCCeEEEEECCCcccHhhcCCCcEEeeHhhcCHH---HHHHHHHhccCCCEEEEE
Confidence 349999999999999999998887 6889999744444445456777777777775 455666777788888999
Q ss_pred eeecCC
Q 035738 267 ELMLPE 272 (333)
Q Consensus 267 e~~~~~ 272 (333)
|....+
T Consensus 138 DIRS~~ 143 (300)
T PHA03108 138 DIRSKR 143 (300)
T ss_pred eecccC
Confidence 886644
No 355
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=83.37 E-value=1.5 Score=38.59 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=40.5
Q ss_pred hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
..|.+.|.+. +..++.|||+.+|+ .+.-++|-|+.|.+.|++.+.
T Consensus 8 ~~Il~~l~~~---~~~~~~ela~~l~v----S~~TirRdL~~Le~~g~i~r~ 52 (251)
T PRK13509 8 QILLELLAQL---GFVTVEKVIERLGI----SPATARRDINKLDESGKLKKV 52 (251)
T ss_pred HHHHHHHHHc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 3477888876 59999999999999 999999999999999999986
No 356
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=83.28 E-value=0.4 Score=36.21 Aligned_cols=75 Identities=15% Similarity=0.204 Sum_probs=37.1
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC-CCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHh--CCCCe
Q 035738 240 DWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPE-VPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATG--AGFSG 316 (333)
Q Consensus 240 ~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~-~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~--aGf~~ 316 (333)
+|.|+-...+++++++.|+|||.+++ |+-.-. -... ........-.+ ..-...++++.++|.+ .||..
T Consensus 17 n~GD~Gl~~~f~~~~~~L~pGG~lil-EpQ~w~sY~~~---~~~~~~~~~n~-----~~i~lrP~~F~~~L~~~evGF~~ 87 (110)
T PF06859_consen 17 NWGDEGLKRFFRRIYSLLRPGGILIL-EPQPWKSYKKA---KRLSEEIRENY-----KSIKLRPDQFEDYLLEPEVGFSS 87 (110)
T ss_dssp HHHHHHHHHHHHHHHHHEEEEEEEEE-E---HHHHHTT---TTS-HHHHHHH-----HH----GGGHHHHHTSTTT---E
T ss_pred cCcCHHHHHHHHHHHHhhCCCCEEEE-eCCCcHHHHHH---hhhhHHHHhHH-----hceEEChHHHHHHHHhcccceEE
Confidence 56788889999999999999988654 552110 0000 00000111111 1112346678888887 69998
Q ss_pred eEEeecC
Q 035738 317 ISCERAI 323 (333)
Q Consensus 317 ~~~~~~~ 323 (333)
++.....
T Consensus 88 ~e~~~~~ 94 (110)
T PF06859_consen 88 VEELGVP 94 (110)
T ss_dssp EEEE---
T ss_pred EEEcccC
Confidence 8765543
No 357
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=83.00 E-value=1.6 Score=33.54 Aligned_cols=36 Identities=8% Similarity=0.107 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
.+.|++|||+.+.+ .++.++.+|+.|...|+++..+
T Consensus 18 ~~vtl~elA~~l~c----S~Rn~r~lLkkm~~~gWi~W~p 53 (115)
T PF12793_consen 18 VEVTLDELAELLFC----SRRNARTLLKKMQEEGWITWQP 53 (115)
T ss_pred cceeHHHHHHHhCC----CHHHHHHHHHHHHHCCCeeeeC
Confidence 47899999999999 9999999999999999999974
No 358
>COG1846 MarR Transcriptional regulators [Transcription]
Probab=82.75 E-value=1.5 Score=33.33 Aligned_cols=51 Identities=16% Similarity=0.239 Sum_probs=41.5
Q ss_pred HHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738 30 QAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 30 ~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
....+..++..|...+ +.+..+||+.+++ ++..+.++++-|...|++.+..
T Consensus 20 lt~~q~~~L~~l~~~~---~~~~~~la~~l~i----~~~~vt~~l~~Le~~glv~r~~ 70 (126)
T COG1846 20 LTPPQYQVLLALYEAG---GITVKELAERLGL----DRSTVTRLLKRLEDKGLIERLR 70 (126)
T ss_pred CCHHHHHHHHHHHHhC---CCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeecC
Confidence 3455666777777753 4444999999999 9999999999999999999974
No 359
>TIGR00498 lexA SOS regulatory protein LexA. LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.
Probab=82.72 E-value=1.6 Score=36.97 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=37.6
Q ss_pred HhChhhHhhh----cCCCCCCCHHHHHHHhCCCCCCC-cccHHHHHHHHhcccceeee
Q 035738 34 ELGIFEIIDK----AGPGAKLSASDIAAQLTTKNKDA-PMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 34 ~lglfd~L~~----~~~~g~~t~~ela~~~g~~~~~~-~~~l~~lL~~L~~~g~l~~~ 86 (333)
+..|++.|.+ .+ -+.|..|||+.+|+ + +.-+.+.|+.|...|++.+.
T Consensus 8 q~~iL~~l~~~~~~~~--~~~~~~ela~~~~~----~s~~tv~~~l~~L~~~g~i~~~ 59 (199)
T TIGR00498 8 QQEVLDLIRAHIESTG--YPPSIREIARAVGL----RSPSAAEEHLKALERKGYIERD 59 (199)
T ss_pred HHHHHHHHHHHHHhcC--CCCcHHHHHHHhCC----CChHHHHHHHHHHHHCCCEecC
Confidence 4445555553 12 36889999999999 7 89999999999999999986
No 360
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=82.65 E-value=0.88 Score=42.28 Aligned_cols=52 Identities=17% Similarity=0.270 Sum_probs=38.7
Q ss_pred hHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738 177 VMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH 232 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~ 232 (333)
+...+++.++ ..+. +|||+=||.|.++..+++... +++++|. +.+++.|+++
T Consensus 185 l~~~~~~~l~-~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~N 237 (352)
T PF05958_consen 185 LYEQALEWLD-LSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDAREN 237 (352)
T ss_dssp HHHHHHHHCT-T-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHH
T ss_pred HHHHHHHHhh-cCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHH
Confidence 3445555554 4333 799999999999999998875 5888898 8888888764
No 361
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=82.43 E-value=1.1 Score=39.85 Aligned_cols=77 Identities=16% Similarity=0.141 Sum_probs=43.4
Q ss_pred CCCeEEEEcCCcc-HHHHHHHHHC-CCCeEEEeec-hhHhhhCCCC----CCe---------------------E--EEc
Q 035738 190 NIKQLVDVGGGIG-VTLQAITTKY-PYIKGINFDL-PHVIEHVPPH----PCM---------------------W--ILH 239 (333)
Q Consensus 190 ~~~~vlDVGgG~G-~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~----~gv---------------------~--vLh 239 (333)
.+.+|+=||||.= ..+..+++.+ ++..++++|+ |.+++.+++. .++ . ++-
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 4679999999954 5666666654 6788999999 8888777542 111 0 111
Q ss_pred -cC--ChhHHHHHHHHHHHhCCCCcEEEEE
Q 035738 240 -DW--NDEHCLKLLKNCYKSIPEDGKVIAV 266 (333)
Q Consensus 240 -~~--~~~~~~~lL~~~~~~L~pgG~l~i~ 266 (333)
-. +.++-.++|.++.+.|+||+++++-
T Consensus 200 alVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 200 ALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 11 2223358999999999999987776
No 362
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=82.37 E-value=1.8 Score=26.61 Aligned_cols=37 Identities=16% Similarity=0.310 Sum_probs=26.2
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHH
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRL 76 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~ 76 (333)
++..|.+.|... +..+..+||+.+|+ ++..+.+=++.
T Consensus 4 ~D~~Il~~Lq~d---~r~s~~~la~~lgl----S~~~v~~Ri~r 40 (42)
T PF13404_consen 4 LDRKILRLLQED---GRRSYAELAEELGL----SESTVRRRIRR 40 (42)
T ss_dssp HHHHHHHHHHH----TTS-HHHHHHHHTS-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHc---CCccHHHHHHHHCc----CHHHHHHHHHH
Confidence 456788888876 59999999999999 77666554443
No 363
>COG1510 Predicted transcriptional regulators [Transcription]
Probab=82.31 E-value=1.7 Score=35.53 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
.|+|++||+++||+ +...+..-|+-|...|++.+.-
T Consensus 40 ~Pmtl~Ei~E~lg~----Sks~vS~~lkkL~~~~lV~~~~ 75 (177)
T COG1510 40 KPLTLDEIAEALGM----SKSNVSMGLKKLQDWNLVKKVF 75 (177)
T ss_pred CCccHHHHHHHHCC----CcchHHHHHHHHHhcchHHhhh
Confidence 69999999999999 8889999999999999999863
No 364
>PF13730 HTH_36: Helix-turn-helix domain
Probab=82.29 E-value=1.3 Score=28.65 Aligned_cols=29 Identities=17% Similarity=0.294 Sum_probs=27.6
Q ss_pred CHHHHHHHhCCCCCCCcccHHHHHHHHhcccce
Q 035738 51 SASDIAAQLTTKNKDAPMMLDRILRLLASYSVV 83 (333)
Q Consensus 51 t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l 83 (333)
|.+.||+.+|+ ..+-+.+.++.|...|++
T Consensus 27 S~~~la~~~g~----s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 27 SQETLAKDLGV----SRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CHHHHHHHHCc----CHHHHHHHHHHHHHCcCC
Confidence 89999999999 999999999999999985
No 365
>PRK13777 transcriptional regulator Hpr; Provisional
Probab=81.86 E-value=1.9 Score=36.05 Aligned_cols=45 Identities=18% Similarity=-0.040 Sum_probs=38.7
Q ss_pred ChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738 36 GIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 36 glfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
.+...|... +++|..+||+.+++ +..-+.++++-|...|++.+..
T Consensus 49 ~iL~~L~~~---~~itq~eLa~~l~l----~~sTvtr~l~rLE~kGlI~R~~ 93 (185)
T PRK13777 49 HILWIAYHL---KGASISEIAKFGVM----HVSTAFNFSKKLEERGYLTFSK 93 (185)
T ss_pred HHHHHHHhC---CCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEecC
Confidence 456666665 48999999999999 8888999999999999999863
No 366
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=81.79 E-value=1.4 Score=32.89 Aligned_cols=51 Identities=14% Similarity=0.213 Sum_probs=39.3
Q ss_pred HHHhChhhHhhh-cCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 32 VYELGIFEIIDK-AGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 32 a~~lglfd~L~~-~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
...-.|++.|.. .....++++++|++++++ ++.-++..++.|...|++-..
T Consensus 47 ~~~~~Vl~~i~~~~~~~~Gv~v~~I~~~l~~----~~~~v~~al~~L~~eG~IYsT 98 (102)
T PF08784_consen 47 PLQDKVLNFIKQQPNSEEGVHVDEIAQQLGM----SENEVRKALDFLSNEGHIYST 98 (102)
T ss_dssp HHHHHHHHHHHC----TTTEEHHHHHHHSTS-----HHHHHHHHHHHHHTTSEEES
T ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHhCc----CHHHHHHHHHHHHhCCeEecc
Confidence 345566777766 222357999999999999 999999999999999999754
No 367
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=81.72 E-value=7.6 Score=36.15 Aligned_cols=83 Identities=11% Similarity=0.112 Sum_probs=57.7
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCC--CeEEEeec-hhHhhhCCCC------CC--------------------e---
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPY--IKGINFDL-PHVIEHVPPH------PC--------------------M--- 235 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~------~g--------------------v--- 235 (333)
..++.+|||.-.+.|.=+..+++.-++ ..++.+|. +.-++..+++ .+ .
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 667899999999999988888887765 55688898 5444433321 00 0
Q ss_pred ----------------EEEccCChhHH-------HHHHHHHHHhCCCCcEEEEEeeec
Q 035738 236 ----------------WILHDWNDEHC-------LKLLKNCYKSIPEDGKVIAVELML 270 (333)
Q Consensus 236 ----------------~vLh~~~~~~~-------~~lL~~~~~~L~pgG~l~i~e~~~ 270 (333)
.+...++..+. .+||..+.+.|||||.|+-..-..
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 33344444432 468999999999999987766543
No 368
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=81.26 E-value=3.7 Score=39.29 Aligned_cols=133 Identities=10% Similarity=0.086 Sum_probs=72.1
Q ss_pred HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCCC---Ce-EEEccCChhHHHHHHHH
Q 035738 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPHP---CM-WILHDWNDEHCLKLLKN 252 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~---gv-~vLh~~~~~~~~~lL~~ 252 (333)
.....+.+. ..+..+++|.=||.|.++..++++. .+++++++ +.+++.|+++. ++ ++-..-. .+.++..+
T Consensus 282 ~~~a~~~~~-~~~~~~vlDlYCGvG~f~l~lA~~~--~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~--~ae~~~~~ 356 (432)
T COG2265 282 YETALEWLE-LAGGERVLDLYCGVGTFGLPLAKRV--KKVHGVEISPEAVEAAQENAAANGIDNVEFIAG--DAEEFTPA 356 (432)
T ss_pred HHHHHHHHh-hcCCCEEEEeccCCChhhhhhcccC--CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeC--CHHHHhhh
Confidence 344445444 5567899999999999999999555 46888999 88998887652 22 3222212 22245444
Q ss_pred HHHhCCCCcEEEEEeeecCCCCCCccc-cccccch--hhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeecC
Q 035738 253 CYKSIPEDGKVIAVELMLPEVPNTSIE-SKSNSDS--DVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAI 323 (333)
Q Consensus 253 ~~~~L~pgG~l~i~e~~~~~~~~~~~~-~~~~~~~--d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 323 (333)
....-+|+ .+|+|+-.. ...+.. ....... -+.+.+| | .-|...=.+.|.+.|+++.++.+.+
T Consensus 357 ~~~~~~~d--~VvvDPPR~--G~~~~~lk~l~~~~p~~IvYVSC--N--P~TlaRDl~~L~~~gy~i~~v~~~D 422 (432)
T COG2265 357 WWEGYKPD--VVVVDPPRA--GADREVLKQLAKLKPKRIVYVSC--N--PATLARDLAILASTGYEIERVQPFD 422 (432)
T ss_pred ccccCCCC--EEEECCCCC--CCCHHHHHHHHhcCCCcEEEEeC--C--HHHHHHHHHHHHhCCeEEEEEEEec
Confidence 43222343 566676221 111000 0000000 0011111 1 1134444567788898888887765
No 369
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=81.24 E-value=2.8 Score=36.94 Aligned_cols=36 Identities=17% Similarity=0.310 Sum_probs=26.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCC--------CCeEEEeec-hhH
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYP--------YIKGINFDL-PHV 225 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p--------~~~~~~~D~-~~~ 225 (333)
.+.+|+|+|+|+|.++..+++... .++++.++. |..
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L 62 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYL 62 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCC
T ss_pred cCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHH
Confidence 457999999999999999887533 357888887 444
No 370
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=80.88 E-value=1.4 Score=42.51 Aligned_cols=71 Identities=13% Similarity=0.190 Sum_probs=57.6
Q ss_pred HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccccccCCCC
Q 035738 32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNKDG 111 (333)
Q Consensus 32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~~~~~~ 111 (333)
..+..|+..|.+.+ +..+.++||+.+|+ ++..+.+.+..|.+.|+++.... ....|.+|+.+..++.++.+
T Consensus 6 ~~e~~iL~~l~~~~--~~~~~~~la~~~~~----~~~~v~~~~~~L~~kg~v~~~~~---~~~~~~LT~eG~~~~~~G~P 76 (494)
T PTZ00326 6 LEENTILSKLESEN--EIVNSLALAESLNI----DHQKVVGAIKSLESANYITTEMK---KSNTWTLTEEGEDYLKNGSP 76 (494)
T ss_pred HHHHHHHHHHHhcC--CCCCHHHHHHHcCC----CHHHHHHHHHHHHhCCCEEEEEE---EEEEEEECHHHHHHHHcCCH
Confidence 45566777887621 47899999999999 99999999999999999988642 46789999999987777543
No 371
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=80.83 E-value=1.5 Score=30.75 Aligned_cols=35 Identities=14% Similarity=0.236 Sum_probs=23.5
Q ss_pred hhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHh
Q 035738 37 IFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLA 78 (333)
Q Consensus 37 lfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~ 78 (333)
++..|+++ .|.|+++||.++|. +..-++..|..+-
T Consensus 29 LLr~LA~G---~PVt~~~LA~a~g~----~~e~v~~~L~~~p 63 (77)
T PF12324_consen 29 LLRLLAKG---QPVTVEQLAAALGW----PVEEVRAALAAMP 63 (77)
T ss_dssp HHHHHTTT---S-B-HHHHHHHHT------HHHHHHHHHH-T
T ss_pred HHHHHHcC---CCcCHHHHHHHHCC----CHHHHHHHHHhCC
Confidence 78889985 69999999999999 6666666555543
No 372
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=80.07 E-value=1.5 Score=27.78 Aligned_cols=41 Identities=15% Similarity=0.191 Sum_probs=23.6
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccc
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSV 82 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~ 82 (333)
.++.+...+.+ +.|..+||+.+|+ ++.-+.+|++.-...|+
T Consensus 6 ~R~~ii~l~~~-----G~s~~~ia~~lgv----s~~Tv~~w~kr~~~~G~ 46 (50)
T PF13384_consen 6 RRAQIIRLLRE-----GWSIREIAKRLGV----SRSTVYRWIKRYREEGL 46 (50)
T ss_dssp ----HHHHHHH-----T--HHHHHHHHTS-----HHHHHHHHT-------
T ss_pred HHHHHHHHHHC-----CCCHHHHHHHHCc----CHHHHHHHHHHcccccc
Confidence 34556666666 6899999999999 99999999987666553
No 373
>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle. Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B.
Probab=79.80 E-value=0.58 Score=32.50 Aligned_cols=37 Identities=24% Similarity=0.358 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHh---CCCCCCCcccHHHHHHHHhcccceeee
Q 035738 48 AKLSASDIAAQL---TTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 48 g~~t~~ela~~~---g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
+..++.++|+.+ +.|+ ..+.+..++++|.++|++++.
T Consensus 23 ~~i~l~~ia~~l~~~~~k~--~~RRlYDI~NVLealgli~K~ 62 (71)
T PF02319_consen 23 KSISLNEIADKLISENVKT--QRRRLYDIINVLEALGLIEKQ 62 (71)
T ss_dssp TEEEHHHHHHHCHHHCCHH--HCHHHHHHHHHHHHCTSEEEE
T ss_pred CcccHHHHHHHHccccccc--ccchhhHHHHHHHHhCceeec
Confidence 589999999999 7632 678899999999999999985
No 374
>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional
Probab=79.78 E-value=2.6 Score=38.60 Aligned_cols=56 Identities=11% Similarity=0.199 Sum_probs=43.4
Q ss_pred hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccc-eeeeccCCCccccccccccc
Q 035738 35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSV-VECSLDASGARRLYSLNSVS 102 (333)
Q Consensus 35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~-l~~~~~~~~~~~~y~~t~~~ 102 (333)
..|.+.|.+. .+.+.++||+++|+ +...+.+.++.|...|+ +... .+..|.+.+..
T Consensus 7 ~~il~~L~~~---~~~s~~~LA~~lgv----sr~tV~~~l~~L~~~G~~i~~~-----~~~Gy~L~~~~ 63 (319)
T PRK11886 7 LQLLSLLADG---DFHSGEQLGEELGI----SRAAIWKHIQTLEEWGLDIFSV-----KGKGYRLAEPL 63 (319)
T ss_pred HHHHHHHHcC---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCceEEe-----cCCeEEecCcc
Confidence 4566777764 47999999999999 99999999999999999 5443 23467765443
No 375
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=79.63 E-value=5.4 Score=40.45 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=25.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHC-------C-----CCeEEEeec
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKY-------P-----YIKGINFDL 222 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~-------p-----~~~~~~~D~ 222 (333)
..-+|+|+|=|+|......++.+ | .++++.++.
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~ 101 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEK 101 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEEC
Confidence 44799999999999777766544 4 467888885
No 376
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=79.63 E-value=2.1 Score=37.71 Aligned_cols=46 Identities=17% Similarity=0.288 Sum_probs=41.0
Q ss_pred HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
...|.+.|.+. +..++.|||+.+++ ++.=++|-|..|...|++.+.
T Consensus 7 ~~~Il~~l~~~---~~~~~~ela~~l~v----S~~TiRRdL~~Le~~g~l~r~ 52 (252)
T PRK10906 7 HDAIIELVKQQ---GYVSTEELVEHFSV----SPQTIRRDLNDLAEQNKILRH 52 (252)
T ss_pred HHHHHHHHHHc---CCEeHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 34567888876 58999999999999 999999999999999999987
No 377
>PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus.
Probab=79.61 E-value=3.9 Score=28.33 Aligned_cols=43 Identities=19% Similarity=0.170 Sum_probs=37.5
Q ss_pred ChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 36 GIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 36 glfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
.|...|+. +..|.++|-+.+|+ +..-+-..|.-|+..|++.+.
T Consensus 9 ~IL~~ls~----~c~TLeeL~ekTgi----~k~~LlV~LsrL~k~GiI~Rk 51 (72)
T PF05584_consen 9 KILIILSK----RCCTLEELEEKTGI----SKNTLLVYLSRLAKRGIIERK 51 (72)
T ss_pred HHHHHHHh----ccCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeee
Confidence 34556666 48999999999999 999999999999999999986
No 378
>PRK12423 LexA repressor; Provisional
Probab=79.50 E-value=2.3 Score=36.12 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=31.1
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 49 KLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 49 ~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
+.|..|||+++|++ .+..+++.|+.|...|+++..
T Consensus 25 ~Ps~~eia~~~g~~---s~~~v~~~l~~L~~~G~l~~~ 59 (202)
T PRK12423 25 PPSLAEIAQAFGFA---SRSVARKHVQALAEAGLIEVV 59 (202)
T ss_pred CCCHHHHHHHhCCC---ChHHHHHHHHHHHHCCCEEec
Confidence 56999999999952 677889999999999999986
No 379
>PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species. The region in question is approximately 150 amino acid residues long.
Probab=79.40 E-value=3.3 Score=32.89 Aligned_cols=46 Identities=9% Similarity=0.135 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccc
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLN 99 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t 99 (333)
|+.|.+|||-+.|+ ..+.+..-|.++.+-|-|.+..++| .=+|++.
T Consensus 5 Ga~T~eELA~~FGv----ttRkvaStLa~~ta~Grl~Rv~q~g--kfRy~iP 50 (155)
T PF07789_consen 5 GAKTAEELAGKFGV----TTRKVASTLAMVTATGRLIRVNQNG--KFRYCIP 50 (155)
T ss_pred CcccHHHHHHHhCc----chhhhHHHHHHHHhcceeEEecCCC--ceEEeCC
Confidence 69999999999999 9999999999999999999985444 2345543
No 380
>PRK11534 DNA-binding transcriptional regulator CsiR; Provisional
Probab=79.14 E-value=3 Score=35.87 Aligned_cols=38 Identities=21% Similarity=0.170 Sum_probs=34.6
Q ss_pred CCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738 46 PGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 46 ~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
||..++..+||+.+|+ ....++.-|+.|...|+|+..+
T Consensus 27 pG~~L~e~eLae~lgV----SRtpVREAL~~L~~eGlv~~~~ 64 (224)
T PRK11534 27 PDEKLRMSLLTSRYAL----GVGPLREALSQLVAERLVTVVN 64 (224)
T ss_pred CCCcCCHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEEeC
Confidence 3468999999999999 8999999999999999999873
No 381
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=78.98 E-value=2.3 Score=38.44 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=27.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH 232 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~ 232 (333)
...++||||+|....=.-|..+..+.++++.|+ +..++.|+++
T Consensus 102 ~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~n 145 (299)
T PF05971_consen 102 EKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESAREN 145 (299)
T ss_dssp ---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHH
T ss_pred cceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHH
Confidence 467999999998865444433334899999999 7888888753
No 382
>COG1802 GntR Transcriptional regulators [Transcription]
Probab=78.89 E-value=3.7 Score=35.48 Aligned_cols=48 Identities=27% Similarity=0.352 Sum_probs=40.0
Q ss_pred CCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccc
Q 035738 46 PGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVS 102 (333)
Q Consensus 46 ~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~ 102 (333)
||.+++..+||+.+|+ +...++.-|..|+..|+|+..+ ...+..++.+
T Consensus 36 pG~~l~e~~La~~~gv----SrtPVReAL~rL~~eGlv~~~p-----~rG~~V~~~~ 83 (230)
T COG1802 36 PGERLSEEELAEELGV----SRTPVREALRRLEAEGLVEIEP-----NRGAFVAPLS 83 (230)
T ss_pred CCCCccHHHHHHHhCC----CCccHHHHHHHHHHCCCeEecC-----CCCCeeCCCC
Confidence 3479999999999999 9999999999999999999973 4445555444
No 383
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=78.83 E-value=9.3 Score=35.17 Aligned_cols=78 Identities=17% Similarity=0.126 Sum_probs=55.7
Q ss_pred CCCCCeEEEEcCC-ccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-CCe------------------EEEccCChhHH
Q 035738 188 FDNIKQLVDVGGG-IGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-PCM------------------WILHDWNDEHC 246 (333)
Q Consensus 188 ~~~~~~vlDVGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~gv------------------~vLh~~~~~~~ 246 (333)
..+..+|+-+|.| -|.++..++++.- .+++++|. ++-.+.|++. .+. -++-..+ +
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-- 239 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-- 239 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h--
Confidence 5567899999955 5678888888776 99999999 6767666654 111 2222223 2
Q ss_pred HHHHHHHHHhCCCCcEEEEEeeec
Q 035738 247 LKLLKNCYKSIPEDGKVIAVELML 270 (333)
Q Consensus 247 ~~lL~~~~~~L~pgG~l~i~e~~~ 270 (333)
.-+....+.|++||+++++-...
T Consensus 240 -~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 240 -ATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred -hhHHHHHHHHhcCCEEEEECCCC
Confidence 46778889999999999988753
No 384
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=78.82 E-value=2.8 Score=34.66 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=40.1
Q ss_pred hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
.-|++.|.+. |..|-++||..+|+ ...-++++|.+|...|++...
T Consensus 21 ~~v~~~l~~k---ge~tDeela~~l~i----~~~~vrriL~~L~e~~li~~~ 65 (176)
T COG1675 21 VLVVDALLEK---GELTDEELAELLGI----KKNEVRRILYALYEDGLISYR 65 (176)
T ss_pred hHHHHHHHhc---CCcChHHHHHHhCc----cHHHHHHHHHHHHhCCceEEE
Confidence 4577888875 47999999999999 899999999999999999965
No 385
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=78.79 E-value=2.3 Score=37.61 Aligned_cols=46 Identities=22% Similarity=0.277 Sum_probs=41.3
Q ss_pred HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
+..|.+.|.+. +.+++.|||+.+++ .+.-++|=|+.|...|++.+.
T Consensus 7 ~~~Il~~L~~~---~~v~v~eLa~~l~V----S~~TIRRDL~~Le~~g~l~r~ 52 (256)
T PRK10434 7 QAAILEYLQKQ---GKTSVEELAQYFDT----TGTTIRKDLVILEHAGTVIRT 52 (256)
T ss_pred HHHHHHHHHHc---CCEEHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEE
Confidence 34577888886 59999999999999 999999999999999999987
No 386
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=78.56 E-value=9.1 Score=35.29 Aligned_cols=81 Identities=15% Similarity=0.190 Sum_probs=63.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CC-e------------------EEEccCCh
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PC-M------------------WILHDWND 243 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~g-v------------------~vLh~~~~ 243 (333)
.+.+|||.=+|.|-++..+++....- ++.+|+ |..++..+++ .+ + .|+-.++.
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~-V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~ 266 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPK-VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK 266 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCce-EEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence 47899999999999999999866544 999999 9888776653 11 1 55555553
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 035738 244 EHCLKLLKNCYKSIPEDGKVIAVELMLPE 272 (333)
Q Consensus 244 ~~~~~lL~~~~~~L~pgG~l~i~e~~~~~ 272 (333)
.+.+.+..+.+.+++||.+...+....+
T Consensus 267 -~a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 267 -SAHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred -cchhhHHHHHHHhhcCcEEEEEeccchh
Confidence 3357899999999999999999987654
No 387
>PF08221 HTH_9: RNA polymerase III subunit RPC82 helix-turn-helix domain; InterPro: IPR013197 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae (Baker's yeast) RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In S. cerevisiae, the enzyme is composed of 15 subunits, ranging from 10 kDa to about 160 kDa []. This region is probably a DNA-binding helix-turn-helix.; PDB: 2XV4_S 2XUB_A.
Probab=78.30 E-value=2.8 Score=28.20 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=35.7
Q ss_pred ChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 36 GIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 36 glfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
.|++.|-.. |+.|..+|.+.+++ +++.++.-|-.|.-.|++...
T Consensus 17 ~V~~~Ll~~---G~ltl~~i~~~t~l----~~~~Vk~~L~~LiQh~~v~y~ 60 (62)
T PF08221_consen 17 KVGEVLLSR---GRLTLREIVRRTGL----SPKQVKKALVVLIQHNLVQYF 60 (62)
T ss_dssp HHHHHHHHC----SEEHHHHHHHHT------HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHc---CCcCHHHHHHHhCC----CHHHHHHHHHHHHHcCCeeee
Confidence 356667765 59999999999999 999999999999999999864
No 388
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=77.99 E-value=8.4 Score=35.73 Aligned_cols=78 Identities=21% Similarity=0.216 Sum_probs=58.9
Q ss_pred CeEEEEcCC-ccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCCCC------------------------e-EEEccCChh
Q 035738 192 KQLVDVGGG-IGVTLQAITTKYPYIKGINFDL-PHVIEHVPPHPC------------------------M-WILHDWNDE 244 (333)
Q Consensus 192 ~~vlDVGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~g------------------------v-~vLh~~~~~ 244 (333)
.+|+-+||| .|.++..+++.+.-.++++.|. +.-++.|++.-+ + .++-.-.
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-- 247 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-- 247 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC--
Confidence 399999999 4788888899999899999999 888888876311 1 2222222
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 035738 245 HCLKLLKNCYKSIPEDGKVIAVELMLPE 272 (333)
Q Consensus 245 ~~~~lL~~~~~~L~pgG~l~i~e~~~~~ 272 (333)
....++.+.++++|+|+++++-....+
T Consensus 248 -~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 248 -SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred -CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 235788999999999999999876554
No 389
>PF02295 z-alpha: Adenosine deaminase z-alpha domain; InterPro: IPR000607 Double-stranded RNA-specific adenosine deaminase (3.5 from EC) converts multiple adenosines to inosines and creates I/U mismatched base pairs in double-helical RNA substrates without apparent sequence specificity. DRADA has been found to modify adenosines in AU-rich regions more frequently, probably due to the relative ease of melting A/U base pairs compared to G/C base pairs. The protein functions to modify viral RNA genomes, and may be responsible for hypermutation of certain negative-stranded viruses. DRADA edits the mRNAs for the glutamate receptor subunits by site-selective adenosine deamination. The DRADA repeat is also found in viral E3 proteins, which contain a double-stranded RNA-binding domain.; GO: 0003723 RNA binding, 0003726 double-stranded RNA adenosine deaminase activity; PDB: 1OYI_A 3EYI_A 2L4M_A 2HEO_D 1J75_A 1SFU_B 3IRR_B 2ACJ_C 3F22_B 2L54_A ....
Probab=77.59 E-value=3.1 Score=28.41 Aligned_cols=61 Identities=23% Similarity=0.223 Sum_probs=41.9
Q ss_pred HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccc
Q 035738 32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNS 100 (333)
Q Consensus 32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~ 100 (333)
-.+-.|++.|...| +.++..+|.+.|++. +..-+.+.|..|...|.|.+.. ..+..|+++.
T Consensus 4 ~~ee~Il~~L~~~g---~~~a~~ia~~~~L~~--~kk~VN~~LY~L~k~g~v~k~~---~~PP~W~l~~ 64 (66)
T PF02295_consen 4 DLEEKILDFLKELG---GSTATAIAKALGLSV--PKKEVNRVLYRLEKQGKVCKEG---GTPPKWSLTE 64 (66)
T ss_dssp HHHHHHHHHHHHHT---SSEEEHHHHHHHHTS---HHHHHHHHHHHHHTTSEEEEC---SSSTEEEE-H
T ss_pred hHHHHHHHHHHhcC---CccHHHHHHHhCcch--hHHHHHHHHHHHHHCCCEeeCC---CCCCceEecc
Confidence 34667888888874 555555666555510 4688999999999999999862 2466777654
No 390
>TIGR01321 TrpR trp operon repressor, proteobacterial. This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.
Probab=77.43 E-value=3.2 Score=30.44 Aligned_cols=41 Identities=17% Similarity=0.142 Sum_probs=34.0
Q ss_pred HHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHh
Q 035738 30 QAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLA 78 (333)
Q Consensus 30 ~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~ 78 (333)
..+.+.||+..|-+ ++.|-.|||+.+|+ ....+.|+=+.|.
T Consensus 40 ~l~~R~~i~~~Ll~----~~~tQrEIa~~lGi----S~atIsR~sn~lk 80 (94)
T TIGR01321 40 DLGDRIRIVNELLN----GNMSQREIASKLGV----SIATITRGSNNLK 80 (94)
T ss_pred HHHHHHHHHHHHHh----CCCCHHHHHHHhCC----ChhhhhHHHhhcc
Confidence 34678999998877 48999999999999 8888888777665
No 391
>PF11994 DUF3489: Protein of unknown function (DUF3489); InterPro: IPR021880 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 84 to 211 amino acids in length. This protein has a single completely conserved residue W that may be functionally important.
Probab=77.43 E-value=6.4 Score=27.29 Aligned_cols=55 Identities=15% Similarity=0.239 Sum_probs=36.9
Q ss_pred hhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHH--hcccceeeeccCCCccccccc
Q 035738 37 IFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLL--ASYSVVECSLDASGARRLYSL 98 (333)
Q Consensus 37 lfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L--~~~g~l~~~~~~~~~~~~y~~ 98 (333)
|.+.|... ++.|+++|++++|. .+.-++..|--+ ...|+--.....+.....|++
T Consensus 15 li~mL~rp---~GATi~ei~~atGW----q~HTvRgalsg~~kKklGl~i~s~k~~g~~r~YrI 71 (72)
T PF11994_consen 15 LIAMLRRP---EGATIAEICEATGW----QPHTVRGALSGLLKKKLGLTITSEKVDGGGRRYRI 71 (72)
T ss_pred HHHHHcCC---CCCCHHHHHHhhCC----chhhHHHHHHHHHHHhcCcEEEeeecCCCeeeEee
Confidence 55667654 48899999999999 888888777777 556765544321112445654
No 392
>PF05732 RepL: Firmicute plasmid replication protein (RepL); InterPro: IPR008813 This entry consists of proteins thought to be involved in plasmid replication. ; GO: 0006260 DNA replication, 0006276 plasmid maintenance
Probab=77.33 E-value=2.5 Score=34.65 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=38.9
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccc
Q 035738 49 KLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVS 102 (333)
Q Consensus 49 ~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~ 102 (333)
-.|..+||+.+|+ ..+-+.|.+..|...+++.+. ..+.|.++|.-
T Consensus 75 ~~t~~~ia~~l~i----S~~Tv~r~ik~L~e~~iI~k~-----~~G~Y~iNP~~ 119 (165)
T PF05732_consen 75 VATQKEIAEKLGI----SKPTVSRAIKELEEKNIIKKI-----RNGAYMINPNF 119 (165)
T ss_pred EeeHHHHHHHhCC----CHHHHHHHHHHHHhCCcEEEc-----cCCeEEECcHH
Confidence 3588999999999 889999999999999999986 35778887754
No 393
>PF13518 HTH_28: Helix-turn-helix domain
Probab=77.15 E-value=3.3 Score=26.22 Aligned_cols=29 Identities=14% Similarity=0.143 Sum_probs=26.4
Q ss_pred CCHHHHHHHhCCCCCCCcccHHHHHHHHhcccc
Q 035738 50 LSASDIAAQLTTKNKDAPMMLDRILRLLASYSV 82 (333)
Q Consensus 50 ~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~ 82 (333)
.|..++|+.+|+ ++.-+.+|++.....|+
T Consensus 13 ~s~~~~a~~~gi----s~~tv~~w~~~y~~~G~ 41 (52)
T PF13518_consen 13 ESVREIAREFGI----SRSTVYRWIKRYREGGI 41 (52)
T ss_pred CCHHHHHHHHCC----CHhHHHHHHHHHHhcCH
Confidence 499999999999 99999999999888775
No 394
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=77.08 E-value=11 Score=35.58 Aligned_cols=42 Identities=12% Similarity=-0.003 Sum_probs=35.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH 232 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~ 232 (333)
.+.+|||+=|=||.++...+.... .++|.+|+ ..+++-|+++
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA-~~vt~VD~S~~al~~a~~N 259 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGA-SEVTSVDLSKRALEWAREN 259 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCC-CceEEEeccHHHHHHHHHH
Confidence 488999999999999998877553 37899999 6789888865
No 395
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.76 E-value=1.7 Score=35.29 Aligned_cols=79 Identities=19% Similarity=0.202 Sum_probs=48.6
Q ss_pred CCCeEEEEcCCccHH-HHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe-----------------------EEE
Q 035738 190 NIKQLVDVGGGIGVT-LQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM-----------------------WIL 238 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~-~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv-----------------------~vL 238 (333)
.+.+|+++|||--.+ +.-++...|...+-+-|- ...++..++. .+. .|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 347899999995444 445556667777766675 4444433321 111 222
Q ss_pred c---cCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738 239 H---DWNDEHCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 239 h---~~~~~~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
. -+-++....+.+.+...|+|.|+-++..+
T Consensus 109 aADClFfdE~h~sLvdtIk~lL~p~g~Al~fsP 141 (201)
T KOG3201|consen 109 AADCLFFDEHHESLVDTIKSLLRPSGRALLFSP 141 (201)
T ss_pred eccchhHHHHHHHHHHHHHHHhCcccceeEecC
Confidence 1 12355566888999999999988666555
No 396
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=76.72 E-value=3.2 Score=37.02 Aligned_cols=47 Identities=11% Similarity=0.175 Sum_probs=42.0
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
-...|.+.|.+. +..++.|||+.+|+ .+.=++|=|..|...|++.+.
T Consensus 18 R~~~Il~~L~~~---~~vtv~eLa~~l~V----S~~TIRRDL~~Le~~G~l~r~ 64 (269)
T PRK09802 18 RREQIIQRLRQQ---GSVQVNDLSALYGV----STVTIRNDLAFLEKQGIAVRA 64 (269)
T ss_pred HHHHHHHHHHHc---CCEeHHHHHHHHCC----CHHHHHHHHHHHHhCCCeEEE
Confidence 345678888886 48999999999999 999999999999999999987
No 397
>TIGR03433 padR_acidobact transcriptional regulator, Acidobacterial, PadR-family. Members of this protein family are putative transcriptional regulators of the PadR family, as found in species of the Acidobacteria. This family of proteins has expanded greatly in this lineage, and where it regularly is found in the vicinity of a putative transporter protein
Probab=76.64 E-value=5.2 Score=29.69 Aligned_cols=63 Identities=14% Similarity=0.217 Sum_probs=45.0
Q ss_pred hhhHhhhcCCCCCCCHHHHHHHh--------CCCCCCCcccHHHHHHHHhcccceeeec---cCCCcccccccccccccc
Q 035738 37 IFEIIDKAGPGAKLSASDIAAQL--------TTKNKDAPMMLDRILRLLASYSVVECSL---DASGARRLYSLNSVSKYY 105 (333)
Q Consensus 37 lfd~L~~~~~~g~~t~~ela~~~--------g~~~~~~~~~l~~lL~~L~~~g~l~~~~---~~~~~~~~y~~t~~~~~l 105 (333)
|+..|.+ +|.+--||.+.+ .+ ++.-+.+.|+-|...|++.... ++++....|++|+.++.+
T Consensus 9 iL~~L~~----~~~~GYei~~~l~~~~~~~~~i----~~gtlY~~L~rLe~~GlI~~~~~~~~~~~~rk~y~iT~~Gr~~ 80 (100)
T TIGR03433 9 ILKTLSL----GPLHGYGIAQRIQQISEDVLQV----EEGSLYPALHRLERRGWIAAEWGESENNRRAKFYRLTAAGRKQ 80 (100)
T ss_pred HHHHHhc----CCCCHHHHHHHHHHHcCCcccc----CCCcHHHHHHHHHHCCCeEEEeeecCCCCCceEEEECHHHHHH
Confidence 4455655 488888888886 34 7888999999999999999841 122233568888888655
Q ss_pred cc
Q 035738 106 VP 107 (333)
Q Consensus 106 ~~ 107 (333)
+.
T Consensus 81 l~ 82 (100)
T TIGR03433 81 LA 82 (100)
T ss_pred HH
Confidence 43
No 398
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=76.47 E-value=9.9 Score=32.05 Aligned_cols=82 Identities=13% Similarity=0.135 Sum_probs=48.2
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCCC---Ce----------------------EEEccC
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPHP---CM----------------------WILHDW 241 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~---gv----------------------~vLh~~ 241 (333)
.=..++|||.|.|+|..++..++.-. ..++..|+ |......+-+. ++ .++ |
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlf--y 153 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLF--Y 153 (218)
T ss_pred ccccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeecee--c
Confidence 45789999999999998887766543 23444565 44444333221 11 333 3
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 035738 242 NDEHCLKLLKNCYKSIPEDGKVIAVELMLPE 272 (333)
Q Consensus 242 ~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~ 272 (333)
+...+.++++-..+....|-.++|.++-.+.
T Consensus 154 ~~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 154 NHTEADRLIPWKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred CchHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 4445557777333333456677777775544
No 399
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=76.47 E-value=2.6 Score=25.64 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhc
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLAS 79 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~ 79 (333)
.+.|+++||+.+|+ ++..+.|..+....
T Consensus 7 ~~~~l~~iA~~~g~----S~~~f~r~Fk~~~g 34 (42)
T PF00165_consen 7 QKLTLEDIAEQAGF----SPSYFSRLFKKETG 34 (42)
T ss_dssp SS--HHHHHHHHTS-----HHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHCC----CHHHHHHHHHHHHC
Confidence 37999999999999 99999998876543
No 400
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=76.38 E-value=7.5 Score=32.31 Aligned_cols=77 Identities=18% Similarity=0.279 Sum_probs=46.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC---C--C----e-EEEccCChhHHHHHHHHHHHh-CC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH---P--C----M-WILHDWNDEHCLKLLKNCYKS-IP 258 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~---~--g----v-~vLh~~~~~~~~~lL~~~~~~-L~ 258 (333)
+...|+.+|||-=.....+...+++++++-+|.|++++.-++. . . . .+-.++.++. .+.++.+. +.
T Consensus 78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~---~~~~L~~~g~~ 154 (183)
T PF04072_consen 78 GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDS---WIDALPKAGFD 154 (183)
T ss_dssp TESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHH---HHHHHHHCTT-
T ss_pred CCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchh---hHHHHHHhCCC
Confidence 4569999999999999999988889999999999988765532 1 0 1 3444555543 33333322 44
Q ss_pred CC-cEEEEEeee
Q 035738 259 ED-GKVIAVELM 269 (333)
Q Consensus 259 pg-G~l~i~e~~ 269 (333)
++ ..+++.|-+
T Consensus 155 ~~~ptl~i~Egv 166 (183)
T PF04072_consen 155 PDRPTLFIAEGV 166 (183)
T ss_dssp TTSEEEEEEESS
T ss_pred CCCCeEEEEcch
Confidence 44 456666654
No 401
>TIGR03338 phnR_burk phosphonate utilization associated transcriptional regulator. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Polaromonas, Burkholderia, Ralstonia and Verminephrobacter.
Probab=76.18 E-value=3.8 Score=34.84 Aligned_cols=36 Identities=36% Similarity=0.413 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 47 GAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 47 ~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
|..++-.+||+.+|+ +...++.-|+.|...|+|+..
T Consensus 32 G~~L~e~~La~~lgV----SRtpVReAL~~L~~eGlv~~~ 67 (212)
T TIGR03338 32 GAKLNESDIAARLGV----SRGPVREAFRALEEAGLVRNE 67 (212)
T ss_pred CCEecHHHHHHHhCC----ChHHHHHHHHHHHHCCCEEEe
Confidence 468899999999999 999999999999999999987
No 402
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=75.90 E-value=3.9 Score=35.49 Aligned_cols=45 Identities=33% Similarity=0.374 Sum_probs=39.6
Q ss_pred ChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 36 GIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 36 glfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
.|++.|... +|..+..+||+++|+ .+..+++=++.|.+.|+++..
T Consensus 187 ~IL~~L~~~--egrlse~eLAerlGV----SRs~ireAlrkLE~aGvIe~r 231 (251)
T TIGR02787 187 HIFEELDGN--EGLLVASKIADRVGI----TRSVIVNALRKLESAGVIESR 231 (251)
T ss_pred HHHHHhccc--cccccHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec
Confidence 477788762 159999999999999 999999999999999999976
No 403
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=75.76 E-value=4.3 Score=35.54 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=39.8
Q ss_pred hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
..|.+.|.+. +..+.+|||+.+|+ .+.-++|-|..|...|.+.+.
T Consensus 7 ~~Il~~l~~~---~~~~~~eLa~~l~V----S~~TiRRdL~~L~~~~~l~r~ 51 (240)
T PRK10411 7 QAIVDLLLNH---TSLTTEALAEQLNV----SKETIRRDLNELQTQGKILRN 51 (240)
T ss_pred HHHHHHHHHc---CCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 3467788776 59999999999999 999999999999999999875
No 404
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=75.34 E-value=7.3 Score=34.48 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=31.5
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHC-----CCCeEEEeechh
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKY-----PYIKGINFDLPH 224 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~-----p~~~~~~~D~~~ 224 (333)
+.+...++|+|||.|.++..+.+.. +...++.+|...
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 5677899999999999999999888 567888898743
No 405
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=75.27 E-value=35 Score=27.94 Aligned_cols=50 Identities=14% Similarity=0.036 Sum_probs=34.2
Q ss_pred HHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeecC
Q 035738 247 LKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAI 323 (333)
Q Consensus 247 ~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 323 (333)
...++.+.+.|+++|.|.|.=.... .++.=++.++.+++||...+..+..
T Consensus 105 ~~Ff~Sa~~~L~~~G~IhVTl~~~~---------------------------py~~W~i~~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 105 RGFFKSASQLLKPDGEIHVTLKDGQ---------------------------PYDSWNIEELAAEAGLVLVRKVPFD 154 (166)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCCC---------------------------CCccccHHHHHHhcCCEEEEEecCC
Confidence 3568888889999998887654211 1222234577788999988887764
No 406
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=75.26 E-value=9 Score=35.98 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=18.1
Q ss_pred HHHHHHHhCCCCcEEEEEeeecCC
Q 035738 249 LLKNCYKSIPEDGKVIAVELMLPE 272 (333)
Q Consensus 249 lL~~~~~~L~pgG~l~i~e~~~~~ 272 (333)
+|+-=++-|.|||+++++-...++
T Consensus 219 FL~~Ra~ELvpGG~mvl~~~Gr~~ 242 (386)
T PLN02668 219 FLRARAQEMKRGGAMFLVCLGRTS 242 (386)
T ss_pred HHHHHHHHhccCcEEEEEEecCCC
Confidence 455556678999999998876653
No 407
>COG1497 Predicted transcriptional regulator [Transcription]
Probab=75.21 E-value=2.5 Score=36.45 Aligned_cols=85 Identities=14% Similarity=0.213 Sum_probs=57.8
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccccccCCCCCChhhhHhhc-cChhh
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQIT-HDKVF 126 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~-~~~~~ 126 (333)
+.....|||.++|+ .+.++...++-|+..|++++. ..++|..|..+..++...- ..++.++... ..-.+
T Consensus 24 p~v~q~eIA~~lgi----T~QaVsehiK~Lv~eG~i~~~-----gR~~Y~iTkkG~e~l~~~~-~dlr~f~~ev~~~l~~ 93 (260)
T COG1497 24 PRVKQKEIAKKLGI----TLQAVSEHIKELVKEGLIEKE-----GRGEYEITKKGAEWLLEQL-SDLRRFSEEVELVLDY 93 (260)
T ss_pred CCCCHHHHHHHcCC----CHHHHHHHHHHHHhccceeec-----CCeeEEEehhHHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 37899999999999 999999999999999999985 3568999998875543321 1233333322 11123
Q ss_pred HHhhhhhHH-HHhcCCC
Q 035738 127 LECWSQLKH-AILEGGI 142 (333)
Q Consensus 127 ~~~~~~L~~-~l~~g~~ 142 (333)
...|..+++ -++.|.+
T Consensus 94 ~~vw~AIA~edI~~Gd~ 110 (260)
T COG1497 94 VMVWTAIAKEDIKEGDT 110 (260)
T ss_pred HHHHHHhhHhhhccCCE
Confidence 446666543 3555543
No 408
>PF03428 RP-C: Replication protein C N-terminal domain; InterPro: IPR005090 Proteins in this group have homology with the RepC protein of Agrobacterium Ri and Ti plasmids []. They may be involved in plasmid replication and stabilisation functions.
Probab=74.87 E-value=4 Score=33.85 Aligned_cols=33 Identities=21% Similarity=0.198 Sum_probs=30.6
Q ss_pred CCHHHHHHHh-CCCCCCCcccHHHHHHHHhcccceeee
Q 035738 50 LSASDIAAQL-TTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 50 ~t~~ela~~~-g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
.|-.+|++.+ |+ .+.-++|.++.|+..|++.+.
T Consensus 71 pSN~~La~r~~G~----s~~tlrR~l~~LveaGLI~rr 104 (177)
T PF03428_consen 71 PSNAQLAERLNGM----SERTLRRHLARLVEAGLIVRR 104 (177)
T ss_pred cCHHHHHHHHcCC----CHHHHHHHHHHHHHCCCeeec
Confidence 3678999999 99 999999999999999999985
No 409
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=74.80 E-value=3.4 Score=31.70 Aligned_cols=67 Identities=21% Similarity=0.287 Sum_probs=47.2
Q ss_pred HHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCC-CcccHHHHHHHHhcccceeeeccCCCccccccccc
Q 035738 31 AVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKD-APMMLDRILRLLASYSVVECSLDASGARRLYSLNS 100 (333)
Q Consensus 31 ~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~-~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~ 100 (333)
+..+.-|++.|.+.+ ++.|++||-+.+.-+.+. +..-+.|-|+.|...|++.+...++ ....|....
T Consensus 7 T~~R~~Il~~l~~~~--~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~~~~~~-~~~~Y~~~~ 74 (120)
T PF01475_consen 7 TPQRLAILELLKESP--EHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRKIEFGD-GESRYELST 74 (120)
T ss_dssp HHHHHHHHHHHHHHS--SSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEEEEETT-SEEEEEESS
T ss_pred CHHHHHHHHHHHcCC--CCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEEEEcCC-CcceEeecC
Confidence 455677888888764 599999999999642111 4456899999999999999974221 234555543
No 410
>PRK09954 putative kinase; Provisional
Probab=73.93 E-value=3.6 Score=38.26 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=39.4
Q ss_pred HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhccccee
Q 035738 34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVE 84 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~ 84 (333)
+..|++.|.+. +++|..|||+.+|+ ....+.+.++.|...|++.
T Consensus 5 ~~~il~~l~~~---~~~s~~~la~~l~~----s~~~v~~~i~~L~~~g~i~ 48 (362)
T PRK09954 5 EKEILAILRRN---PLIQQNEIADILQI----SRSRVAAHIMDLMRKGRIK 48 (362)
T ss_pred HHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCcC
Confidence 44578888886 49999999999999 9999999999999999986
No 411
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=73.81 E-value=13 Score=32.02 Aligned_cols=34 Identities=15% Similarity=0.244 Sum_probs=32.3
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 49 KLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 49 ~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
|+|-++||+.+|+ .+..+.|.|+.|...|++...
T Consensus 184 ~lt~~~iA~~lG~----sr~tvsR~l~~l~~~g~I~~~ 217 (235)
T PRK11161 184 TMTRGDIGNYLGL----TVETISRLLGRFQKSGMLAVK 217 (235)
T ss_pred cccHHHHHHHhCC----cHHHHHHHHHHHHHCCCEEec
Confidence 6899999999999 999999999999999999985
No 412
>PRK11414 colanic acid/biofilm transcriptional regulator; Provisional
Probab=73.59 E-value=5.8 Score=34.03 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=34.1
Q ss_pred CCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 46 PGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 46 ~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
||..++..+||+.+|+ +...++.-|+.|...|+|+..
T Consensus 31 pG~~L~e~~La~~lgV----SRtpVREAL~~L~~eGLV~~~ 67 (221)
T PRK11414 31 PGARLITKNLAEQLGM----SITPVREALLRLVSVNALSVA 67 (221)
T ss_pred CCCccCHHHHHHHHCC----CchhHHHHHHHHHHCCCEEec
Confidence 3468899999999999 999999999999999999986
No 413
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=73.32 E-value=5.4 Score=34.95 Aligned_cols=48 Identities=19% Similarity=0.224 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccc
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVS 102 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~ 102 (333)
+++..+|||+.++- +|.-++-.+..|.++|+++-.+ |+ .+.|..|..+
T Consensus 24 r~IKgeeIA~~l~r----npGTVRNqmq~LkaLgLVegvp--GP-kGGY~PT~kA 71 (294)
T COG2524 24 RPIKGEEIAEVLNR----NPGTVRNQMQSLKALGLVEGVP--GP-KGGYKPTSKA 71 (294)
T ss_pred CCcchHHHHHHHcc----CcchHHHHHHHHHhcCcccccc--CC-CCCccccHHH
Confidence 59999999999999 9999999999999999999774 43 6778877544
No 414
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=73.12 E-value=2.6 Score=26.18 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=16.8
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHH
Q 035738 49 KLSASDIAAQLTTKNKDAPMMLDRILR 75 (333)
Q Consensus 49 ~~t~~ela~~~g~~~~~~~~~l~~lL~ 75 (333)
+.|+.+||+.+|+ ...-+.|+|+
T Consensus 21 G~si~~IA~~~gv----sr~TvyR~l~ 43 (45)
T PF02796_consen 21 GMSIAEIAKQFGV----SRSTVYRYLN 43 (45)
T ss_dssp T--HHHHHHHTTS-----HHHHHHHHC
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHh
Confidence 4999999999999 7777777764
No 415
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=72.20 E-value=33 Score=29.52 Aligned_cols=78 Identities=12% Similarity=0.020 Sum_probs=49.6
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCC--CeEEEeec--hhHhhhCCCCCCe--EEEccCChhHHHHHHHHHHHhCCCCcE
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPY--IKGINFDL--PHVIEHVPPHPCM--WILHDWNDEHCLKLLKNCYKSIPEDGK 262 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~--~~~~~~D~--~~~~~~a~~~~gv--~vLh~~~~~~~~~lL~~~~~~L~pgG~ 262 (333)
+....||-.||..|..+.++++.+.. .++...-. ..|.+.+.+ .|+ .=|..-+++++..++.+++.- |+|.
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~-~gl~~~kLDV~~~~~V~~v~~evr~~--~~Gk 81 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ-FGLKPYKLDVSKPEEVVTVSGEVRAN--PDGK 81 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh-hCCeeEEeccCChHHHHHHHHHHhhC--CCCc
Confidence 45678999999999999999988754 33332221 333332221 233 334444677788889888875 7888
Q ss_pred EEEEeee
Q 035738 263 VIAVELM 269 (333)
Q Consensus 263 l~i~e~~ 269 (333)
|-++-..
T Consensus 82 ld~L~NN 88 (289)
T KOG1209|consen 82 LDLLYNN 88 (289)
T ss_pred eEEEEcC
Confidence 7655443
No 416
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=72.04 E-value=4.3 Score=32.57 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=35.2
Q ss_pred ChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccce
Q 035738 36 GIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVV 83 (333)
Q Consensus 36 glfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l 83 (333)
-|+|+|-.+ +.+|-++||+.+|+ +...++++|..|..-+++
T Consensus 5 ~v~d~L~~~---~~~~dedLa~~l~i----~~n~vRkiL~~L~ed~~~ 45 (147)
T smart00531 5 LVLDALMRN---GCVTEEDLAELLGI----KQKQLRKILYLLYDEKLI 45 (147)
T ss_pred eehHHHHhc---CCcCHHHHHHHhCC----CHHHHHHHHHHHHhhhcc
Confidence 477888776 58999999999999 999999999999994443
No 417
>PRK09334 30S ribosomal protein S25e; Provisional
Probab=71.81 E-value=4.8 Score=29.01 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
--+|+..||+++++ +-...++.||.|...|++...
T Consensus 40 K~ITps~lserlkI----~~SlAr~~Lr~L~~kG~Ik~V 74 (86)
T PRK09334 40 KIVTPYTLASKYGI----KISVAKKVLRELEKRGVLVLY 74 (86)
T ss_pred cEEcHHHHHHHhcc----hHHHHHHHHHHHHHCCCEEEE
Confidence 36899999999999 999999999999999999876
No 418
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=71.64 E-value=14 Score=36.58 Aligned_cols=83 Identities=19% Similarity=0.277 Sum_probs=54.5
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCC-eEEEeec-h-hHhhhCCCCCCeEEEccCChhHHHHHHHHHHHh
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYI-KGINFDL-P-HVIEHVPPHPCMWILHDWNDEHCLKLLKNCYKS 256 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~-~~~~~D~-~-~~~~~a~~~~gv~vLh~~~~~~~~~lL~~~~~~ 256 (333)
.+-..|.-+.....|||++|..|.++.-.++..|-- -++|+|+ | .++..+- .+..+.+.+.|..-|+++...
T Consensus 34 Qln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp~~~c~-----t~v~dIttd~cr~~l~k~l~t 108 (780)
T KOG1098|consen 34 QLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKPIPNCD-----TLVEDITTDECRSKLRKILKT 108 (780)
T ss_pred HHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecccCCccc-----hhhhhhhHHHHHHHHHHHHHh
Confidence 344445435677889999999999999999999854 4688998 4 2333333 333456666777777776665
Q ss_pred CCCCcEEEEEeee
Q 035738 257 IPEDGKVIAVELM 269 (333)
Q Consensus 257 L~pgG~l~i~e~~ 269 (333)
-+- -+++.|..
T Consensus 109 ~~a--dvVLhDga 119 (780)
T KOG1098|consen 109 WKA--DVVLHDGA 119 (780)
T ss_pred CCC--cEEeecCC
Confidence 444 34555543
No 419
>PF09904 HTH_43: Winged helix-turn helix; InterPro: IPR017162 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 3KE2_B.
Probab=71.63 E-value=4.8 Score=29.12 Aligned_cols=47 Identities=4% Similarity=0.085 Sum_probs=30.3
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCc--ccccccc
Q 035738 49 KLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGA--RRLYSLN 99 (333)
Q Consensus 49 ~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~--~~~y~~t 99 (333)
..++..|-+.||+ +.+-++..+.+|..+|+.....++|.. .|.|+++
T Consensus 21 ~~nvp~L~~~TGm----PrRT~Qd~i~aL~~~~I~~~Fvq~G~R~~~GyY~i~ 69 (90)
T PF09904_consen 21 ERNVPALMEATGM----PRRTIQDTIKALPELGIECEFVQDGERNNAGYYRIS 69 (90)
T ss_dssp -B-HHHHHHHH-------HHHHHHHHHGGGGGT-EEEEE--TTS-S--EEEEE
T ss_pred CccHHHHHHHhCC----CHhHHHHHHHHhhcCCeEEEEEecCccCCCCcEEee
Confidence 5599999999999 999999999999999998875444422 3456554
No 420
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=71.55 E-value=22 Score=26.31 Aligned_cols=83 Identities=14% Similarity=0.201 Sum_probs=48.9
Q ss_pred EEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHH--hhCCCCC------cCCHHHHHHH
Q 035738 237 ILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMM--IQSPGGK------ERTRHEFMTL 308 (333)
Q Consensus 237 vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~--~~~~~g~------~rt~~e~~~l 308 (333)
+|=+++.++..++|+.+...- . +.+++. . .|.. .++.++.. -.++++. ...++++.+.
T Consensus 4 vLIHYp~~d~~~~l~~La~~t-~-~~~ifT-f-AP~T----------~~L~~m~~iG~lFP~~dRsp~i~~~~e~~l~~~ 69 (97)
T PF07109_consen 4 VLIHYPAEDAAQMLAHLASRT-R-GSLIFT-F-APRT----------PLLALMHAIGKLFPRPDRSPRIYPHREEDLRRA 69 (97)
T ss_pred eEeccCHHHHHHHHHHHHHhc-c-CcEEEE-E-CCCC----------HHHHHHHHHhccCCCCCCCCcEEEeCHHHHHHH
Confidence 566788888999999988753 3 333332 2 1221 11221111 1123332 2258899999
Q ss_pred HHhCCCCeeEEeecCCc--ee-EEEEeC
Q 035738 309 ATGAGFSGISCERAIGN--LW-VMEFYK 333 (333)
Q Consensus 309 l~~aGf~~~~~~~~~~~--~~-vie~~~ 333 (333)
++++||++.+...+..+ +| ++|+++
T Consensus 70 l~~~g~~~~r~~ris~gFY~S~llE~~r 97 (97)
T PF07109_consen 70 LAAAGWRIGRTERISSGFYISQLLEAVR 97 (97)
T ss_pred HHhCCCeeeecccccCcChHHHHhhccC
Confidence 99999999998777532 33 566553
No 421
>PRK00215 LexA repressor; Validated
Probab=71.49 E-value=6.7 Score=33.21 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
.+.|..|||+++|+| +...+.++|+.|...|++++.
T Consensus 22 ~~~s~~ela~~~~~~---~~~tv~~~l~~L~~~g~i~~~ 57 (205)
T PRK00215 22 YPPSRREIADALGLR---SPSAVHEHLKALERKGFIRRD 57 (205)
T ss_pred CCCCHHHHHHHhCCC---ChHHHHHHHHHHHHCCCEEeC
Confidence 378999999999985 577899999999999999986
No 422
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=71.23 E-value=31 Score=29.04 Aligned_cols=86 Identities=16% Similarity=0.173 Sum_probs=55.6
Q ss_pred CCCeEEEEcCCccHHHHHHHH----HCCCCeEEEeechh-Hh-hhCCCCCCe---------------------------E
Q 035738 190 NIKQLVDVGGGIGVTLQAITT----KYPYIKGINFDLPH-VI-EHVPPHPCM---------------------------W 236 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~----~~p~~~~~~~D~~~-~~-~~a~~~~gv---------------------------~ 236 (333)
++..|.++|.-.|..+.-++. .....+++++|++. .+ ..|++.|+| -
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv 148 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV 148 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE
Confidence 568899999888876665443 33456778877632 21 222322222 3
Q ss_pred EE-ccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCC
Q 035738 237 IL-HDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPN 275 (333)
Q Consensus 237 vL-h~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~ 275 (333)
+| .+.+.+.+.+.|+-....|.-|-++++.|...++-+.
T Consensus 149 ilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~ 188 (237)
T COG3510 149 ILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLPG 188 (237)
T ss_pred EecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCCC
Confidence 33 2345566677788888888999999999998877553
No 423
>PRK01381 Trp operon repressor; Provisional
Probab=70.89 E-value=5.9 Score=29.34 Aligned_cols=41 Identities=20% Similarity=0.153 Sum_probs=31.4
Q ss_pred HHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHh
Q 035738 30 QAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLA 78 (333)
Q Consensus 30 ~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~ 78 (333)
..+.+++|+..|-+ |+.|-.|||+.+|+ .-..+.|--++|.
T Consensus 40 al~~R~~I~~~L~~----g~~sQREIa~~lGv----SiaTITRgsn~Lk 80 (99)
T PRK01381 40 ALGTRVRIVEELLR----GELSQREIKQELGV----GIATITRGSNSLK 80 (99)
T ss_pred HHHHHHHHHHHHHc----CCcCHHHHHHHhCC----ceeeehhhHHHhc
Confidence 34678899999988 58999999999999 5555555544443
No 424
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=70.44 E-value=5.5 Score=35.13 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=41.4
Q ss_pred hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
..|.+.|.+. |.++++|||+.+|+ .+.=+||=|+.|...|++.+.
T Consensus 8 ~~Il~~l~~~---g~v~v~eLa~~~~V----S~~TIRRDL~~Le~~g~l~R~ 52 (253)
T COG1349 8 QKILELLKEK---GKVSVEELAELFGV----SEMTIRRDLNELEEQGLLLRV 52 (253)
T ss_pred HHHHHHHHHc---CcEEHHHHHHHhCC----CHHHHHHhHHHHHHCCcEEEE
Confidence 4578888887 59999999999999 999999999999999999997
No 425
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=69.64 E-value=7.5 Score=31.99 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=43.1
Q ss_pred HHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCC-CcccHHHHHHHHhcccceeee
Q 035738 31 AVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKD-APMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 31 ~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~-~~~~l~~lL~~L~~~g~l~~~ 86 (333)
+-.+.-|++.|...+ ++.|+++|.+.+.-..++ +..-+.|.|+.|+..|+|.+.
T Consensus 25 T~qR~~IL~~l~~~~--~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~~ 79 (169)
T PRK11639 25 TPQRLEVLRLMSLQP--GAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKV 79 (169)
T ss_pred CHHHHHHHHHHHhcC--CCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 556777888888653 699999999999642221 567789999999999999987
No 426
>PF00126 HTH_1: Bacterial regulatory helix-turn-helix protein, lysR family; InterPro: IPR000847 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family, the lysR family, groups together a range of proteins, including ampR, catM, catR, cynR, cysB, gltC, iciA, ilvY, irgB, lysR, metR, mkaC, mleR, nahR, nhaR, nodD, nolR, oxyR, pssR, rbcR, syrM, tcbR, tfdS and trpI [, , , , ]. The majority of these proteins appear to be transcription activators and most are known to negatively regulate their own expression. All possess a potential HTH DNA-binding motif towards their N-termini.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3T1B_D 3SZP_A 1O7L_C 1B9N_A 1B9M_A 3FZJ_J 3FXR_B 3FXQ_A 3FXU_A 2IJL_B ....
Probab=69.51 E-value=5.2 Score=26.47 Aligned_cols=54 Identities=22% Similarity=0.234 Sum_probs=41.3
Q ss_pred HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhc---ccceeeeccCCCccccccccccc
Q 035738 34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLAS---YSVVECSLDASGARRLYSLNSVS 102 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~---~g~l~~~~~~~~~~~~y~~t~~~ 102 (333)
++.+|..+.+. .+...-|+.+++ .+..+.+.++.|.. .-++.+. ++.+.+|+.+
T Consensus 3 ~l~~f~~v~~~-----gs~~~AA~~l~i----s~~~vs~~i~~LE~~lg~~Lf~r~------~~~~~lT~~G 59 (60)
T PF00126_consen 3 QLRYFLAVAET-----GSISAAAEELGI----SQSAVSRQIKQLEEELGVPLFERS------GRGLRLTEAG 59 (60)
T ss_dssp HHHHHHHHHHH-----SSHHHHHHHCTS----SHHHHHHHHHHHHHHHTS-SEEEC------SSSEEE-HHH
T ss_pred HHHHHHHHHHh-----CCHHHHHHHhhc----cchHHHHHHHHHHHHhCCeEEEEC------CCCeeEChhh
Confidence 45678888885 389999999999 99999999988855 5678875 5568887764
No 427
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=69.36 E-value=27 Score=32.00 Aligned_cols=81 Identities=11% Similarity=0.132 Sum_probs=50.0
Q ss_pred CCCCCeEEEEcCC-ccHHHHHHHHH-CCCCeEEEeec-hhHhhhCCCC------------CCe-EEEccCChhHHHHHHH
Q 035738 188 FDNIKQLVDVGGG-IGVTLQAITTK-YPYIKGINFDL-PHVIEHVPPH------------PCM-WILHDWNDEHCLKLLK 251 (333)
Q Consensus 188 ~~~~~~vlDVGgG-~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~------------~gv-~vLh~~~~~~~~~lL~ 251 (333)
.....+||-+|+| .|..+..++++ ....++++.|. +.-++.++.. .++ .++...........++
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~~~~~~~g~d~viD~~G~~~~~~~~~ 240 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLIDDIPEDLAVDHAFECVGGRGSQSAIN 240 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehhhhhhccCCcEEEECCCCCccHHHHH
Confidence 3456789999965 45556666765 55667888887 5555554431 012 2222222110225788
Q ss_pred HHHHhCCCCcEEEEEee
Q 035738 252 NCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 252 ~~~~~L~pgG~l~i~e~ 268 (333)
...+.|+++|+++++-.
T Consensus 241 ~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 241 QIIDYIRPQGTIGLMGV 257 (341)
T ss_pred HHHHhCcCCcEEEEEee
Confidence 88999999999998764
No 428
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=69.19 E-value=6.2 Score=37.83 Aligned_cols=83 Identities=16% Similarity=0.128 Sum_probs=60.4
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCCC--------------Ce-----------------E
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPHP--------------CM-----------------W 236 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~--------------gv-----------------~ 236 (333)
+....+|-||-|.|.+...+....|..+.+++.+ |.+++.++++- |+ .
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 3456788888888999999999999999999999 99999998751 11 1
Q ss_pred EEccCC----------hh--HHHHHHHHHHHhCCCCcEEEEEeeecC
Q 035738 237 ILHDWN----------DE--HCLKLLKNCYKSIPEDGKVIAVELMLP 271 (333)
Q Consensus 237 vLh~~~----------~~--~~~~lL~~~~~~L~pgG~l~i~e~~~~ 271 (333)
++-+.+ +. -+..+|..++..|+|-|.++|.=.+.+
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~ 420 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRN 420 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCC
Confidence 111221 11 134789999999999999865544433
No 429
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=68.53 E-value=7.4 Score=31.14 Aligned_cols=55 Identities=22% Similarity=0.268 Sum_probs=43.3
Q ss_pred HHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCC-CCcccHHHHHHHHhcccceeeec
Q 035738 31 AVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNK-DAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 31 ~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~-~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
+--++.|++.|.+++ ++.|+++|=+.+.-..| ..+.-++|-|+.|...|+|.+..
T Consensus 20 T~qR~~vl~~L~~~~--~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~~~~ 75 (145)
T COG0735 20 TPQRLAVLELLLEAD--GHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVHRLE 75 (145)
T ss_pred CHHHHHHHHHHHhcC--CCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEEEEE
Confidence 446778899999764 57999999988874111 15667899999999999999874
No 430
>PF08222 HTH_CodY: CodY helix-turn-helix domain; InterPro: IPR013198 This family consists of the C-terminal helix-turn-helix domain found in several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; PDB: 2B0L_C.
Probab=68.44 E-value=4 Score=26.78 Aligned_cols=35 Identities=31% Similarity=0.376 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
|-.+++.||++.|+ ....+..-||-|.+.|+++..
T Consensus 3 g~lvas~iAd~~Gi----TRSvIVNALRKleSaGvIesr 37 (61)
T PF08222_consen 3 GRLVASKIADRVGI----TRSVIVNALRKLESAGVIESR 37 (61)
T ss_dssp EEE-HHHHHHHHT------HHHHHHHHHHHHHTTSEEEE
T ss_pred ceehHHHHHHHhCc----cHHHHHHHHHHHHhcCceeec
Confidence 46789999999999 888899999999999999965
No 431
>PF13814 Replic_Relax: Replication-relaxation
Probab=68.32 E-value=7.2 Score=32.45 Aligned_cols=61 Identities=16% Similarity=0.201 Sum_probs=46.1
Q ss_pred HhhhcCCCCCCCHHHHHHHhCCCCCCCcc---cHHHHHHHHhcccceeeeccC-----CCcccccccccccccccc
Q 035738 40 IIDKAGPGAKLSASDIAAQLTTKNKDAPM---MLDRILRLLASYSVVECSLDA-----SGARRLYSLNSVSKYYVP 107 (333)
Q Consensus 40 ~L~~~~~~g~~t~~ela~~~g~~~~~~~~---~l~~lL~~L~~~g~l~~~~~~-----~~~~~~y~~t~~~~~l~~ 107 (333)
.|.+. ..+|.++|+..+.. +.. .+++.|+-|...|+|...... |..+..|.+|+.+..++.
T Consensus 3 ~L~~~---r~lt~~Qi~~l~~~----~~~~~~~~~rrL~~L~~~glv~~~~~~~~~~~g~~~~vy~Lt~~G~~~l~ 71 (191)
T PF13814_consen 3 LLARH---RFLTTDQIARLLFP----SSKSERTARRRLKRLRELGLVDRFRRRVGARGGSQPYVYYLTPAGARLLA 71 (191)
T ss_pred hHHHh---cCcCHHHHHHHHcC----CCcchHHHHHHHHHHhhCCcEEeecccccccCCCcceEEEECHHHHHHHH
Confidence 45555 48999999999998 554 799999999999999987431 223556888887765554
No 432
>PRK09990 DNA-binding transcriptional regulator GlcC; Provisional
Probab=67.81 E-value=7.3 Score=34.08 Aligned_cols=38 Identities=21% Similarity=0.264 Sum_probs=34.2
Q ss_pred CCCCC-CHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738 46 PGAKL-SASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 46 ~~g~~-t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
||..+ +-.+||+.+|+ ....++.-|+.|...|+|+..+
T Consensus 27 pG~~LPsE~eLa~~~gV----SRtpVREAL~~L~~eGlV~~~~ 65 (251)
T PRK09990 27 VGQALPSERRLCEKLGF----SRSALREGLTVLRGRGIIETAQ 65 (251)
T ss_pred CCCcCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEeC
Confidence 34688 88999999999 9999999999999999999873
No 433
>PRK09775 putative DNA-binding transcriptional regulator; Provisional
Probab=67.75 E-value=6.8 Score=37.59 Aligned_cols=53 Identities=25% Similarity=0.239 Sum_probs=40.2
Q ss_pred hhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccc
Q 035738 37 IFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSV 101 (333)
Q Consensus 37 lfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~ 101 (333)
|...|.+ ||.|+.||++.+|+ +...+.+.|+.| .|+|.... .| ....|++...
T Consensus 5 ~~~~L~~----g~~~~~eL~~~l~~----sq~~~s~~L~~L--~~~V~~~~-~g-r~~~Y~l~~~ 57 (442)
T PRK09775 5 LTTLLLQ----GPLSAAELAARLGV----SQATLSRLLAAL--GDQVVRFG-KA-RATRYALLRP 57 (442)
T ss_pred HHHHHhc----CCCCHHHHHHHhCC----CHHHHHHHHHHh--hcceeEec-cC-ceEEEEeccc
Confidence 4456666 69999999999999 999999999999 78877663 22 2445666543
No 434
>PHA02591 hypothetical protein; Provisional
Probab=67.57 E-value=6.7 Score=27.45 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=25.4
Q ss_pred hhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHH
Q 035738 37 IFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILR 75 (333)
Q Consensus 37 lfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~ 75 (333)
+...|.+. +.|.++||+.+|+ +...+++.|+
T Consensus 51 vA~eL~eq----GlSqeqIA~~LGV----sqetVrKYL~ 81 (83)
T PHA02591 51 VTHELARK----GFTVEKIASLLGV----SVRKVRRYLE 81 (83)
T ss_pred HHHHHHHc----CCCHHHHHHHhCC----CHHHHHHHHh
Confidence 44566664 7999999999999 8888888876
No 435
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=67.09 E-value=9 Score=35.64 Aligned_cols=44 Identities=25% Similarity=0.390 Sum_probs=33.6
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechh
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPH 224 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~ 224 (333)
++++.+.++.+..+++|||.|.|.++.-+.-.| ++.+.++|-..
T Consensus 143 elvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq 186 (476)
T KOG2651|consen 143 ELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQ 186 (476)
T ss_pred HHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccch
Confidence 445544447788999999999999998777666 57788888743
No 436
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family. This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI.
Probab=67.04 E-value=9.7 Score=29.82 Aligned_cols=47 Identities=13% Similarity=0.165 Sum_probs=37.4
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHh----CCCCCCCcccHHHHHHHHhcccceeee
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQL----TTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~----g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
.|+.|.+.|=+. ++.|+.||.+.+ ++ ...-+..+|+-|...|+|.+.
T Consensus 5 ~E~~VM~vlW~~---~~~t~~eI~~~l~~~~~~----~~tTv~T~L~rL~~KG~v~~~ 55 (130)
T TIGR02698 5 AEWEVMRVVWTL---GETTSRDIIRILAEKKDW----SDSTIKTLLGRLVDKGCLTTE 55 (130)
T ss_pred HHHHHHHHHHcC---CCCCHHHHHHHHhhccCC----cHHHHHHHHHHHHHCCceeee
Confidence 455666777554 489999977776 56 778899999999999999976
No 437
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=66.61 E-value=6.4 Score=35.53 Aligned_cols=35 Identities=11% Similarity=0.210 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHH-HHhcccceeee
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILR-LLASYSVVECS 86 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~-~L~~~g~l~~~ 86 (333)
++.+++++|+.+|. ++..+.+.++ .|...|++..+
T Consensus 254 ~~~~~~~ia~~lg~----~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 254 GPVGLKTLAAALGE----DADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred CcccHHHHHHHhCC----CcchHHHhhhHHHHHcCCcccC
Confidence 58999999999999 9999999999 79999999754
No 438
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=66.26 E-value=3.9 Score=34.23 Aligned_cols=46 Identities=11% Similarity=0.087 Sum_probs=40.6
Q ss_pred HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
+..|.+.|.+. +..++.+||+.+|+ .+.-++|=|+.|...|++.+.
T Consensus 9 ~~~Il~~l~~~---~~~~~~~La~~~~v----S~~TiRRDl~~L~~~g~~~r~ 54 (185)
T PRK04424 9 QKALQELIEEN---PFITDEELAEKFGV----SIQTIRLDRMELGIPELRERI 54 (185)
T ss_pred HHHHHHHHHHC---CCEEHHHHHHHHCc----CHHHHHHHHHHHhcchHHHHH
Confidence 34567788876 59999999999999 999999999999999999975
No 439
>PF03297 Ribosomal_S25: S25 ribosomal protein; InterPro: IPR004977 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S25 ribosomal protein is a component of the 40S ribosomal subunit.; PDB: 2XZM_8 2XZN_8 3O30_Q 3U5G_Z 3IZB_V 3U5C_Z 3O2Z_Q 3IZ6_V.
Probab=66.09 E-value=7.7 Score=29.15 Aligned_cols=47 Identities=17% Similarity=0.220 Sum_probs=37.2
Q ss_pred hhhHhhhcCCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738 37 IFEIIDKAGPG-AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 37 lfd~L~~~~~~-g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
.||.|...-|. --+|+..||+++++ +-...++.|+.|.+.|++....
T Consensus 46 ~~~kl~kEV~~~K~ITp~~lserlkI----~~SlAr~~Lr~L~~kG~Ik~V~ 93 (105)
T PF03297_consen 46 TYDKLLKEVPKMKLITPSVLSERLKI----NGSLARKALRELESKGLIKPVS 93 (105)
T ss_dssp HHHHHHHHCTTSSCECHHHHHHHHCC----SCHHHHHHHHHHHHCCSSEEEE
T ss_pred HHHHHHHHhccCcEeeHHHHHHhHhh----HHHHHHHHHHHHHHCCCEEEEe
Confidence 44555432111 36899999999999 9999999999999999999873
No 440
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.80 E-value=3.7 Score=33.16 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=29.2
Q ss_pred EEEccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738 236 WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 236 ~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
+|+-+++-++-...++.+.+.|+|||+|-|.-+
T Consensus 55 HvlEHlt~~Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 55 HVLEHLTYDEGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcC
Confidence 777777778888999999999999999988776
No 441
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=65.68 E-value=38 Score=27.22 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=27.0
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL 222 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~ 222 (333)
+....+.+.+ .-|+|+|=|+|.+=-.+.+.+|+-++.++|.
T Consensus 20 ~a~~~v~~~~--G~VlElGLGNGRTydHLRe~~p~R~I~vfDR 60 (160)
T PF12692_consen 20 WAAAQVAGLP--GPVLELGLGNGRTYDHLREIFPDRRIYVFDR 60 (160)
T ss_dssp HHHHHTTT----S-EEEE--TTSHHHHHHHHH--SS-EEEEES
T ss_pred HHHHHhcCCC--CceEEeccCCCccHHHHHHhCCCCeEEEEee
Confidence 3444443333 5699999999999999999999999999997
No 442
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=65.64 E-value=24 Score=32.69 Aligned_cols=62 Identities=18% Similarity=0.308 Sum_probs=39.7
Q ss_pred CchhHHHHHHHHhhhhhhhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHH----CC----CCeEEEeec-hhH
Q 035738 159 DPGFNKHFNTVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTK----YP----YIKGINFDL-PHV 225 (333)
Q Consensus 159 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~----~p----~~~~~~~D~-~~~ 225 (333)
.|+..+.|....+.+.-..+ ..+. .+.+..+|++|.|+|.++.-+++. +| .+++.+++. |..
T Consensus 51 Apels~lFGella~~~~~~w----q~~g-~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L 121 (370)
T COG1565 51 APELSQLFGELLAEQFLQLW----QELG-RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPEL 121 (370)
T ss_pred chhHHHHHHHHHHHHHHHHH----HHhc-CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHH
Confidence 36667777765543332222 2222 445678999999999999877754 34 567777877 444
No 443
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=65.47 E-value=8.5 Score=32.94 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=37.9
Q ss_pred ChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 36 GIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 36 glfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
.|++.++++. .+.|..|||+++++ .+.-++..+..|+..|++..+
T Consensus 166 ~Vl~~~~~g~--~g~s~~eIa~~l~i----S~~Tv~~~~~~~~~~~~~~~~ 210 (225)
T PRK10046 166 AVRKLFKEPG--VQHTAETVAQALTI----SRTTARRYLEYCASRHLIIAE 210 (225)
T ss_pred HHHHHHHcCC--CCcCHHHHHHHhCc----cHHHHHHHHHHHHhCCeEEEE
Confidence 4566666521 25899999999999 999999999999999999976
No 444
>PF05331 DUF742: Protein of unknown function (DUF742); InterPro: IPR007995 This family consists of several uncharacterised Streptomyces proteins as well as one from Mycobacterium tuberculosis. The function of these proteins is unknown.
Probab=65.35 E-value=8.9 Score=29.31 Aligned_cols=34 Identities=26% Similarity=0.275 Sum_probs=32.3
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 49 KLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 49 ~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
+.|+.|||..+++ +...++-++--|...|++...
T Consensus 55 ~~SVAEiAA~L~l----PlgVvrVLvsDL~~~G~v~v~ 88 (114)
T PF05331_consen 55 PLSVAEIAARLGL----PLGVVRVLVSDLADAGLVRVR 88 (114)
T ss_pred CccHHHHHHhhCC----CchhhhhhHHHHHhCCCEEEe
Confidence 8999999999999 899999999999999999975
No 445
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=65.32 E-value=7 Score=32.95 Aligned_cols=34 Identities=18% Similarity=0.416 Sum_probs=32.3
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 49 KLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 49 ~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
+.|-.+||+.+|+ .+..+.|.|+.|...|++...
T Consensus 168 ~~t~~~lA~~lG~----tr~tvsR~l~~l~~~gii~~~ 201 (211)
T PRK11753 168 KITRQEIGRIVGC----SREMVGRVLKMLEDQGLISAH 201 (211)
T ss_pred CCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEec
Confidence 7889999999999 999999999999999999975
No 446
>TIGR02812 fadR_gamma fatty acid metabolism transcriptional regulator FadR. Members of this family are FadR, a transcriptional regulator of fatty acid metabolism, including both biosynthesis and beta-oxidation. It is found exclusively in a subset of Gammaproteobacteria, with strictly one copy per genome. It has an N-terminal DNA-binding domain and a less well conserved C-terminal long chain acyl-CoA-binding domain. FadR from this family heterologously expressed in Escherichia coli show differences in regulatory response and fatty acid binding profiles. The family is nevertheless designated equivalog, as all member proteins have at least nominally the same function.
Probab=65.32 E-value=9 Score=33.16 Aligned_cols=36 Identities=17% Similarity=0.263 Sum_probs=33.4
Q ss_pred CCCC-CHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 47 GAKL-SASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 47 ~g~~-t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
|..+ |-.+||+.+|+ ....++.-|+.|...|+|+..
T Consensus 27 G~~LpsE~~La~~lgV----SRtpVREAL~~Le~eGlV~~~ 63 (235)
T TIGR02812 27 GSILPAERELSELIGV----TRTTLREVLQRLARDGWLTIQ 63 (235)
T ss_pred CCcCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 4678 89999999999 999999999999999999987
No 447
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=65.23 E-value=33 Score=32.10 Aligned_cols=54 Identities=24% Similarity=0.202 Sum_probs=40.4
Q ss_pred HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCC---------------------------------------eEE
Q 035738 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYI---------------------------------------KGI 218 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~---------------------------------------~~~ 218 (333)
+..++..- +|.....++|==||+|.++++.+...+++ .++
T Consensus 180 AaAil~la-gw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~ 258 (381)
T COG0116 180 AAAILLLA-GWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIY 258 (381)
T ss_pred HHHHHHHc-CCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEE
Confidence 33444433 37677899999999999999988766532 267
Q ss_pred Eeec-hhHhhhCCCC
Q 035738 219 NFDL-PHVIEHVPPH 232 (333)
Q Consensus 219 ~~D~-~~~~~~a~~~ 232 (333)
+.|+ +.+++.|+.+
T Consensus 259 G~Did~r~i~~Ak~N 273 (381)
T COG0116 259 GSDIDPRHIEGAKAN 273 (381)
T ss_pred EecCCHHHHHHHHHH
Confidence 9999 8899988875
No 448
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.
Probab=65.18 E-value=9.7 Score=33.95 Aligned_cols=45 Identities=11% Similarity=0.180 Sum_probs=38.1
Q ss_pred CCCHHHHHHHhC--CCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccc
Q 035738 49 KLSASDIAAQLT--TKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVS 102 (333)
Q Consensus 49 ~~t~~ela~~~g--~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~ 102 (333)
..++++||+.++ + +..-++.-|+.|...|+++++ .++.|..|..+
T Consensus 137 ~~~~~~ia~~l~p~i----s~~ev~~sL~~L~~~glikk~-----~~g~y~~t~~~ 183 (271)
T TIGR02147 137 ADDPEELAKRCFPKI----SAEQVKESLDLLERLGLIKKN-----EDGFYKQTDKA 183 (271)
T ss_pred CCCHHHHHHHhCCCC----CHHHHHHHHHHHHHCCCeeEC-----CCCcEEeecce
Confidence 447899999999 6 778899999999999999987 36789888664
No 449
>PRK10225 DNA-binding transcriptional repressor UxuR; Provisional
Probab=64.99 E-value=8.6 Score=33.80 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=33.2
Q ss_pred CCCC-CHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 47 GAKL-SASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 47 ~g~~-t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
|..+ |-.+||+.+|+ +...++.-|+.|.+.|+|+..
T Consensus 30 G~~LpsE~eLa~~~gV----SRtpVREAL~~L~~eGlV~~~ 66 (257)
T PRK10225 30 GERLPPEREIAEMLDV----TRTVVREALIMLEIKGLVEVR 66 (257)
T ss_pred CCcCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 4578 68899999999 999999999999999999987
No 450
>PRK13239 alkylmercury lyase; Provisional
Probab=64.24 E-value=6.6 Score=33.35 Aligned_cols=39 Identities=15% Similarity=0.263 Sum_probs=31.2
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHh
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLA 78 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~ 78 (333)
+..-|++.|+++ .|.|+++||+.+|. +...++..|+.|.
T Consensus 23 ~~~~llr~la~G---~pvt~~~lA~~~~~----~~~~v~~~L~~l~ 61 (206)
T PRK13239 23 LLVPLLRLLAKG---RPVSVTTLAAALGW----PVEEVEAVLEAMP 61 (206)
T ss_pred HHHHHHHHHHcC---CCCCHHHHHHHhCC----CHHHHHHHHHhCC
Confidence 344567788864 69999999999999 8888887777764
No 451
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=64.03 E-value=10 Score=29.40 Aligned_cols=51 Identities=12% Similarity=0.010 Sum_probs=33.8
Q ss_pred HHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeecCCcee
Q 035738 248 KLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLW 327 (333)
Q Consensus 248 ~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~ 327 (333)
.+|+++++.++|||.+..... ....++-|.++||.+.++...+.--.
T Consensus 71 e~~~~l~~~~~~~~~l~Tys~---------------------------------a~~Vr~~L~~aGF~v~~~~g~g~Kr~ 117 (124)
T PF05430_consen 71 ELFKKLARLSKPGGTLATYSS---------------------------------AGAVRRALQQAGFEVEKVPGFGRKRE 117 (124)
T ss_dssp HHHHHHHHHEEEEEEEEES-----------------------------------BHHHHHHHHHCTEEEEEEE-STTSSE
T ss_pred HHHHHHHHHhCCCcEEEEeec---------------------------------hHHHHHHHHHcCCEEEEcCCCCCcch
Confidence 688899999998876543211 22468889999999877776655444
Q ss_pred EEEE
Q 035738 328 VMEF 331 (333)
Q Consensus 328 vie~ 331 (333)
.+.+
T Consensus 118 ~~~a 121 (124)
T PF05430_consen 118 MLRA 121 (124)
T ss_dssp EEEE
T ss_pred heEE
Confidence 4443
No 452
>TIGR03879 near_KaiC_dom probable regulatory domain. This model describes a common domain shared by two different families of proteins, each of which occurs regularly next to its corresponding partner family, a probable regulatory with homology to KaiC. By implication, this protein family likely is also involved in sensory transduction and/or regulation.
Probab=63.98 E-value=5.1 Score=27.95 Aligned_cols=33 Identities=18% Similarity=0.070 Sum_probs=29.2
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceee
Q 035738 49 KLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVEC 85 (333)
Q Consensus 49 ~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~ 85 (333)
..|..|||+.+|+ ++..+..++..+...|.+.+
T Consensus 32 GlS~kEIAe~LGI----S~~TVk~~l~~~~~~~~~~~ 64 (73)
T TIGR03879 32 GKTASEIAEELGR----TEQTVRNHLKGETKAGGLVK 64 (73)
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHhcCcccchHHH
Confidence 7899999999999 99999999998888877653
No 453
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=63.39 E-value=29 Score=31.21 Aligned_cols=42 Identities=12% Similarity=0.003 Sum_probs=33.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH 232 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~ 232 (333)
...+|||+=|=||.++...+. ....+++.+|. ..+++.++++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~-gGA~~v~~VD~S~~al~~a~~N 165 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAA-GGAKEVVSVDSSKRALEWAKEN 165 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHH-TTESEEEEEES-HHHHHHHHHH
T ss_pred CCCceEEecCCCCHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHH
Confidence 467999999999999997665 44457899999 7788888764
No 454
>PRK09462 fur ferric uptake regulator; Provisional
Probab=63.00 E-value=12 Score=29.85 Aligned_cols=56 Identities=18% Similarity=0.287 Sum_probs=42.4
Q ss_pred HHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCC-CcccHHHHHHHHhcccceeeec
Q 035738 31 AVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKD-APMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 31 ~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~-~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
+.-+.-|++.|.... +++.|++||-+++.-+.+. +..-+.|.|+.|+..|++.+..
T Consensus 16 T~qR~~Il~~l~~~~-~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~~~~ 72 (148)
T PRK09462 16 TLPRLKILEVLQEPD-NHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHN 72 (148)
T ss_pred CHHHHHHHHHHHhCC-CCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 456777888997531 1499999999998532221 5677899999999999999863
No 455
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=62.73 E-value=10 Score=31.81 Aligned_cols=76 Identities=16% Similarity=0.223 Sum_probs=50.5
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CCe--------EEEc-cC---------------Ch
Q 035738 192 KQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PCM--------WILH-DW---------------ND 243 (333)
Q Consensus 192 ~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~gv--------~vLh-~~---------------~~ 243 (333)
..+.|+|.|+|-++.-.+++. -+++.++. |...+.+.++ +|. ..+| ++ =+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A--~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA--ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhhh--ceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence 468999999999998777763 46888888 7777777665 331 1111 11 12
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738 244 EHCLKLLKNCYKSIPEDGKVIAVELM 269 (333)
Q Consensus 244 ~~~~~lL~~~~~~L~pgG~l~i~e~~ 269 (333)
++-+.+++.+.+-|+-++.++=.+-.
T Consensus 112 E~qVpV~n~vleFLr~d~tiiPq~v~ 137 (252)
T COG4076 112 EKQVPVINAVLEFLRYDPTIIPQEVR 137 (252)
T ss_pred ccccHHHHHHHHHhhcCCccccHHHh
Confidence 33356788888888888887755543
No 456
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=62.72 E-value=8.3 Score=31.90 Aligned_cols=34 Identities=21% Similarity=0.322 Sum_probs=32.4
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 49 KLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 49 ~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
|.|-+|||+.+|+ .+.-+.|.|+.|...|++...
T Consensus 143 ~~t~~~iA~~lG~----tretvsR~l~~l~~~g~I~~~ 176 (193)
T TIGR03697 143 RLSHQAIAEAIGS----TRVTITRLLGDLRKKKLISIH 176 (193)
T ss_pred CCCHHHHHHHhCC----cHHHHHHHHHHHHHCCCEEec
Confidence 6899999999999 999999999999999999975
No 457
>PRK09464 pdhR transcriptional regulator PdhR; Reviewed
Probab=62.50 E-value=10 Score=33.21 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=33.5
Q ss_pred CCCC-CHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738 47 GAKL-SASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 47 ~g~~-t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
|..+ +-.+||+.+|+ ....++.-|+.|...|+|+..+
T Consensus 31 G~~LpsE~eLa~~lgV----SRtpVREAL~~L~~eGlv~~~~ 68 (254)
T PRK09464 31 GEKLPPERELAKQFDV----SRPSLREAIQRLEAKGLLLRRQ 68 (254)
T ss_pred CCcCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEec
Confidence 3567 89999999999 9999999999999999999873
No 458
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=62.18 E-value=9.7 Score=33.42 Aligned_cols=40 Identities=20% Similarity=0.306 Sum_probs=28.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVP 230 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~ 230 (333)
...+||++|+|+|..+...+ .....+++.-|.|.+++...
T Consensus 86 ~~~~vlELGsGtglvG~~aa-~~~~~~v~ltD~~~~~~~L~ 125 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAA-LLLGAEVVLTDLPKVVENLK 125 (248)
T ss_pred cceeEEEecCCccHHHHHHH-HHhcceeccCCchhhHHHHH
Confidence 56789999999995444444 44556787788877665443
No 459
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=61.98 E-value=7.2 Score=35.04 Aligned_cols=43 Identities=9% Similarity=0.085 Sum_probs=33.9
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCC
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVP 230 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~ 230 (333)
.....+|||.-++.|.=+..+++... ...++..|+ +.-+...+
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~ 127 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLK 127 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHH
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHH
Confidence 55677899999999999999998876 567888898 65555443
No 460
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=61.90 E-value=12 Score=31.06 Aligned_cols=61 Identities=25% Similarity=0.316 Sum_probs=47.2
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccc
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVS 102 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~ 102 (333)
.+..|++.|...| .+.|+-+||.++|+ +..-+.|-|.-|...|.|...+. .+.+|...-..
T Consensus 5 ~~~~i~~~l~~~~--~~~~a~~i~k~l~i----~k~~vNr~LY~L~~~~~v~~~~~---~pP~W~~~~~~ 65 (183)
T PHA02701 5 CASLILTLLSSSG--DKLPAKRIAKELGI----SKHEANRCLYRLLESDAVSCEDG---CPPLWSVECEP 65 (183)
T ss_pred HHHHHHHHHHhcC--CCCcHHHHHHHhCc----cHHHHHHHHHHHhhcCcEecCCC---CCCccccccCC
Confidence 4567899999874 26999999999999 88889999999999999976521 35555554433
No 461
>PF09681 Phage_rep_org_N: N-terminal phage replisome organiser (Phage_rep_org_N); InterPro: IPR010056 This entry is represented by the N-terminal domain of Bacteriophage A500, Gp45. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The proteins in this entry contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The low-complexity region is adjacent to this N-terminal domain.
Probab=61.43 E-value=12 Score=28.86 Aligned_cols=44 Identities=9% Similarity=0.129 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccc
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNS 100 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~ 100 (333)
-|.|.++||..++- +..-++.-|..+...|+++.. +++.|.++.
T Consensus 52 ipy~~e~LA~~~~~----~~~~V~~AL~~f~k~glIe~~-----ed~~i~i~~ 95 (121)
T PF09681_consen 52 IPYTAEMLALEFDR----PVDTVRLALAVFQKLGLIEID-----EDGVIYIPN 95 (121)
T ss_pred CCCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe-----cCCeEEeec
Confidence 49999999999999 999999999999999999986 355555543
No 462
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=61.04 E-value=9.4 Score=30.21 Aligned_cols=35 Identities=11% Similarity=0.339 Sum_probs=27.1
Q ss_pred ChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHH
Q 035738 36 GIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILR 75 (333)
Q Consensus 36 glfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~ 75 (333)
.|-+.|.+++ +.+.|+.+|+++||+ ++..+.+|++
T Consensus 34 kV~~yLr~~p-~~~ati~eV~e~tgV----s~~~I~~~Ir 68 (137)
T TIGR03826 34 KVYKFLRKHE-NRQATVSEIVEETGV----SEKLILKFIR 68 (137)
T ss_pred HHHHHHHHCC-CCCCCHHHHHHHHCc----CHHHHHHHHH
Confidence 3556667653 124899999999999 9998888887
No 463
>COG1339 Transcriptional regulator of a riboflavin/FAD biosynthetic operon [Transcription / Coenzyme metabolism]
Probab=60.91 E-value=14 Score=31.00 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=32.0
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 49 KLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 49 ~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
..|..++|..+++ ++.-..|+|..|...|++++.
T Consensus 19 ~~t~~ela~~l~~----S~qta~R~l~~le~~~~I~R~ 52 (214)
T COG1339 19 KVTSSELAKRLGV----SSQTAARKLKELEDEGYITRT 52 (214)
T ss_pred cccHHHHHHHhCc----CcHHHHHHHHhhccCCcEEEE
Confidence 5899999999999 899999999999999999986
No 464
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=60.91 E-value=25 Score=30.24 Aligned_cols=44 Identities=16% Similarity=0.114 Sum_probs=33.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCC-C-eEEEeec-hhHhhhCCCC
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPY-I-KGINFDL-PHVIEHVPPH 232 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~-~-~~~~~D~-~~~~~~a~~~ 232 (333)
+.+.++-|==||+|.++.-+.--+++ + ++++-|+ +++++.|+++
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kN 96 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKN 96 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHh
Confidence 56789999999999998887665554 3 4688899 8899988864
No 465
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=60.84 E-value=15 Score=33.71 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=32.4
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 49 KLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 49 ~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
.+|-+|||+++|+ ....+.|+|......|+|+..
T Consensus 29 g~tQ~eIA~~lgi----SR~~VsRlL~~Ar~~GiV~I~ 62 (318)
T PRK15418 29 GLTQSEIGERLGL----TRLKVSRLLEKGRQSGIIRVQ 62 (318)
T ss_pred CCCHHHHHHHhCC----CHHHHHHHHHHHHHcCcEEEE
Confidence 7899999999999 999999999999999999875
No 466
>COG0640 ArsR Predicted transcriptional regulators [Transcription]
Probab=60.47 E-value=16 Score=26.18 Aligned_cols=52 Identities=19% Similarity=0.333 Sum_probs=44.7
Q ss_pred HHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 28 AMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 28 ~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
++....++.++..|.+. .+.++.+|+..+++ ....+.+.|..|...|++...
T Consensus 21 ~l~~~~r~~il~~l~~~---~~~~~~~l~~~~~~----~~~~v~~hL~~L~~~glv~~~ 72 (110)
T COG0640 21 ALADPTRLEILSLLAEG---GELTVGELAEALGL----SQSTVSHHLKVLREAGLVELR 72 (110)
T ss_pred HhCCHHHHHHHHHHHhc---CCccHHHHHHHHCC----ChhHHHHHHHHHHHCCCeEEE
Confidence 44555778888888873 27899999999999 999999999999999999986
No 467
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=60.44 E-value=45 Score=32.60 Aligned_cols=72 Identities=17% Similarity=0.242 Sum_probs=47.8
Q ss_pred hhhhhcCCchhHHHHHHHHhhhhhhhHHHHHhhccCCC--CCCeEEEEcCCccHHHHHHHHH----CCCCeEEEeec-hh
Q 035738 152 TFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKGFD--NIKQLVDVGGGIGVTLQAITTK----YPYIKGINFDL-PH 224 (333)
Q Consensus 152 ~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~--~~~~vlDVGgG~G~~~~~l~~~----~p~~~~~~~D~-~~ 224 (333)
-|+.++++|-....|++|. ...+.+..++-+ ....|.-+|+|.|=+..+.+++ ...++.+.++- |.
T Consensus 334 TYetFEkD~VKY~~Yq~Ai-------~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPN 406 (649)
T KOG0822|consen 334 TYETFEKDPVKYDQYQQAI-------LKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPN 406 (649)
T ss_pred hhhhhhccchHHHHHHHHH-------HHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcc
Confidence 3677788887777777655 345666655333 3678889999999887766543 45566777765 66
Q ss_pred HhhhCC
Q 035738 225 VIEHVP 230 (333)
Q Consensus 225 ~~~~a~ 230 (333)
++-...
T Consensus 407 AivtL~ 412 (649)
T KOG0822|consen 407 AIVTLQ 412 (649)
T ss_pred hhhhhh
Confidence 554443
No 468
>PF14338 Mrr_N: Mrr N-terminal domain
Probab=60.28 E-value=19 Score=26.16 Aligned_cols=34 Identities=9% Similarity=0.197 Sum_probs=26.0
Q ss_pred HHHHHHHHhcccceeeeccCCCccccccccccccccccC
Q 035738 70 LDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPN 108 (333)
Q Consensus 70 l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~~~ 108 (333)
+.=-+..|...|+++.+ +.+.|.+|+.+..++..
T Consensus 57 i~Wa~~~L~~aGli~~~-----~rG~~~iT~~G~~~l~~ 90 (92)
T PF14338_consen 57 IRWARSYLKKAGLIERP-----KRGIWRITEKGRKALAE 90 (92)
T ss_pred HHHHHHHHHHCCCccCC-----CCCceEECHhHHHHHhh
Confidence 33346788999999986 47899999998866543
No 469
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=60.20 E-value=39 Score=30.46 Aligned_cols=76 Identities=14% Similarity=0.180 Sum_probs=48.1
Q ss_pred CCCeEEEEcCC-ccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------CCe-EEEccCChhHHHHHHHHHHHh
Q 035738 190 NIKQLVDVGGG-IGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------PCM-WILHDWNDEHCLKLLKNCYKS 256 (333)
Q Consensus 190 ~~~~vlDVGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~gv-~vLh~~~~~~~~~lL~~~~~~ 256 (333)
...++|-+|+| .|.++..+++...--.++++|. +.-++.+.+. .++ .++.....+ ..++.+.+.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~~~~g~Dvvid~~G~~---~~~~~~~~~ 220 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKDPRRDYRAIYDASGDP---SLIDTLVRR 220 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhccCCCCCEEEECCCCH---HHHHHHHHh
Confidence 34578888854 6777788888775444666776 5555555432 012 222222222 467888999
Q ss_pred CCCCcEEEEEee
Q 035738 257 IPEDGKVIAVEL 268 (333)
Q Consensus 257 L~pgG~l~i~e~ 268 (333)
|+++|+++++-.
T Consensus 221 l~~~G~iv~~G~ 232 (308)
T TIGR01202 221 LAKGGEIVLAGF 232 (308)
T ss_pred hhcCcEEEEEee
Confidence 999999998764
No 470
>PRK09333 30S ribosomal protein S19e; Provisional
Probab=59.43 E-value=19 Score=28.89 Aligned_cols=62 Identities=10% Similarity=0.191 Sum_probs=42.6
Q ss_pred hhhHhhhcCCCCCCCHHHHHHHhCCCCCC---Ccc-------cHHHHHHHHhcccceeeeccCCCccccccccccccccc
Q 035738 37 IFEIIDKAGPGAKLSASDIAAQLTTKNKD---APM-------MLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYV 106 (333)
Q Consensus 37 lfd~L~~~~~~g~~t~~ela~~~g~~~~~---~~~-------~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~ 106 (333)
|+..|... ||+.+..|+...|.+.++ +.. .++..|+.|..+|+++.. ++.=.+|+.+..++
T Consensus 58 IlR~vY~~---gpvGV~~L~~~yGg~k~~G~~P~h~~~~sg~iiR~~LqqLE~~glVek~------~~GR~lT~~G~~~L 128 (150)
T PRK09333 58 ILRKVYID---GPVGVERLRTAYGGRKNRGVRPEHFVKGSGSIIRKILQQLEKAGLVEKT------KKGRVITPKGRSLL 128 (150)
T ss_pred HHHHHHHc---CCccHHHHHHHHCCCcCCCCCCCccccCccHHHHHHHHHHHHCCCeeeC------CCCCEeCHHHHHHH
Confidence 34555544 599999999999983211 222 389999999999999986 23334666665555
Q ss_pred c
Q 035738 107 P 107 (333)
Q Consensus 107 ~ 107 (333)
+
T Consensus 129 D 129 (150)
T PRK09333 129 D 129 (150)
T ss_pred H
Confidence 4
No 471
>PRK10421 DNA-binding transcriptional repressor LldR; Provisional
Probab=58.94 E-value=13 Score=32.62 Aligned_cols=36 Identities=31% Similarity=0.302 Sum_probs=32.8
Q ss_pred CCCC-CHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 47 GAKL-SASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 47 ~g~~-t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
+..+ +-.+||+.+|+ ....++.-|+.|...|+|+..
T Consensus 23 G~~LpsE~eLae~~gV----SRtpVREAL~~Le~~GlV~~~ 59 (253)
T PRK10421 23 GMKLPAERQLAMQLGV----SRNSLREALAKLVSEGVLLSR 59 (253)
T ss_pred CCcCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 3577 68899999999 999999999999999999976
No 472
>PRK11523 DNA-binding transcriptional repressor ExuR; Provisional
Probab=58.87 E-value=13 Score=32.49 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=33.1
Q ss_pred CCCC-CHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738 47 GAKL-SASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 47 ~g~~-t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
|..+ +-.+||+.+|+ ....++.-|+.|...|+|+..+
T Consensus 29 G~~LpsE~eLae~~gV----SRtpVREAL~~L~~eGlV~~~~ 66 (253)
T PRK11523 29 GDKLPAERFIADEKNV----SRTVVREAIIMLEVEGYVEVRK 66 (253)
T ss_pred CCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEec
Confidence 3578 57899999999 9999999999999999999873
No 473
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=58.85 E-value=37 Score=29.74 Aligned_cols=81 Identities=11% Similarity=0.111 Sum_probs=50.5
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-h----hHhhhCCCCCCe---------------------EEEcc
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTK-YPYIKGINFDL-P----HVIEHVPPHPCM---------------------WILHD 240 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~-~p~~~~~~~D~-~----~~~~~a~~~~gv---------------------~vLh~ 240 (333)
+....+||-+|.++|.....+..- -|+--+..++. + +.+..|++.+++ .|+.+
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFaD 233 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFAD 233 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEecc
Confidence 668899999999999877766552 34444444433 1 233444444332 66677
Q ss_pred CChhHHHHH-HHHHHHhCCCCcEEEEEee
Q 035738 241 WNDEHCLKL-LKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 241 ~~~~~~~~l-L~~~~~~L~pgG~l~i~e~ 268 (333)
.+.++-.++ .=++.--|++||-++|.=.
T Consensus 234 vaqpdq~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 234 VAQPDQARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred CCCchhhhhhhhhhhhhhccCCeEEEEEe
Confidence 765543333 3367777999998877654
No 474
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=58.70 E-value=11 Score=25.11 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.1
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHH
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRIL 74 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL 74 (333)
|.++..+||+++|+ ++.-++.|=
T Consensus 21 g~i~lkdIA~~Lgv----s~~tIr~WK 43 (60)
T PF10668_consen 21 GKIKLKDIAEKLGV----SESTIRKWK 43 (60)
T ss_pred CCccHHHHHHHHCC----CHHHHHHHh
Confidence 69999999999999 888777763
No 475
>PF06969 HemN_C: HemN C-terminal domain; InterPro: IPR010723 Proteins containing this domain are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX [], one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain suggest it may be a substrate binding domain.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1OLT_A.
Probab=58.32 E-value=13 Score=24.84 Aligned_cols=45 Identities=11% Similarity=0.112 Sum_probs=33.2
Q ss_pred CCCHHHHHHHhCCCCCCCc-ccHHHHHHHHhcccceeeeccCCCcccccccccccc
Q 035738 49 KLSASDIAAQLTTKNKDAP-MMLDRILRLLASYSVVECSLDASGARRLYSLNSVSK 103 (333)
Q Consensus 49 ~~t~~ela~~~g~~~~~~~-~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~ 103 (333)
+++.+++.++.|. +. .....-++.+...|+++.+ ++++++|+.+.
T Consensus 20 Gi~~~~~~~~~g~----~~~~~~~~~l~~l~~~Gll~~~------~~~l~lT~~G~ 65 (66)
T PF06969_consen 20 GIDLSEFEQRFGI----DFAEEFQKELEELQEDGLLEID------GGRLRLTEKGR 65 (66)
T ss_dssp EEEHHHHHHHTT------THHH-HHHHHHHHHTTSEEE-------SSEEEE-TTTG
T ss_pred CcCHHHHHHHHCc----CHHHHHHHHHHHHHHCCCEEEe------CCEEEECcccC
Confidence 7899999999998 53 3336778888999999986 78999988653
No 476
>PF09929 DUF2161: Uncharacterized conserved protein (DUF2161); InterPro: IPR018679 This family of various hypothetical prokaryotic proteins has no known function.
Probab=57.84 E-value=18 Score=27.75 Aligned_cols=50 Identities=20% Similarity=0.312 Sum_probs=36.7
Q ss_pred hHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccccc
Q 035738 39 EIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSK 103 (333)
Q Consensus 39 d~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~ 103 (333)
.+|.+. ||.+..+|++.+++ +. ..++|+- =-.|+|++. +.+.|.||+.+.
T Consensus 66 ~~L~~~---Gp~~~~~l~~~~~~-----~~-A~~IL~~-N~YGWFeRv-----~rGvY~LT~~G~ 115 (118)
T PF09929_consen 66 AALAEH---GPSRPADLRKATGV-----PK-ATSILRD-NHYGWFERV-----ERGVYALTPAGR 115 (118)
T ss_pred HHHHHc---CCCCHHHHHHhcCC-----Ch-HHHHHHh-Ccccceeee-----ccceEecCcchh
Confidence 467766 59999999999997 23 3333331 126999998 589999998875
No 477
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=57.04 E-value=37 Score=31.69 Aligned_cols=40 Identities=10% Similarity=-0.004 Sum_probs=32.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHV 229 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a 229 (333)
...+.+|++|+.+.....+.+.|+-++-.++++ ...+...
T Consensus 180 d~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~ 220 (364)
T KOG1269|consen 180 DGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTA 220 (364)
T ss_pred CcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhh
Confidence 457999999999999999999999888777776 4444443
No 478
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=57.02 E-value=96 Score=26.57 Aligned_cols=78 Identities=12% Similarity=0.134 Sum_probs=48.1
Q ss_pred CCCCCeEEEEcCCc-cHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------------------CCe-EEEccCC
Q 035738 188 FDNIKQLVDVGGGI-GVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------------------PCM-WILHDWN 242 (333)
Q Consensus 188 ~~~~~~vlDVGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------------------~gv-~vLh~~~ 242 (333)
.....+||..|+|+ |..+..+++... .++++.+. +...+.++.. .++ .++....
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~ 210 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVG 210 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCC
Confidence 35678999999885 667777777654 67777766 3333332211 011 2232222
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738 243 DEHCLKLLKNCYKSIPEDGKVIAVELM 269 (333)
Q Consensus 243 ~~~~~~lL~~~~~~L~pgG~l~i~e~~ 269 (333)
.. ..++.+.+.|+++|+++.+...
T Consensus 211 ~~---~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 211 GP---ETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred CH---HHHHHHHHhcccCCEEEEEccC
Confidence 21 4677778889999998887654
No 479
>PRK10736 hypothetical protein; Provisional
Probab=57.00 E-value=13 Score=34.79 Aligned_cols=44 Identities=7% Similarity=-0.055 Sum_probs=38.6
Q ss_pred hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
..|++.|.. .|.++++|+.++|+ +...+...|-.|.-.|++.+.
T Consensus 311 ~~v~~~l~~----~~~~iD~L~~~~~l----~~~~v~~~L~~LEl~G~v~~~ 354 (374)
T PRK10736 311 PELLANVGD----EVTPVDVVAERAGQ----PVPEVVTQLLELELAGWIAAV 354 (374)
T ss_pred HHHHHhcCC----CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCcEEEc
Confidence 457777764 48999999999999 999999999999999999987
No 480
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=56.50 E-value=30 Score=27.68 Aligned_cols=60 Identities=15% Similarity=0.047 Sum_probs=39.9
Q ss_pred EEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCCCCeEEEc----cCChhHHHHHHHHH
Q 035738 194 LVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCMWILH----DWNDEHCLKLLKNC 253 (333)
Q Consensus 194 vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~gv~vLh----~~~~~~~~~lL~~~ 253 (333)
.--+-||||.-..-.+.++|+++.-.+--+.....++++-+.+||. .+..+.+.++++.-
T Consensus 58 ~GIliCGtGiG~siaANK~~GIraa~~~d~~~A~~ar~hNnaNVl~lGar~ig~~~a~~iv~~f 121 (144)
T TIGR00689 58 LGILICGTGIGMSIAANKFKGIRAALCVDEYTAALARQHNDANVLCLGSRVVGVELALSIVDAF 121 (144)
T ss_pred eEEEEcCCcHHHHHHHhcCCCeEEEEECCHHHHHHHHHhcCCcEEEECccccCHHHHHHHHHHH
Confidence 3445799999999999999999987776666666666542323332 24555555555543
No 481
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=56.43 E-value=13 Score=28.51 Aligned_cols=67 Identities=15% Similarity=0.190 Sum_probs=44.8
Q ss_pred CccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---------------------C--Ce-EEEccCChhHHHHHHHHHH
Q 035738 200 GIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---------------------P--CM-WILHDWNDEHCLKLLKNCY 254 (333)
Q Consensus 200 G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------------~--gv-~vLh~~~~~~~~~lL~~~~ 254 (333)
|.|..+..+++... .++++.|. +.-++.+++. + ++ .++.....+ ..++...
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~---~~~~~~~ 76 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSG---DTLQEAI 76 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSSH---HHHHHHH
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCcH---HHHHHHH
Confidence 35777777887777 77777777 5455555432 1 12 333333322 6888999
Q ss_pred HhCCCCcEEEEEeeec
Q 035738 255 KSIPEDGKVIAVELML 270 (333)
Q Consensus 255 ~~L~pgG~l~i~e~~~ 270 (333)
+.++|+|+++++-...
T Consensus 77 ~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 77 KLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHEEEEEEEEEESSTS
T ss_pred HHhccCCEEEEEEccC
Confidence 9999999999988754
No 482
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=56.31 E-value=12 Score=32.21 Aligned_cols=34 Identities=15% Similarity=0.009 Sum_probs=31.8
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 49 KLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 49 ~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
+.|-++||+.+|+ .+..+.|.|..|...|++...
T Consensus 169 ~~t~~~lA~~lG~----sretvsR~L~~L~~~G~I~~~ 202 (226)
T PRK10402 169 HEKHTQAAEYLGV----SYRHLLYVLAQFIQDGYLKKS 202 (226)
T ss_pred cchHHHHHHHHCC----cHHHHHHHHHHHHHCCCEEee
Confidence 5688999999999 999999999999999999975
No 483
>PRK04984 fatty acid metabolism regulator; Provisional
Probab=56.12 E-value=16 Score=31.66 Aligned_cols=36 Identities=14% Similarity=0.184 Sum_probs=33.0
Q ss_pred CCC-CHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738 48 AKL-SASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 48 g~~-t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
..+ |-.+||+++|+ +..-++.-|+.|.+.|+|+..+
T Consensus 29 ~~LPsE~eLae~~gV----SRt~VReAL~~L~~eGlv~~~~ 65 (239)
T PRK04984 29 SILPAERELSELIGV----TRTTLREVLQRLARDGWLTIQH 65 (239)
T ss_pred CcCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEeC
Confidence 577 78899999999 9999999999999999999873
No 484
>PF13309 HTH_22: HTH domain
Probab=55.89 E-value=9.8 Score=25.70 Aligned_cols=37 Identities=30% Similarity=0.416 Sum_probs=27.4
Q ss_pred HHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHH
Q 035738 27 MAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILR 75 (333)
Q Consensus 27 ~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~ 75 (333)
.++....+.|+|+. .-+++.+|+.+|+ ...-+.+.|+
T Consensus 28 ~iV~~L~~~G~F~l--------Kgav~~vA~~L~i----S~~TVY~YLr 64 (64)
T PF13309_consen 28 EIVRQLYEKGIFLL--------KGAVEYVAEKLGI----SRATVYRYLR 64 (64)
T ss_pred HHHHHHHHCCCccc--------CcHHHHHHHHHCC----CHHHHHHHcC
Confidence 45666677777765 4589999999999 7776766653
No 485
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=55.88 E-value=11 Score=34.40 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=32.8
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 49 KLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 49 ~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
++|-.|||+++|+ ....+.|+|..+...|+|+..
T Consensus 26 gltQ~eIA~~Lgi----SR~~v~rlL~~Ar~~GiV~I~ 59 (321)
T COG2390 26 GLTQSEIAERLGI----SRATVSRLLAKAREEGIVKIS 59 (321)
T ss_pred CCCHHHHHHHhCC----CHHHHHHHHHHHHHCCeEEEE
Confidence 8999999999999 999999999999999999986
No 486
>COG4883 Uncharacterized protein conserved in archaea [Function unknown]
Probab=55.79 E-value=69 Score=28.95 Aligned_cols=86 Identities=21% Similarity=0.273 Sum_probs=55.6
Q ss_pred hHHhhhhhHHHHhcCCChhhhhcC-CChhhhhc-CCchhHHHHHHHHhhhhh---hhHHHHHhhccCCCCCCeEEEEc--
Q 035738 126 FLECWSQLKHAILEGGIPFNRAHG-MHTFEYAG-LDPGFNKHFNTVMYNYTS---LVMSNILESYKGFDNIKQLVDVG-- 198 (333)
Q Consensus 126 ~~~~~~~L~~~l~~g~~~~~~~~g-~~~~~~~~-~~~~~~~~f~~~m~~~~~---~~~~~~~~~~~~~~~~~~vlDVG-- 198 (333)
+++.+..|.+.+|-...||-..|. ....+.+. ++|..............+ ....+.+..+.+|-+++-|+|..
T Consensus 68 hyeil~sltdtvrpeddpfvehyqtp~ileilyeed~~f~ksv~kfie~ieksealigke~irryggfygptcvvdfal~ 147 (500)
T COG4883 68 HYEILTSLTDTVRPEDDPFVEHYQTPPILEILYEEDPAFHKSVMKFIEEIEKSEALIGKESIRRYGGFYGPTCVVDFALV 147 (500)
T ss_pred HHHHHHhhhcccCCCCCchhhhccCchHHHHHHhcCHHHHHHHHHHHHHHhHHHhhhhHHHHHHhcCccCCceEEEEEec
Confidence 455666778888876677776665 34455443 566666555555444443 45567777888888999999987
Q ss_pred -CCccHHHHHHHHH
Q 035738 199 -GGIGVTLQAITTK 211 (333)
Q Consensus 199 -gG~G~~~~~l~~~ 211 (333)
|.|.....++++.
T Consensus 148 pgstsnvvnrilk~ 161 (500)
T COG4883 148 PGSTSNVVNRILKK 161 (500)
T ss_pred CCchHHHHHHHHHh
Confidence 4444555566654
No 487
>PF05344 DUF746: Domain of Unknown Function (DUF746); InterPro: IPR008008 This is a short conserved region found in some transposons.
Probab=55.51 E-value=13 Score=25.12 Aligned_cols=33 Identities=21% Similarity=0.448 Sum_probs=27.1
Q ss_pred hhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhc
Q 035738 38 FEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLAS 79 (333)
Q Consensus 38 fd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~ 79 (333)
+..|.. +.|..+.|+.+|+ ++..+.+|++....
T Consensus 7 IrlLs~-----~~s~~~Aa~~lG~----~~~~v~~wv~~fR~ 39 (65)
T PF05344_consen 7 IRLLSQ-----QISVAQAADRLGT----DPGTVRRWVRMFRQ 39 (65)
T ss_pred HHHhcc-----cccHHHHHHHHCc----CHHHHHHHHHHHHH
Confidence 345555 8999999999999 99999999886544
No 488
>KOG2730 consensus Methylase [General function prediction only]
Probab=55.47 E-value=9.8 Score=32.69 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=35.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCCC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPHP 233 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ 233 (333)
+...|+|.-||.|..+..++.++|. ++.+|+ |.-+..|+.+.
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~--VisIdiDPikIa~AkhNa 136 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY--VIAIDIDPVKIACARHNA 136 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe--EEEEeccHHHHHHHhccc
Confidence 5678999999999999999999975 778898 67788888763
No 489
>PF09821 AAA_assoc_C: C-terminal AAA-associated domain; InterPro: IPR018632 Members of this family are found in various prokaryotic ABC transporters, predominantly involved in nitrate, sulphonate and bicarbonate translocation.
Probab=55.23 E-value=9 Score=29.59 Aligned_cols=46 Identities=13% Similarity=0.103 Sum_probs=40.5
Q ss_pred HHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccccccCC
Q 035738 54 DIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNK 109 (333)
Q Consensus 54 ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~~~~ 109 (333)
+||+.+++ +-+-+-.+++++.-+||++.. +|-..+|+.++.|...+
T Consensus 2 ~La~~l~~----eiDdL~p~~eAaelLgf~~~~------~Gdi~LT~~G~~f~~a~ 47 (120)
T PF09821_consen 2 QLADELHL----EIDDLLPIVEAAELLGFAEVE------EGDIRLTPLGRRFAEAD 47 (120)
T ss_pred chHHHhCC----cHHHHHHHHHHHHHcCCeeec------CCcEEeccchHHHHHCC
Confidence 48899999 888899999999999999986 67889999999888654
No 490
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=55.17 E-value=17 Score=31.33 Aligned_cols=34 Identities=26% Similarity=0.255 Sum_probs=31.9
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 49 KLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 49 ~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
+.|-++||..+|+ .+.-+.|.|+.|...|++...
T Consensus 179 ~lt~~~IA~~lGi----sretlsR~L~~L~~~GlI~~~ 212 (230)
T PRK09391 179 PMSRRDIADYLGL----TIETVSRALSQLQDRGLIGLS 212 (230)
T ss_pred cCCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEec
Confidence 6789999999999 999999999999999999864
No 491
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=55.04 E-value=31 Score=27.57 Aligned_cols=60 Identities=13% Similarity=0.038 Sum_probs=39.2
Q ss_pred EEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCCCCeEEEc----cCChhHHHHHHHHH
Q 035738 194 LVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCMWILH----DWNDEHCLKLLKNC 253 (333)
Q Consensus 194 vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~gv~vLh----~~~~~~~~~lL~~~ 253 (333)
.--+.||||.-..-.+.++|+++...+--+.....++++-+.+||. .+..+.+.++++..
T Consensus 59 ~GIliCGtGiG~siaANK~~GIraa~~~d~~~A~~ar~hNnaNvl~lG~r~~g~~~a~~iv~~f 122 (143)
T TIGR01120 59 GGILICGTGIGMSIAANKFAGIRAALCSEPYMAQMSRLHNDANVLCLGERVVGLELAKSIVDAW 122 (143)
T ss_pred eEEEEcCCcHHHHHHHhcCCCeEEEEECCHHHHHHHHHhcCCcEEEECcceeCHHHHHHHHHHH
Confidence 3446799999899999999999987776666666666542222222 24555555555543
No 492
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=55.00 E-value=13 Score=31.04 Aligned_cols=34 Identities=9% Similarity=0.187 Sum_probs=32.0
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 49 KLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 49 ~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
+.|-++||..+|+ .+..+.|.|..|...|++...
T Consensus 149 ~~t~~~iA~~lG~----tretvsR~l~~l~~~g~I~~~ 182 (202)
T PRK13918 149 YATHDELAAAVGS----VRETVTKVIGELSREGYIRSG 182 (202)
T ss_pred cCCHHHHHHHhCc----cHHHHHHHHHHHHHCCCEEcC
Confidence 6899999999999 999999999999999999964
No 493
>PF08280 HTH_Mga: M protein trans-acting positive regulator (MGA) HTH domain; InterPro: IPR013199 Mga is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions [].; PDB: 2WTE_A 3SQN_A.
Probab=54.62 E-value=12 Score=24.71 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=30.1
Q ss_pred HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHh
Q 035738 34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLA 78 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~ 78 (333)
++.|+..|-+. +..|..+||+.+|+ .++-++.-+..|-
T Consensus 7 q~~Ll~~L~~~---~~~~~~ela~~l~~----S~rti~~~i~~L~ 44 (59)
T PF08280_consen 7 QLKLLELLLKN---KWITLKELAKKLNI----SERTIKNDINELN 44 (59)
T ss_dssp HHHHHHHHHHH---TSBBHHHHHHHCTS-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CCCcHHHHHHHHCC----CHHHHHHHHHHHH
Confidence 55677777765 58999999999999 8888887777765
No 494
>TIGR00637 ModE_repress ModE molybdate transport repressor domain. ModE is a molybdate-activated repressor of the molybdate transport operon in E. coli. It consists of the domain represented by this model and two tandem copies of mop-like domain, where Mop proteins are a family of 68-residue molybdenum-pterin binding proteins of Clostridium pasteurianum. This model also represents the full length of a pair of archaeal proteins that lack Mop-like domains. PSI-BLAST analysis shows similarity to helix-turn-helix regulatory proteins.
Probab=54.17 E-value=18 Score=26.87 Aligned_cols=64 Identities=13% Similarity=0.056 Sum_probs=46.9
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhc---ccceeeeccCCCccccccccccccccc
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLAS---YSVVECSLDASGARRLYSLNSVSKYYV 106 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~---~g~l~~~~~~~~~~~~y~~t~~~~~l~ 106 (333)
-++.+|..+.+. -|+..-|+.+|+ .+..+.+-++.|.. .-++.+.+ .|..++.+.+|+.+..+.
T Consensus 5 ~~l~~~~av~~~-----gSis~AA~~L~i----S~stvs~~I~~LE~~lg~~Lf~R~~-~g~~~~g~~lT~~G~~l~ 71 (99)
T TIGR00637 5 RRVALLKAIARM-----GSISQAAKDAGI----SYKSAWDYIRAMNNLSGEPLVERAT-GGKGGGGAVLTEYGQRLI 71 (99)
T ss_pred HHHHHHHHHHHh-----CCHHHHHHHHCC----CHHHHHHHHHHHHHHhCCCeEEecC-CCCCCCCeeECHHHHHHH
Confidence 356788889985 488888999999 99999998888855 34577651 122245788888887655
No 495
>PRK00135 scpB segregation and condensation protein B; Reviewed
Probab=54.08 E-value=20 Score=30.11 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=35.6
Q ss_pred hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
+.++..++.. +|+|..||++..|+ +. ..+++.|...|++.+.
T Consensus 93 LEtLaiIay~---qPiTr~eI~~irGv----~~---~~ii~~L~~~gLI~e~ 134 (188)
T PRK00135 93 LEVLAIIAYK---QPITRIEIDEIRGV----NS---DGALQTLLAKGLIKEV 134 (188)
T ss_pred HHHHHHHHHc---CCcCHHHHHHHHCC----CH---HHHHHHHHHCCCeEEc
Confidence 4567778776 59999999999999 64 7899999999999864
No 496
>PRK03837 transcriptional regulator NanR; Provisional
Probab=53.89 E-value=19 Score=31.10 Aligned_cols=37 Identities=22% Similarity=0.263 Sum_probs=33.7
Q ss_pred CCCC-CHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738 47 GAKL-SASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 47 ~g~~-t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
|..+ +-.+||+.+|+ ....++.-|+.|...|+++..+
T Consensus 34 G~~Lp~E~~Lae~~gV----SRt~VREAL~~L~~eGlv~~~~ 71 (241)
T PRK03837 34 GDQLPSERELMAFFGV----GRPAVREALQALKRKGLVQISH 71 (241)
T ss_pred CCCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEec
Confidence 3577 89999999999 9999999999999999999873
No 497
>PRK09273 hypothetical protein; Provisional
Probab=53.86 E-value=31 Score=29.36 Aligned_cols=41 Identities=15% Similarity=0.019 Sum_probs=31.4
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC
Q 035738 192 KQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH 232 (333)
Q Consensus 192 ~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~ 232 (333)
....-++||||.-..-.+.++|+++.-.+--|.....++++
T Consensus 64 ~d~GIliCGTGiG~siAANK~pGIraalc~d~~sA~lar~h 104 (211)
T PRK09273 64 VDFVVTGCGTGQGAMLALNSFPGVVCGYCIDPTDAYLFAQI 104 (211)
T ss_pred CCEEEEEcCcHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHh
Confidence 34566899999999999999999998666555555555554
No 498
>PRK11642 exoribonuclease R; Provisional
Probab=53.82 E-value=17 Score=37.91 Aligned_cols=49 Identities=20% Similarity=0.227 Sum_probs=37.7
Q ss_pred ChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 36 GIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 36 glfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
.|++.|.+.+ .|.+..+|+++++++.......+.+.|+.|...|.+.+.
T Consensus 23 ~Il~~l~~~~--~~~~~~~L~~~l~l~~~~~~~~l~~~L~~L~~~g~l~~~ 71 (813)
T PRK11642 23 FILEHLTKRE--KPASREELAVELNIEGEEQLEALRRRLRAMERDGQLVFT 71 (813)
T ss_pred HHHHHHHhcC--CCCCHHHHHHHhCCCChHHHHHHHHHHHHHHHCCCEEEc
Confidence 3667776533 599999999999993211235699999999999999875
No 499
>PRK13558 bacterio-opsin activator; Provisional
Probab=53.00 E-value=12 Score=37.76 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHH
Q 035738 24 VLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLL 77 (333)
Q Consensus 24 ~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L 77 (333)
-+-.+|.+|++.|-|+. +. ..|.+|||+.+|+ .+.-+.+.||..
T Consensus 611 ~q~e~l~~a~~~gyf~~-pr-----~~~~~e~a~~l~i----s~~t~~~~lr~a 654 (665)
T PRK13558 611 RQLTALQKAYVSGYFEW-PR-----RVEGEELAESMGI----SRSTFHQHLRAA 654 (665)
T ss_pred HHHHHHHHHHHcCCCCC-Cc-----cCCHHHHHHHhCC----CHHHHHHHHHHH
Confidence 45679999999999998 44 6899999999999 777777777654
No 500
>COG4901 Ribosomal protein S25 [Translation, ribosomal structure and biogenesis]
Probab=52.95 E-value=15 Score=27.26 Aligned_cols=49 Identities=18% Similarity=0.204 Sum_probs=38.3
Q ss_pred HhChhhHhhhcCC-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 34 ELGIFEIIDKAGP-GAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 34 ~lglfd~L~~~~~-~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
+-.+++.+.+.=+ -.-+|+-.||.+.|+ +-...+..||-|.+.|++...
T Consensus 43 dee~~~ki~KEV~~~r~VTpy~la~r~gI----~~SvAr~vLR~LeeeGvv~lv 92 (107)
T COG4901 43 DEELLDKIRKEVPRERVVTPYVLASRYGI----NGSVARIVLRHLEEEGVVQLV 92 (107)
T ss_pred cHHHHHHHHHhcccceeecHHHHHHHhcc----chHHHHHHHHHHHhCCceeee
Confidence 3345555554211 136899999999999 899999999999999999976
Done!