Query 035738
Match_columns 333
No_of_seqs 151 out of 1765
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 09:39:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035738.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035738hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a6d_A Hydroxyindole O-methylt 100.0 6E-54 2.1E-58 396.7 25.9 312 8-333 4-345 (353)
2 3p9c_A Caffeic acid O-methyltr 100.0 1.8E-51 6.3E-56 381.6 33.2 325 5-333 13-364 (364)
3 3reo_A (ISO)eugenol O-methyltr 100.0 4.7E-51 1.6E-55 379.5 32.1 328 6-333 15-366 (368)
4 3lst_A CALO1 methyltransferase 100.0 9E-47 3.1E-51 348.4 30.0 305 8-333 18-347 (348)
5 3gwz_A MMCR; methyltransferase 100.0 9.8E-47 3.4E-51 350.7 25.0 306 7-333 33-368 (369)
6 1fp1_D Isoliquiritigenin 2'-O- 100.0 1.2E-45 4.1E-50 343.9 27.5 325 8-333 18-372 (372)
7 1zg3_A Isoflavanone 4'-O-methy 100.0 1.6E-45 5.4E-50 341.4 26.0 320 8-333 6-358 (358)
8 3i53_A O-methyltransferase; CO 100.0 4.1E-46 1.4E-50 341.9 21.8 295 15-333 8-331 (332)
9 1fp2_A Isoflavone O-methyltran 100.0 4E-45 1.4E-49 337.9 27.6 318 6-333 10-352 (352)
10 2ip2_A Probable phenazine-spec 100.0 6.6E-45 2.3E-49 334.1 26.7 299 11-333 7-333 (334)
11 3dp7_A SAM-dependent methyltra 100.0 1.3E-42 4.6E-47 322.2 19.4 306 7-333 10-354 (363)
12 1qzz_A RDMB, aclacinomycin-10- 100.0 3.6E-42 1.2E-46 320.6 20.7 305 9-333 13-355 (374)
13 1tw3_A COMT, carminomycin 4-O- 100.0 2.1E-41 7.1E-46 313.9 22.4 303 11-333 18-355 (360)
14 3mcz_A O-methyltransferase; ad 100.0 4.3E-41 1.5E-45 310.9 22.7 302 2-333 14-348 (352)
15 2r3s_A Uncharacterized protein 100.0 6.9E-41 2.4E-45 307.3 23.6 294 14-332 8-333 (335)
16 1x19_A CRTF-related protein; m 100.0 1.7E-40 5.7E-45 307.8 25.1 295 6-333 24-358 (359)
17 4gek_A TRNA (CMO5U34)-methyltr 99.7 4.9E-17 1.7E-21 143.3 11.7 144 188-333 68-256 (261)
18 3dtn_A Putative methyltransfer 99.6 1.4E-15 4.8E-20 131.5 13.7 153 179-332 33-224 (234)
19 3dh0_A SAM dependent methyltra 99.5 1.5E-14 5E-19 123.7 9.7 135 179-333 27-192 (219)
20 3hnr_A Probable methyltransfer 99.5 3.7E-14 1.3E-18 121.3 9.8 148 180-332 36-210 (220)
21 3ou2_A SAM-dependent methyltra 99.5 6.9E-14 2.4E-18 119.2 11.5 142 179-325 35-208 (218)
22 1ve3_A Hypothetical protein PH 99.5 7.5E-15 2.6E-19 126.1 4.9 141 190-333 38-226 (227)
23 3dlc_A Putative S-adenosyl-L-m 99.5 4.1E-15 1.4E-19 126.8 2.9 143 179-330 34-211 (219)
24 3dli_A Methyltransferase; PSI- 99.5 2.9E-13 9.9E-18 117.5 14.0 132 179-323 30-185 (240)
25 3ujc_A Phosphoethanolamine N-m 99.5 1.2E-13 4E-18 121.4 11.5 136 178-323 44-207 (266)
26 3hem_A Cyclopropane-fatty-acyl 99.5 1.4E-13 4.7E-18 123.7 11.1 145 179-325 62-246 (302)
27 1kpg_A CFA synthase;, cyclopro 99.5 3.4E-13 1.2E-17 120.2 13.1 143 179-323 54-229 (287)
28 1vl5_A Unknown conserved prote 99.5 8.4E-14 2.9E-18 122.3 8.5 135 177-322 25-190 (260)
29 1xtp_A LMAJ004091AAA; SGPP, st 99.4 9.3E-14 3.2E-18 121.4 7.3 129 179-323 83-239 (254)
30 3bus_A REBM, methyltransferase 99.4 4.5E-13 1.6E-17 118.4 10.7 137 178-323 50-217 (273)
31 2fk8_A Methoxy mycolic acid sy 99.4 9.3E-13 3.2E-17 119.2 12.8 144 178-323 79-255 (318)
32 2qm3_A Predicted methyltransfe 99.4 3.4E-12 1.2E-16 118.1 16.6 198 36-269 47-279 (373)
33 3pfg_A N-methyltransferase; N, 99.4 2E-13 6.7E-18 120.2 7.2 143 189-333 49-248 (263)
34 1xxl_A YCGJ protein; structura 99.4 3.7E-13 1.3E-17 116.8 8.8 133 179-322 11-174 (239)
35 2o57_A Putative sarcosine dime 99.4 8.6E-13 2.9E-17 118.1 11.4 134 179-323 68-235 (297)
36 3vc1_A Geranyl diphosphate 2-C 99.4 1.4E-12 4.7E-17 117.8 12.7 143 170-323 97-270 (312)
37 3mgg_A Methyltransferase; NYSG 99.4 2E-13 6.7E-18 121.0 6.9 133 188-322 35-198 (276)
38 3i9f_A Putative type 11 methyl 99.4 1.9E-13 6.4E-18 112.1 5.5 126 183-332 11-158 (170)
39 3ege_A Putative methyltransfer 99.4 2.1E-12 7.2E-17 113.6 12.6 131 179-322 24-178 (261)
40 1nkv_A Hypothetical protein YJ 99.4 5.6E-13 1.9E-17 116.6 8.6 132 179-322 26-187 (256)
41 3e23_A Uncharacterized protein 99.4 7.4E-13 2.5E-17 112.5 8.7 118 188-322 41-182 (211)
42 3bxo_A N,N-dimethyltransferase 99.4 2.2E-13 7.4E-18 117.8 5.4 143 189-333 39-238 (239)
43 3h2b_A SAM-dependent methyltra 99.4 4.9E-13 1.7E-17 112.8 7.3 123 191-329 42-190 (203)
44 3f4k_A Putative methyltransfer 99.4 1.2E-12 3.9E-17 114.6 9.6 131 180-323 36-197 (257)
45 3g2m_A PCZA361.24; SAM-depende 99.4 4.3E-13 1.5E-17 120.3 6.5 152 177-332 71-290 (299)
46 2ex4_A Adrenal gland protein A 99.4 4.9E-13 1.7E-17 116.1 6.5 118 190-323 79-226 (241)
47 3e8s_A Putative SAM dependent 99.4 1.3E-12 4.4E-17 111.8 8.6 133 180-321 43-208 (227)
48 3bkw_A MLL3908 protein, S-aden 99.4 3.3E-12 1.1E-16 110.6 11.2 139 180-322 34-214 (243)
49 3kkz_A Uncharacterized protein 99.4 1.3E-12 4.3E-17 115.3 8.1 131 180-323 36-197 (267)
50 3ocj_A Putative exported prote 99.3 1.4E-12 4.8E-17 117.4 8.4 146 188-333 116-303 (305)
51 3gu3_A Methyltransferase; alph 99.3 1E-12 3.4E-17 117.1 7.3 140 180-321 12-189 (284)
52 2p7i_A Hypothetical protein; p 99.3 2.1E-12 7E-17 112.1 9.0 128 189-322 41-199 (250)
53 3l8d_A Methyltransferase; stru 99.3 4.7E-12 1.6E-16 109.6 11.2 122 189-322 52-200 (242)
54 2qe6_A Uncharacterized protein 99.3 2.8E-12 9.7E-17 113.6 9.9 120 190-318 77-238 (274)
55 1pjz_A Thiopurine S-methyltran 99.3 3E-12 1E-16 108.3 9.1 121 181-323 14-177 (203)
56 4fsd_A Arsenic methyltransfera 99.3 3.1E-12 1.1E-16 118.9 9.7 124 189-321 82-250 (383)
57 4e2x_A TCAB9; kijanose, tetron 99.3 1.7E-12 5.8E-17 121.9 7.6 132 177-323 95-254 (416)
58 4htf_A S-adenosylmethionine-de 99.3 2.6E-12 9E-17 114.3 7.6 135 180-323 60-233 (285)
59 3jwg_A HEN1, methyltransferase 99.3 6.8E-12 2.3E-16 107.1 9.6 123 189-320 28-189 (219)
60 3lcc_A Putative methyl chlorid 99.3 3.5E-12 1.2E-16 110.2 7.7 111 192-323 68-208 (235)
61 3ccf_A Cyclopropane-fatty-acyl 99.3 3.3E-12 1.1E-16 113.4 7.6 133 180-322 48-210 (279)
62 3sm3_A SAM-dependent methyltra 99.3 6.1E-12 2.1E-16 108.2 8.6 130 188-322 28-207 (235)
63 3jwh_A HEN1; methyltransferase 99.3 3.8E-12 1.3E-16 108.6 7.1 122 188-317 27-187 (217)
64 3g5l_A Putative S-adenosylmeth 99.3 2.9E-12 1E-16 111.9 6.5 140 179-322 34-216 (253)
65 2p35_A Trans-aconitate 2-methy 99.3 1.9E-12 6.4E-17 113.3 4.8 134 180-316 24-184 (259)
66 3cc8_A Putative methyltransfer 99.3 2E-12 6.9E-17 110.8 4.9 137 178-323 22-186 (230)
67 2aot_A HMT, histamine N-methyl 99.3 1.6E-11 5.3E-16 109.8 9.8 120 189-319 51-218 (292)
68 3bkx_A SAM-dependent methyltra 99.3 1.9E-11 6.4E-16 108.0 10.1 139 180-322 34-219 (275)
69 3cgg_A SAM-dependent methyltra 99.3 1.9E-11 6.5E-16 101.8 9.4 112 180-322 38-175 (195)
70 3ggd_A SAM-dependent methyltra 99.2 6.6E-12 2.3E-16 109.1 6.5 129 188-321 54-218 (245)
71 2xvm_A Tellurite resistance pr 99.2 3E-11 1E-15 101.1 9.7 122 180-322 23-173 (199)
72 2zfu_A Nucleomethylin, cerebra 99.2 4.6E-11 1.6E-15 101.6 10.8 120 179-333 56-190 (215)
73 3d2l_A SAM-dependent methyltra 99.2 2.9E-11 1E-15 104.6 8.7 75 189-266 32-136 (243)
74 3g07_A 7SK snRNA methylphospha 99.2 5.2E-12 1.8E-16 113.0 3.6 41 190-230 46-87 (292)
75 2yqz_A Hypothetical protein TT 99.2 1.7E-11 5.8E-16 107.4 6.5 127 188-321 37-195 (263)
76 1fbn_A MJ fibrillarin homologu 99.2 1.1E-10 3.9E-15 100.4 11.3 125 188-332 72-226 (230)
77 1vlm_A SAM-dependent methyltra 99.2 2.6E-11 8.7E-16 103.6 7.1 117 191-322 48-188 (219)
78 3e05_A Precorrin-6Y C5,15-meth 99.2 2.2E-10 7.4E-15 96.6 12.0 109 180-319 31-164 (204)
79 3grz_A L11 mtase, ribosomal pr 99.2 9E-11 3.1E-15 99.1 9.5 115 189-333 59-196 (205)
80 4df3_A Fibrillarin-like rRNA/T 99.2 7.2E-11 2.4E-15 101.4 8.6 116 188-323 75-218 (233)
81 1y8c_A S-adenosylmethionine-de 99.2 5.6E-11 1.9E-15 102.8 7.9 130 190-322 37-225 (246)
82 3p2e_A 16S rRNA methylase; met 99.2 1.3E-10 4.3E-15 99.9 9.9 126 189-323 23-186 (225)
83 3mq2_A 16S rRNA methyltransfer 99.2 3.1E-10 1.1E-14 96.7 12.2 123 188-323 25-185 (218)
84 4hg2_A Methyltransferase type 99.1 3.8E-11 1.3E-15 105.3 6.4 77 190-271 39-139 (257)
85 3giw_A Protein of unknown func 99.1 1.8E-10 6.2E-15 100.8 9.8 121 190-318 78-243 (277)
86 2p8j_A S-adenosylmethionine-de 99.1 2E-11 7E-16 103.2 3.3 131 188-319 21-180 (209)
87 3orh_A Guanidinoacetate N-meth 99.1 1.5E-11 5.3E-16 106.4 2.2 115 189-319 59-207 (236)
88 2a14_A Indolethylamine N-methy 99.1 5.3E-11 1.8E-15 104.7 4.3 120 188-322 53-238 (263)
89 3thr_A Glycine N-methyltransfe 99.1 4.1E-11 1.4E-15 106.8 3.2 80 188-269 55-177 (293)
90 2kw5_A SLR1183 protein; struct 99.1 3.9E-10 1.3E-14 94.7 8.8 113 193-322 32-171 (202)
91 2nxc_A L11 mtase, ribosomal pr 99.1 8.3E-10 2.8E-14 96.6 11.1 110 188-328 118-250 (254)
92 2gb4_A Thiopurine S-methyltran 99.1 2.6E-10 9E-15 99.6 7.5 112 189-321 67-226 (252)
93 1ri5_A MRNA capping enzyme; me 99.0 6.9E-11 2.4E-15 105.4 3.5 135 188-323 62-251 (298)
94 3opn_A Putative hemolysin; str 99.0 2.8E-10 9.7E-15 98.1 7.0 131 180-322 27-184 (232)
95 1wzn_A SAM-dependent methyltra 99.0 1.7E-09 5.7E-14 94.1 11.5 86 180-268 32-146 (252)
96 4dzr_A Protein-(glutamine-N5) 99.0 9.1E-10 3.1E-14 93.0 9.5 116 180-324 20-194 (215)
97 2g72_A Phenylethanolamine N-me 99.0 7.3E-11 2.5E-15 105.2 2.7 118 190-322 71-256 (289)
98 3g5t_A Trans-aconitate 3-methy 99.0 5.7E-10 2E-14 99.9 8.3 122 188-315 34-197 (299)
99 3mb5_A SAM-dependent methyltra 99.0 4.4E-10 1.5E-14 98.1 6.8 112 179-322 83-222 (255)
100 2i62_A Nicotinamide N-methyltr 99.0 2.5E-10 8.6E-15 100.0 5.0 121 188-323 54-240 (265)
101 3m70_A Tellurite resistance pr 99.0 5.5E-10 1.9E-14 99.2 7.2 120 180-320 111-258 (286)
102 3hp7_A Hemolysin, putative; st 99.0 2.7E-09 9.2E-14 94.5 11.2 133 180-323 75-233 (291)
103 3ofk_A Nodulation protein S; N 99.0 1.1E-10 3.7E-15 99.3 1.2 80 188-269 49-156 (216)
104 1dus_A MJ0882; hypothetical pr 99.0 2.8E-09 9.5E-14 88.4 9.8 121 180-333 43-193 (194)
105 1yb2_A Hypothetical protein TA 98.9 3.9E-10 1.3E-14 99.8 4.2 110 180-321 101-236 (275)
106 1nt2_A Fibrillarin-like PRE-rR 98.9 5.1E-09 1.7E-13 88.8 10.9 80 188-267 55-161 (210)
107 1g8a_A Fibrillarin-like PRE-rR 98.9 7.5E-09 2.6E-13 88.6 12.0 124 188-332 71-225 (227)
108 3q87_B N6 adenine specific DNA 98.9 8.7E-09 3E-13 84.3 11.7 101 190-323 23-150 (170)
109 1yzh_A TRNA (guanine-N(7)-)-me 98.9 2.5E-09 8.7E-14 90.8 8.5 78 190-267 41-156 (214)
110 2ipx_A RRNA 2'-O-methyltransfe 98.9 1E-09 3.4E-14 94.6 5.7 116 188-323 75-218 (233)
111 2b3t_A Protein methyltransfera 98.9 1.3E-08 4.3E-13 90.0 12.8 121 180-332 101-274 (276)
112 3id6_C Fibrillarin-like rRNA/T 98.9 6.9E-09 2.4E-13 89.1 10.4 116 188-323 74-217 (232)
113 1zx0_A Guanidinoacetate N-meth 98.9 5.2E-10 1.8E-14 96.6 3.2 80 189-269 59-172 (236)
114 2gs9_A Hypothetical protein TT 98.9 2.6E-09 8.9E-14 90.3 7.0 112 190-320 36-176 (211)
115 3uwp_A Histone-lysine N-methyl 98.9 6.4E-09 2.2E-13 95.7 9.8 96 178-275 162-296 (438)
116 3iv6_A Putative Zn-dependent a 98.9 3.2E-09 1.1E-13 92.8 7.4 87 179-269 35-150 (261)
117 3hm2_A Precorrin-6Y C5,15-meth 98.9 4.7E-09 1.6E-13 86.0 7.8 86 181-268 17-128 (178)
118 3tfw_A Putative O-methyltransf 98.9 6.9E-09 2.4E-13 90.3 9.3 84 188-271 61-174 (248)
119 3njr_A Precorrin-6Y methylase; 98.9 1E-08 3.4E-13 86.6 9.9 106 181-320 47-178 (204)
120 3duw_A OMT, O-methyltransferas 98.9 8.7E-09 3E-13 87.9 9.6 84 188-271 56-171 (223)
121 3mti_A RRNA methylase; SAM-dep 98.9 2.6E-09 8.9E-14 88.4 6.1 113 188-323 20-170 (185)
122 2vdw_A Vaccinia virus capping 98.9 1.8E-09 6.1E-14 96.9 5.4 132 190-322 48-246 (302)
123 2pwy_A TRNA (adenine-N(1)-)-me 98.9 3.9E-09 1.3E-13 92.0 7.3 111 179-321 86-223 (258)
124 2fca_A TRNA (guanine-N(7)-)-me 98.8 4.3E-09 1.5E-13 89.5 7.3 78 190-267 38-153 (213)
125 1l3i_A Precorrin-6Y methyltran 98.8 1.7E-08 5.9E-13 83.4 9.8 104 181-316 25-154 (192)
126 1o54_A SAM-dependent O-methylt 98.8 6.6E-09 2.2E-13 91.9 7.4 111 179-321 102-238 (277)
127 3fzg_A 16S rRNA methylase; met 98.8 3.4E-09 1.2E-13 87.3 4.8 115 189-325 48-190 (200)
128 3ckk_A TRNA (guanine-N(7)-)-me 98.8 7E-09 2.4E-13 89.6 7.0 80 189-268 45-169 (235)
129 3dxy_A TRNA (guanine-N(7)-)-me 98.8 3.9E-09 1.3E-13 90.1 5.0 79 190-268 34-151 (218)
130 3bgv_A MRNA CAP guanine-N7 met 98.8 4.7E-09 1.6E-13 94.5 5.7 133 189-322 33-232 (313)
131 3fpf_A Mtnas, putative unchara 98.8 1.3E-08 4.4E-13 90.1 8.1 81 188-268 120-223 (298)
132 3bwc_A Spermidine synthase; SA 98.8 2.1E-08 7E-13 90.0 9.5 109 189-322 94-240 (304)
133 3htx_A HEN1; HEN1, small RNA m 98.7 1.5E-08 5.2E-13 100.1 8.4 82 188-270 719-837 (950)
134 3m33_A Uncharacterized protein 98.7 3.6E-09 1.2E-13 90.7 3.6 99 189-322 47-167 (226)
135 1xdz_A Methyltransferase GIDB; 98.7 1.7E-08 5.7E-13 87.3 7.8 106 188-322 68-202 (240)
136 2vdv_E TRNA (guanine-N(7)-)-me 98.7 1.2E-08 3.9E-13 88.7 6.7 80 188-267 47-173 (246)
137 3r3h_A O-methyltransferase, SA 98.7 2.2E-08 7.5E-13 86.8 8.3 83 189-271 59-174 (242)
138 3g89_A Ribosomal RNA small sub 98.7 1.3E-08 4.5E-13 88.6 6.6 106 188-322 78-212 (249)
139 3kr9_A SAM-dependent methyltra 98.7 5E-08 1.7E-12 83.2 9.5 114 188-332 13-156 (225)
140 3eey_A Putative rRNA methylase 98.7 1E-08 3.5E-13 85.7 4.9 82 188-269 20-141 (197)
141 3tr6_A O-methyltransferase; ce 98.7 1.1E-08 3.7E-13 87.4 5.1 83 189-271 63-178 (225)
142 2yxd_A Probable cobalt-precorr 98.7 8.4E-08 2.9E-12 78.6 10.3 105 180-319 26-154 (183)
143 3lec_A NADB-rossmann superfami 98.7 5.7E-08 1.9E-12 83.0 9.4 114 188-332 19-162 (230)
144 3evz_A Methyltransferase; NYSG 98.7 5E-08 1.7E-12 83.5 9.2 108 188-324 53-208 (230)
145 2frn_A Hypothetical protein PH 98.7 2.7E-08 9.3E-13 88.1 7.7 105 189-318 124-253 (278)
146 3lpm_A Putative methyltransfer 98.7 8.1E-08 2.8E-12 84.0 10.3 115 188-333 46-218 (259)
147 2pjd_A Ribosomal RNA small sub 98.7 6.4E-09 2.2E-13 95.0 2.5 89 179-268 186-304 (343)
148 4dcm_A Ribosomal RNA large sub 98.6 4E-08 1.4E-12 90.6 7.2 88 180-268 213-335 (375)
149 2pxx_A Uncharacterized protein 98.6 1.2E-08 4.2E-13 86.0 3.4 81 189-270 41-162 (215)
150 3gnl_A Uncharacterized protein 98.6 9.2E-08 3.1E-12 82.4 8.7 114 188-332 19-162 (244)
151 2b25_A Hypothetical protein; s 98.6 1.2E-08 4.1E-13 92.8 3.2 89 179-270 95-222 (336)
152 1u2z_A Histone-lysine N-methyl 98.6 8.7E-08 3E-12 89.5 9.0 94 179-273 232-365 (433)
153 3ntv_A MW1564 protein; rossman 98.6 1.7E-08 5.8E-13 86.9 3.9 83 188-270 69-179 (232)
154 2bm8_A Cephalosporin hydroxyla 98.6 8.9E-08 3E-12 82.6 7.7 79 190-268 81-188 (236)
155 3dr5_A Putative O-methyltransf 98.6 7.3E-08 2.5E-12 82.3 6.4 80 191-270 57-166 (221)
156 1jsx_A Glucose-inhibited divis 98.6 3.2E-08 1.1E-12 83.3 4.1 76 190-267 65-165 (207)
157 1i9g_A Hypothetical protein RV 98.6 1.2E-07 4.1E-12 83.7 7.8 87 179-268 89-204 (280)
158 1af7_A Chemotaxis receptor met 98.5 2.2E-08 7.6E-13 88.2 2.7 76 190-265 105-250 (274)
159 3gjy_A Spermidine synthase; AP 98.5 4.8E-08 1.7E-12 87.5 4.7 78 191-268 90-201 (317)
160 3p9n_A Possible methyltransfer 98.5 2E-07 6.8E-12 77.3 8.2 82 189-271 43-157 (189)
161 2esr_A Methyltransferase; stru 98.5 1.8E-07 6E-12 76.6 7.5 82 188-270 29-141 (177)
162 2gpy_A O-methyltransferase; st 98.5 5.2E-08 1.8E-12 83.7 4.3 81 189-269 53-162 (233)
163 1sui_A Caffeoyl-COA O-methyltr 98.5 1.2E-07 4.1E-12 82.4 6.6 82 189-270 78-193 (247)
164 3c3p_A Methyltransferase; NP_9 98.5 4.2E-08 1.4E-12 82.9 3.4 81 190-270 56-163 (210)
165 3adn_A Spermidine synthase; am 98.5 9.8E-08 3.4E-12 85.1 5.8 80 189-268 82-199 (294)
166 2avd_A Catechol-O-methyltransf 98.5 8.4E-08 2.9E-12 82.0 5.1 83 188-270 67-182 (229)
167 2avn_A Ubiquinone/menaquinone 98.5 4.2E-08 1.4E-12 85.8 2.6 77 190-270 54-155 (260)
168 2h00_A Methyltransferase 10 do 98.5 6.7E-09 2.3E-13 90.6 -2.8 125 190-323 65-239 (254)
169 2hnk_A SAM-dependent O-methylt 98.5 3.7E-07 1.3E-11 78.7 7.9 83 188-270 58-184 (239)
170 3c3y_A Pfomt, O-methyltransfer 98.4 2.3E-07 7.9E-12 80.0 6.4 81 189-269 69-183 (237)
171 3lcv_B Sisomicin-gentamicin re 98.4 3.7E-08 1.3E-12 84.9 0.9 113 189-324 131-273 (281)
172 1p91_A Ribosomal RNA large sub 98.4 9.1E-08 3.1E-12 83.9 3.3 78 189-270 84-181 (269)
173 1ej0_A FTSJ; methyltransferase 98.4 7.4E-07 2.5E-11 72.3 8.2 90 180-269 12-138 (180)
174 2nyu_A Putative ribosomal RNA 98.4 7.3E-07 2.5E-11 74.1 8.3 88 181-268 13-146 (196)
175 3lbf_A Protein-L-isoaspartate 98.4 2.5E-07 8.4E-12 78.0 5.4 79 180-269 68-176 (210)
176 3u81_A Catechol O-methyltransf 98.4 3.2E-07 1.1E-11 78.1 6.0 80 189-269 57-172 (221)
177 2yvl_A TRMI protein, hypotheti 98.4 7.3E-07 2.5E-11 77.0 8.3 85 180-269 82-192 (248)
178 3dou_A Ribosomal RNA large sub 98.4 7.3E-07 2.5E-11 74.2 7.9 89 178-268 13-140 (191)
179 3cbg_A O-methyltransferase; cy 98.4 2.1E-07 7.2E-12 80.0 4.7 82 190-271 72-186 (232)
180 2plw_A Ribosomal RNA methyltra 98.4 9.1E-07 3.1E-11 73.8 8.5 45 180-224 12-58 (201)
181 2yxe_A Protein-L-isoaspartate 98.4 2.6E-07 8.9E-12 78.1 5.1 80 180-268 68-178 (215)
182 1inl_A Spermidine synthase; be 98.4 1.7E-07 6E-12 83.6 3.8 77 190-266 90-204 (296)
183 2ld4_A Anamorsin; methyltransf 98.4 2.7E-06 9.2E-11 69.5 10.5 105 188-314 10-128 (176)
184 2fhp_A Methylase, putative; al 98.4 4.3E-07 1.5E-11 74.8 5.6 82 188-270 42-157 (187)
185 2fyt_A Protein arginine N-meth 98.4 7.1E-07 2.4E-11 81.2 7.6 82 181-264 56-168 (340)
186 3tma_A Methyltransferase; thum 98.3 1.1E-06 3.6E-11 80.5 8.7 90 178-268 192-318 (354)
187 1ixk_A Methyltransferase; open 98.3 1.2E-06 4E-11 78.9 8.7 82 188-269 116-248 (315)
188 1uir_A Polyamine aminopropyltr 98.3 2.8E-07 9.6E-12 82.9 4.5 80 189-268 76-196 (314)
189 1o9g_A RRNA methyltransferase; 98.3 6.5E-07 2.2E-11 77.7 6.6 50 180-230 42-94 (250)
190 2y1w_A Histone-arginine methyl 98.3 1.9E-07 6.6E-12 85.3 3.1 86 180-267 41-155 (348)
191 3b3j_A Histone-arginine methyl 98.3 3.3E-07 1.1E-11 87.2 4.8 86 178-265 147-261 (480)
192 1iy9_A Spermidine synthase; ro 98.3 2.8E-07 9.6E-12 81.3 4.0 78 190-267 75-189 (275)
193 2cmg_A Spermidine synthase; tr 98.3 7.9E-07 2.7E-11 77.8 6.6 75 189-267 71-171 (262)
194 3sso_A Methyltransferase; macr 98.3 4.8E-07 1.6E-11 83.1 5.3 79 189-269 215-326 (419)
195 1dl5_A Protein-L-isoaspartate 98.3 5.3E-07 1.8E-11 81.3 5.3 81 180-269 66-177 (317)
196 2o07_A Spermidine synthase; st 98.3 4.9E-07 1.7E-11 80.9 5.0 80 189-268 94-210 (304)
197 1jg1_A PIMT;, protein-L-isoasp 98.3 4.4E-07 1.5E-11 78.0 4.4 86 178-268 80-190 (235)
198 1vbf_A 231AA long hypothetical 98.3 7.5E-07 2.6E-11 76.1 5.6 80 179-269 60-167 (231)
199 1xj5_A Spermidine synthase 1; 98.3 4.4E-07 1.5E-11 82.3 4.0 79 188-266 118-234 (334)
200 2ozv_A Hypothetical protein AT 98.3 7.5E-07 2.5E-11 77.9 5.4 43 188-230 34-77 (260)
201 1nv8_A HEMK protein; class I a 98.3 1.9E-06 6.4E-11 76.4 7.9 41 190-231 123-164 (284)
202 3a27_A TYW2, uncharacterized p 98.3 4.5E-07 1.5E-11 79.9 3.7 83 188-271 117-223 (272)
203 2b2c_A Spermidine synthase; be 98.2 7.6E-07 2.6E-11 80.0 4.6 78 190-267 108-222 (314)
204 2i7c_A Spermidine synthase; tr 98.2 6.7E-07 2.3E-11 79.2 4.2 79 189-267 77-192 (283)
205 1mjf_A Spermidine synthase; sp 98.2 1.2E-06 4.3E-11 77.4 5.9 77 190-267 75-193 (281)
206 3r0q_C Probable protein argini 98.2 9.5E-07 3.3E-11 81.5 5.2 81 188-269 61-171 (376)
207 3dmg_A Probable ribosomal RNA 98.2 6.4E-07 2.2E-11 82.7 3.9 77 190-268 233-341 (381)
208 1ws6_A Methyltransferase; stru 98.2 7.3E-07 2.5E-11 72.2 3.8 78 190-270 41-150 (171)
209 2pt6_A Spermidine synthase; tr 98.2 6.8E-07 2.3E-11 80.7 3.8 78 190-267 116-230 (321)
210 3q7e_A Protein arginine N-meth 98.2 6.6E-07 2.3E-11 81.7 3.8 76 189-265 65-171 (349)
211 2fpo_A Methylase YHHF; structu 98.2 1.5E-06 5.2E-11 72.9 5.4 80 190-270 54-163 (202)
212 2wa2_A Non-structural protein 98.1 5.2E-06 1.8E-10 73.2 7.8 87 179-269 72-195 (276)
213 3ajd_A Putative methyltransfer 98.1 2.7E-06 9.1E-11 75.0 5.9 83 188-270 81-214 (274)
214 2ift_A Putative methylase HI07 98.1 1.8E-06 6.3E-11 72.3 4.6 80 190-270 53-166 (201)
215 2oxt_A Nucleoside-2'-O-methylt 98.1 5.8E-06 2E-10 72.4 7.9 79 188-269 72-187 (265)
216 1g6q_1 HnRNP arginine N-methyl 98.1 1.4E-06 4.9E-11 78.8 4.2 76 189-265 37-143 (328)
217 1i1n_A Protein-L-isoaspartate 98.1 2.1E-06 7.3E-11 73.0 4.9 78 188-268 75-183 (226)
218 2p41_A Type II methyltransfera 98.1 1.1E-05 3.9E-10 72.0 9.6 77 188-267 80-191 (305)
219 3k6r_A Putative transferase PH 98.1 5.1E-06 1.8E-10 73.1 7.2 105 188-317 123-252 (278)
220 3bzb_A Uncharacterized protein 98.1 3.6E-06 1.2E-10 74.4 5.9 76 188-266 77-204 (281)
221 3frh_A 16S rRNA methylase; met 98.1 1.7E-06 5.8E-11 73.9 3.2 76 189-268 104-207 (253)
222 3tm4_A TRNA (guanine N2-)-meth 98.0 2.2E-05 7.6E-10 72.2 10.4 45 188-232 215-260 (373)
223 2pbf_A Protein-L-isoaspartate 98.0 3.2E-06 1.1E-10 72.0 4.4 82 188-269 78-195 (227)
224 2igt_A SAM dependent methyltra 98.0 1.3E-05 4.6E-10 72.5 8.3 78 190-269 153-274 (332)
225 1r18_A Protein-L-isoaspartate( 98.0 2.2E-06 7.5E-11 73.1 2.5 78 188-268 82-195 (227)
226 4azs_A Methyltransferase WBDD; 98.0 3.5E-06 1.2E-10 82.0 4.0 81 189-271 65-177 (569)
227 3gdh_A Trimethylguanosine synt 98.0 2.4E-07 8.3E-12 79.8 -3.8 40 190-231 78-118 (241)
228 2ih2_A Modification methylase 98.0 2.3E-05 7.9E-10 73.1 9.3 87 181-268 31-165 (421)
229 1zq9_A Probable dimethyladenos 97.9 3.3E-06 1.1E-10 74.9 2.5 49 179-230 18-67 (285)
230 2xyq_A Putative 2'-O-methyl tr 97.9 2.2E-05 7.5E-10 69.5 7.0 101 188-320 61-195 (290)
231 4dmg_A Putative uncharacterize 97.8 2.3E-05 7.7E-10 72.6 6.8 78 190-269 214-328 (393)
232 1wxx_A TT1595, hypothetical pr 97.8 1.3E-05 4.3E-10 74.1 4.9 77 190-268 209-326 (382)
233 3b5i_A S-adenosyl-L-methionine 97.8 6.8E-05 2.3E-09 68.6 9.5 75 248-322 206-298 (374)
234 2yxl_A PH0851 protein, 450AA l 97.8 1.4E-05 4.9E-10 75.4 5.0 83 188-270 257-392 (450)
235 2as0_A Hypothetical protein PH 97.8 2E-05 6.7E-10 73.2 5.5 78 190-268 217-336 (396)
236 1ne2_A Hypothetical protein TA 97.8 1.5E-05 5.1E-10 66.4 4.2 43 188-231 49-92 (200)
237 3m6w_A RRNA methylase; rRNA me 97.8 1.5E-05 5.2E-10 75.1 4.6 81 188-268 99-230 (464)
238 1qam_A ERMC' methyltransferase 97.8 0.00011 3.8E-09 63.4 9.5 50 178-230 19-69 (244)
239 1sqg_A SUN protein, FMU protei 97.8 2.9E-05 9.9E-10 72.8 6.2 83 188-270 244-377 (429)
240 1wy7_A Hypothetical protein PH 97.7 5.6E-05 1.9E-09 63.1 7.1 43 188-231 47-90 (207)
241 2qfm_A Spermine synthase; sper 97.7 2.5E-05 8.7E-10 70.8 5.0 42 189-231 187-229 (364)
242 3m4x_A NOL1/NOP2/SUN family pr 97.7 3.8E-05 1.3E-09 72.2 6.1 81 188-268 103-235 (456)
243 1rjd_A PPM1P, carboxy methyl t 97.7 8.8E-05 3E-09 67.0 7.7 122 189-315 96-281 (334)
244 2f8l_A Hypothetical protein LM 97.7 1.3E-05 4.4E-10 72.9 2.0 81 188-268 128-257 (344)
245 4hc4_A Protein arginine N-meth 97.6 2.2E-05 7.4E-10 72.1 3.1 75 190-265 83-187 (376)
246 3c0k_A UPF0064 protein YCCW; P 97.6 5.1E-05 1.8E-09 70.3 5.7 79 189-268 219-340 (396)
247 2efj_A 3,7-dimethylxanthine me 97.6 5.7E-05 2E-09 69.2 5.7 72 250-321 208-291 (384)
248 3o4f_A Spermidine synthase; am 97.6 3E-05 1E-09 68.4 3.6 82 188-269 81-200 (294)
249 1m6y_A S-adenosyl-methyltransf 97.6 5.6E-05 1.9E-09 67.3 5.3 54 178-232 15-69 (301)
250 2h1r_A Dimethyladenosine trans 97.6 4E-05 1.4E-09 68.3 4.2 49 179-230 32-81 (299)
251 2frx_A Hypothetical protein YE 97.6 0.00011 3.9E-09 69.6 7.3 81 190-270 117-249 (479)
252 3ftd_A Dimethyladenosine trans 97.5 7.1E-05 2.4E-09 64.8 4.9 52 179-232 21-73 (249)
253 2yx1_A Hypothetical protein MJ 97.5 4.5E-05 1.6E-09 69.1 3.8 77 189-269 194-293 (336)
254 2b78_A Hypothetical protein SM 97.5 0.00011 3.7E-09 67.9 5.8 42 189-231 211-253 (385)
255 1m6e_X S-adenosyl-L-methionnin 97.5 0.00044 1.5E-08 62.8 9.4 73 248-320 190-278 (359)
256 3uzu_A Ribosomal RNA small sub 97.5 6.5E-05 2.2E-09 66.2 3.8 51 180-231 33-86 (279)
257 3k0b_A Predicted N6-adenine-sp 97.4 0.00025 8.6E-09 65.6 7.2 90 178-268 190-351 (393)
258 3ldu_A Putative methylase; str 97.4 0.00021 7.3E-09 65.9 6.4 90 178-268 184-345 (385)
259 3iei_A Leucine carboxyl methyl 97.4 0.0011 3.8E-08 59.7 10.9 121 190-322 90-281 (334)
260 3ldg_A Putative uncharacterize 97.4 0.00039 1.3E-08 64.0 7.9 90 178-268 183-344 (384)
261 1qyr_A KSGA, high level kasuga 97.3 0.00016 5.5E-09 62.7 4.7 52 178-232 10-62 (252)
262 1yub_A Ermam, rRNA methyltrans 97.3 9.5E-05 3.3E-09 63.7 3.2 51 179-232 19-70 (245)
263 3fut_A Dimethyladenosine trans 97.3 0.00019 6.4E-09 62.9 4.9 49 179-231 37-86 (271)
264 3evf_A RNA-directed RNA polyme 97.3 0.00071 2.4E-08 58.6 8.4 90 179-270 64-186 (277)
265 3tqs_A Ribosomal RNA small sub 97.3 0.00012 4.2E-09 63.5 3.7 50 179-231 19-69 (255)
266 3v97_A Ribosomal RNA large sub 97.3 0.00026 8.9E-09 70.4 6.4 78 190-268 539-658 (703)
267 1uwv_A 23S rRNA (uracil-5-)-me 97.3 0.00033 1.1E-08 65.7 6.5 50 180-232 277-327 (433)
268 3gru_A Dimethyladenosine trans 97.3 0.0003 1E-08 62.4 5.8 50 179-231 40-90 (295)
269 1qbj_A Protein (double-strande 97.3 0.00035 1.2E-08 49.1 4.7 66 33-105 11-76 (81)
270 2okc_A Type I restriction enzy 97.2 0.00027 9.1E-09 66.6 4.6 89 179-268 161-308 (445)
271 2qy6_A UPF0209 protein YFCK; s 97.1 0.00037 1.3E-08 60.5 4.9 34 190-223 60-106 (257)
272 3gcz_A Polyprotein; flavivirus 97.1 0.00076 2.6E-08 58.5 6.4 91 177-268 78-202 (282)
273 2heo_A Z-DNA binding protein 1 97.1 0.00034 1.2E-08 47.3 3.2 55 34-99 12-66 (67)
274 2dul_A N(2),N(2)-dimethylguano 97.1 0.00027 9.3E-09 64.9 3.6 77 190-267 47-164 (378)
275 2jjq_A Uncharacterized RNA met 97.1 0.0005 1.7E-08 64.2 5.4 40 190-231 290-330 (425)
276 1qgp_A Protein (double strande 97.0 0.00059 2E-08 47.5 3.5 62 32-100 14-75 (77)
277 3b73_A PHIH1 repressor-like pr 97.0 0.00037 1.3E-08 52.1 2.6 63 34-108 15-79 (111)
278 1xmk_A Double-stranded RNA-spe 96.9 0.00068 2.3E-08 47.2 3.6 62 33-104 12-74 (79)
279 3c6k_A Spermine synthase; sper 96.9 0.001 3.4E-08 60.6 5.6 41 190-231 205-246 (381)
280 1y0u_A Arsenical resistance op 96.9 0.00086 3E-08 48.7 4.2 61 28-103 27-87 (96)
281 3eld_A Methyltransferase; flav 96.7 0.0072 2.5E-07 52.8 9.1 89 179-268 71-192 (300)
282 2htj_A P fimbrial regulatory p 96.6 0.0021 7.1E-08 45.1 4.4 45 35-86 3-47 (81)
283 3v97_A Ribosomal RNA large sub 96.5 0.0038 1.3E-07 62.1 7.1 54 178-232 179-275 (703)
284 3pqk_A Biofilm growth-associat 96.5 0.0031 1.1E-07 46.2 4.9 63 28-100 19-81 (102)
285 3mq0_A Transcriptional repress 96.4 0.002 6.7E-08 56.5 3.9 58 34-102 32-89 (275)
286 2ar0_A M.ecoki, type I restric 96.3 0.0028 9.7E-08 61.0 4.7 89 179-268 159-313 (541)
287 3ech_A MEXR, multidrug resista 96.3 0.0093 3.2E-07 46.2 6.9 78 2-86 2-84 (142)
288 2r6z_A UPF0341 protein in RSP 96.3 0.0017 5.9E-08 56.3 2.8 43 188-232 81-131 (258)
289 2jt1_A PEFI protein; solution 96.2 0.0034 1.2E-07 43.5 3.4 45 37-87 9-58 (77)
290 1wg8_A Predicted S-adenosylmet 96.2 0.004 1.4E-07 54.3 4.7 59 178-239 11-72 (285)
291 3jth_A Transcription activator 96.2 0.0026 9E-08 46.2 3.0 51 28-86 19-69 (98)
292 3cuo_A Uncharacterized HTH-typ 96.0 0.0044 1.5E-07 44.8 3.4 51 29-86 21-71 (99)
293 1xn7_A Hypothetical protein YH 96.0 0.0067 2.3E-07 42.1 4.0 43 37-86 7-49 (78)
294 2y75_A HTH-type transcriptiona 96.0 0.01 3.4E-07 45.5 5.4 46 48-100 25-70 (129)
295 1oyi_A Double-stranded RNA-bin 96.0 0.0042 1.4E-07 43.4 2.8 60 33-103 18-77 (82)
296 1u2w_A CADC repressor, cadmium 95.9 0.0056 1.9E-07 46.5 3.7 53 27-86 37-89 (122)
297 3axs_A Probable N(2),N(2)-dime 95.9 0.0062 2.1E-07 56.0 4.7 79 190-268 52-159 (392)
298 3f6o_A Probable transcriptiona 95.9 0.0033 1.1E-07 47.5 2.4 64 27-100 13-76 (118)
299 2hzt_A Putative HTH-type trans 95.9 0.0067 2.3E-07 44.9 3.9 76 13-105 4-81 (107)
300 2xrn_A HTH-type transcriptiona 95.9 0.0042 1.4E-07 53.2 3.2 59 35-103 9-67 (241)
301 2oqg_A Possible transcriptiona 95.9 0.0046 1.6E-07 46.1 3.0 61 32-102 21-81 (114)
302 2k02_A Ferrous iron transport 95.9 0.0064 2.2E-07 43.1 3.5 43 37-86 7-49 (87)
303 3r4k_A Transcriptional regulat 95.9 0.0026 8.9E-08 55.2 1.8 58 35-102 9-66 (260)
304 1r7j_A Conserved hypothetical 95.8 0.0055 1.9E-07 44.4 3.0 48 50-107 21-68 (95)
305 1mkm_A ICLR transcriptional re 95.8 0.0069 2.4E-07 52.1 4.0 57 35-102 11-67 (249)
306 3ua3_A Protein arginine N-meth 95.8 0.015 5.2E-07 56.9 6.7 66 153-225 379-458 (745)
307 1ub9_A Hypothetical protein PH 95.7 0.0051 1.7E-07 44.5 2.6 53 27-86 11-63 (100)
308 4gqb_A Protein arginine N-meth 95.7 0.0046 1.6E-07 60.3 2.8 104 153-263 324-463 (637)
309 3ll7_A Putative methyltransfer 95.7 0.0099 3.4E-07 54.9 4.9 41 190-232 93-134 (410)
310 2jsc_A Transcriptional regulat 95.7 0.0063 2.2E-07 45.9 3.0 51 28-86 17-67 (118)
311 4a5n_A Uncharacterized HTH-typ 95.6 0.0092 3.2E-07 45.9 3.9 79 12-107 15-95 (131)
312 1r1u_A CZRA, repressor protein 95.6 0.0075 2.5E-07 44.5 3.1 48 31-86 25-72 (106)
313 2kko_A Possible transcriptiona 95.6 0.0038 1.3E-07 46.3 1.5 46 33-86 26-71 (108)
314 2uyo_A Hypothetical protein ML 95.5 0.028 9.5E-07 50.0 7.1 123 190-317 102-274 (310)
315 2g7u_A Transcriptional regulat 95.5 0.0062 2.1E-07 52.7 2.8 59 35-105 17-75 (257)
316 2k4m_A TR8_protein, UPF0146 pr 95.4 0.021 7.3E-07 44.5 5.1 78 189-269 34-123 (153)
317 3lwf_A LIN1550 protein, putati 95.3 0.018 6.3E-07 45.8 4.8 46 48-100 43-88 (159)
318 2fu4_A Ferric uptake regulatio 95.3 0.011 3.9E-07 41.3 3.2 50 33-87 18-72 (83)
319 1on2_A Transcriptional regulat 95.3 0.011 3.8E-07 45.9 3.4 50 48-106 21-70 (142)
320 2o0y_A Transcriptional regulat 95.3 0.0083 2.8E-07 52.0 2.7 57 35-102 26-82 (260)
321 2ia2_A Putative transcriptiona 95.3 0.0067 2.3E-07 52.8 2.1 57 35-103 24-80 (265)
322 3df8_A Possible HXLR family tr 95.2 0.0076 2.6E-07 45.0 2.1 60 36-106 31-93 (111)
323 4auk_A Ribosomal RNA large sub 95.2 0.068 2.3E-06 48.4 8.7 36 188-225 209-244 (375)
324 1r1t_A Transcriptional repress 95.2 0.013 4.3E-07 44.6 3.3 47 32-86 46-92 (122)
325 3t8r_A Staphylococcus aureus C 95.2 0.022 7.5E-07 44.5 4.8 46 48-100 27-72 (143)
326 3bt7_A TRNA (uracil-5-)-methyl 95.2 0.02 6.8E-07 52.3 5.2 40 191-232 214-254 (369)
327 3f6v_A Possible transcriptiona 95.2 0.0089 3E-07 47.3 2.5 67 26-102 52-118 (151)
328 2oyr_A UPF0341 protein YHIQ; a 95.1 0.017 5.9E-07 49.9 4.4 36 188-225 84-122 (258)
329 3kp7_A Transcriptional regulat 95.1 0.082 2.8E-06 41.1 7.9 44 34-85 40-83 (151)
330 1z7u_A Hypothetical protein EF 95.0 0.013 4.3E-07 43.8 2.8 80 10-106 9-90 (112)
331 3k69_A Putative transcription 95.0 0.038 1.3E-06 44.1 5.6 47 48-101 27-73 (162)
332 2f2e_A PA1607; transcription f 94.9 0.019 6.7E-07 45.0 3.8 54 48-106 36-90 (146)
333 3g3z_A NMB1585, transcriptiona 94.9 0.041 1.4E-06 42.6 5.5 67 32-105 31-98 (145)
334 3bdd_A Regulatory protein MARR 94.8 0.03 1E-06 43.0 4.6 67 33-106 32-99 (142)
335 2wte_A CSA3; antiviral protein 94.8 0.016 5.6E-07 49.6 3.2 63 33-106 153-215 (244)
336 3r0a_A Putative transcriptiona 94.7 0.02 6.9E-07 43.4 3.3 48 33-86 27-75 (123)
337 2fsw_A PG_0823 protein; alpha- 94.7 0.015 5E-07 43.0 2.4 78 12-106 14-93 (107)
338 3vyw_A MNMC2; tRNA wobble urid 94.5 0.14 4.8E-06 45.2 8.6 22 302-323 228-249 (308)
339 2vz8_A Fatty acid synthase; tr 94.5 0.0095 3.2E-07 67.1 1.4 122 190-321 1240-1394(2512)
340 1jgs_A Multiple antibiotic res 94.5 0.048 1.7E-06 41.7 5.1 48 33-87 35-82 (138)
341 3k0l_A Repressor protein; heli 94.5 0.037 1.2E-06 43.9 4.4 67 33-106 47-114 (162)
342 3bja_A Transcriptional regulat 94.5 0.028 9.4E-07 43.0 3.6 48 32-86 33-80 (139)
343 1tbx_A ORF F-93, hypothetical 94.4 0.014 4.7E-07 42.3 1.7 64 34-106 10-77 (99)
344 3tka_A Ribosomal RNA small sub 94.4 0.047 1.6E-06 48.7 5.2 54 177-231 45-100 (347)
345 3bro_A Transcriptional regulat 94.4 0.031 1.1E-06 42.9 3.7 49 34-87 36-84 (141)
346 3nrv_A Putative transcriptiona 94.3 0.024 8.2E-07 44.1 2.9 48 32-86 40-87 (148)
347 2x4h_A Hypothetical protein SS 94.2 0.028 9.6E-07 43.3 3.1 48 48-105 30-77 (139)
348 1yyv_A Putative transcriptiona 94.2 0.024 8.2E-07 43.6 2.6 62 37-106 40-103 (131)
349 2hr3_A Probable transcriptiona 94.1 0.035 1.2E-06 43.0 3.5 49 31-86 34-83 (147)
350 3oop_A LIN2960 protein; protei 94.1 0.022 7.5E-07 44.0 2.3 48 32-86 37-84 (143)
351 1sfx_A Conserved hypothetical 94.1 0.041 1.4E-06 40.0 3.7 47 33-86 21-67 (109)
352 2b9e_A NOL1/NOP2/SUN domain fa 94.1 0.05 1.7E-06 48.3 4.8 43 188-230 100-144 (309)
353 2zig_A TTHA0409, putative modi 94.0 0.047 1.6E-06 48.1 4.6 49 178-230 225-274 (297)
354 2zkz_A Transcriptional repress 94.0 0.028 9.7E-07 40.8 2.6 50 29-86 24-73 (99)
355 2nnn_A Probable transcriptiona 94.0 0.022 7.6E-07 43.7 2.1 47 33-86 39-85 (140)
356 1ylf_A RRF2 family protein; st 93.9 0.041 1.4E-06 43.2 3.5 61 26-101 14-74 (149)
357 2lnb_A Z-DNA-binding protein 1 93.8 0.056 1.9E-06 36.7 3.4 56 33-99 20-75 (80)
358 3bpv_A Transcriptional regulat 93.8 0.034 1.2E-06 42.5 2.8 47 33-86 30-76 (138)
359 2fbh_A Transcriptional regulat 93.7 0.042 1.4E-06 42.4 3.3 46 34-86 39-85 (146)
360 2gxg_A 146AA long hypothetical 93.7 0.04 1.4E-06 42.6 3.2 47 33-87 38-84 (146)
361 2bv6_A MGRA, HTH-type transcri 93.7 0.032 1.1E-06 42.9 2.6 49 32-87 37-85 (142)
362 2fa5_A Transcriptional regulat 93.7 0.036 1.2E-06 43.8 2.9 47 33-86 50-96 (162)
363 3hsr_A HTH-type transcriptiona 93.6 0.021 7.3E-07 44.0 1.4 67 33-106 37-104 (140)
364 2eth_A Transcriptional regulat 93.6 0.045 1.5E-06 42.9 3.3 48 32-86 44-91 (154)
365 2rdp_A Putative transcriptiona 93.6 0.04 1.4E-06 42.8 3.0 46 34-86 44-89 (150)
366 3cdh_A Transcriptional regulat 93.6 0.034 1.2E-06 43.6 2.5 66 33-105 44-110 (155)
367 2h09_A Transcriptional regulat 93.6 0.063 2.2E-06 42.2 4.1 54 40-105 48-101 (155)
368 3bj6_A Transcriptional regulat 93.5 0.04 1.4E-06 42.9 2.9 46 34-86 42-87 (152)
369 2pg4_A Uncharacterized protein 93.5 0.02 7E-07 41.1 1.0 62 37-105 20-82 (95)
370 2nyx_A Probable transcriptiona 93.5 0.14 4.9E-06 40.6 6.2 67 33-106 46-113 (168)
371 2a61_A Transcriptional regulat 93.5 0.032 1.1E-06 43.1 2.2 68 32-106 33-101 (145)
372 3fm5_A Transcriptional regulat 93.4 0.034 1.2E-06 43.3 2.3 49 32-86 39-87 (150)
373 1xd7_A YWNA; structural genomi 93.4 0.11 3.8E-06 40.5 5.2 44 49-101 24-67 (145)
374 1lj9_A Transcriptional regulat 93.3 0.042 1.5E-06 42.3 2.7 47 34-87 31-77 (144)
375 2pex_A Transcriptional regulat 93.3 0.044 1.5E-06 42.8 2.8 68 33-107 48-116 (153)
376 3tgn_A ADC operon repressor AD 93.3 0.05 1.7E-06 42.0 3.1 47 32-86 38-84 (146)
377 2qww_A Transcriptional regulat 93.3 0.23 7.8E-06 38.6 7.0 67 33-106 42-111 (154)
378 2zwa_A Leucine carboxyl methyl 93.3 0.16 5.5E-06 50.3 7.4 127 190-322 107-309 (695)
379 3cjn_A Transcriptional regulat 93.3 0.04 1.4E-06 43.5 2.5 48 32-86 52-99 (162)
380 3p8z_A Mtase, non-structural p 93.2 0.094 3.2E-06 44.2 4.6 91 178-271 67-189 (267)
381 1z91_A Organic hydroperoxide r 93.2 0.038 1.3E-06 42.8 2.2 69 32-107 40-109 (147)
382 3boq_A Transcriptional regulat 93.1 0.19 6.3E-06 39.4 6.2 47 33-86 48-95 (160)
383 3eco_A MEPR; mutlidrug efflux 93.1 0.044 1.5E-06 42.0 2.4 50 33-87 32-81 (139)
384 4hbl_A Transcriptional regulat 93.1 0.031 1.1E-06 43.6 1.6 48 32-86 41-88 (149)
385 1s3j_A YUSO protein; structura 93.1 0.21 7.1E-06 38.8 6.4 47 34-87 39-85 (155)
386 3s2w_A Transcriptional regulat 93.1 0.04 1.4E-06 43.5 2.2 46 35-87 53-98 (159)
387 3e6m_A MARR family transcripti 93.0 0.037 1.3E-06 43.8 1.9 47 33-86 54-100 (161)
388 2lkp_A Transcriptional regulat 93.0 0.07 2.4E-06 39.9 3.4 47 32-86 32-78 (119)
389 2fbi_A Probable transcriptiona 92.9 0.033 1.1E-06 42.8 1.4 48 32-86 36-83 (142)
390 3jw4_A Transcriptional regulat 92.9 0.048 1.7E-06 42.3 2.4 48 34-86 43-90 (148)
391 3deu_A Transcriptional regulat 92.8 0.056 1.9E-06 43.1 2.8 49 32-86 53-101 (166)
392 3mag_A VP39; methylated adenin 92.8 0.31 1.1E-05 42.3 7.4 80 190-272 60-143 (307)
393 2cfx_A HTH-type transcriptiona 92.7 0.094 3.2E-06 40.7 3.9 46 34-86 7-52 (144)
394 2wk1_A NOVP; transferase, O-me 92.7 0.11 3.6E-06 45.5 4.6 34 189-222 105-143 (282)
395 3f3x_A Transcriptional regulat 92.7 0.2 6.8E-06 38.5 5.7 64 33-106 38-104 (144)
396 2w25_A Probable transcriptiona 92.7 0.098 3.4E-06 40.9 4.0 47 33-86 8-54 (150)
397 3lkz_A Non-structural protein 92.7 0.094 3.2E-06 45.7 4.0 87 178-265 83-202 (321)
398 2px2_A Genome polyprotein [con 92.6 0.36 1.2E-05 41.3 7.5 33 178-211 62-94 (269)
399 2obp_A Putative DNA-binding pr 92.6 0.085 2.9E-06 38.0 3.1 36 48-87 35-70 (96)
400 2p4w_A Transcriptional regulat 92.5 0.11 3.7E-06 43.0 4.2 69 27-103 10-81 (202)
401 2qvo_A Uncharacterized protein 92.4 0.051 1.7E-06 39.0 1.8 52 49-106 30-81 (95)
402 4aik_A Transcriptional regulat 92.4 0.13 4.3E-06 40.3 4.3 48 34-87 33-80 (151)
403 2pn6_A ST1022, 150AA long hypo 92.4 0.083 2.8E-06 41.3 3.2 47 33-86 4-50 (150)
404 3u1d_A Uncharacterized protein 92.4 0.1 3.5E-06 40.9 3.6 70 33-107 30-106 (151)
405 2frh_A SARA, staphylococcal ac 92.4 0.041 1.4E-06 41.8 1.3 48 34-86 39-86 (127)
406 2p5v_A Transcriptional regulat 92.3 0.11 3.9E-06 41.1 4.0 47 33-86 11-57 (162)
407 1q1h_A TFE, transcription fact 92.3 0.077 2.6E-06 39.1 2.7 47 34-86 20-66 (110)
408 3s1s_A Restriction endonucleas 92.0 0.088 3E-06 52.5 3.5 42 188-229 319-364 (878)
409 1bja_A Transcription regulator 91.9 0.094 3.2E-06 37.6 2.6 61 34-107 18-79 (95)
410 2esh_A Conserved hypothetical 91.8 0.25 8.6E-06 36.9 5.2 70 29-106 10-90 (118)
411 2cg4_A Regulatory protein ASNC 91.8 0.12 4.3E-06 40.4 3.6 46 34-86 10-55 (152)
412 1p6r_A Penicillinase repressor 91.8 0.085 2.9E-06 36.6 2.3 51 33-86 10-60 (82)
413 3hrs_A Metalloregulator SCAR; 91.8 0.09 3.1E-06 44.0 2.8 50 48-106 19-68 (214)
414 2k4b_A Transcriptional regulat 91.8 0.068 2.3E-06 38.8 1.8 50 34-86 37-86 (99)
415 2dbb_A Putative HTH-type trans 91.7 0.13 4.5E-06 40.2 3.6 47 33-86 10-56 (151)
416 3nqo_A MARR-family transcripti 91.6 0.11 3.6E-06 42.4 3.1 72 31-107 40-112 (189)
417 2cyy_A Putative HTH-type trans 91.6 0.11 3.8E-06 40.7 3.0 47 33-86 8-54 (151)
418 1ku9_A Hypothetical protein MJ 91.5 0.16 5.4E-06 39.2 3.8 44 37-86 31-74 (152)
419 2d1h_A ST1889, 109AA long hypo 91.5 0.15 5.1E-06 36.9 3.5 35 48-86 35-69 (109)
420 2ia0_A Putative HTH-type trans 91.4 0.16 5.6E-06 40.7 4.0 47 33-86 18-64 (171)
421 2o03_A Probable zinc uptake re 91.4 0.17 6E-06 38.6 4.0 52 30-87 9-65 (131)
422 2fbk_A Transcriptional regulat 91.4 0.077 2.6E-06 42.9 2.0 50 33-86 70-119 (181)
423 1uly_A Hypothetical protein PH 91.4 0.19 6.3E-06 41.3 4.3 51 28-86 16-66 (192)
424 2e1c_A Putative HTH-type trans 91.2 0.14 4.9E-06 41.1 3.4 48 32-86 27-74 (171)
425 3khk_A Type I restriction-modi 91.2 0.087 3E-06 50.6 2.4 51 178-230 234-300 (544)
426 4fx0_A Probable transcriptiona 91.2 0.085 2.9E-06 41.2 2.0 48 35-86 36-85 (148)
427 2fe3_A Peroxide operon regulat 91.0 0.26 9E-06 38.3 4.6 62 31-99 21-87 (145)
428 1i1g_A Transcriptional regulat 91.0 0.14 4.8E-06 39.4 3.0 46 34-86 6-51 (141)
429 1sfu_A 34L protein; protein/Z- 90.9 0.36 1.2E-05 32.8 4.6 52 38-99 21-72 (75)
430 3i4p_A Transcriptional regulat 90.9 0.15 5E-06 40.6 3.1 47 33-86 4-50 (162)
431 1i4w_A Mitochondrial replicati 90.8 0.3 1E-05 44.0 5.5 39 191-229 59-98 (353)
432 2fxa_A Protease production reg 90.7 0.086 2.9E-06 43.8 1.7 66 34-106 50-116 (207)
433 3k2z_A LEXA repressor; winged 90.5 0.22 7.6E-06 40.8 4.0 35 48-86 23-57 (196)
434 3elk_A Putative transcriptiona 90.5 0.12 4E-06 38.8 2.1 75 25-107 7-90 (117)
435 2xvc_A ESCRT-III, SSO0910; cel 90.5 0.18 6.1E-06 32.0 2.6 47 34-86 12-58 (59)
436 2vn2_A DNAD, chromosome replic 90.5 0.11 3.8E-06 39.6 2.0 34 49-86 51-84 (128)
437 4esf_A PADR-like transcription 90.5 0.27 9.1E-06 36.8 4.1 72 27-106 6-86 (117)
438 3f8b_A Transcriptional regulat 90.4 0.25 8.7E-06 36.8 3.9 73 26-106 6-89 (116)
439 2qlz_A Transcription factor PF 90.3 0.052 1.8E-06 46.0 0.0 69 27-103 7-79 (232)
440 3u2r_A Regulatory protein MARR 90.1 0.12 4E-06 41.1 2.0 67 33-106 47-116 (168)
441 3i71_A Ethanolamine utilizatio 90.1 0.55 1.9E-05 29.8 4.5 43 48-100 17-59 (68)
442 1j5y_A Transcriptional regulat 89.9 0.33 1.1E-05 39.5 4.5 58 32-101 21-79 (187)
443 4g6q_A Putative uncharacterize 89.3 0.14 4.9E-06 41.5 1.9 69 27-103 18-90 (182)
444 3lkd_A Type I restriction-modi 89.1 0.25 8.5E-06 47.3 3.7 41 190-230 221-265 (542)
445 4b8x_A SCO5413, possible MARR- 89.1 0.1 3.6E-06 40.6 0.9 36 48-87 50-85 (147)
446 2dk5_A DNA-directed RNA polyme 88.7 0.28 9.5E-06 34.9 2.8 48 34-86 22-69 (91)
447 3l7w_A Putative uncharacterize 88.5 0.079 2.7E-06 39.1 -0.2 68 31-106 8-81 (108)
448 3mwm_A ZUR, putative metal upt 88.4 0.43 1.5E-05 36.8 4.0 67 30-99 12-79 (139)
449 2xig_A Ferric uptake regulatio 88.0 0.52 1.8E-05 36.8 4.3 61 31-98 26-91 (150)
450 1v4r_A Transcriptional repress 88.0 0.35 1.2E-05 35.0 3.1 52 28-86 15-68 (102)
451 1okr_A MECI, methicillin resis 87.9 0.21 7.1E-06 37.3 1.8 46 34-86 12-61 (123)
452 3ufb_A Type I restriction-modi 87.5 0.6 2.1E-05 44.6 5.2 52 178-230 206-271 (530)
453 1vpt_A VP39; RNA CAP, poly(A) 87.4 1.3 4.4E-05 38.9 6.6 79 191-272 76-158 (348)
454 1g60_A Adenine-specific methyl 87.3 0.62 2.1E-05 39.9 4.8 50 177-230 201-251 (260)
455 3hhh_A Transcriptional regulat 86.7 0.43 1.5E-05 35.6 2.9 72 27-106 8-88 (116)
456 3eyi_A Z-DNA-binding protein 1 86.5 0.78 2.7E-05 30.3 3.7 47 34-86 12-58 (72)
457 2b0l_A GTP-sensing transcripti 86.4 0.38 1.3E-05 34.9 2.5 35 48-86 41-76 (102)
458 1xma_A Predicted transcription 86.3 0.3 1E-05 38.0 2.0 70 29-106 38-118 (145)
459 2v79_A DNA replication protein 85.8 0.28 9.6E-06 37.7 1.5 34 49-86 51-84 (135)
460 3cta_A Riboflavin kinase; stru 85.7 0.36 1.2E-05 40.6 2.3 53 48-106 26-78 (230)
461 4fzv_A Putative methyltransfer 85.5 0.36 1.2E-05 43.6 2.3 39 188-226 146-185 (359)
462 1jhg_A Trp operon repressor; c 85.4 0.78 2.7E-05 33.2 3.6 41 31-79 44-84 (101)
463 2g9w_A Conserved hypothetical 85.4 0.54 1.8E-05 36.0 3.0 48 33-86 10-61 (138)
464 1sd4_A Penicillinase repressor 85.2 0.44 1.5E-05 35.6 2.4 51 33-86 11-61 (126)
465 1mzb_A Ferric uptake regulatio 84.7 0.89 3.1E-05 34.8 4.0 62 31-98 17-83 (136)
466 1fx7_A Iron-dependent represso 84.0 0.41 1.4E-05 40.3 1.9 47 51-106 26-72 (230)
467 2pjp_A Selenocysteine-specific 83.4 0.63 2.2E-05 34.9 2.5 46 33-86 8-53 (121)
468 2hoe_A N-acetylglucosamine kin 83.4 0.67 2.3E-05 42.1 3.2 70 26-103 14-87 (380)
469 1p4x_A Staphylococcal accessor 83.4 0.5 1.7E-05 40.4 2.2 50 33-87 159-208 (250)
470 3tqn_A Transcriptional regulat 83.1 0.92 3.1E-05 33.5 3.3 35 48-86 31-66 (113)
471 2p8t_A Hypothetical protein PH 83.1 0.61 2.1E-05 38.3 2.5 46 49-104 30-75 (200)
472 2py6_A Methyltransferase FKBM; 83.0 1.7 5.9E-05 39.9 5.9 41 189-229 225-268 (409)
473 1yg2_A Gene activator APHA; vi 82.9 0.98 3.3E-05 36.3 3.7 64 33-104 3-77 (179)
474 2ek5_A Predicted transcription 82.6 1.3 4.4E-05 33.6 4.0 35 48-86 26-61 (129)
475 2o0m_A Transcriptional regulat 82.3 0.26 8.9E-06 44.3 0.0 63 33-108 21-83 (345)
476 1bia_A BIRA bifunctional prote 82.2 1 3.5E-05 39.9 3.9 57 34-101 7-63 (321)
477 2vxz_A Pyrsv_GP04; viral prote 82.2 0.98 3.3E-05 34.8 3.1 44 35-86 14-57 (165)
478 1cf7_A Protein (transcription 80.8 1.1 3.9E-05 30.5 2.8 36 48-86 29-64 (76)
479 4esb_A Transcriptional regulat 80.2 0.68 2.3E-05 34.4 1.7 66 33-106 10-84 (115)
480 3by6_A Predicted transcription 79.9 1.4 4.8E-05 33.2 3.4 35 48-86 33-68 (126)
481 3rkx_A Biotin-[acetyl-COA-carb 79.2 1.8 6.1E-05 38.4 4.3 60 34-102 5-64 (323)
482 1z6r_A MLC protein; transcript 78.6 1.7 5.7E-05 39.8 4.1 51 29-86 13-63 (406)
483 2qq9_A Diphtheria toxin repres 78.5 1.1 3.8E-05 37.5 2.6 49 49-106 24-72 (226)
484 1z05_A Transcriptional regulat 78.4 1.9 6.4E-05 39.8 4.4 51 29-86 36-86 (429)
485 3iht_A S-adenosyl-L-methionine 78.2 11 0.00039 29.4 7.9 32 191-222 41-72 (174)
486 3c7j_A Transcriptional regulat 78.0 1.8 6.3E-05 36.4 3.9 36 47-86 47-82 (237)
487 3lmm_A Uncharacterized protein 77.6 1.5 5.2E-05 42.3 3.6 61 33-106 431-496 (583)
488 2yu3_A DNA-directed RNA polyme 77.4 1.8 6.3E-05 30.8 3.1 50 32-86 37-86 (95)
489 2qlz_A Transcription factor PF 77.1 3.4 0.00012 34.7 5.3 44 35-86 168-211 (232)
490 3neu_A LIN1836 protein; struct 77.0 2.5 8.4E-05 31.7 4.0 35 48-86 35-70 (125)
491 1pl8_A Human sorbitol dehydrog 76.8 12 0.0004 33.3 9.2 77 188-268 169-274 (356)
492 4dvj_A Putative zinc-dependent 76.3 5.7 0.0002 35.6 7.0 75 190-267 171-270 (363)
493 3eyy_A Putative iron uptake re 76.2 1.7 5.7E-05 33.6 2.9 54 31-87 18-72 (145)
494 3ke2_A Uncharacterized protein 76.1 3.1 0.00011 30.5 4.0 47 49-99 33-81 (117)
495 3maj_A DNA processing chain A; 75.6 1.2 4.2E-05 40.4 2.2 53 34-99 330-382 (382)
496 1hsj_A Fusion protein consisti 75.5 1 3.5E-05 42.1 1.8 50 33-87 405-454 (487)
497 2w57_A Ferric uptake regulatio 75.2 1.6 5.3E-05 34.0 2.5 52 31-87 16-72 (150)
498 3ri2_A Transcriptional regulat 74.8 2.5 8.5E-05 31.7 3.4 74 24-106 13-93 (123)
499 2zfw_A PEX; five alpha-helices 74.7 3.3 0.00011 32.2 4.2 62 37-106 49-121 (148)
500 1f8f_A Benzyl alcohol dehydrog 74.6 3.7 0.00013 36.8 5.3 79 188-269 188-291 (371)
No 1
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=100.00 E-value=6e-54 Score=396.73 Aligned_cols=312 Identities=22% Similarity=0.382 Sum_probs=276.4
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738 8 ERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
++.+++..|.+++.||+.+++|++|++|||||.|++.+ +|+|++|||+++|+ +++.++||||+|++.|++++..
T Consensus 4 ~e~~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~--~p~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~~~ 77 (353)
T 4a6d_A 4 SEDQAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAP--GPLDVAAVAAGVRA----SAHGTELLLDICVSLKLLKVET 77 (353)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSS--SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCC--CCCCHHHHHHhhCc----CHHHHHHHHHHHHHCCCEEEec
Confidence 45689999999999999999999999999999999854 69999999999999 9999999999999999998763
Q ss_pred cCCCccccccccccccccccCCCCCChhhhHhhccChhhHHhhhhhHHHHhcCCChhhhhcC---CChhhhhcCCchhHH
Q 035738 88 DASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAILEGGIPFNRAHG---MHTFEYAGLDPGFNK 164 (333)
Q Consensus 88 ~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g---~~~~~~~~~~~~~~~ 164 (333)
++ ..+.|++|+.+..++.+.++.++.+++.+. .+..+..|.+|.++++++++++...+| .++|+++.++|+...
T Consensus 78 ~~--~~~~y~~t~~s~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~vr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 154 (353)
T 4a6d_A 78 RG--GKAFYRNTELSSDYLTTVSPTSQCSMLKYM-GRTSYRCWGHLADAVREGRNQYLETFGVPAEELFTAIYRSEGERL 154 (353)
T ss_dssp ET--TEEEEEECHHHHHHHSTTSTTCCHHHHHHH-HHTHHHHHTTHHHHHHHTSCCHHHHHSCCCSSHHHHHTSSHHHHH
T ss_pred cC--ccceeeCCHHHHHHhhcCCchHHHHHHHHh-CHHHHHHHHHHHHHHhcCCChhHHhcCCChHHHHHHHhhCHHHHH
Confidence 22 256899999998777666667888888775 356788999999999999999988887 467999999999999
Q ss_pred HHHHHHhhhhhhhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC------CCe---
Q 035738 165 HFNTVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH------PCM--- 235 (333)
Q Consensus 165 ~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~------~gv--- 235 (333)
.|+++|........+.+++.++ ++...+|||||||+|.++..+++++|+++++++|+|.+++.+++. .+|
T Consensus 155 ~f~~aM~~~~~~~~~~~~~~~~-~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~ 233 (353)
T 4a6d_A 155 QFMQALQEVWSVNGRSVLTAFD-LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQ 233 (353)
T ss_dssp HHHHHHHTTHHHHHHHHHHSSC-GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeee
Confidence 9999999999888889999888 889999999999999999999999999999999999999876532 111
Q ss_pred ------------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCC
Q 035738 236 ------------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGG 297 (333)
Q Consensus 236 ------------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g 297 (333)
+|||+|+|++|.++|++++++|+|||+|+|+|.+.+++...+ .....+|+.|+.++ +|
T Consensus 234 ~gD~~~~~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~---~~~~~~dl~ml~~~-~g 309 (353)
T 4a6d_A 234 EGDFFKDPLPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGP---LLTQLYSLNMLVQT-EG 309 (353)
T ss_dssp ESCTTTSCCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCC---HHHHHHHHHHHHSS-SC
T ss_pred cCccccCCCCCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCC---HHHHHHHHHHHHhC-CC
Confidence 999999999999999999999999999999999988754432 23456799998875 99
Q ss_pred CcCCHHHHHHHHHhCCCCeeEEeecCCceeEEEEeC
Q 035738 298 KERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK 333 (333)
Q Consensus 298 ~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 333 (333)
++||.+||+++|++|||+.+++++.++.+++|+++|
T Consensus 310 ~ert~~e~~~ll~~AGf~~v~v~~~~~~~~~i~ArK 345 (353)
T 4a6d_A 310 QERTPTHYHMLLSSAGFRDFQFKKTGAIYDAILARK 345 (353)
T ss_dssp CCCCHHHHHHHHHHHTCEEEEEECCSSSCEEEEEEC
T ss_pred cCCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEEe
Confidence 999999999999999999999999999999999987
No 2
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=100.00 E-value=1.8e-51 Score=381.59 Aligned_cols=325 Identities=46% Similarity=0.872 Sum_probs=282.8
Q ss_pred CchhhhHHHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCC-CCCCCcc---cHHHHHHHHhcc
Q 035738 5 VDGERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTT-KNKDAPM---MLDRILRLLASY 80 (333)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~-~~~~~~~---~l~~lL~~L~~~ 80 (333)
...+-++++..+++++.|++.+++|++|++||||+.|++.| ++|+|++|||+++|+ + +++ .++||||+|++.
T Consensus 13 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g-~~~~t~~eLA~~~g~~~---~~~~~~~l~rlLr~L~~~ 88 (364)
T 3p9c_A 13 AASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAG-GKSLTPTEVAAKLPSAA---NPEAPDMVDRILRLLASY 88 (364)
T ss_dssp CHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTT-TCCBCHHHHHHTTTCTT---CTTHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcC-CCCCCHHHHHHhcCCCC---CccchhhHHHHHHHHHhC
Confidence 34567889999999999999999999999999999999853 259999999999995 3 455 999999999999
Q ss_pred cceeeecc---CCCccccccccccccccccCCCCCChhhhHhhccChhhHHhhhhhHHHHhcCCChhhhhcCCChhhhhc
Q 035738 81 SVVECSLD---ASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAG 157 (333)
Q Consensus 81 g~l~~~~~---~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g~~~~~~~~ 157 (333)
|+|+++.. +|..++.|++|+.+..|+.+.++.++++++.+...+.+++.|.+|.+++++|.++|+..+|.++|+|+.
T Consensus 89 g~l~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~~~~~~~~g~~~~~~~~ 168 (364)
T 3p9c_A 89 NVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHG 168 (364)
T ss_dssp TSEEEEEEECSSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHHT
T ss_pred CCEEEeccccCCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCCChHHHhcCCCHHHHHH
Confidence 99998631 111147899999999888776556899988876667789999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHhhhhhhhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCCCCe--
Q 035738 158 LDPGFNKHFNTVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM-- 235 (333)
Q Consensus 158 ~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~gv-- 235 (333)
++|+..+.|+++|...+......+++.++++++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.+++
T Consensus 169 ~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~ 248 (364)
T 3p9c_A 169 TDPRFNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTH 248 (364)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEE
T ss_pred hCHHHHHHHHHHHHHhhHHHHHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEE
Confidence 999999999999999988888888888876788899999999999999999999999999999999999988865322
Q ss_pred ------------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCC
Q 035738 236 ------------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGG 297 (333)
Q Consensus 236 ------------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g 297 (333)
++||+|+++++.++|++++++|+|||+|+|+|.+.++.............+|+.|+....+|
T Consensus 249 ~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g 328 (364)
T 3p9c_A 249 VGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGG 328 (364)
T ss_dssp EECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSC
T ss_pred EeCCcCCCCCCCCEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCC
Confidence 88999999999999999999999999999999998875433222223356788888544589
Q ss_pred CcCCHHHHHHHHHhCCCCeeEEeecCCceeEEEEeC
Q 035738 298 KERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK 333 (333)
Q Consensus 298 ~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 333 (333)
++||.++|.++|++|||+.+++++..+.+++||++|
T Consensus 329 ~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 364 (364)
T 3p9c_A 329 RERYEREFQALARGAGFTGVKSTYIYANAWAIEFTK 364 (364)
T ss_dssp CCCBHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred ccCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEeC
Confidence 999999999999999999999999999999999997
No 3
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=100.00 E-value=4.7e-51 Score=379.53 Aligned_cols=328 Identities=50% Similarity=0.858 Sum_probs=282.2
Q ss_pred chhhhHHHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhc-CCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhccccee
Q 035738 6 DGERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKA-GPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVE 84 (333)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~-~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~ 84 (333)
+.+..+.+.++++++.|++.+++|++|++|||||.|++. ||++|.|++|||+++|..++.+++.++||||+|++.|+|+
T Consensus 15 ~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll~ 94 (368)
T 3reo_A 15 HSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVT 94 (368)
T ss_dssp --CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSEE
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCeE
Confidence 335688999999999999999999999999999999986 6556899999999998322212349999999999999999
Q ss_pred eecc---CCCccccccccccccccccCCCCCChhhhHhhccChhhHHhhhhhHHHHhcCCChhhhhcCCChhhhhcCCch
Q 035738 85 CSLD---ASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPG 161 (333)
Q Consensus 85 ~~~~---~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g~~~~~~~~~~~~ 161 (333)
++.. +|..+++|++|+.++.|+.+.++.++++++.+...+.+++.|.+|.+++++|.++|+..+|.++|+|+.++|+
T Consensus 95 ~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~~~~~~~~g~~~~~~~~~~~~ 174 (368)
T 3reo_A 95 YTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDHR 174 (368)
T ss_dssp EEEEECTTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCSCHHHHHSSSCHHHHHTTCHH
T ss_pred EecccCCCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCCCHHHHHhCCCHHHHHhhCHH
Confidence 8621 1111478999999998887766678999888776778899999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhhhhhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCCCCe------
Q 035738 162 FNKHFNTVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM------ 235 (333)
Q Consensus 162 ~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~gv------ 235 (333)
..+.|+++|...+......+++.++++++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.+++
T Consensus 175 ~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d 254 (368)
T 3reo_A 175 INKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGD 254 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECC
T ss_pred HHHHHHHHHHhhhhhHHHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEEecC
Confidence 99999999999988888888888866778899999999999999999999999999999999999988865332
Q ss_pred --------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCC
Q 035738 236 --------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERT 301 (333)
Q Consensus 236 --------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt 301 (333)
++||+|+++++.++|++++++|+|||+|+|+|.+.++.............+|+.|+..+.+|++||
T Consensus 255 ~~~~~p~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt 334 (368)
T 3reo_A 255 MFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERT 334 (368)
T ss_dssp TTTCCCCCSEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCC
T ss_pred CCCCCCCCCEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCC
Confidence 889999999999999999999999999999999987654332222234567888886545899999
Q ss_pred HHHHHHHHHhCCCCeeEEeecCCceeEEEEeC
Q 035738 302 RHEFMTLATGAGFSGISCERAIGNLWVMEFYK 333 (333)
Q Consensus 302 ~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 333 (333)
.++|+++|++|||+.+++.+..++.++||++|
T Consensus 335 ~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 366 (368)
T 3reo_A 335 EKEFQALAMASGFRGFKVASCAFNTYVMEFLK 366 (368)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHCCCeeeEEEEeCCCcEEEEEEe
Confidence 99999999999999999999999999999986
No 4
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=100.00 E-value=9e-47 Score=348.40 Aligned_cols=305 Identities=23% Similarity=0.323 Sum_probs=269.1
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738 8 ERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
..++....|++++.|++.+++|++|+++|||+.|++ ||.|++|||+++|+ +++.++||||+|++.|+|++.
T Consensus 18 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~----g~~t~~elA~~~g~----~~~~l~rlLr~l~~~g~l~~~- 88 (348)
T 3lst_A 18 DRLQSALALYEEAMGYTYAAALRAAAAVGVADHLVD----GPRTPAELAAATGT----DADALRRVLRLLAVRDVVRES- 88 (348)
T ss_dssp CHHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT----SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEec-
Confidence 456788899999999999999999999999999987 59999999999999 999999999999999999984
Q ss_pred cCCCccccccccccccccccCCCCCChhhhHhhccChhhHHhhhhhHHHHhcCCChhhhhcCCChhhhhcCCchhHHHHH
Q 035738 88 DASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFN 167 (333)
Q Consensus 88 ~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~ 167 (333)
++.|++|+.+..|..+.+ .++.+++.+...+.+++.|.+|.+++++|.++|+..+|.++|+|+.++|+....|.
T Consensus 89 -----~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~ 162 (348)
T 3lst_A 89 -----DGRFALTDKGAALRSDSP-VPARAGILMFTDTMFWTMSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYY 162 (348)
T ss_dssp -----TTEEEECTTTGGGSTTSS-SCSHHHHHHHTSHHHHHHHHTHHHHTCTTCCCHHHHHSSCHHHHHTTCHHHHHHHH
T ss_pred -----CCEEecCHHHHHHhcCCC-ccHHHHHHHhcCHHHHHHHHHHHHHHhcCCChhhHHhCCCHHHHHHhCHHHHHHHH
Confidence 689999999998865543 47888887765666789999999999999999999999889999999999999999
Q ss_pred HHHhhhhhhhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC---------------
Q 035738 168 TVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH--------------- 232 (333)
Q Consensus 168 ~~m~~~~~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~--------------- 232 (333)
++|........+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.++...+..
T Consensus 163 ~~m~~~~~~~~~~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~ 241 (348)
T 3lst_A 163 EGMETVSAAEHLILARAGD-FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDF 241 (348)
T ss_dssp HHHHHHHHTTHHHHHHHSC-CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCT
T ss_pred HHHHHhhhhhHHHHHHhCC-ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCC
Confidence 9999999988889999887 888999999999999999999999999999999998777632211
Q ss_pred ----CC--e----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCH
Q 035738 233 ----PC--M----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTR 302 (333)
Q Consensus 233 ----~g--v----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~ 302 (333)
|+ + ++||+|+++++.++|++++++|+|||+|+|.|.+.++.... .....+++.|+.. .+++.++.
T Consensus 242 ~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~----~~~~~~d~~~~~~-~~~~~~t~ 316 (348)
T 3lst_A 242 LREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDA----HQSKEMDFMMLAA-RTGQERTA 316 (348)
T ss_dssp TTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSC----CHHHHHHHHHHHT-TSCCCCBH
T ss_pred CCCCCCCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc----chhhhcChhhhhc-CCCcCCCH
Confidence 11 1 88999999999999999999999999999999988765322 2235677888765 58999999
Q ss_pred HHHHHHHHhCCCCeeEEeecCCceeEEEEeC
Q 035738 303 HEFMTLATGAGFSGISCERAIGNLWVMEFYK 333 (333)
Q Consensus 303 ~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 333 (333)
++|.++|+++||+++++++..+..++||++|
T Consensus 317 ~e~~~ll~~aGf~~~~~~~~~~~~~vie~~p 347 (348)
T 3lst_A 317 AELEPLFTAAGLRLDRVVGTSSVMSIAVGVP 347 (348)
T ss_dssp HHHHHHHHHTTEEEEEEEECSSSCEEEEEEE
T ss_pred HHHHHHHHHCCCceEEEEECCCCcEEEEEEe
Confidence 9999999999999999999878899999985
No 5
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=100.00 E-value=9.8e-47 Score=350.72 Aligned_cols=306 Identities=23% Similarity=0.431 Sum_probs=270.5
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 7 GERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
........+|++++.|++.+++|++|+++||||.|++ ||.|++|||+++|+ +++.++||||+|++.|+++++
T Consensus 33 ~~~~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~----g~~t~~eLA~~~g~----~~~~l~rlLr~L~~~g~l~~~ 104 (369)
T 3gwz_A 33 AARAAAEETVNDILQGAWKARAIHVAVELGVPELLQE----GPRTATALAEATGA----HEQTLRRLLRLLATVGVFDDL 104 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT----SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSSEEC
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC----CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCCEEEe
Confidence 3456778899999999999999999999999999996 59999999999999 999999999999999999986
Q ss_pred ccCCCcccc-ccccccccccccCCCCCChhhhHhhccChhhHHhhhhhHHHHhcCCChhhhhcCCChhhhhcCCchhHHH
Q 035738 87 LDASGARRL-YSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKH 165 (333)
Q Consensus 87 ~~~~~~~~~-y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~ 165 (333)
+++. |.+|+.++.|..+.. .++.+++.+...+..+..|.+|.++++++.++|...+|.++|+|+.++|+..+.
T Consensus 105 -----~~~~~y~~t~~s~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~ 178 (369)
T 3gwz_A 105 -----GHDDLFAQNALSAVLLPDPA-SPVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPKAREL 178 (369)
T ss_dssp -----SSTTEEECCHHHHTTSCCTT-CHHHHHHHHHHSHHHHHHHHTHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHH
T ss_pred -----CCCceEecCHHHHHHhcCCc-hhHHHHHHHcCCHHHHHHHHhHHHHHhCCCChhHhhcCCCHHHHHHhCHHHHHH
Confidence 3678 999999998765543 478888877655567789999999999999999999998899999999999999
Q ss_pred HHHHHhhhhhhhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC-------------
Q 035738 166 FNTVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH------------- 232 (333)
Q Consensus 166 f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~------------- 232 (333)
|.++|........+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.
T Consensus 179 f~~~m~~~~~~~~~~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~ 257 (369)
T 3gwz_A 179 FNRAMGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEIL 257 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred HHHHHHHHHhhhHHHHHHhCC-CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEe
Confidence 999999998888888988887 888899999999999999999999999999999998888776531
Q ss_pred --------C-C--e----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCC
Q 035738 233 --------P-C--M----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGG 297 (333)
Q Consensus 233 --------~-g--v----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g 297 (333)
| + + ++||+|+++++.++|++++++|+|||+++|+|.+.++.... . ...+|+.|+.. .++
T Consensus 258 ~~d~~~~~p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~----~-~~~~d~~~~~~-~~g 331 (369)
T 3gwz_A 258 PGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAA----S-TLFVDLLLLVL-VGG 331 (369)
T ss_dssp ECCTTTCCCSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCH----H-HHHHHHHHHHH-HSC
T ss_pred ccCCCCCCCCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCC----c-hhHhhHHHHhh-cCC
Confidence 1 1 1 88999999999999999999999999999999988765322 1 35678888766 489
Q ss_pred CcCCHHHHHHHHHhCCCCeeEEee-cCCceeEEEEeC
Q 035738 298 KERTRHEFMTLATGAGFSGISCER-AIGNLWVMEFYK 333 (333)
Q Consensus 298 ~~rt~~e~~~ll~~aGf~~~~~~~-~~~~~~vie~~~ 333 (333)
++||.++|.++|+++||+++++++ ..+..++||++|
T Consensus 332 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 332 AERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368 (369)
T ss_dssp CCBCHHHHHHHHHTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred ccCCHHHHHHHHHHCCCeEEEEEECCCCCcEEEEEEe
Confidence 999999999999999999999999 678899999986
No 6
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=100.00 E-value=1.2e-45 Score=343.85 Aligned_cols=325 Identities=43% Similarity=0.717 Sum_probs=257.1
Q ss_pred hhhHHHHHHH--HHHhhhhHHHHHHHHHHhChhhHhhhcC-CCCCCCHHHHHHHhCC--CCCCCcccHHHHHHHHhcccc
Q 035738 8 ERDQSFAYAN--QLARGIVLPMAMQAVYELGIFEIIDKAG-PGAKLSASDIAAQLTT--KNKDAPMMLDRILRLLASYSV 82 (333)
Q Consensus 8 ~~~~~~~~l~--~~~~~~~~~~~l~~a~~lglfd~L~~~~-~~g~~t~~ela~~~g~--~~~~~~~~l~~lL~~L~~~g~ 82 (333)
+.++....|+ +++.|++.+++|++|+++|||+.|++.| |+++.|++|||+++|+ ++|.+++.++||||+|++.|+
T Consensus 18 ~~~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~gl 97 (372)
T 1fp1_D 18 EQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSV 97 (372)
T ss_dssp -CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTS
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCCc
Confidence 3456677788 9999999999999999999999999753 2223999999999998 233357899999999999999
Q ss_pred eeeec---cCCCccccccccccccccccCCCCCChhhhHhhccChhhHHhhhhhHHHHhcC-CChhhhhcCCChhhhhcC
Q 035738 83 VECSL---DASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAILEG-GIPFNRAHGMHTFEYAGL 158 (333)
Q Consensus 83 l~~~~---~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g-~~~~~~~~g~~~~~~~~~ 158 (333)
|+++. ++|..++.|++|+.+..|..+.+..++++++.+...+.++..|.+|+++++++ .++|+..+|.++|+++.+
T Consensus 98 l~~~~~~~~~g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~~~~~~ 177 (372)
T 1fp1_D 98 LTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGK 177 (372)
T ss_dssp EEEEEEECTTSCEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCSS
T ss_pred eEecccccCCCCcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhCCCHHHHHHh
Confidence 99861 01101368999999997776543247888888766667888999999999998 889998889889999999
Q ss_pred CchhHHHHHHHHhhhhhhhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCCCCe---
Q 035738 159 DPGFNKHFNTVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM--- 235 (333)
Q Consensus 159 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~gv--- 235 (333)
+|+....|+.+|...+......+++.++.+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.+++
T Consensus 178 ~~~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~v~~~ 257 (372)
T 1fp1_D 178 DKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHV 257 (372)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEE
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhcCCCEEE
Confidence 99999999999999888878888888865778899999999999999999999999999999999999988864332
Q ss_pred -----------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCC
Q 035738 236 -----------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGK 298 (333)
Q Consensus 236 -----------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~ 298 (333)
++||+|+++++.++|++++++|+|||+++|.|...++....+........+++.|+.. .+++
T Consensus 258 ~~d~~~~~~~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~ 336 (372)
T 1fp1_D 258 GGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFIT-VGGR 336 (372)
T ss_dssp ECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHH-HSCC
T ss_pred eCCcccCCCCCCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhc-cCCc
Confidence 8899999999999999999999999999999998876543211111245667777654 4789
Q ss_pred cCCHHHHHHHHHhCCCCeeEEeecC-CceeEEEEeC
Q 035738 299 ERTRHEFMTLATGAGFSGISCERAI-GNLWVMEFYK 333 (333)
Q Consensus 299 ~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~~ 333 (333)
.|+.++|.++|+++||+++++++.. +..++||++|
T Consensus 337 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~vie~~~ 372 (372)
T 1fp1_D 337 ERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372 (372)
T ss_dssp CEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred cCCHHHHHHHHHHCCCceEEEEEcCCCCeEEEEEeC
Confidence 9999999999999999999999854 4269999987
No 7
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=100.00 E-value=1.6e-45 Score=341.40 Aligned_cols=320 Identities=29% Similarity=0.441 Sum_probs=270.0
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738 8 ERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
+.+++...|++++.+++.+++|++|+++|||+.|++.| ||.|++|||+++|+ ++.+++.++||||+|++.|+|++..
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~--~~~t~~eLA~~~g~-~~~~~~~l~rlLr~L~~~gll~~~~ 82 (358)
T 1zg3_A 6 ELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHG--KPMTLSELASSLKL-HPSKVNILHRFLRLLTHNGFFAKTI 82 (358)
T ss_dssp CCTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHT--SCEEHHHHHHHTTC-CTTTHHHHHHHHHHHHHTTSEEEEE
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcC--CCcCHHHHHHhcCC-CCcchHHHHHHHHHHhhCCcEEEec
Confidence 45566788999999999999999999999999999853 48999999999999 2224779999999999999999861
Q ss_pred ----c-CCCccccccccccccccccCCCCCChhhhHhhccChhhHHhhhhhHHHHhcC--CChhhhhcCCChhhhhcCCc
Q 035738 88 ----D-ASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAILEG--GIPFNRAHGMHTFEYAGLDP 160 (333)
Q Consensus 88 ----~-~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g--~~~~~~~~g~~~~~~~~~~~ 160 (333)
+ +|..++.|++|+.+..|..+.+ .++++++.+...+.+++.|.+|+++++++ .++|+.++|.++|+|+.++|
T Consensus 83 ~~~~~~~g~~~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~p 161 (358)
T 1zg3_A 83 VKGKEGDEEEEIAYSLTPPSKLLISGKP-TCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDS 161 (358)
T ss_dssp ECCSSSSCCCEEEEEECHHHHTTCTTST-TCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSGG
T ss_pred ccccccCCCCCCEEeCCHHHHHHhCCCC-ccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhcCh
Confidence 0 1111479999999997776554 57888888766667789999999999998 67899889988999999999
Q ss_pred hhHH--HHHHHHhhhhhhhHHHHHhhcc-CCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCCCCe--
Q 035738 161 GFNK--HFNTVMYNYTSLVMSNILESYK-GFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM-- 235 (333)
Q Consensus 161 ~~~~--~f~~~m~~~~~~~~~~~~~~~~-~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~gv-- 235 (333)
+..+ .|+.+|...+.... .+++.++ .+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.+++
T Consensus 162 ~~~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~ 240 (358)
T 1zg3_A 162 ESSTLSMFQDAMASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNF 240 (358)
T ss_dssp GHHHHHHHHHHHHHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEE
T ss_pred hhhhHHHHHHHHhcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEE
Confidence 9999 99999998887766 7777772 2677889999999999999999999999999999999999988764322
Q ss_pred ------------------EEEccCChhHHHHHHHHHHHhCCC---CcEEEEEeeecCCCCCCccccccccchhhHHHhhC
Q 035738 236 ------------------WILHDWNDEHCLKLLKNCYKSIPE---DGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQS 294 (333)
Q Consensus 236 ------------------~vLh~~~~~~~~~lL~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~ 294 (333)
++||+|+++++.++|++++++|+| ||+++|+|...++....+........+++.|+..
T Consensus 241 ~~~d~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~- 319 (358)
T 1zg3_A 241 VGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTM- 319 (358)
T ss_dssp EECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHH-
T ss_pred EeCccCCCCCCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhcc-
Confidence 889999999999999999999999 9999999998876533210112345677777764
Q ss_pred CCCCcCCHHHHHHHHHhCCCCeeEEeecCCceeEEEEeC
Q 035738 295 PGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK 333 (333)
Q Consensus 295 ~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 333 (333)
.+|+.|+.++|.++|+++||+.+++++.++..++||++|
T Consensus 320 ~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 358 (358)
T 1zg3_A 320 FLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358 (358)
T ss_dssp HSCCCEEHHHHHHHHHHTTCCEEEEEEETTTEEEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHcCCCeeEEEecCCCcEEEEEeC
Confidence 489999999999999999999999999888889999986
No 8
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=100.00 E-value=4.1e-46 Score=341.90 Aligned_cols=295 Identities=23% Similarity=0.334 Sum_probs=258.5
Q ss_pred HHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccc
Q 035738 15 YANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARR 94 (333)
Q Consensus 15 ~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~ 94 (333)
.|.+++.||+.+++|++|+++||||.|.+ ||.|++|||+++|+ +++.++||||+|++.|++.++ +++
T Consensus 8 ~l~~~~~g~~~~~~l~~a~~lglf~~l~~----g~~t~~elA~~~~~----~~~~l~rlLr~l~~~gl~~~~-----~~~ 74 (332)
T 3i53_A 8 IGLRALADLATPMAVRVAATLRVADHIAA----GHRTAAEIASAAGA----HADSLDRLLRHLVAVGLFTRD-----GQG 74 (332)
T ss_dssp SCHHHHTCCHHHHHHHHHHHHTHHHHHHT----TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC-----TTS
T ss_pred HHHHHHHhhHHHHHHHHHHHcChHHHHhc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCcEEec-----CCC
Confidence 47889999999999999999999999987 59999999999999 999999999999999999986 368
Q ss_pred cccccccccccccCCCCCChhhhHhhccChhhH-HhhhhhHHHHhcCCChhhhhcCCChhhhhcCCchhHHHHHHHHhhh
Q 035738 95 LYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFL-ECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNY 173 (333)
Q Consensus 95 ~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~ 173 (333)
.|.+|+.++.+..+.. .++.+++.+...+..+ ..|.+|.++++++.++|+..+|.++|+++.++|+....|.++|...
T Consensus 75 ~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~ 153 (332)
T 3i53_A 75 VYGLTEFGEQLRDDHA-AGKRKWLDMNSAVGRGDLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMSHH 153 (332)
T ss_dssp BEEECTTGGGGSTTCT-TCCHHHHCTTSHHHHHGGGGGGHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHH
T ss_pred eEEcCHhHHHHhcCCc-hhHHHHHHHcCCHhHHHHHHHHhHHHHhcCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHHHHh
Confidence 9999999998865543 5788888765444455 7899999999999999998999889999999999999999999998
Q ss_pred hhhhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC---------------------
Q 035738 174 TSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH--------------------- 232 (333)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~--------------------- 232 (333)
.....+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.
T Consensus 154 ~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 232 (332)
T 3i53_A 154 LELDYTGIAAKYD-WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPL 232 (332)
T ss_dssp HHHHHTTGGGSSC-CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC
T ss_pred HHhhHHHHHHhCC-CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCC
Confidence 8877777777777 778899999999999999999999999999999998888776531
Q ss_pred C-C--e----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHH
Q 035738 233 P-C--M----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEF 305 (333)
Q Consensus 233 ~-g--v----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~ 305 (333)
| + + ++||+|+++++.++|++++++|+|||+++|.|.+.++. .+ ...+++.|+.. .+++.||.++|
T Consensus 233 p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~------~~~~d~~~~~~-~~~~~~t~~e~ 304 (332)
T 3i53_A 233 PAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE-HA------GTGMDLRMLTY-FGGKERSLAEL 304 (332)
T ss_dssp CCSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC----C------CHHHHHHHHHH-HSCCCCCHHHH
T ss_pred CCCCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC-Cc------cHHHHHHHHhh-CCCCCCCHHHH
Confidence 1 1 1 88999999999999999999999999999999988764 11 24678888766 48999999999
Q ss_pred HHHHHhCCCCeeEEeecCCceeEEEEeC
Q 035738 306 MTLATGAGFSGISCERAIGNLWVMEFYK 333 (333)
Q Consensus 306 ~~ll~~aGf~~~~~~~~~~~~~vie~~~ 333 (333)
.++|+++||+.+++++.++ +++||++|
T Consensus 305 ~~ll~~aGf~~~~~~~~~~-~~vie~r~ 331 (332)
T 3i53_A 305 GELAAQAGLAVRAAHPISY-VSIVEMTA 331 (332)
T ss_dssp HHHHHHTTEEEEEEEECSS-SEEEEEEE
T ss_pred HHHHHHCCCEEEEEEECCC-cEEEEEee
Confidence 9999999999999999988 99999875
No 9
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=100.00 E-value=4e-45 Score=337.91 Aligned_cols=318 Identities=27% Similarity=0.439 Sum_probs=269.8
Q ss_pred chhhhHHHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceee
Q 035738 6 DGERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVEC 85 (333)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~ 85 (333)
+.+-++....|++++.+++.+++|++++++|||+.|++.+ ||.|++|||+++|+ .|.+++.++||||+|++.|+|++
T Consensus 10 ~~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~--~~~t~~ela~~~~~-~~~~~~~l~rlLr~L~~~gll~~ 86 (352)
T 1fp2_A 10 PSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHG--KPISLSNLVSILQV-PSSKIGNVRRLMRYLAHNGFFEI 86 (352)
T ss_dssp STHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHT--SCEEHHHHHHHHTC-CGGGHHHHHHHHHHHHHTTSEEE
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcC--CCccHHHHHHHhCc-CCCChHHHHHHHHHHHhCCeEEE
Confidence 3567788899999999999999999999999999999753 48999999999999 12237789999999999999998
Q ss_pred eccCCCccccccccccccccccCCCCCChhhhHhhccChhhHHhhhhhHHHHh-cCCChhhhhcCCChhhhhcCCchhHH
Q 035738 86 SLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAIL-EGGIPFNRAHGMHTFEYAGLDPGFNK 164 (333)
Q Consensus 86 ~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~-~g~~~~~~~~g~~~~~~~~~~~~~~~ 164 (333)
++ + .++.|++|+.+..|..+.+ .++++++.+...+.++..|.+|+++++ +|.++|+..+|.++|+++.++|+..+
T Consensus 87 ~~-~--~~~~y~~t~~s~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~ 162 (352)
T 1fp2_A 87 IT-K--EEESYALTVASELLVRGSD-LCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNT 162 (352)
T ss_dssp EE-S--SSEEEEECHHHHTTSTTSS-SCCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHH
T ss_pred ec-C--CCCeEeCCHHHHHHhCCCC-ccHHHHHHHhcCchHHHHHHHHHHHHHhcCCChHHHHcCCCHHHHHHhChHHHH
Confidence 61 0 1579999999998776544 578888887666677889999999999 88889998899899999999999999
Q ss_pred HHHHHHhhhhhhhHHHHHhhcc-CCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCCCCe--------
Q 035738 165 HFNTVMYNYTSLVMSNILESYK-GFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPHPCM-------- 235 (333)
Q Consensus 165 ~f~~~m~~~~~~~~~~~~~~~~-~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~gv-------- 235 (333)
.|..+|........+. +..++ .+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.+++
T Consensus 163 ~f~~~m~~~~~~~~~~-~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~ 241 (352)
T 1fp2_A 163 SFNDAMASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMF 241 (352)
T ss_dssp HHHHHHHHTHHHHHHH-HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTT
T ss_pred HHHHHHHhcchhhhhH-HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcEEEecccc
Confidence 9999999988876666 67672 2778899999999999999999999999999999999999988864322
Q ss_pred ------------EEEccCChhHHHHHHHHHHHhCCC---CcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcC
Q 035738 236 ------------WILHDWNDEHCLKLLKNCYKSIPE---DGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKER 300 (333)
Q Consensus 236 ------------~vLh~~~~~~~~~lL~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~r 300 (333)
++||+|+++++.++|++++++|+| ||+++|.|...++....+........+++.|+. . +|+.|
T Consensus 242 ~~~p~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-~-~g~~~ 319 (352)
T 1fp2_A 242 TSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-L-NGKER 319 (352)
T ss_dssp TCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-G-TCCCE
T ss_pred CCCCCccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHh-c-cCCCC
Confidence 889999999999999999999999 999999999887643221001123456777765 3 58899
Q ss_pred CHHHHHHHHHhCCCCeeEEeecCCceeEEEEeC
Q 035738 301 TRHEFMTLATGAGFSGISCERAIGNLWVMEFYK 333 (333)
Q Consensus 301 t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 333 (333)
+.++|.++|+++||+.+++++.++..++||++|
T Consensus 320 t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 352 (352)
T 1fp2_A 320 NEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352 (352)
T ss_dssp EHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred CHHHHHHHHHHCCCCeeEEEecCCCcEEEEEeC
Confidence 999999999999999999999888889999987
No 10
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=100.00 E-value=6.6e-45 Score=334.10 Aligned_cols=299 Identities=21% Similarity=0.325 Sum_probs=261.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCC
Q 035738 11 QSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDAS 90 (333)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~ 90 (333)
.+...|++++.|++.+++|++++++|||+.|.+ ||.|++|||+++|+ +++.++||||+|++.|+++++
T Consensus 7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~----~~~t~~ela~~~~~----~~~~l~r~Lr~L~~~g~l~~~---- 74 (334)
T 2ip2_A 7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIES----GIDSDETLAAAVGS----DAERIHRLMRLLVAFEIFQGD---- 74 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT----TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCceEec----
Confidence 677899999999999999999999999999986 59999999999999 999999999999999999987
Q ss_pred CccccccccccccccccCCCCCChhhhHhhccChhhHHhhhhhHHHHhcCCChhhhhcCCChhhhhcCCchhHHHHHHHH
Q 035738 91 GARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVM 170 (333)
Q Consensus 91 ~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m 170 (333)
+++.|++|+.+..+. +. +.++++++.+...+.+ ..|.+|.++++++.++|+..+|.++|+++.++|+....|+++|
T Consensus 75 -~~~~y~~t~~s~~l~-~~-~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m 150 (334)
T 2ip2_A 75 -TRDGYANTPTSHLLR-DV-EGSFRDMVLFYGEEFH-AAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAM 150 (334)
T ss_dssp -TTTEEEECHHHHTTS-SS-TTCSHHHHHHHTTHHH-HHTTTHHHHHHHCCCHHHHHHSSCHHHHHHHCHHHHHHHHHHH
T ss_pred -CCCeEecCHHHHHHh-CC-CccHHHHHHHhcCchh-hHHHHHHHHHhcCCChhhhhcCCCHHHHHhhChHHHHHHHHHH
Confidence 357999999998877 43 3478888877655444 8999999999999999998889889999999999999999999
Q ss_pred hhhhhhhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC------------------
Q 035738 171 YNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH------------------ 232 (333)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~------------------ 232 (333)
..+....+.+++.++ +++ .+|||||||+|..+..+++++|+.+++++|+|.+++.+++.
T Consensus 151 -~~~~~~~~~~~~~~~-~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 227 (334)
T 2ip2_A 151 -KASNLAFHEIPRLLD-FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDML 227 (334)
T ss_dssp -GGGHHHHHHHHHHSC-CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTT
T ss_pred -HHHHHHHHHHHHhCC-CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCC
Confidence 888877888888887 777 99999999999999999999999999999998787765431
Q ss_pred ---C---Ce----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCH
Q 035738 233 ---P---CM----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTR 302 (333)
Q Consensus 233 ---~---gv----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~ 302 (333)
+ ++ ++||+|+++++.++|++++++|+|||+++|.|...++.... .....+++.|+... +|+.|+.
T Consensus 228 ~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~t~ 302 (334)
T 2ip2_A 228 QEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPS----PMSVLWDVHLFMAC-AGRHRTT 302 (334)
T ss_dssp TCCCSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCC----HHHHHHHHHHHHHH-SCCCCBH
T ss_pred CCCCCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc----chhHHhhhHhHhhC-CCcCCCH
Confidence 1 11 88999999999999999999999999999999987764321 23456677777654 7899999
Q ss_pred HHHHHHHHhCCCCeeEEeecCCceeEEEEeC
Q 035738 303 HEFMTLATGAGFSGISCERAIGNLWVMEFYK 333 (333)
Q Consensus 303 ~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 333 (333)
++|.++|+++||+.+++++.++..++||++|
T Consensus 303 ~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 333 (334)
T 2ip2_A 303 EEVVDLLGRGGFAVERIVDLPMETRMIVAAR 333 (334)
T ss_dssp HHHHHHHHHTTEEEEEEEEETTTEEEEEEEE
T ss_pred HHHHHHHHHCCCceeEEEECCCCCEEEEEEe
Confidence 9999999999999999999988899999986
No 11
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=100.00 E-value=1.3e-42 Score=322.18 Aligned_cols=306 Identities=16% Similarity=0.181 Sum_probs=242.8
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 7 GERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
.+-++...++++++.|++.+++|++++++||||.|++.+ ||.|++|||+++|+ +++.++||||+|++.|+|+++
T Consensus 10 ~~~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~--~~~t~~eLA~~~g~----~~~~l~rlLr~l~~~g~l~~~ 83 (363)
T 3dp7_A 10 CTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKR--EGYTLQEISGRTGL----TRYAAQVLLEASLTIGTILLE 83 (363)
T ss_dssp CCSTTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCT--TCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcC--CCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCeEec
Confidence 455678889999999999999999999999999999842 59999999999999 999999999999999999885
Q ss_pred ccCCCccccccccccccccccCCCCCChhhhHhhccChhhHHhhhhhHHHHhcCCChhhhhcC--CChhhhhcCCchhHH
Q 035738 87 LDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAILEGGIPFNRAHG--MHTFEYAGLDPGFNK 164 (333)
Q Consensus 87 ~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g--~~~~~~~~~~~~~~~ 164 (333)
+++|++|+.+..|..++. ...++.+. .+..++.|.+|++++++|.+++...+| .++|+++.++|+..+
T Consensus 84 ------~~~y~~t~~s~~L~~~~~---~~~~~~~~-~~~~~~~~~~L~~~lr~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 153 (363)
T 3dp7_A 84 ------EDRYVLAKAGWFLLNDKM---ARVNMEFN-HDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQ 153 (363)
T ss_dssp ------TTEEEECHHHHHHHHCHH---HHHHHHHH-HHTTHHHHTTHHHHHHHSSCGGGGGTCCCSSHHHHGGGSCHHHH
T ss_pred ------CCEEecccchHHhhCCCc---ccchheee-cHHhhhhHHHHHHHHhcCCCccccccCchHhHHHHHhhCHHHHH
Confidence 689999999987776542 12223332 355788999999999999988888888 689999999998665
Q ss_pred ----HHHHHHhhhhhhhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC--------
Q 035738 165 ----HFNTVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH-------- 232 (333)
Q Consensus 165 ----~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------- 232 (333)
.|+.+|..... ..++..+. ..+..+|||||||+|.++..+++++|+++++++|+|.+++.++++
T Consensus 154 ~~~~~f~~~~~~~~~---~~~l~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~ 229 (363)
T 3dp7_A 154 KSWFGFDHFYSDQSF---GKALEIVF-SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSE 229 (363)
T ss_dssp HHHHHHHHHTTCCCC---HHHHHHHG-GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGG
T ss_pred HHHHHHHHHhhhhhH---HHHHHHhc-ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCccc
Confidence 36666654332 23444443 356789999999999999999999999999999998887765421
Q ss_pred ----------------CC---e----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccc-cccccchhh
Q 035738 233 ----------------PC---M----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIE-SKSNSDSDV 288 (333)
Q Consensus 233 ----------------~g---v----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~-~~~~~~~d~ 288 (333)
|+ + ++||+|+++++.++|++++++|+|||+|+|+|.+.++....... .......++
T Consensus 230 ~v~~~~~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~ 309 (363)
T 3dp7_A 230 RIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYF 309 (363)
T ss_dssp GEEEEECCCCSSSCCCCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHH
T ss_pred ceEEEEccccccCCCCCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhH
Confidence 11 1 78999999999999999999999999999999988764321100 000112233
Q ss_pred HHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeecC-CceeEEEEeC
Q 035738 289 LMMIQSPGGKERTRHEFMTLATGAGFSGISCERAI-GNLWVMEFYK 333 (333)
Q Consensus 289 ~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~~ 333 (333)
.|+.. .+++.|+.++|.++|+++||+++++++.. .++++|++.|
T Consensus 310 ~~~~~-~~~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~~ 354 (363)
T 3dp7_A 310 TAMAN-GNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCRL 354 (363)
T ss_dssp HHSSC-SSCCSCCHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEEE
T ss_pred HhhhC-CCCcccCHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEee
Confidence 33332 46789999999999999999999998765 5589999874
No 12
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=100.00 E-value=3.6e-42 Score=320.56 Aligned_cols=305 Identities=20% Similarity=0.336 Sum_probs=258.4
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeecc
Q 035738 9 RDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLD 88 (333)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~ 88 (333)
..+.+..|++++.+++.+++|++++++|||+.|.+ ||.|++|||+++|+ +++.++||||+|++.|++++.
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~eLA~~~g~----~~~~l~r~Lr~L~~~Gll~~~-- 82 (374)
T 1qzz_A 13 TDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA----GADTLAGLADRTDT----HPQALSRLVRHLTVVGVLEGG-- 82 (374)
T ss_dssp CHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT----TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEECC--
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCEEEe--
Confidence 56788899999999999999999999999999975 59999999999999 999999999999999999985
Q ss_pred CCCccc--cccccccccccccCCCCCChhhhHhhccChhhH-HhhhhhHHHHhcCCChhhhhcCCChhhhhcCCchhHHH
Q 035738 89 ASGARR--LYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFL-ECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKH 165 (333)
Q Consensus 89 ~~~~~~--~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~ 165 (333)
.++ .|.+|+.+..+..+.. .++.+++.+...+..+ ..|.+|.+.++++.++|+..+|.++|+++.++|+....
T Consensus 83 ---~~~~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 158 (374)
T 1qzz_A 83 ---EKQGRPLRPTRLGMLLADGHP-AQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADS 158 (374)
T ss_dssp ---CC-CCCCEECTTGGGGSTTCT-TCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHH
T ss_pred ---CCCCeEEEEChHHHhhcCCCc-ccHHHHHHHcCChhhHHHHHHHHHHHHhcCCChhhhhhCCCHHHHHhhChHHHHH
Confidence 245 8999999987776543 4788888765434456 78999999999999999988898999999999999999
Q ss_pred HHHHHhhhhhhhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC-------------
Q 035738 166 FNTVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH------------- 232 (333)
Q Consensus 166 f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~------------- 232 (333)
|..+|........+.+++.++ +.+..+|||||||+|.++..+++++|+++++++|++.+++.+++.
T Consensus 159 f~~~~~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~ 237 (374)
T 1qzz_A 159 FDALMSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVA 237 (374)
T ss_dssp HHHTCGGGSTTTTHHHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred HHHHHHHhhHhHHHHHHHhCC-CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEE
Confidence 999999888777788888877 788899999999999999999999999999999998888766431
Q ss_pred --------CC-e------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEee--ecCCCCCCccccccccchhhHHHhhCC
Q 035738 233 --------PC-M------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVEL--MLPEVPNTSIESKSNSDSDVLMMIQSP 295 (333)
Q Consensus 233 --------~g-v------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~--~~~~~~~~~~~~~~~~~~d~~m~~~~~ 295 (333)
+. . ++||+|+++++.++|++++++|+|||+++|.|. ..++... ......+++.|+.. .
T Consensus 238 ~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~----~~~~~~~~~~~~~~-~ 312 (374)
T 1qzz_A 238 EGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGAD----RFFSTLLDLRMLTF-M 312 (374)
T ss_dssp ECCTTSCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-----------HHHHHHHHHHHHHH-H
T ss_pred eCCCCCcCCCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCC----cchhhhcchHHHHh-C
Confidence 11 1 788999999989999999999999999999999 7655321 12234567777655 3
Q ss_pred CCCcCCHHHHHHHHHhCCCCeeEEeecCCce-----eEEEEeC
Q 035738 296 GGKERTRHEFMTLATGAGFSGISCERAIGNL-----WVMEFYK 333 (333)
Q Consensus 296 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~-----~vie~~~ 333 (333)
+++.++.++|.++|+++||+++++++.++.. ++|+++|
T Consensus 313 ~~~~~~~~~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (374)
T 1qzz_A 313 GGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 355 (374)
T ss_dssp SCCCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred CCcCCCHHHHHHHHHHCCCceEEEEECCCCcccCCcEEEEEEE
Confidence 7899999999999999999999999988777 8999874
No 13
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=100.00 E-value=2.1e-41 Score=313.94 Aligned_cols=303 Identities=18% Similarity=0.295 Sum_probs=259.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCC
Q 035738 11 QSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDAS 90 (333)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~ 90 (333)
...+++++++.+++.+++|+++.++|||+.|.+ ||.|++|||+++|+ +++.++|+|++|++.|+|++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~~~~~---- 85 (360)
T 1tw3_A 18 IDALRTLIRLGSLHTPMVVRTAATLRLVDHILA----GARTVKALAARTDT----RPEALLRLIRHLVAIGLLEED---- 85 (360)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT----TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----
T ss_pred cchHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEec----
Confidence 456888999999999999999999999999975 59999999999999 999999999999999999986
Q ss_pred CccccccccccccccccCCCCCChhhhHhhccChh-hHHhhhhhHHHHhcCCChhhhhcCCChhhhhcCCchhHHHHHHH
Q 035738 91 GARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKV-FLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTV 169 (333)
Q Consensus 91 ~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~ 169 (333)
.++.|++|+.+..+..+.+ .++.+++.+...+. .+..|.+|.+.+++|.++++..+|.++|+++.++|+....|..+
T Consensus 86 -~~g~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~p~~~~~f~~~ 163 (360)
T 1tw3_A 86 -APGEFVPTEVGELLADDHP-AAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSL 163 (360)
T ss_dssp -ETTEEEECTTGGGGSTTST-TCHHHHTCTTSHHHHHGGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHHHH
T ss_pred -CCCeEEeCHHHHHHhcCCc-hhHHHHHHHhcCchhHHHHHHHHHHHHHcCCCHHHHhcCCCHHHHHHhChHHHHHHHHH
Confidence 3678999999887776543 57888777654333 56789999999999998888888988999999999999999999
Q ss_pred HhhhhhhhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC------C-Ce-------
Q 035738 170 MYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH------P-CM------- 235 (333)
Q Consensus 170 m~~~~~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~------~-gv------- 235 (333)
|........+.+++.++ +.+..+|||||||+|.++..+++++|+++++++|++.+++.++++ . ++
T Consensus 164 ~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 242 (360)
T 1tw3_A 164 LACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDF 242 (360)
T ss_dssp HTTTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred HHHHHHHhHHHHHHhCC-CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCC
Confidence 99888877788888887 788899999999999999999999999999999998777765431 0 11
Q ss_pred --------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeee-cCCCCCCccccccccchhhHHHhhCCCCCcC
Q 035738 236 --------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELM-LPEVPNTSIESKSNSDSDVLMMIQSPGGKER 300 (333)
Q Consensus 236 --------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~-~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~r 300 (333)
++||+|+++++.++|++++++|+|||+++|.|.. .++.... .....+++.|+... +++.+
T Consensus 243 ~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~ 317 (360)
T 1tw3_A 243 FEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFN----EQFTELDLRMLVFL-GGALR 317 (360)
T ss_dssp TSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCS----HHHHHHHHHHHHHH-SCCCC
T ss_pred CCCCCCCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCc----chhhhccHHHhhhc-CCcCC
Confidence 7889999999899999999999999999999998 6543221 12345677776553 78999
Q ss_pred CHHHHHHHHHhCCCCeeEEeecCCc-----eeEEEEeC
Q 035738 301 TRHEFMTLATGAGFSGISCERAIGN-----LWVMEFYK 333 (333)
Q Consensus 301 t~~e~~~ll~~aGf~~~~~~~~~~~-----~~vie~~~ 333 (333)
+.++|.++|+++||+++++++.++. .++|+++|
T Consensus 318 t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (360)
T 1tw3_A 318 TREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP 355 (360)
T ss_dssp BHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred CHHHHHHHHHHCCCeEEEEEeCCCCcccCccEEEEEEe
Confidence 9999999999999999999988765 78999875
No 14
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=100.00 E-value=4.3e-41 Score=310.89 Aligned_cols=302 Identities=14% Similarity=0.211 Sum_probs=249.7
Q ss_pred CCcCchhhhHHHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhccc
Q 035738 2 DSIVDGERDQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYS 81 (333)
Q Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g 81 (333)
.++.|.+++++...+++++.|++.+++|++|+++|||+.|.+ |.|++|||+++|+ +++.++||||+|++.|
T Consensus 14 ~~~~~~~~l~~p~~l~~~~~~~~~~~~l~~a~~lgif~~l~~-----~~t~~elA~~~~~----~~~~l~rlLr~L~~~g 84 (352)
T 3mcz_A 14 ESTEDKAALTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQT-----GRTPAEVAASFGM----VEGKAAILLHALAALG 84 (352)
T ss_dssp SCCCSCCCCCSHHHHHHHHHTHHHHHHHHHHHHTTHHHHTTS-----CBCHHHHHHHHTC----CHHHHHHHHHHHHHTT
T ss_pred HhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCChHHHhCC-----CCCHHHHHHHhCc----ChHHHHHHHHHHHHCC
Confidence 357788899999999999999999999999999999999964 8999999999999 9999999999999999
Q ss_pred ceeeeccCCCccccccccccccccccCCCCCChhhhHhhccChhhHHhhhhhHHHHhcCCCh-hhhhcCCChhhhhcCCc
Q 035738 82 VVECSLDASGARRLYSLNSVSKYYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAILEGGIP-FNRAHGMHTFEYAGLDP 160 (333)
Q Consensus 82 ~l~~~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~-~~~~~g~~~~~~~~~~~ 160 (333)
+++++ ++.|.+|+.+..++.++.+.+++.++.+. ...++.|.+|.+++++|.+. |+. ..++.++|
T Consensus 85 ll~~~------~~~y~~t~~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~------~~~~~~~~ 150 (352)
T 3mcz_A 85 LLTKE------GDAFRNTALTERYLTTTSADYIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQ------ESRFAHDT 150 (352)
T ss_dssp SEEEE------TTEEEECHHHHHHHSTTCTTCCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSH------HHHTTTCH
T ss_pred CeEec------CCeeecCHHHHhhccCCChhhHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCccc------ccccccCH
Confidence 99987 57899999998766555556788777653 34678899999999998653 222 12346788
Q ss_pred hhHHHHHHHHhhhhhhhHHHHHhhccCCCC-CCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC-------
Q 035738 161 GFNKHFNTVMYNYTSLVMSNILESYKGFDN-IKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH------- 232 (333)
Q Consensus 161 ~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~-~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~------- 232 (333)
+....|..+|...... ...+++.++ +.+ ..+|||||||+|.++..+++++|+++++++|+|.+++.+++.
T Consensus 151 ~~~~~f~~~m~~~~~~-~~~~l~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~ 228 (352)
T 3mcz_A 151 RARDAFNDAMVRLSQP-MVDVVSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLG 228 (352)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHTCG-GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHhhhhh-HHHHHHhCC-CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCC
Confidence 8899999999884433 346778777 666 899999999999999999999999999999998887655421
Q ss_pred -------------C-----Ce------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhh
Q 035738 233 -------------P-----CM------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDV 288 (333)
Q Consensus 233 -------------~-----gv------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~ 288 (333)
+ +. ++||+|+++++.++|++++++|+|||+++|.|.+.++....+ .....+++
T Consensus 229 ~~v~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~---~~~~~~~~ 305 (352)
T 3mcz_A 229 GRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTP---ALSADFSL 305 (352)
T ss_dssp GGEEEEECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSS---HHHHHHHH
T ss_pred CceEEEeCCcccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCC---chHHHhhH
Confidence 0 01 889999999999999999999999999999999887754322 23456788
Q ss_pred HHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeecCCceeEEEEeC
Q 035738 289 LMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK 333 (333)
Q Consensus 289 ~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 333 (333)
.|+..+.+++.++.++|.++|+++||++++.. .+.++++.++|
T Consensus 306 ~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~--~g~~~l~~a~k 348 (352)
T 3mcz_A 306 HMMVNTNHGELHPTPWIAGVVRDAGLAVGERS--IGRYTLLIGQR 348 (352)
T ss_dssp HHHHHSTTCCCCCHHHHHHHHHHTTCEEEEEE--ETTEEEEEEEC
T ss_pred HHHhhCCCCCcCCHHHHHHHHHHCCCceeeec--cCceEEEEEec
Confidence 88765568999999999999999999998843 35577777765
No 15
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=100.00 E-value=6.9e-41 Score=307.28 Aligned_cols=294 Identities=17% Similarity=0.198 Sum_probs=250.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcc
Q 035738 14 AYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGAR 93 (333)
Q Consensus 14 ~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~ 93 (333)
+.+++++.|++.+++|++++++|||+.|++ ||.|++|||+++|+ +++.++|||++|++.|+|++. +
T Consensus 8 ~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~l~~~------~ 73 (335)
T 2r3s_A 8 ALFFNTVNAYQRSAAIKAAVELNVFTAISQ----GIESSQSLAQKCQT----SERGMRMLCDYLVIIGFMTKQ------A 73 (335)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTTHHHHHTT----SEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE------T
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHhc----CCCCHHHHHHHhCC----CchHHHHHHHHHHhcCCeEec------C
Confidence 678999999999999999999999999997 49999999999999 999999999999999999875 6
Q ss_pred cccccccccc-ccccCCCCCChhhhHhhccChhhHHhhhhhHHHHhcCCChhhhhcCCChhhhhcCCchhHHHHHHHHhh
Q 035738 94 RLYSLNSVSK-YYVPNKDGVSLGPGIQITHDKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYN 172 (333)
Q Consensus 94 ~~y~~t~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~ 172 (333)
+.|++|+.+. .+..+. +.++++++.+...+..+..|.+|.++++++.++|+ . |+++.++++....|...|..
T Consensus 74 ~~y~~t~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~ 146 (335)
T 2r3s_A 74 EGYRLTSDSAMFLDRQS-KFYVGDAIEFLLSPMITNGFNDLTAAVLKGGTAIS-----S-EGTLSPEHPVWVQFAKAMSP 146 (335)
T ss_dssp TEEEECHHHHHHTCTTS-TTCCGGGHHHHTCHHHHGGGTTHHHHHHHTSCCST-----T-TGGGSTTCTHHHHHHHHSGG
T ss_pred CEEecCHHHHHHhccCC-cHHHHHHHHHhcchhhHHHHHhHHHHHhcCCCCCC-----C-cccccCCHHHHHHHHHHHHH
Confidence 8999999994 555443 35788888876555678899999999999887654 2 78888899999999999998
Q ss_pred hhhhhHHHHHhhccCC--CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC------------------
Q 035738 173 YTSLVMSNILESYKGF--DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH------------------ 232 (333)
Q Consensus 173 ~~~~~~~~~~~~~~~~--~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~------------------ 232 (333)
........+++.++ + .+..+|||||||+|.++..+++++|+.+++++|++.+++.+++.
T Consensus 147 ~~~~~~~~~~~~~~-~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 225 (335)
T 2r3s_A 147 MMANPAQLIAQLVN-ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAF 225 (335)
T ss_dssp GGHHHHHHHHHHHT-C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTT
T ss_pred HHhhhHHHHHHhcc-cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccc
Confidence 88887788888887 6 78899999999999999999999999999999998777655431
Q ss_pred ----CC-e------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCC
Q 035738 233 ----PC-M------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERT 301 (333)
Q Consensus 233 ----~g-v------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt 301 (333)
++ . +++|+|+++++.++|++++++|+|||+++|+|...++....+ .....+++.|+....+++.++
T Consensus 226 ~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~t 302 (335)
T 2r3s_A 226 EVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITP---PDAAAFSLVMLATTPNGDAYT 302 (335)
T ss_dssp TSCCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCS---HHHHHHHHHHHHHSSSCCCCC
T ss_pred cCCCCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCc---hHHHHHHHHHHeeCCCCCcCC
Confidence 11 1 788999999999999999999999999999999877643221 233566777776655789999
Q ss_pred HHHHHHHHHhCCCCeeEEeecCCceeEEEEe
Q 035738 302 RHEFMTLATGAGFSGISCERAIGNLWVMEFY 332 (333)
Q Consensus 302 ~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~ 332 (333)
.++|.++|+++||+.+++.+..+..++|+++
T Consensus 303 ~~~~~~ll~~aGf~~~~~~~~~~~~~~i~~~ 333 (335)
T 2r3s_A 303 FAEYESMFSNAGFSHSQLHSLPTTQQQVIVA 333 (335)
T ss_dssp HHHHHHHHHHTTCSEEEEECCTTSSSEEEEE
T ss_pred HHHHHHHHHHCCCCeeeEEECCCCceeEEEe
Confidence 9999999999999999999988888877765
No 16
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=100.00 E-value=1.7e-40 Score=307.77 Aligned_cols=295 Identities=17% Similarity=0.281 Sum_probs=246.0
Q ss_pred chhhhHHHHHHHHHHh-hhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhccccee
Q 035738 6 DGERDQSFAYANQLAR-GIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVE 84 (333)
Q Consensus 6 ~~~~~~~~~~l~~~~~-~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~ 84 (333)
+.+.++...++++++. |++.+++|++++++|||+.|++ ||.|++|||+++|+ +++.++||||+|++.|+|+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~----~~~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~ 95 (359)
T 1x19_A 24 NNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE----GPKDLATLAADTGS----VPPRLEMLLETLRQMRVIN 95 (359)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEE
T ss_pred ccccCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC----CCCCHHHHHHHhCc----ChHHHHHHHHHHHhCCCeE
Confidence 3456778888899986 8999999999999999999987 49999999999999 9999999999999999999
Q ss_pred eeccCCCccccccccccccccccCCCC---CChhhhHhhccChhhHHhhhhhHHHHhcCCChhhhhcCCChhhhhcCCch
Q 035738 85 CSLDASGARRLYSLNSVSKYYVPNKDG---VSLGPGIQITHDKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPG 161 (333)
Q Consensus 85 ~~~~~~~~~~~y~~t~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g~~~~~~~~~~~~ 161 (333)
++ ++.|++|+.+..++.++++ .++++++.+. ...+++.|.+|+++++++.+ |+++.++|+
T Consensus 96 ~~------~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~~----------~~~~~~~p~ 158 (359)
T 1x19_A 96 LE------DGKWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQKN----------FKGQVPYPP 158 (359)
T ss_dssp EE------TTEEEECHHHHHHSSSSCSBTTBCCHHHHHHH-HHHHHHTGGGHHHHHTTSCC----------CCCSSCSSC
T ss_pred ee------CCeEecCHHHHHHhcCCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHhcCCC----------CcccccCch
Confidence 86 5699999976655444433 4788887765 35678899999999998763 566777888
Q ss_pred ---hHHHHHHHHhhhhh-hhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC-----
Q 035738 162 ---FNKHFNTVMYNYTS-LVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH----- 232 (333)
Q Consensus 162 ---~~~~f~~~m~~~~~-~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~----- 232 (333)
....|..+|..... ...+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.++++
T Consensus 159 ~~~~~~~f~~~m~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~ 237 (359)
T 1x19_A 159 VTREDNLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKG 237 (359)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHCC-CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHhccchhHHHHHHhcC-CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcC
Confidence 88999999999888 77888888887 888899999999999999999999999999999998888766531
Q ss_pred -C------------------Ce----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhH
Q 035738 233 -P------------------CM----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVL 289 (333)
Q Consensus 233 -~------------------gv----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~ 289 (333)
+ ++ ++||+|+++++.++|++++++|+|||+++|+|...++. ..+. ....+ .
T Consensus 238 ~~~~v~~~~~d~~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~~~---~~~~~--~ 311 (359)
T 1x19_A 238 VADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDP-ENPN---FDYLS--H 311 (359)
T ss_dssp CTTTEEEEECCTTTSCCCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCT-TSCC---HHHHH--H
T ss_pred CCCCEEEEeCccccCCCCCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCC-CCch---HHHHH--H
Confidence 1 11 88999999889999999999999999999999987764 2111 11222 3
Q ss_pred HHhhCCCCCc----CCHHHHHHHHHhCCCCeeEEeecCCceeEEEEeC
Q 035738 290 MMIQSPGGKE----RTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK 333 (333)
Q Consensus 290 m~~~~~~g~~----rt~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 333 (333)
|+....+++. ++.++|.++|+++||+.+++++.+ ..++|+++|
T Consensus 312 ~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~-~~~vi~a~k 358 (359)
T 1x19_A 312 YILGAGMPFSVLGFKEQARYKEILESLGYKDVTMVRKY-DHLLVQAVK 358 (359)
T ss_dssp HGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEEEEEEET-TEEEEEEEC
T ss_pred HHHhcCCCCcccCCCCHHHHHHHHHHCCCceEEEEecC-CceEEEEeC
Confidence 3332335777 999999999999999999999987 788999886
No 17
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=99.71 E-value=4.9e-17 Score=143.33 Aligned_cols=144 Identities=17% Similarity=0.118 Sum_probs=100.6
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHC--CCCeEEEeec-hhHhhhCCCC-------CCe---------------------E
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKY--PYIKGINFDL-PHVIEHVPPH-------PCM---------------------W 236 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~-------~gv---------------------~ 236 (333)
..++.+|||||||+|..+..+++++ |+++++++|+ +.+++.|+++ .++ .
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~ 147 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 147 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence 5578899999999999999999975 6789999999 8899887642 111 6
Q ss_pred EEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCcccccccc-chhhHHH-------------hhCCCCCcCCH
Q 035738 237 ILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNS-DSDVLMM-------------IQSPGGKERTR 302 (333)
Q Consensus 237 vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~-~~d~~m~-------------~~~~~g~~rt~ 302 (333)
+||++++++..++|++++++|+|||++++.|...+++.... ..... ..++... ....--...+.
T Consensus 148 ~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~--~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s~ 225 (261)
T 4gek_A 148 TLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVG--ELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSV 225 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHH--HHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBCH
T ss_pred eeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHH--HHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCCH
Confidence 78899988888999999999999999999999876542110 00000 0000000 00000134688
Q ss_pred HHHHHHHHhCCCCeeEEeecCCceeEEEEeC
Q 035738 303 HEFMTLATGAGFSGISCERAIGNLWVMEFYK 333 (333)
Q Consensus 303 ~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 333 (333)
+++.++|++|||+.++++-....+.-+.++|
T Consensus 226 ~~~~~~L~~AGF~~ve~~fq~~nF~~~iA~K 256 (261)
T 4gek_A 226 ETHKARLHKAGFEHSELWFQCFNFGSLVALK 256 (261)
T ss_dssp HHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHcCCCeEEEEEEeccEEEEEEEE
Confidence 9999999999999999864433333333444
No 18
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=99.65 E-value=1.4e-15 Score=131.54 Aligned_cols=153 Identities=19% Similarity=0.174 Sum_probs=107.9
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----CCe------------------
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----PCM------------------ 235 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~gv------------------ 235 (333)
..+...+....+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++. +++
T Consensus 33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 112 (234)
T 3dtn_A 33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDM 112 (234)
T ss_dssp HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEE
T ss_pred HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceE
Confidence 34444444345678999999999999999999999999999999 8887766432 111
Q ss_pred ----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhh-----------HH-HhhCCCCCc
Q 035738 236 ----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDV-----------LM-MIQSPGGKE 299 (333)
Q Consensus 236 ----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~-----------~m-~~~~~~g~~ 299 (333)
.++|++++++..++|++++++|+|||++++.+...++....... ....+... .. .........
T Consensus 113 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (234)
T 3dtn_A 113 VVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENL-NKTIWRQYVENSGLTEEEIAAGYERSKLDKD 191 (234)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHH-HHHHHHHHHHTSSCCHHHHHTTC----CCCC
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhH-HHHHHHHHHHhcCCCHHHHHHHHHhcccccc
Confidence 77888998887789999999999999999999877653210000 00000000 00 000012345
Q ss_pred CCHHHHHHHHHhCCCCeeEEeecCCceeEEEEe
Q 035738 300 RTRHEFMTLATGAGFSGISCERAIGNLWVMEFY 332 (333)
Q Consensus 300 rt~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~ 332 (333)
++.++|.++|++|||+.++++.....++++-.+
T Consensus 192 ~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~ 224 (234)
T 3dtn_A 192 IEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGR 224 (234)
T ss_dssp CBHHHHHHHHHHTTCEEEEEEEEETTEEEEEEE
T ss_pred cCHHHHHHHHHHcCCCceeeeeeecceeEEEEE
Confidence 689999999999999999998887777766544
No 19
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=99.54 E-value=1.5e-14 Score=123.70 Aligned_cols=135 Identities=13% Similarity=0.135 Sum_probs=103.1
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCCCC------CCe---------------
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVPPH------PCM--------------- 235 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~gv--------------- 235 (333)
..++..++ .....+|||||||+|.++..+++.. |..+++++|+ +.+++.+++. +++
T Consensus 27 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~ 105 (219)
T 3dh0_A 27 EKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDN 105 (219)
T ss_dssp HHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSS
T ss_pred HHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCC
Confidence 45555555 6778899999999999999999987 8889999999 7887766432 111
Q ss_pred --------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHH
Q 035738 236 --------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMT 307 (333)
Q Consensus 236 --------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ 307 (333)
.++|++++. ..+|++++++|+|||++++.+.......... .....++.++|.+
T Consensus 106 ~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 166 (219)
T 3dh0_A 106 TVDFIFMAFTFHELSEP--LKFLEELKRVAKPFAYLAIIDWKKEERDKGP-----------------PPEEVYSEWEVGL 166 (219)
T ss_dssp CEEEEEEESCGGGCSSH--HHHHHHHHHHEEEEEEEEEEEECSSCCSSSC-----------------CGGGSCCHHHHHH
T ss_pred CeeEEEeehhhhhcCCH--HHHHHHHHHHhCCCeEEEEEEecccccccCC-----------------chhcccCHHHHHH
Confidence 667777655 4899999999999999999998655431110 0122357999999
Q ss_pred HHHhCCCCeeEEeecCCceeEEEEeC
Q 035738 308 LATGAGFSGISCERAIGNLWVMEFYK 333 (333)
Q Consensus 308 ll~~aGf~~~~~~~~~~~~~vie~~~ 333 (333)
+++++||+++++.........+.+.|
T Consensus 167 ~l~~~Gf~~~~~~~~~~~~~~~~~~k 192 (219)
T 3dh0_A 167 ILEDAGIRVGRVVEVGKYCFGVYAMI 192 (219)
T ss_dssp HHHHTTCEEEEEEEETTTEEEEEEEC
T ss_pred HHHHCCCEEEEEEeeCCceEEEEEEe
Confidence 99999999999988877666665553
No 20
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=99.52 E-value=3.7e-14 Score=121.30 Aligned_cols=148 Identities=12% Similarity=0.123 Sum_probs=97.6
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-C----------------C---e---
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-P----------------C---M--- 235 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~----------------g---v--- 235 (333)
.+++.+. ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. + + +
T Consensus 36 ~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 112 (220)
T 3hnr_A 36 DILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVS 112 (220)
T ss_dssp HHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEE
T ss_pred HHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEE
Confidence 3444443 446789999999999999999987 568999999 7777665421 0 1 1
Q ss_pred -EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhH--HHhhCCCCCcCCHHHHHHHHHhC
Q 035738 236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVL--MMIQSPGGKERTRHEFMTLATGA 312 (333)
Q Consensus 236 -~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~--m~~~~~~g~~rt~~e~~~ll~~a 312 (333)
.++|++++++...+|++++++|+|||++++.++..+................+. .... .....++.++|.++|+++
T Consensus 113 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~a 191 (220)
T 3hnr_A 113 TYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDL-QTEYYTRIPVMQTIFENN 191 (220)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHH-HHSCCCBHHHHHHHHHHT
T ss_pred CcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhc-chhhcCCHHHHHHHHHHC
Confidence 778899988877799999999999999999997654421100000000000000 0000 012345889999999999
Q ss_pred CCCeeEEeecCCceeEEEEe
Q 035738 313 GFSGISCERAIGNLWVMEFY 332 (333)
Q Consensus 313 Gf~~~~~~~~~~~~~vie~~ 332 (333)
||+++.+.. ..+..+++..
T Consensus 192 Gf~v~~~~~-~~~~w~~~~~ 210 (220)
T 3hnr_A 192 GFHVTFTRL-NHFVWVMEAT 210 (220)
T ss_dssp TEEEEEEEC-SSSEEEEEEE
T ss_pred CCEEEEeec-cceEEEEeeh
Confidence 997665544 4566666654
No 21
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=99.52 E-value=6.9e-14 Score=119.19 Aligned_cols=142 Identities=14% Similarity=0.084 Sum_probs=95.0
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC--CCe--------------------
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH--PCM-------------------- 235 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~gv-------------------- 235 (333)
..++..+.......+|||||||+|.++..+++. ..+++++|+ +.+++.+++. +++
T Consensus 35 ~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~ 112 (218)
T 3ou2_A 35 PAALERLRAGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVF 112 (218)
T ss_dssp HHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEE
T ss_pred HHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEE
Confidence 344454443556679999999999999999998 568999999 8888877642 111
Q ss_pred --EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCC-------CCcCCHHHHH
Q 035738 236 --WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPG-------GKERTRHEFM 306 (333)
Q Consensus 236 --~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~-------g~~rt~~e~~ 306 (333)
.++|+++++....+|+++++.|+|||++++.+...+.......... ....... ..... ....+.++|.
T Consensus 113 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 189 (218)
T 3ou2_A 113 FAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDS--EPEVAVR-RTLQDGRSFRIVKVFRSPAELT 189 (218)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC--------------CEEE-EECTTSCEEEEECCCCCHHHHH
T ss_pred EechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhc--cccccee-eecCCcchhhHhhcCCCHHHHH
Confidence 6788999887789999999999999999999987643211100000 0000000 00011 1245899999
Q ss_pred HHHHhCCCCeeEEeecCCc
Q 035738 307 TLATGAGFSGISCERAIGN 325 (333)
Q Consensus 307 ~ll~~aGf~~~~~~~~~~~ 325 (333)
++|+++||++......+.+
T Consensus 190 ~~l~~aGf~v~~~~~~~~~ 208 (218)
T 3ou2_A 190 ERLTALGWSCSVDEVHPGF 208 (218)
T ss_dssp HHHHHTTEEEEEEEEETTE
T ss_pred HHHHHCCCEEEeeeccccc
Confidence 9999999995544444433
No 22
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.51 E-value=7.5e-15 Score=126.10 Aligned_cols=141 Identities=12% Similarity=0.044 Sum_probs=93.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----CC-----------------e------EEEcc
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----PC-----------------M------WILHD 240 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~g-----------------v------~vLh~ 240 (333)
...+|||||||+|.++..+++..+ +++++|+ +.+++.+++. ++ . .++|.
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 115 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHh
Confidence 478999999999999999999887 8999999 7887765431 11 1 34445
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCcccc---ccccchhhHHH--------hhC-CC-------CCcCC
Q 035738 241 WNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIES---KSNSDSDVLMM--------IQS-PG-------GKERT 301 (333)
Q Consensus 241 ~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~---~~~~~~d~~m~--------~~~-~~-------g~~rt 301 (333)
+..++..++|++++++|+|||++++.++..+......... ....+....+. ... .+ ....+
T Consensus 116 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 195 (227)
T 1ve3_A 116 FEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVWG 195 (227)
T ss_dssp CCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHGGGCCC---------CCEEEEETTTTEEEEEC-----CCEEEEECCC
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEecChHHHHHHHHhhhhcccceeecccccCccccEEEEEeccchhhheeehhhhc
Confidence 5666677999999999999999999988533210000000 00000000000 000 00 01112
Q ss_pred HHHHHHHHHhCCCCeeEEeecCCceeEEEEeC
Q 035738 302 RHEFMTLATGAGFSGISCERAIGNLWVMEFYK 333 (333)
Q Consensus 302 ~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 333 (333)
.+|.++|+++||+.+++...+.+..+|+.+|
T Consensus 196 -~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~ 226 (227)
T 1ve3_A 196 -KTGVELLAKLYFTKEAEEKVGNYSYLTVYNP 226 (227)
T ss_dssp -HHHHHHHHTTTEEEEEEEEETTTEEEEEEEE
T ss_pred -hHHHHHHHHHhhhHHHHHHhCCceeEEeeCC
Confidence 4899999999999999999887778998875
No 23
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=99.51 E-value=4.1e-15 Score=126.77 Aligned_cols=143 Identities=15% Similarity=0.204 Sum_probs=97.3
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe---------------
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM--------------- 235 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv--------------- 235 (333)
..++..++ ..+. +|||||||+|.++..+++. |+.+++++|+ +.+++.+++. +++
T Consensus 34 ~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 110 (219)
T 3dlc_A 34 ENIINRFG-ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDN 110 (219)
T ss_dssp HHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTT
T ss_pred HHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcc
Confidence 34445444 4444 9999999999999999998 8889999999 7887766532 111
Q ss_pred --------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCcccc----ccccchhhHHHhhCCCCCcCCHH
Q 035738 236 --------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIES----KSNSDSDVLMMIQSPGGKERTRH 303 (333)
Q Consensus 236 --------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~----~~~~~~d~~m~~~~~~g~~rt~~ 303 (333)
.++|++++.. ++|++++++|+|||++++.+...+......... ....+..... .....++.+
T Consensus 111 ~~D~v~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 184 (219)
T 3dlc_A 111 YADLIVSRGSVFFWEDVA--TAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNR----KNISQENVE 184 (219)
T ss_dssp CEEEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHH----HHSSHHHHH
T ss_pred cccEEEECchHhhccCHH--HHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhh----hccccCCHH
Confidence 5677776554 899999999999999999886543310000000 0000111000 123345789
Q ss_pred HHHHHHHhCCCCeeEEeecCCceeEEE
Q 035738 304 EFMTLATGAGFSGISCERAIGNLWVME 330 (333)
Q Consensus 304 e~~~ll~~aGf~~~~~~~~~~~~~vie 330 (333)
+|.++|+++||+.+++.....+..++.
T Consensus 185 ~~~~~l~~aGf~~v~~~~~~~~~~~~~ 211 (219)
T 3dlc_A 185 RFQNVLDEIGISSYEIILGDEGFWIII 211 (219)
T ss_dssp HHHHHHHHHTCSSEEEEEETTEEEEEE
T ss_pred HHHHHHHHcCCCeEEEEecCCceEEEE
Confidence 999999999999999998877665543
No 24
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=99.50 E-value=2.9e-13 Score=117.48 Aligned_cols=132 Identities=16% Similarity=0.214 Sum_probs=96.1
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---------------C-C---e---
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---------------P-C---M--- 235 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------~-g---v--- 235 (333)
..+...++.+.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. + + +
T Consensus 30 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~d~~~~~~~~~~~~fD~i~~ 107 (240)
T 3dli_A 30 ARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGKFNVVKSDAIEYLKSLPDKYLDGVMI 107 (240)
T ss_dssp HHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTTSEEECSCHHHHHHTSCTTCBSEEEE
T ss_pred HHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhhcceeeccHHHHhhhcCCCCeeEEEE
Confidence 334444443567789999999999999999987 457899999 7888776542 1 1 1
Q ss_pred -EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCC
Q 035738 236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGF 314 (333)
Q Consensus 236 -~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf 314 (333)
.++|++++++...+|++++++|+|||++++..+..... ....+.. .. ......++.++|.++++++||
T Consensus 108 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~---------~~~~~~~-~~-~~~~~~~~~~~l~~~l~~aGf 176 (240)
T 3dli_A 108 SHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSL---------YSLINFY-ID-PTHKKPVHPETLKFILEYLGF 176 (240)
T ss_dssp ESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSH---------HHHHHHT-TS-TTCCSCCCHHHHHHHHHHHTC
T ss_pred CCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchh---------HHHHHHh-cC-ccccccCCHHHHHHHHHHCCC
Confidence 77888998877899999999999999999987742210 0111111 11 113456789999999999999
Q ss_pred CeeEEeecC
Q 035738 315 SGISCERAI 323 (333)
Q Consensus 315 ~~~~~~~~~ 323 (333)
+++++....
T Consensus 177 ~~~~~~~~~ 185 (240)
T 3dli_A 177 RDVKIEFFE 185 (240)
T ss_dssp EEEEEEEEC
T ss_pred eEEEEEEec
Confidence 999887654
No 25
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=99.49 E-value=1.2e-13 Score=121.43 Aligned_cols=136 Identities=17% Similarity=0.263 Sum_probs=101.7
Q ss_pred HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----CCe-----------------
Q 035738 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----PCM----------------- 235 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~gv----------------- 235 (333)
...+++.++ ..+..+|||||||+|.++..+++++ +.+++++|+ +.+++.+++. +++
T Consensus 44 ~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 121 (266)
T 3ujc_A 44 TKKILSDIE-LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNF 121 (266)
T ss_dssp HHHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCE
T ss_pred HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcE
Confidence 345566665 6778899999999999999999987 679999999 7777765432 111
Q ss_pred ------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHH
Q 035738 236 ------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLA 309 (333)
Q Consensus 236 ------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll 309 (333)
.++|++++++...+|++++++|+|||++++.++..+.... ....+.-.... .+...++.++|.+++
T Consensus 122 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~------~~~~~~~~~~~--~~~~~~~~~~~~~~l 193 (266)
T 3ujc_A 122 DLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKEN------WDDEFKEYVKQ--RKYTLITVEEYADIL 193 (266)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGG------CCHHHHHHHHH--HTCCCCCHHHHHHHH
T ss_pred EEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCccc------chHHHHHHHhc--CCCCCCCHHHHHHHH
Confidence 6788887777789999999999999999999987665111 11111111111 134567899999999
Q ss_pred HhCCCCeeEEeecC
Q 035738 310 TGAGFSGISCERAI 323 (333)
Q Consensus 310 ~~aGf~~~~~~~~~ 323 (333)
+++||+++++....
T Consensus 194 ~~~Gf~~~~~~~~~ 207 (266)
T 3ujc_A 194 TACNFKNVVSKDLS 207 (266)
T ss_dssp HHTTCEEEEEEECH
T ss_pred HHcCCeEEEEEeCC
Confidence 99999999887654
No 26
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=99.48 E-value=1.4e-13 Score=123.74 Aligned_cols=145 Identities=19% Similarity=0.294 Sum_probs=104.8
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------C-Ce---------------
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------P-CM--------------- 235 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-gv--------------- 235 (333)
..++..++ ..+..+|||||||+|.++..+++.++ .+++++|+ +.+++.+++. + ++
T Consensus 62 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD 139 (302)
T 3hem_A 62 KLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVD 139 (302)
T ss_dssp HHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCS
T ss_pred HHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcCCCcc
Confidence 45566665 67788999999999999999999987 79999999 8888776542 1 11
Q ss_pred -----EEEccCCh-------hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCcccc-----ccccchhhHHHhhCCCCC
Q 035738 236 -----WILHDWND-------EHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIES-----KSNSDSDVLMMIQSPGGK 298 (333)
Q Consensus 236 -----~vLh~~~~-------~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~-----~~~~~~d~~m~~~~~~g~ 298 (333)
.++|++++ +....+|++++++|+|||++++.+...++........ ....+.++.....++++.
T Consensus 140 ~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 219 (302)
T 3hem_A 140 RIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGR 219 (302)
T ss_dssp EEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCC
T ss_pred EEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCCC
Confidence 56777744 4567999999999999999999998766431100000 000011222222346778
Q ss_pred cCCHHHHHHHHHhCCCCeeEEeecCCc
Q 035738 299 ERTRHEFMTLATGAGFSGISCERAIGN 325 (333)
Q Consensus 299 ~rt~~e~~~ll~~aGf~~~~~~~~~~~ 325 (333)
.++.+++.++++++||+++++...+.+
T Consensus 220 ~~s~~~~~~~l~~aGf~~~~~~~~~~~ 246 (302)
T 3hem_A 220 LPRISQVDYYSSNAGWKVERYHRIGAN 246 (302)
T ss_dssp CCCHHHHHHHHHHHTCEEEEEEECGGG
T ss_pred CCCHHHHHHHHHhCCcEEEEEEeCchh
Confidence 899999999999999999998876543
No 27
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=99.47 E-value=3.4e-13 Score=120.18 Aligned_cols=143 Identities=16% Similarity=0.184 Sum_probs=101.5
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe---------------
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM--------------- 235 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv--------------- 235 (333)
..+++.++ ..+..+|||||||+|.++..+++.++. +++++|+ +.+++.+++. +++
T Consensus 54 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~fD 131 (287)
T 1kpg_A 54 DLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVD 131 (287)
T ss_dssp HHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCS
T ss_pred HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCee
Confidence 34556555 667889999999999999999977754 9999999 7887766431 111
Q ss_pred -----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCC-----CccccccccchhhHHHhhCCCCCcCCHHHH
Q 035738 236 -----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPN-----TSIESKSNSDSDVLMMIQSPGGKERTRHEF 305 (333)
Q Consensus 236 -----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~-----~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~ 305 (333)
.++|++++++...+|++++++|+|||++++.+...+.... .+.........+.......+++..++.++|
T Consensus 132 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 211 (287)
T 1kpg_A 132 RIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMV 211 (287)
T ss_dssp EEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHH
T ss_pred EEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHHH
Confidence 6677887666679999999999999999999987654211 000000001111111122356778899999
Q ss_pred HHHHHhCCCCeeEEeecC
Q 035738 306 MTLATGAGFSGISCERAI 323 (333)
Q Consensus 306 ~~ll~~aGf~~~~~~~~~ 323 (333)
.++++++||+++++...+
T Consensus 212 ~~~l~~aGf~~~~~~~~~ 229 (287)
T 1kpg_A 212 QECASANGFTVTRVQSLQ 229 (287)
T ss_dssp HHHHHTTTCEEEEEEECH
T ss_pred HHHHHhCCcEEEEEEeCc
Confidence 999999999999987653
No 28
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=99.47 E-value=8.4e-14 Score=122.32 Aligned_cols=135 Identities=13% Similarity=0.231 Sum_probs=97.8
Q ss_pred hHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe--------------
Q 035738 177 VMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM-------------- 235 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv-------------- 235 (333)
....+++.++ .....+|||||||+|.++..+++..+ +++++|+ +.+++.+++. +++
T Consensus 25 ~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~ 101 (260)
T 1vl5_A 25 DLAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD 101 (260)
T ss_dssp CHHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCT
T ss_pred HHHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCC
Confidence 3445666665 66788999999999999999999875 8999999 7887765431 111
Q ss_pred ---------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHH-HhhCCCCCcCCHHHH
Q 035738 236 ---------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLM-MIQSPGGKERTRHEF 305 (333)
Q Consensus 236 ---------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m-~~~~~~g~~rt~~e~ 305 (333)
.++|++++.. .+|++++++|+|||++++.+...+..+. ...+..... .........++.++|
T Consensus 102 ~~fD~V~~~~~l~~~~d~~--~~l~~~~r~LkpgG~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (260)
T 1vl5_A 102 ERFHIVTCRIAAHHFPNPA--SFVSEAYRVLKKGGQLLLVDNSAPENDA------FDVFYNYVEKERDYSHHRAWKKSDW 173 (260)
T ss_dssp TCEEEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEEEBCSSHH------HHHHHHHHHHHHCTTCCCCCBHHHH
T ss_pred CCEEEEEEhhhhHhcCCHH--HHHHHHHHHcCCCCEEEEEEcCCCCCHH------HHHHHHHHHHhcCccccCCCCHHHH
Confidence 5788888765 8999999999999999999987664311 111111111 111113456789999
Q ss_pred HHHHHhCCCCeeEEeec
Q 035738 306 MTLATGAGFSGISCERA 322 (333)
Q Consensus 306 ~~ll~~aGf~~~~~~~~ 322 (333)
.++|+++||+++++...
T Consensus 174 ~~~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 174 LKMLEEAGFELEELHCF 190 (260)
T ss_dssp HHHHHHHTCEEEEEEEE
T ss_pred HHHHHHCCCeEEEEEEe
Confidence 99999999998877654
No 29
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=99.45 E-value=9.3e-14 Score=121.37 Aligned_cols=129 Identities=19% Similarity=0.256 Sum_probs=96.5
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----CCe------------------
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----PCM------------------ 235 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~gv------------------ 235 (333)
..++..++ ..+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++. +++
T Consensus 83 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 160 (254)
T 1xtp_A 83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD 160 (254)
T ss_dssp HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred HHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeE
Confidence 44555554 5678899999999999999999886 557999998 7887766431 111
Q ss_pred -----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHH
Q 035738 236 -----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLAT 310 (333)
Q Consensus 236 -----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~ 310 (333)
.+||++++++..++|++++++|+|||++++.+....... ...+. ......++.++|.++|+
T Consensus 161 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---------~~~~~-----~~~~~~~~~~~~~~~l~ 226 (254)
T 1xtp_A 161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDR---------FLVDK-----EDSSLTRSDIHYKRLFN 226 (254)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CC---------EEEET-----TTTEEEBCHHHHHHHHH
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCccc---------ceecc-----cCCcccCCHHHHHHHHH
Confidence 778888887788999999999999999999997544321 01110 01233568999999999
Q ss_pred hCCCCeeEEeecC
Q 035738 311 GAGFSGISCERAI 323 (333)
Q Consensus 311 ~aGf~~~~~~~~~ 323 (333)
++||+++++....
T Consensus 227 ~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 227 ESGVRVVKEAFQE 239 (254)
T ss_dssp HHTCCEEEEEECT
T ss_pred HCCCEEEEeeecC
Confidence 9999999987654
No 30
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=99.43 E-value=4.5e-13 Score=118.37 Aligned_cols=137 Identities=13% Similarity=0.122 Sum_probs=99.3
Q ss_pred HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------C-Ce--------------
Q 035738 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------P-CM-------------- 235 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-gv-------------- 235 (333)
...+++.++ .....+|||||||+|.++..+++.+ ..+++++|+ +.+++.+++. + ++
T Consensus 50 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 127 (273)
T 3bus_A 50 TDEMIALLD-VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED 127 (273)
T ss_dssp HHHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC
Confidence 345666665 6778899999999999999999987 679999999 7777665421 0 01
Q ss_pred ---------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHH
Q 035738 236 ---------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFM 306 (333)
Q Consensus 236 ---------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~ 306 (333)
.++|++++. .++|++++++|+|||++++.+.......... .....+..... .+.+..++.++|.
T Consensus 128 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~ 200 (273)
T 3bus_A 128 ASFDAVWALESLHHMPDR--GRALREMARVLRPGGTVAIADFVLLAPVEGA----KKEAVDAFRAG-GGVLSLGGIDEYE 200 (273)
T ss_dssp TCEEEEEEESCTTTSSCH--HHHHHHHHTTEEEEEEEEEEEEEESSCCCHH----HHHHHHHHHHH-HTCCCCCCHHHHH
T ss_pred CCccEEEEechhhhCCCH--HHHHHHHHHHcCCCeEEEEEEeeccCCCChh----HHHHHHHHHhh-cCccCCCCHHHHH
Confidence 556777665 4899999999999999999998765432110 00111111111 1356778999999
Q ss_pred HHHHhCCCCeeEEeecC
Q 035738 307 TLATGAGFSGISCERAI 323 (333)
Q Consensus 307 ~ll~~aGf~~~~~~~~~ 323 (333)
++++++||+++++...+
T Consensus 201 ~~l~~aGf~~~~~~~~~ 217 (273)
T 3bus_A 201 SDVRQAELVVTSTVDIS 217 (273)
T ss_dssp HHHHHTTCEEEEEEECH
T ss_pred HHHHHcCCeEEEEEECc
Confidence 99999999999887654
No 31
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=99.43 E-value=9.3e-13 Score=119.16 Aligned_cols=144 Identities=15% Similarity=0.235 Sum_probs=102.3
Q ss_pred HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe--------------
Q 035738 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM-------------- 235 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv-------------- 235 (333)
...+++.++ ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ..+
T Consensus 79 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~f 156 (318)
T 2fk8_A 79 VDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPV 156 (318)
T ss_dssp HHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCC
T ss_pred HHHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCc
Confidence 345566565 6678899999999999999999987 569999999 7887766532 111
Q ss_pred ------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCcccc-c----cccchhhHHHhhCCCCCcCCHHH
Q 035738 236 ------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIES-K----SNSDSDVLMMIQSPGGKERTRHE 304 (333)
Q Consensus 236 ------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~-~----~~~~~d~~m~~~~~~g~~rt~~e 304 (333)
.++|++++++..++|+++.++|+|||++++.++..+......... . .....+.......+++..++.++
T Consensus 157 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 236 (318)
T 2fk8_A 157 DRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEM 236 (318)
T ss_dssp SEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHH
T ss_pred CEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHHH
Confidence 667778767778999999999999999999999765421000000 0 00011111112235677889999
Q ss_pred HHHHHHhCCCCeeEEeecC
Q 035738 305 FMTLATGAGFSGISCERAI 323 (333)
Q Consensus 305 ~~~ll~~aGf~~~~~~~~~ 323 (333)
|.++++++||+++++...+
T Consensus 237 ~~~~l~~aGf~~~~~~~~~ 255 (318)
T 2fk8_A 237 MVEHGEKAGFTVPEPLSLR 255 (318)
T ss_dssp HHHHHHHTTCBCCCCEECH
T ss_pred HHHHHHhCCCEEEEEEecc
Confidence 9999999999999877653
No 32
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=99.43 E-value=3.4e-12 Score=118.15 Aligned_cols=198 Identities=11% Similarity=0.013 Sum_probs=121.0
Q ss_pred ChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccccccCCCCCChh
Q 035738 36 GIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVSLG 115 (333)
Q Consensus 36 glfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~ 115 (333)
++|..| . +|.|+.|||+++|+ +++.+++||++|.+.|+++.. ++ |++|+.+..++...+..+..
T Consensus 47 ~ll~~L-~----~~~t~~eLa~~~g~----~~~~v~~~L~~l~~~gll~~~------~~-~~lt~~~~~~l~~~~~~~~~ 110 (373)
T 2qm3_A 47 NVLSAV-L----ASDDIWRIVDLSEE----PLPLVVAILESLNELGYVTFE------DG-VKLTEKGEELVAEYGIGKRY 110 (373)
T ss_dssp HHHHHH-H----HCSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECS------SS-SEECHHHHHHHHHHTCCCCC
T ss_pred HHHHHh-c----CCCCHHHHHHHhCC----ChHHHHHHHHHHhhCCcEEEC------CC-EEECHHHHHHHHhcCccccc
Confidence 779999 5 38999999999999 999999999999999999874 34 99998876554332111111
Q ss_pred hhHh-hcc-----ChhhHHhhhhhHHHHhcCCChhhhhcCCChhhhhcCCchhHHHHHHHHhhhhhhhHHHHHhhccCCC
Q 035738 116 PGIQ-ITH-----DKVFLECWSQLKHAILEGGIPFNRAHGMHTFEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKGFD 189 (333)
Q Consensus 116 ~~~~-~~~-----~~~~~~~~~~L~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~ 189 (333)
+.+. ... ...+...|..+.+.++....+. . .++.....++. ...... .... .. ..
T Consensus 111 ~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~-~-----~~~~~~~~~~~--~~~~~l---------~~~~-~~-~~ 171 (373)
T 2qm3_A 111 DFTCPHCQGKTVDLQAFADLLEQFREIVKDRPEPL-H-----EFDQAYVTPET--TVARVI---------LMHT-RG-DL 171 (373)
T ss_dssp C------------CGGGHHHHHHHHHHHTTCCCCC-G-----GGTCCCBCHHH--HHHHHH---------HHHH-TT-CS
T ss_pred cccchhhcCCCcchhhhHHHHHHHHHHHhcCCccc-h-----hcCCeecCHHH--HHHHHH---------HHhh-cC-CC
Confidence 1110 000 0111223445555555432110 0 11100001111 111100 0011 11 22
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe--------------------EEEcc--
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM--------------------WILHD-- 240 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv--------------------~vLh~-- 240 (333)
.+.+||||| |+|.++..++...|+.+++++|+ +.+++.++++ .++ .|+.+
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p 250 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPP 250 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCC
Confidence 468999999 99999999999998889999999 8888876543 012 22222
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738 241 WNDEHCLKLLKNCYKSIPEDGKVIAVELM 269 (333)
Q Consensus 241 ~~~~~~~~lL~~~~~~L~pgG~l~i~e~~ 269 (333)
+.......+|+++.++|+|||++++++..
T Consensus 251 ~~~~~~~~~l~~~~~~LkpgG~~~~~~~~ 279 (373)
T 2qm3_A 251 ETLEAIRAFVGRGIATLKGPRCAGYFGIT 279 (373)
T ss_dssp SSHHHHHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred CchHHHHHHHHHHHHHcccCCeEEEEEEe
Confidence 11123468999999999999987777764
No 33
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=99.42 E-value=2e-13 Score=120.17 Aligned_cols=143 Identities=15% Similarity=0.179 Sum_probs=94.9
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-CC------------------e----E-EEccCCh
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-PC------------------M----W-ILHDWND 243 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~g------------------v----~-vLh~~~~ 243 (333)
.+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++. ++ + . ++|++++
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~ 126 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSFG--TVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAG 126 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTSS--EEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSCH
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcCC
Confidence 3568999999999999999998854 7999999 8888776542 11 1 2 6677754
Q ss_pred -hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCcccc------------c--------cccchhhHHHhhCCC------
Q 035738 244 -EHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIES------------K--------SNSDSDVLMMIQSPG------ 296 (333)
Q Consensus 244 -~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~------------~--------~~~~~d~~m~~~~~~------ 296 (333)
++..++|++++++|+|||+++|.+...++.-...... . ....+++.+.....+
T Consensus 127 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (263)
T 3pfg_A 127 QAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHH 206 (263)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEEE
Confidence 5667999999999999999999765444321110000 0 000111111110011
Q ss_pred -----CCcCCHHHHHHHHHhCCCCeeEEeecCCceeEEEEeC
Q 035738 297 -----GKERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK 333 (333)
Q Consensus 297 -----g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 333 (333)
.+.++.++|.++|+++||+++++........++.++|
T Consensus 207 ~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K 248 (263)
T 3pfg_A 207 EESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLP 248 (263)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred EEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEec
Confidence 2346899999999999999999877666666665553
No 34
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=99.42 E-value=3.7e-13 Score=116.79 Aligned_cols=133 Identities=16% Similarity=0.292 Sum_probs=96.2
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe----------------
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM---------------- 235 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv---------------- 235 (333)
..+++.+. ..+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++. +++
T Consensus 11 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 87 (239)
T 1xxl_A 11 GLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDS 87 (239)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTC
T ss_pred chHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCc
Confidence 44555565 77889999999999999999998875 7999999 7787765421 111
Q ss_pred -------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhH-HHhhCCCCCcCCHHHHHH
Q 035738 236 -------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVL-MMIQSPGGKERTRHEFMT 307 (333)
Q Consensus 236 -------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~-m~~~~~~g~~rt~~e~~~ 307 (333)
.++|++++.. .+|++++++|+|||++++.+...+... . ...+.... ..........++.++|.+
T Consensus 88 fD~v~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (239)
T 1xxl_A 88 FDIITCRYAAHHFSDVR--KAVREVARVLKQDGRFLLVDHYAPEDP---V---LDEFVNHLNRLRDPSHVRESSLSEWQA 159 (239)
T ss_dssp EEEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEECBCSSH---H---HHHHHHHHHHHHCTTCCCCCBHHHHHH
T ss_pred EEEEEECCchhhccCHH--HHHHHHHHHcCCCcEEEEEEcCCCCCh---h---HHHHHHHHHHhccccccCCCCHHHHHH
Confidence 5778888654 899999999999999999998765431 1 11111111 111111345678999999
Q ss_pred HHHhCCCCeeEEeec
Q 035738 308 LATGAGFSGISCERA 322 (333)
Q Consensus 308 ll~~aGf~~~~~~~~ 322 (333)
+|+++||+++++...
T Consensus 160 ll~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 160 MFSANQLAYQDIQKW 174 (239)
T ss_dssp HHHHTTEEEEEEEEE
T ss_pred HHHHCCCcEEEEEee
Confidence 999999998887654
No 35
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=99.41 E-value=8.6e-13 Score=118.13 Aligned_cols=134 Identities=15% Similarity=0.155 Sum_probs=96.3
Q ss_pred HHHHhhc---cCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC--------------------C-
Q 035738 179 SNILESY---KGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH--------------------P- 233 (333)
Q Consensus 179 ~~~~~~~---~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------------------~- 233 (333)
..+++.+ ....+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. +
T Consensus 68 ~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 146 (297)
T 2o57_A 68 EWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC 146 (297)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS
T ss_pred HHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCC
Confidence 4455555 126778899999999999999999986 469999999 7777655421 0
Q ss_pred --C----e---EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHH
Q 035738 234 --C----M---WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHE 304 (333)
Q Consensus 234 --g----v---~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e 304 (333)
+ | .++|++++. ..+|++++++|+|||++++.++..++..... ....+.... ......+.++
T Consensus 147 ~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~------~~~~~~~~~--~~~~~~~~~~ 216 (297)
T 2o57_A 147 EDNSYDFIWSQDAFLHSPDK--LKVFQECARVLKPRGVMAITDPMKEDGIDKS------SIQPILDRI--KLHDMGSLGL 216 (297)
T ss_dssp CTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEECTTCCGG------GGHHHHHHH--TCSSCCCHHH
T ss_pred CCCCEeEEEecchhhhcCCH--HHHHHHHHHHcCCCeEEEEEEeccCCCCchH------HHHHHHHHh--cCCCCCCHHH
Confidence 1 1 567888774 5999999999999999999999876532211 111111111 1233568999
Q ss_pred HHHHHHhCCCCeeEEeecC
Q 035738 305 FMTLATGAGFSGISCERAI 323 (333)
Q Consensus 305 ~~~ll~~aGf~~~~~~~~~ 323 (333)
|.++|+++||+++++....
T Consensus 217 ~~~~l~~aGf~~~~~~~~~ 235 (297)
T 2o57_A 217 YRSLAKECGLVTLRTFSRP 235 (297)
T ss_dssp HHHHHHHTTEEEEEEEECH
T ss_pred HHHHHHHCCCeEEEEEECc
Confidence 9999999999999887643
No 36
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=99.41 E-value=1.4e-12 Score=117.81 Aligned_cols=143 Identities=8% Similarity=0.017 Sum_probs=101.8
Q ss_pred HhhhhhhhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe------
Q 035738 170 MYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM------ 235 (333)
Q Consensus 170 m~~~~~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv------ 235 (333)
+..........+++.++...+..+|||||||+|.++..+++++ ..+++++|+ +.+++.++++ .++
T Consensus 97 ~~~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d 175 (312)
T 3vc1_A 97 LHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCN 175 (312)
T ss_dssp HHHHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred hhhHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECC
Confidence 4444444455666666546678899999999999999999986 578999999 8888766531 011
Q ss_pred -----------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCC
Q 035738 236 -----------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGK 298 (333)
Q Consensus 236 -----------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~ 298 (333)
.++|+++ ..++|++++++|+|||++++.+....+..... ........... ...
T Consensus 176 ~~~~~~~~~~fD~V~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-----~~~~~~~~~~~--~~~ 245 (312)
T 3vc1_A 176 MLDTPFDKGAVTASWNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQP-----SKWVSQINAHF--ECN 245 (312)
T ss_dssp TTSCCCCTTCEEEEEEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSC-----CHHHHHHHHHH--TCC
T ss_pred hhcCCCCCCCEeEEEECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEccccccccch-----hHHHHHHHhhh--cCC
Confidence 5567774 45899999999999999999998776532111 11222221111 123
Q ss_pred cCCHHHHHHHHHhCCCCeeEEeecC
Q 035738 299 ERTRHEFMTLATGAGFSGISCERAI 323 (333)
Q Consensus 299 ~rt~~e~~~ll~~aGf~~~~~~~~~ 323 (333)
.++.++|.++|+++||+++++...+
T Consensus 246 ~~s~~~~~~~l~~aGf~~~~~~~~~ 270 (312)
T 3vc1_A 246 IHSRREYLRAMADNRLVPHTIVDLT 270 (312)
T ss_dssp CCBHHHHHHHHHTTTEEEEEEEECH
T ss_pred CCCHHHHHHHHHHCCCEEEEEEeCC
Confidence 6789999999999999999887653
No 37
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=99.41 E-value=2e-13 Score=120.99 Aligned_cols=133 Identities=17% Similarity=0.244 Sum_probs=94.6
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe-----------------------EE
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM-----------------------WI 237 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv-----------------------~v 237 (333)
+.+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++. +++ .+
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 56788999999999999999999999999999999 7887766431 111 66
Q ss_pred EccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHH-HhhCCCCCcCCHHHHHHHHHhCCCCe
Q 035738 238 LHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLM-MIQSPGGKERTRHEFMTLATGAGFSG 316 (333)
Q Consensus 238 Lh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m-~~~~~~g~~rt~~e~~~ll~~aGf~~ 316 (333)
+|++++.. .+|++++++|+|||++++.+.........+............. .....++..++..+|.++|+++||++
T Consensus 115 l~~~~~~~--~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~ 192 (276)
T 3mgg_A 115 LEHLQSPE--EALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEK 192 (276)
T ss_dssp GGGCSCHH--HHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTTCEE
T ss_pred hhhcCCHH--HHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCCCCe
Confidence 77887765 8999999999999999999975422100000000111111111 11113566677889999999999999
Q ss_pred eEEeec
Q 035738 317 ISCERA 322 (333)
Q Consensus 317 ~~~~~~ 322 (333)
+++...
T Consensus 193 v~~~~~ 198 (276)
T 3mgg_A 193 IRVEPR 198 (276)
T ss_dssp EEEEEE
T ss_pred EEEeeE
Confidence 988754
No 38
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=99.40 E-value=1.9e-13 Score=112.08 Aligned_cols=126 Identities=14% Similarity=0.157 Sum_probs=94.7
Q ss_pred hhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-CC----------------e----EEEcc
Q 035738 183 ESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-PC----------------M----WILHD 240 (333)
Q Consensus 183 ~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~g----------------v----~vLh~ 240 (333)
+.++ ..+..+|||||||+|.++..+++... +++++|+ +.+++.+++. ++ + .++|+
T Consensus 11 ~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d~~~~~~~~D~v~~~~~l~~ 87 (170)
T 3i9f_A 11 PNIF-EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDPKEIPDNSVDFILFANSFHD 87 (170)
T ss_dssp HHHH-SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSGGGSCTTCEEEEEEESCSTT
T ss_pred HhcC-cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCCCCCCCCceEEEEEccchhc
Confidence 3344 66778999999999999999999884 8999999 7787766432 11 1 66777
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEe
Q 035738 241 WNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCE 320 (333)
Q Consensus 241 ~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 320 (333)
+++.. .+|+++++.|+|||++++.+.........+ +....++.++|.++|+ ||+++++.
T Consensus 88 ~~~~~--~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~l~--Gf~~~~~~ 146 (170)
T 3i9f_A 88 MDDKQ--HVISEVKRILKDDGRVIIIDWRKENTGIGP-----------------PLSIRMDEKDYMGWFS--NFVVEKRF 146 (170)
T ss_dssp CSCHH--HHHHHHHHHEEEEEEEEEEEECSSCCSSSS-----------------CGGGCCCHHHHHHHTT--TEEEEEEE
T ss_pred ccCHH--HHHHHHHHhcCCCCEEEEEEcCccccccCc-----------------hHhhhcCHHHHHHHHh--CcEEEEcc
Confidence 76554 899999999999999999998655432110 0112358999999999 99999999
Q ss_pred ecCCceeEEEEe
Q 035738 321 RAIGNLWVMEFY 332 (333)
Q Consensus 321 ~~~~~~~vie~~ 332 (333)
....+...+.+.
T Consensus 147 ~~~~~~~~l~~~ 158 (170)
T 3i9f_A 147 NPTPYHFGLVLK 158 (170)
T ss_dssp CSSTTEEEEEEE
T ss_pred CCCCceEEEEEe
Confidence 988665555443
No 39
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=99.40 E-value=2.1e-12 Score=113.56 Aligned_cols=131 Identities=11% Similarity=0.084 Sum_probs=93.7
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCCCCe----------------------
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPHPCM---------------------- 235 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~gv---------------------- 235 (333)
..+.+.++ ..+..+|||||||+|.++..+++ |..+++++|+ +.+++.+++.+++
T Consensus 24 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 100 (261)
T 3ege_A 24 NAIINLLN-LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVIS 100 (261)
T ss_dssp HHHHHHHC-CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEE
T ss_pred HHHHHHhC-CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEE
Confidence 34555555 66788999999999999999997 7789999999 8899887764221
Q ss_pred -EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCC
Q 035738 236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGF 314 (333)
Q Consensus 236 -~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf 314 (333)
.++|++++.. ++|++++++|+ ||++++.+...+.... .+.. ..+..... . .....++.+++. +|+++||
T Consensus 101 ~~~l~~~~~~~--~~l~~~~~~Lk-gG~~~~~~~~~~~~~~-~~~~---~~~~~~~~-~-~~~~~~~~~~~~-~l~~aGF 170 (261)
T 3ege_A 101 ILAIHHFSHLE--KSFQEMQRIIR-DGTIVLLTFDIRLAQR-IWLY---DYFPFLWE-D-ALRFLPLDEQIN-LLQENTK 170 (261)
T ss_dssp ESCGGGCSSHH--HHHHHHHHHBC-SSCEEEEEECGGGCCC-CGGG---GTCHHHHH-H-HHTSCCHHHHHH-HHHHHHC
T ss_pred cchHhhccCHH--HHHHHHHHHhC-CcEEEEEEcCCchhHH-HHHH---HHHHHHhh-h-hhhhCCCHHHHH-HHHHcCC
Confidence 6677886654 89999999999 9999999985543211 1110 11111111 1 123455678899 9999999
Q ss_pred CeeEEeec
Q 035738 315 SGISCERA 322 (333)
Q Consensus 315 ~~~~~~~~ 322 (333)
+.+++...
T Consensus 171 ~~v~~~~~ 178 (261)
T 3ege_A 171 RRVEAIPF 178 (261)
T ss_dssp SEEEEEEC
T ss_pred CceeEEEe
Confidence 99988765
No 40
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=99.40 E-value=5.6e-13 Score=116.57 Aligned_cols=132 Identities=13% Similarity=0.078 Sum_probs=94.6
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe---------------
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM--------------- 235 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv--------------- 235 (333)
..++..+. ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. .++
T Consensus 26 ~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 103 (256)
T 1nkv_A 26 ATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEK 103 (256)
T ss_dssp HHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSC
T ss_pred HHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCCC
Confidence 34555555 6778899999999999999999988 678999999 8887766431 011
Q ss_pred -------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHH
Q 035738 236 -------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTL 308 (333)
Q Consensus 236 -------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~l 308 (333)
.++|++++. .++|++++++|+|||++++.++......... ........ ......++.++|.++
T Consensus 104 fD~V~~~~~~~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~------~~~~~~~~--~~~~~~~~~~~~~~~ 173 (256)
T 1nkv_A 104 CDVAACVGATWIAGGF--AGAEELLAQSLKPGGIMLIGEPYWRQLPATE------EIAQACGV--SSTSDFLTLPGLVGA 173 (256)
T ss_dssp EEEEEEESCGGGTSSS--HHHHHHHTTSEEEEEEEEEEEEEETTCCSSH------HHHHTTTC--SCGGGSCCHHHHHHH
T ss_pred CCEEEECCChHhcCCH--HHHHHHHHHHcCCCeEEEEecCcccCCCChH------HHHHHHhc--ccccccCCHHHHHHH
Confidence 456677654 4899999999999999999998765432211 00000000 012245789999999
Q ss_pred HHhCCCCeeEEeec
Q 035738 309 ATGAGFSGISCERA 322 (333)
Q Consensus 309 l~~aGf~~~~~~~~ 322 (333)
|+++||+.+++...
T Consensus 174 l~~aGf~~~~~~~~ 187 (256)
T 1nkv_A 174 FDDLGYDVVEMVLA 187 (256)
T ss_dssp HHTTTBCCCEEEEC
T ss_pred HHHCCCeeEEEEeC
Confidence 99999999887543
No 41
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=99.39 E-value=7.4e-13 Score=112.46 Aligned_cols=118 Identities=12% Similarity=0.070 Sum_probs=89.6
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------------C--C---e----EEEccCChh
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------------P--C---M----WILHDWNDE 244 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------------~--g---v----~vLh~~~~~ 244 (333)
+.+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++. + + + .+||+++++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRD 118 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCHH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCHH
Confidence 446789999999999999999987 568999999 7787766542 1 1 1 678888877
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCC-CCeeEEeec
Q 035738 245 HCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAG-FSGISCERA 322 (333)
Q Consensus 245 ~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aG-f~~~~~~~~ 322 (333)
+...+|++++++|+|||++++......... .. ... .....++.++|.++|+++| |+++++...
T Consensus 119 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~----~~----~~~-------~~~~~~~~~~~~~~l~~aG~f~~~~~~~~ 182 (211)
T 3e23_A 119 ELADVLKLIWRALKPGGLFYASYKSGEGEG----RD----KLA-------RYYNYPSEEWLRARYAEAGTWASVAVESS 182 (211)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEECCSSCE----EC----TTS-------CEECCCCHHHHHHHHHHHCCCSEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEcCCCccc----cc----ccc-------hhccCCCHHHHHHHHHhCCCcEEEEEEec
Confidence 888999999999999999999865433210 00 000 0123468999999999999 999988754
No 42
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=99.39 E-value=2.2e-13 Score=117.84 Aligned_cols=143 Identities=17% Similarity=0.192 Sum_probs=95.4
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-CC----------------e-------EEEccCC-
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-PC----------------M-------WILHDWN- 242 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~g----------------v-------~vLh~~~- 242 (333)
.+..+|||||||+|.++..+++.++ +++++|+ +.+++.+++. ++ . .++|+++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence 4568999999999999999999876 7999999 8888766532 11 1 2455554
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccc--------------------cccchhhHHHhhCCCC-----
Q 035738 243 DEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESK--------------------SNSDSDVLMMIQSPGG----- 297 (333)
Q Consensus 243 ~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~--------------------~~~~~d~~m~~~~~~g----- 297 (333)
+++..++|++++++|+|||++++.+...++......... ......+.++....++
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGVRHF 196 (239)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcceEE
Confidence 356779999999999999999998766554321100000 0000111111100111
Q ss_pred ------CcCCHHHHHHHHHhCCCCeeEEeecCCceeEEEEeC
Q 035738 298 ------KERTRHEFMTLATGAGFSGISCERAIGNLWVMEFYK 333 (333)
Q Consensus 298 ------~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 333 (333)
+.++.++|.++|+++||+++.+....+...++.++|
T Consensus 197 ~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K 238 (239)
T 3bxo_A 197 SDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVP 238 (239)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred EEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEec
Confidence 346899999999999997777666556677777764
No 43
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.38 E-value=4.9e-13 Score=112.84 Aligned_cols=123 Identities=13% Similarity=0.065 Sum_probs=92.2
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-CCe-----------------------EEEccCChhH
Q 035738 191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-PCM-----------------------WILHDWNDEH 245 (333)
Q Consensus 191 ~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~gv-----------------------~vLh~~~~~~ 245 (333)
..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. +++ .++|++++++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE 119 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence 679999999999999999987 458999999 7888776542 111 6778888677
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeecC-C
Q 035738 246 CLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAI-G 324 (333)
Q Consensus 246 ~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~-~ 324 (333)
..++|++++++|+|||++++.+...+... . +.-. ......++.++|.++|+++||+++++...+ .
T Consensus 120 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~------~----~~~~----~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 185 (203)
T 3h2b_A 120 LPDALVALRMAVEDGGGLLMSFFSGPSLE------P----MYHP----VATAYRWPLPELAQALETAGFQVTSSHWDPRF 185 (203)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEEECCSSCE------E----ECCS----SSCEEECCHHHHHHHHHHTTEEEEEEEECTTS
T ss_pred HHHHHHHHHHHcCCCcEEEEEEccCCchh------h----hhch----hhhhccCCHHHHHHHHHHCCCcEEEEEecCCC
Confidence 78999999999999999999987544310 0 0000 012345689999999999999999988765 3
Q ss_pred ceeEE
Q 035738 325 NLWVM 329 (333)
Q Consensus 325 ~~~vi 329 (333)
++..+
T Consensus 186 p~~~l 190 (203)
T 3h2b_A 186 PHAYL 190 (203)
T ss_dssp SEEEE
T ss_pred cchhh
Confidence 34443
No 44
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=99.38 E-value=1.2e-12 Score=114.63 Aligned_cols=131 Identities=12% Similarity=0.062 Sum_probs=94.5
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CC-e----------------
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PC-M---------------- 235 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~g-v---------------- 235 (333)
.++..+....+..+|||||||+|..+..+++.++. +++++|+ +.+++.+++. ++ +
T Consensus 36 ~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 114 (257)
T 3f4k_A 36 KAVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEE 114 (257)
T ss_dssp HHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTC
T ss_pred HHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCC
Confidence 34454543667789999999999999999999986 9999999 7787765431 00 1
Q ss_pred -------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHH
Q 035738 236 -------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTL 308 (333)
Q Consensus 236 -------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~l 308 (333)
.++|+++ ..++|++++++|+|||++++.++......... ......... ....++.++|.++
T Consensus 115 fD~v~~~~~l~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~------~~~~~~~~~---~~~~~~~~~~~~~ 182 (257)
T 3f4k_A 115 LDLIWSEGAIYNIG---FERGMNEWSKYLKKGGFIAVSEASWFTSERPA------EIEDFWMDA---YPEISVIPTCIDK 182 (257)
T ss_dssp EEEEEEESCSCCCC---HHHHHHHHHTTEEEEEEEEEEEEEESSSCCCH------HHHHHHHHH---CTTCCBHHHHHHH
T ss_pred EEEEEecChHhhcC---HHHHHHHHHHHcCCCcEEEEEEeeccCCCChH------HHHHHHHHh---CCCCCCHHHHHHH
Confidence 4466663 34799999999999999999998654432111 111222211 2336689999999
Q ss_pred HHhCCCCeeEEeecC
Q 035738 309 ATGAGFSGISCERAI 323 (333)
Q Consensus 309 l~~aGf~~~~~~~~~ 323 (333)
|+++||+++++...+
T Consensus 183 l~~aGf~~v~~~~~~ 197 (257)
T 3f4k_A 183 MERAGYTPTAHFILP 197 (257)
T ss_dssp HHHTTEEEEEEEECC
T ss_pred HHHCCCeEEEEEECC
Confidence 999999999987664
No 45
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=99.37 E-value=4.3e-13 Score=120.35 Aligned_cols=152 Identities=9% Similarity=0.064 Sum_probs=98.5
Q ss_pred hHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---------CCe-----------
Q 035738 177 VMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---------PCM----------- 235 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~gv----------- 235 (333)
....+++.++ . ...+|||||||+|.++..+++. ..+++++|+ +.+++.+++. .++
T Consensus 71 ~~~~~~~~~~-~-~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~ 146 (299)
T 3g2m_A 71 EAREFATRTG-P-VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA 146 (299)
T ss_dssp HHHHHHHHHC-C-CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC
T ss_pred HHHHHHHhhC-C-CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC
Confidence 3445555554 3 3349999999999999999987 468999999 8888776531 011
Q ss_pred ------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccc--cccc-----------------c
Q 035738 236 ------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIE--SKSN-----------------S 284 (333)
Q Consensus 236 ------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~--~~~~-----------------~ 284 (333)
.++|.+++++..++|++++++|+|||+|++..+..+........ ..+. .
T Consensus 147 ~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 226 (299)
T 3g2m_A 147 LDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEE 226 (299)
T ss_dssp CSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEEE
T ss_pred cCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEecccc
Confidence 33566777778899999999999999999988755421000000 0000 0
Q ss_pred chhhHHHh----------hCCCCCcCCHHHHHHHHHhCCCCeeEEeecC------CceeEEEEe
Q 035738 285 DSDVLMMI----------QSPGGKERTRHEFMTLATGAGFSGISCERAI------GNLWVMEFY 332 (333)
Q Consensus 285 ~~d~~m~~----------~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~------~~~~vie~~ 332 (333)
...+.+.. .....+.++.++|.++|+++||+++++.+.. ....++|+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g~~~~~~~lvea~ 290 (299)
T 3g2m_A 227 IQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGGAGRKDMVLVEAV 290 (299)
T ss_dssp EEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTSSSSCCEEEEEEE
T ss_pred EEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCCCCccceeeeehh
Confidence 00000000 0001124699999999999999999998875 224567664
No 46
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=99.37 E-value=4.9e-13 Score=116.11 Aligned_cols=118 Identities=19% Similarity=0.259 Sum_probs=91.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---------------------C-C-e------EEEc
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---------------------P-C-M------WILH 239 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------------~-g-v------~vLh 239 (333)
+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++. + + . .++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 57899999999999999998877 568999999 7887765432 0 0 0 6688
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEE
Q 035738 240 DWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISC 319 (333)
Q Consensus 240 ~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~ 319 (333)
+++++...++|++++++|+|||++++.++..+.. . .++. ......++.++|.++|+++||+++++
T Consensus 158 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~---~-------~~~~-----~~~~~~~~~~~~~~~l~~aGf~~~~~ 222 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG---V-------ILDD-----VDSSVCRDLDVVRRIICSAGLSLLAE 222 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSS---E-------EEET-----TTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCc---c-------eecc-----cCCcccCCHHHHHHHHHHcCCeEEEe
Confidence 8888877899999999999999999999876541 0 0110 01233458999999999999999998
Q ss_pred eecC
Q 035738 320 ERAI 323 (333)
Q Consensus 320 ~~~~ 323 (333)
....
T Consensus 223 ~~~~ 226 (241)
T 2ex4_A 223 ERQE 226 (241)
T ss_dssp EECC
T ss_pred eecC
Confidence 7654
No 47
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=99.36 E-value=1.3e-12 Score=111.76 Aligned_cols=133 Identities=17% Similarity=0.157 Sum_probs=89.6
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCCCC---------------------e--
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPHPC---------------------M-- 235 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~g---------------------v-- 235 (333)
.++..+. .....+|||||||+|.++..+++. ..+++++|+ +.+++.+++... .
T Consensus 43 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 119 (227)
T 3e8s_A 43 AILLAIL-GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDL 119 (227)
T ss_dssp HHHHHHH-HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEE
T ss_pred HHHHHhh-cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccE
Confidence 3444444 445689999999999999999988 568999999 788877654311 1
Q ss_pred ----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhC-----CCCCcCCHHHHH
Q 035738 236 ----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQS-----PGGKERTRHEFM 306 (333)
Q Consensus 236 ----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~-----~~g~~rt~~e~~ 306 (333)
.++| ..+. ..+|++++++|+|||++++.++........... ..+......... .....++.++|.
T Consensus 120 v~~~~~l~-~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (227)
T 3e8s_A 120 ICANFALL-HQDI--IELLSAMRTLLVPGGALVIQTLHPWSVADGDYQ---DGWREESFAGFAGDWQPMPWYFRTLASWL 193 (227)
T ss_dssp EEEESCCC-SSCC--HHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCS---CEEEEECCTTSSSCCCCEEEEECCHHHHH
T ss_pred EEECchhh-hhhH--HHHHHHHHHHhCCCeEEEEEecCccccCccccc---cccchhhhhccccCcccceEEEecHHHHH
Confidence 4555 4444 489999999999999999998865443221100 011110000000 011346899999
Q ss_pred HHHHhCCCCeeEEee
Q 035738 307 TLATGAGFSGISCER 321 (333)
Q Consensus 307 ~ll~~aGf~~~~~~~ 321 (333)
++|+++||+++++..
T Consensus 194 ~~l~~aGf~~~~~~~ 208 (227)
T 3e8s_A 194 NALDMAGLRLVSLQE 208 (227)
T ss_dssp HHHHHTTEEEEEEEC
T ss_pred HHHHHcCCeEEEEec
Confidence 999999999999875
No 48
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=99.36 E-value=3.3e-12 Score=110.58 Aligned_cols=139 Identities=12% Similarity=0.070 Sum_probs=89.8
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CCe--------------------
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PCM-------------------- 235 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~gv-------------------- 235 (333)
.+...++ ..+..+|||||||+|.++..+++... .+++++|+ +.+++.+++. .++
T Consensus 34 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 111 (243)
T 3bkw_A 34 ALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLA 111 (243)
T ss_dssp HHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEE
T ss_pred HHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEE
Confidence 4445454 55678999999999999999988733 38999999 7887766532 111
Q ss_pred ---EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC--CCCCcccc--------ccccch-----hhHHHhhCCCC
Q 035738 236 ---WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPE--VPNTSIES--------KSNSDS-----DVLMMIQSPGG 297 (333)
Q Consensus 236 ---~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~--~~~~~~~~--------~~~~~~-----d~~m~~~~~~g 297 (333)
.++|++++. .++|++++++|+|||++++.++.... .....+.. .....+ ...........
T Consensus 112 ~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (243)
T 3bkw_A 112 YSSLALHYVEDV--ARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVK 189 (243)
T ss_dssp EEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCE
T ss_pred EEeccccccchH--HHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEE
Confidence 566777654 48999999999999999998753210 00000000 000000 00001100122
Q ss_pred CcCCHHHHHHHHHhCCCCeeEEeec
Q 035738 298 KERTRHEFMTLATGAGFSGISCERA 322 (333)
Q Consensus 298 ~~rt~~e~~~ll~~aGf~~~~~~~~ 322 (333)
..++.++|.++|+++||+++++...
T Consensus 190 ~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 190 HHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp EECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred EeccHHHHHHHHHHcCCEeeeeccC
Confidence 3468999999999999999988754
No 49
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=99.35 E-value=1.3e-12 Score=115.27 Aligned_cols=131 Identities=12% Similarity=0.040 Sum_probs=94.7
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe----------------
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM---------------- 235 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv---------------- 235 (333)
.++..+....+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++. +.+
T Consensus 36 ~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (267)
T 3kkz_A 36 KALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEE 114 (267)
T ss_dssp HHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTC
T ss_pred HHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCC
Confidence 34444443567889999999999999999998 8889999999 7877765432 111
Q ss_pred -------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHH
Q 035738 236 -------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTL 308 (333)
Q Consensus 236 -------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~l 308 (333)
.++|+++ . .++|++++++|+|||++++.+.......... ......... ....++.+++.++
T Consensus 115 fD~i~~~~~~~~~~-~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~------~~~~~~~~~---~~~~~~~~~~~~~ 182 (267)
T 3kkz_A 115 LDLIWSEGAIYNIG-F--ERGLNEWRKYLKKGGYLAVSECSWFTDERPA------EINDFWMDA---YPEIDTIPNQVAK 182 (267)
T ss_dssp EEEEEESSCGGGTC-H--HHHHHHHGGGEEEEEEEEEEEEEESSSCCCH------HHHHHHHHH---CTTCEEHHHHHHH
T ss_pred EEEEEEcCCceecC-H--HHHHHHHHHHcCCCCEEEEEEeeecCCCChH------HHHHHHHHh---CCCCCCHHHHHHH
Confidence 4566663 3 4799999999999999999998755432211 111221111 2346689999999
Q ss_pred HHhCCCCeeEEeecC
Q 035738 309 ATGAGFSGISCERAI 323 (333)
Q Consensus 309 l~~aGf~~~~~~~~~ 323 (333)
++++||+++++...+
T Consensus 183 l~~aGf~~v~~~~~~ 197 (267)
T 3kkz_A 183 IHKAGYLPVATFILP 197 (267)
T ss_dssp HHHTTEEEEEEEECC
T ss_pred HHHCCCEEEEEEECC
Confidence 999999999987765
No 50
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=99.35 E-value=1.4e-12 Score=117.39 Aligned_cols=146 Identities=13% Similarity=0.144 Sum_probs=97.3
Q ss_pred CCCCCeEEEEcCCccHHHHHHH-HHCCCCeEEEeec-hhHhhhCCCC------CC-e----------------------E
Q 035738 188 FDNIKQLVDVGGGIGVTLQAIT-TKYPYIKGINFDL-PHVIEHVPPH------PC-M----------------------W 236 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~~------~g-v----------------------~ 236 (333)
..+..+|||||||+|.++..++ ..+|+.+++++|+ +.+++.++++ .+ + .
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 5577899999999999999996 6789999999999 8888766532 00 1 5
Q ss_pred EEccCChh-HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCcc--cc-cccc---c-hhhHHHhhCCC--CCcCCHHHHH
Q 035738 237 ILHDWNDE-HCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSI--ES-KSNS---D-SDVLMMIQSPG--GKERTRHEFM 306 (333)
Q Consensus 237 vLh~~~~~-~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~--~~-~~~~---~-~d~~m~~~~~~--g~~rt~~e~~ 306 (333)
++|+++++ ...++|++++++|+|||++++.+...+....... .. .... . ....+...... ...++.++|.
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTR 275 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHH
Confidence 56777544 4457999999999999999998876554322110 00 0000 0 00001111111 1347899999
Q ss_pred HHHHhCCCCeeEEeecCCc-eeEEEEeC
Q 035738 307 TLATGAGFSGISCERAIGN-LWVMEFYK 333 (333)
Q Consensus 307 ~ll~~aGf~~~~~~~~~~~-~~vie~~~ 333 (333)
++|+++||+++++.....+ ...+.++|
T Consensus 276 ~~l~~aGF~~v~~~~~~~~~~~~v~a~K 303 (305)
T 3ocj_A 276 AQLEEAGFTDLRFEDDRARLFPTVIARK 303 (305)
T ss_dssp HHHHHTTCEEEEEECCTTSSSCEEEEEC
T ss_pred HHHHHCCCEEEEEEcccCceeeEEEEec
Confidence 9999999999999865433 33444443
No 51
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=99.35 E-value=1e-12 Score=117.13 Aligned_cols=140 Identities=16% Similarity=0.156 Sum_probs=93.9
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hhHhhhCCCC----C-Ce-----------------
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPY-IKGINFDL-PHVIEHVPPH----P-CM----------------- 235 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~----~-gv----------------- 235 (333)
.+++.+....+..+|||||||+|.++..+++.+|+ .+++++|+ +.+++.+++. + ++
T Consensus 12 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 91 (284)
T 3gu3_A 12 FLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYD 91 (284)
T ss_dssp HHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEE
T ss_pred HHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCee
Confidence 34444433567889999999999999999999995 89999999 7787655431 0 11
Q ss_pred -----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeec-----C---CCCCCccccccccchhhHHHh-hCCCCCcCC
Q 035738 236 -----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELML-----P---EVPNTSIESKSNSDSDVLMMI-QSPGGKERT 301 (333)
Q Consensus 236 -----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~-----~---~~~~~~~~~~~~~~~d~~m~~-~~~~g~~rt 301 (333)
.++|++++.. ++|+++++.|+|||++++.++.. . ++...+.......+..+.... ...+....+
T Consensus 92 ~v~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (284)
T 3gu3_A 92 IAICHAFLLHMTTPE--TMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNI 169 (284)
T ss_dssp EEEEESCGGGCSSHH--HHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTG
T ss_pred EEEECChhhcCCCHH--HHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccH
Confidence 5677777665 89999999999999999999861 1 111000000011122222111 012344556
Q ss_pred HHHHHHHHHhCCCCeeEEee
Q 035738 302 RHEFMTLATGAGFSGISCER 321 (333)
Q Consensus 302 ~~e~~~ll~~aGf~~~~~~~ 321 (333)
.+++.++|++|||+.+++..
T Consensus 170 ~~~l~~~l~~aGF~~v~~~~ 189 (284)
T 3gu3_A 170 GMKIPIYLSELGVKNIECRV 189 (284)
T ss_dssp GGTHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHcCCCeEEEEE
Confidence 77899999999999887744
No 52
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=99.35 E-value=2.1e-12 Score=112.09 Aligned_cols=128 Identities=13% Similarity=0.087 Sum_probs=88.0
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-C-Ce----------------------EEEccCCh
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-P-CM----------------------WILHDWND 243 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~-gv----------------------~vLh~~~~ 243 (333)
.+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++. + ++ .+||++++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 118 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD 118 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcC
Confidence 3567899999999999999999876 6899999 7777665431 0 11 77788877
Q ss_pred hHHHHHHHHHH-HhCCCCcEEEEEeeecCCCCCCcc--ccccccc---hhhHHHhhCCCCCcCCHHHHHHHHHhCCCCee
Q 035738 244 EHCLKLLKNCY-KSIPEDGKVIAVELMLPEVPNTSI--ESKSNSD---SDVLMMIQSPGGKERTRHEFMTLATGAGFSGI 317 (333)
Q Consensus 244 ~~~~~lL~~~~-~~L~pgG~l~i~e~~~~~~~~~~~--~~~~~~~---~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~ 317 (333)
.. ++|++++ ++|+|||++++.++.......... ....... .+.. .. ......++.++|.++|+++||+++
T Consensus 119 ~~--~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~l~~~Gf~~~ 194 (250)
T 2p7i_A 119 PV--ALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAE-FA-HGHRCTYALDTLERDASRAGLQVT 194 (250)
T ss_dssp HH--HHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHH-HH-TTCCCCCCHHHHHHHHHHTTCEEE
T ss_pred HH--HHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhccccc-cc-ccccccCCHHHHHHHHHHCCCeEE
Confidence 64 8999999 999999999998874332100000 0000000 0000 01 123456799999999999999999
Q ss_pred EEeec
Q 035738 318 SCERA 322 (333)
Q Consensus 318 ~~~~~ 322 (333)
++...
T Consensus 195 ~~~~~ 199 (250)
T 2p7i_A 195 YRSGI 199 (250)
T ss_dssp EEEEE
T ss_pred EEeee
Confidence 88653
No 53
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=99.34 E-value=4.7e-12 Score=109.63 Aligned_cols=122 Identities=17% Similarity=0.162 Sum_probs=88.7
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CCe-----------------------EEEccC
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PCM-----------------------WILHDW 241 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~gv-----------------------~vLh~~ 241 (333)
.+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++. +++ .++|++
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 129 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT 129 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhc
Confidence 46779999999999999999987 568999999 8888877653 111 667777
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEee
Q 035738 242 NDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCER 321 (333)
Q Consensus 242 ~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 321 (333)
++.. ++|++++++|+|||++++.+......... . .+... ... ......++.+++.++++++||+++++..
T Consensus 130 ~~~~--~~l~~~~~~L~pgG~l~i~~~~~~~~~~~---~---~~~~~-~~~-~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 199 (242)
T 3l8d_A 130 EEPL--RALNEIKRVLKSDGYACIAILGPTAKPRE---N---SYPRL-YGK-DVVCNTMMPWEFEQLVKEQGFKVVDGIG 199 (242)
T ss_dssp SCHH--HHHHHHHHHEEEEEEEEEEEECTTCGGGG---G---GGGGG-GTC-CCSSCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred cCHH--HHHHHHHHHhCCCeEEEEEEcCCcchhhh---h---hhhhh-ccc-cccccCCCHHHHHHHHHHcCCEEEEeec
Confidence 6654 89999999999999999998654332110 0 11111 110 1123457899999999999999998875
Q ss_pred c
Q 035738 322 A 322 (333)
Q Consensus 322 ~ 322 (333)
.
T Consensus 200 ~ 200 (242)
T 3l8d_A 200 V 200 (242)
T ss_dssp E
T ss_pred c
Confidence 4
No 54
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=99.34 E-value=2.8e-12 Score=113.61 Aligned_cols=120 Identities=17% Similarity=0.222 Sum_probs=90.1
Q ss_pred CCCeEEEEcCCc---cHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----C----------------------------
Q 035738 190 NIKQLVDVGGGI---GVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----P---------------------------- 233 (333)
Q Consensus 190 ~~~~vlDVGgG~---G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~---------------------------- 233 (333)
+..+|||||||+ |.++..+.+.+|+.+++++|+ |.+++.+++. .
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 457999999999 999888888999999999999 8888766531 0
Q ss_pred --C-e---EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHH
Q 035738 234 --C-M---WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMT 307 (333)
Q Consensus 234 --g-v---~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ 307 (333)
. + .+||++++++..++|++++++|+|||+|++.+...+. ... .....+.+.... .....++.++|.+
T Consensus 157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~---~~~---~~~~~~~~~~~~-~~~~~~s~~ei~~ 229 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG---LPA---QQKLARITRENL-GEGWARTPEEIER 229 (274)
T ss_dssp SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS---CHH---HHHHHHHHHHHH-SCCCCBCHHHHHH
T ss_pred CCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc---hHH---HHHHHHHHHhcC-CCCccCCHHHHHH
Confidence 1 1 6789999877789999999999999999999986532 111 111222222221 2456789999999
Q ss_pred HHHhCCCCeeE
Q 035738 308 LATGAGFSGIS 318 (333)
Q Consensus 308 ll~~aGf~~~~ 318 (333)
+| .||++++
T Consensus 230 ~l--~G~~l~~ 238 (274)
T 2qe6_A 230 QF--GDFELVE 238 (274)
T ss_dssp TT--TTCEECT
T ss_pred Hh--CCCeEcc
Confidence 99 6997765
No 55
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=99.33 E-value=3e-12 Score=108.32 Aligned_cols=121 Identities=7% Similarity=-0.003 Sum_probs=86.6
Q ss_pred HHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------------------CCe------
Q 035738 181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------------------PCM------ 235 (333)
Q Consensus 181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------------~gv------ 235 (333)
+++.+. .....+|||||||+|..+..++++ ..+++++|+ +.+++.|++. +++
T Consensus 14 ~~~~l~-~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d 90 (203)
T 1pjz_A 14 YWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGD 90 (203)
T ss_dssp HHHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEEC
T ss_pred HHHhcc-cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECc
Confidence 334444 557789999999999999999987 458999999 8888766421 111
Q ss_pred ------------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCC
Q 035738 236 ------------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGG 297 (333)
Q Consensus 236 ------------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g 297 (333)
.++|++++++..+++++++++|+|||+++++....+... . ....
T Consensus 91 ~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~-~-----------------~~~~ 152 (203)
T 1pjz_A 91 FFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQAL-L-----------------EGPP 152 (203)
T ss_dssp CSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSS-S-----------------SSCC
T ss_pred cccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccc-c-----------------CCCC
Confidence 367888877777899999999999999655554332110 0 0001
Q ss_pred CcCCHHHHHHHHHhCCCCeeEEeecC
Q 035738 298 KERTRHEFMTLATGAGFSGISCERAI 323 (333)
Q Consensus 298 ~~rt~~e~~~ll~~aGf~~~~~~~~~ 323 (333)
...+.+++.+++++ ||+++.+....
T Consensus 153 ~~~~~~el~~~~~~-gf~i~~~~~~~ 177 (203)
T 1pjz_A 153 FSVPQTWLHRVMSG-NWEVTKVGGQD 177 (203)
T ss_dssp CCCCHHHHHHTSCS-SEEEEEEEESS
T ss_pred CCCCHHHHHHHhcC-CcEEEEecccc
Confidence 12478999999998 99988776543
No 56
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=99.33 E-value=3.1e-12 Score=118.86 Aligned_cols=124 Identities=15% Similarity=0.165 Sum_probs=90.7
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCCCC--------------CCe-----------------
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVPPH--------------PCM----------------- 235 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~--------------~gv----------------- 235 (333)
.+..+|||||||+|..+..+++.+ |+.+++++|+ +.+++.++++ +++
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 467899999999999999999987 7899999999 7777665421 111
Q ss_pred ------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHH
Q 035738 236 ------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRH 303 (333)
Q Consensus 236 ------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~ 303 (333)
.++|++++.. ++|++++++|+|||++++.+...+...... .......... ..+..++.+
T Consensus 162 ~~~~~fD~V~~~~~l~~~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~------~~~~~~~~~~-~~~~~~~~~ 232 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLSTNKL--ALFKEIHRVLRDGGELYFSDVYADRRLSEA------AQQDPILYGE-CLGGALYLE 232 (383)
T ss_dssp CCTTCEEEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEEEESSCCCHH------HHHCHHHHHT-TCTTCCBHH
T ss_pred CCCCCEEEEEEccchhcCCCHH--HHHHHHHHHcCCCCEEEEEEeccccccCHh------HhhhHHHhhc-ccccCCCHH
Confidence 5666676654 899999999999999999998765421110 0111111211 245567899
Q ss_pred HHHHHHHhCCCCeeEEee
Q 035738 304 EFMTLATGAGFSGISCER 321 (333)
Q Consensus 304 e~~~ll~~aGf~~~~~~~ 321 (333)
+|.++|+++||+.+++..
T Consensus 233 ~~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 233 DFRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp HHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHCCCceEEEEe
Confidence 999999999999887654
No 57
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=99.32 E-value=1.7e-12 Score=121.91 Aligned_cols=132 Identities=14% Similarity=0.154 Sum_probs=96.5
Q ss_pred hHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC--C------------------C-
Q 035738 177 VMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH--P------------------C- 234 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~------------------g- 234 (333)
....+++.+. ..+..+|||||||+|.++..++++. .+++++|+ +.+++.+++. + +
T Consensus 95 ~~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~g--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 171 (416)
T 4e2x_A 95 LARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEAG--VRHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRTEGP 171 (416)
T ss_dssp HHHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHTT--CEEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHHHCC
T ss_pred HHHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHcC--CcEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcccCCCC
Confidence 3456666665 6678899999999999999999864 48999999 7888877653 1 0
Q ss_pred --e----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHH
Q 035738 235 --M----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTL 308 (333)
Q Consensus 235 --v----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~l 308 (333)
+ ++||++++.. .+|++++++|+|||++++..+..... .. ...+..+. . .....++.++|.++
T Consensus 172 fD~I~~~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~-----~~-~~~~~~~~---~-~~~~~~s~~~l~~l 239 (416)
T 4e2x_A 172 ANVIYAANTLCHIPYVQ--SVLEGVDALLAPDGVFVFEDPYLGDI-----VA-KTSFDQIF---D-EHFFLFSATSVQGM 239 (416)
T ss_dssp EEEEEEESCGGGCTTHH--HHHHHHHHHEEEEEEEEEEEECHHHH-----HH-HTCGGGCS---T-TCCEECCHHHHHHH
T ss_pred EEEEEECChHHhcCCHH--HHHHHHHHHcCCCeEEEEEeCChHHh-----hh-hcchhhhh---h-hhhhcCCHHHHHHH
Confidence 0 7888888654 89999999999999999976643210 00 00011110 0 23445789999999
Q ss_pred HHhCCCCeeEEeecC
Q 035738 309 ATGAGFSGISCERAI 323 (333)
Q Consensus 309 l~~aGf~~~~~~~~~ 323 (333)
++++||+++++...+
T Consensus 240 l~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 240 AQRCGFELVDVQRLP 254 (416)
T ss_dssp HHHTTEEEEEEEEEC
T ss_pred HHHcCCEEEEEEEcc
Confidence 999999999998765
No 58
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=99.31 E-value=2.6e-12 Score=114.29 Aligned_cols=135 Identities=15% Similarity=0.122 Sum_probs=91.7
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe----------------
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM---------------- 235 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv---------------- 235 (333)
.++..++ . ...+|||||||+|.++..+++. ..+++++|+ +.+++.+++. +++
T Consensus 60 ~~l~~~~-~-~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 135 (285)
T 4htf_A 60 RVLAEMG-P-QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLET 135 (285)
T ss_dssp HHHHHTC-S-SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSS
T ss_pred HHHHhcC-C-CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCC
Confidence 4444443 2 3679999999999999999988 568999999 7887766531 111
Q ss_pred --------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhh-------CCCCCcC
Q 035738 236 --------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQ-------SPGGKER 300 (333)
Q Consensus 236 --------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~-------~~~g~~r 300 (333)
.++|++++.. ++|++++++|+|||++++.++........ ......+....... ......+
T Consensus 136 ~fD~v~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (285)
T 4htf_A 136 PVDLILFHAVLEWVADPR--SVLQTLWSVLRPGGVLSLMFYNAHGLLMH---NMVAGNFDYVQAGMPKKKKRTLSPDYPR 210 (285)
T ss_dssp CEEEEEEESCGGGCSCHH--HHHHHHHHTEEEEEEEEEEEEBHHHHHHH---HHHTTCHHHHHTTCCCC----CCCSCCB
T ss_pred CceEEEECchhhcccCHH--HHHHHHHHHcCCCeEEEEEEeCCchHHHH---HHHhcCHHHHhhhccccccccCCCCCCC
Confidence 6677787664 89999999999999999998754321000 00000001110000 0123456
Q ss_pred CHHHHHHHHHhCCCCeeEEeecC
Q 035738 301 TRHEFMTLATGAGFSGISCERAI 323 (333)
Q Consensus 301 t~~e~~~ll~~aGf~~~~~~~~~ 323 (333)
+.++|.++|+++||+++++....
T Consensus 211 ~~~~l~~~l~~aGf~v~~~~~~~ 233 (285)
T 4htf_A 211 DPTQVYLWLEEAGWQIMGKTGVR 233 (285)
T ss_dssp CHHHHHHHHHHTTCEEEEEEEES
T ss_pred CHHHHHHHHHHCCCceeeeeeEE
Confidence 89999999999999999887764
No 59
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=99.30 E-value=6.8e-12 Score=107.11 Aligned_cols=123 Identities=16% Similarity=0.161 Sum_probs=84.5
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------C-----Ce---------------------
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------P-----CM--------------------- 235 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-----gv--------------------- 235 (333)
.+..+|||||||+|.++..+++..|..+++++|+ +.+++.+++. + ++
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 107 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT 107 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence 4567999999999999999999999899999999 7888766431 0 11
Q ss_pred --EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHH----HHH
Q 035738 236 --WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFM----TLA 309 (333)
Q Consensus 236 --~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~----~ll 309 (333)
.++|++++++..++|++++++|+|||.+++.... +.... +.......+... ......+.+++. +++
T Consensus 108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~-~~~~~------~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~l~ 179 (219)
T 3jwg_A 108 VIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNK-EYNFH------YGNLFEGNLRHR-DHRFEWTRKEFQTWAVKVA 179 (219)
T ss_dssp EESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBG-GGGGC------CCCT-----GGG-CCTTSBCHHHHHHHHHHHH
T ss_pred EHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccch-hhhhh------hcccCccccccc-CceeeecHHHHHHHHHHHH
Confidence 7788899887789999999999999965554442 21100 000000011111 123346888888 788
Q ss_pred HhCCCCeeEEe
Q 035738 310 TGAGFSGISCE 320 (333)
Q Consensus 310 ~~aGf~~~~~~ 320 (333)
+++||++ ++.
T Consensus 180 ~~~Gf~v-~~~ 189 (219)
T 3jwg_A 180 EKYGYSV-RFL 189 (219)
T ss_dssp HHHTEEE-EEE
T ss_pred HHCCcEE-EEE
Confidence 8999964 444
No 60
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=99.30 E-value=3.5e-12 Score=110.18 Aligned_cols=111 Identities=15% Similarity=0.187 Sum_probs=86.3
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-C------Ce----------------------EEEccC
Q 035738 192 KQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-P------CM----------------------WILHDW 241 (333)
Q Consensus 192 ~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~------gv----------------------~vLh~~ 241 (333)
.+|||||||+|.++..+++ +..+++++|+ +.+++.+++. . .+ .++|++
T Consensus 68 ~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~ 145 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCAI 145 (235)
T ss_dssp EEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTTS
T ss_pred CCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhcC
Confidence 5999999999999998876 5678999999 7887766432 0 01 567888
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEee
Q 035738 242 NDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCER 321 (333)
Q Consensus 242 ~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 321 (333)
++++..++|++++++|+|||++++.+......... ....++.++|.++|+++||+++++..
T Consensus 146 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~~Gf~~~~~~~ 206 (235)
T 3lcc_A 146 EPEMRPAWAKSMYELLKPDGELITLMYPITDHVGG-------------------PPYKVDVSTFEEVLVPIGFKAVSVEE 206 (235)
T ss_dssp CGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSC-------------------SSCCCCHHHHHHHHGGGTEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCC-------------------CCccCCHHHHHHHHHHcCCeEEEEEe
Confidence 87778899999999999999999988754432110 01125789999999999999999876
Q ss_pred cC
Q 035738 322 AI 323 (333)
Q Consensus 322 ~~ 323 (333)
.+
T Consensus 207 ~~ 208 (235)
T 3lcc_A 207 NP 208 (235)
T ss_dssp CT
T ss_pred cC
Confidence 64
No 61
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=99.30 E-value=3.3e-12 Score=113.35 Aligned_cols=133 Identities=14% Similarity=0.126 Sum_probs=91.1
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-C---------------C---e----
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-P---------------C---M---- 235 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~---------------g---v---- 235 (333)
.+++.+. ..+..+|||||||+|.++..+++ +..+++++|+ +.+++.+++. + + +
T Consensus 48 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~ 124 (279)
T 3ccf_A 48 DLLQLLN-PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVFSN 124 (279)
T ss_dssp HHHHHHC-CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEEEE
T ss_pred HHHHHhC-CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEEEc
Confidence 4455555 56778999999999999999998 7789999999 7887766531 1 1 1
Q ss_pred EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHh------hCCCCCcCCHHHHHHHH
Q 035738 236 WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMI------QSPGGKERTRHEFMTLA 309 (333)
Q Consensus 236 ~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~------~~~~g~~rt~~e~~~ll 309 (333)
.++|++++.. ++|++++++|+|||++++..+..... ... ...+....... .......++.++|.++|
T Consensus 125 ~~l~~~~d~~--~~l~~~~~~LkpgG~l~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 197 (279)
T 3ccf_A 125 AMLHWVKEPE--AAIASIHQALKSGGRFVAEFGGKGNI--KYI---LEALYNALETLGIHNPQALNPWYFPSIGEYVNIL 197 (279)
T ss_dssp SCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEECTTTT--HHH---HHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHH
T ss_pred chhhhCcCHH--HHHHHHHHhcCCCcEEEEEecCCcch--HHH---HHHHHHHHHhcCCccccCcCceeCCCHHHHHHHH
Confidence 6677777655 89999999999999999987643221 000 00011110000 00012356899999999
Q ss_pred HhCCCCeeEEeec
Q 035738 310 TGAGFSGISCERA 322 (333)
Q Consensus 310 ~~aGf~~~~~~~~ 322 (333)
+++||+++++...
T Consensus 198 ~~aGf~~~~~~~~ 210 (279)
T 3ccf_A 198 EKQGFDVTYAALF 210 (279)
T ss_dssp HHHTEEEEEEEEE
T ss_pred HHcCCEEEEEEEe
Confidence 9999999887654
No 62
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=99.29 E-value=6.1e-12 Score=108.18 Aligned_cols=130 Identities=14% Similarity=0.113 Sum_probs=88.6
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----C------Ce--------------------
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----P------CM-------------------- 235 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~------gv-------------------- 235 (333)
+.+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++. . .+
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 105 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFA 105 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEE
Confidence 346789999999999999999988 568999999 7777665431 0 00
Q ss_pred ---EEEccCCh-hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhC--------------CCC
Q 035738 236 ---WILHDWND-EHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQS--------------PGG 297 (333)
Q Consensus 236 ---~vLh~~~~-~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~--------------~~g 297 (333)
.++|++++ +...++|++++++|+|||++++.+........ .. .......+...... ...
T Consensus 106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (235)
T 3sm3_A 106 VMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLK--LY-RKRYLHDFPITKEEGSFLARDPETGETEFIA 182 (235)
T ss_dssp EEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSH--HH-HHHHHHHHHHHCSTTEEEEECTTTCCEEEEE
T ss_pred EEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHH--HH-HHHhhhhccchhhhcceEecccccCCcceee
Confidence 66777765 44668999999999999999999986543210 00 00000011010000 001
Q ss_pred CcCCHHHHHHHHHhCCCCeeEEeec
Q 035738 298 KERTRHEFMTLATGAGFSGISCERA 322 (333)
Q Consensus 298 ~~rt~~e~~~ll~~aGf~~~~~~~~ 322 (333)
..++.++|.++|+++||+++++...
T Consensus 183 ~~~~~~~l~~ll~~aGf~~~~~~~~ 207 (235)
T 3sm3_A 183 HHFTEKELVFLLTDCRFEIDYFRVK 207 (235)
T ss_dssp ECBCHHHHHHHHHTTTEEEEEEEEE
T ss_pred EeCCHHHHHHHHHHcCCEEEEEEec
Confidence 3578999999999999999988643
No 63
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=99.29 E-value=3.8e-12 Score=108.56 Aligned_cols=122 Identities=12% Similarity=0.116 Sum_probs=84.1
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------C-----Ce--------------------
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------P-----CM-------------------- 235 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-----gv-------------------- 235 (333)
..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++. + ++
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v 106 (217)
T 3jwh_A 27 QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAA 106 (217)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEE
T ss_pred hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEE
Confidence 34567999999999999999999999899999999 7887766431 0 11
Q ss_pred ---EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHH----HH
Q 035738 236 ---WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFM----TL 308 (333)
Q Consensus 236 ---~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~----~l 308 (333)
.++|++++++..++|++++++|+|||.+++........ .+.......+... .....++.+++. ++
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 178 (217)
T 3jwh_A 107 TVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNV-------KFANLPAGKLRHK-DHRFEWTRSQFQNWANKI 178 (217)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHH-------HTC------------CCSCBCHHHHHHHHHHH
T ss_pred eeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccch-------hhccccccccccc-ccccccCHHHHHHHHHHH
Confidence 77888888877899999999999999766665421100 0000000000000 123346888888 88
Q ss_pred HHhCCCCee
Q 035738 309 ATGAGFSGI 317 (333)
Q Consensus 309 l~~aGf~~~ 317 (333)
++++||+++
T Consensus 179 ~~~~Gf~v~ 187 (217)
T 3jwh_A 179 TERFAYNVQ 187 (217)
T ss_dssp HHHSSEEEE
T ss_pred HHHcCceEE
Confidence 999999754
No 64
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=99.29 E-value=2.9e-12 Score=111.87 Aligned_cols=140 Identities=15% Similarity=0.112 Sum_probs=90.4
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CCe-------------------
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PCM------------------- 235 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~gv------------------- 235 (333)
..+...++ .....+|||||||+|.++..+++..+. +++++|+ +.+++.+++. .++
T Consensus 34 ~~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 111 (253)
T 3g5l_A 34 HELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNV 111 (253)
T ss_dssp HHHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEE
T ss_pred HHHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEE
Confidence 34455444 446789999999999999999998765 8999999 7887766432 111
Q ss_pred ----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC-----------CCCCccccccccchh-----hHHHhhCC
Q 035738 236 ----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPE-----------VPNTSIESKSNSDSD-----VLMMIQSP 295 (333)
Q Consensus 236 ----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~-----------~~~~~~~~~~~~~~d-----~~m~~~~~ 295 (333)
.++|++++. .++|++++++|+|||++++....... .............++ ........
T Consensus 112 v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (253)
T 3g5l_A 112 VLSSLALHYIASF--DDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDV 189 (253)
T ss_dssp EEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEE
T ss_pred EEEchhhhhhhhH--HHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccC
Confidence 667777654 49999999999999999997553210 000000000000000 00000000
Q ss_pred CCCcCCHHHHHHHHHhCCCCeeEEeec
Q 035738 296 GGKERTRHEFMTLATGAGFSGISCERA 322 (333)
Q Consensus 296 ~g~~rt~~e~~~ll~~aGf~~~~~~~~ 322 (333)
....++.++|.++|+++||+++++...
T Consensus 190 ~~~~~t~~~~~~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 190 QKYHRTVTTYIQTLLKNGFQINSVIEP 216 (253)
T ss_dssp EEECCCHHHHHHHHHHTTEEEEEEECC
T ss_pred ccEecCHHHHHHHHHHcCCeeeeeecC
Confidence 112348999999999999999998754
No 65
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=99.28 E-value=1.9e-12 Score=113.34 Aligned_cols=134 Identities=11% Similarity=0.097 Sum_probs=89.3
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-CC------------------e----
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-PC------------------M---- 235 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~g------------------v---- 235 (333)
.++..++ .....+|||||||+|.++..+++.+|..+++++|+ +.+++.+++. ++ +
T Consensus 24 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~ 102 (259)
T 2p35_A 24 DLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLYAN 102 (259)
T ss_dssp HHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEEEE
T ss_pred HHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEEEe
Confidence 4556555 66778999999999999999999999999999999 7888766431 11 1
Q ss_pred EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccc---cchhhHHHhhCCCCCcCCHHHHHHHHHhC
Q 035738 236 WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSN---SDSDVLMMIQSPGGKERTRHEFMTLATGA 312 (333)
Q Consensus 236 ~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~---~~~d~~m~~~~~~g~~rt~~e~~~ll~~a 312 (333)
.++|++++.. ++|++++++|+|||++++.++............... .+..............++.++|.++|+++
T Consensus 103 ~~l~~~~~~~--~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 180 (259)
T 2p35_A 103 AVFQWVPDHL--AVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNALSPK 180 (259)
T ss_dssp SCGGGSTTHH--HHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHHHHGGG
T ss_pred CchhhCCCHH--HHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHHHHHhc
Confidence 6677776554 899999999999999999986432210000000000 00000000000123457899999999999
Q ss_pred CCCe
Q 035738 313 GFSG 316 (333)
Q Consensus 313 Gf~~ 316 (333)
||++
T Consensus 181 Gf~v 184 (259)
T 2p35_A 181 SSRV 184 (259)
T ss_dssp EEEE
T ss_pred CCce
Confidence 9964
No 66
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=99.28 E-value=2e-12 Score=110.77 Aligned_cols=137 Identities=16% Similarity=0.185 Sum_probs=92.0
Q ss_pred HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------------C-C---e-
Q 035738 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------------P-C---M- 235 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------------~-g---v- 235 (333)
...+++.++ .+..+|||||||+|.++..+++. + .+++++|+ +.+++.+++. + + +
T Consensus 22 ~~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~v 97 (230)
T 3cc8_A 22 NPNLLKHIK--KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQFDCV 97 (230)
T ss_dssp CHHHHTTCC--TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTSSEEEESCTTTCCCCSCTTCEEEE
T ss_pred HHHHHHHhc--cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhCCcEEEcchhhcCCCCCCCccCEE
Confidence 345555443 46789999999999999999988 4 89999999 7777766532 0 1 1
Q ss_pred ---EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCcccccc-ccch--hhHHHhhCCCCCcCCHHHHHHHH
Q 035738 236 ---WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKS-NSDS--DVLMMIQSPGGKERTRHEFMTLA 309 (333)
Q Consensus 236 ---~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~-~~~~--d~~m~~~~~~g~~rt~~e~~~ll 309 (333)
.++|++++.. .+|+++++.|+|||++++..+....... ..... ..+. ....... .....++.++|.++|
T Consensus 98 ~~~~~l~~~~~~~--~~l~~~~~~L~~gG~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l 172 (230)
T 3cc8_A 98 IFGDVLEHLFDPW--AVIEKVKPYIKQNGVILASIPNVSHISV--LAPLLAGNWTYTEYGLLDK-THIRFFTFNEMLRMF 172 (230)
T ss_dssp EEESCGGGSSCHH--HHHHHTGGGEEEEEEEEEEEECTTSHHH--HHHHHTTCCCCBSSSTTBT-TCCCCCCHHHHHHHH
T ss_pred EECChhhhcCCHH--HHHHHHHHHcCCCCEEEEEeCCcchHHH--HHHHhcCCceeccCCCCCc-ceEEEecHHHHHHHH
Confidence 6677777664 8999999999999999998864322100 00000 0000 0000000 122457899999999
Q ss_pred HhCCCCeeEEeecC
Q 035738 310 TGAGFSGISCERAI 323 (333)
Q Consensus 310 ~~aGf~~~~~~~~~ 323 (333)
+++||+++++....
T Consensus 173 ~~~Gf~~~~~~~~~ 186 (230)
T 3cc8_A 173 LKAGYSISKVDRVY 186 (230)
T ss_dssp HHTTEEEEEEEEEE
T ss_pred HHcCCeEEEEEecc
Confidence 99999999887653
No 67
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=99.26 E-value=1.6e-11 Score=109.79 Aligned_cols=120 Identities=13% Similarity=0.078 Sum_probs=81.5
Q ss_pred CCCCeEEEEcCCccHHHH----HHHHHCCCCeE--EEeec-hhHhhhCCCC----------------------C------
Q 035738 189 DNIKQLVDVGGGIGVTLQ----AITTKYPYIKG--INFDL-PHVIEHVPPH----------------------P------ 233 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~----~l~~~~p~~~~--~~~D~-~~~~~~a~~~----------------------~------ 233 (333)
.+..+|||||||+|.++. .+..++|+.++ +++|. +.+++.+++. +
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 356799999999997654 44566788854 99998 7777643210 0
Q ss_pred ---C----e---EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCC---CCCcC
Q 035738 234 ---C----M---WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSP---GGKER 300 (333)
Q Consensus 234 ---g----v---~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~---~g~~r 300 (333)
+ | ++||+++|.. +.|++++++|||||++++.+...+. .+ ...+.-.. .... ....+
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~----~~----~~~~~~~~-~~~~~~~~~~~~ 199 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKDIP--ATLKFFHSLLGTNAKMLIIVVSGSS----GW----DKLWKKYG-SRFPQDDLCQYI 199 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSCHH--HHHHHHHHTEEEEEEEEEEEECTTS----HH----HHHHHHHG-GGSCCCTTCCCC
T ss_pred cCCCceeEEEEeeeeeecCCHH--HHHHHHHHHcCCCcEEEEEEecCCc----cH----HHHHHHHH-HhccCCCcccCC
Confidence 1 1 6888998776 8999999999999999999753211 10 00111000 0011 12457
Q ss_pred CHHHHHHHHHhCCCCeeEE
Q 035738 301 TRHEFMTLATGAGFSGISC 319 (333)
Q Consensus 301 t~~e~~~ll~~aGf~~~~~ 319 (333)
+.++|.++|+++||+.++.
T Consensus 200 ~~~~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 200 TSDDLTQMLDNLGLKYECY 218 (292)
T ss_dssp CHHHHHHHHHHHTCCEEEE
T ss_pred CHHHHHHHHHHCCCceEEE
Confidence 8999999999999998764
No 68
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=99.26 E-value=1.9e-11 Score=108.02 Aligned_cols=139 Identities=10% Similarity=0.048 Sum_probs=92.2
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hh------HhhhCCCC-------------------
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PH------VIEHVPPH------------------- 232 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~------~~~~a~~~------------------- 232 (333)
.+++.++ ..+..+|||||||+|.++..+++++ |+.+++++|+ +. +++.++++
T Consensus 34 ~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 112 (275)
T 3bkx_A 34 AIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLS 112 (275)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTT
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhh
Confidence 4555555 6678899999999999999999996 7789999999 53 44332210
Q ss_pred ------C-C---e----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCcccccc-ccchhhHHHhhC---
Q 035738 233 ------P-C---M----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKS-NSDSDVLMMIQS--- 294 (333)
Q Consensus 233 ------~-g---v----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~-~~~~d~~m~~~~--- 294 (333)
+ + + .++|++++.. .+++.++..++|||++++.+...+...... .... .......+....
T Consensus 113 ~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 189 (275)
T 3bkx_A 113 DDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAVCDHVDVAEWSMQPTALDQ-IGHLQAAMIQGLLYAIAPSD 189 (275)
T ss_dssp TCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTTCSEEEEEEECSSCSSGGG-HHHHHHHHHHHHHHHHSCCT
T ss_pred hccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCCCCEEEEEEecCCCCchhh-hhHHHHHHHHHHHhhccccc
Confidence 0 1 1 6677777765 478888888888999999998776532110 0000 000000010000
Q ss_pred -CC-CCcCCHHHHHHHHHhCCCCeeEEeec
Q 035738 295 -PG-GKERTRHEFMTLATGAGFSGISCERA 322 (333)
Q Consensus 295 -~~-g~~rt~~e~~~ll~~aGf~~~~~~~~ 322 (333)
.+ ...++.++|.++++++||+++++...
T Consensus 190 ~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 190 VANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp TCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred cccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 01 13578999999999999999887765
No 69
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.25 E-value=1.9e-11 Score=101.80 Aligned_cols=112 Identities=13% Similarity=0.155 Sum_probs=85.3
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------------C-C-e-----
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------------P-C-M----- 235 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------------~-g-v----- 235 (333)
.++..+ ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++. + + .
T Consensus 38 ~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~ 113 (195)
T 3cgg_A 38 RLIDAM--APRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVS 113 (195)
T ss_dssp HHHHHH--SCTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEE
T ss_pred HHHHHh--ccCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEE
Confidence 344444 446789999999999999999987 568999999 7777665431 0 1 1
Q ss_pred --EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCC
Q 035738 236 --WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAG 313 (333)
Q Consensus 236 --~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aG 313 (333)
.++|+++++....+|+++.+.|+|||++++..... ..++.++|.++++++|
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~---------------------------~~~~~~~~~~~l~~~G 166 (195)
T 3cgg_A 114 AGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAG---------------------------RGWVFGDFLEVAERVG 166 (195)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETT---------------------------SSCCHHHHHHHHHHHT
T ss_pred CCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCC---------------------------CCcCHHHHHHHHHHcC
Confidence 35666777777899999999999999999865421 1246889999999999
Q ss_pred CCeeEEeec
Q 035738 314 FSGISCERA 322 (333)
Q Consensus 314 f~~~~~~~~ 322 (333)
|+++++...
T Consensus 167 f~~~~~~~~ 175 (195)
T 3cgg_A 167 LELENAFES 175 (195)
T ss_dssp EEEEEEESS
T ss_pred CEEeeeecc
Confidence 999887644
No 70
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=99.25 E-value=6.6e-12 Score=109.08 Aligned_cols=129 Identities=15% Similarity=0.079 Sum_probs=88.7
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CC------------------------e----
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PC------------------------M---- 235 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~g------------------------v---- 235 (333)
.....+|||||||+|.++..+++..+ +++++|+ +.+++.+++. .+ +
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 45678999999999999999999988 7999999 7888776432 11 1
Q ss_pred EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccc----cccccchhhHHHhhCCCCCcCCHHHHHHHHHh
Q 035738 236 WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIE----SKSNSDSDVLMMIQSPGGKERTRHEFMTLATG 311 (333)
Q Consensus 236 ~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~----~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~ 311 (333)
.++|++++++..++|++++++|+|||+++|.+...++....... ........-.+.. ......++.+++.++|
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-- 208 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEH-GIRPGIFTAEDIELYF-- 208 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTT-TCCCCCCCHHHHHHHC--
T ss_pred chhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccHHHHHHHhCCCCCchhhhhcccc-CCCCCccCHHHHHHHh--
Confidence 57788887777899999999999999999999865431000000 0000000001100 0112246899999999
Q ss_pred CCCCeeEEee
Q 035738 312 AGFSGISCER 321 (333)
Q Consensus 312 aGf~~~~~~~ 321 (333)
+||++++...
T Consensus 209 aGf~~~~~~~ 218 (245)
T 3ggd_A 209 PDFEILSQGE 218 (245)
T ss_dssp TTEEEEEEEC
T ss_pred CCCEEEeccc
Confidence 9999887643
No 71
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=99.23 E-value=3e-11 Score=101.13 Aligned_cols=122 Identities=15% Similarity=0.085 Sum_probs=89.4
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe-----------------
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM----------------- 235 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv----------------- 235 (333)
.+++.++ ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++. +++
T Consensus 23 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 99 (199)
T 2xvm_A 23 EVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYD 99 (199)
T ss_dssp HHHHHTT-TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEE
T ss_pred HHHHHhh-ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCce
Confidence 3444444 445679999999999999999987 568999999 7787765431 111
Q ss_pred -----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHH
Q 035738 236 -----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLAT 310 (333)
Q Consensus 236 -----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~ 310 (333)
.++|++++++..++|++++++|+|||++++++....+..... ......++.+++.++|+
T Consensus 100 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~ 163 (199)
T 2xvm_A 100 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT----------------VGFPFAFKEGELRRYYE 163 (199)
T ss_dssp EEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCC----------------SCCSCCBCTTHHHHHTT
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCC----------------CCCCCccCHHHHHHHhc
Confidence 567888877778999999999999999999988655431100 01223457889999998
Q ss_pred hCCCCeeEEeec
Q 035738 311 GAGFSGISCERA 322 (333)
Q Consensus 311 ~aGf~~~~~~~~ 322 (333)
+ |++++....
T Consensus 164 ~--f~~~~~~~~ 173 (199)
T 2xvm_A 164 G--WERVKYNED 173 (199)
T ss_dssp T--SEEEEEECC
T ss_pred C--CeEEEeccc
Confidence 6 988877543
No 72
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=99.23 E-value=4.6e-11 Score=101.59 Aligned_cols=120 Identities=16% Similarity=0.142 Sum_probs=83.4
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhh----CCCC--C-C---e----EEEccCCh
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEH----VPPH--P-C---M----WILHDWND 243 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~----a~~~--~-g---v----~vLh~~~~ 243 (333)
..+++.+....+..+|||||||+|.++..+. .+++++|+ +..+.. +... + + + .++| +.
T Consensus 56 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~-~~- 128 (215)
T 2zfu_A 56 DRIARDLRQRPASLVVADFGCGDCRLASSIR-----NPVHCFDLASLDPRVTVCDMAQVPLEDESVDVAVFCLSLM-GT- 128 (215)
T ss_dssp HHHHHHHHTSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCSSTTEEESCTTSCSCCTTCEEEEEEESCCC-SS-
T ss_pred HHHHHHHhccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCCCceEEEeccccCCCCCCCEeEEEEehhcc-cc-
Confidence 3445544434567899999999999998772 57899998 331111 1111 1 1 1 5556 33
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeecC
Q 035738 244 EHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAI 323 (333)
Q Consensus 244 ~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 323 (333)
+...+|++++++|+|||++++.+.... ..+.++|.++++++||+++++....
T Consensus 129 -~~~~~l~~~~~~L~~gG~l~i~~~~~~---------------------------~~~~~~~~~~l~~~Gf~~~~~~~~~ 180 (215)
T 2zfu_A 129 -NIRDFLEEANRVLKPGGLLKVAEVSSR---------------------------FEDVRTFLRAVTKLGFKIVSKDLTN 180 (215)
T ss_dssp -CHHHHHHHHHHHEEEEEEEEEEECGGG---------------------------CSCHHHHHHHHHHTTEEEEEEECCS
T ss_pred -CHHHHHHHHHHhCCCCeEEEEEEcCCC---------------------------CCCHHHHHHHHHHCCCEEEEEecCC
Confidence 345899999999999999999975311 1168999999999999998877666
Q ss_pred CceeEEEEeC
Q 035738 324 GNLWVMEFYK 333 (333)
Q Consensus 324 ~~~~vie~~~ 333 (333)
+...++.+.|
T Consensus 181 ~~~~~~~~~k 190 (215)
T 2zfu_A 181 SHFFLFDFQK 190 (215)
T ss_dssp TTCEEEEEEE
T ss_pred CeEEEEEEEe
Confidence 6666666653
No 73
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=99.21 E-value=2.9e-11 Score=104.57 Aligned_cols=75 Identities=15% Similarity=0.264 Sum_probs=58.6
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----CCe----------------------E-EEc
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----PCM----------------------W-ILH 239 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~gv----------------------~-vLh 239 (333)
....+|||||||+|.++..+++. .+++++|+ +.+++.+++. .++ . ++|
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~ 108 (243)
T 3d2l_A 32 EPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLN 108 (243)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGGG
T ss_pred CCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCchh
Confidence 34589999999999999999887 68999999 7887766531 110 1 455
Q ss_pred cC-ChhHHHHHHHHHHHhCCCCcEEEEE
Q 035738 240 DW-NDEHCLKLLKNCYKSIPEDGKVIAV 266 (333)
Q Consensus 240 ~~-~~~~~~~lL~~~~~~L~pgG~l~i~ 266 (333)
++ ++++..++|++++++|+|||++++.
T Consensus 109 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 136 (243)
T 3d2l_A 109 YLQTEADVKQTFDSAARLLTDGGKLLFD 136 (243)
T ss_dssp GCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 55 4566779999999999999999874
No 74
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=99.20 E-value=5.2e-12 Score=112.98 Aligned_cols=41 Identities=17% Similarity=0.346 Sum_probs=37.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVP 230 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~ 230 (333)
...+|||||||+|.++..+++.++..+++++|+ +.+++.|+
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~ 87 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSAR 87 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHH
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 578999999999999999999999999999999 77777654
No 75
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=99.19 E-value=1.7e-11 Score=107.38 Aligned_cols=127 Identities=13% Similarity=0.092 Sum_probs=83.0
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----CCe-----------------------EEE
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----PCM-----------------------WIL 238 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~gv-----------------------~vL 238 (333)
..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++. +++ .++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 567789999999999999999987 468999999 7787765321 111 667
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCC---CCCcCCHHHHHHHHHhCCCC
Q 035738 239 HDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSP---GGKERTRHEFMTLATGAGFS 315 (333)
Q Consensus 239 h~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~---~g~~rt~~e~~~ll~~aGf~ 315 (333)
|++++.. ++|++++++|+|||++++. ...++. . ........+..+......+ .....+.++|.++|+++||+
T Consensus 115 ~~~~~~~--~~l~~~~~~L~pgG~l~~~-~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 189 (263)
T 2yqz_A 115 HLVPDWP--KVLAEAIRVLKPGGALLEG-WDQAEA-S-PEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLK 189 (263)
T ss_dssp GGCTTHH--HHHHHHHHHEEEEEEEEEE-EEEECC-C-HHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred hhcCCHH--HHHHHHHHHCCCCcEEEEE-ecCCCc-c-HHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCC
Confidence 7777554 8999999999999999988 222210 1 1000000011111110000 11245788999999999999
Q ss_pred eeEEee
Q 035738 316 GISCER 321 (333)
Q Consensus 316 ~~~~~~ 321 (333)
++.+..
T Consensus 190 ~~~~~~ 195 (263)
T 2yqz_A 190 PRTREV 195 (263)
T ss_dssp CEEEEE
T ss_pred cceEEE
Confidence 776543
No 76
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=99.19 E-value=1.1e-10 Score=100.41 Aligned_cols=125 Identities=11% Similarity=0.071 Sum_probs=86.7
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCC----CCCC--------------------e-EEEccC
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVP----PHPC--------------------M-WILHDW 241 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~~~g--------------------v-~vLh~~ 241 (333)
..+..+|||||||+|.++..+++.++..+++++|+ +.+++.++ ..++ . .|+|++
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~ 151 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDV 151 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEEECC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEEEec
Confidence 56778999999999999999999998889999999 77775432 2111 1 556776
Q ss_pred Chh-HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEe
Q 035738 242 NDE-HCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCE 320 (333)
Q Consensus 242 ~~~-~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 320 (333)
+++ ....+|+++.+.|+|||++++. .......... ... . ...+++. +|+++||+.+++.
T Consensus 152 ~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~~~~~-------~~~--~---------~~~~~l~-~l~~~Gf~~~~~~ 211 (230)
T 1fbn_A 152 AQPNQAEILIKNAKWFLKKGGYGMIA-IKARSIDVTK-------DPK--E---------IFKEQKE-ILEAGGFKIVDEV 211 (230)
T ss_dssp CSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCSSS-------CHH--H---------HHHHHHH-HHHHHTEEEEEEE
T ss_pred CChhHHHHHHHHHHHhCCCCcEEEEE-EecCCCCCCC-------CHH--H---------hhHHHHH-HHHHCCCEEEEEE
Confidence 655 3346799999999999999997 3211110000 000 0 1146777 9999999999988
Q ss_pred ecCCc---eeEEEEe
Q 035738 321 RAIGN---LWVMEFY 332 (333)
Q Consensus 321 ~~~~~---~~vie~~ 332 (333)
+...+ +.++.+.
T Consensus 212 ~~~~~~~~~~~v~~~ 226 (230)
T 1fbn_A 212 DIEPFEKDHVMFVGI 226 (230)
T ss_dssp ECTTTSTTEEEEEEE
T ss_pred ccCCCccceEEEEEE
Confidence 77543 5555544
No 77
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.19 E-value=2.6e-11 Score=103.63 Aligned_cols=117 Identities=16% Similarity=0.181 Sum_probs=81.2
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC--------------C-C---e----EEEccCChhHHH
Q 035738 191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH--------------P-C---M----WILHDWNDEHCL 247 (333)
Q Consensus 191 ~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------------~-g---v----~vLh~~~~~~~~ 247 (333)
..+|||||||+|.++..+++. +++|+ +.+++.+++. + + + .+||++++..
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~-- 119 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFVDDPE-- 119 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHH--
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhcCCEEEEcccccCCCCCCCeeEEEEcchHhhccCHH--
Confidence 779999999999999988765 88998 7777765432 1 1 1 6677776654
Q ss_pred HHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHH-HhhCCCCCcCCHHHHHHHHHhCCCCeeEEeec
Q 035738 248 KLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLM-MIQSPGGKERTRHEFMTLATGAGFSGISCERA 322 (333)
Q Consensus 248 ~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m-~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 322 (333)
++|++++++|+|||++++.++..... . ... ...... .........++.++|.++|+++||+++++...
T Consensus 120 ~~l~~~~~~L~pgG~l~i~~~~~~~~----~-~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 120 RALKEAYRILKKGGYLIVGIVDRESF----L-GRE--YEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT 188 (219)
T ss_dssp HHHHHHHHHEEEEEEEEEEEECSSSH----H-HHH--HHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHcCCCcEEEEEEeCCccH----H-HHH--HHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence 89999999999999999988743211 0 000 000000 00001234578999999999999999988755
No 78
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=99.17 E-value=2.2e-10 Score=96.64 Aligned_cols=109 Identities=9% Similarity=0.181 Sum_probs=82.8
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe-----------------
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM----------------- 235 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv----------------- 235 (333)
.++..+. ..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.++++ .++
T Consensus 31 ~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (204)
T 3e05_A 31 VTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDP 109 (204)
T ss_dssp HHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCC
T ss_pred HHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCC
Confidence 3455555 66788999999999999999999999999999999 8888777542 111
Q ss_pred -EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCC
Q 035738 236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGF 314 (333)
Q Consensus 236 -~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf 314 (333)
.++.........++++++.+.|+|||++++...... +.+++.++++++||
T Consensus 110 D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-----------------------------~~~~~~~~l~~~g~ 160 (204)
T 3e05_A 110 DRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAVTLD-----------------------------TLTKAVEFLEDHGY 160 (204)
T ss_dssp SEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEECBHH-----------------------------HHHHHHHHHHHTTC
T ss_pred CEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEecccc-----------------------------cHHHHHHHHHHCCC
Confidence 444444333556899999999999999998665211 25678899999998
Q ss_pred CeeEE
Q 035738 315 SGISC 319 (333)
Q Consensus 315 ~~~~~ 319 (333)
.+++
T Consensus 161 -~~~~ 164 (204)
T 3e05_A 161 -MVEV 164 (204)
T ss_dssp -EEEE
T ss_pred -ceeE
Confidence 4443
No 79
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=99.17 E-value=9e-11 Score=99.06 Aligned_cols=115 Identities=17% Similarity=0.070 Sum_probs=90.0
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe----------------EEEccCChhH
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM----------------WILHDWNDEH 245 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv----------------~vLh~~~~~~ 245 (333)
.+..+|||||||+|.++..+++ .+..+++++|+ +.+++.++++ .++ .|+.+..-+.
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~ 137 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEI 137 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHH
T ss_pred cCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHH
Confidence 4568999999999999999776 57779999999 8888777542 112 4444445555
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeecCCc
Q 035738 246 CLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIGN 325 (333)
Q Consensus 246 ~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~ 325 (333)
..++++++.+.|+|||++++.+.... +.+++.++++++||+.+++.....+
T Consensus 138 ~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~~~~~~~Gf~~~~~~~~~~w 188 (205)
T 3grz_A 138 LLDLIPQLDSHLNEDGQVIFSGIDYL-----------------------------QLPKIEQALAENSFQIDLKMRAGRW 188 (205)
T ss_dssp HHHHGGGSGGGEEEEEEEEEEEEEGG-----------------------------GHHHHHHHHHHTTEEEEEEEEETTE
T ss_pred HHHHHHHHHHhcCCCCEEEEEecCcc-----------------------------cHHHHHHHHHHcCCceEEeeccCCE
Confidence 67899999999999999999766321 2668899999999999999988888
Q ss_pred eeEEEEeC
Q 035738 326 LWVMEFYK 333 (333)
Q Consensus 326 ~~vie~~~ 333 (333)
.+++.-.|
T Consensus 189 ~~~~~~~~ 196 (205)
T 3grz_A 189 IGLAISRK 196 (205)
T ss_dssp EEEEEEEC
T ss_pred EEEEEecc
Confidence 88876543
No 80
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=99.16 E-value=7.2e-11 Score=101.37 Aligned_cols=116 Identities=10% Similarity=0.070 Sum_probs=82.9
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hhHhhhCC----CCCCe---------------------EEEcc
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTK-YPYIKGINFDL-PHVIEHVP----PHPCM---------------------WILHD 240 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~----~~~gv---------------------~vLh~ 240 (333)
+.++.+|||+|||+|.++..+++. .|+-+++++|+ |.+++.++ +.+++ .++++
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d 154 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD 154 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence 778999999999999999999986 58999999999 88876553 22332 45666
Q ss_pred CCh-hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEE
Q 035738 241 WND-EHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISC 319 (333)
Q Consensus 241 ~~~-~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~ 319 (333)
++. ++...+++++++.|||||+++|.......+ ... .. ....++-.+.|+++||+.+++
T Consensus 155 ~~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d--------------~~~-----p~-~~~~~~ev~~L~~~GF~l~e~ 214 (233)
T 4df3_A 155 VAQPEQAAIVVRNARFFLRDGGYMLMAIKARSID--------------VTT-----EP-SEVYKREIKTLMDGGLEIKDV 214 (233)
T ss_dssp CCCTTHHHHHHHHHHHHEEEEEEEEEEEECCHHH--------------HHT-----CC-CHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCChhHHHHHHHHHHhccCCCEEEEEEecccCC--------------CCC-----Ch-HHHHHHHHHHHHHCCCEEEEE
Confidence 542 344578999999999999999875422111 000 00 001234456789999999998
Q ss_pred eecC
Q 035738 320 ERAI 323 (333)
Q Consensus 320 ~~~~ 323 (333)
....
T Consensus 215 i~L~ 218 (233)
T 4df3_A 215 VHLD 218 (233)
T ss_dssp EECT
T ss_pred EccC
Confidence 8764
No 81
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=99.16 E-value=5.6e-11 Score=102.84 Aligned_cols=130 Identities=10% Similarity=0.099 Sum_probs=84.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC--------------------CC---e----E-EEcc
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH--------------------PC---M----W-ILHD 240 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------------------~g---v----~-vLh~ 240 (333)
+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. ++ + . +||+
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~--~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~ 114 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHCC--CcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence 56799999999999999999874 57999999 7887766431 01 1 3 6777
Q ss_pred CC-hhHHHHHHHHHHHhCCCCcEEEEEeeecCCC----CCCccc---cccc-cc----------hhhHHHhhCCC-----
Q 035738 241 WN-DEHCLKLLKNCYKSIPEDGKVIAVELMLPEV----PNTSIE---SKSN-SD----------SDVLMMIQSPG----- 296 (333)
Q Consensus 241 ~~-~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~----~~~~~~---~~~~-~~----------~d~~m~~~~~~----- 296 (333)
++ +++..++|++++++|+|||++++..+..... ...... .... .+ ..+.++.. .+
T Consensus 115 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 193 (246)
T 1y8c_A 115 IIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVR-DGEFYKR 193 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEE-CSSSEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEe-cCCcccc
Confidence 74 3567799999999999999998744321100 000000 0000 00 00001100 01
Q ss_pred ------CCcCCHHHHHHHHHhCCCCeeEEeec
Q 035738 297 ------GKERTRHEFMTLATGAGFSGISCERA 322 (333)
Q Consensus 297 ------g~~rt~~e~~~ll~~aGf~~~~~~~~ 322 (333)
.+.++.++|.++|+++||+++++...
T Consensus 194 ~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~ 225 (246)
T 1y8c_A 194 FDEEHEERAYKEEDIEKYLKHGQLNILDKVDC 225 (246)
T ss_dssp EEEEEEEECCCHHHHHHHHHHTTEEEEEEEES
T ss_pred cEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcc
Confidence 23569999999999999999998754
No 82
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=99.15 E-value=1.3e-10 Score=99.94 Aligned_cols=126 Identities=11% Similarity=0.074 Sum_probs=77.0
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeech-h-HhhhC---CCC------CCe---------------------E
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLP-H-VIEHV---PPH------PCM---------------------W 236 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~-~-~~~~a---~~~------~gv---------------------~ 236 (333)
.+..+|||||||+|.++..+++++|+.+++++|+. . +++.| ++. +++ .
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 45679999999999999999999999999999993 4 44444 442 222 1
Q ss_pred EEccCChhH------HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHH
Q 035738 237 ILHDWNDEH------CLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLAT 310 (333)
Q Consensus 237 vLh~~~~~~------~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~ 310 (333)
+...|+... ...+|++++++|||||++++........ .. ... ....... ........+++.++++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~-~~--~~~--~~~~~~~----~~~~~~~~~el~~~l~ 173 (225)
T 3p2e_A 103 ILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSY-EE--AEI--KKRGLPL----LSKAYFLSEQYKAELS 173 (225)
T ss_dssp EESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC-----------------------CCHHHHHSHHHHHHHH
T ss_pred EeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccc-hh--chh--hhcCCCC----CChhhcchHHHHHHHH
Confidence 212222110 1368999999999999999955433321 00 000 0000000 0000111235999999
Q ss_pred hCCCCeeEEeecC
Q 035738 311 GAGFSGISCERAI 323 (333)
Q Consensus 311 ~aGf~~~~~~~~~ 323 (333)
++||++.++...+
T Consensus 174 ~aGf~v~~~~~~~ 186 (225)
T 3p2e_A 174 NSGFRIDDVKELD 186 (225)
T ss_dssp HHTCEEEEEEEEC
T ss_pred HcCCCeeeeeecC
Confidence 9999988877654
No 83
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=99.15 E-value=3.1e-10 Score=96.65 Aligned_cols=123 Identities=12% Similarity=0.118 Sum_probs=79.3
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhh----CCCC------CCe-------------------EE
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEH----VPPH------PCM-------------------WI 237 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~----a~~~------~gv-------------------~v 237 (333)
..+..+|||||||+|.++..+++.+|..+++++|+ +.+++. +++. +++ .+
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~~ 104 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELHV 104 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEEE
Confidence 55678999999999999999999999999999999 776664 2221 222 11
Q ss_pred Ec--------cCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHH
Q 035738 238 LH--------DWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLA 309 (333)
Q Consensus 238 Lh--------~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll 309 (333)
.. +.+++ .++|++++++|+|||++++........... ....+.. .-......+++.+++
T Consensus 105 ~~~~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~------~~~~~~~-----~~~~~~~~~~l~~~l 171 (218)
T 3mq2_A 105 LMPWGSLLRGVLGSS--PEMLRGMAAVCRPGASFLVALNLHAWRPSV------PEVGEHP-----EPTPDSADEWLAPRY 171 (218)
T ss_dssp ESCCHHHHHHHHTSS--SHHHHHHHHTEEEEEEEEEEEEGGGBTTBC------GGGTTCC-----CCCHHHHHHHHHHHH
T ss_pred EccchhhhhhhhccH--HHHHHHHHHHcCCCcEEEEEeccccccccc------cccccCC-----ccchHHHHHHHHHHH
Confidence 11 11112 479999999999999999944322111000 0000000 001112245688899
Q ss_pred HhCCCCeeEEeecC
Q 035738 310 TGAGFSGISCERAI 323 (333)
Q Consensus 310 ~~aGf~~~~~~~~~ 323 (333)
+++||++.++....
T Consensus 172 ~~aGf~i~~~~~~~ 185 (218)
T 3mq2_A 172 AEAGWKLADCRYLE 185 (218)
T ss_dssp HHTTEEEEEEEEEC
T ss_pred HHcCCCceeeeccc
Confidence 99999998876553
No 84
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=99.15 E-value=3.8e-11 Score=105.27 Aligned_cols=77 Identities=16% Similarity=0.169 Sum_probs=64.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCCCCe-----------------------EEEccCChhH
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPHPCM-----------------------WILHDWNDEH 245 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~gv-----------------------~vLh~~~~~~ 245 (333)
...+|||||||+|.++..+++.+ .+++++|+ +.+++.|++.+++ .++|.++.+
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~~- 115 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDLD- 115 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCHH-
T ss_pred CCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhHH-
Confidence 45789999999999999999877 47899999 8999999876543 667777543
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeeecC
Q 035738 246 CLKLLKNCYKSIPEDGKVIAVELMLP 271 (333)
Q Consensus 246 ~~~lL~~~~~~L~pgG~l~i~e~~~~ 271 (333)
+.+++++++|||||+|++.....+
T Consensus 116 --~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 116 --RFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp --HHHHHHHHHEEEEEEEEEEEECCC
T ss_pred --HHHHHHHHHcCCCCEEEEEECCCC
Confidence 689999999999999999887543
No 85
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=99.13 E-value=1.8e-10 Score=100.85 Aligned_cols=121 Identities=17% Similarity=0.183 Sum_probs=85.0
Q ss_pred CCCeEEEEcCCc---cHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----C--C-------------------------
Q 035738 190 NIKQLVDVGGGI---GVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----P--C------------------------- 234 (333)
Q Consensus 190 ~~~~vlDVGgG~---G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~--g------------------------- 234 (333)
+..+|||||||+ |.....+.+.+|+.+++++|. |.|++.+++. + +
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence 568999999997 344444455789999999999 8999888642 0 0
Q ss_pred ------e---EEEccCChhH-HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHH
Q 035738 235 ------M---WILHDWNDEH-CLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHE 304 (333)
Q Consensus 235 ------v---~vLh~~~~~~-~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e 304 (333)
| .+||++++++ ...+|++++++|+|||+|++.+...+..+. ......+.+... ......||.+|
T Consensus 158 ~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~-----~~~~~~~~~~~~-g~p~~~rs~~e 231 (277)
T 3giw_A 158 LTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQ-----EVGRVAREYAAR-NMPMRLRTHAE 231 (277)
T ss_dssp TTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHH-----HHHHHHHHHHHT-TCCCCCCCHHH
T ss_pred cCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHH-----HHHHHHHHHHhc-CCCCccCCHHH
Confidence 1 5689998875 468999999999999999999987553211 011112222111 11245689999
Q ss_pred HHHHHHhCCCCeeE
Q 035738 305 FMTLATGAGFSGIS 318 (333)
Q Consensus 305 ~~~ll~~aGf~~~~ 318 (333)
+.++|. ||+.++
T Consensus 232 i~~~f~--Glelve 243 (277)
T 3giw_A 232 AEEFFE--GLELVE 243 (277)
T ss_dssp HHHTTT--TSEECT
T ss_pred HHHHhC--CCcccC
Confidence 999994 998654
No 86
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=99.12 E-value=2e-11 Score=103.16 Aligned_cols=131 Identities=9% Similarity=-0.062 Sum_probs=85.6
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----C----------------C-e------EEE
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----P----------------C-M------WIL 238 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~----------------g-v------~vL 238 (333)
..+..+|||||||+|..+..++.. ++.+++++|+ +.+++.+++. + + . .++
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence 445789999999999985555543 5679999999 7777765421 0 1 0 467
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeE
Q 035738 239 HDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGIS 318 (333)
Q Consensus 239 h~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 318 (333)
|+++.++..++|++++++|+|||++++.+...++.............+..........+..++.+++.++|.++||...+
T Consensus 100 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~~ 179 (209)
T 2p8j_A 100 FHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKE 179 (209)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEEE
T ss_pred HhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceeee
Confidence 88877778899999999999999999999876553211100000000000000000012456899999999999987665
Q ss_pred E
Q 035738 319 C 319 (333)
Q Consensus 319 ~ 319 (333)
.
T Consensus 180 ~ 180 (209)
T 2p8j_A 180 D 180 (209)
T ss_dssp E
T ss_pred e
Confidence 4
No 87
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.11 E-value=1.5e-11 Score=106.44 Aligned_cols=115 Identities=11% Similarity=0.075 Sum_probs=76.2
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----CCe--------------------EEEc---
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----PCM--------------------WILH--- 239 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~gv--------------------~vLh--- 239 (333)
.++.+|||||||+|..+..+++..|. +++++|+ |.+++.|++. .++ .++.
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 46789999999999999999887774 7899999 8999888652 111 2221
Q ss_pred -----cCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCC
Q 035738 240 -----DWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGF 314 (333)
Q Consensus 240 -----~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf 314 (333)
...-.+...++++++++|||||++++++........ ...++. -.....+.+...|.++||
T Consensus 138 ~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~~~~~~~~~-------~~~~~~--------~~~~~~~~~~~~L~eaGF 202 (236)
T 3orh_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELM-------KSKYSD--------ITIMFEETQVPALLEAGF 202 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHT-------TTTCSC--------HHHHHHHHTHHHHHHHTC
T ss_pred ecccchhhhcchhhhhhhhhheeCCCCEEEEEecCCchhhh-------hhhhhh--------hhhhhHHHHHHHHHHcCC
Confidence 122234458999999999999999887643221100 000110 001124567788899999
Q ss_pred CeeEE
Q 035738 315 SGISC 319 (333)
Q Consensus 315 ~~~~~ 319 (333)
+.+.+
T Consensus 203 ~~~~i 207 (236)
T 3orh_A 203 RRENI 207 (236)
T ss_dssp CGGGE
T ss_pred eEEEE
Confidence 87654
No 88
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=99.08 E-value=5.3e-11 Score=104.72 Aligned_cols=120 Identities=12% Similarity=-0.035 Sum_probs=79.5
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC-----------------------------------
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP----------------------------------- 231 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------------------------- 231 (333)
..+..+|||||||+|.++..++.... .+++++|+ +.+++.+++
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 44668999999999987765544332 26899999 776663321
Q ss_pred ---------------CC-------Ce------EEEccC-C-hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccc
Q 035738 232 ---------------HP-------CM------WILHDW-N-DEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESK 281 (333)
Q Consensus 232 ---------------~~-------gv------~vLh~~-~-~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~ 281 (333)
.+ .. .+||+. + .++..++|++++++|||||++++.+....+. .
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~-----~-- 204 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS-----Y-- 204 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE-----E--
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCcc-----c--
Confidence 00 11 556653 2 2455689999999999999999997643210 0
Q ss_pred cccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeec
Q 035738 282 SNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERA 322 (333)
Q Consensus 282 ~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 322 (333)
...+- . ......+.++|.++|+++||+++++...
T Consensus 205 --~~g~~-~----~~~~~~~~~~l~~~l~~aGF~i~~~~~~ 238 (263)
T 2a14_A 205 --MVGKR-E----FSCVALEKGEVEQAVLDAGFDIEQLLHS 238 (263)
T ss_dssp --EETTE-E----EECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred --eeCCe-E----eeccccCHHHHHHHHHHCCCEEEEEeec
Confidence 00000 0 0122458999999999999999988754
No 89
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=99.07 E-value=4.1e-11 Score=106.85 Aligned_cols=80 Identities=14% Similarity=0.102 Sum_probs=63.3
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----------------------C------C---
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----------------------P------C--- 234 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------------------~------g--- 234 (333)
..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. + +
T Consensus 55 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD 132 (293)
T 3thr_A 55 QHGCHRVLDVACGTGVDSIMLVEEG--FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFD 132 (293)
T ss_dssp HTTCCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeE
Confidence 3456899999999999999999884 48999999 7888766320 1 1
Q ss_pred -e----EEEccCCh-----hHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738 235 -M----WILHDWND-----EHCLKLLKNCYKSIPEDGKVIAVELM 269 (333)
Q Consensus 235 -v----~vLh~~~~-----~~~~~lL~~~~~~L~pgG~l~i~e~~ 269 (333)
| +++|++++ ++..++|++++++|+|||++++..+.
T Consensus 133 ~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 133 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp EEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 1 35677776 66779999999999999999988763
No 90
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=99.06 E-value=3.9e-10 Score=94.74 Aligned_cols=113 Identities=7% Similarity=-0.009 Sum_probs=81.1
Q ss_pred eEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----CC-------------------e--EEEccCChhH
Q 035738 193 QLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----PC-------------------M--WILHDWNDEH 245 (333)
Q Consensus 193 ~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~g-------------------v--~vLh~~~~~~ 245 (333)
+|||||||+|.++..+++. ..+++++|+ +.+++.+++. .+ + ..+.+++.++
T Consensus 32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~ 109 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIFCHLPSSL 109 (202)
T ss_dssp EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEECCCCCHHH
T ss_pred CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEhhcCCHHH
Confidence 9999999999999999886 468999999 7777765431 01 1 3334456667
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeec
Q 035738 246 CLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERA 322 (333)
Q Consensus 246 ~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 322 (333)
..++|++++++|+|||++++.+....... ...... ......++.+++.++|+ ||+++++...
T Consensus 110 ~~~~l~~~~~~L~pgG~l~~~~~~~~~~~---------~~~~~~----~~~~~~~~~~~l~~~l~--Gf~v~~~~~~ 171 (202)
T 2kw5_A 110 RQQLYPKVYQGLKPGGVFILEGFAPEQLQ---------YNTGGP----KDLDLLPKLETLQSELP--SLNWLIANNL 171 (202)
T ss_dssp HHHHHHHHHTTCCSSEEEEEEEECTTTGG---------GTSCCS----SSGGGCCCHHHHHHHCS--SSCEEEEEEE
T ss_pred HHHHHHHHHHhcCCCcEEEEEEecccccc---------CCCCCC----CcceeecCHHHHHHHhc--CceEEEEEEE
Confidence 78999999999999999999988543310 000000 00123578999999998 9999987654
No 91
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=99.06 E-value=8.3e-10 Score=96.58 Aligned_cols=110 Identities=15% Similarity=0.202 Sum_probs=84.8
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CC--e-----------------EEEccCChh
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PC--M-----------------WILHDWNDE 244 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~g--v-----------------~vLh~~~~~ 244 (333)
..+..+|||+|||+|.++..+++..+ +++++|+ |.+++.++++ .+ + .|+.+...+
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~ 195 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE 195 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH
Confidence 34568999999999999999888765 8999999 8888776542 11 1 334444445
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeecCC
Q 035738 245 HCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAIG 324 (333)
Q Consensus 245 ~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~ 324 (333)
....+++++.+.|+|||++++.+.... +.+++.++++++||+++++...++
T Consensus 196 ~~~~~l~~~~~~LkpgG~lils~~~~~-----------------------------~~~~v~~~l~~~Gf~~~~~~~~~~ 246 (254)
T 2nxc_A 196 LHAALAPRYREALVPGGRALLTGILKD-----------------------------RAPLVREAMAGAGFRPLEEAAEGE 246 (254)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEEEGG-----------------------------GHHHHHHHHHHTTCEEEEEEEETT
T ss_pred HHHHHHHHHHHHcCCCCEEEEEeeccC-----------------------------CHHHHHHHHHHCCCEEEEEeccCC
Confidence 567899999999999999999765321 267889999999999999888776
Q ss_pred ceeE
Q 035738 325 NLWV 328 (333)
Q Consensus 325 ~~~v 328 (333)
+..+
T Consensus 247 W~~l 250 (254)
T 2nxc_A 247 WVLL 250 (254)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 6554
No 92
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=99.05 E-value=2.6e-10 Score=99.59 Aligned_cols=112 Identities=8% Similarity=-0.073 Sum_probs=82.0
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC-----------------------CCCe---------
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP-----------------------HPCM--------- 235 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------~~gv--------- 235 (333)
....+|||||||+|..+..|++. ..+++++|+ +.+++.|++ .+++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 46689999999999999999987 458999999 888876531 0111
Q ss_pred ---------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcC
Q 035738 236 ---------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKER 300 (333)
Q Consensus 236 ---------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~r 300 (333)
.+||.+++++..+++++++++|+|||+++++....+... . .......
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~-~-----------------~g~~~~~ 206 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTK-H-----------------AGPPFYV 206 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTS-C-----------------CCSSCCC
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCcc-C-----------------CCCCCCC
Confidence 356777877778899999999999999987765533210 0 0001125
Q ss_pred CHHHHHHHHHhCCCCeeEEee
Q 035738 301 TRHEFMTLATGAGFSGISCER 321 (333)
Q Consensus 301 t~~e~~~ll~~aGf~~~~~~~ 321 (333)
+.+++.++|++ +|+++.+..
T Consensus 207 ~~~el~~~l~~-~f~v~~~~~ 226 (252)
T 2gb4_A 207 PSAELKRLFGT-KCSMQCLEE 226 (252)
T ss_dssp CHHHHHHHHTT-TEEEEEEEE
T ss_pred CHHHHHHHhhC-CeEEEEEec
Confidence 78999999987 598877654
No 93
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=99.04 E-value=6.9e-11 Score=105.43 Aligned_cols=135 Identities=12% Similarity=0.004 Sum_probs=87.4
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC--------------------C----C-e------
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH--------------------P----C-M------ 235 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------------------~----g-v------ 235 (333)
..+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++. + + .
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 140 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence 456789999999999999998776 5568999999 7777655421 0 0 0
Q ss_pred EEEcc--CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCC--------CCCcc----------ccc-cccchhhHHHhhC
Q 035738 236 WILHD--WNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEV--------PNTSI----------ESK-SNSDSDVLMMIQS 294 (333)
Q Consensus 236 ~vLh~--~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~--------~~~~~----------~~~-~~~~~d~~m~~~~ 294 (333)
.++|+ .+.++..++|++++++|+|||++++..+....- ..... ... ....+.+.+....
T Consensus 141 ~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 220 (298)
T 1ri5_A 141 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSV 220 (298)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSC
T ss_pred chhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhh
Confidence 44565 456667799999999999999999988653210 00000 000 0000000000000
Q ss_pred --CCCCcCCHHHHHHHHHhCCCCeeEEeecC
Q 035738 295 --PGGKERTRHEFMTLATGAGFSGISCERAI 323 (333)
Q Consensus 295 --~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 323 (333)
.....++.++|.++|+++||+++++....
T Consensus 221 ~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~~ 251 (298)
T 1ri5_A 221 NNCIEYFVDFTRMVDGFKRLGLSLVERKGFI 251 (298)
T ss_dssp SSEEEECCCHHHHHHHHHTTTEEEEEEEEHH
T ss_pred cCCcccccCHHHHHHHHHHcCCEEEEecCHH
Confidence 01235689999999999999999987654
No 94
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=99.04 E-value=2.8e-10 Score=98.12 Aligned_cols=131 Identities=17% Similarity=0.145 Sum_probs=79.0
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-C--------Ce--------------
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-P--------CM-------------- 235 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~--------gv-------------- 235 (333)
..++.+.......+|||||||+|.++..+++. ...+++++|+ +.+++.+++. + ++
T Consensus 27 ~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 105 (232)
T 3opn_A 27 KALKEFHLEINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPS 105 (232)
T ss_dssp HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCS
T ss_pred HHHHHcCCCCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCC
Confidence 44444542235679999999999999999987 3348999999 7787664321 1 11
Q ss_pred EEEcc--CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCC-CCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhC
Q 035738 236 WILHD--WNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEV-PNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGA 312 (333)
Q Consensus 236 ~vLh~--~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~-~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~a 312 (333)
.+..+ +.. ...+|++++++|+|||++++.. .+.. .............+-.. ...+.+++.++++++
T Consensus 106 ~~~~D~v~~~--l~~~l~~i~rvLkpgG~lv~~~--~p~~e~~~~~~~~~G~~~d~~~-------~~~~~~~l~~~l~~a 174 (232)
T 3opn_A 106 FTSIDVSFIS--LDLILPPLYEILEKNGEVAALI--KPQFEAGREQVGKNGIIRDPKV-------HQMTIEKVLKTATQL 174 (232)
T ss_dssp EEEECCSSSC--GGGTHHHHHHHSCTTCEEEEEE--CHHHHSCHHHHC-CCCCCCHHH-------HHHHHHHHHHHHHHH
T ss_pred EEEEEEEhhh--HHHHHHHHHHhccCCCEEEEEE--CcccccCHHHhCcCCeecCcch-------hHHHHHHHHHHHHHC
Confidence 00011 111 1479999999999999999853 1110 00000000000001000 112578999999999
Q ss_pred CCCeeEEeec
Q 035738 313 GFSGISCERA 322 (333)
Q Consensus 313 Gf~~~~~~~~ 322 (333)
||++..+...
T Consensus 175 Gf~v~~~~~~ 184 (232)
T 3opn_A 175 GFSVKGLTFS 184 (232)
T ss_dssp TEEEEEEEEC
T ss_pred CCEEEEEEEc
Confidence 9998888654
No 95
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.02 E-value=1.7e-09 Score=94.13 Aligned_cols=86 Identities=13% Similarity=0.232 Sum_probs=63.8
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----CCe-----------------E
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----PCM-----------------W 236 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~gv-----------------~ 236 (333)
.++.... ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++. .++ .
T Consensus 32 ~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~ 108 (252)
T 1wzn_A 32 EIFKEDA-KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDA 108 (252)
T ss_dssp HHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEE
T ss_pred HHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccE
Confidence 3444333 456689999999999999999986 568999999 8888776531 011 1
Q ss_pred ------EEccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738 237 ------ILHDWNDEHCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 237 ------vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
.++.+++++..++|++++++|+|||.+++.-+
T Consensus 109 v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 109 VTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp EEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 23455667778999999999999999886443
No 96
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=99.02 E-value=9.1e-10 Score=93.02 Aligned_cols=116 Identities=12% Similarity=0.086 Sum_probs=73.3
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCCC-----Ce------------------
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPHP-----CM------------------ 235 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-----gv------------------ 235 (333)
.+++.+....+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.++++. ++
T Consensus 20 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 99 (215)
T 4dzr_A 20 EAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERG 99 (215)
T ss_dssp HHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHTT
T ss_pred HHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhcc
Confidence 4444444236778999999999999999999999999999999 88888887541 11
Q ss_pred ----EEEc-----------cCChhHH------------------HHHHHHHHHhCCCCcEEEEEeeecCCCCCCcccccc
Q 035738 236 ----WILH-----------DWNDEHC------------------LKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKS 282 (333)
Q Consensus 236 ----~vLh-----------~~~~~~~------------------~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~ 282 (333)
.|+. .++++.. .++++++++.|+|||++++++...
T Consensus 100 ~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~------------ 167 (215)
T 4dzr_A 100 RPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH------------ 167 (215)
T ss_dssp CCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT------------
T ss_pred CcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC------------
Confidence 2222 1111111 578888889999999966665410
Q ss_pred ccchhhHHHhhCCCCCcCCHHHHHHHHH--hCCCCeeEEeecCC
Q 035738 283 NSDSDVLMMIQSPGGKERTRHEFMTLAT--GAGFSGISCERAIG 324 (333)
Q Consensus 283 ~~~~d~~m~~~~~~g~~rt~~e~~~ll~--~aGf~~~~~~~~~~ 324 (333)
...+++.++++ ++||..+++.....
T Consensus 168 -----------------~~~~~~~~~l~~~~~gf~~~~~~~~~~ 194 (215)
T 4dzr_A 168 -----------------NQADEVARLFAPWRERGFRVRKVKDLR 194 (215)
T ss_dssp -----------------SCHHHHHHHTGGGGGGTEECCEEECTT
T ss_pred -----------------ccHHHHHHHHHHhhcCCceEEEEEecC
Confidence 12567788888 89998888876643
No 97
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=99.02 E-value=7.3e-11 Score=105.19 Aligned_cols=118 Identities=11% Similarity=0.098 Sum_probs=78.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC-------------------------------------
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP------------------------------------- 231 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------------------------- 231 (333)
...+|||||||+|.+ ..++...+..+++++|+ +.+++.+++
T Consensus 71 ~~~~vLDiGcG~G~~-~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVY-QLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCG-GGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChH-HHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 567999999999994 34444445569999999 777753211
Q ss_pred -------------CC--------C-e------EEEccCCh--hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccc
Q 035738 232 -------------HP--------C-M------WILHDWND--EHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESK 281 (333)
Q Consensus 232 -------------~~--------g-v------~vLh~~~~--~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~ 281 (333)
.+ + . .+||+.++ ++..++|++++++|+|||+|++.+..... ..
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~-----~~-- 222 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEES-----WY-- 222 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCC-----EE--
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcc-----eE--
Confidence 11 1 2 55565332 25568999999999999999998754221 00
Q ss_pred cccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeec
Q 035738 282 SNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERA 322 (333)
Q Consensus 282 ~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 322 (333)
...+. ......++.++|.++|+++||+++++...
T Consensus 223 --~~~~~-----~~~~~~~~~~~l~~~l~~aGf~~~~~~~~ 256 (289)
T 2g72_A 223 --LAGEA-----RLTVVPVSEEEVREALVRSGYKVRDLRTY 256 (289)
T ss_dssp --EETTE-----EEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred --EcCCe-----eeeeccCCHHHHHHHHHHcCCeEEEeeEe
Confidence 00000 00123468999999999999999887654
No 98
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=99.01 E-value=5.7e-10 Score=99.85 Aligned_cols=122 Identities=19% Similarity=0.218 Sum_probs=80.3
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCCCC------------------------C------C-
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVPPH------------------------P------C- 234 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------------------------~------g- 234 (333)
..+..+|||||||+|..+..+++.+ +..+++++|+ +.+++.+++. . +
T Consensus 34 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 113 (299)
T 3g5t_A 34 DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQK 113 (299)
T ss_dssp CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSC
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCC
Confidence 3467899999999999999999987 8899999999 7787765321 1 1
Q ss_pred e------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhh-CCCC--CcCCHHHH
Q 035738 235 M------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQ-SPGG--KERTRHEF 305 (333)
Q Consensus 235 v------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~-~~~g--~~rt~~e~ 305 (333)
+ .++|++ +. .++|++++++|+|||.+++.+...+.....+ .....+.-..... ..+. .....+.+
T Consensus 114 fD~V~~~~~l~~~-~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~w~~p~~~~~ 187 (299)
T 3g5t_A 114 IDMITAVECAHWF-DF--EKFQRSAYANLRKDGTIAIWGYADPIFPDYP---EFDDLMIEVPYGKQGLGPYWEQPGRSRL 187 (299)
T ss_dssp EEEEEEESCGGGS-CH--HHHHHHHHHHEEEEEEEEEEEEEEEECTTCG---GGTTHHHHHHHCTTTTGGGSCTTHHHHH
T ss_pred eeEEeHhhHHHHh-CH--HHHHHHHHHhcCCCcEEEEEecCCccccCcH---HHHHHHHHhccCcccccchhhchhhHHH
Confidence 1 556777 33 4899999999999999999665433211111 1111111111100 0011 11346678
Q ss_pred HHHHHhCCCC
Q 035738 306 MTLATGAGFS 315 (333)
Q Consensus 306 ~~ll~~aGf~ 315 (333)
.++++++||.
T Consensus 188 ~~~l~~~gfp 197 (299)
T 3g5t_A 188 RNMLKDSHLD 197 (299)
T ss_dssp HTTTTTCCCC
T ss_pred HHhhhccCCC
Confidence 9999999994
No 99
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=99.00 E-value=4.4e-10 Score=98.12 Aligned_cols=112 Identities=10% Similarity=0.076 Sum_probs=86.5
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hhHhhhCCCC------CC-e--------------
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTK-YPYIKGINFDL-PHVIEHVPPH------PC-M-------------- 235 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~------~g-v-------------- 235 (333)
..++..++ ..+..+|||+|||+|.++..+++. .|..+++++|+ +.+++.++++ ++ +
T Consensus 83 ~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (255)
T 3mb5_A 83 ALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEE 161 (255)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCC
T ss_pred HHHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCC
Confidence 34555555 677889999999999999999999 88999999999 7888777542 12 2
Q ss_pred ---EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhC
Q 035738 236 ---WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGA 312 (333)
Q Consensus 236 ---~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~a 312 (333)
.|+.+.++.. .+|+++.++|+|||++++..+... ..+++.+++++.
T Consensus 162 ~~D~v~~~~~~~~--~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~~~l~~~ 210 (255)
T 3mb5_A 162 NVDHVILDLPQPE--RVVEHAAKALKPGGFFVAYTPCSN-----------------------------QVMRLHEKLREF 210 (255)
T ss_dssp SEEEEEECSSCGG--GGHHHHHHHEEEEEEEEEEESSHH-----------------------------HHHHHHHHHHHT
T ss_pred CcCEEEECCCCHH--HHHHHHHHHcCCCCEEEEEECCHH-----------------------------HHHHHHHHHHHc
Confidence 5566666654 799999999999999999764211 145678888999
Q ss_pred C--CCeeEEeec
Q 035738 313 G--FSGISCERA 322 (333)
Q Consensus 313 G--f~~~~~~~~ 322 (333)
| |..+++...
T Consensus 211 g~~f~~~~~~e~ 222 (255)
T 3mb5_A 211 KDYFMKPRTINV 222 (255)
T ss_dssp GGGBSCCEEECC
T ss_pred CCCccccEEEEE
Confidence 9 988877644
No 100
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=98.99 E-value=2.5e-10 Score=99.97 Aligned_cols=121 Identities=12% Similarity=-0.033 Sum_probs=83.1
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC-----------------------------------
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP----------------------------------- 231 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------------------------- 231 (333)
..+..+|||||||+|.++..+++..+ .+++++|+ +.+++.+++
T Consensus 54 ~~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 54 AVKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp SCCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred ccCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 34668999999999999998888766 57999999 777665411
Q ss_pred ------C------------C---C-e------EEEccCC--hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccc
Q 035738 232 ------H------------P---C-M------WILHDWN--DEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESK 281 (333)
Q Consensus 232 ------~------------~---g-v------~vLh~~~--~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~ 281 (333)
. + + . .+||..+ .++..++|++++++|+|||++++.+....+ ..
T Consensus 133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~-----~~-- 205 (265)
T 2i62_A 133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSS-----YY-- 205 (265)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC-----EE--
T ss_pred hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCc-----eE--
Confidence 0 1 1 1 4445322 225568999999999999999999854321 00
Q ss_pred cccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeecC
Q 035738 282 SNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERAI 323 (333)
Q Consensus 282 ~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 323 (333)
...+.. ......+.++|.++|+++||+++++....
T Consensus 206 --~~~~~~-----~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 240 (265)
T 2i62_A 206 --MIGEQK-----FSSLPLGWETVRDAVEEAGYTIEQFEVIS 240 (265)
T ss_dssp --EETTEE-----EECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred --EcCCcc-----ccccccCHHHHHHHHHHCCCEEEEEEEec
Confidence 000000 01234578999999999999999887653
No 101
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=98.99 E-value=5.5e-10 Score=99.22 Aligned_cols=120 Identities=13% Similarity=0.123 Sum_probs=86.6
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---C--Ce------------------
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---P--CM------------------ 235 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~--gv------------------ 235 (333)
.+++.++ .....+|||||||+|.++..+++. ..+++++|+ +.+++.+++. . ++
T Consensus 111 ~~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 187 (286)
T 3m70_A 111 DVVDAAK-IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDF 187 (286)
T ss_dssp HHHHHHH-HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEE
T ss_pred HHHHHhh-ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccE
Confidence 3444444 346789999999999999999988 458999999 7888766532 0 11
Q ss_pred ----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHh
Q 035738 236 ----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATG 311 (333)
Q Consensus 236 ----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~ 311 (333)
.++|+++++....+|+++++.|+|||.++++.....+....+ ......++.+++.++++.
T Consensus 188 i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~ 251 (286)
T 3m70_A 188 IVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCP----------------LPFSFTFAENELKEYYKD 251 (286)
T ss_dssp EEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCS----------------SCCSCCBCTTHHHHHTTT
T ss_pred EEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCC----------------CCccccCCHHHHHHHhcC
Confidence 677888888888999999999999999888777554321110 011234567889999855
Q ss_pred CCCCeeEEe
Q 035738 312 AGFSGISCE 320 (333)
Q Consensus 312 aGf~~~~~~ 320 (333)
|++++..
T Consensus 252 --~~~~~~~ 258 (286)
T 3m70_A 252 --WEFLEYN 258 (286)
T ss_dssp --SEEEEEE
T ss_pred --CEEEEEE
Confidence 8877764
No 102
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=98.98 E-value=2.7e-09 Score=94.54 Aligned_cols=133 Identities=14% Similarity=0.092 Sum_probs=80.5
Q ss_pred HHHhhccCCC-CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhC-CCCCC---------------------e
Q 035738 180 NILESYKGFD-NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHV-PPHPC---------------------M 235 (333)
Q Consensus 180 ~~~~~~~~~~-~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-~~~~g---------------------v 235 (333)
.+++.+. .+ ...+|||||||||.++..+++. +..+++++|+ +.+++.+ ++.+. +
T Consensus 75 ~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~f 152 (291)
T 3hp7_A 75 KALAVFN-LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLP 152 (291)
T ss_dssp HHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCC
T ss_pred HHHHhcC-CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCC
Confidence 4455554 43 5679999999999999988886 5568999999 7777652 21111 1
Q ss_pred -EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCC-CCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCC
Q 035738 236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEV-PNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAG 313 (333)
Q Consensus 236 -~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~-~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aG 313 (333)
.+..+.+-.....+|++++++|+|||+++++- .|.- .............|-. ...+..+++.++++++|
T Consensus 153 D~v~~d~sf~sl~~vL~e~~rvLkpGG~lv~lv--kPqfe~~~~~~~~~G~vrd~~-------~~~~~~~~v~~~~~~~G 223 (291)
T 3hp7_A 153 SFASIDVSFISLNLILPALAKILVDGGQVVALV--KPQFEAGREQIGKNGIVRESS-------IHEKVLETVTAFAVDYG 223 (291)
T ss_dssp SEEEECCSSSCGGGTHHHHHHHSCTTCEEEEEE--CGGGTSCGGGCC-CCCCCCHH-------HHHHHHHHHHHHHHHTT
T ss_pred CEEEEEeeHhhHHHHHHHHHHHcCcCCEEEEEE--CcccccChhhcCCCCccCCHH-------HHHHHHHHHHHHHHHCC
Confidence 12222211112479999999999999999872 1210 0000000000000000 01225788999999999
Q ss_pred CCeeEEeecC
Q 035738 314 FSGISCERAI 323 (333)
Q Consensus 314 f~~~~~~~~~ 323 (333)
|++..+...+
T Consensus 224 f~v~~~~~sp 233 (291)
T 3hp7_A 224 FSVKGLDFSP 233 (291)
T ss_dssp EEEEEEEECS
T ss_pred CEEEEEEECC
Confidence 9988877643
No 103
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=98.96 E-value=1.1e-10 Score=99.27 Aligned_cols=80 Identities=13% Similarity=0.175 Sum_probs=64.3
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----CCe----------------------EEEcc
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----PCM----------------------WILHD 240 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~gv----------------------~vLh~ 240 (333)
..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. +++ .++|+
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY 126 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence 5567899999999999999999886 47999999 7887766432 111 66778
Q ss_pred CCh-hHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738 241 WND-EHCLKLLKNCYKSIPEDGKVIAVELM 269 (333)
Q Consensus 241 ~~~-~~~~~lL~~~~~~L~pgG~l~i~e~~ 269 (333)
+++ +...++|+++++.|+|||++++..+.
T Consensus 127 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 876 45568999999999999999998773
No 104
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=98.95 E-value=2.8e-09 Score=88.41 Aligned_cols=121 Identities=15% Similarity=0.210 Sum_probs=87.1
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CC--e---------------
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PC--M--------------- 235 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~g--v--------------- 235 (333)
.+++.+. ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.++++ .+ +
T Consensus 43 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 119 (194)
T 1dus_A 43 ILVENVV-VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRK 119 (194)
T ss_dssp HHHHHCC-CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSC
T ss_pred HHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccCC
Confidence 4455555 557789999999999999999988 678999999 7777665432 11 2
Q ss_pred --EEEcc----CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHH
Q 035738 236 --WILHD----WNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLA 309 (333)
Q Consensus 236 --~vLh~----~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll 309 (333)
.|+.+ +..+....+++++.+.|+|||++++....... ..++.+++
T Consensus 120 ~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~-----------------------------~~~~~~~l 170 (194)
T 1dus_A 120 YNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQG-----------------------------AKSLAKYM 170 (194)
T ss_dssp EEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTHH-----------------------------HHHHHHHH
T ss_pred ceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCCCC-----------------------------hHHHHHHH
Confidence 22222 12455678999999999999999999873210 23567777
Q ss_pred HhCCCCeeEEeecCCceeEEEEeC
Q 035738 310 TGAGFSGISCERAIGNLWVMEFYK 333 (333)
Q Consensus 310 ~~aGf~~~~~~~~~~~~~vie~~~ 333 (333)
++. |..+++.....++.++.+.|
T Consensus 171 ~~~-~~~~~~~~~~~~~~~~~~~k 193 (194)
T 1dus_A 171 KDV-FGNVETVTIKGGYRVLKSKK 193 (194)
T ss_dssp HHH-HSCCEEEEEETTEEEEEEEC
T ss_pred HHH-hcceEEEecCCcEEEEEEee
Confidence 777 67778877777777777665
No 105
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=98.94 E-value=3.9e-10 Score=99.80 Aligned_cols=110 Identities=8% Similarity=0.007 Sum_probs=79.6
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hhHhhhCCCC-------CCe---------------
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTK-YPYIKGINFDL-PHVIEHVPPH-------PCM--------------- 235 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~gv--------------- 235 (333)
.++..++ ..+..+|||+|||+|..+..+++. +|..+++++|+ +.+++.++++ .++
T Consensus 101 ~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~ 179 (275)
T 1yb2_A 101 YIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM 179 (275)
T ss_dssp -----CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred HHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCC
Confidence 4445454 667889999999999999999998 78899999999 7777655321 111
Q ss_pred --EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCC
Q 035738 236 --WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAG 313 (333)
Q Consensus 236 --~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aG 313 (333)
.|+.++++.. ++|+++.+.|+|||++++..+... ..+++.++++++|
T Consensus 180 fD~Vi~~~~~~~--~~l~~~~~~LkpgG~l~i~~~~~~-----------------------------~~~~~~~~l~~~G 228 (275)
T 1yb2_A 180 YDAVIADIPDPW--NHVQKIASMMKPGSVATFYLPNFD-----------------------------QSEKTVLSLSASG 228 (275)
T ss_dssp EEEEEECCSCGG--GSHHHHHHTEEEEEEEEEEESSHH-----------------------------HHHHHHHHSGGGT
T ss_pred ccEEEEcCcCHH--HHHHHHHHHcCCCCEEEEEeCCHH-----------------------------HHHHHHHHHHHCC
Confidence 4445566554 899999999999999999875210 1346677778889
Q ss_pred CCeeEEee
Q 035738 314 FSGISCER 321 (333)
Q Consensus 314 f~~~~~~~ 321 (333)
|+.+++..
T Consensus 229 f~~~~~~~ 236 (275)
T 1yb2_A 229 MHHLETVE 236 (275)
T ss_dssp EEEEEEEE
T ss_pred CeEEEEEE
Confidence 88877765
No 106
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=98.94 E-value=5.1e-09 Score=88.85 Aligned_cols=80 Identities=15% Similarity=0.133 Sum_probs=58.6
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHh----hhCCCCCC--------------------e-EEEccC
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVI----EHVPPHPC--------------------M-WILHDW 241 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~----~~a~~~~g--------------------v-~vLh~~ 241 (333)
..+..+|||||||+|..+..+++..++.+++++|+ +.++ +.+++..+ . .|+.+.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~ 134 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI 134 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEec
Confidence 55678999999999999999999988779999999 6543 33321111 1 334444
Q ss_pred Chh-HHHHHHHHHHHhCCCCcEEEEEe
Q 035738 242 NDE-HCLKLLKNCYKSIPEDGKVIAVE 267 (333)
Q Consensus 242 ~~~-~~~~lL~~~~~~L~pgG~l~i~e 267 (333)
.++ +...+|+++++.|||||++++.-
T Consensus 135 ~~~~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 135 AQKNQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp CSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 333 33456999999999999999984
No 107
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=98.93 E-value=7.5e-09 Score=88.62 Aligned_cols=124 Identities=14% Similarity=0.052 Sum_probs=81.3
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhC----CCCCCe---------------------EEEcc
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHV----PPHPCM---------------------WILHD 240 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a----~~~~gv---------------------~vLh~ 240 (333)
..+..+|||+|||+|.++..+++.. |..+++++|. +.+++.+ +..+++ .|+++
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 5567899999999999999999885 6689999999 7554433 222111 45555
Q ss_pred CChhHH-HHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEE
Q 035738 241 WNDEHC-LKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISC 319 (333)
Q Consensus 241 ~~~~~~-~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~ 319 (333)
.+.++. ..+++++++.|+|||++++. ......... .... ....+++.++ +++ |+.++.
T Consensus 151 ~~~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~---------~~~~---------~~~~~~l~~l-~~~-f~~~~~ 209 (227)
T 1g8a_A 151 VAQPTQAKILIDNAEVYLKRGGYGMIA-VKSRSIDVT---------KEPE---------QVFREVEREL-SEY-FEVIER 209 (227)
T ss_dssp CCSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCTT---------SCHH---------HHHHHHHHHH-HTT-SEEEEE
T ss_pred CCCHhHHHHHHHHHHHhcCCCCEEEEE-EecCCCCCC---------CChh---------hhhHHHHHHH-Hhh-ceeeeE
Confidence 543333 34599999999999999998 322111000 0000 1125677777 777 999998
Q ss_pred eecCCc---eeEEEEe
Q 035738 320 ERAIGN---LWVMEFY 332 (333)
Q Consensus 320 ~~~~~~---~~vie~~ 332 (333)
.....+ +..+.++
T Consensus 210 ~~~~~~~~~~~~~~~~ 225 (227)
T 1g8a_A 210 LNLEPYEKDHALFVVR 225 (227)
T ss_dssp EECTTTSSSEEEEEEE
T ss_pred eccCcccCCCEEEEEE
Confidence 877544 5555444
No 108
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=98.93 E-value=8.7e-09 Score=84.31 Aligned_cols=101 Identities=12% Similarity=0.158 Sum_probs=73.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----CC---------e-EE-----EccCChh-----
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----PC---------M-WI-----LHDWNDE----- 244 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~g---------v-~v-----Lh~~~~~----- 244 (333)
+..+|||||||+|.++..+++.. +++++|+ +.+++..... .+ . .| +|..++.
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~~~~~ 99 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALESHRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDPIIGG 99 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHTCSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCTTTBC
T ss_pred CCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhcccCCeEEECChhhhcccCCCCEEEECCCCccCCccccccC
Confidence 45699999999999999999987 8999999 7888762211 00 0 22 2222222
Q ss_pred --HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeec
Q 035738 245 --HCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERA 322 (333)
Q Consensus 245 --~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 322 (333)
+...+++++.+.+ |||++++.+... .+.+++.++++++||+.+++...
T Consensus 100 ~~~~~~~~~~~~~~l-pgG~l~~~~~~~-----------------------------~~~~~l~~~l~~~gf~~~~~~~~ 149 (170)
T 3q87_B 100 GYLGREVIDRFVDAV-TVGMLYLLVIEA-----------------------------NRPKEVLARLEERGYGTRILKVR 149 (170)
T ss_dssp CGGGCHHHHHHHHHC-CSSEEEEEEEGG-----------------------------GCHHHHHHHHHHTTCEEEEEEEE
T ss_pred CcchHHHHHHHHhhC-CCCEEEEEEecC-----------------------------CCHHHHHHHHHHCCCcEEEEEee
Confidence 3357889999999 999999988521 13678899999999999888765
Q ss_pred C
Q 035738 323 I 323 (333)
Q Consensus 323 ~ 323 (333)
.
T Consensus 150 ~ 150 (170)
T 3q87_B 150 K 150 (170)
T ss_dssp E
T ss_pred c
Confidence 4
No 109
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=98.92 E-value=2.5e-09 Score=90.81 Aligned_cols=78 Identities=21% Similarity=0.375 Sum_probs=60.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe--------------------EEEccCC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM--------------------WILHDWN 242 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv--------------------~vLh~~~ 242 (333)
...+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++ .++ .|+.+++
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 457899999999999999999999999999999 7887766531 111 3333444
Q ss_pred hh-----------HHHHHHHHHHHhCCCCcEEEEEe
Q 035738 243 DE-----------HCLKLLKNCYKSIPEDGKVIAVE 267 (333)
Q Consensus 243 ~~-----------~~~~lL~~~~~~L~pgG~l~i~e 267 (333)
++ ....+|+++.++|+|||.+++..
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 32 11479999999999999988854
No 110
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=98.91 E-value=1e-09 Score=94.59 Aligned_cols=116 Identities=9% Similarity=0.060 Sum_probs=75.7
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhH----hhhCCCCCCe---------------------EEEcc
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHV----IEHVPPHPCM---------------------WILHD 240 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~----~~~a~~~~gv---------------------~vLh~ 240 (333)
+....+|||+|||+|.++..+++.+ |..+++++|+ +.+ ++.++.++++ .|+.+
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 5677899999999999999999986 7789999999 553 3333221111 34444
Q ss_pred CC-hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEE
Q 035738 241 WN-DEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISC 319 (333)
Q Consensus 241 ~~-~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~ 319 (333)
.+ .+....+++++.+.|+|||++++. ......... . ..... -..+ .++|+++||+++++
T Consensus 155 ~~~~~~~~~~~~~~~~~LkpgG~l~i~-~~~~~~~~~-------~--~~~~~---------~~~~-~~~l~~~Gf~~~~~ 214 (233)
T 2ipx_A 155 VAQPDQTRIVALNAHTFLRNGGHFVIS-IKANCIDST-------A--SAEAV---------FASE-VKKMQQENMKPQEQ 214 (233)
T ss_dssp CCCTTHHHHHHHHHHHHEEEEEEEEEE-EEHHHHCSS-------S--CHHHH---------HHHH-HHTTGGGTEEEEEE
T ss_pred CCCccHHHHHHHHHHHHcCCCeEEEEE-EcccccccC-------C--CHHHH---------HHHH-HHHHHHCCCceEEE
Confidence 43 334456799999999999999993 321100000 0 00000 0123 58899999999997
Q ss_pred eecC
Q 035738 320 ERAI 323 (333)
Q Consensus 320 ~~~~ 323 (333)
....
T Consensus 215 ~~~~ 218 (233)
T 2ipx_A 215 LTLE 218 (233)
T ss_dssp EECT
T ss_pred EecC
Confidence 7664
No 111
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=98.91 E-value=1.3e-08 Score=90.02 Aligned_cols=121 Identities=14% Similarity=0.150 Sum_probs=85.8
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe-----------------
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM----------------- 235 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv----------------- 235 (333)
.+++.++ .+..+|||||||+|..+..+++.+|+.+++++|+ +.+++.++++ +++
T Consensus 101 ~~l~~~~--~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD 178 (276)
T 2b3t_A 101 QALARLP--EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFA 178 (276)
T ss_dssp HHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEE
T ss_pred HHHHhcc--cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCcc
Confidence 4444432 3567999999999999999999999999999999 7888766542 112
Q ss_pred EEEcc------------------CCh----------hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchh
Q 035738 236 WILHD------------------WND----------EHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSD 287 (333)
Q Consensus 236 ~vLh~------------------~~~----------~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d 287 (333)
.|+.+ .+. ....++++++.+.|+|||++++...
T Consensus 179 ~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~------------------- 239 (276)
T 2b3t_A 179 MIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG------------------- 239 (276)
T ss_dssp EEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC-------------------
T ss_pred EEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC-------------------
Confidence 22222 110 2346899999999999999887521
Q ss_pred hHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeec-CCceeEEEEe
Q 035738 288 VLMMIQSPGGKERTRHEFMTLATGAGFSGISCERA-IGNLWVMEFY 332 (333)
Q Consensus 288 ~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~-~~~~~vie~~ 332 (333)
..+.+++.++++++||+.+++..- .+..-++.++
T Consensus 240 -----------~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~ 274 (276)
T 2b3t_A 240 -----------WQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGR 274 (276)
T ss_dssp -----------SSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEE
T ss_pred -----------chHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEE
Confidence 113678999999999998888764 3444455444
No 112
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=98.90 E-value=6.9e-09 Score=89.14 Aligned_cols=116 Identities=15% Similarity=0.125 Sum_probs=75.5
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hhHh----hhCCCCCC--------------------e-EEEcc
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTK-YPYIKGINFDL-PHVI----EHVPPHPC--------------------M-WILHD 240 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~----~~a~~~~g--------------------v-~vLh~ 240 (333)
+.+..+|||+|||+|.++..+++. .|+.+++++|+ +.++ +.+++.++ + .|+.+
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence 667899999999999999999886 56889999999 7653 22321111 1 66677
Q ss_pred CChhHHHHHH-HHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEE
Q 035738 241 WNDEHCLKLL-KNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISC 319 (333)
Q Consensus 241 ~~~~~~~~lL-~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~ 319 (333)
.+.++..++| +.+.+.|+|||++++....... |.. .+-.+ ..++..+.|+++||++.++
T Consensus 154 ~a~~~~~~il~~~~~~~LkpGG~lvisik~~~~--------------d~t-----~~~~e-~~~~~~~~L~~~gf~~~~~ 213 (232)
T 3id6_C 154 IAQPDQTDIAIYNAKFFLKVNGDMLLVIKARSI--------------DVT-----KDPKE-IYKTEVEKLENSNFETIQI 213 (232)
T ss_dssp CCCTTHHHHHHHHHHHHEEEEEEEEEEEC--------------------------CCSSS-STTHHHHHHHHTTEEEEEE
T ss_pred CCChhHHHHHHHHHHHhCCCCeEEEEEEccCCc--------------ccC-----CCHHH-HHHHHHHHHHHCCCEEEEE
Confidence 6654444554 5566699999999998432111 100 01111 1234456778899999998
Q ss_pred eecC
Q 035738 320 ERAI 323 (333)
Q Consensus 320 ~~~~ 323 (333)
....
T Consensus 214 ~~l~ 217 (232)
T 3id6_C 214 INLD 217 (232)
T ss_dssp EECT
T ss_pred eccC
Confidence 8774
No 113
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=98.89 E-value=5.2e-10 Score=96.60 Aligned_cols=80 Identities=10% Similarity=0.164 Sum_probs=59.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----CCe--------------------EE-----
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----PCM--------------------WI----- 237 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~gv--------------------~v----- 237 (333)
....+|||||||+|.++..+++..+ .+++++|+ +.+++.+++. .++ .|
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 4567999999999999999966444 38999999 8888776542 111 22
Q ss_pred ---EccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738 238 ---LHDWNDEHCLKLLKNCYKSIPEDGKVIAVELM 269 (333)
Q Consensus 238 ---Lh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~ 269 (333)
.+++.......+|++++++|||||++++++..
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 22333334457899999999999999998764
No 114
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=98.88 E-value=2.6e-09 Score=90.31 Aligned_cols=112 Identities=13% Similarity=0.081 Sum_probs=75.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCC-eEEEeec-hhHhhhCCCC--------------C---C---e----EEEccCCh
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYI-KGINFDL-PHVIEHVPPH--------------P---C---M----WILHDWND 243 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~--------------~---g---v----~vLh~~~~ 243 (333)
+..+|||||||+|.++..+ .. +++++|+ +.+++.+++. + + + .++|++++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 110 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVED 110 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSC
T ss_pred CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcCC
Confidence 6789999999999999887 45 8999999 7777765431 0 0 1 56677775
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhH-HHh--hCCCCCcCCHHHHHHHHHhCCCCeeEEe
Q 035738 244 EHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVL-MMI--QSPGGKERTRHEFMTLATGAGFSGISCE 320 (333)
Q Consensus 244 ~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~-m~~--~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 320 (333)
.. ++|++++++|+|||++++.++..... +. ...... ... .......++.++++++|+ | .+++.
T Consensus 111 ~~--~~l~~~~~~L~pgG~l~i~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G--~~~~~ 176 (211)
T 2gs9_A 111 VE--RVLLEARRVLRPGGALVVGVLEALSP----WA----ALYRRLGEKGVLPWAQARFLAREDLKALLG--P--PEAEG 176 (211)
T ss_dssp HH--HHHHHHHHHEEEEEEEEEEEECTTSH----HH----HHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S--CSEEE
T ss_pred HH--HHHHHHHHHcCCCCEEEEEecCCcCc----HH----HHHHHHhhccCccccccccCCHHHHHHHhc--C--cceeE
Confidence 54 89999999999999999998743221 00 000000 000 001234579999999998 7 44443
No 115
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=98.87 E-value=6.4e-09 Score=95.70 Aligned_cols=96 Identities=14% Similarity=0.251 Sum_probs=71.6
Q ss_pred HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC---------------CCCe------
Q 035738 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP---------------HPCM------ 235 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~gv------ 235 (333)
...+++.+. .....+|||||||+|..+..++..++..+++++|+ +.+++.|++ ...+
T Consensus 162 i~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD 240 (438)
T 3uwp_A 162 VAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 240 (438)
T ss_dssp HHHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence 345666665 77889999999999999999999888777999999 666655532 0111
Q ss_pred --------------EEEc---cCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCC
Q 035738 236 --------------WILH---DWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPN 275 (333)
Q Consensus 236 --------------~vLh---~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~ 275 (333)
.|+. .+ .++..+.|+++++.|+|||+|++.|.+.+++..
T Consensus 241 ~~~lp~~d~~~~aDVVf~Nn~~F-~pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d~~ 296 (438)
T 3uwp_A 241 FLSEEWRERIANTSVIFVNNFAF-GPEVDHQLKERFANMKEGGRIVSSKPFAPLNFR 296 (438)
T ss_dssp TTSHHHHHHHHTCSEEEECCTTC-CHHHHHHHHHHHTTSCTTCEEEESSCSSCTTCC
T ss_pred ccCCccccccCCccEEEEccccc-CchHHHHHHHHHHcCCCCcEEEEeecccCCCCC
Confidence 2221 12 244567889999999999999999999887643
No 116
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=98.87 E-value=3.2e-09 Score=92.83 Aligned_cols=87 Identities=9% Similarity=0.091 Sum_probs=69.2
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC--------------C----------
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH--------------P---------- 233 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------------~---------- 233 (333)
..+++.++ ..+..+|||||||+|.++..++++. .+++++|+ +.+++.++++ .
T Consensus 35 ~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~g--~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~f 111 (261)
T 3iv6_A 35 ENDIFLEN-IVPGSTVAVIGASTRFLIEKALERG--ASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHF 111 (261)
T ss_dssp HHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCC
T ss_pred HHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCc
Confidence 45555555 6778899999999999999999874 58999999 8888766431 1
Q ss_pred Ce----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738 234 CM----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELM 269 (333)
Q Consensus 234 gv----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~ 269 (333)
++ .++|+++.++...+|++++++| |||++++....
T Consensus 112 D~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~ 150 (261)
T 3iv6_A 112 DFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKL 150 (261)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred cEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence 01 5678888888889999999999 99999987653
No 117
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=98.86 E-value=4.7e-09 Score=86.05 Aligned_cols=86 Identities=16% Similarity=0.269 Sum_probs=63.7
Q ss_pred HHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------C-Ce-----------------
Q 035738 181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------P-CM----------------- 235 (333)
Q Consensus 181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-gv----------------- 235 (333)
++..+. ..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.++++ + ++
T Consensus 17 ~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 95 (178)
T 3hm2_A 17 AISALA-PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNP 95 (178)
T ss_dssp HHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCC
T ss_pred HHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCC
Confidence 444444 66778999999999999999999999999999999 7788776532 1 22
Q ss_pred -EEEccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738 236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 236 -~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
.|+....-.. ..+++++.+.|+|||++++.+.
T Consensus 96 D~i~~~~~~~~-~~~l~~~~~~L~~gG~l~~~~~ 128 (178)
T 3hm2_A 96 DVIFIGGGLTA-PGVFAAAWKRLPVGGRLVANAV 128 (178)
T ss_dssp SEEEECC-TTC-TTHHHHHHHTCCTTCEEEEEEC
T ss_pred CEEEECCcccH-HHHHHHHHHhcCCCCEEEEEee
Confidence 1111111111 4699999999999999998775
No 118
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=98.86 E-value=6.9e-09 Score=90.31 Aligned_cols=84 Identities=11% Similarity=0.130 Sum_probs=66.5
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC------C-Ce---------------------EE
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH------P-CM---------------------WI 237 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~-gv---------------------~v 237 (333)
..+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.++++ . ++ .|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 44678999999999999999999998 899999999 8888776542 1 12 44
Q ss_pred EccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 035738 238 LHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLP 271 (333)
Q Consensus 238 Lh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~ 271 (333)
+.+.+......+|+++.+.|+|||+|++.+....
T Consensus 141 ~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~~~~~ 174 (248)
T 3tfw_A 141 FIDADKPNNPHYLRWALRYSRPGTLIIGDNVVRD 174 (248)
T ss_dssp EECSCGGGHHHHHHHHHHTCCTTCEEEEECCSGG
T ss_pred EECCchHHHHHHHHHHHHhcCCCeEEEEeCCCcC
Confidence 4455555667899999999999999888766443
No 119
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=98.86 E-value=1e-08 Score=86.55 Aligned_cols=106 Identities=15% Similarity=0.164 Sum_probs=76.9
Q ss_pred HHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------C-Ce-----------------
Q 035738 181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------P-CM----------------- 235 (333)
Q Consensus 181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-gv----------------- 235 (333)
++..+. .....+|||||||+|.++..+++. ..+++++|+ +.+++.++++ + ++
T Consensus 47 ~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~ 123 (204)
T 3njr_A 47 TLAALA-PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLP 123 (204)
T ss_dssp HHHHHC-CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCC
T ss_pred HHHhcC-CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCC
Confidence 344444 667789999999999999999988 778999999 8888776542 2 22
Q ss_pred -EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCC
Q 035738 236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGF 314 (333)
Q Consensus 236 -~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf 314 (333)
.++.....+ .. +++++.+.|+|||++++...... +.+++.+++++.||
T Consensus 124 D~v~~~~~~~-~~-~l~~~~~~LkpgG~lv~~~~~~~-----------------------------~~~~~~~~l~~~g~ 172 (204)
T 3njr_A 124 EAVFIGGGGS-QA-LYDRLWEWLAPGTRIVANAVTLE-----------------------------SETLLTQLHARHGG 172 (204)
T ss_dssp SEEEECSCCC-HH-HHHHHHHHSCTTCEEEEEECSHH-----------------------------HHHHHHHHHHHHCS
T ss_pred CEEEECCccc-HH-HHHHHHHhcCCCcEEEEEecCcc-----------------------------cHHHHHHHHHhCCC
Confidence 333222222 23 99999999999999988665211 25577888899998
Q ss_pred CeeEEe
Q 035738 315 SGISCE 320 (333)
Q Consensus 315 ~~~~~~ 320 (333)
++.++.
T Consensus 173 ~i~~i~ 178 (204)
T 3njr_A 173 QLLRID 178 (204)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 877654
No 120
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=98.86 E-value=8.7e-09 Score=87.90 Aligned_cols=84 Identities=7% Similarity=0.081 Sum_probs=65.6
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC------CC-e-----------------------
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH------PC-M----------------------- 235 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~g-v----------------------- 235 (333)
..+..+|||||||+|..+..+++++| +.+++++|+ +.+++.++++ .+ +
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 34678999999999999999999998 789999999 8888776532 11 2
Q ss_pred EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 035738 236 WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLP 271 (333)
Q Consensus 236 ~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~ 271 (333)
.|+.+.+.+....+++++.+.|+|||.+++.+...+
T Consensus 136 ~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 171 (223)
T 3duw_A 136 FIFIDADKQNNPAYFEWALKLSRPGTVIIGDNVVRE 171 (223)
T ss_dssp EEEECSCGGGHHHHHHHHHHTCCTTCEEEEESCSGG
T ss_pred EEEEcCCcHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 444444555667899999999999998887766543
No 121
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=98.86 E-value=2.6e-09 Score=88.41 Aligned_cols=113 Identities=12% Similarity=0.094 Sum_probs=74.6
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe-------------------EE---E
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM-------------------WI---L 238 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv-------------------~v---L 238 (333)
..+..+|||||||+|.++..++++ ..+++++|+ +.+++.++++ .++ .| +
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence 456789999999999999999987 788999999 8888877542 111 11 2
Q ss_pred ccCC---------hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHH
Q 035738 239 HDWN---------DEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLA 309 (333)
Q Consensus 239 h~~~---------~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll 309 (333)
+.++ .+...++|+++.+.|+|||++++........... ......+|.+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~---------------------~~~~~~~~~~~l 156 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDM---------------------EKDAVLEYVIGL 156 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CH---------------------HHHHHHHHHHHS
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHH---------------------HHHHHHHHHHhC
Confidence 2222 2455688999999999999999987632221000 001134555666
Q ss_pred HhCCCCeeEEeecC
Q 035738 310 TGAGFSGISCERAI 323 (333)
Q Consensus 310 ~~aGf~~~~~~~~~ 323 (333)
...+|.+.+.....
T Consensus 157 ~~~~~~~~~~~~~~ 170 (185)
T 3mti_A 157 DQRVFTAMLYQPLN 170 (185)
T ss_dssp CTTTEEEEEEEESS
T ss_pred CCceEEEEEehhhc
Confidence 66778877776553
No 122
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=98.86 E-value=1.8e-09 Score=96.87 Aligned_cols=132 Identities=13% Similarity=0.108 Sum_probs=81.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----------------------------------C
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----------------------------------P 233 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------------------------------~ 233 (333)
...+|||||||+|..+..++.. ...+++++|+ +.+++.|++. +
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 4679999999999877766653 3468999999 7888766421 0
Q ss_pred -C----e---EEEcc-CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCC----------c-c-ccccccc----hhh
Q 035738 234 -C----M---WILHD-WNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNT----------S-I-ESKSNSD----SDV 288 (333)
Q Consensus 234 -g----v---~vLh~-~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~----------~-~-~~~~~~~----~d~ 288 (333)
+ | .++|+ +++++..++|++++++|+|||++++..+....-... . . .+.+... .+.
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 206 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDR 206 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETTE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeeccccccc
Confidence 1 1 45565 344455799999999999999999887732210000 0 0 0000000 000
Q ss_pred --HHHhh--CCCC--CcCCHHHHHHHHHhCCCCeeEEeec
Q 035738 289 --LMMIQ--SPGG--KERTRHEFMTLATGAGFSGISCERA 322 (333)
Q Consensus 289 --~m~~~--~~~g--~~rt~~e~~~ll~~aGf~~~~~~~~ 322 (333)
.+... +..- ...+.+++.++++++||+++.....
T Consensus 207 ~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f 246 (302)
T 2vdw_A 207 IVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDF 246 (302)
T ss_dssp EEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEH
T ss_pred cceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecCh
Confidence 00000 0010 2457899999999999999888654
No 123
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=98.85 E-value=3.9e-09 Score=92.05 Aligned_cols=111 Identities=13% Similarity=0.096 Sum_probs=82.6
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hhHhhhCCCC-------CCe--------------
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTK-YPYIKGINFDL-PHVIEHVPPH-------PCM-------------- 235 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~gv-------------- 235 (333)
..++..++ ..+..+|||+|||+|.++..+++. .|..+++++|+ +.+++.++++ .++
T Consensus 86 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 164 (258)
T 2pwy_A 86 SAMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE 164 (258)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT
T ss_pred HHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC
Confidence 34556555 778889999999999999999998 77899999998 7777655421 111
Q ss_pred ----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHh
Q 035738 236 ----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATG 311 (333)
Q Consensus 236 ----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~ 311 (333)
.|+.++++.. ++|+++.++|+|||++++.++... ...++.+.+++
T Consensus 165 ~~~D~v~~~~~~~~--~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~~~l~~ 213 (258)
T 2pwy_A 165 AAYDGVALDLMEPW--KVLEKAALALKPDRFLVAYLPNIT-----------------------------QVLELVRAAEA 213 (258)
T ss_dssp TCEEEEEEESSCGG--GGHHHHHHHEEEEEEEEEEESCHH-----------------------------HHHHHHHHHTT
T ss_pred CCcCEEEECCcCHH--HHHHHHHHhCCCCCEEEEEeCCHH-----------------------------HHHHHHHHHHH
Confidence 4444555554 799999999999999999875210 13466677788
Q ss_pred CCCCeeEEee
Q 035738 312 AGFSGISCER 321 (333)
Q Consensus 312 aGf~~~~~~~ 321 (333)
+||..+++..
T Consensus 214 ~gf~~~~~~~ 223 (258)
T 2pwy_A 214 HPFRLERVLE 223 (258)
T ss_dssp TTEEEEEEEE
T ss_pred CCCceEEEEE
Confidence 9998877654
No 124
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=98.85 E-value=4.3e-09 Score=89.49 Aligned_cols=78 Identities=18% Similarity=0.278 Sum_probs=60.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe--------------------EEEccCC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM--------------------WILHDWN 242 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv--------------------~vLh~~~ 242 (333)
...+|||||||+|.++..+++.+|+.+++++|+ +.+++.|+++ +++ .|+.+++
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 456899999999999999999999999999999 7888776532 222 3333333
Q ss_pred hhH-----------HHHHHHHHHHhCCCCcEEEEEe
Q 035738 243 DEH-----------CLKLLKNCYKSIPEDGKVIAVE 267 (333)
Q Consensus 243 ~~~-----------~~~lL~~~~~~L~pgG~l~i~e 267 (333)
++. ...+|+++.+.|+|||.+++..
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 220 2478999999999999998864
No 125
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=98.82 E-value=1.7e-08 Score=83.39 Aligned_cols=104 Identities=18% Similarity=0.223 Sum_probs=75.4
Q ss_pred HHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe-----------------
Q 035738 181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM----------------- 235 (333)
Q Consensus 181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv----------------- 235 (333)
++..+. ..+..+|||+|||+|.++..+++.. .+++++|+ +.+++.++++ .++
T Consensus 25 ~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 101 (192)
T 1l3i_A 25 IMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDI 101 (192)
T ss_dssp HHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCE
T ss_pred HHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCC
Confidence 344444 6677899999999999999999887 78999999 7777766531 111
Q ss_pred -EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCC
Q 035738 236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGF 314 (333)
Q Consensus 236 -~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf 314 (333)
.|+.....+....+++++.+.|+|||++++...... +..++.+++++.||
T Consensus 102 D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~~~~~-----------------------------~~~~~~~~l~~~g~ 152 (192)
T 1l3i_A 102 DIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAILLE-----------------------------TKFEAMECLRDLGF 152 (192)
T ss_dssp EEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECBHH-----------------------------HHHHHHHHHHHTTC
T ss_pred CEEEECCchHHHHHHHHHHHHhcCCCcEEEEEecCcc-----------------------------hHHHHHHHHHHCCC
Confidence 233332323456899999999999999998765210 14578889999999
Q ss_pred Ce
Q 035738 315 SG 316 (333)
Q Consensus 315 ~~ 316 (333)
.+
T Consensus 153 ~~ 154 (192)
T 1l3i_A 153 DV 154 (192)
T ss_dssp CC
T ss_pred ce
Confidence 43
No 126
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=98.81 E-value=6.6e-09 Score=91.91 Aligned_cols=111 Identities=14% Similarity=0.160 Sum_probs=82.2
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hhHhhhCCCC-------CCe--------------
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTK-YPYIKGINFDL-PHVIEHVPPH-------PCM-------------- 235 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~gv-------------- 235 (333)
..++..++ ..+..+|||+|||+|.++..++++ .|..+++++|+ +.+++.++++ .++
T Consensus 102 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 180 (277)
T 1o54_A 102 SFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEK 180 (277)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCC
T ss_pred HHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCC
Confidence 34555555 677889999999999999999999 68899999999 7787766532 111
Q ss_pred ---EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhC
Q 035738 236 ---WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGA 312 (333)
Q Consensus 236 ---~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~a 312 (333)
.|+.+.++.. .+|+++.++|+|||++++.++... ..+++.+.|+++
T Consensus 181 ~~D~V~~~~~~~~--~~l~~~~~~L~pgG~l~~~~~~~~-----------------------------~~~~~~~~l~~~ 229 (277)
T 1o54_A 181 DVDALFLDVPDPW--NYIDKCWEALKGGGRFATVCPTTN-----------------------------QVQETLKKLQEL 229 (277)
T ss_dssp SEEEEEECCSCGG--GTHHHHHHHEEEEEEEEEEESSHH-----------------------------HHHHHHHHHHHS
T ss_pred ccCEEEECCcCHH--HHHHHHHHHcCCCCEEEEEeCCHH-----------------------------HHHHHHHHHHHC
Confidence 4445555554 799999999999999999875211 134556677788
Q ss_pred CCCeeEEee
Q 035738 313 GFSGISCER 321 (333)
Q Consensus 313 Gf~~~~~~~ 321 (333)
||+.+++..
T Consensus 230 gf~~~~~~~ 238 (277)
T 1o54_A 230 PFIRIEVWE 238 (277)
T ss_dssp SEEEEEEEC
T ss_pred CCceeEEEE
Confidence 888776654
No 127
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=98.80 E-value=3.4e-09 Score=87.31 Aligned_cols=115 Identities=10% Similarity=0.038 Sum_probs=81.4
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------C-Ce--------------------EEEcc
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------P-CM--------------------WILHD 240 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-gv--------------------~vLh~ 240 (333)
....+|||+|||+|-++..++...|+.+++++|+ +.+++.++++ . ++ ++||.
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~~~~~~~DvVLa~k~LHl 127 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESDVYKGTYDVVFLLKMLPV 127 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHHHTTSEEEEEEEETCHHH
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEecccccCCCCCcChhhHhhHHHh
Confidence 4678999999999999999999999999999999 8899887753 1 11 78888
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEe
Q 035738 241 WNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCE 320 (333)
Q Consensus 241 ~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 320 (333)
+ ++. ...+.++.++|+|||.++-.+.-.-.++. ++-...-.+.|.+.. ...+.+++..
T Consensus 128 L-~~~-~~al~~v~~~L~pggvfISfptksl~Gr~-------------------~gm~~~Y~~~~~~~~-~~~~~~~~~~ 185 (200)
T 3fzg_A 128 L-KQQ-DVNILDFLQLFHTQNFVISFPIKSLSGKE-------------------KGMEENYQLWFESFT-KGWIKILDSK 185 (200)
T ss_dssp H-HHT-TCCHHHHHHTCEEEEEEEEEECCCCC--C-------------------TTCCCCHHHHHHHHT-TTTSCEEEEE
T ss_pred h-hhh-HHHHHHHHHHhCCCCEEEEeChHHhcCCC-------------------cchhhhHHHHHHHhc-cCcceeeeee
Confidence 8 332 35666999999999999988842211111 111222355667766 5555666666
Q ss_pred ecCCc
Q 035738 321 RAIGN 325 (333)
Q Consensus 321 ~~~~~ 325 (333)
..++-
T Consensus 186 ~~~nE 190 (200)
T 3fzg_A 186 VIGNE 190 (200)
T ss_dssp EETTE
T ss_pred eeCce
Confidence 66543
No 128
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=98.80 E-value=7e-09 Score=89.56 Aligned_cols=80 Identities=18% Similarity=0.246 Sum_probs=59.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCC------------CCCCe--------------------
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVP------------PHPCM-------------------- 235 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------~~~gv-------------------- 235 (333)
....+|||||||+|.++..+++.+|+.+++++|+ +.+++.|+ ...++
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 4567899999999999999999999999999999 77776442 11222
Q ss_pred -EEEccCChhHH-----------HHHHHHHHHhCCCCcEEEEEee
Q 035738 236 -WILHDWNDEHC-----------LKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 236 -~vLh~~~~~~~-----------~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
.|..+++++.. ..+|++++++|+|||.|++...
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 33333443321 3699999999999999988643
No 129
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=98.79 E-value=3.9e-09 Score=90.13 Aligned_cols=79 Identities=10% Similarity=0.167 Sum_probs=59.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe---------------------EEEcc-
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM---------------------WILHD- 240 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv---------------------~vLh~- 240 (333)
...+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++ .++ .|..+
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 457899999999999999999999999999999 7887766432 122 22222
Q ss_pred ---CChhHH-------HHHHHHHHHhCCCCcEEEEEee
Q 035738 241 ---WNDEHC-------LKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 241 ---~~~~~~-------~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
|+.... ..++++++++|+|||++++...
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 222111 1499999999999999888654
No 130
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=98.78 E-value=4.7e-09 Score=94.48 Aligned_cols=133 Identities=14% Similarity=0.067 Sum_probs=82.7
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC--------------------------CC--------
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP--------------------------HP-------- 233 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------------------------~~-------- 233 (333)
....+|||||||+|..+..+++ .+..+++++|+ +.+++.+++ .+
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKK-GRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCCCEEEEECCCCcHHHHHHHh-cCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 3678999999999999999887 46779999999 777654321 01
Q ss_pred --Ce------EEEccC--ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCC------C-CCcc--------------cccc
Q 035738 234 --CM------WILHDW--NDEHCLKLLKNCYKSIPEDGKVIAVELMLPEV------P-NTSI--------------ESKS 282 (333)
Q Consensus 234 --gv------~vLh~~--~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~------~-~~~~--------------~~~~ 282 (333)
.. .++|+. +.++...+|++++++|+|||.+++..+..+.- . .... ...+
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 191 (313)
T 3bgv_A 112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLF 191 (313)
T ss_dssp TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHHHHTTSSSSEEECSSEEEEESCSSCCCSS
T ss_pred CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHHHHHHHHhhccCccCCeeEEEEeCCCCCCCCc
Confidence 11 455655 33556799999999999999999987743110 0 0000 0000
Q ss_pred ccchhhHH-HhhCCCCCcCCHHHHHHHHHhCCCCeeEEeec
Q 035738 283 NSDSDVLM-MIQSPGGKERTRHEFMTLATGAGFSGISCERA 322 (333)
Q Consensus 283 ~~~~d~~m-~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 322 (333)
.....+.+ ..........+.+++.++++++||+++.....
T Consensus 192 ~~~~~f~l~~~~~~~~~~~~~~~~~~l~~~~G~~~v~~~~f 232 (313)
T 3bgv_A 192 GCKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTF 232 (313)
T ss_dssp CCEEEEEEC---CCEEECCCHHHHHHHGGGGTEEEEEEEEH
T ss_pred cceEEEEECCcccCcceEEcHHHHHHHHHHcCcEEEEecCH
Confidence 00000000 00000012357899999999999999987654
No 131
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=98.78 E-value=1.3e-08 Score=90.13 Aligned_cols=81 Identities=12% Similarity=0.118 Sum_probs=62.8
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe----------------EEEccCChh
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM----------------WILHDWNDE 244 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv----------------~vLh~~~~~ 244 (333)
..++.+|||||||+|.++..++.+.++.+++++|+ |.+++.|+++ .++ .|+-...-+
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~~~ 199 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAALAE 199 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTTCS
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCCcc
Confidence 77889999999999988877777788999999999 8999988753 122 222111123
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEee
Q 035738 245 HCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 245 ~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
+..++++++++.|+|||+|++.+.
T Consensus 200 d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 200 PKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp CHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred CHHHHHHHHHHHcCCCcEEEEEcC
Confidence 335899999999999999999774
No 132
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=98.77 E-value=2.1e-08 Score=90.02 Aligned_cols=109 Identities=17% Similarity=0.198 Sum_probs=78.2
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------CCe--------------------EE
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------PCM--------------------WI 237 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~gv--------------------~v 237 (333)
.++.+|||||||+|..+..+++..+..+++++|+ +.+++.++++ +++ .|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 4568999999999999999998878889999999 7888766532 112 23
Q ss_pred EccCChhHH-------HHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHH
Q 035738 238 LHDWNDEHC-------LKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLAT 310 (333)
Q Consensus 238 Lh~~~~~~~-------~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~ 310 (333)
+.+.++... .+++++++++|+|||++++..... +.+ .....++.+.++
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~--------------~~~-----------~~~~~~~~~~l~ 228 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESI--------------WLD-----------LELIEKMSRFIR 228 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCT--------------TTC-----------HHHHHHHHHHHH
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCc--------------ccc-----------hHHHHHHHHHHH
Confidence 333322211 478999999999999999874310 000 113668899999
Q ss_pred hCCCCeeEEeec
Q 035738 311 GAGFSGISCERA 322 (333)
Q Consensus 311 ~aGf~~~~~~~~ 322 (333)
++||..+++...
T Consensus 229 ~~GF~~v~~~~~ 240 (304)
T 3bwc_A 229 ETGFASVQYALM 240 (304)
T ss_dssp HHTCSEEEEEEC
T ss_pred hCCCCcEEEEEe
Confidence 999998887654
No 133
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=98.75 E-value=1.5e-08 Score=100.15 Aligned_cols=82 Identities=13% Similarity=0.168 Sum_probs=67.1
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCCC------------CCCe------------------
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVPP------------HPCM------------------ 235 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------------~~gv------------------ 235 (333)
..+..+|||||||+|.++..+++.. |..+++++|+ +.+++.|++ .+++
T Consensus 719 ~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFD 798 (950)
T 3htx_A 719 ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVD 798 (950)
T ss_dssp HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCC
T ss_pred ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCee
Confidence 3467899999999999999999998 5679999999 888887754 0111
Q ss_pred -----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 035738 236 -----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELML 270 (333)
Q Consensus 236 -----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~ 270 (333)
.++|+++++....+++++++.|+|| .++|..+..
T Consensus 799 lVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ 837 (950)
T 3htx_A 799 IGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY 837 (950)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred EEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence 6889999988888999999999999 777766543
No 134
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=98.75 E-value=3.6e-09 Score=90.65 Aligned_cols=99 Identities=11% Similarity=0.196 Sum_probs=72.0
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-CCe--------------------EEEccCChhHH
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-PCM--------------------WILHDWNDEHC 246 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~gv--------------------~vLh~~~~~~~ 246 (333)
.+..+|||||||+|.++..+++. ..+++++|+ +.+++.++++ +++ .|+.. . +.
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~-~--~~ 121 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR-R--GP 121 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE-S--CC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC-C--CH
Confidence 45689999999999999999988 568999999 8888776542 222 12111 1 22
Q ss_pred HHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEeec
Q 035738 247 LKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCERA 322 (333)
Q Consensus 247 ~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 322 (333)
..+|+++++.|+|||+++ .. + ...+.+++.++++++||..+++...
T Consensus 122 ~~~l~~~~~~LkpgG~l~--~~---------------------------~-~~~~~~~~~~~l~~~Gf~~~~~~~~ 167 (226)
T 3m33_A 122 TSVILRLPELAAPDAHFL--YV---------------------------G-PRLNVPEVPERLAAVGWDIVAEDHV 167 (226)
T ss_dssp SGGGGGHHHHEEEEEEEE--EE---------------------------E-SSSCCTHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHcCCCcEEE--Ee---------------------------C-CcCCHHHHHHHHHHCCCeEEEEEee
Confidence 478999999999999998 00 0 1123557889999999988776543
No 135
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=98.75 E-value=1.7e-08 Score=87.32 Aligned_cols=106 Identities=16% Similarity=0.165 Sum_probs=77.1
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe---------------------EEE-
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM---------------------WIL- 238 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv---------------------~vL- 238 (333)
+....+|||||||+|..+..++...|+.+++++|+ +.+++.++++ +++ .|+
T Consensus 68 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~ 147 (240)
T 1xdz_A 68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA 147 (240)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred cCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEE
Confidence 34678999999999999999999999999999999 7787766532 122 111
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeE
Q 035738 239 HDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGIS 318 (333)
Q Consensus 239 h~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 318 (333)
..+.+ ...+++.+.+.|+|||++++.+..... ...+++.+.++++||+.++
T Consensus 148 ~~~~~--~~~~l~~~~~~LkpgG~l~~~~g~~~~---------------------------~~~~~~~~~l~~~g~~~~~ 198 (240)
T 1xdz_A 148 RAVAR--LSVLSELCLPLVKKNGLFVALKAASAE---------------------------EELNAGKKAITTLGGELEN 198 (240)
T ss_dssp ECCSC--HHHHHHHHGGGEEEEEEEEEEECC-CH---------------------------HHHHHHHHHHHHTTEEEEE
T ss_pred eccCC--HHHHHHHHHHhcCCCCEEEEEeCCCch---------------------------HHHHHHHHHHHHcCCeEeE
Confidence 12332 358999999999999999886321000 0135678889999999887
Q ss_pred Eeec
Q 035738 319 CERA 322 (333)
Q Consensus 319 ~~~~ 322 (333)
+...
T Consensus 199 ~~~~ 202 (240)
T 1xdz_A 199 IHSF 202 (240)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7643
No 136
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=98.74 E-value=1.2e-08 Score=88.73 Aligned_cols=80 Identities=18% Similarity=0.288 Sum_probs=61.0
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC--------------CCCe-----------------
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP--------------HPCM----------------- 235 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------------~~gv----------------- 235 (333)
.....+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..++
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence 34667999999999999999999999999999998 777764421 1121
Q ss_pred ----EEEccCChhHH-----------HHHHHHHHHhCCCCcEEEEEe
Q 035738 236 ----WILHDWNDEHC-----------LKLLKNCYKSIPEDGKVIAVE 267 (333)
Q Consensus 236 ----~vLh~~~~~~~-----------~~lL~~~~~~L~pgG~l~i~e 267 (333)
.|+..++++.. ..+++++.++|+|||.|++..
T Consensus 127 ~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 127 GQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp TCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 44444554421 379999999999999999853
No 137
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=98.74 E-value=2.2e-08 Score=86.83 Aligned_cols=83 Identities=17% Similarity=0.252 Sum_probs=65.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC-------CCe------------------------
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH-------PCM------------------------ 235 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~gv------------------------ 235 (333)
.++.+|||||||+|..+..+++..| +.+++++|+ +.+++.++++ ..+
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence 3567999999999999999999986 789999999 7887776542 112
Q ss_pred EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 035738 236 WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLP 271 (333)
Q Consensus 236 ~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~ 271 (333)
.|+.+.+......+|+++.+.|+|||.|++-+....
T Consensus 139 ~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~~~~~ 174 (242)
T 3r3h_A 139 FIFIDADKTNYLNYYELALKLVTPKGLIAIDNIFWD 174 (242)
T ss_dssp EEEEESCGGGHHHHHHHHHHHEEEEEEEEEECSSSS
T ss_pred EEEEcCChHHhHHHHHHHHHhcCCCeEEEEECCccC
Confidence 344444445566899999999999999998776654
No 138
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=98.73 E-value=1.3e-08 Score=88.61 Aligned_cols=106 Identities=11% Similarity=0.016 Sum_probs=77.9
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe---------------------EEE-
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM---------------------WIL- 238 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv---------------------~vL- 238 (333)
.....+|||||||+|..+..++..+|+.+++++|+ +.+++.++++ .++ .|+
T Consensus 78 ~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s 157 (249)
T 3g89_A 78 WQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVA 157 (249)
T ss_dssp CCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEE
Confidence 34678999999999999999999999999999999 7888776642 122 111
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeE
Q 035738 239 HDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGIS 318 (333)
Q Consensus 239 h~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 318 (333)
+.+.+ ...+++.+.+.|+|||++++....... -..+++.+.++..||+..+
T Consensus 158 ~a~~~--~~~ll~~~~~~LkpgG~l~~~~g~~~~---------------------------~e~~~~~~~l~~~G~~~~~ 208 (249)
T 3g89_A 158 RAVAP--LCVLSELLLPFLEVGGAAVAMKGPRVE---------------------------EELAPLPPALERLGGRLGE 208 (249)
T ss_dssp ESSCC--HHHHHHHHGGGEEEEEEEEEEECSCCH---------------------------HHHTTHHHHHHHHTEEEEE
T ss_pred CCcCC--HHHHHHHHHHHcCCCeEEEEEeCCCcH---------------------------HHHHHHHHHHHHcCCeEEE
Confidence 22232 247999999999999999986642110 0033567778889999888
Q ss_pred Eeec
Q 035738 319 CERA 322 (333)
Q Consensus 319 ~~~~ 322 (333)
+.+.
T Consensus 209 ~~~~ 212 (249)
T 3g89_A 209 VLAL 212 (249)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8765
No 139
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=98.71 E-value=5e-08 Score=83.19 Aligned_cols=114 Identities=10% Similarity=0.042 Sum_probs=83.0
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CC-e-----EEEccCC------------
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PC-M-----WILHDWN------------ 242 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~g-v-----~vLh~~~------------ 242 (333)
..+..+|+|||||+|..+..+++..|..+++++|+ |.+++.|+++ .+ + +.+..++
T Consensus 13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG 92 (225)
T 3kr9_A 13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAG 92 (225)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcC
Confidence 34567999999999999999999999999999999 8898888754 11 2 1222222
Q ss_pred --hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEe
Q 035738 243 --DEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCE 320 (333)
Q Consensus 243 --~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 320 (333)
.+-...+|..+.+.|+|+|++++ .+. . ..+..+++|.+.||.+++-.
T Consensus 93 ~Gg~~i~~Il~~~~~~L~~~~~lVl-q~~--~----------------------------~~~~vr~~L~~~Gf~i~~e~ 141 (225)
T 3kr9_A 93 MGGRLIARILEEGLGKLANVERLIL-QPN--N----------------------------REDDLRIWLQDHGFQIVAES 141 (225)
T ss_dssp ECHHHHHHHHHHTGGGCTTCCEEEE-EES--S----------------------------CHHHHHHHHHHTTEEEEEEE
T ss_pred CChHHHHHHHHHHHHHhCCCCEEEE-ECC--C----------------------------CHHHHHHHHHHCCCEEEEEE
Confidence 22346889999999999888766 331 0 25678999999999988754
Q ss_pred e---cCCceeEEEEe
Q 035738 321 R---AIGNLWVMEFY 332 (333)
Q Consensus 321 ~---~~~~~~vie~~ 332 (333)
- .+-+|.+|.+.
T Consensus 142 lv~e~~~~Yeii~~~ 156 (225)
T 3kr9_A 142 ILEEAGKFYEILVVE 156 (225)
T ss_dssp EEEETTEEEEEEEEE
T ss_pred EEEECCEEEEEEEEE
Confidence 2 23456677664
No 140
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=98.70 E-value=1e-08 Score=85.66 Aligned_cols=82 Identities=13% Similarity=0.182 Sum_probs=61.8
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCCCC-------CCe-------------------EEEc
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVPPH-------PCM-------------------WILH 239 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~gv-------------------~vLh 239 (333)
..+..+|||+|||+|..+..+++++ |+.+++++|+ +.+++.++++ .++ .|+.
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 4567899999999999999999986 6789999999 7888776542 111 2221
Q ss_pred cC---C---------hhHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738 240 DW---N---------DEHCLKLLKNCYKSIPEDGKVIAVELM 269 (333)
Q Consensus 240 ~~---~---------~~~~~~lL~~~~~~L~pgG~l~i~e~~ 269 (333)
+. + .+...++++++.+.|+|||++++....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 141 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence 11 1 223457999999999999999998764
No 141
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=98.70 E-value=1.1e-08 Score=87.39 Aligned_cols=83 Identities=16% Similarity=0.141 Sum_probs=65.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC------C-Ce------------------------
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH------P-CM------------------------ 235 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~-gv------------------------ 235 (333)
.+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.++++ . .+
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 3567999999999999999999988 789999999 7887766542 1 11
Q ss_pred EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 035738 236 WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLP 271 (333)
Q Consensus 236 ~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~ 271 (333)
.|+.+.+......+++++.+.|+|||++++.+...+
T Consensus 143 ~v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 178 (225)
T 3tr6_A 143 LIYIDADKANTDLYYEESLKLLREGGLIAVDNVLRR 178 (225)
T ss_dssp EEEECSCGGGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred EEEECCCHHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 344344445567899999999999999998777654
No 142
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=98.70 E-value=8.4e-08 Score=78.61 Aligned_cols=105 Identities=14% Similarity=0.118 Sum_probs=75.6
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe-----------------
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM----------------- 235 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv----------------- 235 (333)
.+++.+. ..+..+|||+|||+|.++..+++ +..+++++|+ +.+++.++++ +++
T Consensus 26 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 102 (183)
T 2yxd_A 26 VSIGKLN-LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFN 102 (183)
T ss_dssp HHHHHHC-CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCS
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCc
Confidence 3444444 56678999999999999999998 7889999999 7888776542 222
Q ss_pred EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCC
Q 035738 236 WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFS 315 (333)
Q Consensus 236 ~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~ 315 (333)
.|+.... .....+++++++. |||++++...... +..++.+++++.||.
T Consensus 103 ~i~~~~~-~~~~~~l~~~~~~--~gG~l~~~~~~~~-----------------------------~~~~~~~~l~~~g~~ 150 (183)
T 2yxd_A 103 KAFIGGT-KNIEKIIEILDKK--KINHIVANTIVLE-----------------------------NAAKIINEFESRGYN 150 (183)
T ss_dssp EEEECSC-SCHHHHHHHHHHT--TCCEEEEEESCHH-----------------------------HHHHHHHHHHHTTCE
T ss_pred EEEECCc-ccHHHHHHHHhhC--CCCEEEEEecccc-----------------------------cHHHHHHHHHHcCCe
Confidence 3333323 4456899999988 9999998875211 145678899999986
Q ss_pred eeEE
Q 035738 316 GISC 319 (333)
Q Consensus 316 ~~~~ 319 (333)
+..+
T Consensus 151 ~~~~ 154 (183)
T 2yxd_A 151 VDAV 154 (183)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5544
No 143
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=98.70 E-value=5.7e-08 Score=83.02 Aligned_cols=114 Identities=7% Similarity=-0.024 Sum_probs=83.0
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CC----e-------------------EEEcc
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PC----M-------------------WILHD 240 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~g----v-------------------~vLh~ 240 (333)
.++..+|+|||||+|..+..+++..|..+++++|+ |.+++.|+++ .+ + -++..
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaG 98 (230)
T 3lec_A 19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICG 98 (230)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeC
Confidence 34668999999999999999999999889999999 8899888754 11 2 11122
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEe
Q 035738 241 WNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCE 320 (333)
Q Consensus 241 ~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 320 (333)
..-+-...+|....+.|+++|++++.-. ...+++++||.+.||.+++-.
T Consensus 99 mGg~lI~~IL~~~~~~l~~~~~lIlqp~-------------------------------~~~~~lr~~L~~~Gf~i~~E~ 147 (230)
T 3lec_A 99 MGGRLIADILNNDIDKLQHVKTLVLQPN-------------------------------NREDDLRKWLAANDFEIVAED 147 (230)
T ss_dssp ECHHHHHHHHHHTGGGGTTCCEEEEEES-------------------------------SCHHHHHHHHHHTTEEEEEEE
T ss_pred CchHHHHHHHHHHHHHhCcCCEEEEECC-------------------------------CChHHHHHHHHHCCCEEEEEE
Confidence 2333456788888888888887665532 026688999999999988765
Q ss_pred ec---CCceeEEEEe
Q 035738 321 RA---IGNLWVMEFY 332 (333)
Q Consensus 321 ~~---~~~~~vie~~ 332 (333)
-+ +-+|.+|.+.
T Consensus 148 lv~e~~~~Yeii~~~ 162 (230)
T 3lec_A 148 ILTENDKRYEILVVK 162 (230)
T ss_dssp EEEC--CEEEEEEEE
T ss_pred EEEECCEEEEEEEEE
Confidence 32 3456777764
No 144
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=98.70 E-value=5e-08 Score=83.49 Aligned_cols=108 Identities=14% Similarity=0.149 Sum_probs=77.1
Q ss_pred CCCCCeEEEEcCC-ccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---C--Ce-------------------EEEccC
Q 035738 188 FDNIKQLVDVGGG-IGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---P--CM-------------------WILHDW 241 (333)
Q Consensus 188 ~~~~~~vlDVGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~--gv-------------------~vLh~~ 241 (333)
..+..+|||+||| +|.++..+++.. ..+++++|+ +.+++.++++ . ++ .|+.+.
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 4567899999999 999999999987 778999999 8888776532 0 11 233221
Q ss_pred C----------------------hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCc
Q 035738 242 N----------------------DEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKE 299 (333)
Q Consensus 242 ~----------------------~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~ 299 (333)
+ .+...++++++.+.|+|||++++.-+..+
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------------------- 183 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE---------------------------- 183 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH----------------------------
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH----------------------------
Confidence 1 01125899999999999999998743100
Q ss_pred CCHHHHHHHHHhCCCCeeEEeecCC
Q 035738 300 RTRHEFMTLATGAGFSGISCERAIG 324 (333)
Q Consensus 300 rt~~e~~~ll~~aGf~~~~~~~~~~ 324 (333)
...+++.++++++||.+..+....+
T Consensus 184 ~~~~~~~~~l~~~g~~~~~~~~~~g 208 (230)
T 3evz_A 184 KLLNVIKERGIKLGYSVKDIKFKVG 208 (230)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECCC
T ss_pred hHHHHHHHHHHHcCCceEEEEecCC
Confidence 1256888999999997666654433
No 145
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=98.70 E-value=2.7e-08 Score=88.07 Aligned_cols=105 Identities=13% Similarity=0.109 Sum_probs=78.8
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CC-e-----------------EEEccCCh
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PC-M-----------------WILHDWND 243 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~g-v-----------------~vLh~~~~ 243 (333)
.+..+|||+|||+|.++..+++..+. +++++|+ |.+++.++++ .+ + .|+.+.+.
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p~ 202 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV 202 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCch
Confidence 45789999999999999999999877 8999999 8888876542 11 1 34444442
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeE
Q 035738 244 EHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGIS 318 (333)
Q Consensus 244 ~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 318 (333)
...++++++.+.|+|||++++.+...... ......+++.+.++++||+...
T Consensus 203 -~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-----------------------~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 203 -RTHEFIPKALSIAKDGAIIHYHNTVPEKL-----------------------MPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp -SGGGGHHHHHHHEEEEEEEEEEEEEEGGG-----------------------TTTTTHHHHHHHHHHTTCEEEE
T ss_pred -hHHHHHHHHHHHCCCCeEEEEEEeecccc-----------------------ccccHHHHHHHHHHHcCCeeEE
Confidence 23579999999999999999998853210 0012367889999999998765
No 146
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=98.68 E-value=8.1e-08 Score=83.99 Aligned_cols=115 Identities=10% Similarity=0.069 Sum_probs=81.5
Q ss_pred CC-CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------C-Ce--------------------EEE
Q 035738 188 FD-NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------P-CM--------------------WIL 238 (333)
Q Consensus 188 ~~-~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-gv--------------------~vL 238 (333)
.. +..+|||+|||+|..+..++++.+. +++++|+ +.+++.++++ . .+ .|+
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 56 6789999999999999999998776 9999999 8888776542 1 11 333
Q ss_pred ccCC-----------------------hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCC
Q 035738 239 HDWN-----------------------DEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSP 295 (333)
Q Consensus 239 h~~~-----------------------~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~ 295 (333)
.+.+ ......+++.+.+.|+|||+++++-. .
T Consensus 125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---~----------------------- 178 (259)
T 3lpm_A 125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR---P----------------------- 178 (259)
T ss_dssp ECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEEC---T-----------------------
T ss_pred ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc---H-----------------------
Confidence 3211 02235799999999999999998521 1
Q ss_pred CCCcCCHHHHHHHHHhCCCCeeEEeecC------CceeEEEEeC
Q 035738 296 GGKERTRHEFMTLATGAGFSGISCERAI------GNLWVMEFYK 333 (333)
Q Consensus 296 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~------~~~~vie~~~ 333 (333)
...+++.+++++.||...++.+.. ....+++++|
T Consensus 179 ----~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~~~k 218 (259)
T 3lpm_A 179 ----ERLLDIIDIMRKYRLEPKRIQFVHPRSDREANTVLVEGIK 218 (259)
T ss_dssp ----TTHHHHHHHHHHTTEEEEEEEEEESSTTSCCSEEEEEEEE
T ss_pred ----HHHHHHHHHHHHCCCceEEEEEeecCCCCCcEEEEEEEEe
Confidence 025577888899999888776542 2345666553
No 147
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=98.66 E-value=6.4e-09 Score=94.98 Aligned_cols=89 Identities=19% Similarity=0.238 Sum_probs=67.3
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CC-----------------e--
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PC-----------------M-- 235 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~g-----------------v-- 235 (333)
..+++.++ .....+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++ .+ .
T Consensus 186 ~~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~ 264 (343)
T 2pjd_A 186 QLLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFDM 264 (343)
T ss_dssp HHHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEEE
T ss_pred HHHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCeeE
Confidence 34555554 33456999999999999999999999999999999 7777766542 00 1
Q ss_pred ----EEEcc---CChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738 236 ----WILHD---WNDEHCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 236 ----~vLh~---~~~~~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
..+|. ++.+...++|++++++|+|||+++++..
T Consensus 265 Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 304 (343)
T 2pjd_A 265 IISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (343)
T ss_dssp EEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred EEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence 22332 1344567999999999999999999876
No 148
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=98.64 E-value=4e-08 Score=90.64 Aligned_cols=88 Identities=17% Similarity=0.229 Sum_probs=66.5
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------C---Ce--------------
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------P---CM-------------- 235 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~---gv-------------- 235 (333)
.+++.++ .....+|||+|||+|.++..+++++|..+++++|+ +.+++.++++ . .+
T Consensus 213 ~ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~ 291 (375)
T 4dcm_A 213 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 291 (375)
T ss_dssp HHHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTT
T ss_pred HHHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCC
Confidence 3555555 44558999999999999999999999999999999 7888776542 0 11
Q ss_pred ---EEEcc--------CChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738 236 ---WILHD--------WNDEHCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 236 ---~vLh~--------~~~~~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
.|+.+ .++....++++++.+.|+|||+++++..
T Consensus 292 ~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n 335 (375)
T 4dcm_A 292 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 335 (375)
T ss_dssp CEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 33322 2344455899999999999999999754
No 149
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=98.63 E-value=1.2e-08 Score=86.02 Aligned_cols=81 Identities=11% Similarity=0.080 Sum_probs=61.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----CCe------------------E-----EEcc
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----PCM------------------W-----ILHD 240 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~gv------------------~-----vLh~ 240 (333)
....+|||||||+|.++..+++..+. +++++|+ +.+++.+++. +++ . ++|.
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence 46789999999999999999998765 8999999 7777765431 111 1 2222
Q ss_pred CC-------------hhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 035738 241 WN-------------DEHCLKLLKNCYKSIPEDGKVIAVELML 270 (333)
Q Consensus 241 ~~-------------~~~~~~lL~~~~~~L~pgG~l~i~e~~~ 270 (333)
+. .+...++|+++.++|+|||++++.++..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 22 2345689999999999999999998743
No 150
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=98.63 E-value=9.2e-08 Score=82.40 Aligned_cols=114 Identities=8% Similarity=-0.022 Sum_probs=82.1
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CC----e-----EEE--------------cc
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PC----M-----WIL--------------HD 240 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~g----v-----~vL--------------h~ 240 (333)
.++..+|+|||||+|.++..+++..|..+++++|+ |.+++.|+++ .+ + +.+ -.
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviag 98 (244)
T 3gnl_A 19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAG 98 (244)
T ss_dssp CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeC
Confidence 34668999999999999999999999889999999 8899888754 11 2 111 11
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeEEe
Q 035738 241 WNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGISCE 320 (333)
Q Consensus 241 ~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 320 (333)
..-+-...+|....+.|++++++++.-.. ..+.+++||.+.||.+++-.
T Consensus 99 mGg~lI~~IL~~~~~~L~~~~~lIlq~~~-------------------------------~~~~lr~~L~~~Gf~i~~E~ 147 (244)
T 3gnl_A 99 MGGTLIRTILEEGAAKLAGVTKLILQPNI-------------------------------AAWQLREWSEQNNWLITSEA 147 (244)
T ss_dssp ECHHHHHHHHHHTGGGGTTCCEEEEEESS-------------------------------CHHHHHHHHHHHTEEEEEEE
T ss_pred CchHHHHHHHHHHHHHhCCCCEEEEEcCC-------------------------------ChHHHHHHHHHCCCEEEEEE
Confidence 22233567888888888888777665320 26688999999999986543
Q ss_pred ---ecCCceeEEEEe
Q 035738 321 ---RAIGNLWVMEFY 332 (333)
Q Consensus 321 ---~~~~~~~vie~~ 332 (333)
..+-+|.+|.+.
T Consensus 148 lv~e~~k~Yeii~~~ 162 (244)
T 3gnl_A 148 ILREDNKVYEIMVLA 162 (244)
T ss_dssp EEEETTEEEEEEEEE
T ss_pred EEEECCEEEEEEEEE
Confidence 233456677664
No 151
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=98.62 E-value=1.2e-08 Score=92.84 Aligned_cols=89 Identities=13% Similarity=0.152 Sum_probs=66.0
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hhHhhhCCCC-----------------CCe----
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTK-YPYIKGINFDL-PHVIEHVPPH-----------------PCM---- 235 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-----------------~gv---- 235 (333)
..++..++ ..+..+|||||||+|.++..+++. .|+.+++++|+ +.+++.|+++ .++
T Consensus 95 ~~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~ 173 (336)
T 2b25_A 95 NMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 173 (336)
T ss_dssp HHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence 34555555 667889999999999999999998 58899999999 7777655321 111
Q ss_pred ----------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 035738 236 ----------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELML 270 (333)
Q Consensus 236 ----------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~ 270 (333)
.|+.+.+++. .+++++.+.|+|||++++.....
T Consensus 174 ~d~~~~~~~~~~~~fD~V~~~~~~~~--~~l~~~~~~LkpgG~lv~~~~~~ 222 (336)
T 2b25_A 174 KDISGATEDIKSLTFDAVALDMLNPH--VTLPVFYPHLKHGGVCAVYVVNI 222 (336)
T ss_dssp SCTTCCC-------EEEEEECSSSTT--TTHHHHGGGEEEEEEEEEEESSH
T ss_pred CChHHcccccCCCCeeEEEECCCCHH--HHHHHHHHhcCCCcEEEEEeCCH
Confidence 3333444333 48999999999999999887643
No 152
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=98.62 E-value=8.7e-08 Score=89.52 Aligned_cols=94 Identities=13% Similarity=0.172 Sum_probs=68.8
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhC-------CCC--------CCeE------
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHV-------PPH--------PCMW------ 236 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~~--------~gv~------ 236 (333)
..++..+. .....+|||||||+|.++..+++.++..+++++|+ +.+++.| +++ .++.
T Consensus 232 ~~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~ 310 (433)
T 1u2z_A 232 SDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS 310 (433)
T ss_dssp HHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCc
Confidence 34555555 66788999999999999999999988889999999 7766655 221 1221
Q ss_pred ----------------EEc--cCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCC
Q 035738 237 ----------------ILH--DWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEV 273 (333)
Q Consensus 237 ----------------vLh--~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~ 273 (333)
|+. ..-.++..+.|+++.+.|+|||++++.+.+.+..
T Consensus 311 ~~~~~~~~~~~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~d~f~p~~ 365 (433)
T 1u2z_A 311 FVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLRSLT 365 (433)
T ss_dssp STTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred cccccccccccCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEeeccCCcc
Confidence 111 1112445578899999999999999999877654
No 153
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=98.62 E-value=1.7e-08 Score=86.86 Aligned_cols=83 Identities=16% Similarity=0.253 Sum_probs=64.3
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe--------------------EEEc
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM--------------------WILH 239 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv--------------------~vLh 239 (333)
..+..+|||||||+|..+..+++.+|..+++++|+ +.+++.++++ .++ .|+.
T Consensus 69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~ 148 (232)
T 3ntv_A 69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI 148 (232)
T ss_dssp HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence 34678999999999999999999889999999999 8888776542 122 3333
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 035738 240 DWNDEHCLKLLKNCYKSIPEDGKVIAVELML 270 (333)
Q Consensus 240 ~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~ 270 (333)
+.+......+++++.+.|+|||+|++-+...
T Consensus 149 ~~~~~~~~~~l~~~~~~LkpgG~lv~d~~~~ 179 (232)
T 3ntv_A 149 DAAKAQSKKFFEIYTPLLKHQGLVITDNVLY 179 (232)
T ss_dssp ETTSSSHHHHHHHHGGGEEEEEEEEEECTTG
T ss_pred cCcHHHHHHHHHHHHHhcCCCeEEEEeeCCc
Confidence 3444455689999999999999997755543
No 154
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=98.59 E-value=8.9e-08 Score=82.62 Aligned_cols=79 Identities=14% Similarity=0.095 Sum_probs=59.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHH----CCCCeEEEeec-hhHhhhCCCC-CCe----------------------EEEccC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTK----YPYIKGINFDL-PHVIEHVPPH-PCM----------------------WILHDW 241 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~-~gv----------------------~vLh~~ 241 (333)
+..+|||||||+|..+..+++. +|+.+++++|+ +.+++.++.. .++ .|+-+.
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 3579999999999999999987 78899999999 8887766431 111 122111
Q ss_pred ChhHHHHHHHHHHH-hCCCCcEEEEEee
Q 035738 242 NDEHCLKLLKNCYK-SIPEDGKVIAVEL 268 (333)
Q Consensus 242 ~~~~~~~lL~~~~~-~L~pgG~l~i~e~ 268 (333)
......++|+++.+ .|+|||++++.+.
T Consensus 161 ~~~~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 161 AHANTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp SCSSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred chHhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 12234679999997 9999999999876
No 155
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=98.57 E-value=7.3e-08 Score=82.32 Aligned_cols=80 Identities=8% Similarity=0.073 Sum_probs=62.5
Q ss_pred CCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC------C--Ce--------------------EEEcc
Q 035738 191 IKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH------P--CM--------------------WILHD 240 (333)
Q Consensus 191 ~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~--gv--------------------~vLh~ 240 (333)
..+|||||||+|..+..++++.| +.+++++|+ +.+++.++++ . .+ .|+.+
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 34999999999999999999875 789999999 8888776542 1 12 44445
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 035738 241 WNDEHCLKLLKNCYKSIPEDGKVIAVELML 270 (333)
Q Consensus 241 ~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~ 270 (333)
........+++++.+.|+|||.+++.+...
T Consensus 137 ~~~~~~~~~l~~~~~~LkpGG~lv~dn~~~ 166 (221)
T 3dr5_A 137 VSPMDLKALVDAAWPLLRRGGALVLADALL 166 (221)
T ss_dssp CCTTTHHHHHHHHHHHEEEEEEEEETTTTG
T ss_pred CcHHHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 444555689999999999999988865543
No 156
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=98.57 E-value=3.2e-08 Score=83.27 Aligned_cols=76 Identities=14% Similarity=0.212 Sum_probs=59.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe-----------------EEEc-cCChh
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM-----------------WILH-DWNDE 244 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv-----------------~vLh-~~~~~ 244 (333)
+..+|||||||+|..+..++..+|..+++++|+ +.+++.++++ .++ .|+. .+.
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~~-- 142 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFA-- 142 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCSS--
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEeccC--
Confidence 367999999999999999999999999999999 7887766532 112 2222 222
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEe
Q 035738 245 HCLKLLKNCYKSIPEDGKVIAVE 267 (333)
Q Consensus 245 ~~~~lL~~~~~~L~pgG~l~i~e 267 (333)
....+++++.+.|+|||++++..
T Consensus 143 ~~~~~l~~~~~~L~~gG~l~~~~ 165 (207)
T 1jsx_A 143 SLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp SHHHHHHHHTTSEEEEEEEEEEE
T ss_pred CHHHHHHHHHHhcCCCcEEEEEe
Confidence 23589999999999999999873
No 157
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=98.56 E-value=1.2e-07 Score=83.68 Aligned_cols=87 Identities=13% Similarity=0.148 Sum_probs=66.7
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hhHhhhCCCC---------CCe------------
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTK-YPYIKGINFDL-PHVIEHVPPH---------PCM------------ 235 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~---------~gv------------ 235 (333)
..++..++ ..+..+|||+|||+|.++..+++. .|..+++++|+ +.+++.++++ .++
T Consensus 89 ~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~ 167 (280)
T 1i9g_A 89 AQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL 167 (280)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred HHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC
Confidence 34555555 677889999999999999999986 57889999999 7776655321 111
Q ss_pred ------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738 236 ------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 236 ------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
.|+.+.++.. ++|+++.++|+|||++++..+
T Consensus 168 ~~~~~D~v~~~~~~~~--~~l~~~~~~L~pgG~l~~~~~ 204 (280)
T 1i9g_A 168 PDGSVDRAVLDMLAPW--EVLDAVSRLLVAGGVLMVYVA 204 (280)
T ss_dssp CTTCEEEEEEESSCGG--GGHHHHHHHEEEEEEEEEEES
T ss_pred CCCceeEEEECCcCHH--HHHHHHHHhCCCCCEEEEEeC
Confidence 4444555554 799999999999999999876
No 158
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=98.55 E-value=2.2e-08 Score=88.23 Aligned_cols=76 Identities=12% Similarity=0.134 Sum_probs=60.6
Q ss_pred CCCeEEEEcCCccH----HHHHHHHHCC----CCeEEEeec-hhHhhhCCCC----------------------------
Q 035738 190 NIKQLVDVGGGIGV----TLQAITTKYP----YIKGINFDL-PHVIEHVPPH---------------------------- 232 (333)
Q Consensus 190 ~~~~vlDVGgG~G~----~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~---------------------------- 232 (333)
+..+|+|+|||||. .++.+++..| +.++++.|+ +.+++.|++.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35799999999998 5666777655 468999999 8888765421
Q ss_pred ------------------------C--C-e------EEEccCChhHHHHHHHHHHHhCCCCcEEEE
Q 035738 233 ------------------------P--C-M------WILHDWNDEHCLKLLKNCYKSIPEDGKVIA 265 (333)
Q Consensus 233 ------------------------~--g-v------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i 265 (333)
+ + . ++|++++++...+++++++++|+|||.+++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 1 0 0 788889888778999999999999999987
No 159
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=98.54 E-value=4.8e-08 Score=87.48 Aligned_cols=78 Identities=15% Similarity=0.287 Sum_probs=61.5
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe--------------------EEEccCCh
Q 035738 191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM--------------------WILHDWND 243 (333)
Q Consensus 191 ~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv--------------------~vLh~~~~ 243 (333)
..+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++ +++ .|+.+..+
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 45999999999999999999999999999999 8899887653 122 34443321
Q ss_pred h-----H--HHHHHHHHHHhCCCCcEEEEEee
Q 035738 244 E-----H--CLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 244 ~-----~--~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
. . ..+++++++++|+|||.+++.-.
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 1 1 14799999999999999988765
No 160
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=98.54 E-value=2e-07 Score=77.29 Aligned_cols=82 Identities=9% Similarity=-0.030 Sum_probs=61.2
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe--------------------EEEcc-
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM--------------------WILHD- 240 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv--------------------~vLh~- 240 (333)
....+|||+|||+|.++..++.. +..+++++|+ +.+++.++++ .++ .|+.+
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence 35679999999999999987774 5568999999 8888877642 111 23322
Q ss_pred ---CChhHHHHHHHHHHH--hCCCCcEEEEEeeecC
Q 035738 241 ---WNDEHCLKLLKNCYK--SIPEDGKVIAVELMLP 271 (333)
Q Consensus 241 ---~~~~~~~~lL~~~~~--~L~pgG~l~i~e~~~~ 271 (333)
+..+...++++++.+ .|+|||++++......
T Consensus 122 p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~ 157 (189)
T 3p9n_A 122 PYNVDSADVDAILAALGTNGWTREGTVAVVERATTC 157 (189)
T ss_dssp CTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETTS
T ss_pred CCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCCC
Confidence 223556789999999 9999999999776443
No 161
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=98.53 E-value=1.8e-07 Score=76.64 Aligned_cols=82 Identities=10% Similarity=0.050 Sum_probs=59.8
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe-------------------EEEcc
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM-------------------WILHD 240 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv-------------------~vLh~ 240 (333)
.....+|||+|||+|.++..+++. +..+++++|+ +.+++.++++ .++ .|+.+
T Consensus 29 ~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~ 107 (177)
T 2esr_A 29 YFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLD 107 (177)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEEC
T ss_pred hcCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEEC
Confidence 346679999999999999999887 6679999999 8888776542 011 33333
Q ss_pred CC--hhHHHHHHHHHH--HhCCCCcEEEEEeeec
Q 035738 241 WN--DEHCLKLLKNCY--KSIPEDGKVIAVELML 270 (333)
Q Consensus 241 ~~--~~~~~~lL~~~~--~~L~pgG~l~i~e~~~ 270 (333)
.+ .....++++.+. +.|+|||.+++.....
T Consensus 108 ~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 108 PPYAKETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp CSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CCCCcchHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 22 233456777777 8999999999877644
No 162
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=98.52 E-value=5.2e-08 Score=83.71 Aligned_cols=81 Identities=10% Similarity=0.214 Sum_probs=62.7
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe---------------------EEEc
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM---------------------WILH 239 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv---------------------~vLh 239 (333)
.+..+|||||||+|..+..+++.+|..+++++|+ +.+++.++++ ..+ .|+.
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 132 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence 3567999999999999999999999999999999 7887766532 112 2333
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738 240 DWNDEHCLKLLKNCYKSIPEDGKVIAVELM 269 (333)
Q Consensus 240 ~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~ 269 (333)
+.+.+....+|+++.+.|+|||++++.+..
T Consensus 133 ~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~ 162 (233)
T 2gpy_A 133 DAAKGQYRRFFDMYSPMVRPGGLILSDNVL 162 (233)
T ss_dssp EGGGSCHHHHHHHHGGGEEEEEEEEEETTT
T ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEEEcCC
Confidence 333334468999999999999999887543
No 163
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=98.52 E-value=1.2e-07 Score=82.40 Aligned_cols=82 Identities=20% Similarity=0.184 Sum_probs=62.8
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC---C----Ce------------------------
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH---P----CM------------------------ 235 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~---~----gv------------------------ 235 (333)
.+..+|||||||+|..+..+++..| +.+++++|+ +.+++.++++ . .+
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 3567999999999999999999988 789999999 7888776542 1 11
Q ss_pred -EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 035738 236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELML 270 (333)
Q Consensus 236 -~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~ 270 (333)
.|+.+.+......+++++.+.|+|||.+++.+...
T Consensus 158 D~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~~~~ 193 (247)
T 1sui_A 158 DFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_dssp SEEEECSCSTTHHHHHHHHHHHBCTTCCEEEECTTG
T ss_pred EEEEEcCchHHHHHHHHHHHHhCCCCeEEEEecCCc
Confidence 23333333445689999999999999988766543
No 164
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=98.51 E-value=4.2e-08 Score=82.91 Aligned_cols=81 Identities=15% Similarity=0.185 Sum_probs=62.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC-------CC-----------------e-EEEccCC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH-------PC-----------------M-WILHDWN 242 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~g-----------------v-~vLh~~~ 242 (333)
+..+|||||||+|..+..+++..| +.+++++|+ +.+++.++++ .. . .|+.+.+
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 135 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDCD 135 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEETT
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcCC
Confidence 467999999999999999999988 789999999 8888776542 01 1 3333333
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 035738 243 DEHCLKLLKNCYKSIPEDGKVIAVELML 270 (333)
Q Consensus 243 ~~~~~~lL~~~~~~L~pgG~l~i~e~~~ 270 (333)
......+++++.+.|+|||.+++.+...
T Consensus 136 ~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 163 (210)
T 3c3p_A 136 VFNGADVLERMNRCLAKNALLIAVNALR 163 (210)
T ss_dssp TSCHHHHHHHHGGGEEEEEEEEEESSSS
T ss_pred hhhhHHHHHHHHHhcCCCeEEEEECccc
Confidence 4455689999999999999988866543
No 165
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=98.51 E-value=9.8e-08 Score=85.07 Aligned_cols=80 Identities=19% Similarity=0.294 Sum_probs=60.5
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----------CCe-------------------EE
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----------PCM-------------------WI 237 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~gv-------------------~v 237 (333)
.++.+|||||||+|..+..+++..+..+++++|+ +.+++.|+++ +.+ .|
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fDvI 161 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---CCCCCEEEE
T ss_pred CCCCEEEEEeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhhcCCCccEE
Confidence 3578999999999999999999878889999999 8888776532 111 44
Q ss_pred EccCChhHH-------HHHHHHHHHhCCCCcEEEEEee
Q 035738 238 LHDWNDEHC-------LKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 238 Lh~~~~~~~-------~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
+.+.+++.. .++++.++++|+|||++++...
T Consensus 162 i~D~~~p~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~ 199 (294)
T 3adn_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNG 199 (294)
T ss_dssp EECC----------CCHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EECCCCccCcchhccHHHHHHHHHHhcCCCCEEEEecC
Confidence 455443311 5799999999999999988754
No 166
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=98.50 E-value=8.4e-08 Score=82.02 Aligned_cols=83 Identities=16% Similarity=0.256 Sum_probs=63.4
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC-------CCe-----------------------
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH-------PCM----------------------- 235 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~gv----------------------- 235 (333)
..+..+|||||||+|..+..+++..| ..+++++|+ +.+++.++++ ..+
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 34567999999999999999999887 789999999 8887766532 111
Q ss_pred -EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 035738 236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELML 270 (333)
Q Consensus 236 -~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~ 270 (333)
.|+.+.+......+++++.+.|+|||.+++.+...
T Consensus 147 D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 182 (229)
T 2avd_A 147 DVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLW 182 (229)
T ss_dssp EEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred cEEEECCCHHHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence 22333334445689999999999999999877644
No 167
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=98.48 E-value=4.2e-08 Score=85.79 Aligned_cols=77 Identities=18% Similarity=0.211 Sum_probs=58.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------------C---C----e---EEEccC-Chh
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------------P---C----M---WILHDW-NDE 244 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------------~---g----v---~vLh~~-~~~ 244 (333)
+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++. + + | .+++++ ++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~- 130 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN- 130 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC-
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc-
Confidence 6679999999999999999887 468999999 7787765421 0 1 1 222333 44
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeeec
Q 035738 245 HCLKLLKNCYKSIPEDGKVIAVELML 270 (333)
Q Consensus 245 ~~~~lL~~~~~~L~pgG~l~i~e~~~ 270 (333)
..++|++++++|+|||++++..+..
T Consensus 131 -~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 131 -KDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp -HHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred -HHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 4689999999999999999987643
No 168
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=98.47 E-value=6.7e-09 Score=90.56 Aligned_cols=125 Identities=7% Similarity=0.038 Sum_probs=74.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CC-eEEE-----------------------
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PC-MWIL----------------------- 238 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~g-v~vL----------------------- 238 (333)
...+|||+|||+|.++..++.++|+.+++++|+ +.+++.|+++ .+ +.+.
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 567999999999999999999988899999999 8887766532 11 2111
Q ss_pred -cc---CC-h--------------hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCc
Q 035738 239 -HD---WN-D--------------EHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKE 299 (333)
Q Consensus 239 -h~---~~-~--------------~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~ 299 (333)
.+ +. . +....++.+++++|+|||.+.+++.+..... .......+ ... ..+..
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~------~~l~~~g~--~~~-~~~~~ 215 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSL------QLKKRLRW--YSC-MLGKK 215 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHH------HHGGGBSC--EEE-EESST
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHH------hcccceEE--EEE-CCCCh
Confidence 11 00 0 0112456677777778777776665332100 00000000 000 12334
Q ss_pred CCHHHHHHHHHhCCCCeeEEeecC
Q 035738 300 RTRHEFMTLATGAGFSGISCERAI 323 (333)
Q Consensus 300 rt~~e~~~ll~~aGf~~~~~~~~~ 323 (333)
.+.+++.++++++||+.+++....
T Consensus 216 ~~~~~~~~~l~~~Gf~~v~~~~~~ 239 (254)
T 2h00_A 216 CSLAPLKEELRIQGVPKVTYTEFC 239 (254)
T ss_dssp TSHHHHHHHHHHTTCSEEEEEEEE
T ss_pred hHHHHHHHHHHHcCCCceEEEEEe
Confidence 456899999999999999887664
No 169
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=98.45 E-value=3.7e-07 Score=78.71 Aligned_cols=83 Identities=14% Similarity=0.167 Sum_probs=63.3
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC---C---C-e-----------------------
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH---P---C-M----------------------- 235 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~---~---g-v----------------------- 235 (333)
..+..+|||||||+|..+..+++..| ..+++++|+ +.+++.++++ . + +
T Consensus 58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 137 (239)
T 2hnk_A 58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW 137 (239)
T ss_dssp HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence 34567999999999999999999988 689999999 7777666532 0 1 1
Q ss_pred ------------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 035738 236 ------------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELML 270 (333)
Q Consensus 236 ------------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~ 270 (333)
.|+.+...+....+|+++.+.|+|||++++.+...
T Consensus 138 ~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 184 (239)
T 2hnk_A 138 ASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADNVLW 184 (239)
T ss_dssp GTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred cccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEcccc
Confidence 22333344556689999999999999999876544
No 170
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=98.44 E-value=2.3e-07 Score=80.03 Aligned_cols=81 Identities=20% Similarity=0.160 Sum_probs=62.7
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC---CC----e------------------------
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH---PC----M------------------------ 235 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~---~g----v------------------------ 235 (333)
.+..+|||||||+|..+..+++..| +.+++++|+ +.+++.++++ .+ +
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 3567999999999999999999987 789999999 7887766542 11 1
Q ss_pred -EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738 236 -WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELM 269 (333)
Q Consensus 236 -~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~ 269 (333)
.|+.+.+......+++++.+.|+|||.+++.+..
T Consensus 149 D~I~~d~~~~~~~~~l~~~~~~L~pGG~lv~d~~~ 183 (237)
T 3c3y_A 149 DFGFVDADKPNYIKYHERLMKLVKVGGIVAYDNTL 183 (237)
T ss_dssp EEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECTT
T ss_pred CEEEECCchHHHHHHHHHHHHhcCCCeEEEEecCC
Confidence 3333444455678999999999999998775543
No 171
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=98.43 E-value=3.7e-08 Score=84.94 Aligned_cols=113 Identities=10% Similarity=-0.030 Sum_probs=81.7
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---CC--------------------e----EEEcc
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---PC--------------------M----WILHD 240 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~g--------------------v----~vLh~ 240 (333)
..+.+|||||||+|-++..+...+|..+++++|+ +.+++.++++ .| + .++|+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC 210 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence 4588999999999999999999999999999999 8888877653 11 1 55567
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEee--ecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCeeE
Q 035738 241 WNDEHCLKLLKNCYKSIPEDGKVIAVEL--MLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGIS 318 (333)
Q Consensus 241 ~~~~~~~~lL~~~~~~L~pgG~l~i~e~--~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 318 (333)
+.++.....+ ++.++|+|+|.++-.+. +....+ .++ ..-.+.|.+.+.+.|+. ++
T Consensus 211 Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs~----------gm~-----------~~Y~~~~e~~~~~~g~~-~~ 267 (281)
T 3lcv_B 211 LETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRSK----------GMF-----------QNYSQSFESQARERSCR-IQ 267 (281)
T ss_dssp HHHHSTTHHH-HHHHHSSCSEEEEEEECC-----------------CHH-----------HHHHHHHHHHHHHHTCC-EE
T ss_pred hhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCCc----------chh-----------hHHHHHHHHHHHhcCCc-ee
Confidence 7766655677 99999999999988887 322211 111 11266889999999984 44
Q ss_pred EeecCC
Q 035738 319 CERAIG 324 (333)
Q Consensus 319 ~~~~~~ 324 (333)
....++
T Consensus 268 ~~~~~n 273 (281)
T 3lcv_B 268 RLEIGN 273 (281)
T ss_dssp EEEETT
T ss_pred eeeecC
Confidence 444433
No 172
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=98.42 E-value=9.1e-08 Score=83.94 Aligned_cols=78 Identities=19% Similarity=0.254 Sum_probs=60.7
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-CCe------------------EEEccCChhHHHH
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-PCM------------------WILHDWNDEHCLK 248 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~gv------------------~vLh~~~~~~~~~ 248 (333)
....+|||||||+|.++..+++..|..+++++|+ +.+++.+++. +++ .|+.... ..
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~----~~ 159 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYA----PC 159 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESC----CC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCC----hh
Confidence 4567999999999999999999988889999999 7887766532 111 2332222 24
Q ss_pred HHHHHHHhCCCCcEEEEEeeec
Q 035738 249 LLKNCYKSIPEDGKVIAVELML 270 (333)
Q Consensus 249 lL~~~~~~L~pgG~l~i~e~~~ 270 (333)
.++++.++|+|||++++..+..
T Consensus 160 ~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 160 KAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp CHHHHHHHEEEEEEEEEEEECT
T ss_pred hHHHHHHhcCCCcEEEEEEcCH
Confidence 6899999999999999998754
No 173
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=98.40 E-value=7.4e-07 Score=72.27 Aligned_cols=90 Identities=19% Similarity=0.096 Sum_probs=60.5
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeechhHhhhCCC---------CC-----------C-e-E
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDLPHVIEHVPP---------HP-----------C-M-W 236 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~---------~~-----------g-v-~ 236 (333)
.++..+....+..+|||+|||+|.++..+++.+ |+.+++++|+..+++..+- .+ + . .
T Consensus 12 ~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~ 91 (180)
T 1ej0_A 12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSKVQV 91 (180)
T ss_dssp HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccccCcEEEEEcccccchhhhhhhccCCCCceeE
Confidence 444444435567899999999999999999985 7789999998334332110 00 0 1 1
Q ss_pred E-----EccCChh---H------HHHHHHHHHHhCCCCcEEEEEeee
Q 035738 237 I-----LHDWNDE---H------CLKLLKNCYKSIPEDGKVIAVELM 269 (333)
Q Consensus 237 v-----Lh~~~~~---~------~~~lL~~~~~~L~pgG~l~i~e~~ 269 (333)
| +|..... . ..++++++.+.|+|||.+++.+..
T Consensus 92 i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (180)
T 1ej0_A 92 VMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp EEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred EEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 2 2222222 1 158999999999999999987763
No 174
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=98.40 E-value=7.3e-07 Score=74.05 Aligned_cols=88 Identities=24% Similarity=0.271 Sum_probs=58.9
Q ss_pred HHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCC---------CeEEEeechhHh--hhC----CCC-------------
Q 035738 181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPY---------IKGINFDLPHVI--EHV----PPH------------- 232 (333)
Q Consensus 181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~---------~~~~~~D~~~~~--~~a----~~~------------- 232 (333)
+...+..+.+..+|||||||+|.++..++++++. .+++++|+..+. +.+ ...
T Consensus 13 l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 92 (196)
T 2nyu_A 13 VNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEV 92 (196)
T ss_dssp HHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCCCTTCEEECSCCTTSHHHHHHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcccCCCCeEEEeccCCCHHHHHHHHHh
Confidence 3344443556789999999999999999999875 799999984322 111 110
Q ss_pred -C--Ce-EEEccC---------ChhH-----HHHHHHHHHHhCCCCcEEEEEee
Q 035738 233 -P--CM-WILHDW---------NDEH-----CLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 233 -~--gv-~vLh~~---------~~~~-----~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
+ .+ .|+.+. .+.. ...+++++.++|+|||++++...
T Consensus 93 ~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 93 LPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp SGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 0 11 333211 1111 14789999999999999998765
No 175
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=98.40 E-value=2.5e-07 Score=77.96 Aligned_cols=79 Identities=8% Similarity=0.047 Sum_probs=58.9
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe-----------------
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM----------------- 235 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv----------------- 235 (333)
.++..+. ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.++++ +++
T Consensus 68 ~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (210)
T 3lbf_A 68 RMTELLE-LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPF 144 (210)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred HHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCc
Confidence 3444454 667889999999999999999998 578999999 8888776542 122
Q ss_pred ------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738 236 ------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELM 269 (333)
Q Consensus 236 ------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~ 269 (333)
..+|+++ .++.+.|+|||++++.-..
T Consensus 145 D~i~~~~~~~~~~--------~~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 145 DAIIVTAAPPEIP--------TALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp EEEEESSBCSSCC--------THHHHTEEEEEEEEEEECS
T ss_pred cEEEEccchhhhh--------HHHHHhcccCcEEEEEEcC
Confidence 2334444 3578999999999997764
No 176
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=98.39 E-value=3.2e-07 Score=78.07 Aligned_cols=80 Identities=10% Similarity=0.177 Sum_probs=58.0
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC------C-Ce------------------------
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH------P-CM------------------------ 235 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~-gv------------------------ 235 (333)
.+..+|||||||+|..+..+++..+ +.+++++|+ +.+++.++++ . .+
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD 136 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 136 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence 3568999999999999999999875 789999999 8888776642 0 11
Q ss_pred EEEccCChhH---HHHHHHHHHHhCCCCcEEEEEeee
Q 035738 236 WILHDWNDEH---CLKLLKNCYKSIPEDGKVIAVELM 269 (333)
Q Consensus 236 ~vLh~~~~~~---~~~lL~~~~~~L~pgG~l~i~e~~ 269 (333)
.|+.+..... ..++++.+ +.|+|||++++.+..
T Consensus 137 ~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 137 MVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp EEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred EEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCC
Confidence 3333332222 22567777 999999998876654
No 177
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=98.39 E-value=7.3e-07 Score=76.97 Aligned_cols=85 Identities=15% Similarity=0.156 Sum_probs=64.2
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe----------------
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM---------------- 235 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv---------------- 235 (333)
.++..++ .....+|||+|||+|.++..+++. ..+++++|+ +.+++.++++ +++
T Consensus 82 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 158 (248)
T 2yvl_A 82 YIALKLN-LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGI 158 (248)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTC
T ss_pred HHHHhcC-CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCc
Confidence 4445454 667789999999999999999998 678999998 7777665431 111
Q ss_pred --EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738 236 --WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELM 269 (333)
Q Consensus 236 --~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~ 269 (333)
.++.+.++.. .+++++.+.|+|||++++..+.
T Consensus 159 ~D~v~~~~~~~~--~~l~~~~~~L~~gG~l~~~~~~ 192 (248)
T 2yvl_A 159 FHAAFVDVREPW--HYLEKVHKSLMEGAPVGFLLPT 192 (248)
T ss_dssp BSEEEECSSCGG--GGHHHHHHHBCTTCEEEEEESS
T ss_pred ccEEEECCcCHH--HHHHHHHHHcCCCCEEEEEeCC
Confidence 3444444443 7899999999999999998863
No 178
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=98.39 E-value=7.3e-07 Score=74.24 Aligned_cols=89 Identities=17% Similarity=0.234 Sum_probs=59.1
Q ss_pred HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhh--C-------CCCC---------------
Q 035738 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEH--V-------PPHP--------------- 233 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~--a-------~~~~--------------- 233 (333)
..++.+.+..+.+..+|||+|||+|.++..++++ ..+++++|+..+... . ...+
T Consensus 13 L~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 90 (191)
T 3dou_A 13 LEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEMEEIAGVRFIRCDIFKETIFDDIDRALREEGIE 90 (191)
T ss_dssp HHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCCCCTTCEEEECCTTSSSHHHHHHHHHHHHTCS
T ss_pred HHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccccCCCeEEEEccccCHHHHHHHHHHhhcccCC
Confidence 3455666654567889999999999999999887 678999998332110 0 0000
Q ss_pred Ce-EEEccCC---------h-----hHHHHHHHHHHHhCCCCcEEEEEee
Q 035738 234 CM-WILHDWN---------D-----EHCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 234 gv-~vLh~~~---------~-----~~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
.+ .|+.+.+ + +.+..+|+.+.+.|+|||++++...
T Consensus 91 ~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 91 KVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp SEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 12 3333321 0 1135788999999999999987665
No 179
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=98.39 E-value=2.1e-07 Score=79.97 Aligned_cols=82 Identities=15% Similarity=0.163 Sum_probs=63.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC-------C----------------------C-e-E
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH-------P----------------------C-M-W 236 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~----------------------g-v-~ 236 (333)
+..+|||||||+|..+..+++..| +.+++++|+ +.+++.++++ . + . .
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 467999999999999999999987 789999999 7777766532 0 1 1 3
Q ss_pred EEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 035738 237 ILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLP 271 (333)
Q Consensus 237 vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~ 271 (333)
|+.+.+......+++++.+.|+|||.+++.+....
T Consensus 152 V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 186 (232)
T 3cbg_A 152 IFIDADKRNYPRYYEIGLNLLRRGGLMVIDNVLWH 186 (232)
T ss_dssp EEECSCGGGHHHHHHHHHHTEEEEEEEEEECTTGG
T ss_pred EEECCCHHHHHHHHHHHHHHcCCCeEEEEeCCCcC
Confidence 33344445567899999999999999988776543
No 180
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=98.39 E-value=9.1e-07 Score=73.84 Aligned_cols=45 Identities=22% Similarity=0.140 Sum_probs=36.6
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCC--CCeEEEeechh
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYP--YIKGINFDLPH 224 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p--~~~~~~~D~~~ 224 (333)
.+.+.+..+.+..+|||||||+|.++..+++++| ..+++++|+..
T Consensus 12 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~ 58 (201)
T 2plw_A 12 ELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKI 58 (201)
T ss_dssp HHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSC
T ss_pred HHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCc
Confidence 3444554346678999999999999999999998 68999999943
No 181
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=98.38 E-value=2.6e-07 Score=78.12 Aligned_cols=80 Identities=10% Similarity=0.092 Sum_probs=59.7
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCCCC------CCe----------------
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVPPH------PCM---------------- 235 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~gv---------------- 235 (333)
.++..+. ..+..+|||||||+|.++..+++.. |+.+++++|+ +.+++.+++. .++
T Consensus 68 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 146 (215)
T 2yxe_A 68 MMCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAP 146 (215)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCC
T ss_pred HHHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCC
Confidence 3444444 6677899999999999999999987 6689999999 7787766532 111
Q ss_pred -------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738 236 -------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 236 -------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
.++|+++ +++.+.|+|||++++...
T Consensus 147 fD~v~~~~~~~~~~--------~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 147 YDRIYTTAAGPKIP--------EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp EEEEEESSBBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred eeEEEECCchHHHH--------HHHHHHcCCCcEEEEEEC
Confidence 2333333 578899999999999865
No 182
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=98.37 E-value=1.7e-07 Score=83.60 Aligned_cols=77 Identities=30% Similarity=0.403 Sum_probs=58.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------CCe-------------------EEEc
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------PCM-------------------WILH 239 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~gv-------------------~vLh 239 (333)
.+.+|||||||+|..+..+++..|..+++++|+ +.+++.++++ +++ .|+.
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 457999999999999999999888889999999 7887765432 122 4444
Q ss_pred cCChh--------HHHHHHHHHHHhCCCCcEEEEE
Q 035738 240 DWNDE--------HCLKLLKNCYKSIPEDGKVIAV 266 (333)
Q Consensus 240 ~~~~~--------~~~~lL~~~~~~L~pgG~l~i~ 266 (333)
+.+++ ...++++++++.|+|||.+++.
T Consensus 170 d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 204 (296)
T 1inl_A 170 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 204 (296)
T ss_dssp EC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 44433 1258999999999999999886
No 183
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=98.35 E-value=2.7e-06 Score=69.47 Aligned_cols=105 Identities=9% Similarity=0.000 Sum_probs=68.7
Q ss_pred CCCCCeEEEEcCCccH------HHHHHHHHCC-CCeEEEeechhHhhh--CCCCCCe----EEEccC-ChhHHHHHHHHH
Q 035738 188 FDNIKQLVDVGGGIGV------TLQAITTKYP-YIKGINFDLPHVIEH--VPPHPCM----WILHDW-NDEHCLKLLKNC 253 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~------~~~~l~~~~p-~~~~~~~D~~~~~~~--a~~~~gv----~vLh~~-~~~~~~~lL~~~ 253 (333)
...+.+|||||||... +.....++.+ ++++...|....-.. ....-++ .+||++ ++. .++|+++
T Consensus 10 ~~~g~~vL~~~~g~v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~--~~~l~~~ 87 (176)
T 2ld4_A 10 ISAGQFVAVVWDKSSPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVPGSTTLHS--AEILAEI 87 (176)
T ss_dssp CCTTSEEEEEECTTSCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTCCCCCC--HHHHHHH
T ss_pred CCCCCEEEEecCCceeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChhhhcccCH--HHHHHHH
Confidence 5678999999999753 1122233343 477777777433221 1111122 677887 555 4899999
Q ss_pred HHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCC
Q 035738 254 YKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGF 314 (333)
Q Consensus 254 ~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf 314 (333)
+++|||||++++.++...... .....++.++|.++|+++||
T Consensus 88 ~r~LkpgG~l~~~~~~~~~~~--------------------~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 88 ARILRPGGCLFLKEPVETAVD--------------------NNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp HHHEEEEEEEEEEEEEESSSC--------------------SSSSSCCHHHHHHHHHHTTC
T ss_pred HHHCCCCEEEEEEcccccccc--------------------cccccCCHHHHHHHHHHCCC
Confidence 999999999999766433210 01223578999999999999
No 184
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=98.35 E-value=4.3e-07 Score=74.76 Aligned_cols=82 Identities=10% Similarity=0.060 Sum_probs=57.2
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe----------------------EE
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM----------------------WI 237 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv----------------------~v 237 (333)
.....+|||+|||+|.++..+++ .+..+++++|+ +.+++.++++ +++ .|
T Consensus 42 ~~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i 120 (187)
T 2fhp_A 42 YFDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLV 120 (187)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hcCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEE
Confidence 34667999999999999999887 56679999999 8888776542 111 23
Q ss_pred EccCC--hhHHHHHHHHH--HHhCCCCcEEEEEeeec
Q 035738 238 LHDWN--DEHCLKLLKNC--YKSIPEDGKVIAVELML 270 (333)
Q Consensus 238 Lh~~~--~~~~~~lL~~~--~~~L~pgG~l~i~e~~~ 270 (333)
+.+.+ ......+++.+ .+.|+|||.+++.....
T Consensus 121 ~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 121 LLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp EECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred EECCCCCchhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 33222 12223566666 78899999998876543
No 185
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=98.35 E-value=7.1e-07 Score=81.21 Aligned_cols=82 Identities=17% Similarity=0.161 Sum_probs=57.4
Q ss_pred HHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC-------CCe------------------
Q 035738 181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH-------PCM------------------ 235 (333)
Q Consensus 181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~gv------------------ 235 (333)
+...+. ..+..+|||||||+|.++..++++ +..+++++|+..+++.+++. .++
T Consensus 56 i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 133 (340)
T 2fyt_A 56 IYQNPH-IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVD 133 (340)
T ss_dssp HHHCGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEE
T ss_pred HHhhhh-hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEE
Confidence 334333 556789999999999999998887 45689999995477665431 111
Q ss_pred EEEcc-----C-ChhHHHHHHHHHHHhCCCCcEEE
Q 035738 236 WILHD-----W-NDEHCLKLLKNCYKSIPEDGKVI 264 (333)
Q Consensus 236 ~vLh~-----~-~~~~~~~lL~~~~~~L~pgG~l~ 264 (333)
.|+.. + .......+|+++.+.|+|||+++
T Consensus 134 ~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 134 VIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp EEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 22211 1 23344589999999999999987
No 186
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=98.35 E-value=1.1e-06 Score=80.52 Aligned_cols=90 Identities=17% Similarity=0.155 Sum_probs=66.9
Q ss_pred HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCCCC---CC---e--------------
Q 035738 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVPPH---PC---M-------------- 235 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~---~g---v-------------- 235 (333)
+..++.... +.+..+|||+|||+|.++..++... |+.+++++|+ +.+++.|+++ .+ +
T Consensus 192 a~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~ 270 (354)
T 3tma_A 192 AQALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFF 270 (354)
T ss_dssp HHHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTC
T ss_pred HHHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcccc
Confidence 344445444 7778899999999999999999988 8999999999 8888877643 11 1
Q ss_pred ----EEEccCC-------hhH----HHHHHHHHHHhCCCCcEEEEEee
Q 035738 236 ----WILHDWN-------DEH----CLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 236 ----~vLh~~~-------~~~----~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
.|+.+.| ... ..++++++.+.|+|||+++++..
T Consensus 271 ~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 271 PEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp CCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred CCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 3333322 111 25789999999999999998754
No 187
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=98.34 E-value=1.2e-06 Score=78.91 Aligned_cols=82 Identities=12% Similarity=0.073 Sum_probs=61.2
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC------CCe------------------EEEcc-
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH------PCM------------------WILHD- 240 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~gv------------------~vLh~- 240 (333)
..+..+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++++ .++ .|+.+
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~ 195 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 195 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence 66778999999999999999999875 589999999 7777765532 111 33332
Q ss_pred -----------------CChhH-------HHHHHHHHHHhCCCCcEEEEEeee
Q 035738 241 -----------------WNDEH-------CLKLLKNCYKSIPEDGKVIAVELM 269 (333)
Q Consensus 241 -----------------~~~~~-------~~~lL~~~~~~L~pgG~l~i~e~~ 269 (333)
|+.++ ..++|+++.+.|+|||++++....
T Consensus 196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs 248 (315)
T 1ixk_A 196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 248 (315)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 22221 148999999999999999887653
No 188
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=98.34 E-value=2.8e-07 Score=82.94 Aligned_cols=80 Identities=20% Similarity=0.276 Sum_probs=60.7
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----------CCe-------------------EE
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----------PCM-------------------WI 237 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~gv-------------------~v 237 (333)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.++++ +.+ .|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 3568999999999999999999888889999999 7887765431 122 33
Q ss_pred EccCChhH----------HHHHHHHHHHhCCCCcEEEEEee
Q 035738 238 LHDWNDEH----------CLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 238 Lh~~~~~~----------~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
+.+.+++. ..+++++++++|+|||.+++...
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 196 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence 33332221 35899999999999999998753
No 189
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=98.33 E-value=6.5e-07 Score=77.68 Aligned_cols=50 Identities=22% Similarity=0.147 Sum_probs=38.5
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHH--CCCCeEEEeec-hhHhhhCC
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTK--YPYIKGINFDL-PHVIEHVP 230 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~ 230 (333)
.+++.+. .....+|||+|||+|.++..+++. ++..+++++|+ +.+++.|+
T Consensus 42 ~~l~~~~-~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~ 94 (250)
T 1o9g_A 42 RALARLP-GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAA 94 (250)
T ss_dssp HHHHTSS-CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHH
T ss_pred HHHHhcc-cCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHH
Confidence 3344333 335679999999999999999998 78889999999 77765443
No 190
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=98.32 E-value=1.9e-07 Score=85.27 Aligned_cols=86 Identities=16% Similarity=0.072 Sum_probs=61.5
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC-------CCe-----------------
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH-------PCM----------------- 235 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~gv----------------- 235 (333)
.+...+. ..+..+|||||||+|.++..++++ +..+++++|+..+++.+++. ..+
T Consensus 41 ~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D 118 (348)
T 2y1w_A 41 AILQNHT-DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVD 118 (348)
T ss_dssp HHHHTGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEE
T ss_pred HHHhccc-cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCcee
Confidence 3445444 456789999999999999988875 56799999995566554321 111
Q ss_pred -----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 035738 236 -----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVE 267 (333)
Q Consensus 236 -----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e 267 (333)
.+++++..+.....+.++++.|+|||++++.-
T Consensus 119 ~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 119 IIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp EEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred EEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence 24455555666788889999999999998543
No 191
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=98.32 E-value=3.3e-07 Score=87.17 Aligned_cols=86 Identities=16% Similarity=0.083 Sum_probs=61.7
Q ss_pred HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC-------CCe---------------
Q 035738 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH-------PCM--------------- 235 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~gv--------------- 235 (333)
...+++.+. ..+..+|||||||+|.++..+++ .+..+++++|++.+++.|++. ..+
T Consensus 147 ~~~il~~l~-~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~ 224 (480)
T 3b3j_A 147 QRAILQNHT-DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 224 (480)
T ss_dssp HHHHHHTGG-GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHHHhhh-hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCC
Confidence 344555554 45678999999999999998877 677899999995576655431 111
Q ss_pred --E-----EEccCChhHHHHHHHHHHHhCCCCcEEEE
Q 035738 236 --W-----ILHDWNDEHCLKLLKNCYKSIPEDGKVIA 265 (333)
Q Consensus 236 --~-----vLh~~~~~~~~~lL~~~~~~L~pgG~l~i 265 (333)
. +++.+.++.....+.++++.|+|||++++
T Consensus 225 fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 225 VDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp EEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred eEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 2 22334446667788899999999999885
No 192
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=98.32 E-value=2.8e-07 Score=81.35 Aligned_cols=78 Identities=26% Similarity=0.307 Sum_probs=60.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------CCe-------------------EEEc
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------PCM-------------------WILH 239 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~gv-------------------~vLh 239 (333)
++.+|||||||+|..+..+++..+..+++++|+ |.+++.++++ +.+ .|+.
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 568999999999999999998878889999999 8888876532 222 3444
Q ss_pred cCChhH-------HHHHHHHHHHhCCCCcEEEEEe
Q 035738 240 DWNDEH-------CLKLLKNCYKSIPEDGKVIAVE 267 (333)
Q Consensus 240 ~~~~~~-------~~~lL~~~~~~L~pgG~l~i~e 267 (333)
+.+++. ..+++++++++|+|||.+++..
T Consensus 155 d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 443321 1479999999999999988863
No 193
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=98.31 E-value=7.9e-07 Score=77.84 Aligned_cols=75 Identities=12% Similarity=0.073 Sum_probs=60.8
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------CCe---------------EEEccCC
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------PCM---------------WILHDWN 242 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~gv---------------~vLh~~~ 242 (333)
.++.+|||||||+|..+..+++. + .+++++|+ +.+++.|+++ +.+ .|+.+.+
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d~~ 148 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCLQE 148 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEESSC
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEECCC
Confidence 35689999999999999999988 7 89999999 8999988764 122 3444555
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEe
Q 035738 243 DEHCLKLLKNCYKSIPEDGKVIAVE 267 (333)
Q Consensus 243 ~~~~~~lL~~~~~~L~pgG~l~i~e 267 (333)
++. ..++++++.|+|||.+++..
T Consensus 149 dp~--~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 149 PDI--HRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp CCH--HHHHHHHTTEEEEEEEEEEE
T ss_pred ChH--HHHHHHHHhcCCCcEEEEEc
Confidence 554 58999999999999998863
No 194
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=98.31 E-value=4.8e-07 Score=83.05 Aligned_cols=79 Identities=10% Similarity=0.116 Sum_probs=56.4
Q ss_pred CCCCeEEEEcCC------ccHHHHHHHHH-CCCCeEEEeec-hhHhhhCCCC------------C-------C-e-EE--
Q 035738 189 DNIKQLVDVGGG------IGVTLQAITTK-YPYIKGINFDL-PHVIEHVPPH------------P-------C-M-WI-- 237 (333)
Q Consensus 189 ~~~~~vlDVGgG------~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~------------~-------g-v-~v-- 237 (333)
.+..+||||||| +|..+..++++ +|+.+++++|+ +.+.....+. . + . .|
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVis 294 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHVDELRIRTIQGDQNDAEFLDRIARRYGPFDIVID 294 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGGCBTTEEEEECCTTCHHHHHHHHHHHCCEEEEEE
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhhcCCCcEEEEecccccchhhhhhcccCCccEEEE
Confidence 356899999999 77777777665 69999999999 6664321110 0 0 0 22
Q ss_pred --EccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738 238 --LHDWNDEHCLKLLKNCYKSIPEDGKVIAVELM 269 (333)
Q Consensus 238 --Lh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~ 269 (333)
.|.+ ++..+.|+++++.|||||+++|.|..
T Consensus 295 dgsH~~--~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 295 DGSHIN--AHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp CSCCCH--HHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred CCcccc--hhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 2333 34468999999999999999999875
No 195
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=98.30 E-value=5.3e-07 Score=81.26 Aligned_cols=81 Identities=14% Similarity=0.208 Sum_probs=60.2
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC------CCe----------------
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH------PCM---------------- 235 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~gv---------------- 235 (333)
.++..+. ..+..+|||||||+|.++..+++..+ +.+++++|+ +.+++.++++ +++
T Consensus 66 ~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~ 144 (317)
T 1dl5_A 66 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSP 144 (317)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCC
Confidence 4444454 66778999999999999999999887 488999999 7888776542 122
Q ss_pred -------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738 236 -------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELM 269 (333)
Q Consensus 236 -------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~ 269 (333)
.++|+++ +++.+.|+|||++++....
T Consensus 145 fD~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 145 YDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp EEEEEECSBBSCCC--------HHHHHHEEEEEEEEEEBCB
T ss_pred eEEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEECC
Confidence 2223322 5778899999999998643
No 196
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=98.30 E-value=4.9e-07 Score=80.93 Aligned_cols=80 Identities=18% Similarity=0.223 Sum_probs=60.5
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------CCe-------------------EEE
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------PCM-------------------WIL 238 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~gv-------------------~vL 238 (333)
.++.+|||||||+|..+..++++.|..+++++|+ +.+++.++++ +.+ .|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 4568999999999999999999888899999999 8888766532 122 344
Q ss_pred ccCChh-------HHHHHHHHHHHhCCCCcEEEEEee
Q 035738 239 HDWNDE-------HCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 239 h~~~~~-------~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
.+.++. ...+++++++++|+|||.+++...
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 210 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE 210 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecC
Confidence 344432 124689999999999999988664
No 197
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=98.29 E-value=4.4e-07 Score=77.99 Aligned_cols=86 Identities=16% Similarity=0.184 Sum_probs=61.0
Q ss_pred HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe---------------
Q 035738 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM--------------- 235 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv--------------- 235 (333)
...+++.++ ..+..+|||||||+|.++..+++..+ .+++++|+ +.+++.++++ .++
T Consensus 80 ~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (235)
T 1jg1_A 80 VAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA 157 (235)
T ss_dssp HHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCC
Confidence 344555555 66778999999999999999999988 88999998 7887776542 122
Q ss_pred ---EEEccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738 236 ---WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 236 ---~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
.|+....- ..+.+++.+.|+|||++++.-.
T Consensus 158 ~fD~Ii~~~~~---~~~~~~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 158 PYDVIIVTAGA---PKIPEPLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp CEEEEEECSBB---SSCCHHHHHTEEEEEEEEEEEC
T ss_pred CccEEEECCcH---HHHHHHHHHhcCCCcEEEEEEe
Confidence 11111110 1234578899999999998765
No 198
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=98.28 E-value=7.5e-07 Score=76.11 Aligned_cols=80 Identities=14% Similarity=0.164 Sum_probs=59.1
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----CCe------------------
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----PCM------------------ 235 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~gv------------------ 235 (333)
..+++.+. ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. .++
T Consensus 60 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD 136 (231)
T 1vbf_A 60 IFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD 136 (231)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred HHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCcc
Confidence 34555554 6677899999999999999999987 68999999 7777766432 011
Q ss_pred -----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738 236 -----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELM 269 (333)
Q Consensus 236 -----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~ 269 (333)
.++|+++ .++.+.|+|||++++....
T Consensus 137 ~v~~~~~~~~~~--------~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 137 RVVVWATAPTLL--------CKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp EEEESSBBSSCC--------HHHHHTEEEEEEEEEEECS
T ss_pred EEEECCcHHHHH--------HHHHHHcCCCcEEEEEEcC
Confidence 3334333 4688999999999998753
No 199
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=98.27 E-value=4.4e-07 Score=82.29 Aligned_cols=79 Identities=16% Similarity=0.246 Sum_probs=60.3
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------CCe--------------------E
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------PCM--------------------W 236 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~gv--------------------~ 236 (333)
..++.+|||||||+|..+..+++..|..+++++|+ +.+++.|+++ +.+ .
T Consensus 118 ~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDl 197 (334)
T 1xj5_A 118 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 197 (334)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccE
Confidence 34668999999999999999999888899999999 8888766532 112 3
Q ss_pred EEccCCh----hH---HHHHHHHHHHhCCCCcEEEEE
Q 035738 237 ILHDWND----EH---CLKLLKNCYKSIPEDGKVIAV 266 (333)
Q Consensus 237 vLh~~~~----~~---~~~lL~~~~~~L~pgG~l~i~ 266 (333)
|+.+.++ .. ..+++++++++|+|||++++.
T Consensus 198 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 198 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 3333321 11 358999999999999999886
No 200
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=98.26 E-value=7.5e-07 Score=77.92 Aligned_cols=43 Identities=16% Similarity=0.251 Sum_probs=37.6
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCC
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVP 230 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~ 230 (333)
..+..+|||+|||+|..+..+++++|..+++++|+ +.+++.++
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~ 77 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFAR 77 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHH
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHH
Confidence 55678999999999999999999999999999999 77776543
No 201
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=98.26 E-value=1.9e-06 Score=76.39 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=37.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP 231 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 231 (333)
...+|||+|||+|..+..+++. |+.+++++|+ +.+++.+++
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~ 164 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARK 164 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHH
Confidence 4568999999999999999999 9999999999 888887764
No 202
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=98.25 E-value=4.5e-07 Score=79.89 Aligned_cols=83 Identities=12% Similarity=0.133 Sum_probs=65.2
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe-----------------EEEccCCh
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM-----------------WILHDWND 243 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv-----------------~vLh~~~~ 243 (333)
+.+..+|||+|||+|.++..+++..+..+++++|+ |.+++.++++ .++ .|+.+.+.
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH 196 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence 55678999999999999999999998889999999 8888877642 122 33333332
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 035738 244 EHCLKLLKNCYKSIPEDGKVIAVELMLP 271 (333)
Q Consensus 244 ~~~~~lL~~~~~~L~pgG~l~i~e~~~~ 271 (333)
...++++++.+.|+|||++++.+....
T Consensus 197 -~~~~~l~~~~~~LkpgG~l~~s~~~~~ 223 (272)
T 3a27_A 197 -KTHKFLDKTFEFLKDRGVIHYHETVAE 223 (272)
T ss_dssp -SGGGGHHHHHHHEEEEEEEEEEEEEEG
T ss_pred -cHHHHHHHHHHHcCCCCEEEEEEcCcc
Confidence 345789999999999999998887543
No 203
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=98.22 E-value=7.6e-07 Score=80.03 Aligned_cols=78 Identities=21% Similarity=0.267 Sum_probs=58.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------CCe-------------------EEEc
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------PCM-------------------WILH 239 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~gv-------------------~vLh 239 (333)
++.+|||||||+|..+..+++..|..+++++|+ +.+++.|+++ +.+ .|+.
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 187 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 187 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence 567999999999999999999888899999999 8888766532 112 3443
Q ss_pred cCChh----HH---HHHHHHHHHhCCCCcEEEEEe
Q 035738 240 DWNDE----HC---LKLLKNCYKSIPEDGKVIAVE 267 (333)
Q Consensus 240 ~~~~~----~~---~~lL~~~~~~L~pgG~l~i~e 267 (333)
+.+++ .. .+++++++++|+|||.+++..
T Consensus 188 d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 188 DSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp CCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred cCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 43321 11 589999999999999998865
No 204
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=98.22 E-value=6.7e-07 Score=79.24 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=59.8
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------CCe-------------------EEE
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------PCM-------------------WIL 238 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~gv-------------------~vL 238 (333)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.++++ +++ .|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 4568999999999999999998888889999999 8888766532 122 333
Q ss_pred ccCCh----hHH---HHHHHHHHHhCCCCcEEEEEe
Q 035738 239 HDWND----EHC---LKLLKNCYKSIPEDGKVIAVE 267 (333)
Q Consensus 239 h~~~~----~~~---~~lL~~~~~~L~pgG~l~i~e 267 (333)
.+.++ ... .+++++++++|+|||.+++..
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 33221 111 589999999999999998763
No 205
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=98.22 E-value=1.2e-06 Score=77.42 Aligned_cols=77 Identities=19% Similarity=0.283 Sum_probs=57.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC----------------CCCe-----------------
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP----------------HPCM----------------- 235 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------~~gv----------------- 235 (333)
.+.+|||||||+|..+..+++. |..+++++|+ |.+++.+++ .+++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~f 153 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 153 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCCe
Confidence 5689999999999999999998 8889999999 788776542 1222
Q ss_pred -EEEccCCh-----hH--HHHHHHHHHHhCCCCcEEEEEe
Q 035738 236 -WILHDWND-----EH--CLKLLKNCYKSIPEDGKVIAVE 267 (333)
Q Consensus 236 -~vLh~~~~-----~~--~~~lL~~~~~~L~pgG~l~i~e 267 (333)
.|+.+.++ .. ..++++++++.|+|||.+++..
T Consensus 154 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 154 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 33334332 11 2578999999999999998864
No 206
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=98.21 E-value=9.5e-07 Score=81.51 Aligned_cols=81 Identities=12% Similarity=0.015 Sum_probs=58.9
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC------CC-e-----------------EE-----E
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH------PC-M-----------------WI-----L 238 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~------~g-v-----------------~v-----L 238 (333)
..+..+|||||||+|.++..++++. ..+++++|+..+++.++++ .+ + .| .
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG 139 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence 5567899999999999999999873 3489999997766665432 11 1 11 2
Q ss_pred ccCC-hhHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738 239 HDWN-DEHCLKLLKNCYKSIPEDGKVIAVELM 269 (333)
Q Consensus 239 h~~~-~~~~~~lL~~~~~~L~pgG~l~i~e~~ 269 (333)
|... +.....+++++.+.|+|||.+++.+..
T Consensus 140 ~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~ 171 (376)
T 3r0q_C 140 YFLLRESMFDSVISARDRWLKPTGVMYPSHAR 171 (376)
T ss_dssp TTBTTTCTHHHHHHHHHHHEEEEEEEESSEEE
T ss_pred hcccchHHHHHHHHHHHhhCCCCeEEEEecCe
Confidence 3332 233557999999999999999876654
No 207
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=98.21 E-value=6.4e-07 Score=82.69 Aligned_cols=77 Identities=12% Similarity=0.087 Sum_probs=59.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---C--Ce------------------EE-----Ecc
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---P--CM------------------WI-----LHD 240 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~--gv------------------~v-----Lh~ 240 (333)
...+|||+|||+|.++..+++. +.+++++|+ +.+++.++++ . .+ .| +|.
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 5679999999999999999987 468999999 7888776542 0 01 22 232
Q ss_pred ---CChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738 241 ---WNDEHCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 241 ---~~~~~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
...+...++++++.+.|+|||+++|+..
T Consensus 311 ~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n 341 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRPGGVFFLVSN 341 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cccccHHHHHHHHHHHHHhcCcCcEEEEEEc
Confidence 2245567899999999999999999754
No 208
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=98.21 E-value=7.3e-07 Score=72.17 Aligned_cols=78 Identities=8% Similarity=0.026 Sum_probs=55.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---C--C---------------------e-EEEcc-
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---P--C---------------------M-WILHD- 240 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~--g---------------------v-~vLh~- 240 (333)
...+|||+|||+|.++..+++..++ ++++|+ +.+++.++++ . + . .|+.+
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 5679999999999999999998776 999999 7888776531 0 1 1 22322
Q ss_pred -CChhHHHHHHHHHH--HhCCCCcEEEEEeeec
Q 035738 241 -WNDEHCLKLLKNCY--KSIPEDGKVIAVELML 270 (333)
Q Consensus 241 -~~~~~~~~lL~~~~--~~L~pgG~l~i~e~~~ 270 (333)
+. ....++++.+. +.|+|||++++.....
T Consensus 119 ~~~-~~~~~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 119 PYA-MDLAALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp CTT-SCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred CCc-hhHHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence 21 11225566666 9999999998876643
No 209
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=98.20 E-value=6.8e-07 Score=80.67 Aligned_cols=78 Identities=21% Similarity=0.220 Sum_probs=59.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------CCe-------------------EEEc
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------PCM-------------------WILH 239 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~gv-------------------~vLh 239 (333)
++.+|||||||+|..+..+++..|..+++++|+ +.+++.++++ +.+ .|+.
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~ 195 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 195 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence 568999999999999999998878899999999 8888766432 122 3333
Q ss_pred cCCh-----hH--HHHHHHHHHHhCCCCcEEEEEe
Q 035738 240 DWND-----EH--CLKLLKNCYKSIPEDGKVIAVE 267 (333)
Q Consensus 240 ~~~~-----~~--~~~lL~~~~~~L~pgG~l~i~e 267 (333)
+.++ .. ..++++++++.|+|||.+++..
T Consensus 196 d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 196 DSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp ECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 3321 11 1589999999999999998864
No 210
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=98.20 E-value=6.6e-07 Score=81.73 Aligned_cols=76 Identities=17% Similarity=0.139 Sum_probs=55.3
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC------CC-e------------------EEE-----
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH------PC-M------------------WIL----- 238 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~------~g-v------------------~vL----- 238 (333)
.+..+|||||||+|.++..++++ +..+++++|+..+++.|+++ .+ + .|+
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~ 143 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 143 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence 35689999999999999999987 66799999996577665531 11 1 222
Q ss_pred ccC-ChhHHHHHHHHHHHhCCCCcEEEE
Q 035738 239 HDW-NDEHCLKLLKNCYKSIPEDGKVIA 265 (333)
Q Consensus 239 h~~-~~~~~~~lL~~~~~~L~pgG~l~i 265 (333)
+.+ ..+....+|+.+.+.|+|||+++.
T Consensus 144 ~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 144 YCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 212 223445899999999999999873
No 211
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=98.19 E-value=1.5e-06 Score=72.89 Aligned_cols=80 Identities=9% Similarity=0.007 Sum_probs=56.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe-------------------EEEccCC-
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM-------------------WILHDWN- 242 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv-------------------~vLh~~~- 242 (333)
...+|||+|||+|.++..++.+.. .+++++|+ +.+++.++++ .++ .|+.+.+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 357999999999999998887653 38999999 8888877542 121 3333322
Q ss_pred -hhHHHHHHHHHHH--hCCCCcEEEEEeeec
Q 035738 243 -DEHCLKLLKNCYK--SIPEDGKVIAVELML 270 (333)
Q Consensus 243 -~~~~~~lL~~~~~--~L~pgG~l~i~e~~~ 270 (333)
......+++.+.+ .|+|||++++.....
T Consensus 133 ~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~ 163 (202)
T 2fpo_A 133 RRGLLEETINLLEDNGWLADEALIYVESEVE 163 (202)
T ss_dssp STTTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred CCCcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 2234467888876 499999998776643
No 212
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=98.13 E-value=5.2e-06 Score=73.15 Aligned_cols=87 Identities=15% Similarity=0.041 Sum_probs=56.6
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC--C------Ce---------------
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH--P------CM--------------- 235 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~--~------gv--------------- 235 (333)
.++.+. ..+.+..+|||||||+|.++..++++ .+++++|+..++..+++. + ++
T Consensus 72 ~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~ 147 (276)
T 2wa2_A 72 AWIDER-GGVELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPF 147 (276)
T ss_dssp HHHHHT-TSCCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCC
T ss_pred HHHHHc-CCCCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCC
Confidence 344444 22557789999999999999999887 579999994453322111 1 11
Q ss_pred ---EEEccCC----h----hH-HHHHHHHHHHhCCCCc--EEEEEeee
Q 035738 236 ---WILHDWN----D----EH-CLKLLKNCYKSIPEDG--KVIAVELM 269 (333)
Q Consensus 236 ---~vLh~~~----~----~~-~~~lL~~~~~~L~pgG--~l~i~e~~ 269 (333)
.|+.++. . .. ..++|+.+.++|+||| .+++....
T Consensus 148 ~fD~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 148 QADTVLCDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred CcCEEEECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 3333322 1 11 1248999999999999 88885443
No 213
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=98.13 E-value=2.7e-06 Score=74.96 Aligned_cols=83 Identities=10% Similarity=0.057 Sum_probs=61.0
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hhHhhhCCCC------CCe----------------------EE
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPY-IKGINFDL-PHVIEHVPPH------PCM----------------------WI 237 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~gv----------------------~v 237 (333)
.....+|||+|||+|..+..+++..++ .+++++|+ +.+++.++++ .++ .|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 556789999999999999999998876 89999999 7777765432 121 23
Q ss_pred Ecc--------------CCh-------hHHHHHHHHHHHhCCCCcEEEEEeeec
Q 035738 238 LHD--------------WND-------EHCLKLLKNCYKSIPEDGKVIAVELML 270 (333)
Q Consensus 238 Lh~--------------~~~-------~~~~~lL~~~~~~L~pgG~l~i~e~~~ 270 (333)
+.+ |+. ....++|+++.+.|+|||++++.....
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 322 111 112589999999999999998876543
No 214
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=98.12 E-value=1.8e-06 Score=72.31 Aligned_cols=80 Identities=9% Similarity=-0.043 Sum_probs=55.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC--------CC--------------------e-EEEc
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH--------PC--------------------M-WILH 239 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~g--------------------v-~vLh 239 (333)
...+|||+|||+|.++..++.+.. .+++++|+ +.+++.++++ .+ . .|+.
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 357899999999999998777643 58999999 7888766431 11 1 1222
Q ss_pred cCC--hhHHHHHHHHH--HHhCCCCcEEEEEeeec
Q 035738 240 DWN--DEHCLKLLKNC--YKSIPEDGKVIAVELML 270 (333)
Q Consensus 240 ~~~--~~~~~~lL~~~--~~~L~pgG~l~i~e~~~ 270 (333)
+.+ .....++++.+ .+.|+|||.+++.....
T Consensus 132 ~~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 132 DPPFHFNLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCCCCCccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 222 23445788888 56799999998877643
No 215
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=98.12 E-value=5.8e-06 Score=72.40 Aligned_cols=79 Identities=14% Similarity=0.032 Sum_probs=53.6
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC--C------Ce------------------EEEccC
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH--P------CM------------------WILHDW 241 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~--~------gv------------------~vLh~~ 241 (333)
+.+..+|||||||+|.++..+++. .+++++|+..++..+++. + ++ .|+.++
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd~ 148 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCDV 148 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEEeC
Confidence 567789999999999999999887 579999994453222110 1 11 333332
Q ss_pred C----hh----H-HHHHHHHHHHhCCCCc--EEEEEeee
Q 035738 242 N----DE----H-CLKLLKNCYKSIPEDG--KVIAVELM 269 (333)
Q Consensus 242 ~----~~----~-~~~lL~~~~~~L~pgG--~l~i~e~~ 269 (333)
. .. . ...+|+.+.++|+||| .+++-...
T Consensus 149 ~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 149 GESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred cccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 2 11 1 1248999999999999 88885544
No 216
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=98.12 E-value=1.4e-06 Score=78.77 Aligned_cols=76 Identities=18% Similarity=0.149 Sum_probs=53.8
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC------C-Ce------------------EEE-----
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH------P-CM------------------WIL----- 238 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~------~-gv------------------~vL----- 238 (333)
.+..+|||||||+|.++..++++ +..+++++|+..+++.+++. . .+ .|+
T Consensus 37 ~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~ 115 (328)
T 1g6q_1 37 FKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred cCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCch
Confidence 35679999999999999988876 55689999996566655431 0 11 222
Q ss_pred ccC-ChhHHHHHHHHHHHhCCCCcEEEE
Q 035738 239 HDW-NDEHCLKLLKNCYKSIPEDGKVIA 265 (333)
Q Consensus 239 h~~-~~~~~~~lL~~~~~~L~pgG~l~i 265 (333)
+.+ .+.....+|+.+.+.|+|||+++.
T Consensus 116 ~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 116 YFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 222 223345899999999999999873
No 217
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=98.11 E-value=2.1e-06 Score=73.02 Aligned_cols=78 Identities=14% Similarity=0.106 Sum_probs=57.5
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCCCC-----------CCe------------------E
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVPPH-----------PCM------------------W 236 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-----------~gv------------------~ 236 (333)
..+..+|||||||+|..+..+++.. |..+++++|+ +.+++.++++ .++ .
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 4567899999999999999999885 6679999999 7777766431 122 2
Q ss_pred EEccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738 237 ILHDWNDEHCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 237 vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
|+.... +..+++++.+.|+|||++++...
T Consensus 155 i~~~~~---~~~~~~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 155 IHVGAA---APVVPQALIDQLKPGGRLILPVG 183 (226)
T ss_dssp EEECSB---BSSCCHHHHHTEEEEEEEEEEES
T ss_pred EEECCc---hHHHHHHHHHhcCCCcEEEEEEe
Confidence 221111 12567899999999999999765
No 218
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=98.10 E-value=1.1e-05 Score=72.00 Aligned_cols=77 Identities=16% Similarity=0.094 Sum_probs=51.6
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-----hhHhhhCC--CC--CCe-----------------EEEccC
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-----PHVIEHVP--PH--PCM-----------------WILHDW 241 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~--~~--~gv-----------------~vLh~~ 241 (333)
+.+..+|||||||+|.++..++++ .+++++|+ +..++..+ .. +++ .|+.++
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~ 156 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDI 156 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECC
Confidence 556789999999999999999987 36888887 43322211 10 111 444443
Q ss_pred C--------hhH-HHHHHHHHHHhCCCCcEEEEEe
Q 035738 242 N--------DEH-CLKLLKNCYKSIPEDGKVIAVE 267 (333)
Q Consensus 242 ~--------~~~-~~~lL~~~~~~L~pgG~l~i~e 267 (333)
. +.. ...+|+.++++|+|||.+++..
T Consensus 157 ~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv 191 (305)
T 2p41_A 157 GESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKV 191 (305)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred ccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 3 111 2258999999999999888743
No 219
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=98.10 E-value=5.1e-06 Score=73.09 Aligned_cols=105 Identities=13% Similarity=0.105 Sum_probs=76.5
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CC-e-----------------EEEccCC
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PC-M-----------------WILHDWN 242 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~g-v-----------------~vLh~~~ 242 (333)
..++.+|||+|||+|.++..++++. ..+++++|+ |.+++.++++ .+ + .|+.+.+
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCC
Confidence 4467899999999999999998764 468999999 8888877653 11 1 4555544
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCee
Q 035738 243 DEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSGI 317 (333)
Q Consensus 243 ~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~~ 317 (333)
. .+...|..+.+.|+|||.|.+.+....+.. .....+.++++.++.|+++.
T Consensus 202 ~-~~~~~l~~a~~~lk~gG~ih~~~~~~e~~~-----------------------~~~~~e~i~~~~~~~g~~v~ 252 (278)
T 3k6r_A 202 V-RTHEFIPKALSIAKDGAIIHYHNTVPEKLM-----------------------PREPFETFKRITKEYGYDVE 252 (278)
T ss_dssp S-SGGGGHHHHHHHEEEEEEEEEEEEEEGGGT-----------------------TTTTHHHHHHHHHHTTCEEE
T ss_pred C-cHHHHHHHHHHHcCCCCEEEEEeeeccccc-----------------------chhHHHHHHHHHHHcCCcEE
Confidence 2 234789999999999999998887643210 01235677888899998653
No 220
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=98.08 E-value=3.6e-06 Score=74.41 Aligned_cols=76 Identities=12% Similarity=0.116 Sum_probs=53.0
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec--hhHhhhCCCCC----------------Ce--------------
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL--PHVIEHVPPHP----------------CM-------------- 235 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~~----------------gv-------------- 235 (333)
.....+|||||||+|.++..+++.. ..+++++|+ +.+++.++++. ++
T Consensus 77 ~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 155 (281)
T 3bzb_A 77 LIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL 155 (281)
T ss_dssp GTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred hcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence 3456799999999999999888753 358999999 45654332110 11
Q ss_pred ---------------EEEccCChhHHHHHHHHHHHhCC---C--CcEEEEE
Q 035738 236 ---------------WILHDWNDEHCLKLLKNCYKSIP---E--DGKVIAV 266 (333)
Q Consensus 236 ---------------~vLh~~~~~~~~~lL~~~~~~L~---p--gG~l~i~ 266 (333)
.++++ .+....+++.+.+.|+ | ||+++++
T Consensus 156 ~~~~~~~~fD~Ii~~dvl~~--~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~ 204 (281)
T 3bzb_A 156 QRCTGLQRFQVVLLADLLSF--HQAHDALLRSVKMLLALPANDPTAVALVT 204 (281)
T ss_dssp HHHHSCSSBSEEEEESCCSC--GGGHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred HhhccCCCCCEEEEeCcccC--hHHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 22232 3344589999999999 9 9987774
No 221
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=98.06 E-value=1.7e-06 Score=73.86 Aligned_cols=76 Identities=9% Similarity=0.082 Sum_probs=60.0
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----C------------------Ce----EEEcc
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----P------------------CM----WILHD 240 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~------------------gv----~vLh~ 240 (333)
..+.+|||||||+|-++..+. |..+++++|+ +.+++.++++ + ++ .++|.
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~ 180 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPL 180 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence 568899999999999999888 8999999999 8888877653 0 01 33477
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738 241 WNDEHCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 241 ~~~~~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
+.+++....+ ++.++|++++.++-.+.
T Consensus 181 LE~q~~~~~~-~ll~aL~~~~vvVsfPt 207 (253)
T 3frh_A 181 LEREQAGSAM-ALLQSLNTPRMAVSFPT 207 (253)
T ss_dssp HHHHSTTHHH-HHHHHCBCSEEEEEEEC
T ss_pred hhhhchhhHH-HHHHHhcCCCEEEEcCh
Confidence 7766655566 88899999988887773
No 222
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=98.03 E-value=2.2e-05 Score=72.23 Aligned_cols=45 Identities=11% Similarity=-0.043 Sum_probs=39.9
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH 232 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~ 232 (333)
+.+..+|||+|||+|.++..++...+..+++++|+ +.+++.|+++
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n 260 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMN 260 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHH
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Confidence 55678999999999999999999988778999999 8899888754
No 223
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=98.03 E-value=3.2e-06 Score=72.00 Aligned_cols=82 Identities=17% Similarity=0.191 Sum_probs=58.1
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHC-----CCCeEEEeec-hhHhhhCCCC-----------CCeEEEc-cCCh------
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKY-----PYIKGINFDL-PHVIEHVPPH-----------PCMWILH-DWND------ 243 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~-----p~~~~~~~D~-~~~~~~a~~~-----------~gv~vLh-~~~~------ 243 (333)
..+..+|||||||+|.++..+++.. |+.+++++|+ +.+++.++++ .++.+.+ +..+
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 5567899999999999999999986 5789999999 7777766532 1221110 1000
Q ss_pred ------------hHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738 244 ------------EHCLKLLKNCYKSIPEDGKVIAVELM 269 (333)
Q Consensus 244 ------------~~~~~lL~~~~~~L~pgG~l~i~e~~ 269 (333)
.....+++++.+.|+|||++++.-..
T Consensus 158 ~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 158 KELGLFDAIHVGASASELPEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp HHHCCEEEEEECSBBSSCCHHHHHHEEEEEEEEEEEEE
T ss_pred ccCCCcCEEEECCchHHHHHHHHHhcCCCcEEEEEEcc
Confidence 00114678999999999999988664
No 224
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=98.01 E-value=1.3e-05 Score=72.46 Aligned_cols=78 Identities=14% Similarity=0.116 Sum_probs=57.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------C--Ce----------------------EEE
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------P--CM----------------------WIL 238 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~--gv----------------------~vL 238 (333)
+..+|||+|||+|.++..+++... +++++|+ +.+++.++++ . .+ .|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 457999999999999999998644 8999999 7888776542 1 12 232
Q ss_pred ccCC-------------hhHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738 239 HDWN-------------DEHCLKLLKNCYKSIPEDGKVIAVELM 269 (333)
Q Consensus 239 h~~~-------------~~~~~~lL~~~~~~L~pgG~l~i~e~~ 269 (333)
.+.| .+...++++++.+.|+|||.+++....
T Consensus 231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 2222 123458999999999999997776653
No 225
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=97.98 E-value=2.2e-06 Score=73.15 Aligned_cols=78 Identities=10% Similarity=0.105 Sum_probs=55.5
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCC------CCeEEEeec-hhHhhhCCCC-----------CCe--------------
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYP------YIKGINFDL-PHVIEHVPPH-----------PCM-------------- 235 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p------~~~~~~~D~-~~~~~~a~~~-----------~gv-------------- 235 (333)
..+..+|||||||+|.++..+++..+ ..+++++|+ +.+++.++++ .++
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 45678999999999999999998765 368999998 7777765431 112
Q ss_pred ----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738 236 ----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 236 ----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
.|+....- ..+++++.+.|+|||++++.-.
T Consensus 162 ~~fD~I~~~~~~---~~~~~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 162 APYNAIHVGAAA---PDTPTELINQLASGGRLIVPVG 195 (227)
T ss_dssp CSEEEEEECSCB---SSCCHHHHHTEEEEEEEEEEES
T ss_pred CCccEEEECCch---HHHHHHHHHHhcCCCEEEEEEe
Confidence 11111111 1356889999999999988754
No 226
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=97.98 E-value=3.5e-06 Score=82.02 Aligned_cols=81 Identities=15% Similarity=0.220 Sum_probs=60.6
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----C--Ce-------------------------E
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----P--CM-------------------------W 236 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~--gv-------------------------~ 236 (333)
.++.+|||||||+|.++..+++. +.+++|+|+ +.+++.|+.+ . ++ .
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence 35689999999999999999987 468999999 8888876532 1 11 5
Q ss_pred EEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 035738 237 ILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLP 271 (333)
Q Consensus 237 vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~ 271 (333)
+||+++++....-+.++.+.|+++++-++...+..
T Consensus 143 ~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~ 177 (569)
T 4azs_A 143 VFHHIVHLHGIDEVKRLLSRLADVTQAVILELAVK 177 (569)
T ss_dssp CHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCCT
T ss_pred chhcCCCHHHHHHHHHHHHHhccccceeeEEeccc
Confidence 67777777645555667778888887777766543
No 227
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=97.97 E-value=2.4e-07 Score=79.79 Aligned_cols=40 Identities=20% Similarity=0.222 Sum_probs=35.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP 231 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 231 (333)
...+|||+|||+|.++..+++.. .+++++|+ +.+++.+++
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~ 118 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARN 118 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHH
Confidence 56899999999999999999875 78999999 888887764
No 228
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=97.96 E-value=2.3e-05 Score=73.09 Aligned_cols=87 Identities=13% Similarity=0.154 Sum_probs=61.1
Q ss_pred HHhhccCCCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCCCC-----------C--Ce-EEEcc----
Q 035738 181 ILESYKGFDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVPPH-----------P--CM-WILHD---- 240 (333)
Q Consensus 181 ~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-----------~--gv-~vLh~---- 240 (333)
+++.+. .....+|||+|||+|.++..+++++ +..+++++|+ +.+++.|... + .. .|+.+
T Consensus 31 ~~~~~~-~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a~~~~~~~~D~~~~~~~~~fD~Ii~NPPy~ 109 (421)
T 2ih2_A 31 MVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFLLWEPGEAFDLILGNPPYG 109 (421)
T ss_dssp HHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTEEEEESCGGGCCCSSCEEEEEECCCCC
T ss_pred HHHhhc-cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhCCCCcEEeCChhhcCccCCCCEEEECcCcc
Confidence 334443 3345699999999999999999987 6789999999 7887766321 0 11 22221
Q ss_pred -----------CChhHH-----------------HHHHHHHHHhCCCCcEEEEEee
Q 035738 241 -----------WNDEHC-----------------LKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 241 -----------~~~~~~-----------------~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
.+++.. ..+++++.+.|+|||+++++-+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p 165 (421)
T 2ih2_A 110 IVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 165 (421)
T ss_dssp CBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 222221 1568999999999999998876
No 229
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=97.92 E-value=3.3e-06 Score=74.85 Aligned_cols=49 Identities=18% Similarity=0.358 Sum_probs=39.4
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCC
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVP 230 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~ 230 (333)
..+++.++ ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.++
T Consensus 18 ~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~ 67 (285)
T 1zq9_A 18 NSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELH 67 (285)
T ss_dssp HHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHH
T ss_pred HHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHH
Confidence 45555555 6677899999999999999999985 47999999 77776554
No 230
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=97.87 E-value=2.2e-05 Score=69.45 Aligned_cols=101 Identities=11% Similarity=0.072 Sum_probs=66.3
Q ss_pred CCCCCeEEEEcCC------ccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCC-C---------CC-e-EEEccCC-----
Q 035738 188 FDNIKQLVDVGGG------IGVTLQAITTKYP-YIKGINFDL-PHVIEHVPP-H---------PC-M-WILHDWN----- 242 (333)
Q Consensus 188 ~~~~~~vlDVGgG------~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-~---------~g-v-~vLh~~~----- 242 (333)
+.+..+|||+||| +|. ..+++..| +.+++++|+ +. ++.+.- . ++ + .|+.+..
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v~~v~~~i~gD~~~~~~~~~fD~Vvsn~~~~~~g 137 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-VSDADSTLIGDCATVHTANKWDLIISDMYDPRTK 137 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-BCSSSEEEESCGGGCCCSSCEEEEEECCCCCC--
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-CCCCEEEEECccccCCccCcccEEEEcCCccccc
Confidence 5678899999994 466 44566666 689999999 54 332221 1 11 1 3333321
Q ss_pred ---------hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCC
Q 035738 243 ---------DEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAG 313 (333)
Q Consensus 243 ---------~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aG 313 (333)
.+...++|+.+++.|+|||++++...... ..+++.+++++.|
T Consensus 138 ~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~-----------------------------~~~~l~~~l~~~G 188 (290)
T 2xyq_A 138 HVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS-----------------------------WNADLYKLMGHFS 188 (290)
T ss_dssp -CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS-----------------------------CCHHHHHHHTTEE
T ss_pred cccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC-----------------------------CHHHHHHHHHHcC
Confidence 12245899999999999999998654211 1236777888888
Q ss_pred CCeeEEe
Q 035738 314 FSGISCE 320 (333)
Q Consensus 314 f~~~~~~ 320 (333)
|..+++.
T Consensus 189 F~~v~~~ 195 (290)
T 2xyq_A 189 WWTAFVT 195 (290)
T ss_dssp EEEEEEE
T ss_pred CcEEEEE
Confidence 8777665
No 231
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=97.84 E-value=2.3e-05 Score=72.56 Aligned_cols=78 Identities=14% Similarity=0.145 Sum_probs=58.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CC-e-----------------EEEccCCh-
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PC-M-----------------WILHDWND- 243 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~g-v-----------------~vLh~~~~- 243 (333)
++.+|||+|||+|.++..+++... +++++|+ +.+++.++++ .. + .|+.+.|.
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga--~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f 291 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGA--YALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL 291 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred CCCeEEEcccchhHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence 478999999999999999998743 4999999 8888877653 10 1 33333321
Q ss_pred -----------hHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738 244 -----------EHCLKLLKNCYKSIPEDGKVIAVELM 269 (333)
Q Consensus 244 -----------~~~~~lL~~~~~~L~pgG~l~i~e~~ 269 (333)
..-.++++.+.+.|+|||+++++...
T Consensus 292 ~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 292 VKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp CSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 12347899999999999999877763
No 232
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=97.83 E-value=1.3e-05 Score=74.14 Aligned_cols=77 Identities=10% Similarity=0.059 Sum_probs=58.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------CCe----------------------EEEcc
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------PCM----------------------WILHD 240 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~gv----------------------~vLh~ 240 (333)
+..+|||+|||+|.++..+++. ..+++++|+ +.+++.++++ .++ .|+.+
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 6679999999999999999988 568999999 8888877643 112 33333
Q ss_pred CCh------------hHHHHHHHHHHHhCCCCcEEEEEee
Q 035738 241 WND------------EHCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 241 ~~~------------~~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
.|. ....++++++.+.|+|||.+++...
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 326 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 326 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 321 3345789999999999999888775
No 233
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=97.82 E-value=6.8e-05 Score=68.63 Aligned_cols=75 Identities=11% Similarity=0.022 Sum_probs=43.6
Q ss_pred HHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhh----HH-HhhC----------CC--CCcCCHHHHHHHHH
Q 035738 248 KLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDV----LM-MIQS----------PG--GKERTRHEFMTLAT 310 (333)
Q Consensus 248 ~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~----~m-~~~~----------~~--g~~rt~~e~~~ll~ 310 (333)
.+|+..++.|+|||++++.-...++............+.+. .. +... .+ -..++.+|++++++
T Consensus 206 ~fL~~ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~ 285 (374)
T 3b5i_A 206 EFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVD 285 (374)
T ss_dssp HHHHHHHHHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHH
Confidence 46999999999999999988876553111000000000011 00 1000 01 12468999999998
Q ss_pred -hCCCCeeEEeec
Q 035738 311 -GAGFSGISCERA 322 (333)
Q Consensus 311 -~aGf~~~~~~~~ 322 (333)
+.||++.++...
T Consensus 286 ~~~~F~I~~le~~ 298 (374)
T 3b5i_A 286 ANGSFAIDKLVVY 298 (374)
T ss_dssp HHCSEEEEEEEEE
T ss_pred hcCCcEEEEEEEE
Confidence 599998876543
No 234
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=97.81 E-value=1.4e-05 Score=75.39 Aligned_cols=83 Identities=13% Similarity=0.159 Sum_probs=60.9
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hhHhhhCCCC------CCe--------------------EEEc
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPY-IKGINFDL-PHVIEHVPPH------PCM--------------------WILH 239 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~gv--------------------~vLh 239 (333)
...+.+|||+|||+|..+..+++..++ .+++++|+ +..++.++++ .++ .|+.
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~ 336 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL 336 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence 567789999999999999999999887 89999999 7766544321 111 3332
Q ss_pred c-----------CCh-------hHH-------HHHHHHHHHhCCCCcEEEEEeeec
Q 035738 240 D-----------WND-------EHC-------LKLLKNCYKSIPEDGKVIAVELML 270 (333)
Q Consensus 240 ~-----------~~~-------~~~-------~~lL~~~~~~L~pgG~l~i~e~~~ 270 (333)
+ .++ ++. .++|+++.+.|+|||++++.+...
T Consensus 337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 1 111 111 578999999999999999887644
No 235
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=97.79 E-value=2e-05 Score=73.18 Aligned_cols=78 Identities=14% Similarity=0.073 Sum_probs=58.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------C-Ce----------------------EEEc
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------P-CM----------------------WILH 239 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-gv----------------------~vLh 239 (333)
+..+|||+|||+|.++..+++. +..+++++|+ +.+++.++++ . ++ .|+.
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 6689999999999999999986 4458999999 8888776542 1 22 3333
Q ss_pred cCCh------------hHHHHHHHHHHHhCCCCcEEEEEee
Q 035738 240 DWND------------EHCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 240 ~~~~------------~~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
+.|. .....+++++.+.|+|||.+++...
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 336 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC 336 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 3322 3456789999999999999888775
No 236
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=97.78 E-value=1.5e-05 Score=66.38 Aligned_cols=43 Identities=21% Similarity=0.211 Sum_probs=35.8
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP 231 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 231 (333)
.....+|||+|||+|.++..+++. +..+++++|+ +.+++.+++
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~ 92 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKR 92 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHH
T ss_pred CCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHH
Confidence 445679999999999999999887 5557999999 888877654
No 237
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=97.78 E-value=1.5e-05 Score=75.09 Aligned_cols=81 Identities=10% Similarity=0.095 Sum_probs=60.6
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hhHhhhCCCC---CC--e-------------------EEEcc-
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPY-IKGINFDL-PHVIEHVPPH---PC--M-------------------WILHD- 240 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~---~g--v-------------------~vLh~- 240 (333)
...+.+|||+|||+|..+..+++..++ .+++++|+ +.+++.++++ .| + .|+-+
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~D~ 178 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDA 178 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEEC
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccCCEEEECC
Confidence 556789999999999999999998875 78999999 7787766542 00 1 44422
Q ss_pred -----------------CChhHH-------HHHHHHHHHhCCCCcEEEEEee
Q 035738 241 -----------------WNDEHC-------LKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 241 -----------------~~~~~~-------~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
|+++.. .++|+++.+.|+|||+|+....
T Consensus 179 PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTC 230 (464)
T 3m6w_A 179 PCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTC 230 (464)
T ss_dssp CCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred CcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 222222 5799999999999999987654
No 238
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=97.76 E-value=0.00011 Score=63.36 Aligned_cols=50 Identities=8% Similarity=0.262 Sum_probs=40.4
Q ss_pred HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCC
Q 035738 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVP 230 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~ 230 (333)
...+++.++ .....+|||||||+|.++..++++. .+++++|+ +.+++.++
T Consensus 19 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~ 69 (244)
T 1qam_A 19 IDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTE 69 (244)
T ss_dssp HHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHH
T ss_pred HHHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHH
Confidence 345566555 6677899999999999999999987 68999999 77877654
No 239
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=97.76 E-value=2.9e-05 Score=72.83 Aligned_cols=83 Identities=16% Similarity=0.190 Sum_probs=61.4
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---C--------------------C-e-EEEccC
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---P--------------------C-M-WILHDW 241 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~--------------------g-v-~vLh~~ 241 (333)
..+..+|||+|||+|..+..+++..++.+++++|+ +..++.++++ . + . .|+-+.
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 55678999999999999999999999889999999 7766654321 0 1 1 333221
Q ss_pred -----------C-------hhHH-------HHHHHHHHHhCCCCcEEEEEeeec
Q 035738 242 -----------N-------DEHC-------LKLLKNCYKSIPEDGKVIAVELML 270 (333)
Q Consensus 242 -----------~-------~~~~-------~~lL~~~~~~L~pgG~l~i~e~~~ 270 (333)
+ .++. .++|+++.+.|+|||++++.+...
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 1 1111 478999999999999999987543
No 240
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=97.74 E-value=5.6e-05 Score=63.11 Aligned_cols=43 Identities=16% Similarity=0.099 Sum_probs=35.5
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP 231 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 231 (333)
.....+|||+|||+|.++..+++..+ .+++++|+ +.+++.+++
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~ 90 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIE 90 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHH
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHH
Confidence 34567999999999999999988743 47999999 888887764
No 241
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=97.73 E-value=2.5e-05 Score=70.80 Aligned_cols=42 Identities=24% Similarity=0.230 Sum_probs=36.7
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP 231 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 231 (333)
.++.+|||||||+|..+..+++..+ .+++.+|+ |.+++.|++
T Consensus 187 p~pkrVL~IGgG~G~~arellk~~~-~~Vt~VEID~~vie~Ar~ 229 (364)
T 2qfm_A 187 YTGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKK 229 (364)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEEECChhHHHHHHHHCCC-CEEEEEECCHHHHHHHHH
Confidence 3678999999999999999998765 78999999 889887765
No 242
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=97.71 E-value=3.8e-05 Score=72.24 Aligned_cols=81 Identities=12% Similarity=0.133 Sum_probs=60.3
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hhHhhhCCCC------CCe-------------------EEEcc
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPY-IKGINFDL-PHVIEHVPPH------PCM-------------------WILHD 240 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~gv-------------------~vLh~ 240 (333)
...+.+|||+|||+|..+..+++..++ .+++++|+ +..++.++++ .++ .||.+
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 556789999999999999999988654 78999999 7777766542 122 44443
Q ss_pred CC------------------hhH-------HHHHHHHHHHhCCCCcEEEEEee
Q 035738 241 WN------------------DEH-------CLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 241 ~~------------------~~~-------~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
-| .+. ..++|+++.+.|+|||+|+....
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 235 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTC 235 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEES
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 32 111 13789999999999999887654
No 243
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=97.67 E-value=8.8e-05 Score=67.02 Aligned_cols=122 Identities=12% Similarity=0.162 Sum_probs=85.9
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCC------------------------------C------
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPP------------------------------H------ 232 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------------------------------~------ 232 (333)
.+...||.+|||.......+...+++++++-+|.|.+++..++ +
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 3568999999999999999999888988999999888653211 1
Q ss_pred ----------------CC---e----EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccch--h
Q 035738 233 ----------------PC---M----WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDS--D 287 (333)
Q Consensus 233 ----------------~g---v----~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~--d 287 (333)
++ + .+|++++++.+.++|+.+.+.+ |+|.+++.|.+.+..+.. .+...+ .
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~----~fg~~m~~~ 250 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPND----RFGAIMQSN 250 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTC----CHHHHHHHH
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcc----hHHHHHHHH
Confidence 00 0 7888999999999999999987 788888999987733211 111111 0
Q ss_pred hHH-Hhh-CCC-CCcCCHHHHHHHHHhCCCC
Q 035738 288 VLM-MIQ-SPG-GKERTRHEFMTLATGAGFS 315 (333)
Q Consensus 288 ~~m-~~~-~~~-g~~rt~~e~~~ll~~aGf~ 315 (333)
+.- ..+ ..+ ....+.++..++|.++||+
T Consensus 251 l~~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 251 LKESRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHHHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred hhcccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 000 100 011 2345889999999999997
No 244
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=97.66 E-value=1.3e-05 Score=72.94 Aligned_cols=81 Identities=10% Similarity=0.165 Sum_probs=58.8
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCC-----CeEEEeec-hhHhhhCCCC---CC------------------e-EEEc
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPY-----IKGINFDL-PHVIEHVPPH---PC------------------M-WILH 239 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~~---~g------------------v-~vLh 239 (333)
.....+|||+|||+|.++..+++..+. .+++++|+ +.+++.|+.+ .+ . .|+.
T Consensus 128 ~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~ 207 (344)
T 2f8l_A 128 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVIS 207 (344)
T ss_dssp TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEE
T ss_pred CCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEE
Confidence 345679999999999999999988764 68999999 7887766532 00 0 2332
Q ss_pred c-----CChhH----------------HHHHHHHHHHhCCCCcEEEEEee
Q 035738 240 D-----WNDEH----------------CLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 240 ~-----~~~~~----------------~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
+ ++.++ ...+++++.+.|+|||+++++.+
T Consensus 208 NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 208 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 2 22221 12589999999999999988876
No 245
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=97.63 E-value=2.2e-05 Score=72.08 Aligned_cols=75 Identities=16% Similarity=0.225 Sum_probs=50.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhHhhhCCCC------CC-e-----------------EEEccC----
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHVIEHVPPH------PC-M-----------------WILHDW---- 241 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~------~g-v-----------------~vLh~~---- 241 (333)
+..+|||||||+|.++...+++. ..+++++|...+++.|++. .+ | -|+..|
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~ 161 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYG 161 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTT
T ss_pred CCCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccccc
Confidence 45789999999999887666544 3589999986566666531 11 1 222211
Q ss_pred --ChhHHHHHHHHHHHhCCCCcEEEE
Q 035738 242 --NDEHCLKLLKNCYKSIPEDGKVIA 265 (333)
Q Consensus 242 --~~~~~~~lL~~~~~~L~pgG~l~i 265 (333)
.+.....++....+.|+|||+++-
T Consensus 162 l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 162 LLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp BTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred ccccchhhhHHHHHHhhCCCCceECC
Confidence 223455788888899999998763
No 246
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=97.63 E-value=5.1e-05 Score=70.34 Aligned_cols=79 Identities=9% Similarity=-0.013 Sum_probs=56.4
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------C-Ce----------------------EE
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------P-CM----------------------WI 237 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~-gv----------------------~v 237 (333)
.+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.++++ . ++ .|
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I 297 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence 356799999999999999999864 458999999 7887766532 1 22 23
Q ss_pred EccCCh------------hHHHHHHHHHHHhCCCCcEEEEEee
Q 035738 238 LHDWND------------EHCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 238 Lh~~~~------------~~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
+.+.|. ....+++.++.+.|+|||.+++...
T Consensus 298 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 340 (396)
T 3c0k_A 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSC 340 (396)
T ss_dssp EECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 333221 3445788888888888888777654
No 247
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=97.62 E-value=5.7e-05 Score=69.24 Aligned_cols=72 Identities=13% Similarity=0.064 Sum_probs=41.7
Q ss_pred HHHHHHhCCCCcEEEEEeeecCCCC-CCccc-cccccchhhHHHhh-------CCC--CCcCCHHHHHHHHHhCC-CCee
Q 035738 250 LKNCYKSIPEDGKVIAVELMLPEVP-NTSIE-SKSNSDSDVLMMIQ-------SPG--GKERTRHEFMTLATGAG-FSGI 317 (333)
Q Consensus 250 L~~~~~~L~pgG~l~i~e~~~~~~~-~~~~~-~~~~~~~d~~m~~~-------~~~--g~~rt~~e~~~ll~~aG-f~~~ 317 (333)
|+..++.|+|||++++.-...++.. .+... .....+.++..... ..+ -..++.+|++++++++| |++.
T Consensus 208 L~~Ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~ 287 (384)
T 2efj_A 208 LRIHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEIL 287 (384)
T ss_dssp HHHHHHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEE
Confidence 8888999999999999888665530 11000 00111222111100 001 12468999999999985 7777
Q ss_pred EEee
Q 035738 318 SCER 321 (333)
Q Consensus 318 ~~~~ 321 (333)
++..
T Consensus 288 ~le~ 291 (384)
T 2efj_A 288 YLET 291 (384)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6643
No 248
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=97.61 E-value=3e-05 Score=68.42 Aligned_cols=82 Identities=18% Similarity=0.299 Sum_probs=64.2
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-----------CCe-------------------E
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-----------PCM-------------------W 236 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~gv-------------------~ 236 (333)
-+++.+||-||+|.|..+.++++..+..+++++|+ |.|++.++++ |.+ -
T Consensus 81 ~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDv 160 (294)
T 3o4f_A 81 HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDV 160 (294)
T ss_dssp SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEE
T ss_pred CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCE
Confidence 34678999999999999999999878789999999 8899887653 222 5
Q ss_pred EEccCChhH-------HHHHHHHHHHhCCCCcEEEEEeee
Q 035738 237 ILHDWNDEH-------CLKLLKNCYKSIPEDGKVIAVELM 269 (333)
Q Consensus 237 vLh~~~~~~-------~~~lL~~~~~~L~pgG~l~i~e~~ 269 (333)
|+.+.+|+. ....++.++++|+|||.++..-..
T Consensus 161 Ii~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~s 200 (294)
T 3o4f_A 161 IISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGV 200 (294)
T ss_dssp EEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEE
T ss_pred EEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCC
Confidence 555555432 136899999999999999887543
No 249
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=97.60 E-value=5.6e-05 Score=67.28 Aligned_cols=54 Identities=22% Similarity=0.284 Sum_probs=45.0
Q ss_pred HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH 232 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~ 232 (333)
...+++.+. ..+..+|||+|||+|.++..+++++|+.+++++|. +.+++.|+++
T Consensus 15 l~e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~ 69 (301)
T 1m6y_A 15 VREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEK 69 (301)
T ss_dssp HHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Confidence 344555555 66778999999999999999999999899999999 8899887653
No 250
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=97.59 E-value=4e-05 Score=68.26 Aligned_cols=49 Identities=20% Similarity=0.306 Sum_probs=38.8
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCC
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVP 230 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~ 230 (333)
..+++.+. .....+|||||||+|.++..++++ ..+++++|+ +.+++.++
T Consensus 32 ~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~ 81 (299)
T 2h1r_A 32 DKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVK 81 (299)
T ss_dssp HHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHH
T ss_pred HHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHH
Confidence 34555555 667789999999999999999887 358999999 77776654
No 251
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=97.57 E-value=0.00011 Score=69.59 Aligned_cols=81 Identities=15% Similarity=0.273 Sum_probs=59.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hhHhhhCCCC------CCe-------------------EEEcc--
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDL-PHVIEHVPPH------PCM-------------------WILHD-- 240 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~gv-------------------~vLh~-- 240 (333)
...+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++++ .++ .||.+
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 678999999999999999999875 578999999 7777665432 111 33332
Q ss_pred ----------------CChhH-------HHHHHHHHHHhCCCCcEEEEEeeec
Q 035738 241 ----------------WNDEH-------CLKLLKNCYKSIPEDGKVIAVELML 270 (333)
Q Consensus 241 ----------------~~~~~-------~~~lL~~~~~~L~pgG~l~i~e~~~ 270 (333)
|++++ ..++|+++.+.|+|||+|++.....
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 22222 2478999999999999998876543
No 252
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=97.54 E-value=7.1e-05 Score=64.79 Aligned_cols=52 Identities=23% Similarity=0.403 Sum_probs=42.1
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH 232 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~ 232 (333)
..+++.++ .....+|||||||+|.++..++++ +..+++++|+ +.+++.+++.
T Consensus 21 ~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~ 73 (249)
T 3ftd_A 21 KKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSI 73 (249)
T ss_dssp HHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTS
T ss_pred HHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhc
Confidence 45556555 667789999999999999999987 4578999999 7888877654
No 253
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=97.54 E-value=4.5e-05 Score=69.09 Aligned_cols=77 Identities=18% Similarity=0.224 Sum_probs=58.6
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC-------CCe---------------EEEccCChhH
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH-------PCM---------------WILHDWNDEH 245 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~gv---------------~vLh~~~~~~ 245 (333)
....+|||+|||+|.++.. ++ ...+++++|+ +.+++.++++ .++ .|+.+.+ ..
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP-~~ 269 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLP-KF 269 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCT-TT
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCc-Hh
Confidence 4678999999999999999 76 5678999999 8888877643 122 2333322 23
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeee
Q 035738 246 CLKLLKNCYKSIPEDGKVIAVELM 269 (333)
Q Consensus 246 ~~~lL~~~~~~L~pgG~l~i~e~~ 269 (333)
..++++.+.+.|+|||.+++.+..
T Consensus 270 ~~~~l~~~~~~L~~gG~l~~~~~~ 293 (336)
T 2yx1_A 270 AHKFIDKALDIVEEGGVIHYYTIG 293 (336)
T ss_dssp GGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCCEEEEEEee
Confidence 348999999999999999998874
No 254
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=97.49 E-value=0.00011 Score=67.87 Aligned_cols=42 Identities=10% Similarity=-0.099 Sum_probs=34.7
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP 231 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 231 (333)
.+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.|++
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~ 253 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLA 253 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHH
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHH
Confidence 456799999999999999998853 247999999 888887654
No 255
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=97.47 E-value=0.00044 Score=62.83 Aligned_cols=73 Identities=10% Similarity=-0.077 Sum_probs=42.0
Q ss_pred HHHHHHHHhCCCCcEEEEEeeecCCCCCCcc-----cc-ccccchhhHHHhhCC-------C--CCcCCHHHHHHHHHhC
Q 035738 248 KLLKNCYKSIPEDGKVIAVELMLPEVPNTSI-----ES-KSNSDSDVLMMIQSP-------G--GKERTRHEFMTLATGA 312 (333)
Q Consensus 248 ~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~-----~~-~~~~~~d~~m~~~~~-------~--g~~rt~~e~~~ll~~a 312 (333)
.+|+..++.|+|||++++.-...++...... .+ ...++.++....... + -..++.+|+++++++.
T Consensus 190 ~FL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~ 269 (359)
T 1m6e_X 190 LFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKE 269 (359)
T ss_dssp HHHHHHHHHBCTTCEEEEEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCceEEEEEecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHc
Confidence 4599999999999999998887665321000 00 001111111110000 1 1246899999999999
Q ss_pred CC-CeeEEe
Q 035738 313 GF-SGISCE 320 (333)
Q Consensus 313 Gf-~~~~~~ 320 (333)
|+ ++.++.
T Consensus 270 G~F~i~~~e 278 (359)
T 1m6e_X 270 GSFLIDHIE 278 (359)
T ss_dssp TTBCCEEEE
T ss_pred CCceEEEEE
Confidence 64 666543
No 256
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=97.47 E-value=6.5e-05 Score=66.16 Aligned_cols=51 Identities=14% Similarity=0.287 Sum_probs=41.1
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCC--CeEEEeec-hhHhhhCCC
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPY--IKGINFDL-PHVIEHVPP 231 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~ 231 (333)
.+++.+. .....+|||||||+|.++..++++.+. .+++++|+ +.+++.+++
T Consensus 33 ~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~ 86 (279)
T 3uzu_A 33 AIVAAIR-PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQ 86 (279)
T ss_dssp HHHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHH
T ss_pred HHHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHH
Confidence 4555555 667789999999999999999998754 56999999 788887754
No 257
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=97.41 E-value=0.00025 Score=65.56 Aligned_cols=90 Identities=11% Similarity=0.042 Sum_probs=62.1
Q ss_pred HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCC--------------------------------------CeEEE
Q 035738 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPY--------------------------------------IKGIN 219 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~--------------------------------------~~~~~ 219 (333)
+..++.... +.+..+|||.+||+|.++.+++....+ .++++
T Consensus 190 Aa~ll~l~~-~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 268 (393)
T 3k0b_A 190 AAALVLLTS-WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIG 268 (393)
T ss_dssp HHHHHHHSC-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred HHHHHHHhC-CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEE
Confidence 344555444 778889999999999999988765443 56999
Q ss_pred eec-hhHhhhCCCC---CC----e-----------------EEEccCC-------hhHHHHHHHHHHHhCCC--CcEEEE
Q 035738 220 FDL-PHVIEHVPPH---PC----M-----------------WILHDWN-------DEHCLKLLKNCYKSIPE--DGKVIA 265 (333)
Q Consensus 220 ~D~-~~~~~~a~~~---~g----v-----------------~vLh~~~-------~~~~~~lL~~~~~~L~p--gG~l~i 265 (333)
+|+ +.+++.|+++ .| + .|+.+.| +++...+.+.+.+.|++ |++++|
T Consensus 269 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i 348 (393)
T 3k0b_A 269 GDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYV 348 (393)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEE
Confidence 999 8898887653 11 1 4555533 13445566666666655 888888
Q ss_pred Eee
Q 035738 266 VEL 268 (333)
Q Consensus 266 ~e~ 268 (333)
+..
T Consensus 349 it~ 351 (393)
T 3k0b_A 349 LTS 351 (393)
T ss_dssp EEC
T ss_pred EEC
Confidence 765
No 258
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=97.39 E-value=0.00021 Score=65.86 Aligned_cols=90 Identities=13% Similarity=0.115 Sum_probs=62.3
Q ss_pred HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCC--------------------------------------CeEEE
Q 035738 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPY--------------------------------------IKGIN 219 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~--------------------------------------~~~~~ 219 (333)
+..++.... +.+..+|||.+||+|.++.+++....+ .++++
T Consensus 184 Aa~ll~~~~-~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 262 (385)
T 3ldu_A 184 AAGLIYLTP-WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYG 262 (385)
T ss_dssp HHHHHHTSC-CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEE
T ss_pred HHHHHHhhC-CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEE
Confidence 344555444 778899999999999999988765322 57999
Q ss_pred eec-hhHhhhCCCC---CC----e-----------------EEEccCC-------hhHHHHHHHHHHHhCCC--CcEEEE
Q 035738 220 FDL-PHVIEHVPPH---PC----M-----------------WILHDWN-------DEHCLKLLKNCYKSIPE--DGKVIA 265 (333)
Q Consensus 220 ~D~-~~~~~~a~~~---~g----v-----------------~vLh~~~-------~~~~~~lL~~~~~~L~p--gG~l~i 265 (333)
+|+ +.+++.|+++ .| + .|+.+.| .++..++.+++.+.|++ |+.++|
T Consensus 263 vDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i 342 (385)
T 3ldu_A 263 YDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYL 342 (385)
T ss_dssp EESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence 999 8899888753 11 1 4444433 23445677777777765 788777
Q ss_pred Eee
Q 035738 266 VEL 268 (333)
Q Consensus 266 ~e~ 268 (333)
+..
T Consensus 343 it~ 345 (385)
T 3ldu_A 343 ITS 345 (385)
T ss_dssp EES
T ss_pred EEC
Confidence 765
No 259
>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*
Probab=97.39 E-value=0.0011 Score=59.65 Aligned_cols=121 Identities=17% Similarity=0.118 Sum_probs=85.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeechhHhhhCC--------------------------------CC----
Q 035738 190 NIKQLVDVGGGIGVTLQAITTK-YPYIKGINFDLPHVIEHVP--------------------------------PH---- 232 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~-~p~~~~~~~D~~~~~~~a~--------------------------------~~---- 232 (333)
+...||-+|||.=.....+... .++++++=+|.|++++.-+ .+
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 4679999999999999888775 3678888889998865311 10
Q ss_pred ---------------CCe-----------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccch
Q 035738 233 ---------------PCM-----------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDS 286 (333)
Q Consensus 233 ---------------~gv-----------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~ 286 (333)
.|+ .+|.+++++++.++|+.+.+..+ +|.+++.|.+.++++ +
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~-~~~~i~yE~i~p~d~-------f---- 237 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFE-RAMFINYEQVNMGDR-------F---- 237 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCTTSH-------H----
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCC-CceEEEEeccCCCCH-------H----
Confidence 011 77889999999999999999875 467778899865431 1
Q ss_pred hhHHHhhC--CC------CCcCCHHHHHHHHHhCCCCeeEEeec
Q 035738 287 DVLMMIQS--PG------GKERTRHEFMTLATGAGFSGISCERA 322 (333)
Q Consensus 287 d~~m~~~~--~~------g~~rt~~e~~~ll~~aGf~~~~~~~~ 322 (333)
.-.|...+ .| ....+.++..++|.++||+.+++...
T Consensus 238 g~~M~~~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~ 281 (334)
T 3iei_A 238 GQIMIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDM 281 (334)
T ss_dssp HHHHHHHHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred HHHHHHHHHHhCCCCcccccCCCHHHHHHHHHHcCCCcceeecH
Confidence 11111110 01 12357788999999999998887665
No 260
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=97.37 E-value=0.00039 Score=63.99 Aligned_cols=90 Identities=12% Similarity=0.033 Sum_probs=62.3
Q ss_pred HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCC--------------------------------------CeEEE
Q 035738 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPY--------------------------------------IKGIN 219 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~--------------------------------------~~~~~ 219 (333)
+..++.... +.+..+++|.+||+|.++.+.+....+ .++++
T Consensus 183 Aaall~l~~-~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~G 261 (384)
T 3ldg_A 183 AAAIILLSN-WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISG 261 (384)
T ss_dssp HHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred HHHHHHHhC-CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEE
Confidence 344555444 778899999999999999988765443 56999
Q ss_pred eec-hhHhhhCCCC---CC----e-----------------EEEccCC-------hhHHHHHHHHHHHhCCC--CcEEEE
Q 035738 220 FDL-PHVIEHVPPH---PC----M-----------------WILHDWN-------DEHCLKLLKNCYKSIPE--DGKVIA 265 (333)
Q Consensus 220 ~D~-~~~~~~a~~~---~g----v-----------------~vLh~~~-------~~~~~~lL~~~~~~L~p--gG~l~i 265 (333)
+|+ +.+++.|+++ .| + .|+.+.| +++...+.+.+.+.|++ |++++|
T Consensus 262 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i 341 (384)
T 3ldg_A 262 FDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFI 341 (384)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 999 8899888753 12 1 3444432 24455677767777765 777777
Q ss_pred Eee
Q 035738 266 VEL 268 (333)
Q Consensus 266 ~e~ 268 (333)
+..
T Consensus 342 it~ 344 (384)
T 3ldg_A 342 LTN 344 (384)
T ss_dssp EES
T ss_pred EEC
Confidence 765
No 261
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=97.34 E-value=0.00016 Score=62.68 Aligned_cols=52 Identities=12% Similarity=0.204 Sum_probs=39.7
Q ss_pred HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH 232 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~ 232 (333)
...+++.+. .....+|||||||+|.++. + .+.+..+++++|+ +.+++.+++.
T Consensus 10 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~-l-~~~~~~~v~avEid~~~~~~a~~~ 62 (252)
T 1qyr_A 10 IDSIVSAIN-PQKGQAMVEIGPGLAALTE-P-VGERLDQLTVIELDRDLAARLQTH 62 (252)
T ss_dssp HHHHHHHHC-CCTTCCEEEECCTTTTTHH-H-HHTTCSCEEEECCCHHHHHHHHTC
T ss_pred HHHHHHhcC-CCCcCEEEEECCCCcHHHH-h-hhCCCCeEEEEECCHHHHHHHHHH
Confidence 345555555 6677899999999999999 5 4555445999999 8898887764
No 262
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=97.34 E-value=9.5e-05 Score=63.75 Aligned_cols=51 Identities=12% Similarity=0.285 Sum_probs=42.0
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH 232 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~ 232 (333)
..+++.++ .....+|||||||+|.++..+++.. .+++++|+ +.+++.++++
T Consensus 19 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~ 70 (245)
T 1yub_A 19 NQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEK 70 (245)
T ss_dssp HHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCT
T ss_pred HHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHH
Confidence 45555555 6677899999999999999999986 78999999 7888887764
No 263
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=97.33 E-value=0.00019 Score=62.90 Aligned_cols=49 Identities=14% Similarity=0.137 Sum_probs=39.0
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP 231 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 231 (333)
..+++.+. .... +|||||||+|.++..++++. .+++++|+ +.+++.+++
T Consensus 37 ~~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~ 86 (271)
T 3fut_A 37 RRIVEAAR-PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEE 86 (271)
T ss_dssp HHHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHH
T ss_pred HHHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHH
Confidence 34555555 5566 99999999999999999986 57999999 788876643
No 264
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=97.32 E-value=0.00071 Score=58.62 Aligned_cols=90 Identities=13% Similarity=0.045 Sum_probs=55.7
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeech-hHhhhCCC-------------------CCC--e-
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLP-HVIEHVPP-------------------HPC--M- 235 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~-------------------~~g--v- 235 (333)
.++.+... +....+|||+|||+|.++..+++..+...++++|+. +....... .++ +
T Consensus 64 ~ei~ek~~-l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~D 142 (277)
T 3evf_A 64 RWFHERGY-VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCD 142 (277)
T ss_dssp HHHHHTTS-SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCS
T ss_pred HHHHHhCC-CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCcc
Confidence 34555533 667789999999999999998887655445444441 11000000 011 1
Q ss_pred EEEccCChh---------HHHHHHHHHHHhCCCC-cEEEEEeeec
Q 035738 236 WILHDWNDE---------HCLKLLKNCYKSIPED-GKVIAVELML 270 (333)
Q Consensus 236 ~vLh~~~~~---------~~~~lL~~~~~~L~pg-G~l~i~e~~~ 270 (333)
.|+++..+. ....+|+.+.+.|+|| |.+++ ..+.
T Consensus 143 lVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~-KVf~ 186 (277)
T 3evf_A 143 TLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCV-KVLA 186 (277)
T ss_dssp EEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE-EESC
T ss_pred EEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEE-EecC
Confidence 666666322 1235789999999999 99888 4443
No 265
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=97.32 E-value=0.00012 Score=63.49 Aligned_cols=50 Identities=14% Similarity=0.238 Sum_probs=40.5
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP 231 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 231 (333)
..+++.+. .....+|||||||+|.++..++++. .+++++|+ +.+++.+++
T Consensus 19 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~ 69 (255)
T 3tqs_A 19 QKIVSAIH-PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQK 69 (255)
T ss_dssp HHHHHHHC-CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHH
T ss_pred HHHHHhcC-CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHH
Confidence 34555555 6677899999999999999999875 68999999 788877653
No 266
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=97.31 E-value=0.00026 Score=70.37 Aligned_cols=78 Identities=13% Similarity=0.105 Sum_probs=57.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC------C--Ce-------------------EEEccC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH------P--CM-------------------WILHDW 241 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~--gv-------------------~vLh~~ 241 (333)
++.+|||+|||+|.++..++.... .+++++|+ +.+++.++++ . .+ .|+.+.
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGA-RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCCcEEEeeechhHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 457999999999999999887443 46999999 8888877643 1 12 344433
Q ss_pred C--------------hhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738 242 N--------------DEHCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 242 ~--------------~~~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
| .....++++++.+.|+|||.|++...
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~ 658 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNN 658 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 2 12345789999999999999985544
No 267
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=97.29 E-value=0.00033 Score=65.68 Aligned_cols=50 Identities=16% Similarity=0.214 Sum_probs=40.0
Q ss_pred HHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738 180 NILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH 232 (333)
Q Consensus 180 ~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~ 232 (333)
.+++.+. ..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.|+++
T Consensus 277 ~~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n 327 (433)
T 1uwv_A 277 RALEWLD-VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQN 327 (433)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHH
T ss_pred HHHHhhc-CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHH
Confidence 4444444 556779999999999999999987 578999999 8888887653
No 268
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=97.28 E-value=0.0003 Score=62.39 Aligned_cols=50 Identities=12% Similarity=0.187 Sum_probs=40.4
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP 231 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 231 (333)
..+++.+. .....+|||||||+|.++..++++ ..+++++|+ +.+++.+++
T Consensus 40 ~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~ 90 (295)
T 3gru_A 40 NKAVESAN-LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANK 90 (295)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHH
T ss_pred HHHHHhcC-CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHH
Confidence 45556555 667789999999999999999998 468999999 778777653
No 269
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=97.25 E-value=0.00035 Score=49.10 Aligned_cols=66 Identities=21% Similarity=0.388 Sum_probs=50.2
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccccccc
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYY 105 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l 105 (333)
.+..|++.|.+.+|+.++|+.+||+++|+ +...+++.|..|...|++... |..++.|.+.+....+
T Consensus 11 ~~~~IL~~L~~~~pg~~~t~~eLA~~Lgv----sr~tV~~~L~~Le~~G~I~~~---g~~~~~W~i~~~~~~~ 76 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKE---AGTPPLWKIAVSTQAW 76 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---SSSSCEEEEC------
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEec---CCCCCeeEEeCcHHhc
Confidence 45668888888765568999999999999 899999999999999999976 2245778777655433
No 270
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=97.17 E-value=0.00027 Score=66.56 Aligned_cols=89 Identities=15% Similarity=0.094 Sum_probs=60.6
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHC-------------CCCeEEEeec-hhHhhhCCCC----------CC
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKY-------------PYIKGINFDL-PHVIEHVPPH----------PC 234 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~~----------~g 234 (333)
..+++.+. .....+|+|.|||+|.++..+.+.. +..+++|+|+ |.+++.|+.+ ..
T Consensus 161 ~~mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~ 239 (445)
T 2okc_A 161 QAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP 239 (445)
T ss_dssp HHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCS
T ss_pred HHHHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCC
Confidence 34444444 4556799999999999999888763 4567999999 7777655421 11
Q ss_pred e---------------EEEccCC------h--------------hHHHHHHHHHHHhCCCCcEEEEEee
Q 035738 235 M---------------WILHDWN------D--------------EHCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 235 v---------------~vLh~~~------~--------------~~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
+ .|+.+.| . ..-...++++.+.|+|||++.++-+
T Consensus 240 i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 240 IVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp EEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 1 3332211 0 0124789999999999999998876
No 271
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=97.15 E-value=0.00037 Score=60.49 Aligned_cols=34 Identities=21% Similarity=0.383 Sum_probs=27.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHH-------CCC-----CeEEEeec-h
Q 035738 190 NIKQLVDVGGGIGVTLQAITTK-------YPY-----IKGINFDL-P 223 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~-------~p~-----~~~~~~D~-~ 223 (333)
+..+|||||+|+|..+..+++. .|+ ++++.++. |
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p 106 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFP 106 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSC
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCc
Confidence 4579999999999999887664 674 68899987 5
No 272
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=97.11 E-value=0.00076 Score=58.52 Aligned_cols=91 Identities=18% Similarity=0.054 Sum_probs=60.4
Q ss_pred hHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC--CC-----------C--------
Q 035738 177 VMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP--HP-----------C-------- 234 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~-----------g-------- 234 (333)
-..++.+.+. +....+|||+|||.|.++..+++..+-..++++|+ ......+.. .. +
T Consensus 78 KL~ei~eK~~-Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~ 156 (282)
T 3gcz_A 78 KLRWMEERGY-VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIP 156 (282)
T ss_dssp HHHHHHHTTS-CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCC
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCC
Confidence 3445666664 77788999999999999999998777666777776 222111111 00 0
Q ss_pred e-EEEccCChh---------HHHHHHHHHHHhCCCC--cEEEEEee
Q 035738 235 M-WILHDWNDE---------HCLKLLKNCYKSIPED--GKVIAVEL 268 (333)
Q Consensus 235 v-~vLh~~~~~---------~~~~lL~~~~~~L~pg--G~l~i~e~ 268 (333)
+ -||++..+. ....+|+-+.+.|+|| |.+++--+
T Consensus 157 ~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF 202 (282)
T 3gcz_A 157 GDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVL 202 (282)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred cCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEe
Confidence 1 666765422 2235788889999999 98877443
No 273
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=97.09 E-value=0.00034 Score=47.33 Aligned_cols=55 Identities=15% Similarity=0.298 Sum_probs=45.7
Q ss_pred HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccc
Q 035738 34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLN 99 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t 99 (333)
+..|++.|.+.+ .++|..|||+.+|+ +...+.+.+..|...|++... ..+.|+++
T Consensus 12 ~~~IL~~L~~~~--~~~s~~eLA~~lgl----sr~tv~~~l~~L~~~G~I~~~-----~~G~y~lg 66 (67)
T 2heo_A 12 EQKILQVLSDDG--GPVAIFQLVKKCQV----PKKTLNQVLYRLKKEDRVSSP-----SPKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHC--SCEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEEE-----ETTEEEEC
T ss_pred HHHHHHHHHHcC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEecC-----CCceEeeC
Confidence 556888888653 48999999999999 999999999999999999865 24667653
No 274
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=97.08 E-value=0.00027 Score=64.94 Aligned_cols=77 Identities=16% Similarity=0.099 Sum_probs=57.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---C---------------C---e------------
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---P---------------C---M------------ 235 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~---------------g---v------------ 235 (333)
...+|||+|||+|..+..++++.+..+++++|+ +..++.++++ - + +
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 467899999999999999999988889999999 7877666532 1 2 2
Q ss_pred -------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 035738 236 -------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVE 267 (333)
Q Consensus 236 -------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e 267 (333)
.|+-+-+ -....+|..+.+.|+|||.+++.-
T Consensus 127 ~~~~~fD~I~lDP~-~~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDPF-GSPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECCS-SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCEEEeCCC-CCHHHHHHHHHHhcCCCCEEEEEe
Confidence 2221111 112478999999999999877764
No 275
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=97.08 E-value=0.0005 Score=64.19 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=34.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP 231 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 231 (333)
...+|||+|||+|.++..+++. ..+++++|+ +.+++.|++
T Consensus 290 ~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~ 330 (425)
T 2jjq_A 290 EGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARR 330 (425)
T ss_dssp CSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHH
Confidence 5679999999999999999886 358999999 888887764
No 276
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=96.96 E-value=0.00059 Score=47.50 Aligned_cols=62 Identities=23% Similarity=0.377 Sum_probs=49.4
Q ss_pred HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccc
Q 035738 32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNS 100 (333)
Q Consensus 32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~ 100 (333)
-.+..|++.|.+.+.+.++|+.|||+++|+ +...+.+.|+.|...|++... |..++.|.+++
T Consensus 14 ~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgv----s~~tV~~~L~~L~~~G~I~~~---g~~~~~W~i~~ 75 (77)
T 1qgp_A 14 DQEQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKE---AGTPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHHHCSSSCEEHHHHHHHHCC----CHHHHHHHHHHHHHHTSEEEE---CSSSCEEEECC
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEec---CCCCCceEecC
Confidence 345678888888743348999999999999 899999999999999999886 22356676654
No 277
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=96.95 E-value=0.00037 Score=52.14 Aligned_cols=63 Identities=19% Similarity=0.271 Sum_probs=54.2
Q ss_pred HhChhhHhhhcCCCCCCCHHHHHHHh--CCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccccccC
Q 035738 34 ELGIFEIIDKAGPGAKLSASDIAAQL--TTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPN 108 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~ela~~~--g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~~~ 108 (333)
+..|++.|.+. |+.|+.+||+.+ |+ .+..+++-|+.|...|+|+.. ..+.|++|+.+..++..
T Consensus 15 d~~IL~~L~~~---g~~s~~eLA~~l~~gi----S~~aVs~rL~~Le~~GLV~~~-----~rg~Y~LT~~G~~~l~~ 79 (111)
T 3b73_A 15 DDRILEIIHEE---GNGSPKELEDRDEIRI----SKSSVSRRLKKLADHDLLQPL-----ANGVYVITEEGEAYLNG 79 (111)
T ss_dssp HHHHHHHHHHH---SCBCHHHHHTSTTCCS----CHHHHHHHHHHHHHTTSEEEC-----STTCEEECHHHHHHHTT
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEec-----CCceEEECchHHHHHHH
Confidence 46688889875 599999999999 99 999999999999999999986 23489999999866654
No 278
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=96.92 E-value=0.00068 Score=47.23 Aligned_cols=62 Identities=11% Similarity=0.110 Sum_probs=50.7
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcc-cHHHHHHHHhcccceeeeccCCCccccccccccccc
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPM-MLDRILRLLASYSVVECSLDASGARRLYSLNSVSKY 104 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~-~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~ 104 (333)
.+-.|++.|... ||.|+.+||+.+|+ ... .+++.|..|...|+|.+. ..| ...|.+|+.+..
T Consensus 12 ~~~~IL~~Lk~~---g~~ta~eiA~~Lgi----t~~~aVr~hL~~Le~eGlV~~~-~~g--RP~w~LT~~g~~ 74 (79)
T 1xmk_A 12 IKEKICDYLFNV---SDSSALNLAKNIGL----TKARDINAVLIDMERQGDVYRQ-GTT--PPIWHLTDKKRE 74 (79)
T ss_dssp HHHHHHHHHHHT---CCEEHHHHHHHHCG----GGHHHHHHHHHHHHHTTSEEEE-CSS--SCEEEECHHHHT
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHcCC----CcHHHHHHHHHHHHHCCCEEec-CCC--CCCeEeCHhHHh
Confidence 355678888887 59999999999999 888 999999999999999865 122 338898887753
No 279
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=96.91 E-value=0.001 Score=60.60 Aligned_cols=41 Identities=22% Similarity=0.183 Sum_probs=35.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPP 231 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 231 (333)
++.+||-||+|.|..+.++++. |.-+++.+|+ |.|++.+++
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~ 246 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKK 246 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHH
T ss_pred CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHh
Confidence 4689999999999999999974 5578999999 889988765
No 280
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=96.89 E-value=0.00086 Score=48.70 Aligned_cols=61 Identities=18% Similarity=0.221 Sum_probs=50.8
Q ss_pred HHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccccc
Q 035738 28 AMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSK 103 (333)
Q Consensus 28 ~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~ 103 (333)
++..-.++.|++.| . ++.|..|||+.+|+ ++..+.+.|+.|...|++.+. . +.|.+++.+.
T Consensus 27 ~l~~~~r~~Il~~L-~----~~~~~~eLa~~l~i----s~~tv~~~L~~L~~~Glv~~~-----~-g~y~l~~~g~ 87 (96)
T 1y0u_A 27 AVTNPVRRKILRML-D----KGRSEEEIMQTLSL----SKKQLDYHLKVLEAGFCIERV-----G-ERWVVTDAGK 87 (96)
T ss_dssp HHSCHHHHHHHHHH-H----TTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----T-TEEEECTTTC
T ss_pred HhCCHHHHHHHHHH-c----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE-----C-CEEEECCCch
Confidence 44445567788888 5 48999999999999 999999999999999999987 2 4788877654
No 281
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=96.70 E-value=0.0072 Score=52.79 Aligned_cols=89 Identities=16% Similarity=0.103 Sum_probs=57.8
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeech-hHhhhCC-------------------CCCC--e-
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLP-HVIEHVP-------------------PHPC--M- 235 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~-------------------~~~g--v- 235 (333)
.++.+. .-+.+..+|||+||++|.++..+++..+-..++++|+. ....... ...+ +
T Consensus 71 ~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~D 149 (300)
T 3eld_A 71 RWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSD 149 (300)
T ss_dssp HHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCS
T ss_pred HHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcC
Confidence 344444 33567899999999999999999987665566777762 2111100 0011 1
Q ss_pred EEEccCChh---------HHHHHHHHHHHhCCCC-cEEEEEee
Q 035738 236 WILHDWNDE---------HCLKLLKNCYKSIPED-GKVIAVEL 268 (333)
Q Consensus 236 ~vLh~~~~~---------~~~~lL~~~~~~L~pg-G~l~i~e~ 268 (333)
.|+++..+. ....+|+-+.+.|+|| |.+++--+
T Consensus 150 lVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF 192 (300)
T 3eld_A 150 TLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVL 192 (300)
T ss_dssp EEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEES
T ss_pred EEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEec
Confidence 666665432 1246788899999999 99887543
No 282
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=96.63 E-value=0.0021 Score=45.07 Aligned_cols=45 Identities=22% Similarity=0.244 Sum_probs=39.5
Q ss_pred hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
..|++.|.+. ++.|..|||+.+|+ ++..+++.|+.|...|++.+.
T Consensus 3 ~~Il~~L~~~---~~~s~~eLa~~lgv----s~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 3 NEILEFLNRH---NGGKTAEIAEALAV----TDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHHS---CCCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 3467777765 48999999999999 999999999999999999965
No 283
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=96.53 E-value=0.0038 Score=62.05 Aligned_cols=54 Identities=17% Similarity=0.056 Sum_probs=41.1
Q ss_pred HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHH------------------------------------------CCCC
Q 035738 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTK------------------------------------------YPYI 215 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~------------------------------------------~p~~ 215 (333)
+..++.... +....+|+|.+||+|.++.+.+.. .++.
T Consensus 179 Aa~ll~~~~-~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~ 257 (703)
T 3v97_A 179 AAAIVMRSG-WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSS 257 (703)
T ss_dssp HHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHhhC-CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCc
Confidence 344555444 777889999999999999987754 2346
Q ss_pred eEEEeec-hhHhhhCCCC
Q 035738 216 KGINFDL-PHVIEHVPPH 232 (333)
Q Consensus 216 ~~~~~D~-~~~~~~a~~~ 232 (333)
+++++|+ +.+++.|+.+
T Consensus 258 ~i~G~Did~~av~~A~~N 275 (703)
T 3v97_A 258 HFYGSDSDARVIQRARTN 275 (703)
T ss_dssp CEEEEESCHHHHHHHHHH
T ss_pred cEEEEECCHHHHHHHHHH
Confidence 8999999 8899887753
No 284
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=96.52 E-value=0.0031 Score=46.18 Aligned_cols=63 Identities=16% Similarity=0.230 Sum_probs=48.1
Q ss_pred HHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccc
Q 035738 28 AMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNS 100 (333)
Q Consensus 28 ~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~ 100 (333)
++.--.++.|+..|.+ |+.|+.|||+.+|+ ++..+.+.|+.|...|++.... .| ....|++|+
T Consensus 19 ~l~~~~r~~Il~~L~~----~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~~-~g-~~~~y~l~~ 81 (102)
T 3pqk_A 19 TLSHPVRLMLVCTLVE----GEFSVGELEQQIGI----GQPTLSQQLGVLRESGIVETRR-NI-KQIFYRLTE 81 (102)
T ss_dssp HHCSHHHHHHHHHHHT----CCBCHHHHHHHHTC----CTTHHHHHHHHHHHTTSEEEEC-SS-SCCEEEECS
T ss_pred HcCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEE-eC-CEEEEEECc
Confidence 3444456677788866 48999999999999 9999999999999999999863 12 133455553
No 285
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=96.44 E-value=0.002 Score=56.53 Aligned_cols=58 Identities=14% Similarity=0.244 Sum_probs=47.3
Q ss_pred HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccc
Q 035738 34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVS 102 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~ 102 (333)
-+.|++.|...+ ++.|+.|||+++|+ +..-+.|+|+.|...|||.++ .++.|++++..
T Consensus 32 al~IL~~l~~~~--~~ltl~eia~~lgl----~ksTv~RlL~tL~~~G~v~~~-----~~~~Y~LG~~~ 89 (275)
T 3mq0_A 32 AVRILDLVAGSP--RDLTAAELTRFLDL----PKSSAHGLLAVMTELDLLARS-----ADGTLRIGPHS 89 (275)
T ss_dssp HHHHHHHHHHCS--SCEEHHHHHHHHTC----C--CHHHHHHHHHHTTSEEEC-----TTSEEEECTHH
T ss_pred HHHHHHHHhhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC-----CCCcEEehHHH
Confidence 355888888754 47999999999999 999999999999999999987 24679988654
No 286
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=96.34 E-value=0.0028 Score=60.98 Aligned_cols=89 Identities=12% Similarity=0.087 Sum_probs=58.9
Q ss_pred HHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCC------------------CCeEEEeec-hhHhhhCCCC-------
Q 035738 179 SNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYP------------------YIKGINFDL-PHVIEHVPPH------- 232 (333)
Q Consensus 179 ~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p------------------~~~~~~~D~-~~~~~~a~~~------- 232 (333)
..+++.+. .....+|+|.+||+|.++..+.+... ..+++|+|+ +.+++.|+.+
T Consensus 159 ~~mv~~l~-p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~ 237 (541)
T 2ar0_A 159 KTIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE 237 (541)
T ss_dssp HHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHhc-cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCC
Confidence 33444444 45567999999999999998876531 247899999 7777655421
Q ss_pred ------CCe-----------------EEEccCC-----------------hhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738 233 ------PCM-----------------WILHDWN-----------------DEHCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 233 ------~gv-----------------~vLh~~~-----------------~~~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
.++ .|+-+.| ...-...++++.+.|+|||++.++-+
T Consensus 238 ~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 238 GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp CBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 111 3333221 11123689999999999999988865
No 287
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=96.32 E-value=0.0093 Score=46.20 Aligned_cols=78 Identities=15% Similarity=0.181 Sum_probs=54.9
Q ss_pred CCcCchhhhHHHHHHHHHHhhhhHHHHHH-----HHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHH
Q 035738 2 DSIVDGERDQSFAYANQLARGIVLPMAMQ-----AVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRL 76 (333)
Q Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~-----~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~ 76 (333)
+.-++.+-...+..+.+.....+....-. ...+..++..|... ++.|..+||+.+++ ++..+.+.++.
T Consensus 2 ~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~lt~~~~~vL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~ 74 (142)
T 3ech_A 2 NYPVNPDLMPALMAVFQHVRTRIQSELDCQRLDLTPPDVHVLKLIDEQ---RGLNLQDLGRQMCR----DKALITRKIRE 74 (142)
T ss_dssp CCCCCTTHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHT---TTCCHHHHHHHHC-------CHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhC---CCcCHHHHHHHhCC----CHHHHHHHHHH
Confidence 33344455555666666655554443333 35677788888876 48999999999999 99999999999
Q ss_pred Hhcccceeee
Q 035738 77 LASYSVVECS 86 (333)
Q Consensus 77 L~~~g~l~~~ 86 (333)
|...|++.+.
T Consensus 75 L~~~Glv~r~ 84 (142)
T 3ech_A 75 LEGRNLVRRE 84 (142)
T ss_dssp HHHTTSEEC-
T ss_pred HHHCCCEeec
Confidence 9999999986
No 288
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=96.31 E-value=0.0017 Score=56.29 Aligned_cols=43 Identities=14% Similarity=0.169 Sum_probs=35.5
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-h-------hHhhhCCCC
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-P-------HVIEHVPPH 232 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~-------~~~~~a~~~ 232 (333)
.....+|||+|||+|..+..+++. ..+++++|+ | .+++.++++
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n 131 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLN 131 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHS
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhH
Confidence 345578999999999999999986 468999999 8 777777654
No 289
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=96.24 E-value=0.0034 Score=43.50 Aligned_cols=45 Identities=24% Similarity=0.262 Sum_probs=38.5
Q ss_pred hhhHhhhc-----CCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738 37 IFEIIDKA-----GPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 37 lfd~L~~~-----~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
|++.|.+. | +|.|+.|||+++|+ .+..+++-|..|...|++.+.+
T Consensus 9 IL~~I~~~i~~~~g--~~psv~EIa~~lgv----S~~TVrr~L~~Le~kG~I~R~~ 58 (77)
T 2jt1_A 9 IISIVQERQNMDDG--APVKTRDIADAAGL----SIYQVRLYLEQLHDVGVLEKVN 58 (77)
T ss_dssp HHHHHHHHHHHHTT--SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEES
T ss_pred HHHHHHHHHhhccC--CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEecC
Confidence 45555543 3 59999999999999 8999999999999999999973
No 290
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=96.24 E-value=0.004 Score=54.26 Aligned_cols=59 Identities=15% Similarity=0.133 Sum_probs=46.4
Q ss_pred HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC--CCeEEEc
Q 035738 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH--PCMWILH 239 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~gv~vLh 239 (333)
...+++.+. ..+...+||.+||.|.++..++++ +.+++++|. |.+++.+++. ..+.+.|
T Consensus 11 l~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~ 72 (285)
T 1wg8_A 11 YQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQ 72 (285)
T ss_dssp HHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEE
T ss_pred HHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEE
Confidence 456777676 777889999999999999999998 779999999 8888766542 2454444
No 291
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=96.23 E-value=0.0026 Score=46.19 Aligned_cols=51 Identities=24% Similarity=0.303 Sum_probs=44.5
Q ss_pred HHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 28 AMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 28 ~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
++.--.++.|+..|.+ |+.|+.|||+.+|+ ++..+.+.|+.|...|++.+.
T Consensus 19 ~l~~~~r~~Il~~L~~----~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~ 69 (98)
T 3jth_A 19 AMANERRLQILCMLHN----QELSVGELCAKLQL----SQSALSQHLAWLRRDGLVTTR 69 (98)
T ss_dssp HHCSHHHHHHHHHTTT----SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HcCCHHHHHHHHHHhc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 4444567778888887 48999999999999 999999999999999999986
No 292
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=96.03 E-value=0.0044 Score=44.84 Aligned_cols=51 Identities=12% Similarity=0.124 Sum_probs=43.8
Q ss_pred HHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 29 MQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 29 l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
+..-.++.|+..|... ++.|..|||+.+|+ ++..+.+.|+.|...|++.+.
T Consensus 21 l~~~~~~~il~~l~~~---~~~s~~ela~~l~i----s~~tvs~~l~~L~~~glv~~~ 71 (99)
T 3cuo_A 21 MSHPKRLLILCMLSGS---PGTSAGELTRITGL----SASATSQHLARMRDEGLIDSQ 71 (99)
T ss_dssp HCSHHHHHHHHHHTTC---CSEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred hCChHHHHHHHHHHhC---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 3344567788888764 48999999999999 999999999999999999986
No 293
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=95.99 E-value=0.0067 Score=42.11 Aligned_cols=43 Identities=19% Similarity=0.307 Sum_probs=39.7
Q ss_pred hhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 37 IFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 37 lfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
|.+.|.+. |.++++|||+.+++ ++.-++|-|+.|...|++.+.
T Consensus 7 Il~~L~~~---g~vsv~eLa~~l~V----S~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALR---GRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHS---CSBCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHc---CCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 56778876 59999999999999 999999999999999999987
No 294
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=95.98 E-value=0.01 Score=45.49 Aligned_cols=46 Identities=22% Similarity=0.190 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccc
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNS 100 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~ 100 (333)
++.|.++||+.+|+ ++..++++|+.|...|++.... | ..+.|.++.
T Consensus 25 ~~~s~~ela~~~~i----~~~~v~~il~~L~~~Glv~~~~--g-~~ggy~L~~ 70 (129)
T 2y75_A 25 GPTSLKSIAQTNNL----SEHYLEQLVSPLRNAGLVKSIR--G-AYGGYVLGS 70 (129)
T ss_dssp CCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEC-------CCEEESS
T ss_pred CcCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEecC--C-CCCceEeCC
Confidence 58999999999999 9999999999999999998752 1 235677654
No 295
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=95.97 E-value=0.0042 Score=43.38 Aligned_cols=60 Identities=13% Similarity=0.087 Sum_probs=47.3
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccccc
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSK 103 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~ 103 (333)
....|.+.|.+. +.|+.|||+++|+ ....+++.|..|...|++.... ..+..|+++..+.
T Consensus 18 ~~~~IL~lL~~~----g~sa~eLAk~Lgi----Sk~aVr~~L~~Le~eG~I~~~~---~~PP~W~~~~~~~ 77 (82)
T 1oyi_A 18 IVCEAIKTIGIE----GATAAQLTRQLNM----EKREVNKALYDLQRSAMVYSSD---DIPPRWFMTTEAD 77 (82)
T ss_dssp HHHHHHHHHSSS----TEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEECS---SSSCEEESCC---
T ss_pred HHHHHHHHHHHc----CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeCC---CCCCcceeccCcc
Confidence 455677888864 4999999999999 9999999999999999999862 2467788776543
No 296
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=95.94 E-value=0.0056 Score=46.53 Aligned_cols=53 Identities=23% Similarity=0.139 Sum_probs=45.5
Q ss_pred HHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 27 MAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 27 ~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
.++.--.++.|+..|... ++.|+.|||+.+|+ ++..+.+.|+.|...|++...
T Consensus 37 ~al~~~~rl~IL~~L~~~---~~~s~~eLa~~l~i----s~stvs~~L~~L~~~Glv~~~ 89 (122)
T 1u2w_A 37 KAIADENRAKITYALCQD---EELCVCDIANILGV----TIANASHHLRTLYKQGVVNFR 89 (122)
T ss_dssp HHHHSHHHHHHHHHHHHS---SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC
T ss_pred HHhCCHHHHHHHHHHHHC---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 344445677899999854 58999999999999 999999999999999999975
No 297
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=95.93 E-value=0.0062 Score=56.02 Aligned_cols=79 Identities=16% Similarity=0.214 Sum_probs=56.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hhHhhhCCCC------CC--eEE--------Ec-cCC--------
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPY-IKGINFDL-PHVIEHVPPH------PC--MWI--------LH-DWN-------- 242 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~g--v~v--------Lh-~~~-------- 242 (333)
+..+|||++||+|.++..++.+.++ .+++.+|+ +..++.++++ .+ +.+ +. .+.
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 4679999999999999999998765 57899999 8888777653 22 311 11 110
Q ss_pred hh--HHHHHHHHHHHhCCCCcEEEEEee
Q 035738 243 DE--HCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 243 ~~--~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
|+ ....++..+.+.|+|||.|++.-.
T Consensus 132 DP~g~~~~~l~~a~~~Lk~gGll~~t~t 159 (392)
T 3axs_A 132 DPFGTPVPFIESVALSMKRGGILSLTAT 159 (392)
T ss_dssp CCSSCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCcCHHHHHHHHHHHhCCCCEEEEEec
Confidence 11 013688999999999997777664
No 298
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=95.92 E-value=0.0033 Score=47.46 Aligned_cols=64 Identities=9% Similarity=0.141 Sum_probs=50.6
Q ss_pred HHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccc
Q 035738 27 MAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNS 100 (333)
Q Consensus 27 ~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~ 100 (333)
.+|.--.++.|+..|.+ |+.|+.|||+.+|+ ++..+.+.|+.|...|+|..... | ....|++++
T Consensus 13 ~al~~~~R~~Il~~L~~----~~~~~~eLa~~l~i----s~~tvs~hL~~L~~~GlV~~~~~-g-r~~~y~l~~ 76 (118)
T 3f6o_A 13 QALADPTRRAVLGRLSR----GPATVSELAKPFDM----ALPSFMKHIHFLEDSGWIRTHKQ-G-RVRTCAIEK 76 (118)
T ss_dssp HHHTSHHHHHHHHHHHT----CCEEHHHHHTTCCS----CHHHHHHHHHHHHHTTSEEEEEE-T-TEEEEEECS
T ss_pred HHhCCHHHHHHHHHHHh----CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEEec-C-CEEEEEECH
Confidence 35555677888888886 58999999999999 99999999999999999987631 1 133466654
No 299
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=95.89 E-value=0.0067 Score=44.87 Aligned_cols=76 Identities=14% Similarity=0.176 Sum_probs=52.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHh-CCCCCCCcccHHHHHHHHhcccceeeeccC-C
Q 035738 13 FAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQL-TTKNKDAPMMLDRILRLLASYSVVECSLDA-S 90 (333)
Q Consensus 13 ~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~-g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~-~ 90 (333)
...+.+++.+.|...+| ..|.. |+.+..||++.+ |+ ++..+.+.|+.|...|+|++.... +
T Consensus 4 ~~~~l~~l~~~~~~~IL---------~~L~~----~~~~~~eLa~~l~~i----s~~tls~~L~~Le~~GlI~r~~~~~d 66 (107)
T 2hzt_A 4 VEATLEVIGGKWKXVIL---------XHLTH----GKKRTSELKRLMPNI----TQKMLTQQLRELEADGVINRIVYNQV 66 (107)
T ss_dssp HHHHHHHHCSTTHHHHH---------HHHTT----CCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECSS
T ss_pred HHHHHHHHcCccHHHHH---------HHHHh----CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEeecCCC
Confidence 34455555555554443 34443 489999999999 99 999999999999999999987421 1
Q ss_pred Ccccccccccccccc
Q 035738 91 GARRLYSLNSVSKYY 105 (333)
Q Consensus 91 ~~~~~y~~t~~~~~l 105 (333)
+..-.|.+|+.+..+
T Consensus 67 ~r~~~y~LT~~G~~l 81 (107)
T 2hzt_A 67 PPKVEYELSEYGRSL 81 (107)
T ss_dssp SCEEEEEECTTGGGG
T ss_pred CCeEEEEECccHHHH
Confidence 112347777766443
No 300
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=95.89 E-value=0.0042 Score=53.23 Aligned_cols=59 Identities=19% Similarity=0.149 Sum_probs=48.1
Q ss_pred hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccccc
Q 035738 35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSK 103 (333)
Q Consensus 35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~ 103 (333)
+.|++.|.+.+ ++.|+.|||+++|+ +..-+.|+|+.|...|++.+++ ++++|++++..-
T Consensus 9 l~iL~~l~~~~--~~~s~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~~----~~~~Y~lg~~~~ 67 (241)
T 2xrn_A 9 ASIMRALGSHP--HGLSLAAIAQLVGL----PRSTVQRIINALEEEFLVEALG----PAGGFRLGPALG 67 (241)
T ss_dssp HHHHHHHHTCT--TCEEHHHHHHHTTS----CHHHHHHHHHHHHTTTSEEECG----GGCEEEECSHHH
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC----CCCeEEECHHHH
Confidence 45677777643 47999999999999 9999999999999999999862 247898876543
No 301
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=95.88 E-value=0.0046 Score=46.10 Aligned_cols=61 Identities=20% Similarity=0.198 Sum_probs=46.3
Q ss_pred HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccc
Q 035738 32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVS 102 (333)
Q Consensus 32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~ 102 (333)
-.++.|+..|.. ++.|..|||+.+|+ ++..+.+.|+.|...|++.+... | ....|.+|+.+
T Consensus 21 ~~r~~IL~~L~~----~~~~~~ela~~l~i----s~~tv~~~l~~L~~~gli~~~~~-g-r~~~y~l~~~~ 81 (114)
T 2oqg_A 21 ETRWEILTELGR----ADQSASSLATRLPV----SRQAIAKHLNALQACGLVESVKV-G-REIRYRALGAE 81 (114)
T ss_dssp HHHHHHHHHHHH----SCBCHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEEEE-T-TEEEEEECSHH
T ss_pred hHHHHHHHHHHc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeEEec-C-CEEEEEechHH
Confidence 345667778844 48999999999999 99999999999999999997621 1 12236665543
No 302
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=95.87 E-value=0.0064 Score=43.07 Aligned_cols=43 Identities=16% Similarity=0.321 Sum_probs=39.7
Q ss_pred hhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 37 IFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 37 lfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
|.+.|.+. |.++++|||+.+++ ++.-++|.|+.|...|++.+.
T Consensus 7 Il~~L~~~---g~vsv~eLA~~l~V----S~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 7 VRDMLALQ---GRMEAKQLSARLQT----PQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHS---CSEEHHHHHHHTTC----CHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHc---CCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 66778876 59999999999999 999999999999999999987
No 303
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=95.86 E-value=0.0026 Score=55.22 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=47.9
Q ss_pred hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccc
Q 035738 35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVS 102 (333)
Q Consensus 35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~ 102 (333)
+.|++.|.+.+ ++.|+.|||+++|+ +..-+.|+|+.|...|++.+++ +.++|++++..
T Consensus 9 l~IL~~l~~~~--~~lsl~eia~~lgl----~ksT~~RlL~tL~~~G~v~~~~----~~~~Y~lG~~~ 66 (260)
T 3r4k_A 9 LTLLTYFNHGR--LEIGLSDLTRLSGM----NKATVYRLMSELQEAGFVEQVE----GARSYRLGPQV 66 (260)
T ss_dssp HHHHTTCBTTB--SEEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEECS----SSSEEEECTTH
T ss_pred HHHHHHHhhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC----CCCcEEcCHHH
Confidence 44677777532 58999999999999 9999999999999999999872 34789987654
No 304
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=95.81 E-value=0.0055 Score=44.37 Aligned_cols=48 Identities=10% Similarity=0.185 Sum_probs=44.0
Q ss_pred CCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccccccccc
Q 035738 50 LSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVP 107 (333)
Q Consensus 50 ~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~~ 107 (333)
.+..+||..+|+ +++.++..++.|...|++.+. .+.|.+|+.+..++.
T Consensus 21 ~~~t~La~~~~l----s~~~~~~~l~~L~~~GLI~~~------~~~~~LT~kG~~~l~ 68 (95)
T 1r7j_A 21 SPKTRIMYGANL----SYALTGRYIKMLMDLEIIRQE------GKQYMLTKKGEELLE 68 (95)
T ss_dssp BCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE------TTEEEECHHHHHHHH
T ss_pred CCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEE------CCeeEEChhHHHHHH
Confidence 899999999999 999999999999999999997 567999999987664
No 305
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=95.76 E-value=0.0069 Score=52.14 Aligned_cols=57 Identities=18% Similarity=0.174 Sum_probs=47.5
Q ss_pred hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccc
Q 035738 35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVS 102 (333)
Q Consensus 35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~ 102 (333)
+.|++.|.+.+ ++.|+.|||+++|+ +..-+.|+|+.|...|++.++ .++.|++++..
T Consensus 11 l~iL~~l~~~~--~~~~~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~-----~~~~Y~lg~~~ 67 (249)
T 1mkm_A 11 FEILDFIVKNP--GDVSVSEIAEKFNM----SVSNAYKYMVVLEEKGFVLRK-----KDKRYVPGYKL 67 (249)
T ss_dssp HHHHHHHHHCS--SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEC-----TTSCEEECTHH
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEC-----CCCcEEECHHH
Confidence 45677777643 47999999999999 999999999999999999986 25788887654
No 306
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=95.76 E-value=0.015 Score=56.89 Aligned_cols=66 Identities=12% Similarity=0.039 Sum_probs=41.7
Q ss_pred hhhhcCCchhHHHHHHHHhhhhhhhHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHH----C---------CCCeEEE
Q 035738 153 FEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTK----Y---------PYIKGIN 219 (333)
Q Consensus 153 ~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~----~---------p~~~~~~ 219 (333)
|+.+++++-+...|.+|+... +.+....-.+...|+|||||+|-++...+++ . ...++++
T Consensus 379 Ye~fekD~vRy~~Y~~AI~~a-------l~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyA 451 (745)
T 3ua3_A 379 YNTFEQDQIKYDVYGEAVVGA-------LKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYI 451 (745)
T ss_dssp HHHHHHCHHHHHHHHHHHHHH-------HHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEE
T ss_pred HHHHcCChhhHHHHHHHHHHH-------HHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEE
Confidence 666777887777887777542 2222221124568999999999996543222 2 3458899
Q ss_pred eec-hhH
Q 035738 220 FDL-PHV 225 (333)
Q Consensus 220 ~D~-~~~ 225 (333)
+|- |.+
T Consensus 452 VEknp~A 458 (745)
T 3ua3_A 452 VEKNPNA 458 (745)
T ss_dssp EECCHHH
T ss_pred EeCChHH
Confidence 988 543
No 307
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=95.74 E-value=0.0051 Score=44.55 Aligned_cols=53 Identities=25% Similarity=0.260 Sum_probs=45.8
Q ss_pred HHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 27 MAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 27 ~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
.++..-.++.|+..|... ++.|..+||+.+|+ ++..+.+.|+.|...|++.+.
T Consensus 11 ~~l~~~~~~~iL~~L~~~---~~~~~~ela~~l~i----s~~tvs~~l~~L~~~gli~~~ 63 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLPR---RKAPFSQIQKVLDL----TPGNLDSHIRVLERNGLVKTY 63 (100)
T ss_dssp HHHHSHHHHHHHHHHHHH---SEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred cccCChHHHHHHHHHHhc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 455566778888888754 48999999999999 999999999999999999965
No 308
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=95.69 E-value=0.0046 Score=60.27 Aligned_cols=104 Identities=17% Similarity=0.194 Sum_probs=61.9
Q ss_pred hhhhcCCchhHHHHHHHHhhhhhhhHHHHHhhcc---CCCCCCeEEEEcCCccHHHHHHHHH----CCCCeEEEeechhH
Q 035738 153 FEYAGLDPGFNKHFNTVMYNYTSLVMSNILESYK---GFDNIKQLVDVGGGIGVTLQAITTK----YPYIKGINFDLPHV 225 (333)
Q Consensus 153 ~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~---~~~~~~~vlDVGgG~G~~~~~l~~~----~p~~~~~~~D~~~~ 225 (333)
|+.+++++-....|.+|+.. .+.+..+ ...+...|+|||||+|-+....+++ ...++++.++-..+
T Consensus 324 YevFEkD~vKy~~Ye~AI~~-------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~ 396 (637)
T 4gqb_A 324 YEVFEKDPIKYSQYQQAIYK-------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN 396 (637)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH
T ss_pred hhhhcCChhhHHHHHHHHHH-------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH
Confidence 67778888888888887643 2222221 1234568999999999885443332 33457888988445
Q ss_pred hhhCCCC------CC-----------------e-EEEccC-----ChhHHHHHHHHHHHhCCCCcEE
Q 035738 226 IEHVPPH------PC-----------------M-WILHDW-----NDEHCLKLLKNCYKSIPEDGKV 263 (333)
Q Consensus 226 ~~~a~~~------~g-----------------v-~vLh~~-----~~~~~~~lL~~~~~~L~pgG~l 263 (333)
...+++. .+ | -+...| ..+-...+|-...+.|||||.+
T Consensus 397 A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGim 463 (637)
T 4gqb_A 397 AVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVS 463 (637)
T ss_dssp HHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEE
T ss_pred HHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEE
Confidence 5444431 00 1 111211 1223346777778899999875
No 309
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=95.68 E-value=0.0099 Score=54.92 Aligned_cols=41 Identities=22% Similarity=0.387 Sum_probs=35.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH 232 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~ 232 (333)
.+.+|||+|||+|..+..+++.. .+++++|+ +.+++.++++
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~g--~~V~~VD~s~~~l~~Ar~N 134 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSKA--SQGIYIERNDETAVAARHN 134 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTTC--SEEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHhcC--CEEEEEECCHHHHHHHHHh
Confidence 46899999999999999888764 58999999 8888888754
No 310
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=95.65 E-value=0.0063 Score=45.93 Aligned_cols=51 Identities=16% Similarity=0.111 Sum_probs=43.6
Q ss_pred HHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 28 AMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 28 ~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
++.--.++.|+..|.+ ++.++.|||+.+|+ ++..+.+.|+.|...|++...
T Consensus 17 aL~~~~r~~IL~~L~~----~~~~~~eLa~~lgi----s~stvs~~L~~L~~~GlV~~~ 67 (118)
T 2jsc_A 17 ALADPTRCRILVALLD----GVCYPGQLAAHLGL----TRSNVSNHLSCLRGCGLVVAT 67 (118)
T ss_dssp HHSSHHHHHHHHHHHT----TCCSTTTHHHHHSS----CHHHHHHHHHHHTTTTSEEEE
T ss_pred HhCCHHHHHHHHHHHc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEE
Confidence 4444556778888875 48999999999999 999999999999999999976
No 311
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=95.63 E-value=0.0092 Score=45.93 Aligned_cols=79 Identities=15% Similarity=0.147 Sum_probs=59.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHh-CCCCCCCcccHHHHHHHHhcccceeeecc-C
Q 035738 12 SFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQL-TTKNKDAPMMLDRILRLLASYSVVECSLD-A 89 (333)
Q Consensus 12 ~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~-g~~~~~~~~~l~~lL~~L~~~g~l~~~~~-~ 89 (333)
+.....+++.+-|...+|.. |.. |+.+..||++.+ |+ ++..+.+.|+.|...|+|++... +
T Consensus 15 pi~~~l~~lg~kW~l~IL~~---------L~~----g~~rf~eL~~~l~gI----s~~~Ls~~L~~Le~~GLV~R~~~~~ 77 (131)
T 4a5n_A 15 PVEFTLDVIGGKWKGILFYH---------MID----GKKRFNEFRRICPSI----TQRMLTLQLRELEADGIVHREVYHQ 77 (131)
T ss_dssp HHHHHHHHHCSSSHHHHHHH---------HTT----SCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECS
T ss_pred cHHHHHHHHcCcCHHHHHHH---------Hhc----CCcCHHHHHHHhccc----CHHHHHHHHHHHHHCCCEEEEecCC
Confidence 45666777777776655543 333 589999999999 99 99999999999999999998742 1
Q ss_pred CCcccccccccccccccc
Q 035738 90 SGARRLYSLNSVSKYYVP 107 (333)
Q Consensus 90 ~~~~~~y~~t~~~~~l~~ 107 (333)
.+....|++|+.+..+..
T Consensus 78 d~r~v~y~LT~~G~~l~~ 95 (131)
T 4a5n_A 78 VPPKVEYSLTEFGRTLEP 95 (131)
T ss_dssp SSCEEEEEECTTGGGGHH
T ss_pred CCCeEEEEECHhHHHHHH
Confidence 112345888888876653
No 312
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=95.60 E-value=0.0075 Score=44.51 Aligned_cols=48 Identities=23% Similarity=0.334 Sum_probs=41.6
Q ss_pred HHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 31 AVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 31 ~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
.-.++.|+..|.+ ++.|+.|||+.+|+ ++..+.+.|+.|...|++...
T Consensus 25 ~~~r~~IL~~L~~----~~~~~~ela~~l~i----s~stvs~~L~~L~~~Glv~~~ 72 (106)
T 1r1u_A 25 DYNRIRIMELLSV----SEASVGHISHQLNL----SQSNVSHQLKLLKSVHLVKAK 72 (106)
T ss_dssp SHHHHHHHHHHHH----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 3455667777875 48999999999999 999999999999999999976
No 313
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=95.58 E-value=0.0038 Score=46.33 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=39.9
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
.++.|+..|.+ ++.|+.|||+.+|+ ++..+.+.|+.|...|++...
T Consensus 26 ~r~~IL~~L~~----~~~s~~eLa~~lgi----s~stvs~~L~~L~~~GlV~~~ 71 (108)
T 2kko_A 26 RRLQILDLLAQ----GERAVEAIATATGM----NLTTASANLQALKSGGLVEAR 71 (108)
T ss_dssp TTHHHHHHHTT----CCEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHc----CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 34556667765 48999999999999 999999999999999999976
No 314
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*
Probab=95.52 E-value=0.028 Score=50.00 Aligned_cols=123 Identities=11% Similarity=0.032 Sum_probs=77.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeechhHhhhCCCC-----------------------------CCe----
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYP-YIKGINFDLPHVIEHVPPH-----------------------------PCM---- 235 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~-----------------------------~gv---- 235 (333)
+...||++|||-=..+..+. +| +++++-+|.|.+++..++. .++
T Consensus 102 g~~QvV~LGaGlDTra~Rl~--~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~ 179 (310)
T 2uyo_A 102 GIRQFVILASGLDSRAYRLD--WPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA 179 (310)
T ss_dssp TCCEEEEETCTTCCHHHHSC--CCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred CCCeEEEeCCCCCchhhhcc--CCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCC
Confidence 45789999999888766654 34 4788889999887754321 000
Q ss_pred -------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhC-------CCCCc-C
Q 035738 236 -------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQS-------PGGKE-R 300 (333)
Q Consensus 236 -------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~-------~~g~~-r 300 (333)
.+||+++++++.++|+.+.+.+.||+.++ +|.+.++.. ...........-.+-... ..... +
T Consensus 180 Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~-~d~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 256 (310)
T 2uyo_A 180 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIA-VETSPLHGD--EWREQMQLRFRRVSDALGFEQAVDVQELIYHD 256 (310)
T ss_dssp CEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEE-EECCCTTCS--HHHHHHHHHHHHHHC-----------CCTTCC
T ss_pred CEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEE-EEecCCCCc--chhHHHHHHHHHHHHHcCCcCCCCccccccCC
Confidence 78899999999999999999998887754 455544321 000000000000000000 01112 2
Q ss_pred C-HHHHHHHHHhCCCCee
Q 035738 301 T-RHEFMTLATGAGFSGI 317 (333)
Q Consensus 301 t-~~e~~~ll~~aGf~~~ 317 (333)
+ .++..++|.+.||+.+
T Consensus 257 ~~~~~~~~~f~~~G~~~~ 274 (310)
T 2uyo_A 257 ENRAVVADWLNRHGWRAT 274 (310)
T ss_dssp TTCCCHHHHHTTTTEEEE
T ss_pred CChHHHHHHHHHCcCccc
Confidence 5 7899999999999887
No 315
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=95.52 E-value=0.0062 Score=52.68 Aligned_cols=59 Identities=17% Similarity=0.165 Sum_probs=48.5
Q ss_pred hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccccccc
Q 035738 35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYY 105 (333)
Q Consensus 35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l 105 (333)
+.|++.|...+ ++.|+.|||+++|+ +..-+.|+|+.|...|++.++ ++.|++++..-.+
T Consensus 17 l~iL~~l~~~~--~~~~~~eia~~~gl----~~stv~r~l~~L~~~G~v~~~------~~~Y~Lg~~~~~l 75 (257)
T 2g7u_A 17 FAVLLAFDAQR--PNPTLAELATEAGL----SRPAVRRILLTLQKLGYVAGS------GGRWSLTPRVLSI 75 (257)
T ss_dssp HHHHHTCSSSC--SSCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE------TTEEEECGGGHHH
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC------CCEEEEcHHHHHH
Confidence 45677776532 48999999999999 999999999999999999986 5789998765433
No 316
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=95.38 E-value=0.021 Score=44.49 Aligned_cols=78 Identities=15% Similarity=0.130 Sum_probs=46.4
Q ss_pred CCCCeEEEEcCCcc-HHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---C------CeEEEccCC-hhHHHHHHHHHHHh
Q 035738 189 DNIKQLVDVGGGIG-VTLQAITTKYPYIKGINFDL-PHVIEHVPPH---P------CMWILHDWN-DEHCLKLLKNCYKS 256 (333)
Q Consensus 189 ~~~~~vlDVGgG~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~------gv~vLh~~~-~~~~~~lL~~~~~~ 256 (333)
....+|||||||+| ..+..|++. .+..+++.|+ |..++..+.. | +..+.+.+. +.+...-+-++++.
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~~v~dDiF~P~~~~Y~~~DLIYsirPP~El~~~i~~lA~~ 112 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGGIVRDDITSPRMEIYRGAALIYSIRPPAEIHSSLMRVADA 112 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTTEECCCSSSCCHHHHTTEEEEEEESCCTTTHHHHHHHHHH
T ss_pred CCCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccceEEccCCCCcccccCCcCEEEEcCCCHHHHHHHHHHHHH
Confidence 35679999999999 588877764 4577999998 7666633321 2 225554432 33333334444443
Q ss_pred CCCCcEEEEEeee
Q 035738 257 IPEDGKVIAVELM 269 (333)
Q Consensus 257 L~pgG~l~i~e~~ 269 (333)
. |.-++|.-..
T Consensus 113 v--~adliI~pL~ 123 (153)
T 2k4m_A 113 V--GARLIIKPLT 123 (153)
T ss_dssp H--TCEEEEECBT
T ss_pred c--CCCEEEEcCC
Confidence 3 4555555443
No 317
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=95.34 E-value=0.018 Score=45.84 Aligned_cols=46 Identities=22% Similarity=0.270 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccc
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNS 100 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~ 100 (333)
++.|+++||+.+++ ++..++++|..|...|+|.... | .++.|.++.
T Consensus 43 ~~~s~~eIA~~~~i----~~~~l~kil~~L~~aGlv~s~r--G-~~GGy~Lar 88 (159)
T 3lwf_A 43 GPISLRSIAQDKNL----SEHYLEQLIGPLRNAGIVKSIR--G-AHGGYVLNG 88 (159)
T ss_dssp CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC--S-TTCEEEECS
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCeEEEec--C-CCCceEecC
Confidence 58999999999999 9999999999999999999762 2 246677653
No 318
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=95.33 E-value=0.011 Score=41.29 Aligned_cols=50 Identities=20% Similarity=0.285 Sum_probs=41.6
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHh-----CCCCCCCcccHHHHHHHHhcccceeeec
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQL-----TTKNKDAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~-----g~~~~~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
-+..|++.|.+.+ +++.|++||++.+ ++ +..-+.|.|+.|...|+|.+..
T Consensus 18 ~r~~IL~~l~~~~-~~~~s~~el~~~l~~~~~~i----s~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 18 PRLKILEVLQEPD-NHHVSAEDLYKRLIDMGEEI----GLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHHHHTSGG-GSSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHhCC-CCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCeEEEe
Confidence 4456888887531 0389999999999 88 8999999999999999999873
No 319
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=95.30 E-value=0.011 Score=45.89 Aligned_cols=50 Identities=22% Similarity=0.172 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccccc
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYV 106 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~ 106 (333)
++.|..+||+.+|+ ++..+.+.++.|...|+|.+. ....|.+|+.+..+.
T Consensus 21 ~~~~~~ela~~l~v----s~~tvs~~l~~Le~~Glv~r~-----~~~~~~LT~~g~~~~ 70 (142)
T 1on2_A 21 GYARVSDIAEALAV----HPSSVTKMVQKLDKDEYLIYE-----KYRGLVLTSKGKKIG 70 (142)
T ss_dssp SSCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE-----TTTEEEECHHHHHHH
T ss_pred CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe-----eCceEEEchhHHHHH
Confidence 48999999999999 999999999999999999986 246788888775443
No 320
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=95.26 E-value=0.0083 Score=52.00 Aligned_cols=57 Identities=18% Similarity=0.255 Sum_probs=46.0
Q ss_pred hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccc
Q 035738 35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVS 102 (333)
Q Consensus 35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~ 102 (333)
+.|++.|...+ ++.|+.|||+++|+ +..-+.|+|+.|...|++.+++ .+.|++++..
T Consensus 26 l~iL~~l~~~~--~~~~~~eia~~~gl----~kstv~r~l~tL~~~G~v~~~~-----~~~Y~lg~~~ 82 (260)
T 2o0y_A 26 IDLLELFDAAH--PTRSLKELVEGTKL----PKTTVVRLVATMCARSVLTSRA-----DGSYSLGPEM 82 (260)
T ss_dssp HHHHTTCBTTB--SSBCHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEECT-----TSCEEECHHH
T ss_pred HHHHHHHhhCC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEECC-----CCeEEecHHH
Confidence 44667776422 48999999999999 9999999999999999999872 2389887654
No 321
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=95.26 E-value=0.0067 Score=52.76 Aligned_cols=57 Identities=18% Similarity=0.194 Sum_probs=47.4
Q ss_pred hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccccc
Q 035738 35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSK 103 (333)
Q Consensus 35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~ 103 (333)
+.|++.|...+ ++.|+.|||+++|+ +..-+.|+|+.|...|++.++ ++.|++++..-
T Consensus 24 l~iL~~l~~~~--~~~~~~eia~~~gl----~~stv~r~l~tL~~~G~v~~~------~~~Y~Lg~~~~ 80 (265)
T 2ia2_A 24 LAVIRCFDHRN--QRRTLSDVARATDL----TRATARRFLLTLVELGYVATD------GSAFWLTPRVL 80 (265)
T ss_dssp HHHHHTCCSSC--SSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEES------SSEEEECGGGG
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEec------CCEEEEcHHHH
Confidence 45677776432 48999999999999 999999999999999999985 57899886543
No 322
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=95.24 E-value=0.0076 Score=44.95 Aligned_cols=60 Identities=17% Similarity=0.204 Sum_probs=46.2
Q ss_pred ChhhHhhhcCCCCCCC--HHHHHHHh-CCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccccc
Q 035738 36 GIFEIIDKAGPGAKLS--ASDIAAQL-TTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYV 106 (333)
Q Consensus 36 glfd~L~~~~~~g~~t--~~ela~~~-g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~ 106 (333)
.|+..|.. |+.+ ..||++.+ |+ .+..+.+.|+.|...|+|++... ....|++|+.+..+.
T Consensus 31 ~IL~~L~~----g~~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~~---r~~~y~LT~~G~~l~ 93 (111)
T 3df8_A 31 LIISVLGN----GSTRQNFNDIRSSIPGI----SSTILSRRIKDLIDSGLVERRSG---QITTYALTEKGMNVR 93 (111)
T ss_dssp HHHHHHTS----SSSCBCHHHHHHTSTTC----CHHHHHHHHHHHHHTTSEEEEES---SSEEEEECHHHHHHH
T ss_pred HHHHHHhc----CCCCCCHHHHHHHccCC----CHHHHHHHHHHHHHCCCEEEeec---CcEEEEECccHHHHH
Confidence 34445554 4777 99999999 99 99999999999999999998631 145677777775444
No 323
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=95.23 E-value=0.068 Score=48.42 Aligned_cols=36 Identities=17% Similarity=0.053 Sum_probs=30.7
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechhH
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDLPHV 225 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~~~~ 225 (333)
+..+.++||+||++|.++..++++ +.+++++|...+
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l 244 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPM 244 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhc
Confidence 457899999999999999999987 478999997433
No 324
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=95.22 E-value=0.013 Score=44.56 Aligned_cols=47 Identities=17% Similarity=0.329 Sum_probs=41.8
Q ss_pred HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
-.++.|+..|.+ ++.++.+||+.+|+ .+..+.+.|+.|...|++...
T Consensus 46 ~~rl~IL~~L~~----~~~s~~ela~~lgi----s~stvs~~L~~Le~~Glv~~~ 92 (122)
T 1r1t_A 46 PNRLRLLSLLAR----SELCVGDLAQAIGV----SESAVSHQLRSLRNLRLVSYR 92 (122)
T ss_dssp HHHHHHHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 356678888876 48999999999999 999999999999999999976
No 325
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=95.21 E-value=0.022 Score=44.54 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccc
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNS 100 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~ 100 (333)
++.|.++||+.+++ ++..++++|..|...|+|.... | .++.|.+..
T Consensus 27 ~~~s~~~IA~~~~i----~~~~l~kil~~L~~aGlv~s~r--G-~~GGy~Lar 72 (143)
T 3t8r_A 27 GCISLKSIAEENNL----SDLYLEQLVGPLRNAGLIRSVR--G-AKGGYQLRV 72 (143)
T ss_dssp CCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECS--S-SSSEEEESS
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCEEEecC--C-CCCCeeecC
Confidence 48999999999999 9999999999999999998652 2 246677654
No 326
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=95.20 E-value=0.02 Score=52.27 Aligned_cols=40 Identities=10% Similarity=0.125 Sum_probs=33.9
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC
Q 035738 191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH 232 (333)
Q Consensus 191 ~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~ 232 (333)
..+|||+|||+|.++..+++.. .+++++|+ +.+++.|+++
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n 254 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYN 254 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHH
T ss_pred CCEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHH
Confidence 4689999999999999888754 47999999 8898888754
No 327
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=95.20 E-value=0.0089 Score=47.28 Aligned_cols=67 Identities=13% Similarity=0.216 Sum_probs=53.4
Q ss_pred HHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccc
Q 035738 26 PMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVS 102 (333)
Q Consensus 26 ~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~ 102 (333)
..+|.--.++.|+..|.+ ++.|+.|||+.+|+ .+..+.+.|+.|...|+|.... .| ....|++|+..
T Consensus 52 l~aL~~p~R~~IL~~L~~----~~~t~~eLa~~lgl----s~stvs~hL~~L~~aGlV~~~~-~G-r~~~y~lt~~~ 118 (151)
T 3f6v_A 52 LEVAAEPTRRRLVQLLTS----GEQTVNNLAAHFPA----SRSAISQHLRVLTEAGLVTPRK-DG-RFRYYRLDPQG 118 (151)
T ss_dssp HHHHTSHHHHHHHHHGGG----CCEEHHHHHTTSSS----CHHHHHHHHHHHHHTTSEEEEE-ET-TEEEEEECHHH
T ss_pred HHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEe-cC-CEEEEEEChHH
Confidence 456666778899999985 59999999999999 9999999999999999999762 11 12346666543
No 328
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=95.14 E-value=0.017 Score=49.89 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=30.2
Q ss_pred CCCC--CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhH
Q 035738 188 FDNI--KQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHV 225 (333)
Q Consensus 188 ~~~~--~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~ 225 (333)
..+. .+|||++||+|..+..++.+ ..+++++|. |.+
T Consensus 84 l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~ 122 (258)
T 2oyr_A 84 IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVV 122 (258)
T ss_dssp CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHH
T ss_pred ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHH
Confidence 4445 79999999999999999998 457999999 654
No 329
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=95.07 E-value=0.082 Score=41.13 Aligned_cols=44 Identities=11% Similarity=0.229 Sum_probs=39.1
Q ss_pred HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceee
Q 035738 34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVEC 85 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~ 85 (333)
+..++..| .. ++.|..+||+.+++ ++..+.+.++.|...|++.+
T Consensus 40 q~~iL~~l-~~---~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r 83 (151)
T 3kp7_A 40 QSHVLNML-SI---EALTVGQITEKQGV----NKAAVSRRVKKLLNAELVKL 83 (151)
T ss_dssp HHHHHHHH-HH---SCBCHHHHHHHHCS----CSSHHHHHHHHHHHTTSEEC
T ss_pred HHHHHHHH-Hc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEe
Confidence 34477888 54 59999999999999 99999999999999999997
No 330
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=95.01 E-value=0.013 Score=43.75 Aligned_cols=80 Identities=14% Similarity=0.049 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHh-CCCCCCCcccHHHHHHHHhcccceeeecc
Q 035738 10 DQSFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQL-TTKNKDAPMMLDRILRLLASYSVVECSLD 88 (333)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~-g~~~~~~~~~l~~lL~~L~~~g~l~~~~~ 88 (333)
.-+...+.++..+.|...+ +..|.+ |+.+..|||+.+ |+ ++..+.+.|+.|...|+|.+...
T Consensus 9 ~c~~~~~l~~l~~~~~~~I---------L~~L~~----~~~~~~eLa~~l~~i----s~~tvs~~L~~Le~~GlI~r~~~ 71 (112)
T 1z7u_A 9 QTSINLALSTINGKWKLSL---------MDELFQ----GTKRNGELMRALDGI----TQRVLTDRLREMEKDGLVHRESF 71 (112)
T ss_dssp HHHHHHHHHTTCSTTHHHH---------HHHHHH----SCBCHHHHHHHSTTC----CHHHHHHHHHHHHHHTSEEEEEE
T ss_pred CCCHHHHHHHHcCccHHHH---------HHHHHh----CCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCCEEEeec
Confidence 3445555555555555443 344554 389999999999 99 99999999999999999998742
Q ss_pred C-CCccccccccccccccc
Q 035738 89 A-SGARRLYSLNSVSKYYV 106 (333)
Q Consensus 89 ~-~~~~~~y~~t~~~~~l~ 106 (333)
. ++..-.|.+|+.+..+.
T Consensus 72 ~~d~r~~~~~LT~~G~~~~ 90 (112)
T 1z7u_A 72 NELPPRVEYTLTPEGYALY 90 (112)
T ss_dssp CCSSCEEEEEECHHHHHHH
T ss_pred CCCCCeEEEEECHhHHHHH
Confidence 1 11123477777765443
No 331
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=94.96 E-value=0.038 Score=44.12 Aligned_cols=47 Identities=21% Similarity=0.388 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccc
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSV 101 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~ 101 (333)
++.|.++||+.+++ ++..++++|..|...|++.... | .++.|.+...
T Consensus 27 ~~~s~~~IA~~~~i----s~~~l~kil~~L~~aGlv~s~r--G-~~GGy~Lar~ 73 (162)
T 3k69_A 27 SKVASRELAQSLHL----NPVMIRNILSVLHKHGYLTGTV--G-KNGGYQLDLA 73 (162)
T ss_dssp SCBCHHHHHHHHTS----CGGGTHHHHHHHHHTTSSEEEC--S-TTCEEECCSC
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeec--C-CCCCeEecCC
Confidence 48999999999999 9999999999999999998652 2 2567887643
No 332
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=94.92 E-value=0.019 Score=44.98 Aligned_cols=54 Identities=17% Similarity=0.150 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeecc-CCCccccccccccccccc
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLD-ASGARRLYSLNSVSKYYV 106 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~-~~~~~~~y~~t~~~~~l~ 106 (333)
|+.+..||++.+|+ ++..+.+.|+.|...|++++... ..+ ...|.+|+.+..+.
T Consensus 36 g~~~~~eLa~~lgi----s~~tls~~L~~Le~~GlI~r~~~~~d~-~~~y~LT~~G~~l~ 90 (146)
T 2f2e_A 36 GLTRFGEFQKSLGL----AKNILAARLRNLVEHGVMVAVPAESGS-HQEYRLTDKGRALF 90 (146)
T ss_dssp TCCSHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEECSSSS-CEEEEECHHHHTTH
T ss_pred CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEEecCCCC-eEEEEECchHHHHH
Confidence 48999999999999 99999999999999999998742 112 34678887765443
No 333
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=94.87 E-value=0.041 Score=42.56 Aligned_cols=67 Identities=15% Similarity=0.234 Sum_probs=49.7
Q ss_pred HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccC-CCcccccccccccccc
Q 035738 32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDA-SGARRLYSLNSVSKYY 105 (333)
Q Consensus 32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~-~~~~~~y~~t~~~~~l 105 (333)
..+..++..|... ++.|..+||+.+++ ++..+.++++.|...|+|.+.... +.....+.+|+.+..+
T Consensus 31 ~~q~~iL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~ 98 (145)
T 3g3z_A 31 YNLFAVLYTLATE---GSRTQKHIGEKWSL----PKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAY 98 (145)
T ss_dssp HHHHHHHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHH
T ss_pred HHHHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHH
Confidence 3456678888776 48999999999999 999999999999999999986311 1011235566666544
No 334
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=94.83 E-value=0.03 Score=43.02 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=51.2
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccC-CCccccccccccccccc
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDA-SGARRLYSLNSVSKYYV 106 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~-~~~~~~y~~t~~~~~l~ 106 (333)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|...|++.+.... +.....|.+|+.+..+.
T Consensus 32 ~~~~iL~~l~~~---~~~~~~ela~~l~i----s~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 32 TRYSILQTLLKD---APLHQLALQERLQI----DRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 455578888776 48999999999999 999999999999999999987321 11123467777776555
No 335
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=94.77 E-value=0.016 Score=49.59 Aligned_cols=63 Identities=13% Similarity=0.190 Sum_probs=51.7
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccccc
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYV 106 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~ 106 (333)
.++.++..|.+. ++.|..|||+.+|+ ++..+.|.|+.|...|++.+.. ....|.+|+.+..+.
T Consensus 153 ~~~~IL~~L~~~---~~~s~~eLA~~lgl----sksTv~r~L~~Le~~GlV~r~~----r~~~~~LT~~G~~l~ 215 (244)
T 2wte_A 153 EEMKLLNVLYET---KGTGITELAKMLDK----SEKTLINKIAELKKFGILTQKG----KDRKVELNELGLNVI 215 (244)
T ss_dssp HHHHHHHHHHHH---TCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEET----TTTEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC----CccEEEECHHHHHHH
Confidence 355577777655 48999999999999 9999999999999999999862 356788888886554
No 336
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=94.72 E-value=0.02 Score=43.44 Aligned_cols=48 Identities=10% Similarity=0.212 Sum_probs=41.5
Q ss_pred HHhChhhHhhhcCCCCC-CCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 33 YELGIFEIIDKAGPGAK-LSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~-~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
.+..|+..|.+.+ +| +|+.|||+.+++ +..-+.|.|+.|...|++.+.
T Consensus 27 ~e~~il~~L~~~~--~~~~t~~eLa~~l~~----s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 27 ADLNVMKSFLNEP--DRWIDTDALSKSLKL----DVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHHHST--TCCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHCC--CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence 3556777887653 45 899999999999 999999999999999999985
No 337
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=94.70 E-value=0.015 Score=42.97 Aligned_cols=78 Identities=14% Similarity=0.158 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHh-CCCCCCCcccHHHHHHHHhcccceeeeccC-
Q 035738 12 SFAYANQLARGIVLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQL-TTKNKDAPMMLDRILRLLASYSVVECSLDA- 89 (333)
Q Consensus 12 ~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~-g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~- 89 (333)
+...+.+++.+.|...+|. .|.+ |+.+..||++.+ |+ ++..+.+.|+.|...|+|.+....
T Consensus 14 ~~~~~l~~l~~~~~~~IL~---------~L~~----~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~~~~ 76 (107)
T 2fsw_A 14 PVRKSMQIFAGKWTLLIIF---------QINR----RIIRYGELKRAIPGI----SEKMLIDELKFLCGKGLIKKKQYPE 76 (107)
T ss_dssp HHHHHHHHHTSSSHHHHHH---------HHTT----SCEEHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEECS
T ss_pred CHHHHHHHHcCccHHHHHH---------HHHh----CCcCHHHHHHHcccC----CHHHHHHHHHHHHHCCCEEEeecCC
Confidence 4555566666666554443 4443 489999999999 59 999999999999999999986421
Q ss_pred CCccccccccccccccc
Q 035738 90 SGARRLYSLNSVSKYYV 106 (333)
Q Consensus 90 ~~~~~~y~~t~~~~~l~ 106 (333)
++....|.+|+.+..+.
T Consensus 77 d~r~~~y~LT~~G~~l~ 93 (107)
T 2fsw_A 77 VPPRVEYSLTPLGEKVL 93 (107)
T ss_dssp SSCEEEEEECHHHHTTH
T ss_pred CCCeeEEEECccHHHHH
Confidence 11123588888775443
No 338
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=94.54 E-value=0.14 Score=45.15 Aligned_cols=22 Identities=14% Similarity=-0.097 Sum_probs=17.2
Q ss_pred HHHHHHHHHhCCCCeeEEeecC
Q 035738 302 RHEFMTLATGAGFSGISCERAI 323 (333)
Q Consensus 302 ~~e~~~ll~~aGf~~~~~~~~~ 323 (333)
....++-|.+|||++.++-..+
T Consensus 228 ag~VRR~L~~aGF~V~k~~G~g 249 (308)
T 3vyw_A 228 SLSVRKSLLTLGFKVGSSREIG 249 (308)
T ss_dssp CHHHHHHHHHTTCEEEEEECC-
T ss_pred cHHHHHHHHHCCCEEEecCCCC
Confidence 5678899999999987776554
No 339
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=94.53 E-value=0.0095 Score=67.15 Aligned_cols=122 Identities=16% Similarity=0.161 Sum_probs=53.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCC-----CeEEEeec-hhHhhhCCCC---------------C--------Ce----E
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPY-----IKGINFDL-PHVIEHVPPH---------------P--------CM----W 236 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~~---------------~--------gv----~ 236 (333)
...+||+||+|+|..+..+++...+ .+++..|+ +...+.+++. + ++ +
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~ 1319 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNC 1319 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEEC
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEcc
Confidence 4579999999999887776665432 24677777 4444333321 1 22 6
Q ss_pred EEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCccccccccchhhHHHhhCCCCCcCCHHHHHHHHHhCCCCe
Q 035738 237 ILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTSIESKSNSDSDVLMMIQSPGGKERTRHEFMTLATGAGFSG 316 (333)
Q Consensus 237 vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~aGf~~ 316 (333)
+||.-++.. ..|+++++.|+|||++++.|...... ......+++..- -......+.++|.++|+++||..
T Consensus 1320 vl~~t~~~~--~~l~~~~~lL~p~G~l~~~e~~~~~~-----~g~~~~~~~~~~---r~~~~~~~~~~w~~~l~~~gf~~ 1389 (2512)
T 2vz8_A 1320 ALATLGDPA--VAVGNMAATLKEGGFLLLHTLLAGHP-----LGEMVGFLTSPE---QGGRHLLSQDQWESLFAGASLHL 1389 (2512)
T ss_dssp C----------------------CCEEEEEEC----------------------------------CTTTTSSTTTTEEE
T ss_pred cccccccHH--HHHHHHHHhcCCCcEEEEEecccccc-----cccccccccccc---ccCCcccCHHHHHHHHHhCCCce
Confidence 677554443 78999999999999999988643110 000000110000 01123346778999999999988
Q ss_pred eEEee
Q 035738 317 ISCER 321 (333)
Q Consensus 317 ~~~~~ 321 (333)
+.+..
T Consensus 1390 ~~~~~ 1394 (2512)
T 2vz8_A 1390 VALKR 1394 (2512)
T ss_dssp EEEEE
T ss_pred eeecc
Confidence 76643
No 340
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=94.52 E-value=0.048 Score=41.65 Aligned_cols=48 Identities=21% Similarity=0.155 Sum_probs=41.2
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|...|++.+..
T Consensus 35 ~~~~iL~~l~~~---~~~~~~~la~~l~~----~~~tvs~~l~~L~~~gli~r~~ 82 (138)
T 1jgs_A 35 AQFKVLCSIRCA---ACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLP 82 (138)
T ss_dssp HHHHHHHHHHHH---SSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHhc---CCCCHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEecC
Confidence 345567777765 48999999999999 9999999999999999999863
No 341
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=94.48 E-value=0.037 Score=43.86 Aligned_cols=67 Identities=18% Similarity=0.246 Sum_probs=48.9
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCC-Cccccccccccccccc
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDAS-GARRLYSLNSVSKYYV 106 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~-~~~~~y~~t~~~~~l~ 106 (333)
.+..++..|... ++.|..+||+.+++ ++..+.++++.|...|+|.+..... ...-.+.+|+.+..+.
T Consensus 47 ~q~~iL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 114 (162)
T 3k0l_A 47 PQFTALSVLAAK---PNLSNAKLAERSFI----KPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKL 114 (162)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTS----CGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHH
Confidence 345577788776 48999999999999 9999999999999999999874111 0111255565554433
No 342
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=94.47 E-value=0.028 Score=43.05 Aligned_cols=48 Identities=15% Similarity=0.338 Sum_probs=41.8
Q ss_pred HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
..++.++..|... ++.|..+||+.+++ ++..+.+.++.|...|++.+.
T Consensus 33 ~~~~~iL~~l~~~---~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~ 80 (139)
T 3bja_A 33 YVQFGVIQVLAKS---GKVSMSKLIENMGC----VPSNMTTMIQRMKRDGYVMTE 80 (139)
T ss_dssp HHHHHHHHHHHHS---CSEEHHHHHHHCSS----CCTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHc---CCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCeeec
Confidence 3455677778775 48999999999999 999999999999999999986
No 343
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=94.44 E-value=0.014 Score=42.30 Aligned_cols=64 Identities=11% Similarity=0.168 Sum_probs=47.1
Q ss_pred HhChhhHhhhcCCCCCCCHHHH----HHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccccc
Q 035738 34 ELGIFEIIDKAGPGAKLSASDI----AAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYV 106 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~el----a~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~ 106 (333)
++.++..|... ++.|..+| |+.+++ ++..+.+.++.|...|++.+.... ....|.+|+.+..+.
T Consensus 10 q~~iL~~l~~~---~~~~~~el~~~la~~l~i----s~~tvs~~l~~Le~~gli~r~~~~--r~~~~~LT~~G~~~~ 77 (99)
T 1tbx_A 10 EAIVLAYLYDN---EGIATYDLYKKVNAEFPM----STATFYDAKKFLIQEGFVKERQER--GEKRLYLTEKGKLFA 77 (99)
T ss_dssp HHHHHHHHTTC---TTCBHHHHHHHHHTTSCC----CHHHHHHHHHHHHHTTSEEEEEET--TEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc---CCcCHHHHHHHHHHHcCC----CHHHHHHHHHHHHHCCCEEEEecC--CceEEEECHHHHHHH
Confidence 34566666664 48999999 999999 999999999999999999986311 133455666555443
No 344
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=94.37 E-value=0.047 Score=48.74 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=46.0
Q ss_pred hHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCCC
Q 035738 177 VMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVPP 231 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~ 231 (333)
...++++.+. ..++..+||..+|.|..+..++++. |+.+++++|. |.+++.+++
T Consensus 45 Ll~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~r 100 (347)
T 3tka_A 45 LLDEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKT 100 (347)
T ss_dssp TTHHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTT
T ss_pred cHHHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHh
Confidence 4567777776 7778899999999999999999985 7899999999 888888754
No 345
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=94.36 E-value=0.031 Score=42.88 Aligned_cols=49 Identities=6% Similarity=0.201 Sum_probs=40.9
Q ss_pred HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738 34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
+..++..|...+ +++.|..+||+.+++ ++..+.+.++.|...|++.+..
T Consensus 36 ~~~iL~~l~~~~-~~~~~~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~ 84 (141)
T 3bro_A 36 QMTIIDYLSRNK-NKEVLQRDLESEFSI----KSSTATVLLQRMEIKKLLYRKV 84 (141)
T ss_dssp HHHHHHHHHHTT-TSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCC-CCCcCHHHHHHHHCC----CcchHHHHHHHHHHCCCEEeeC
Confidence 445677777652 127999999999999 9999999999999999999863
No 346
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=94.28 E-value=0.024 Score=44.07 Aligned_cols=48 Identities=19% Similarity=0.269 Sum_probs=41.6
Q ss_pred HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
..++.++..|... ++.|..+||+.+++ ++..+.+.++.|...|+|.+.
T Consensus 40 ~~~~~iL~~l~~~---~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~ 87 (148)
T 3nrv_A 40 MTEWRIISVLSSA---SDCSVQKISDILGL----DKAAVSRTVKKLEEKKYIEVN 87 (148)
T ss_dssp HHHHHHHHHHHHS---SSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC-
T ss_pred HHHHHHHHHHHcC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEee
Confidence 3456677788776 48999999999999 999999999999999999986
No 347
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=94.18 E-value=0.028 Score=43.31 Aligned_cols=48 Identities=15% Similarity=0.045 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccccccc
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYY 105 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l 105 (333)
++.|..+||+.+|+ ++..+.+.++.|...|++.+. ...|.+|+.+..+
T Consensus 30 ~~~s~~ela~~l~i----s~~tv~~~l~~Le~~Gli~r~------~~~~~Lt~~g~~~ 77 (139)
T 2x4h_A 30 EGAKINRIAKDLKI----APSSVFEEVSHLEEKGLVKKK------EDGVWITNNGTRS 77 (139)
T ss_dssp SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE------TTEEEECHHHHHH
T ss_pred CCcCHHHHHHHhCC----ChHHHHHHHHHHHHCCCEEec------CCeEEEChhHHHH
Confidence 58999999999999 999999999999999999986 3567777766543
No 348
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=94.17 E-value=0.024 Score=43.58 Aligned_cols=62 Identities=16% Similarity=0.151 Sum_probs=46.5
Q ss_pred hhhHhhhcCCCCCCCHHHHHHHh-CCCCCCCcccHHHHHHHHhcccceeeeccC-CCccccccccccccccc
Q 035738 37 IFEIIDKAGPGAKLSASDIAAQL-TTKNKDAPMMLDRILRLLASYSVVECSLDA-SGARRLYSLNSVSKYYV 106 (333)
Q Consensus 37 lfd~L~~~~~~g~~t~~ela~~~-g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~-~~~~~~y~~t~~~~~l~ 106 (333)
|+..|.. |+.+..||++.+ |+ ++..+.+.|+.|...|+|.+.... +...-.|.+|+.+..+.
T Consensus 40 IL~~L~~----g~~~~~eLa~~l~gi----s~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~ 103 (131)
T 1yyv_A 40 ILVALRD----GTHRFSDLRRXMGGV----SEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVS 103 (131)
T ss_dssp HHHHGGG----CCEEHHHHHHHSTTC----CHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHH
T ss_pred HHHHHHc----CCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHHHH
Confidence 4444554 489999999999 79 999999999999999999986421 11123588887775544
No 349
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=94.12 E-value=0.035 Score=43.01 Aligned_cols=49 Identities=20% Similarity=0.260 Sum_probs=43.0
Q ss_pred HHHHhChhhHhhh-cCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 31 AVYELGIFEIIDK-AGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 31 ~a~~lglfd~L~~-~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
...++.++..|.. . ++.|..+||+.+|+ ++..+.+.++.|...|+|.+.
T Consensus 34 ~~~~~~iL~~l~~~~---~~~~~~~la~~l~i----~~~~vs~~l~~Le~~glv~r~ 83 (147)
T 2hr3_A 34 QFSQLVVLGAIDRLG---GDVTPSELAAAERM----RSSNLAALLRELERGGLIVRH 83 (147)
T ss_dssp HHHHHHHHHHHHHTT---SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHHcC---CCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeC
Confidence 3455677888876 5 58999999999999 999999999999999999986
No 350
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=94.11 E-value=0.022 Score=44.04 Aligned_cols=48 Identities=17% Similarity=0.210 Sum_probs=42.0
Q ss_pred HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
..+..++..|... ++.|..+||+.+++ ++..+.++++.|...|+|++.
T Consensus 37 ~~~~~iL~~l~~~---~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~ 84 (143)
T 3oop_A 37 PEQWSVLEGIEAN---EPISQKEIALWTKK----DTPTVNRIVDVLLRKELIVRE 84 (143)
T ss_dssp HHHHHHHHHHHHH---SSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHc---CCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCeecc
Confidence 4455677777765 48999999999999 999999999999999999986
No 351
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=94.08 E-value=0.041 Score=40.02 Aligned_cols=47 Identities=17% Similarity=0.302 Sum_probs=41.0
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
.+..|+..|... ++.|..+||+.+|+ ++..+.+.|+.|...|++.+.
T Consensus 21 ~~~~il~~l~~~---~~~s~~ela~~l~i----s~~tv~~~l~~L~~~glv~~~ 67 (109)
T 1sfx_A 21 SDVRIYSLLLER---GGMRVSEIARELDL----SARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp HHHHHHHHHHHH---CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEE
Confidence 455567777665 48999999999999 999999999999999999986
No 352
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=94.07 E-value=0.05 Score=48.32 Aligned_cols=43 Identities=14% Similarity=0.106 Sum_probs=35.8
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hhHhhhCC
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKY-PYIKGINFDL-PHVIEHVP 230 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~ 230 (333)
..+..+|||+|||+|..+..+++.. +..+++++|+ +..++.++
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~ 144 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMA 144 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Confidence 5567899999999999999999874 5689999999 77766544
No 353
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=94.04 E-value=0.047 Score=48.14 Aligned_cols=49 Identities=16% Similarity=0.181 Sum_probs=37.4
Q ss_pred HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCC
Q 035738 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVP 230 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~ 230 (333)
...++..+. .....|||++||+|.++..+++.. .+++++|+ +.+++.++
T Consensus 225 ~~~~i~~~~--~~~~~vlD~f~GsGt~~~~a~~~g--~~~~g~e~~~~~~~~a~ 274 (297)
T 2zig_A 225 AERLVRMFS--FVGDVVLDPFAGTGTTLIAAARWG--RRALGVELVPRYAQLAK 274 (297)
T ss_dssp HHHHHHHHC--CTTCEEEETTCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHH
T ss_pred HHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHcC--CeEEEEeCCHHHHHHHH
Confidence 444555442 356789999999999999988754 57999999 77777665
No 354
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=94.01 E-value=0.028 Score=40.78 Aligned_cols=50 Identities=18% Similarity=0.167 Sum_probs=40.4
Q ss_pred HHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 29 MQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 29 l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
+.--.++.|+..|... |+.++.|||+.+|+ ++..+.+.|+.|... ++...
T Consensus 24 L~~~~Rl~IL~~l~~~---~~~~~~ela~~l~i----s~stvs~hL~~L~~~-lv~~~ 73 (99)
T 2zkz_A 24 MAHPMRLKIVNELYKH---KALNVTQIIQILKL----PQSTVSQHLCKMRGK-VLKRN 73 (99)
T ss_dssp HCSHHHHHHHHHHHHH---SCEEHHHHHHHHTC----CHHHHHHHHHHHBTT-TBEEE
T ss_pred hCCHHHHHHHHHHHHC---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHH-hhhhe
Confidence 3344566777555443 48999999999999 999999999999999 99865
No 355
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=94.01 E-value=0.022 Score=43.66 Aligned_cols=47 Identities=4% Similarity=0.105 Sum_probs=42.0
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|...|++.+.
T Consensus 39 ~~~~iL~~l~~~---~~~t~~ela~~l~~----~~~tvs~~l~~L~~~glv~r~ 85 (140)
T 2nnn_A 39 TQWAALVRLGET---GPCPQNQLGRLTAM----DAATIKGVVERLDKRGLIQRS 85 (140)
T ss_dssp HHHHHHHHHHHH---SSBCHHHHHHHTTC----CHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEee
Confidence 456688888776 48999999999999 999999999999999999986
No 356
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=93.89 E-value=0.041 Score=43.21 Aligned_cols=61 Identities=15% Similarity=0.127 Sum_probs=44.8
Q ss_pred HHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccc
Q 035738 26 PMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSV 101 (333)
Q Consensus 26 ~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~ 101 (333)
..++++...+... .. ++.|+++||+.+++ ++..++++|..|...|+|.... | .+.|.++.-
T Consensus 14 ~yAl~~L~~La~~---~~----~~~~~~~iA~~~~i----~~~~l~kil~~L~~~Glv~s~r--G--~GGy~L~~~ 74 (149)
T 1ylf_A 14 SIAVHILSILKNN---PS----SLCTSDYMAESVNT----NPVVIRKIMSYLKQAGFVYVNR--G--PGGAGLLKD 74 (149)
T ss_dssp HHHHHHHHHHHHS---CG----GGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC-------CCEEESSC
T ss_pred HHHHHHHHHHHhC---CC----CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEcc--C--CCceEeCCC
Confidence 3456665555331 11 48999999999999 9999999999999999998752 2 466776643
No 357
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=93.78 E-value=0.056 Score=36.73 Aligned_cols=56 Identities=14% Similarity=0.267 Sum_probs=47.2
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccc
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLN 99 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t 99 (333)
.+-.|+++|.+.| .|+++.+||+.+|+ +..-+.+.|..|...|.+..+ ..-.|.++
T Consensus 20 ~eekVLe~LkeaG--~PlkageIae~~Gv----dKKeVdKaik~LKkEgkI~SP-----kRCyw~~~ 75 (80)
T 2lnb_A 20 LEQRILQVLTEAG--SPVKLAQLVKECQA----PKRELNQVLYRMKKELKVSLT-----SPATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHHT--SCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE-----ETTEEEES
T ss_pred HHHHHHHHHHHcC--CCCCHHHHHHHHCC----CHHHHHHHHHHHHHcCCccCC-----CCceeeCC
Confidence 4567889999876 79999999999999 999999999999999999876 24455554
No 358
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=93.76 E-value=0.034 Score=42.46 Aligned_cols=47 Identities=15% Similarity=0.216 Sum_probs=41.2
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|...|++.+.
T Consensus 30 ~~~~iL~~l~~~---~~~~~~ela~~l~~----s~~tvs~~l~~L~~~glv~~~ 76 (138)
T 3bpv_A 30 AQVACLLRIHRE---PGIKQDELATFFHV----DKGTIARTLRRLEESGFIERE 76 (138)
T ss_dssp HHHHHHHHHHHS---TTCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEee
Confidence 345567777775 48999999999999 999999999999999999986
No 359
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=93.73 E-value=0.042 Score=42.40 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=39.8
Q ss_pred HhChhhHh-hhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 34 ELGIFEII-DKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 34 ~lglfd~L-~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
+..++..| ... ++.|..+||+.+++ ++..+.+.++.|...|++.+.
T Consensus 39 ~~~iL~~l~~~~---~~~t~~~la~~l~~----s~~~vs~~l~~L~~~glv~r~ 85 (146)
T 2fbh_A 39 RWLVLLHLARHR---DSPTQRELAQSVGV----EGPTLARLLDGLESQGLVRRL 85 (146)
T ss_dssp HHHHHHHHHHCS---SCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcC---CCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCeeec
Confidence 44566777 443 58999999999999 999999999999999999986
No 360
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=93.72 E-value=0.04 Score=42.56 Aligned_cols=47 Identities=6% Similarity=0.046 Sum_probs=40.6
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
.++.++..|. . ++.|..+||+.+++ ++..+.+.++.|...|++.+..
T Consensus 38 ~~~~iL~~l~-~---~~~~~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~ 84 (146)
T 2gxg_A 38 LDFLVLRATS-D---GPKTMAYLANRYFV----TQSAITASVDKLEEMGLVVRVR 84 (146)
T ss_dssp HHHHHHHHHT-T---SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHh-c---CCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEeec
Confidence 4555667776 4 58999999999999 9999999999999999999863
No 361
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=93.72 E-value=0.032 Score=42.94 Aligned_cols=49 Identities=6% Similarity=0.162 Sum_probs=42.2
Q ss_pred HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738 32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
..++.++..|... ++.|..+||+.+++ ++..+.+.++.|...|++.+..
T Consensus 37 ~~~~~iL~~l~~~---~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~ 85 (142)
T 2bv6_A 37 YPQFLVLTILWDE---SPVNVKKVVTELAL----DTGTVSPLLKRMEQVDLIKRER 85 (142)
T ss_dssp HHHHHHHHHHHHS---SEEEHHHHHHHTTC----CTTTHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHc---CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeec
Confidence 3455677778765 48999999999999 9999999999999999999863
No 362
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=93.68 E-value=0.036 Score=43.77 Aligned_cols=47 Identities=15% Similarity=0.173 Sum_probs=40.6
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|...|+|.+.
T Consensus 50 ~~~~iL~~l~~~---~~~t~~ela~~l~i----s~~tvs~~l~~Le~~glv~r~ 96 (162)
T 2fa5_A 50 PEWRVITILALY---PGSSASEVSDRTAM----DKVAVSRAVARLLERGFIRRE 96 (162)
T ss_dssp HHHHHHHHHHHS---TTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC-
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeee
Confidence 345577778765 48999999999999 999999999999999999985
No 363
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=93.61 E-value=0.021 Score=44.05 Aligned_cols=67 Identities=15% Similarity=0.111 Sum_probs=46.7
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccC-CCccccccccccccccc
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDA-SGARRLYSLNSVSKYYV 106 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~-~~~~~~y~~t~~~~~l~ 106 (333)
.+..++..|... ++.|..+||+.+++ ++..+.++++.|...|+|++.+.. +...-.+.+|+.+..+.
T Consensus 37 ~q~~vL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 104 (140)
T 3hsr_A 37 TGYIVLMAIEND---EKLNIKKLGERVFL----DSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIK 104 (140)
T ss_dssp HHHHHHHHSCTT---CEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTH
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHH
Confidence 334456666654 59999999999999 999999999999999999987311 00112355566554433
No 364
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=93.60 E-value=0.045 Score=42.88 Aligned_cols=48 Identities=19% Similarity=0.138 Sum_probs=42.2
Q ss_pred HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
..++.++..|... ++.|..+||+.+++ ++..+.+.++.|...|++.+.
T Consensus 44 ~~~~~iL~~l~~~---~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~ 91 (154)
T 2eth_A 44 TTELYAFLYVALF---GPKKMKEIAEFLST----TKSNVTNVVDSLEKRGLVVRE 91 (154)
T ss_dssp HHHHHHHHHHHHH---CCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEee
Confidence 3466677888776 48999999999999 999999999999999999986
No 365
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=93.60 E-value=0.04 Score=42.84 Aligned_cols=46 Identities=7% Similarity=0.127 Sum_probs=40.8
Q ss_pred HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
++.++..|... ++.|..+||+.+++ ++..+.+.++.|...|++.+.
T Consensus 44 ~~~iL~~l~~~---~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~ 89 (150)
T 2rdp_A 44 QFVALQWLLEE---GDLTVGELSNKMYL----ACSTTTDLVDRMERNGLVARV 89 (150)
T ss_dssp HHHHHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeec
Confidence 45567778775 48999999999999 999999999999999999986
No 366
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=93.57 E-value=0.034 Score=43.60 Aligned_cols=66 Identities=14% Similarity=0.115 Sum_probs=47.0
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccC-CCcccccccccccccc
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDA-SGARRLYSLNSVSKYY 105 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~-~~~~~~y~~t~~~~~l 105 (333)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|...|++.+.... +.....+.+|+.+..+
T Consensus 44 ~~~~iL~~l~~~---~~~t~~ela~~l~i----~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~ 110 (155)
T 3cdh_A 44 PEWRVLACLVDN---DAMMITRLAKLSLM----EQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRAL 110 (155)
T ss_dssp HHHHHHHHHSSC---SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHH
T ss_pred HHHHHHHHHHHC---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHH
Confidence 345566777665 58999999999999 999999999999999999986210 0011235566555443
No 367
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=93.57 E-value=0.063 Score=42.19 Aligned_cols=54 Identities=20% Similarity=0.277 Sum_probs=43.5
Q ss_pred HhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccccccc
Q 035738 40 IIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYY 105 (333)
Q Consensus 40 ~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l 105 (333)
.|... ++.|..+||+.+|+ ++..+.+.++.|...|+|.+. .+..+.+|+.+..+
T Consensus 48 ~l~~~---~~~~~~~la~~l~v----s~~tvs~~l~~Le~~Glv~r~-----~~~~~~lT~~g~~~ 101 (155)
T 2h09_A 48 LIREV---GEARQVDMAARLGV----SQPTVAKMLKRLATMGLIEMI-----PWRGVFLTAEGEKL 101 (155)
T ss_dssp HHHHH---SCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTCEEEE-----TTTEEEECHHHHHH
T ss_pred HHHhC---CCcCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEe-----cCCceEEChhHHHH
Confidence 55554 47899999999999 999999999999999999986 24556677666443
No 368
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=93.53 E-value=0.04 Score=42.92 Aligned_cols=46 Identities=20% Similarity=0.269 Sum_probs=40.9
Q ss_pred HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
++.++..|... ++.|..+||+.+++ ++..+.+.++.|...|+|.+.
T Consensus 42 ~~~iL~~l~~~---~~~t~~ela~~l~~----~~~~vs~~l~~Le~~Glv~r~ 87 (152)
T 3bj6_A 42 QRAILEGLSLT---PGATAPQLGAALQM----KRQYISRILQEVQRAGLIERR 87 (152)
T ss_dssp HHHHHHHHHHS---TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeec
Confidence 45567777765 48999999999999 999999999999999999986
No 369
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=93.49 E-value=0.02 Score=41.09 Aligned_cols=62 Identities=13% Similarity=0.037 Sum_probs=43.9
Q ss_pred hhhHhhhcCCCCCCCHHHHHHHhCCCCCCCccc-HHHHHHHHhcccceeeeccCCCcccccccccccccc
Q 035738 37 IFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMM-LDRILRLLASYSVVECSLDASGARRLYSLNSVSKYY 105 (333)
Q Consensus 37 lfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~-l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l 105 (333)
++..|...| .+.|..|||+.+++ ++.. +.+.++.|...|++..++. +.....+.+|+.+..+
T Consensus 20 ~L~~l~~~~--~~~t~~eLa~~l~i----s~~t~vs~~l~~Le~~Glv~~~~~-drR~~~~~LT~~G~~~ 82 (95)
T 2pg4_A 20 TLLEFEKKG--YEPSLAEIVKASGV----SEKTFFMGLKDRLIRAGLVKEETL-SYRVKTLKLTEKGRRL 82 (95)
T ss_dssp HHHHHHHTT--CCCCHHHHHHHHCC----CHHHHHTTHHHHHHHTTSEEEEEE-ETTEEEEEECHHHHHH
T ss_pred HHHHHHhcC--CCCCHHHHHHHHCC----CchHHHHHHHHHHHHCCCeecCCC-CCCeEEEEECHhHHHH
Confidence 445555542 27999999999999 9999 9999999999999995421 1112235566655443
No 370
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=93.48 E-value=0.14 Score=40.63 Aligned_cols=67 Identities=15% Similarity=0.194 Sum_probs=49.0
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccC-CCccccccccccccccc
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDA-SGARRLYSLNSVSKYYV 106 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~-~~~~~~y~~t~~~~~l~ 106 (333)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|...|+|.+.... +...-.+.+|+.+..+.
T Consensus 46 ~~~~iL~~L~~~---~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~ 113 (168)
T 2nyx_A 46 PQFRTLVILSNH---GPINLATLATLLGV----QPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVV 113 (168)
T ss_dssp HHHHHHHHHHHH---CSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHH
Confidence 455677788775 48999999999999 999999999999999999986311 10112255666554433
No 371
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=93.46 E-value=0.032 Score=43.05 Aligned_cols=68 Identities=9% Similarity=0.102 Sum_probs=49.2
Q ss_pred HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccC-CCccccccccccccccc
Q 035738 32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDA-SGARRLYSLNSVSKYYV 106 (333)
Q Consensus 32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~-~~~~~~y~~t~~~~~l~ 106 (333)
..++.++..|... ++.|..+||+.+++ ++..+.+.++.|...|++.+.... +.....+.+|+.+..+.
T Consensus 33 ~~~~~iL~~l~~~---~~~~~~~la~~l~~----s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~ 101 (145)
T 2a61_A 33 PAQFDILQKIYFE---GPKRPGELSVLLGV----AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVI 101 (145)
T ss_dssp HHHHHHHHHHHHH---CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHH
Confidence 3456677778765 48999999999999 999999999999999999986310 00111355565554433
No 372
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=93.40 E-value=0.034 Score=43.34 Aligned_cols=49 Identities=12% Similarity=0.179 Sum_probs=40.6
Q ss_pred HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
..+..++..|...+ +++|..+||+.+++ ++..+.++++.|...|+|.+.
T Consensus 39 ~~q~~vL~~l~~~~--~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~r~ 87 (150)
T 3fm5_A 39 VRSYSVLVLACEQA--EGVNQRGVAATMGL----DPSQIVGLVDELEERGLVVRT 87 (150)
T ss_dssp HHHHHHHHHHHHST--TCCCSHHHHHHHTC----CHHHHHHHHHHHHTTTSEEC-
T ss_pred HHHHHHHHHHHhCC--CCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEee
Confidence 34555667776543 47899999999999 999999999999999999986
No 373
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=93.38 E-value=0.11 Score=40.50 Aligned_cols=44 Identities=23% Similarity=0.284 Sum_probs=37.4
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccc
Q 035738 49 KLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSV 101 (333)
Q Consensus 49 ~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~ 101 (333)
+ |+++||+.+++ ++..++++|..|...|+|.... | .+.|.+..-
T Consensus 24 ~-s~~~IA~~~~i----~~~~l~kIl~~L~~aGlv~s~r--G--~GGy~Lar~ 67 (145)
T 1xd7_A 24 T-SSEIIADSVNT----NPVVVRRMISLLKKADILTSRA--G--VPGASLKKD 67 (145)
T ss_dssp C-CHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECCS--S--SSSCEESSC
T ss_pred C-CHHHHHHHHCc----CHHHHHHHHHHHHHCCceEeec--C--CCCceecCC
Confidence 5 99999999999 9999999999999999998752 2 466776643
No 374
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=93.32 E-value=0.042 Score=42.33 Aligned_cols=47 Identities=9% Similarity=0.041 Sum_probs=40.8
Q ss_pred HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738 34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
+..++..|... ++.|..+||+.+++ ++..+.+.++.|...|++.+..
T Consensus 31 ~~~iL~~l~~~---~~~t~~~la~~l~~----s~~~vs~~l~~Le~~gli~r~~ 77 (144)
T 1lj9_A 31 QYLYLVRVCEN---PGIIQEKIAELIKV----DRTTAARAIKRLEEQGFIYRQE 77 (144)
T ss_dssp HHHHHHHHHHS---TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHC---cCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeec
Confidence 44567777765 48999999999999 9999999999999999999863
No 375
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=93.30 E-value=0.044 Score=42.79 Aligned_cols=68 Identities=15% Similarity=0.167 Sum_probs=49.8
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccC-CCcccccccccccccccc
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDA-SGARRLYSLNSVSKYYVP 107 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~-~~~~~~y~~t~~~~~l~~ 107 (333)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|...|+|.+.... +.....+.+|+.+..+..
T Consensus 48 ~~~~iL~~l~~~---~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 116 (153)
T 2pex_A 48 PQYLVMLVLWET---DERSVSEIGERLYL----DSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRS 116 (153)
T ss_dssp HHHHHHHHHHHS---CSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGG
T ss_pred HHHHHHHHHHhC---CCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHH
Confidence 455677778775 48999999999999 999999999999999999986310 001123666777665543
No 376
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=93.30 E-value=0.05 Score=42.04 Aligned_cols=47 Identities=17% Similarity=0.304 Sum_probs=40.2
Q ss_pred HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
..+..++..|... +.|..+||+.+|+ ++..+.+.++.|...|+|.+.
T Consensus 38 ~~~~~iL~~l~~~----~~t~~eLa~~l~~----s~~tvs~~l~~L~~~Glv~r~ 84 (146)
T 3tgn_A 38 NTQEHILMLLSEE----SLTNSELARRLNV----SQAAVTKAIKSLVKEGMLETS 84 (146)
T ss_dssp HHHHHHHHHHTTC----CCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC-
T ss_pred HHHHHHHHHHHhC----CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEec
Confidence 3456677777764 4999999999999 999999999999999999986
No 377
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=93.26 E-value=0.23 Score=38.57 Aligned_cols=67 Identities=13% Similarity=0.093 Sum_probs=48.0
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceee--ecc-CCCccccccccccccccc
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVEC--SLD-ASGARRLYSLNSVSKYYV 106 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~--~~~-~~~~~~~y~~t~~~~~l~ 106 (333)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|...|+|.+ ... .+...-.+.+|+.+..+.
T Consensus 42 ~~~~iL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~ 111 (154)
T 2qww_A 42 QQLAMINVIYST---PGISVADLTKRLII----TGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLS 111 (154)
T ss_dssp HHHHHHHHHHHS---TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHH
Confidence 345567777775 48999999999999 99999999999999999998 421 010112355666555443
No 378
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.26 E-value=0.16 Score=50.30 Aligned_cols=127 Identities=14% Similarity=0.111 Sum_probs=85.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCC--------CCeEEEeechhHhhhCC-------------------------------
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYP--------YIKGINFDLPHVIEHVP------------------------------- 230 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p--------~~~~~~~D~~~~~~~a~------------------------------- 230 (333)
+...||-+|||.=....++...+| +++++=+|.|++++.-+
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT 186 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence 468999999999999999988755 67777788888764211
Q ss_pred --CC------------------------CCe-------EEEccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCc
Q 035738 231 --PH------------------------PCM-------WILHDWNDEHCLKLLKNCYKSIPEDGKVIAVELMLPEVPNTS 277 (333)
Q Consensus 231 --~~------------------------~gv-------~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~e~~~~~~~~~~ 277 (333)
.+ ++. .+|.+++++.+.++|+.+.+ + |++.+++.|.+.+......
T Consensus 187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~~~~~~~~e~~~~~~~~d~ 264 (695)
T 2zwa_A 187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-ENSHFIILEQLIPKGPFEP 264 (695)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-SSEEEEEEEECCTTCTTSH
T ss_pred CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-CCceEEEEEeecCCCCCCh
Confidence 00 010 67788899999999999985 5 6889999998877533221
Q ss_pred cccccccchhhHHHhh---CC-CCCcCCHHHHHHHHHhCCCCeeEEeec
Q 035738 278 IESKSNSDSDVLMMIQ---SP-GGKERTRHEFMTLATGAGFSGISCERA 322 (333)
Q Consensus 278 ~~~~~~~~~d~~m~~~---~~-~g~~rt~~e~~~ll~~aGf~~~~~~~~ 322 (333)
+...+--.+... .. -....+.++..++|.+.||+.+.....
T Consensus 265 ----f~~~m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~ 309 (695)
T 2zwa_A 265 ----FSKQMLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDM 309 (695)
T ss_dssp ----HHHHHHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEH
T ss_pred ----HHHHHHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceeeH
Confidence 111110001000 00 013447999999999999988776644
No 379
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=93.26 E-value=0.04 Score=43.49 Aligned_cols=48 Identities=15% Similarity=0.151 Sum_probs=42.1
Q ss_pred HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
..++.++..|... ++.|..+||+.+++ ++..+.+.++.|...|++.+.
T Consensus 52 ~~~~~iL~~l~~~---~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~ 99 (162)
T 3cjn_A 52 TAKMRALAILSAK---DGLPIGTLGIFAVV----EQSTLSRALDGLQADGLVRRE 99 (162)
T ss_dssp HHHHHHHHHHHHS---CSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHC---CCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEec
Confidence 3456677888775 48999999999999 999999999999999999986
No 380
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=93.19 E-value=0.094 Score=44.25 Aligned_cols=91 Identities=13% Similarity=0.071 Sum_probs=59.3
Q ss_pred HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCC---CC--------CCe----------
Q 035738 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVP---PH--------PCM---------- 235 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~~--------~gv---------- 235 (333)
..++.+.+. +....+|||+||++|.++...+....-.+++++|+ +.-.+.-+ .+ .++
T Consensus 67 L~ei~ek~~-l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~~ 145 (267)
T 3p8z_A 67 LQWFVERNM-VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEKC 145 (267)
T ss_dssp HHHHHHTTS-SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCCC
T ss_pred HHHHHHhcC-CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCccc
Confidence 455666664 77788999999999999998888776668999998 33222111 11 111
Q ss_pred -EEEccCC--------hh-HHHHHHHHHHHhCCCCcEEEEEeeecC
Q 035738 236 -WILHDWN--------DE-HCLKLLKNCYKSIPEDGKVIAVELMLP 271 (333)
Q Consensus 236 -~vLh~~~--------~~-~~~~lL~~~~~~L~pgG~l~i~e~~~~ 271 (333)
-+|+|.. |+ ...++|.-+.+.|++ |.++| -.+.|
T Consensus 146 DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~-KVl~p 189 (267)
T 3p8z_A 146 DTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCI-KVLNP 189 (267)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEE-EESCC
T ss_pred cEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEE-EEccC
Confidence 6666653 11 123477777899998 66666 43333
No 381
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=93.17 E-value=0.038 Score=42.78 Aligned_cols=69 Identities=12% Similarity=0.079 Sum_probs=51.1
Q ss_pred HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccC-CCcccccccccccccccc
Q 035738 32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDA-SGARRLYSLNSVSKYYVP 107 (333)
Q Consensus 32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~-~~~~~~y~~t~~~~~l~~ 107 (333)
..++.++..|... ++.|..+||+.+++ ++..+.+.++.|...|++.+.... +.....+.+|+.+..+..
T Consensus 40 ~~~~~iL~~l~~~---~~~~~~~la~~l~~----~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~ 109 (147)
T 1z91_A 40 YPQYLALLLLWEH---ETLTVKKMGEQLYL----DSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKE 109 (147)
T ss_dssp HHHHHHHHHHHHH---SEEEHHHHHHTTTC----CHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGG
T ss_pred HHHHHHHHHHHHC---CCCCHHHHHHHHCC----CcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence 3456677777765 48999999999999 999999999999999999986311 111223666777665554
No 382
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=93.10 E-value=0.19 Score=39.39 Aligned_cols=47 Identities=11% Similarity=0.124 Sum_probs=40.7
Q ss_pred HHhChhhHhh-hcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 33 YELGIFEIID-KAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 33 ~~lglfd~L~-~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
.++.++..|. .. ++.|..+||+.+++ ++..+.++++.|...|+|.+.
T Consensus 48 ~~~~iL~~L~~~~---~~~~~~ela~~l~i----~~~tvs~~l~~Le~~Gli~r~ 95 (160)
T 3boq_A 48 AKFDAMAQLARNP---DGLSMGKLSGALKV----TNGNVSGLVNRLIKDGMVVKA 95 (160)
T ss_dssp HHHHHHHHHHHCT---TCEEHHHHHHHCSS----CCSCHHHHHHHHHHHTSEEEC
T ss_pred HHHHHHHHHHHcC---CCCCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEee
Confidence 3556778884 33 58999999999999 999999999999999999986
No 383
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=93.09 E-value=0.044 Score=41.97 Aligned_cols=50 Identities=16% Similarity=0.121 Sum_probs=41.8
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
.+..++..|...| .++.|..+||+.+++ ++..+.+.++.|...|++.+..
T Consensus 32 ~~~~vL~~l~~~~-~~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~ 81 (139)
T 3eco_A 32 EQGHTLGYLYAHQ-QDGLTQNDIAKALQR----TGPTVSNLLRNLERKKLIYRYV 81 (139)
T ss_dssp HHHHHHHHHHHST-TTCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHhcC-CCCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecC
Confidence 4555677777652 138999999999999 9999999999999999999873
No 384
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=93.08 E-value=0.031 Score=43.58 Aligned_cols=48 Identities=13% Similarity=0.092 Sum_probs=41.2
Q ss_pred HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
..+..++..|... ++.|..+||+.+++ ++..+.++++.|...|+|.+.
T Consensus 41 ~~q~~iL~~l~~~---~~~~~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~ 88 (149)
T 4hbl_A 41 YSQYLVMLTLWEE---NPQTLNSIGRHLDL----SSNTLTPMLKRLEQSGWVKRE 88 (149)
T ss_dssp HHHHHHHHHHHHS---SSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEC-
T ss_pred HHHHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeC
Confidence 3455667777765 48999999999999 999999999999999999986
No 385
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=93.07 E-value=0.21 Score=38.83 Aligned_cols=47 Identities=17% Similarity=0.275 Sum_probs=40.9
Q ss_pred HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738 34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
++.++..|... ++.|..+||+.+++ ++..+.+.++.|...|++.+..
T Consensus 39 ~~~iL~~l~~~---~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~ 85 (155)
T 1s3j_A 39 QLFVLASLKKH---GSLKVSEIAERMEV----KPSAVTLMADRLEQKNLIARTH 85 (155)
T ss_dssp HHHHHHHHHHH---SEEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecC
Confidence 34467777765 48999999999999 9999999999999999999863
No 386
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=93.06 E-value=0.04 Score=43.47 Aligned_cols=46 Identities=9% Similarity=0.045 Sum_probs=39.7
Q ss_pred hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738 35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
..++..|... ++.|..+||+.+++ ++..+.++++.|...|+|.+..
T Consensus 53 ~~vL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~ 98 (159)
T 3s2w_A 53 FPFLMRLYRE---DGINQESLSDYLKI----DKGTTARAIQKLVDEGYVFRQR 98 (159)
T ss_dssp HHHHHHHHHS---CSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEec
Confidence 3456666665 48999999999999 9999999999999999999873
No 387
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=92.98 E-value=0.037 Score=43.78 Aligned_cols=47 Identities=13% Similarity=0.130 Sum_probs=41.3
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
.++.++..|... ++.|..+||+.+++ ++..+.++++.|...|+|.+.
T Consensus 54 ~q~~vL~~l~~~---~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~ 100 (161)
T 3e6m_A 54 PKLRLLSSLSAY---GELTVGQLATLGVM----EQSTTSRTVDQLVDEGLAARS 100 (161)
T ss_dssp HHHHHHHHHHHH---SEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEee
Confidence 345577778776 48999999999999 999999999999999999986
No 388
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=92.96 E-value=0.07 Score=39.88 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=41.3
Q ss_pred HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
-.++.++..|.+ ++.|..+||+.+|+ ++..+.+.|+.|...|++...
T Consensus 32 ~~~~~il~~L~~----~~~s~~ela~~l~i----s~stvsr~l~~Le~~Glv~~~ 78 (119)
T 2lkp_A 32 PSRLMILTQLRN----GPLPVTDLAEAIGM----EQSAVSHQLRVLRNLGLVVGD 78 (119)
T ss_dssp HHHHHHHHHHHH----CCCCHHHHHHHHSS----CHHHHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHH----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 456677778877 37999999999999 999999999999999999875
No 389
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=92.92 E-value=0.033 Score=42.79 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=42.0
Q ss_pred HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
..+..++..|... ++.|..+||+.+++ ++..+.+.++.|...|++.+.
T Consensus 36 ~~~~~iL~~l~~~---~~~t~~ela~~l~~----s~~~vs~~l~~Le~~glv~r~ 83 (142)
T 2fbi_A 36 EQQWRVIRILRQQ---GEMESYQLANQACI----LRPSMTGVLARLERDGIVRRW 83 (142)
T ss_dssp HHHHHHHHHHHHH---CSEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEee
Confidence 3456677788776 48999999999999 999999999999999999986
No 390
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=92.90 E-value=0.048 Score=42.33 Aligned_cols=48 Identities=13% Similarity=0.105 Sum_probs=34.4
Q ss_pred HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
+..++..|...+ .++.|..+||+.+++ ++..+.+.++.|...|+|.+.
T Consensus 43 q~~vL~~l~~~~-~~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~ 90 (148)
T 3jw4_A 43 QGRMIGYIYENQ-ESGIIQKDLAQFFGR----RGASITSMLQGLEKKGYIERR 90 (148)
T ss_dssp HHHHHHHHHHHT-TTCCCHHHHHHC----------CHHHHHHHHHHTTSBCCC
T ss_pred HHHHHHHHHhCC-CCCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEee
Confidence 345666776642 148999999999999 999999999999999999986
No 391
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=92.82 E-value=0.056 Score=43.08 Aligned_cols=49 Identities=14% Similarity=0.072 Sum_probs=41.7
Q ss_pred HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
..++.++..|...+ +++|..+||+.+++ ++..+.++++.|...|+|.+.
T Consensus 53 ~~q~~vL~~L~~~~--~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~GlV~r~ 101 (166)
T 3deu_A 53 QTHWVTLHNIHQLP--PDQSQIQLAKAIGI----EQPSLVRTLDQLEDKGLISRQ 101 (166)
T ss_dssp HHHHHHHHHHHHSC--SSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHHHcC--CCCCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEee
Confidence 34566777777632 47999999999999 999999999999999999986
No 392
>3mag_A VP39; methylated adenine, methyltransferase, RNA CAP analog, poly (A) polymerase, mRNA processing, transcription; HET: SAH 3MA; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1bky_A* 1jsz_A* 1v39_A* 1p39_A* 1vp9_A* 2vp3_A* 1eam_A* 1jte_A* 1jtf_A* 4dcg_A* 3mct_A* 1b42_A* 1eqa_A* 1av6_A* 3er9_A* 2gaf_A 3er8_A 2ga9_A* 3erc_A*
Probab=92.78 E-value=0.31 Score=42.25 Aligned_cols=80 Identities=14% Similarity=0.154 Sum_probs=55.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCC----CeEEEeechhHhhhCCCCCCeEEEccCChhHHHHHHHHHHHhCCCCcEEEE
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKYPY----IKGINFDLPHVIEHVPPHPCMWILHDWNDEHCLKLLKNCYKSIPEDGKVIA 265 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~p~----~~~~~~D~~~~~~~a~~~~gv~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i 265 (333)
.+..|+=||||.|.+...|.+.+|+ ++.+.+|-.......+..++|.+...+-++.. +++.++.+....+++|
T Consensus 60 ~~~~VVYVGSApG~HL~~L~~~fp~~f~~ikWvLiDPap~~~~l~~~~NV~li~~fvde~d---l~~l~~~~~~~~iLLI 136 (307)
T 3mag_A 60 DGATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDGRHHDPILNGLRDVTLVTRFVDEEY---LRSIKKQLHPSKIILI 136 (307)
T ss_dssp TTCEEEEESCCSCHHHHHHHHHHHHTTCCCEEEEEESSCCCGGGTTCTTEEEEECCCCHHH---HHHHHHHHTTSCEEEE
T ss_pred CCcEEEEecccCccHHHHHHHhchhhCCCeEEEEEcCCcchhhhcCCCcEEEEeccCCHHH---HHHHHHhccCCCEEEE
Confidence 4569999999999999999988775 69999997332333344466655555445543 4455555566789999
Q ss_pred EeeecCC
Q 035738 266 VELMLPE 272 (333)
Q Consensus 266 ~e~~~~~ 272 (333)
.|....+
T Consensus 137 SDIRS~r 143 (307)
T 3mag_A 137 SDVRSKR 143 (307)
T ss_dssp ECCCC--
T ss_pred EEecCCC
Confidence 9986654
No 393
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=92.74 E-value=0.094 Score=40.74 Aligned_cols=46 Identities=22% Similarity=0.444 Sum_probs=40.9
Q ss_pred HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
+..|++.|.+. ++.|..|||+++|+ ++..+.+.++.|...|++.+.
T Consensus 7 d~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 7 DLNIIEELKKD---SRLSMRELGRKIKL----SPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHHC---SCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 45678888875 58999999999999 999999999999999999864
No 394
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=92.73 E-value=0.11 Score=45.50 Aligned_cols=34 Identities=15% Similarity=-0.099 Sum_probs=27.6
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHC-----CCCeEEEeec
Q 035738 189 DNIKQLVDVGGGIGVTLQAITTKY-----PYIKGINFDL 222 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~~~~-----p~~~~~~~D~ 222 (333)
..+.+|||+|+.+|..+..++... ++.+++++|.
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~Dt 143 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADS 143 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEEC
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEEC
Confidence 456899999999999998876653 5778988884
No 395
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=92.67 E-value=0.2 Score=38.48 Aligned_cols=64 Identities=11% Similarity=0.175 Sum_probs=48.3
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccc---cccccccccccc
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARR---LYSLNSVSKYYV 106 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~---~y~~t~~~~~l~ 106 (333)
.++.++..|...| + |..+||+.+++ ++..+.+.++.|...|++.+.... .+. .+.+|+.+..+.
T Consensus 38 ~~~~iL~~l~~~~---~-~~~~la~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~--~D~R~~~~~LT~~G~~~~ 104 (144)
T 3f3x_A 38 LDFSILKATSEEP---R-SMVYLANRYFV----TQSAITAAVDKLEAKGLVRRIRDS--KDRRIVIVEITPKGRQVL 104 (144)
T ss_dssp HHHHHHHHHHHSC---E-EHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEET--TEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHCC---C-CHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEeccCC--CCCceEEEEECHHHHHHH
Confidence 4566788888763 5 99999999999 999999999999999999987310 111 366666665443
No 396
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=92.67 E-value=0.098 Score=40.90 Aligned_cols=47 Identities=15% Similarity=0.141 Sum_probs=41.2
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
.+..|+..|.+. ++.|..|||+++|+ ++..+.+.++.|...|++.+.
T Consensus 8 ~~~~iL~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 8 IDRILVRELAAD---GRATLSELATRAGL----SVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 355677888765 58999999999999 999999999999999999764
No 397
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=92.65 E-value=0.094 Score=45.71 Aligned_cols=87 Identities=13% Similarity=0.122 Sum_probs=56.4
Q ss_pred HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhC---CCC--------CC----------e
Q 035738 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHV---PPH--------PC----------M 235 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a---~~~--------~g----------v 235 (333)
..++.+.+. +....+|||+||++|.++...+....-.+++++|+ ..-.+.- +++ .+ +
T Consensus 83 L~ei~~~~~-l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~~ 161 (321)
T 3lkz_A 83 LRWLVERRF-LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSECC 161 (321)
T ss_dssp HHHHHHTTS-CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCCC
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCCC
Confidence 445556544 67778999999999999998887776667899998 3311100 000 01 1
Q ss_pred -EEEccCC--------hh-HHHHHHHHHHHhCCCC-cEEEE
Q 035738 236 -WILHDWN--------DE-HCLKLLKNCYKSIPED-GKVIA 265 (333)
Q Consensus 236 -~vLh~~~--------~~-~~~~lL~~~~~~L~pg-G~l~i 265 (333)
.++.|.. |+ ...++|.-+.+.|+++ |.++|
T Consensus 162 D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~ 202 (321)
T 3lkz_A 162 DTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCV 202 (321)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CEEEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEE
Confidence 5666653 11 1235777778999888 77776
No 398
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=92.62 E-value=0.36 Score=41.27 Aligned_cols=33 Identities=24% Similarity=0.201 Sum_probs=27.0
Q ss_pred HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHH
Q 035738 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTK 211 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~ 211 (333)
..++.+.. -+.+..+|||+||+.|.++...++.
T Consensus 62 L~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~ 94 (269)
T 2px2_A 62 LRWLVERR-FVQPIGKVVDLGCGRGGWSYYAATM 94 (269)
T ss_dssp HHHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTS
T ss_pred HHHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhh
Confidence 44565654 3788999999999999999998885
No 399
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=92.57 E-value=0.085 Score=38.01 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
++.+..+||+.+++ +...+.|.|..|...|+|.+..
T Consensus 35 ~~~s~~eLa~~l~l----~~stLsR~l~rLe~~GLV~r~~ 70 (96)
T 2obp_A 35 TPWSLPKIAKRAQL----PMSVLRRVLTQLQAAGLADVSV 70 (96)
T ss_dssp CCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCcCHHHHHHHhCC----chhhHHHHHHHHHHCCCEEeec
Confidence 68999999999999 9999999999999999999864
No 400
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=92.50 E-value=0.11 Score=43.04 Aligned_cols=69 Identities=14% Similarity=0.228 Sum_probs=52.0
Q ss_pred HHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccC---CCcccccccccccc
Q 035738 27 MAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDA---SGARRLYSLNSVSK 103 (333)
Q Consensus 27 ~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~---~~~~~~y~~t~~~~ 103 (333)
.+|..-.++.|+..|.. +|.|..+||+.+|+ ++..+.+.|+.|...|+|...... |...-.|++|+...
T Consensus 10 kaL~~~~rl~IL~~L~~----~~~s~~eLa~~l~i----s~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~~ 81 (202)
T 2p4w_A 10 DVLGNETRRRILFLLTK----RPYFVSELSRELGV----GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLR 81 (202)
T ss_dssp HHHHSHHHHHHHHHHHH----SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEE
T ss_pred HHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHHH
Confidence 34445566777777865 59999999999999 999999999999999999986421 12234577766543
No 401
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=92.40 E-value=0.051 Score=38.98 Aligned_cols=52 Identities=13% Similarity=0.209 Sum_probs=39.1
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccccc
Q 035738 49 KLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYV 106 (333)
Q Consensus 49 ~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~ 106 (333)
+.|..+||+.+++ ++..+.++++.|...|+|..+ .++ ....+.+|+.+..+.
T Consensus 30 ~~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~~~-~d~-R~~~v~LT~~G~~~~ 81 (95)
T 2qvo_A 30 DVYIQYIASKVNS----PHSYVWLIIKKFEEAKMVECE-LEG-RTKIIRLTDKGQKIA 81 (95)
T ss_dssp CEEHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEE-EET-TEEEEEECHHHHHHH
T ss_pred CcCHHHHHHHHCc----CHHHHHHHHHHHHHCcCccCC-CCC-CeEEEEEChhHHHHH
Confidence 4899999999999 999999999999999999433 100 112377777665443
No 402
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=92.40 E-value=0.13 Score=40.35 Aligned_cols=48 Identities=15% Similarity=0.086 Sum_probs=39.4
Q ss_pred HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738 34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
+..++..|...+ ++.+..+||+.+++ ++..+.++++.|...|+|.+.+
T Consensus 33 q~~vL~~L~~~~--~~~~~~eLa~~l~~----~~~tvs~~v~~Le~~GlV~R~~ 80 (151)
T 4aik_A 33 HWVTLYNINRLP--PEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLITRHT 80 (151)
T ss_dssp HHHHHHHHHHSC--TTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcC--CCCcHHHHHHHHCc----CHHHHHHHHHHHHhCCCeEeec
Confidence 334556666543 36788999999999 9999999999999999999874
No 403
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=92.39 E-value=0.083 Score=41.30 Aligned_cols=47 Identities=23% Similarity=0.316 Sum_probs=41.5
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
.+..|++.|.+. ++.|..|||+++|+ ++..+.+.++.|...|++.+.
T Consensus 4 ~~~~il~~L~~~---~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 4 IDLRILKILQYN---AKYSLDEIAREIRI----PKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHHHHHTTC---TTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEE
Confidence 356678888875 58999999999999 999999999999999999864
No 404
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=92.38 E-value=0.1 Score=40.92 Aligned_cols=70 Identities=13% Similarity=0.083 Sum_probs=52.6
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhC-CCCCCCcccHHHHHHHHhcccceeeeccC------CCcccccccccccccc
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLT-TKNKDAPMMLDRILRLLASYSVVECSLDA------SGARRLYSLNSVSKYY 105 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g-~~~~~~~~~l~~lL~~L~~~g~l~~~~~~------~~~~~~y~~t~~~~~l 105 (333)
.++-|++.|..++ .+..|+++|++.++ + ...-+++.|+.|+..|+|.+.... |..-..|.+|+.+..+
T Consensus 30 tR~~IL~~Ll~~p-~~~~ta~eL~~~l~~l----S~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~ 104 (151)
T 3u1d_A 30 TRLDVLHQILAQP-DGVLSVEELLYRNPDE----TEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIAL 104 (151)
T ss_dssp HHHHHHHHHHHST-TSCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHH
T ss_pred HHHHHHHHHHcCC-CCCCCHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHH
Confidence 5666777776642 24689999999999 8 999999999999999999976321 1112368999888755
Q ss_pred cc
Q 035738 106 VP 107 (333)
Q Consensus 106 ~~ 107 (333)
+.
T Consensus 105 l~ 106 (151)
T 3u1d_A 105 LR 106 (151)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 405
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=92.37 E-value=0.041 Score=41.82 Aligned_cols=48 Identities=13% Similarity=0.205 Sum_probs=40.0
Q ss_pred HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
+..++..|...+ .++.|..+||+.+++ ++..+.++++.|...|++.+.
T Consensus 39 q~~vL~~l~~~~-~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~ 86 (127)
T 2frh_A 39 EFAVLTYISENK-EKEYYLKDIINHLNY----KQPQVVKAVKILSQEDYFDKK 86 (127)
T ss_dssp HHHHHHHHHHTC-CSEEEHHHHHHHSSS----HHHHHHHHHHHHHHTTSSCCB
T ss_pred HHHHHHHHHhcc-CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec
Confidence 445666676541 148999999999999 999999999999999999985
No 406
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=92.33 E-value=0.11 Score=41.14 Aligned_cols=47 Identities=15% Similarity=0.332 Sum_probs=41.5
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
.+..|++.|.+. ++.|..|||+++|+ ++..+.+.++.|...|++.+.
T Consensus 11 ~~~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 11 TDIKILQVLQEN---GRLTNVELSERVAL----SPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEeee
Confidence 345678888875 58999999999999 999999999999999999964
No 407
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=92.29 E-value=0.077 Score=39.09 Aligned_cols=47 Identities=21% Similarity=0.330 Sum_probs=39.1
Q ss_pred HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
++.|+..|...| .+.|..+||+.+|+ +...+++.|+.|...|++...
T Consensus 20 ~l~Il~~l~~~g--~~~s~~eLa~~lgv----s~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 20 VIDVLRILLDKG--TEMTDEEIANQLNI----KVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp THHHHHHHHHHC--SCBCHHHHHHTTTS----CHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 445666664432 37999999999999 999999999999999999875
No 408
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=92.01 E-value=0.088 Score=52.46 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=34.7
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCC---CCeEEEeec-hhHhhhC
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYP---YIKGINFDL-PHVIEHV 229 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a 229 (333)
.....+|+|.|||+|.++..++++.+ ..+++++|+ +.+++.|
T Consensus 319 l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LA 364 (878)
T 3s1s_A 319 LTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELL 364 (878)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHH
T ss_pred CCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHH
Confidence 34578999999999999999998876 457899999 7776655
No 409
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=91.92 E-value=0.094 Score=37.62 Aligned_cols=61 Identities=13% Similarity=0.169 Sum_probs=48.3
Q ss_pred HhChhhHhhhcCCCCCCCHHHHHH-HhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccccccccc
Q 035738 34 ELGIFEIIDKAGPGAKLSASDIAA-QLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVP 107 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~ela~-~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~~ 107 (333)
+..|+-.|+.. ++.|+.+||+ .+++ +...+.|=++.|...|+++.+ .++ +.+|+.+..++.
T Consensus 18 QfsiL~~L~~~---~~~t~~~Lae~~l~~----drstvsrnl~~L~r~GlVe~~-----~~D-l~LT~~G~~~l~ 79 (95)
T 1bja_A 18 TATILITIAKK---DFITAAEVREVHPDL----GNAVVNSNIGVLIKKGLVEKS-----GDG-LIITGEAQDIIS 79 (95)
T ss_dssp HHHHHHHHHHS---TTBCHHHHHHTCTTS----CHHHHHHHHHHHHTTTSEEEE-----TTE-EEECHHHHHHHH
T ss_pred HHHHHHHHHHC---CCCCHHHHHHHHhcc----cHHHHHHHHHHHHHCCCeecC-----CCC-eeeCHhHHHHHH
Confidence 34556677776 4999999999 9999 999999999999999999933 133 778877765553
No 410
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=91.85 E-value=0.25 Score=36.90 Aligned_cols=70 Identities=17% Similarity=0.241 Sum_probs=52.2
Q ss_pred HHHHHHhChhhHhhhcCCCCCCCHHHHHHHhC--------CCCCCCc-ccHHHHHHHHhcccceeeecc--CCCcccccc
Q 035738 29 MQAVYELGIFEIIDKAGPGAKLSASDIAAQLT--------TKNKDAP-MMLDRILRLLASYSVVECSLD--ASGARRLYS 97 (333)
Q Consensus 29 l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g--------~~~~~~~-~~l~~lL~~L~~~g~l~~~~~--~~~~~~~y~ 97 (333)
+.-..++-|+..|.+ +|.+.-+|++.+. + ++ ..+.+.|+-|...|+|..... +|+....|+
T Consensus 10 ~~~~~~~~IL~~L~~----~~~~gyel~~~l~~~g~~~~~i----s~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~ 81 (118)
T 2esh_A 10 RGWWLASTILLLVAE----KPSHGYELAERLAEFGIEIPGI----GHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYR 81 (118)
T ss_dssp HHHHHHHHHHHHHHH----SCBCHHHHHHHHHTTCCSSTTC----CCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEE
T ss_pred ccchHHHHHHHHHHc----CCCCHHHHHHHHHHhCCcccCC----CCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEE
Confidence 344456667777876 4899999999983 6 78 899999999999999988642 222234588
Q ss_pred ccccccccc
Q 035738 98 LNSVSKYYV 106 (333)
Q Consensus 98 ~t~~~~~l~ 106 (333)
+|+.+...+
T Consensus 82 LT~~G~~~l 90 (118)
T 2esh_A 82 ITPQGKLYL 90 (118)
T ss_dssp ECHHHHHHH
T ss_pred EChHHHHHH
Confidence 888776544
No 411
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=91.83 E-value=0.12 Score=40.39 Aligned_cols=46 Identities=15% Similarity=0.293 Sum_probs=41.0
Q ss_pred HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
+..|++.|.+. ++.|..|||+++|+ ++..+.+.++.|...|++.+.
T Consensus 10 d~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 55 (152)
T 2cg4_A 10 DRGILEALMGN---ARTAYAELAKQFGV----SPETIHVRVEKMKQAGIITGA 55 (152)
T ss_dssp HHHHHHHHHHC---TTSCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHcCCcceE
Confidence 45678888875 58999999999999 999999999999999999964
No 412
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=91.82 E-value=0.085 Score=36.59 Aligned_cols=51 Identities=16% Similarity=0.291 Sum_probs=40.0
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
.+..|++.|.+. ++.|+.||++.++.+.+.++.-+.++|+.|...|+|.+.
T Consensus 10 ~e~~vL~~L~~~---~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~ 60 (82)
T 1p6r_A 10 AELEVMKVIWKH---SSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHH 60 (82)
T ss_dssp HHHHHHHHHHTS---SSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcC---CCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEE
Confidence 355677777764 589999999999730000688899999999999999987
No 413
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=91.77 E-value=0.09 Score=43.96 Aligned_cols=50 Identities=16% Similarity=0.270 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccccc
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYV 106 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~ 106 (333)
++.+..+||+.+++ ++..+.+.++.|...|++.+. ....+.+|+.+..+.
T Consensus 19 ~~~~~~~lA~~l~v----s~~tvs~~l~~Le~~GlV~r~-----~~~~i~LT~~G~~~~ 68 (214)
T 3hrs_A 19 NKITNKEIAQLMQV----SPPAVTEMMKKLLAEELLIKD-----KKAGYLLTDLGLKLV 68 (214)
T ss_dssp SCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----TTTEEEECHHHHHHH
T ss_pred CCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEEe-----cCCCeEECHHHHHHH
Confidence 58999999999999 999999999999999999997 245677787775444
No 414
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=91.76 E-value=0.068 Score=38.84 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=40.0
Q ss_pred HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
+..|.+.|.+. ++.|+.||++.++.+.+-.+.-+.++|+-|...|+|.+.
T Consensus 37 e~~VL~~L~~~---~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~ 86 (99)
T 2k4b_A 37 ELIVMRVIWSL---GEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTE 86 (99)
T ss_dssp CSHHHHHHHHH---SCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEE
Confidence 45677788765 489999999999851111467899999999999999987
No 415
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=91.71 E-value=0.13 Score=40.20 Aligned_cols=47 Identities=15% Similarity=0.304 Sum_probs=41.5
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
.+..|++.|.+. ++.|..|||+++|+ ++..+.+.++.|...|++.+.
T Consensus 10 ~d~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 10 VDMQLVKILSEN---SRLTYRELADILNT----TRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHTTS----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 355688888875 58999999999999 999999999999999999864
No 416
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=91.62 E-value=0.11 Score=42.42 Aligned_cols=72 Identities=11% Similarity=0.063 Sum_probs=52.6
Q ss_pred HHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccC-CCcccccccccccccccc
Q 035738 31 AVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDA-SGARRLYSLNSVSKYYVP 107 (333)
Q Consensus 31 ~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~-~~~~~~y~~t~~~~~l~~ 107 (333)
+..+..++..|...+ .+++|..+||+.+++ ++..+.++++.|...|+|.+.... +...-.+.+|+.+..+..
T Consensus 40 t~~q~~vL~~L~~~~-~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 112 (189)
T 3nqo_A 40 TSRQYMTILSILHLP-EEETTLNNIARKMGT----SKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMV 112 (189)
T ss_dssp CHHHHHHHHHHHHSC-GGGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHH
T ss_pred CHHHHHHHHHHHhcc-CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHH
Confidence 445666777777521 158999999999999 999999999999999999987421 111234677777765543
No 417
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=91.56 E-value=0.11 Score=40.66 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=41.2
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
.+..|++.|.+. ++.|..+||+++|+ ++..+.+.++.|...|++.+.
T Consensus 8 ~~~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 8 IDKKIIKILQND---GKAPLREISKITGL----AESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHCS----CHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 345678888875 58999999999999 999999999999999999864
No 418
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=91.48 E-value=0.16 Score=39.18 Aligned_cols=44 Identities=20% Similarity=0.254 Sum_probs=37.2
Q ss_pred hhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 37 IFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 37 lfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
++..|.... ++.|..|||+.+|+ ++..+.+.|+.|...|++.+.
T Consensus 31 il~~L~~~~--~~~t~~ela~~l~~----~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 31 VYAILYLSD--KPLTISDIMEELKI----SKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp HHHHHHHCS--SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHcC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 455554211 48999999999999 999999999999999999986
No 419
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=91.46 E-value=0.15 Score=36.93 Aligned_cols=35 Identities=11% Similarity=0.234 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
++.|..|||+.+|+ +..-+.+.|+.|...|++.+.
T Consensus 35 ~~~t~~ela~~l~i----s~~tv~~~l~~L~~~g~v~~~ 69 (109)
T 2d1h_A 35 KPITSEELADIFKL----SKTTVENSLKKLIELGLVVRT 69 (109)
T ss_dssp SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee
Confidence 48999999999999 999999999999999999986
No 420
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=91.44 E-value=0.16 Score=40.73 Aligned_cols=47 Identities=21% Similarity=0.350 Sum_probs=41.4
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
.+..|++.|.+. ++.|..|||+++|+ ++..+.+.++.|...|++.+.
T Consensus 18 ~d~~IL~~L~~~---~~~s~~eLA~~lgl----S~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 18 LDRNILRLLKKD---ARLTISELSEQLKK----PESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence 345678888875 58999999999999 999999999999999999864
No 421
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=91.43 E-value=0.17 Score=38.58 Aligned_cols=52 Identities=17% Similarity=0.175 Sum_probs=44.2
Q ss_pred HHHHHhChhhHhhhcCCCCCCCHHHHHHHh-----CCCCCCCcccHHHHHHHHhcccceeeec
Q 035738 30 QAVYELGIFEIIDKAGPGAKLSASDIAAQL-----TTKNKDAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 30 ~~a~~lglfd~L~~~~~~g~~t~~ela~~~-----g~~~~~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
.+..+.-|++.|...+ ++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+..
T Consensus 9 ~T~qR~~Il~~l~~~~--~~~sa~ei~~~l~~~~~~i----s~~TVYR~L~~L~e~Glv~~~~ 65 (131)
T 2o03_A 9 STRQRAAISTLLETLD--DFRSAQELHDELRRRGENI----GLTTVYRTLQSMASSGLVDTLH 65 (131)
T ss_dssp HHHHHHHHHHHHHHCC--SCEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHTTTSEEEEE
T ss_pred CCHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCEEEEE
Confidence 3556777889998643 589999999999 67 8889999999999999999874
No 422
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=91.38 E-value=0.077 Score=42.85 Aligned_cols=50 Identities=10% Similarity=0.119 Sum_probs=41.2
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
.++.++..|...++.++.|..+||+.+++ ++..+.+.++.|...|+|.+.
T Consensus 70 ~~~~iL~~L~~~~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~ 119 (181)
T 2fbk_A 70 AGWDLLLTLYRSAPPEGLRPTELSALAAI----SGPSTSNRIVRLLEKGLIERR 119 (181)
T ss_dssp HHHHHHHHHHHHCCSSCBCHHHHHHHCSC----CSGGGSSHHHHHHHHTSEECC
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCEEec
Confidence 35557788877541113999999999999 999999999999999999986
No 423
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=91.36 E-value=0.19 Score=41.28 Aligned_cols=51 Identities=16% Similarity=0.249 Sum_probs=44.1
Q ss_pred HHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 28 AMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 28 ~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
++....+..|+..|.+ |+.|..|||+.+|+ ++..+.+.++.|...|++.+.
T Consensus 16 ~l~d~~~~~IL~~L~~----~~~s~~eLA~~lgl----S~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 16 VMLEDTRRKILKLLRN----KEMTISQLSEILGK----TPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHSHHHHHHHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HhCCHHHHHHHHHHHc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 3344566778888884 48999999999999 999999999999999999976
No 424
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=91.19 E-value=0.14 Score=41.08 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=42.4
Q ss_pred HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
..+..|++.|.+. ++.|..|||+++|+ .+..+.+.|+.|...|++.+.
T Consensus 27 ~~d~~IL~~L~~~---~~~s~~eLA~~lgl----S~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 27 EIDKKIIKILQND---GKAPLREISKITGL----AESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp HHHHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee
Confidence 3566788888875 58999999999999 999999999999999999863
No 425
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=91.18 E-value=0.087 Score=50.58 Aligned_cols=51 Identities=14% Similarity=0.034 Sum_probs=35.2
Q ss_pred HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCC---------------CCeEEEeec-hhHhhhCC
Q 035738 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYP---------------YIKGINFDL-PHVIEHVP 230 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p---------------~~~~~~~D~-~~~~~~a~ 230 (333)
+..+++.+. .. ..+|+|.+||+|.++..+.+..+ ..+++|+|+ +.++..|+
T Consensus 234 v~lmv~ll~-p~-~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~ 300 (544)
T 3khk_A 234 VTLIVEMLE-PY-KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAA 300 (544)
T ss_dssp HHHHHHHHC-CC-SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHH
T ss_pred HHHHHHHHh-cC-CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHH
Confidence 344444443 32 34999999999999988765432 567899999 77766554
No 426
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=91.15 E-value=0.085 Score=41.20 Aligned_cols=48 Identities=21% Similarity=0.339 Sum_probs=33.8
Q ss_pred hChhhHhhhcCC--CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 35 LGIFEIIDKAGP--GAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 35 lglfd~L~~~~~--~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
..++..|...++ ++++|..+||+.+++ ++..+.++++.|...|+|++.
T Consensus 36 ~~vL~~l~~~~~~~~~~~t~~eLa~~l~~----~~~tvsr~v~~Le~~glVr~~ 85 (148)
T 4fx0_A 36 FSTLAVISLSEGSAGIDLTMSELAARIGV----ERTTLTRNLEVMRRDGLVRVM 85 (148)
T ss_dssp HHHHHHHHC---------CHHHHHHHHTC----CHHHHHHHHHHHHHTTSBC--
T ss_pred HHHHHHHHHhcCCCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEee
Confidence 344555654321 257999999999999 999999999999999999654
No 427
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=90.96 E-value=0.26 Score=38.31 Aligned_cols=62 Identities=18% Similarity=0.146 Sum_probs=47.1
Q ss_pred HHHHhChhhHhhhcCCCCCCCHHHHHHHh-----CCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccc
Q 035738 31 AVYELGIFEIIDKAGPGAKLSASDIAAQL-----TTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLN 99 (333)
Q Consensus 31 ~a~~lglfd~L~~~~~~g~~t~~ela~~~-----g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t 99 (333)
+..+.-|++.|...+ ++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+...++ ...+|.++
T Consensus 21 T~qR~~Il~~L~~~~--~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~-~~~~Y~~~ 87 (145)
T 2fe3_A 21 TPQRHAILEYLVNSM--AHPTADDIYKALEGKFPNM----SVATVYNNLRVFRESGLVKELTYGD-ASSRFDFV 87 (145)
T ss_dssp CHHHHHHHHHHHHCS--SCCCHHHHHHHHGGGCTTC----CHHHHHHHHHHHHHTTSEEEECCTT-SCCEEEEC
T ss_pred CHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCC----ChhhHHHHHHHHHHCCCEEEEeeCC-CceEEECC
Confidence 445666889997643 589999999999 56 7888999999999999999874221 23456543
No 428
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=90.95 E-value=0.14 Score=39.43 Aligned_cols=46 Identities=22% Similarity=0.341 Sum_probs=39.9
Q ss_pred HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
+..|+..|... ++.|..|||+++|+ ++..+.+.++.|...|++.+.
T Consensus 6 ~~~il~~L~~~---~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 6 DKIILEILEKD---ARTPFTEIAKKLGI----SETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEecc
Confidence 44567778765 48999999999999 999999999999999999854
No 429
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=90.89 E-value=0.36 Score=32.76 Aligned_cols=52 Identities=12% Similarity=0.067 Sum_probs=40.5
Q ss_pred hhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccc
Q 035738 38 FEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLN 99 (333)
Q Consensus 38 fd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t 99 (333)
++.|..+ +..|+.+||.++|+ +..-+.|.|.-|...|.|...+ ..+..|..+
T Consensus 21 i~~L~~~---~~~Ta~~IAkkLg~----sK~~vNr~LY~L~kkG~V~~~~---~~PP~W~~~ 72 (75)
T 1sfu_A 21 VLSLNTN---DYTTAISLSNRLKI----NKKKINQQLYKLQKEDTVKMVP---SNPPKWFKN 72 (75)
T ss_dssp HHTSCTT---CEECHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC---CSSCEEEEC
T ss_pred HHhCCCC---cchHHHHHHHHHCC----CHHHHHHHHHHHHHCCCEecCC---CCCCCccCC
Confidence 3355553 35999999999999 8888999999999999999873 135555544
No 430
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=90.85 E-value=0.15 Score=40.56 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=41.8
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
.+..|++.|.+. +++|..+||+++|+ .+..+.+-++.|...|++.+.
T Consensus 4 ~d~~il~~L~~~---~~~s~~~la~~lg~----s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 4 LDRKILRILQED---STLAVADLAKKVGL----STTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHHTTC---SCSCHHHHHHHHTC----CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeec
Confidence 356688889876 59999999999999 999999999999999999854
No 431
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=90.82 E-value=0.3 Score=44.04 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=30.7
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhC
Q 035738 191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHV 229 (333)
Q Consensus 191 ~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a 229 (333)
...|||||.|.|.++..|+++...-+++++++ +..++..
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L 98 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFL 98 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHH
Confidence 57899999999999999999754457888887 5554433
No 432
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=90.73 E-value=0.086 Score=43.78 Aligned_cols=66 Identities=15% Similarity=-0.030 Sum_probs=48.7
Q ss_pred HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccC-CCccccccccccccccc
Q 035738 34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDA-SGARRLYSLNSVSKYYV 106 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~-~~~~~~y~~t~~~~~l~ 106 (333)
+..++..|... ++.|..+||+.+++ ++..+.++++.|...|+|.+.... +...-.+.+|+.+..+.
T Consensus 50 q~~iL~~L~~~---~~~t~~eLa~~l~i----~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 116 (207)
T 2fxa_A 50 EHHILWIAYQL---NGASISEIAKFGVM----HVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVF 116 (207)
T ss_dssp HHHHHHHHHHH---TSEEHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHC---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHH
Confidence 45567777765 48999999999999 999999999999999999987311 00111456777776544
No 433
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=90.55 E-value=0.22 Score=40.84 Aligned_cols=35 Identities=20% Similarity=0.077 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
-|.|..|||+++|+ +...+.+.|+.|...|++.+.
T Consensus 23 ~~~s~~eia~~lgl----~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 23 YPPSVREIARRFRI----TPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp SCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECC
T ss_pred CCCCHHHHHHHcCC----CcHHHHHHHHHHHHCCCEEec
Confidence 48999999999999 777899999999999999986
No 434
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=90.51 E-value=0.12 Score=38.80 Aligned_cols=75 Identities=9% Similarity=0.131 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhC------CCCCCCcccHHHHHHHHhcccceeeecc---CCCcccc
Q 035738 25 LPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLT------TKNKDAPMMLDRILRLLASYSVVECSLD---ASGARRL 95 (333)
Q Consensus 25 ~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g------~~~~~~~~~l~~lL~~L~~~g~l~~~~~---~~~~~~~ 95 (333)
..+.+.-..++-|+..|.+ +|.+.-+|++.+. + ++..+.+.|+.|...|+++.... +|+....
T Consensus 7 ~~~l~~g~l~~~IL~lL~~----~p~~gyel~~~l~~~~~~~i----~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~ 78 (117)
T 3elk_A 7 RERILHGLITLYILKELVK----RPMHGYELQKSMFETTGQAL----PQGSIYILLKTMKERGFVISESSVNEKGQQLTV 78 (117)
T ss_dssp CCHHHHHHHHHHHHHHHHH----SCEEHHHHHHHHHHHHSCCC----CTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEE
T ss_pred HHHHHhhHHHHHHHHHHHc----CCCCHHHHHHHHHHHhCCCC----CcchHHHHHHHHHHCCCEEEEeeecCCCCCceE
Confidence 3455566667778888887 4899999999886 7 78999999999999999997632 2223346
Q ss_pred cccccccccccc
Q 035738 96 YSLNSVSKYYVP 107 (333)
Q Consensus 96 y~~t~~~~~l~~ 107 (333)
|++|+.+...+.
T Consensus 79 Y~lT~~G~~~l~ 90 (117)
T 3elk_A 79 YHITDAGKKFLC 90 (117)
T ss_dssp EEECHHHHHHHH
T ss_pred EEECHHHHHHHH
Confidence 889988875543
No 435
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=90.51 E-value=0.18 Score=32.00 Aligned_cols=47 Identities=13% Similarity=0.201 Sum_probs=41.3
Q ss_pred HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
+-.|++.+..+| |-+.++.++++.|+ +..-+..+|+-|...|++.-+
T Consensus 12 e~~lL~yIr~sG--GildI~~~a~kygV----~kdeV~~~LrrLe~KGLI~le 58 (59)
T 2xvc_A 12 ERELLDYIVNNG--GFLDIEHFSKVYGV----EKQEVVKLLEALKNKGLIAVE 58 (59)
T ss_dssp HHHHHHHHHHTT--SEEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcC--CEEeHHHHHHHhCC----CHHHHHHHHHHHHHCCCeecc
Confidence 345778888776 89999999999999 999999999999999999854
No 436
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=90.49 E-value=0.11 Score=39.58 Aligned_cols=34 Identities=12% Similarity=0.183 Sum_probs=32.3
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 49 KLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 49 ~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
..|.++||+.+|+ ++.-+.+.++.|...|++.+.
T Consensus 51 ~ps~~~LA~~l~~----s~~~V~~~l~~Le~kGlI~~~ 84 (128)
T 2vn2_A 51 FPTPAELAERMTV----SAAECMEMVRRLLQKGMIAIE 84 (128)
T ss_dssp SCCHHHHHHTSSS----CHHHHHHHHHHHHHTTSSEEC
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 3799999999999 999999999999999999986
No 437
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=90.48 E-value=0.27 Score=36.80 Aligned_cols=72 Identities=21% Similarity=0.262 Sum_probs=52.9
Q ss_pred HHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHh------CCCCCCCcccHHHHHHHHhcccceeeecc---CCCcccccc
Q 035738 27 MAMQAVYELGIFEIIDKAGPGAKLSASDIAAQL------TTKNKDAPMMLDRILRLLASYSVVECSLD---ASGARRLYS 97 (333)
Q Consensus 27 ~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~------g~~~~~~~~~l~~lL~~L~~~g~l~~~~~---~~~~~~~y~ 97 (333)
+.++-.+++=|+..|.+ +|.+.-+|++.+ ++ ++..+...|+-|...|+|+.... +|+....|+
T Consensus 6 ~l~~g~l~~~IL~lL~~----~p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~ 77 (117)
T 4esf_A 6 EMLKGSLEGCVLEIISR----RETYGYEITRHLNDLGFTEV----VEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYS 77 (117)
T ss_dssp HHHHHHHHHHHHHHHHH----SCBCHHHHHHHHHHHTCTTC----CHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEE
T ss_pred HHHHChHHHHHHHHHHc----CCCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEE
Confidence 34445556666677777 489999999998 67 89999999999999999998631 223344588
Q ss_pred ccccccccc
Q 035738 98 LNSVSKYYV 106 (333)
Q Consensus 98 ~t~~~~~l~ 106 (333)
+|+.+...+
T Consensus 78 LT~~G~~~l 86 (117)
T 4esf_A 78 LNEAGRQEL 86 (117)
T ss_dssp ECHHHHHHH
T ss_pred ECHHHHHHH
Confidence 888886544
No 438
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=90.40 E-value=0.25 Score=36.82 Aligned_cols=73 Identities=14% Similarity=0.233 Sum_probs=54.1
Q ss_pred HHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHh--------CCCCCCCcccHHHHHHHHhcccceeeecc---CCCccc
Q 035738 26 PMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQL--------TTKNKDAPMMLDRILRLLASYSVVECSLD---ASGARR 94 (333)
Q Consensus 26 ~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~--------g~~~~~~~~~l~~lL~~L~~~g~l~~~~~---~~~~~~ 94 (333)
.+.++-..++=|...|.+ +|.+.-+|.+.+ ++ ++..+.+.|+-|...|+++.... +|+...
T Consensus 6 ~~~~~g~l~~~IL~~L~~----~~~~Gyei~~~l~~~~~~~~~i----~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk 77 (116)
T 3f8b_A 6 KEMLRAQTNVILLNVLKQ----GDNYVYGIIKQVKEASNGEMEL----NEATLYTIFKRLEKDGIISSYWGDESQGGRRK 77 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH----CCBCHHHHHHHHHHHTTTCCCC----CHHHHHHHHHHHHHTTSEEEEEEC----CCEE
T ss_pred HHHHhchHHHHHHHHHHh----CCCCHHHHHHHHHHHhCCCCCC----CcchHHHHHHHHHHCCCEEEEeeccCCCCCce
Confidence 445555566667778887 489999999988 56 89999999999999999997631 233344
Q ss_pred cccccccccccc
Q 035738 95 LYSLNSVSKYYV 106 (333)
Q Consensus 95 ~y~~t~~~~~l~ 106 (333)
.|++|+.+...+
T Consensus 78 ~Y~LT~~G~~~l 89 (116)
T 3f8b_A 78 YYRLTEIGHENM 89 (116)
T ss_dssp EEEECHHHHHHH
T ss_pred EEEECHHHHHHH
Confidence 588888876544
No 439
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=90.31 E-value=0.052 Score=46.00 Aligned_cols=69 Identities=6% Similarity=0.152 Sum_probs=51.9
Q ss_pred HHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCC----Cccccccccccc
Q 035738 27 MAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDAS----GARRLYSLNSVS 102 (333)
Q Consensus 27 ~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~----~~~~~y~~t~~~ 102 (333)
.+|.--.++.|+..|.. +|.|..+||+.+|+ .+..+.+.|+.|...|++......| .....|++++.+
T Consensus 7 kaL~~~~R~~IL~~L~~----g~~s~~ELa~~lgl----S~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt~~~ 78 (232)
T 2qlz_A 7 YILGNKVRRDLLSHLTC----MECYFSLLSSKVSV----SSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISIAK 78 (232)
T ss_dssp HHHTSHHHHHHHHHHTT----TTTCSSSSCTTCCC----CHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEEECCCE
T ss_pred HHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEccch
Confidence 34455567778888886 59999999999999 9999999999999999999832211 002347777665
Q ss_pred c
Q 035738 103 K 103 (333)
Q Consensus 103 ~ 103 (333)
.
T Consensus 79 ~ 79 (232)
T 2qlz_A 79 S 79 (232)
T ss_dssp E
T ss_pred h
Confidence 4
No 440
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=90.13 E-value=0.12 Score=41.10 Aligned_cols=67 Identities=12% Similarity=0.155 Sum_probs=45.8
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccc---cccccccccccc
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARR---LYSLNSVSKYYV 106 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~---~y~~t~~~~~l~ 106 (333)
.++.++..|...| ++++|..+||+.+++ ++..+.++++.|...|+|.+... +.+. .+.+|+.+..+.
T Consensus 47 ~q~~vL~~l~~~~-~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~--~~DrR~~~l~LT~~G~~~~ 116 (168)
T 3u2r_A 47 QQYNTLRLLRSVH-PEGMATLQIADRLIS----RAPDITRLIDRLDDRGLVLRTRK--PENRRVVEVALTDAGLKLL 116 (168)
T ss_dssp HHHHHHHHHHHHT-TSCEEHHHHHHHC-------CTHHHHHHHHHHHTTSEEEEEE--TTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEeecCC--CCCCCeeEeEECHHHHHHH
Confidence 4555677777642 148999999999999 99999999999999999998631 1122 355565555443
No 441
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=90.11 E-value=0.55 Score=29.76 Aligned_cols=43 Identities=19% Similarity=0.172 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccc
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNS 100 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~ 100 (333)
.++|+.|+|+..|. +....+.-|+.|.+.|-+++. ..+|++.|
T Consensus 17 QGMTaGEVAA~f~w----~Le~ar~aLeqLf~~G~LRKR------sSRYrlkp 59 (68)
T 3i71_A 17 QGMTAGEVAAHFGW----PLEKARNALEQLFSAGTLRKR------SSRYRLKP 59 (68)
T ss_dssp TCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE------CCEEEECC
T ss_pred ccccHHHHHHHhCC----cHHHHHHHHHHHHhcchhhhh------ccccccCc
Confidence 37999999999999 889999999999999999986 67888765
No 442
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=89.93 E-value=0.33 Score=39.52 Aligned_cols=58 Identities=17% Similarity=0.246 Sum_probs=46.2
Q ss_pred HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccc-eeeeccCCCcccccccccc
Q 035738 32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSV-VECSLDASGARRLYSLNSV 101 (333)
Q Consensus 32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~-l~~~~~~~~~~~~y~~t~~ 101 (333)
--...|.+.|.+.+ ++.|..|||+++|+ ..+-++|-++.|...|+ +... .+.|.+++.
T Consensus 21 ~R~~~Il~~L~~~~--~~~s~~eLa~~l~v----S~~Ti~rdi~~L~~~G~~I~~~------~~Gy~l~~~ 79 (187)
T 1j5y_A 21 ERLKSIVRILERSK--EPVSGAQLAEELSV----SRQVIVQDIAYLRSLGYNIVAT------PRGYVLAGG 79 (187)
T ss_dssp HHHHHHHHHHHHCS--SCBCHHHHHHHHTS----CHHHHHHHHHHHHHHTCCCEEE------TTEEECCTT
T ss_pred HHHHHHHHHHHHcC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEE------CCEEEECCc
Confidence 44567888887532 47999999999999 99999999999999999 7654 456776643
No 443
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=89.27 E-value=0.14 Score=41.54 Aligned_cols=69 Identities=19% Similarity=0.266 Sum_probs=52.2
Q ss_pred HHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhC-CCCCCCcccHHHHHHHHhcccceeeecc---CCCccccccccccc
Q 035738 27 MAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLT-TKNKDAPMMLDRILRLLASYSVVECSLD---ASGARRLYSLNSVS 102 (333)
Q Consensus 27 ~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g-~~~~~~~~~l~~lL~~L~~~g~l~~~~~---~~~~~~~y~~t~~~ 102 (333)
.+|.--.++.|+..|.+ ++.|+.+|++.++ + +...+.+.|+.|...|+|+...+ .|.....|++++.+
T Consensus 18 ~~La~P~Rl~il~~L~~----~~~~~~~l~~~l~~~----~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~~ 89 (182)
T 4g6q_A 18 DLLHHPLRWRITQLLIG----RSLTTRELAELLPDV----ATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQA 89 (182)
T ss_dssp HHTTSHHHHHHHHHTTT----SCEEHHHHHHHCTTB----CHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTTT
T ss_pred HHhCCHHHHHHHHHHHh----CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEecccc
Confidence 44555678899999987 5999999999996 8 88889999999999999986532 11123457766554
Q ss_pred c
Q 035738 103 K 103 (333)
Q Consensus 103 ~ 103 (333)
.
T Consensus 90 ~ 90 (182)
T 4g6q_A 90 G 90 (182)
T ss_dssp T
T ss_pred c
Confidence 3
No 444
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=89.13 E-value=0.25 Score=47.35 Aligned_cols=41 Identities=15% Similarity=0.007 Sum_probs=33.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHC---CCCeEEEeec-hhHhhhCC
Q 035738 190 NIKQLVDVGGGIGVTLQAITTKY---PYIKGINFDL-PHVIEHVP 230 (333)
Q Consensus 190 ~~~~vlDVGgG~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~ 230 (333)
...+|+|.+||+|.++..+.+.. +..+++|+|+ +.+...|+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~ 265 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLAR 265 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHH
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHH
Confidence 56799999999999999998874 3678999999 77665553
No 445
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=89.07 E-value=0.1 Score=40.59 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
|++|..+||+.+++ ++..+.++++-|...|+|.+.+
T Consensus 50 ~~~t~~eLa~~l~~----~~~tvs~~v~~Le~~Glv~r~~ 85 (147)
T 4b8x_A 50 GELPMSKIGERLMV----HPTSVTNTVDRLVRSGLVAKRP 85 (147)
T ss_dssp GEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCEEEee
Confidence 58999999999999 9999999999999999999874
No 446
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=88.67 E-value=0.28 Score=34.93 Aligned_cols=48 Identities=21% Similarity=0.344 Sum_probs=40.4
Q ss_pred HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
++.|+..|.+.|. .+++..||++++++ +..-+.+.|+.|...|++.+.
T Consensus 22 q~~Vl~~I~~~g~-~gi~qkeLa~~~~l----~~~tvt~iLk~LE~kglIkr~ 69 (91)
T 2dk5_A 22 EKLVYQIIEDAGN-KGIWSRDVRYKSNL----PLTEINKILKNLESKKLIKAV 69 (91)
T ss_dssp HHHHHHHHHHHCT-TCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCC-CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 4557777776421 27999999999999 999999999999999999965
No 447
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=88.47 E-value=0.079 Score=39.08 Aligned_cols=68 Identities=19% Similarity=0.230 Sum_probs=49.1
Q ss_pred HHHHhChhhHhhhcCCCCCCCHHHHHHHh----CCCCCCCcccHHHHHHHHhcccceeeecc--CCCccccccccccccc
Q 035738 31 AVYELGIFEIIDKAGPGAKLSASDIAAQL----TTKNKDAPMMLDRILRLLASYSVVECSLD--ASGARRLYSLNSVSKY 104 (333)
Q Consensus 31 ~a~~lglfd~L~~~~~~g~~t~~ela~~~----g~~~~~~~~~l~~lL~~L~~~g~l~~~~~--~~~~~~~y~~t~~~~~ 104 (333)
-..++-|+..|.+ +|.+.-+|++.+ ++ ++..+.+.|+.|...|+|..... +|.....|++|+.+..
T Consensus 8 g~l~~~IL~~L~~----~~~~gyel~~~l~~~~~i----~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~ 79 (108)
T 3l7w_A 8 LLIEYLILAIVSK----HDSYGYDISQTIKLIASI----KESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEK 79 (108)
T ss_dssp HHHHHHHHHHHHH----SCEEHHHHHHHHTTTCCC----CHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHH
T ss_pred HHHHHHHHHHHHc----CCCcHHHHHHHHHHHhCC----CcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHH
Confidence 3455566777776 488888888875 78 89999999999999999998632 1211234788887765
Q ss_pred cc
Q 035738 105 YV 106 (333)
Q Consensus 105 l~ 106 (333)
.+
T Consensus 80 ~l 81 (108)
T 3l7w_A 80 HL 81 (108)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 448
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=88.41 E-value=0.43 Score=36.76 Aligned_cols=67 Identities=16% Similarity=0.139 Sum_probs=47.8
Q ss_pred HHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCC-CcccHHHHHHHHhcccceeeeccCCCcccccccc
Q 035738 30 QAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKD-APMMLDRILRLLASYSVVECSLDASGARRLYSLN 99 (333)
Q Consensus 30 ~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~-~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t 99 (333)
.+..+.-|++.|.+.+ ++.|++||.+.+.-+.|. +..-+.|.|+.|+..|++.+...++ ...+|...
T Consensus 12 ~T~qR~~Il~~L~~~~--~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~-g~~~Y~~~ 79 (139)
T 3mwm_A 12 ATRQRAAVSAALQEVE--EFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTAE-GESVYRRC 79 (139)
T ss_dssp HHHHHHHHHHHHTTCS--SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECTT-SCEEEECC
T ss_pred cCHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcCC-CceEEEEC
Confidence 3556777888888653 589999999998321111 7788999999999999999874211 23456553
No 449
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=88.04 E-value=0.52 Score=36.83 Aligned_cols=61 Identities=18% Similarity=0.312 Sum_probs=47.7
Q ss_pred HHHHhChhhHhhhcCCCCCCCHHHHHHHh-----CCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccc
Q 035738 31 AVYELGIFEIIDKAGPGAKLSASDIAAQL-----TTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSL 98 (333)
Q Consensus 31 ~a~~lglfd~L~~~~~~g~~t~~ela~~~-----g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~ 98 (333)
+..+.-|++.|...+ ++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+...++ ...+|..
T Consensus 26 T~qR~~IL~~l~~~~--~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~-~~~~Y~~ 91 (150)
T 2xig_A 26 SKQREEVVSVLYRSG--THLSPEEITHSIRQKDKNT----SISSVYRILNFLEKENFISVLETSK-SGRRYEI 91 (150)
T ss_dssp HHHHHHHHHHHHHCS--SCBCHHHHHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEETT-TEEEEEE
T ss_pred CHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCcEEEEEeCC-CceEEEe
Confidence 666777899998753 589999999999 56 8888999999999999999874211 1344654
No 450
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=87.97 E-value=0.35 Score=34.95 Aligned_cols=52 Identities=25% Similarity=0.273 Sum_probs=40.3
Q ss_pred HHHHHHHhChhh-HhhhcCCCCCC-CHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 28 AMQAVYELGIFE-IIDKAGPGAKL-SASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 28 ~l~~a~~lglfd-~L~~~~~~g~~-t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
.++-.++..|.+ .+..+ ..+ |..+||+.+|+ ...-+++-|+.|...|++...
T Consensus 15 ~l~~~i~~~I~~~~l~~g---~~lps~~eLa~~~~v----Sr~tvr~al~~L~~~Gli~~~ 68 (102)
T 1v4r_A 15 DVATHFRTLIKSGELAPG---DTLPSVADIRAQFGV----AAKTVSRALAVLKSEGLVSSR 68 (102)
T ss_dssp HHHHHHHHHTTTTSCCTT---SBCCCHHHHHHHSSS----CTTHHHHHTTTTTTSSCCEEE
T ss_pred HHHHHHHHHHHhCCCCCc---CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 444445555555 33332 355 99999999999 999999999999999999976
No 451
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=87.92 E-value=0.21 Score=37.34 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=39.0
Q ss_pred HhChhhHhhhcCCCCCCCHHHHHHHhC----CCCCCCcccHHHHHHHHhcccceeee
Q 035738 34 ELGIFEIIDKAGPGAKLSASDIAAQLT----TKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~ela~~~g----~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
+..++..|... ++.|..+||+.++ + .+..+.++|+.|...|+|.+.
T Consensus 12 ~~~vL~~l~~~---~~~t~~ela~~l~~~~~~----s~~tv~~~l~~L~~~Glv~r~ 61 (123)
T 1okr_A 12 EWEVMNIIWMK---KYASANNIIEEIQMQKDW----SPKTIRTLITRLYKKGFIDRK 61 (123)
T ss_dssp HHHHHHHHHHH---SSEEHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHhC---CCcCHHHHHHHHhccCCC----cHhhHHHHHHHHHHCCCeEEE
Confidence 34556666654 4899999999999 6 689999999999999999987
No 452
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=87.53 E-value=0.6 Score=44.58 Aligned_cols=52 Identities=12% Similarity=-0.050 Sum_probs=35.5
Q ss_pred HHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHC-------------CCCeEEEeec-hhHhhhCC
Q 035738 178 MSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKY-------------PYIKGINFDL-PHVIEHVP 230 (333)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~ 230 (333)
...+++.+. .....+|+|-+||+|.++....+.. ....+.|+|+ +.+...|+
T Consensus 206 v~lmv~l~~-p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~ 271 (530)
T 3ufb_A 206 VRFMVEVMD-PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQ 271 (530)
T ss_dssp HHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHH
T ss_pred HHHHHHhhc-cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHH
Confidence 344444444 5566799999999999998776532 2356899998 66655544
No 453
>1vpt_A VP39; RNA CAP, poly(A) polymerase, methyltransferase; HET: SAM; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1vp3_A*
Probab=87.38 E-value=1.3 Score=38.89 Aligned_cols=79 Identities=14% Similarity=0.153 Sum_probs=56.5
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCC----CeEEEeechhHhhhCCCCCCeEEEccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 035738 191 IKQLVDVGGGIGVTLQAITTKYPY----IKGINFDLPHVIEHVPPHPCMWILHDWNDEHCLKLLKNCYKSIPEDGKVIAV 266 (333)
Q Consensus 191 ~~~vlDVGgG~G~~~~~l~~~~p~----~~~~~~D~~~~~~~a~~~~gv~vLh~~~~~~~~~lL~~~~~~L~pgG~l~i~ 266 (333)
+..||=+|++.|.+...|.+.||+ ++++.+|-.......+..+++.+...+-++++ ++..+..+.....|+|.
T Consensus 76 g~~VVYaGsAPG~HI~fL~~lF~~l~~~lkwvLiDp~~f~~~Le~~~ni~li~~ffde~~---i~~l~~~~~~~~vLfIS 152 (348)
T 1vpt_A 76 GATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDGRHHDPILNGLRDVTLVTRFVDEEY---LRSIKKQLHPSKIILIS 152 (348)
T ss_dssp TCEEEEESCSSCHHHHHHHHHHHHTTCCCEEEEEESSCCCGGGTTCTTEEEEECCCCHHH---HHHHHHHHTTSCEEEEE
T ss_pred CCeEEEeCcCCcchHHHHHHHhhhcCCceEEEEECCCchhhhhcCCCcEEeehhhcCHHH---HHHHHHHhcCCCEEEEE
Confidence 359999999999999999988775 89999998444455555567766666666653 44444555566888888
Q ss_pred eeecCC
Q 035738 267 ELMLPE 272 (333)
Q Consensus 267 e~~~~~ 272 (333)
|....+
T Consensus 153 DIRS~~ 158 (348)
T 1vpt_A 153 DVASAA 158 (348)
T ss_dssp CCCC--
T ss_pred ecccCC
Confidence 875544
No 454
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=87.30 E-value=0.62 Score=39.93 Aligned_cols=50 Identities=14% Similarity=0.121 Sum_probs=37.6
Q ss_pred hHHHHHhhccCCCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHhhhCC
Q 035738 177 VMSNILESYKGFDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVIEHVP 230 (333)
Q Consensus 177 ~~~~~~~~~~~~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~ 230 (333)
....++..+ ......|||..||+|.++.+..+.. .+++++|+ |..++.++
T Consensus 201 l~~~~i~~~--~~~~~~vlD~f~GsGtt~~~a~~~g--r~~ig~e~~~~~~~~~~ 251 (260)
T 1g60_A 201 LIERIIRAS--SNPNDLVLDCFMGSGTTAIVAKKLG--RNFIGCDMNAEYVNQAN 251 (260)
T ss_dssp HHHHHHHHH--CCTTCEEEESSCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHh--CCCCCEEEECCCCCCHHHHHHHHcC--CeEEEEeCCHHHHHHHH
Confidence 344555543 3466799999999999999988764 57999999 77776654
No 455
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=86.71 E-value=0.43 Score=35.59 Aligned_cols=72 Identities=18% Similarity=0.176 Sum_probs=52.9
Q ss_pred HHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHh------CCCCCCCcccHHHHHHHHhcccceeeecc---CCCcccccc
Q 035738 27 MAMQAVYELGIFEIIDKAGPGAKLSASDIAAQL------TTKNKDAPMMLDRILRLLASYSVVECSLD---ASGARRLYS 97 (333)
Q Consensus 27 ~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~------g~~~~~~~~~l~~lL~~L~~~g~l~~~~~---~~~~~~~y~ 97 (333)
+.++-..++=|+..|.+ +|.+.-+|++.+ ++ ++..+...|+-|...|+++.... +|+....|+
T Consensus 8 ~l~~g~l~~~IL~lL~~----~p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~ 79 (116)
T 3hhh_A 8 ELLKGILEGLVLAIIQR----KETYGYEITKILNDQGFTEI----VEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYR 79 (116)
T ss_dssp HHHTTHHHHHHHHHHHH----SCBCHHHHHHHHHTTSCSSC----CHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEE
T ss_pred HHHhhhHHHHHHHHHhc----CCCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEE
Confidence 44444455667777777 489999999998 57 89999999999999999997631 222334588
Q ss_pred ccccccccc
Q 035738 98 LNSVSKYYV 106 (333)
Q Consensus 98 ~t~~~~~l~ 106 (333)
+|+.+...+
T Consensus 80 lT~~G~~~l 88 (116)
T 3hhh_A 80 LTSSGEAEL 88 (116)
T ss_dssp ECHHHHHHH
T ss_pred ECHHHHHHH
Confidence 888886544
No 456
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=86.54 E-value=0.78 Score=30.33 Aligned_cols=47 Identities=19% Similarity=0.224 Sum_probs=39.6
Q ss_pred HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
+-.|++.|..+ ||.++-.||+++|++ ...-+.+-|..|...|+|..+
T Consensus 12 ee~I~~fL~~~---Gp~~AL~IAK~LGlk---tAK~VNp~LY~m~~~~lL~~D 58 (72)
T 3eyi_A 12 EEDIYRFLKDN---GPQRALVIAQALGMR---TAKDVNRDLYRMKSRHLLDMD 58 (72)
T ss_dssp HHHHHHHHHHH---CSEEHHHHHHHTTCC---SGGGTHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHc---CCchHHHHHHHhCcc---hhhhcCHHHHHHHHccCcCCC
Confidence 45688899987 599999999999993 333489999999999999775
No 457
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=86.36 E-value=0.38 Score=34.94 Aligned_cols=35 Identities=31% Similarity=0.335 Sum_probs=32.5
Q ss_pred CCC-CHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 48 AKL-SASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 48 g~~-t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
+.+ |..+||+.+|+ ...-+++-|+.|...|++...
T Consensus 41 ~~lps~~eLa~~lgV----Sr~tVr~al~~L~~~GlI~~~ 76 (102)
T 2b0l_A 41 EGLLVASKIADRVGI----TRSVIVNALRKLESAGVIESR 76 (102)
T ss_dssp EEEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 355 99999999999 999999999999999999986
No 458
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=86.31 E-value=0.3 Score=38.03 Aligned_cols=70 Identities=10% Similarity=0.152 Sum_probs=50.9
Q ss_pred HHHHHHhChhhHhhhcCCCCCCCHHHHHHHh--------CCCCCCCcccHHHHHHHHhcccceeeecc---CCCcccccc
Q 035738 29 MQAVYELGIFEIIDKAGPGAKLSASDIAAQL--------TTKNKDAPMMLDRILRLLASYSVVECSLD---ASGARRLYS 97 (333)
Q Consensus 29 l~~a~~lglfd~L~~~~~~g~~t~~ela~~~--------g~~~~~~~~~l~~lL~~L~~~g~l~~~~~---~~~~~~~y~ 97 (333)
+.--.++-|+..|.+ +|.+.-||++.+ ++ ++..+.+.|+-|...|+|..... +++....|+
T Consensus 38 ~~g~~~~~IL~~L~~----~~~~gyeI~~~l~~~~~~~~~i----s~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~ 109 (145)
T 1xma_A 38 IRGYVDTIILSLLIE----GDSYGYEISKNIRIKTDELYVI----KETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYR 109 (145)
T ss_dssp GGGTHHHHHHHHHHH----CCEEHHHHHHHHHHHHTTSCCC----CHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEE
T ss_pred hcCcHHHHHHHHHHh----CCCCHHHHHHHHHHhhCCccCc----ChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEE
Confidence 334456667777776 489999998888 57 89999999999999999988632 122234588
Q ss_pred ccccccccc
Q 035738 98 LNSVSKYYV 106 (333)
Q Consensus 98 ~t~~~~~l~ 106 (333)
+|+.+..++
T Consensus 110 LT~~G~~~l 118 (145)
T 1xma_A 110 ITPEGIKYY 118 (145)
T ss_dssp ECHHHHHHH
T ss_pred ECHHHHHHH
Confidence 888776443
No 459
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=85.81 E-value=0.28 Score=37.71 Aligned_cols=34 Identities=6% Similarity=0.035 Sum_probs=32.4
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 49 KLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 49 ~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
..|.++||+++|+ ++.-+.+.|+.|...|++...
T Consensus 51 ~ps~~~LA~~~~~----s~~~v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 51 FPTPNQLQEGMSI----SVEECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp SCCHHHHHTTSSS----CHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 5799999999999 999999999999999999985
No 460
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=85.67 E-value=0.36 Score=40.63 Aligned_cols=53 Identities=15% Similarity=0.161 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccccc
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYV 106 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~ 106 (333)
++.|..++|+++++ ++..+.+.++.|...|++.+... +....+.+|+.+..+.
T Consensus 26 ~~~s~s~aA~~L~i----sq~avSr~I~~LE~~~L~~R~~~--~R~~~v~LT~~G~~l~ 78 (230)
T 3cta_A 26 AYLTSSKLADMLGI----SQQSASRIIIDLEKNGYITRTVT--KRGQILNITEKGLDVL 78 (230)
T ss_dssp EECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEEE--TTEEEEEECHHHHHHH
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEEEc--CCeEEEEECHHHHHHH
Confidence 36899999999999 99999999999999999998621 0134566776665544
No 461
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=85.51 E-value=0.36 Score=43.65 Aligned_cols=39 Identities=18% Similarity=0.066 Sum_probs=32.2
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hhHh
Q 035738 188 FDNIKQLVDVGGGIGVTLQAITTKYPYIKGINFDL-PHVI 226 (333)
Q Consensus 188 ~~~~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~ 226 (333)
..++.+|||+-+|.|.=+..++...++-.++..|+ +.-+
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~ 185 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRI 185 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHH
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHH
Confidence 66788999999999999999988777667888898 4443
No 462
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=85.43 E-value=0.78 Score=33.19 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=34.7
Q ss_pred HHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhc
Q 035738 31 AVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLAS 79 (333)
Q Consensus 31 ~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~ 79 (333)
.+.++||+..|.. |+.|..|||+.+|+ ....+.|.-++|..
T Consensus 44 l~~R~~l~~~L~~----ge~TQREIA~~lGi----S~stISRi~r~L~~ 84 (101)
T 1jhg_A 44 LGTRVRIIEELLR----GEMSQRELKNELGA----GIATITRGSNSLKA 84 (101)
T ss_dssp HHHHHHHHHHHHH----CCSCHHHHHHHHCC----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc----CCcCHHHHHHHHCC----ChhhhhHHHHHHHH
Confidence 4566899999988 47999999999999 89888888777643
No 463
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=85.38 E-value=0.54 Score=36.03 Aligned_cols=48 Identities=15% Similarity=0.111 Sum_probs=40.3
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhC----CCCCCCcccHHHHHHHHhcccceeee
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLT----TKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g----~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
.+..|+..|.+.. ++.|..||++.++ + ++.-+.++|+-|...|+|.+.
T Consensus 10 ~e~~vL~~L~~~~--~~~t~~el~~~l~~~~~~----~~~Tvt~~l~rLe~kGlv~r~ 61 (138)
T 2g9w_A 10 LERAVMDHLWSRT--EPQTVRQVHEALSARRDL----AYTTVMAVLQRLAKKNLVLQI 61 (138)
T ss_dssp HHHHHHHHHHTCS--SCEEHHHHHHHHTTTCCC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcC--CCCCHHHHHHHHhccCCC----CHHHHHHHHHHHHHCCCEEEE
Confidence 4556677777621 4899999999998 6 788999999999999999987
No 464
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=85.16 E-value=0.44 Score=35.61 Aligned_cols=51 Identities=14% Similarity=0.211 Sum_probs=40.7
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
.+..+...|.+. ++.|..|||+.++.+.+-++.-+.++|+-|...|+|.+.
T Consensus 11 ~q~~vL~~L~~~---~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~ 61 (126)
T 1sd4_A 11 AEWDVMNIIWDK---KSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRY 61 (126)
T ss_dssp HHHHHHHHHHHS---SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhc---CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEE
Confidence 455667777775 489999999999741111688899999999999999987
No 465
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=84.74 E-value=0.89 Score=34.76 Aligned_cols=62 Identities=18% Similarity=0.258 Sum_probs=45.6
Q ss_pred HHHHhChhhHhhhcCCCCCCCHHHHHHHh-----CCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccc
Q 035738 31 AVYELGIFEIIDKAGPGAKLSASDIAAQL-----TTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSL 98 (333)
Q Consensus 31 ~a~~lglfd~L~~~~~~g~~t~~ela~~~-----g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~ 98 (333)
+..+.-|++.|.+.+ .++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+...++ ...+|.+
T Consensus 17 T~qR~~Il~~L~~~~-~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~-~~~~Y~~ 83 (136)
T 1mzb_A 17 TLPRVKILQMLDSAE-QRHMSAEDVYKALMEAGEDV----GLATVYRVLTQFEAAGLVVRHNFDG-GHAVFEL 83 (136)
T ss_dssp CHHHHHHHHHHHCC--CCSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEECSSS-SSCEEEE
T ss_pred CHHHHHHHHHHHhCC-CCCCCHHHHHHHHHhhCCCC----CHHHHHHHHHHHHHCCcEEEEEeCC-CceEEEe
Confidence 344566888887531 0489999999999 56 7888999999999999999874211 1345654
No 466
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=83.97 E-value=0.41 Score=40.27 Aligned_cols=47 Identities=11% Similarity=0.121 Sum_probs=39.0
Q ss_pred CHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccccc
Q 035738 51 SASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYV 106 (333)
Q Consensus 51 t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~ 106 (333)
+..+||+.+++ ++..+.+.|+.|...|++.+.+ +..+.+|+.+..+.
T Consensus 26 ~~~~La~~l~v----s~~tvs~~l~~Le~~GlV~r~~-----~~~v~LT~~G~~~~ 72 (230)
T 1fx7_A 26 LRARIAERLDQ----SGPTVSQTVSRMERDGLLRVAG-----DRHLELTEKGRALA 72 (230)
T ss_dssp CHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECT-----TSCEEECHHHHHHH
T ss_pred cHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC-----CccEEECHHHHHHH
Confidence 44999999999 9999999999999999999972 45677777765443
No 467
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=83.43 E-value=0.63 Score=34.86 Aligned_cols=46 Identities=13% Similarity=0.055 Sum_probs=37.8
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
....|.+.+.. .|.++.+||+.+|+ ++..++.+|+.|+..|.+...
T Consensus 8 l~~~i~~~~~~----~p~~~~~la~~~~~----~~~~~~~~l~~l~~~G~l~~i 53 (121)
T 2pjp_A 8 IWQKAEPLFGD----EPWWVRDLAKETGT----DEQAMRLTLRQAAQQGIITAI 53 (121)
T ss_dssp HHHHHGGGCSS----SCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHh----CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 34445555543 27799999999999 999999999999999998886
No 468
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=83.41 E-value=0.67 Score=42.11 Aligned_cols=70 Identities=14% Similarity=0.184 Sum_probs=49.0
Q ss_pred HHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeecc----CCCcccccccccc
Q 035738 26 PMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLD----ASGARRLYSLNSV 101 (333)
Q Consensus 26 ~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~----~~~~~~~y~~t~~ 101 (333)
+++++...+..|++.|. . +++|..|||+.+|+ .+.-+.++++.|...|++.+... .|-....|.+++.
T Consensus 14 ~~~~~~~~~~~il~~l~-~---~~~sr~~la~~~gl----s~~tv~~~v~~L~~~gli~~~~~~~~~~GR~~~~l~~~~~ 85 (380)
T 2hoe_A 14 PKSVRAENISRILKRIM-K---SPVSRVELAEELGL----TKTTVGEIAKIFLEKGIVVEEKDSPKGVGRPTKSLKISPN 85 (380)
T ss_dssp --------CCCSHHHHH-H---SCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEEECCC----CCCEEEEECGG
T ss_pred chhHHHHHHHHHHHHHH-c---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeecCCCCCCCCCceEEEEccC
Confidence 55677777888999999 7 59999999999999 99999999999999999998632 1112333666665
Q ss_pred cc
Q 035738 102 SK 103 (333)
Q Consensus 102 ~~ 103 (333)
..
T Consensus 86 ~~ 87 (380)
T 2hoe_A 86 CA 87 (380)
T ss_dssp GC
T ss_pred CC
Confidence 43
No 469
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=83.35 E-value=0.5 Score=40.38 Aligned_cols=50 Identities=16% Similarity=0.081 Sum_probs=41.1
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
.+..++..|...++ ++.|..|||+.+++ ++..+.++++-|...|+|.+..
T Consensus 159 ~q~~vL~~L~~~~~-~~~t~~eLa~~l~i----~~~tvt~~v~rLe~~GlV~R~~ 208 (250)
T 1p4x_A 159 VEFTILAIITSQNK-NIVLLKDLIETIHH----KYPQTVRALNNLKKQGYLIKER 208 (250)
T ss_dssp HHHHHHHHHHTTTT-CCEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEEEE
T ss_pred HHHHHHHHHHhCCC-CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeeC
Confidence 34456677766431 25999999999999 9999999999999999999974
No 470
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=83.13 E-value=0.92 Score=33.46 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=32.3
Q ss_pred CCC-CHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 48 AKL-SASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 48 g~~-t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
..+ |..+||+.+|+ +..-+++-|+.|...|++...
T Consensus 31 ~~lPs~~~La~~~~v----Sr~tvr~al~~L~~~Gli~~~ 66 (113)
T 3tqn_A 31 EMIPSIRKISTEYQI----NPLTVSKAYQSLLDDNVIEKR 66 (113)
T ss_dssp CEECCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 355 89999999999 999999999999999999986
No 471
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=83.10 E-value=0.61 Score=38.28 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=40.2
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccc
Q 035738 49 KLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKY 104 (333)
Q Consensus 49 ~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~ 104 (333)
|.+..+||+.+|+ .++-++..++-|...|+++.. .+...+|+.+..
T Consensus 30 ~V~~~~LA~~Lgv----S~~SV~~~lkkL~e~GLV~~~------~~Gv~LTe~G~~ 75 (200)
T 2p8t_A 30 PLGRKQISERLEL----GEGSVRTLLRKLSHLDIIRSK------QRGHFLTLKGKE 75 (200)
T ss_dssp CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC--------CEEECHHHHH
T ss_pred CccHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe------CCCeEECHHHHH
Confidence 8999999999999 999999999999999999986 367788887753
No 472
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=83.04 E-value=1.7 Score=39.87 Aligned_cols=41 Identities=15% Similarity=0.228 Sum_probs=33.6
Q ss_pred CCCCeEEEEcCCccHHHHHHH-HHCCC-CeEEEeec-hhHhhhC
Q 035738 189 DNIKQLVDVGGGIGVTLQAIT-TKYPY-IKGINFDL-PHVIEHV 229 (333)
Q Consensus 189 ~~~~~vlDVGgG~G~~~~~l~-~~~p~-~~~~~~D~-~~~~~~a 229 (333)
++...++|||++.|.++..++ +..++ .+++.++. |...+..
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L 268 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTL 268 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHH
Confidence 567899999999999999988 56765 78999998 7665543
No 473
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=82.88 E-value=0.98 Score=36.32 Aligned_cols=64 Identities=17% Similarity=0.351 Sum_probs=48.0
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHh--------CCCCCCCcccHHHHHHHHhcccceeeecc---CCCcccccccccc
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQL--------TTKNKDAPMMLDRILRLLASYSVVECSLD---ASGARRLYSLNSV 101 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~--------g~~~~~~~~~l~~lL~~L~~~g~l~~~~~---~~~~~~~y~~t~~ 101 (333)
+++-|+..|.+ +|.+.-||++.+ ++ ++..+.+.|+-|...|+|+.... +++....|++|+.
T Consensus 3 l~~~iL~lL~~----~~~~gyel~~~l~~~~~~~~~~----s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~ 74 (179)
T 1yg2_A 3 LPHVILTVLST----RDATGYDITKEFSASIGYFWKA----SHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQA 74 (179)
T ss_dssp HHHHHHHHHHH----CCBCHHHHHHHHTTGGGGTCCC----CHHHHHHHHHHHHHTTSEEECCC---------CEEECHH
T ss_pred hHHHHHHHHhc----CCCCHHHHHHHHHHHhCCccCC----CcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChH
Confidence 34556777876 499999999999 57 88999999999999999997532 1223456999998
Q ss_pred ccc
Q 035738 102 SKY 104 (333)
Q Consensus 102 ~~~ 104 (333)
+..
T Consensus 75 G~~ 77 (179)
T 1yg2_A 75 GRS 77 (179)
T ss_dssp HHH
T ss_pred HHH
Confidence 863
No 474
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=82.55 E-value=1.3 Score=33.57 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=32.6
Q ss_pred CCC-CHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 48 AKL-SASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 48 g~~-t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
..+ |..+||+.+|+ +..-+++-|+.|...|++...
T Consensus 26 ~~LPse~~La~~~gv----Sr~tVr~Al~~L~~~Gli~~~ 61 (129)
T 2ek5_A 26 QRVPSTNELAAFHRI----NPATARNGLTLLVEAGILYKK 61 (129)
T ss_dssp SCBCCHHHHHHHTTC----CHHHHHHHHHHHHTTTSEEEE
T ss_pred CcCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEe
Confidence 466 89999999999 999999999999999999987
No 475
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=82.33 E-value=0.26 Score=44.32 Aligned_cols=63 Identities=11% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccccccC
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPN 108 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~~~ 108 (333)
-+..++..|... +++|..|||+.+|+ ++.-++|.|+.|...|++++. .....+|+.+..+...
T Consensus 21 r~~~iL~~l~~~---~~~t~~eLa~~l~v----s~~Tv~r~l~~Le~~Glv~~~------~~gi~LT~~G~~~~~~ 83 (345)
T 2o0m_A 21 ERFQILRNIYWM---QPIGRRSLSETMGI----TERVLRTETDVLKQLNLIEPS------KSGMTLTERGLEVYQG 83 (345)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE------ecceEEcHHHHHHHHH
Confidence 345677777765 48999999999999 999999999999999999854 3456778877766543
No 476
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=82.25 E-value=1 Score=39.94 Aligned_cols=57 Identities=14% Similarity=0.253 Sum_probs=45.0
Q ss_pred HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccccc
Q 035738 34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSV 101 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~ 101 (333)
+..|++.|.+. ++.|.++||+++|+ .+..++|-++.|...|++.+.. .+..|++.+.
T Consensus 7 ~~~Il~~L~~~---~~~s~~eLa~~l~v----S~~ti~r~l~~L~~~G~~i~~~----~g~GY~l~~~ 63 (321)
T 1bia_A 7 PLKLIALLANG---EFHSGEQLGETLGM----SRAAINKHIQTLRDWGVDVFTV----PGKGYSLPEP 63 (321)
T ss_dssp HHHHHHHHTTS---SCBCHHHHHHHHTS----CHHHHHHHHHHHHHTTCCCEEE----TTTEEECSSC
T ss_pred HHHHHHHHHcC---CCcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCcEEEe----cCCCcEEeec
Confidence 34467777664 58999999999999 9999999999999999986542 2446777543
No 477
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=82.16 E-value=0.98 Score=34.84 Aligned_cols=44 Identities=14% Similarity=0.088 Sum_probs=39.6
Q ss_pred hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
-.+.+.|.+ |+.|..+||+++|+ +....+-.|..|...|++.+.
T Consensus 14 ~~ILE~Lk~----G~~~t~~Iak~LGl----Shg~aq~~Ly~LeREG~V~~V 57 (165)
T 2vxz_A 14 RDILALLAD----GCKTTSLIQQRLGL----SHGRAKALIYVLEKEGRVTRV 57 (165)
T ss_dssp HHHHHHHTT----CCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHHh----CCccHHHHHHHhCC----cHHHHHHHHHHHHhcCceEEE
Confidence 346777883 69999999999999 999999999999999999987
No 478
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=80.77 E-value=1.1 Score=30.50 Aligned_cols=36 Identities=17% Similarity=0.159 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 48 AKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 48 g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
+.+++.++|+.+++. ..+.+..++++|.++|++++.
T Consensus 29 ~~i~l~~aa~~L~v~---~kRRiYDI~NVLe~igli~K~ 64 (76)
T 1cf7_A 29 GVLDLKLAADTLAVR---QKRRIYDITNVLEGIGLIEKK 64 (76)
T ss_dssp TEEEHHHHHHHTTTC---CTHHHHHHHHHHHHHTSEEEE
T ss_pred CcCcHHHHHHHhCCc---cceehhhHHHHHhHhcceeec
Confidence 689999999999982 578899999999999999986
No 479
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=80.24 E-value=0.68 Score=34.37 Aligned_cols=66 Identities=15% Similarity=0.220 Sum_probs=48.9
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhC------CCCCCCcccHHHHHHHHhcccceeeecc---CCCcccccccccccc
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLT------TKNKDAPMMLDRILRLLASYSVVECSLD---ASGARRLYSLNSVSK 103 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g------~~~~~~~~~l~~lL~~L~~~g~l~~~~~---~~~~~~~y~~t~~~~ 103 (333)
.++-|+..|.+ +|.+.-+|++.+. + ++..+...|+-|...|+|..... +|+....|++|+.+.
T Consensus 10 l~~~IL~~L~~----~~~~Gyei~~~l~~~~~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~ 81 (115)
T 4esb_A 10 LEGCILYIISQ----EEVYGYELSTKLNKHGFTFV----SEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGL 81 (115)
T ss_dssp HHHHHHHHHHH----SCEEHHHHHHHHHHTTCTTC----CHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHH
T ss_pred HHHHHHHHHHc----CCCCHHHHHHHHHHcCCCCC----CcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHH
Confidence 34446667776 4899999999985 7 89999999999999999997531 222334588888876
Q ss_pred ccc
Q 035738 104 YYV 106 (333)
Q Consensus 104 ~l~ 106 (333)
..+
T Consensus 82 ~~l 84 (115)
T 4esb_A 82 EQL 84 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 480
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=79.88 E-value=1.4 Score=33.18 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=32.7
Q ss_pred CCC-CHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 48 AKL-SASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 48 g~~-t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
..+ |..+||+.+|+ +..-+++-|+.|...|++...
T Consensus 33 ~~lPse~~La~~~~v----Sr~tvr~Al~~L~~~Gli~~~ 68 (126)
T 3by6_A 33 DQLPSVRETALQEKI----NPNTVAKAYKELEAQKVIRTI 68 (126)
T ss_dssp CEECCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 466 99999999999 999999999999999999987
No 481
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=79.15 E-value=1.8 Score=38.45 Aligned_cols=60 Identities=13% Similarity=0.156 Sum_probs=45.8
Q ss_pred HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccc
Q 035738 34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVS 102 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~ 102 (333)
+..|++.|.+.. +.+.|.++||+++|+ +...+.+.++.|...|+.-+.. .+..|++.+..
T Consensus 5 ~~~iL~~L~~~~-g~~~Sg~eLa~~lgv----Sr~aV~k~i~~L~~~G~~i~~~----~~~GY~L~~~~ 64 (323)
T 3rkx_A 5 SQDVLQLLYKNK-PNYISGQSIAESLNI----SRTAVKKVIDQLKLEGCKIDSV----NHKGHLLQQLP 64 (323)
T ss_dssp HHHHHHHHHHHT-TSCBCHHHHHHHHTS----CHHHHHHHHHHHHHTTCEEEEE----TTTEEEEEECC
T ss_pred HHHHHHHHHhCC-CCccCHHHHHHHHCC----CHHHHHHHHHHHHhcCCeEEEe----CCCeEEEecCc
Confidence 345777885321 138999999999999 9999999999999999965531 35678887643
No 482
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=78.65 E-value=1.7 Score=39.80 Aligned_cols=51 Identities=16% Similarity=0.279 Sum_probs=44.1
Q ss_pred HHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 29 MQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 29 l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
++..-+..|++.|.+. +++|..|||+.+|+ .+.-+.++++.|...|++.+.
T Consensus 13 ~r~~n~~~il~~l~~~---~~~sr~~la~~~~l----s~~tv~~~v~~L~~~g~i~~~ 63 (406)
T 1z6r_A 13 IKQTNAGAVYRLIDQL---GPVSRIDLSRLAQL----APASITKIVHEMLEAHLVQEL 63 (406)
T ss_dssp HHHHHHHHHHHHHHSS---CSCCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEC
T ss_pred HHHhHHHHHHHHHHHc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEee
Confidence 3444555688899886 59999999999999 999999999999999999985
No 483
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=78.46 E-value=1.1 Score=37.52 Aligned_cols=49 Identities=10% Similarity=0.135 Sum_probs=40.5
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCccccccccccccccc
Q 035738 49 KLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYV 106 (333)
Q Consensus 49 ~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t~~~~~l~ 106 (333)
+.+..+||+.+++ ++..+.+.++.|...|++.+. ....+.+|+.+..+.
T Consensus 24 ~~~~~~la~~l~v----s~~tvs~~l~~Le~~GlV~r~-----~~~~v~LT~~G~~~~ 72 (226)
T 2qq9_A 24 TPLRARIAERLEQ----SGPTVSQTVARMERDGLVVVA-----SDRSLQMTPTGRTLA 72 (226)
T ss_dssp CCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC-----TTSBEEECHHHHHHH
T ss_pred CccHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe-----CCCCeEECHHHHHHH
Confidence 3456999999999 999999999999999999986 245678887776544
No 484
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=78.36 E-value=1.9 Score=39.80 Aligned_cols=51 Identities=18% Similarity=0.355 Sum_probs=45.3
Q ss_pred HHHHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 29 MQAVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 29 l~~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
++..-+..|++.|... +++|..|||+.+|+ .+.-+.++++.|...|++.+.
T Consensus 36 ~r~~n~~~il~~l~~~---~~~sr~ela~~~gl----s~~tv~~~v~~L~~~gli~~~ 86 (429)
T 1z05_A 36 IKQINAGRVYKLIDQK---GPISRIDLSKESEL----APASITKITRELIDAHLIHET 86 (429)
T ss_dssp HHHHHHHHHHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHHc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec
Confidence 4555666789999887 59999999999999 999999999999999999986
No 485
>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}
Probab=78.18 E-value=11 Score=29.40 Aligned_cols=32 Identities=16% Similarity=0.131 Sum_probs=29.6
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec
Q 035738 191 IKQLVDVGGGIGVTLQAITTKYPYIKGINFDL 222 (333)
Q Consensus 191 ~~~vlDVGgG~G~~~~~l~~~~p~~~~~~~D~ 222 (333)
..-|+|+|=|+|.+=-.+.+.+|+-++.++|.
T Consensus 41 ~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR 72 (174)
T 3iht_A 41 SGPVYELGLGNGRTYHHLRQHVQGREIYVFER 72 (174)
T ss_dssp CSCEEEECCTTCHHHHHHHHHCCSSCEEEEES
T ss_pred CCceEEecCCCChhHHHHHHhCCCCcEEEEEe
Confidence 34599999999999999999999999999996
No 486
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=77.96 E-value=1.8 Score=36.40 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=34.1
Q ss_pred CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 47 GAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 47 ~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
+..++..+||+.+|+ +..-+++-|+.|...|+|+..
T Consensus 47 G~~L~e~~La~~lgV----Sr~~VReAL~~L~~~Glv~~~ 82 (237)
T 3c7j_A 47 GTALRQQELATLFGV----SRMPVREALRQLEAQSLLRVE 82 (237)
T ss_dssp TCBCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred cCeeCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 368999999999999 999999999999999999987
No 487
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=77.59 E-value=1.5 Score=42.30 Aligned_cols=61 Identities=7% Similarity=0.048 Sum_probs=50.9
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhc-----ccceeeeccCCCccccccccccccccc
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLAS-----YSVVECSLDASGARRLYSLNSVSKYYV 106 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~-----~g~l~~~~~~~~~~~~y~~t~~~~~l~ 106 (333)
.+.-+++.|.+. +.+|..+|++.+|+ ++..+++.|+.|.. .|+++.. ++.|.+++.....+
T Consensus 431 ~~~~iL~~l~~~---~~it~~~la~~l~~----s~~~~~~~L~~L~~~~~~~~glie~~------g~~y~L~~~~~~~~ 496 (583)
T 3lmm_A 431 RIAIVLYLLFQR---PFITIDVVARGLQS----GKEAARNALEAARQTTVAGAPLIIAH------DGVWLLGNACREIL 496 (583)
T ss_dssp HHHHHHHHHHHS---SSBCHHHHHHHHTS----CHHHHHHHHHHHHTCEETTEESEEEE------TTEEEECHHHHHHH
T ss_pred hHHHHHHHHHHC---CCcCHHHHHHHhCc----CHHHHHHHHHHHHhhhccccceEEEe------CCEEEECHHHHHHh
Confidence 445678888886 48999999999999 99999999999999 8999986 57899988654433
No 488
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.36 E-value=1.8 Score=30.83 Aligned_cols=50 Identities=20% Similarity=0.305 Sum_probs=43.2
Q ss_pred HHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 32 VYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 32 a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
..+.-|++.+.+.|. .+++..||..++++ +..-+.+.|..|...+++.+.
T Consensus 37 ~~E~lVy~~I~~aGn-~GIw~kdL~~~tnL----~~~~vtkiLK~LE~k~lIK~V 86 (95)
T 2yu3_A 37 NQEKLVYQIIEDAGN-KGIWSRDVRYKSNL----PLTEINKILKNLESKKLIKAV 86 (95)
T ss_dssp HHHHHHHHHHHHHTT-SCEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHhCC-CCCCHHHHHHHhCC----CHHHHHHHHHHHHhCCCEEEe
Confidence 356667888887652 46999999999999 999999999999999999987
No 489
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=77.11 E-value=3.4 Score=34.70 Aligned_cols=44 Identities=7% Similarity=0.120 Sum_probs=38.0
Q ss_pred hChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 35 LGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 35 lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
.-|.-.|.. |+.|.++||+.+|+ +++-+...|.-|...|++++.
T Consensus 168 ~~l~~~l~~----~~~t~~~la~~~~l----~~~~V~~~l~~L~~~~~v~~~ 211 (232)
T 2qlz_A 168 AILHYLLLN----GRATVEELSDRLNL----KEREVREKISEMARFVPVKII 211 (232)
T ss_dssp HHHHHHHHS----SEEEHHHHHHHHTC----CHHHHHHHHHHHTTTSCEEEE
T ss_pred HHHHHHHhc----CCCCHHHHHHHhCc----CHHHHHHHHHHHHhcCCeEEe
Confidence 445555665 59999999999999 999999999999999999865
No 490
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=76.96 E-value=2.5 Score=31.71 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=32.3
Q ss_pred CCC-CHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeee
Q 035738 48 AKL-SASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECS 86 (333)
Q Consensus 48 g~~-t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~ 86 (333)
..+ |..+||+.+|+ +..-+++-+..|...|++...
T Consensus 35 ~~Lps~~~La~~~~v----Sr~tvr~Al~~L~~~G~i~~~ 70 (125)
T 3neu_A 35 DKLPSVREMGVKLAV----NPNTVSRAYQELERAGYIYAK 70 (125)
T ss_dssp CBCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCeEEEe
Confidence 456 69999999999 999999999999999999986
No 491
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=76.80 E-value=12 Score=33.27 Aligned_cols=77 Identities=12% Similarity=0.095 Sum_probs=51.3
Q ss_pred CCCCCeEEEEcCCc-cHHHHHHHHHCCCCeEEEeec-hhHhhhCCCCCCe-EEE--------------------------
Q 035738 188 FDNIKQLVDVGGGI-GVTLQAITTKYPYIKGINFDL-PHVIEHVPPHPCM-WIL-------------------------- 238 (333)
Q Consensus 188 ~~~~~~vlDVGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~gv-~vL-------------------------- 238 (333)
.....+||-+|+|. |..+..+++...--++++.|. +.-.+.+++. |. .++
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-Ga~~vi~~~~~~~~~~~~~i~~~~~~g~D~vi 247 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI-GADLVLQISKESPQEIARKVEGQLGCKPEVTI 247 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT-TCSEEEECSSCCHHHHHHHHHHHHTSCCSEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CCCEEEcCcccccchHHHHHHHHhCCCCCEEE
Confidence 66788999999875 888888888775337888886 5544544332 11 222
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 035738 239 HDWNDEHCLKLLKNCYKSIPEDGKVIAVEL 268 (333)
Q Consensus 239 h~~~~~~~~~lL~~~~~~L~pgG~l~i~e~ 268 (333)
..... ...++.+.+.|+|+|+++++-.
T Consensus 248 d~~g~---~~~~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 248 ECTGA---EASIQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp ECSCC---HHHHHHHHHHSCTTCEEEECSC
T ss_pred ECCCC---hHHHHHHHHHhcCCCEEEEEec
Confidence 11111 1357788899999999988754
No 492
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}
Probab=76.35 E-value=5.7 Score=35.56 Aligned_cols=75 Identities=17% Similarity=0.252 Sum_probs=51.7
Q ss_pred CCCeEEEEc--CCccHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC---------------------CCe-EEEccCChh
Q 035738 190 NIKQLVDVG--GGIGVTLQAITTKYPYIKGINFDL-PHVIEHVPPH---------------------PCM-WILHDWNDE 244 (333)
Q Consensus 190 ~~~~vlDVG--gG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------------~gv-~vLh~~~~~ 244 (333)
...+||-+| ||.|..+..+++.....++++.|. +.-++.+++. .++ .++.....+
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~~~~~g~Dvvid~~g~~ 250 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAFVFSTTHTD 250 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEEECTTSCHHHHHHTTCSCCEEEEEECSCHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHhcCCCceEEEECCCch
Confidence 567899998 456888889998766778999887 5555544332 012 222222222
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEe
Q 035738 245 HCLKLLKNCYKSIPEDGKVIAVE 267 (333)
Q Consensus 245 ~~~~lL~~~~~~L~pgG~l~i~e 267 (333)
..++.+.+.|+|+|+++++.
T Consensus 251 ---~~~~~~~~~l~~~G~iv~~g 270 (363)
T 4dvj_A 251 ---KHAAEIADLIAPQGRFCLID 270 (363)
T ss_dssp ---HHHHHHHHHSCTTCEEEECS
T ss_pred ---hhHHHHHHHhcCCCEEEEEC
Confidence 47888899999999999883
No 493
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=76.17 E-value=1.7 Score=33.64 Aligned_cols=54 Identities=17% Similarity=0.210 Sum_probs=41.7
Q ss_pred HHHHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCC-CcccHHHHHHHHhcccceeeec
Q 035738 31 AVYELGIFEIIDKAGPGAKLSASDIAAQLTTKNKD-APMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 31 ~a~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~-~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
+..+.-|++.|.+. ++.|++||.+.+.-+.|. +..-+.|.|+.|+..|++.+..
T Consensus 18 T~qR~~Il~~l~~~---~h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i~ 72 (145)
T 3eyy_A 18 TPQRQLVLEAVDTL---EHATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAH 72 (145)
T ss_dssp CHHHHHHHHHHHHH---SSBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred CHHHHHHHHHHHhc---CCCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEEE
Confidence 34566688888876 389999999998421111 7778999999999999999874
No 494
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=76.05 E-value=3.1 Score=30.45 Aligned_cols=47 Identities=6% Similarity=0.051 Sum_probs=37.6
Q ss_pred CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCc--ccccccc
Q 035738 49 KLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGA--RRLYSLN 99 (333)
Q Consensus 49 ~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~--~~~y~~t 99 (333)
..++..|.+.+|+ +.+-++..+.+|..+|+-.+..++|.. .+.|+++
T Consensus 33 ~~nvp~L~~~TGm----PRRTiQd~I~aL~elgI~~~FvQ~G~R~n~GyY~I~ 81 (117)
T 3ke2_A 33 RHNLLSLGKLTGM----PRRTLQDAIASFADIGIEVEFVQDGERHNAGYYRIR 81 (117)
T ss_dssp CCCHHHHHHHHCC----CHHHHHHHHHTGGGGTCEEEEECCTTCCSCCEEEEE
T ss_pred CCCHHHHHHHHCC----CHhHHHHHHHHhhhCCeEEEEEeccccCCCccEEEe
Confidence 5699999999999 999999999999999998886544421 2456654
No 495
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=75.55 E-value=1.2 Score=40.37 Aligned_cols=53 Identities=19% Similarity=0.232 Sum_probs=43.9
Q ss_pred HhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeeccCCCcccccccc
Q 035738 34 ELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLN 99 (333)
Q Consensus 34 ~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~~y~~t 99 (333)
+..|++.|.. +|.++++|++++|+ +...+...|-.|.-.|++... .+++|+++
T Consensus 330 ~~~vl~~l~~----~~~~~D~l~~~~gl----~~~~v~~~L~~LEl~G~v~~~-----~Gg~~~~~ 382 (382)
T 3maj_A 330 RTRILALLGP----SPVGIDDLIRLSGI----SPAVVRTILLELELAGRLERH-----GGSLVSLS 382 (382)
T ss_dssp HHHHHHHCCS----SCEEHHHHHHHHCC----CHHHHHHHHHHHHHTTCCEEC-----TTSEEEC-
T ss_pred HHHHHHhhCC----CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCcEEeC-----CCceEecC
Confidence 4458888875 49999999999999 899999999999999999987 36677653
No 496
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=75.46 E-value=1 Score=42.13 Aligned_cols=50 Identities=20% Similarity=0.242 Sum_probs=41.4
Q ss_pred HHhChhhHhhhcCCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcccceeeec
Q 035738 33 YELGIFEIIDKAGPGAKLSASDIAAQLTTKNKDAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 33 ~~lglfd~L~~~~~~g~~t~~ela~~~g~~~~~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
-+..++..|.+.+ ++++|..|||+.+++ ++..+.|+++-|...|+|++..
T Consensus 405 ~q~~vl~~l~~~~-~~~~~~~~l~~~~~~----~~~~~t~~~~~le~~g~v~r~~ 454 (487)
T 1hsj_A 405 EEIYILNHILRSE-SNEISSKEIAKCSEF----KPYYLTKALQKLKDLKLLSKKR 454 (487)
T ss_dssp HHHHHHHHHHTCS-CSEEEHHHHHHSSCC----CHHHHHHHHHHHHTTTTSCCEE
T ss_pred HHHHHHHHHHhCC-CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecC
Confidence 3455667776641 148999999999999 9999999999999999999873
No 497
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=75.16 E-value=1.6 Score=34.03 Aligned_cols=52 Identities=17% Similarity=0.275 Sum_probs=40.9
Q ss_pred HHHHhChhhHhhhcCCCCCCCHHHHHHHh-----CCCCCCCcccHHHHHHHHhcccceeeec
Q 035738 31 AVYELGIFEIIDKAGPGAKLSASDIAAQL-----TTKNKDAPMMLDRILRLLASYSVVECSL 87 (333)
Q Consensus 31 ~a~~lglfd~L~~~~~~g~~t~~ela~~~-----g~~~~~~~~~l~~lL~~L~~~g~l~~~~ 87 (333)
+-.+.-|++.|...+ .++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+..
T Consensus 16 T~qR~~Il~~L~~~~-~~h~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~ 72 (150)
T 2w57_A 16 TLPRLKILEVLQQPE-CQHISAEELYKKLIDLGEEI----GLATVYRVLNQFDDAGIVTRHH 72 (150)
T ss_dssp CHHHHHHHHHHTSGG-GSSEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHHhCC-CCCCCHHHHHHHHHHhCCCC----CHHHHHHHHHHHHHCCcEEEEE
Confidence 344556788886531 0389999999999 56 7888999999999999999873
No 498
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=74.79 E-value=2.5 Score=31.72 Aligned_cols=74 Identities=12% Similarity=0.146 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHhChhhHhhhcCCCCCCCHHHHHHHh-----CCCCCCCcccHHHHHHHHhcccceeeecc--CCCccccc
Q 035738 24 VLPMAMQAVYELGIFEIIDKAGPGAKLSASDIAAQL-----TTKNKDAPMMLDRILRLLASYSVVECSLD--ASGARRLY 96 (333)
Q Consensus 24 ~~~~~l~~a~~lglfd~L~~~~~~g~~t~~ela~~~-----g~~~~~~~~~l~~lL~~L~~~g~l~~~~~--~~~~~~~y 96 (333)
+..+.++-..++=|+..|. . |.+--+|.+.+ ++ ++.-+...|+-|...|+|..... +++....|
T Consensus 13 ~~~~l~~g~l~~~IL~lL~-~----p~~GYei~~~l~~~~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y 83 (123)
T 3ri2_A 13 MVLELRRGTLVMLVLSQLR-E----PAYGYALVKSLADHGIPI----EANTLYPLMRRLESQGLLASEWDNGGSKPRKYY 83 (123)
T ss_dssp HHHHHHHHHHHHHHHHHTT-S----CEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEE
T ss_pred HHHHHHhCcHHHHHHHHHc-C----CCCHHHHHHHHHHhCCCC----CcchHHHHHHHHHHCCCEEEEeccCCCCCceEE
Confidence 4556666677777788887 3 78888888885 67 89999999999999999997631 12223458
Q ss_pred cccccccccc
Q 035738 97 SLNSVSKYYV 106 (333)
Q Consensus 97 ~~t~~~~~l~ 106 (333)
++|+.+...+
T Consensus 84 ~LT~~Gr~~l 93 (123)
T 3ri2_A 84 RTTDEGLRVL 93 (123)
T ss_dssp EECHHHHHHH
T ss_pred EECHHHHHHH
Confidence 8888776544
No 499
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=74.70 E-value=3.3 Score=32.16 Aligned_cols=62 Identities=13% Similarity=0.280 Sum_probs=45.3
Q ss_pred hhhHhhhcCCCCCCCHHHHHHHh-------CCCCCCCcccHHHHHHHHhcccceeeecc----CCCcccccccccccccc
Q 035738 37 IFEIIDKAGPGAKLSASDIAAQL-------TTKNKDAPMMLDRILRLLASYSVVECSLD----ASGARRLYSLNSVSKYY 105 (333)
Q Consensus 37 lfd~L~~~~~~g~~t~~ela~~~-------g~~~~~~~~~l~~lL~~L~~~g~l~~~~~----~~~~~~~y~~t~~~~~l 105 (333)
|+..|.+ +|.+--+|.+.+ ++ ++..+...|+-|...|+|+.... +|+....|++|+.++..
T Consensus 49 IL~lL~~----~p~~GYeI~k~l~~~~~~~~i----s~gtLYp~L~rLE~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~ 120 (148)
T 2zfw_A 49 VLAVLRH----EDSYGTELIQHLETHWPNYRL----SDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDR 120 (148)
T ss_dssp HHHHHTT----CCEEHHHHHHHHHHHCTTEEC----CSHHHHHHHHHHHHTSSEEEECCCCTTSSCCCCEEEESSSSCST
T ss_pred HHHHHHh----CCCcHHHHHHHHHHHcCCCCC----ChhHHHHHHHHHHHCCCEEEEeeccCCCCCCcEEEEECHHHHHH
Confidence 4566665 488888888777 47 88999999999999999998632 12233458888877654
Q ss_pred c
Q 035738 106 V 106 (333)
Q Consensus 106 ~ 106 (333)
+
T Consensus 121 l 121 (148)
T 2zfw_A 121 S 121 (148)
T ss_dssp T
T ss_pred H
Confidence 4
No 500
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1
Probab=74.64 E-value=3.7 Score=36.83 Aligned_cols=79 Identities=16% Similarity=0.156 Sum_probs=52.4
Q ss_pred CCCCCeEEEEcCCc-cHHHHHHHHHCCCCeEEEeec-hhHhhhCCCC----------C------------Ce-EEEccCC
Q 035738 188 FDNIKQLVDVGGGI-GVTLQAITTKYPYIKGINFDL-PHVIEHVPPH----------P------------CM-WILHDWN 242 (333)
Q Consensus 188 ~~~~~~vlDVGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~------------gv-~vLh~~~ 242 (333)
.....+||.+|+|. |..+..+++...--+++++|. +.-++.+++. . ++ .++....
T Consensus 188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~g 267 (371)
T 1f8f_A 188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTG 267 (371)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECCC
Confidence 66788999999876 888888888764336888886 5555444321 0 12 2222222
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEeee
Q 035738 243 DEHCLKLLKNCYKSIPEDGKVIAVELM 269 (333)
Q Consensus 243 ~~~~~~lL~~~~~~L~pgG~l~i~e~~ 269 (333)
.+ ..++.+.+.|+|+|+++++-..
T Consensus 268 ~~---~~~~~~~~~l~~~G~iv~~G~~ 291 (371)
T 1f8f_A 268 SP---EILKQGVDALGILGKIAVVGAP 291 (371)
T ss_dssp CH---HHHHHHHHTEEEEEEEEECCCC
T ss_pred CH---HHHHHHHHHHhcCCEEEEeCCC
Confidence 22 4688889999999999887553
Done!