Query 035739
Match_columns 335
No_of_seqs 157 out of 1542
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 05:56:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035739.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035739hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0656 ARA1 Aldo/keto reducta 100.0 6.5E-66 1.4E-70 459.3 28.5 267 11-314 2-268 (280)
2 KOG1577 Aldo/keto reductase fa 100.0 2.6E-64 5.5E-69 448.9 30.1 281 14-314 6-289 (300)
3 COG0667 Tas Predicted oxidored 100.0 2E-59 4.3E-64 433.0 29.5 272 12-312 1-311 (316)
4 KOG1575 Voltage-gated shaker-l 100.0 5.8E-59 1.3E-63 422.0 28.3 291 2-319 2-334 (336)
5 PRK11172 dkgB 2,5-diketo-D-glu 100.0 1.9E-57 4.2E-62 412.5 30.2 254 24-313 1-255 (267)
6 PRK09912 L-glyceraldehyde 3-ph 100.0 2.6E-56 5.5E-61 419.2 30.3 273 10-311 11-334 (346)
7 PRK10625 tas putative aldo-ket 100.0 2.8E-56 6.1E-61 419.4 29.8 284 12-311 1-340 (346)
8 TIGR01293 Kv_beta voltage-depe 100.0 2.7E-56 5.9E-61 414.7 29.0 266 14-308 1-316 (317)
9 PRK11565 dkgA 2,5-diketo-D-glu 100.0 8.7E-55 1.9E-59 396.4 29.9 261 13-313 5-265 (275)
10 PLN02587 L-galactose dehydroge 100.0 1.2E-54 2.6E-59 403.3 29.6 274 14-311 1-301 (314)
11 cd06660 Aldo_ket_red Aldo-keto 100.0 9.8E-54 2.1E-58 392.1 29.9 266 14-308 1-285 (285)
12 PRK10376 putative oxidoreducta 100.0 3.8E-52 8.2E-57 382.1 29.2 265 14-310 9-288 (290)
13 PF00248 Aldo_ket_red: Aldo/ke 100.0 1.8E-52 3.9E-57 383.4 24.4 256 28-309 1-282 (283)
14 PRK14863 bifunctional regulato 100.0 6E-51 1.3E-55 373.7 22.1 259 22-307 2-279 (292)
15 COG4989 Predicted oxidoreducta 100.0 4.9E-50 1.1E-54 342.8 19.1 271 12-311 1-294 (298)
16 COG1453 Predicted oxidoreducta 100.0 6.4E-50 1.4E-54 360.2 19.0 291 12-332 1-310 (391)
17 KOG1576 Predicted oxidoreducta 100.0 3E-46 6.5E-51 321.8 19.4 291 8-323 18-336 (342)
18 KOG3023 Glutamate-cysteine lig 98.6 7.4E-08 1.6E-12 83.1 6.4 139 93-231 73-228 (285)
19 PRK08392 hypothetical protein; 92.2 7.4 0.00016 33.9 15.7 180 50-264 15-209 (215)
20 TIGR00190 thiC thiamine biosyn 89.4 20 0.00044 34.2 19.7 149 47-238 75-230 (423)
21 PF07021 MetW: Methionine bios 89.2 4.5 9.7E-05 34.7 9.6 100 117-234 64-170 (193)
22 PRK10558 alpha-dehydro-beta-de 87.8 3.9 8.4E-05 36.9 8.9 102 166-296 10-116 (256)
23 PRK08609 hypothetical protein; 86.8 38 0.00082 34.3 17.3 184 50-264 350-553 (570)
24 PRK10128 2-keto-3-deoxy-L-rham 85.7 9.9 0.00021 34.5 10.4 103 166-296 9-115 (267)
25 TIGR03239 GarL 2-dehydro-3-deo 83.0 12 0.00025 33.6 9.6 98 169-295 6-108 (249)
26 PRK13352 thiamine biosynthesis 82.2 49 0.0011 31.8 20.5 149 47-238 75-233 (431)
27 COG2040 MHT1 Homocysteine/sele 81.2 23 0.0005 32.3 10.5 216 47-293 41-296 (300)
28 PRK13796 GTPase YqeH; Provisio 79.5 39 0.00085 32.1 12.4 140 27-193 34-182 (365)
29 TIGR02026 BchE magnesium-proto 79.4 34 0.00073 34.0 12.4 129 153-292 218-361 (497)
30 PRK07945 hypothetical protein; 79.0 57 0.0012 30.6 17.7 106 49-180 111-227 (335)
31 COG1748 LYS9 Saccharopine dehy 78.3 17 0.00037 34.8 9.4 79 50-140 80-159 (389)
32 PF03102 NeuB: NeuB family; I 78.3 13 0.00029 33.1 8.2 116 45-187 52-184 (241)
33 PRK00912 ribonuclease P protei 76.6 49 0.0011 29.2 11.5 170 48-264 15-202 (237)
34 COG0761 lytB 4-Hydroxy-3-methy 76.5 61 0.0013 29.6 13.2 70 210-290 201-277 (294)
35 TIGR00216 ispH_lytB (E)-4-hydr 75.9 18 0.00039 33.0 8.5 115 165-290 146-273 (280)
36 COG2089 SpsE Sialic acid synth 75.2 68 0.0015 29.9 11.8 118 45-193 86-224 (347)
37 TIGR02311 HpaI 2,4-dihydroxyhe 74.1 34 0.00074 30.6 9.8 100 167-295 4-108 (249)
38 TIGR00381 cdhD CO dehydrogenas 73.9 81 0.0017 30.2 12.4 97 122-234 150-251 (389)
39 PRK07535 methyltetrahydrofolat 73.7 40 0.00086 30.5 10.2 102 110-232 24-125 (261)
40 KOG0259 Tyrosine aminotransfer 73.7 50 0.0011 31.5 10.8 50 47-103 79-135 (447)
41 COG3623 SgaU Putative L-xylulo 72.0 44 0.00095 29.6 9.4 74 20-103 66-155 (287)
42 cd03319 L-Ala-DL-Glu_epimerase 71.3 85 0.0019 28.9 15.7 150 47-233 134-289 (316)
43 PRK12360 4-hydroxy-3-methylbut 70.9 31 0.00068 31.5 8.8 107 173-290 157-274 (281)
44 PRK00164 moaA molybdenum cofac 69.5 96 0.0021 28.8 14.3 129 45-195 48-183 (331)
45 cd01965 Nitrogenase_MoFe_beta_ 69.1 65 0.0014 31.2 11.3 112 70-201 61-187 (428)
46 cd03316 MR_like Mandelate race 67.8 1.1E+02 0.0023 28.7 15.4 148 47-230 139-298 (357)
47 PRK07094 biotin synthase; Prov 67.0 67 0.0014 29.7 10.5 121 158-293 71-204 (323)
48 cd01973 Nitrogenase_VFe_beta_l 66.4 1.4E+02 0.003 29.4 13.7 117 67-199 63-191 (454)
49 PF02401 LYTB: LytB protein; 66.0 28 0.00062 31.8 7.5 107 173-290 155-274 (281)
50 COG1140 NarY Nitrate reductase 64.4 4.6 0.0001 38.0 2.1 53 172-225 263-317 (513)
51 cd03174 DRE_TIM_metallolyase D 64.1 33 0.00072 30.5 7.7 98 114-230 21-135 (265)
52 TIGR01228 hutU urocanate hydra 62.9 30 0.00066 33.9 7.3 128 54-207 108-259 (545)
53 KOG0369 Pyruvate carboxylase [ 62.4 1.1E+02 0.0023 31.6 11.0 149 49-237 43-197 (1176)
54 PF01964 ThiC: ThiC family; I 62.4 39 0.00084 32.4 7.7 144 47-238 74-229 (420)
55 PRK05414 urocanate hydratase; 62.4 32 0.00069 33.9 7.3 128 54-207 117-268 (556)
56 PF00809 Pterin_bind: Pterin b 61.8 39 0.00084 29.3 7.4 68 159-232 56-125 (210)
57 PRK04452 acetyl-CoA decarbonyl 61.7 1.2E+02 0.0027 28.2 10.9 117 119-263 83-205 (319)
58 PRK07328 histidinol-phosphatas 61.7 1.2E+02 0.0027 27.2 13.6 120 50-179 19-159 (269)
59 PRK01045 ispH 4-hydroxy-3-meth 61.5 1.4E+02 0.0029 27.7 15.2 69 211-290 200-275 (298)
60 COG2200 Rtn c-di-GMP phosphodi 60.9 40 0.00086 30.2 7.5 172 53-273 53-239 (256)
61 cd00740 MeTr MeTr subgroup of 60.8 1.3E+02 0.0027 27.0 10.8 105 108-232 23-128 (252)
62 cd03315 MLE_like Muconate lact 60.3 1.3E+02 0.0028 26.9 14.6 152 47-234 85-242 (265)
63 COG0635 HemN Coproporphyrinoge 59.1 71 0.0015 31.0 9.3 75 106-185 199-276 (416)
64 PRK06361 hypothetical protein; 58.7 1.2E+02 0.0026 26.1 14.7 184 50-268 11-200 (212)
65 PRK05692 hydroxymethylglutaryl 58.7 77 0.0017 29.0 9.1 100 112-229 26-139 (287)
66 PLN02746 hydroxymethylglutaryl 58.6 1.1E+02 0.0024 28.9 10.3 102 111-230 67-182 (347)
67 COG1149 MinD superfamily P-loo 57.2 17 0.00037 32.9 4.3 50 183-234 201-250 (284)
68 PRK09058 coproporphyrinogen II 56.8 2E+02 0.0044 28.1 13.0 124 110-233 42-183 (449)
69 PRK11858 aksA trans-homoaconit 56.6 1.4E+02 0.003 28.5 10.8 97 113-232 27-138 (378)
70 PLN02489 homocysteine S-methyl 56.6 1.7E+02 0.0038 27.4 21.8 217 47-294 53-332 (335)
71 PRK12581 oxaloacetate decarbox 56.2 2.1E+02 0.0046 28.2 17.4 115 45-184 101-215 (468)
72 TIGR02932 vnfK_nitrog V-contai 56.0 2.1E+02 0.0045 28.1 12.5 129 58-201 52-197 (457)
73 TIGR01496 DHPS dihydropteroate 55.8 1.5E+02 0.0034 26.5 10.6 100 109-230 21-125 (257)
74 cd01974 Nitrogenase_MoFe_beta 55.4 1.6E+02 0.0036 28.5 11.3 117 68-200 63-191 (435)
75 cd07944 DRE_TIM_HOA_like 4-hyd 54.4 1E+02 0.0022 27.8 9.1 107 112-230 20-129 (266)
76 PF01408 GFO_IDH_MocA: Oxidore 54.4 93 0.002 23.6 8.2 85 166-259 16-114 (120)
77 COG4943 Predicted signal trans 54.2 1.2E+02 0.0027 29.8 9.8 126 77-229 343-477 (524)
78 cd00739 DHPS DHPS subgroup of 53.4 1.6E+02 0.0034 26.5 10.0 105 110-231 23-128 (257)
79 PF01175 Urocanase: Urocanase; 51.6 47 0.001 32.8 6.6 129 53-207 106-258 (546)
80 TIGR00289 conserved hypothetic 49.9 1.2E+02 0.0026 26.6 8.5 132 186-331 48-196 (222)
81 PLN02444 HMP-P synthase 49.8 2.9E+02 0.0063 27.9 19.4 144 47-234 235-385 (642)
82 PRK08195 4-hyroxy-2-oxovalerat 49.8 2.3E+02 0.0049 26.6 11.5 24 46-69 22-45 (337)
83 PRK13361 molybdenum cofactor b 49.7 2.2E+02 0.0047 26.5 18.0 107 45-174 44-154 (329)
84 PF07287 DUF1446: Protein of u 49.7 75 0.0016 30.2 7.6 88 162-260 11-100 (362)
85 TIGR03822 AblA_like_2 lysine-2 49.5 1.9E+02 0.0041 26.9 10.3 76 159-237 152-240 (321)
86 PRK06740 histidinol-phosphatas 48.5 2.3E+02 0.0051 26.4 12.2 61 115-179 156-220 (331)
87 PRK13602 putative ribosomal pr 48.4 48 0.001 24.1 4.8 58 166-230 3-60 (82)
88 cd07948 DRE_TIM_HCS Saccharomy 48.2 1.3E+02 0.0029 27.0 8.7 95 113-230 23-132 (262)
89 cd00308 enolase_like Enolase-s 47.7 87 0.0019 27.3 7.4 70 163-234 134-207 (229)
90 PRK00087 4-hydroxy-3-methylbut 47.5 1E+02 0.0022 31.8 8.7 113 166-289 147-270 (647)
91 TIGR02660 nifV_homocitr homoci 47.1 2.4E+02 0.0052 26.7 10.7 93 113-228 24-131 (365)
92 PRK07534 methionine synthase I 47.0 2.5E+02 0.0054 26.3 20.6 209 47-294 43-294 (336)
93 PRK05283 deoxyribose-phosphate 46.7 1.7E+02 0.0037 26.4 9.0 78 47-130 144-227 (257)
94 PF15221 LEP503: Lens epitheli 46.6 15 0.00032 24.4 1.6 35 1-37 1-38 (61)
95 PF03851 UvdE: UV-endonuclease 46.5 1E+02 0.0022 28.2 7.6 78 49-136 45-152 (275)
96 COG4152 ABC-type uncharacteriz 46.5 1.8E+02 0.0039 26.4 8.8 37 157-195 164-200 (300)
97 COG1751 Uncharacterized conser 46.1 1.7E+02 0.0037 24.2 8.2 74 159-232 12-92 (186)
98 PLN02951 Molybderin biosynthes 45.9 1.8E+02 0.0038 27.8 9.6 22 46-67 90-111 (373)
99 PF01487 DHquinase_I: Type I 3 45.7 2E+02 0.0044 24.9 11.0 122 46-193 72-193 (224)
100 TIGR03471 HpnJ hopanoid biosyn 45.5 2.7E+02 0.0057 27.4 11.1 124 154-292 224-361 (472)
101 cd03322 rpsA The starvation se 45.5 2.7E+02 0.0058 26.3 13.9 145 47-232 126-274 (361)
102 COG1751 Uncharacterized conser 45.3 62 0.0013 26.7 5.4 72 48-127 13-85 (186)
103 PRK09061 D-glutamate deacylase 45.1 3.1E+02 0.0067 27.3 11.6 113 50-184 170-286 (509)
104 TIGR03569 NeuB_NnaB N-acetylne 44.8 2.7E+02 0.0059 26.1 11.3 115 45-188 72-207 (329)
105 PF11242 DUF2774: Protein of u 44.7 32 0.00069 23.6 3.0 23 249-271 15-37 (63)
106 PLN02540 methylenetetrahydrofo 44.2 3.6E+02 0.0078 27.4 16.3 161 48-228 14-202 (565)
107 TIGR01579 MiaB-like-C MiaB-lik 43.9 2.9E+02 0.0062 26.6 11.0 131 153-294 163-315 (414)
108 PF00682 HMGL-like: HMGL-like 43.7 1.2E+02 0.0026 26.5 7.7 142 112-295 14-177 (237)
109 COG2873 MET17 O-acetylhomoseri 43.6 2.3E+02 0.0049 27.2 9.5 66 47-127 63-128 (426)
110 cd04740 DHOD_1B_like Dihydroor 43.5 2.5E+02 0.0055 25.4 14.2 135 47-193 100-251 (296)
111 PF05690 ThiG: Thiazole biosyn 43.5 1.5E+02 0.0033 26.4 7.9 132 26-193 8-142 (247)
112 PRK09058 coproporphyrinogen II 43.2 3.3E+02 0.0071 26.6 11.5 123 53-184 164-303 (449)
113 cd00423 Pterin_binding Pterin 42.9 2.5E+02 0.0053 25.1 12.3 107 109-232 22-129 (258)
114 TIGR00126 deoC deoxyribose-pho 42.7 1.6E+02 0.0034 25.7 8.0 72 47-128 130-205 (211)
115 PRK04390 rnpA ribonuclease P; 42.5 1.4E+02 0.0031 23.3 7.1 65 93-172 44-110 (120)
116 TIGR03597 GTPase_YqeH ribosome 42.4 3E+02 0.0065 26.0 11.4 140 27-193 28-176 (360)
117 PRK08776 cystathionine gamma-s 41.2 3.2E+02 0.0069 26.3 10.7 74 160-234 110-186 (405)
118 PF00682 HMGL-like: HMGL-like 41.2 2.1E+02 0.0046 24.8 8.9 124 46-193 11-144 (237)
119 COG2159 Predicted metal-depend 40.9 2.9E+02 0.0062 25.3 10.3 91 121-233 55-167 (293)
120 TIGR00735 hisF imidazoleglycer 40.8 2.6E+02 0.0057 24.8 11.0 64 163-226 188-253 (254)
121 COG0171 NadE NAD synthase [Coe 40.7 1E+02 0.0023 27.9 6.8 156 166-334 20-199 (268)
122 COG2987 HutU Urocanate hydrata 40.5 74 0.0016 31.0 5.9 108 74-207 149-268 (561)
123 TIGR02026 BchE magnesium-proto 40.3 3.8E+02 0.0083 26.6 11.9 65 158-224 321-392 (497)
124 COG0626 MetC Cystathionine bet 39.7 1.2E+02 0.0025 29.3 7.3 80 159-239 112-194 (396)
125 cd00405 PRAI Phosphoribosylant 39.6 2.1E+02 0.0045 24.4 8.4 41 128-188 73-113 (203)
126 PRK05588 histidinol-phosphatas 39.5 2.7E+02 0.0059 24.6 15.1 80 49-138 16-103 (255)
127 cd07943 DRE_TIM_HOA 4-hydroxy- 39.0 2.8E+02 0.0062 24.7 10.9 24 46-69 19-42 (263)
128 TIGR03700 mena_SCO4494 putativ 38.7 3.4E+02 0.0073 25.5 11.9 139 109-292 80-225 (351)
129 PRK09284 thiamine biosynthesis 38.3 4.4E+02 0.0094 26.6 19.6 144 47-234 230-380 (607)
130 COG2102 Predicted ATPases of P 38.2 58 0.0013 28.6 4.5 94 158-262 74-177 (223)
131 cd07943 DRE_TIM_HOA 4-hydroxy- 38.2 1.9E+02 0.0041 25.9 8.2 104 112-229 22-131 (263)
132 PRK00730 rnpA ribonuclease P; 38.1 1.8E+02 0.0038 23.6 7.0 63 93-172 46-110 (138)
133 cd08319 Death_RAIDD Death doma 37.9 40 0.00087 24.7 3.0 72 111-204 10-81 (83)
134 PRK01018 50S ribosomal protein 37.7 98 0.0021 23.3 5.3 61 162-229 4-64 (99)
135 KOG0059 Lipid exporter ABCA1 a 37.5 1.4E+02 0.0031 32.0 8.3 54 128-196 716-769 (885)
136 PF00155 Aminotran_1_2: Aminot 37.3 2.4E+02 0.0053 26.0 9.2 52 182-233 129-191 (363)
137 COG0773 MurC UDP-N-acetylmuram 37.2 17 0.00037 35.5 1.2 25 173-197 8-32 (459)
138 PRK13347 coproporphyrinogen II 37.1 4.1E+02 0.0088 26.0 12.7 59 174-232 103-171 (453)
139 TIGR01278 DPOR_BchB light-inde 37.0 2.4E+02 0.0051 28.2 9.3 109 71-199 66-191 (511)
140 PRK10799 metal-binding protein 36.9 52 0.0011 29.4 4.2 44 55-101 200-243 (247)
141 PRK14335 (dimethylallyl)adenos 36.8 4E+02 0.0088 26.0 10.8 129 153-293 177-334 (455)
142 COG1121 ZnuC ABC-type Mn/Zn tr 36.7 1.2E+02 0.0027 27.2 6.5 50 127-191 156-205 (254)
143 COG4669 EscJ Type III secretor 36.6 2.1E+02 0.0045 25.5 7.6 80 44-125 26-122 (246)
144 PRK10415 tRNA-dihydrouridine s 36.5 3.5E+02 0.0077 25.1 12.4 127 47-197 75-218 (321)
145 cd03318 MLE Muconate Lactonizi 36.3 88 0.0019 29.5 6.0 64 163-228 228-295 (365)
146 cd07939 DRE_TIM_NifV Streptomy 36.1 3.1E+02 0.0068 24.4 11.2 94 112-228 20-128 (259)
147 PF03102 NeuB: NeuB family; I 36.1 1.4E+02 0.003 26.6 6.8 66 213-293 59-135 (241)
148 PRK03031 rnpA ribonuclease P; 35.7 1.9E+02 0.0042 22.6 6.9 65 93-172 47-114 (122)
149 COG1099 Predicted metal-depend 35.0 3.2E+02 0.007 24.2 9.3 117 167-291 57-199 (254)
150 PRK15408 autoinducer 2-binding 34.9 3.8E+02 0.0082 24.9 11.3 77 93-192 22-98 (336)
151 PF01118 Semialdhyde_dh: Semia 34.3 59 0.0013 25.2 3.8 27 47-73 75-101 (121)
152 TIGR00676 fadh2 5,10-methylene 34.2 3.5E+02 0.0076 24.4 15.3 155 49-226 15-186 (272)
153 COG4626 Phage terminase-like p 34.0 1.5E+02 0.0032 29.8 7.1 45 157-201 410-454 (546)
154 TIGR03677 rpl7ae 50S ribosomal 33.7 1.7E+02 0.0037 22.8 6.2 65 159-229 11-75 (117)
155 COG4555 NatA ABC-type Na+ tran 33.2 1.9E+02 0.004 25.5 6.7 34 159-194 169-202 (245)
156 cd01822 Lysophospholipase_L1_l 32.6 2.2E+02 0.0047 23.0 7.2 59 173-231 37-109 (177)
157 cd03323 D-glucarate_dehydratas 32.4 1.4E+02 0.003 28.7 6.6 69 162-232 249-321 (395)
158 PF14871 GHL6: Hypothetical gl 32.4 43 0.00093 26.8 2.6 22 213-234 47-68 (132)
159 smart00148 PLCXc Phospholipase 32.2 2.2E+02 0.0048 22.7 6.9 67 52-121 31-114 (135)
160 PRK04820 rnpA ribonuclease P; 32.0 2.6E+02 0.0056 22.8 7.2 65 93-172 48-114 (145)
161 PRK01492 rnpA ribonuclease P; 31.9 2.5E+02 0.0054 21.9 7.0 62 94-170 47-114 (118)
162 PRK04175 rpl7ae 50S ribosomal 31.8 1.6E+02 0.0034 23.2 5.7 64 160-229 16-79 (122)
163 PRK12928 lipoyl synthase; Prov 31.8 4.1E+02 0.0088 24.3 13.0 77 157-234 185-282 (290)
164 PRK06015 keto-hydroxyglutarate 31.6 1.4E+02 0.0031 25.7 5.9 61 161-228 41-102 (201)
165 TIGR01210 conserved hypothetic 31.5 4.2E+02 0.0091 24.5 16.3 180 46-258 85-280 (313)
166 PF09370 TIM-br_sig_trns: TIM- 31.4 84 0.0018 28.4 4.6 58 159-229 94-156 (268)
167 cd02801 DUS_like_FMN Dihydrour 31.1 3.4E+02 0.0074 23.3 9.7 126 47-196 65-206 (231)
168 PLN02681 proline dehydrogenase 31.0 5.3E+02 0.011 25.4 12.1 172 50-234 221-413 (455)
169 PRK13347 coproporphyrinogen II 30.9 5.1E+02 0.011 25.3 11.4 122 53-185 153-291 (453)
170 PRK06256 biotin synthase; Vali 30.8 3.8E+02 0.0083 24.8 9.2 123 156-293 90-225 (336)
171 TIGR02668 moaA_archaeal probab 30.8 4.1E+02 0.0089 24.1 10.8 106 45-174 39-148 (302)
172 TIGR03586 PseI pseudaminic aci 30.8 4.5E+02 0.0098 24.6 10.4 111 46-187 74-205 (327)
173 PF06506 PrpR_N: Propionate ca 30.6 61 0.0013 27.1 3.5 65 159-228 63-130 (176)
174 PRK00499 rnpA ribonuclease P; 30.6 2.5E+02 0.0055 21.6 6.9 64 93-172 38-104 (114)
175 PRK15072 bifunctional D-altron 30.5 2.5E+02 0.0054 27.0 8.1 69 162-232 245-317 (404)
176 PF08671 SinI: Anti-repressor 30.5 57 0.0012 18.9 2.2 16 49-64 3-18 (30)
177 TIGR02090 LEU1_arch isopropylm 30.2 3.6E+02 0.0079 25.5 9.0 93 113-228 23-130 (363)
178 PRK10605 N-ethylmaleimide redu 30.2 4.8E+02 0.01 24.7 11.7 20 177-196 295-314 (362)
179 TIGR01928 menC_lowGC/arch o-su 30.1 4.5E+02 0.0097 24.3 14.5 150 47-234 132-285 (324)
180 PF13380 CoA_binding_2: CoA bi 30.1 1.8E+02 0.0039 22.4 5.8 22 211-232 90-111 (116)
181 cd01966 Nitrogenase_NifN_1 Nit 29.7 3.5E+02 0.0077 26.1 9.0 114 70-199 61-187 (417)
182 KOG1549 Cysteine desulfurase N 29.4 2.5E+02 0.0054 27.3 7.6 72 162-233 144-221 (428)
183 PRK14457 ribosomal RNA large s 29.4 4.9E+02 0.011 24.5 14.7 149 74-234 163-330 (345)
184 PRK02301 putative deoxyhypusin 29.2 4.8E+02 0.01 24.4 9.2 137 49-232 43-194 (316)
185 PRK12323 DNA polymerase III su 29.1 2.6E+02 0.0056 29.1 8.0 69 108-194 104-174 (700)
186 TIGR03551 F420_cofH 7,8-dideme 28.8 2.9E+02 0.0062 25.9 8.0 125 157-293 70-217 (343)
187 PRK00208 thiG thiazole synthas 28.8 4.3E+02 0.0093 23.7 18.9 72 107-194 72-143 (250)
188 TIGR02534 mucon_cyclo muconate 28.8 1.4E+02 0.0031 28.2 6.0 65 163-229 227-295 (368)
189 COG2355 Zn-dependent dipeptida 28.7 4.8E+02 0.01 24.3 10.0 108 50-182 150-260 (313)
190 cd01971 Nitrogenase_VnfN_like 28.7 4.6E+02 0.01 25.3 9.7 113 70-202 66-192 (427)
191 PRK00396 rnpA ribonuclease P; 28.7 2.7E+02 0.0058 22.2 6.6 64 93-171 46-111 (130)
192 TIGR01182 eda Entner-Doudoroff 28.5 1.9E+02 0.0042 25.0 6.2 61 161-228 45-106 (204)
193 PRK10528 multifunctional acyl- 27.9 2.3E+02 0.0049 23.8 6.6 94 169-263 40-147 (191)
194 TIGR00035 asp_race aspartate r 27.5 1.9E+02 0.0041 25.3 6.2 83 110-197 16-99 (229)
195 PRK14338 (dimethylallyl)adenos 27.3 5.4E+02 0.012 25.2 9.9 130 153-293 180-331 (459)
196 COG3113 Predicted NTP binding 27.3 1.1E+02 0.0024 23.1 3.9 66 113-198 28-93 (99)
197 COG2055 Malate/L-lactate dehyd 27.2 3.4E+02 0.0074 25.7 7.9 91 108-232 6-117 (349)
198 PF04748 Polysacc_deac_2: Dive 27.1 4.2E+02 0.0091 23.0 8.6 84 46-135 71-182 (213)
199 PF02679 ComA: (2R)-phospho-3- 26.9 3.3E+02 0.0071 24.4 7.5 78 49-137 84-169 (244)
200 KOG1720 Protein tyrosine phosp 26.9 1.6E+02 0.0034 25.8 5.2 55 214-279 139-194 (225)
201 COG2949 SanA Uncharacterized m 26.7 4.4E+02 0.0095 23.1 9.1 111 100-232 65-182 (235)
202 PF01053 Cys_Met_Meta_PP: Cys/ 26.6 1.5E+02 0.0033 28.4 5.8 78 159-238 104-185 (386)
203 PRK08255 salicylyl-CoA 5-hydro 26.6 7.8E+02 0.017 26.0 12.9 91 94-198 616-712 (765)
204 TIGR00290 MJ0570_dom MJ0570-re 26.6 4.4E+02 0.0096 23.1 8.9 85 213-310 75-169 (223)
205 COG3454 Metal-dependent hydrol 26.5 47 0.001 31.0 2.1 70 159-229 141-229 (377)
206 PRK09490 metH B12-dependent me 26.4 9.7E+02 0.021 27.0 12.7 57 177-233 433-490 (1229)
207 COG1801 Uncharacterized conser 26.2 4.9E+02 0.011 23.5 11.5 76 56-140 30-115 (263)
208 PF11181 YflT: Heat induced st 26.0 1.2E+02 0.0025 23.0 4.0 29 72-102 6-34 (103)
209 KOG0256 1-aminocyclopropane-1- 26.0 1.9E+02 0.0042 28.0 6.1 22 213-234 249-270 (471)
210 cd06543 GH18_PF-ChiA-like PF-C 25.9 5.2E+02 0.011 23.7 18.7 180 29-234 72-264 (294)
211 PRK14017 galactonate dehydrata 25.9 3.4E+02 0.0074 25.8 8.1 67 163-231 217-287 (382)
212 cd01306 PhnM PhnM is believed 25.9 1.9E+02 0.004 27.1 6.1 71 159-230 94-183 (325)
213 PF01248 Ribosomal_L7Ae: Ribos 25.9 1.5E+02 0.0032 21.7 4.5 64 161-230 2-65 (95)
214 PRK14455 ribosomal RNA large s 25.8 3.4E+02 0.0073 25.7 7.9 78 157-234 243-337 (356)
215 TIGR02082 metH 5-methyltetrahy 25.8 8.8E+02 0.019 27.2 11.9 90 123-231 379-472 (1178)
216 COG0422 ThiC Thiamine biosynth 25.8 6E+02 0.013 24.4 20.5 149 47-238 76-231 (432)
217 PRK06552 keto-hydroxyglutarate 25.8 2E+02 0.0044 25.0 6.0 60 162-228 51-114 (213)
218 PRK14331 (dimethylallyl)adenos 25.6 6.2E+02 0.014 24.5 11.0 133 150-294 168-322 (437)
219 COG1131 CcmA ABC-type multidru 25.6 2.3E+02 0.0051 25.8 6.7 67 111-193 139-205 (293)
220 PRK14336 (dimethylallyl)adenos 25.5 5.2E+02 0.011 25.0 9.3 134 148-293 144-300 (418)
221 TIGR02931 anfK_nitrog Fe-only 25.5 6.5E+02 0.014 24.7 13.8 116 69-200 71-199 (461)
222 PF04412 DUF521: Protein of un 25.4 4.1E+02 0.009 25.6 8.4 42 114-173 272-316 (400)
223 PRK14456 ribosomal RNA large s 25.3 3.7E+02 0.0081 25.6 8.1 78 157-234 259-353 (368)
224 PRK01732 rnpA ribonuclease P; 25.3 3.2E+02 0.007 21.1 6.9 65 93-172 45-111 (114)
225 PRK05628 coproporphyrinogen II 25.3 5.8E+02 0.013 24.0 12.2 123 53-184 109-247 (375)
226 PLN03228 methylthioalkylmalate 25.0 4.2E+02 0.0092 26.5 8.6 98 112-231 106-230 (503)
227 PRK00507 deoxyribose-phosphate 25.0 3.5E+02 0.0076 23.7 7.3 73 46-128 133-209 (221)
228 PRK12331 oxaloacetate decarbox 24.9 6E+02 0.013 25.0 9.6 100 115-229 29-142 (448)
229 COG1795 Formaldehyde-activatin 24.9 1.2E+02 0.0027 24.8 4.0 33 71-104 79-115 (170)
230 PRK09249 coproporphyrinogen II 24.9 6.4E+02 0.014 24.6 10.0 74 160-233 84-171 (453)
231 COG1358 RPL8A Ribosomal protei 24.8 2.5E+02 0.0054 22.0 5.7 65 159-229 12-76 (116)
232 cd07937 DRE_TIM_PC_TC_5S Pyruv 24.8 5.2E+02 0.011 23.3 13.4 120 46-193 18-156 (275)
233 COG3215 PilZ Tfp pilus assembl 24.8 1.9E+02 0.0041 22.1 4.7 67 49-123 20-106 (117)
234 PRK09082 methionine aminotrans 24.7 5.9E+02 0.013 23.9 13.8 60 172-232 136-205 (386)
235 TIGR02080 O_succ_thio_ly O-suc 24.7 6.1E+02 0.013 24.1 10.7 74 160-234 101-177 (382)
236 TIGR01918 various_sel_PB selen 24.6 3E+02 0.0064 26.8 7.1 70 163-232 289-373 (431)
237 PRK08599 coproporphyrinogen II 24.5 5.4E+02 0.012 24.3 9.2 75 159-233 34-120 (377)
238 CHL00076 chlB photochlorophyll 24.2 7.3E+02 0.016 24.8 11.8 142 72-233 67-248 (513)
239 COG1448 TyrB Aspartate/tyrosin 24.2 6.5E+02 0.014 24.2 9.8 86 73-176 105-208 (396)
240 COG4451 RbcS Ribulose bisphosp 24.2 3.6E+02 0.0078 21.2 6.4 67 105-184 16-94 (127)
241 PRK07329 hypothetical protein; 24.1 5E+02 0.011 22.9 10.5 74 94-179 66-144 (246)
242 cd07945 DRE_TIM_CMS Leptospira 24.1 5E+02 0.011 23.6 8.4 97 108-229 16-134 (280)
243 TIGR01378 thi_PPkinase thiamin 23.8 3.5E+02 0.0075 23.2 7.0 57 213-293 50-110 (203)
244 PRK13958 N-(5'-phosphoribosyl) 23.8 2.4E+02 0.0053 24.3 6.1 67 120-206 16-83 (207)
245 TIGR02666 moaA molybdenum cofa 23.8 5.8E+02 0.013 23.5 17.6 106 45-174 42-153 (334)
246 PRK08247 cystathionine gamma-s 23.7 3.3E+02 0.0072 25.6 7.5 59 175-234 116-177 (366)
247 PRK09613 thiH thiamine biosynt 23.7 3.5E+02 0.0076 26.7 7.8 107 109-233 116-242 (469)
248 PRK01060 endonuclease IV; Prov 23.7 2.7E+02 0.0059 24.8 6.7 18 119-137 19-36 (281)
249 TIGR01917 gly_red_sel_B glycin 23.7 2.9E+02 0.0064 26.8 6.9 70 163-232 289-373 (431)
250 PRK09413 IS2 repressor TnpA; R 23.6 1.5E+02 0.0033 23.0 4.4 40 46-85 13-53 (121)
251 PRK09240 thiH thiamine biosynt 23.6 6.4E+02 0.014 23.9 15.0 110 45-174 103-216 (371)
252 cd04734 OYE_like_3_FMN Old yel 23.6 6.1E+02 0.013 23.7 12.9 35 163-197 274-309 (343)
253 PRK14326 (dimethylallyl)adenos 23.5 7.1E+02 0.015 24.8 10.0 70 153-223 182-264 (502)
254 COG3693 XynA Beta-1,4-xylanase 23.4 26 0.00057 32.5 -0.1 27 157-183 201-228 (345)
255 COG1104 NifS Cysteine sulfinat 23.4 1.7E+02 0.0037 28.0 5.3 71 158-229 100-177 (386)
256 TIGR00355 purH phosphoribosyla 23.3 1.8E+02 0.004 28.9 5.6 76 48-136 10-99 (511)
257 KOG1196 Predicted NAD-dependen 23.3 1.4E+02 0.0031 27.6 4.6 20 159-178 291-310 (343)
258 PLN02428 lipoic acid synthase 23.3 6.4E+02 0.014 23.8 14.2 167 45-234 129-325 (349)
259 COG0820 Predicted Fe-S-cluster 23.3 4.2E+02 0.0091 25.1 7.8 117 92-224 98-238 (349)
260 PRK04820 rnpA ribonuclease P; 23.2 3.3E+02 0.0071 22.2 6.3 33 94-126 85-117 (145)
261 COG2185 Sbm Methylmalonyl-CoA 23.2 2.2E+02 0.0047 23.2 5.2 71 178-260 20-93 (143)
262 cd03325 D-galactonate_dehydrat 23.2 6.2E+02 0.013 23.6 14.8 148 47-230 123-285 (352)
263 PF00388 PI-PLC-X: Phosphatidy 23.1 55 0.0012 26.4 1.8 17 53-69 30-46 (146)
264 cd07938 DRE_TIM_HMGL 3-hydroxy 23.1 3E+02 0.0065 24.9 6.8 99 112-228 20-132 (274)
265 cd00959 DeoC 2-deoxyribose-5-p 23.0 2.9E+02 0.0062 23.6 6.4 71 47-126 129-202 (203)
266 PRK14476 nitrogenase molybdenu 22.9 6.6E+02 0.014 24.6 9.6 110 70-199 72-198 (455)
267 COG4077 Uncharacterized protei 22.8 1.3E+02 0.0027 24.2 3.6 84 95-197 34-117 (156)
268 PRK09485 mmuM homocysteine met 22.7 6E+02 0.013 23.3 20.9 213 47-293 44-302 (304)
269 COG0673 MviM Predicted dehydro 22.7 5.9E+02 0.013 23.2 10.2 99 166-273 20-143 (342)
270 PRK09776 putative diguanylate 22.6 7E+02 0.015 27.1 10.7 141 96-273 925-1077(1092)
271 COG0279 GmhA Phosphoheptose is 22.6 4.7E+02 0.01 22.0 8.8 116 49-193 28-155 (176)
272 TIGR01862 N2-ase-Ialpha nitrog 22.3 7.3E+02 0.016 24.1 9.8 146 69-232 96-271 (443)
273 PRK07003 DNA polymerase III su 22.3 3.3E+02 0.0071 28.9 7.4 93 109-225 100-197 (830)
274 PRK08446 coproporphyrinogen II 22.2 6.5E+02 0.014 23.5 9.6 108 174-292 51-173 (350)
275 PRK02083 imidazole glycerol ph 22.2 5.5E+02 0.012 22.6 11.1 34 163-196 186-220 (253)
276 cd00945 Aldolase_Class_I Class 22.1 4.5E+02 0.0097 21.6 7.6 78 48-130 64-147 (201)
277 PF01081 Aldolase: KDPG and KH 22.1 2.3E+02 0.0049 24.4 5.4 58 164-228 48-106 (196)
278 PRK08574 cystathionine gamma-s 21.8 6.5E+02 0.014 23.9 9.1 51 184-234 125-178 (385)
279 TIGR03126 one_C_fae formaldehy 21.8 1.2E+02 0.0027 25.0 3.5 53 71-124 77-143 (160)
280 cd00668 Ile_Leu_Val_MetRS_core 21.7 1.2E+02 0.0026 27.9 4.0 49 110-177 81-131 (312)
281 cd01320 ADA Adenosine deaminas 21.7 6.2E+02 0.014 23.1 19.5 125 159-305 172-303 (325)
282 TIGR01329 cysta_beta_ly_E cyst 21.5 4.7E+02 0.01 24.8 8.1 73 161-234 97-172 (378)
283 cd01948 EAL EAL domain. This d 21.3 5.1E+02 0.011 21.9 8.4 115 95-229 82-208 (240)
284 PF10668 Phage_terminase: Phag 21.3 90 0.0019 21.4 2.2 17 249-265 24-40 (60)
285 PRK00979 tetrahydromethanopter 21.2 5.4E+02 0.012 23.9 8.0 71 161-234 82-157 (308)
286 cd00248 Mth938-like Mth938-lik 21.2 2.8E+02 0.006 21.2 5.3 51 180-232 36-88 (109)
287 PF01408 GFO_IDH_MocA: Oxidore 21.2 2E+02 0.0043 21.7 4.6 61 166-228 54-118 (120)
288 TIGR01927 menC_gamma/gm+ o-suc 21.1 3E+02 0.0064 25.3 6.4 69 164-234 196-268 (307)
289 TIGR00089 RNA modification enz 21.1 7.5E+02 0.016 23.8 11.3 129 153-293 164-315 (429)
290 TIGR01860 VNFD nitrogenase van 21.0 5.9E+02 0.013 25.0 8.8 116 68-200 104-231 (461)
291 PF05913 DUF871: Bacterial pro 21.0 4.8E+02 0.01 24.7 7.9 199 47-292 12-235 (357)
292 PF05049 IIGP: Interferon-indu 20.9 2E+02 0.0043 27.6 5.2 73 74-168 129-215 (376)
293 COG2179 Predicted hydrolase of 20.7 4.3E+02 0.0094 22.2 6.5 39 159-198 48-86 (175)
294 PRK05301 pyrroloquinoline quin 20.7 7.1E+02 0.015 23.4 10.1 74 157-232 46-123 (378)
295 PRK14332 (dimethylallyl)adenos 20.6 8E+02 0.017 24.0 11.9 135 148-293 174-327 (449)
296 PLN02880 tyrosine decarboxylas 20.6 5.2E+02 0.011 25.6 8.4 60 157-234 221-280 (490)
297 cd04743 NPD_PKS 2-Nitropropane 20.6 5.3E+02 0.011 24.1 7.8 61 170-230 24-89 (320)
298 PRK08123 histidinol-phosphatas 20.6 6.2E+02 0.013 22.6 11.0 23 49-71 19-41 (270)
299 PF13407 Peripla_BP_4: Peripla 20.5 4.8E+02 0.01 22.4 7.6 53 110-184 13-65 (257)
300 PRK12331 oxaloacetate decarbox 20.4 8.2E+02 0.018 24.0 16.7 115 45-184 92-206 (448)
301 PRK07811 cystathionine gamma-s 20.4 7.4E+02 0.016 23.5 10.0 53 181-234 132-187 (388)
302 PF09012 FeoC: FeoC like trans 20.2 1.3E+02 0.0029 20.7 3.0 26 158-183 27-52 (69)
303 COG4464 CapC Capsular polysacc 20.0 3E+02 0.0064 24.3 5.6 29 44-72 15-43 (254)
304 PF01784 NIF3: NIF3 (NGG1p int 20.0 49 0.0011 29.3 1.0 67 13-86 158-235 (241)
No 1
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=6.5e-66 Score=459.26 Aligned_cols=267 Identities=41% Similarity=0.723 Sum_probs=246.5
Q ss_pred ccceEEcCCCCCCccCCcceeeCcccCccccccCCCChHHHHHHHHHHHHcCCCEeeCCCCcCCHHHHHHHHHHHHHcCC
Q 035739 11 NIPKLKLSSSSGHLNMPVIGLGCAVDKCLRCAVDKSDTDALKLVVLEAIKLGYRHFDTAAMYGTEKALGEAIAEALRLGL 90 (335)
Q Consensus 11 ~m~~~~lg~t~g~~~vs~lg~G~~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Ygse~~lG~~l~~~~~~g~ 90 (335)
.+++.+|++ | .+||.||||||+++. .+...+.+.+|++.|+|+||||..||||+.+|++|++. |+
T Consensus 2 ~~~~~~l~~--g-~~iP~iGlGt~~~~~---------~~~~~~av~~Al~~Gyr~IDTA~~YgnE~~VG~aI~~s---~v 66 (280)
T COG0656 2 MKTKVTLNN--G-VEIPAIGLGTWQIGD---------DEWAVRAVRAALELGYRLIDTAEIYGNEEEVGEAIKES---GV 66 (280)
T ss_pred CCceeecCC--C-CcccCcceEeeecCC---------chhHHHHHHHHHHhCcceEecHhHhcCHHHHHHHHHhc---CC
Confidence 466789999 7 899999999999873 23378999999999999999999999999999999985 88
Q ss_pred CCCCCceEEeeccCCCCCChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 035739 91 VSSREQLFITSKLWCQNAHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQ 170 (335)
Q Consensus 91 ~~~R~~~~i~tK~~~~~~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 170 (335)
+|+++||+||+|..+.+++.+.+++++||++||+||+|||+||||.+. . .....++|++|++++
T Consensus 67 --~ReelFittKvw~~~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~-~-------------~~~~~etw~alE~l~ 130 (280)
T COG0656 67 --PREELFITTKVWPSDLGYDETLKALEASLKRLGLDYVDLYLIHWPVPN-K-------------YVVIEETWKALEELV 130 (280)
T ss_pred --CHHHeEEEeecCCccCCcchHHHHHHHHHHHhCCCceeEEEECCCCCc-c-------------CccHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999652 1 111689999999999
Q ss_pred HcCCccEEEecCccHHHHHHHHHhcCCCCccccCCCCcccccHHHHHHHHHcCCeEEEeccCCCCCCcCCCCccCChHHH
Q 035739 171 MLGLTKSIGLSNFSRKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLENEAL 250 (335)
Q Consensus 171 ~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l 250 (335)
++||||+||||||+..+|+++++..++.|+++|++|||+.++.+++++|+++||.+++|+||+. |.. ++..+.+
T Consensus 131 ~~G~ir~IGVSNF~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~el~~~~~~~gI~v~AysPL~~-g~~-----l~~~~~l 204 (280)
T COG0656 131 DEGLIRAIGVSNFGVEHLEELLSLAKVKPAVNQIEYHPYLRQPELLPFCQRHGIAVEAYSPLAK-GGK-----LLDNPVL 204 (280)
T ss_pred hcCCccEEEeeCCCHHHHHHHHHhcCCCCceEEEEeccCCCcHHHHHHHHHcCCEEEEECCccc-ccc-----cccChHH
Confidence 9999999999999999999999999999999999999999999999999999999999999996 431 5677899
Q ss_pred HHHHHHhCCCHHHHHHHHHhhcCCEEEeCCCCHHHHHHhhccccccCCHHHHHHHhccCCCCcc
Q 035739 251 KEIAKARGKTVAQVSLRWIVEQGATVVIKSLNLERMKQNLGIFDWKLTDDDYDKINQIPQHRLI 314 (335)
Q Consensus 251 ~~la~~~g~s~~q~al~~~l~~~~~vi~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~~~~~ 314 (335)
.++|++||.|++|++|+|++++|+++||.+++++|+++|++++++.||++||++|+++......
T Consensus 205 ~~Ia~k~g~t~AQv~L~W~i~~gv~~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~~~~ 268 (280)
T COG0656 205 AEIAKKYGKTPAQVALRWHIQRGVIVIPKSTTPERIRENLAAFDFELSEEDMAAIDALDRGYGR 268 (280)
T ss_pred HHHHHHhCCCHHHHHHHHHHhCCcEEecCCCCHHHHHHHHhhhcCCCCHHHHHHHHhhccccCc
Confidence 9999999999999999999999999999999999999999999999999999999999887654
No 2
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=2.6e-64 Score=448.93 Aligned_cols=281 Identities=49% Similarity=0.813 Sum_probs=256.0
Q ss_pred eEEcCCCCCCccCCcceeeCcccCccccccCCCChHHHHHHHHHHHHcCCCEeeCCCCcCCHHHHHHHHHHHHHcCCCCC
Q 035739 14 KLKLSSSSGHLNMPVIGLGCAVDKCLRCAVDKSDTDALKLVVLEAIKLGYRHFDTAAMYGTEKALGEAIAEALRLGLVSS 93 (335)
Q Consensus 14 ~~~lg~t~g~~~vs~lg~G~~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Ygse~~lG~~l~~~~~~g~~~~ 93 (335)
+.+|.+ | .++|.||||||+. +..++.+.+..|++.|+||||||..|++|+.+|++|++.+++|.+ +
T Consensus 6 ~~~Ln~--G-~~mP~iGlGTw~~----------~~~~~~~aV~~Al~~GYRHIDtA~~Y~NE~evG~aik~~i~~~~v-~ 71 (300)
T KOG1577|consen 6 TVKLNN--G-FKMPIIGLGTWQS----------PPGQVAEAVKAAIKAGYRHIDTAHVYGNEKEVGEAIKELLAEGGV-K 71 (300)
T ss_pred eEeccC--C-CccceeeeEeccc----------ChhhHHHHHHHHHHhCcceeechhhhCChHHHHHHHHHHhhhCCc-c
Confidence 788999 9 9999999999994 567889999999999999999999999999999999999977655 9
Q ss_pred CCceEEeeccCCCCCChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCC---CCCCCCCCHHHHHHHHHHHH
Q 035739 94 REQLFITSKLWCQNAHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEP---KEDLLPMDYRGVWEAMEESQ 170 (335)
Q Consensus 94 R~~~~i~tK~~~~~~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~---~~~~~~~~~~~~~~~L~~l~ 170 (335)
|+++||+||+|+..+.++.+..++++||++||+||+|||++|||....+ ..+.. ...+...+..++|++||+++
T Consensus 72 RediFiTSKlw~~~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~---~~~~~~~~~~~~~~~~~~~tW~amE~~~ 148 (300)
T KOG1577|consen 72 REDIFITSKLWPTDHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKD---SFPKDENGKVNYDDVDRIETWKAMEKLV 148 (300)
T ss_pred hhhheeeeccCccccChhhHHHHHHHHHHHhChhhhheeeEecccccCC---CCCcccccccccccchHHHHHHHHHHHH
Confidence 9999999999998889999999999999999999999999999988643 11111 11123356899999999999
Q ss_pred HcCCccEEEecCccHHHHHHHHHhcCCCCccccCCCCcccccHHHHHHHHHcCCeEEEeccCCCCCCcCCCCccCChHHH
Q 035739 171 MLGLTKSIGLSNFSRKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLENEAL 250 (335)
Q Consensus 171 ~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l 250 (335)
+.|++|+||||||+..+|++++..++++|+++|++++|++++.+++++|+++||.|.||+||++.+. +. .++.++.+
T Consensus 149 ~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q~~L~~fCk~~~I~v~AYSpLg~~~~--~~-~ll~~~~l 225 (300)
T KOG1577|consen 149 DEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQQKKLVEFCKSKGIVVTAYSPLGSPGR--GS-DLLEDPVL 225 (300)
T ss_pred HcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCCcChHHHHHHHhhCCcEEEEecCCCCCCC--cc-ccccCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998333 12 67788999
Q ss_pred HHHHHHhCCCHHHHHHHHHhhcCCEEEeCCCCHHHHHHhhccccccCCHHHHHHHhccCCCCcc
Q 035739 251 KEIAKARGKTVAQVSLRWIVEQGATVVIKSLNLERMKQNLGIFDWKLTDDDYDKINQIPQHRLI 314 (335)
Q Consensus 251 ~~la~~~g~s~~q~al~~~l~~~~~vi~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~~~~~ 314 (335)
.++|++|+.||+|++|||.+++|++|||.++|++|++||++++++.||++||+.|+++..+.|.
T Consensus 226 ~~iA~K~~kt~aQIlLrw~~q~g~~vipKS~~~~Ri~eN~~vfdf~Lt~ed~~~i~~~~~~~r~ 289 (300)
T KOG1577|consen 226 KEIAKKYNKTPAQILLRWALQRGVSVIPKSSNPERIKENFKVFDFELTEEDMKKLDSLNSNERY 289 (300)
T ss_pred HHHHHHhCCCHHHHHHHHHHhCCcEEEeccCCHHHHHHHHhhccccCCHHHHHHHhhcccccee
Confidence 9999999999999999999999999999999999999999999999999999999998888775
No 3
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=2e-59 Score=432.98 Aligned_cols=272 Identities=32% Similarity=0.520 Sum_probs=241.2
Q ss_pred cceEEcCCCCCCccCCcceeeCcccCccccccCCCChHHHHHHHHHHHHcCCCEeeCCCCcC---CHHHHHHHHHHHHHc
Q 035739 12 IPKLKLSSSSGHLNMPVIGLGCAVDKCLRCAVDKSDTDALKLVVLEAIKLGYRHFDTAAMYG---TEKALGEAIAEALRL 88 (335)
Q Consensus 12 m~~~~lg~t~g~~~vs~lg~G~~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg---se~~lG~~l~~~~~~ 88 (335)
|++++||+| | ++||+||||||.+|+. ....+.+++.++|++|+++||||||||+.|| ||++||++|++.
T Consensus 1 m~~r~lG~~-g-l~vs~lglG~~~~g~~---~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~--- 72 (316)
T COG0667 1 MKYRRLGRS-G-LKVSPLGLGTMTLGGD---TDDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKER--- 72 (316)
T ss_pred CCceecCCC-C-ceecceeeeccccCCC---CCchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhcc---
Confidence 789999998 9 9999999999999852 2223455777899999999999999999999 899999999975
Q ss_pred CCCCCCCceEEeeccCCC----------CCChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCC
Q 035739 89 GLVSSREQLFITSKLWCQ----------NAHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMD 158 (335)
Q Consensus 89 g~~~~R~~~~i~tK~~~~----------~~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~ 158 (335)
+ .|++++|+||++.. +.++++|+++++.||+|||||||||||+|||+...|
T Consensus 73 ~---~Rd~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p---------------- 133 (316)
T COG0667 73 G---RRDKVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETP---------------- 133 (316)
T ss_pred C---CCCeEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCC----------------
Confidence 2 28999999999632 347999999999999999999999999999988544
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCccHHHHHHHHHhcCCCCccccCCCCccccc--HHHHHHHHHcCCeEEEeccCCCCC
Q 035739 159 YRGVWEAMEESQMLGLTKSIGLSNFSRKKIETILTFATIPPSINQVEMHPVWQQ--RKLIEFCKAKGIIVTAYSPLGAVG 236 (335)
Q Consensus 159 ~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~l~~~~~~gi~v~a~~pl~~~G 236 (335)
..+++.+|.+|+++||||++|+||++++++.++.+.. .+++++|.+||++.++ .+++++|+++||++++|+||++ |
T Consensus 134 ~~e~~~aL~~l~~~G~ir~iG~S~~~~~~i~~a~~~~-~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~-G 211 (316)
T COG0667 134 IEETLEALDELVREGKIRYIGVSNYSAEQIAEALAVA-APIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLAS-G 211 (316)
T ss_pred HHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhc-CCceeecccCccccccchhHHHHHHHHcCCeEEEecCccc-c
Confidence 8899999999999999999999999999999999976 6779999999999975 4589999999999999999998 9
Q ss_pred CcCCCCcc----------CC------------hHHHHHHHHHhCCCHHHHHHHHHhhcC--CEEEeCCCCHHHHHHhhcc
Q 035739 237 KIYGSNQV----------LE------------NEALKEIAKARGKTVAQVSLRWIVEQG--ATVVIKSLNLERMKQNLGI 292 (335)
Q Consensus 237 ~l~~~~~~----------~~------------~~~l~~la~~~g~s~~q~al~~~l~~~--~~vi~g~~~~~~l~enl~a 292 (335)
+|+++... .. ...++++|+++|+|++|+||+|++++| +++|+|+++++||++|+++
T Consensus 212 ~Ltgk~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A 291 (316)
T COG0667 212 LLTGKYLPGPEGSRASELPRFQRELTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAA 291 (316)
T ss_pred ccCCCcCCCcchhhccccccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHH
Confidence 99876332 00 134889999999999999999999997 7999999999999999999
Q ss_pred ccccCCHHHHHHHhccCCCC
Q 035739 293 FDWKLTDDDYDKINQIPQHR 312 (335)
Q Consensus 293 ~~~~L~~~~~~~l~~~~~~~ 312 (335)
++..|++++++.|++.....
T Consensus 292 ~~~~L~~~~~~~l~~~~~~~ 311 (316)
T COG0667 292 LDIKLSEEELAALDEISAEE 311 (316)
T ss_pred hcCCCCHHHHHHHHHHhhhc
Confidence 99999999999999876543
No 4
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=5.8e-59 Score=422.01 Aligned_cols=291 Identities=30% Similarity=0.460 Sum_probs=259.6
Q ss_pred CCCccccccccceEEcCCCCCCccCCcceeeCcccCccccccCCCChHHHHHHHHHHHHcCCCEeeCCCCcC---CHHHH
Q 035739 2 DSSTQSTVFNIPKLKLSSSSGHLNMPVIGLGCAVDKCLRCAVDKSDTDALKLVVLEAIKLGYRHFDTAAMYG---TEKAL 78 (335)
Q Consensus 2 ~~~~~~~~~~m~~~~lg~t~g~~~vs~lg~G~~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg---se~~l 78 (335)
.++..+....|+|++||++ | ++||+||||||.+.. +..+ .+++++.+++.+|+++|+|+||||++|| +|..+
T Consensus 2 ~~~~~~~~~~~~~~~lg~~-g-l~Vs~lglG~m~~~~--~~~~-~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~ll 76 (336)
T KOG1575|consen 2 PAPEPSTELGMLRRKLGNS-G-LKVSPLGLGCMGWTT--FGGQ-IDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELL 76 (336)
T ss_pred CcccccchhcceeeeccCC-C-ceecceeecceeeec--cccC-CCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHH
Confidence 4567778888999999997 8 999999999984432 3333 6899999999999999999999999999 89999
Q ss_pred HHHHHHHHHcCCCCCCCceEEeeccCC-------CCCChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCC
Q 035739 79 GEAIAEALRLGLVSSREQLFITSKLWC-------QNAHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPK 151 (335)
Q Consensus 79 G~~l~~~~~~g~~~~R~~~~i~tK~~~-------~~~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~ 151 (335)
|++|+++ +. +|++++|+||++. ...+...+...++.||++||++||||||+||+|...|
T Consensus 77 g~~i~~~---~~--~R~~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~p--------- 142 (336)
T KOG1575|consen 77 GEFIKSR---GW--RRDKVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVP--------- 142 (336)
T ss_pred HHHHHhc---CC--cCCcEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCC---------
Confidence 9999986 55 8999999999963 2346788999999999999999999999999998766
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCccEEEecCccHHHHHHHHHhcCCCCccccCCCCccccc---HHHHHHHHHcCCeEEE
Q 035739 152 EDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSRKKIETILTFATIPPSINQVEMHPVWQQ---RKLIEFCKAKGIIVTA 228 (335)
Q Consensus 152 ~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~~l~~~~~~gi~v~a 228 (335)
.++++++|.+++++||||+||+|+++++++.++...++++++++|++||++.|+ .++++.|++.||++++
T Consensus 143 -------iee~m~aL~~lve~Gki~yiGlSe~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ 215 (336)
T KOG1575|consen 143 -------IEETMRALTDLVEQGKIRYWGLSEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIA 215 (336)
T ss_pred -------HHHHHHHHHHHHhcCceEEEEeccCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEE
Confidence 889999999999999999999999999999999999988899999999999987 4599999999999999
Q ss_pred eccCCCCCCcCCCCcc-----------------CC----------hHHHHHHHHHhCCCHHHHHHHHHhhcC--CEEEeC
Q 035739 229 YSPLGAVGKIYGSNQV-----------------LE----------NEALKEIAKARGKTVAQVSLRWIVEQG--ATVVIK 279 (335)
Q Consensus 229 ~~pl~~~G~l~~~~~~-----------------~~----------~~~l~~la~~~g~s~~q~al~~~l~~~--~~vi~g 279 (335)
|+||++ |+|+++... .. .+.+.++|+++|+|++|+||+|+++++ ++||||
T Consensus 216 ysPL~~-G~Ltgk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG 294 (336)
T KOG1575|consen 216 WSPLGR-GLLTGKYKLGEDSRNGDKRFQFLGLSPQTEEGDKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPG 294 (336)
T ss_pred eccccc-ceeccCcccccccccccccccccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCC
Confidence 999998 999865211 00 145889999999999999999999998 899999
Q ss_pred CCCHHHHHHhhccccccCCHHHHHHHhccCCCCccCCccc
Q 035739 280 SLNLERMKQNLGIFDWKLTDDDYDKINQIPQHRLIPSDFW 319 (335)
Q Consensus 280 ~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~~~~~~~~~~ 319 (335)
+++.+|++||++|++..|+++++..|+++.......+.++
T Consensus 295 ~s~ve~l~eni~Al~~~Lt~e~~~~l~~~~~~~~~~~~~~ 334 (336)
T KOG1575|consen 295 ASKIEQLKENIGALSVKLTPEEIKELEEIIDKILGFGPRS 334 (336)
T ss_pred CCcHHHHHHHHhhhhccCCHHHHHHHHHhhccccCcCCCC
Confidence 9999999999999999999999999999988877666544
No 5
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=1.9e-57 Score=412.48 Aligned_cols=254 Identities=36% Similarity=0.608 Sum_probs=229.8
Q ss_pred ccCCcceeeCcccCccccccCCCChHHHHHHHHHHHHcCCCEeeCCCCcCCHHHHHHHHHHHHHcCCCCCCCceEEeecc
Q 035739 24 LNMPVIGLGCAVDKCLRCAVDKSDTDALKLVVLEAIKLGYRHFDTAAMYGTEKALGEAIAEALRLGLVSSREQLFITSKL 103 (335)
Q Consensus 24 ~~vs~lg~G~~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~~~i~tK~ 103 (335)
.+||+||||||+++ .+++.++++.|++.|||+||||+.||+|..||++|++. |+ +|+++||+||+
T Consensus 1 ~~vs~lglGt~~~~----------~~~~~~~i~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~---~~--~R~~v~i~TK~ 65 (267)
T PRK11172 1 MSIPAFGLGTFRLK----------DQVVIDSVKTALELGYRAIDTAQIYDNEAAVGQAIAES---GV--PRDELFITTKI 65 (267)
T ss_pred CCCCCEeeEccccC----------hHHHHHHHHHHHHcCCCEEEccchhCCHHHHHHHHHHc---CC--ChhHeEEEEEe
Confidence 36899999999874 36788999999999999999999999999999999864 65 79999999999
Q ss_pred CCCCCChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCc
Q 035739 104 WCQNAHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNF 183 (335)
Q Consensus 104 ~~~~~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~ 183 (335)
+....+++.+++++++||+|||+||||+|++|||++.. .....++|++|++|+++||||+||||||
T Consensus 66 ~~~~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~--------------~~~~~~~~~~l~~l~~~Gkir~iGvSn~ 131 (267)
T PRK11172 66 WIDNLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPND--------------EVSVEEFMQALLEAKKQGLTREIGISNF 131 (267)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCC--------------CCCHHHHHHHHHHHHHCCCCCEEEEccC
Confidence 87667889999999999999999999999999986421 1236789999999999999999999999
Q ss_pred cHHHHHHHHHhcCC-CCccccCCCCcccccHHHHHHHHHcCCeEEEeccCCCCCCcCCCCccCChHHHHHHHHHhCCCHH
Q 035739 184 SRKKIETILTFATI-PPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLENEALKEIAKARGKTVA 262 (335)
Q Consensus 184 ~~~~l~~~~~~~~~-~~~~~q~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~g~s~~ 262 (335)
+.++++++++..+. ++.++|++||++.++.+++++|+++||++++|+||++ |.+. ..+.++++|+++|+|++
T Consensus 132 ~~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~ll~~~~~~gi~v~a~spl~~-G~~~------~~~~l~~~a~~~~~s~a 204 (267)
T PRK11172 132 TIALMKQAIAAVGAENIATNQIELSPYLQNRKVVAFAKEHGIHVTSYMTLAY-GKVL------KDPVIARIAAKHNATPA 204 (267)
T ss_pred CHHHHHHHHHhcCCCCCeEEeeecCCCCCcHHHHHHHHHCCCEEEEECCCCC-Cccc------CCHHHHHHHHHhCCCHH
Confidence 99999999887654 6789999999999988999999999999999999997 7543 23679999999999999
Q ss_pred HHHHHHHhhcCCEEEeCCCCHHHHHHhhccccccCCHHHHHHHhccCCCCc
Q 035739 263 QVSLRWIVEQGATVVIKSLNLERMKQNLGIFDWKLTDDDYDKINQIPQHRL 313 (335)
Q Consensus 263 q~al~~~l~~~~~vi~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~~~~ 313 (335)
|+||+|++++++++|+|+++++|+++|+++++++|+++++++|+++.++.+
T Consensus 205 qval~w~l~~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~i~~~~~~~~ 255 (267)
T PRK11172 205 QVILAWAMQLGYSVIPSSTKRENLASNLLAQDLQLDAEDMAAIAALDRNGR 255 (267)
T ss_pred HHHHHHHHhCCCEeecCCCCHHHHHHHHhhcCCCcCHHHHHHHhhhccCCc
Confidence 999999999999999999999999999999999999999999999987644
No 6
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=2.6e-56 Score=419.19 Aligned_cols=273 Identities=23% Similarity=0.412 Sum_probs=234.1
Q ss_pred cccceEEcCCCCCCccCCcceeeCcc-cCccccccCCCChHHHHHHHHHHHHcCCCEeeCCCCcC-----CHHHHHHHHH
Q 035739 10 FNIPKLKLSSSSGHLNMPVIGLGCAV-DKCLRCAVDKSDTDALKLVVLEAIKLGYRHFDTAAMYG-----TEKALGEAIA 83 (335)
Q Consensus 10 ~~m~~~~lg~t~g~~~vs~lg~G~~~-~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg-----se~~lG~~l~ 83 (335)
..|+|++||+| | ++||+||||||. +|. ..+.+++.++|++|+++|||+||||+.|| +|+.||++|+
T Consensus 11 ~~m~~r~lg~t-g-~~vs~lglG~~~~~g~------~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~ 82 (346)
T PRK09912 11 GQMQYRYCGKS-G-LRLPALSLGLWHNFGH------VNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLR 82 (346)
T ss_pred CCcceeecCCC-C-cccccccccCccccCC------CCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHH
Confidence 45899999999 9 999999999996 431 22557788999999999999999999998 6999999998
Q ss_pred HHHHcCCCCCCCceEEeeccCC--------CCCChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCC
Q 035739 84 EALRLGLVSSREQLFITSKLWC--------QNAHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLL 155 (335)
Q Consensus 84 ~~~~~g~~~~R~~~~i~tK~~~--------~~~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~ 155 (335)
+.. +. .|++++|+||++. ...+++.+++++++||++||+||||+|++|||+...+
T Consensus 83 ~~~--~~--~Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~------------- 145 (346)
T PRK09912 83 EDF--AA--YRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTP------------- 145 (346)
T ss_pred hcc--cC--CCCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCC-------------
Confidence 521 12 5999999999752 1246889999999999999999999999999975332
Q ss_pred CCCHHHHHHHHHHHHHcCCccEEEecCccHHHHHHHHH---hcCCCCccccCCCCccccc---HHHHHHHHHcCCeEEEe
Q 035739 156 PMDYRGVWEAMEESQMLGLTKSIGLSNFSRKKIETILT---FATIPPSINQVEMHPVWQQ---RKLIEFCKAKGIIVTAY 229 (335)
Q Consensus 156 ~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~---~~~~~~~~~q~~~~~~~~~---~~~l~~~~~~gi~v~a~ 229 (335)
.+++|++|++|+++||||+||||||++++++++.+ ..++++.++|++||++++. .+++++|+++||++++|
T Consensus 146 ---~~e~~~al~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~ 222 (346)
T PRK09912 146 ---MEETASALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAF 222 (346)
T ss_pred ---HHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEe
Confidence 78999999999999999999999999998876654 3456788999999999874 46999999999999999
Q ss_pred ccCCCCCCcCCCCc--------c--------------CC------hHHHHHHHHHhCCCHHHHHHHHHhhcC--CEEEeC
Q 035739 230 SPLGAVGKIYGSNQ--------V--------------LE------NEALKEIAKARGKTVAQVSLRWIVEQG--ATVVIK 279 (335)
Q Consensus 230 ~pl~~~G~l~~~~~--------~--------------~~------~~~l~~la~~~g~s~~q~al~~~l~~~--~~vi~g 279 (335)
+||++ |+|+++.. . .. .+.++++|+++|+|++|+||+|++++| +++|+|
T Consensus 223 spl~~-G~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G 301 (346)
T PRK09912 223 TPLAQ-GLLTGKYLNGIPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIG 301 (346)
T ss_pred hhhcC-ccccCCCCCCCCCCccccccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeC
Confidence 99998 99876310 0 00 156788999999999999999999998 789999
Q ss_pred CCCHHHHHHhhcccc-ccCCHHHHHHHhccCCC
Q 035739 280 SLNLERMKQNLGIFD-WKLTDDDYDKINQIPQH 311 (335)
Q Consensus 280 ~~~~~~l~enl~a~~-~~L~~~~~~~l~~~~~~ 311 (335)
+++++||++|++++. ++|++++++.|+++.++
T Consensus 302 ~~~~~ql~en~~a~~~~~L~~e~~~~l~~~~~~ 334 (346)
T PRK09912 302 ASRAEQLEENVQALNNLTFSTEELAQIDQHIAD 334 (346)
T ss_pred CCCHHHHHHHHhhhcCCCCCHHHHHHHHHhhCc
Confidence 999999999999984 79999999999998644
No 7
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=2.8e-56 Score=419.38 Aligned_cols=284 Identities=27% Similarity=0.382 Sum_probs=236.0
Q ss_pred cceEEcCCCCCCccCCcceeeCcccCccccccCCCChHHHHHHHHHHHHcCCCEeeCCCCcC----------CHHHHHHH
Q 035739 12 IPKLKLSSSSGHLNMPVIGLGCAVDKCLRCAVDKSDTDALKLVVLEAIKLGYRHFDTAAMYG----------TEKALGEA 81 (335)
Q Consensus 12 m~~~~lg~t~g~~~vs~lg~G~~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg----------se~~lG~~ 81 (335)
|+|++||+| | ++||+||||||.+|. ..+.+++.++|+.|+++|||+||||+.|| +|..||++
T Consensus 1 m~~r~lg~t-~-~~vs~iglGt~~~g~------~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~a 72 (346)
T PRK10625 1 MQYHRIPHS-S-LEVSTLGLGTMTFGE------QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNW 72 (346)
T ss_pred CCceecCCC-C-CccccEeEeccccCC------CCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHH
Confidence 789999999 9 999999999999874 23678899999999999999999999996 89999999
Q ss_pred HHHHHHcCCCCCCCceEEeeccCCC------------CCChhhHHHHHHHHHHHhCCCccceEEeecCCCCCC--CCCCC
Q 035739 82 IAEALRLGLVSSREQLFITSKLWCQ------------NAHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKP--GELGF 147 (335)
Q Consensus 82 l~~~~~~g~~~~R~~~~i~tK~~~~------------~~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~--~~~~~ 147 (335)
|+.. + .|++++|+||++.. +.+++.+++++++||++||+||||||++|||+.... +...+
T Consensus 73 L~~~---~---~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~ 146 (346)
T PRK10625 73 LAKR---G---SREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGY 146 (346)
T ss_pred Hhhc---C---CcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCccccccccccc
Confidence 9863 3 59999999998531 356899999999999999999999999999965211 00000
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCccHHHHHHHHHhc---C-CCCccccCCCCccccc--HHHHHHHHH
Q 035739 148 PEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSRKKIETILTFA---T-IPPSINQVEMHPVWQQ--RKLIEFCKA 221 (335)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~---~-~~~~~~q~~~~~~~~~--~~~l~~~~~ 221 (335)
....+ .......++|++|++|+++||||+||+|||+.+++.+++... . ..+.++|++||+++++ .+++++|++
T Consensus 147 ~~~~~-~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~ 225 (346)
T PRK10625 147 SWTDS-APAVSLLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQY 225 (346)
T ss_pred ccccc-cCCCCHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHH
Confidence 00000 001247899999999999999999999999999988776532 2 3467899999999876 579999999
Q ss_pred cCCeEEEeccCCCCCCcCCCCc-----------cC-------------ChHHHHHHHHHhCCCHHHHHHHHHhhcC--CE
Q 035739 222 KGIIVTAYSPLGAVGKIYGSNQ-----------VL-------------ENEALKEIAKARGKTVAQVSLRWIVEQG--AT 275 (335)
Q Consensus 222 ~gi~v~a~~pl~~~G~l~~~~~-----------~~-------------~~~~l~~la~~~g~s~~q~al~~~l~~~--~~ 275 (335)
+||++++|+||++ |+|+++.. .. ..+.++++|+++|+|++|+||+|++++| ++
T Consensus 226 ~gi~via~spL~~-G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~ 304 (346)
T PRK10625 226 EGVELLAYSCLAF-GTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVAS 304 (346)
T ss_pred cCCeEEEeccccC-eeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCee
Confidence 9999999999998 98875310 00 0256889999999999999999999998 56
Q ss_pred EEeCCCCHHHHHHhhccccccCCHHHHHHHhccCCC
Q 035739 276 VVIKSLNLERMKQNLGIFDWKLTDDDYDKINQIPQH 311 (335)
Q Consensus 276 vi~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~~ 311 (335)
+|+|+++++|+++|+++++++|++++++.|+++...
T Consensus 305 ~I~G~~~~~~l~en~~a~~~~L~~~~~~~l~~~~~~ 340 (346)
T PRK10625 305 TLLGATTMEQLKTNIESLHLTLSEEVLAEIEAVHQV 340 (346)
T ss_pred EEeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHHhh
Confidence 899999999999999999999999999999998643
No 8
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=2.7e-56 Score=414.71 Aligned_cols=266 Identities=29% Similarity=0.446 Sum_probs=230.3
Q ss_pred eEEcCCCCCCccCCcceeeCcccCccccccCCCChHHHHHHHHHHHHcCCCEeeCCCCcC---CHHHHHHHHHHHHHcCC
Q 035739 14 KLKLSSSSGHLNMPVIGLGCAVDKCLRCAVDKSDTDALKLVVLEAIKLGYRHFDTAAMYG---TEKALGEAIAEALRLGL 90 (335)
Q Consensus 14 ~~~lg~t~g~~~vs~lg~G~~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg---se~~lG~~l~~~~~~g~ 90 (335)
||+||+| | ++||+||||||.+.+ +..+.+++.++|+.|+++|||+||||+.|| ||+.||++|++. ++
T Consensus 1 ~r~lg~t-g-~~vs~lglGt~~~~g-----~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~---~~ 70 (317)
T TIGR01293 1 YRNLGKS-G-LRVSCLGLGTWVTFG-----GQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKK---GW 70 (317)
T ss_pred CcccCCC-C-CeecceeecCCccCC-----CCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhc---CC
Confidence 5789998 9 999999999997421 134678899999999999999999999998 899999999863 44
Q ss_pred CCCCCceEEeeccCCC-------CCChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q 035739 91 VSSREQLFITSKLWCQ-------NAHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVW 163 (335)
Q Consensus 91 ~~~R~~~~i~tK~~~~-------~~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (335)
.|++++|+||++.. +.+++.+++++++||++||+||||+|++|||+...+ .+++|
T Consensus 71 --~R~~~~iaTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~----------------~~e~~ 132 (317)
T TIGR01293 71 --RRSSYVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTP----------------MEETV 132 (317)
T ss_pred --CcccEEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCC----------------HHHHH
Confidence 69999999998421 356899999999999999999999999999975332 78999
Q ss_pred HHHHHHHHcCCccEEEecCccHHHHHHHHHhcC----CCCccccCCCCccccc---HHHHHHHHHcCCeEEEeccCCCCC
Q 035739 164 EAMEESQMLGLTKSIGLSNFSRKKIETILTFAT----IPPSINQVEMHPVWQQ---RKLIEFCKAKGIIVTAYSPLGAVG 236 (335)
Q Consensus 164 ~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~----~~~~~~q~~~~~~~~~---~~~l~~~~~~gi~v~a~~pl~~~G 236 (335)
++|++|+++||||+||+|||+.+++.++..... ++++++|++||++.++ ..++++|+++||++++|+||++ |
T Consensus 133 ~aL~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~-G 211 (317)
T TIGR01293 133 RAMTYVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLAC-G 211 (317)
T ss_pred HHHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccc-c
Confidence 999999999999999999999999888755432 5788999999999885 3689999999999999999998 9
Q ss_pred CcCCCCcc---------------C------C--------hHHHHHHHHHhCCCHHHHHHHHHhhcC--CEEEeCCCCHHH
Q 035739 237 KIYGSNQV---------------L------E--------NEALKEIAKARGKTVAQVSLRWIVEQG--ATVVIKSLNLER 285 (335)
Q Consensus 237 ~l~~~~~~---------------~------~--------~~~l~~la~~~g~s~~q~al~~~l~~~--~~vi~g~~~~~~ 285 (335)
+|+++... . . .+.++++|+++|+|++|+|++|++++| +++|+|+++++|
T Consensus 212 ~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~q 291 (317)
T TIGR01293 212 LVSGKYDSGIPPYSRATLKGYQWLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQ 291 (317)
T ss_pred ccCCCCCCCCCCcccccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHH
Confidence 88753210 0 0 146888999999999999999999997 579999999999
Q ss_pred HHHhhccccc--cCCHHHHHHHhcc
Q 035739 286 MKQNLGIFDW--KLTDDDYDKINQI 308 (335)
Q Consensus 286 l~enl~a~~~--~L~~~~~~~l~~~ 308 (335)
+++|+++++. +|++++++.|+++
T Consensus 292 l~en~~a~~~~~~Ls~e~~~~l~~~ 316 (317)
T TIGR01293 292 LMENLGSLQVLPKLSSSIIHEIDSI 316 (317)
T ss_pred HHHHHHHhhccCCCCHHHHHHHHhh
Confidence 9999999987 9999999999875
No 9
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=8.7e-55 Score=396.40 Aligned_cols=261 Identities=36% Similarity=0.686 Sum_probs=233.9
Q ss_pred ceEEcCCCCCCccCCcceeeCcccCccccccCCCChHHHHHHHHHHHHcCCCEeeCCCCcCCHHHHHHHHHHHHHcCCCC
Q 035739 13 PKLKLSSSSGHLNMPVIGLGCAVDKCLRCAVDKSDTDALKLVVLEAIKLGYRHFDTAAMYGTEKALGEAIAEALRLGLVS 92 (335)
Q Consensus 13 ~~~~lg~t~g~~~vs~lg~G~~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Ygse~~lG~~l~~~~~~g~~~ 92 (335)
++.+|.+ | +.||+||||||++ +.+++.++|++|++.|||+||||+.||+|+.+|++|++. ++
T Consensus 5 ~~~~l~~--g-~~v~~lglG~~~~----------~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~---~~-- 66 (275)
T PRK11565 5 TVIKLQD--G-NVMPQLGLGVWQA----------SNEEVITAIHKALEVGYRSIDTAAIYKNEEGVGKALKEA---SV-- 66 (275)
T ss_pred ceEEcCC--C-CccCCcceECccC----------CHHHHHHHHHHHHHhCCCEEEchhhhCCHHHHHHHHHHc---CC--
Confidence 4566754 9 9999999999986 347789999999999999999999999999999999974 55
Q ss_pred CCCceEEeeccCCCCCChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q 035739 93 SREQLFITSKLWCQNAHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQML 172 (335)
Q Consensus 93 ~R~~~~i~tK~~~~~~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~ 172 (335)
+|++++|+||++.. +++.+++++++||++||+||||+|++|+|+... ....++|++|++|+++
T Consensus 67 ~R~~~~i~tK~~~~--~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~---------------~~~~~~~~~l~~l~~~ 129 (275)
T PRK11565 67 AREELFITTKLWND--DHKRPREALEESLKKLQLDYVDLYLMHWPVPAI---------------DHYVEAWKGMIELQKE 129 (275)
T ss_pred CHHHEEEEEEecCc--chHHHHHHHHHHHHHhCCCceEEEEecCCCCCc---------------CcHHHHHHHHHHHHHc
Confidence 79999999999743 468999999999999999999999999996521 1267999999999999
Q ss_pred CCccEEEecCccHHHHHHHHHhcCCCCccccCCCCcccccHHHHHHHHHcCCeEEEeccCCCCCCcCCCCccCChHHHHH
Q 035739 173 GLTKSIGLSNFSRKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLENEALKE 252 (335)
Q Consensus 173 Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~ 252 (335)
|+||+||||||++++++++++..++.|.++|++|+++.++.+++++|+++||++++|+|+++ |.. .....+.+.+
T Consensus 130 G~ir~iGvSn~~~~~l~~~~~~~~v~~~~~Q~~~~~~~~~~~~~~~~~~~~i~~~a~spl~~-G~~----~~~~~~~l~~ 204 (275)
T PRK11565 130 GLIKSIGVCNFQIHHLQRLIDETGVTPVINQIELHPLMQQRQLHAWNATHKIQTESWSPLAQ-GGK----GVFDQKVIRD 204 (275)
T ss_pred CCeeEEeeccCCHHHHHHHHHhCCCCceeeeeecCCccchHHHHHHHHHCCCEEEEEccCCC-CCc----ccccCHHHHH
Confidence 99999999999999999999878788999999999999888999999999999999999986 531 1234578999
Q ss_pred HHHHhCCCHHHHHHHHHhhcCCEEEeCCCCHHHHHHhhccccccCCHHHHHHHhccCCCCc
Q 035739 253 IAKARGKTVAQVSLRWIVEQGATVVIKSLNLERMKQNLGIFDWKLTDDDYDKINQIPQHRL 313 (335)
Q Consensus 253 la~~~g~s~~q~al~~~l~~~~~vi~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~~~~ 313 (335)
+|+++|+|++|+||+|+++++.++|+|+++++|+++|+++++++|+++++++|+++..+.+
T Consensus 205 ia~~~g~s~aq~aL~w~l~~~~~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~~~ 265 (275)
T PRK11565 205 LADKYGKTPAQIVIRWHLDSGLVVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQGKR 265 (275)
T ss_pred HHHHhCCCHHHHHHHHHHcCCCEeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhhcccCC
Confidence 9999999999999999999998899999999999999999999999999999999976554
No 10
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=1.2e-54 Score=403.26 Aligned_cols=274 Identities=20% Similarity=0.312 Sum_probs=231.9
Q ss_pred eEEcCCCCCCccCCcceeeCcccCccccccCCCChHHHHHHHHHHHHcCCCEeeCCCCcC---CHHHHHHHHHHHHHcCC
Q 035739 14 KLKLSSSSGHLNMPVIGLGCAVDKCLRCAVDKSDTDALKLVVLEAIKLGYRHFDTAAMYG---TEKALGEAIAEALRLGL 90 (335)
Q Consensus 14 ~~~lg~t~g~~~vs~lg~G~~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg---se~~lG~~l~~~~~~g~ 90 (335)
||+||+| | ++||.||||||++|.. ++..+.+++.++|++|+++|||+||||+.|| +|..+|++|++. ++
T Consensus 1 ~r~lg~t-~-~~vs~lglG~~~~g~~---~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~---~~ 72 (314)
T PLN02587 1 LRELGST-G-LKVSSVGFGASPLGSV---FGPVSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKAL---GI 72 (314)
T ss_pred CCcCCCC-C-CcccCcccccccccCC---CCCCCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhC---CC
Confidence 6889999 9 9999999999999752 2345778999999999999999999999997 699999999864 44
Q ss_pred CCCCCceEEeeccCC----CCCChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q 035739 91 VSSREQLFITSKLWC----QNAHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAM 166 (335)
Q Consensus 91 ~~~R~~~~i~tK~~~----~~~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 166 (335)
.|++++|+||++. .+.+++.+++++++||++||+||||+|+||+|+...+ .....++|++|
T Consensus 73 --~R~~v~I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~-------------~~~~~~~~~~l 137 (314)
T PLN02587 73 --PREKYVVSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSL-------------DQIVNETIPAL 137 (314)
T ss_pred --CcceEEEEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcch-------------hhhHHHHHHHH
Confidence 7999999999974 2467899999999999999999999999999964211 12256899999
Q ss_pred HHHHHcCCccEEEecCccHHHHHHHHHhcC---CCCccccCCCCccccc-HHHHHHHHHcCCeEEEeccCCCCCCcCCCC
Q 035739 167 EESQMLGLTKSIGLSNFSRKKIETILTFAT---IPPSINQVEMHPVWQQ-RKLIEFCKAKGIIVTAYSPLGAVGKIYGSN 242 (335)
Q Consensus 167 ~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~---~~~~~~q~~~~~~~~~-~~~l~~~~~~gi~v~a~~pl~~~G~l~~~~ 242 (335)
++|+++||||+||+|||+++++..+.+... +.+.++|+.|++.++. .+++++|+++||++++|+||++ |+|+++.
T Consensus 138 ~~l~~~Gkir~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~gi~v~a~spl~~-G~L~~~~ 216 (314)
T PLN02587 138 QKLKESGKVRFIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSLEDLLPYLKSKGVGVISASPLAM-GLLTENG 216 (314)
T ss_pred HHHHHCCCeEEEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhHHHHHHHHHHcCceEEEechhhc-cccCCCC
Confidence 999999999999999999998887766432 3445568888887654 5899999999999999999998 9987642
Q ss_pred ccC---C-------hHHHHHHHHHhCCCHHHHHHHHHhhcC--CEEEeCCCCHHHHHHhhcccc----ccCCHHHHHHHh
Q 035739 243 QVL---E-------NEALKEIAKARGKTVAQVSLRWIVEQG--ATVVIKSLNLERMKQNLGIFD----WKLTDDDYDKIN 306 (335)
Q Consensus 243 ~~~---~-------~~~l~~la~~~g~s~~q~al~~~l~~~--~~vi~g~~~~~~l~enl~a~~----~~L~~~~~~~l~ 306 (335)
... . .+.++++|+++++|++|+||+|++++| +++|+|+++++|+++|++++. .+|+++++++|+
T Consensus 217 ~~~~~~~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~~~l~ 296 (314)
T PLN02587 217 PPEWHPAPPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELLSEVE 296 (314)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHHHHHH
Confidence 110 0 134678999999999999999999998 679999999999999999976 379999999999
Q ss_pred ccCCC
Q 035739 307 QIPQH 311 (335)
Q Consensus 307 ~~~~~ 311 (335)
++...
T Consensus 297 ~~~~~ 301 (314)
T PLN02587 297 AILAP 301 (314)
T ss_pred Hhhcc
Confidence 87653
No 11
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=9.8e-54 Score=392.14 Aligned_cols=266 Identities=37% Similarity=0.594 Sum_probs=238.3
Q ss_pred eEEcCCCCCCccCCcceeeCcccCccccccCCCChHHHHHHHHHHHHcCCCEeeCCCCcC---CHHHHHHHHHHHHHcCC
Q 035739 14 KLKLSSSSGHLNMPVIGLGCAVDKCLRCAVDKSDTDALKLVVLEAIKLGYRHFDTAAMYG---TEKALGEAIAEALRLGL 90 (335)
Q Consensus 14 ~~~lg~t~g~~~vs~lg~G~~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg---se~~lG~~l~~~~~~g~ 90 (335)
+++||+| | ++||+|||||+.++..+ .+.+++.++++.|++.|||+||||+.|| +|+.+|++|++. +
T Consensus 1 ~r~lg~t-g-~~vs~lg~G~~~~~~~~-----~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~---~- 69 (285)
T cd06660 1 YRTLGKT-G-LKVSRLGLGTWQLGGGY-----VDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKER---G- 69 (285)
T ss_pred CcccCCC-C-ceecCcceeccccCCCC-----CCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhcc---C-
Confidence 5789988 9 99999999999987421 4678999999999999999999999999 899999999964 1
Q ss_pred CCCCCceEEeeccCCCC-----CChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q 035739 91 VSSREQLFITSKLWCQN-----AHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEA 165 (335)
Q Consensus 91 ~~~R~~~~i~tK~~~~~-----~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (335)
.|++++|+||++... .+++.+++++++||++||++|||+|+||+|+... ....++|++
T Consensus 70 --~R~~~~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~---------------~~~~~~~~~ 132 (285)
T cd06660 70 --PREEVFIATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDT---------------PDIEETLRA 132 (285)
T ss_pred --CcCcEEEEeeecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCC---------------CCHHHHHHH
Confidence 399999999998653 5799999999999999999999999999996532 137899999
Q ss_pred HHHHHHcCCccEEEecCccHHHHHHHHHhcCCCCccccCCCCcccccH--HHHHHHHHcCCeEEEeccCCCCCCcCCCCc
Q 035739 166 MEESQMLGLTKSIGLSNFSRKKIETILTFATIPPSINQVEMHPVWQQR--KLIEFCKAKGIIVTAYSPLGAVGKIYGSNQ 243 (335)
Q Consensus 166 L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~--~~l~~~~~~gi~v~a~~pl~~~G~l~~~~~ 243 (335)
|++++++|+||+||||+|+.+.+.++++.+..+|+++|++||++++.. +++++|+++||++++|+||++ |.+++...
T Consensus 133 l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~-g~l~~~~~ 211 (285)
T cd06660 133 LEELVKEGKIRAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAG-GLLTGKYL 211 (285)
T ss_pred HHHHHHcCCccEEEeeCCCHHHHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccC-ceecCCCC
Confidence 999999999999999999999999999987788999999999999985 499999999999999999998 88865433
Q ss_pred cCC-------hHHHHHHHHHhCCCHHHHHHHHHhhcC--CEEEeCCCCHHHHHHhhccccccCCHHHHHHHhcc
Q 035739 244 VLE-------NEALKEIAKARGKTVAQVSLRWIVEQG--ATVVIKSLNLERMKQNLGIFDWKLTDDDYDKINQI 308 (335)
Q Consensus 244 ~~~-------~~~l~~la~~~g~s~~q~al~~~l~~~--~~vi~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~ 308 (335)
... ...+..++++++++++|+|++|++++| +++|+|+++++|+++|+++...+|++++++.|+++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~~ 285 (285)
T cd06660 212 PGAPPPEGDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDAL 285 (285)
T ss_pred CCCCCChhhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhhC
Confidence 221 367889999999999999999999996 89999999999999999999899999999999863
No 12
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=3.8e-52 Score=382.13 Aligned_cols=265 Identities=23% Similarity=0.328 Sum_probs=224.2
Q ss_pred eEEcCCCCCCccCCcceeeCcccCccccccCCCChHHHHHHHHHHHHcCCCEeeCCCCcC---CHHHHHHHHHHHHHcCC
Q 035739 14 KLKLSSSSGHLNMPVIGLGCAVDKCLRCAVDKSDTDALKLVVLEAIKLGYRHFDTAAMYG---TEKALGEAIAEALRLGL 90 (335)
Q Consensus 14 ~~~lg~t~g~~~vs~lg~G~~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg---se~~lG~~l~~~~~~g~ 90 (335)
+++|+ | ++||+||||||+++.........+.+++.++|+.|+++|||+||||+.|| +|+.+|++++.
T Consensus 9 ~~~l~---g-~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~------ 78 (290)
T PRK10376 9 TFTLG---G-RSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP------ 78 (290)
T ss_pred ceecC---C-eeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc------
Confidence 34554 5 99999999999987421111233678899999999999999999999998 68999999973
Q ss_pred CCCCCceEEeeccCC---------CCCChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHH
Q 035739 91 VSSREQLFITSKLWC---------QNAHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRG 161 (335)
Q Consensus 91 ~~~R~~~~i~tK~~~---------~~~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~ 161 (335)
.|++++|+||++. ...+++.+++++++||++||+||||+|++|++..... | . .....+
T Consensus 79 --~R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~-----p--~----~~~~~~ 145 (290)
T PRK10376 79 --YPDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHG-----P--A----EGSIEE 145 (290)
T ss_pred --CCCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCC-----C--C----CCCHHH
Confidence 6999999999842 3456899999999999999999999999998632110 0 0 123778
Q ss_pred HHHHHHHHHHcCCccEEEecCccHHHHHHHHHhcCCCCccccCCCCccccc-HHHHHHHHHcCCeEEEeccCCCCCCcCC
Q 035739 162 VWEAMEESQMLGLTKSIGLSNFSRKKIETILTFATIPPSINQVEMHPVWQQ-RKLIEFCKAKGIIVTAYSPLGAVGKIYG 240 (335)
Q Consensus 162 ~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~~l~~~~~~gi~v~a~~pl~~~G~l~~ 240 (335)
+|++|++|+++||||+||||||+.+++.++++... +.++|++||++.+. .+++++|+++||++++|+||++ +.
T Consensus 146 ~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~--~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~a~~pL~g-~~--- 219 (290)
T PRK10376 146 PLTVLAELQRQGLVRHIGLSNVTPTQVAEARKIAE--IVCVQNHYNLAHRADDALIDALARDGIAYVPFFPLGG-FT--- 219 (290)
T ss_pred HHHHHHHHHHCCceeEEEecCCCHHHHHHHHhhCC--eEEEecccCCCcCChHHHHHHHHHcCCEEEEeecCCC-CC---
Confidence 99999999999999999999999999999888654 57899999999876 6799999999999999999974 31
Q ss_pred CCccCChHHHHHHHHHhCCCHHHHHHHHHhhcC--CEEEeCCCCHHHHHHhhccccccCCHHHHHHHhccCC
Q 035739 241 SNQVLENEALKEIAKARGKTVAQVSLRWIVEQG--ATVVIKSLNLERMKQNLGIFDWKLTDDDYDKINQIPQ 310 (335)
Q Consensus 241 ~~~~~~~~~l~~la~~~g~s~~q~al~~~l~~~--~~vi~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~ 310 (335)
....+.++++|+++|+|++|+||+|+++++ +++|+|+++++|+++|+++++++|++++++.|+++..
T Consensus 220 ---~~~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e~~~~l~~~~~ 288 (290)
T PRK10376 220 ---PLQSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEEVLAELDGIAR 288 (290)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHHh
Confidence 123478999999999999999999999874 7899999999999999999999999999999998754
No 13
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=1.8e-52 Score=383.40 Aligned_cols=256 Identities=34% Similarity=0.615 Sum_probs=220.0
Q ss_pred cceeeCcccCccccccCCCChHHHHHHHHHHHHcCCCEeeCCCCcC---CHHHHHHHHHHHHHcCCCCCCCceEEeecc-
Q 035739 28 VIGLGCAVDKCLRCAVDKSDTDALKLVVLEAIKLGYRHFDTAAMYG---TEKALGEAIAEALRLGLVSSREQLFITSKL- 103 (335)
Q Consensus 28 ~lg~G~~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg---se~~lG~~l~~~~~~g~~~~R~~~~i~tK~- 103 (335)
+||||||++++. ..+.+++.++|+.|++.|||+||||+.|| +|..+|++|+.. +. +|++++|+||+
T Consensus 1 ~l~lG~~~~~~~-----~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~---~~--~r~~~~i~tK~~ 70 (283)
T PF00248_consen 1 PLGLGTWRLGGE-----RVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKS---RV--PRDDIFISTKVY 70 (283)
T ss_dssp SBEEECTTBTTT-----TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHT---SS--TGGGSEEEEEEE
T ss_pred CEEEEccccCCC-----CCCHHHHHHHHHHHHHcCCCeecccccccccccccccccccccc---cc--cccccccccccc
Confidence 589999999752 56889999999999999999999999993 899999999982 44 89999999999
Q ss_pred ----CCCCCChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEE
Q 035739 104 ----WCQNAHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIG 179 (335)
Q Consensus 104 ----~~~~~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iG 179 (335)
+....+++.+++++++||++||+||||+|++|+|+... ....++|++|++|+++|+||+||
T Consensus 71 ~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~---------------~~~~~~~~~l~~l~~~G~ir~iG 135 (283)
T PF00248_consen 71 GDGKPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSE---------------DALEEVWEALEELKKEGKIRHIG 135 (283)
T ss_dssp SSSSTGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTS---------------SHHHHHHHHHHHHHHTTSEEEEE
T ss_pred ccccccccccccccccccccccccccccchhccccccccccc---------------cccchhhhhhhhccccccccccc
Confidence 55677899999999999999999999999999997632 13889999999999999999999
Q ss_pred ecCccHHHHHHHHHhcCCCCccccCCCCcccc--cHHHHHHHHHcCCeEEEeccCCCCCCcCCCCcc-------------
Q 035739 180 LSNFSRKKIETILTFATIPPSINQVEMHPVWQ--QRKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQV------------- 244 (335)
Q Consensus 180 vs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~--~~~~l~~~~~~gi~v~a~~pl~~~G~l~~~~~~------------- 244 (335)
||||+++.+.++.....++|+++|++||++.+ ..+++++|+++||++++|+|+++ |.+.+....
T Consensus 136 vs~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~-G~l~~~~~~~~~~~~~~~~~~~ 214 (283)
T PF00248_consen 136 VSNFSPEQLEAALKIGSIPPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAG-GLLTGKYKSPPPPPSRASLRDA 214 (283)
T ss_dssp EES--HHHHHHHHTCTSS-ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGG-GCGGTTTTTTTTSTTTSGSSTH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-CccccccccCCCcccccccchh
Confidence 99999999999977778899999999999933 47899999999999999999998 988754211
Q ss_pred -CChHHHHHHHHHhCCCHHHHHHHHHhhcC--CEEEeCCCCHHHHHHhhccccccCCHHHHHHHhccC
Q 035739 245 -LENEALKEIAKARGKTVAQVSLRWIVEQG--ATVVIKSLNLERMKQNLGIFDWKLTDDDYDKINQIP 309 (335)
Q Consensus 245 -~~~~~l~~la~~~g~s~~q~al~~~l~~~--~~vi~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~ 309 (335)
...+.+.++++++|+|++|+||+|+++++ +++|+|+++++|+++|+++++++||+++++.|+++.
T Consensus 215 ~~~~~~l~~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 215 QELADALRELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp GGGHHHHHHHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred hhhhhhhhhhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 34578999999999999999999999875 899999999999999999999999999999999873
No 14
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=6e-51 Score=373.71 Aligned_cols=259 Identities=16% Similarity=0.179 Sum_probs=217.8
Q ss_pred CCccCCcceeeCcccCcccc----ccCCCChHHHHHHHHHHHHcCCCEeeCCCCcC-CHHHHHHHHHHHHHcCCCCCCCc
Q 035739 22 GHLNMPVIGLGCAVDKCLRC----AVDKSDTDALKLVVLEAIKLGYRHFDTAAMYG-TEKALGEAIAEALRLGLVSSREQ 96 (335)
Q Consensus 22 g~~~vs~lg~G~~~~~~~~~----~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg-se~~lG~~l~~~~~~g~~~~R~~ 96 (335)
| ++||+||||||++|..++ .++..+.+++.++|+.|++.|||+||||+.|| ||..+|++|+.. .+++
T Consensus 2 ~-~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~SE~~lG~al~~~-------~~~~ 73 (292)
T PRK14863 2 S-SPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLFGRAETVLGQLIPRP-------VPFR 73 (292)
T ss_pred C-CcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhhhhHHHHHhhhhccC-------CceE
Confidence 5 899999999999985211 13466889999999999999999999999999 899999999741 3567
Q ss_pred eEEeeccCCCCCChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcc
Q 035739 97 LFITSKLWCQNAHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTK 176 (335)
Q Consensus 97 ~~i~tK~~~~~~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir 176 (335)
++|+||.. +.+++.+++++++||+|||+||||+|++|+|+.... ....++|++|++|+++||||
T Consensus 74 ~~i~tk~~--~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~--------------~~~~~~~~~l~~l~~~Gkir 137 (292)
T PRK14863 74 VTLSTVRA--DRGPDFVEAEARASLRRMGVERADAILVHSPTELFG--------------PHGAALWERLQALKDQGLFA 137 (292)
T ss_pred eecccccc--cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcC--------------cchHHHHHHHHHHHHcCCcc
Confidence 99999853 356899999999999999999999999999864210 11357899999999999999
Q ss_pred EEEecCccHHHHHHHHHhcCCCCccccCCCCccccc---HHHHHHHHHcCCeEEEeccCCCCCCcCCCCcc---------
Q 035739 177 SIGLSNFSRKKIETILTFATIPPSINQVEMHPVWQQ---RKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQV--------- 244 (335)
Q Consensus 177 ~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~~l~~~~~~gi~v~a~~pl~~~G~l~~~~~~--------- 244 (335)
+||||||+++++.++.+ ..+|+++|++||+++++ .+++++|+++||++++|+||++ |+|++....
T Consensus 138 ~iGvSn~~~~~~~~~~~--~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~-G~L~~~~~~~~~~~~~~~ 214 (292)
T PRK14863 138 KIGVSAHASDDPVGVAR--RFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLN-GLLFLPPDRVPAQLKGAS 214 (292)
T ss_pred eEeeeccCHHHHHHHHh--cCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhC-ccccCCcccCccchhhhh
Confidence 99999999999887765 34788999999999986 3599999999999999999998 998754211
Q ss_pred CChHHHHHHHHHhCCCHHHHHHHHHhhcC--CEEEeCCCCHHHHHHhhccccccCCHHHHHHHhc
Q 035739 245 LENEALKEIAKARGKTVAQVSLRWIVEQG--ATVVIKSLNLERMKQNLGIFDWKLTDDDYDKINQ 307 (335)
Q Consensus 245 ~~~~~l~~la~~~g~s~~q~al~~~l~~~--~~vi~g~~~~~~l~enl~a~~~~L~~~~~~~l~~ 307 (335)
.....+.++++++++|++|+||+|++++| +++|+|+++++|+++|+++...+++++.+++|..
T Consensus 215 ~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~~ 279 (292)
T PRK14863 215 GRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMAI 279 (292)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhccC
Confidence 01234567788889999999999999998 7889999999999999999988899888776653
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=4.9e-50 Score=342.84 Aligned_cols=271 Identities=27% Similarity=0.451 Sum_probs=241.6
Q ss_pred cceEEcCCCCCCccCCcceeeCcccCccccccCCCChHHHHHHHHHHHHcCCCEeeCCCCcC---CHHHHHHHHHHHHHc
Q 035739 12 IPKLKLSSSSGHLNMPVIGLGCAVDKCLRCAVDKSDTDALKLVVLEAIKLGYRHFDTAAMYG---TEKALGEAIAEALRL 88 (335)
Q Consensus 12 m~~~~lg~t~g~~~vs~lg~G~~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg---se~~lG~~l~~~~~~ 88 (335)
|++.+|++. | +++|+|.+|+|++.. + ..+.+++...++.|++.|||+||-|+.|| +|+++|.+|+-. +
T Consensus 1 m~rI~l~~~-~-~e~Sriv~G~wRl~d----~-~~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~--p 71 (298)
T COG4989 1 MQRITLAPD-G-LEFSRIVLGYWRLND----W-NMSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLA--P 71 (298)
T ss_pred CceEEecCC-C-ccHHHHHHHHHhhhh----c-cCCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcC--h
Confidence 788999976 8 999999999999964 2 33567889999999999999999999999 899999999854 3
Q ss_pred CCCCCCCceEEeeccCC------------CCCChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCC
Q 035739 89 GLVSSREQLFITSKLWC------------QNAHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLP 156 (335)
Q Consensus 89 g~~~~R~~~~i~tK~~~------------~~~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~ 156 (335)
+ -|+++.|.||++. .+.+.++|..++|+||++|+|||+|+++||+||+ -
T Consensus 72 ~---lRekieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDp----------------L 132 (298)
T COG4989 72 G---LREKIEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDP----------------L 132 (298)
T ss_pred h---hhhheEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcc----------------c
Confidence 4 6999999999963 3568999999999999999999999999999987 4
Q ss_pred CCHHHHHHHHHHHHHcCCccEEEecCccHHHHHHHHHhcCCCCccccCCCCccccc---HHHHHHHHHcCCeEEEeccCC
Q 035739 157 MDYRGVWEAMEESQMLGLTKSIGLSNFSRKKIETILTFATIPPSINQVEMHPVWQQ---RKLIEFCKAKGIIVTAYSPLG 233 (335)
Q Consensus 157 ~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~~l~~~~~~gi~v~a~~pl~ 233 (335)
++.+++-+|+..|.+.||||++|||||++.+++-+-+....+.++||+++|+++.. ...+++|+.+.|..++||||+
T Consensus 133 md~eeVAeAf~~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~ 212 (298)
T COG4989 133 MDAEEVAEAFTHLHKSGKVRHFGVSNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLG 212 (298)
T ss_pred CCHHHHHHHHHHHHhcCCeeeeecCCCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccC
Confidence 66999999999999999999999999999999999888888899999999999875 569999999999999999999
Q ss_pred CCCCcCCCCccC--ChHHHHHHHHHhC-CCHHHHHHHHHhhcC--CEEEeCCCCHHHHHHhhccccccCCHHHHHHHhcc
Q 035739 234 AVGKIYGSNQVL--ENEALKEIAKARG-KTVAQVSLRWIVEQG--ATVVIKSLNLERMKQNLGIFDWKLTDDDYDKINQI 308 (335)
Q Consensus 234 ~~G~l~~~~~~~--~~~~l~~la~~~g-~s~~q~al~~~l~~~--~~vi~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~ 308 (335)
+ |.++...... -...+..+|+++| +|..+++++|++.+| ..+|+|+.+++++++.+++.+..|+.+++-+|-.+
T Consensus 213 g-G~~F~g~~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRqqWf~Iy~A 291 (298)
T COG4989 213 G-GGLFLGDDKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLTRQQWFEIYTA 291 (298)
T ss_pred C-CccccCCcchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 8 6665433222 2467889999999 799999999999999 78999999999999999999999999999999766
Q ss_pred CCC
Q 035739 309 PQH 311 (335)
Q Consensus 309 ~~~ 311 (335)
..+
T Consensus 292 a~G 294 (298)
T COG4989 292 AIG 294 (298)
T ss_pred hcc
Confidence 533
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=6.4e-50 Score=360.15 Aligned_cols=291 Identities=21% Similarity=0.301 Sum_probs=247.9
Q ss_pred cceEEcCCCCCCccCCcceeeCcccCccccccCCCChHHHHHHHHHHHHcCCCEeeCCCCc--C-CHHHHHHHHHHHHHc
Q 035739 12 IPKLKLSSSSGHLNMPVIGLGCAVDKCLRCAVDKSDTDALKLVVLEAIKLGYRHFDTAAMY--G-TEKALGEAIAEALRL 88 (335)
Q Consensus 12 m~~~~lg~t~g~~~vs~lg~G~~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Y--g-se~~lG~~l~~~~~~ 88 (335)
|.||++++| | .++|.+|||||++..... +..+.+.+.++|++|++.|||+||||..| | ||..+|+||++.
T Consensus 1 Mlyr~~~k~-g-~~~s~lgfG~MRlp~~~~--~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~--- 73 (391)
T COG1453 1 MLYRKFPKT-G-DELSILGFGCMRLPLKEQ--GSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDG--- 73 (391)
T ss_pred CchhhcCCC-C-cccceeccceeecccccC--CCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhc---
Confidence 789999999 9 999999999999975322 56688999999999999999999999999 6 999999999984
Q ss_pred CCCCCCCceEEeeccCCC-CCChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 035739 89 GLVSSREQLFITSKLWCQ-NAHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAME 167 (335)
Q Consensus 89 g~~~~R~~~~i~tK~~~~-~~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 167 (335)
.|++|+++||+..+ -.+.+.+++-++++|++||+||+|+|+||..... .|......++++.++
T Consensus 74 ----~Rekv~LaTKlp~~~~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e------------~~~k~~~~g~~df~~ 137 (391)
T COG1453 74 ----YREKVKLATKLPSWPVKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTE------------TWEKIERLGVFDFLE 137 (391)
T ss_pred ----ccceEEEEeecCCccccCHHHHHHHHHHHHHHhCCchhhhhhhccccHH------------HHHHHHccChHHHHH
Confidence 89999999999643 3468999999999999999999999999988542 222233344799999
Q ss_pred HHHHcCCccEEEecCcc-HHHHHHHHHhcCCCCccccCCCCccccc----HHHHHHHHHcCCeEEEeccCCCCCCcCCCC
Q 035739 168 ESQMLGLTKSIGLSNFS-RKKIETILTFATIPPSINQVEMHPVWQQ----RKLIEFCKAKGIIVTAYSPLGAVGKIYGSN 242 (335)
Q Consensus 168 ~l~~~Gkir~iGvs~~~-~~~l~~~~~~~~~~~~~~q~~~~~~~~~----~~~l~~~~~~gi~v~a~~pl~~~G~l~~~~ 242 (335)
++|++||||++|||.|+ .+.+.+++.... ++++|++||.+++. .+.+.+|.++|++|+.++|+.+ |.|...
T Consensus 138 kak~eGkIr~~GFSfHgs~e~~~~iv~a~~--~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~g-G~l~~~- 213 (391)
T COG1453 138 KAKAEGKIRNAGFSFHGSTEVFKEIVDAYP--WDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDG-GGLLYN- 213 (391)
T ss_pred HHHhcCcEEEeeecCCCCHHHHHHHHhcCC--cceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCC-CCcccC-
Confidence 99999999999999998 667888888765 67999999999886 3789999999999999999998 655321
Q ss_pred ccCChHHHHHHHHHhC--CCHHHHHHHHHhhcC--CEEEeCCCCHHHHHHhhccccc--c-CCHHHHHHHhccCCC---C
Q 035739 243 QVLENEALKEIAKARG--KTVAQVSLRWIVEQG--ATVVIKSLNLERMKQNLGIFDW--K-LTDDDYDKINQIPQH---R 312 (335)
Q Consensus 243 ~~~~~~~l~~la~~~g--~s~~q~al~~~l~~~--~~vi~g~~~~~~l~enl~a~~~--~-L~~~~~~~l~~~~~~---~ 312 (335)
-.+++.++++++. .||+.+|+||++++| ++++.|+++++|++||++.++. | ||++|++.|.++.+. .
T Consensus 214 ---vP~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lte~e~~il~~v~~~~~~~ 290 (391)
T COG1453 214 ---VPEKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEPSLTEEELQILEKVEEIYRES 290 (391)
T ss_pred ---CCHHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHH
Confidence 2378899999986 689999999999999 7899999999999999998764 4 999998888776443 3
Q ss_pred ccCCccccCCCCCccccccc
Q 035739 313 LIPSDFWVSPQGPFKTLEEL 332 (335)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~ 332 (335)
...++..|.+|.|||+.++|
T Consensus 291 ~~v~Ct~C~yC~PCP~gInI 310 (391)
T COG1453 291 LKVPCTGCRYCLPCPSGINI 310 (391)
T ss_pred hcCCCccccccCcCCCCCCh
Confidence 33357788888999999876
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=3e-46 Score=321.82 Aligned_cols=291 Identities=21% Similarity=0.262 Sum_probs=236.8
Q ss_pred cccccceEEcCCCCCCccCCcceeeCcccCccccccCCCChHHHHHHHHHHHHcCCCEeeCCCCcC---CHHHHHHHHHH
Q 035739 8 TVFNIPKLKLSSSSGHLNMPVIGLGCAVDKCLRCAVDKSDTDALKLVVLEAIKLGYRHFDTAAMYG---TEKALGEAIAE 84 (335)
Q Consensus 8 ~~~~m~~~~lg~t~g~~~vs~lg~G~~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg---se~~lG~~l~~ 84 (335)
.+..|+||.+|+| | ++||+||||...++..++. .+.++....+.+|++.|||+|||++.|| +|+.+|.++++
T Consensus 18 ~vrrmeyR~lg~t-g-l~VSk~~fGga~L~~~fgd---~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~ 92 (342)
T KOG1576|consen 18 KVRRMEYRQLGST-G-LRVSKLGFGGAALGQLFGD---EDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKD 92 (342)
T ss_pred HHHHHHHhhcCCC-c-ceeeeeeecchhhhhhcCC---cchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhh
Confidence 3566999999999 9 9999999999999864433 4667777778889999999999999999 89999999997
Q ss_pred HHHcCCCCCCCceEEeeccCC--------CCCChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCC
Q 035739 85 ALRLGLVSSREQLFITSKLWC--------QNAHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLP 156 (335)
Q Consensus 85 ~~~~g~~~~R~~~~i~tK~~~--------~~~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~ 156 (335)
. ||+.+||+||++. .+++++.+++++++||+||++||+|++++|..++... .+
T Consensus 93 v-------PR~aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~------------ld 153 (342)
T KOG1576|consen 93 V-------PREAYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPN------------LD 153 (342)
T ss_pred C-------ChhheeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeeccccccc------------cc
Confidence 5 9999999999974 4678999999999999999999999999999876532 13
Q ss_pred CCHHHHHHHHHHHHHcCCccEEEecCccHHHHHHHHHhcCCCCcccc--CCCCccccc-HHHHHHHHHcCCeEEEeccCC
Q 035739 157 MDYRGVWEAMEESQMLGLTKSIGLSNFSRKKIETILTFATIPPSINQ--VEMHPVWQQ-RKLIEFCKAKGIIVTAYSPLG 233 (335)
Q Consensus 157 ~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q--~~~~~~~~~-~~~l~~~~~~gi~v~a~~pl~ 233 (335)
....|++.+|+++|++||||+||++.++.+.+.++++...-...++. ++|++.+.. ...+++.+.+|++|+..++++
T Consensus 154 ~vl~Etlp~Le~lk~~Gk~RfiGitgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~tLl~~~~~~~sk~vgVi~Asals 233 (342)
T KOG1576|consen 154 IVLNETLPALEELKQEGKIRFIGITGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNTLLRYLKRLKSKGVGVINASALS 233 (342)
T ss_pred HHHHHHHHHHHHHHhcCceeEeeecccchHHHHHHHhcCCCceeeehhhhhhccccHHHHHHHHHHHhcCceEEehhhHH
Confidence 55889999999999999999999999999999999886654444444 555555443 456788889999999999999
Q ss_pred CCCCcCCCCccCCh----------HHHHHHHHHhCCCHHHHHHHHHhhcC--CEEEeCCCCHHHHHHhhccccccCCH-H
Q 035739 234 AVGKIYGSNQVLEN----------EALKEIAKARGKTVAQVSLRWIVEQG--ATVVIKSLNLERMKQNLGIFDWKLTD-D 300 (335)
Q Consensus 234 ~~G~l~~~~~~~~~----------~~l~~la~~~g~s~~q~al~~~l~~~--~~vi~g~~~~~~l~enl~a~~~~L~~-~ 300 (335)
. |+|+..++..++ ....++|++.|+....+|+.|.++.+ .++++|+++.++++.|+++....||. +
T Consensus 234 m-gLLt~~gp~~wHPaS~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~~~ 312 (342)
T KOG1576|consen 234 M-GLLTNQGPPPWHPASDELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSSKH 312 (342)
T ss_pred H-HHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccccchh
Confidence 8 999865544332 23456777889999999999999987 89999999999999999986667887 4
Q ss_pred HHHHHhccCCCC-ccCCccccCCC
Q 035739 301 DYDKINQIPQHR-LIPSDFWVSPQ 323 (335)
Q Consensus 301 ~~~~l~~~~~~~-~~~~~~~~~~~ 323 (335)
+...+.-+.+.. +..+..|....
T Consensus 313 ~Qevl~~~r~~~~~~kn~~W~g~~ 336 (342)
T KOG1576|consen 313 EQEVLRILREILKETKNEEWEGGI 336 (342)
T ss_pred HHHHHHHHHHHhhhhccCCCCCCC
Confidence 444444333333 45566675443
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.62 E-value=7.4e-08 Score=83.06 Aligned_cols=139 Identities=17% Similarity=0.229 Sum_probs=100.0
Q ss_pred CCCceEEeeccCCCCCChhhHHHHHHHHHHHhCCC----ccceE------EeecCCCCCC------CCCCCCCCCCCCCC
Q 035739 93 SREQLFITSKLWCQNAHRDHVIPALKKSLSALQME----YLDLY------LVHWPISSKP------GELGFPEPKEDLLP 156 (335)
Q Consensus 93 ~R~~~~i~tK~~~~~~~~~~i~~~~e~sL~~Lg~d----~iDl~------~lH~p~~~~~------~~~~~~~~~~~~~~ 156 (335)
.++++-+..|.+..++..+.++...+..++-+-.- -+|.+ .+|...-..+ ...++.++..+..-
T Consensus 73 ~~~E~si~vklf~ndh~~e~in~~eeelmkVf~~lh~v~~id~~st~~v~~~~~~~l~v~~lssv~ia~~sied~~n~~~ 152 (285)
T KOG3023|consen 73 KQEEYSIIVKLFFNDHENEDINKREEELMKVFYNLHMVFGIDFVSTLVVSFPHITFLKVSGLSSVNIAYDSIEDIPNQEI 152 (285)
T ss_pred cccccceeeEEeecccchhhhcHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccceeecccCccchhccCChhhhcchhhH
Confidence 57788888999887887788888888776655322 22221 1121110000 01111111111112
Q ss_pred CCHHHHHHHHHHHHHcCCccEEEecCccHHHHHHHHHhcCCCCccccCCCCccccc-HHHHHHHHHcCCeEEEecc
Q 035739 157 MDYRGVWEAMEESQMLGLTKSIGLSNFSRKKIETILTFATIPPSINQVEMHPVWQQ-RKLIEFCKAKGIIVTAYSP 231 (335)
Q Consensus 157 ~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~~l~~~~~~gi~v~a~~p 231 (335)
....++|+.||+++.+|+|..||+|.|++.+|++++..+.+.|.++|+++.-++.- .++..||.+++|.+..++-
T Consensus 153 e~lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvPpdLqafa~~hdiQLltHsD 228 (285)
T KOG3023|consen 153 ESLKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVPPDLQAFADRHDIQLLTHSD 228 (285)
T ss_pred HHHHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCCHHHHHHhhhcceeeeecCC
Confidence 33667999999999999999999999999999999999999999999999988876 7899999999999998763
No 19
>PRK08392 hypothetical protein; Provisional
Probab=92.20 E-value=7.4 Score=33.93 Aligned_cols=180 Identities=15% Similarity=0.110 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHcCCCEeeCCCCcC--CHHHHHHHHHHHHHcCCCCCCCc--eEEeeccCCCCCChhhHHHHHHHHHHHhC
Q 035739 50 ALKLVVLEAIKLGYRHFDTAAMYG--TEKALGEAIAEALRLGLVSSREQ--LFITSKLWCQNAHRDHVIPALKKSLSALQ 125 (335)
Q Consensus 50 ~~~~~l~~A~~~Gin~~DtA~~Yg--se~~lG~~l~~~~~~g~~~~R~~--~~i~tK~~~~~~~~~~i~~~~e~sL~~Lg 125 (335)
...++++.|.+.|++.|=.+++.- ....+...+++..+.. .+.+ +++..-+.... +. ....++.+++
T Consensus 15 ~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~---~~~~i~il~GiE~~~~~---~~-~~~~~~~~~~-- 85 (215)
T PRK08392 15 SVRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWG---EESEIVVLAGIEANITP---NG-VDITDDFAKK-- 85 (215)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHh---hccCceEEEeEEeeecC---Cc-chhHHHHHhh--
Confidence 467899999999999986666653 1112222222221101 1222 23333332211 11 2334444553
Q ss_pred CCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCc-------c-HHHHHHHHHh---
Q 035739 126 MEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNF-------S-RKKIETILTF--- 194 (335)
Q Consensus 126 ~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~-------~-~~~l~~~~~~--- 194 (335)
.||+ +.-+|.... .....+.++.+.++.+.|.+.-+|=-.. . ...++++++.
T Consensus 86 ~D~v-I~SvH~~~~----------------~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~ 148 (215)
T PRK08392 86 LDYV-IASVHEWFG----------------RPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEA 148 (215)
T ss_pred CCEE-EEEeecCcC----------------CcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHH
Confidence 4665 667784311 0114577788888888998776663211 1 1333444333
Q ss_pred cCCCCccccCCCCcccccHHHHHHHHHcCCeEEEeccCCCCCCcCCCCccCChHHHHHHHHHhCCCHHHH
Q 035739 195 ATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLENEALKEIAKARGKTVAQV 264 (335)
Q Consensus 195 ~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~g~s~~q~ 264 (335)
.+..+.+|- ....+..++++.|++.|+.++.-| =+. . +..+...+...+++++.|.++.++
T Consensus 149 ~g~~lEiNt---~~~~p~~~~l~~~~~~G~~~~igS-DAH-~----~~~vg~~~~a~~~~~~~g~~~~~~ 209 (215)
T PRK08392 149 YGKAFEISS---RYRVPDLEFIRECIKRGIKLTFAS-DAH-R----PEDVGNVSWSLKVFKKAGGKKEDL 209 (215)
T ss_pred hCCEEEEeC---CCCCCCHHHHHHHHHcCCEEEEeC-CCC-C----hHHCCcHHHHHHHHHHcCCCHHHe
Confidence 333333432 112344679999999998765433 222 1 112222356677888888877653
No 20
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=89.43 E-value=20 Score=34.21 Aligned_cols=149 Identities=19% Similarity=0.240 Sum_probs=91.6
Q ss_pred ChHHHHHHHHHHHHcCCCEe-eCCCCcCCHHHHHHHHHHHHHcCCCCCCCceEE---eecc--CCCCCChhhHHHHHHHH
Q 035739 47 DTDALKLVVLEAIKLGYRHF-DTAAMYGTEKALGEAIAEALRLGLVSSREQLFI---TSKL--WCQNAHRDHVIPALKKS 120 (335)
Q Consensus 47 ~~~~~~~~l~~A~~~Gin~~-DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~~~i---~tK~--~~~~~~~~~i~~~~e~s 120 (335)
+.+.-.+-++.|++.|-..+ |-+ ..|.-..+-+.+-+. ..+ +-..|=| ..+. ...+.+.+.+.+.+|+.
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLS-tGgdl~~iR~~il~~--s~v--pvGTVPiYqa~~~~~~~~~~mt~d~~~~~ie~q 149 (423)
T TIGR00190 75 DIEEEVEKALIAIKYGADTVMDLS-TGGDLDEIRKAILDA--VPV--PVGTVPIYQAAEKVHGAVEDMDEDDMFRAIEKQ 149 (423)
T ss_pred CHHHHHHHHHHHHHcCCCeEeecc-CCCCHHHHHHHHHHc--CCC--CccCccHHHHHHHhcCChhhCCHHHHHHHHHHH
Confidence 55555677899999997644 555 555544444444321 011 1111100 1111 12356677788777776
Q ss_pred HHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCccHHHHHHHHHhcCCCCc
Q 035739 121 LSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSRKKIETILTFATIPPS 200 (335)
Q Consensus 121 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~ 200 (335)
.+ +-+|.+-+|.- =..+.++.+++.|+ ..|+-+-...-+.......+
T Consensus 150 a~----dGVDfmTiH~G-----------------------i~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~~~---- 196 (423)
T TIGR00190 150 AK----DGVDFMTIHAG-----------------------VLLEYVERLKRSGR--ITGIVSRGGAILAAWMLHHH---- 196 (423)
T ss_pred HH----hCCCEEEEccc-----------------------hhHHHHHHHHhCCC--ccCeecCcHHHHHHHHHHcC----
Confidence 65 55788999964 24578889999885 47887777666666555443
Q ss_pred cccCCCCccccc-HHHHHHHHHcCCeEEEeccCCCCCCc
Q 035739 201 INQVEMHPVWQQ-RKLIEFCKAKGIIVTAYSPLGAVGKI 238 (335)
Q Consensus 201 ~~q~~~~~~~~~-~~~l~~~~~~gi~v~a~~pl~~~G~l 238 (335)
.=||+..+ .++++.|+++++.+----.|.. |-+
T Consensus 197 ----~ENPlye~fD~lLeI~~~yDVtlSLGDglRP-G~i 230 (423)
T TIGR00190 197 ----KENPLYKNFDYILEIAKEYDVTLSLGDGLRP-GCI 230 (423)
T ss_pred ----CcCchHHHHHHHHHHHHHhCeeeeccCCcCC-Ccc
Confidence 33566655 6799999999998866555544 444
No 21
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=89.20 E-value=4.5 Score=34.68 Aligned_cols=100 Identities=16% Similarity=0.215 Sum_probs=71.8
Q ss_pred HHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCccHHHHHHHHHhcC
Q 035739 117 LKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSRKKIETILTFAT 196 (335)
Q Consensus 117 ~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~ 196 (335)
+++.|..+.-+..|.+.+..--.. .....+.|+++..=|+---|+|.||.-+....-+-..+
T Consensus 64 ld~gL~~f~d~sFD~VIlsqtLQ~------------------~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~G 125 (193)
T PF07021_consen 64 LDEGLADFPDQSFDYVILSQTLQA------------------VRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRG 125 (193)
T ss_pred HHHhHhhCCCCCccEEehHhHHHh------------------HhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcC
Confidence 455566666667777766643211 23344557777777888889999999777666555455
Q ss_pred CCCccccCCCCccccc-------HHHHHHHHHcCCeEEEeccCCC
Q 035739 197 IPPSINQVEMHPVWQQ-------RKLIEFCKAKGIIVTAYSPLGA 234 (335)
Q Consensus 197 ~~~~~~q~~~~~~~~~-------~~~l~~~~~~gi~v~a~~pl~~ 234 (335)
--|+.-.++|.-++.. .+..++|++.||.+.-..++..
T Consensus 126 rmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 126 RMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDG 170 (193)
T ss_pred CCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcC
Confidence 5577888888877653 6788999999999999999876
No 22
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=87.81 E-value=3.9 Score=36.85 Aligned_cols=102 Identities=12% Similarity=0.080 Sum_probs=72.7
Q ss_pred HHHHHHcCCccEEEe-cCccHHHHHHHHHhcCCCCccccCCCCccccc--HHHHHHHHHcCCeEEEeccCCCCCCcCCCC
Q 035739 166 MEESQMLGLTKSIGL-SNFSRKKIETILTFATIPPSINQVEMHPVWQQ--RKLIEFCKAKGIIVTAYSPLGAVGKIYGSN 242 (335)
Q Consensus 166 L~~l~~~Gkir~iGv-s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~l~~~~~~gi~v~a~~pl~~~G~l~~~~ 242 (335)
|.+..++|+. -+|+ .......+.+++...+++++++=.+-.+++.+ ..++..|+..|+..++.-|-..
T Consensus 10 lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~-------- 80 (256)
T PRK10558 10 FKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNE-------- 80 (256)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCC--------
Confidence 4444455775 3553 44445567778888889988888887777665 5688889999999888877653
Q ss_pred ccCChHHHHHHHHHhCCCHHHHHHHHHhhcC--CEEEeCCCCHHHHHHhhcccccc
Q 035739 243 QVLENEALKEIAKARGKTVAQVSLRWIVEQG--ATVVIKSLNLERMKQNLGIFDWK 296 (335)
Q Consensus 243 ~~~~~~~l~~la~~~g~s~~q~al~~~l~~~--~~vi~g~~~~~~l~enl~a~~~~ 296 (335)
...++.+|..| .+++|-..+.+++++.+++..++
T Consensus 81 --------------------~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~kyp 116 (256)
T PRK10558 81 --------------------PVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRYP 116 (256)
T ss_pred --------------------HHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCCC
Confidence 13456677777 56777888888888888777663
No 23
>PRK08609 hypothetical protein; Provisional
Probab=86.82 E-value=38 Score=34.32 Aligned_cols=184 Identities=13% Similarity=0.119 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHcCCCEeeCCCCcC--------CHHHHHHHHHHH--HHcCCCCCCCceEEeeccCCCCCChhhHHHHHHH
Q 035739 50 ALKLVVLEAIKLGYRHFDTAAMYG--------TEKALGEAIAEA--LRLGLVSSREQLFITSKLWCQNAHRDHVIPALKK 119 (335)
Q Consensus 50 ~~~~~l~~A~~~Gin~~DtA~~Yg--------se~~lG~~l~~~--~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~~e~ 119 (335)
...++++.|.+.|+..|=.++|+. +...+-..+++. +.+.+ ..=+|++..-+... ++....-.+.
T Consensus 350 sleemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~--~~i~Il~GiEv~i~---~~g~~d~~~~ 424 (570)
T PRK08609 350 SIEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKY--PEIDILSGIEMDIL---PDGSLDYDDE 424 (570)
T ss_pred CHHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhc--CCCeEEEEEEEeec---CCcchhhcHH
Confidence 366799999999999987777752 222222222111 11111 11133333333221 1222333344
Q ss_pred HHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecC------cc--HHHHHHH
Q 035739 120 SLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSN------FS--RKKIETI 191 (335)
Q Consensus 120 sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~------~~--~~~l~~~ 191 (335)
.|+. .||+ +.-+|++.. ....++++.+.++.+.|.+.-||=-. .. ...++++
T Consensus 425 ~L~~--~D~v-I~SvH~~~~-----------------~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i 484 (570)
T PRK08609 425 VLAE--LDYV-IAAIHSSFS-----------------QSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQL 484 (570)
T ss_pred HHHh--hCEE-EEEeecCCC-----------------CCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHH
Confidence 5554 4666 777886521 12567788999999999888776433 11 2334444
Q ss_pred HHhcCCCCccccCCCCcccc--cHHHHHHHHHcCCeEEEeccCCCCCCcCCCCccCChHHHHHHHHHhCCCHHHH
Q 035739 192 LTFATIPPSINQVEMHPVWQ--QRKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLENEALKEIAKARGKTVAQV 264 (335)
Q Consensus 192 ~~~~~~~~~~~q~~~~~~~~--~~~~l~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~g~s~~q~ 264 (335)
++.+.-.-.++|++-++... ...++..|++.|+.++.-| =+. .+..+..-+.-..+|++-+.++.++
T Consensus 485 ~~~a~~~G~~lEINa~~~r~~~~~~~~~~~~e~Gv~i~igS-DAH-----~~~~l~~~~~~v~~ar~~~~~~~~v 553 (570)
T PRK08609 485 IELAKETNTALELNANPNRLDLSAEHLKKAQEAGVKLAINT-DAH-----HTEMLDDMKYGVATARKGWIQKDRV 553 (570)
T ss_pred HHHHHHhCCEEEEcCCccccCccHHHHHHHHHcCCEEEEEC-CCC-----ChhhhCcHHHHHHHHHHcCCCHHHc
Confidence 44322112356666555432 3678999999999754433 222 1123334455667777777766553
No 24
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=85.71 E-value=9.9 Score=34.48 Aligned_cols=103 Identities=10% Similarity=-0.008 Sum_probs=73.9
Q ss_pred HHHHHHcCCccEEEecCccHHHHHHHHHhcCCCCccccCCCCccccc--HHHHHHHHHcCCeEEEeccCCCCCCcCCCCc
Q 035739 166 MEESQMLGLTKSIGLSNFSRKKIETILTFATIPPSINQVEMHPVWQQ--RKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQ 243 (335)
Q Consensus 166 L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~l~~~~~~gi~v~a~~pl~~~G~l~~~~~ 243 (335)
|.+..++|+.-.=.........+.+++...+++++++=.+-.+++.+ ..++..++..|+..++.-|-..
T Consensus 9 lk~~L~~G~~~~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~--------- 79 (267)
T PRK10128 9 FKEGLRKGEVQIGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGS--------- 79 (267)
T ss_pred HHHHHHcCCceEEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCC---------
Confidence 44444557764323344445567777777889888888888887665 4678888889998888776542
Q ss_pred cCChHHHHHHHHHhCCCHHHHHHHHHhhcC--CEEEeCCCCHHHHHHhhcccccc
Q 035739 244 VLENEALKEIAKARGKTVAQVSLRWIVEQG--ATVVIKSLNLERMKQNLGIFDWK 296 (335)
Q Consensus 244 ~~~~~~l~~la~~~g~s~~q~al~~~l~~~--~~vi~g~~~~~~l~enl~a~~~~ 296 (335)
...++.+|..| .+++|-..+.++.++.+++..++
T Consensus 80 -------------------~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rYp 115 (267)
T PRK10128 80 -------------------KPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYP 115 (267)
T ss_pred -------------------HHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCCC
Confidence 13557788888 67888888999999998888764
No 25
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=83.04 E-value=12 Score=33.64 Aligned_cols=98 Identities=13% Similarity=0.079 Sum_probs=67.9
Q ss_pred HHHcCCccEEEe-cCccHHHHHHHHHhcCCCCccccCCCCccccc--HHHHHHHHHcCCeEEEeccCCCCCCcCCCCccC
Q 035739 169 SQMLGLTKSIGL-SNFSRKKIETILTFATIPPSINQVEMHPVWQQ--RKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVL 245 (335)
Q Consensus 169 l~~~Gkir~iGv-s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~l~~~~~~gi~v~a~~pl~~~G~l~~~~~~~ 245 (335)
..++|+. .+|+ .+.....+.+++...+++++++=.+-.+++.+ ..++..|+..|+..++.-|-..
T Consensus 6 ~l~~g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~----------- 73 (249)
T TIGR03239 6 DLLARET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNE----------- 73 (249)
T ss_pred HHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCC-----------
Confidence 3344664 3443 44445567777788889888888887777665 5678888889998888776643
Q ss_pred ChHHHHHHHHHhCCCHHHHHHHHHhhcC--CEEEeCCCCHHHHHHhhccccc
Q 035739 246 ENEALKEIAKARGKTVAQVSLRWIVEQG--ATVVIKSLNLERMKQNLGIFDW 295 (335)
Q Consensus 246 ~~~~l~~la~~~g~s~~q~al~~~l~~~--~~vi~g~~~~~~l~enl~a~~~ 295 (335)
...++.+|..| .+++|-..+.+++++.+++..+
T Consensus 74 -----------------~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~ky 108 (249)
T TIGR03239 74 -----------------PVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRY 108 (249)
T ss_pred -----------------HHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 12445666667 5677777788888888777665
No 26
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=82.19 E-value=49 Score=31.82 Aligned_cols=149 Identities=17% Similarity=0.214 Sum_probs=90.8
Q ss_pred ChHHHHHHHHHHHHcCCCEe-eCCCCcCCHHHHHHHHHHHHHcCCCCCCCceEE---eecc-----CCCCCChhhHHHHH
Q 035739 47 DTDALKLVVLEAIKLGYRHF-DTAAMYGTEKALGEAIAEALRLGLVSSREQLFI---TSKL-----WCQNAHRDHVIPAL 117 (335)
Q Consensus 47 ~~~~~~~~l~~A~~~Gin~~-DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~~~i---~tK~-----~~~~~~~~~i~~~~ 117 (335)
+.+.-.+-++.|++.|-..+ |-+ ..|.-..+-+.+-+. ..+ +-..|=| ..+. ...+.+.+.+.+.+
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLS-tggdl~~iR~~il~~--s~v--pvGTVPiYqa~~~~~~k~~~~~~mt~d~~~~~i 149 (431)
T PRK13352 75 DIEEELEKAKVAVKYGADTIMDLS-TGGDLDEIRRAIIEA--SPV--PVGTVPIYQAAVEAARKYGSVVDMTEDDLFDVI 149 (431)
T ss_pred CHHHHHHHHHHHHHcCCCeEeecc-CCCCHHHHHHHHHHc--CCC--CCcChhHHHHHHHHHhcCCChhhCCHHHHHHHH
Confidence 55555677899999997744 555 445443344443321 011 1111100 0011 12356677777777
Q ss_pred HHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCccHHHHHHHHHhcCC
Q 035739 118 KKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSRKKIETILTFATI 197 (335)
Q Consensus 118 e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~ 197 (335)
|+..+ +-+|.+-+|.- =..+.++.+++.|++ .|+-+-...-+.......+
T Consensus 150 e~qa~----~GVDfmTiHcG-----------------------i~~~~~~~~~~~~R~--~giVSRGGs~~~~WM~~n~- 199 (431)
T PRK13352 150 EKQAK----DGVDFMTIHCG-----------------------VTRETLERLKKSGRI--MGIVSRGGSFLAAWMLHNN- 199 (431)
T ss_pred HHHHH----hCCCEEEEccc-----------------------hhHHHHHHHHhcCCc--cCeecCCHHHHHHHHHHcC-
Confidence 77665 56788999974 245778899988854 7887777666665554443
Q ss_pred CCccccCCCCccccc-HHHHHHHHHcCCeEEEeccCCCCCCc
Q 035739 198 PPSINQVEMHPVWQQ-RKLIEFCKAKGIIVTAYSPLGAVGKI 238 (335)
Q Consensus 198 ~~~~~q~~~~~~~~~-~~~l~~~~~~gi~v~a~~pl~~~G~l 238 (335)
.=||+..+ .++++.|+++++.+----.|.. |-+
T Consensus 200 -------~ENPlye~fD~lLeI~~~yDVtlSLGDglRP-G~i 233 (431)
T PRK13352 200 -------KENPLYEHFDYLLEILKEYDVTLSLGDGLRP-GCI 233 (431)
T ss_pred -------CcCchHHHHHHHHHHHHHhCeeeeccCCcCC-Ccc
Confidence 33566665 7899999999998866555544 444
No 27
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=81.25 E-value=23 Score=32.32 Aligned_cols=216 Identities=14% Similarity=0.119 Sum_probs=117.5
Q ss_pred ChHHHHHHHHHHHHcCCCEeeCCCCcC------CHH----HHHHHHHHHH------HcCCCCCCCceEEeeccCCC----
Q 035739 47 DTDALKLVVLEAIKLGYRHFDTAAMYG------TEK----ALGEAIAEAL------RLGLVSSREQLFITSKLWCQ---- 106 (335)
Q Consensus 47 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg------se~----~lG~~l~~~~------~~g~~~~R~~~~i~tK~~~~---- 106 (335)
.++.++++-...+++|-+.++|+ .|. +|+ .+.+.++... ++.+ -.+...|+--+++.
T Consensus 41 ~peiv~~vh~df~~aGa~ii~T~-TYqa~~~~~~e~~~~~~~~~l~~~sv~la~~ard~~--g~~~~~iagsiGP~ga~~ 117 (300)
T COG2040 41 EPEIVRNVHADFLRAGADIITTA-TYQATPEGFAERVSEDEAKQLIRRSVELARAARDAY--GEENQNIAGSLGPYGAAL 117 (300)
T ss_pred CHHHHHHHHHHHHHhcCcEEeeh-hhhcCHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh--cccccccceeccchhhhc
Confidence 35778888888899999999998 675 122 1111111110 0111 23334455555431
Q ss_pred --------CCChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEE
Q 035739 107 --------NAHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSI 178 (335)
Q Consensus 107 --------~~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~i 178 (335)
..+.+.+.+-...-++.|.-.-+|++.+-...... ..+.+.+.+++. +|=-.|
T Consensus 118 a~Ey~g~Y~~~~d~~~~fh~~rie~l~~ag~Dlla~ETip~i~----------------Ea~Aiv~l~~~~---s~p~wI 178 (300)
T COG2040 118 ADEYRGDYGASQDALYKFHRPRIEALNEAGADLLACETLPNIT----------------EAEAIVQLVQEF---SKPAWI 178 (300)
T ss_pred ChhhcCccCccHHHHHHHHHHHHHHHHhCCCcEEeecccCChH----------------HHHHHHHHHHHh---CCceEE
Confidence 22455555556666777776779999888653211 133344555544 888889
Q ss_pred EecCccH------HHHHHHHHhcC-C-CCccccCCCCcccccHHHHHHH--HHcCCeEEEeccCCCCCCcCCCCccCChH
Q 035739 179 GLSNFSR------KKIETILTFAT-I-PPSINQVEMHPVWQQRKLIEFC--KAKGIIVTAYSPLGAVGKIYGSNQVLENE 248 (335)
Q Consensus 179 Gvs~~~~------~~l~~~~~~~~-~-~~~~~q~~~~~~~~~~~~l~~~--~~~gi~v~a~~pl~~~G~l~~~~~~~~~~ 248 (335)
+++-.+. ..+.++..... . .+...-+++..++.-..+++.. +..|+++++|-- + |--+.........
T Consensus 179 SfT~~d~~~lr~Gt~l~eaa~~~~~~~~iaa~gvNC~~p~~~~a~i~~l~~~~~~~piivYPN--S-Ge~~d~~~k~w~~ 255 (300)
T COG2040 179 SFTLNDDTRLRDGTPLSEAAAILAGLPNIAALGVNCCHPDHIPAAIEELSKLLTGKPIIVYPN--S-GEQYDPAGKTWHG 255 (300)
T ss_pred EEEeCCCCccCCCccHHHHHHHHhcCcchhheeeccCChhhhHHHHHHHHhcCCCCceEEcCC--c-ccccCcCCCcCCC
Confidence 9887742 22444444332 2 3455666666666667788888 344788999855 3 4433222111110
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhhcCCEEEeCC--CCHHHHHHhhccc
Q 035739 249 ALKEIAKARGKTVAQVSLRWIVEQGATVVIKS--LNLERMKQNLGIF 293 (335)
Q Consensus 249 ~l~~la~~~g~s~~q~al~~~l~~~~~vi~g~--~~~~~l~enl~a~ 293 (335)
-...+ -+-.+++..|+-. |..+|=|+ +++.|+.+.-+++
T Consensus 256 -p~~~~----~~~~~~a~~w~~~-GA~iiGGCCrt~p~~I~ei~~~~ 296 (300)
T COG2040 256 -PALSA----DSYSTLAKSWVEA-GARIIGGCCRTGPAHIAEIAKAL 296 (300)
T ss_pred -CCCch----hHHHHHHHHHHhc-ccceeeeccCCChHHHHHHHHHH
Confidence 00000 1224667777754 44444443 4677777766554
No 28
>PRK13796 GTPase YqeH; Provisional
Probab=79.54 E-value=39 Score=32.07 Aligned_cols=140 Identities=15% Similarity=0.138 Sum_probs=87.8
Q ss_pred CcceeeCcccCcccccc--CCCChHHHHHHHHHHHHcC---CCEeeCCCCcCC-HHHHHHHHHHHHHcCCCCCCCceEEe
Q 035739 27 PVIGLGCAVDKCLRCAV--DKSDTDALKLVVLEAIKLG---YRHFDTAAMYGT-EKALGEAIAEALRLGLVSSREQLFIT 100 (335)
Q Consensus 27 s~lg~G~~~~~~~~~~~--~~~~~~~~~~~l~~A~~~G---in~~DtA~~Ygs-e~~lG~~l~~~~~~g~~~~R~~~~i~ 100 (335)
..+|--|..+-. ++.. ...+.++..++++..-+.- +-.+|..+.-++ ...+.+.+. .+.-++|.
T Consensus 34 ~~~C~RC~~l~h-y~~~~~~~~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~~---------~kpviLVi 103 (365)
T PRK13796 34 EVYCQRCFRLKH-YNEIQDVSLTDDDFLKLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFVG---------NNPVLLVG 103 (365)
T ss_pred CeEchhhhhhhc-cCcccCCCCCHHHHHHHHHhhcccCcEEEEEEECccCCCchhHHHHHHhC---------CCCEEEEE
Confidence 346666766643 2211 2346677888877776555 446787665553 222222221 45668899
Q ss_pred eccCC--CCCChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEE
Q 035739 101 SKLWC--QNAHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSI 178 (335)
Q Consensus 101 tK~~~--~~~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~i 178 (335)
+|+-. .....+.+.+.++...+.+|....+++.+..... ....++++.+.+..+.+.+-.+
T Consensus 104 NK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g-----------------~gI~eL~~~I~~~~~~~~v~vv 166 (365)
T PRK13796 104 NKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKG-----------------HGIDELLEAIEKYREGRDVYVV 166 (365)
T ss_pred EchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCC-----------------CCHHHHHHHHHHhcCCCeEEEE
Confidence 99842 2223456666667767777865557777764422 2378889999888878889999
Q ss_pred EecCccHHH-HHHHHH
Q 035739 179 GLSNFSRKK-IETILT 193 (335)
Q Consensus 179 Gvs~~~~~~-l~~~~~ 193 (335)
|.+|.+-.. +..++.
T Consensus 167 G~~NvGKSTLiN~L~~ 182 (365)
T PRK13796 167 GVTNVGKSTLINRIIK 182 (365)
T ss_pred cCCCCcHHHHHHHHHh
Confidence 999999555 444543
No 29
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=79.41 E-value=34 Score=33.98 Aligned_cols=129 Identities=11% Similarity=0.087 Sum_probs=77.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCccEEEecCc----cHHHHHHHHHh----cCCCC-ccccCCCCcccccHHHHHHHHHcC
Q 035739 153 DLLPMDYRGVWEAMEESQMLGLTKSIGLSNF----SRKKIETILTF----ATIPP-SINQVEMHPVWQQRKLIEFCKAKG 223 (335)
Q Consensus 153 ~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~----~~~~l~~~~~~----~~~~~-~~~q~~~~~~~~~~~~l~~~~~~g 223 (335)
.+...+.+.+++.++.++++..++.+-+..- +...+.++++. ...++ ...+...+...++.++++.+++.|
T Consensus 218 ~~R~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG 297 (497)
T TIGR02026 218 RYRHRDPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAG 297 (497)
T ss_pred eeecCCHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhC
Confidence 3455668899999999988766888776532 34444444332 11222 223444444444678999999999
Q ss_pred CeEEEeccCCCCCCcCCCCccCChHHHHHHHHHhCCCHHHHHHHHHhhcC----CEEEeCC--CCHHHHHHhhcc
Q 035739 224 IIVTAYSPLGAVGKIYGSNQVLENEALKEIAKARGKTVAQVSLRWIVEQG----ATVVIKS--LNLERMKQNLGI 292 (335)
Q Consensus 224 i~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~g~s~~q~al~~~l~~~----~~vi~g~--~~~~~l~enl~a 292 (335)
+..+..+.=+. ..+.++.+.+.+...-..-+++.+.+.| ...|+|. .+.+.+++.++.
T Consensus 298 ~~~v~iGiES~-----------~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~ 361 (497)
T TIGR02026 298 LVHISLGTEAA-----------AQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQ 361 (497)
T ss_pred CcEEEEccccC-----------CHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHH
Confidence 87666543332 3345555544433333344667777776 4567774 467777777653
No 30
>PRK07945 hypothetical protein; Provisional
Probab=78.99 E-value=57 Score=30.59 Aligned_cols=106 Identities=13% Similarity=0.090 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHcCCCEeeCCCCcC--------CHHHHHHHHHHH--HHcCCCCCCC-ceEEeeccCCCCCChhhHHHHH
Q 035739 49 DALKLVVLEAIKLGYRHFDTAAMYG--------TEKALGEAIAEA--LRLGLVSSRE-QLFITSKLWCQNAHRDHVIPAL 117 (335)
Q Consensus 49 ~~~~~~l~~A~~~Gin~~DtA~~Yg--------se~~lG~~l~~~--~~~g~~~~R~-~~~i~tK~~~~~~~~~~i~~~~ 117 (335)
....+++++|.+.|+..+=.++|.- +...+-+.+.+. +.+. .++ +|++..-+... ++.-....
T Consensus 111 ~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~k---y~~I~Il~GiE~d~~---~~g~~~~~ 184 (335)
T PRK07945 111 SPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEE---LAPFRILTGIEVDIL---DDGSLDQE 184 (335)
T ss_pred CCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHh---cCCceEEEEeEeccc---CCCCcchh
Confidence 4478899999999999875555531 222222222221 1111 223 22222222211 11112223
Q ss_pred HHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEe
Q 035739 118 KKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGL 180 (335)
Q Consensus 118 e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGv 180 (335)
++.|+. .||+ +.-+|+... .+..+..+.|.++.+.+++..+|=
T Consensus 185 ~~~l~~--~D~v-IgSvH~~~~-----------------~~~~~~~~~l~~ai~~~~~dvlgH 227 (335)
T PRK07945 185 PELLDR--LDVV-VASVHSKLR-----------------MDAAAMTRRMLAAVANPHTDVLGH 227 (335)
T ss_pred HHHHHh--CCEE-EEEeecCCC-----------------CCHHHHHHHHHHHhcCCCCeEEec
Confidence 334444 4666 677887522 124456788888888888887773
No 31
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=78.33 E-value=17 Score=34.85 Aligned_cols=79 Identities=15% Similarity=0.066 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHcCCCEeeCCCCcCCHHHHHHHHHHHHHcCCCCCCCceEEeeccCC-CCCChhhHHHHHHHHHHHhCCCc
Q 035739 50 ALKLVVLEAIKLGYRHFDTAAMYGTEKALGEAIAEALRLGLVSSREQLFITSKLWC-QNAHRDHVIPALKKSLSALQMEY 128 (335)
Q Consensus 50 ~~~~~l~~A~~~Gin~~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~-~~~~~~~i~~~~e~sL~~Lg~d~ 128 (335)
....+++.|++.|++++|||.+.-....+.... .+..+.+..-++- +..+.-.....+++-.+ .+++
T Consensus 80 ~~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a----------~~Agit~v~~~G~dPGi~nv~a~~a~~~~~~--~i~s 147 (389)
T COG1748 80 VDLTILKACIKTGVDYVDTSYYEEPPWKLDEEA----------KKAGITAVLGCGFDPGITNVLAAYAAKELFD--EIES 147 (389)
T ss_pred hhHHHHHHHHHhCCCEEEcccCCchhhhhhHHH----------HHcCeEEEcccCcCcchHHHHHHHHHHHhhc--cccE
Confidence 345789999999999999997765532222222 2333455555442 23322223333333222 5899
Q ss_pred cceEEeecCCCC
Q 035739 129 LDLYLVHWPISS 140 (335)
Q Consensus 129 iDl~~lH~p~~~ 140 (335)
||+|..+-|+..
T Consensus 148 i~iy~g~~g~~~ 159 (389)
T COG1748 148 IDIYVGGLGEHG 159 (389)
T ss_pred EEEEEecCCCCC
Confidence 999999998764
No 32
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=78.26 E-value=13 Score=33.12 Aligned_cols=116 Identities=14% Similarity=0.066 Sum_probs=60.2
Q ss_pred CCChHHHHHHHHHHHHcCCCEeeCCCCcCCHHHHH----------------H-HHHHHHHcCCCCCCCceEEeeccCCCC
Q 035739 45 KSDTDALKLVVLEAIKLGYRHFDTAAMYGTEKALG----------------E-AIAEALRLGLVSSREQLFITSKLWCQN 107 (335)
Q Consensus 45 ~~~~~~~~~~l~~A~~~Gin~~DtA~~Ygse~~lG----------------~-~l~~~~~~g~~~~R~~~~i~tK~~~~~ 107 (335)
..+.++..++.+.|-+.||.+|=|.-.-.+-..+- - .|+. ++. ....++|+|=.
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~-~A~----tgkPvIlSTG~---- 122 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEY-IAK----TGKPVILSTGM---- 122 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHH-HHT----T-S-EEEE-TT----
T ss_pred cCCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHH-HHH----hCCcEEEECCC----
Confidence 45778999999999999999997664332111110 0 1111 111 34446676643
Q ss_pred CChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCccHHH
Q 035739 108 AHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSRKK 187 (335)
Q Consensus 108 ~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~ 187 (335)
.+.+.|.++++...++- .-++.++|+...+.. +. .+--+..|..|++.=- --||+|.|+...
T Consensus 123 stl~EI~~Av~~~~~~~---~~~l~llHC~s~YP~-------~~-------e~~NL~~i~~L~~~f~-~~vG~SDHt~g~ 184 (241)
T PF03102_consen 123 STLEEIERAVEVLREAG---NEDLVLLHCVSSYPT-------PP-------EDVNLRVIPTLKERFG-VPVGYSDHTDGI 184 (241)
T ss_dssp --HHHHHHHHHHHHHHC---T--EEEEEE-SSSS---------G-------GG--TTHHHHHHHHST-SEEEEEE-SSSS
T ss_pred CCHHHHHHHHHHHHhcC---CCCEEEEecCCCCCC-------Ch-------HHcChHHHHHHHHhcC-CCEEeCCCCCCc
Confidence 33466777766553333 469999999866432 11 1224566667765533 468999999543
No 33
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=76.63 E-value=49 Score=29.15 Aligned_cols=170 Identities=9% Similarity=0.074 Sum_probs=88.2
Q ss_pred hHHHHHHHHHHHHcCCCEeeCCCCcCCHHHHHHHHHHHHHcCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHHhCCC
Q 035739 48 TDALKLVVLEAIKLGYRHFDTAAMYGTEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSALQME 127 (335)
Q Consensus 48 ~~~~~~~l~~A~~~Gin~~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~~e~sL~~Lg~d 127 (335)
.....+++..|.+.|+..|=.+++...........+.. .+=+++...-+. ....+. ++..+++.. .
T Consensus 15 ~~~~~e~i~~A~~~Gl~~i~itdH~~~~~~~~~~~~~~-------~~i~Il~GiEi~--~~~~~~----~~~~~~~~~-~ 80 (237)
T PRK00912 15 YDTVLRLISEASHLGYSGIALSNHSDKYPESKPELEDL-------LGFEIFRGVEIV--ASNPSK----LRGLVGKFR-K 80 (237)
T ss_pred cchHHHHHHHHHHCCCCEEEEecCcccccchhHHHHHh-------cCCcEEeeEEEe--cCCHHH----HHHHHHhcc-C
Confidence 45678999999999999886666643110000111111 111122222221 122233 333333322 3
Q ss_pred ccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCcc------HHHHHHHHHhcCCCCcc
Q 035739 128 YLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFS------RKKIETILTFATIPPSI 201 (335)
Q Consensus 128 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~------~~~l~~~~~~~~~~~~~ 201 (335)
.+|++.+| |. .+++ ...+.+.+.|.-||-.... ...+.++....++ +
T Consensus 81 ~~d~v~v~-~~--------------------~~~~---~~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~gv---~ 133 (237)
T PRK00912 81 KVDVLAVH-GG--------------------DEKV---NRAACENPRVDILSHPYTKRKDSGINHVLAKEAARNNV---A 133 (237)
T ss_pred cccEEEEe-CC--------------------CHHH---HHHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCCe---E
Confidence 57888898 21 1122 2357778899888865431 1122233332332 4
Q ss_pred ccCCCCcccc------------cHHHHHHHHHcCCeEEEeccCCCCCCcCCCCccCChHHHHHHHHHhCCCHHHH
Q 035739 202 NQVEMHPVWQ------------QRKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLENEALKEIAKARGKTVAQV 264 (335)
Q Consensus 202 ~q~~~~~~~~------------~~~~l~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~g~s~~q~ 264 (335)
+.++++++.. ...++..|++.|+.++.-|--.. +..+........++++.|.+..++
T Consensus 134 lEIn~s~~~~~~~~~r~~~~~~~~~~~~~~~~~g~piiisSdAh~------~~~l~~~~~~~~l~~~~Gl~~~~~ 202 (237)
T PRK00912 134 IEFNLRDILKSRGGRRARTLSNFRDNLALARKYDFPLVLTSGAMS------CYDLRSPREMIALAELFGMEEDEA 202 (237)
T ss_pred EEEEchHhhhhcccHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCc------ccccCCHHHHHHHHHHcCCCHHHH
Confidence 4445544311 14688999999988876432221 123334567788888888776553
No 34
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=76.48 E-value=61 Score=29.60 Aligned_cols=70 Identities=19% Similarity=0.278 Sum_probs=56.0
Q ss_pred cccHHHHHHHHHcCCeEEEeccCCCCCCcCCCCccCChHHHHHHHHHhCC------CHHHHHHHHHhhcC-CEEEeCCCC
Q 035739 210 WQQRKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLENEALKEIAKARGK------TVAQVSLRWIVEQG-ATVVIKSLN 282 (335)
Q Consensus 210 ~~~~~~l~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~g~------s~~q~al~~~l~~~-~~vi~g~~~ 282 (335)
+|+..+.+.+.+-++-++.-++-++ +..+|.++|++.|. ++.++=..|+.... +.+-.|+|+
T Consensus 201 nRQ~Avk~la~~~Dl~iVVG~~nSS-----------Ns~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~~VGvTAGASt 269 (294)
T COG0761 201 NRQDAVKELAPEVDLVIVVGSKNSS-----------NSNRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVKTVGVTAGAST 269 (294)
T ss_pred hHHHHHHHHhhcCCEEEEECCCCCc-----------cHHHHHHHHHHhCCCeEEeCChHhCCHHHhcCccEEEEecCCCC
Confidence 4557788889998888888555544 55789999999986 57888889998876 778899999
Q ss_pred HHHHHHhh
Q 035739 283 LERMKQNL 290 (335)
Q Consensus 283 ~~~l~enl 290 (335)
|+-+-+++
T Consensus 270 Pd~lV~~V 277 (294)
T COG0761 270 PDWLVQEV 277 (294)
T ss_pred CHHHHHHH
Confidence 99887665
No 35
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=75.91 E-value=18 Score=33.00 Aligned_cols=115 Identities=13% Similarity=0.183 Sum_probs=73.6
Q ss_pred HHHHHHHcCCccEEEecCccHHHHHHHHHhcC--CCCccccCCCCcc----cccHHHHHHHHHcCCeEEEeccCCCCCCc
Q 035739 165 AMEESQMLGLTKSIGLSNFSRKKIETILTFAT--IPPSINQVEMHPV----WQQRKLIEFCKAKGIIVTAYSPLGAVGKI 238 (335)
Q Consensus 165 ~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~--~~~~~~q~~~~~~----~~~~~~l~~~~~~gi~v~a~~pl~~~G~l 238 (335)
.++.|....++-.+-=.+.+.+.+.++++... ++..-..+.-.++ .|+..+.+++++-++-++.-+.
T Consensus 146 d~~~l~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~vD~miVVGg~------- 218 (280)
T TIGR00216 146 DLENFKVEDLLGVVSQTTLSQEDTKEIVAELKARVPQKEVPVFNTICYATQNRQDAVKELAPEVDLMIVIGGK------- 218 (280)
T ss_pred HHHhCCCCCcEEEEEcCCCcHHHHHHHHHHHHHhCCCcCCCCCCCcccccHHHHHHHHHHHhhCCEEEEECCC-------
Confidence 34455444555556556666666666555432 2101112222222 3457789999998888777333
Q ss_pred CCCCccCChHHHHHHHHHhCC------CHHHHHHHHHhhcC-CEEEeCCCCHHHHHHhh
Q 035739 239 YGSNQVLENEALKEIAKARGK------TVAQVSLRWIVEQG-ATVVIKSLNLERMKQNL 290 (335)
Q Consensus 239 ~~~~~~~~~~~l~~la~~~g~------s~~q~al~~~l~~~-~~vi~g~~~~~~l~enl 290 (335)
+..+-..|.++|++++. ++.++-..|.-... +.+..|+|+|+.+-+.+
T Consensus 219 ----nSsNT~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~VGiTAGASTP~~li~eV 273 (280)
T TIGR00216 219 ----NSSNTTRLYEIAEEHGPPSYLIETAEELPEEWLKGVKVVGITAGASTPDWIIEEV 273 (280)
T ss_pred ----CCchHHHHHHHHHHhCCCEEEECChHHCCHHHhCCCCEEEEEecCCCCHHHHHHH
Confidence 23355789999999873 68899999998766 78889999998775543
No 36
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=75.16 E-value=68 Score=29.92 Aligned_cols=118 Identities=12% Similarity=0.054 Sum_probs=70.7
Q ss_pred CCChHHHHHHHHHHHHcCCCEeeCCCCcCC---------------------HHHHHHHHHHHHHcCCCCCCCceEEeecc
Q 035739 45 KSDTDALKLVVLEAIKLGYRHFDTAAMYGT---------------------EKALGEAIAEALRLGLVSSREQLFITSKL 103 (335)
Q Consensus 45 ~~~~~~~~~~l~~A~~~Gin~~DtA~~Ygs---------------------e~~lG~~l~~~~~~g~~~~R~~~~i~tK~ 103 (335)
.++.+....+.+.|-+.|+-+|-|--.+.+ ..+|-...+ .-+.+.++|=+
T Consensus 86 ~~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~---------~~kPiIlSTGm 156 (347)
T COG2089 86 ETPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAK---------KGKPIILSTGM 156 (347)
T ss_pred cCCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHh---------cCCCEEEEccc
Confidence 346677788999999999999866554431 222222222 23467777765
Q ss_pred CCCCCChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCc
Q 035739 104 WCQNAHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNF 183 (335)
Q Consensus 104 ~~~~~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~ 183 (335)
.+-+.+.++++...++=. .|+.+||+...+.. +. .+--+.+|..|++.= ---||+|.|
T Consensus 157 ----a~~~ei~~av~~~r~~g~---~~i~LLhC~s~YPa-------p~-------ed~NL~~i~~l~~~F-n~~vGlSDH 214 (347)
T COG2089 157 ----ATIEEIEEAVAILRENGN---PDIALLHCTSAYPA-------PF-------EDVNLKAIPKLAEAF-NAIVGLSDH 214 (347)
T ss_pred ----ccHHHHHHHHHHHHhcCC---CCeEEEEecCCCCC-------CH-------HHhhHHHHHHHHHHh-CCccccccC
Confidence 234677777776555433 39999999865432 11 111344555555443 235999999
Q ss_pred cHHHHHHHHH
Q 035739 184 SRKKIETILT 193 (335)
Q Consensus 184 ~~~~l~~~~~ 193 (335)
+...+.-+..
T Consensus 215 T~g~~a~l~A 224 (347)
T COG2089 215 TLGILAPLAA 224 (347)
T ss_pred ccchhHHHHH
Confidence 9775544433
No 37
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=74.07 E-value=34 Score=30.60 Aligned_cols=100 Identities=13% Similarity=0.072 Sum_probs=65.7
Q ss_pred HHHHHcCCccEEEe-cCccHHHHHHHHHhcCCCCccccCCCCccccc--HHHHHHHHHcCCeEEEeccCCCCCCcCCCCc
Q 035739 167 EESQMLGLTKSIGL-SNFSRKKIETILTFATIPPSINQVEMHPVWQQ--RKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQ 243 (335)
Q Consensus 167 ~~l~~~Gkir~iGv-s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~l~~~~~~gi~v~a~~pl~~~G~l~~~~~ 243 (335)
.+..++|+. -+|+ ...+...+.+.+...+++++++=++-++.+.+ ..++..|+..|..+++.-|-..
T Consensus 4 k~~l~~g~~-~~g~~~~~~~p~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~--------- 73 (249)
T TIGR02311 4 KQALKEGQP-QIGLWLGLADPYAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGD--------- 73 (249)
T ss_pred HHHHHCCCc-eEEEEEeCCCcHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCC---------
Confidence 344455775 3443 33333445555666778888877777776443 3467777777887777755432
Q ss_pred cCChHHHHHHHHHhCCCHHHHHHHHHhhcC--CEEEeCCCCHHHHHHhhccccc
Q 035739 244 VLENEALKEIAKARGKTVAQVSLRWIVEQG--ATVVIKSLNLERMKQNLGIFDW 295 (335)
Q Consensus 244 ~~~~~~l~~la~~~g~s~~q~al~~~l~~~--~~vi~g~~~~~~l~enl~a~~~ 295 (335)
+ .-++.+|..| .+++|-..+++++++.+++..+
T Consensus 74 -----------------~--~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y 108 (249)
T TIGR02311 74 -----------------P--VLIKQLLDIGAQTLLVPMIETAEQAEAAVAATRY 108 (249)
T ss_pred -----------------H--HHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 1 1457788887 6778888899998888888765
No 38
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=73.94 E-value=81 Score=30.15 Aligned_cols=97 Identities=13% Similarity=0.067 Sum_probs=61.4
Q ss_pred HHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCc-cEEEec---CccHHHHHHHHHhcCC
Q 035739 122 SALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLT-KSIGLS---NFSRKKIETILTFATI 197 (335)
Q Consensus 122 ~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gki-r~iGvs---~~~~~~l~~~~~~~~~ 197 (335)
+.+| +|++.||.-..... ..+....+..+..++..+.=.+ --|+=| ..+++.++++++...-
T Consensus 150 ~~~~---aD~Ialr~~S~DP~-----------~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~eVLeaaLe~~~G 215 (389)
T TIGR00381 150 KEFG---ADMVTIHLISTDPK-----------LDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPLVLEKAAEVAEG 215 (389)
T ss_pred HHhC---CCEEEEEecCCCcc-----------ccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHHHHHHHHHHhCC
Confidence 5555 78899997543211 1123355666666666443332 234434 5678899999998764
Q ss_pred -CCccccCCCCcccccHHHHHHHHHcCCeEEEeccCCC
Q 035739 198 -PPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPLGA 234 (335)
Q Consensus 198 -~~~~~q~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~ 234 (335)
.|.++-..... .-.++.+.|+++|..++++++..-
T Consensus 216 ~kpLL~SAt~e~--Ny~~ia~lAk~yg~~Vvv~s~~Di 251 (389)
T TIGR00381 216 ERCLLASANLDL--DYEKIANAAKKYGHVVLSWTIMDI 251 (389)
T ss_pred CCcEEEecCchh--hHHHHHHHHHHhCCeEEEEcCCcH
Confidence 55555433221 226789999999999999988764
No 39
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=73.71 E-value=40 Score=30.46 Aligned_cols=102 Identities=18% Similarity=0.067 Sum_probs=65.7
Q ss_pred hhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCccHHHHH
Q 035739 110 RDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSRKKIE 189 (335)
Q Consensus 110 ~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~ 189 (335)
.+.+.+..++.. .-|-+.||+=.=-.+ ....+.+...++.+++.-.+ -|.+-+++++.++
T Consensus 24 ~~~i~~~A~~~~-~~GAdiIDVg~~~~~------------------~eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~e 83 (261)
T PRK07535 24 AAFIQKLALKQA-EAGADYLDVNAGTAV------------------EEEPETMEWLVETVQEVVDV-PLCIDSPNPAAIE 83 (261)
T ss_pred HHHHHHHHHHHH-HCCCCEEEECCCCCc------------------hhHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHHH
Confidence 455555554443 668899998643111 11144566666666654333 4899999999999
Q ss_pred HHHHhcCCCCccccCCCCcccccHHHHHHHHHcCCeEEEeccC
Q 035739 190 TILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPL 232 (335)
Q Consensus 190 ~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~v~a~~pl 232 (335)
++++.+.-.+.++-+.... .+..++++.++++|..++.+...
T Consensus 84 aaL~~~~G~~iINsIs~~~-~~~~~~~~l~~~~g~~vv~m~~~ 125 (261)
T PRK07535 84 AGLKVAKGPPLINSVSAEG-EKLEVVLPLVKKYNAPVVALTMD 125 (261)
T ss_pred HHHHhCCCCCEEEeCCCCC-ccCHHHHHHHHHhCCCEEEEecC
Confidence 9999854445555444321 22467899999999999986543
No 40
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=73.66 E-value=50 Score=31.53 Aligned_cols=50 Identities=20% Similarity=0.355 Sum_probs=32.8
Q ss_pred ChHHHHHHHHHHHHcCCCEeeCCCCcC-------CHHHHHHHHHHHHHcCCCCCCCceEEeecc
Q 035739 47 DTDALKLVVLEAIKLGYRHFDTAAMYG-------TEKALGEAIAEALRLGLVSSREQLFITSKL 103 (335)
Q Consensus 47 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg-------se~~lG~~l~~~~~~g~~~~R~~~~i~tK~ 103 (335)
+.+++.+.+..|++.| ....|+ +-+.+.+.+...+...+ ..+++|+++-+
T Consensus 79 ts~~a~~Av~~al~Sg-----k~N~Yaps~G~~~AR~AVAeYl~~~l~~kl--~a~DV~ltsGC 135 (447)
T KOG0259|consen 79 TSQEAEQAVVDALRSG-----KGNGYAPSVGILPARRAVAEYLNRDLPNKL--TADDVVLTSGC 135 (447)
T ss_pred CCHHHHHHHHHHHhcC-----CCCCcCCccccHHHHHHHHHHhhcCCCCcc--CcCceEEeccc
Confidence 4467788899999998 334676 34455555544333344 78999998654
No 41
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=72.02 E-value=44 Score=29.64 Aligned_cols=74 Identities=22% Similarity=0.314 Sum_probs=43.9
Q ss_pred CCCCccCCcceeeCcc---cCccccccCCCChHHHHHHHHHH----HHcCCCEeeCCCCcC------CHHHHHHHHH---
Q 035739 20 SSGHLNMPVIGLGCAV---DKCLRCAVDKSDTDALKLVVLEA----IKLGYRHFDTAAMYG------TEKALGEAIA--- 83 (335)
Q Consensus 20 t~g~~~vs~lg~G~~~---~~~~~~~~~~~~~~~~~~~l~~A----~~~Gin~~DtA~~Yg------se~~lG~~l~--- 83 (335)
| | +.+|.+||.+-+ ||+ -+....+++.+++..| .+.|||.|--| .|. ++....+++.
T Consensus 66 t-g-v~ipSmClSaHRRfPfGS----~D~~~r~~aleiM~KaI~LA~dLGIRtIQLA-GYDVYYE~~d~eT~~rFi~g~~ 138 (287)
T COG3623 66 T-G-VRIPSMCLSAHRRFPFGS----KDEATRQQALEIMEKAIQLAQDLGIRTIQLA-GYDVYYEEADEETRQRFIEGLK 138 (287)
T ss_pred h-C-CCccchhhhhhccCCCCC----CCHHHHHHHHHHHHHHHHHHHHhCceeEeec-cceeeeccCCHHHHHHHHHHHH
Confidence 5 8 999999998753 322 1222345666666655 57899999887 332 4555444443
Q ss_pred HHHHcCCCCCCCceEEeecc
Q 035739 84 EALRLGLVSSREQLFITSKL 103 (335)
Q Consensus 84 ~~~~~g~~~~R~~~~i~tK~ 103 (335)
...+-. .+.+|.++.-+
T Consensus 139 ~a~~lA---~~aqV~lAvEi 155 (287)
T COG3623 139 WAVELA---ARAQVMLAVEI 155 (287)
T ss_pred HHHHHH---HhhccEEEeee
Confidence 222111 56677776655
No 42
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=71.29 E-value=85 Score=28.90 Aligned_cols=150 Identities=13% Similarity=0.084 Sum_probs=89.6
Q ss_pred ChHHHHHHHHHHHHcCCCEeeCCCCcCCHHH--HHHHHHHHHHcCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHHh
Q 035739 47 DTDALKLVVLEAIKLGYRHFDTAAMYGTEKA--LGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSAL 124 (335)
Q Consensus 47 ~~~~~~~~l~~A~~~Gin~~DtA~~Ygse~~--lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~~e~sL~~L 124 (335)
+.++..+.++.+.+.|++.|+.--.-..+.. .=+++++ .+ . ++-|.-+... ..+.+.. ..+-+.|+.+
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~g~~~~~d~~~v~~lr~----~~--g--~~~l~vD~n~-~~~~~~A-~~~~~~l~~~ 203 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKLGGDLEDDIERIRAIRE----AA--P--DARLRVDANQ-GWTPEEA-VELLRELAEL 203 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeCCChhhHHHHHHHHHH----hC--C--CCeEEEeCCC-CcCHHHH-HHHHHHHHhc
Confidence 5577778888899999999986421111221 1123343 22 3 5667777743 2333332 2233344444
Q ss_pred CCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcc-EEEecCccHHHHHHHHHhcCCCCcccc
Q 035739 125 QMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTK-SIGLSNFSRKKIETILTFATIPPSINQ 203 (335)
Q Consensus 125 g~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q 203 (335)
+ +.++-.|.. ..-++.+.+|++...|. ..|=+-++...+.++++.... .++|
T Consensus 204 ~-----l~~iEeP~~--------------------~~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~--d~v~ 256 (316)
T cd03319 204 G-----VELIEQPVP--------------------AGDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAY--DGIN 256 (316)
T ss_pred C-----CCEEECCCC--------------------CCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCC--CEEE
Confidence 4 444554422 12355677788777776 456666778888888886554 4566
Q ss_pred CCCCcc---cccHHHHHHHHHcCCeEEEeccCC
Q 035739 204 VEMHPV---WQQRKLIEFCKAKGIIVTAYSPLG 233 (335)
Q Consensus 204 ~~~~~~---~~~~~~l~~~~~~gi~v~a~~pl~ 233 (335)
...... ..-.++..+|+++|+.++..+-+.
T Consensus 257 ~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~~ 289 (316)
T cd03319 257 IKLMKTGGLTEALRIADLARAAGLKVMVGCMVE 289 (316)
T ss_pred EeccccCCHHHHHHHHHHHHHcCCCEEEECchh
Confidence 554433 222688999999999999875554
No 43
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=70.87 E-value=31 Score=31.49 Aligned_cols=107 Identities=10% Similarity=0.088 Sum_probs=68.7
Q ss_pred CCccEEEecCccHHHHHHHHHhcC--CC-Ccc-ccCCCCcccccHHHHHHHHHcCCeEEEeccCCCCCCcCCCCccCChH
Q 035739 173 GLTKSIGLSNFSRKKIETILTFAT--IP-PSI-NQVEMHPVWQQRKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLENE 248 (335)
Q Consensus 173 Gkir~iGvs~~~~~~l~~~~~~~~--~~-~~~-~q~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~ 248 (335)
.++-.+-=.+.+.+.+.++++... ++ ..+ +.+=+--..|+..+.+++++.++-++.-+.- ..+-.
T Consensus 157 ~kv~~vsQTT~~~~~~~~iv~~l~~~~~~~~v~~TIC~aT~~RQ~a~~~La~~vD~miVVGg~~-----------SsNT~ 225 (281)
T PRK12360 157 DKACVVAQTTIIPELWEDILNVIKLKSKELVFFNTICSATKKRQESAKELSKEVDVMIVIGGKH-----------SSNTQ 225 (281)
T ss_pred cCEEEEECCCCcHHHHHHHHHHHHHhCcccccCCCcchhhhhHHHHHHHHHHhCCEEEEecCCC-----------CccHH
Confidence 455555555666666666655432 11 111 1111111234577889999989888774333 23457
Q ss_pred HHHHHHHHhCC------CHHHHHHHHHhhcC-CEEEeCCCCHHHHHHhh
Q 035739 249 ALKEIAKARGK------TVAQVSLRWIVEQG-ATVVIKSLNLERMKQNL 290 (335)
Q Consensus 249 ~l~~la~~~g~------s~~q~al~~~l~~~-~~vi~g~~~~~~l~enl 290 (335)
.|.++|++.+. ++.++-..|+.... +.+..|+|+|+.+-+.+
T Consensus 226 rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~~VGitaGASTP~~li~eV 274 (281)
T PRK12360 226 KLVKICEKNCPNTFHIETADELDLEMLKDYKIIGITAGASTPDWIIEEV 274 (281)
T ss_pred HHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEccCCCCHHHHHHH
Confidence 89999999874 67888889998776 77889999998775544
No 44
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=69.50 E-value=96 Score=28.76 Aligned_cols=129 Identities=15% Similarity=0.174 Sum_probs=68.1
Q ss_pred CCChHHHHHHHHHHHHcCCCEeeCCCCcC---CHHHHHHHHHHHHHcCCCCCCCceEEeeccCCCCCChhhHHHHHHHHH
Q 035739 45 KSDTDALKLVVLEAIKLGYRHFDTAAMYG---TEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSL 121 (335)
Q Consensus 45 ~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg---se~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~~e~sL 121 (335)
..+.+++.++++.+.+.|++.+.-.. | ...-+-+.++..-+.+ .-.++.|+|-... +.+. -+.|
T Consensus 48 ~ls~eei~~~i~~~~~~gi~~I~~tG--GEPll~~~l~~li~~i~~~~---~~~~i~itTNG~l-------l~~~-~~~L 114 (331)
T PRK00164 48 LLSLEEIERLVRAFVALGVRKVRLTG--GEPLLRKDLEDIIAALAALP---GIRDLALTTNGYL-------LARR-AAAL 114 (331)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEEC--CCCcCccCHHHHHHHHHhcC---CCceEEEEcCchh-------HHHH-HHHH
Confidence 45778999999999999998776432 2 1122334444321111 1235777766421 2222 2345
Q ss_pred HHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC----ccEEEecCccHHHHHHHHHhc
Q 035739 122 SALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGL----TKSIGLSNFSRKKIETILTFA 195 (335)
Q Consensus 122 ~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk----ir~iGvs~~~~~~l~~~~~~~ 195 (335)
+..|++.+- +-||..++..- ... .....++.++++++.+++.|. |..+.+...+.+++.++++..
T Consensus 115 ~~agl~~i~-ISlds~~~e~~-----~~i---~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~ 183 (331)
T PRK00164 115 KDAGLDRVN-VSLDSLDPERF-----KAI---TGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWA 183 (331)
T ss_pred HHcCCCEEE-EEeccCCHHHh-----ccC---CCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHH
Confidence 555655432 33444332110 000 012347899999999999885 224444455555666655543
No 45
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=69.13 E-value=65 Score=31.21 Aligned_cols=112 Identities=15% Similarity=0.156 Sum_probs=63.5
Q ss_pred CCcCCHHHHHHHHHHHHHcCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHHhCC-----CccceEEeecCCCCCCCC
Q 035739 70 AMYGTEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSALQM-----EYLDLYLVHWPISSKPGE 144 (335)
Q Consensus 70 ~~Ygse~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~~e~sL~~Lg~-----d~iDl~~lH~p~~~~~~~ 144 (335)
..||.++.|-++|++..+.- +.+-++|.|=+.+. -+-..++...++++. ..+.++.+|.|.....
T Consensus 61 ~V~Gg~~~L~~~i~~~~~~~---~p~~I~v~~tC~~~-----liGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~-- 130 (428)
T cd01965 61 AVFGGEDNLIEALKNLLSRY---KPDVIGVLTTCLTE-----TIGDDVAGFIKEFRAEGPEPADFPVVYASTPSFKGS-- 130 (428)
T ss_pred eeECcHHHHHHHHHHHHHhc---CCCEEEEECCcchh-----hcCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCc--
Confidence 35788888999998875432 44456677665432 233334444444442 2356788888765421
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHH-------HHcCCccEEEecCc---cHHHHHHHHHhcCCCCcc
Q 035739 145 LGFPEPKEDLLPMDYRGVWEAMEES-------QMLGLTKSIGLSNF---SRKKIETILTFATIPPSI 201 (335)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~L~~l-------~~~Gkir~iGvs~~---~~~~l~~~~~~~~~~~~~ 201 (335)
. ......++++|-+. ++.++|--||-++. +.+.+.++++..++++..
T Consensus 131 --------~--~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~ 187 (428)
T cd01965 131 --------H--ETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPII 187 (428)
T ss_pred --------H--HHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEE
Confidence 0 01133344444332 23466777876654 357888899988765433
No 46
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=67.79 E-value=1.1e+02 Score=28.70 Aligned_cols=148 Identities=16% Similarity=0.179 Sum_probs=86.9
Q ss_pred ChHHHHHHHHHHHHcCCCEeeCC--CCcC----CH--HHHHHHHHHHHHcCCCCCCCceEEeeccCCCCCChhhHHHHHH
Q 035739 47 DTDALKLVVLEAIKLGYRHFDTA--AMYG----TE--KALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALK 118 (335)
Q Consensus 47 ~~~~~~~~l~~A~~~Gin~~DtA--~~Yg----se--~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~~e 118 (335)
+.++..+..+++.+.|++.|-.- ..|. .+ ..+=+++++. -.+++.|...... ..+.+...
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~-------~g~~~~l~vDaN~-~~~~~~a~---- 206 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREA-------VGPDVDLMVDANG-RWDLAEAI---- 206 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHh-------hCCCCEEEEECCC-CCCHHHHH----
Confidence 45667778888889999988643 2331 01 1111344442 2345666666532 23333322
Q ss_pred HHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcc-EEEecCccHHHHHHHHHhcCC
Q 035739 119 KSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTK-SIGLSNFSRKKIETILTFATI 197 (335)
Q Consensus 119 ~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~ 197 (335)
+.+++|. ..++.++..|... +.++.+.++++.-.+. ..|=+.++.+.+.++++....
T Consensus 207 ~~~~~l~--~~~i~~iEqP~~~--------------------~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~ 264 (357)
T cd03316 207 RLARALE--EYDLFWFEEPVPP--------------------DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAV 264 (357)
T ss_pred HHHHHhC--ccCCCeEcCCCCc--------------------cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCC
Confidence 3333442 2355566666321 2356677787776565 455666788899999886543
Q ss_pred CCccccCCCCcc---cccHHHHHHHHHcCCeEEEec
Q 035739 198 PPSINQVEMHPV---WQQRKLIEFCKAKGIIVTAYS 230 (335)
Q Consensus 198 ~~~~~q~~~~~~---~~~~~~l~~~~~~gi~v~a~~ 230 (335)
+++|+....+ .+-.++...|+++|+.++..+
T Consensus 265 --d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~ 298 (357)
T cd03316 265 --DIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHG 298 (357)
T ss_pred --CEEecCccccCCHHHHHHHHHHHHHcCCeEeccC
Confidence 4666554433 233688999999999987754
No 47
>PRK07094 biotin synthase; Provisional
Probab=66.96 E-value=67 Score=29.71 Aligned_cols=121 Identities=15% Similarity=0.165 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHHHcCCccEEEecC-----ccHHHHHHHHHhcCCCCccccCCCCcccccHHHHHHHHHcCCeEEEeccC
Q 035739 158 DYRGVWEAMEESQMLGLTKSIGLSN-----FSRKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPL 232 (335)
Q Consensus 158 ~~~~~~~~L~~l~~~Gkir~iGvs~-----~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~v~a~~pl 232 (335)
+.+++.+.++.+++.| ++.+.++. +..+.+.++++...-.+. +.+.+++.....+.+...++.|+..+..+.=
T Consensus 71 s~eei~~~~~~~~~~g-~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~-l~i~~~~g~~~~e~l~~Lk~aG~~~v~~glE 148 (323)
T PRK07094 71 SPEEILECAKKAYELG-YRTIVLQSGEDPYYTDEKIADIIKEIKKELD-VAITLSLGERSYEEYKAWKEAGADRYLLRHE 148 (323)
T ss_pred CHHHHHHHHHHHHHCC-CCEEEEecCCCCCCCHHHHHHHHHHHHccCC-ceEEEecCCCCHHHHHHHHHcCCCEEEeccc
Confidence 5788999999888876 56666642 245666666654432111 1223344334578889999999877664322
Q ss_pred CCCCCcCCCCccCChHHHHHHHHHhCCCHHHH--HHHHHhhcC----CEEEeCC--CCHHHHHHhhccc
Q 035739 233 GAVGKIYGSNQVLENEALKEIAKARGKTVAQV--SLRWIVEQG----ATVVIKS--LNLERMKQNLGIF 293 (335)
Q Consensus 233 ~~~G~l~~~~~~~~~~~l~~la~~~g~s~~q~--al~~~l~~~----~~vi~g~--~~~~~l~enl~a~ 293 (335)
.. ..+.++.+.+ +.+..+. +++++...| ...++|. .+.+++.+.++.+
T Consensus 149 s~-----------~~~~~~~i~~--~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~l 204 (323)
T PRK07094 149 TA-----------DKELYAKLHP--GMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFL 204 (323)
T ss_pred cC-----------CHHHHHHhCC--CCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHHH
Confidence 21 2334444443 3444433 566776666 5677884 5778887776654
No 48
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=66.44 E-value=1.4e+02 Score=29.38 Aligned_cols=117 Identities=15% Similarity=0.083 Sum_probs=61.5
Q ss_pred eCCCCcCCHHHHHHHHHHHHHcCCCCC-CCceEEeeccCCCCCChhhHHHHHHHHHHHhCCC----ccceEEeecCCCCC
Q 035739 67 DTAAMYGTEKALGEAIAEALRLGLVSS-REQLFITSKLWCQNAHRDHVIPALKKSLSALQME----YLDLYLVHWPISSK 141 (335)
Q Consensus 67 DtA~~Ygse~~lG~~l~~~~~~g~~~~-R~~~~i~tK~~~~~~~~~~i~~~~e~sL~~Lg~d----~iDl~~lH~p~~~~ 141 (335)
+..-.||.|+.|-++|++..+.- + .+=++|.|=+.+.-. -+.+..-+++.-++++-+ .+.++.+|.|.+..
T Consensus 63 E~d~VfGG~~~L~~~I~~~~~~~---~~p~~I~V~tTC~~eiI-GDDi~~vv~~~~~~~~~e~~~~~~~vi~v~tpgF~G 138 (454)
T cd01973 63 EDSAVFGGAKRVEEGVLVLARRY---PDLRVIPIITTCSTEII-GDDIEGVIRKLNEALKEEFPDREVHLIPVHTPSFKG 138 (454)
T ss_pred CCceEECcHHHHHHHHHHHHHhc---CCCCEEEEECCchHhhh-ccCHHHHHHHHHhhhhhccCCCCCeEEEeeCCCcCC
Confidence 33446888888899998865432 2 244677776643211 133333333332222111 47889999887642
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHH-HHHH----cCCccEEEecC--ccHHHHHHHHHhcCCCC
Q 035739 142 PGELGFPEPKEDLLPMDYRGVWEAME-ESQM----LGLTKSIGLSN--FSRKKIETILTFATIPP 199 (335)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~L~-~l~~----~Gkir~iGvs~--~~~~~l~~~~~~~~~~~ 199 (335)
. . ......+++++- .+.. +++|--||-.+ .+.+.+.++++..++.+
T Consensus 139 s----------~--~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v 191 (454)
T cd01973 139 S----------M--VTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEA 191 (454)
T ss_pred C----------H--HHHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCE
Confidence 1 0 011222333332 2222 46677786433 23466777888777553
No 49
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=65.96 E-value=28 Score=31.78 Aligned_cols=107 Identities=17% Similarity=0.166 Sum_probs=65.0
Q ss_pred CCccEEEecCccHHHHHHHHHhcC--CCCccccCCCCcc----cccHHHHHHHHHcCCeEEEeccCCCCCCcCCCCccCC
Q 035739 173 GLTKSIGLSNFSRKKIETILTFAT--IPPSINQVEMHPV----WQQRKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLE 246 (335)
Q Consensus 173 Gkir~iGvs~~~~~~l~~~~~~~~--~~~~~~q~~~~~~----~~~~~~l~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~ 246 (335)
+++-.+.=.+++.+...++++... ++-....+.-.++ .|+.++.+++++-++-++.-+.- ..+
T Consensus 155 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~-----------SsN 223 (281)
T PF02401_consen 155 KKVAVVSQTTQSVEKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEVDAMIVIGGKN-----------SSN 223 (281)
T ss_dssp TCEEEEE-TTS-HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT------------HH
T ss_pred CeEEEEEeecccHHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCC-----------Ccc
Confidence 477777778888777666655432 2211211222222 23467888888888777763332 234
Q ss_pred hHHHHHHHHHhCC------CHHHHHHHHHhhcC-CEEEeCCCCHHHHHHhh
Q 035739 247 NEALKEIAKARGK------TVAQVSLRWIVEQG-ATVVIKSLNLERMKQNL 290 (335)
Q Consensus 247 ~~~l~~la~~~g~------s~~q~al~~~l~~~-~~vi~g~~~~~~l~enl 290 (335)
-..|.++|++++. ++.++...|+-... +.+..|+|+|+.+-+.+
T Consensus 224 T~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eV 274 (281)
T PF02401_consen 224 TRKLAEIAKEHGKPTYHIETADELDPEWLKGVKKVGITAGASTPDWIIEEV 274 (281)
T ss_dssp HHHHHHHHHHCTTCEEEESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEeCCccccCHhHhCCCCEEEEEccCCCCHHHHHHH
Confidence 5789999999874 78899999999887 78889999998876554
No 50
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=64.37 E-value=4.6 Score=37.97 Aligned_cols=53 Identities=15% Similarity=0.271 Sum_probs=34.0
Q ss_pred cCCccEEEecCccHHHHHHHHHhcCCCCcc--ccCCCCcccccHHHHHHHHHcCCe
Q 035739 172 LGLTKSIGLSNFSRKKIETILTFATIPPSI--NQVEMHPVWQQRKLIEFCKAKGII 225 (335)
Q Consensus 172 ~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~--~q~~~~~~~~~~~~l~~~~~~gi~ 225 (335)
-|+||++||--++++.+.++....... .. .|..+-+--.+..+++.+++.||+
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e~-dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENEK-DLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccHH-HHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 399999999999999998886654321 12 232222212235677777777765
No 51
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=64.05 E-value=33 Score=30.47 Aligned_cols=98 Identities=17% Similarity=0.151 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC-CccEEEecCccHHHHHHHH
Q 035739 114 IPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLG-LTKSIGLSNFSRKKIETIL 192 (335)
Q Consensus 114 ~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-kir~iGvs~~~~~~l~~~~ 192 (335)
...+-+.|..+|+++|.+-..-.+... | .....++.++++++.+ .++...++......++.+.
T Consensus 21 ~~~i~~~L~~~GV~~IEvg~~~~~~~~-p---------------~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~ 84 (265)
T cd03174 21 KLEIAEALDEAGVDSIEVGSGASPKAV-P---------------QMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERAL 84 (265)
T ss_pred HHHHHHHHHHcCCCEEEeccCcCcccc-c---------------cCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHH
Confidence 344445577899988887765543211 1 0234677888888888 6777677776666677666
Q ss_pred HhcCCCCccccCCCCcc----------------cccHHHHHHHHHcCCeEEEec
Q 035739 193 TFATIPPSINQVEMHPV----------------WQQRKLIEFCKAKGIIVTAYS 230 (335)
Q Consensus 193 ~~~~~~~~~~q~~~~~~----------------~~~~~~l~~~~~~gi~v~a~~ 230 (335)
+. +. ..+++.+... ..-.+.++.+++.|+.+...-
T Consensus 85 ~~-g~--~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 85 EA-GV--DEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred hC-Cc--CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 64 32 2333333322 111467888999999876654
No 52
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=62.90 E-value=30 Score=33.95 Aligned_cols=128 Identities=19% Similarity=0.131 Sum_probs=85.4
Q ss_pred HHHHHHHcCCCEe--eCCCCc----------CCHHHHHHHHHHHHHcCCCCCCCceEEeeccCCCC-CChhhHH------
Q 035739 54 VVLEAIKLGYRHF--DTAAMY----------GTEKALGEAIAEALRLGLVSSREQLFITSKLWCQN-AHRDHVI------ 114 (335)
Q Consensus 54 ~l~~A~~~Gin~~--DtA~~Y----------gse~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~-~~~~~i~------ 114 (335)
-+++..+.|+..+ -||-.| |+-+.+..+-+..+-.. -+..+||++-++.-. ..|..+.
T Consensus 108 ~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~~~---L~G~~~lTaGLGGMgGAQPlA~~mag~v~ 184 (545)
T TIGR01228 108 HFHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFGGS---LKGKWVLTAGLGGMGGAQPLAVTMNGGVS 184 (545)
T ss_pred HHHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcCCC---CceeEEEEeCCCccccccHHHHHHcCceE
Confidence 4456677888865 355444 25566667777665322 478899998886321 1111111
Q ss_pred ----HHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCccHHHHHH
Q 035739 115 ----PALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSRKKIET 190 (335)
Q Consensus 115 ----~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~ 190 (335)
-.-.+.-+|+.+.|+|.+. .+++++++..++.+++|+...||+-..-++.+++
T Consensus 185 i~vEvd~~ri~kR~~~gyld~~~-----------------------~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~ 241 (545)
T TIGR01228 185 IAVEVDESRIDKRLETKYCDEQT-----------------------DSLDEALARAEEAKAEGKPISIGLLGNAAEVLPE 241 (545)
T ss_pred EEEEECHHHHHHHHhcCcceeEc-----------------------CCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHH
Confidence 1123445788888987653 2288999999999999999999999998899999
Q ss_pred HHHhcC-CCCccccCCCC
Q 035739 191 ILTFAT-IPPSINQVEMH 207 (335)
Q Consensus 191 ~~~~~~-~~~~~~q~~~~ 207 (335)
+++..- .++...|...+
T Consensus 242 l~~r~i~pDlvtDQTSaH 259 (545)
T TIGR01228 242 LLKRGVVPDVVTDQTSAH 259 (545)
T ss_pred HHHcCCCCCCcCCCCccc
Confidence 988532 44566777654
No 53
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=62.41 E-value=1.1e+02 Score=31.63 Aligned_cols=149 Identities=17% Similarity=0.159 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHcCCCEeeCCCCcCCHHHHHHHHHHHHHcCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHHhCCCc
Q 035739 49 DALKLVVLEAIKLGYRHFDTAAMYGTEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSALQMEY 128 (335)
Q Consensus 49 ~~~~~~l~~A~~~Gin~~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~~e~sL~~Lg~d~ 128 (335)
+-+.++++.|-+.|++.+- .|. |+--+..-+. +-|+-|+..|..++-.-+-.|.+-+ +..++-++
T Consensus 43 EIaIRvFRa~tEL~~~tvA---iYs-eqD~~sMHRq--------KADEaY~iGk~l~PV~AYL~ideii-~iak~~~v-- 107 (1176)
T KOG0369|consen 43 EIAIRVFRAATELSMRTVA---IYS-EQDRLSMHRQ--------KADEAYLIGKGLPPVGAYLAIDEII-SIAKKHNV-- 107 (1176)
T ss_pred cchhHHHHHHhhhcceEEE---EEe-ccchhhhhhh--------ccccceecccCCCchhhhhhHHHHH-HHHHHcCC--
Confidence 5577899999999999775 774 3322223232 6888899999754432222222222 23333343
Q ss_pred cceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCccHHHH-----HHHHH-hcCCCCccc
Q 035739 129 LDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSRKKI-----ETILT-FATIPPSIN 202 (335)
Q Consensus 129 iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l-----~~~~~-~~~~~~~~~ 202 (335)
|. +| |... - ..|--+..+...+.| |++||=|---.+.+ .+.+. .++++ ++
T Consensus 108 -da--vH-PGYG---------------F--LSErsdFA~av~~AG-i~fiGPspeVi~~mGDKv~AR~~Ai~agVp--vV 163 (1176)
T KOG0369|consen 108 -DA--VH-PGYG---------------F--LSERSDFAQAVQDAG-IRFIGPSPEVIDSMGDKVAARAIAIEAGVP--VV 163 (1176)
T ss_pred -Ce--ec-CCcc---------------c--cccchHHHHHHHhcC-ceEeCCCHHHHHHhhhHHHHHHHHHHcCCC--cc
Confidence 33 44 2111 0 111122233444444 67898654322111 11111 23332 22
Q ss_pred cCCCCcccccHHHHHHHHHcCCeEEEeccCCCCCC
Q 035739 203 QVEMHPVWQQRKLIEFCKAKGIIVTAYSPLGAVGK 237 (335)
Q Consensus 203 q~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~~G~ 237 (335)
---=.|...-.+.++||+++|.+|+-...+++ |.
T Consensus 164 PGTpgPitt~~EA~eF~k~yG~PvI~KAAyGG-GG 197 (1176)
T KOG0369|consen 164 PGTPGPITTVEEALEFVKEYGLPVIIKAAYGG-GG 197 (1176)
T ss_pred CCCCCCcccHHHHHHHHHhcCCcEEEeecccC-CC
Confidence 12222333347899999999999999999987 54
No 54
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=62.38 E-value=39 Score=32.39 Aligned_cols=144 Identities=18% Similarity=0.230 Sum_probs=68.9
Q ss_pred ChHHHHHHHHHHHHcCCCEe-eCCCCcCCHHHHHHHHHHHHHcCCCCCCCceEEee---------ccC-CCCCChhhHHH
Q 035739 47 DTDALKLVVLEAIKLGYRHF-DTAAMYGTEKALGEAIAEALRLGLVSSREQLFITS---------KLW-CQNAHRDHVIP 115 (335)
Q Consensus 47 ~~~~~~~~l~~A~~~Gin~~-DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~~~i~t---------K~~-~~~~~~~~i~~ 115 (335)
+.+.-.+-+..|.+.|-..+ |-+ .-|.-..+-+.+-+ +..+=|.| |-+ ..+.+.+.+.+
T Consensus 74 d~~~E~~K~~~A~~~GADtvMDLS-tggdl~~iR~~il~---------~~~vpvGTVPiYqa~~~~~~~~~~~t~d~~~~ 143 (420)
T PF01964_consen 74 DIEEELEKLKIAEKAGADTVMDLS-TGGDLDEIRRAILE---------NSPVPVGTVPIYQAAIRKGGSIVDMTEDDFFD 143 (420)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEE----STTHHHHHHHHHH---------T-SS-EEE-HHHHHHHHTTT-GGG--HHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcC-CCCCHHHHHHHHHH---------hCCCccccchHHHHHHHhCCChhhCCHHHHHH
Confidence 44555678899999997754 655 33444334444432 22333333 211 23566788888
Q ss_pred HHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCccHHHHHHHHHhc
Q 035739 116 ALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSRKKIETILTFA 195 (335)
Q Consensus 116 ~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~ 195 (335)
.+|+..+ +=+|++-+|.-. ..+.++.+++.|++ .|+-+-...-+....-+.
T Consensus 144 ~ie~qa~----~GVDfmtiH~gi-----------------------t~~~~~~~~~~~R~--~giVSRGGs~l~~WM~~n 194 (420)
T PF01964_consen 144 VIEKQAK----DGVDFMTIHCGI-----------------------TRETLERLKKSGRI--MGIVSRGGSILAAWMLHN 194 (420)
T ss_dssp HHHHHHH----HT--EEEE-TT-------------------------GGGGGGGT--TSS--S----HHHHHHHHHHHHH
T ss_pred HHHHHHH----cCCCEEEEccch-----------------------hHHHHHHHhhhccc--cCccccchHHHHHHHHhc
Confidence 8887765 347889999752 33566777777776 566666655554443333
Q ss_pred CCCCccccCCCCccccc-HHHHHHHHHcCCeEEEeccCCCCCCc
Q 035739 196 TIPPSINQVEMHPVWQQ-RKLIEFCKAKGIIVTAYSPLGAVGKI 238 (335)
Q Consensus 196 ~~~~~~~q~~~~~~~~~-~~~l~~~~~~gi~v~a~~pl~~~G~l 238 (335)
+ .=||+..+ .++++.|+++++.+.---.|.. |-+
T Consensus 195 ~--------~ENPly~~fD~lLeI~k~yDVtLSLGDglRP-G~i 229 (420)
T PF01964_consen 195 G--------KENPLYEHFDRLLEIAKEYDVTLSLGDGLRP-GCI 229 (420)
T ss_dssp T--------S--HHHHTHHHHHHHHTTTT-EEEE--TT---SSG
T ss_pred C--------CcCcHHHhHHHHHHHHHHhCeeEecccccCC-CCc
Confidence 2 22444444 5677777777777765555544 443
No 55
>PRK05414 urocanate hydratase; Provisional
Probab=62.35 E-value=32 Score=33.94 Aligned_cols=128 Identities=21% Similarity=0.162 Sum_probs=85.1
Q ss_pred HHHHHHHcCCCEe--eCCCCc----------CCHHHHHHHHHHHHHcCCCCCCCceEEeeccCCCC-CChhhHH------
Q 035739 54 VVLEAIKLGYRHF--DTAAMY----------GTEKALGEAIAEALRLGLVSSREQLFITSKLWCQN-AHRDHVI------ 114 (335)
Q Consensus 54 ~l~~A~~~Gin~~--DtA~~Y----------gse~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~-~~~~~i~------ 114 (335)
-+++..+.|+..+ =||-.| |+-+.+..+-+..+- |- -+..+||++-++.-. ..|....
T Consensus 117 ~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~-g~--L~G~~~lTaGLGGMgGAQPlA~~mag~v~ 193 (556)
T PRK05414 117 HFNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFG-GD--LAGRLVLTAGLGGMGGAQPLAATMAGAVC 193 (556)
T ss_pred HHHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcC-CC--CceeEEEEecCCccccccHHHHHhcCceE
Confidence 3456667888765 455444 255566666666553 32 478899998886321 1111111
Q ss_pred ----HHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCccHHHHHH
Q 035739 115 ----PALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSRKKIET 190 (335)
Q Consensus 115 ----~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~ 190 (335)
-.-.+.-+|+.+.|+|.+- .+++++++..++.+++|+...||+-..-++.+++
T Consensus 194 i~vEvd~~ri~kR~~~gyld~~~-----------------------~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~ 250 (556)
T PRK05414 194 LAVEVDESRIDKRLRTGYLDEKA-----------------------DDLDEALALAEEAKAAGEPLSIGLLGNAADVLPE 250 (556)
T ss_pred EEEEECHHHHHHHHhCCcceeEc-----------------------CCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHH
Confidence 1123445788888987653 2288999999999999999999999988888999
Q ss_pred HHHhcC-CCCccccCCCC
Q 035739 191 ILTFAT-IPPSINQVEMH 207 (335)
Q Consensus 191 ~~~~~~-~~~~~~q~~~~ 207 (335)
+++..- .++...|...+
T Consensus 251 l~~~~i~pDlvtDQTSaH 268 (556)
T PRK05414 251 LVRRGIRPDLVTDQTSAH 268 (556)
T ss_pred HHHcCCCCCccCcCcccc
Confidence 988642 44556777653
No 56
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=61.75 E-value=39 Score=29.31 Aligned_cols=68 Identities=7% Similarity=0.080 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHH--cCCccEEEecCccHHHHHHHHHhcCCCCccccCCCCcccccHHHHHHHHHcCCeEEEeccC
Q 035739 159 YRGVWEAMEESQM--LGLTKSIGLSNFSRKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPL 232 (335)
Q Consensus 159 ~~~~~~~L~~l~~--~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~v~a~~pl 232 (335)
...+...++.+++ .+. -+.+-++.++.++++++. +.++..+...+.. ..++++.++++|..++++..-
T Consensus 56 ~~rl~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~-g~~~ind~~~~~~---~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 56 MERLVPVLQAIREENPDV--PLSIDTFNPEVAEAALKA-GADIINDISGFED---DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp HHHHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHH-TSSEEEETTTTSS---STTHHHHHHHHTSEEEEESES
T ss_pred HHHHHHHHHHHhccCCCe--EEEEECCCHHHHHHHHHc-CcceEEecccccc---cchhhhhhhcCCCEEEEEecc
Confidence 3345556666665 233 589999999999999998 6665555444433 568999999999999998655
No 57
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=61.74 E-value=1.2e+02 Score=28.22 Aligned_cols=117 Identities=19% Similarity=0.138 Sum_probs=67.1
Q ss_pred HHHHHhCCCccceEEeec-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccE-EEecCc---cHHHHHHHHH
Q 035739 119 KSLSALQMEYLDLYLVHW-PISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKS-IGLSNF---SRKKIETILT 193 (335)
Q Consensus 119 ~sL~~Lg~d~iDl~~lH~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~-iGvs~~---~~~~l~~~~~ 193 (335)
+.-+.+|.|+||+-+.-. |+.. +...++....++...+.=.+-- |..|.. +++.+++.++
T Consensus 83 ~q~~~~GAd~Idl~~~s~dp~~~---------------d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale 147 (319)
T PRK04452 83 KCVEEYGADMITLHLISTDPNGK---------------DKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAE 147 (319)
T ss_pred HHHHHhCCCEEEEECCCCCcccc---------------cchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHH
Confidence 444588988888765332 2110 1224444445555444333333 555533 6889999999
Q ss_pred hcC-CCCccccCCCCcccccHHHHHHHHHcCCeEEEeccCCCCCCcCCCCccCChHHHHHHHHHhCCCHHH
Q 035739 194 FAT-IPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLENEALKEIAKARGKTVAQ 263 (335)
Q Consensus 194 ~~~-~~~~~~q~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~g~s~~q 263 (335)
.++ -++.++-.... +-.++.+.|+++|..|++.++..- .....+...+.++|+++..
T Consensus 148 ~~~g~~pLInSat~e---n~~~i~~lA~~y~~~Vva~s~~Dl----------n~ak~L~~~l~~~Gi~~ed 205 (319)
T PRK04452 148 AAEGERCLLGSAEED---NYKKIAAAAMAYGHAVIAWSPLDI----------NLAKQLNILLTELGVPRER 205 (319)
T ss_pred HhCCCCCEEEECCHH---HHHHHHHHHHHhCCeEEEEcHHHH----------HHHHHHHHHHHHcCCCHHH
Confidence 876 33555543321 226799999999999999876532 1223444555566664433
No 58
>PRK07328 histidinol-phosphatase; Provisional
Probab=61.69 E-value=1.2e+02 Score=27.20 Aligned_cols=120 Identities=17% Similarity=0.141 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHcCCCEeeCCCCcC---------------CHHHHHHHHHHH--HHcCCCCCCCceEEeeccCCCCCChhh
Q 035739 50 ALKLVVLEAIKLGYRHFDTAAMYG---------------TEKALGEAIAEA--LRLGLVSSREQLFITSKLWCQNAHRDH 112 (335)
Q Consensus 50 ~~~~~l~~A~~~Gin~~DtA~~Yg---------------se~~lG~~l~~~--~~~g~~~~R~~~~i~tK~~~~~~~~~~ 112 (335)
...+++++|.+.|+..+=.+++.- +...+-..+++. +.+.+ .+=+|++..-+... + .
T Consensus 19 ~~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y--~~i~Il~GiE~~~~---~-~ 92 (269)
T PRK07328 19 TPEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARF--PDLYVRLGIEADYH---P-G 92 (269)
T ss_pred CHHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHHc--CCCeEEEEEEeccc---C-C
Confidence 367899999999999764443311 111222222221 11111 11134444333221 2 2
Q ss_pred HHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHH----HHHHHHHcCCccEEE
Q 035739 113 VIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWE----AMEESQMLGLTKSIG 179 (335)
Q Consensus 113 i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~L~~l~~~Gkir~iG 179 (335)
-...+++.|++...||+ +.-+|+.....-. .+.....+...+.+++++ .+.++.+.|.+.-+|
T Consensus 93 ~~~~~~~~l~~~~~D~v-igSvH~~~~~~~~---~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlg 159 (269)
T PRK07328 93 TEEFLERLLEAYPFDYV-IGSVHYLGAWGFD---NPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIG 159 (269)
T ss_pred cHHHHHHHHHhCCCCeE-EEEEeecCCcCCC---ChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEee
Confidence 34556667777777777 7788986431100 000000111223344443 577788888887766
No 59
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=61.50 E-value=1.4e+02 Score=27.66 Aligned_cols=69 Identities=16% Similarity=0.271 Sum_probs=52.3
Q ss_pred ccHHHHHHHHHcCCeEEEeccCCCCCCcCCCCccCChHHHHHHHHHhCC------CHHHHHHHHHhhcC-CEEEeCCCCH
Q 035739 211 QQRKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLENEALKEIAKARGK------TVAQVSLRWIVEQG-ATVVIKSLNL 283 (335)
Q Consensus 211 ~~~~~l~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~g~------s~~q~al~~~l~~~-~~vi~g~~~~ 283 (335)
|+.++.+++++.+.-++.-+.-+ .+-..|.++|++.+. ++.++-..|+.... +.+..|+|+|
T Consensus 200 RQ~a~~~La~~vD~miVVGg~~S-----------sNT~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP 268 (298)
T PRK01045 200 RQEAVKELAPQADLVIVVGSKNS-----------SNSNRLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAP 268 (298)
T ss_pred HHHHHHHHHhhCCEEEEECCCCC-----------ccHHHHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCC
Confidence 45778899999888887743332 345789999999873 68899999997666 7788999999
Q ss_pred HHHHHhh
Q 035739 284 ERMKQNL 290 (335)
Q Consensus 284 ~~l~enl 290 (335)
+.+-+.+
T Consensus 269 ~~li~eV 275 (298)
T PRK01045 269 EWLVQEV 275 (298)
T ss_pred HHHHHHH
Confidence 8765443
No 60
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=60.95 E-value=40 Score=30.23 Aligned_cols=172 Identities=17% Similarity=0.201 Sum_probs=96.9
Q ss_pred HHHHHHHHcCC-CEeeCCCCcCCHHHHHHHHHHHHHcCCCCCCC--ceEEeeccCCCCCChhhHHHHHHHHHHHhCCCcc
Q 035739 53 LVVLEAIKLGY-RHFDTAAMYGTEKALGEAIAEALRLGLVSSRE--QLFITSKLWCQNAHRDHVIPALKKSLSALQMEYL 129 (335)
Q Consensus 53 ~~l~~A~~~Gi-n~~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~--~~~i~tK~~~~~~~~~~i~~~~e~sL~~Lg~d~i 129 (335)
+.+..|-+.|. .-+ ...++.++++.... .+. .+.++..+.........+...+.+.+++.+++.-
T Consensus 53 ~Fi~~aE~~gli~~l-------~~~v~~~a~~~~~~-----~~~~~~~~l~iNis~~~l~~~~~~~~l~~~l~~~~~~~~ 120 (256)
T COG2200 53 EFIPLAEETGLIVEL-------GRWVLEEACRQLRT-----WPRAGPLRLAVNLSPVQLRSPGLVDLLLRLLARLGLPPH 120 (256)
T ss_pred HHHHHHHHcCCHHHH-------HHHHHHHHHHHHHh-----hhhcCCceEEEEcCHHHhCCchHHHHHHHHHHHhCCCcc
Confidence 45555556664 111 34456666665421 122 4778877765444446777788888888886543
Q ss_pred ceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCccHH--HHHHHHHhcCCCCccccCCCC
Q 035739 130 DLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSRK--KIETILTFATIPPSINQVEMH 207 (335)
Q Consensus 130 Dl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~--~l~~~~~~~~~~~~~~q~~~~ 207 (335)
-+.+--. +.. .......+...+.+|++.|- .|.+..|+.. .+..+.+ ++|+++-+.-+
T Consensus 121 -~l~lEit-E~~-------------~~~~~~~~~~~l~~L~~~G~--~ialDDFGtG~ssl~~L~~---l~~d~iKID~~ 180 (256)
T COG2200 121 -RLVLEIT-ESA-------------LIDDLDTALALLRQLRELGV--RIALDDFGTGYSSLSYLKR---LPPDILKIDRS 180 (256)
T ss_pred -eEEEEEe-Cch-------------hhcCHHHHHHHHHHHHHCCC--eEEEECCCCCHHHHHHHhh---CCCCeEEECHH
Confidence 2222211 110 01224468889999999993 4778888733 2443333 23333333322
Q ss_pred ccc--------cc--HHHHHHHHHcCCeEEEeccCCCCCCcCCCCccCChHHHHHHHHHhCCCHHHHHHHHHhhcC
Q 035739 208 PVW--------QQ--RKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLENEALKEIAKARGKTVAQVSLRWIVEQG 273 (335)
Q Consensus 208 ~~~--------~~--~~~l~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~g~s~~q~al~~~l~~~ 273 (335)
... +. ..++..|++.|+.|++-+.= .+.-.+...+.|++..| .|.+++|
T Consensus 181 fi~~i~~~~~~~~iv~~iv~la~~l~~~vvaEGVE--------------t~~ql~~L~~~G~~~~Q---Gylf~~P 239 (256)
T COG2200 181 FVRDLETDARDQAIVRAIVALAHKLGLTVVAEGVE--------------TEEQLDLLRELGCDYLQ---GYLFSRP 239 (256)
T ss_pred HHhhcccCcchHHHHHHHHHHHHHCCCEEEEeecC--------------CHHHHHHHHHcCCCeEe---eccccCC
Confidence 221 11 56899999999999995322 23344455566776666 5555554
No 61
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=60.77 E-value=1.3e+02 Score=27.05 Aligned_cols=105 Identities=12% Similarity=0.006 Sum_probs=63.6
Q ss_pred CChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCccHHH
Q 035739 108 AHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSRKK 187 (335)
Q Consensus 108 ~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~ 187 (335)
.+++.+.+..++.++ -|.|+||+=. .|.. ....++.-..+..+++.-.+ -|.|-+++++.
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~----------------~~~~ee~~r~v~~i~~~~~~-piSIDT~~~~v 82 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYGG----------------LDGVSAMKWLLNLLATEPTV-PLMLDSTNWEV 82 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCCC----------------CCHHHHHHHHHHHHHHhcCC-cEEeeCCcHHH
Confidence 455777777777765 4999999854 1211 01122333332333322222 48999999999
Q ss_pred HHHHHHhcCCCCccccCCCCcc-cccHHHHHHHHHcCCeEEEeccC
Q 035739 188 IETILTFATIPPSINQVEMHPV-WQQRKLIEFCKAKGIIVTAYSPL 232 (335)
Q Consensus 188 l~~~~~~~~~~~~~~q~~~~~~-~~~~~~l~~~~~~gi~v~a~~pl 232 (335)
++++++.+.-...++-+..... .+..++++.++++|..++.+..-
T Consensus 83 ~e~aL~~~~G~~iINsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~ 128 (252)
T cd00740 83 IEAGLKCCQGKCVVNSINLEDGEERFLKVARLAKEHGAAVVVLAFD 128 (252)
T ss_pred HHHHHhhCCCCcEEEeCCCCCCccccHHHHHHHHHhCCCEEEeccC
Confidence 9999997432344554443221 12367889999999999987543
No 62
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=60.27 E-value=1.3e+02 Score=26.93 Aligned_cols=152 Identities=16% Similarity=0.152 Sum_probs=86.6
Q ss_pred ChHHHHHHHHHHHHcCCCEeeCCCCcCCHHH--HHHHHHHHHHcCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHHh
Q 035739 47 DTDALKLVVLEAIKLGYRHFDTAAMYGTEKA--LGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSAL 124 (335)
Q Consensus 47 ~~~~~~~~l~~A~~~Gin~~DtA~~Ygse~~--lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~~e~sL~~L 124 (335)
+.++..+.++.+.+.|++.|-.--.-..+.. .=+++++. -.+++-|...... .++.+...+-+ +.|+.+
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg~~~~~d~~~v~~vr~~-------~g~~~~l~vDan~-~~~~~~a~~~~-~~l~~~ 155 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVGRDPARDVAVVAALREA-------VGDDAELRVDANR-GWTPKQAIRAL-RALEDL 155 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCHHHHHHHHHHHHHh-------cCCCCEEEEeCCC-CcCHHHHHHHH-HHHHhc
Confidence 4566677788888999998865322112222 12344442 2335555555432 23333322222 233444
Q ss_pred CCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcc-EEEecCccHHHHHHHHHhcCCCCcccc
Q 035739 125 QMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTK-SIGLSNFSRKKIETILTFATIPPSINQ 203 (335)
Q Consensus 125 g~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q 203 (335)
++.++..|... +-++.+.++++.-.+. ..|=+-++...+.++++.... +++|
T Consensus 156 -----~i~~iEeP~~~--------------------~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~--d~v~ 208 (265)
T cd03315 156 -----GLDYVEQPLPA--------------------DDLEGRAALARATDTPIMADESAFTPHDAFRELALGAA--DAVN 208 (265)
T ss_pred -----CCCEEECCCCc--------------------ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCC--CEEE
Confidence 44556666321 1246667777776555 555566778888888876554 4555
Q ss_pred CCCCccc---ccHHHHHHHHHcCCeEEEeccCCC
Q 035739 204 VEMHPVW---QQRKLIEFCKAKGIIVTAYSPLGA 234 (335)
Q Consensus 204 ~~~~~~~---~~~~~l~~~~~~gi~v~a~~pl~~ 234 (335)
+.....- .-.++...|+++|+.++..+.+.+
T Consensus 209 ~k~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~s 242 (265)
T cd03315 209 IKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIES 242 (265)
T ss_pred EecccccCHHHHHHHHHHHHHcCCcEEecCccch
Confidence 5544332 236789999999999998766543
No 63
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=59.08 E-value=71 Score=30.96 Aligned_cols=75 Identities=21% Similarity=0.286 Sum_probs=40.3
Q ss_pred CCCChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCC--CHHHHHHH-HHHHHHcCCccEEEecC
Q 035739 106 QNAHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPM--DYRGVWEA-MEESQMLGLTKSIGLSN 182 (335)
Q Consensus 106 ~~~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-L~~l~~~Gkir~iGvs~ 182 (335)
+..+.+.+.+.+++.+ .|+.|+|.+|.+-.......... ..++...+. ...+.++. .+.|.+.|. +++|+||
T Consensus 199 P~QT~~~~~~~l~~a~-~l~pdhis~y~L~~~p~t~~~~~---~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeisn 273 (416)
T COG0635 199 PGQTLESLKEDLEQAL-ELGPDHLSLYSLAIEPGTKFAQR---KIKGKALPDEDEKADMYELVEELLEKAGY-RQYEISN 273 (416)
T ss_pred CCCCHHHHHHHHHHHH-hCCCCEEEEeeeecCCCchhhhh---cccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEeech
Confidence 3445667777776665 57799999997653221110000 000000011 12234444 445566677 8999999
Q ss_pred ccH
Q 035739 183 FSR 185 (335)
Q Consensus 183 ~~~ 185 (335)
|..
T Consensus 274 fa~ 276 (416)
T COG0635 274 FAK 276 (416)
T ss_pred hcC
Confidence 985
No 64
>PRK06361 hypothetical protein; Provisional
Probab=58.71 E-value=1.2e+02 Score=26.06 Aligned_cols=184 Identities=14% Similarity=0.094 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHcCCCEeeCCCCcC--CH-HHHH---HHHHHHHHcCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHH
Q 035739 50 ALKLVVLEAIKLGYRHFDTAAMYG--TE-KALG---EAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSA 123 (335)
Q Consensus 50 ~~~~~l~~A~~~Gin~~DtA~~Yg--se-~~lG---~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~~e~sL~~ 123 (335)
...++++.|.+.|+..|=.+++.. +. ..+- +..++. ... ..=+++...-+.. ..++. ...+...+.+
T Consensus 11 ~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~-~~~---~~i~v~~GiE~~~--~~~~~-~~~~~~~~~~ 83 (212)
T PRK06361 11 IPSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEEL-ELY---WDIEVIPGVELTH--VPPKL-IPKLAKKARD 83 (212)
T ss_pred CHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHH-hhc---CCCEEEEEEEEcc--cCchh-hchHHHHHHH
Confidence 467899999999999887776654 11 1111 111111 000 1112333333322 11222 2333345555
Q ss_pred hCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCccHHHHHHHHHhcCCCCcccc
Q 035739 124 LQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSRKKIETILTFATIPPSINQ 203 (335)
Q Consensus 124 Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q 203 (335)
++ .|++.+|......+ . .. ..-.++.+.|.+.-+|=-..-...+.+++...++.+.++-
T Consensus 84 ~~---~~~~svH~~~~~~~--------------~---~~-~~~~~a~~~~~~dvlaHpd~~~~~~~~~~~~~~~~lEin~ 142 (212)
T PRK06361 84 LG---AEIVVVHGETIVEP--------------V---EE-GTNLAAIECEDVDILAHPGLITEEEAELAAENGVFLEITA 142 (212)
T ss_pred CC---CEEEEECCCCcchh--------------h---hh-hhHHHHHhCCCCcEecCcchhhHHHHHHHHHcCeEEEEEC
Confidence 54 56678994321110 0 00 0114567788776655332211223344444443333331
Q ss_pred CCCCcccccHHHHHHHHHcCCeEEEeccCCCCCCcCCCCccCChHHHHHHHHHhCCCHHHHHHHH
Q 035739 204 VEMHPVWQQRKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLENEALKEIAKARGKTVAQVSLRW 268 (335)
Q Consensus 204 ~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~g~s~~q~al~~ 268 (335)
..........++++|++.|+.++.-+.... +......+.+..++++.|.+..++---+
T Consensus 143 -~~~~~~~~~~~l~~a~~~gi~vv~~SDaH~------~~d~~~~~~~~~i~~~~gl~~~~v~~~~ 200 (212)
T PRK06361 143 -RKGHSLTNGHVARIAREAGAPLVINTDTHA------PSDLITYEFARKVALGAGLTEKELEEAL 200 (212)
T ss_pred -CCCcccchHHHHHHHHHhCCcEEEECCCCC------HHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 111112236799999999999877666543 2233345677888888888877754433
No 65
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=58.69 E-value=77 Score=29.00 Aligned_cols=100 Identities=19% Similarity=0.099 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCccHHHHHHH
Q 035739 112 HVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSRKKIETI 191 (335)
Q Consensus 112 ~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~ 191 (335)
.-+..+-+.|.++|+++|++-.++.|.... . ..+.++.+..+.+...++...+. .+...++.+
T Consensus 26 e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p--------------~--~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A 88 (287)
T PRK05692 26 ADKIALIDRLSAAGLSYIEVASFVSPKWVP--------------Q--MADAAEVMAGIQRRPGVTYAALT-PNLKGLEAA 88 (287)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCcCccccc--------------c--cccHHHHHHhhhccCCCeEEEEe-cCHHHHHHH
Confidence 345556677999999999987544442111 1 11235555555544446655554 467888888
Q ss_pred HHhcCCCCccccCCCCcccc--------------cHHHHHHHHHcCCeEEEe
Q 035739 192 LTFATIPPSINQVEMHPVWQ--------------QRKLIEFCKAKGIIVTAY 229 (335)
Q Consensus 192 ~~~~~~~~~~~q~~~~~~~~--------------~~~~l~~~~~~gi~v~a~ 229 (335)
++. +.+.+..-++.|..+. -.+.+++++++|+.+.++
T Consensus 89 ~~~-g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~ 139 (287)
T PRK05692 89 LAA-GADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGY 139 (287)
T ss_pred HHc-CCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 775 3221112222222111 145789999999988643
No 66
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=58.59 E-value=1.1e+02 Score=28.85 Aligned_cols=102 Identities=16% Similarity=0.071 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCccHHHHHH
Q 035739 111 DHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSRKKIET 190 (335)
Q Consensus 111 ~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~ 190 (335)
..-+..+-+.|.++|+++|++-..-.|..... ..+..++++++. +...++..++. .+...++.
T Consensus 67 ~e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPq-------------mad~~ev~~~i~---~~~~~~~~~l~-~n~~die~ 129 (347)
T PLN02746 67 TSVKVELIQRLVSSGLPVVEATSFVSPKWVPQ-------------LADAKDVMAAVR---NLEGARFPVLT-PNLKGFEA 129 (347)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCcCcccccc-------------cccHHHHHHHHH---hccCCceeEEc-CCHHHHHH
Confidence 34556677779999999999874433321110 012345555554 33335555564 47888999
Q ss_pred HHHhcCCCCccccCCCCcccc---------c-----HHHHHHHHHcCCeEEEec
Q 035739 191 ILTFATIPPSINQVEMHPVWQ---------Q-----RKLIEFCKAKGIIVTAYS 230 (335)
Q Consensus 191 ~~~~~~~~~~~~q~~~~~~~~---------~-----~~~l~~~~~~gi~v~a~~ 230 (335)
+++.. .+.+.+-++.+..+. + .+++++|+++|+.+.++-
T Consensus 130 A~~~g-~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~i 182 (347)
T PLN02746 130 AIAAG-AKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYV 182 (347)
T ss_pred HHHcC-cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 88853 222222222222211 1 367899999999886443
No 67
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=57.20 E-value=17 Score=32.95 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=40.4
Q ss_pred ccHHHHHHHHHhcCCCCccccCCCCcccccHHHHHHHHHcCCeEEEeccCCC
Q 035739 183 FSRKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPLGA 234 (335)
Q Consensus 183 ~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~ 234 (335)
|+...+.++++..+++..++-..||+.+. ++.++|++.|+.+++--|+..
T Consensus 201 hD~kr~~el~~~f~ip~~iViNr~~~g~s--~ie~~~~e~gi~il~~IPyd~ 250 (284)
T COG1149 201 HDLKRALELVEHFGIPTGIVINRYNLGDS--EIEEYCEEEGIPILGEIPYDK 250 (284)
T ss_pred hHHHHHHHHHHHhCCceEEEEecCCCCch--HHHHHHHHcCCCeeEECCcch
Confidence 33455667777888888888888877665 899999999999999999965
No 68
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=56.77 E-value=2e+02 Score=28.12 Aligned_cols=124 Identities=9% Similarity=0.065 Sum_probs=63.7
Q ss_pred hhhHHHHHHHHHHHhCCCccceEEeecCCCCCC-CCCCCCCC--CCCCCCCCHHHHHHHHHHHHH-----cCCccEEEec
Q 035739 110 RDHVIPALKKSLSALQMEYLDLYLVHWPISSKP-GELGFPEP--KEDLLPMDYRGVWEAMEESQM-----LGLTKSIGLS 181 (335)
Q Consensus 110 ~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~L~~l~~-----~Gkir~iGvs 181 (335)
+..+.....+.++.-..+.--.+|||-|..... .-+.+... .........+.+.+.++...+ .+.|+.|=+.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~G 121 (449)
T PRK09058 42 AEQLAATWQRLTQQTLRARKRLLYIHIPFCRTHCTFCGFFQNAWNPEAVARYTDALIRELAMEADSPLTQSAPIHAVYFG 121 (449)
T ss_pred hHHHHHHHHHHHhhcCCCCceEEEEEeCCcCCcCCCCCCcCcCCchhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEEC
Confidence 466677777776432223334699998875432 12222111 000001113334444554443 2456655332
Q ss_pred -----CccHHHHHHHHHhcC--CC--C-ccccCCCCcccccHHHHHHHHHcCCeEEEeccCC
Q 035739 182 -----NFSRKKIETILTFAT--IP--P-SINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPLG 233 (335)
Q Consensus 182 -----~~~~~~l~~~~~~~~--~~--~-~~~q~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~ 233 (335)
..+++++.++++... ++ . .-+-++.+|-.-..+.++.+++.|+.-+..+.-.
T Consensus 122 GGTPs~L~~~~l~~ll~~i~~~~~l~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQS 183 (449)
T PRK09058 122 GGTPTALSAEDLARLITALREYLPLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQS 183 (449)
T ss_pred CCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCc
Confidence 234677777776543 11 1 1122344444445789999999998877765443
No 69
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=56.61 E-value=1.4e+02 Score=28.52 Aligned_cols=97 Identities=14% Similarity=0.212 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC-ccEEEecCccHHHHHHH
Q 035739 113 VIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGL-TKSIGLSNFSRKKIETI 191 (335)
Q Consensus 113 i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk-ir~iGvs~~~~~~l~~~ 191 (335)
-+..+-+.|.++|+++|++- +|.. -++-++.++.+.+.|. .+.++++......++.+
T Consensus 27 ~k~~ia~~L~~~GV~~IE~G---~p~~-------------------~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a 84 (378)
T PRK11858 27 EKLAIARMLDEIGVDQIEAG---FPAV-------------------SEDEKEAIKAIAKLGLNASILALNRAVKSDIDAS 84 (378)
T ss_pred HHHHHHHHHHHhCCCEEEEe---CCCc-------------------ChHHHHHHHHHHhcCCCeEEEEEcccCHHHHHHH
Confidence 45556677999999999874 3422 1223555666665553 45556655557788888
Q ss_pred HHhcCCCCccccCCCCcccc--------------cHHHHHHHHHcCCeEEEeccC
Q 035739 192 LTFATIPPSINQVEMHPVWQ--------------QRKLIEFCKAKGIIVTAYSPL 232 (335)
Q Consensus 192 ~~~~~~~~~~~q~~~~~~~~--------------~~~~l~~~~~~gi~v~a~~pl 232 (335)
++. +++...+-+..|.... -.+.+++++++|..|....+.
T Consensus 85 ~~~-g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed 138 (378)
T PRK11858 85 IDC-GVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAED 138 (378)
T ss_pred HhC-CcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 774 3332222223333211 145788999999887664333
No 70
>PLN02489 homocysteine S-methyltransferase
Probab=56.56 E-value=1.7e+02 Score=27.36 Aligned_cols=217 Identities=13% Similarity=0.109 Sum_probs=119.1
Q ss_pred ChHHHHHHHHHHHHcCCCEeeCCCCcC-CH--------------HHHHHHH---HHHHHcCC-------------CCCCC
Q 035739 47 DTDALKLVVLEAIKLGYRHFDTAAMYG-TE--------------KALGEAI---AEALRLGL-------------VSSRE 95 (335)
Q Consensus 47 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg-se--------------~~lG~~l---~~~~~~g~-------------~~~R~ 95 (335)
.++.++++=+..+++|-+.+-|. .|+ +- ++.-.++ ++...+-. ...+.
T Consensus 53 ~Pe~V~~vH~~yl~AGAdvI~Tn-Ty~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~ 131 (335)
T PLN02489 53 SPHLIRKVHLDYLEAGADIIITA-SYQATIQGFESRGLSREESETLLRKSVEIACEARDIFWDKCQKGSTSRPGRELSYR 131 (335)
T ss_pred CHHHHHHHHHHHHHhCCCEEEec-ccccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCC
Confidence 45666777777789999999888 443 21 1222222 11111000 00134
Q ss_pred ceEEeeccCCCC----------------CChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCH
Q 035739 96 QLFITSKLWCQN----------------AHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDY 159 (335)
Q Consensus 96 ~~~i~tK~~~~~----------------~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~ 159 (335)
+++|+.-+++.. .+.+.+.......++.|--..+|++.+-... +.
T Consensus 132 ~~~VaGsiGP~g~~l~~g~ey~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~-------------------~l 192 (335)
T PLN02489 132 PILVAASIGSYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQVLAEAGPDLIAFETIP-------------------NK 192 (335)
T ss_pred CcEEEEEcCCccccccCCcccCCCCccCCCHHHHHHHHHHHHHHHHhCCCCEEEEeccC-------------------Ch
Confidence 577877776421 3457777777777777744669999998652 26
Q ss_pred HHHHHHHHHHHHcC--CccEEEecCcc------HHHHHHHHHhcC--CCCccccCCCCcccccHHHHHHHHHc-CCeEEE
Q 035739 160 RGVWEAMEESQMLG--LTKSIGLSNFS------RKKIETILTFAT--IPPSINQVEMHPVWQQRKLIEFCKAK-GIIVTA 228 (335)
Q Consensus 160 ~~~~~~L~~l~~~G--kir~iGvs~~~------~~~l~~~~~~~~--~~~~~~q~~~~~~~~~~~~l~~~~~~-gi~v~a 228 (335)
.|+..+++.+++.+ +--.+.++..+ ...+.++++... ..+..+-+++.....-..+++..+.. .+.+++
T Consensus 193 ~E~~a~~~~~~~~~~~~p~~iS~t~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGiNC~~p~~~~~~l~~l~~~~~~pl~v 272 (335)
T PLN02489 193 LEAQAYVELLEEENIKIPAWISFNSKDGVNVVSGDSLLECASIADSCKKVVAVGINCTPPRFIHGLILSIRKVTSKPIVV 272 (335)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEEEeCCCCccCCCCcHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHhhcCCcEEE
Confidence 77777777777664 44455665322 112333333321 24566777776433335566666554 677777
Q ss_pred eccCCCCCCcCCCCccCChHHHHHHHHHhCCC---HHHHHHHHHhhcCCEEEeCC--CCHHHHHHhhcccc
Q 035739 229 YSPLGAVGKIYGSNQVLENEALKEIAKARGKT---VAQVSLRWIVEQGATVVIKS--LNLERMKQNLGIFD 294 (335)
Q Consensus 229 ~~pl~~~G~l~~~~~~~~~~~l~~la~~~g~s---~~q~al~~~l~~~~~vi~g~--~~~~~l~enl~a~~ 294 (335)
| |-+ |..+....-... ..++.+ .++.+.+|. ..|+.+|=|+ ++|+|++..-+.++
T Consensus 273 y-PNa--G~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-~~Ga~iIGGCCgt~P~hI~al~~~l~ 332 (335)
T PLN02489 273 Y-PNS--GETYDGEAKEWV-------ESTGVSDEDFVSYVNKWR-DAGASLIGGCCRTTPNTIRAISKALS 332 (335)
T ss_pred E-CCC--CCCCCCccCccc-------CCCCCCHHHHHHHHHHHH-HCCCcEEeeCCCCCHHHHHHHHHHHh
Confidence 6 333 322211000000 012223 346677786 3577666554 68999988776654
No 71
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=56.22 E-value=2.1e+02 Score=28.24 Aligned_cols=115 Identities=10% Similarity=0.084 Sum_probs=68.4
Q ss_pred CCChHHHHHHHHHHHHcCCCEeeCCCCcCCHHHHHHHHHHHHHcCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHHh
Q 035739 45 KSDTDALKLVVLEAIKLGYRHFDTAAMYGTEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSAL 124 (335)
Q Consensus 45 ~~~~~~~~~~l~~A~~~Gin~~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~~e~sL~~L 124 (335)
..+++-.+..++.|.++||..|=..+.-.-.+.+-.+++..-..|. .-++.|+-.. .+.++.+...+.+++ +..+
T Consensus 101 ~ypddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~---~~~~~i~yt~-sp~~t~~y~~~~a~~-l~~~ 175 (468)
T PRK12581 101 HYADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGK---EAQLCIAYTT-SPVHTLNYYLSLVKE-LVEM 175 (468)
T ss_pred CCcchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCC---EEEEEEEEEe-CCcCcHHHHHHHHHH-HHHc
Confidence 3355667788999999999988877766534444444443322242 1123333222 334555666666655 4567
Q ss_pred CCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCcc
Q 035739 125 QMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFS 184 (335)
Q Consensus 125 g~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~ 184 (335)
|. |.+.|-.... ...+.++.+-+..+++...+ -||+-.|+
T Consensus 176 Ga---d~I~IkDtaG----------------~l~P~~v~~Lv~alk~~~~~-pi~~H~Hn 215 (468)
T PRK12581 176 GA---DSICIKDMAG----------------ILTPKAAKELVSGIKAMTNL-PLIVHTHA 215 (468)
T ss_pred CC---CEEEECCCCC----------------CcCHHHHHHHHHHHHhccCC-eEEEEeCC
Confidence 75 4555554322 34467777777777776544 58888887
No 72
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=56.04 E-value=2.1e+02 Score=28.12 Aligned_cols=129 Identities=15% Similarity=0.108 Sum_probs=68.1
Q ss_pred HHHcCCCEe-----eCCCCcCCHHHHHHHHHHHHHcCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHHhCCC----c
Q 035739 58 AIKLGYRHF-----DTAAMYGTEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSALQME----Y 128 (335)
Q Consensus 58 A~~~Gin~~-----DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~~e~sL~~Lg~d----~ 128 (335)
-++.+++.+ +..-.||.++.|-++|++..+..- ..+=++|.|=+.+.-. -+.+..-+++.-++|.-+ .
T Consensus 52 ~~~e~~~~~sT~l~E~dvVfGG~~kL~~aI~~~~~~~~--~p~~I~V~ttC~~eiI-GDDi~~v~~~~~~~~~~e~~~~~ 128 (457)
T TIGR02932 52 HFKENFDIASTSLHEESAVFGGAKRIEEGVLTLARRYP--NLRVIPIITTCSTETI-GDDIEGSIRKVNRALKKEFPDRK 128 (457)
T ss_pred hcCCCCccccccCCCCceEECcHHHHHHHHHHHHHhCC--CCCEEEEECCchHHhh-cCCHHHHHHHHHhhhhhhcCCCC
Confidence 344554444 334468899999999988654320 1244667666543211 233444443332222211 4
Q ss_pred cceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH------HcCCccEEEecCc--cHHHHHHHHHhcCCCCc
Q 035739 129 LDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQ------MLGLTKSIGLSNF--SRKKIETILTFATIPPS 200 (335)
Q Consensus 129 iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~------~~Gkir~iGvs~~--~~~~l~~~~~~~~~~~~ 200 (335)
+.++.+|.|.+.... ......++++|-+.. .+++|--||-.+. +.+.+.++++..++.+.
T Consensus 129 ~~vv~v~tpgF~gs~------------~~G~~~a~~ali~~~~~~~~~~~~~VNii~~~~~~gD~~eik~lL~~~Gl~vn 196 (457)
T TIGR02932 129 IKLVPVHTPSFKGSQ------------VTGYAECVKSVIKTIAAKKGEPSGKLNVFPGWVNPGDVVLLKHYFSEMGVDAN 196 (457)
T ss_pred CeEEEeeCCCCcCcH------------HHHHHHHHHHHHHHHhhccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEE
Confidence 688999988764320 011344444444322 2366777764332 34577888888776543
Q ss_pred c
Q 035739 201 I 201 (335)
Q Consensus 201 ~ 201 (335)
+
T Consensus 197 ~ 197 (457)
T TIGR02932 197 I 197 (457)
T ss_pred E
Confidence 3
No 73
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=55.78 E-value=1.5e+02 Score=26.53 Aligned_cols=100 Identities=12% Similarity=0.109 Sum_probs=61.7
Q ss_pred ChhhHHHHHHHHHHHhCCCccceEE-eecCCCCCCCCCCCCCCCCCCCCCC----HHHHHHHHHHHHHcCCccEEEecCc
Q 035739 109 HRDHVIPALKKSLSALQMEYLDLYL-VHWPISSKPGELGFPEPKEDLLPMD----YRGVWEAMEESQMLGLTKSIGLSNF 183 (335)
Q Consensus 109 ~~~~i~~~~e~sL~~Lg~d~iDl~~-lH~p~~~~~~~~~~~~~~~~~~~~~----~~~~~~~L~~l~~~Gkir~iGvs~~ 183 (335)
+++.+.+..++.+ .-|.++||+=- --+|... ... .+.+...++.+++.-.+ -+.+-++
T Consensus 21 ~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~---------------~i~~~~E~~rl~~~v~~~~~~~~~-plsiDT~ 83 (257)
T TIGR01496 21 SVDKAVAHAERML-EEGADIIDVGGESTRPGAD---------------RVSPEEELNRVVPVIKALRDQPDV-PISVDTY 83 (257)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCC---------------CCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCC
Confidence 3455555554443 45889999921 1112110 111 22366666677666233 3899999
Q ss_pred cHHHHHHHHHhcCCCCccccCCCCcccccHHHHHHHHHcCCeEEEec
Q 035739 184 SRKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYS 230 (335)
Q Consensus 184 ~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~v~a~~ 230 (335)
+++.++++++. +. ..++-+..- . ..++++.++++|..++.+.
T Consensus 84 ~~~vi~~al~~-G~-~iINsis~~--~-~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 84 RAEVARAALEA-GA-DIINDVSGG--Q-DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred CHHHHHHHHHc-CC-CEEEECCCC--C-CchhHHHHHHcCCcEEEEe
Confidence 99999999986 43 344443332 1 4678999999999999964
No 74
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=55.37 E-value=1.6e+02 Score=28.53 Aligned_cols=117 Identities=11% Similarity=0.170 Sum_probs=61.5
Q ss_pred CCCCcCCHHHHHHHHHHHHHcCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHHhCC-CccceEEeecCCCCCCCCCC
Q 035739 68 TAAMYGTEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSALQM-EYLDLYLVHWPISSKPGELG 146 (335)
Q Consensus 68 tA~~Ygse~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~~e~sL~~Lg~-d~iDl~~lH~p~~~~~~~~~ 146 (335)
..-.||.++.|-++|++..+.. +.+=++|.|=+-+. .--+.+..-+++.-++... ..+.++.++.|......
T Consensus 63 ~d~V~Gg~~~L~~ai~~~~~~~---~p~~I~v~ttC~~~-iiGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~gs~--- 135 (435)
T cd01974 63 DAAVFGGQNNLIDGLKNAYAVY---KPDMIAVSTTCMAE-VIGDDLNAFIKNAKNKGSIPADFPVPFANTPSFVGSH--- 135 (435)
T ss_pred CceEECcHHHHHHHHHHHHHhc---CCCEEEEeCCchHh-hhhccHHHHHHHHHHhccCCCCCeEEEecCCCCccCH---
Confidence 3456888889999998865432 44556777665332 1123333333332223211 14788999988654210
Q ss_pred CCCCCCCCCCCCHHHHHHHHH-HHHH-------cCCccEEE-ecCc-c-HHHHHHHHHhcCCCCc
Q 035739 147 FPEPKEDLLPMDYRGVWEAME-ESQM-------LGLTKSIG-LSNF-S-RKKIETILTFATIPPS 200 (335)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~L~-~l~~-------~Gkir~iG-vs~~-~-~~~l~~~~~~~~~~~~ 200 (335)
....+.++++|- .+.. .++|--|| +.+. + .+.+.++++..++.+.
T Consensus 136 ---------~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~ 191 (435)
T cd01974 136 ---------ITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYT 191 (435)
T ss_pred ---------HHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEE
Confidence 011333444443 2222 23455565 2222 2 5788888998886643
No 75
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=54.43 E-value=1e+02 Score=27.82 Aligned_cols=107 Identities=15% Similarity=0.097 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCcc---HHHH
Q 035739 112 HVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFS---RKKI 188 (335)
Q Consensus 112 ~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~---~~~l 188 (335)
..+..+-+.|.++|+++|++-+......... ........+.++.+.++.+ +..+..+++... ...+
T Consensus 20 ~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~----------~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l 88 (266)
T cd07944 20 EFVKAIYRALAAAGIDYVEIGYRSSPEKEFK----------GKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLL 88 (266)
T ss_pred HHHHHHHHHHHHCCCCEEEeecCCCCccccC----------CCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHH
Confidence 4456666779999999999877654321100 0001112456666665543 346666766555 3444
Q ss_pred HHHHHhcCCCCccccCCCCcccccHHHHHHHHHcCCeEEEec
Q 035739 189 ETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYS 230 (335)
Q Consensus 189 ~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~v~a~~ 230 (335)
+.+.+ .+++..-+.+..+.+..-.+.+++++++|+.|...-
T Consensus 89 ~~a~~-~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~ 129 (266)
T cd07944 89 EPASG-SVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNL 129 (266)
T ss_pred HHHhc-CCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEE
Confidence 44433 333322233334433334678999999998776543
No 76
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=54.37 E-value=93 Score=23.57 Aligned_cols=85 Identities=18% Similarity=0.132 Sum_probs=55.8
Q ss_pred HHHHHHc-CCccEEEecCccHHHHHHHHHhcCCC-------------CccccCCCCcccccHHHHHHHHHcCCeEEEecc
Q 035739 166 MEESQML-GLTKSIGLSNFSRKKIETILTFATIP-------------PSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSP 231 (335)
Q Consensus 166 L~~l~~~-Gkir~iGvs~~~~~~l~~~~~~~~~~-------------~~~~q~~~~~~~~~~~~l~~~~~~gi~v~a~~p 231 (335)
+..+.+. ..++-+|+++-+++..+.+.+..+++ ++++- -..+...+.++...|-++|+.|+.=.|
T Consensus 16 ~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~-I~tp~~~h~~~~~~~l~~g~~v~~EKP 94 (120)
T PF01408_consen 16 LRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVI-IATPPSSHAEIAKKALEAGKHVLVEKP 94 (120)
T ss_dssp HHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEE-EESSGGGHHHHHHHHHHTTSEEEEESS
T ss_pred HHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEE-EecCCcchHHHHHHHHHcCCEEEEEcC
Confidence 4455555 67788899998887777665554432 11110 011223347889999999999999999
Q ss_pred CCCCCCcCCCCccCChHHHHHHHHHhCC
Q 035739 232 LGAVGKIYGSNQVLENEALKEIAKARGK 259 (335)
Q Consensus 232 l~~~G~l~~~~~~~~~~~l~~la~~~g~ 259 (335)
++. ...+..++.+++++.|.
T Consensus 95 ~~~--------~~~~~~~l~~~a~~~~~ 114 (120)
T PF01408_consen 95 LAL--------TLEEAEELVEAAKEKGV 114 (120)
T ss_dssp SSS--------SHHHHHHHHHHHHHHTS
T ss_pred CcC--------CHHHHHHHHHHHHHhCC
Confidence 985 33345677777887765
No 77
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=54.24 E-value=1.2e+02 Score=29.82 Aligned_cols=126 Identities=15% Similarity=0.198 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHcCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCC
Q 035739 77 ALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLP 156 (335)
Q Consensus 77 ~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~ 156 (335)
-+|.+|+ .+.+++|+..+...+.....+..-+.+.+++-++.. .-+.|.--.. +.
T Consensus 343 dlG~~L~---------~~~~l~VsINl~a~Dl~s~rli~~~~~~l~~~~v~p-qQI~lElTER---------------~f 397 (524)
T COG4943 343 DLGDLLR---------QHRDLHVSINLSASDLASPRLIDRLNRKLAQYQVRP-QQIALELTER---------------TF 397 (524)
T ss_pred HhHHHHH---------hCcceEEEEeeeehhhcCchHHHHHHHHHHhcCcCh-HHheeehhhh---------------hh
Confidence 3566666 467789998887777777788888888888877632 1111211000 02
Q ss_pred CCHHHHHHHHHHHHHcCCccEEEecCccHH--HHHHHHH----hcCCCCccccC-CCCcccc--cHHHHHHHHHcCCeEE
Q 035739 157 MDYRGVWEAMEESQMLGLTKSIGLSNFSRK--KIETILT----FATIPPSINQV-EMHPVWQ--QRKLIEFCKAKGIIVT 227 (335)
Q Consensus 157 ~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~--~l~~~~~----~~~~~~~~~q~-~~~~~~~--~~~~l~~~~~~gi~v~ 227 (335)
.+.......+.++++.|.- |=+-.|+.. .|..+.+ ..+++=++++. .++.... -..+++.||..|+.++
T Consensus 398 ~D~~~~~~iI~r~ReaG~~--IyIDDFGTGYSnL~YLq~L~VDaLKIDKsFvdtlg~~~a~~~I~~hII~MAk~L~L~iV 475 (524)
T COG4943 398 ADPKKMTPIILRLREAGHE--IYIDDFGTGYSNLHYLQSLPVDALKIDKSFVDTLGTDSASHLIAPHIIEMAKSLGLKIV 475 (524)
T ss_pred cCchhhhHHHHHHHhcCCe--EEEccCcCcchhHHHHhhCCccceeccHHHHHhhccCcccchhHHHHHHHHHHcCCcEE
Confidence 3355567788999999984 445555422 2222211 11222122221 1111100 1568999999999999
Q ss_pred Ee
Q 035739 228 AY 229 (335)
Q Consensus 228 a~ 229 (335)
+=
T Consensus 476 aE 477 (524)
T COG4943 476 AE 477 (524)
T ss_pred ee
Confidence 85
No 78
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=53.40 E-value=1.6e+02 Score=26.50 Aligned_cols=105 Identities=14% Similarity=0.092 Sum_probs=62.0
Q ss_pred hhhHHHHHHHHHHHhCCCccceEE-eecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCccHHHH
Q 035739 110 RDHVIPALKKSLSALQMEYLDLYL-VHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSRKKI 188 (335)
Q Consensus 110 ~~~i~~~~e~sL~~Lg~d~iDl~~-lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l 188 (335)
.+.+.+..++.+ +-|-+.||+=. -.+|...... .....+.+...++.+++.-.+. +.+-+++++.+
T Consensus 23 ~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~-----------~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~ 89 (257)
T cd00739 23 LDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVS-----------VEEELERVIPVLEALRGELDVL-ISVDTFRAEVA 89 (257)
T ss_pred HHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCC-----------HHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHH
Confidence 344444444333 45788888853 2234321100 0111333444566676663443 89999999999
Q ss_pred HHHHHhcCCCCccccCCCCcccccHHHHHHHHHcCCeEEEecc
Q 035739 189 ETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSP 231 (335)
Q Consensus 189 ~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~v~a~~p 231 (335)
+++++.. ...+|-+ +....+.++++.++++|..++.+..
T Consensus 90 e~al~~G--~~iINdi--sg~~~~~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 90 RAALEAG--ADIINDV--SGGSDDPAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred HHHHHhC--CCEEEeC--CCCCCChHHHHHHHHcCCCEEEECC
Confidence 9999874 2344433 3332226889999999999999643
No 79
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=51.62 E-value=47 Score=32.78 Aligned_cols=129 Identities=18% Similarity=0.079 Sum_probs=74.8
Q ss_pred HHHHHHHHcCCCEe--eCCCCcC----------CHHHHHHHHHHHHHcCCCCCCCceEEeeccCCCCC-ChhhH------
Q 035739 53 LVVLEAIKLGYRHF--DTAAMYG----------TEKALGEAIAEALRLGLVSSREQLFITSKLWCQNA-HRDHV------ 113 (335)
Q Consensus 53 ~~l~~A~~~Gin~~--DtA~~Yg----------se~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~-~~~~i------ 113 (335)
+-+++..+.|+..+ =||-.|. +-+.+..+-+..+-.. -+..+||++-++.-.. .|...
T Consensus 106 e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g~~---L~Gk~~lTaGLGGMgGAQplA~~m~g~v 182 (546)
T PF01175_consen 106 EHFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFGGD---LAGKLFLTAGLGGMGGAQPLAATMAGGV 182 (546)
T ss_dssp HHHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHSTTS----TT-EEEEE--STTCCHHHHHHHHTT-E
T ss_pred HHHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcCCC---CcceEEEEecccccccchHHHHHhcCce
Confidence 34566778898866 4555552 3445566666655433 5888999998864211 00000
Q ss_pred ----HHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCccHHHHH
Q 035739 114 ----IPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSRKKIE 189 (335)
Q Consensus 114 ----~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~ 189 (335)
.-.-++.-+|+.+.|+|.+.= +++++++..++.+++|+...||+-..-.+.++
T Consensus 183 ~l~vEvd~~ri~kR~~~g~ld~~~~-----------------------~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~ 239 (546)
T PF01175_consen 183 GLIVEVDPSRIEKRLEQGYLDEVTD-----------------------DLDEALARAKEARAKKEPLSIGLLGNAADLWE 239 (546)
T ss_dssp EEEEES-HHHHHHHHHTTSSSEEES-----------------------SHHHHHHHHHHHHHTT--EEEEEES-HHHHHH
T ss_pred EEEEEECHHHHHHHHhCCCeeEEcC-----------------------CHHHHHHHHHHhhccCCeeEEEEeccHHHHHH
Confidence 011234456788889887642 28999999999999999999999998888899
Q ss_pred HHHHhcC-CCCccccCCCC
Q 035739 190 TILTFAT-IPPSINQVEMH 207 (335)
Q Consensus 190 ~~~~~~~-~~~~~~q~~~~ 207 (335)
++++..- .++..-|...+
T Consensus 240 ~l~~~~i~pDl~tDQTS~H 258 (546)
T PF01175_consen 240 ELVERGIIPDLVTDQTSAH 258 (546)
T ss_dssp HHHHTT---SEE---SSTT
T ss_pred HHHHcCCCCCcccCCCccc
Confidence 9888643 34455777654
No 80
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=49.86 E-value=1.2e+02 Score=26.64 Aligned_cols=132 Identities=8% Similarity=0.095 Sum_probs=72.2
Q ss_pred HHHHHHHHhcCCCCccccCCCCcccccHHHHHHHHHcCCeEEEeccCCCCCCcCCCCccCChHHHHHHHHHhCC------
Q 035739 186 KKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLENEALKEIAKARGK------ 259 (335)
Q Consensus 186 ~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~g~------ 259 (335)
..+....+..++|....+++-..-....++....++.|+.-++++.+.. . .....+..+|++.|+
T Consensus 48 ~~~~~qA~algiPl~~~~~~~~~e~~~~~l~~~l~~~gv~~vv~GdI~s-~--------~qr~~~e~vc~~~gl~~~~PL 118 (222)
T TIGR00289 48 HLTDLVAEAVGIPLIKLYTSGEEEKEVEDLAGQLGELDVEALCIGAIES-N--------YQKSRIDKVCRELGLKSIAPL 118 (222)
T ss_pred HHHHHHHHHcCCCeEEEEcCCchhHHHHHHHHHHHHcCCCEEEECcccc-H--------HHHHHHHHHHHHcCCEEeccc
Confidence 3444445555665444443321111115667777888887777766653 1 123566778887663
Q ss_pred ---CHHHHHHHHHhhcC-CEEEeCCCCHHHHHHhhccccccCCHHHHHHHhccCCC--CccCCcc-----ccCCCCCccc
Q 035739 260 ---TVAQVSLRWIVEQG-ATVVIKSLNLERMKQNLGIFDWKLTDDDYDKINQIPQH--RLIPSDF-----WVSPQGPFKT 328 (335)
Q Consensus 260 ---s~~q~al~~~l~~~-~~vi~g~~~~~~l~enl~a~~~~L~~~~~~~l~~~~~~--~~~~~~~-----~~~~~~~~~~ 328 (335)
++.++ +.+ +..| .++|+.+... .|.+. -++..|+.+.++.|.++.+. ...+|+. ++--.|-|+.
T Consensus 119 W~~d~~~l-~e~-i~~Gf~aiIv~v~~~-gL~~~--~LGr~id~~~~~~L~~l~~~~gid~~GEgGEyhT~V~d~PlF~~ 193 (222)
T TIGR00289 119 WHADPEKL-MYE-VAEKFEVIIVSVSAM-GLDES--WLGRRIDKECIDDLKRLNEKYGIHLAFEGGEAETLVLDAPLFKK 193 (222)
T ss_pred cCCCHHHH-HHH-HHcCCeEEEEEEccC-CCChH--HcCCccCHHHHHHHHHHHhhcCccccCCCceEEEEEEeccccCc
Confidence 55555 465 4778 5666665543 33322 34568998888888765443 2333322 4444456665
Q ss_pred ccc
Q 035739 329 LEE 331 (335)
Q Consensus 329 ~~~ 331 (335)
.++
T Consensus 194 ~i~ 196 (222)
T TIGR00289 194 RIE 196 (222)
T ss_pred cee
Confidence 543
No 81
>PLN02444 HMP-P synthase
Probab=49.81 E-value=2.9e+02 Score=27.91 Aligned_cols=144 Identities=10% Similarity=0.050 Sum_probs=82.3
Q ss_pred ChHHHHHHHHHHHHcCCCE-eeCCCCcCCHHHHHHHHHHHHHcCCCCCCCceE---Eeecc--CCCCCChhhHHHHHHHH
Q 035739 47 DTDALKLVVLEAIKLGYRH-FDTAAMYGTEKALGEAIAEALRLGLVSSREQLF---ITSKL--WCQNAHRDHVIPALKKS 120 (335)
Q Consensus 47 ~~~~~~~~l~~A~~~Gin~-~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~~~---i~tK~--~~~~~~~~~i~~~~e~s 120 (335)
+.++-.+-+..|.+.|-.. .|-+ ..|.-..+-+++-+. ..+ +-..|= ..-|+ ...+.+.+.+.+.+++.
T Consensus 235 ~ie~EveK~~~A~~~GADTvMDLS-TGgdi~~iR~~Il~~--spv--PVGTVPIYqA~~~~~~~~~~lt~d~~~d~ieeQ 309 (642)
T PLN02444 235 SIEEEVYKLQWATMWGADTVMDLS-TGRHIHETREWILRN--SPV--PVGTVPIYQALEKVDGIAENLTWEVFRETLIEQ 309 (642)
T ss_pred CHHHHHHHHHHHHHcCCCeEeecc-CCCCHHHHHHHHHHc--CCC--CccCccHHHHHHHhcCChhhCCHHHHHHHHHHH
Confidence 5555567789999999764 4655 445444344443321 011 111110 11122 12345667777777766
Q ss_pred HHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCccHHHHHHHHHhcCCCCc
Q 035739 121 LSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSRKKIETILTFATIPPS 200 (335)
Q Consensus 121 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~ 200 (335)
.+ +-+|.+-||.- -..+.++.++ + |..|+-+-...-+....-...
T Consensus 310 ae----qGVDfmTIH~G-----------------------v~~~~v~~~~--~--R~tgIVSRGGSi~a~Wml~~~---- 354 (642)
T PLN02444 310 AE----QGVDYFTIHAG-----------------------VLLRYIPLTA--K--RMTGIVSRGGSIHAKWCLAYH---- 354 (642)
T ss_pred HH----hCCCEEEEChh-----------------------hHHHHHHHHh--C--cccCceeCCcHHHHHHHHHcC----
Confidence 54 45677999964 1344555554 3 678887777666655544332
Q ss_pred cccCCCCccccc-HHHHHHHHHcCCeEEEeccCCC
Q 035739 201 INQVEMHPVWQQ-RKLIEFCKAKGIIVTAYSPLGA 234 (335)
Q Consensus 201 ~~q~~~~~~~~~-~~~l~~~~~~gi~v~a~~pl~~ 234 (335)
.=|++..+ .++++.|++++|.+----.|..
T Consensus 355 ----kENPlYe~FD~ileI~k~YDVtlSLGDGLRP 385 (642)
T PLN02444 355 ----KENFAYEHWDDILDICNQYDIALSIGDGLRP 385 (642)
T ss_pred ----CcCchHHHHHHHHHHHHHhCeeeeccCCcCC
Confidence 23455555 7899999999998865444443
No 82
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=49.80 E-value=2.3e+02 Score=26.64 Aligned_cols=24 Identities=4% Similarity=0.057 Sum_probs=21.1
Q ss_pred CChHHHHHHHHHHHHcCCCEeeCC
Q 035739 46 SDTDALKLVVLEAIKLGYRHFDTA 69 (335)
Q Consensus 46 ~~~~~~~~~l~~A~~~Gin~~DtA 69 (335)
.+.++..++++..-+.||..|+.+
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 467888999999999999999994
No 83
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=49.75 E-value=2.2e+02 Score=26.46 Aligned_cols=107 Identities=14% Similarity=0.105 Sum_probs=58.4
Q ss_pred CCChHHHHHHHHHHHHcCCCEeeCCCCcCCHHH----HHHHHHHHHHcCCCCCCCceEEeeccCCCCCChhhHHHHHHHH
Q 035739 45 KSDTDALKLVVLEAIKLGYRHFDTAAMYGTEKA----LGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKS 120 (335)
Q Consensus 45 ~~~~~~~~~~l~~A~~~Gin~~DtA~~Ygse~~----lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~~e~s 120 (335)
..+.+++.++++.+.+.|+..|-- .|-|.. +-+.++..-+.+ ...++.|+|-.. .+.+ .-+.
T Consensus 44 ~ls~eei~~li~~~~~~Gv~~I~~---tGGEPllr~dl~~li~~i~~~~---~l~~i~itTNG~-------ll~~-~~~~ 109 (329)
T PRK13361 44 VLSLEELAWLAQAFTELGVRKIRL---TGGEPLVRRGCDQLVARLGKLP---GLEELSLTTNGS-------RLAR-FAAE 109 (329)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEE---ECcCCCccccHHHHHHHHHhCC---CCceEEEEeChh-------HHHH-HHHH
Confidence 467889999999999999987764 343332 223333221111 122566666531 1222 4455
Q ss_pred HHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 035739 121 LSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGL 174 (335)
Q Consensus 121 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk 174 (335)
|+..|++++- +-|+..++..- ... .....++.+++.++.+++.|.
T Consensus 110 L~~aGl~~v~-ISlDs~~~e~~-----~~i---~~~g~~~~vl~~i~~~~~~Gi 154 (329)
T PRK13361 110 LADAGLKRLN-ISLDTLRPELF-----AAL---TRNGRLERVIAGIDAAKAAGF 154 (329)
T ss_pred HHHcCCCeEE-EEeccCCHHHh-----hhh---cCCCCHHHHHHHHHHHHHcCC
Confidence 6777877654 34444432110 000 012347788888888888774
No 84
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=49.69 E-value=75 Score=30.20 Aligned_cols=88 Identities=18% Similarity=0.195 Sum_probs=49.6
Q ss_pred HHHHHHHHHHcCCccEEEecCccHHHHHHHHHhcCCCCccccCCCCccccc--HHHHHHHHHcCCeEEEeccCCCCCCcC
Q 035739 162 VWEAMEESQMLGLTKSIGLSNFSRKKIETILTFATIPPSINQVEMHPVWQQ--RKLIEFCKAKGIIVTAYSPLGAVGKIY 239 (335)
Q Consensus 162 ~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~l~~~~~~gi~v~a~~pl~~~G~l~ 239 (335)
-..++.+|.+.|.+.+|-.-.-..-.+..+.....-.|. --|.+...+ +.+++.|+++||.|+.-+ |.+
T Consensus 11 ~~~a~~~l~~~g~~d~l~~d~LaE~tma~~~~~~~~~p~---~gY~~~~~~~L~~~L~~~~~~gIkvI~Na-----Gg~- 81 (362)
T PF07287_consen 11 RPDAAVRLARGGDVDYLVGDYLAERTMAILARAKRKDPT---KGYAPDFVRDLRPLLPAAAEKGIKVITNA-----GGL- 81 (362)
T ss_pred cHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHhhCCC---CCchHHHHHHHHHHHHHHHhCCCCEEEeC-----CCC-
Confidence 346677788899999997755443222222211111111 123333332 678999999999998852 222
Q ss_pred CCCccCChHHHHHHHHHhCCC
Q 035739 240 GSNQVLENEALKEIAKARGKT 260 (335)
Q Consensus 240 ~~~~~~~~~~l~~la~~~g~s 260 (335)
+.....+.+++++++.|.+
T Consensus 82 --np~~~a~~v~eia~e~Gl~ 100 (362)
T PF07287_consen 82 --NPAGCADIVREIARELGLS 100 (362)
T ss_pred --CHHHHHHHHHHHHHhcCCC
Confidence 1112345677777776653
No 85
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=49.55 E-value=1.9e+02 Score=26.88 Aligned_cols=76 Identities=13% Similarity=0.062 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHcCCccEEEecC---------ccHHHHHHHHHhcCCCCccccCCCCccc---c-cHHHHHHHHHcCCe
Q 035739 159 YRGVWEAMEESQMLGLTKSIGLSN---------FSRKKIETILTFATIPPSINQVEMHPVW---Q-QRKLIEFCKAKGII 225 (335)
Q Consensus 159 ~~~~~~~L~~l~~~Gkir~iGvs~---------~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~-~~~~l~~~~~~gi~ 225 (335)
...+.+-++.+++.|.++.+.+.+ .+.+.++.+ ...+.. ..+.++.+-.. . ..+.++.+++.||.
T Consensus 152 ~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L-~~~g~~-v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~ 229 (321)
T TIGR03822 152 PRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAAL-KTSGKT-VYVALHANHARELTAEARAACARLIDAGIP 229 (321)
T ss_pred HHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHH-HHcCCc-EEEEecCCChhhcCHHHHHHHHHHHHcCCE
Confidence 456777788888888887666644 233334433 334422 23333333211 1 14578889999999
Q ss_pred EEEeccCCCCCC
Q 035739 226 VTAYSPLGAVGK 237 (335)
Q Consensus 226 v~a~~pl~~~G~ 237 (335)
+....++.. |.
T Consensus 230 v~~q~vLl~-gv 240 (321)
T TIGR03822 230 MVSQSVLLR-GV 240 (321)
T ss_pred EEEEeeEeC-CC
Confidence 999888876 53
No 86
>PRK06740 histidinol-phosphatase; Validated
Probab=48.50 E-value=2.3e+02 Score=26.45 Aligned_cols=61 Identities=21% Similarity=0.229 Sum_probs=33.8
Q ss_pred HHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCC----HHHHHHHHHHHHHcCCccEEE
Q 035739 115 PALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMD----YRGVWEAMEESQMLGLTKSIG 179 (335)
Q Consensus 115 ~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~----~~~~~~~L~~l~~~Gkir~iG 179 (335)
..+++.|+....||+ +.-+|+.....- ..+...+.+...+ ...-++.+.++.+.|.+..||
T Consensus 156 ~~~~~~l~~~~~Dyv-IgSVH~i~g~~~---~~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIg 220 (331)
T PRK06740 156 QELQSLLALGDFDYV-IGSVHFLNGWGF---DNPDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIA 220 (331)
T ss_pred HHHHHHHhcCCCCEE-EEeeeEeCCcCC---CCccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEee
Confidence 456666777777887 778897642110 0000011111111 233566788888889887776
No 87
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=48.38 E-value=48 Score=24.12 Aligned_cols=58 Identities=17% Similarity=0.212 Sum_probs=38.4
Q ss_pred HHHHHHcCCccEEEecCccHHHHHHHHHhcCCCCccccCCCCcccccHHHHHHHHHcCCeEEEec
Q 035739 166 MEESQMLGLTKSIGLSNFSRKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYS 230 (335)
Q Consensus 166 L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~v~a~~ 230 (335)
++++++.|++. +|. .+...+++......+++--..++ .....+..+|++++|+++-+.
T Consensus 3 ~~~~~ragkl~-~G~-----~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 3 YEKVSQAKSIV-IGT-----KQTVKALKRGSVKEVVVAEDADP-RLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred hHHHHhcCCEE-EcH-----HHHHHHHHcCCeeEEEEECCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 45667777652 443 56666777666555555555554 234678899999999998764
No 88
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=48.24 E-value=1.3e+02 Score=27.04 Aligned_cols=95 Identities=22% Similarity=0.238 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC-ccEEEecCccHHHHHHH
Q 035739 113 VIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGL-TKSIGLSNFSRKKIETI 191 (335)
Q Consensus 113 i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk-ir~iGvs~~~~~~l~~~ 191 (335)
-+..+-+.|.++|++.|.+-. |.. ..+.+++.+.+.+.++ .+-.++...+.+.++.+
T Consensus 23 ~k~~i~~~L~~~Gv~~IEvG~---P~~-------------------~~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a 80 (262)
T cd07948 23 DKIEIAKALDAFGVDYIELTS---PAA-------------------SPQSRADCEAIAKLGLKAKILTHIRCHMDDARIA 80 (262)
T ss_pred HHHHHHHHHHHcCCCEEEEEC---CCC-------------------CHHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHH
Confidence 344555569999998888873 422 2344555555554443 44455667778888888
Q ss_pred HHhcCCCCccccCCCCcccc---------c-----HHHHHHHHHcCCeEEEec
Q 035739 192 LTFATIPPSINQVEMHPVWQ---------Q-----RKLIEFCKAKGIIVTAYS 230 (335)
Q Consensus 192 ~~~~~~~~~~~q~~~~~~~~---------~-----~~~l~~~~~~gi~v~a~~ 230 (335)
++. +.+...+-++.|..+. + .+.+.+++++|+.|....
T Consensus 81 ~~~-g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ 132 (262)
T cd07948 81 VET-GVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS 132 (262)
T ss_pred HHc-CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 874 4332222222222111 1 356788999998766654
No 89
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=47.74 E-value=87 Score=27.30 Aligned_cols=70 Identities=17% Similarity=0.120 Sum_probs=47.1
Q ss_pred HHHHHHHHHcCCcc-EEEecCccHHHHHHHHHhcCCCCccccCCCCcc---cccHHHHHHHHHcCCeEEEeccCCC
Q 035739 163 WEAMEESQMLGLTK-SIGLSNFSRKKIETILTFATIPPSINQVEMHPV---WQQRKLIEFCKAKGIIVTAYSPLGA 234 (335)
Q Consensus 163 ~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~~l~~~~~~gi~v~a~~pl~~ 234 (335)
++.+.+|++...+. ..+=+.++...+.++++.... .++|+..+.. ..-.++..+|+++|+.++..+.+..
T Consensus 134 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~--d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~~s 207 (229)
T cd00308 134 LEGYAALRRRTGIPIAADESVTTVDDALEALELGAV--DILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLES 207 (229)
T ss_pred HHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCC--CEEecCccccCCHHHHHHHHHHHHHcCCEEeecCCCCC
Confidence 46677777777666 445556667777777665443 4666654443 2226788999999999999876654
No 90
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=47.52 E-value=1e+02 Score=31.84 Aligned_cols=113 Identities=11% Similarity=0.077 Sum_probs=70.8
Q ss_pred HHHHHHcCCccEEEecCccHHHHHHHHHhcC--CC-Cc-cccCCCCcccccHHHHHHHHHcCCeEEEeccCCCCCCcCCC
Q 035739 166 MEESQMLGLTKSIGLSNFSRKKIETILTFAT--IP-PS-INQVEMHPVWQQRKLIEFCKAKGIIVTAYSPLGAVGKIYGS 241 (335)
Q Consensus 166 L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~--~~-~~-~~q~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~~G~l~~~ 241 (335)
++.+....++-.+-=.+.+.+.+.++++... ++ .. .+.+=+--..|+..+.++|++.++-++.-+.-+
T Consensus 147 ~~~~~~~~~~~~~~QTT~~~~~~~~~~~~l~~~~~~~~~~~tiC~at~~Rq~a~~~la~~~d~~~vvGg~~S-------- 218 (647)
T PRK00087 147 AEKLPFDKKICVVSQTTEKQENFEKVLKELKKKGKEVKVFNTICNATEVRQEAAEKLAKKVDVMIVVGGKNS-------- 218 (647)
T ss_pred HhhCCCCCCEEEEEcCCCcHHHHHHHHHHHHHhCCCcccCCCcchhhhhHHHHHHHHHhhCCEEEEECCCCC--------
Confidence 3334334555555556666666666555432 21 11 111111112345778899998888887743333
Q ss_pred CccCChHHHHHHHHHhCC------CHHHHHHHHHhhcC-CEEEeCCCCHHHHHHh
Q 035739 242 NQVLENEALKEIAKARGK------TVAQVSLRWIVEQG-ATVVIKSLNLERMKQN 289 (335)
Q Consensus 242 ~~~~~~~~l~~la~~~g~------s~~q~al~~~l~~~-~~vi~g~~~~~~l~en 289 (335)
.+-..|.++|++.|. ++.++.-.|+-... +.+..|+++|+.+-+.
T Consensus 219 ---sNt~~L~~i~~~~~~~~~~ie~~~el~~~~~~~~~~vgitagaStP~~~i~~ 270 (647)
T PRK00087 219 ---SNTTKLYEICKSNCTNTIHIENAGELPEEWFKGVKIIGVTAGASTPDWIIEE 270 (647)
T ss_pred ---ccHHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEeccCCCHHHHHH
Confidence 345789999999873 67888889988776 7788999999866433
No 91
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=47.12 E-value=2.4e+02 Score=26.71 Aligned_cols=93 Identities=13% Similarity=0.194 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC-CccEEEecCccHHHHHHH
Q 035739 113 VIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLG-LTKSIGLSNFSRKKIETI 191 (335)
Q Consensus 113 i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-kir~iGvs~~~~~~l~~~ 191 (335)
-+..+-+.|.++|+++|++- +|.. -+.-++.++.+.+.+ ..+..+++......++.+
T Consensus 24 ~k~~ia~~L~~~Gv~~IEvG---~p~~-------------------~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a 81 (365)
T TIGR02660 24 EKLAIARALDEAGVDELEVG---IPAM-------------------GEEERAVIRAIVALGLPARLMAWCRARDADIEAA 81 (365)
T ss_pred HHHHHHHHHHHcCCCEEEEe---CCCC-------------------CHHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHH
Confidence 34556667999999998885 3321 123356666776663 377777887778888887
Q ss_pred HHhcCCCCccccCCCCcccc--------c------HHHHHHHHHcCCeEEE
Q 035739 192 LTFATIPPSINQVEMHPVWQ--------Q------RKLIEFCKAKGIIVTA 228 (335)
Q Consensus 192 ~~~~~~~~~~~q~~~~~~~~--------~------~~~l~~~~~~gi~v~a 228 (335)
++. +.+.+.+-+..|..+. + .+.+++++++|..+..
T Consensus 82 ~~~-g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~ 131 (365)
T TIGR02660 82 ARC-GVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSV 131 (365)
T ss_pred HcC-CcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 764 3332222223332211 1 3578899999987653
No 92
>PRK07534 methionine synthase I; Validated
Probab=46.96 E-value=2.5e+02 Score=26.35 Aligned_cols=209 Identities=13% Similarity=0.110 Sum_probs=117.8
Q ss_pred ChHHHHHHHHHHHHcCCCEeeCCCCcC-CHHH---------HH----HHH---HHHHHcCCCCCCCceEEeeccCCCC--
Q 035739 47 DTDALKLVVLEAIKLGYRHFDTAAMYG-TEKA---------LG----EAI---AEALRLGLVSSREQLFITSKLWCQN-- 107 (335)
Q Consensus 47 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg-se~~---------lG----~~l---~~~~~~g~~~~R~~~~i~tK~~~~~-- 107 (335)
.++.+.++=+..+++|-+++=|. .|+ +-.. +- .++ ++.. .. ...+++|+.-+++..
T Consensus 43 ~Pe~V~~vH~~Yl~AGAdiI~Tn-Ty~as~~~l~~~~~~~~~~~l~~~av~lAr~a~-~~---~~~~~~VaGsIGP~g~~ 117 (336)
T PRK07534 43 HPDNITALHQGFVDAGSDIILTN-SFGGTAARLKLHDAQDRVHELNRAAAEIAREVA-DK---AGRKVIVAGSVGPTGEI 117 (336)
T ss_pred CHHHHHHHHHHHHHhcCCEEEec-CcccCHHHHHhcCcHHHHHHHHHHHHHHHHHHH-Hh---cCCccEEEEecCCCccc
Confidence 45667777777789999999876 454 3111 11 111 2211 11 123577887776531
Q ss_pred ------CChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEec
Q 035739 108 ------AHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLS 181 (335)
Q Consensus 108 ------~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs 181 (335)
.+.+.+.......++.|--.-+|++++-... +..|+..+++.+++.|+=-.+.++
T Consensus 118 l~~~~~~~~~e~~~~~~~qi~~l~~~gvD~l~~ET~p-------------------~l~E~~a~~~~~~~~~~Pv~vSft 178 (336)
T PRK07534 118 MEPMGALTHALAVEAFHEQAEGLKAGGADVLWVETIS-------------------APEEIRAAAEAAKLAGMPWCGTMS 178 (336)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeccC-------------------CHHHHHHHHHHHHHcCCeEEEEEE
Confidence 3456677777777777744569999998652 277887888888777765556655
Q ss_pred Ccc---------HHHHHHHHHhcCCCCccccCCCCc-cccc-HHHHHHHHHc-CCeEEEeccCCCCCC-cCCCCccCChH
Q 035739 182 NFS---------RKKIETILTFATIPPSINQVEMHP-VWQQ-RKLIEFCKAK-GIIVTAYSPLGAVGK-IYGSNQVLENE 248 (335)
Q Consensus 182 ~~~---------~~~l~~~~~~~~~~~~~~q~~~~~-~~~~-~~~l~~~~~~-gi~v~a~~pl~~~G~-l~~~~~~~~~~ 248 (335)
... ...+..+++..+..+..+-+++.. ...- ..++...... ++.+++|-. + |. -+.....
T Consensus 179 ~~~~g~l~~G~~~~~~~~~~~~~~~~~~avGvNC~~gp~~~~~~l~~~~~~~~~~pl~vyPN-a--G~p~~~~~~~---- 251 (336)
T PRK07534 179 FDTAGRTMMGLTPADLADLVEKLGEPPLAFGANCGVGASDLLRTVLGFTAQGPERPIIAKGN-A--GIPKYVDGHI---- 251 (336)
T ss_pred ECCCCeeCCCCcHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEcC-C--CCcccCCCcc----
Confidence 432 223334444333345677778774 3222 3444444433 566766633 2 22 1101110
Q ss_pred HHHHHHHHhCCC---HHHHHHHHHhhcCCEEEeCC--CCHHHHHHhhcccc
Q 035739 249 ALKEIAKARGKT---VAQVSLRWIVEQGATVVIKS--LNLERMKQNLGIFD 294 (335)
Q Consensus 249 ~l~~la~~~g~s---~~q~al~~~l~~~~~vi~g~--~~~~~l~enl~a~~ 294 (335)
.+..+ .++.+-.| ...|..+|=|+ ++++|+++.-++++
T Consensus 252 -------~~~~~p~~~~~~~~~~-~~~Ga~iIGGCCGTtP~hI~~la~~l~ 294 (336)
T PRK07534 252 -------HYDGTPELMAEYAVLA-RDAGARIIGGCCGTMPEHLAAMRAALD 294 (336)
T ss_pred -------ccCCCHHHHHHHHHHH-HHcCCcEEeeecCCCHHHHHHHHHHHc
Confidence 01122 24556667 45577777554 68888888777654
No 93
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=46.73 E-value=1.7e+02 Score=26.41 Aligned_cols=78 Identities=18% Similarity=0.121 Sum_probs=52.0
Q ss_pred ChH-HHHHHHHHHHHcCCCEeeCCCCcC----CHHHHHHHHHHHHHc-CCCCCCCceEEeeccCCCCCChhhHHHHHHHH
Q 035739 47 DTD-ALKLVVLEAIKLGYRHFDTAAMYG----TEKALGEAIAEALRL-GLVSSREQLFITSKLWCQNAHRDHVIPALKKS 120 (335)
Q Consensus 47 ~~~-~~~~~l~~A~~~Gin~~DtA~~Yg----se~~lG~~l~~~~~~-g~~~~R~~~~i~tK~~~~~~~~~~i~~~~e~s 120 (335)
+++ +...+.+.|.+.|..|+=|+..|+ +.+.+ +.+++.+.+ +. .++ +.-|....-.+.+....-++..
T Consensus 144 ~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv-~lm~~~i~~~~~---~~~--vgIKAsGGIrt~~~A~~~i~ag 217 (257)
T PRK05283 144 KDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAA-RIMLEVIRDMGV---AKT--VGFKPAGGVRTAEDAAQYLALA 217 (257)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHH-HHHHHHHHhccc---CCC--eeEEccCCCCCHHHHHHHHHHH
Confidence 445 478899999999999999999996 22222 233332110 10 122 4556644445678899999999
Q ss_pred HHHhCCCccc
Q 035739 121 LSALQMEYLD 130 (335)
Q Consensus 121 L~~Lg~d~iD 130 (335)
-+.||.++++
T Consensus 218 ~~~lg~~~~~ 227 (257)
T PRK05283 218 DEILGADWAD 227 (257)
T ss_pred HHHhChhhcC
Confidence 9999988855
No 94
>PF15221 LEP503: Lens epithelial cell protein LEP503
Probab=46.57 E-value=15 Score=24.36 Aligned_cols=35 Identities=31% Similarity=0.521 Sum_probs=25.2
Q ss_pred CCCCccccccccc---eEEcCCCCCCccCCcceeeCcccC
Q 035739 1 MDSSTQSTVFNIP---KLKLSSSSGHLNMPVIGLGCAVDK 37 (335)
Q Consensus 1 ~~~~~~~~~~~m~---~~~lg~t~g~~~vs~lg~G~~~~~ 37 (335)
|-+.++.....|| .+.|++| | +.||.+-+|++.-|
T Consensus 1 MqP~tqPLaqalPfs~~~~l~dt-g-lrvpv~KmGtgweG 38 (61)
T PF15221_consen 1 MQPQTQPLAQALPFSLGRALRDT-G-LRVPVIKMGTGWEG 38 (61)
T ss_pred CCCCCCchhhhCCcccccccccc-c-cCCceeeecchHHH
Confidence 4444555555554 6789999 9 99999999987644
No 95
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=46.54 E-value=1e+02 Score=28.15 Aligned_cols=78 Identities=14% Similarity=0.213 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHcCCCEeeCCC----C-----cC--CH-------HHHHHHHHHHHHcCCCCCCCceEEeeccCC----C
Q 035739 49 DALKLVVLEAIKLGYRHFDTAA----M-----YG--TE-------KALGEAIAEALRLGLVSSREQLFITSKLWC----Q 106 (335)
Q Consensus 49 ~~~~~~l~~A~~~Gin~~DtA~----~-----Yg--se-------~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~----~ 106 (335)
+...++|+...+.||++|=.+. . ++ -+ ..+|+.+++ ..+-++..-+. .
T Consensus 45 ~~l~~~L~~n~~~~I~~yRisS~liP~ashp~~~~~~~~~~~~~l~~iG~~~~~----------~~iRls~HP~qf~vLn 114 (275)
T PF03851_consen 45 EDLLRILEYNIAHGIRFYRISSDLIPLASHPEVGWDWEEEFAEELAEIGDLAKE----------NGIRLSMHPDQFTVLN 114 (275)
T ss_dssp HHHHHHHHHHHHTT--EEE--TTSSTTTTSTT--S-HHHHHHHHHHHHHHHHHH----------TT-EEEE---TT--TT
T ss_pred HHHHHHHHHHHHcCCCEEecCcccCCCCCCcccccchHHHHHHHHHHHHHHHHH----------cCCeEEecCCcceeCC
Confidence 4566788888899999996554 1 22 11 234555543 33445544321 1
Q ss_pred CCChhhHHHHHHH------HHHHhCCCcc--ceEEeec
Q 035739 107 NAHRDHVIPALKK------SLSALQMEYL--DLYLVHW 136 (335)
Q Consensus 107 ~~~~~~i~~~~e~------sL~~Lg~d~i--Dl~~lH~ 136 (335)
..+++-+.+++.. .|+.||++.- ..+.||-
T Consensus 115 Sp~~~Vv~~si~~L~yH~~~Ld~mg~~~~~~~~i~IH~ 152 (275)
T PF03851_consen 115 SPREEVVENSIRDLEYHARLLDLMGLDDSPDHKINIHV 152 (275)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHTT-TT----EEEEE-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCcccccEEEEee
Confidence 1235556666543 4788998877 8899994
No 96
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=46.46 E-value=1.8e+02 Score=26.37 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHHcCCccEEEecCccHHHHHHHHHhc
Q 035739 157 MDYRGVWEAMEESQMLGLTKSIGLSNFSRKKIETILTFA 195 (335)
Q Consensus 157 ~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~ 195 (335)
...+-+-++..+++++|+ .|=+|+|..++++++++..
T Consensus 164 VN~elLk~~I~~lk~~Ga--tIifSsH~Me~vEeLCD~l 200 (300)
T COG4152 164 VNVELLKDAIFELKEEGA--TIIFSSHRMEHVEELCDRL 200 (300)
T ss_pred hhHHHHHHHHHHHHhcCC--EEEEecchHHHHHHHhhhh
Confidence 435556778899999999 5999999999999998854
No 97
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=46.09 E-value=1.7e+02 Score=24.19 Aligned_cols=74 Identities=15% Similarity=0.007 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCccHHHHHHHHHhcCCCCccccCCCCcccc-------cHHHHHHHHHcCCeEEEecc
Q 035739 159 YRGVWEAMEESQMLGLTKSIGLSNFSRKKIETILTFATIPPSINQVEMHPVWQ-------QRKLIEFCKAKGIIVTAYSP 231 (335)
Q Consensus 159 ~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~-------~~~~l~~~~~~gi~v~a~~p 231 (335)
.+++++..-+=.++.-|++|=|.+.+......+++...-...++-+.++..+. +.++-+..+++|..|+.-+-
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~~sH 91 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLTQSH 91 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEeecccccCCceecCHHHHHHHHHcCceeeeehh
Confidence 55666665555666778899888887777666666554333333334443333 26788999999998887553
Q ss_pred C
Q 035739 232 L 232 (335)
Q Consensus 232 l 232 (335)
.
T Consensus 92 a 92 (186)
T COG1751 92 A 92 (186)
T ss_pred h
Confidence 3
No 98
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=45.90 E-value=1.8e+02 Score=27.76 Aligned_cols=22 Identities=9% Similarity=0.039 Sum_probs=18.5
Q ss_pred CChHHHHHHHHHHHHcCCCEee
Q 035739 46 SDTDALKLVVLEAIKLGYRHFD 67 (335)
Q Consensus 46 ~~~~~~~~~l~~A~~~Gin~~D 67 (335)
.+.+++.++++.+.+.|++.|-
T Consensus 90 ls~eei~~~i~~~~~~Gv~~I~ 111 (373)
T PLN02951 90 LSQDEIVRLAGLFVAAGVDKIR 111 (373)
T ss_pred CCHHHHHHHHHHHHHCCCCEEE
Confidence 5678899999888899998775
No 99
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=45.71 E-value=2e+02 Score=24.91 Aligned_cols=122 Identities=14% Similarity=0.118 Sum_probs=68.0
Q ss_pred CChHHHHHHHHHHHHcCCCEeeCCCCcCCHHHHHHHHHHHHHcCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHHhC
Q 035739 46 SDTDALKLVVLEAIKLGYRHFDTAAMYGTEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSALQ 125 (335)
Q Consensus 46 ~~~~~~~~~l~~A~~~Gin~~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~~e~sL~~Lg 125 (335)
.++++-.+++..+++.|+.++|.--....+...-...... .+..++++..-+....+.+.+...+++.. .+|
T Consensus 72 ~~~~~~~~ll~~~~~~~~d~iDiE~~~~~~~~~~~~~~~~-------~~~~iI~S~H~f~~tp~~~~l~~~~~~~~-~~g 143 (224)
T PF01487_consen 72 GSEEEYLELLERAIRLGPDYIDIELDLFPDDLKSRLAARK-------GGTKIILSYHDFEKTPSWEELIELLEEMQ-ELG 143 (224)
T ss_dssp S-HHHHHHHHHHHHHHTSSEEEEEGGCCHHHHHHHHHHHH-------TTSEEEEEEEESS---THHHHHHHHHHHH-HTT
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcccchhHHHHHHHHhh-------CCCeEEEEeccCCCCCCHHHHHHHHHHHH-hcC
Confidence 3678888999999999999999765533222211222221 57778887775544444455555555544 777
Q ss_pred CCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCccHHHHHHHHH
Q 035739 126 MEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSRKKIETILT 193 (335)
Q Consensus 126 ~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~ 193 (335)
.|.+=+.....- ..+...+++...++++.-...-|+++.-....+.+++.
T Consensus 144 adivKia~~~~~------------------~~D~~~l~~~~~~~~~~~~~p~i~~~MG~~G~~SRi~~ 193 (224)
T PF01487_consen 144 ADIVKIAVMANS------------------PEDVLRLLRFTKEFREEPDIPVIAISMGELGRISRILN 193 (224)
T ss_dssp -SEEEEEEE-SS------------------HHHHHHHHHHHHHHHHHTSSEEEEEEETGGGHHHHHCH
T ss_pred CCeEEEEeccCC------------------HHHHHHHHHHHHHHhhccCCcEEEEEcCCCchhHHHHH
Confidence 665555544422 11244566666666655345556655555445555533
No 100
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=45.52 E-value=2.7e+02 Score=27.36 Aligned_cols=124 Identities=13% Similarity=0.102 Sum_probs=72.8
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CccEEEec--Ccc--HHHHHHHHHh---cCCCCccccCCCCcccccHHHHHHHHHcCCe
Q 035739 154 LLPMDYRGVWEAMEESQMLG-LTKSIGLS--NFS--RKKIETILTF---ATIPPSINQVEMHPVWQQRKLIEFCKAKGII 225 (335)
Q Consensus 154 ~~~~~~~~~~~~L~~l~~~G-kir~iGvs--~~~--~~~l~~~~~~---~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~ 225 (335)
+.....+.+.+.++.+++.. .++.+-+. +|. ...+.++++. .++.. ..+...+ -..++++.+++.|+.
T Consensus 224 ~r~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~~~~~~~~l~~~l~~~~i~~-~~~~~~~---~~~e~l~~l~~aG~~ 299 (472)
T TIGR03471 224 YRTRSAESVIEEVKYALENFPEVREFFFDDDTFTDDKPRAEEIARKLGPLGVTW-SCNARAN---VDYETLKVMKENGLR 299 (472)
T ss_pred eEeCCHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHhhcCceE-EEEecCC---CCHHHHHHHHHcCCC
Confidence 44567889999999999874 56666554 332 3444444332 23221 1122211 247899999999987
Q ss_pred EEEeccCCCCCCcCCCCccCChHHHHHHHHHhCCCHHHHHHHHHhhcC----CEEEeCC--CCHHHHHHhhcc
Q 035739 226 VTAYSPLGAVGKIYGSNQVLENEALKEIAKARGKTVAQVSLRWIVEQG----ATVVIKS--LNLERMKQNLGI 292 (335)
Q Consensus 226 v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~g~s~~q~al~~~l~~~----~~vi~g~--~~~~~l~enl~a 292 (335)
.+..+.=+. ..+.++.+.+.+...-..-+++++...| ...|+|. .+.+.+++.++.
T Consensus 300 ~v~iGiES~-----------s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~ 361 (472)
T TIGR03471 300 LLLVGYESG-----------DQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDF 361 (472)
T ss_pred EEEEcCCCC-----------CHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHH
Confidence 666543332 3455666644332223344667777777 4567784 578888887764
No 101
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=45.45 E-value=2.7e+02 Score=26.26 Aligned_cols=145 Identities=14% Similarity=0.100 Sum_probs=88.5
Q ss_pred ChHHHHHHHHHHHHcCCCEeeCCCCcCCHHHHHHHHHHHHHcCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHHhCC
Q 035739 47 DTDALKLVVLEAIKLGYRHFDTAAMYGTEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSALQM 126 (335)
Q Consensus 47 ~~~~~~~~l~~A~~~Gin~~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~~e~sL~~Lg~ 126 (335)
+.++..+.++.+.+.|++.|=.-- .+. =+++++. -.+++.|..-.. ..++.+.. .+-++.|.
T Consensus 126 ~~~~~~~~a~~~~~~Gf~~~KiKv----~~~-v~avre~-------~G~~~~l~vDaN-~~w~~~~A----~~~~~~l~- 187 (361)
T cd03322 126 DIPELLEAVERHLAQGYRAIRVQL----PKL-FEAVREK-------FGFEFHLLHDVH-HRLTPNQA----ARFGKDVE- 187 (361)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeCH----HHH-HHHHHhc-------cCCCceEEEECC-CCCCHHHH----HHHHHHhh-
Confidence 445566777777889999875321 111 1344442 234555554442 22333332 22333342
Q ss_pred CccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcc-EEEecCccHHHHHHHHHhcCCCCccccCC
Q 035739 127 EYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTK-SIGLSNFSRKKIETILTFATIPPSINQVE 205 (335)
Q Consensus 127 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~ 205 (335)
..++.++-.|.. .+-++.+.+|++...+. ..|=+.++...+..+++... ..++|..
T Consensus 188 -~~~l~~iEeP~~--------------------~~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a--~di~~~d 244 (361)
T cd03322 188 -PYRLFWMEDPTP--------------------AENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERL--IDYIRTT 244 (361)
T ss_pred -hcCCCEEECCCC--------------------cccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCC--CCEEecC
Confidence 346777777743 13367788888887776 77788888899999988654 3466666
Q ss_pred CCcc---cccHHHHHHHHHcCCeEEEeccC
Q 035739 206 MHPV---WQQRKLIEFCKAKGIIVTAYSPL 232 (335)
Q Consensus 206 ~~~~---~~~~~~l~~~~~~gi~v~a~~pl 232 (335)
...+ ..-.++.+.|+++|+.++.++..
T Consensus 245 ~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 245 VSHAGGITPARKIADLASLYGVRTGWHGPT 274 (361)
T ss_pred ccccCCHHHHHHHHHHHHHcCCeeeccCCC
Confidence 5443 22368999999999999876443
No 102
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=45.33 E-value=62 Score=26.68 Aligned_cols=72 Identities=19% Similarity=0.246 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHcCCCEeeCCCCcC-CHHHHHHHHHHHHHcCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHHhCC
Q 035739 48 TDALKLVVLEAIKLGYRHFDTAAMYG-TEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSALQM 126 (335)
Q Consensus 48 ~~~~~~~l~~A~~~Gin~~DtA~~Yg-se~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~~e~sL~~Lg~ 126 (335)
++..+-.+++|-+.||.+|=.|..|| +-..+-+.+. | .-+=+.++-..+-...+...+.+.+++-|+..|.
T Consensus 13 ~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemve-----g---~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa 84 (186)
T COG1751 13 DETLEIAVERAKELGIKHIVVASSTGYTALKALEMVE-----G---DLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGA 84 (186)
T ss_pred HHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcc-----c---CceEEEEEeecccccCCceecCHHHHHHHHHcCc
Confidence 45566677888899999999999998 3222222222 1 2122344444444444556788889999999995
Q ss_pred C
Q 035739 127 E 127 (335)
Q Consensus 127 d 127 (335)
+
T Consensus 85 ~ 85 (186)
T COG1751 85 K 85 (186)
T ss_pred e
Confidence 4
No 103
>PRK09061 D-glutamate deacylase; Validated
Probab=45.07 E-value=3.1e+02 Score=27.34 Aligned_cols=113 Identities=15% Similarity=0.122 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHcCCCEeeCCCCc--C-CHHHHHHHHHHHHHcCCCCCCCceEEeeccCCCCC-ChhhHHHHHHHHHHHhC
Q 035739 50 ALKLVVLEAIKLGYRHFDTAAMY--G-TEKALGEAIAEALRLGLVSSREQLFITSKLWCQNA-HRDHVIPALKKSLSALQ 125 (335)
Q Consensus 50 ~~~~~l~~A~~~Gin~~DtA~~Y--g-se~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~-~~~~i~~~~e~sL~~Lg 125 (335)
+..++++.|++.|+..|=+...| + +...+-+.++.. .+-+..|...+..... +......++++.++.-.
T Consensus 170 ~m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A-------~~~g~~v~~H~e~~~~~~~~~e~~av~~~i~lA~ 242 (509)
T PRK09061 170 EILELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLA-------ARAGVPTYTHVRYLSNVDPRSSVDAYQELIAAAA 242 (509)
T ss_pred HHHHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHH-------HHcCCEEEEEecCcccCCchhHHHHHHHHHHHHH
Confidence 36778889999999999876556 2 455555565544 3445677766643221 12223344454444332
Q ss_pred CCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCcc
Q 035739 126 MEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFS 184 (335)
Q Consensus 126 ~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~ 184 (335)
..-.-+...|-.... .....+.++.+++++++|.--..-++-|.
T Consensus 243 ~~G~rv~IsHlss~g---------------~~~~~~~le~I~~Ar~~Gi~Vt~e~~P~~ 286 (509)
T PRK09061 243 ETGAHMHICHVNSTS---------------LRDIDRCLALVEKAQAQGLDVTTEAYPYG 286 (509)
T ss_pred HhCCCEEEEeeccCC---------------cccHHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 222336666754321 12257888999999999854444454444
No 104
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=44.75 E-value=2.7e+02 Score=26.10 Aligned_cols=115 Identities=16% Similarity=0.111 Sum_probs=67.7
Q ss_pred CCChHHHHHHHHHHHHcCCCEeeCCCC---------cC------------CHHHHHHHHHHHHHcCCCCCCCceEEeecc
Q 035739 45 KSDTDALKLVVLEAIKLGYRHFDTAAM---------YG------------TEKALGEAIAEALRLGLVSSREQLFITSKL 103 (335)
Q Consensus 45 ~~~~~~~~~~l~~A~~~Gin~~DtA~~---------Yg------------se~~lG~~l~~~~~~g~~~~R~~~~i~tK~ 103 (335)
.++.++...+.+.|-+.|+.+|=|.-. |+ +-.+|-. +.. ....++|+|=.
T Consensus 72 ~l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KIaS~~~~n~pLL~~-~A~--------~gkPvilStGm 142 (329)
T TIGR03569 72 ELSEEDHRELKEYCESKGIEFLSTPFDLESADFLEDLGVPRFKIPSGEITNAPLLKK-IAR--------FGKPVILSTGM 142 (329)
T ss_pred CCCHHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCEEEECcccccCHHHHHH-HHh--------cCCcEEEECCC
Confidence 357788999999999999999855432 21 2222222 221 33446666654
Q ss_pred CCCCCChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCc
Q 035739 104 WCQNAHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNF 183 (335)
Q Consensus 104 ~~~~~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~ 183 (335)
.+.+.+..+++...+. |.+.-++.+||+...+.. +.++ --+.++..|++.=. .-||+|.|
T Consensus 143 ----atl~Ei~~Av~~i~~~-G~~~~~i~llhC~s~YP~-------~~~~-------~nL~~I~~Lk~~f~-~pVG~SdH 202 (329)
T TIGR03569 143 ----ATLEEIEAAVGVLRDA-GTPDSNITLLHCTTEYPA-------PFED-------VNLNAMDTLKEAFD-LPVGYSDH 202 (329)
T ss_pred ----CCHHHHHHHHHHHHHc-CCCcCcEEEEEECCCCCC-------Cccc-------CCHHHHHHHHHHhC-CCEEECCC
Confidence 2568888888877543 422126999999754321 1111 12345555555433 36999999
Q ss_pred cHHHH
Q 035739 184 SRKKI 188 (335)
Q Consensus 184 ~~~~l 188 (335)
+....
T Consensus 203 t~G~~ 207 (329)
T TIGR03569 203 TLGIE 207 (329)
T ss_pred CccHH
Confidence 96543
No 105
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=44.66 E-value=32 Score=23.58 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhh
Q 035739 249 ALKEIAKARGKTVAQVSLRWIVE 271 (335)
Q Consensus 249 ~l~~la~~~g~s~~q~al~~~l~ 271 (335)
.+.+||+++|+++..+|..|+.-
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~V 37 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAEV 37 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHH
Confidence 36789999999999999999863
No 106
>PLN02540 methylenetetrahydrofolate reductase
Probab=44.22 E-value=3.6e+02 Score=27.38 Aligned_cols=161 Identities=14% Similarity=0.126 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHHHcCCCEeeCCCCcC---CHHHHHHH--HHHHHHcCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHH
Q 035739 48 TDALKLVVLEAIKLGYRHFDTAAMYG---TEKALGEA--IAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLS 122 (335)
Q Consensus 48 ~~~~~~~l~~A~~~Gin~~DtA~~Yg---se~~lG~~--l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~~e~sL~ 122 (335)
.+...+.+++-.+.|-.|+|.+..=| .+..+.-+ +++. -| +-.+-.+.+.+.+...+...+++. +
T Consensus 14 ~~nL~~~~~rl~~~~P~FisVT~gAgGst~~~Tl~la~~lq~~--~G-------ie~i~HLTCrd~n~~~L~~~L~~a-~ 83 (565)
T PLN02540 14 VDNLFERMDRMVAHGPLFCDITWGAGGSTADLTLDIANRMQNM--IC-------VETMMHLTCTNMPVEKIDHALETI-K 83 (565)
T ss_pred HHHHHHHHHHHhccCCCEEEeCCCCCCCcHHHHHHHHHHHHHh--cC-------CCeeEEeeecCCCHHHHHHHHHHH-H
Confidence 34555666777788999999887766 34443322 2211 02 223333334556666777766665 7
Q ss_pred HhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHc-CCccEEEecCccH----------------
Q 035739 123 ALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQML-GLTKSIGLSNFSR---------------- 185 (335)
Q Consensus 123 ~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-Gkir~iGvs~~~~---------------- 185 (335)
.+|+. .++.|..-.+ ..++ .+.+... .+..+.+-++.+++. |....|||+.+..
T Consensus 84 ~~GIr--NILALrGDpp-~~~d-~~~~~~g-----~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~~~~~~ 154 (565)
T PLN02540 84 SNGIQ--NILALRGDPP-HGQD-KFVQVEG-----GFACALDLVKHIRSKYGDYFGITVAGYPEAHPDVIGGDGLATPEA 154 (565)
T ss_pred HCCCC--EEEEECCCCC-CCCC-CcCCCCC-----CcccHHHHHHHHHHhCCCCceEEEeCCCCCCCcccccccccCCCC
Confidence 88865 3555554221 1111 1111111 122244444445544 5566788887642
Q ss_pred --HHHHHHHHh--cCCCCccccCCCCcccccHHHHHHHHHcC--CeEEE
Q 035739 186 --KKIETILTF--ATIPPSINQVEMHPVWQQRKLIEFCKAKG--IIVTA 228 (335)
Q Consensus 186 --~~l~~~~~~--~~~~~~~~q~~~~~~~~~~~~l~~~~~~g--i~v~a 228 (335)
.++..+.+. ++-++.+.|+-|..- .-.+.++.|++.| +.|++
T Consensus 155 ~~~dl~~Lk~KvdAGAdFiITQlfFD~d-~f~~f~~~~r~~Gi~vPIip 202 (565)
T PLN02540 155 YQKDLAYLKEKVDAGADLIITQLFYDTD-IFLKFVNDCRQIGITCPIVP 202 (565)
T ss_pred hHHHHHHHHHHHHcCCCEEeeccccCHH-HHHHHHHHHHhcCCCCCEEe
Confidence 234444443 455667777666531 1146788899998 44444
No 107
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=43.94 E-value=2.9e+02 Score=26.56 Aligned_cols=131 Identities=12% Similarity=0.147 Sum_probs=69.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCccEEEecC-----cc-----HHHHHHHHHhcC-CC--CccccCCCCcccccHHHHHHH
Q 035739 153 DLLPMDYRGVWEAMEESQMLGLTKSIGLSN-----FS-----RKKIETILTFAT-IP--PSINQVEMHPVWQQRKLIEFC 219 (335)
Q Consensus 153 ~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~-----~~-----~~~l~~~~~~~~-~~--~~~~q~~~~~~~~~~~~l~~~ 219 (335)
.+...+.+++.+.++.+++.| ++.|-+.. +. ...+.++++... .+ ..+.....++..-..++++.+
T Consensus 163 ~~r~r~~e~I~~Ei~~l~~~g-~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~~m 241 (414)
T TIGR01579 163 RSRSVPMEAILKQVKILVAKG-YKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQIPGIKRIRLSSIDPEDIDEELLEAI 241 (414)
T ss_pred CCccCCHHHHHHHHHHHHHCC-CceEEEeeEccchhccCCCCCCcHHHHHHHHhcCCCCcEEEEeCCChhhCCHHHHHHH
Confidence 455677999999999999987 55555432 21 122444443221 11 111111223333347889998
Q ss_pred HHcC-CeEEEeccCCCCCCcCCCCccCChHHHHHHHHHhCCCHHHHHHHHHhh--cC----CEEEeCC--CCHHHHHHhh
Q 035739 220 KAKG-IIVTAYSPLGAVGKIYGSNQVLENEALKEIAKARGKTVAQVSLRWIVE--QG----ATVVIKS--LNLERMKQNL 290 (335)
Q Consensus 220 ~~~g-i~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~g~s~~q~al~~~l~--~~----~~vi~g~--~~~~~l~enl 290 (335)
++.| +-....-++-+ ...+.++.+.+.+...-..-+++.+.+ .+ +..|+|. .+.+.+++.+
T Consensus 242 ~~~~~~~~~l~lglES----------gs~~vLk~m~R~~~~~~~~~~v~~l~~~~~gi~i~~~~IvG~PgET~ed~~~tl 311 (414)
T TIGR01579 242 ASEKRLCPHLHLSLQS----------GSDRVLKRMRRKYTRDDFLKLVNKLRSVRPDYAFGTDIIVGFPGESEEDFQETL 311 (414)
T ss_pred HhcCccCCCeEECCCc----------CChHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeeeeeEEEECCCCCHHHHHHHH
Confidence 8765 21122222222 133556555554433333445566665 33 4577774 5778887777
Q ss_pred cccc
Q 035739 291 GIFD 294 (335)
Q Consensus 291 ~a~~ 294 (335)
+.+.
T Consensus 312 ~~i~ 315 (414)
T TIGR01579 312 RMVK 315 (414)
T ss_pred HHHH
Confidence 6543
No 108
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=43.69 E-value=1.2e+02 Score=26.46 Aligned_cols=142 Identities=16% Similarity=0.173 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCccHHHHHHH
Q 035739 112 HVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSRKKIETI 191 (335)
Q Consensus 112 ~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~ 191 (335)
..+..+-+.|.++|+++|++- .|... ....+.++.+.+.... .+..+++......++..
T Consensus 14 ~~k~~i~~~L~~~Gv~~iEvg---~~~~~----------------~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~ 72 (237)
T PF00682_consen 14 EEKLEIAKALDEAGVDYIEVG---FPFAS----------------EDDFEQVRRLREALPN--ARLQALCRANEEDIERA 72 (237)
T ss_dssp HHHHHHHHHHHHHTTSEEEEE---HCTSS----------------HHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEc---ccccC----------------HHHHHHhhhhhhhhcc--cccceeeeehHHHHHHH
Confidence 445556667999999998888 32111 1133445555555555 55566666776777665
Q ss_pred HH---hcCCCCccccCCCCccc--------------ccHHHHHHHHHcCCeEEEeccCCCCCCcCCCCccCChHHHHHHH
Q 035739 192 LT---FATIPPSINQVEMHPVW--------------QQRKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLENEALKEIA 254 (335)
Q Consensus 192 ~~---~~~~~~~~~q~~~~~~~--------------~~~~~l~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la 254 (335)
++ ..+.+..-+-++.|... .-.+.+.++++.|..+...-+... ....+.+.+++
T Consensus 73 ~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~---------~~~~~~~~~~~ 143 (237)
T PF00682_consen 73 VEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDAS---------RTDPEELLELA 143 (237)
T ss_dssp HHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTG---------GSSHHHHHHHH
T ss_pred HHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccc---------cccHHHHHHHH
Confidence 54 34444333334444421 115678999999999833222221 12334444443
Q ss_pred HHhCCCHHHHHHHHHhhcC--CEEE---eCCCCHHHHHHhhccccc
Q 035739 255 KARGKTVAQVSLRWIVEQG--ATVV---IKSLNLERMKQNLGIFDW 295 (335)
Q Consensus 255 ~~~g~s~~q~al~~~l~~~--~~vi---~g~~~~~~l~enl~a~~~ 295 (335)
+. +..-| ...| .|..+|.++.+.++.+..
T Consensus 144 ~~------------~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~ 177 (237)
T PF00682_consen 144 EA------------LAEAGADIIYLADTVGIMTPEDVAELVRALRE 177 (237)
T ss_dssp HH------------HHHHT-SEEEEEETTS-S-HHHHHHHHHHHHH
T ss_pred HH------------HHHcCCeEEEeeCccCCcCHHHHHHHHHHHHH
Confidence 32 11114 2333 477788888888876543
No 109
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=43.58 E-value=2.3e+02 Score=27.19 Aligned_cols=66 Identities=24% Similarity=0.310 Sum_probs=38.9
Q ss_pred ChHHHHHHHHHHHHcCCCEeeCCCCcCCHHHHHHHHHHHHHcCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHHhCC
Q 035739 47 DTDALKLVVLEAIKLGYRHFDTAAMYGTEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSALQM 126 (335)
Q Consensus 47 ~~~~~~~~l~~A~~~Gin~~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~~e~sL~~Lg~ 126 (335)
..+..++- -.|+|-|+-.+-||..-. .+-.++.... + .-|.++=+++++ ......+..+|++||+
T Consensus 63 T~~vlE~R-iAaLEGG~aa~a~aSG~A---A~~~ai~~la--~---aGD~iVss~~LY------GGT~~lf~~tl~~~Gi 127 (426)
T COG2873 63 TTDVLEER-IAALEGGVAALAVASGQA---AITYAILNLA--G---AGDNIVSSSKLY------GGTYNLFSHTLKRLGI 127 (426)
T ss_pred hHHHHHHH-HHHhhcchhhhhhccchH---HHHHHHHHhc--c---CCCeeEeecccc------CchHHHHHHHHHhcCc
Confidence 33434333 467899988877764321 1222333321 1 556777777763 3455678889999995
Q ss_pred C
Q 035739 127 E 127 (335)
Q Consensus 127 d 127 (335)
+
T Consensus 128 ~ 128 (426)
T COG2873 128 E 128 (426)
T ss_pred E
Confidence 4
No 110
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=43.52 E-value=2.5e+02 Score=25.44 Aligned_cols=135 Identities=11% Similarity=0.047 Sum_probs=74.6
Q ss_pred ChHHHHHHHHHHHHcCCCEeeC----------CCCcC-CHHHHHHHHHHHHHcCCCCCCC-ceEEeeccCCCCCChhhHH
Q 035739 47 DTDALKLVVLEAIKLGYRHFDT----------AAMYG-TEKALGEAIAEALRLGLVSSRE-QLFITSKLWCQNAHRDHVI 114 (335)
Q Consensus 47 ~~~~~~~~l~~A~~~Gin~~Dt----------A~~Yg-se~~lG~~l~~~~~~g~~~~R~-~~~i~tK~~~~~~~~~~i~ 114 (335)
+.++..+..+.+.+.|+..||. ...|+ +.+.+.+.++.. .+. ++-|..|+.... +.+
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~v-------r~~~~~Pv~vKl~~~~---~~~- 168 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAV-------KKATDVPVIVKLTPNV---TDI- 168 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHH-------HhccCCCEEEEeCCCc---hhH-
Confidence 5678888888888999999876 23344 566666666654 222 577888985432 222
Q ss_pred HHHHHHHHHhCCCccceEEe-ecC--CCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHcCCccEEEecCc-cHHHHH
Q 035739 115 PALKKSLSALQMEYLDLYLV-HWP--ISSKPGELGFPEPKEDLL-PMDYRGVWEAMEESQMLGLTKSIGLSNF-SRKKIE 189 (335)
Q Consensus 115 ~~~e~sL~~Lg~d~iDl~~l-H~p--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~l~~~Gkir~iGvs~~-~~~~l~ 189 (335)
..+-+.+...|.|.+++.-. +.. +.... ..........++ .....-.++.+.++++.=.+.-||.... +++++.
T Consensus 169 ~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~-~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da~ 247 (296)
T cd04740 169 VEIARAAEEAGADGLTLINTLKGMAIDIETR-KPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDAL 247 (296)
T ss_pred HHHHHHHHHcCCCEEEEECCCcccccccccC-ceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHHH
Confidence 23334566788776655310 000 00000 000000000010 1112235667777777656888998887 578888
Q ss_pred HHHH
Q 035739 190 TILT 193 (335)
Q Consensus 190 ~~~~ 193 (335)
+++.
T Consensus 248 ~~l~ 251 (296)
T cd04740 248 EFLM 251 (296)
T ss_pred HHHH
Confidence 8886
No 111
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=43.47 E-value=1.5e+02 Score=26.39 Aligned_cols=132 Identities=14% Similarity=0.051 Sum_probs=67.3
Q ss_pred CCcceeeCcccCccccccCCCChHHHHHHHHHHH-HcCCCEeeCCCCcC--CHHHHHHHHHHHHHcCCCCCCCceEEeec
Q 035739 26 MPVIGLGCAVDKCLRCAVDKSDTDALKLVVLEAI-KLGYRHFDTAAMYG--TEKALGEAIAEALRLGLVSSREQLFITSK 102 (335)
Q Consensus 26 vs~lg~G~~~~~~~~~~~~~~~~~~~~~~l~~A~-~~Gin~~DtA~~Yg--se~~lG~~l~~~~~~g~~~~R~~~~i~tK 102 (335)
=|+|-+||..+.+ .++++.|+ ..|...+=+|---- ....-+..+-+ -+ +++++.+.-.
T Consensus 8 ~SRL~lGTgky~s-------------~~~m~~ai~aSg~evvTvalRR~~~~~~~~~~~~~~----~i--~~~~~~lLPN 68 (247)
T PF05690_consen 8 RSRLILGTGKYPS-------------PEVMREAIEASGAEVVTVALRRVNLGSKPGGDNILD----YI--DRSGYTLLPN 68 (247)
T ss_dssp S-SEEEE-STSSS-------------HHHHHHHHHHTT-SEEEEECCGSTTTS-TTCHHCCC----CT--TCCTSEEEEE
T ss_pred ecceEEecCCCCC-------------HHHHHHHHHHhCCcEEEEEEecccCCCCCCCccHHH----Hh--cccCCEECCc
Confidence 3889999998863 34566666 45766654432110 00000111111 22 5566655433
Q ss_pred cCCCCCChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecC
Q 035739 103 LWCQNAHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSN 182 (335)
Q Consensus 103 ~~~~~~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~ 182 (335)
.. ..++.+...+..+-..+-++++.|-|=.+..+.. ...+..+++++-+.|+++|-+- +=.++
T Consensus 69 Ta-Gc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~---------------L~PD~~etl~Aae~Lv~eGF~V-lPY~~ 131 (247)
T PF05690_consen 69 TA-GCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKT---------------LLPDPIETLKAAEILVKEGFVV-LPYCT 131 (247)
T ss_dssp -T-T-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT-----------------B-HHHHHHHHHHHHHTT-EE-EEEE-
T ss_pred CC-CCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCC---------------cCCChhHHHHHHHHHHHCCCEE-eecCC
Confidence 31 2455677777777778888999888777765432 2345889999999999999763 33333
Q ss_pred ccHHHHHHHHH
Q 035739 183 FSRKKIETILT 193 (335)
Q Consensus 183 ~~~~~l~~~~~ 193 (335)
-++-...++.+
T Consensus 132 ~D~v~akrL~d 142 (247)
T PF05690_consen 132 DDPVLAKRLED 142 (247)
T ss_dssp S-HHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 44333444433
No 112
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=43.22 E-value=3.3e+02 Score=26.64 Aligned_cols=123 Identities=13% Similarity=0.071 Sum_probs=61.5
Q ss_pred HHHHHHHHcCCCEeeCCCCcCCHH------------HHHHHHHHHHHcCCCCCCCceEEeeccCCCCCChhhHHHHHHHH
Q 035739 53 LVVLEAIKLGYRHFDTAAMYGTEK------------ALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKS 120 (335)
Q Consensus 53 ~~l~~A~~~Gin~~DtA~~Ygse~------------~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~~e~s 120 (335)
+.++...+.|+|.|-..-.-.+++ .+-++++...+.| ...+.+--=.+.+..+.+.+++.++..
T Consensus 164 e~l~~l~~aGvnRiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~~g----~~~v~~DlI~GlPgqT~e~~~~~l~~~ 239 (449)
T PRK09058 164 EKADAALDAGANRFSIGVQSFNTQVRRRAGRKDDREEVLARLEELVARD----RAAVVCDLIFGLPGQTPEIWQQDLAIV 239 (449)
T ss_pred HHHHHHHHcCCCEEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCC----CCcEEEEEEeeCCCCCHHHHHHHHHHH
Confidence 455666678999885554333222 2223444331112 112222222244556677777777765
Q ss_pred HHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCC-CHH---HH-HHHHHHHHHcCCccEEEecCcc
Q 035739 121 LSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPM-DYR---GV-WEAMEESQMLGLTKSIGLSNFS 184 (335)
Q Consensus 121 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~-~~~---~~-~~~L~~l~~~Gkir~iGvs~~~ 184 (335)
+ .|+.++|++|.+.-.....-... ......... +.+ +. -.+.+.|.+.|. +++++|+|.
T Consensus 240 ~-~l~~~~is~y~L~~~pgT~l~~~---~~~g~l~~~~~~~~~~~my~~~~~~L~~~Gy-~~yeis~fa 303 (449)
T PRK09058 240 R-DLGLDGVDLYALNLLPGTPLAKA---VEKGKLPPPATPAERADMYAYGVEFLAKAGW-RQLSNSHWA 303 (449)
T ss_pred H-hcCCCEEEEeccccCCCCHHHHH---HHcCCCCCCCCHHHHHHHHHHHHHHHHHCCC-eEEeeeeee
Confidence 5 48999999998763211100000 000000001 111 22 234566777787 468999987
No 113
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=42.90 E-value=2.5e+02 Score=25.11 Aligned_cols=107 Identities=12% Similarity=0.064 Sum_probs=66.3
Q ss_pred ChhhHHHHHHHHHHHhCCCccceEE-eecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCccHHH
Q 035739 109 HRDHVIPALKKSLSALQMEYLDLYL-VHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSRKK 187 (335)
Q Consensus 109 ~~~~i~~~~e~sL~~Lg~d~iDl~~-lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~ 187 (335)
+.+.+.+..++.+ .-|-|.||+=. --+|..... -.....+.+...++.+++.-.+ -|.+-+++++.
T Consensus 22 ~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~-----------~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v 88 (258)
T cd00423 22 SLDKALEHARRMV-EEGADIIDIGGESTRPGAEPV-----------SVEEELERVIPVLRALAGEPDV-PISVDTFNAEV 88 (258)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcC-----------CHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHH
Confidence 4455555555444 56889999863 223322100 0011134466777777766344 38999999999
Q ss_pred HHHHHHhcCCCCccccCCCCcccccHHHHHHHHHcCCeEEEeccC
Q 035739 188 IETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPL 232 (335)
Q Consensus 188 l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~v~a~~pl 232 (335)
++++++.. .+.++-+ +....+.++++.++++|..++.+..-
T Consensus 89 ~~aaL~~g--~~iINdi--s~~~~~~~~~~l~~~~~~~vV~m~~~ 129 (258)
T cd00423 89 AEAALKAG--ADIINDV--SGGRGDPEMAPLAAEYGAPVVLMHMD 129 (258)
T ss_pred HHHHHHhC--CCEEEeC--CCCCCChHHHHHHHHcCCCEEEECcC
Confidence 99999976 3344433 22222267899999999999987643
No 114
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=42.73 E-value=1.6e+02 Score=25.71 Aligned_cols=72 Identities=13% Similarity=0.152 Sum_probs=49.2
Q ss_pred ChHHHHHHHHHHHHcCCCEeeCCCCcC----CHHHHHHHHHHHHHcCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHH
Q 035739 47 DTDALKLVVLEAIKLGYRHFDTAAMYG----TEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLS 122 (335)
Q Consensus 47 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg----se~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~~e~sL~ 122 (335)
++++.....+.|.+.|..|+=|+..|+ +...+ +.+++. -+++ +-.|....-.+.+...+-++.--.
T Consensus 130 ~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv-~~m~~~-------v~~~--v~IKaaGGirt~~~a~~~i~aGa~ 199 (211)
T TIGR00126 130 TDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDV-RLMRNT-------VGDT--IGVKASGGVRTAEDAIAMIEAGAS 199 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHH-HHHHHH-------hccC--CeEEEeCCCCCHHHHHHHHHHhhH
Confidence 557788999999999999999998886 22211 334443 1222 344543223367888888999999
Q ss_pred HhCCCc
Q 035739 123 ALQMEY 128 (335)
Q Consensus 123 ~Lg~d~ 128 (335)
|+|+++
T Consensus 200 riGts~ 205 (211)
T TIGR00126 200 RIGASA 205 (211)
T ss_pred HhCcch
Confidence 999875
No 115
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=42.49 E-value=1.4e+02 Score=23.30 Aligned_cols=65 Identities=9% Similarity=0.014 Sum_probs=43.8
Q ss_pred CCCceEEeeccCCCCCChhhHHHHHHHHHHHhC--CCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 035739 93 SREQLFITSKLWCQNAHRDHVIPALKKSLSALQ--MEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQ 170 (335)
Q Consensus 93 ~R~~~~i~tK~~~~~~~~~~i~~~~e~sL~~Lg--~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 170 (335)
+|=.+.|+-|++..-..+..+++.+.+.++... +...|++++..+... ..+..++.+.|..|.
T Consensus 44 ~R~G~~VsKK~~~~AV~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~---------------~~~~~~l~~~l~~ll 108 (120)
T PRK04390 44 PRLGLVVGKKTAKRAVERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFD---------------RATAKQAVAELAQLM 108 (120)
T ss_pred ceEEEEEecccCcchhhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcc---------------cCCHHHHHHHHHHHH
Confidence 566677888865444557888888888887554 235699999987542 344666767666665
Q ss_pred Hc
Q 035739 171 ML 172 (335)
Q Consensus 171 ~~ 172 (335)
+.
T Consensus 109 ~k 110 (120)
T PRK04390 109 AK 110 (120)
T ss_pred HH
Confidence 43
No 116
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=42.38 E-value=3e+02 Score=25.98 Aligned_cols=140 Identities=14% Similarity=0.129 Sum_probs=83.2
Q ss_pred CcceeeCcccCcccccc--CCCChHHHHHHHHHHHHcC---CCEeeCCCCcCC-HHHHHHHHHHHHHcCCCCCCCceEEe
Q 035739 27 PVIGLGCAVDKCLRCAV--DKSDTDALKLVVLEAIKLG---YRHFDTAAMYGT-EKALGEAIAEALRLGLVSSREQLFIT 100 (335)
Q Consensus 27 s~lg~G~~~~~~~~~~~--~~~~~~~~~~~l~~A~~~G---in~~DtA~~Ygs-e~~lG~~l~~~~~~g~~~~R~~~~i~ 100 (335)
..+|--|..+-. ++.. ...+.++..+++....+.- +-.+|..+..++ ...+-+.+. ...-++|.
T Consensus 28 ~~~C~RC~~l~h-y~~~~~~~~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~~---------~~piilV~ 97 (360)
T TIGR03597 28 EVYCQRCFRLKH-YNEIQDVELNDDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFVG---------GNPVLLVG 97 (360)
T ss_pred Ceeecchhhhhc-cCccccCCCCHHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHhC---------CCCEEEEE
Confidence 346666666543 2211 2346677777766665322 335686655542 111222221 45568899
Q ss_pred eccCC--CCCChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEE
Q 035739 101 SKLWC--QNAHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSI 178 (335)
Q Consensus 101 tK~~~--~~~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~i 178 (335)
+|+-. .....+.+.+.+.+.++.+|....+++.+..-. .....++++.|.++.+.+.+-.+
T Consensus 98 NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~-----------------g~gv~eL~~~l~~~~~~~~v~~v 160 (360)
T TIGR03597 98 NKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKK-----------------GNGIDELLDKIKKARNKKDVYVV 160 (360)
T ss_pred EchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCC-----------------CCCHHHHHHHHHHHhCCCeEEEE
Confidence 99842 333345666666667777876544666655332 23378899999888777788899
Q ss_pred EecCccHHH-HHHHHH
Q 035739 179 GLSNFSRKK-IETILT 193 (335)
Q Consensus 179 Gvs~~~~~~-l~~~~~ 193 (335)
|.+|.+-.. +..++.
T Consensus 161 G~~nvGKStliN~l~~ 176 (360)
T TIGR03597 161 GVTNVGKSSLINKLLK 176 (360)
T ss_pred CCCCCCHHHHHHHHHh
Confidence 999999555 444544
No 117
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=41.22 E-value=3.2e+02 Score=26.29 Aligned_cols=74 Identities=14% Similarity=0.162 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHcCCccEEEecCccHHHHHHHHHhcCCCCccccCCCCccccc---HHHHHHHHHcCCeEEEeccCCC
Q 035739 160 RGVWEAMEESQMLGLTKSIGLSNFSRKKIETILTFATIPPSINQVEMHPVWQQ---RKLIEFCKAKGIIVTAYSPLGA 234 (335)
Q Consensus 160 ~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~~l~~~~~~gi~v~a~~pl~~ 234 (335)
...+..+..+.+.+.++.+-+...+.+.++++++. +.+.+++..+-||.-+- .++.++|+++|+.++.=..++.
T Consensus 110 ~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~-~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~ 186 (405)
T PRK08776 110 GGSWRLFNALAKKGHFALITADLTDPRSLADALAQ-SPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLS 186 (405)
T ss_pred hHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcc
Confidence 45555556655555566666665567777776642 33445555566665432 6789999999999988776654
No 118
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=41.16 E-value=2.1e+02 Score=24.85 Aligned_cols=124 Identities=9% Similarity=0.126 Sum_probs=67.9
Q ss_pred CChHHHHHHHHHHHHcCCCEeeCC-CCcC--CHHHHHHHHHHHHHcCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHH
Q 035739 46 SDTDALKLVVLEAIKLGYRHFDTA-AMYG--TEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLS 122 (335)
Q Consensus 46 ~~~~~~~~~l~~A~~~Gin~~DtA-~~Yg--se~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~~e~sL~ 122 (335)
.+.++..++++...+.||..|++. +..+ ..+.+.+..+.. +...+...+. ...+.++..++.. +
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~-------~~~~~~~~~~-----~~~~~i~~~~~~~-~ 77 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREAL-------PNARLQALCR-----ANEEDIERAVEAA-K 77 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHH-------HSSEEEEEEE-----SCHHHHHHHHHHH-H
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhh-------cccccceeee-----ehHHHHHHHHHhh-H
Confidence 467888899999999999999999 4443 233344333332 2323322222 2345566666543 5
Q ss_pred HhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCC----HHHHHHHHHHHHHcCCccEEEecCc---cHHHHHHHHH
Q 035739 123 ALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMD----YRGVWEAMEESQMLGLTKSIGLSNF---SRKKIETILT 193 (335)
Q Consensus 123 ~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~----~~~~~~~L~~l~~~Gkir~iGvs~~---~~~~l~~~~~ 193 (335)
..|.+.+.++.-=++.... ...... .+.+.+.++.+++.|.-..+++-.. +++.+.++.+
T Consensus 78 ~~g~~~i~i~~~~s~~~~~-----------~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~ 144 (237)
T PF00682_consen 78 EAGIDIIRIFISVSDLHIR-----------KNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAE 144 (237)
T ss_dssp HTTSSEEEEEEETSHHHHH-----------HHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHH
T ss_pred hccCCEEEecCcccHHHHH-----------HhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHH
Confidence 6787777665322110000 000011 3445666777788898888887544 3555544443
No 119
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=40.89 E-value=2.9e+02 Score=25.32 Aligned_cols=91 Identities=15% Similarity=0.227 Sum_probs=59.3
Q ss_pred HHHhCCCccceEEeec--CCCCCCCCCCCCCCCCCCCCCCHHHH-----HHHHHHHHHcCCccEEEecCccHH-------
Q 035739 121 LSALQMEYLDLYLVHW--PISSKPGELGFPEPKEDLLPMDYRGV-----WEAMEESQMLGLTKSIGLSNFSRK------- 186 (335)
Q Consensus 121 L~~Lg~d~iDl~~lH~--p~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~L~~l~~~Gkir~iGvs~~~~~------- 186 (335)
++-++-.++|+..+.. +... ..+. -+.+.++.++--=|++|+.+.++.
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~------------------~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~ 116 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAI------------------IPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAE 116 (293)
T ss_pred HhhhcccccceEEeeccccccc------------------hHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHH
Confidence 7778888899998884 2111 1111 357778888888899999998855
Q ss_pred HHHHHHHhcCCCCccccCCCCcccc-------c-HHHHHHHHHcCCeEEEeccCC
Q 035739 187 KIETILTFATIPPSINQVEMHPVWQ-------Q-RKLIEFCKAKGIIVTAYSPLG 233 (335)
Q Consensus 187 ~l~~~~~~~~~~~~~~q~~~~~~~~-------~-~~~l~~~~~~gi~v~a~~pl~ 233 (335)
++++.+...+ ++++.+++..+ . .+++++|+++|+.|+-+....
T Consensus 117 E~er~v~~~g----f~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~ 167 (293)
T COG2159 117 ELERRVRELG----FVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAG 167 (293)
T ss_pred HHHHHHHhcC----ceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCC
Confidence 3444444433 33344433332 2 568999999999998865553
No 120
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=40.80 E-value=2.6e+02 Score=24.82 Aligned_cols=64 Identities=13% Similarity=0.026 Sum_probs=34.3
Q ss_pred HHHHHHHHHcCCccEEEecCcc-HHHHHHHHHhcCCCCcccc-CCCCcccccHHHHHHHHHcCCeE
Q 035739 163 WEAMEESQMLGLTKSIGLSNFS-RKKIETILTFATIPPSINQ-VEMHPVWQQRKLIEFCKAKGIIV 226 (335)
Q Consensus 163 ~~~L~~l~~~Gkir~iGvs~~~-~~~l~~~~~~~~~~~~~~q-~~~~~~~~~~~~l~~~~~~gi~v 226 (335)
++.+.++++.-.+.-|...... .+++.++++..+..-+++- .-+..-..-.++...|+++||.+
T Consensus 188 ~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 188 LELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYLAERGIPV 253 (254)
T ss_pred HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHHHHCCCcc
Confidence 3445555555556666666544 6677777776544332221 11111112256778888888754
No 121
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=40.67 E-value=1e+02 Score=27.93 Aligned_cols=156 Identities=17% Similarity=0.213 Sum_probs=76.7
Q ss_pred HHHHHHcCCccEEEecCccHHHHHHHH--HhcCC-----CCccccCCCCc-c-cccHHHHHHHHHcCCeEEEec--cCCC
Q 035739 166 MEESQMLGLTKSIGLSNFSRKKIETIL--TFATI-----PPSINQVEMHP-V-WQQRKLIEFCKAKGIIVTAYS--PLGA 234 (335)
Q Consensus 166 L~~l~~~Gkir~iGvs~~~~~~l~~~~--~~~~~-----~~~~~q~~~~~-~-~~~~~~l~~~~~~gi~v~a~~--pl~~ 234 (335)
+++...+|.| +|+|.-=-..+...+ +..+. .+..+-.++.. . ....+..+.|+..|+...... +.-.
T Consensus 20 l~~~~~k~~V--lGiSGGiDSa~~~~La~~A~~~~~~~~~~~av~mP~~~~~~~~~~da~~~~~~lg~~~~~i~I~~~v~ 97 (268)
T COG0171 20 LKKAGFKGVV--LGLSGGIDSALVLALAVRALGKGDSKENVLAVRLPYGYTVQADEEDAQDLAEALGIDYKEINIKPAVD 97 (268)
T ss_pred HHHcCCCCeE--EEcccChHHHHHHHHHHHHhccccchhheeeEECCCCCccccCHHHHHHHHHHhCCceEEEecHHHHH
Confidence 3333344555 899987533332221 11210 13334445442 2 223678889999988744332 1111
Q ss_pred CCCcCCCCccCChHHHHHHHHHhCCCHHHHHHHHHhhcC-CEEEeCCCCHHHHHHhhccc--------c----ccCCHHH
Q 035739 235 VGKIYGSNQVLENEALKEIAKARGKTVAQVSLRWIVEQG-ATVVIKSLNLERMKQNLGIF--------D----WKLTDDD 301 (335)
Q Consensus 235 ~G~l~~~~~~~~~~~l~~la~~~g~s~~q~al~~~l~~~-~~vi~g~~~~~~l~enl~a~--------~----~~L~~~~ 301 (335)
.++..-........+..++..-=..-....+.|..++- ...++|+.|..++- +..+ + ..|++.+
T Consensus 98 -~~~~~~~~~~~~~~~~~~~~~NikaR~Rm~~lY~~An~~~~lVlGTgn~sE~~--~Gy~TkyGDg~~d~~Pi~~L~Ktq 174 (268)
T COG0171 98 -AFLKKLLKLFLGIYLEDLALGNIKARLRMVILYAIANKLGGLVLGTGNKSELA--LGYFTKYGDGAVDINPIADLYKTQ 174 (268)
T ss_pred -HHHHhhhhhhcccchhhHHHhhhhHHHHHHHHHHHHhhcCCEEEcCCcHHHHh--cCceecccCcccChhhhcCCcHHH
Confidence 10000000000001222222221223455666766665 88889999988764 2211 1 1688888
Q ss_pred HHHHhccCCCCccCCccccCCCCCccccccccC
Q 035739 302 YDKINQIPQHRLIPSDFWVSPQGPFKTLEELWD 334 (335)
Q Consensus 302 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (335)
..+|-+ ...++...+.-||.| |||+
T Consensus 175 V~~La~---~l~ipe~I~~k~PTA-----eL~~ 199 (268)
T COG0171 175 VYALAR---HLGIPEEILKKPPTA-----DLWP 199 (268)
T ss_pred HHHHHH---HcCCCHHHhcCCCCc-----cccC
Confidence 777766 445555666665555 6665
No 122
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=40.50 E-value=74 Score=30.99 Aligned_cols=108 Identities=19% Similarity=0.129 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCceEEeeccCCCC-CChh--------hHHHHH--HHHHHHhCCCccceEEeecCCCCCC
Q 035739 74 TEKALGEAIAEALRLGLVSSREQLFITSKLWCQN-AHRD--------HVIPAL--KKSLSALQMEYLDLYLVHWPISSKP 142 (335)
Q Consensus 74 se~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~-~~~~--------~i~~~~--e~sL~~Lg~d~iDl~~lH~p~~~~~ 142 (335)
..+.+-++-+..+-.. -+..+++++-++.-. ..+- .|.-.+ .+.-+||.+.|+|..-
T Consensus 149 TyeT~~~~~r~h~~gd---L~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~srI~~Rl~t~y~d~~a--------- 216 (561)
T COG2987 149 TYETFAEAGRQHFGGD---LKGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDESRIDKRLRTGYLDEIA--------- 216 (561)
T ss_pred hHHHHHHHHHHhcCCC---ccceEEEecCCCcccccchHHHHhcCceEEEEEeCHHHHHHHHhcchhhhhc---------
Confidence 4455555555544323 477889988875321 1111 111112 2334788888887531
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCccHHHHHHHHHhcC-CCCccccCCCC
Q 035739 143 GELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSRKKIETILTFAT-IPPSINQVEMH 207 (335)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~-~~~~~~q~~~~ 207 (335)
.+++|+++..++.++.|+-..||+-..-++.+.++++..- .+.+.-|.+.+
T Consensus 217 --------------~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~vtDQTsaH 268 (561)
T COG2987 217 --------------ETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLVTDQTSAH 268 (561)
T ss_pred --------------CCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCceeccccccc
Confidence 2388999999999999999999999998899999988643 34455676644
No 123
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=40.32 E-value=3.8e+02 Score=26.55 Aligned_cols=65 Identities=12% Similarity=0.032 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHHcCCcc----EEEecCccHHHHHHHHHhcC-CCCccccCCCCcc--cccHHHHHHHHHcCC
Q 035739 158 DYRGVWEAMEESQMLGLTK----SIGLSNFSRKKIETILTFAT-IPPSINQVEMHPV--WQQRKLIEFCKAKGI 224 (335)
Q Consensus 158 ~~~~~~~~L~~l~~~Gkir----~iGvs~~~~~~l~~~~~~~~-~~~~~~q~~~~~~--~~~~~~l~~~~~~gi 224 (335)
..++..++++.+++.|..- -+|+-+-+.+.+.+.++... .++...++ +.+ .+..++.+.+++.+.
T Consensus 321 t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~~~~~--~~~tP~PGT~l~~~~~~~~~ 392 (497)
T TIGR02026 321 TTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPDQANW--LMYTPWPFTSLFGELSDRVE 392 (497)
T ss_pred CHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCCceEE--EEecCCCCcHHHHHHHhhcc
Confidence 3678889999999998643 35666777777766665432 33333333 333 233567777777654
No 124
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=39.74 E-value=1.2e+02 Score=29.34 Aligned_cols=80 Identities=11% Similarity=0.112 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCccHHHHHHHHHhcCCCCccccCCCCccccc---HHHHHHHHHcCCeEEEeccCCCC
Q 035739 159 YRGVWEAMEESQMLGLTKSIGLSNFSRKKIETILTFATIPPSINQVEMHPVWQQ---RKLIEFCKAKGIIVTAYSPLGAV 235 (335)
Q Consensus 159 ~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~~l~~~~~~gi~v~a~~pl~~~ 235 (335)
+..++.-++++.++.-|....+-.-+...+.+.+...+.+.+++..+-||..+- ..+.+.|+++|+.++.-+.|+.
T Consensus 112 YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfat- 190 (396)
T COG0626 112 YGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFAT- 190 (396)
T ss_pred cchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCccc-
Confidence 557888888888888888887777776666666554345677888999998774 6789999999999999888887
Q ss_pred CCcC
Q 035739 236 GKIY 239 (335)
Q Consensus 236 G~l~ 239 (335)
+.+.
T Consensus 191 P~~q 194 (396)
T COG0626 191 PVLQ 194 (396)
T ss_pred cccc
Confidence 6554
No 125
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=39.57 E-value=2.1e+02 Score=24.37 Aligned_cols=41 Identities=17% Similarity=0.070 Sum_probs=25.2
Q ss_pred ccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCccHHHH
Q 035739 128 YLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSRKKI 188 (335)
Q Consensus 128 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l 188 (335)
.+|.++||..+. .+....+.+......++.+|++++....+
T Consensus 73 ~~d~Vqlhg~e~--------------------~~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 73 GLDVVQLHGDES--------------------PEYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred CCCEEEECCCCC--------------------HHHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 368899997521 12334443333346888999998865443
No 126
>PRK05588 histidinol-phosphatase; Provisional
Probab=39.52 E-value=2.7e+02 Score=24.64 Aligned_cols=80 Identities=10% Similarity=0.131 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHcCCCEeeCCCCcC---C-H----HHHHHHHHHHHHcCCCCCCCceEEeeccCCCCCChhhHHHHHHHH
Q 035739 49 DALKLVVLEAIKLGYRHFDTAAMYG---T-E----KALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKS 120 (335)
Q Consensus 49 ~~~~~~l~~A~~~Gin~~DtA~~Yg---s-e----~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~~e~s 120 (335)
....+.+++|.+.|+..+ .+++.. . . ..+-..+++. . .+ +.-+|++..-++. .++ ....+++.
T Consensus 16 ~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~~~i-~-~~--~~~~I~~GiE~~~---~~~-~~~~~~~~ 86 (255)
T PRK05588 16 MKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYFNKY-S-KY--RNNKLLLGIELGM---EKD-LIEENKEL 86 (255)
T ss_pred cCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHHHHH-H-HH--hcCCcceEEEecc---cCC-CHHHHHHH
Confidence 347789999999999988 666631 0 0 0111222221 0 11 2234555544432 222 35667778
Q ss_pred HHHhCCCccceEEeecCC
Q 035739 121 LSALQMEYLDLYLVHWPI 138 (335)
Q Consensus 121 L~~Lg~d~iDl~~lH~p~ 138 (335)
|++...||+ +.-+|+..
T Consensus 87 l~~~~~D~v-igSvH~~~ 103 (255)
T PRK05588 87 INKYEFDYV-IGSIHLVD 103 (255)
T ss_pred HhhCCCCeE-EEeEEeeC
Confidence 888888887 78899864
No 127
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=39.00 E-value=2.8e+02 Score=24.72 Aligned_cols=24 Identities=4% Similarity=0.044 Sum_probs=21.3
Q ss_pred CChHHHHHHHHHHHHcCCCEeeCC
Q 035739 46 SDTDALKLVVLEAIKLGYRHFDTA 69 (335)
Q Consensus 46 ~~~~~~~~~l~~A~~~Gin~~DtA 69 (335)
.+.++..++++...+.||..++.+
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg 42 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVG 42 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 467888899999999999999997
No 128
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=38.69 E-value=3.4e+02 Score=25.50 Aligned_cols=139 Identities=11% Similarity=0.134 Sum_probs=74.9
Q ss_pred ChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCccHHHH
Q 035739 109 HRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSRKKI 188 (335)
Q Consensus 109 ~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l 188 (335)
+++.+.+.+++. +..|..++.+..-+.|+ ...+.+.+.++.+++.. -.+-++.+++..+
T Consensus 80 ~~eeI~~~a~~~-~~~G~~~v~l~~G~~p~------------------~~~~~~~e~i~~Ik~~~--p~i~i~~~~~~ei 138 (351)
T TIGR03700 80 SLEEIVARVKEA-YAPGATEVHIVGGLHPN------------------LPFEWYLDMIRTLKEAY--PDLHVKAFTAVEI 138 (351)
T ss_pred CHHHHHHHHHHH-HHCCCcEEEEecCCCCC------------------CCHHHHHHHHHHHHHHC--CCceEEeCCHHHH
Confidence 456666655533 45777777766444441 22556667777777664 2344555555555
Q ss_pred HHHHHhcCCCCccccCCCCcccccHHHHHHHHHcCCeEEEeccCCCCCCcCCCCccCChHHHHHHHHHhCCCHHH--HHH
Q 035739 189 ETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLENEALKEIAKARGKTVAQ--VSL 266 (335)
Q Consensus 189 ~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~g~s~~q--~al 266 (335)
..+....+. ...+.+...++.|+..+... |. .....+.++.+++. +.+..+ -++
T Consensus 139 ~~~~~~~g~-------------~~~e~l~~LkeAGld~~~~~-----g~-----E~~~~~v~~~i~~~-~~~~~~~l~~i 194 (351)
T TIGR03700 139 HHFSKISGL-------------PTEEVLDELKEAGLDSMPGG-----GA-----EIFAEEVRQQICPE-KISAERWLEIH 194 (351)
T ss_pred HHHHHHcCC-------------CHHHHHHHHHHcCCCcCCCC-----cc-----cccCHHHHhhcCCC-CCCHHHHHHHH
Confidence 544333321 13567888888887655421 11 11223344444433 244444 277
Q ss_pred HHHhhcC----CEEEeCCC-CHHHHHHhhcc
Q 035739 267 RWIVEQG----ATVVIKSL-NLERMKQNLGI 292 (335)
Q Consensus 267 ~~~l~~~----~~vi~g~~-~~~~l~enl~a 292 (335)
+++...| +..++|.- +.++..+.+..
T Consensus 195 ~~a~~~Gi~~~sg~i~GlgEt~edrv~~l~~ 225 (351)
T TIGR03700 195 RTAHELGLKTNATMLYGHIETPAHRVDHMLR 225 (351)
T ss_pred HHHHHcCCCcceEEEeeCCCCHHHHHHHHHH
Confidence 7777776 56778875 45555444443
No 129
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=38.27 E-value=4.4e+02 Score=26.64 Aligned_cols=144 Identities=9% Similarity=0.023 Sum_probs=82.3
Q ss_pred ChHHHHHHHHHHHHcCCCEe-eCCCCcCCHHHHHHHHHHHHHcCCCCCCCceE---EeeccC--CCCCChhhHHHHHHHH
Q 035739 47 DTDALKLVVLEAIKLGYRHF-DTAAMYGTEKALGEAIAEALRLGLVSSREQLF---ITSKLW--CQNAHRDHVIPALKKS 120 (335)
Q Consensus 47 ~~~~~~~~l~~A~~~Gin~~-DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~~~---i~tK~~--~~~~~~~~i~~~~e~s 120 (335)
+.++-.+-+..|.+.|-..+ |-+ ..|.-..+-+++-.. ..+ +-..|= ..-|+. ..+.+.+.+.+.+++.
T Consensus 230 ~ieeEveK~~~A~~~GADtvMDLS-TGgdi~~~R~~Il~~--spv--PvGTVPiYqA~~~~~~~~~~lt~e~~~d~ieeQ 304 (607)
T PRK09284 230 SIEEEVEKMVWATRWGADTVMDLS-TGKNIHETREWILRN--SPV--PIGTVPIYQALEKVNGVAEDLTWEIFRDTLIEQ 304 (607)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecC-CCCCHHHHHHHHHHc--CCC--CccCccHHHHHHHhcCChhhCCHHHHHHHHHHH
Confidence 44555677899999997644 655 444433344443321 011 111111 111221 2345667777777666
Q ss_pred HHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCccHHHHHHHHHhcCCCCc
Q 035739 121 LSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSRKKIETILTFATIPPS 200 (335)
Q Consensus 121 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~ 200 (335)
.+ +-+|.+-||.- -..+.++.++ + |..|+-+-...-+....-...
T Consensus 305 Ae----qGVDf~TIHaG-----------------------v~~~~v~~~~--~--R~tgIVSRGGSima~Wml~h~---- 349 (607)
T PRK09284 305 AE----QGVDYFTIHAG-----------------------VLLRYVPLTA--K--RVTGIVSRGGSIMAKWCLAHH---- 349 (607)
T ss_pred HH----hCCCEEEEChh-----------------------hHHHHHHHHh--C--cccCcccCCHHHHHHHHHHcC----
Confidence 54 44677999964 1334455554 3 778888887776665544332
Q ss_pred cccCCCCccccc-HHHHHHHHHcCCeEEEeccCCC
Q 035739 201 INQVEMHPVWQQ-RKLIEFCKAKGIIVTAYSPLGA 234 (335)
Q Consensus 201 ~~q~~~~~~~~~-~~~l~~~~~~gi~v~a~~pl~~ 234 (335)
.=|++..+ .++++.|++++|.+----.|..
T Consensus 350 ----kENplYe~FD~ileI~k~YDVtlSLGDGLRP 380 (607)
T PRK09284 350 ----KENFLYTHFEEICEIMAAYDVSFSLGDGLRP 380 (607)
T ss_pred ----CcCcHHHHHHHHHHHHHHhCeeeeccCCcCC
Confidence 23445444 7899999999998865444443
No 130
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=38.21 E-value=58 Score=28.60 Aligned_cols=94 Identities=18% Similarity=0.247 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHHcCCccEEEe----cCccHHHHHHHHHhcCCCCccccCCCCccccc--HHHHHHHHHcCCeEEEecc
Q 035739 158 DYRGVWEAMEESQMLGLTKSIGL----SNFSRKKIETILTFATIPPSINQVEMHPVWQQ--RKLIEFCKAKGIIVTAYSP 231 (335)
Q Consensus 158 ~~~~~~~~L~~l~~~Gkir~iGv----s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~l~~~~~~gi~v~a~~p 231 (335)
..+++.++|.+++ +..|.. |.+....++.+.+..+.. .|.|++.. .+++...-+.|..++.-+.
T Consensus 74 eve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl~------~~~PLWg~d~~ell~e~~~~Gf~~~Iv~V 143 (223)
T COG2102 74 EVEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGLK------VYAPLWGRDPEELLEEMVEAGFEAIIVAV 143 (223)
T ss_pred hHHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCCE------EeecccCCCHHHHHHHHHHcCCeEEEEEE
Confidence 4777888888887 444443 444455677777776653 56677764 6777777777765555444
Q ss_pred CCCCCCc---CCCC-ccCChHHHHHHHHHhCCCHH
Q 035739 232 LGAVGKI---YGSN-QVLENEALKEIAKARGKTVA 262 (335)
Q Consensus 232 l~~~G~l---~~~~-~~~~~~~l~~la~~~g~s~~ 262 (335)
-+. |+- .|.. +....+.++.++++||+.|+
T Consensus 144 sa~-gL~~~~lGr~i~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 144 SAE-GLDESWLGRRIDREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred ecc-CCChHHhCCccCHHHHHHHHHHHHhcCCCcc
Confidence 443 432 1111 11224678888889988764
No 131
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=38.17 E-value=1.9e+02 Score=25.89 Aligned_cols=104 Identities=12% Similarity=0.034 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHc-CCccEEEec---CccHHH
Q 035739 112 HVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQML-GLTKSIGLS---NFSRKK 187 (335)
Q Consensus 112 ~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-Gkir~iGvs---~~~~~~ 187 (335)
.-+..+-+.|.++|+++|++-+......... ... ....+ .++.++.+++. +..+...++ ......
T Consensus 22 ~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~---~~~-----~~~~~---~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (263)
T cd07943 22 EQVRAIARALDAAGVPLIEVGHGDGLGGSSL---NYG-----FAAHT---DEEYLEAAAEALKQAKLGVLLLPGIGTVDD 90 (263)
T ss_pred HHHHHHHHHHHHcCCCEEEeecCCCCCCccc---ccC-----CCCCC---hHHHHHHHHHhccCCEEEEEecCCccCHHH
Confidence 3455566669999999999987642211000 000 00111 34555555433 346666654 223566
Q ss_pred HHHHHHhcCCCCccccC--CCCcccccHHHHHHHHHcCCeEEEe
Q 035739 188 IETILTFATIPPSINQV--EMHPVWQQRKLIEFCKAKGIIVTAY 229 (335)
Q Consensus 188 l~~~~~~~~~~~~~~q~--~~~~~~~~~~~l~~~~~~gi~v~a~ 229 (335)
++.+.+. +++ .+.+ ..|....-.+.+++++++|..+...
T Consensus 91 i~~a~~~-g~~--~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 91 LKMAADL-GVD--VVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred HHHHHHc-CCC--EEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 7666653 333 3322 2222222367889999999877664
No 132
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=38.13 E-value=1.8e+02 Score=23.60 Aligned_cols=63 Identities=6% Similarity=0.068 Sum_probs=44.6
Q ss_pred CCCceEEeeccCCCCCChhhHHHHHHHHHHHhC--CCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 035739 93 SREQLFITSKLWCQNAHRDHVIPALKKSLSALQ--MEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQ 170 (335)
Q Consensus 93 ~R~~~~i~tK~~~~~~~~~~i~~~~e~sL~~Lg--~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 170 (335)
.|=.+.|+-|++. -..++.|++.+.++++.+. +...|++++...... .++.++...|.++.
T Consensus 46 ~RlG~sVSKKvg~-AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~----------------~~f~~L~~~l~~~~ 108 (138)
T PRK00730 46 CKVGITVSKKFGK-AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQ----------------PDFLKLLQDFLQQI 108 (138)
T ss_pred ceEEEEEeccccc-chhHHHHHHHHHHHHHHhhcccCCceEEEEeccccC----------------CCHHHHHHHHHHHH
Confidence 4666888888764 4557889999998888763 456899999987542 33666666666655
Q ss_pred Hc
Q 035739 171 ML 172 (335)
Q Consensus 171 ~~ 172 (335)
++
T Consensus 109 ~~ 110 (138)
T PRK00730 109 PE 110 (138)
T ss_pred HH
Confidence 43
No 133
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=37.95 E-value=40 Score=24.66 Aligned_cols=72 Identities=17% Similarity=0.143 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCccHHHHHH
Q 035739 111 DHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSRKKIET 190 (335)
Q Consensus 111 ~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~ 190 (335)
+++-...+.....||+...||..+..-.+. ...+.+++.|...++.. | ...+...|..
T Consensus 10 ~~LG~~W~~Lar~Lgls~~~I~~i~~~~p~----------------~l~eQv~~mL~~W~~r~-----G-~~ATv~~L~~ 67 (83)
T cd08319 10 QRLGPEWEQVLLDLGLSQTDIYRCKENHPH----------------NVQSQIVEALVKWRQRF-----G-KKATVQSLIQ 67 (83)
T ss_pred HHHhhhHHHHHHHcCCCHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHHhc-----C-CCCcHHHHHH
Confidence 456677888889999999999888753221 12567888888888762 2 3556788999
Q ss_pred HHHhcCCCCccccC
Q 035739 191 ILTFATIPPSINQV 204 (335)
Q Consensus 191 ~~~~~~~~~~~~q~ 204 (335)
+++.+++++.+.|+
T Consensus 68 aL~~~~~~~~~~~~ 81 (83)
T cd08319 68 SLKAVEVDPSVLQF 81 (83)
T ss_pred HHHHcCCCHHHHHh
Confidence 99988887766553
No 134
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=37.70 E-value=98 Score=23.33 Aligned_cols=61 Identities=15% Similarity=0.125 Sum_probs=41.7
Q ss_pred HHHHHHHHHHcCCccEEEecCccHHHHHHHHHhcCCCCccccCCCCcccccHHHHHHHHHcCCeEEEe
Q 035739 162 VWEAMEESQMLGLTKSIGLSNFSRKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAY 229 (335)
Q Consensus 162 ~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~v~a~ 229 (335)
+-.+|+..++.|++. .|. .+....++......+++-...+. .....+..+|++++|+++.|
T Consensus 4 ~~~~l~~a~ragkl~-~G~-----~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Ip~~~~ 64 (99)
T PRK01018 4 FNRELRVAVDTGKVI-LGS-----KRTIKAIKLGKAKLVIVASNCPK-DIKEDIEYYAKLSGIPVYEY 64 (99)
T ss_pred HHHHHHHHHHcCCEE-EcH-----HHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEE
Confidence 345688888888873 443 45666666666555565555433 33477899999999998776
No 135
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=37.52 E-value=1.4e+02 Score=32.00 Aligned_cols=54 Identities=20% Similarity=0.286 Sum_probs=42.3
Q ss_pred ccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCccHHHHHHHHHhcC
Q 035739 128 YLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSRKKIETILTFAT 196 (335)
Q Consensus 128 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~ 196 (335)
...+++|..|...-+ +.....+|+.+.++++.|+ ++=+.+|+.++.+.+.....
T Consensus 716 ~p~vi~LDEPstGmD-------------P~arr~lW~ii~~~~k~g~--aiiLTSHsMeE~EaLCtR~a 769 (885)
T KOG0059|consen 716 DPSVILLDEPSTGLD-------------PKARRHLWDIIARLRKNGK--AIILTSHSMEEAEALCTRTA 769 (885)
T ss_pred CCCEEEecCCCCCCC-------------HHHHHHHHHHHHHHHhcCC--EEEEEcCCHHHHHHHhhhhh
Confidence 456778887754322 2336779999999999999 89999999999999877554
No 136
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=37.33 E-value=2.4e+02 Score=25.97 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=33.3
Q ss_pred CccHHHHHHHHHhc-----CCCCccccCCCCccccc------HHHHHHHHHcCCeEEEeccCC
Q 035739 182 NFSRKKIETILTFA-----TIPPSINQVEMHPVWQQ------RKLIEFCKAKGIIVTAYSPLG 233 (335)
Q Consensus 182 ~~~~~~l~~~~~~~-----~~~~~~~q~~~~~~~~~------~~~l~~~~~~gi~v~a~~pl~ 233 (335)
..+.+.+++.++.. +....++-.+.||.-.. .+++++|+++|+-++.=..++
T Consensus 129 ~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~ 191 (363)
T PF00155_consen 129 HLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYS 191 (363)
T ss_dssp EETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTT
T ss_pred cccccccccccccccccccccceeeecccccccccccccccccchhhhhcccccceeeeecee
Confidence 55678888887764 22234444455554331 567788999999888765554
No 137
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=37.20 E-value=17 Score=35.49 Aligned_cols=25 Identities=16% Similarity=0.132 Sum_probs=20.3
Q ss_pred CCccEEEecCccHHHHHHHHHhcCC
Q 035739 173 GLTKSIGLSNFSRKKIETILTFATI 197 (335)
Q Consensus 173 Gkir~iGvs~~~~~~l~~~~~~~~~ 197 (335)
++|.+||+......-|.+++...+.
T Consensus 8 ~~iHfIGIgG~GMsglA~iL~~~G~ 32 (459)
T COG0773 8 PKIHFIGIGGIGMSGLAEILLNLGY 32 (459)
T ss_pred ceEEEEeeccccHHHHHHHHHhCCC
Confidence 4788999999998888888776553
No 138
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=37.14 E-value=4.1e+02 Score=25.98 Aligned_cols=59 Identities=12% Similarity=0.205 Sum_probs=35.3
Q ss_pred CccEEEecC-----ccHHHHHHHHHhcC----CCC-ccccCCCCcccccHHHHHHHHHcCCeEEEeccC
Q 035739 174 LTKSIGLSN-----FSRKKIETILTFAT----IPP-SINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPL 232 (335)
Q Consensus 174 kir~iGvs~-----~~~~~l~~~~~~~~----~~~-~~~q~~~~~~~~~~~~l~~~~~~gi~v~a~~pl 232 (335)
.|+.|-+.. .++.++.++++... +.. .-+-++.|+..-..+.++.+++.|+--+..+.-
T Consensus 103 ~v~~i~fgGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQ 171 (453)
T PRK13347 103 RVSQLHWGGGTPTILNPDQFERLMAALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQ 171 (453)
T ss_pred eEEEEEEcCcccccCCHHHHHHHHHHHHHhCCCCCCceEEEEeccccCCHHHHHHHHHcCCCEEEECCC
Confidence 455555433 34677777776542 111 112334555444588999999999877776544
No 139
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=36.99 E-value=2.4e+02 Score=28.17 Aligned_cols=109 Identities=7% Similarity=0.015 Sum_probs=63.3
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCC
Q 035739 71 MYGTEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEP 150 (335)
Q Consensus 71 ~Ygse~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~ 150 (335)
.+|+++.|-++|++..... +.+-++|.+=+- ++-|-..++...++++.+.++++.++.|......
T Consensus 66 v~G~~~~L~~aI~~~~~~~---~P~~I~V~sTC~-----selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~------- 130 (511)
T TIGR01278 66 ARGSQTRLVDTVRRVDDRF---KPDLIVVTPSCT-----SSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKE------- 130 (511)
T ss_pred ecchHHHHHHHHHHHHHhc---CCCEEEEeCCCh-----HHHhccCHHHHHHHhccCCCcEEEecCCCcccch-------
Confidence 3778888888888765432 344455655442 2445455555566666556889999988654320
Q ss_pred CCCCCCCCHHHHHHHHHH-H----------HHcCCccEEEecCc------cHHHHHHHHHhcCCCC
Q 035739 151 KEDLLPMDYRGVWEAMEE-S----------QMLGLTKSIGLSNF------SRKKIETILTFATIPP 199 (335)
Q Consensus 151 ~~~~~~~~~~~~~~~L~~-l----------~~~Gkir~iGvs~~------~~~~l~~~~~~~~~~~ 199 (335)
......+++++-+ + .+.++|--||.++. +...+.++++..++.+
T Consensus 131 -----~~g~~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~v 191 (511)
T TIGR01278 131 -----NQAADRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEV 191 (511)
T ss_pred -----hHHHHHHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeE
Confidence 0112223332221 1 13456888998763 4566888888877553
No 140
>PRK10799 metal-binding protein; Provisional
Probab=36.94 E-value=52 Score=29.37 Aligned_cols=44 Identities=20% Similarity=0.200 Sum_probs=27.5
Q ss_pred HHHHHHcCCCEeeCCCCcCCHHHHHHHHHHHHHcCCCCCCCceEEee
Q 035739 55 VLEAIKLGYRHFDTAAMYGTEKALGEAIAEALRLGLVSSREQLFITS 101 (335)
Q Consensus 55 l~~A~~~Gin~~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~~~i~t 101 (335)
...|.+.|++++|.. ||.+|...-+.|.+++.+.. +-+-.||-+
T Consensus 200 ~~~A~~~gl~li~~G-H~~sE~~~~~~la~~L~~~~--~~~~~~i~~ 243 (247)
T PRK10799 200 IHSAREQGLHFYAAG-HHATERGGIRALSEWLNENT--DLDVTFIDI 243 (247)
T ss_pred HHHHHHCCCeEEEcC-chHHHHHHHHHHHHHHHHhc--CCCEEEeCC
Confidence 466788899999866 77788775555665554433 333344443
No 141
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=36.83 E-value=4e+02 Score=26.05 Aligned_cols=129 Identities=16% Similarity=0.192 Sum_probs=70.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCccEEEecC-----c----------c-HHHHHHHHHhcCC---CCccccCCCCcccccH
Q 035739 153 DLLPMDYRGVWEAMEESQMLGLTKSIGLSN-----F----------S-RKKIETILTFATI---PPSINQVEMHPVWQQR 213 (335)
Q Consensus 153 ~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~-----~----------~-~~~l~~~~~~~~~---~~~~~q~~~~~~~~~~ 213 (335)
.......+++.+.++.|++.| ++.|-+.. + . .+.+.++.+.... ...+.....++..-..
T Consensus 177 ~~rsr~~e~Vv~Ei~~l~~~G-~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ir~~s~~p~~i~~ 255 (455)
T PRK14335 177 REISRDLDAILQEIDVLSEKG-VREITLLGQNVNSYRGRDREGNIVTFPQLLRHIVRRAEVTDQIRWIRFMSSHPKDLSD 255 (455)
T ss_pred CCccCCHHHHHHHHHHHHHCC-CeEEEEEeecccccccccccCCccCHHHHHHHHHHhhcccCCceEEEEeecCcccCCH
Confidence 344567899999999999997 35553322 1 1 1222333211111 1123333345544457
Q ss_pred HHHHHHHHc--CCeEEEeccCCCCCCcCCCCccCChHHHHHHHHHhCCCHHHHHHHHHhhc--C----CEEEeCC--CCH
Q 035739 214 KLIEFCKAK--GIIVTAYSPLGAVGKIYGSNQVLENEALKEIAKARGKTVAQVSLRWIVEQ--G----ATVVIKS--LNL 283 (335)
Q Consensus 214 ~~l~~~~~~--gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~g~s~~q~al~~~l~~--~----~~vi~g~--~~~ 283 (335)
++++.+++. |...+-. |+-+ | ..+.++.+.+.+...-..-+++.+... + +..|+|. -+.
T Consensus 256 ell~~m~~~~~gc~~l~i-glQS-g---------sd~vLk~m~R~~t~e~~~~~v~~ir~~~pgi~i~~d~IvGfPgET~ 324 (455)
T PRK14335 256 DLIATIAQESRLCRLVHL-PVQH-G---------SNGVLKRMNRSYTREHYLSLVGKLKASIPNVALSTDILIGFPGETE 324 (455)
T ss_pred HHHHHHHhCCCCCCeEEE-ccCc-C---------CHHHHHHcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCH
Confidence 899988874 4444433 3322 2 345566555544443444566676665 3 4577884 467
Q ss_pred HHHHHhhccc
Q 035739 284 ERMKQNLGIF 293 (335)
Q Consensus 284 ~~l~enl~a~ 293 (335)
+.+++.++.+
T Consensus 325 edf~~Tl~~i 334 (455)
T PRK14335 325 EDFEQTLDLM 334 (455)
T ss_pred HHHHHHHHHH
Confidence 7777777654
No 142
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=36.69 E-value=1.2e+02 Score=27.20 Aligned_cols=50 Identities=14% Similarity=0.205 Sum_probs=36.8
Q ss_pred CccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCccHHHHHHH
Q 035739 127 EYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSRKKIETI 191 (335)
Q Consensus 127 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~ 191 (335)
...|+++|..|....+ .....++++-|.+|+++|+. |=+.+|+...+.+.
T Consensus 156 ~~p~lllLDEP~~gvD-------------~~~~~~i~~lL~~l~~eg~t--Il~vtHDL~~v~~~ 205 (254)
T COG1121 156 QNPDLLLLDEPFTGVD-------------VAGQKEIYDLLKELRQEGKT--VLMVTHDLGLVMAY 205 (254)
T ss_pred cCCCEEEecCCcccCC-------------HHHHHHHHHHHHHHHHCCCE--EEEEeCCcHHhHhh
Confidence 4678999998876543 23366789999999999884 77888886665544
No 143
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=36.56 E-value=2.1e+02 Score=25.49 Aligned_cols=80 Identities=15% Similarity=0.171 Sum_probs=58.2
Q ss_pred CCCChHHHHHHHHHHHHcCCCEeeCCCCcC------CHHHHHHHHHHHHHcCCCCCCCceEEeeccCCCCC---C-----
Q 035739 44 DKSDTDALKLVVLEAIKLGYRHFDTAAMYG------TEKALGEAIAEALRLGLVSSREQLFITSKLWCQNA---H----- 109 (335)
Q Consensus 44 ~~~~~~~~~~~l~~A~~~Gin~~DtA~~Yg------se~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~---~----- 109 (335)
...+.+++.+++.--..+||+.=-.++.-| .|.-+.+++.-.=..|+ ||+.+.=..++++.+. +
T Consensus 26 ~gL~e~eANemlAlL~~~gI~A~K~~~~~g~~~l~Ve~~~fa~Av~iL~~~Gl--Pr~~f~~l~d~Fp~dgLVsSP~eEk 103 (246)
T COG4669 26 TGLSEKEANEMLALLMSHGINAEKKADKDGGTSLLVEESDFAEAVEILNQNGL--PRKKFTTLGDIFPKDGLVSSPTEEK 103 (246)
T ss_pred cCCCHhHHHHHHHHHHHcCCcceeeccCCCceEEEEcHHHHHHHHHHHHhcCC--CCCCCCcHHHhCCcccccCCcHHHH
Confidence 345889999999999999999887777665 57778888755445598 8888766666665432 1
Q ss_pred ---hhhHHHHHHHHHHHhC
Q 035739 110 ---RDHVIPALKKSLSALQ 125 (335)
Q Consensus 110 ---~~~i~~~~e~sL~~Lg 125 (335)
...+..+++++|+.+-
T Consensus 104 aR~~~~~eQ~le~tLs~mD 122 (246)
T COG4669 104 ARLNYAKEQQLEQTLSKMD 122 (246)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 2345677888888873
No 144
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=36.50 E-value=3.5e+02 Score=25.07 Aligned_cols=127 Identities=9% Similarity=0.110 Sum_probs=72.7
Q ss_pred ChHHHHHHHHHHHHcCCCEeeCC----------CCcC-----CHHHHHHHHHHHHHcCCCCCCCceEEeeccCCC-CCCh
Q 035739 47 DTDALKLVVLEAIKLGYRHFDTA----------AMYG-----TEKALGEAIAEALRLGLVSSREQLFITSKLWCQ-NAHR 110 (335)
Q Consensus 47 ~~~~~~~~l~~A~~~Gin~~DtA----------~~Yg-----se~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~-~~~~ 110 (335)
+.++..+..+.+.+.|+..||.- ..+| .-+.+.+.++.... . =++-|+.|+... +.+.
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~-a-----~d~pv~vKiR~G~~~~~ 148 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVN-A-----VDVPVTLKIRTGWAPEH 148 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHH-h-----cCCceEEEEEccccCCc
Confidence 66777778888888999999942 2334 24455555554311 1 134577777321 1111
Q ss_pred hhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCc-cHHHHH
Q 035739 111 DHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNF-SRKKIE 189 (335)
Q Consensus 111 ~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~-~~~~l~ 189 (335)
.... .+-+.++..|. |.+.+|.-..... +. -..-|+.+.++++.=.|--||.... +.+++.
T Consensus 149 ~~~~-~~a~~le~~G~---d~i~vh~rt~~~~-----------~~---G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~ 210 (321)
T PRK10415 149 RNCV-EIAQLAEDCGI---QALTIHGRTRACL-----------FN---GEAEYDSIRAVKQKVSIPVIANGDITDPLKAR 210 (321)
T ss_pred chHH-HHHHHHHHhCC---CEEEEecCccccc-----------cC---CCcChHHHHHHHHhcCCcEEEeCCCCCHHHHH
Confidence 1122 23334667774 6677885432100 00 0123677778777767888888887 577888
Q ss_pred HHHHhcCC
Q 035739 190 TILTFATI 197 (335)
Q Consensus 190 ~~~~~~~~ 197 (335)
++++..+.
T Consensus 211 ~~l~~~ga 218 (321)
T PRK10415 211 AVLDYTGA 218 (321)
T ss_pred HHHhccCC
Confidence 88876553
No 145
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=36.34 E-value=88 Score=29.50 Aligned_cols=64 Identities=8% Similarity=0.048 Sum_probs=28.0
Q ss_pred HHHHHHHHHcCCcc-EEEecCccHHHHHHHHHhcCCCCccccCCCCcc---cccHHHHHHHHHcCCeEEE
Q 035739 163 WEAMEESQMLGLTK-SIGLSNFSRKKIETILTFATIPPSINQVEMHPV---WQQRKLIEFCKAKGIIVTA 228 (335)
Q Consensus 163 ~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~~l~~~~~~gi~v~a 228 (335)
++.+.+|++...+. +.|=+.++..++.++++...+ .++|+..... ..-.++..+|+++|+.++.
T Consensus 228 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~--d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~ 295 (365)
T cd03318 228 LDGLARLRSRNRVPIMADESVSGPADAFELARRGAA--DVFSLKIAKSGGLRRAQKVAAIAEAAGIALYG 295 (365)
T ss_pred HHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCC--CeEEEeecccCCHHHHHHHHHHHHHcCCceee
Confidence 34444555444333 444444455555555544322 2333322211 1114455556666665554
No 146
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=36.10 E-value=3.1e+02 Score=24.37 Aligned_cols=94 Identities=16% Similarity=0.202 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHc-CCccEEEecCccHHHHHH
Q 035739 112 HVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQML-GLTKSIGLSNFSRKKIET 190 (335)
Q Consensus 112 ~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-Gkir~iGvs~~~~~~l~~ 190 (335)
.-+..+-+.|.++|+++|++-+ |.. -+.-++.++.+.+. ..++..+++..+.+.++.
T Consensus 20 ~~k~~i~~~L~~~Gv~~iE~g~---p~~-------------------~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~ 77 (259)
T cd07939 20 EEKLAIARALDEAGVDEIEVGI---PAM-------------------GEEEREAIRAIVALGLPARLIVWCRAVKEDIEA 77 (259)
T ss_pred HHHHHHHHHHHHcCCCEEEEec---CCC-------------------CHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHH
Confidence 4455666679999999999852 311 11235566666664 347777787777888887
Q ss_pred HHHhcCCCCccccCCCCcccc--------------cHHHHHHHHHcCCeEEE
Q 035739 191 ILTFATIPPSINQVEMHPVWQ--------------QRKLIEFCKAKGIIVTA 228 (335)
Q Consensus 191 ~~~~~~~~~~~~q~~~~~~~~--------------~~~~l~~~~~~gi~v~a 228 (335)
+.+. +++..-+-+..|..+. -.+.+++|+++|+.+..
T Consensus 78 a~~~-g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~ 128 (259)
T cd07939 78 ALRC-GVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSV 128 (259)
T ss_pred HHhC-CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 7764 3332222222222211 03578899999987653
No 147
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=36.08 E-value=1.4e+02 Score=26.62 Aligned_cols=66 Identities=21% Similarity=0.453 Sum_probs=38.2
Q ss_pred HHHHHHHHHcCCeEEEeccCCCCCCcCCCCccCChHHHHHHHHHhCCC---------HHHHHHHHHhhcC--CEEEeCCC
Q 035739 213 RKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLENEALKEIAKARGKT---------VAQVSLRWIVEQG--ATVVIKSL 281 (335)
Q Consensus 213 ~~~l~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~g~s---------~~q~al~~~l~~~--~~vi~g~~ 281 (335)
.++.++|+++||.+++ +||.- +.+ ++.+++++. ..--.|+++.+.+ +..=.|++
T Consensus 59 ~~L~~~~~~~gi~f~s-tpfd~-------------~s~-d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~s 123 (241)
T PF03102_consen 59 KELFEYCKELGIDFFS-TPFDE-------------ESV-DFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMS 123 (241)
T ss_dssp HHHHHHHHHTT-EEEE-EE-SH-------------HHH-HHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT-
T ss_pred HHHHHHHHHcCCEEEE-CCCCH-------------HHH-HHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCCC
Confidence 6789999999999887 46643 222 222344321 1122566666665 55557999
Q ss_pred CHHHHHHhhccc
Q 035739 282 NLERMKQNLGIF 293 (335)
Q Consensus 282 ~~~~l~enl~a~ 293 (335)
+.+++++.++.+
T Consensus 124 tl~EI~~Av~~~ 135 (241)
T PF03102_consen 124 TLEEIERAVEVL 135 (241)
T ss_dssp -HHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999999887
No 148
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=35.74 E-value=1.9e+02 Score=22.57 Aligned_cols=65 Identities=17% Similarity=0.252 Sum_probs=46.5
Q ss_pred CCCceEEeeccCCCCCChhhHHHHHHHHHHHhCC---CccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 035739 93 SREQLFITSKLWCQNAHRDHVIPALKKSLSALQM---EYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEES 169 (335)
Q Consensus 93 ~R~~~~i~tK~~~~~~~~~~i~~~~e~sL~~Lg~---d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 169 (335)
+|=.+.|+-|++..-..+..+++.+.+.++.+.- ...|++++-.+... ..+..++.+.|..|
T Consensus 47 ~R~G~~VsKK~~~~AV~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~---------------~~~~~~l~~~l~~l 111 (122)
T PRK03031 47 TRFGISISQKVSKKAVVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAA---------------ECNYEQFLQELEQL 111 (122)
T ss_pred cEEEEEEecccccchhhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcc---------------cCCHHHHHHHHHHH
Confidence 4555677777665455678899999988887642 35799999988543 35577888888777
Q ss_pred HHc
Q 035739 170 QML 172 (335)
Q Consensus 170 ~~~ 172 (335)
.+.
T Consensus 112 l~k 114 (122)
T PRK03031 112 LIQ 114 (122)
T ss_pred HHH
Confidence 665
No 149
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=35.01 E-value=3.2e+02 Score=24.21 Aligned_cols=117 Identities=15% Similarity=0.205 Sum_probs=68.7
Q ss_pred HHHHHcCCccEEEecCcc---HHHHHHHHHhcC-----CC-CccccCCCCccccc-----HHHHHHHHHcCCeEEEeccC
Q 035739 167 EESQMLGLTKSIGLSNFS---RKKIETILTFAT-----IP-PSINQVEMHPVWQQ-----RKLIEFCKAKGIIVTAYSPL 232 (335)
Q Consensus 167 ~~l~~~Gkir~iGvs~~~---~~~l~~~~~~~~-----~~-~~~~q~~~~~~~~~-----~~~l~~~~~~gi~v~a~~pl 232 (335)
.+..+.|.--++++.-|+ +..++.++.... .. ..+-.+.+.....+ .+-+.+|++.+++++.+.|-
T Consensus 57 ~Ra~~~Gl~~~vavGvHPr~iP~e~~~~l~~L~~~l~~e~VvAiGEiGLe~~t~~E~evf~~QL~LA~e~dvPviVHTPr 136 (254)
T COG1099 57 ERAEKAGLKLKVAVGVHPRAIPPELEEVLEELEELLSNEDVVAIGEIGLEEATDEEKEVFREQLELARELDVPVIVHTPR 136 (254)
T ss_pred hhHHhhCceeeEEeccCCCCCCchHHHHHHHHHhhcccCCeeEeeecccccCCHHHHHHHHHHHHHHHHcCCcEEEeCCC
Confidence 345677888888888887 333444444322 11 13334444433322 34578999999999999988
Q ss_pred CCCCCcCCCCccCChHHHHHHHHHhCCCHHHHHH--------HHHhhcC----CEEEeCCCCHHHHHHhhc
Q 035739 233 GAVGKIYGSNQVLENEALKEIAKARGKTVAQVSL--------RWIVEQG----ATVVIKSLNLERMKQNLG 291 (335)
Q Consensus 233 ~~~G~l~~~~~~~~~~~l~~la~~~g~s~~q~al--------~~~l~~~----~~vi~g~~~~~~l~enl~ 291 (335)
.. ...--..+-+++...|..+.++.+ .|++..+ .++=||--++++..+.++
T Consensus 137 ~n--------K~e~t~~ildi~~~~~l~~~lvvIDH~N~etv~~vld~e~~vGlTvqPgKlt~~eAveIV~ 199 (254)
T COG1099 137 RN--------KKEATSKILDILIESGLKPSLVVIDHVNEETVDEVLDEEFYVGLTVQPGKLTVEEAVEIVR 199 (254)
T ss_pred Cc--------chhHHHHHHHHHHHcCCChhheehhcccHHHHHHHHhccceEEEEecCCcCCHHHHHHHHH
Confidence 64 111224566777777877766544 4566665 344455555555555443
No 150
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=34.93 E-value=3.8e+02 Score=24.92 Aligned_cols=77 Identities=17% Similarity=0.076 Sum_probs=51.4
Q ss_pred CCCceEEeeccCCCCCChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q 035739 93 SREQLFITSKLWCQNAHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQML 172 (335)
Q Consensus 93 ~R~~~~i~tK~~~~~~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~ 172 (335)
.++.+.++.|.....+ ...+.+.+++..+++|. ++.+ ..|.. .+.....+.++.+..+
T Consensus 22 ~~~~i~~v~k~~~~pf-~~~~~~Gi~~aa~~~G~---~v~~-~~~~~-----------------~d~~~q~~~i~~li~~ 79 (336)
T PRK15408 22 AAERIAFIPKLVGVGF-FTSGGNGAKEAGKELGV---DVTY-DGPTE-----------------PSVSGQVQLINNFVNQ 79 (336)
T ss_pred CCcEEEEEECCCCCHH-HHHHHHHHHHHHHHhCC---EEEE-ECCCC-----------------CCHHHHHHHHHHHHHc
Confidence 5778888888754333 46788899999999983 4443 33322 1245566888888876
Q ss_pred CCccEEEecCccHHHHHHHH
Q 035739 173 GLTKSIGLSNFSRKKIETIL 192 (335)
Q Consensus 173 Gkir~iGvs~~~~~~l~~~~ 192 (335)
| +..|-++..+...+...+
T Consensus 80 ~-vdgIiv~~~d~~al~~~l 98 (336)
T PRK15408 80 G-YNAIIVSAVSPDGLCPAL 98 (336)
T ss_pred C-CCEEEEecCCHHHHHHHH
Confidence 5 788888877755444443
No 151
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=34.32 E-value=59 Score=25.20 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=24.0
Q ss_pred ChHHHHHHHHHHHHcCCCEeeCCCCcC
Q 035739 47 DTDALKLVVLEAIKLGYRHFDTAAMYG 73 (335)
Q Consensus 47 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg 73 (335)
+.+...+....+++.|++.||.+..|+
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 567788899999999999999999995
No 152
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=34.17 E-value=3.5e+02 Score=24.36 Aligned_cols=155 Identities=17% Similarity=0.192 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHcCCCEeeCCCCcC---CHHH--HHHHHHHHHHcCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHH
Q 035739 49 DALKLVVLEAIKLGYRHFDTAAMYG---TEKA--LGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSA 123 (335)
Q Consensus 49 ~~~~~~l~~A~~~Gin~~DtA~~Yg---se~~--lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~~e~sL~~ 123 (335)
+...+.++..-+.|+.+|..++.=+ .+.. ++..|++. .|+ +-=.+++. .+.++..+...+... ..
T Consensus 15 ~~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~--~g~---~~i~Hlt~----r~~n~~~l~~~L~~~-~~ 84 (272)
T TIGR00676 15 ENLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKE--TGI---PTVPHLTC----IGATREEIREILREY-RE 84 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHh--cCC---CeeEEeee----cCCCHHHHHHHHHHH-HH
Confidence 5555666666688999999988766 1222 33334421 132 11122332 345566777777644 77
Q ss_pred hCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHc-CCccEEEecCccH---------HHHHHHHH
Q 035739 124 LQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQML-GLTKSIGLSNFSR---------KKIETILT 193 (335)
Q Consensus 124 Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-Gkir~iGvs~~~~---------~~l~~~~~ 193 (335)
+|++ +++.|-.- ....++ +..... +....+-++.+++. |. -.||+..++. .++..+.+
T Consensus 85 ~Gi~--nvL~l~GD-~~~~~~---~~~~~~-----f~~a~~Li~~i~~~~~~-f~ig~a~~Peghp~~~~~~~~~~~L~~ 152 (272)
T TIGR00676 85 LGIR--HILALRGD-PPKGEG---TPTPGG-----FNYASELVEFIRNEFGD-FDIGVAAYPEKHPEAPNLEEDIENLKR 152 (272)
T ss_pred CCCC--EEEEeCCC-CCCCCC---CCCCCC-----CCCHHHHHHHHHHhcCC-eeEEEEeCCCCCCCCCCHHHHHHHHHH
Confidence 7754 23434432 211111 111111 11233333444443 43 4788887542 23444544
Q ss_pred h--cCCCCccccCCCCcccccHHHHHHHHHcCCeE
Q 035739 194 F--ATIPPSINQVEMHPVWQQRKLIEFCKAKGIIV 226 (335)
Q Consensus 194 ~--~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~v 226 (335)
. ++-.+.+.|.-|..- .-.++++.|++.||.+
T Consensus 153 K~~aGA~f~iTQ~~fd~~-~~~~~~~~~~~~gi~~ 186 (272)
T TIGR00676 153 KVDAGADYAITQLFFDND-DYYRFVDRCRAAGIDV 186 (272)
T ss_pred HHHcCCCeEeeccccCHH-HHHHHHHHHHHcCCCC
Confidence 3 345566777666641 1156788899997754
No 153
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=34.00 E-value=1.5e+02 Score=29.82 Aligned_cols=45 Identities=22% Similarity=0.145 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHHHHcCCccEEEecCccHHHHHHHHHhcCCCCcc
Q 035739 157 MDYRGVWEAMEESQMLGLTKSIGLSNFSRKKIETILTFATIPPSI 201 (335)
Q Consensus 157 ~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~ 201 (335)
.+..++.+.+-+.+++.+|+.+|+-.+...++..+++..+++++.
T Consensus 410 id~~~I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g~~lv~ 454 (546)
T COG4626 410 IDYAEIVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAGIKVVG 454 (546)
T ss_pred cCHHHHHHHHHHHHHhCCccEEeecccchHHHHHHHHhCCCceee
Confidence 457889999999999999999999999999999999988876433
No 154
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=33.68 E-value=1.7e+02 Score=22.78 Aligned_cols=65 Identities=18% Similarity=0.209 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCccHHHHHHHHHhcCCCCccccCCCCcccccHHHHHHHHHcCCeEEEe
Q 035739 159 YRGVWEAMEESQMLGLTKSIGLSNFSRKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAY 229 (335)
Q Consensus 159 ~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~v~a~ 229 (335)
...++..|..+++.|++. .|. .+...+++......+++--..++.+....+..+|++++|+++-.
T Consensus 11 ~~ki~~lL~la~ragkl~-~G~-----~~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~ 75 (117)
T TIGR03677 11 ANKALEAVEKARETGKIK-KGT-----NEVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYV 75 (117)
T ss_pred HHHHHHHHHHHHHcCCEe-EcH-----HHHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEe
Confidence 356788888889999863 454 66777777776666777667766544577889999999996553
No 155
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=33.21 E-value=1.9e+02 Score=25.48 Aligned_cols=34 Identities=12% Similarity=0.144 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCccHHHHHHHHHh
Q 035739 159 YRGVWEAMEESQMLGLTKSIGLSNFSRKKIETILTF 194 (335)
Q Consensus 159 ~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~ 194 (335)
...+.+.+.+++.+|++ +=+|+|..++++++++.
T Consensus 169 ~r~~~dfi~q~k~egr~--viFSSH~m~EvealCDr 202 (245)
T COG4555 169 RRKFHDFIKQLKNEGRA--VIFSSHIMQEVEALCDR 202 (245)
T ss_pred HHHHHHHHHHhhcCCcE--EEEecccHHHHHHhhhe
Confidence 55678889999999985 88999999999888763
No 156
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=32.62 E-value=2.2e+02 Score=23.02 Aligned_cols=59 Identities=17% Similarity=0.073 Sum_probs=35.1
Q ss_pred CCccEEEecCccHHHH----HHHHHhcCCCCccccCCCCccccc----------HHHHHHHHHcCCeEEEecc
Q 035739 173 GLTKSIGLSNFSRKKI----ETILTFATIPPSINQVEMHPVWQQ----------RKLIEFCKAKGIIVTAYSP 231 (335)
Q Consensus 173 Gkir~iGvs~~~~~~l----~~~~~~~~~~~~~~q~~~~~~~~~----------~~~l~~~~~~gi~v~a~~p 231 (335)
-.+...|++..+...+ ...+...+.+.+++++--|-..+. ..+++.+++++..++..++
T Consensus 37 ~~v~n~g~~G~~~~~~~~~l~~~~~~~~pd~v~i~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vil~~~ 109 (177)
T cd01822 37 VTVINAGVSGDTTAGGLARLPALLAQHKPDLVILELGGNDGLRGIPPDQTRANLRQMIETAQARGAPVLLVGM 109 (177)
T ss_pred eEEEecCcCCcccHHHHHHHHHHHHhcCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 3456778887775443 333443344445565555533221 5678889888988877654
No 157
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=32.40 E-value=1.4e+02 Score=28.73 Aligned_cols=69 Identities=12% Similarity=0.047 Sum_probs=48.4
Q ss_pred HHHHHHHHHHcCCcc-EEEecCccHHHHHHHHHhcCCCCccccCCCCcc---cccHHHHHHHHHcCCeEEEeccC
Q 035739 162 VWEAMEESQMLGLTK-SIGLSNFSRKKIETILTFATIPPSINQVEMHPV---WQQRKLIEFCKAKGIIVTAYSPL 232 (335)
Q Consensus 162 ~~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~~l~~~~~~gi~v~a~~pl 232 (335)
-++.+.+|++...+. +.|-+-++..++.++++... ..++|...... ..-.++...|+++|+.++.++..
T Consensus 249 d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~a--vdil~~d~~~~GGit~~~kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 249 GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNA--VDIPLADHHFWGGMRGSVRVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCC--CcEEeeccccccCHHHHHHHHHHHHHcCCeEEEecCc
Confidence 357777788876666 66667777788888887554 34666655432 22368899999999999887654
No 158
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=32.40 E-value=43 Score=26.84 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.5
Q ss_pred HHHHHHHHHcCCeEEEeccCCC
Q 035739 213 RKLIEFCKAKGIIVTAYSPLGA 234 (335)
Q Consensus 213 ~~~l~~~~~~gi~v~a~~pl~~ 234 (335)
.++++.|++.||.|++|-.+.-
T Consensus 47 ge~v~a~h~~Girv~ay~~~~~ 68 (132)
T PF14871_consen 47 GEQVEACHERGIRVPAYFDFSW 68 (132)
T ss_pred HHHHHHHHHCCCEEEEEEeeec
Confidence 7899999999999999987753
No 159
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=32.21 E-value=2.2e+02 Score=22.65 Aligned_cols=67 Identities=15% Similarity=0.178 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCCCEeeCCCCcC-----------------CHHHHHHHHHHHHHcCCCCCCCceEEeeccCCCCCChhhHH
Q 035739 52 KLVVLEAIKLGYRHFDTAAMYG-----------------TEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVI 114 (335)
Q Consensus 52 ~~~l~~A~~~Gin~~DtA~~Yg-----------------se~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~ 114 (335)
...+..+++.|+|+||.--.++ .-+-+=+.+++.+.+. +.+-|++.-|-.......+.+.
T Consensus 31 ~~~i~~qL~~GvR~~dirv~~~~~~~~~v~Hg~~~~~~~~~~dvL~~i~~fl~~~---p~e~VIl~l~~~~~~~~~~~l~ 107 (135)
T smart00148 31 VEGYIQALDHGCRCVELDCWDGPDGEPVIYHGHTFTLPIKLSEVLEAIKDFAFVT---SPYPVILSLENHCSPDQQAKMA 107 (135)
T ss_pred HHHHHHHHHhCCCEEEEEcccCCCCCEEEEECCcccccEEHHHHHHHHHHHHHhC---CCCcEEEeehhhCCHHHHHHHH
Confidence 4578999999999997532221 1111112233333333 6777888888654221123344
Q ss_pred HHHHHHH
Q 035739 115 PALKKSL 121 (335)
Q Consensus 115 ~~~e~sL 121 (335)
+-+++.|
T Consensus 108 ~~l~~~~ 114 (135)
T smart00148 108 QMFKEIF 114 (135)
T ss_pred HHHHHHH
Confidence 4444444
No 160
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=32.04 E-value=2.6e+02 Score=22.79 Aligned_cols=65 Identities=14% Similarity=0.127 Sum_probs=45.0
Q ss_pred CCCceEEeeccCCCCCChhhHHHHHHHHHHHhC--CCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 035739 93 SREQLFITSKLWCQNAHRDHVIPALKKSLSALQ--MEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQ 170 (335)
Q Consensus 93 ~R~~~~i~tK~~~~~~~~~~i~~~~e~sL~~Lg--~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 170 (335)
.|=-+.|+-|++..-..+..+++.+.++++.+. +...|++++-.+... ..+..++.+.|..|.
T Consensus 48 ~RlG~sVSKKvg~~AV~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~---------------~~~~~~l~~~l~~LL 112 (145)
T PRK04820 48 PRLGLAVSRKVDTRAVGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAA---------------KASNPQLRDAFLRLL 112 (145)
T ss_pred cEEEEEEeccccCcchhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCcc---------------cCCHHHHHHHHHHHH
Confidence 465677777876545557888888888887653 334488888876432 355778888888877
Q ss_pred Hc
Q 035739 171 ML 172 (335)
Q Consensus 171 ~~ 172 (335)
+.
T Consensus 113 ~k 114 (145)
T PRK04820 113 RR 114 (145)
T ss_pred HH
Confidence 65
No 161
>PRK01492 rnpA ribonuclease P; Reviewed
Probab=31.91 E-value=2.5e+02 Score=21.93 Aligned_cols=62 Identities=5% Similarity=0.074 Sum_probs=45.0
Q ss_pred CCceEEeeccCCCCCChhhHHHHHHHHHHHhCCC------ccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 035739 94 REQLFITSKLWCQNAHRDHVIPALKKSLSALQME------YLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAME 167 (335)
Q Consensus 94 R~~~~i~tK~~~~~~~~~~i~~~~e~sL~~Lg~d------~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 167 (335)
|=.+.|+-|++..-..+..+++.+.++.+.+..+ -.|++++-.+... ..+..++.+.|+
T Consensus 47 RlG~sVSKKv~~kAV~RNRiKR~lRE~fR~~~~~~~l~~~g~DiVviaR~~~~---------------~~~~~~l~~~l~ 111 (118)
T PRK01492 47 FLGIKVSRKLNKKAVVRNKIKRRIRHLIRIIVSDSSFKAIKFAMIIIPRKGFE---------------EINFSHLNYELS 111 (118)
T ss_pred eEEEEEecccCCchhhHHHHHHHHHHHHHHhCcccccCCCCceEEEEECCCcc---------------cCCHHHHHHHHH
Confidence 6678889897655556788999999999887542 4789999987543 345667777776
Q ss_pred HHH
Q 035739 168 ESQ 170 (335)
Q Consensus 168 ~l~ 170 (335)
.|.
T Consensus 112 ~l~ 114 (118)
T PRK01492 112 KII 114 (118)
T ss_pred HHH
Confidence 653
No 162
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=31.82 E-value=1.6e+02 Score=23.24 Aligned_cols=64 Identities=17% Similarity=0.144 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHcCCccEEEecCccHHHHHHHHHhcCCCCccccCCCCcccccHHHHHHHHHcCCeEEEe
Q 035739 160 RGVWEAMEESQMLGLTKSIGLSNFSRKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAY 229 (335)
Q Consensus 160 ~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~v~a~ 229 (335)
..++..|..+++.|++. .|. .+...+++......+++--..++.+-...+..+|+++||+++-.
T Consensus 16 ~ki~~lL~la~ragklv-~G~-----~~v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~ 79 (122)
T PRK04175 16 EKALEAVEKARDTGKIK-KGT-----NETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYV 79 (122)
T ss_pred HHHHHHHHHHHHcCCEe-EcH-----HHHHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEE
Confidence 45788888889999874 444 66777777766666777666666544467889999999997543
No 163
>PRK12928 lipoyl synthase; Provisional
Probab=31.77 E-value=4.1e+02 Score=24.34 Aligned_cols=77 Identities=16% Similarity=0.160 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHHHcC---Ccc---EEEecCccHHHHHHHHHhcC-CCCccccC-CCCcccc-----------c--HHH
Q 035739 157 MDYRGVWEAMEESQMLG---LTK---SIGLSNFSRKKIETILTFAT-IPPSINQV-EMHPVWQ-----------Q--RKL 215 (335)
Q Consensus 157 ~~~~~~~~~L~~l~~~G---kir---~iGvs~~~~~~l~~~~~~~~-~~~~~~q~-~~~~~~~-----------~--~~~ 215 (335)
...++.++.++.+++.| .++ -+|+ .-+.+++.+.++... ..+..+.+ +|..-.. + ..+
T Consensus 185 ~t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~ 263 (290)
T PRK12928 185 ADYQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRDLRAVGCDRLTIGQYLRPSLAHLPVQRYWTPEEFEAL 263 (290)
T ss_pred CCHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCccCCceeeccCHHHHHHH
Confidence 34788899999999988 444 4577 555555555444322 33333332 3322111 0 456
Q ss_pred HHHHHHcCCeEEEeccCCC
Q 035739 216 IEFCKAKGIIVTAYSPLGA 234 (335)
Q Consensus 216 l~~~~~~gi~v~a~~pl~~ 234 (335)
-..+.+.|...++.+||-.
T Consensus 264 ~~~~~~~g~~~~~~~p~~r 282 (290)
T PRK12928 264 GQIARELGFSHVRSGPLVR 282 (290)
T ss_pred HHHHHHcCCceeEecCccc
Confidence 7778888888888888854
No 164
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=31.59 E-value=1.4e+02 Score=25.75 Aligned_cols=61 Identities=10% Similarity=0.098 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHcCCccEEEecCcc-HHHHHHHHHhcCCCCccccCCCCcccccHHHHHHHHHcCCeEEE
Q 035739 161 GVWEAMEESQMLGLTKSIGLSNFS-RKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTA 228 (335)
Q Consensus 161 ~~~~~L~~l~~~Gkir~iGvs~~~-~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~v~a 228 (335)
+..+.+++++++..=-.||..+.. .++++++++..- .+ -.+|. -..+++++|+++||.++.
T Consensus 41 ~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA-~F-----ivSP~-~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 41 AALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGS-RF-----IVSPG-TTQELLAAANDSDVPLLP 102 (201)
T ss_pred cHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCC-CE-----EECCC-CCHHHHHHHHHcCCCEeC
Confidence 345666666655332458888775 777877777432 22 22222 237899999999998886
No 165
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=31.53 E-value=4.2e+02 Score=24.46 Aligned_cols=180 Identities=12% Similarity=0.180 Sum_probs=96.4
Q ss_pred CChHHHHHHHHHHHHcC-CC--EeeCCCCcCCHHHHHHHHHHHHHcCCCCCCCceEEeecc---------CCCCCChhhH
Q 035739 46 SDTDALKLVVLEAIKLG-YR--HFDTAAMYGTEKALGEAIAEALRLGLVSSREQLFITSKL---------WCQNAHRDHV 113 (335)
Q Consensus 46 ~~~~~~~~~l~~A~~~G-in--~~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~~~i~tK~---------~~~~~~~~~i 113 (335)
.+.+...++++...+.+ +. .+.|-+.+-.++.|.. +++. |. +-.|.|..-. -.+.++.+.+
T Consensus 85 ~~~~~~~~i~~~l~~~~~~~~i~~esrpd~i~~e~L~~-l~~a---G~---~~~v~iG~ES~~d~~L~~~inKg~t~~~~ 157 (313)
T TIGR01210 85 VPKETRNYIFEKIAQRDNLKEVVVESRPEFIDEEKLEE-LRKI---GV---NVEVAVGLETANDRIREKSINKGSTFEDF 157 (313)
T ss_pred CCHHHHHHHHHHHHhcCCcceEEEEeCCCcCCHHHHHH-HHHc---CC---CEEEEEecCcCCHHHHHHhhCCCCCHHHH
Confidence 34566667777776666 32 3344444445666554 5543 42 2245553322 2234567777
Q ss_pred HHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCccHH---HHHH
Q 035739 114 IPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSRK---KIET 190 (335)
Q Consensus 114 ~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~---~l~~ 190 (335)
.++++. +++.|.. +-.++|-.+....+ ....+++.+.++.+.+-+ .++.+....+. .+.+
T Consensus 158 ~~ai~~-~~~~Gi~-v~~~~i~G~P~~se-------------~ea~ed~~~ti~~~~~l~--~~vs~~~l~v~~gT~l~~ 220 (313)
T TIGR01210 158 IRAAEL-ARKYGAG-VKAYLLFKPPFLSE-------------KEAIADMISSIRKCIPVT--DTVSINPTNVQKGTLVEF 220 (313)
T ss_pred HHHHHH-HHHcCCc-EEEEEEecCCCCCh-------------hhhHHHHHHHHHHHHhcC--CcEEEECCEEeCCCHHHH
Confidence 777775 4566875 66666655422111 112455666677777665 67887777633 4555
Q ss_pred HHHhcCCCCccccCCCCcccccHHHHHHHHHcCCeEEEeccCCCCCCcCCCCccC-ChHHHHHHHHHhC
Q 035739 191 ILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVL-ENEALKEIAKARG 258 (335)
Q Consensus 191 ~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~~G~l~~~~~~~-~~~~l~~la~~~g 258 (335)
+.+...+.|- -++...+++..+++.++.|+. -|.+. |...|+.+-. -+..+.+.-++++
T Consensus 221 ~~~~G~~~pp-------~lws~~e~l~e~~~~~~~~~~-d~~g~-~~~rg~~nc~~c~~~~~~~~~~~~ 280 (313)
T TIGR01210 221 LWNRGLYRPP-------WLWSVAEVLKEAKKIGAEVLS-DPVGA-GSDRGAHNCGKCDKRVKEAIRKFS 280 (313)
T ss_pred HHHcCCCCCC-------CHHHHHHHHHHHHhhCCeEEe-cCCCC-CCcCCCcCcchhhHHHHHHHHHhc
Confidence 5554433221 113346788888888875554 57766 6555544321 2334444444443
No 166
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=31.42 E-value=84 Score=28.41 Aligned_cols=58 Identities=24% Similarity=0.393 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCccH-----HHHHHHHHhcCCCCccccCCCCcccccHHHHHHHHHcCCeEEEe
Q 035739 159 YRGVWEAMEESQMLGLTKSIGLSNFSR-----KKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAY 229 (335)
Q Consensus 159 ~~~~~~~L~~l~~~Gkir~iGvs~~~~-----~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~v~a~ 229 (335)
+...-..|++|++.|- -||.||+. .++.+.++..+.. +.++-+++..|++.|+-.++|
T Consensus 94 ~~~~~~fl~~lk~~Gf---~GV~NfPTvgliDG~fR~~LEe~Gmg----------y~~EVemi~~A~~~gl~T~~y 156 (268)
T PF09370_consen 94 FRDMDRFLDELKELGF---SGVQNFPTVGLIDGQFRQNLEETGMG----------YDREVEMIRKAHEKGLFTTAY 156 (268)
T ss_dssp T--HHHHHHHHHHHT----SEEEE-S-GGG--HHHHHHHHHTT------------HHHHHHHHHHHHHTT-EE--E
T ss_pred CCcHHHHHHHHHHhCC---ceEEECCcceeeccHHHHHHHhcCCC----------HHHHHHHHHHHHHCCCeeeee
Confidence 4566778889998886 79999972 3456666665532 233456788888888877776
No 167
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=31.15 E-value=3.4e+02 Score=23.30 Aligned_cols=126 Identities=15% Similarity=0.115 Sum_probs=68.5
Q ss_pred ChHHHHHHHHHHHHcCCCEeeCC----------CCcC-----CHHHHHHHHHHHHHcCCCCCCCceEEeeccCCCCCChh
Q 035739 47 DTDALKLVVLEAIKLGYRHFDTA----------AMYG-----TEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRD 111 (335)
Q Consensus 47 ~~~~~~~~l~~A~~~Gin~~DtA----------~~Yg-----se~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~ 111 (335)
+.++..+..+.+.++|+..+|-- +.|| ..+.+-+.++... +.+ . +-|+.|+.......+
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~-~~~--~---~~v~vk~r~~~~~~~ 138 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVR-EAV--P---IPVTVKIRLGWDDEE 138 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHH-Hhc--C---CCEEEEEeeccCCch
Confidence 56788888889999999988752 4576 3444555555431 111 1 456666632111111
Q ss_pred hHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCc-cHHHHHH
Q 035739 112 HVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNF-SRKKIET 190 (335)
Q Consensus 112 ~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~-~~~~l~~ 190 (335)
... .+-+.|..+|+ |.+.+|....... .. ....|+.+.++++.-.+.-++..+. +.+++.+
T Consensus 139 ~~~-~~~~~l~~~Gv---d~i~v~~~~~~~~-----------~~---~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~ 200 (231)
T cd02801 139 ETL-ELAKALEDAGA---SALTVHGRTREQR-----------YS---GPADWDYIAEIKEAVSIPVIANGDIFSLEDALR 200 (231)
T ss_pred HHH-HHHHHHHHhCC---CEEEECCCCHHHc-----------CC---CCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHH
Confidence 222 22234555675 5566775422100 00 0113566667777767777777666 4677777
Q ss_pred HHHhcC
Q 035739 191 ILTFAT 196 (335)
Q Consensus 191 ~~~~~~ 196 (335)
+++..+
T Consensus 201 ~l~~~g 206 (231)
T cd02801 201 CLEQTG 206 (231)
T ss_pred HHHhcC
Confidence 776543
No 168
>PLN02681 proline dehydrogenase
Probab=30.99 E-value=5.3e+02 Score=25.41 Aligned_cols=172 Identities=17% Similarity=0.105 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHcCCC-EeeCCCCcCC---HHHHHHHHHHHHHcCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHH--
Q 035739 50 ALKLVVLEAIKLGYR-HFDTAAMYGT---EKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSA-- 123 (335)
Q Consensus 50 ~~~~~l~~A~~~Gin-~~DtA~~Ygs---e~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~~e~sL~~-- 123 (335)
.+.++++.|.+.|++ +||.=+.|-. ..+.-+..++. +--..+.-|+++--...+ .+.+.+...++.+.+.
T Consensus 221 rl~~i~~~A~~~gv~l~IDAE~s~~q~aid~l~~~l~~~y---N~~~~~~~V~~T~QaYLk-~t~~~l~~~l~~a~~~g~ 296 (455)
T PLN02681 221 RLQKLCERAAQLGVPLLIDAEYTSLQPAIDYITYDLAREF---NKGKDRPIVYGTYQAYLK-DARERLRLDLERSEREGV 296 (455)
T ss_pred HHHHHHHHHHHCCCEEEEeCCcccchhHHHHHHHHHHHHh---ccccCCCcEEEEEeCccc-cCHHHHHHHHHHHHhcCC
Confidence 466788999999998 6787665431 22222222322 100003446666665543 3466777777666442
Q ss_pred -hCC-----Cccce-----EEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCccHHHHHHHH
Q 035739 124 -LQM-----EYLDL-----YLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSRKKIETIL 192 (335)
Q Consensus 124 -Lg~-----d~iDl-----~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~ 192 (335)
+|+ -|+|- -.+.||++..+ ++ ...+..+....+.|-+-...|.+ ++.|.+|+...+..++
T Consensus 297 ~~gvKLVRGAY~e~E~~~a~~~g~~~pi~~-------~k-~~Td~~Y~~~~~~lL~~~~~~~~-~~~vATHN~~Si~~a~ 367 (455)
T PLN02681 297 PLGAKLVRGAYLSLERRLAASLGVPSPVHD-------TI-QDTHACYNRCAEFLLEKASNGDG-EVMLATHNVESGELAA 367 (455)
T ss_pred CcceEEEecCCcchhhhhHHhcCCCCCCcC-------CH-HHHHHHHHHHHHHHhhhhccCCe-eeEEecCCHHHHHHHH
Confidence 222 12211 01112211111 00 00011122333333322223544 8999999988776665
Q ss_pred Hh---cCCCCccccCCCCcccc-cHHHHHHHHHcCCeEEEeccCCC
Q 035739 193 TF---ATIPPSINQVEMHPVWQ-QRKLIEFCKAKGIIVTAYSPLGA 234 (335)
Q Consensus 193 ~~---~~~~~~~~q~~~~~~~~-~~~~l~~~~~~gi~v~a~~pl~~ 234 (335)
+. .++++.-..+.|.-+.. ..++.....+.|..|.-|-|+|.
T Consensus 368 ~~~~~~gi~~~~~~veF~qL~GM~d~ls~~L~~~G~~V~kYvPyG~ 413 (455)
T PLN02681 368 AKMNELGLHKGDPRVQFAQLLGMSDNLSFGLGNAGFRVSKYLPYGP 413 (455)
T ss_pred HHHHHcCCCCCCCCEEEeccCCCCHHHHHHHHhcCCCEEEEeeccC
Confidence 54 33433222222222222 24555556677999999999974
No 169
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=30.95 E-value=5.1e+02 Score=25.27 Aligned_cols=122 Identities=16% Similarity=0.164 Sum_probs=63.2
Q ss_pred HHHHHHHHcCCCEeeCCCCcC------------CHHHHHHHHHHHHHcCCCCCCCceEEeeccCCCCCChhhHHHHHHHH
Q 035739 53 LVVLEAIKLGYRHFDTAAMYG------------TEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKS 120 (335)
Q Consensus 53 ~~l~~A~~~Gin~~DtA~~Yg------------se~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~~e~s 120 (335)
+.++..-+.|+|.+.-+-.-. +.+.+-++++...+.|+ . .+-+.-=++.+..+.+.+.+.++..
T Consensus 153 e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~--~--~v~~dli~GlPgqt~e~~~~tl~~~ 228 (453)
T PRK13347 153 EMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGF--E--SINFDLIYGLPHQTVESFRETLDKV 228 (453)
T ss_pred HHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCC--C--cEEEeEEEeCCCCCHHHHHHHHHHH
Confidence 455555566887774432211 33333455554433343 2 1222222244556678888877766
Q ss_pred HHHhCCCccceEEe-ecCCCCCCCCCCCCCCCCCCCCCCHHH----HHHHHHHHHHcCCccEEEecCccH
Q 035739 121 LSALQMEYLDLYLV-HWPISSKPGELGFPEPKEDLLPMDYRG----VWEAMEESQMLGLTKSIGLSNFSR 185 (335)
Q Consensus 121 L~~Lg~d~iDl~~l-H~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~L~~l~~~Gkir~iGvs~~~~ 185 (335)
+ +|+.++|.+|.+ |.|........ . +.....+.++ ...+.+.|.+.|.. .+|+++|.-
T Consensus 229 ~-~l~p~~i~~y~l~~~p~~~~~~~~----~-~~~~lp~~~~~~~~~~~~~~~L~~~Gy~-~~~~~~far 291 (453)
T PRK13347 229 I-ALSPDRIAVFGYAHVPSRRKNQRL----I-DEAALPDAEERLRQARAVADRLLAAGYV-PIGLDHFAL 291 (453)
T ss_pred H-hcCCCEEEEeccccccchhhHHhc----C-CccCCcCHHHHHHHHHHHHHHHHHCCCE-EEeccceeC
Confidence 6 689999998866 33321110000 0 0000111222 33456778888985 599999984
No 170
>PRK06256 biotin synthase; Validated
Probab=30.82 E-value=3.8e+02 Score=24.78 Aligned_cols=123 Identities=13% Similarity=0.028 Sum_probs=65.6
Q ss_pred CCCHHHHHHHHHHHHHcCCccEEE-ecCc--cH---HHHHHHHHhcCCCCccccCCCCcccccHHHHHHHHHcCCeEEEe
Q 035739 156 PMDYRGVWEAMEESQMLGLTKSIG-LSNF--SR---KKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAY 229 (335)
Q Consensus 156 ~~~~~~~~~~L~~l~~~Gkir~iG-vs~~--~~---~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~v~a~ 229 (335)
..+.+++.+.++.+++.|..+..= .+.+ .. +.+.++++...-.+.+ .+..+......+.+...++.|+..+..
T Consensus 90 ~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i-~~~~~~g~l~~e~l~~LkeaG~~~v~~ 168 (336)
T PRK06256 90 WLDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDL-EICACLGLLTEEQAERLKEAGVDRYNH 168 (336)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCCC-cEEecCCcCCHHHHHHHHHhCCCEEec
Confidence 456899999999999998654321 1232 22 2444454433211111 112222234578889999999876544
Q ss_pred ccCCCCCCcCCCCccCChHHHHHHHHHhCCCHH--HHHHHHHhhcC----CEEEeCCC-CHHHHHHhhccc
Q 035739 230 SPLGAVGKIYGSNQVLENEALKEIAKARGKTVA--QVSLRWIVEQG----ATVVIKSL-NLERMKQNLGIF 293 (335)
Q Consensus 230 ~pl~~~G~l~~~~~~~~~~~l~~la~~~g~s~~--q~al~~~l~~~----~~vi~g~~-~~~~l~enl~a~ 293 (335)
+ +- . ..+.++.++..+ +.. --+++.+...| +..|+|.. +.+++.+.+..+
T Consensus 169 ~-lE----------t-s~~~~~~i~~~~--t~~~~i~~i~~a~~~Gi~v~~~~I~GlgEt~ed~~~~~~~l 225 (336)
T PRK06256 169 N-LE----------T-SRSYFPNVVTTH--TYEDRIDTCEMVKAAGIEPCSGGIIGMGESLEDRVEHAFFL 225 (336)
T ss_pred C-Cc----------c-CHHHHhhcCCCC--CHHHHHHHHHHHHHcCCeeccCeEEeCCCCHHHHHHHHHHH
Confidence 2 11 1 223444444322 322 22555555555 45677763 567776666543
No 171
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=30.78 E-value=4.1e+02 Score=24.08 Aligned_cols=106 Identities=19% Similarity=0.176 Sum_probs=56.2
Q ss_pred CCChHHHHHHHHHHHHcCCCEeeCCCCcCCHHH----HHHHHHHHHHcCCCCCCCceEEeeccCCCCCChhhHHHHHHHH
Q 035739 45 KSDTDALKLVVLEAIKLGYRHFDTAAMYGTEKA----LGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKS 120 (335)
Q Consensus 45 ~~~~~~~~~~l~~A~~~Gin~~DtA~~Ygse~~----lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~~e~s 120 (335)
..+.+++.++++.+.+.|+..|.- .|-|.. +-+.++..-..| -.++.|+|... .+ ...-..
T Consensus 39 ~ls~eei~~~i~~~~~~gi~~I~~---tGGEPll~~~l~~iv~~l~~~g----~~~v~i~TNG~-------ll-~~~~~~ 103 (302)
T TIGR02668 39 ELSPEEIERIVRVASEFGVRKVKI---TGGEPLLRKDLIEIIRRIKDYG----IKDVSMTTNGI-------LL-EKLAKK 103 (302)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEE---ECcccccccCHHHHHHHHHhCC----CceEEEEcCch-------HH-HHHHHH
Confidence 457888999999998999987763 342222 223333321112 13566776531 12 223344
Q ss_pred HHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 035739 121 LSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGL 174 (335)
Q Consensus 121 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk 174 (335)
|.+.|++.+- +-++.+++.. +.... .....+.+++.++.+++.|.
T Consensus 104 l~~~g~~~v~-iSld~~~~~~-----~~~i~---~~~~~~~vl~~i~~~~~~G~ 148 (302)
T TIGR02668 104 LKEAGLDRVN-VSLDTLDPEK-----YKKIT---GRGALDRVIEGIESAVDAGL 148 (302)
T ss_pred HHHCCCCEEE-EEecCCCHHH-----hhhcc---CCCcHHHHHHHHHHHHHcCC
Confidence 6666765543 2334432211 00000 02347888999999988874
No 172
>TIGR03586 PseI pseudaminic acid synthase.
Probab=30.77 E-value=4.5e+02 Score=24.59 Aligned_cols=111 Identities=15% Similarity=0.131 Sum_probs=64.2
Q ss_pred CChHHHHHHHHHHHHcCCCEeeCCCCc---------C------------CHHHHHHHHHHHHHcCCCCCCCceEEeeccC
Q 035739 46 SDTDALKLVVLEAIKLGYRHFDTAAMY---------G------------TEKALGEAIAEALRLGLVSSREQLFITSKLW 104 (335)
Q Consensus 46 ~~~~~~~~~l~~A~~~Gin~~DtA~~Y---------g------------se~~lG~~l~~~~~~g~~~~R~~~~i~tK~~ 104 (335)
.+.++..++.+.+-+.|+.++=|.-.- + +-.+|- .+.. ....|+|+|=.
T Consensus 74 l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KI~S~~~~n~~LL~-~va~--------~gkPvilstG~- 143 (327)
T TIGR03586 74 TPWEWHKELFERAKELGLTIFSSPFDETAVDFLESLDVPAYKIASFEITDLPLIR-YVAK--------TGKPIIMSTGI- 143 (327)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEccCCHHHHHHHHHcCCCEEEECCccccCHHHHH-HHHh--------cCCcEEEECCC-
Confidence 456777888899999999998554322 1 122221 1111 23445555543
Q ss_pred CCCCChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCcc
Q 035739 105 CQNAHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFS 184 (335)
Q Consensus 105 ~~~~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~ 184 (335)
.+.+.+..+++...+ -| .-++.++|+...+. .+.+ .--+.+|..|++.-. .-||+|.|+
T Consensus 144 ---~t~~Ei~~Av~~i~~-~g--~~~i~LlhC~s~YP-------~~~~-------~~nL~~i~~lk~~f~-~pVG~SDHt 202 (327)
T TIGR03586 144 ---ATLEEIQEAVEACRE-AG--CKDLVLLKCTSSYP-------APLE-------DANLRTIPDLAERFN-VPVGLSDHT 202 (327)
T ss_pred ---CCHHHHHHHHHHHHH-CC--CCcEEEEecCCCCC-------CCcc-------cCCHHHHHHHHHHhC-CCEEeeCCC
Confidence 246788888877653 33 24799999865431 1111 112455556655433 369999998
Q ss_pred HHH
Q 035739 185 RKK 187 (335)
Q Consensus 185 ~~~ 187 (335)
...
T Consensus 203 ~G~ 205 (327)
T TIGR03586 203 LGI 205 (327)
T ss_pred Cch
Confidence 654
No 173
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=30.64 E-value=61 Score=27.12 Aligned_cols=65 Identities=20% Similarity=0.247 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHcC-CccEEEecCcc--HHHHHHHHHhcCCCCccccCCCCcccccHHHHHHHHHcCCeEEE
Q 035739 159 YRGVWEAMEESQMLG-LTKSIGLSNFS--RKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTA 228 (335)
Q Consensus 159 ~~~~~~~L~~l~~~G-kir~iGvs~~~--~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~v~a 228 (335)
..+++.+|.++++.| +|-.+|..+.. ...+.+++ ++ .+.+..|+-...-...+..+++.|+.++.
T Consensus 63 ~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll---~~--~i~~~~~~~~~e~~~~i~~~~~~G~~viV 130 (176)
T PF06506_consen 63 GFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELL---GV--DIKIYPYDSEEEIEAAIKQAKAEGVDVIV 130 (176)
T ss_dssp HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHH---T---EEEEEEESSHHHHHHHHHHHHHTT--EEE
T ss_pred HhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHh---CC--ceEEEEECCHHHHHHHHHHHHHcCCcEEE
Confidence 667889999888765 55556665554 23444443 33 34444444322226678899999998888
No 174
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=30.60 E-value=2.5e+02 Score=21.58 Aligned_cols=64 Identities=14% Similarity=0.229 Sum_probs=45.6
Q ss_pred CCCceEEeeccCCCCCChhhHHHHHHHHHHHhCC---CccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 035739 93 SREQLFITSKLWCQNAHRDHVIPALKKSLSALQM---EYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEES 169 (335)
Q Consensus 93 ~R~~~~i~tK~~~~~~~~~~i~~~~e~sL~~Lg~---d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 169 (335)
+|=.+.|+-|++. -..+..+++.+.+.++.+.. ...|++++-.+... ..+..++.+.|..|
T Consensus 38 ~R~GisVsKKvgk-AV~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~---------------~~~~~~l~~~l~~l 101 (114)
T PRK00499 38 FRVGISVSKKVGN-AVVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAA---------------ELDYKEIKKSLIHV 101 (114)
T ss_pred cEEEEEEecccCc-hhhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCcc---------------cCCHHHHHHHHHHH
Confidence 5666788888765 55678899888888876642 35799999987542 34577777777777
Q ss_pred HHc
Q 035739 170 QML 172 (335)
Q Consensus 170 ~~~ 172 (335)
.+.
T Consensus 102 l~k 104 (114)
T PRK00499 102 LKL 104 (114)
T ss_pred HHH
Confidence 654
No 175
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=30.53 E-value=2.5e+02 Score=26.99 Aligned_cols=69 Identities=13% Similarity=0.067 Sum_probs=50.1
Q ss_pred HHHHHHHHHHcCCcc-EEEecCccHHHHHHHHHhcCCCCccccCCCCcc---cccHHHHHHHHHcCCeEEEeccC
Q 035739 162 VWEAMEESQMLGLTK-SIGLSNFSRKKIETILTFATIPPSINQVEMHPV---WQQRKLIEFCKAKGIIVTAYSPL 232 (335)
Q Consensus 162 ~~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~~l~~~~~~gi~v~a~~pl 232 (335)
-++.+.+|++.-.+. ..|=|.++...+.++++...+ .++|....-. ..-.++..+|+.+|+.++.++..
T Consensus 245 d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~--dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~~ 317 (404)
T PRK15072 245 NQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLI--DYIRTTVTHAGGITHLRRIADFAALYQVRTGSHGPT 317 (404)
T ss_pred CHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCC--CEEecCccccCcHHHHHHHHHHHHHcCCceeeccCc
Confidence 357778888876666 677778889999999886543 4666554432 22368899999999999886543
No 176
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=30.49 E-value=57 Score=18.94 Aligned_cols=16 Identities=19% Similarity=0.204 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHcCCC
Q 035739 49 DALKLVVLEAIKLGYR 64 (335)
Q Consensus 49 ~~~~~~l~~A~~~Gin 64 (335)
++...++..|.+.|++
T Consensus 3 ~EW~~Li~eA~~~Gls 18 (30)
T PF08671_consen 3 EEWVELIKEAKESGLS 18 (30)
T ss_dssp HHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHcCCC
Confidence 5678899999999986
No 177
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=30.18 E-value=3.6e+02 Score=25.50 Aligned_cols=93 Identities=19% Similarity=0.357 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC-ccEEEecCccHHHHHHH
Q 035739 113 VIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGL-TKSIGLSNFSRKKIETI 191 (335)
Q Consensus 113 i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk-ir~iGvs~~~~~~l~~~ 191 (335)
-+..+-+.|.++|+++|.+- +|.. .++-++.+..+.+.+. .+-.+++......++.+
T Consensus 23 ~k~~ia~~L~~~Gv~~IEvG---~p~~-------------------~~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a 80 (363)
T TIGR02090 23 QKVEIARKLDELGVDVIEAG---FPIA-------------------SEGEFEAIKKISQEGLNAEICSLARALKKDIDKA 80 (363)
T ss_pred HHHHHHHHHHHcCCCEEEEe---CCCC-------------------ChHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHH
Confidence 34556666999999998874 3321 1233566666665544 55566677778888888
Q ss_pred HHhcCCCCccccCCCCcccc--------------cHHHHHHHHHcCCeEEE
Q 035739 192 LTFATIPPSINQVEMHPVWQ--------------QRKLIEFCKAKGIIVTA 228 (335)
Q Consensus 192 ~~~~~~~~~~~q~~~~~~~~--------------~~~~l~~~~~~gi~v~a 228 (335)
.+. +.+...+-++.|.... -.+.+.+|+++|..+..
T Consensus 81 ~~~-g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~ 130 (363)
T TIGR02090 81 IDC-GVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEF 130 (363)
T ss_pred HHc-CcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 774 3332222223332211 14578899999987643
No 178
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=30.16 E-value=4.8e+02 Score=24.69 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=12.8
Q ss_pred EEEecCccHHHHHHHHHhcC
Q 035739 177 SIGLSNFSRKKIETILTFAT 196 (335)
Q Consensus 177 ~iGvs~~~~~~l~~~~~~~~ 196 (335)
-+++..++++.++++++...
T Consensus 295 v~~~G~~~~~~ae~~i~~G~ 314 (362)
T PRK10605 295 IIGAGAYTAEKAETLIGKGL 314 (362)
T ss_pred EEEeCCCCHHHHHHHHHcCC
Confidence 44555567777777777554
No 179
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=30.12 E-value=4.5e+02 Score=24.31 Aligned_cols=150 Identities=13% Similarity=0.108 Sum_probs=88.8
Q ss_pred ChHHHHHHHHHHHHcCCCEeeCCCCcCCHHHHHHHHHHHHHcCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHHhCC
Q 035739 47 DTDALKLVVLEAIKLGYRHFDTAAMYGTEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSALQM 126 (335)
Q Consensus 47 ~~~~~~~~l~~A~~~Gin~~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~~e~sL~~Lg~ 126 (335)
+.++..+.+++..+.|++.|=.--.=..+...=+++++. - .++-|..=.. ...+.+.. . .++.|.
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~KiKv~~~~d~~~v~~vr~~-------~-~~~~l~vDaN-~~~~~~~a----~-~~~~l~- 196 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIKLKITPQIMHQLVKLRRLR-------F-PQIPLVIDAN-ESYDLQDF----P-RLKELD- 196 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEeCCchhHHHHHHHHHh-------C-CCCcEEEECC-CCCCHHHH----H-HHHHHh-
Confidence 446667777888899999873211001122222445543 2 2333333332 22333332 1 234443
Q ss_pred CccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcc-EEEecCccHHHHHHHHHhcCCCCccccCC
Q 035739 127 EYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTK-SIGLSNFSRKKIETILTFATIPPSINQVE 205 (335)
Q Consensus 127 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~ 205 (335)
..++.++-.|.. .+-++.+.++++.-.+. +.|=|.++...+..+++.... .++|..
T Consensus 197 -~~~~~~iEeP~~--------------------~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~--dvi~~d 253 (324)
T TIGR01928 197 -RYQLLYIEEPFK--------------------IDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNV--KVINIK 253 (324)
T ss_pred -hCCCcEEECCCC--------------------hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCC--CEEEeC
Confidence 346677777632 24457788888876665 778888889999988886543 456655
Q ss_pred CCcc---cccHHHHHHHHHcCCeEEEeccCCC
Q 035739 206 MHPV---WQQRKLIEFCKAKGIIVTAYSPLGA 234 (335)
Q Consensus 206 ~~~~---~~~~~~l~~~~~~gi~v~a~~pl~~ 234 (335)
..-+ ..-.++...|+++|+.++..+.+.+
T Consensus 254 ~~~~GGit~~~~~~~~A~~~gi~~~~~~~~es 285 (324)
T TIGR01928 254 PGRLGGLTEVQKAIETCREHGAKVWIGGMLET 285 (324)
T ss_pred cchhcCHHHHHHHHHHHHHcCCeEEEcceEcc
Confidence 4432 2236889999999999998655543
No 180
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=30.10 E-value=1.8e+02 Score=22.44 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=14.5
Q ss_pred ccHHHHHHHHHcCCeEEEeccC
Q 035739 211 QQRKLIEFCKAKGIIVTAYSPL 232 (335)
Q Consensus 211 ~~~~~l~~~~~~gi~v~a~~pl 232 (335)
.+.+++++|+++|+.++.-..+
T Consensus 90 ~~~~~~~~a~~~gi~vigp~C~ 111 (116)
T PF13380_consen 90 ESEELIEAAREAGIRVIGPNCL 111 (116)
T ss_dssp --HHHHHHHHHTT-EEEESS-H
T ss_pred HHHHHHHHHHHcCCEEEeCCcc
Confidence 3478899999999998864433
No 181
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=29.71 E-value=3.5e+02 Score=26.13 Aligned_cols=114 Identities=14% Similarity=0.117 Sum_probs=61.3
Q ss_pred CCcCCHHHHHHHHHHHHHcCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHHhC-CCccceEEeecCCCCCCCCCCCC
Q 035739 70 AMYGTEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSALQ-MEYLDLYLVHWPISSKPGELGFP 148 (335)
Q Consensus 70 ~~Ygse~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~~e~sL~~Lg-~d~iDl~~lH~p~~~~~~~~~~~ 148 (335)
-.||.++.|-++|++..+. + +.+-++|.|=+.+.-. -+.+..-+++.-++.. ...+.++.+|.|.....
T Consensus 61 ~VfGg~~~L~~~i~~~~~~-~--~p~~I~V~ttc~~eiI-GdDi~~v~~~~~~~~p~~~~~~vi~v~t~gf~g~------ 130 (417)
T cd01966 61 TILGGGENLEEALDTLAER-A--KPKVIGLLSTGLTETR-GEDIAGALKQFRAEHPELADVPVVYVSTPDFEGS------ 130 (417)
T ss_pred EEECCHHHHHHHHHHHHHh-c--CCCEEEEECCCccccc-ccCHHHHHHHHHhhccccCCCeEEEecCCCCCCc------
Confidence 3688888888898886543 2 4555777776644322 1233333333222311 01467888998865421
Q ss_pred CCCCCCCCCCHHHHHHHHHH-H--------HHcCCccEEEecCcc---HHHHHHHHHhcCCCC
Q 035739 149 EPKEDLLPMDYRGVWEAMEE-S--------QMLGLTKSIGLSNFS---RKKIETILTFATIPP 199 (335)
Q Consensus 149 ~~~~~~~~~~~~~~~~~L~~-l--------~~~Gkir~iGvs~~~---~~~l~~~~~~~~~~~ 199 (335)
+ ......++++|-+ + ++.++|--||-++.+ .+.+.++++..++.+
T Consensus 131 -----~-~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl~v 187 (417)
T cd01966 131 -----L-EDGWAAAVEAIIEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLEP 187 (417)
T ss_pred -----H-HHHHHHHHHHHHHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 0 1113333333332 2 234668888755443 455777777777654
No 182
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=29.38 E-value=2.5e+02 Score=27.35 Aligned_cols=72 Identities=11% Similarity=0.140 Sum_probs=41.1
Q ss_pred HHHHHHHHHHcC-CccEEEecCccHHHHHHHHHhcCC-----CCccccCCCCcccccHHHHHHHHHcCCeEEEeccCC
Q 035739 162 VWEAMEESQMLG-LTKSIGLSNFSRKKIETILTFATI-----PPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPLG 233 (335)
Q Consensus 162 ~~~~L~~l~~~G-kir~iGvs~~~~~~l~~~~~~~~~-----~~~~~q~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~ 233 (335)
+...++.++++| .++++.|.+-....++.+.+.... .+..+-.....+.+-+++...|++.||.|++-.+-+
T Consensus 144 v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQa 221 (428)
T KOG1549|consen 144 VLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQA 221 (428)
T ss_pred hhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCccccccHHHHHHHhCcCCcEEEeehhhh
Confidence 455666677777 356777775554445554443321 122222233333334788889999999777654443
No 183
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.38 E-value=4.9e+02 Score=24.53 Aligned_cols=149 Identities=11% Similarity=0.141 Sum_probs=81.7
Q ss_pred CHHHHHHHHHHHHHc-CCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHHhC-CCccceEEeecCCCCCCCCCCCCCCC
Q 035739 74 TEKALGEAIAEALRL-GLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSALQ-MEYLDLYLVHWPISSKPGELGFPEPK 151 (335)
Q Consensus 74 se~~lG~~l~~~~~~-g~~~~R~~~~i~tK~~~~~~~~~~i~~~~e~sL~~Lg-~d~iDl~~lH~p~~~~~~~~~~~~~~ 151 (335)
+-..+-++++..-.. |+ ....+.|+|= +. ...+.+-.+.-+.+|| .+....+-||.+++..-.... +.+
T Consensus 163 n~~~v~~~i~~l~~~~~i--~~r~itvST~-G~----~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~--p~~ 233 (345)
T PRK14457 163 NIDEVLAAIRCLNQDLGI--GQRRITVSTV-GV----PKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLI--PSA 233 (345)
T ss_pred CHHHHHHHHHHHhcccCC--ccCceEEECC-Cc----hhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhc--CCc
Confidence 445566676654221 44 4456777772 21 2334444343344443 344577889988764322111 111
Q ss_pred CCCCCCCHHHHHHHHHH-HHHcCC---ccEEEecCcc--HHHHHHHHHhcC-CCCccccCCCCccccc----------HH
Q 035739 152 EDLLPMDYRGVWEAMEE-SQMLGL---TKSIGLSNFS--RKKIETILTFAT-IPPSINQVEMHPVWQQ----------RK 214 (335)
Q Consensus 152 ~~~~~~~~~~~~~~L~~-l~~~Gk---ir~iGvs~~~--~~~l~~~~~~~~-~~~~~~q~~~~~~~~~----------~~ 214 (335)
.....+++++++.+ +.+.|+ ++++=+.+++ .++++++.+... ++..++-++||+.... ..
T Consensus 234 ---~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~La~~l~~l~~~VnLIPynp~~~~~~~~ps~e~i~~ 310 (345)
T PRK14457 234 ---KNYPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEELANLLRGFQSHVNLIPYNPIDEVEFQRPSPKRIQA 310 (345)
T ss_pred ---cCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHHHHHHHhcCCCeEEEecCCCCCCCCCCCCCHHHHHH
Confidence 12347778877766 444553 4555555444 566666665533 4456777888886321 33
Q ss_pred HHHHHHHcCCeEEEeccCCC
Q 035739 215 LIEFCKAKGIIVTAYSPLGA 234 (335)
Q Consensus 215 ~l~~~~~~gi~v~a~~pl~~ 234 (335)
+.+..+++|+.+......+.
T Consensus 311 f~~~L~~~Gi~vtvR~~~G~ 330 (345)
T PRK14457 311 FQRVLEQRGVAVSVRASRGL 330 (345)
T ss_pred HHHHHHHCCCeEEEeCCCCC
Confidence 55667778888887766644
No 184
>PRK02301 putative deoxyhypusine synthase; Provisional
Probab=29.22 E-value=4.8e+02 Score=24.35 Aligned_cols=137 Identities=11% Similarity=0.041 Sum_probs=70.9
Q ss_pred HHHHHHHHHHH-HcCCCEeeCCCCcCCHHHHHHHHHHHHHcCCCCCCCceEEeeccCCCCCChhhHHHHH----------
Q 035739 49 DALKLVVLEAI-KLGYRHFDTAAMYGTEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPAL---------- 117 (335)
Q Consensus 49 ~~~~~~l~~A~-~~Gin~~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~~---------- 117 (335)
.++.+++.+.+ +.+.+.|=|=..-=.-.-++..|+..++.|. =+++|+|=... .+.+.+++
T Consensus 43 ~~A~~i~~~ml~~~~~~ifL~~tg~mvsaGlr~ii~~Li~~~~----VD~iVtTgani----ehD~~~~lg~~~y~G~~~ 114 (316)
T PRK02301 43 AEAVDIYEEMLADDDVTKFFGLAGAMVPAGMRGIVSDLIRDGH----IDVLVTTGANL----THDVIEAIGGHHHHGTAH 114 (316)
T ss_pred HHHHHHHHHHHhCCCCeEEEEcccchhHHHHHHHHHHHHHcCC----eeEEEcCCCch----HHHHHHHcCCCeeccCCC
Confidence 46777888887 5666654321111134556788887766653 25666665421 11222222
Q ss_pred --HHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHH-HHHHHHHHHcCCccEEEecCccHHHH-HHHHH
Q 035739 118 --KKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGV-WEAMEESQMLGLTKSIGLSNFSRKKI-ETILT 193 (335)
Q Consensus 118 --e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~l~~~Gkir~iGvs~~~~~~l-~~~~~ 193 (335)
+.-|++.|+++|==+++-.- ++ ...++. .+.++++.+++ .+++.++ .++-+
T Consensus 115 ~dd~~Lr~~ginRIgd~~ip~e---------------~y--~~~E~~i~~il~~~~~~~--------~~s~~e~i~~lGk 169 (316)
T PRK02301 115 AHDEELRDEGIDRIYDVYLPQE---------------HF--ADFEEFLQDVFPGLEEEG--------TVSIRDLLTEIGR 169 (316)
T ss_pred CCHHHHHHcCCCccceeCCChH---------------HH--HHHHHHHHHHHHhhhhcC--------CcCHHHHHHHHHh
Confidence 45566777666544444321 00 112222 22334443322 2454443 33322
Q ss_pred hcCCCCccccCCCCcccccHHHHHHHHHcCCeEEEeccC
Q 035739 194 FATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPL 232 (335)
Q Consensus 194 ~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~v~a~~pl 232 (335)
.. +.+..++.+|.++||+|++-...
T Consensus 170 ~i--------------~~e~Sil~~Ay~~~VPIf~Pa~~ 194 (316)
T PRK02301 170 DL--------------DDDSGILAAAYECDVPVYCPAIQ 194 (316)
T ss_pred hc--------------cCCCcHHHHHHHcCCCEECCCcc
Confidence 11 11467999999999999986544
No 185
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.11 E-value=2.6e+02 Score=29.06 Aligned_cols=69 Identities=17% Similarity=0.072 Sum_probs=45.3
Q ss_pred CChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHc--CCccEEEecCccH
Q 035739 108 AHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQML--GLTKSIGLSNFSR 185 (335)
Q Consensus 108 ~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~--Gkir~iGvs~~~~ 185 (335)
.+.+.|++-++.....-.....-+|+|+..+.- ....+.+|.+..++ +.+++|.+++...
T Consensus 104 ~gVDdIReLie~~~~~P~~gr~KViIIDEah~L------------------s~~AaNALLKTLEEPP~~v~FILaTtep~ 165 (700)
T PRK12323 104 RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML------------------TNHAFNAMLKTLEEPPEHVKFILATTDPQ 165 (700)
T ss_pred CCHHHHHHHHHHHHhchhcCCceEEEEEChHhc------------------CHHHHHHHHHhhccCCCCceEEEEeCChH
Confidence 345666666665544333345678888876432 33566777777777 8999999999876
Q ss_pred HHHHHHHHh
Q 035739 186 KKIETILTF 194 (335)
Q Consensus 186 ~~l~~~~~~ 194 (335)
..+..++..
T Consensus 166 kLlpTIrSR 174 (700)
T PRK12323 166 KIPVTVLSR 174 (700)
T ss_pred hhhhHHHHH
Confidence 555555553
No 186
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=28.83 E-value=2.9e+02 Score=25.86 Aligned_cols=125 Identities=17% Similarity=0.182 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHHHHHcCCccEEEecC-----ccHHHHHHHHHhcCCC-Ccc---ccCCC-------CcccccHHHHHHHH
Q 035739 157 MDYRGVWEAMEESQMLGLTKSIGLSN-----FSRKKIETILTFATIP-PSI---NQVEM-------HPVWQQRKLIEFCK 220 (335)
Q Consensus 157 ~~~~~~~~~L~~l~~~Gkir~iGvs~-----~~~~~l~~~~~~~~~~-~~~---~q~~~-------~~~~~~~~~l~~~~ 220 (335)
.+.+++.+.++.+++.| ++.|.+.. ...+.+.++++..+-. +.+ ...+. +......+.+...+
T Consensus 70 ls~eeI~e~~~~~~~~G-~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~Lk 148 (343)
T TIGR03551 70 LSLEEIAERAAEAWKAG-ATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLK 148 (343)
T ss_pred CCHHHHHHHHHHHHHCC-CCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 56899999999999987 66677662 2344444444433211 111 01100 11122367888889
Q ss_pred HcCCeEEEeccCCCCCCcCCCCccCChHHHHHHHHHhCCCHH--HHHHHHHhhcC----CEEEeCC-CCHHHHHHhhccc
Q 035739 221 AKGIIVTAYSPLGAVGKIYGSNQVLENEALKEIAKARGKTVA--QVSLRWIVEQG----ATVVIKS-LNLERMKQNLGIF 293 (335)
Q Consensus 221 ~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~g~s~~--q~al~~~l~~~----~~vi~g~-~~~~~l~enl~a~ 293 (335)
+.|+.-+. .. | ......+..+.++.. +.+.. --+++++...| +..++|. -+.++..+.+..+
T Consensus 149 eAGl~~i~----~~-~-----~E~~~~~v~~~i~~~-~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~Et~ed~~~~l~~l 217 (343)
T TIGR03551 149 EAGLDSMP----GT-A-----AEILDDEVRKVICPD-KLSTAEWIEIIKTAHKLGIPTTATIMYGHVETPEHWVDHLLIL 217 (343)
T ss_pred HhCccccc----Cc-c-----hhhcCHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCcccceEEEecCCCHHHHHHHHHHH
Confidence 98886553 11 1 112223333334321 12222 23566666665 5677884 4667777766554
No 187
>PRK00208 thiG thiazole synthase; Reviewed
Probab=28.82 E-value=4.3e+02 Score=23.71 Aligned_cols=72 Identities=11% Similarity=0.018 Sum_probs=50.8
Q ss_pred CCChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCccHH
Q 035739 107 NAHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSRK 186 (335)
Q Consensus 107 ~~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~ 186 (335)
.++.+...+-.+-..+-++++.|-|=.+..+.. ...+..+++++.++|.++|.+- +=+|+-++.
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~---------------llpd~~~tv~aa~~L~~~Gf~v-lpyc~~d~~ 135 (250)
T PRK00208 72 CRTAEEAVRTARLAREALGTNWIKLEVIGDDKT---------------LLPDPIETLKAAEILVKEGFVV-LPYCTDDPV 135 (250)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCC---------------CCcCHHHHHHHHHHHHHCCCEE-EEEeCCCHH
Confidence 345566666666677778888888877776532 2345889999999999999974 446666666
Q ss_pred HHHHHHHh
Q 035739 187 KIETILTF 194 (335)
Q Consensus 187 ~l~~~~~~ 194 (335)
...++.+.
T Consensus 136 ~ak~l~~~ 143 (250)
T PRK00208 136 LAKRLEEA 143 (250)
T ss_pred HHHHHHHc
Confidence 66666553
No 188
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=28.80 E-value=1.4e+02 Score=28.16 Aligned_cols=65 Identities=12% Similarity=0.026 Sum_probs=32.2
Q ss_pred HHHHHHHHHcCCcc-EEEecCccHHHHHHHHHhcCCCCccccCCCCcc---cccHHHHHHHHHcCCeEEEe
Q 035739 163 WEAMEESQMLGLTK-SIGLSNFSRKKIETILTFATIPPSINQVEMHPV---WQQRKLIEFCKAKGIIVTAY 229 (335)
Q Consensus 163 ~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~~l~~~~~~gi~v~a~ 229 (335)
++.+.+|++...+. +.|=+.++..++.++++.... .++|+...-. ..-.++...|+++|+.++..
T Consensus 227 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~--d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~ 295 (368)
T TIGR02534 227 REALARLTRRFNVPIMADESVTGPADALAIAKASAA--DVFALKTTKSGGLLESKKIAAIAEAAGIALYGG 295 (368)
T ss_pred HHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCC--CEEEEcccccCCHHHHHHHHHHHHHcCCceeee
Confidence 44455555554444 445555555566655554332 2444333321 11245566666666666544
No 189
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=28.71 E-value=4.8e+02 Score=24.27 Aligned_cols=108 Identities=14% Similarity=0.108 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHcCCCEeeCCCCcCCHHHHHHHHHHHHHcCCCCCCCceEEeeccCC---CCCChhhHHHHHHHHHHHhCC
Q 035739 50 ALKLVVLEAIKLGYRHFDTAAMYGTEKALGEAIAEALRLGLVSSREQLFITSKLWC---QNAHRDHVIPALKKSLSALQM 126 (335)
Q Consensus 50 ~~~~~l~~A~~~Gin~~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~---~~~~~~~i~~~~e~sL~~Lg~ 126 (335)
.-+++|+++-+.|| .+|.|.. +++.+=.++. -.+..+|+|.... .++.++--.++++...++=|+
T Consensus 150 ~Gk~lV~~~N~LgI-iiDlSH~--s~kt~~Dvl~---------~s~~PviaSHSN~~al~~h~RNl~D~qlkaI~~~gGv 217 (313)
T COG2355 150 FGKELVREMNELGI-IIDLSHL--SDKTFWDVLD---------LSKAPVVASHSNARALVDHPRNLSDEQLKAIAETGGV 217 (313)
T ss_pred HHHHHHHHHHhcCC-EEEeccc--CCccHHHHHh---------ccCCceEEecCCchhccCCCCCCCHHHHHHHHhcCCE
Confidence 35789999999998 5787754 4555555555 3445666666532 234444556666666666664
Q ss_pred CccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecC
Q 035739 127 EYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSN 182 (335)
Q Consensus 127 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~ 182 (335)
|.+.++-..... .+ .....++++.+.++.+++.+=++++|+.+
T Consensus 218 --Igv~~~~~fl~~-~~----------~~~atldd~v~hI~h~v~~~G~dhVglGs 260 (313)
T COG2355 218 --IGVNFIPAFLRP-GG----------AARATLDDLVRHIDHFVELVGIDHVGLGS 260 (313)
T ss_pred --EEEEeehhhccC-CC----------CCCCCHHHHHHHHHHHHHhcCcceeEecc
Confidence 444443322111 00 00234889999999999998899999965
No 190
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=28.69 E-value=4.6e+02 Score=25.33 Aligned_cols=113 Identities=14% Similarity=0.046 Sum_probs=64.9
Q ss_pred CCcCCHHHHHHHHHHHHHcCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCC
Q 035739 70 AMYGTEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPE 149 (335)
Q Consensus 70 ~~Ygse~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~ 149 (335)
-.||.++.|-++|++..+.- +.+-++|.|=+.+.-. -+.+..-+++. +++ .++++.+|.|......
T Consensus 66 ~V~Gg~~kL~~~I~~~~~~~---~p~~I~V~ttC~~~~I-GdDi~~v~~~~-~~~---~~~vi~v~t~gf~g~~------ 131 (427)
T cd01971 66 IVFGGEDRLRELIKSTLSII---DADLFVVLTGCIAEII-GDDVGAVVSEF-QEG---GAPIVYLETGGFKGNN------ 131 (427)
T ss_pred eEeCCHHHHHHHHHHHHHhC---CCCEEEEEcCCcHHHh-hcCHHHHHHHh-hhc---CCCEEEEECCCcCccc------
Confidence 46888888889988865432 4555777766543211 23344444433 343 3689999998764320
Q ss_pred CCCCCCCCCHHHHHHHHHH-HH------HcCCccEEEecC-------ccHHHHHHHHHhcCCCCccc
Q 035739 150 PKEDLLPMDYRGVWEAMEE-SQ------MLGLTKSIGLSN-------FSRKKIETILTFATIPPSIN 202 (335)
Q Consensus 150 ~~~~~~~~~~~~~~~~L~~-l~------~~Gkir~iGvs~-------~~~~~l~~~~~~~~~~~~~~ 202 (335)
....+.++++|-+ +. +.+.|--||..+ .+.+.+.++++..++.+..+
T Consensus 132 ------~~G~~~a~~al~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~ 192 (427)
T cd01971 132 ------YAGHEIVLKAIIDQYVGQSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNIL 192 (427)
T ss_pred ------ccHHHHHHHHHHHHhccCCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEE
Confidence 1123344444433 22 235677888642 23577888999888665433
No 191
>PRK00396 rnpA ribonuclease P; Reviewed
Probab=28.68 E-value=2.7e+02 Score=22.21 Aligned_cols=64 Identities=14% Similarity=0.094 Sum_probs=41.8
Q ss_pred CCCceEEeeccCCCCCChhhHHHHHHHHHHHhC--CCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 035739 93 SREQLFITSKLWCQNAHRDHVIPALKKSLSALQ--MEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQ 170 (335)
Q Consensus 93 ~R~~~~i~tK~~~~~~~~~~i~~~~e~sL~~Lg--~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 170 (335)
.|=.+.|+-|....-..+..+++.+.++.+... +.-.|++++-.+... ..+..++.+.|..|.
T Consensus 46 ~RiG~~VsKK~~g~AV~RNRiKR~lRE~fR~~~~~l~g~DiVviaR~~~~---------------~~~~~~l~~~l~~ll 110 (130)
T PRK00396 46 PRLGLVIGKKSVKLAVDRNRLKRLIRESFRLNQHSLAGWDIVVVARKGLG---------------ELENPELHQQFGKLW 110 (130)
T ss_pred ccEEEEEecccCccHhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCcc---------------cCCHHHHHHHHHHHH
Confidence 455566777743334556788888888877653 346899999987542 344667777776664
Q ss_pred H
Q 035739 171 M 171 (335)
Q Consensus 171 ~ 171 (335)
+
T Consensus 111 ~ 111 (130)
T PRK00396 111 K 111 (130)
T ss_pred H
Confidence 3
No 192
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=28.50 E-value=1.9e+02 Score=25.03 Aligned_cols=61 Identities=11% Similarity=0.086 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHcCCccEEEecCcc-HHHHHHHHHhcCCCCccccCCCCcccccHHHHHHHHHcCCeEEE
Q 035739 161 GVWEAMEESQMLGLTKSIGLSNFS-RKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTA 228 (335)
Q Consensus 161 ~~~~~L~~l~~~Gkir~iGvs~~~-~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~v~a 228 (335)
+.++.+++++++..=-.||..+.. .++++.+++. +-.+. .+|.. ..+++++|+++|+.++.
T Consensus 45 ~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~a-GA~Fi-----vsP~~-~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 45 VALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDA-GAQFI-----VSPGL-TPELAKHAQDHGIPIIP 106 (204)
T ss_pred cHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHc-CCCEE-----ECCCC-CHHHHHHHHHcCCcEEC
Confidence 455666666665432468988875 7778877774 32222 22322 46999999999998877
No 193
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=27.86 E-value=2.3e+02 Score=23.79 Aligned_cols=94 Identities=10% Similarity=-0.094 Sum_probs=50.6
Q ss_pred HHHcCCccEEEecCccHHHHH----HHHHhcCCCCccccCCCCccccc----------HHHHHHHHHcCCeEEEeccCCC
Q 035739 169 SQMLGLTKSIGLSNFSRKKIE----TILTFATIPPSINQVEMHPVWQQ----------RKLIEFCKAKGIIVTAYSPLGA 234 (335)
Q Consensus 169 l~~~Gkir~iGvs~~~~~~l~----~~~~~~~~~~~~~q~~~~~~~~~----------~~~l~~~~~~gi~v~a~~pl~~ 234 (335)
+.+...|...|++..+...+. +.+...+.+.+++++--|-..+. ..+++.++++|+.++...+-..
T Consensus 40 l~~~~~v~N~Gi~G~tt~~~~~rl~~~l~~~~pd~Vii~~GtND~~~~~~~~~~~~~l~~li~~~~~~~~~~ill~~~~P 119 (191)
T PRK10528 40 WQSKTSVVNASISGDTSQQGLARLPALLKQHQPRWVLVELGGNDGLRGFPPQQTEQTLRQIIQDVKAANAQPLLMQIRLP 119 (191)
T ss_pred HhhCCCEEecCcCcccHHHHHHHHHHHHHhcCCCEEEEEeccCcCccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 344566889999999876543 32322334556666666654321 4678889988876655432111
Q ss_pred CCCcCCCCccCChHHHHHHHHHhCCCHHH
Q 035739 235 VGKIYGSNQVLENEALKEIAKARGKTVAQ 263 (335)
Q Consensus 235 ~G~l~~~~~~~~~~~l~~la~~~g~s~~q 263 (335)
..........-.+.++++|+++++....
T Consensus 120 -~~~~~~~~~~~~~~~~~~a~~~~v~~id 147 (191)
T PRK10528 120 -ANYGRRYNEAFSAIYPKLAKEFDIPLLP 147 (191)
T ss_pred -CcccHHHHHHHHHHHHHHHHHhCCCccH
Confidence 0000000001123466777777765443
No 194
>TIGR00035 asp_race aspartate racemase.
Probab=27.51 E-value=1.9e+02 Score=25.25 Aligned_cols=83 Identities=12% Similarity=-0.038 Sum_probs=50.3
Q ss_pred hhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCccHHH-H
Q 035739 110 RDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSRKK-I 188 (335)
Q Consensus 110 ~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~-l 188 (335)
.+.+++-++..-.+.+-++++.+.+++|+..+. ... ...+.+ +.....+.+.++.|.+.| +.+|-+++.++.. +
T Consensus 16 ~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr--~~~-~~~~~~-~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~~~ 90 (229)
T TIGR00035 16 AELFRRINEKTKAKRDQEHPAEVLFNNPNIPDR--TAY-ILGRGE-DRPRPILIDIAVKLENAG-ADFIIMPCNTAHKFA 90 (229)
T ss_pred HHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHH--HHH-HhcCCc-chHHHHHHHHHHHHHHcC-CCEEEECCccHHHHH
Confidence 455666666666778889999999999864211 000 000011 112445677777776654 7999999998666 4
Q ss_pred HHHHHhcCC
Q 035739 189 ETILTFATI 197 (335)
Q Consensus 189 ~~~~~~~~~ 197 (335)
+++.+...+
T Consensus 91 ~~l~~~~~i 99 (229)
T TIGR00035 91 EDIQKAIGI 99 (229)
T ss_pred HHHHHhCCC
Confidence 444443443
No 195
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=27.33 E-value=5.4e+02 Score=25.22 Aligned_cols=130 Identities=16% Similarity=0.242 Sum_probs=65.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCccEEEecC-----c-----cHHHHHHHHHhcCC-C-C-ccccCCCCcccccHHHHHHH
Q 035739 153 DLLPMDYRGVWEAMEESQMLGLTKSIGLSN-----F-----SRKKIETILTFATI-P-P-SINQVEMHPVWQQRKLIEFC 219 (335)
Q Consensus 153 ~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~-----~-----~~~~l~~~~~~~~~-~-~-~~~q~~~~~~~~~~~~l~~~ 219 (335)
.....+.+++.+.++.+.+.| ++.|-+.. + +...+.++++...- + . .+--...++..-..++++..
T Consensus 180 ~~rsr~~e~Il~ei~~l~~~G-~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~~gi~~ir~~~~~p~~i~~ell~~l 258 (459)
T PRK14338 180 RERSRPLAEIVEEVRRIAARG-AKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEIPGLERLRFLTSHPAWMTDRLIHAV 258 (459)
T ss_pred CCccCCHHHHHHHHHHHHHCC-CeEEEEeeecCCCcccccCChHHHHHHHHHHHhcCCcceEEEEecChhhcCHHHHHHH
Confidence 344667899999999999998 56554433 1 12235555544321 1 0 11111223433446788888
Q ss_pred HHcCCeE-EEeccCCCCCCcCCCCccCChHHHHHHHHHhCCCHHHHHHHHHhhc--C----CEEEeCC--CCHHHHHHhh
Q 035739 220 KAKGIIV-TAYSPLGAVGKIYGSNQVLENEALKEIAKARGKTVAQVSLRWIVEQ--G----ATVVIKS--LNLERMKQNL 290 (335)
Q Consensus 220 ~~~gi~v-~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~g~s~~q~al~~~l~~--~----~~vi~g~--~~~~~l~enl 290 (335)
++.+.++ ...-++-+ ...+.++.+.+.+...-..-+++.+... + +..|+|. -+.+++++.+
T Consensus 259 ~~~~~~~~~v~lglQS----------gsd~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~i~~d~IvG~PgET~ed~~~ti 328 (459)
T PRK14338 259 ARLPKCCPHINLPVQA----------GDDEVLKRMRRGYTVARYRELIARIREAIPDVSLTTDIIVGHPGETEEQFQRTY 328 (459)
T ss_pred hcccccccceecCccc----------CCHHHHHhccCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEECCCCCHHHHHHHH
Confidence 7754321 11112211 1334555554444322223345555544 3 2356664 3677777776
Q ss_pred ccc
Q 035739 291 GIF 293 (335)
Q Consensus 291 ~a~ 293 (335)
+.+
T Consensus 329 ~~l 331 (459)
T PRK14338 329 DLL 331 (459)
T ss_pred HHH
Confidence 654
No 196
>COG3113 Predicted NTP binding protein (contains STAS domain) [General function prediction only]
Probab=27.32 E-value=1.1e+02 Score=23.14 Aligned_cols=66 Identities=14% Similarity=0.145 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCccHHHHHHHH
Q 035739 113 VIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSRKKIETIL 192 (335)
Q Consensus 113 i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~ 192 (335)
+=.+.+..++..++-++|+=.+-..|... ..-+.+.++.+|+.|+ ++-++..+ +++..+.
T Consensus 28 lw~~r~~~~~~~~~~~idLs~v~rvDSag-----------------lALL~~~~~~~k~~g~--~~~L~~~p-~~L~tLa 87 (99)
T COG3113 28 LWSQREAQLKQLDTVRIDLSGVSRVDSAG-----------------LALLLHLIRLAKKQGN--AVTLTGVP-EQLRTLA 87 (99)
T ss_pred HHHHHHHHccccCeEEEehhhcceechHH-----------------HHHHHHHHHHHHHcCC--eeEEecCc-HHHHHHH
Confidence 34455666777788899998888876532 5567889999999998 55555554 7777777
Q ss_pred HhcCCC
Q 035739 193 TFATIP 198 (335)
Q Consensus 193 ~~~~~~ 198 (335)
+.++++
T Consensus 88 ~Ly~l~ 93 (99)
T COG3113 88 ELYNLS 93 (99)
T ss_pred HHhCcH
Confidence 766643
No 197
>COG2055 Malate/L-lactate dehydrogenases [Energy production and conversion]
Probab=27.17 E-value=3.4e+02 Score=25.65 Aligned_cols=91 Identities=16% Similarity=0.174 Sum_probs=52.6
Q ss_pred CChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCccHHH
Q 035739 108 AHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSRKK 187 (335)
Q Consensus 108 ~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~ 187 (335)
.+++.++.-+++.|.+.|++.-| -..+-+.|-.. - ..|+.+|....
T Consensus 6 ~~~e~L~~~~~~vl~~~G~~ee~----------------------------A~~vA~~lv~a---d---~~G~~SHGv~r 51 (349)
T COG2055 6 VSAEELKALIEEVLRKAGVPEED----------------------------ARAVADVLVAA---D---LRGVDSHGVGR 51 (349)
T ss_pred ecHHHHHHHHHHHHHHcCCCHHH----------------------------HHHHHHHHHHH---H---hcCCcccchHH
Confidence 45688899999999999864211 11122222221 1 36888888888
Q ss_pred HHHHHHhcC---CC----Cccc-------cCCCCccccc-------HHHHHHHHHcCCeEEEeccC
Q 035739 188 IETILTFAT---IP----PSIN-------QVEMHPVWQQ-------RKLIEFCKAKGIIVTAYSPL 232 (335)
Q Consensus 188 l~~~~~~~~---~~----~~~~-------q~~~~~~~~~-------~~~l~~~~~~gi~v~a~~pl 232 (335)
+..+++..+ +. |.++ ++.-+--.-+ ...++.|+++||++++-.--
T Consensus 52 ~p~yi~~l~~G~i~~~a~~~i~~~~~a~~~iDa~~g~G~~a~~~am~~aie~Ak~~Gia~vav~ns 117 (349)
T COG2055 52 LPGYVRRLKAGKINPDAEPEIVREAPAVAVLDADGGFGQVAAKKAMELAIEKAKQHGIAAVAVRNS 117 (349)
T ss_pred HHHHHHHHHcCCcCCCCceEEEeecCcEEEEeCCCCcchHHHHHHHHHHHHHHHHhCeeEEEEecC
Confidence 777766432 21 2222 2211111111 45789999999999886433
No 198
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=27.06 E-value=4.2e+02 Score=23.01 Aligned_cols=84 Identities=10% Similarity=0.110 Sum_probs=49.9
Q ss_pred CChHHHHHHHHHHHHc-----CCCEeeCCCCcCCHHHHHHHHHHHHHcCCCCCCCceEEeeccCC---------------
Q 035739 46 SDTDALKLVVLEAIKL-----GYRHFDTAAMYGTEKALGEAIAEALRLGLVSSREQLFITSKLWC--------------- 105 (335)
Q Consensus 46 ~~~~~~~~~l~~A~~~-----Gin~~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~--------------- 105 (335)
.++++....++.+++. |+|--=-+....++..+...++.. . .|.-+||=++...
T Consensus 71 ~~~~~i~~~l~~al~~vp~a~GvnNhmGS~~T~~~~~m~~vl~~l---~---~~gl~FvDS~T~~~s~a~~~A~~~gvp~ 144 (213)
T PF04748_consen 71 MSEEEIRKRLEAALARVPGAVGVNNHMGSRFTSDREAMRWVLEVL---K---ERGLFFVDSRTTPRSVAPQVAKELGVPA 144 (213)
T ss_dssp S-HHHHHHHHHHHHCCSTT-SEEEEEE-CCHHC-HHHHHHHHHHH---H---HTT-EEEE-S--TT-SHHHHHHHCT--E
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEecCCCccccCCHHHHHHHHHHH---H---HcCCEEEeCCCCcccHHHHHHHHcCCCE
Confidence 3778888888998865 444332222222677777666654 1 4555667333311
Q ss_pred --------CCCChhhHHHHHHHHHHHhCCCccceEEee
Q 035739 106 --------QNAHRDHVIPALKKSLSALQMEYLDLYLVH 135 (335)
Q Consensus 106 --------~~~~~~~i~~~~e~sL~~Lg~d~iDl~~lH 135 (335)
...+.+.|++++++..+.-+..-.=+..-|
T Consensus 145 ~~rdvfLD~~~~~~~I~~ql~~~~~~A~~~G~aI~Igh 182 (213)
T PF04748_consen 145 ARRDVFLDNDQDEAAIRRQLDQAARIARKQGSAIAIGH 182 (213)
T ss_dssp EE-SEETTST-SHHHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred EeeceecCCCCCHHHHHHHHHHHHHhhhhcCcEEEEEc
Confidence 235688999999999888876666666666
No 199
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=26.93 E-value=3.3e+02 Score=24.37 Aligned_cols=78 Identities=17% Similarity=0.174 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHcCCCEeeCCCCcC--CHHHHHHHHHHHHHcCCCCCCCceEEeeccCCCCC------ChhhHHHHHHHH
Q 035739 49 DALKLVVLEAIKLGYRHFDTAAMYG--TEKALGEAIAEALRLGLVSSREQLFITSKLWCQNA------HRDHVIPALKKS 120 (335)
Q Consensus 49 ~~~~~~l~~A~~~Gin~~DtA~~Yg--se~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~------~~~~i~~~~e~s 120 (335)
..+.+.++.|-+.|++.++.++.+- ++...-++++.. ....+.+.+-++.++. +++...+++++-
T Consensus 84 ~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~-------~~~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~d 156 (244)
T PF02679_consen 84 GKFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKA-------KEEGFKVLSEVGKKDPESDFSLDPEELIEQAKRD 156 (244)
T ss_dssp T-HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHH-------CCTTSEEEEEES-SSHHHHTT--CCHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHH-------HHCCCEEeecccCCCchhcccCCHHHHHHHHHHH
Confidence 4567788889999999999999887 666667788875 5666888888876432 356677777777
Q ss_pred HHHhCCCccceEEeecC
Q 035739 121 LSALQMEYLDLYLVHWP 137 (335)
Q Consensus 121 L~~Lg~d~iDl~~lH~p 137 (335)
|+. | .|.+++-.-
T Consensus 157 LeA-G---A~~ViiEar 169 (244)
T PF02679_consen 157 LEA-G---ADKVIIEAR 169 (244)
T ss_dssp HHH-T---ECEEEE--T
T ss_pred HHC-C---CCEEEEeee
Confidence 765 5 466777644
No 200
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=26.90 E-value=1.6e+02 Score=25.77 Aligned_cols=55 Identities=24% Similarity=0.357 Sum_probs=34.6
Q ss_pred HHHHHHHHcC-CeEEEeccCCCCCCcCCCCccCChHHHHHHHHHhCCCHHHHHHHHHhhcCCEEEeC
Q 035739 214 KLIEFCKAKG-IIVTAYSPLGAVGKIYGSNQVLENEALKEIAKARGKTVAQVSLRWIVEQGATVVIK 279 (335)
Q Consensus 214 ~~l~~~~~~g-i~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~g~s~~q~al~~~l~~~~~vi~g 279 (335)
++++.|.+.| |+|-.+.-|+.-|.+ ...-+-.++|+|+.| |++|+...-.-.|+|
T Consensus 139 ~i~e~~~~~g~iaVHCkaGlGRTG~l----------iAc~lmy~~g~ta~e-aI~~lR~~RpG~V~g 194 (225)
T KOG1720|consen 139 KIVENAEKGGKIAVHCKAGLGRTGTL----------IACYLMYEYGMTAGE-AIAWLRICRPGAVIG 194 (225)
T ss_pred HHHHHHHhcCeEEEEeccCCCchhHH----------HHHHHHHHhCCCHHH-HHHHHHhcCCccccC
Confidence 4667777744 677777666542211 122355679999999 999999865444443
No 201
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=26.75 E-value=4.4e+02 Score=23.10 Aligned_cols=111 Identities=10% Similarity=0.120 Sum_probs=72.1
Q ss_pred eeccCCCCCChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCc----
Q 035739 100 TSKLWCQNAHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLT---- 175 (335)
Q Consensus 100 ~tK~~~~~~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gki---- 175 (335)
++|....+.-.......++..-+......++-+++..... .....|.+...+.|.+.|.-
T Consensus 65 tsky~~~g~~N~yy~~Ri~aA~~ly~~gKV~~LLlSGDN~----------------~~sYnEp~tM~kdL~~~GVp~~~i 128 (235)
T COG2949 65 TSKYLAKGPPNRYYTYRIDAAIALYKAGKVNYLLLSGDNA----------------TVSYNEPRTMRKDLIAAGVPAKNI 128 (235)
T ss_pred ccccccCCCccHhHHHHHHHHHHHHhcCCeeEEEEecCCC----------------cccccchHHHHHHHHHcCCCHHHe
Confidence 4566555444466777888888888888999999986543 33477888999999999863
Q ss_pred --cEEEecCccHHHHHHHHHhcCC-CCccccCCCCcccccHHHHHHHHHcCCeEEEeccC
Q 035739 176 --KSIGLSNFSRKKIETILTFATI-PPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPL 232 (335)
Q Consensus 176 --r~iGvs~~~~~~l~~~~~~~~~-~~~~~q~~~~~~~~~~~~l~~~~~~gi~v~a~~pl 232 (335)
.+-|+++.+ .+.++.+..+. ++.++-=+|+ .+..+=.|+.+||.-+++..=
T Consensus 129 ~lDyAGFrTLD--SvvRA~kVF~~~~ftIItQ~FH----ceRAlfiA~~~gIdAic~~ap 182 (235)
T COG2949 129 FLDYAGFRTLD--SVVRARKVFGTNDFTIITQRFH----CERALFIARQMGIDAICFAAP 182 (235)
T ss_pred eecccCccHHH--HHHHHHHHcCcCcEEEEecccc----cHHHHHHHHHhCCceEEecCC
Confidence 355666553 44445444432 1222211222 256788899999988887543
No 202
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=26.60 E-value=1.5e+02 Score=28.40 Aligned_cols=78 Identities=14% Similarity=0.130 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCccHHHHHHHHHhcCCCCccccCCCCccccc---HHHHHHHHHcC-CeEEEeccCCC
Q 035739 159 YRGVWEAMEESQMLGLTKSIGLSNFSRKKIETILTFATIPPSINQVEMHPVWQQ---RKLIEFCKAKG-IIVTAYSPLGA 234 (335)
Q Consensus 159 ~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~~l~~~~~~g-i~v~a~~pl~~ 234 (335)
+.++...++++....-|...=+...+.+.++++++. ..+.++...+-||..+- ..+.+.|+++| +.++.=+.++.
T Consensus 104 Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~-~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~at 182 (386)
T PF01053_consen 104 YGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRP-NTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFAT 182 (386)
T ss_dssp SHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCT-TEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTH
T ss_pred cCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccc-cceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccc
Confidence 567888888866666665444444567888888775 45567888888887664 67889999999 99999988876
Q ss_pred CCCc
Q 035739 235 VGKI 238 (335)
Q Consensus 235 ~G~l 238 (335)
+.+
T Consensus 183 -p~~ 185 (386)
T PF01053_consen 183 -PYN 185 (386)
T ss_dssp -TTT
T ss_pred -eee
Confidence 544
No 203
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=26.59 E-value=7.8e+02 Score=25.95 Aligned_cols=91 Identities=11% Similarity=0.124 Sum_probs=45.6
Q ss_pred CCceEEeeccCCCCC-----ChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 035739 94 REQLFITSKLWCQNA-----HRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEE 168 (335)
Q Consensus 94 R~~~~i~tK~~~~~~-----~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 168 (335)
.+++-|..|+...+. +.+... .+-+.|+..|+|+|| +|......... + .+...... ....+
T Consensus 616 ~~~~~v~~ri~~~~~~~~g~~~~~~~-~~~~~l~~~g~d~i~---vs~g~~~~~~~---~----~~~~~~~~---~~~~~ 681 (765)
T PRK08255 616 PAEKPMSVRISAHDWVEGGNTPDDAV-EIARAFKAAGADLID---VSSGQVSKDEK---P----VYGRMYQT---PFADR 681 (765)
T ss_pred CCCCeeEEEEccccccCCCCCHHHHH-HHHHHHHhcCCcEEE---eCCCCCCcCCC---C----CcCccccH---HHHHH
Confidence 457888999865332 222222 344456677765544 55432111000 0 00000011 22345
Q ss_pred HHHcCCccEEEecCc-cHHHHHHHHHhcCCC
Q 035739 169 SQMLGLTKSIGLSNF-SRKKIETILTFATIP 198 (335)
Q Consensus 169 l~~~Gkir~iGvs~~-~~~~l~~~~~~~~~~ 198 (335)
+|+.=++--+++.+. +++.++++++....+
T Consensus 682 ik~~~~~pv~~~G~i~~~~~a~~~l~~g~~D 712 (765)
T PRK08255 682 IRNEAGIATIAVGAISEADHVNSIIAAGRAD 712 (765)
T ss_pred HHHHcCCEEEEeCCCCCHHHHHHHHHcCCcc
Confidence 555555667787777 477788888866543
No 204
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=26.58 E-value=4.4e+02 Score=23.13 Aligned_cols=85 Identities=6% Similarity=0.198 Sum_probs=50.0
Q ss_pred HHHHHHHHHcCCeEEEeccCCCCCCcCCCCccCChHHHHHHHHHhCC---------CHHHHHHHHHhhcC-CEEEeCCCC
Q 035739 213 RKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLENEALKEIAKARGK---------TVAQVSLRWIVEQG-ATVVIKSLN 282 (335)
Q Consensus 213 ~~~l~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~g~---------s~~q~al~~~l~~~-~~vi~g~~~ 282 (335)
.++.+..++.|+..++++.+.. - .....+..+|++.|+ +..++.-.++ ..| .++|++++.
T Consensus 75 e~l~~~l~~~gv~~vv~GdI~s-~--------~qr~~~e~v~~~lgl~~~~PLW~~~~~~ll~e~i-~~G~~aiIv~v~a 144 (223)
T TIGR00290 75 EELKGILHTLDVEAVVFGAIYS-E--------YQKTRIERVCRELGLKSFAPLWHRDPEKLMEEFV-EEKFEARIIAVAA 144 (223)
T ss_pred HHHHHHHHHcCCCEEEECCccc-H--------HHHHHHHHHHHhcCCEEeccccCCCHHHHHHHHH-HcCCeEEEEEEec
Confidence 4566667777877777655543 0 123456677777653 4555444444 667 556655543
Q ss_pred HHHHHHhhccccccCCHHHHHHHhccCC
Q 035739 283 LERMKQNLGIFDWKLTDDDYDKINQIPQ 310 (335)
Q Consensus 283 ~~~l~enl~a~~~~L~~~~~~~l~~~~~ 310 (335)
. .|.. +-++..++++.++.|.++.+
T Consensus 145 ~-gL~~--~~LGr~i~~e~i~~L~~~~~ 169 (223)
T TIGR00290 145 E-GLDE--SWLGRRIDRKMIDELKKLNE 169 (223)
T ss_pred C-CCCh--HHcCCcccHHHHHHHHHHHh
Confidence 2 3332 33456899888888877644
No 205
>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=26.55 E-value=47 Score=30.96 Aligned_cols=70 Identities=13% Similarity=0.162 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCccHHH-----HHHHHHhcCCC--Cccc------------cCCCCcccccHHHHHHH
Q 035739 159 YRGVWEAMEESQMLGLTKSIGLSNFSRKK-----IETILTFATIP--PSIN------------QVEMHPVWQQRKLIEFC 219 (335)
Q Consensus 159 ~~~~~~~L~~l~~~Gkir~iGvs~~~~~~-----l~~~~~~~~~~--~~~~------------q~~~~~~~~~~~~l~~~ 219 (335)
...++..++++.+.+.++-|.+-.|.+.+ ++.+.++..-+ ...- |-.|+.- ....+...|
T Consensus 141 ~~~~l~~~e~~~~~p~v~LiSlMDH~PGQrQf~~le~Y~~yy~~k~~~s~~e~~~~i~~r~a~~~~y~~~-~r~~i~~~c 219 (377)
T COG3454 141 HPATLPLFEDLMDHPRVKLISLMDHTPGQRQFANLEKYREYYQGKRGLSDEEFAEFIEERQALSARYSDP-NRQAIAALC 219 (377)
T ss_pred ChhHHHHHHHHhcCCCeeEEEecCCCCCcchhhhHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcccc-hHHHHHHHH
Confidence 56789999999999999999999998664 55555543211 1111 1112211 115688999
Q ss_pred HHcCCeEEEe
Q 035739 220 KAKGIIVTAY 229 (335)
Q Consensus 220 ~~~gi~v~a~ 229 (335)
+++||.+-.+
T Consensus 220 ~~rgI~lASH 229 (377)
T COG3454 220 RERGIALASH 229 (377)
T ss_pred HHcCCceecC
Confidence 9999987654
No 206
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=26.37 E-value=9.7e+02 Score=27.01 Aligned_cols=57 Identities=12% Similarity=0.015 Sum_probs=43.4
Q ss_pred EEEecCccHHHHHHHHHhcCCCCccccCCCCcccc-cHHHHHHHHHcCCeEEEeccCC
Q 035739 177 SIGLSNFSRKKIETILTFATIPPSINQVEMHPVWQ-QRKLIEFCKAKGIIVTAYSPLG 233 (335)
Q Consensus 177 ~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~-~~~~l~~~~~~gi~v~a~~pl~ 233 (335)
-|-+-+..++.++.+++...-.+.+|-++.--.+. -.++++.|+++|..++++.--.
T Consensus 433 PlsIDS~~~~ViEaaLk~~~G~~IINSIs~~~~~~~~~~~~~l~~kyga~vV~m~~de 490 (1229)
T PRK09490 433 PIMIDSSKWEVIEAGLKCIQGKGIVNSISLKEGEEKFIEHARLVRRYGAAVVVMAFDE 490 (1229)
T ss_pred eEEEeCCcHHHHHHHHhhcCCCCEEEeCCCCCCCccHHHHHHHHHHhCCCEEEEecCC
Confidence 48888999999999999876667777665543222 2478999999999999985433
No 207
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=26.21 E-value=4.9e+02 Score=23.50 Aligned_cols=76 Identities=14% Similarity=0.131 Sum_probs=51.1
Q ss_pred HHHHHcCCCEeeCCC-CcC--CHHHHHHHHHHHHHcCCCCCCCceEEeeccCCC----CCCh---hhHHHHHHHHHHHhC
Q 035739 56 LEAIKLGYRHFDTAA-MYG--TEKALGEAIAEALRLGLVSSREQLFITSKLWCQ----NAHR---DHVIPALKKSLSALQ 125 (335)
Q Consensus 56 ~~A~~~Gin~~DtA~-~Yg--se~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~----~~~~---~~i~~~~e~sL~~Lg 125 (335)
...+....|.+..-. .|. +++.+-++.++ ..+++..+.|+... .... ..+.+.+.+-++.||
T Consensus 30 L~~y~~~f~~VEiN~TFYa~p~~~t~~~W~~~--------~p~~FrFsvK~~~~iTH~~~l~~~~~~~~~~~~~~~~~L~ 101 (263)
T COG1801 30 LAYYASHFNTVEINSTFYAPPSPETVLRWAEE--------TPDDFRFSVKAPRAITHQRRLKECDFELWEFFLEPLAPLG 101 (263)
T ss_pred HHHHhccCCEEEECCcccCCCCHHHHHHHHHh--------CCCCeEEEEEecccccchhhhccchHHHHHHHHHHHHhhh
Confidence 344566677765433 565 78888888875 68999999999531 1112 344555555566777
Q ss_pred CCccceEEeecCCCC
Q 035739 126 MEYLDLYLVHWPISS 140 (335)
Q Consensus 126 ~d~iDl~~lH~p~~~ 140 (335)
+++..+++--|-..
T Consensus 102 -~klg~il~Q~Ppsf 115 (263)
T COG1801 102 -ERLGPILFQLPPSF 115 (263)
T ss_pred -cccceEEEecCCcc
Confidence 69999999988543
No 208
>PF11181 YflT: Heat induced stress protein YflT
Probab=26.04 E-value=1.2e+02 Score=22.99 Aligned_cols=29 Identities=28% Similarity=0.465 Sum_probs=24.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCCceEEeec
Q 035739 72 YGTEKALGEAIAEALRLGLVSSREQLFITSK 102 (335)
Q Consensus 72 Ygse~~lG~~l~~~~~~g~~~~R~~~~i~tK 102 (335)
|.++.-+-.++.+..++|+ ..++++|.||
T Consensus 6 ~~~~~E~~~~I~~L~~~Gy--~~ddI~Vva~ 34 (103)
T PF11181_consen 6 YDNEEEALSAIEELKAQGY--SEDDIYVVAK 34 (103)
T ss_pred ECCHHHHHHHHHHHHHcCC--CcccEEEEEc
Confidence 4466667788888888899 8999999998
No 209
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=26.02 E-value=1.9e+02 Score=28.00 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=18.6
Q ss_pred HHHHHHHHHcCCeEEEeccCCC
Q 035739 213 RKLIEFCKAKGIIVTAYSPLGA 234 (335)
Q Consensus 213 ~~~l~~~~~~gi~v~a~~pl~~ 234 (335)
..++.||.+++|.++.-..+++
T Consensus 249 ~~ll~Fa~~kniHvI~DEIya~ 270 (471)
T KOG0256|consen 249 ISLLNFASRKNIHVISDEIYAG 270 (471)
T ss_pred HHHHHHHhhcceEEEeehhhcc
Confidence 5688999999999998887775
No 210
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=25.92 E-value=5.2e+02 Score=23.70 Aligned_cols=180 Identities=17% Similarity=0.085 Sum_probs=89.8
Q ss_pred ceeeCcccCccccccCCCChHHHHHHHHHHH-HcCCCEeeCCCCcCC------HHHHHHHHHHHHHcCCCCCCCceEEee
Q 035739 29 IGLGCAVDKCLRCAVDKSDTDALKLVVLEAI-KLGYRHFDTAAMYGT------EKALGEAIAEALRLGLVSSREQLFITS 101 (335)
Q Consensus 29 lg~G~~~~~~~~~~~~~~~~~~~~~~l~~A~-~~Gin~~DtA~~Ygs------e~~lG~~l~~~~~~g~~~~R~~~~i~t 101 (335)
|.||.+.... ......+.++..+.+...+ ..|++.+|--..|+. -..+-++|+..-++ +..+.|+-
T Consensus 72 iS~GG~~g~~--~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~-----~p~l~vs~ 144 (294)
T cd06543 72 VSFGGASGTP--LATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKE-----YPDLKISF 144 (294)
T ss_pred EEecCCCCCc--cccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHH-----CCCcEEEE
Confidence 5666655321 1112235566666555555 569999998777761 24566777765222 22344443
Q ss_pred cc--CCCCCChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEE
Q 035739 102 KL--WCQNAHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIG 179 (335)
Q Consensus 102 K~--~~~~~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iG 179 (335)
-+ .+....+..+ .+-+..+.-|+ ++|.+-+--.+..... . ....-..+..+.+.++.+=+--+=+
T Consensus 145 Tlp~~p~gl~~~g~--~~l~~a~~~Gv-~~d~VNiMtmDyg~~~------~----~~~mg~~a~~aa~~~~~ql~~~~~~ 211 (294)
T cd06543 145 TLPVLPTGLTPDGL--NVLEAAAANGV-DLDTVNIMTMDYGSSA------G----SQDMGAAAISAAESLHDQLKDLYPK 211 (294)
T ss_pred ecCCCCCCCChhHH--HHHHHHHHcCC-CcceeeeeeecCCCCC------C----cccHHHHHHHHHHHHHHHHHHHccC
Confidence 33 3333332222 34444455563 3444444333322110 0 0111344556666555431111111
Q ss_pred ecCccHHHHHHHHHhcCCCCccccCCCCc--cccc--HHHHHHHHHcCCeEEEeccCCC
Q 035739 180 LSNFSRKKIETILTFATIPPSINQVEMHP--VWQQ--RKLIEFCKAKGIIVTAYSPLGA 234 (335)
Q Consensus 180 vs~~~~~~l~~~~~~~~~~~~~~q~~~~~--~~~~--~~~l~~~~~~gi~v~a~~pl~~ 234 (335)
++..++- ...++.|.+-+..... +... ..+.+|++++||+.+.|..+..
T Consensus 212 ---~s~~~~~---~~ig~TpMiG~nD~~~e~ft~~da~~~~~fA~~~~l~~~s~Ws~~R 264 (294)
T cd06543 212 ---LSDAELW---AMIGVTPMIGVNDVGSEVFTLADAQTLVDFAKEKGLGRLSMWSLNR 264 (294)
T ss_pred ---CCHHHHH---HHccccccccccCCCCceeeHHHHHHHHHHHHhCCCCeEeeeeccC
Confidence 3323322 2334555555544332 2222 6899999999999999998865
No 211
>PRK14017 galactonate dehydratase; Provisional
Probab=25.88 E-value=3.4e+02 Score=25.76 Aligned_cols=67 Identities=21% Similarity=0.239 Sum_probs=49.2
Q ss_pred HHHHHHHHHcCCcc-EEEecCccHHHHHHHHHhcCCCCccccCCCCcc---cccHHHHHHHHHcCCeEEEecc
Q 035739 163 WEAMEESQMLGLTK-SIGLSNFSRKKIETILTFATIPPSINQVEMHPV---WQQRKLIEFCKAKGIIVTAYSP 231 (335)
Q Consensus 163 ~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~~l~~~~~~gi~v~a~~p 231 (335)
++.+.+|++...+. ..|=|.++...+..+++...+ .++|.....+ ..-.++.+.|+++||.++.++.
T Consensus 217 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~--d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~ 287 (382)
T PRK14017 217 AEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGV--DIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCP 287 (382)
T ss_pred HHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCC--CeEecCccccCCHHHHHHHHHHHHHcCCeEeecCC
Confidence 46778888877666 667777888899988886543 4666655543 2236889999999999888654
No 212
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=25.86 E-value=1.9e+02 Score=27.07 Aligned_cols=71 Identities=11% Similarity=0.130 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCccHHH-----HHHHHHhc----CCCCcc----------ccCCCCcccccHHHHHHH
Q 035739 159 YRGVWEAMEESQMLGLTKSIGLSNFSRKK-----IETILTFA----TIPPSI----------NQVEMHPVWQQRKLIEFC 219 (335)
Q Consensus 159 ~~~~~~~L~~l~~~Gkir~iGvs~~~~~~-----l~~~~~~~----~~~~~~----------~q~~~~~~~~~~~~l~~~ 219 (335)
..+.++.++.+.+.++|+.+.+-.|++.+ ++.+..+. +..+.- .|-.+. ...-..+++.|
T Consensus 94 ~~~~~~~~~~~~~~~~v~lvs~~dH~pg~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iv~~A 172 (325)
T cd01306 94 DPAVLPELESLMADPRVHLVSLMDHTPGQRQFRDLEKYREYYAKKYGLSDEEVEEAILERKARAAAYA-PANRSELAALA 172 (325)
T ss_pred CccHHHHHHHHhcCCCcCEEEEeCCCCccccccCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcC-HHHHHHHHHHH
Confidence 45788999999999999999999999776 33333332 111000 000011 01115688999
Q ss_pred HHcCCeEEEec
Q 035739 220 KAKGIIVTAYS 230 (335)
Q Consensus 220 ~~~gi~v~a~~ 230 (335)
+++|+.+.++-
T Consensus 173 ~~~gl~vasH~ 183 (325)
T cd01306 173 RARGIPLASHD 183 (325)
T ss_pred HHCCCcEEEec
Confidence 99999998875
No 213
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=25.86 E-value=1.5e+02 Score=21.72 Aligned_cols=64 Identities=16% Similarity=0.206 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHcCCccEEEecCccHHHHHHHHHhcCCCCccccCCCCcccccHHHHHHHHHcCCeEEEec
Q 035739 161 GVWEAMEESQMLGLTKSIGLSNFSRKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYS 230 (335)
Q Consensus 161 ~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~v~a~~ 230 (335)
.+...|...++.|++ .+|+ .+..+.++......++.--+.++.....-+..+|++++|+++-..
T Consensus 2 ~i~~~l~~a~~~~~l-v~G~-----~~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~ 65 (95)
T PF01248_consen 2 KIYKLLKLARKAGRL-VKGI-----KEVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVP 65 (95)
T ss_dssp HHHHHHHHHHHHSEE-EESH-----HHHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEES
T ss_pred hHHHHHHHHHhcCCE-EEch-----HHHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEEC
Confidence 355667777778874 4555 667777777666666666566654443447789999999997653
No 214
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.82 E-value=3.4e+02 Score=25.73 Aligned_cols=78 Identities=18% Similarity=0.143 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHHHcCC----ccEEEecCc--cHHHHHHHHHhcC-CCCccccCCCCccccc----------HHHHHHH
Q 035739 157 MDYRGVWEAMEESQMLGL----TKSIGLSNF--SRKKIETILTFAT-IPPSINQVEMHPVWQQ----------RKLIEFC 219 (335)
Q Consensus 157 ~~~~~~~~~L~~l~~~Gk----ir~iGvs~~--~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~----------~~~l~~~ 219 (335)
.+.++++++++.+.+.+. |+++=+..+ +.++++++.+... .+..++-++||+.... ..+.+.+
T Consensus 243 ~~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp~~~~ky~~ps~e~l~~f~~~L 322 (356)
T PRK14455 243 YPLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNPVPERDYVRTPKEDIFAFEDTL 322 (356)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCcCCCCCCcCCCHHHHHHHHHHH
Confidence 347889999998877542 234444333 4566666666543 3456677788876421 3456668
Q ss_pred HHcCCeEEEeccCCC
Q 035739 220 KAKGIIVTAYSPLGA 234 (335)
Q Consensus 220 ~~~gi~v~a~~pl~~ 234 (335)
+++|+.+......+.
T Consensus 323 ~~~gi~v~ir~~~g~ 337 (356)
T PRK14455 323 KKNGVNCTIRREHGT 337 (356)
T ss_pred HHCCCcEEEeCCCCc
Confidence 888998887766543
No 215
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=25.79 E-value=8.8e+02 Score=27.18 Aligned_cols=90 Identities=11% Similarity=-0.038 Sum_probs=59.1
Q ss_pred HhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-cCCc--cEEEecCccHHHHHHHHHhcCCCC
Q 035739 123 ALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQM-LGLT--KSIGLSNFSRKKIETILTFATIPP 199 (335)
Q Consensus 123 ~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~-~Gki--r~iGvs~~~~~~l~~~~~~~~~~~ 199 (335)
+-|-+.||+=.=. + ..+.++.+..+..+.+ .-.+ --|-+-+++++.++.+++...-.+
T Consensus 379 e~GA~iIDVn~~~-~------------------~vd~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~v~eaaLk~~~G~~ 439 (1178)
T TIGR02082 379 ENGAQILDINVDY-G------------------MLDGVAAMKRFLNLLASEPDISTVPLMLDSSEWAVLEAGLKCIQGKC 439 (1178)
T ss_pred HCCCCEEEECCCC-C------------------CCCHHHHHHHHHHHHHhccCCCCCeEEEeCCcHHHHHHHHHhcCCCC
Confidence 5678899987421 1 1223444444444444 3212 248889999999999999876566
Q ss_pred ccccCCCCcc-cccHHHHHHHHHcCCeEEEecc
Q 035739 200 SINQVEMHPV-WQQRKLIEFCKAKGIIVTAYSP 231 (335)
Q Consensus 200 ~~~q~~~~~~-~~~~~~l~~~~~~gi~v~a~~p 231 (335)
.+|-+..-.. .+-.++++.|+++|..++++.-
T Consensus 440 IINsIs~~~g~~~~~~~~~l~~~yga~vV~m~~ 472 (1178)
T TIGR02082 440 IVNSISLKDGEERFIETAKLIKEYGAAVVVMAF 472 (1178)
T ss_pred EEEeCCCCCCCccHHHHHHHHHHhCCCEEEEec
Confidence 7776554322 1225799999999999999854
No 216
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=25.77 E-value=6e+02 Score=24.41 Aligned_cols=149 Identities=17% Similarity=0.198 Sum_probs=88.0
Q ss_pred ChHHHHHHHHHHHHcCCC-EeeCCCCcCCHHHHHHHHHHHHHcCCCCCCCceEE---eeccC--CCCCChhhHHHHHHHH
Q 035739 47 DTDALKLVVLEAIKLGYR-HFDTAAMYGTEKALGEAIAEALRLGLVSSREQLFI---TSKLW--CQNAHRDHVIPALKKS 120 (335)
Q Consensus 47 ~~~~~~~~l~~A~~~Gin-~~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~~~i---~tK~~--~~~~~~~~i~~~~e~s 120 (335)
+.++-.+-++-|.+.|.. ..|-+ ..|.-..+.+++-+. +.+ +-..|=| ..|+. ..+.+.+.+...+++.
T Consensus 76 ~i~~EveK~~~A~~~GADtvMDLS-tGgdl~eiR~~ii~~--s~v--PvGTVPIYqA~~~~~~~~~~~t~d~~~~~v~~q 150 (432)
T COG0422 76 DIDEEVEKAVWAIKWGADTVMDLS-TGGDLHEIREWIIRN--SPV--PVGTVPIYQALEEVNGKVEDLTEDDFFDTVEKQ 150 (432)
T ss_pred CHHHHHHHHHHHHHhCcceeEecc-cCCCHHHHHHHHHhc--CCC--CcCCchHHHHHHHHhcchhhCCHHHHHHHHHHH
Confidence 555556788999999965 45665 445544444444321 011 1111100 00111 2355666777777766
Q ss_pred HHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCccHHHHHHHHHhcCCCCc
Q 035739 121 LSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSRKKIETILTFATIPPS 200 (335)
Q Consensus 121 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~ 200 (335)
.+ +-+|.+.+|.- =.++.++.+++.|++ .|+-+-...-+....-...
T Consensus 151 a~----~GVdfmTIHaG-----------------------V~~~~~~~~~~~~R~--~giVSRGGsi~a~Wml~~~---- 197 (432)
T COG0422 151 AE----QGVDFMTIHAG-----------------------VLLEYVPRTKRSGRV--TGIVSRGGSIMAAWMLHNH---- 197 (432)
T ss_pred HH----hCCcEEEeehh-----------------------hhHHHHHHHHhcCce--eeeeccchHHHHHHHHHcC----
Confidence 54 45677999953 256788899998886 7877777666555433322
Q ss_pred cccCCCCccccc-HHHHHHHHHcCCeEEEeccCCCCCCc
Q 035739 201 INQVEMHPVWQQ-RKLIEFCKAKGIIVTAYSPLGAVGKI 238 (335)
Q Consensus 201 ~~q~~~~~~~~~-~~~l~~~~~~gi~v~a~~pl~~~G~l 238 (335)
.=||+..+ .++++.|+++++.+----.+.. |-+
T Consensus 198 ----~ENply~~fd~lleI~k~yDvtlSLGDglRP-G~i 231 (432)
T COG0422 198 ----KENPLYEHFDELLEIFKEYDVTLSLGDGLRP-GCI 231 (432)
T ss_pred ----CcCchhhhHHHHHHHHHHhCeeeeccCCCCC-Ccc
Confidence 23455554 7899999999998866555544 443
No 217
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.75 E-value=2e+02 Score=24.99 Aligned_cols=60 Identities=15% Similarity=0.074 Sum_probs=38.0
Q ss_pred HHHHHHHHHHcCC---ccEEEecCcc-HHHHHHHHHhcCCCCccccCCCCcccccHHHHHHHHHcCCeEEE
Q 035739 162 VWEAMEESQMLGL---TKSIGLSNFS-RKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTA 228 (335)
Q Consensus 162 ~~~~L~~l~~~Gk---ir~iGvs~~~-~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~v~a 228 (335)
..+.+++++++-. =-.||..+.. .++++++++..- .+.+ +| .-..+++++|+++||.++.
T Consensus 51 a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA-~Fiv-----sP-~~~~~v~~~~~~~~i~~iP 114 (213)
T PRK06552 51 ASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGA-QFIV-----SP-SFNRETAKICNLYQIPYLP 114 (213)
T ss_pred HHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCC-CEEE-----CC-CCCHHHHHHHHHcCCCEEC
Confidence 4556666665421 1258888775 777887777432 2222 22 1237899999999998886
No 218
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=25.64 E-value=6.2e+02 Score=24.52 Aligned_cols=133 Identities=14% Similarity=0.132 Sum_probs=67.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCccEEEecC--ccH-------HHHHHHHHhc-CCCC--ccccCCCCcccccHHHHH
Q 035739 150 PKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSN--FSR-------KKIETILTFA-TIPP--SINQVEMHPVWQQRKLIE 217 (335)
Q Consensus 150 ~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~--~~~-------~~l~~~~~~~-~~~~--~~~q~~~~~~~~~~~~l~ 217 (335)
....+...+.+++++.++.+.+.| ++.|-+.. +.. ..+.++++.. ..+. .+.....++..-..++++
T Consensus 168 ~~g~~rsr~~e~V~~Ei~~l~~~g-~~eI~l~d~~~~~y~~~~~~~~~~~Ll~~l~~~~g~~~i~~~~~~p~~l~~ell~ 246 (437)
T PRK14331 168 TRGKERSRRLGSILDEVQWLVDDG-VKEIHLIGQNVTAYGKDIGDVPFSELLYAVAEIDGVERIRFTTGHPRDLDEDIIK 246 (437)
T ss_pred CCCCcccCCHHHHHHHHHHHHHCC-CeEEEEeeeccccccCCCCCCCHHHHHHHHhcCCCccEEEEeccCcccCCHHHHH
Confidence 333445667899999999999987 66666542 111 1233443321 1110 111111233334578888
Q ss_pred HHHHcC--CeEEEeccCCCCCCcCCCCccCChHHHHHHHHHhCCCHHHHHHHHHhhc--C----CEEEeCC--CCHHHHH
Q 035739 218 FCKAKG--IIVTAYSPLGAVGKIYGSNQVLENEALKEIAKARGKTVAQVSLRWIVEQ--G----ATVVIKS--LNLERMK 287 (335)
Q Consensus 218 ~~~~~g--i~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~g~s~~q~al~~~l~~--~----~~vi~g~--~~~~~l~ 287 (335)
..++.+ ...+.. ++-+ | ..+.++.+.+.+...-..-+++.+... + ...|+|. .+.++++
T Consensus 247 ~~~~~~~~~~~l~i-giqS-g---------sd~vLk~m~R~~t~~~~~~~v~~lr~~~~gi~i~~d~IvG~PgET~ed~~ 315 (437)
T PRK14331 247 AMADIPQVCEHLHL-PFQA-G---------SDRILKLMDRGYTKEEYLEKIELLKEYIPDITFSTDIIVGFPTETEEDFE 315 (437)
T ss_pred HHHcCCccCCceec-cccc-C---------ChHHHHHcCCCCCHHHHHHHHHHHHHhCCCCEEecCEEEECCCCCHHHHH
Confidence 888764 332222 2222 1 234455544433222223345555544 3 3467773 4677777
Q ss_pred Hhhcccc
Q 035739 288 QNLGIFD 294 (335)
Q Consensus 288 enl~a~~ 294 (335)
+.++.+.
T Consensus 316 ~tl~~l~ 322 (437)
T PRK14331 316 ETLDVLK 322 (437)
T ss_pred HHHHHHH
Confidence 7776643
No 219
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=25.64 E-value=2.3e+02 Score=25.85 Aligned_cols=67 Identities=24% Similarity=0.288 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCccHHHHHH
Q 035739 111 DHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSRKKIET 190 (335)
Q Consensus 111 ~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~ 190 (335)
..+++.+.-.+.-++ ..+++.|..|...-+ +....++++.|.++.++|. +.|=+|+|..+.++.
T Consensus 139 ~G~kqrl~ia~aL~~--~P~lliLDEPt~GLD-------------p~~~~~~~~~l~~l~~~g~-~tvlissH~l~e~~~ 202 (293)
T COG1131 139 GGMKQRLSIALALLH--DPELLILDEPTSGLD-------------PESRREIWELLRELAKEGG-VTILLSTHILEEAEE 202 (293)
T ss_pred HHHHHHHHHHHHHhc--CCCEEEECCCCcCCC-------------HHHHHHHHHHHHHHHhCCC-cEEEEeCCcHHHHHH
Confidence 456666666666665 569999999876433 3346789999999999996 568899999888887
Q ss_pred HHH
Q 035739 191 ILT 193 (335)
Q Consensus 191 ~~~ 193 (335)
+.+
T Consensus 203 ~~d 205 (293)
T COG1131 203 LCD 205 (293)
T ss_pred hCC
Confidence 744
No 220
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=25.52 E-value=5.2e+02 Score=24.96 Aligned_cols=134 Identities=13% Similarity=0.175 Sum_probs=67.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEec--Ccc--------HHHHHHHHHhcC-CCCccccCCC---CcccccH
Q 035739 148 PEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLS--NFS--------RKKIETILTFAT-IPPSINQVEM---HPVWQQR 213 (335)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs--~~~--------~~~l~~~~~~~~-~~~~~~q~~~---~~~~~~~ 213 (335)
+.........+.+++.+.++.|.+.| ++.|-+. |++ ...+.++++... ++ ....+.+ ++..-..
T Consensus 144 p~~rG~~rsrs~e~Iv~Ei~~l~~~G-~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~-~~~~ir~~~~~p~~i~~ 221 (418)
T PRK14336 144 PYRRGREKSRSIAEIGCEVAELVRRG-SREVVLLGQNVDSYGHDLPEKPCLADLLSALHDIP-GLLRIRFLTSHPKDISQ 221 (418)
T ss_pred cccCCCCccCCHHHHHHHHHHHHHCC-CeEEEEEecCccccccCCCCcccHHHHHHHHHhcC-CccEEEEeccChhhcCH
Confidence 44444556777999999999999987 4555433 211 113444443221 11 1111222 2222236
Q ss_pred HHHHHHHHcCCeE-EEeccCCCCCCcCCCCccCChHHHHHHHHHhCCCHHHHHHHHHhhc--C----CEEEeCC--CCHH
Q 035739 214 KLIEFCKAKGIIV-TAYSPLGAVGKIYGSNQVLENEALKEIAKARGKTVAQVSLRWIVEQ--G----ATVVIKS--LNLE 284 (335)
Q Consensus 214 ~~l~~~~~~gi~v-~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~g~s~~q~al~~~l~~--~----~~vi~g~--~~~~ 284 (335)
++++..++.+-++ ..+-++-+ ...+.++.+.+.+...-..-++..+... + +..|+|. .+.+
T Consensus 222 ell~~l~~~~~~~~~l~lglQS----------gsd~vLk~M~R~~~~~~~~~~i~~lr~~~pgi~i~~d~IvGfPGET~e 291 (418)
T PRK14336 222 KLIDAMAHLPKVCRSLSLPVQA----------GDDTILAAMRRGYTNQQYRELVERLKTAMPDISLQTDLIVGFPSETEE 291 (418)
T ss_pred HHHHHHHhcCccCCceecCCCc----------CCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEEEEEEEEECCCCCHH
Confidence 7888887754211 11112211 1345566555444333333455555554 3 3567773 4677
Q ss_pred HHHHhhccc
Q 035739 285 RMKQNLGIF 293 (335)
Q Consensus 285 ~l~enl~a~ 293 (335)
++++.++.+
T Consensus 292 df~~tl~fi 300 (418)
T PRK14336 292 QFNQSYKLM 300 (418)
T ss_pred HHHHHHHHH
Confidence 777666643
No 221
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=25.48 E-value=6.5e+02 Score=24.69 Aligned_cols=116 Identities=16% Similarity=0.043 Sum_probs=63.4
Q ss_pred CCCcCCHHHHHHHHHHHHHcCCCCCC-CceEEeeccCCCCCChhhHHHHHHHHHHHhC---CC--ccceEEeecCCCCCC
Q 035739 69 AAMYGTEKALGEAIAEALRLGLVSSR-EQLFITSKLWCQNAHRDHVIPALKKSLSALQ---ME--YLDLYLVHWPISSKP 142 (335)
Q Consensus 69 A~~Ygse~~lG~~l~~~~~~g~~~~R-~~~~i~tK~~~~~~~~~~i~~~~e~sL~~Lg---~d--~iDl~~lH~p~~~~~ 142 (335)
.-.||.++.|-++|++..+.. ++ +=++|.|=+...-. -+.+..-+++.-++++ .. .+.++.+|.|.+...
T Consensus 71 d~VfGg~~~L~~ai~~~~~~~---~~p~~i~v~ttc~~eii-GDDi~~v~~~~~~~~~~~~~p~~~~~ii~v~tpgF~gs 146 (461)
T TIGR02931 71 GAVFGALDRVEEAVDVLLTRY---PDVKVVPIITTCSTEII-GDDVDGLISKLNEELLKEKFPDREVHLIPIHTPSFVGS 146 (461)
T ss_pred ceEECcHHHHHHHHHHHHHhc---CCCCEEEEECCchHHhh-hcCHHHHHHHHHhhhcccccCCCCCeEEEeeCCCCCCc
Confidence 346888888899998865432 33 33556665533211 2345555544444442 11 357899998876432
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHH-HHHH----cCCccEEEecCc--cHHHHHHHHHhcCCCCc
Q 035739 143 GELGFPEPKEDLLPMDYRGVWEAME-ESQM----LGLTKSIGLSNF--SRKKIETILTFATIPPS 200 (335)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~L~-~l~~----~Gkir~iGvs~~--~~~~l~~~~~~~~~~~~ 200 (335)
. ..-...++++|- .+.. +++|--||.... +.+.+.++++..++.+.
T Consensus 147 ~------------~~Gy~~a~~ali~~~~~~~~~~~~VNlig~~~~~~D~~elk~lL~~~Gl~v~ 199 (461)
T TIGR02931 147 M------------ITGYDVAVHDFVKHFAKKDKPNDKINLITGWVNPGDVKELKHLLEEMDIEAN 199 (461)
T ss_pred H------------HHHHHHHHHHHHHHHccCCCCCCcEEEECCCCChhhHHHHHHHHHHcCCceE
Confidence 0 011233343333 2222 466878885432 45678888888876543
No 222
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=25.44 E-value=4.1e+02 Score=25.65 Aligned_cols=42 Identities=19% Similarity=0.131 Sum_probs=28.6
Q ss_pred HHHHHHHHHHh---CCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC
Q 035739 114 IPALKKSLSAL---QMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLG 173 (335)
Q Consensus 114 ~~~~e~sL~~L---g~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G 173 (335)
.+.+++..+.| +.+.+|+++|-+| ....+|+.+..+-|+.++
T Consensus 272 ~~dl~~~~~~l~~~~~~~~D~V~lGcP------------------H~S~~El~~ia~ll~gr~ 316 (400)
T PF04412_consen 272 DADLEEVYEELNTAGDEKVDLVALGCP------------------HLSLEELREIAELLEGRK 316 (400)
T ss_pred HHHHHHHHHHhccCCCCCCCEEEECCC------------------CCCHHHHHHHHHHHhCCC
Confidence 45566666777 5679999999999 455767666555555444
No 223
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.28 E-value=3.7e+02 Score=25.58 Aligned_cols=78 Identities=17% Similarity=0.177 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHH-HHcC---CccEEEecC--ccHHHHHHHHHhcC-CCCccccCCCCccccc----------HHHHHHH
Q 035739 157 MDYRGVWEAMEES-QMLG---LTKSIGLSN--FSRKKIETILTFAT-IPPSINQVEMHPVWQQ----------RKLIEFC 219 (335)
Q Consensus 157 ~~~~~~~~~L~~l-~~~G---kir~iGvs~--~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~----------~~~l~~~ 219 (335)
..++++++++.+. ++.| +|+++=+.. .+.+++.++++... ....++-++||++... ....+..
T Consensus 259 ~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn~~~~~~~~~ps~e~i~~F~~~L 338 (368)
T PRK14456 259 YPLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYNSIVNIKFEPVCSSTRERFRDRL 338 (368)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeeccCCCCCCCCCCHHHHHHHHHHH
Confidence 4578889988864 4445 244444443 34556666666543 3445677777776431 3456778
Q ss_pred HHcCCeEEEeccCCC
Q 035739 220 KAKGIIVTAYSPLGA 234 (335)
Q Consensus 220 ~~~gi~v~a~~pl~~ 234 (335)
+++|+.+......+.
T Consensus 339 ~~~Gi~vtvR~~~G~ 353 (368)
T PRK14456 339 LDAGLQVTVRKSYGT 353 (368)
T ss_pred HHCCCcEEeeCCCCc
Confidence 888998888776654
No 224
>PRK01732 rnpA ribonuclease P; Reviewed
Probab=25.27 E-value=3.2e+02 Score=21.09 Aligned_cols=65 Identities=17% Similarity=0.182 Sum_probs=42.7
Q ss_pred CCCceEEeeccCCCCCChhhHHHHHHHHHHHhC--CCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 035739 93 SREQLFITSKLWCQNAHRDHVIPALKKSLSALQ--MEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQ 170 (335)
Q Consensus 93 ~R~~~~i~tK~~~~~~~~~~i~~~~e~sL~~Lg--~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 170 (335)
+|=-+.|+-|....-..+..+++.+.++.+.+. +...|++++-.+... ..+..++.+.|..+.
T Consensus 45 ~R~G~~VsKK~~g~AV~RNriKR~lRe~~R~~~~~l~~~diVviar~~~~---------------~~~~~~l~~~l~~ll 109 (114)
T PRK01732 45 PRLGLTVAKKNVKRAHERNRIKRLTRESFRLHQHELPAMDFVVIAKKGVA---------------DLDNRELFELLEKLW 109 (114)
T ss_pred cEEEEEEEcccCcchhHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCCCcc---------------cCCHHHHHHHHHHHH
Confidence 455566777643334456778888888877554 245699999877432 355778888887775
Q ss_pred Hc
Q 035739 171 ML 172 (335)
Q Consensus 171 ~~ 172 (335)
+.
T Consensus 110 ~k 111 (114)
T PRK01732 110 RR 111 (114)
T ss_pred HH
Confidence 43
No 225
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=25.27 E-value=5.8e+02 Score=24.05 Aligned_cols=123 Identities=13% Similarity=0.088 Sum_probs=60.2
Q ss_pred HHHHHHHHcCCCEeeCCCCcCC------------HHHHHHHHHHHHHcCCCCCCCceEEeeccCCCCCChhhHHHHHHHH
Q 035739 53 LVVLEAIKLGYRHFDTAAMYGT------------EKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKS 120 (335)
Q Consensus 53 ~~l~~A~~~Gin~~DtA~~Ygs------------e~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~~e~s 120 (335)
+.++..-++|+|.+..+-.-++ .+.+-++++..-+.|+ +.+-+--=++.+..+.+.+.+.++..
T Consensus 109 e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~~~g~----~~v~~dli~GlPgqt~~~~~~tl~~~ 184 (375)
T PRK05628 109 EFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAGF----EHVNLDLIYGTPGESDDDWRASLDAA 184 (375)
T ss_pred HHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCC----CcEEEEEeccCCCCCHHHHHHHHHHH
Confidence 3444455678888865544332 2223344443322232 12222222244566677887777755
Q ss_pred HHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCC---HHHHHHHH-HHHHHcCCccEEEecCcc
Q 035739 121 LSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMD---YRGVWEAM-EESQMLGLTKSIGLSNFS 184 (335)
Q Consensus 121 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L-~~l~~~Gkir~iGvs~~~ 184 (335)
+ +|+.+++.+|.+.- .+.++-... .........+ ..+.+..+ +.|.+.|. .++++|+|.
T Consensus 185 ~-~l~~~~i~~y~l~~-~~gT~l~~~--~~~g~~~~~~~~~~~~~~~~~~~~l~~~G~-~~ye~s~fa 247 (375)
T PRK05628 185 L-EAGVDHVSAYALIV-EDGTALARR--VRRGELPAPDDDVLADRYELADARLSAAGF-DWYEVSNWA 247 (375)
T ss_pred H-hcCCCEEEeeeeec-CCCChHHHH--hhcCCCCCCChHHHHHHHHHHHHHHHHcCC-Ceeeecccc
Confidence 4 59999999988763 222210000 0000011111 22333333 44566676 468899887
No 226
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=25.05 E-value=4.2e+02 Score=26.45 Aligned_cols=98 Identities=13% Similarity=0.191 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC----------CccEEEec
Q 035739 112 HVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLG----------LTKSIGLS 181 (335)
Q Consensus 112 ~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G----------kir~iGvs 181 (335)
.-+..+-+.|.++|+++|.+-+ |.. ..+-+++++.+.+.+ ..+-.+++
T Consensus 106 eeKi~Ia~~L~~~GVd~IEvG~---Pa~-------------------s~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~ 163 (503)
T PLN03228 106 PQKLEIARQLAKLRVDIMEVGF---PGS-------------------SEEEFEAVKTIAKTVGNEVDEETGYVPVICGIA 163 (503)
T ss_pred HHHHHHHHHHHHcCCCEEEEeC---CCC-------------------CHHHHHHHHHHHHhcccccccccccceEEeeec
Confidence 3455667779999999888744 422 122334444444332 13445677
Q ss_pred CccHHHHHHHHHhc---CCCCccccCCCCccccc--------------HHHHHHHHHcCCeEEEecc
Q 035739 182 NFSRKKIETILTFA---TIPPSINQVEMHPVWQQ--------------RKLIEFCKAKGIIVTAYSP 231 (335)
Q Consensus 182 ~~~~~~l~~~~~~~---~~~~~~~q~~~~~~~~~--------------~~~l~~~~~~gi~v~a~~p 231 (335)
......++.+++.. +.+-+.+-+..+....+ .+.+.+++++|...+.+++
T Consensus 164 R~~~~dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~ 230 (503)
T PLN03228 164 RCKKRDIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGC 230 (503)
T ss_pred ccCHhhHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEecc
Confidence 77777788877752 11111122222222211 4578899999986555544
No 227
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=25.01 E-value=3.5e+02 Score=23.69 Aligned_cols=73 Identities=10% Similarity=0.027 Sum_probs=46.9
Q ss_pred CChHHHHHHHHHHHHcCCCEeeCCCCcC----CHHHHHHHHHHHHHcCCCCCCCceEEeeccCCCCCChhhHHHHHHHHH
Q 035739 46 SDTDALKLVVLEAIKLGYRHFDTAAMYG----TEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSL 121 (335)
Q Consensus 46 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg----se~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~~e~sL 121 (335)
++.++..++.+.+.+.|..|+=|+..|+ +.+.+.. +++. -+++ +..|....-.+.+...+-++.--
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~-m~~~-------~~~~--~~IKasGGIrt~~~a~~~i~aGA 202 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKL-MRET-------VGPR--VGVKASGGIRTLEDALAMIEAGA 202 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHH-HHHH-------hCCC--ceEEeeCCcCCHHHHHHHHHcCc
Confidence 3678889999999999999999999985 4444443 3332 1222 23343222344577777777666
Q ss_pred HHhCCCc
Q 035739 122 SALQMEY 128 (335)
Q Consensus 122 ~~Lg~d~ 128 (335)
.|+|+.+
T Consensus 203 ~riGtS~ 209 (221)
T PRK00507 203 TRLGTSA 209 (221)
T ss_pred ceEccCc
Confidence 7777643
No 228
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=24.92 E-value=6e+02 Score=24.97 Aligned_cols=100 Identities=14% Similarity=0.143 Sum_probs=48.6
Q ss_pred HHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHc-CCccE---------EEecCcc
Q 035739 115 PALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQML-GLTKS---------IGLSNFS 184 (335)
Q Consensus 115 ~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-Gkir~---------iGvs~~~ 184 (335)
..+-+.|.++|++.|++. .... ++...... .+.-|+.++.+++. ..++. +|.+++.
T Consensus 29 l~ia~~Ld~~Gv~~IE~~----ggat------f~~~~~f~----~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~p 94 (448)
T PRK12331 29 LPILEKLDNAGYHSLEMW----GGAT------FDACLRFL----NEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYA 94 (448)
T ss_pred HHHHHHHHHcCCCEEEec----CCcc------chhhhccC----CCCHHHHHHHHHHhCCCCEEEEEeccccccccccCc
Confidence 345556888899998883 1100 00000000 11246666666665 22332 4565654
Q ss_pred HHHH----HHHHHhcCCCCccccCCCCcccccHHHHHHHHHcCCeEEEe
Q 035739 185 RKKI----ETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAY 229 (335)
Q Consensus 185 ~~~l----~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~v~a~ 229 (335)
.+.+ +.+++ ++++..-+-...|-...-.+.+++++++|..+.+.
T Consensus 95 ddvv~~~v~~A~~-~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~ 142 (448)
T PRK12331 95 DDVVESFVQKSVE-NGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVA 142 (448)
T ss_pred hhhHHHHHHHHHH-CCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEE
Confidence 3333 33333 33332222223333332356788999999866543
No 229
>COG1795 Formaldehyde-activating enzyme nesessary for methanogenesis [Energy production and conversion]
Probab=24.91 E-value=1.2e+02 Score=24.81 Aligned_cols=33 Identities=18% Similarity=0.639 Sum_probs=25.6
Q ss_pred CcC-CHHHHHHHHHHHHHcCCCCCC---CceEEeeccC
Q 035739 71 MYG-TEKALGEAIAEALRLGLVSSR---EQLFITSKLW 104 (335)
Q Consensus 71 ~Yg-se~~lG~~l~~~~~~g~~~~R---~~~~i~tK~~ 104 (335)
.+| ++..+.++..+.+++|++ +| ++++|++-+|
T Consensus 79 ~fGpaQ~AVAkAVadsveegii-p~e~~dd~vvi~svf 115 (170)
T COG1795 79 IFGPAQAAVAKAVADSVEEGII-PREQADDVVVIVSVF 115 (170)
T ss_pred hhcHHHHHHHHHHHHHHHhcCC-ChhHhcCEEEEEEeE
Confidence 345 688899999999999987 66 4577777775
No 230
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=24.91 E-value=6.4e+02 Score=24.57 Aligned_cols=74 Identities=7% Similarity=0.082 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHc----CCccEEEec-----CccHHHHHHHHHhcC--CCC---ccccCCCCcccccHHHHHHHHHcCCe
Q 035739 160 RGVWEAMEESQML----GLTKSIGLS-----NFSRKKIETILTFAT--IPP---SINQVEMHPVWQQRKLIEFCKAKGII 225 (335)
Q Consensus 160 ~~~~~~L~~l~~~----Gkir~iGvs-----~~~~~~l~~~~~~~~--~~~---~~~q~~~~~~~~~~~~l~~~~~~gi~ 225 (335)
+.+.+.++.+.+. -.|+.|=+. -.+.+++.++++... ++. .-+-++.|+..-..+.++.+++.|+.
T Consensus 84 ~~L~~Ei~~~~~~~~~~~~v~~i~~gGGtPs~l~~~~l~~ll~~l~~~~~~~~~~e~tie~np~~lt~e~l~~l~~aG~~ 163 (453)
T PRK09249 84 DALEKEIALVAALLGPGRPVSQLHWGGGTPTFLSPEQLRRLMALLREHFNFAPDAEISIEIDPRELDLEMLDALRELGFN 163 (453)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEECCcccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEecCCcCCHHHHHHHHHcCCC
Confidence 3344555544332 246666442 234677777766542 111 12334455544457899999999987
Q ss_pred EEEeccCC
Q 035739 226 VTAYSPLG 233 (335)
Q Consensus 226 v~a~~pl~ 233 (335)
-+..+.=+
T Consensus 164 risiGvqS 171 (453)
T PRK09249 164 RLSLGVQD 171 (453)
T ss_pred EEEECCCC
Confidence 77665443
No 231
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=24.84 E-value=2.5e+02 Score=21.96 Aligned_cols=65 Identities=9% Similarity=0.107 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCccHHHHHHHHHhcCCCCccccCCCCcccccHHHHHHHHHcCCeEEEe
Q 035739 159 YRGVWEAMEESQMLGLTKSIGLSNFSRKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAY 229 (335)
Q Consensus 159 ~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~v~a~ 229 (335)
.+.+...+....+.|+|. .+..+...+++.....++++--..+|..-...+-..|+++||+++-.
T Consensus 12 ~~k~l~~l~~a~~~~ki~------~G~~e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V 76 (116)
T COG1358 12 EQKALSLLGKASRAGKLK------KGTNEVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYV 76 (116)
T ss_pred HHHHHHHHHHHHhcCCch------hhHHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 556788888888889775 34477778888776666666666665555566788999999988764
No 232
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=24.76 E-value=5.2e+02 Score=23.30 Aligned_cols=120 Identities=9% Similarity=0.031 Sum_probs=63.4
Q ss_pred CChHHHHHHHHHHHHcCCCEeeCCCC------cC----C-HHHHHHHHHHHHHcCCCCCCCceEEeecc---CCCCCChh
Q 035739 46 SDTDALKLVVLEAIKLGYRHFDTAAM------YG----T-EKALGEAIAEALRLGLVSSREQLFITSKL---WCQNAHRD 111 (335)
Q Consensus 46 ~~~~~~~~~l~~A~~~Gin~~DtA~~------Yg----s-e~~lG~~l~~~~~~g~~~~R~~~~i~tK~---~~~~~~~~ 111 (335)
.+.++..++.....+.||..|+.... ++ . .+.+. .+++. . ++-.+...+.. .....-|.
T Consensus 18 ~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~-~~~~~---~---~~~~l~~~~r~~~~~~~~~~p~ 90 (275)
T cd07937 18 MRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLR-ELRKA---M---PNTPLQMLLRGQNLVGYRHYPD 90 (275)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHH-HHHHh---C---CCCceehhcccccccCccCCCc
Confidence 36677778888888999999998752 22 2 22332 23322 1 33344333332 11111234
Q ss_pred hHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEe-----cCccHH
Q 035739 112 HVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGL-----SNFSRK 186 (335)
Q Consensus 112 ~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGv-----s~~~~~ 186 (335)
.+.+..-+.....|++.|-+ -.|. .+.+.+.+.++.+|+.|+.-..++ +.++++
T Consensus 91 ~~~~~di~~~~~~g~~~iri---~~~~------------------~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~ 149 (275)
T cd07937 91 DVVELFVEKAAKNGIDIFRI---FDAL------------------NDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLE 149 (275)
T ss_pred HHHHHHHHHHHHcCCCEEEE---eecC------------------ChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHH
Confidence 44444333344556555433 2221 126678888899999997544444 345556
Q ss_pred HHHHHHH
Q 035739 187 KIETILT 193 (335)
Q Consensus 187 ~l~~~~~ 193 (335)
.+.++++
T Consensus 150 ~~~~~~~ 156 (275)
T cd07937 150 YYVKLAK 156 (275)
T ss_pred HHHHHHH
Confidence 5555544
No 233
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.76 E-value=1.9e+02 Score=22.14 Aligned_cols=67 Identities=18% Similarity=0.195 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHcCCCEeeCCCCcC--CHHHHHHHHHHHHHcCCCCCCCceEEeecc-CC-----------------CCC
Q 035739 49 DALKLVVLEAIKLGYRHFDTAAMYG--TEKALGEAIAEALRLGLVSSREQLFITSKL-WC-----------------QNA 108 (335)
Q Consensus 49 ~~~~~~l~~A~~~Gin~~DtA~~Yg--se~~lG~~l~~~~~~g~~~~R~~~~i~tK~-~~-----------------~~~ 108 (335)
.-.....--.+++|.-|+-|-..|. .|.++---|-+ ..+++++++|+ |. .+-
T Consensus 20 a~LYsaYMpfl~nGglFVpTnk~y~iG~evfl~l~lld--------~pekl~vagkVaWitP~gt~sr~~GiGv~f~d~e 91 (117)
T COG3215 20 ALLYSAYMPFLENGGLFVPTNKVYSIGEEVFLLLELLD--------FPEKLPVAGKVAWITPVGTQSRPAGIGVQFTDGE 91 (117)
T ss_pred HHHHHHHhHHHhcCcEEcccCCccccchhhhhhhhhcC--------chhhccccceEEEEccCCCCCCCCceeeeccCCC
Confidence 3344444555799999999999997 55554444433 56689999998 21 111
Q ss_pred ChhhHHHHHHHHHHH
Q 035739 109 HRDHVIPALKKSLSA 123 (335)
Q Consensus 109 ~~~~i~~~~e~sL~~ 123 (335)
.-..++.++|.-|..
T Consensus 92 ~g~~vr~~IE~~Lg~ 106 (117)
T COG3215 92 NGLKVRNQIETLLGG 106 (117)
T ss_pred chhhHHHHHHHHHHh
Confidence 234788889887753
No 234
>PRK09082 methionine aminotransferase; Validated
Probab=24.72 E-value=5.9e+02 Score=23.90 Aligned_cols=60 Identities=13% Similarity=0.122 Sum_probs=32.1
Q ss_pred cCCccEEEec--C--ccHHHHHHHHHhcCCCCccccCCCCcccc------cHHHHHHHHHcCCeEEEeccC
Q 035739 172 LGLTKSIGLS--N--FSRKKIETILTFATIPPSINQVEMHPVWQ------QRKLIEFCKAKGIIVTAYSPL 232 (335)
Q Consensus 172 ~Gkir~iGvs--~--~~~~~l~~~~~~~~~~~~~~q~~~~~~~~------~~~~l~~~~~~gi~v~a~~pl 232 (335)
.+++..+-+. + .+.+.+++.+.. +.+..++..+.||.-. -.+++++|+++|+.++.-.++
T Consensus 136 g~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y 205 (386)
T PRK09082 136 GGRAVRVALQPPDFRVDWQRFAAAISP-RTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVY 205 (386)
T ss_pred CCEEEEEecCcccccCCHHHHHHhcCc-cceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhh
Confidence 3566566553 2 234555555432 2233333334455321 156789999999888764443
No 235
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=24.71 E-value=6.1e+02 Score=24.06 Aligned_cols=74 Identities=12% Similarity=0.171 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHcCCccEEEecCccHHHHHHHHHhcCCCCccccCCCCccccc---HHHHHHHHHcCCeEEEeccCCC
Q 035739 160 RGVWEAMEESQMLGLTKSIGLSNFSRKKIETILTFATIPPSINQVEMHPVWQQ---RKLIEFCKAKGIIVTAYSPLGA 234 (335)
Q Consensus 160 ~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~~l~~~~~~gi~v~a~~pl~~ 234 (335)
...+..+..+...+.++-.-+...+.+.++++++. +.+.+++..+-||.-.- .++.+.|+++|+.++.=..++.
T Consensus 101 ~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~-~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~ 177 (382)
T TIGR02080 101 GGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQ-KPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLS 177 (382)
T ss_pred HHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCc-CceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcc
Confidence 34555555555555555454545566777776642 23444555566665432 6788999999998887666543
No 236
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=24.60 E-value=3e+02 Score=26.80 Aligned_cols=70 Identities=9% Similarity=0.008 Sum_probs=42.6
Q ss_pred HHHHHHHHHcCCcc-----EEEecCccHHH---------HHHHHHhcCCCCccccCCCCcccccH-HHHHHHHHcCCeEE
Q 035739 163 WEAMEESQMLGLTK-----SIGLSNFSRKK---------IETILTFATIPPSINQVEMHPVWQQR-KLIEFCKAKGIIVT 227 (335)
Q Consensus 163 ~~~L~~l~~~Gkir-----~iGvs~~~~~~---------l~~~~~~~~~~~~~~q~~~~~~~~~~-~~l~~~~~~gi~v~ 227 (335)
++.|.+|.++|+|+ ++++....... +.+-+...+++-++.-..+..+.|.. -+....++.||.++
T Consensus 289 lD~LreLekEG~IG~L~~~fyst~G~gt~~~~a~~~g~eIa~~Lk~dgVDAVILTstCgtC~r~~a~m~keiE~~GiPvv 368 (431)
T TIGR01918 289 VDVLRDYEKEGKIGELHEYFYSTVGNGTTVAESKQFAKEFVVELKQGGVDAVILTSTUGTCTRCGATMVKEIERAGIPVV 368 (431)
T ss_pred HHHHHHHHHcCCcccccCeeEEcCCCCchHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEE
Confidence 68899999999996 55554443221 23333444555444433556666653 35567777888887
Q ss_pred EeccC
Q 035739 228 AYSPL 232 (335)
Q Consensus 228 a~~pl 232 (335)
.+..+
T Consensus 369 ~~~~~ 373 (431)
T TIGR01918 369 HMCTV 373 (431)
T ss_pred EEeec
Confidence 77553
No 237
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=24.46 E-value=5.4e+02 Score=24.25 Aligned_cols=75 Identities=15% Similarity=0.140 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHcC--CccEEEec--C---ccHHHHHHHHHhcC----CCCc-cccCCCCcccccHHHHHHHHHcCCeE
Q 035739 159 YRGVWEAMEESQMLG--LTKSIGLS--N---FSRKKIETILTFAT----IPPS-INQVEMHPVWQQRKLIEFCKAKGIIV 226 (335)
Q Consensus 159 ~~~~~~~L~~l~~~G--kir~iGvs--~---~~~~~l~~~~~~~~----~~~~-~~q~~~~~~~~~~~~l~~~~~~gi~v 226 (335)
.+.+.+.++.+.+.| .|+.|-+. + .+...+.++++... +... -+-++.+|-.-..+.++..++.|+.-
T Consensus 34 ~~~l~~Ei~~~~~~~~~~i~~i~~gGGtpt~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~G~~r 113 (377)
T PRK08599 34 LDALIKEMNTYAIRPFDKLKTIYIGGGTPTALSAEQLERLLTAIHRNLPLSGLEEFTFEANPGDLTKEKLQVLKDSGVNR 113 (377)
T ss_pred HHHHHHHHHHhhhcCCCceeEEEeCCCCcccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCE
Confidence 344555565444433 56655443 2 23566777665432 2111 12234455444578899999999876
Q ss_pred EEeccCC
Q 035739 227 TAYSPLG 233 (335)
Q Consensus 227 ~a~~pl~ 233 (335)
+..+.=+
T Consensus 114 vsiGvqS 120 (377)
T PRK08599 114 ISLGVQT 120 (377)
T ss_pred EEEeccc
Confidence 6655443
No 238
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=24.21 E-value=7.3e+02 Score=24.79 Aligned_cols=142 Identities=11% Similarity=0.076 Sum_probs=70.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHHhC-CCccceEEeecCCCCCCCCCCCCCC
Q 035739 72 YGTEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSALQ-MEYLDLYLVHWPISSKPGELGFPEP 150 (335)
Q Consensus 72 Ygse~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~~e~sL~~Lg-~d~iDl~~lH~p~~~~~~~~~~~~~ 150 (335)
+|.++.+-+.|++..+.- +.+=++|.|=+.+ +-|-..++...++++ -.-++++.+|.|.....
T Consensus 67 ~Gg~~kL~~~I~~~~~~~---~P~~I~V~tTC~~-----eiIGDDi~~v~~~~~~~~~~pVi~v~t~~f~g~-------- 130 (513)
T CHL00076 67 RGSQEKVVDNITRKDKEE---RPDLIVLTPTCTS-----SILQEDLQNFVDRASIESDSDVILADVNHYRVN-------- 130 (513)
T ss_pred cchHHHHHHHHHHHHHhc---CCCEEEECCCCch-----hhhhcCHHHHHHHhhcccCCCEEEeCCCCCccc--------
Confidence 467777777777653321 3444555555432 223333333333333 12368999999855321
Q ss_pred CCCCCCCCHHHHHHHHHH-H--------------HHcCCccEEEecC------ccHHHHHHHHHhcCCCCcccc------
Q 035739 151 KEDLLPMDYRGVWEAMEE-S--------------QMLGLTKSIGLSN------FSRKKIETILTFATIPPSINQ------ 203 (335)
Q Consensus 151 ~~~~~~~~~~~~~~~L~~-l--------------~~~Gkir~iGvs~------~~~~~l~~~~~~~~~~~~~~q------ 203 (335)
.+ ...+.+++++-+ + +..++|--||..+ .+...+.++++..++.+.++-
T Consensus 131 --~~--~g~~~~l~~lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn~v~~~g~sl 206 (513)
T CHL00076 131 --EL--QAADRTLEQIVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEINQIIPEGGSV 206 (513)
T ss_pred --HH--HHHHHHHHHHHHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEEEEECCCCCH
Confidence 00 001122222221 1 1346688888764 345668888887775432111
Q ss_pred --------CCCCccc-cc--HHHHHHHH-HcCCeEEEeccCC
Q 035739 204 --------VEMHPVW-QQ--RKLIEFCK-AKGIIVTAYSPLG 233 (335)
Q Consensus 204 --------~~~~~~~-~~--~~~l~~~~-~~gi~v~a~~pl~ 233 (335)
..+|+.. +. ..+-++.+ +.|++++...|++
T Consensus 207 ~di~~~~~A~~NIvl~~~~g~~~A~~Le~~fgiP~i~~~PiG 248 (513)
T CHL00076 207 EDLKNLPKAWFNIVPYREVGLMTAKYLEKEFGMPYISTTPMG 248 (513)
T ss_pred HHHHhcccCcEEEEechhhhHHHHHHHHHHhCCCeEeeccCC
Confidence 1122222 11 23444444 5699998877875
No 239
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=24.19 E-value=6.5e+02 Score=24.20 Aligned_cols=86 Identities=13% Similarity=0.150 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCCceEEeeccCCCC----------------CChhhHHHHHHHHHHHhC-CCccceEEee
Q 035739 73 GTEKALGEAIAEALRLGLVSSREQLFITSKLWCQN----------------AHRDHVIPALKKSLSALQ-MEYLDLYLVH 135 (335)
Q Consensus 73 gse~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~----------------~~~~~i~~~~e~sL~~Lg-~d~iDl~~lH 135 (335)
|+-++-+++|+.. . ++..|+|+.=.|... ++.+.=.-.++..|..|. ...=|+++||
T Consensus 105 GAL~~~A~fl~~~---~---~~~~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a~~~~vvLLH 178 (396)
T COG1448 105 GALRVAADFLARF---F---PDATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGMLADLKTAPEGSVVLLH 178 (396)
T ss_pred hHHHHHHHHHHHh---C---CCceEEeCCCCcHhHHHHHHhcCCceeeeeccccccccccHHHHHHHHHhCCCCCEEEEe
Confidence 3677778888875 3 677799988776421 111111133444444443 3466899998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-cCCcc
Q 035739 136 WPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQM-LGLTK 176 (335)
Q Consensus 136 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~-~Gkir 176 (335)
..-... +.- +. ..+.|..+.++.+ .|.|-
T Consensus 179 ~CcHNP--------TG~---D~-t~~qW~~l~~~~~~r~lip 208 (396)
T COG1448 179 GCCHNP--------TGI---DP-TEEQWQELADLIKERGLIP 208 (396)
T ss_pred cCCCCC--------CCC---CC-CHHHHHHHHHHHHHcCCee
Confidence 543221 111 12 4567777766654 45554
No 240
>COG4451 RbcS Ribulose bisphosphate carboxylase small subunit [Energy production and conversion]
Probab=24.16 E-value=3.6e+02 Score=21.25 Aligned_cols=67 Identities=15% Similarity=0.186 Sum_probs=43.3
Q ss_pred CCCCChhhHHHHHHHHHH---HhCCCccce------EEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHc---
Q 035739 105 CQNAHRDHVIPALKKSLS---ALQMEYLDL------YLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQML--- 172 (335)
Q Consensus 105 ~~~~~~~~i~~~~e~sL~---~Lg~d~iDl------~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~--- 172 (335)
.+..+-..+.+||+..|. ..|++|.|- ++.-|-.+ .+......+++.+|+++..+
T Consensus 16 lp~Ltd~qi~~QVrylL~QGykigvE~~d~rrprtgsWt~wg~p-------------~f~~~~~~evlaele~Cr~dhp~ 82 (127)
T COG4451 16 LPPLTDEQIAEQVRYLLSQGYKIGVEYVDDRRPRTGSWTMWGTP-------------MFGAKTAGEVLAELEACRADHPG 82 (127)
T ss_pred CCcCcHHHHHHHHHHHHhCCcccceeecccCCcccceeeecCCc-------------cccccchHHHHHHHHHHHHhCCC
Confidence 345666789999998886 356777664 12222110 01133467899999999887
Q ss_pred CCccEEEecCcc
Q 035739 173 GLTKSIGLSNFS 184 (335)
Q Consensus 173 Gkir~iGvs~~~ 184 (335)
-.||-+||-+-.
T Consensus 83 eYIRliGfDp~g 94 (127)
T COG4451 83 EYIRLIGFDPKG 94 (127)
T ss_pred CeEEEEEecCCC
Confidence 678888886654
No 241
>PRK07329 hypothetical protein; Provisional
Probab=24.12 E-value=5e+02 Score=22.89 Aligned_cols=74 Identities=14% Similarity=0.056 Sum_probs=40.4
Q ss_pred CCceEEeeccCCCCCChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHH----HHHHHH
Q 035739 94 REQLFITSKLWCQNAHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVW----EAMEES 169 (335)
Q Consensus 94 R~~~~i~tK~~~~~~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~----~~L~~l 169 (335)
+.+|++.--+.... . -...+++.|.+...||+ +.-+|+...... + ...+...+..+++ +.+.++
T Consensus 66 ~~~I~~GlE~~~~~---~-~~~~~~~~l~~~~~Dyv-IgSvH~~~~~~~----~---~~~~~~~~~~~~~~~Y~~~~~~~ 133 (246)
T PRK07329 66 GNRIKKGIEIGYFA---P-REDDILDFLANKDFDLK-LLSVHHNGVYDY----L---DDEVADMDKKELLQEYFEKMEEA 133 (246)
T ss_pred hhhceEEEEeCccc---c-cHHHHHHHhccCCCCeE-EEEEEEcCCCCC----c---cHHHhcCCHHHHHHHHHHHHHHH
Confidence 44555554443221 2 24556666777778888 888998632110 0 0111123344444 778888
Q ss_pred HHcC-CccEEE
Q 035739 170 QMLG-LTKSIG 179 (335)
Q Consensus 170 ~~~G-kir~iG 179 (335)
.+.+ .+..+|
T Consensus 134 v~~~~~fdvlg 144 (246)
T PRK07329 134 IGRVHDADVLA 144 (246)
T ss_pred HHccCCCCEee
Confidence 8876 766665
No 242
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=24.07 E-value=5e+02 Score=23.59 Aligned_cols=97 Identities=18% Similarity=0.162 Sum_probs=0.0
Q ss_pred CChhhHHHHHHHHHHHhCCCccceEEe-ecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC-------CccEEE
Q 035739 108 AHRDHVIPALKKSLSALQMEYLDLYLV-HWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLG-------LTKSIG 179 (335)
Q Consensus 108 ~~~~~i~~~~e~sL~~Lg~d~iDl~~l-H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-------kir~iG 179 (335)
++.+.-.+-++..+..+|+++|++-.. ..| +-++++.++.+.. +++.++
T Consensus 16 ~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~-----------------------~e~~av~~~~~~~~~~~~~~~~~~~a 72 (280)
T cd07945 16 FSPSEKLNIAKILLQELKVDRIEVASARVSE-----------------------GEFEAVQKIIDWAAEEGLLDRIEVLG 72 (280)
T ss_pred cCHHHHHHHHHHHHHHhCCCEEEecCCCCCH-----------------------HHHHHHHHHHHHhhhhccccCcEEEE
Q ss_pred ecCccHHHHHHHHHhcCCCCccccCCCCccccc--------------HHHHHHHHHcCCeEEEe
Q 035739 180 LSNFSRKKIETILTFATIPPSINQVEMHPVWQQ--------------RKLIEFCKAKGIIVTAY 229 (335)
Q Consensus 180 vs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--------------~~~l~~~~~~gi~v~a~ 229 (335)
+... ...++.+++ ++.+...+-++.|..+.+ .+++++|+++|+.+..+
T Consensus 73 ~~~~-~~~~~~A~~-~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~ 134 (280)
T cd07945 73 FVDG-DKSVDWIKS-AGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIY 134 (280)
T ss_pred ecCc-HHHHHHHHH-CCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEE
No 243
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=23.85 E-value=3.5e+02 Score=23.22 Aligned_cols=57 Identities=19% Similarity=0.479 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCCeEEEeccCCCCCCcCCCCccCChHHHHHHHHHhCCCHHHHHHHHHhhcC--CEEEeCCC--CHHHHHH
Q 035739 213 RKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLENEALKEIAKARGKTVAQVSLRWIVEQG--ATVVIKSL--NLERMKQ 288 (335)
Q Consensus 213 ~~~l~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~g~s~~q~al~~~l~~~--~~vi~g~~--~~~~l~e 288 (335)
.+.+++.+++++.++.+.+- + .-|=.++|++|++.++ ..+++|+. +.+|.-.
T Consensus 50 ~~~~~~~~~~~~~~~~~~~e-K-----------------------D~TD~e~Al~~~~~~~~~~i~i~Ga~GgR~DH~la 105 (203)
T TIGR01378 50 EEELDFYKKAGVKIIVFPPE-K-----------------------DTTDLELALKYALERGADEITILGATGGRLDHTLA 105 (203)
T ss_pred HHHHHHHHHcCCceEEcCCC-C-----------------------CCCHHHHHHHHHHHCCCCEEEEEcCCCCcHHHHHH
Confidence 56677777777777665333 1 2466789999999887 57777764 7899999
Q ss_pred hhccc
Q 035739 289 NLGIF 293 (335)
Q Consensus 289 nl~a~ 293 (335)
|+..+
T Consensus 106 ni~~L 110 (203)
T TIGR01378 106 NLNLL 110 (203)
T ss_pred HHHHH
Confidence 98765
No 244
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=23.82 E-value=2.4e+02 Score=24.34 Aligned_cols=67 Identities=12% Similarity=0.058 Sum_probs=40.5
Q ss_pred HHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEec-CccHHHHHHHHHhcCCC
Q 035739 120 SLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLS-NFSRKKIETILTFATIP 198 (335)
Q Consensus 120 sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs-~~~~~~l~~~~~~~~~~ 198 (335)
.+..+|.|++=+++...... ..+.+. ...+.+.. .+.++.+||. |-+++.+.++++..+
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR----------------~V~~~~-a~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~~~-- 75 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKR----------------HQTITQ-IKKLASAV-PNHIDKVCVVVNPDLTTIEHILSNTS-- 75 (207)
T ss_pred HHHHcCCCEEEEecCCCCcc----------------cCCHHH-HHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhCC--
Confidence 34569999998874332111 122332 23333322 2568889985 777888888888665
Q ss_pred CccccCCC
Q 035739 199 PSINQVEM 206 (335)
Q Consensus 199 ~~~~q~~~ 206 (335)
+.++|++-
T Consensus 76 ~d~vQLHG 83 (207)
T PRK13958 76 INTIQLHG 83 (207)
T ss_pred CCEEEECC
Confidence 46888764
No 245
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=23.78 E-value=5.8e+02 Score=23.52 Aligned_cols=106 Identities=16% Similarity=0.135 Sum_probs=57.8
Q ss_pred CCChHHHHHHHHHHHHcCCCEeeCCCCcCCHHHH----HHHHHHHHHcCCCCCCCceEEeeccCCCCCChhhHHHHHHHH
Q 035739 45 KSDTDALKLVVLEAIKLGYRHFDTAAMYGTEKAL----GEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKS 120 (335)
Q Consensus 45 ~~~~~~~~~~l~~A~~~Gin~~DtA~~Ygse~~l----G~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~~e~s 120 (335)
..+.+++.++++.+.+.|+..|.- .|-|..+ -+.++..-+.. .-.++.|+|-... +.+ .-+.
T Consensus 42 ~ls~eei~~~i~~~~~~gv~~V~l---tGGEPll~~~l~~li~~i~~~~---gi~~v~itTNG~l-------l~~-~~~~ 107 (334)
T TIGR02666 42 LLTFEEIERLVRAFVGLGVRKVRL---TGGEPLLRKDLVELVARLAALP---GIEDIALTTNGLL-------LAR-HAKD 107 (334)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEE---ECccccccCCHHHHHHHHHhcC---CCCeEEEEeCchh-------HHH-HHHH
Confidence 457889999999999999987764 3322222 23333221100 1226777775321 112 3345
Q ss_pred HHHhCCCccceEEeecCCCCCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHcCC
Q 035739 121 LSALQMEYLDLYLVHWPISSKPGELGFPEPKEDL--LPMDYRGVWEAMEESQMLGL 174 (335)
Q Consensus 121 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~L~~l~~~Gk 174 (335)
|++.|++++- +-++..++..- ... ....+..++++++.+++.|.
T Consensus 108 L~~~gl~~v~-ISld~~~~~~~---------~~i~~~~~~~~~vl~~i~~l~~~G~ 153 (334)
T TIGR02666 108 LKEAGLKRVN-VSLDSLDPERF---------AKITRRGGRLEQVLAGIDAALAAGL 153 (334)
T ss_pred HHHcCCCeEE-EecccCCHHHh---------heeCCCCCCHHHHHHHHHHHHHcCC
Confidence 6677765433 23444332110 011 02347889999999998875
No 246
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=23.69 E-value=3.3e+02 Score=25.58 Aligned_cols=59 Identities=15% Similarity=0.222 Sum_probs=39.2
Q ss_pred ccEEEecCccHHHHHHHHHhcCCCCccccCCCCccccc---HHHHHHHHHcCCeEEEeccCCC
Q 035739 175 TKSIGLSNFSRKKIETILTFATIPPSINQVEMHPVWQQ---RKLIEFCKAKGIIVTAYSPLGA 234 (335)
Q Consensus 175 ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~~l~~~~~~gi~v~a~~pl~~ 234 (335)
++..-+...+.+.++++++. +.+.+++..+.||.... .++.++|+++|+.++.=..++.
T Consensus 116 ~~v~~vd~~d~~~l~~~i~~-~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~ 177 (366)
T PRK08247 116 VRFVYVNTASLKAIEQAITP-NTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYT 177 (366)
T ss_pred ceEEEECCCCHHHHHHhccc-CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcc
Confidence 44455555566777776643 33445555677776443 6789999999999988777643
No 247
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=23.68 E-value=3.5e+02 Score=26.73 Aligned_cols=107 Identities=13% Similarity=0.075 Sum_probs=60.2
Q ss_pred ChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH----cCCccEEEe--cC
Q 035739 109 HRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQM----LGLTKSIGL--SN 182 (335)
Q Consensus 109 ~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~----~Gkir~iGv--s~ 182 (335)
+.+.|.+.++. ++..|...+-|+.=..|. ....+.+.+.++.+++ .|.++.+++ ..
T Consensus 116 s~EEI~~ea~~-~~~~G~~~i~LvsGe~p~-----------------~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~ 177 (469)
T PRK09613 116 TQEEIREEVKA-LEDMGHKRLALVAGEDPP-----------------NCDIEYILESIKTIYSTKHGNGEIRRVNVNIAP 177 (469)
T ss_pred CHHHHHHHHHH-HHHCCCCEEEEEeCCCCC-----------------CCCHHHHHHHHHHHHHhccccCcceeeEEEeec
Confidence 46777777764 467887765543211111 2236666777777765 467776665 44
Q ss_pred ccHHHHHHHHHhcCCCCccccCCCC--------cc------cccHHHHHHHHHcCCeEEEeccCC
Q 035739 183 FSRKKIETILTFATIPPSINQVEMH--------PV------WQQRKLIEFCKAKGIIVTAYSPLG 233 (335)
Q Consensus 183 ~~~~~l~~~~~~~~~~~~~~q~~~~--------~~------~~~~~~l~~~~~~gi~v~a~~pl~ 233 (335)
.+.+++.++.+..--...+.|=-|| +. ..+-+.++.+++.|+.-+..+.+-
T Consensus 178 lt~eey~~LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L~ 242 (469)
T PRK09613 178 TTVENYKKLKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVLF 242 (469)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEEE
Confidence 4567777776543222233333332 21 112467889999999855544443
No 248
>PRK01060 endonuclease IV; Provisional
Probab=23.68 E-value=2.7e+02 Score=24.78 Aligned_cols=18 Identities=6% Similarity=0.169 Sum_probs=13.2
Q ss_pred HHHHHhCCCccceEEeecC
Q 035739 119 KSLSALQMEYLDLYLVHWP 137 (335)
Q Consensus 119 ~sL~~Lg~d~iDl~~lH~p 137 (335)
+.++++|.|.++|+ ++.|
T Consensus 19 ~~~~~~G~d~vEl~-~~~p 36 (281)
T PRK01060 19 AEAAEIGANAFMIF-TGNP 36 (281)
T ss_pred HHHHHcCCCEEEEE-CCCC
Confidence 56778899999975 3444
No 249
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=23.68 E-value=2.9e+02 Score=26.82 Aligned_cols=70 Identities=10% Similarity=0.042 Sum_probs=42.8
Q ss_pred HHHHHHHHHcCCcc-----EEEecCccHH---------HHHHHHHhcCCCCccccCCCCcccccH-HHHHHHHHcCCeEE
Q 035739 163 WEAMEESQMLGLTK-----SIGLSNFSRK---------KIETILTFATIPPSINQVEMHPVWQQR-KLIEFCKAKGIIVT 227 (335)
Q Consensus 163 ~~~L~~l~~~Gkir-----~iGvs~~~~~---------~l~~~~~~~~~~~~~~q~~~~~~~~~~-~~l~~~~~~gi~v~ 227 (335)
++.|.+|.++|+|. ++|....... .+.+-+...+++-++.-..+..+.|.. -+....++.||.++
T Consensus 289 lD~LreLe~EG~IG~l~~~fy~t~G~gt~~~~a~~~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~keiE~~GIPvV 368 (431)
T TIGR01917 289 VDVLRDLEKEGKIGELFKYFYSTTGNGTAVANSKQFAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKEIERAGIPVV 368 (431)
T ss_pred HHHHHHHHHcCCcccccCeeEEccCCCccHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEE
Confidence 68899999999996 5555444321 233334445555444433556666653 35567777888887
Q ss_pred EeccC
Q 035739 228 AYSPL 232 (335)
Q Consensus 228 a~~pl 232 (335)
.+..+
T Consensus 369 ~i~~~ 373 (431)
T TIGR01917 369 HICTV 373 (431)
T ss_pred EEeec
Confidence 76544
No 250
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=23.59 E-value=1.5e+02 Score=23.05 Aligned_cols=40 Identities=15% Similarity=-0.017 Sum_probs=35.3
Q ss_pred CChHHHHHHHHHHHHcCCCEeeCCCCcC-CHHHHHHHHHHH
Q 035739 46 SDTDALKLVVLEAIKLGYRHFDTAAMYG-TEKALGEAIAEA 85 (335)
Q Consensus 46 ~~~~~~~~~l~~A~~~Gin~~DtA~~Yg-se~~lG~~l~~~ 85 (335)
.+.+.-.+++...++.|.+.-+.|..|| +...|..|++..
T Consensus 13 ys~EfK~~aV~~~~~~g~sv~evA~e~gIs~~tl~~W~r~y 53 (121)
T PRK09413 13 RTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQY 53 (121)
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3566667788999999999999999999 999999999986
No 251
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=23.59 E-value=6.4e+02 Score=23.91 Aligned_cols=110 Identities=14% Similarity=0.156 Sum_probs=57.2
Q ss_pred CCChHHHHHHHHHHHHcCCCEeeCC--C--CcCCHHHHHHHHHHHHHcCCCCCCCceEEeeccCCCCCChhhHHHHHHHH
Q 035739 45 KSDTDALKLVVLEAIKLGYRHFDTA--A--MYGTEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKS 120 (335)
Q Consensus 45 ~~~~~~~~~~l~~A~~~Gin~~DtA--~--~Ygse~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~~e~s 120 (335)
..+.+++.+.++.+.+.|++.|--. . ..-.-..+-+.++.... .. .+ |..+.+. .+.+.+ +.
T Consensus 103 ~ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~~~i~~Ik~-~~----p~--i~i~~g~--lt~e~l-----~~ 168 (371)
T PRK09240 103 TLDEEEIEREMAAIKKLGFEHILLLTGEHEAKVGVDYIRRALPIARE-YF----SS--VSIEVQP--LSEEEY-----AE 168 (371)
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHH-hC----CC--ceeccCC--CCHHHH-----HH
Confidence 4578889999999999999977322 1 11133444555554310 11 12 2233332 233333 67
Q ss_pred HHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 035739 121 LSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGL 174 (335)
Q Consensus 121 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk 174 (335)
|+..|++.+-+. .+...+.. ++.-..--..-.+++.+++++.+++.|.
T Consensus 169 Lk~aGv~r~~i~----lET~~~~~--~~~i~~~g~~h~~~~rl~~i~~a~~aG~ 216 (371)
T PRK09240 169 LVELGLDGVTVY----QETYNPAT--YAKHHLRGPKRDFEYRLETPERAGRAGI 216 (371)
T ss_pred HHHcCCCEEEEE----EecCCHHH--HHHhCcCCCCCCHHHHHHHHHHHHHcCC
Confidence 888898764433 22111100 0000000002248899999999999984
No 252
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=23.55 E-value=6.1e+02 Score=23.71 Aligned_cols=35 Identities=6% Similarity=-0.104 Sum_probs=23.4
Q ss_pred HHHHHHHHHcCCccEEEecCc-cHHHHHHHHHhcCC
Q 035739 163 WEAMEESQMLGLTKSIGLSNF-SRKKIETILTFATI 197 (335)
Q Consensus 163 ~~~L~~l~~~Gkir~iGvs~~-~~~~l~~~~~~~~~ 197 (335)
|+....+++.=++--+++.+. +++.++++++....
T Consensus 274 ~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~ 309 (343)
T cd04734 274 LPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHA 309 (343)
T ss_pred HHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCC
Confidence 455556665556677777775 57888888876543
No 253
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.45 E-value=7.1e+02 Score=24.78 Aligned_cols=70 Identities=13% Similarity=0.102 Sum_probs=39.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCccEEEe-----cCc-----cHHHHHHHHHhcC-CC-C-ccccCCCCcccccHHHHHHH
Q 035739 153 DLLPMDYRGVWEAMEESQMLGLTKSIGL-----SNF-----SRKKIETILTFAT-IP-P-SINQVEMHPVWQQRKLIEFC 219 (335)
Q Consensus 153 ~~~~~~~~~~~~~L~~l~~~Gkir~iGv-----s~~-----~~~~l~~~~~~~~-~~-~-~~~q~~~~~~~~~~~~l~~~ 219 (335)
.......+++++.++.+++.| ++.|-+ ..| +...+.++++... ++ . .+-....++..-..++++..
T Consensus 182 ~~rsr~~e~Vv~Ei~~l~~~g-~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~l~~i~~l~~ir~~~~~p~~~~~ell~~m 260 (502)
T PRK14326 182 KEKDRRPGDILAEVQALVDEG-VLEVTLLGQNVNAYGVSFGDRGAFSKLLRACGEIDGLERVRFTSPHPAEFTDDVIEAM 260 (502)
T ss_pred CcccCCHHHHHHHHHHHHHCC-CceEEEEeecccccccCCCCHHHHHHHHHHHHhcCCccEEEEeccChhhCCHHHHHHH
Confidence 345666899999999999997 565532 111 2334444544322 11 1 12112233433457899999
Q ss_pred HHcC
Q 035739 220 KAKG 223 (335)
Q Consensus 220 ~~~g 223 (335)
++.|
T Consensus 261 ~~~g 264 (502)
T PRK14326 261 AETP 264 (502)
T ss_pred HhcC
Confidence 8876
No 254
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=23.45 E-value=26 Score=32.51 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHHcCC-ccEEEecCc
Q 035739 157 MDYRGVWEAMEESQMLGL-TKSIGLSNF 183 (335)
Q Consensus 157 ~~~~~~~~~L~~l~~~Gk-ir~iGvs~~ 183 (335)
.....+++-++.|+++|. |..||+-+|
T Consensus 201 ~kr~~~~nlI~~LkekG~pIDgiG~QsH 228 (345)
T COG3693 201 AKRNYVLNLIEELKEKGAPIDGIGIQSH 228 (345)
T ss_pred HHHHHHHHHHHHHHHCCCCccceeeeee
Confidence 345668889999999999 999998776
No 255
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=23.38 E-value=1.7e+02 Score=28.03 Aligned_cols=71 Identities=17% Similarity=0.160 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHHcC-CccEEEecCcc---HHHHHHHHHhcCCCCcccc---CCCCcccccHHHHHHHHHcCCeEEEe
Q 035739 158 DYRGVWEAMEESQMLG-LTKSIGLSNFS---RKKIETILTFATIPPSINQ---VEMHPVWQQRKLIEFCKAKGIIVTAY 229 (335)
Q Consensus 158 ~~~~~~~~L~~l~~~G-kir~iGvs~~~---~~~l~~~~~~~~~~~~~~q---~~~~~~~~~~~~l~~~~~~gi~v~a~ 229 (335)
+...+++.+..|..+| .|.++.|.... .++++++++...+ .++++ .+.....+-.++-+.|+++|+.+..-
T Consensus 100 EH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~-LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvD 177 (386)
T COG1104 100 EHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTI-LVSIMHANNETGTIQPIAEIGEICKERGILFHVD 177 (386)
T ss_pred ccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCce-EEEEEecccCeeecccHHHHHHHHHHcCCeEEEe
Confidence 3567889999997778 89999998876 6667676663321 12222 22222222278899999999877654
No 256
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=23.32 E-value=1.8e+02 Score=28.90 Aligned_cols=76 Identities=14% Similarity=0.109 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHcCCCEeeCCCCcCCHHHHHHHHHHHHHcCCCCCCCceEEeeccC----------CCC-C---ChhhH
Q 035739 48 TDALKLVVLEAIKLGYRHFDTAAMYGTEKALGEAIAEALRLGLVSSREQLFITSKLW----------CQN-A---HRDHV 113 (335)
Q Consensus 48 ~~~~~~~l~~A~~~Gin~~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~~~i~tK~~----------~~~-~---~~~~i 113 (335)
++.+.++.+...+.|++.+=|...+ ++|++. |+ +-..+.=.|... ++. + -...-
T Consensus 10 K~~iv~lAk~L~~lGfeIiATgGTa-------k~L~e~---GI--~v~~Vsk~TgfPEil~GRVKTLHP~IhgGiLarr~ 77 (511)
T TIGR00355 10 KTGIVEFAQGLVERGVELLSTGGTA-------KLLAEA---GV--PVTEVSDYTGFPEMMDGRVKTLHPKVHGGILARRG 77 (511)
T ss_pred cccHHHHHHHHHHCCCEEEEechHH-------HHHHHC---CC--eEEEeecccCCchhhCCccccCCchhhhhhhcCCC
Confidence 5667788888899999999777554 778875 76 333333233220 010 0 00111
Q ss_pred HHHHHHHHHHhCCCccceEEeec
Q 035739 114 IPALKKSLSALQMEYLDLYLVHW 136 (335)
Q Consensus 114 ~~~~e~sL~~Lg~d~iDl~~lH~ 136 (335)
... .+.|+.+|+..|||+.+.-
T Consensus 78 ~~~-~~~l~~~~I~~IDlVvvNL 99 (511)
T TIGR00355 78 DDD-DADLEEHGIEPIDLVVVNL 99 (511)
T ss_pred chH-HHHHHHcCCCceeEEEEec
Confidence 233 6678899999999999884
No 257
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=23.32 E-value=1.4e+02 Score=27.63 Aligned_cols=20 Identities=10% Similarity=0.041 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHcCCccEE
Q 035739 159 YRGVWEAMEESQMLGLTKSI 178 (335)
Q Consensus 159 ~~~~~~~L~~l~~~Gkir~i 178 (335)
+.+.++.|..+.++|||+++
T Consensus 291 ~~k~ld~l~~~ikegKI~y~ 310 (343)
T KOG1196|consen 291 YPKFLDFLLPYIKEGKITYV 310 (343)
T ss_pred hHHHHHHHHHHHhcCceEEe
Confidence 56788999999999999875
No 258
>PLN02428 lipoic acid synthase
Probab=23.27 E-value=6.4e+02 Score=23.85 Aligned_cols=167 Identities=12% Similarity=0.126 Sum_probs=85.1
Q ss_pred CCChHHHHHHHHHHHHcCCCEeeCC-------CCcCCHHHHHHHHHHHHHcCCCCCCCceEEeeccCCCCCChhhHHHHH
Q 035739 45 KSDTDALKLVVLEAIKLGYRHFDTA-------AMYGTEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPAL 117 (335)
Q Consensus 45 ~~~~~~~~~~l~~A~~~Gin~~DtA-------~~Ygse~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~~ 117 (335)
..+.++..++.+.+.+.|++++=.. +.+|.+ .+.+.++..-+ . -..+.|.. ...++-.+
T Consensus 129 ~~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~-~~~elir~Ir~-~----~P~i~Ie~--L~pdf~~d------ 194 (349)
T PLN02428 129 PPDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSG-HFAETVRRLKQ-L----KPEILVEA--LVPDFRGD------ 194 (349)
T ss_pred CCChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHH-HHHHHHHHHHH-h----CCCcEEEE--eCccccCC------
Confidence 3456777788888889998865221 223322 34444544311 0 11233322 22222111
Q ss_pred HHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHc--CCcc----EEEecCccHHHHH
Q 035739 118 KKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDL--LPMDYRGVWEAMEESQML--GLTK----SIGLSNFSRKKIE 189 (335)
Q Consensus 118 e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~L~~l~~~--Gkir----~iGvs~~~~~~l~ 189 (335)
++.|+.|.-.-+|. +-|+++. .+. -.... .....++.++.|+.+++. |..- -+|+ .-+.+++.
T Consensus 195 ~elL~~L~eAG~d~-i~hnlET-v~r------L~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~ 265 (349)
T PLN02428 195 LGAVETVATSGLDV-FAHNIET-VER------LQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVV 265 (349)
T ss_pred HHHHHHHHHcCCCE-EccCccC-cHH------HHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHH
Confidence 33444443333566 3466643 110 00001 023478899999999988 6553 4677 45566665
Q ss_pred HHHHhcC-CCCccccC-----------CCCccccc---HHHHHHHHHcCCeEEEeccCCC
Q 035739 190 TILTFAT-IPPSINQV-----------EMHPVWQQ---RKLIEFCKAKGIIVTAYSPLGA 234 (335)
Q Consensus 190 ~~~~~~~-~~~~~~q~-----------~~~~~~~~---~~~l~~~~~~gi~v~a~~pl~~ 234 (335)
+.++... ..++++.+ +++.+..- ..+-+++.+.|...++.+||-.
T Consensus 266 e~l~~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~vr 325 (349)
T PLN02428 266 QTMEDLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVR 325 (349)
T ss_pred HHHHHHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 5544322 22222222 22222221 4567788899999999999865
No 259
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=23.26 E-value=4.2e+02 Score=25.08 Aligned_cols=117 Identities=16% Similarity=0.174 Sum_probs=0.0
Q ss_pred CCCCceEEeeccCC---------------CCCChhhHHHHHHHHHHHhCCC-ccceEEeecCCCCCCCCCCCCCCCCCCC
Q 035739 92 SSREQLFITSKLWC---------------QNAHRDHVIPALKKSLSALQME-YLDLYLVHWPISSKPGELGFPEPKEDLL 155 (335)
Q Consensus 92 ~~R~~~~i~tK~~~---------------~~~~~~~i~~~~e~sL~~Lg~d-~iDl~~lH~p~~~~~~~~~~~~~~~~~~ 155 (335)
..|..+.|+|-+++ .+.+...|..|+....++++.. .=-+--++...-..|
T Consensus 98 ~~r~tlCVSsQvGC~~~C~FCaTg~~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEP------------- 164 (349)
T COG0820 98 KDRNTLCVSSQVGCPVGCTFCATGQGGLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEP------------- 164 (349)
T ss_pred cCCceEEEecCCCcCCCCCeeccccccceeccCHHHHHHHHHHHHHhcCccccceeeeEEEecCCch-------------
Q ss_pred CCCHHHHHHHHHHHHHc-----CCccEEEecCcc-HHHHHHHHHhcCCCCccccCCCCccccc--HHHHHHHHHcCC
Q 035739 156 PMDYRGVWEAMEESQML-----GLTKSIGLSNFS-RKKIETILTFATIPPSINQVEMHPVWQQ--RKLIEFCKAKGI 224 (335)
Q Consensus 156 ~~~~~~~~~~L~~l~~~-----Gkir~iGvs~~~-~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~l~~~~~~gi 224 (335)
...++.+..+++-+.+. |+ |+|-+|+-. ...|.++.+ ....+..++.+|..+.+ ..+++..++..+
T Consensus 165 l~N~dnV~~a~~i~~~~~G~~ls~-R~iTvSTsGi~~~I~~l~~--~~~~v~LAiSLHa~nd~lR~~L~Pink~~~~ 238 (349)
T COG0820 165 LLNLDNVVKALEIINDDEGLGLSK-RRITVSTSGIVPRIRKLAD--EQLGVALAISLHAPNDELRDQLMPINKKYPI 238 (349)
T ss_pred hhhHHHHHHHHHhhcCcccccccc-eEEEEecCCCchhHHHHHh--hcCCeEEEEecCCCCHHHHhhhhccccCCCH
No 260
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=23.22 E-value=3.3e+02 Score=22.21 Aligned_cols=33 Identities=9% Similarity=0.068 Sum_probs=28.1
Q ss_pred CCceEEeeccCCCCCChhhHHHHHHHHHHHhCC
Q 035739 94 REQLFITSKLWCQNAHRDHVIPALKKSLSALQM 126 (335)
Q Consensus 94 R~~~~i~tK~~~~~~~~~~i~~~~e~sL~~Lg~ 126 (335)
..+++|..|-+....+...+.+++...|+++++
T Consensus 85 ~~DiVviar~~~~~~~~~~l~~~l~~LL~k~~~ 117 (145)
T PRK04820 85 PGDYVVVARSAAAKASNPQLRDAFLRLLRRAGA 117 (145)
T ss_pred CCCEEEEEeCCcccCCHHHHHHHHHHHHHHhCc
Confidence 347888888887788899999999999999875
No 261
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=23.17 E-value=2.2e+02 Score=23.24 Aligned_cols=71 Identities=20% Similarity=0.199 Sum_probs=0.0
Q ss_pred EEecCcc--HHHHHHHHHhcCCCCccccCCCCccccc-HHHHHHHHHcCCeEEEeccCCCCCCcCCCCccCChHHHHHHH
Q 035739 178 IGLSNFS--RKKIETILTFATIPPSINQVEMHPVWQQ-RKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLENEALKEIA 254 (335)
Q Consensus 178 iGvs~~~--~~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~~l~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~~~~l~~la 254 (335)
+|+..|+ ...+..+++..++. +-+....+. .+.+..+-++++.++..|.+.+ .-....+.+.+.+
T Consensus 20 ~GlDgHd~gakvia~~l~d~Gfe-----Vi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g-------~h~~l~~~lve~l 87 (143)
T COG2185 20 LGLDGHDRGAKVIARALADAGFE-----VINLGLFQTPEEAVRAAVEEDVDVIGVSSLDG-------GHLTLVPGLVEAL 87 (143)
T ss_pred cCccccccchHHHHHHHHhCCce-----EEecCCcCCHHHHHHHHHhcCCCEEEEEeccc-------hHHHHHHHHHHHH
Q ss_pred HHhCCC
Q 035739 255 KARGKT 260 (335)
Q Consensus 255 ~~~g~s 260 (335)
++.|..
T Consensus 88 re~G~~ 93 (143)
T COG2185 88 REAGVE 93 (143)
T ss_pred HHhCCc
No 262
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=23.17 E-value=6.2e+02 Score=23.64 Aligned_cols=148 Identities=15% Similarity=0.135 Sum_probs=85.7
Q ss_pred ChHHHHHHHHHHHHcCCCEeeCCCCcC-----------CHHHHHHHHHHHHHcCCCCCCCceEEeeccCCCCCChhhHHH
Q 035739 47 DTDALKLVVLEAIKLGYRHFDTAAMYG-----------TEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIP 115 (335)
Q Consensus 47 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg-----------se~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~ 115 (335)
+.++..+.+..+.+.|++.|=.--..+ .+...=+++++. -.+++-|..=.. ..++.+.
T Consensus 123 ~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~-------~g~~~~l~vDaN-~~~~~~~--- 191 (352)
T cd03325 123 RPSDVAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREA-------VGPDIDIGVDFH-GRVSKPM--- 191 (352)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCcccCCCHHHHHHHHHHHHHHHHh-------hCCCCEEEEECC-CCCCHHH---
Confidence 445566677778899999886532210 111122344442 123444444432 1233222
Q ss_pred HHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcc-EEEecCccHHHHHHHHHh
Q 035739 116 ALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTK-SIGLSNFSRKKIETILTF 194 (335)
Q Consensus 116 ~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~ 194 (335)
..+.++.|. ..++.++-.|... +-++.+.+|++..-+. +.|=|.++..++..+++.
T Consensus 192 -A~~~~~~l~--~~~i~~iEeP~~~--------------------~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~ 248 (352)
T cd03325 192 -AKDLAKELE--PYRLLFIEEPVLP--------------------ENVEALAEIAARTTIPIATGERLFSRWDFKELLED 248 (352)
T ss_pred -HHHHHHhcc--ccCCcEEECCCCc--------------------cCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHh
Confidence 223333442 3456667766431 2367788888876665 667777888898888875
Q ss_pred cCCCCccccCCCCcc---cccHHHHHHHHHcCCeEEEec
Q 035739 195 ATIPPSINQVEMHPV---WQQRKLIEFCKAKGIIVTAYS 230 (335)
Q Consensus 195 ~~~~~~~~q~~~~~~---~~~~~~l~~~~~~gi~v~a~~ 230 (335)
..+ .++|.....+ ..-.++.++|+++||.++.++
T Consensus 249 ~~~--d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 249 GAV--DIIQPDISHAGGITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred CCC--CEEecCccccCCHHHHHHHHHHHHHcCCcEeccC
Confidence 543 4666654433 223689999999999988654
No 263
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=23.14 E-value=55 Score=26.38 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=12.3
Q ss_pred HHHHHHHHcCCCEeeCC
Q 035739 53 LVVLEAIKLGYRHFDTA 69 (335)
Q Consensus 53 ~~l~~A~~~Gin~~DtA 69 (335)
..+...++.|||+||-=
T Consensus 30 ~~i~~QL~~GiR~lDlr 46 (146)
T PF00388_consen 30 WSIREQLESGIRYLDLR 46 (146)
T ss_dssp HHHHHHHHTT--EEEEE
T ss_pred HhHHHHHhccCceEEEE
Confidence 47899999999999743
No 264
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=23.12 E-value=3e+02 Score=24.90 Aligned_cols=99 Identities=17% Similarity=0.094 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCccHHHHHHH
Q 035739 112 HVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSRKKIETI 191 (335)
Q Consensus 112 ~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~ 191 (335)
.-+..+-+.|.++|+++|++-..-.|... |. ..+.+++...+.. ...++..+++ -+...++.+
T Consensus 20 e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~-p~------------~~d~~~~~~~l~~---~~~~~~~~~~-~~~~dv~~A 82 (274)
T cd07938 20 EDKIELIDALSAAGLRRIEVTSFVSPKWV-PQ------------MADAEEVLAGLPR---RPGVRYSALV-PNLRGAERA 82 (274)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCcccc-cc------------cCCHHHHHhhccc---CCCCEEEEEC-CCHHHHHHH
Confidence 45566777799999999998744333211 10 1124445555543 2346667775 456778888
Q ss_pred HHhcCCCCccccCCCCcc-------cc-------cHHHHHHHHHcCCeEEE
Q 035739 192 LTFATIPPSINQVEMHPV-------WQ-------QRKLIEFCKAKGIIVTA 228 (335)
Q Consensus 192 ~~~~~~~~~~~q~~~~~~-------~~-------~~~~l~~~~~~gi~v~a 228 (335)
++.. .+....-+..|.. .. -.+.+++++++|+.+..
T Consensus 83 ~~~g-~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~ 132 (274)
T cd07938 83 LAAG-VDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRG 132 (274)
T ss_pred HHcC-cCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 8743 2211122222221 11 14568899999998864
No 265
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=22.96 E-value=2.9e+02 Score=23.64 Aligned_cols=71 Identities=11% Similarity=0.130 Sum_probs=44.1
Q ss_pred ChHHHHHHHHHHHHcCCCEeeCCCCcC-CHHHHH--HHHHHHHHcCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHH
Q 035739 47 DTDALKLVVLEAIKLGYRHFDTAAMYG-TEKALG--EAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSA 123 (335)
Q Consensus 47 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg-se~~lG--~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~~e~sL~~ 123 (335)
+.++.....+.|.++|..++=|+..|. .-..++ +.+++. -+.+ +-.|....-.+.+.+.+-++.-..|
T Consensus 129 ~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~-------~~~~--v~ik~aGGikt~~~~l~~~~~g~~r 199 (203)
T cd00959 129 TDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEA-------VGGR--VGVKAAGGIRTLEDALAMIEAGATR 199 (203)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHH-------hCCC--ceEEEeCCCCCHHHHHHHHHhChhh
Confidence 567888999999999999999998885 111111 334433 1221 2344422222567777777777777
Q ss_pred hCC
Q 035739 124 LQM 126 (335)
Q Consensus 124 Lg~ 126 (335)
+|+
T Consensus 200 iG~ 202 (203)
T cd00959 200 IGT 202 (203)
T ss_pred ccC
Confidence 775
No 266
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=22.92 E-value=6.6e+02 Score=24.62 Aligned_cols=110 Identities=13% Similarity=0.111 Sum_probs=59.9
Q ss_pred CCcCCHHHHHHHHHHHHHcCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHHhCCC-----ccceEEeecCCCCCCCC
Q 035739 70 AMYGTEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSALQME-----YLDLYLVHWPISSKPGE 144 (335)
Q Consensus 70 ~~Ygse~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~~e~sL~~Lg~d-----~iDl~~lH~p~~~~~~~ 144 (335)
-.||.++.|-++|++..+.- +.+=++|.|=+-+ +-|-..++...++++-+ .+.++.++.|.+...
T Consensus 72 ~VfGg~~~L~~aI~~~~~~~---~P~~I~V~ttC~~-----eiIGDDi~~v~~~~~~~~p~~~~~pvi~v~tpgF~g~-- 141 (455)
T PRK14476 72 TILGGDENVEEAILNICKKA---KPKIIGLCTTGLT-----ETRGDDVAGALKEIRARHPELADTPIVYVSTPDFKGA-- 141 (455)
T ss_pred eEeCCHHHHHHHHHHHHHhh---CCCEEEEeCcchH-----hhhhccHHHHHHHHHhhccccCCCeEEEecCCCCCCc--
Confidence 46888888999998865432 3455666655432 22222233333333322 357888998865321
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHH-HH--------HcCCccEEEecCc---cHHHHHHHHHhcCCCC
Q 035739 145 LGFPEPKEDLLPMDYRGVWEAMEE-SQ--------MLGLTKSIGLSNF---SRKKIETILTFATIPP 199 (335)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~L~~-l~--------~~Gkir~iGvs~~---~~~~l~~~~~~~~~~~ 199 (335)
. ......++++|.+ +. ++++|--||-+++ +.+.+.++++..++.+
T Consensus 142 ---------~-~~G~~~a~~al~~~~~~~~~~~~~~~~~VNiIgg~~~~~~D~~elk~lL~~~Gl~v 198 (455)
T PRK14476 142 ---------L-EDGWAAAVEAIVEALVPPASSTGRRPRQVNVLPGSHLTPGDIEELREIIEAFGLEP 198 (455)
T ss_pred ---------H-HHHHHHHHHHHHHHhcccccCCCCCCCcEEEECCCCCCcccHHHHHHHHHHcCCce
Confidence 0 0112333333332 21 3456888875443 3567788888777654
No 267
>COG4077 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.80 E-value=1.3e+02 Score=24.16 Aligned_cols=84 Identities=12% Similarity=0.060 Sum_probs=51.0
Q ss_pred CceEEeeccCCCCCChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 035739 95 EQLFITSKLWCQNAHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGL 174 (335)
Q Consensus 95 ~~~~i~tK~~~~~~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk 174 (335)
+++.|.--....+.+.+.....++.+++++++..+|..-.... ..+.++=+...++++-++
T Consensus 34 ~e~LiVrGmsRed~d~Dd~~~el~s~ie~~~v~~ld~es~Eg~-------------------elI~e~De~vr~~vei~t 94 (156)
T COG4077 34 DEMLIVRGMSREDMDADDEEVELYSSIEDYLVKKLDKESFEGV-------------------ELIKEIDEFVRRIVEILT 94 (156)
T ss_pred cceEEEecccccccCcchHHHHHHHHHHHhhHHHhCccCHHHH-------------------HHHHHHHHHHHHHHHhhh
Confidence 4455554445556777889999999999999988775432211 002222222334445555
Q ss_pred ccEEEecCccHHHHHHHHHhcCC
Q 035739 175 TKSIGLSNFSRKKIETILTFATI 197 (335)
Q Consensus 175 ir~iGvs~~~~~~l~~~~~~~~~ 197 (335)
=.-|+.-++.-+.+.+-++..+.
T Consensus 95 e~~i~~d~~GfeRlKeslE~~gc 117 (156)
T COG4077 95 ENPIYPDTFGFERLKESLEMIGC 117 (156)
T ss_pred cCCCccCcchHHHHHHHHHHcCc
Confidence 55677777777777776665543
No 268
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=22.69 E-value=6e+02 Score=23.29 Aligned_cols=213 Identities=13% Similarity=0.094 Sum_probs=115.1
Q ss_pred ChHHHHHHHHHHHHcCCCEeeCCCCcCC--------------HHHHHHHHH---HHHHcCCCCCCCceEEeeccCCCC--
Q 035739 47 DTDALKLVVLEAIKLGYRHFDTAAMYGT--------------EKALGEAIA---EALRLGLVSSREQLFITSKLWCQN-- 107 (335)
Q Consensus 47 ~~~~~~~~l~~A~~~Gin~~DtA~~Ygs--------------e~~lG~~l~---~~~~~g~~~~R~~~~i~tK~~~~~-- 107 (335)
.++.++++-+..+++|.+.+.|.....+ +++...+++ +... .. .+.+++|+.-+++..
T Consensus 44 ~Pe~V~~vH~~yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~-~~--~~~~~~VaGsiGP~g~~ 120 (304)
T PRK09485 44 NPELIYQVHLDYFRAGADCAITASYQATFQGFAARGLSEAEAEELIRRSVELAKEARD-EF--WAEKPLVAGSVGPYGAY 120 (304)
T ss_pred ChHHHHHHHHHHHHhCCCEEEeeccccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-hh--ccCCceEEEecCCcccc
Confidence 4455677777778999999998854322 122222221 1111 11 232578877776422
Q ss_pred ------------CChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHc--C
Q 035739 108 ------------AHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQML--G 173 (335)
Q Consensus 108 ------------~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~--G 173 (335)
.+.+.+........+.|--..+|++++-.... ..|+..+++.+++. +
T Consensus 121 l~~~~~y~g~~~~~~~~~~~~~~~q~~~l~~~gvD~i~~ET~~~-------------------~~E~~~~~~~~~~~~~~ 181 (304)
T PRK09485 121 LADGSEYRGDYGLSEEELQDFHRPRIEALAEAGADLLACETIPN-------------------LDEAEALVELLKEEFPG 181 (304)
T ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEeccCC-------------------HHHHHHHHHHHHHhcCC
Confidence 24677777777778887556699999986522 66777777777755 5
Q ss_pred CccEEEecCccH------HHHHHHHHhc-CC-CCccccCCCCcccccHHHHHHHHHc-CCeEEEeccCCCCCCcCCCCc-
Q 035739 174 LTKSIGLSNFSR------KKIETILTFA-TI-PPSINQVEMHPVWQQRKLIEFCKAK-GIIVTAYSPLGAVGKIYGSNQ- 243 (335)
Q Consensus 174 kir~iGvs~~~~------~~l~~~~~~~-~~-~~~~~q~~~~~~~~~~~~l~~~~~~-gi~v~a~~pl~~~G~l~~~~~- 243 (335)
+--.+.++-.+. ..++++++.. .. .+..+-+++.-...-.++++...+. +..+.+| |-+ |..+....
T Consensus 182 ~pv~is~~~~~~g~l~~G~~~~~~~~~l~~~~~~~~iGiNC~~p~~~~~~l~~~~~~~~~pl~~~-PNa--G~~~~~~~~ 258 (304)
T PRK09485 182 VPAWLSFTLRDGTHISDGTPLAEAAALLAASPQVVAVGVNCTAPELVTAAIAALRAVTDKPLVVY-PNS--GEVYDAVTK 258 (304)
T ss_pred CcEEEEEEeCCCCcCCCCCCHHHHHHHHhcCCCceEEEecCCCHHHHHHHHHHHHhccCCcEEEE-CCC--CCCCCCCCC
Confidence 544555543221 1233443332 11 3556777776332224555555443 5666665 333 32221110
Q ss_pred -cCChHHHHHHHHHhCCCHHHHHHHHHhhcCCEEEeCC--CCHHHHHHhhccc
Q 035739 244 -VLENEALKEIAKARGKTVAQVSLRWIVEQGATVVIKS--LNLERMKQNLGIF 293 (335)
Q Consensus 244 -~~~~~~l~~la~~~g~s~~q~al~~~l~~~~~vi~g~--~~~~~l~enl~a~ 293 (335)
........ ..++.+.+|+-. |+.+|=|+ ++|+|++..-+++
T Consensus 259 ~~~~~~~~~--------~~~~~~~~~~~~-G~~iiGGCCGttP~hI~al~~~l 302 (304)
T PRK09485 259 TWHGPADDA--------SLGELAPEWYAA-GARLIGGCCRTTPEDIAALAAAL 302 (304)
T ss_pred cccCCCChH--------HHHHHHHHHHHc-CCeEEeeCCCCCHHHHHHHHHHh
Confidence 00000000 134556677554 77776554 7899998876654
No 269
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=22.65 E-value=5.9e+02 Score=23.18 Aligned_cols=99 Identities=19% Similarity=0.176 Sum_probs=66.7
Q ss_pred HHHHHHcCC-ccEEEecCccHHHHHHHHHhcCCC--------------CccccCCCCcccccHHHHHHHHHcCCeEEEec
Q 035739 166 MEESQMLGL-TKSIGLSNFSRKKIETILTFATIP--------------PSINQVEMHPVWQQRKLIEFCKAKGIIVTAYS 230 (335)
Q Consensus 166 L~~l~~~Gk-ir~iGvs~~~~~~l~~~~~~~~~~--------------~~~~q~~~~~~~~~~~~l~~~~~~gi~v~a~~ 230 (335)
+..+.+.+. +..++++.-+++.++++.+..+++ ++++ +-..|...+.++...|-++|+.|++=+
T Consensus 20 ~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V-~Iatp~~~H~e~~~~AL~aGkhVl~EK 98 (342)
T COG0673 20 LPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAV-YIATPNALHAELALAALEAGKHVLCEK 98 (342)
T ss_pred HHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEE-EEcCCChhhHHHHHHHHhcCCEEEEcC
Confidence 444455454 788999988888877776655532 1111 012222334788889999999999999
Q ss_pred cCCCCCCcCCCCccCChHHHHHHHHHhCC----------CHHHHHHHHHhhcC
Q 035739 231 PLGAVGKIYGSNQVLENEALKEIAKARGK----------TVAQVSLRWIVEQG 273 (335)
Q Consensus 231 pl~~~G~l~~~~~~~~~~~l~~la~~~g~----------s~~q~al~~~l~~~ 273 (335)
|++. .+.+.+.+.++|++.|+ +|.-..++=.+..|
T Consensus 99 Pla~--------t~~ea~~l~~~a~~~~~~l~v~~~~Rf~p~~~~~k~li~~g 143 (342)
T COG0673 99 PLAL--------TLEEAEELVELARKAGVKLMVGFNRRFDPAVQALKELIDSG 143 (342)
T ss_pred CCCC--------CHHHHHHHHHHHHHcCCceeeehhhhcCHHHHHHHHHHhcC
Confidence 9986 34456778889998764 46666777777665
No 270
>PRK09776 putative diguanylate cyclase; Provisional
Probab=22.63 E-value=7e+02 Score=27.08 Aligned_cols=141 Identities=13% Similarity=0.099 Sum_probs=83.7
Q ss_pred ceEEeeccCCCCCChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCc
Q 035739 96 QLFITSKLWCQNAHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLT 175 (335)
Q Consensus 96 ~~~i~tK~~~~~~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gki 175 (335)
.+.++-.+.........+...+.+.|++.++. .+-+.+--..... ......+.+.++.|++.|-
T Consensus 925 ~~~~~iNis~~~l~~~~~~~~~~~~l~~~~~~-~~~l~~Ei~e~~~--------------~~~~~~~~~~~~~l~~~G~- 988 (1092)
T PRK09776 925 GLSIALPLSVAGLSSPTLLPFLLEQLENSPLP-PRLLHLEITETAL--------------LNHAESASRLVQKLRLAGC- 988 (1092)
T ss_pred CcEEEEEcCHHHhCCchHHHHHHHHHHhcCCC-HHHeEEEEecHHh--------------hcCHHHHHHHHHHHHHCCc-
Confidence 34456565555555567778888888887754 3444444332110 1236778899999999997
Q ss_pred cEEEecCccHH--HHHHHHHhcCCCCccccCCCCcc--------ccc--HHHHHHHHHcCCeEEEeccCCCCCCcCCCCc
Q 035739 176 KSIGLSNFSRK--KIETILTFATIPPSINQVEMHPV--------WQQ--RKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQ 243 (335)
Q Consensus 176 r~iGvs~~~~~--~l~~~~~~~~~~~~~~q~~~~~~--------~~~--~~~l~~~~~~gi~v~a~~pl~~~G~l~~~~~ 243 (335)
.+.+.+|... .+..+.+ .+++.+-+.-+.. .+. ..++..|++.|+.+++- |.
T Consensus 989 -~~~lddfg~g~~~~~~l~~---~~~d~iKid~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iae------gV------ 1052 (1092)
T PRK09776 989 -RVVLSDFGRGLSSFNYLKA---FMADYLKLDGELVANLHGNLMDEMLISIIQGHAQRLGMKTIAG------PV------ 1052 (1092)
T ss_pred -EEEEcCCCCCchHHHHHHh---CCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHcCCcEEec------cc------
Confidence 5777777632 3333322 2233333332221 121 56789999999999984 22
Q ss_pred cCChHHHHHHHHHhCCCHHHHHHHHHhhcC
Q 035739 244 VLENEALKEIAKARGKTVAQVSLRWIVEQG 273 (335)
Q Consensus 244 ~~~~~~l~~la~~~g~s~~q~al~~~l~~~ 273 (335)
+.+.-.+.+++.|+...| .|..++|
T Consensus 1053 --Et~~~~~~l~~~g~~~~Q---G~~~~~P 1077 (1092)
T PRK09776 1053 --ELPLVLDTLSGIGVDLAY---GYAIARP 1077 (1092)
T ss_pred --CCHHHHHHHHHcCCCEEe---ccccCCC
Confidence 234555566777777766 4666655
No 271
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=22.60 E-value=4.7e+02 Score=22.02 Aligned_cols=116 Identities=16% Similarity=0.176 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHcCCCEeeCCCC--cC-----CHHHHHHHHHHHHHcCCCCCCCceEEeeccC-----CCCCChhhHHHH
Q 035739 49 DALKLVVLEAIKLGYRHFDTAAM--YG-----TEKALGEAIAEALRLGLVSSREQLFITSKLW-----CQNAHRDHVIPA 116 (335)
Q Consensus 49 ~~~~~~l~~A~~~Gin~~DtA~~--Yg-----se~~lG~~l~~~~~~g~~~~R~~~~i~tK~~-----~~~~~~~~i~~~ 116 (335)
+++..++-.++..|-..+=+... |. +++++|++-+++ . .-.-+-++|-.. ..+++++.+
T Consensus 28 ~~aa~~i~~~l~~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR---~---~lpaIaLt~dsS~lTai~NDy~yd~v--- 98 (176)
T COG0279 28 ERAAQLLVQSLLNGNKVLACGNGGSAADAQHFAAELTGRFEKER---P---SLPAIALSTDSSVLTAIANDYGYDEV--- 98 (176)
T ss_pred HHHHHHHHHHHHcCCEEEEECCCcchhhHHHHHHHHhhHHHhcC---C---CCCeeEeecccHHHhhhhccccHHHH---
Confidence 55677888899999887755432 22 466777776643 1 223355665542 356666655
Q ss_pred HHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCccHHHHHHHHH
Q 035739 117 LKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSRKKIETILT 193 (335)
Q Consensus 117 ~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~ 193 (335)
+.+..+.+|. .=|++.==.+... -.-++++++..|+.|.. -||+..-+...+..+++
T Consensus 99 FsRqveA~g~-~GDvLigISTSGN------------------S~nVl~Ai~~Ak~~gm~-vI~ltG~~GG~~~~~~D 155 (176)
T COG0279 99 FSRQVEALGQ-PGDVLIGISTSGN------------------SKNVLKAIEAAKEKGMT-VIALTGKDGGKLAGLLD 155 (176)
T ss_pred HHHHHHhcCC-CCCEEEEEeCCCC------------------CHHHHHHHHHHHHcCCE-EEEEecCCCcccccccc
Confidence 4455556663 3376665544322 45789999999999875 69999999888877764
No 272
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=22.29 E-value=7.3e+02 Score=24.14 Aligned_cols=146 Identities=14% Similarity=0.027 Sum_probs=79.5
Q ss_pred CCCcCCHHHHHHHHHHHHHcCCCCCC-CceEEeeccCCCCCChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCC
Q 035739 69 AAMYGTEKALGEAIAEALRLGLVSSR-EQLFITSKLWCQNAHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGF 147 (335)
Q Consensus 69 A~~Ygse~~lG~~l~~~~~~g~~~~R-~~~~i~tK~~~~~~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~ 147 (335)
.-.||.++.|-++|++..+.. ++ +-++|.|=+... .--+.+..-+++.-++++ +.++.+|.|.......
T Consensus 96 d~V~Gg~~~L~~aI~~~~~~~---~p~~~I~V~~tC~~~-liGdDi~~v~~~~~~~~~---~pvi~v~t~gf~g~~~--- 165 (443)
T TIGR01862 96 DIVFGGEKKLKKLIHEAFTEF---PLIKAISVYATCPTG-LIGDDIEAVAKEVSKEIG---KDVVAVNCPGFAGVSQ--- 165 (443)
T ss_pred ceeeCcHHHHHHHHHHHHHhC---CccceEEEECCChHH-HhccCHHHHHHHHHHhcC---CCEEEEecCCccCCcc---
Confidence 346888888999998876533 44 557777665331 112334444444334444 6899999887643100
Q ss_pred CCCCCCCCCCCHHHHHHH-HHHHH--------HcCCccEEEecCcc--HHHHHHHHHhcCCCCccccCC-----------
Q 035739 148 PEPKEDLLPMDYRGVWEA-MEESQ--------MLGLTKSIGLSNFS--RKKIETILTFATIPPSINQVE----------- 205 (335)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~-L~~l~--------~~Gkir~iGvs~~~--~~~l~~~~~~~~~~~~~~q~~----------- 205 (335)
......+.++ ++.+. ++++|--||-.++. .+.+.++++..++++...-..
T Consensus 166 --------~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~t~eei~~~~ 237 (443)
T TIGR01862 166 --------SKGHHIANIAVINDKVGTREKEITTEYDVNIIGEYNIGGDAWVMRIYLEEMGIQVVATFTGDGTYDEIRLMH 237 (443)
T ss_pred --------chHHHHHHHHHHHHHhCCCCcccCCCCeEEEEccCcCcccHHHHHHHHHHcCCeEEEEECCCCCHHHHHhcc
Confidence 0112333333 33343 24678888855543 457888888887654321111
Q ss_pred ---CCcccc-c--HHHHHHH-HHcCCeEEEeccC
Q 035739 206 ---MHPVWQ-Q--RKLIEFC-KAKGIIVTAYSPL 232 (335)
Q Consensus 206 ---~~~~~~-~--~~~l~~~-~~~gi~v~a~~pl 232 (335)
+|+... . ....++. ++.|++++...|+
T Consensus 238 ~A~lniv~~~~~~~~~A~~L~er~GiP~~~~~p~ 271 (443)
T TIGR01862 238 KAKLNLVHCARSANYIANELEERYGIPWMKIDFF 271 (443)
T ss_pred cCCEEEEEChHHHHHHHHHHHHHhCCCeEecccC
Confidence 222111 1 2233344 4669999987764
No 273
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=22.26 E-value=3.3e+02 Score=28.92 Aligned_cols=93 Identities=15% Similarity=0.053 Sum_probs=52.8
Q ss_pred ChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHc--CCccEEEecCccHH
Q 035739 109 HRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQML--GLTKSIGLSNFSRK 186 (335)
Q Consensus 109 ~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~--Gkir~iGvs~~~~~ 186 (335)
+.+.|++-++...........-+|+|+..+.- ..+.+.+|.+..++ ..+++|-++|....
T Consensus 100 gVDdIReLIe~a~~~P~~gr~KVIIIDEah~L------------------T~~A~NALLKtLEEPP~~v~FILaTtd~~K 161 (830)
T PRK07003 100 GVDEMAALLERAVYAPVDARFKVYMIDEVHML------------------TNHAFNAMLKTLEEPPPHVKFILATTDPQK 161 (830)
T ss_pred cHHHHHHHHHHHHhccccCCceEEEEeChhhC------------------CHHHHHHHHHHHHhcCCCeEEEEEECChhh
Confidence 34566666665443332234568888876432 23567777777766 68999999998654
Q ss_pred HHHHHHHhcCCCCccccCCCCccccc---HHHHHHHHHcCCe
Q 035739 187 KIETILTFATIPPSINQVEMHPVWQQ---RKLIEFCKAKGII 225 (335)
Q Consensus 187 ~l~~~~~~~~~~~~~~q~~~~~~~~~---~~~l~~~~~~gi~ 225 (335)
.+..++.. +.++.|..+..+ .-+...|++.||.
T Consensus 162 Ip~TIrSR------Cq~f~Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 162 IPVTVLSR------CLQFNLKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred ccchhhhh------eEEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 44444443 344455554332 2233445555543
No 274
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=22.21 E-value=6.5e+02 Score=23.53 Aligned_cols=108 Identities=14% Similarity=0.172 Sum_probs=57.0
Q ss_pred CccEEEecC-----ccHHHHHHHHHhcC--CCC-ccccCCCCcccccHHHHHHHHHcCCeEEEeccCCCCCCcCCCCccC
Q 035739 174 LTKSIGLSN-----FSRKKIETILTFAT--IPP-SINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVL 245 (335)
Q Consensus 174 kir~iGvs~-----~~~~~l~~~~~~~~--~~~-~~~q~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~~G~l~~~~~~~ 245 (335)
.|+.|=+.. .+++++.++++... +.. .-+-++.||..-..+.++.+++.|+.-+..+.-+.
T Consensus 51 ~v~~iyfGGGTPs~l~~~~l~~ll~~i~~~~~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~----------- 119 (350)
T PRK08446 51 KIESVFIGGGTPSTVSAKFYEPIFEIISPYLSKDCEITTEANPNSATKAWLKGMKNLGVNRISFGVQSF----------- 119 (350)
T ss_pred ceeEEEECCCccccCCHHHHHHHHHHHHHhcCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccC-----------
Confidence 566553332 34556666655432 111 12334556655557899999999988777654432
Q ss_pred ChHHHHHHHHHhCCCHHHHHHHHHhhcC-----CEEEeCC--CCHHHHHHhhcc
Q 035739 246 ENEALKEIAKARGKTVAQVSLRWIVEQG-----ATVVIKS--LNLERMKQNLGI 292 (335)
Q Consensus 246 ~~~~l~~la~~~g~s~~q~al~~~l~~~-----~~vi~g~--~~~~~l~enl~a 292 (335)
..+.++.+.+.+....+.-++..+...| .-.++|. .+.+.+++.++.
T Consensus 120 ~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgqt~~~~~~~l~~ 173 (350)
T PRK08446 120 NEDKLKFLGRIHSQKQIIKAIENAKKAGFENISIDLIYDTPLDNKKLLKEELKL 173 (350)
T ss_pred CHHHHHHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCCHHHHHHHHHH
Confidence 2344555544443333344555555555 1234442 356666665543
No 275
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=22.15 E-value=5.5e+02 Score=22.64 Aligned_cols=34 Identities=9% Similarity=-0.118 Sum_probs=16.3
Q ss_pred HHHHHHHHHcCCccEEEecCcc-HHHHHHHHHhcC
Q 035739 163 WEAMEESQMLGLTKSIGLSNFS-RKKIETILTFAT 196 (335)
Q Consensus 163 ~~~L~~l~~~Gkir~iGvs~~~-~~~l~~~~~~~~ 196 (335)
|+.+.++++.-.+.-|.-.... .+++.++++..+
T Consensus 186 ~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G 220 (253)
T PRK02083 186 LELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGG 220 (253)
T ss_pred HHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCC
Confidence 4444455544445545444333 455655555433
No 276
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=22.09 E-value=4.5e+02 Score=21.58 Aligned_cols=78 Identities=21% Similarity=0.205 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHcCCCEeeCCCCcC---C--HHHHHHHHHHHHHcCCCCCCCceEEeeccCCCC-CChhhHHHHHHHHH
Q 035739 48 TDALKLVVLEAIKLGYRHFDTAAMYG---T--EKALGEAIAEALRLGLVSSREQLFITSKLWCQN-AHRDHVIPALKKSL 121 (335)
Q Consensus 48 ~~~~~~~l~~A~~~Gin~~DtA~~Yg---s--e~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~-~~~~~i~~~~e~sL 121 (335)
.++..+..+.|.+.|...+.....|+ + ++.+-+.++...+. -+.++-+.-+..+.. .+++.+.+..+. +
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~----~~~~~pv~iy~~p~~~~~~~~~~~~~~~-~ 138 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEA----ADGGLPLKVILETRGLKTADEIAKAARI-A 138 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHH----hcCCceEEEEEECCCCCCHHHHHHHHHH-H
Confidence 57788899999999999999765554 3 55566666554322 011334443332222 244555544333 3
Q ss_pred HHhCCCccc
Q 035739 122 SALQMEYLD 130 (335)
Q Consensus 122 ~~Lg~d~iD 130 (335)
+..|++.+.
T Consensus 139 ~~~g~~~iK 147 (201)
T cd00945 139 AEAGADFIK 147 (201)
T ss_pred HHhCCCEEE
Confidence 567766543
No 277
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=22.07 E-value=2.3e+02 Score=24.40 Aligned_cols=58 Identities=17% Similarity=0.186 Sum_probs=34.2
Q ss_pred HHHHHHHHcCCccEEEecCcc-HHHHHHHHHhcCCCCccccCCCCcccccHHHHHHHHHcCCeEEE
Q 035739 164 EAMEESQMLGLTKSIGLSNFS-RKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTA 228 (335)
Q Consensus 164 ~~L~~l~~~Gkir~iGvs~~~-~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~v~a 228 (335)
+.++.++++-.=-.||..+.. .++++.+++..- .+.+ +|. -..+++++|+++|+.++.
T Consensus 48 ~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA-~Fiv-----SP~-~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 48 EAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGA-QFIV-----SPG-FDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp HHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT--SEEE-----ESS---HHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCC-CEEE-----CCC-CCHHHHHHHHHcCCcccC
Confidence 444444433222358988875 777888877542 2222 221 237899999999999987
No 278
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=21.83 E-value=6.5e+02 Score=23.89 Aligned_cols=51 Identities=12% Similarity=0.127 Sum_probs=33.9
Q ss_pred cHHHHHHHHHhcCCCCccccCCCCccccc---HHHHHHHHHcCCeEEEeccCCC
Q 035739 184 SRKKIETILTFATIPPSINQVEMHPVWQQ---RKLIEFCKAKGIIVTAYSPLGA 234 (335)
Q Consensus 184 ~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~~l~~~~~~gi~v~a~~pl~~ 234 (335)
+.+.+++++...+.+.+++..+.||.-.- .++.+.|+++|+.++.=..++.
T Consensus 125 d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~ 178 (385)
T PRK08574 125 STEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFAT 178 (385)
T ss_pred CHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCc
Confidence 45667776654234455556666664322 6788999999999988777654
No 279
>TIGR03126 one_C_fae formaldehyde-activating enzyme. This family consists of formaldehyde-activating enzyme, or the corresponding domain of longer, bifunctional proteins. It links formaldehyde to the C1 carrier tetrahydromethanopterin (H4MPT), an analog of tetrahydrofolate, and is common among species with H4MPT. The ribulose monophosphate (RuMP) pathway, which removes the toxic metabolite formaldehyde by assimilation, runs in the opposite direction in some species to produce ribulose 5-phosphate for nucleotide biosynthesis, leaving formaldehyde as an additional metabolite. In these species, formaldehyde activating enzyme may occur as a fusion protein with D-arabino 3-hexulose 6-phosphate formaldehyde lyase from the RuMP pathway.
Probab=21.79 E-value=1.2e+02 Score=25.02 Aligned_cols=53 Identities=19% Similarity=0.470 Sum_probs=36.2
Q ss_pred CcC-CHHHHHHHHHHHHHcCCCCCC---CceEEeeccCCC----------CCChhhHHHHHHHHHHHh
Q 035739 71 MYG-TEKALGEAIAEALRLGLVSSR---EQLFITSKLWCQ----------NAHRDHVIPALKKSLSAL 124 (335)
Q Consensus 71 ~Yg-se~~lG~~l~~~~~~g~~~~R---~~~~i~tK~~~~----------~~~~~~i~~~~e~sL~~L 124 (335)
++| .+..+++++.+.+++|++ ++ ++++|..-+|.. ++.++..+.++++.+++.
T Consensus 77 ~fGpaQ~avA~AVaD~V~eG~i-P~~~addl~Iiv~Vfi~p~a~D~~kiy~~NY~ATKlAI~rAm~~~ 143 (160)
T TIGR03126 77 MFGPAQAAVAKAVADSVEEGII-PKDEADDLVIIVSVFIHPEAKDDRKIYKYNYEATKLAIKRAMEGE 143 (160)
T ss_pred HcCHHHHHHHHHHHHHHHcCCC-ChhhhCcEEEEEEEEeccccccHHHHHHHHHHHHHHHHHHHHcCC
Confidence 456 688899999999999986 55 458888778642 223555566666665543
No 280
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=21.68 E-value=1.2e+02 Score=27.85 Aligned_cols=49 Identities=18% Similarity=0.155 Sum_probs=34.5
Q ss_pred hhhHHHHHHHHHHHhCCCcc--ceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccE
Q 035739 110 RDHVIPALKKSLSALQMEYL--DLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKS 177 (335)
Q Consensus 110 ~~~i~~~~e~sL~~Lg~d~i--Dl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~ 177 (335)
.+...+.+.+.+++||+.+- ..+.-+.+ .....+++.+++|.++|.|-.
T Consensus 81 ~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~-------------------~~~~~v~~~f~~L~~~G~iY~ 131 (312)
T cd00668 81 VEEMSGEHKEDFRRLGISYDWSDEYITTEP-------------------EYSKAVELIFSRLYEKGLIYR 131 (312)
T ss_pred HHHHHHHHHHHHHHhCccccCCCCeECCCH-------------------HHHHHHHHHHHHHHHCCCEEe
Confidence 46677888999999997542 22222222 126679999999999999854
No 281
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=21.67 E-value=6.2e+02 Score=23.09 Aligned_cols=125 Identities=14% Similarity=0.181 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCc-cHHHHHHHHHhcCCCCccccCCCCcccccHHHHHHHHHcCCeEEEeccCCCCCC
Q 035739 159 YRGVWEAMEESQMLGLTKSIGLSNF-SRKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPLGAVGK 237 (335)
Q Consensus 159 ~~~~~~~L~~l~~~Gkir~iGvs~~-~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~~G~ 237 (335)
.++....++.+++.|.--.+=++.. ....+..+++..+.. .+. ....+..+.+.++..+++||.+.. .|.+. .
T Consensus 172 ~~~~~~~~~~A~~~g~~v~~H~~E~~~~~~~~~a~~~~g~~-~i~--H~~~l~~~~~~~~~l~~~gi~v~~-~P~sn--~ 245 (325)
T cd01320 172 PEKFVRAFQRAREAGLRLTAHAGEAGGPESVRDALDLLGAE-RIG--HGIRAIEDPELVKRLAERNIPLEV-CPTSN--V 245 (325)
T ss_pred HHHHHHHHHHHHHCCCceEEeCCCCCCHHHHHHHHHHcCCc-ccc--hhhccCccHHHHHHHHHcCCeEEE-CCCcc--c
Confidence 5566777788888776544444332 234555566644421 111 111111235689999999998754 34332 1
Q ss_pred cCCCCccCChHHHHHHHHHhCCCHHHHHHHHHhhcCCEEEeCCCCH-----HHHHHhhcccc-ccCCHHHHHHH
Q 035739 238 IYGSNQVLENEALKEIAKARGKTVAQVSLRWIVEQGATVVIKSLNL-----ERMKQNLGIFD-WKLTDDDYDKI 305 (335)
Q Consensus 238 l~~~~~~~~~~~l~~la~~~g~s~~q~al~~~l~~~~~vi~g~~~~-----~~l~enl~a~~-~~L~~~~~~~l 305 (335)
..+... ..+.. -++..+..|+.+.+|+.++ +-..+...+.. ..|+.+|+..+
T Consensus 246 ~l~~~~------------~~~~~----p~~~l~~~Gv~v~lgTD~~~~~~~~~~~e~~~~~~~~~l~~~el~~~ 303 (325)
T cd01320 246 QTGAVK------------SLAEH----PLRELLDAGVKVTINTDDPTVFGTYLTDEYELLAEAFGLTEEELKKL 303 (325)
T ss_pred cccccC------------CcccC----hHHHHHHCCCEEEECCCCCcccCCCHHHHHHHHHHHcCCCHHHHHHH
Confidence 111000 01112 2455667787777776542 22223222222 36787776655
No 282
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=21.45 E-value=4.7e+02 Score=24.75 Aligned_cols=73 Identities=12% Similarity=0.134 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHcCCccEEEecCccHHHHHHHHHhcCCCCccccCCCCccccc---HHHHHHHHHcCCeEEEeccCCC
Q 035739 161 GVWEAMEESQMLGLTKSIGLSNFSRKKIETILTFATIPPSINQVEMHPVWQQ---RKLIEFCKAKGIIVTAYSPLGA 234 (335)
Q Consensus 161 ~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~~l~~~~~~gi~v~a~~pl~~ 234 (335)
.....+..+.+.-.++..-+...+.+.++++++ .+.+.+++..+.|+...- .++.+.|+++|+.++.=..++.
T Consensus 97 ~~~~~~~~~~~~~G~~v~~vd~~d~~~le~~i~-~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~ 172 (378)
T TIGR01329 97 GTDRLLTQVVPRSGVVVVHVDTTDLDKVKAALG-PKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMS 172 (378)
T ss_pred HHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcC-cCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcc
Confidence 344444444333334444444446777777765 233445555566665432 6789999999999987766543
No 283
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=21.34 E-value=5.1e+02 Score=21.95 Aligned_cols=115 Identities=17% Similarity=0.236 Sum_probs=67.3
Q ss_pred CceEEeeccCCCCCChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 035739 95 EQLFITSKLWCQNAHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGL 174 (335)
Q Consensus 95 ~~~~i~tK~~~~~~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gk 174 (335)
....+.-.+.......+.....+...++..+...-.+ .+--+.... ......+.+.+..+++.|.
T Consensus 82 ~~~~l~ini~~~~l~~~~~~~~~~~~l~~~~~~~~~l-~iei~e~~~--------------~~~~~~~~~~~~~l~~~G~ 146 (240)
T cd01948 82 PDLRLSVNLSARQLRDPDFLDRLLELLAETGLPPRRL-VLEITESAL--------------IDDLEEALATLRRLRALGV 146 (240)
T ss_pred CCeEEEEECCHHHhCCcHHHHHHHHHHHHcCCCHHHE-EEEEecchh--------------hCCHHHHHHHHHHHHHCCC
Confidence 4445555554333334567788888898888764223 232222111 1224568899999999998
Q ss_pred ccEEEecCccH--HHHHHHHHhcCCCCccccCCCCcccc--------c--HHHHHHHHHcCCeEEEe
Q 035739 175 TKSIGLSNFSR--KKIETILTFATIPPSINQVEMHPVWQ--------Q--RKLIEFCKAKGIIVTAY 229 (335)
Q Consensus 175 ir~iGvs~~~~--~~l~~~~~~~~~~~~~~q~~~~~~~~--------~--~~~l~~~~~~gi~v~a~ 229 (335)
.+++.+++. ..++.+.. .+|.++-+..+.... . ..++..|+..|+.+++-
T Consensus 147 --~l~ld~~g~~~~~~~~l~~---~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~ 208 (240)
T cd01948 147 --RIALDDFGTGYSSLSYLKR---LPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAE 208 (240)
T ss_pred --eEEEeCCCCcHhhHHHHHh---CCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEE
Confidence 478877752 23333322 234444444332211 1 46789999999999984
No 284
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=21.28 E-value=90 Score=21.36 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=15.0
Q ss_pred HHHHHHHHhCCCHHHHH
Q 035739 249 ALKEIAKARGKTVAQVS 265 (335)
Q Consensus 249 ~l~~la~~~g~s~~q~a 265 (335)
.+++||+++|+++.+|.
T Consensus 24 ~lkdIA~~Lgvs~~tIr 40 (60)
T PF10668_consen 24 KLKDIAEKLGVSESTIR 40 (60)
T ss_pred cHHHHHHHHCCCHHHHH
Confidence 58899999999998875
No 285
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=21.19 E-value=5.4e+02 Score=23.88 Aligned_cols=71 Identities=13% Similarity=-0.023 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHcCCccEEEecCccHHHHHHHHHhcC-----CCCccccCCCCcccccHHHHHHHHHcCCeEEEeccCCC
Q 035739 161 GVWEAMEESQMLGLTKSIGLSNFSRKKIETILTFAT-----IPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPLGA 234 (335)
Q Consensus 161 ~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~-----~~~~~~q~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~ 234 (335)
+.+..+-+..++--=.-+-+-+.+++.++..++.+. -++.+|.++... . ++.++.++++|+..+.--++..
T Consensus 82 eam~k~I~~v~~~~d~Pl~IDSt~p~a~eaaLk~~~e~G~~gR~IiNSIn~e~--~-~eel~llk~yg~aavIvLa~d~ 157 (308)
T PRK00979 82 EAMEKYIDFVSEITDLPFLIDSTSPEARIAAAKYATELGLADRAIYNSINPSI--E-EEEIEALKESDIKAAIVLAFDP 157 (308)
T ss_pred HHHHHHHHHHHhcCCCCEEEeCCCHHHHHHHHHHhhhcCCCCceEEEeccCCC--C-HHHHHHHHHhCCceEEEEEcCC
Confidence 344443333333222467888888999999988753 255666555442 2 2558999999966333234443
No 286
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=21.17 E-value=2.8e+02 Score=21.21 Aligned_cols=51 Identities=24% Similarity=0.237 Sum_probs=29.4
Q ss_pred ecCccHHHHHHHHHhcCCCCccccC--CCCcccccHHHHHHHHHcCCeEEEeccC
Q 035739 180 LSNFSRKKIETILTFATIPPSINQV--EMHPVWQQRKLIEFCKAKGIIVTAYSPL 232 (335)
Q Consensus 180 vs~~~~~~l~~~~~~~~~~~~~~q~--~~~~~~~~~~~l~~~~~~gi~v~a~~pl 232 (335)
.+..+.+++..++... .|.++-+ --+......++.++++++||++..+..-
T Consensus 36 ~~~l~~~~l~~~~~~~--~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 36 LSDLDPEALLPLLAED--RPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred cccCCHHHHHHHHhhC--CCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcH
Confidence 3445566666665543 2323222 2222223477889999999999887543
No 287
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=21.17 E-value=2e+02 Score=21.67 Aligned_cols=61 Identities=15% Similarity=0.156 Sum_probs=40.5
Q ss_pred HHHHHHcCCccEEEecCccHHHH---HHHHHhcCCCCccccCCCCccccc-HHHHHHHHHcCCeEEE
Q 035739 166 MEESQMLGLTKSIGLSNFSRKKI---ETILTFATIPPSINQVEMHPVWQQ-RKLIEFCKAKGIIVTA 228 (335)
Q Consensus 166 L~~l~~~Gkir~iGvs~~~~~~l---~~~~~~~~~~~~~~q~~~~~~~~~-~~~l~~~~~~gi~v~a 228 (335)
++++.+...+..+-+++-+..+. .++++... .+++.=++..-..+ .++++.|+++|+.++.
T Consensus 54 ~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~--~v~~EKP~~~~~~~~~~l~~~a~~~~~~~~V 118 (120)
T PF01408_consen 54 LEELLADEDVDAVIIATPPSSHAEIAKKALEAGK--HVLVEKPLALTLEEAEELVEAAKEKGVKVMV 118 (120)
T ss_dssp HHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTS--EEEEESSSSSSHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCC--EEEEEcCCcCCHHHHHHHHHHHHHhCCEEEE
Confidence 45666666899999988885554 44444332 45555555443333 7899999999988764
No 288
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=21.11 E-value=3e+02 Score=25.35 Aligned_cols=69 Identities=10% Similarity=-0.022 Sum_probs=37.9
Q ss_pred HHHHHHHHcCCcc-EEEecCccHHHHHHHHHhcCCCCccccCCCCcc---cccHHHHHHHHHcCCeEEEeccCCC
Q 035739 164 EAMEESQMLGLTK-SIGLSNFSRKKIETILTFATIPPSINQVEMHPV---WQQRKLIEFCKAKGIIVTAYSPLGA 234 (335)
Q Consensus 164 ~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~~l~~~~~~gi~v~a~~pl~~ 234 (335)
+.+.++.+.-.+. ..|=|-++..++.++++.... .++|+..... .+-.++...|+.+||.++..+.+.+
T Consensus 196 ~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~--d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~es 268 (307)
T TIGR01927 196 DEMSAFSEATGTAIALDESLWELPQLADEYGPGWR--GALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVFES 268 (307)
T ss_pred HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCC--ceEEECchhcCCHHHHHHHHHHHHHcCCCEEEECccch
Confidence 4555555543322 455556666666666664332 2333333322 1225677888888888887755543
No 289
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=21.06 E-value=7.5e+02 Score=23.80 Aligned_cols=129 Identities=16% Similarity=0.131 Sum_probs=64.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCccEEEecC-----cc-----HHHHHHHHHhc-CCC--CccccCCCCcccccHHHHHHH
Q 035739 153 DLLPMDYRGVWEAMEESQMLGLTKSIGLSN-----FS-----RKKIETILTFA-TIP--PSINQVEMHPVWQQRKLIEFC 219 (335)
Q Consensus 153 ~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~-----~~-----~~~l~~~~~~~-~~~--~~~~q~~~~~~~~~~~~l~~~ 219 (335)
.+...+.+++.+.++.+++.| ++.|-+.. ++ ...+.++++.. ..+ ..+.....++..-..++++.+
T Consensus 164 ~~r~r~~e~Vv~Ei~~l~~~g-~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~g~~~i~~~~~~p~~i~~ell~~m 242 (429)
T TIGR00089 164 RERSRPPEDILEEVKELVSKG-VKEIVLLGQNVGAYGKDLKGETNLADLLRELSKIDGIERIRFGSSHPDDVTDDLIELI 242 (429)
T ss_pred CCCCCCHHHHHHHHHHHHHCC-CceEEEEeeccccccCCCCCCcCHHHHHHHHhcCCCCCEEEECCCChhhcCHHHHHHH
Confidence 455677899999999999987 44443321 11 01233443332 111 112222234433357889999
Q ss_pred HHcC--CeEEEeccCCCCCCcCCCCccCChHHHHHHHHHhCCCHHHHHHHHHhhcC------CEEEeCC--CCHHHHHHh
Q 035739 220 KAKG--IIVTAYSPLGAVGKIYGSNQVLENEALKEIAKARGKTVAQVSLRWIVEQG------ATVVIKS--LNLERMKQN 289 (335)
Q Consensus 220 ~~~g--i~v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~g~s~~q~al~~~l~~~------~~vi~g~--~~~~~l~en 289 (335)
++.| ...+.. ++-+ ...+.++.+.+.+...-..-++..+...+ ...|+|. .+.+.+++.
T Consensus 243 ~~~~~~~~~l~i-giES----------~s~~vLk~m~R~~~~~~~~~~i~~lr~~~~~i~i~~~~IvG~PgET~ed~~~t 311 (429)
T TIGR00089 243 AENPKVCKHLHL-PVQS----------GSDRILKRMNRKYTREEYLDIVEKIRAKIPDAAITTDIIVGFPGETEEDFEET 311 (429)
T ss_pred HhCCCccCceee-cccc----------CChHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEEeeEEEECCCCCHHHHHHH
Confidence 8875 332222 2221 12344444433322222223444444432 3467774 467777777
Q ss_pred hccc
Q 035739 290 LGIF 293 (335)
Q Consensus 290 l~a~ 293 (335)
++.+
T Consensus 312 l~~i 315 (429)
T TIGR00089 312 LDLV 315 (429)
T ss_pred HHHH
Confidence 7654
No 290
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=21.04 E-value=5.9e+02 Score=25.02 Aligned_cols=116 Identities=16% Similarity=0.141 Sum_probs=62.4
Q ss_pred CCCCcCCHHHHHHHHHHHHHcCCCCC-CCceEEeeccCCCCCChhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCC
Q 035739 68 TAAMYGTEKALGEAIAEALRLGLVSS-REQLFITSKLWCQNAHRDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELG 146 (335)
Q Consensus 68 tA~~Ygse~~lG~~l~~~~~~g~~~~-R~~~~i~tK~~~~~~~~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~ 146 (335)
..-.||.++.|-++|++..+. + + .+-++|.|=+-. ..--+.+..-+++.-++. .-+.++.+|.|.......
T Consensus 104 ~d~VfGg~~kL~~aI~~~~~~-~--~~p~~I~V~tTC~~-elIGDDi~~v~~~~~~~~--~~~~vi~v~tpgf~g~s~-- 175 (461)
T TIGR01860 104 SHVVFGGEKQLEKSIHEAFDE-F--PDIKRMIVYTTCPT-ALIGDDIKAVAKKVQKEL--PDVDIFTVECPGFAGVSQ-- 175 (461)
T ss_pred CceeeCcHHHHHHHHHHHHHh-C--CCCCEEEEEccCch-hhhcCCHHHHHHHHHHhc--CCCcEEEEeCCCcCCccc--
Confidence 334678899999999887554 2 3 345777775432 111233333333332332 135899999986642100
Q ss_pred CCCCCCCCCCCCHHHHHHHH-HHH--------HHcCCccEEEecCcc--HHHHHHHHHhcCCCCc
Q 035739 147 FPEPKEDLLPMDYRGVWEAM-EES--------QMLGLTKSIGLSNFS--RKKIETILTFATIPPS 200 (335)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~L-~~l--------~~~Gkir~iGvs~~~--~~~l~~~~~~~~~~~~ 200 (335)
......+.+++ +++ +..++|--||-.++. .+.+.++++..++.+.
T Consensus 176 ---------~~G~~~a~~~~~~~~v~~~~~~~~~~~~VNiiG~~~~~gd~~el~~lL~~~Gi~v~ 231 (461)
T TIGR01860 176 ---------SKGHHVLNIGWINEKVGTLEPEITSEYTINVIGDYNIQGDTQVLQKYWDKMGIQVI 231 (461)
T ss_pred ---------chHHHHHHHHHHHHHhcccCCCCCCCCcEEEECCCCCcccHHHHHHHHHHcCCcEE
Confidence 00112222221 211 224678888844433 4678888888876543
No 291
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=21.00 E-value=4.8e+02 Score=24.73 Aligned_cols=199 Identities=16% Similarity=0.176 Sum_probs=90.7
Q ss_pred ChHHHHHHHHHHHHcCCCEeeCCCCcC---CH---HHHHHHHHHHHHcCCCCCCCceEEeeccCCC-----CCChhhHHH
Q 035739 47 DTDALKLVVLEAIKLGYRHFDTAAMYG---TE---KALGEAIAEALRLGLVSSREQLFITSKLWCQ-----NAHRDHVIP 115 (335)
Q Consensus 47 ~~~~~~~~l~~A~~~Gin~~DtA~~Yg---se---~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~-----~~~~~~i~~ 115 (335)
+.++..+.|+.|.+.|++.+=|+=+.- .+ ..+.+.++.. ..-.+.|+.=+.+. ..+++.+
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a-------~~~~~~v~~Disp~~l~~lg~~~~dl-- 82 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLA-------KELGMEVIADISPKVLKKLGISYDDL-- 82 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHH-------HHCT-EEEEEE-CCHHHTTT-BTTBT--
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHH-------HHCCCEEEEECCHHHHHHcCCCHHHH--
Confidence 567888999999999999998886654 11 1222333322 34456666555332 1111222
Q ss_pred HHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCccHHHHHHHHHhc
Q 035739 116 ALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFSRKKIETILTFA 195 (335)
Q Consensus 116 ~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~ 195 (335)
..++.||++. +=|..- . ..+.+.+|-++|.--.+=.|+.+...++.+++..
T Consensus 83 ---~~~~~lGi~~---lRlD~G-------------------f----~~~~ia~ls~ng~~I~LNASti~~~~l~~L~~~~ 133 (357)
T PF05913_consen 83 ---SFFKELGIDG---LRLDYG-------------------F----SGEEIAKLSKNGIKIELNASTITEEELDELIKYG 133 (357)
T ss_dssp ---HHHHHHT-SE---EEESSS------------------------SCHHHHHHTTT-SEEEEETTT--CCHHHHHCCTT
T ss_pred ---HHHHHcCCCE---EEECCC-------------------C----CHHHHHHHHhCCCEEEEECCCCChHHHHHHHHhc
Confidence 2355666442 222211 0 1133444444466556777887777888776643
Q ss_pred CCCCc--cccCCCCccc-----cc--HHHHHHHHHcCCeEEEeccCCCCCCcCCCCccCC-hHHHHHHHHHhCCCHHHHH
Q 035739 196 TIPPS--INQVEMHPVW-----QQ--RKLIEFCKAKGIIVTAYSPLGAVGKIYGSNQVLE-NEALKEIAKARGKTVAQVS 265 (335)
Q Consensus 196 ~~~~~--~~q~~~~~~~-----~~--~~~l~~~~~~gi~v~a~~pl~~~G~l~~~~~~~~-~~~l~~la~~~g~s~~q~a 265 (335)
. .+. ..--+|.|.- .+ .+.-.+.++.||.+.|+-|-. +.+.|+ +.. -+++ ++|.--+..++
T Consensus 134 ~-~~~~i~a~HNfYPr~~TGLs~~~f~~~n~~~k~~gi~~~AFI~g~--~~~rGP--l~~GLPTl----E~hR~~~p~~a 204 (357)
T PF05913_consen 134 A-NFSNIIACHNFYPRPYTGLSEEFFIEKNQLLKEYGIKTAAFIPGD--ENKRGP--LYEGLPTL----EKHRNLPPYAA 204 (357)
T ss_dssp ---GGGEEEE---B-STT-SB-HHHHHHHHHHHHHTT-EEEEEE--S--SS-BTT--T-S--BSB----GGGTTS-HHHH
T ss_pred C-CHHHeEEEecccCCCCCCCCHHHHHHHHHHHHHCCCcEEEEecCC--CcccCC--ccCCCCcc----HHHcCCCHHHH
Confidence 2 111 1111222211 11 345677899999999987664 222222 100 0001 01222234456
Q ss_pred HHHHhhcC--CEEEeCCC--CHHHHHHhhcc
Q 035739 266 LRWIVEQG--ATVVIKSL--NLERMKQNLGI 292 (335)
Q Consensus 266 l~~~l~~~--~~vi~g~~--~~~~l~enl~a 292 (335)
.+.+...+ .-|++|=. +.++++....+
T Consensus 205 a~~L~~~~~iD~V~IGD~~~s~~el~~~~~~ 235 (357)
T PF05913_consen 205 ALELFALGLIDDVIIGDPFASEEELKQLAQY 235 (357)
T ss_dssp HHHHHHTTT--EEEE-SC---HHHHHHHHHC
T ss_pred HHHHHhcCCCCEEEECCCcCCHHHHHHHHHH
Confidence 67777776 78888865 44555554444
No 292
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=20.89 E-value=2e+02 Score=27.56 Aligned_cols=73 Identities=15% Similarity=0.188 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCceEEeeccCC----------CCCC----hhhHHHHHHHHHHHhCCCccceEEeecCCC
Q 035739 74 TEKALGEAIAEALRLGLVSSREQLFITSKLWC----------QNAH----RDHVIPALKKSLSALQMEYLDLYLVHWPIS 139 (335)
Q Consensus 74 se~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~----------~~~~----~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~ 139 (335)
++..|.+.++.. ...=+||-||+-. ..++ -+.|++.+.+.|++-|+....+|++.+.+.
T Consensus 129 ndv~La~~i~~~-------gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl 201 (376)
T PF05049_consen 129 NDVQLAKEIQRM-------GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDL 201 (376)
T ss_dssp HHHHHHHHHHHT-------T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTT
T ss_pred hhHHHHHHHHHc-------CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCc
Confidence 566778888874 4555678999831 1222 356788888999999999999999998753
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 035739 140 SKPGELGFPEPKEDLLPMDYRGVWEAMEE 168 (335)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 168 (335)
. ..++..+.++|++
T Consensus 202 ~---------------~yDFp~L~~tL~~ 215 (376)
T PF05049_consen 202 S---------------KYDFPKLEETLEK 215 (376)
T ss_dssp T---------------STTHHHHHHHHHH
T ss_pred c---------------cCChHHHHHHHHH
Confidence 2 3557667666653
No 293
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=20.67 E-value=4.3e+02 Score=22.23 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCccHHHHHHHHHhcCCC
Q 035739 159 YRGVWEAMEESQMLGLTKSIGLSNFSRKKIETILTFATIP 198 (335)
Q Consensus 159 ~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~ 198 (335)
..++.+.+++++++|. +-+=+||.+...+..+.+..+++
T Consensus 48 tpe~~~W~~e~k~~gi-~v~vvSNn~e~RV~~~~~~l~v~ 86 (175)
T COG2179 48 TPELRAWLAELKEAGI-KVVVVSNNKESRVARAAEKLGVP 86 (175)
T ss_pred CHHHHHHHHHHHhcCC-EEEEEeCCCHHHHHhhhhhcCCc
Confidence 5688999999999985 45678888877777777765543
No 294
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=20.66 E-value=7.1e+02 Score=23.39 Aligned_cols=74 Identities=16% Similarity=0.136 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHHcCCccEEEecCcc---HHHHHHHHHhcC-CCCccccCCCCcccccHHHHHHHHHcCCeEEEeccC
Q 035739 157 MDYRGVWEAMEESQMLGLTKSIGLSNFS---RKKIETILTFAT-IPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPL 232 (335)
Q Consensus 157 ~~~~~~~~~L~~l~~~Gkir~iGvs~~~---~~~l~~~~~~~~-~~~~~~q~~~~~~~~~~~~l~~~~~~gi~v~a~~pl 232 (335)
+..+++.+.++++.+.| ++.|.++.-. ..++.++++... ..+. +.+.-|...-..+.++..++.|+..+..|.-
T Consensus 46 ~~~e~~~~ii~~~~~~g-~~~v~~~GGEPll~~~~~~il~~~~~~g~~-~~i~TNG~ll~~~~~~~L~~~g~~~v~iSld 123 (378)
T PRK05301 46 LSTEEWIRVLREARALG-ALQLHFSGGEPLLRKDLEELVAHARELGLY-TNLITSGVGLTEARLAALKDAGLDHIQLSFQ 123 (378)
T ss_pred CCHHHHHHHHHHHHHcC-CcEEEEECCccCCchhHHHHHHHHHHcCCc-EEEECCCccCCHHHHHHHHHcCCCEEEEEec
Confidence 45667777777777766 5677776532 223445554432 1111 1122222222356777888888766555443
No 295
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.62 E-value=8e+02 Score=23.96 Aligned_cols=135 Identities=14% Similarity=0.183 Sum_probs=73.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecC--cc-----HHHHHHHHHhc-CCC--CccccCCCCcccccHHHHH
Q 035739 148 PEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSN--FS-----RKKIETILTFA-TIP--PSINQVEMHPVWQQRKLIE 217 (335)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~--~~-----~~~l~~~~~~~-~~~--~~~~q~~~~~~~~~~~~l~ 217 (335)
+.........+.+++.+.++.|.+.| ++.|-+.. ++ ...+.++++.. ... ..+.....++..-..++++
T Consensus 174 p~~rG~~rsr~~e~Iv~Ei~~l~~~G-~kei~l~~~~~~~y~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~ 252 (449)
T PRK14332 174 PYTRGRERSRDPKSIVREIQDLQEKG-IRQVTLLGQNVNSYKEQSTDFAGLIQMLLDETTIERIRFTSPHPKDFPDHLLS 252 (449)
T ss_pred ccccCCcccCCHHHHHHHHHHHHHCC-CeEEEEecccCCcccCCcccHHHHHHHHhcCCCcceEEEECCCcccCCHHHHH
Confidence 33444456677999999999999987 67775542 11 11244444322 111 1121222233333578999
Q ss_pred HHHHcCCe-EEEeccCCCCCCcCCCCccCChHHHHHHHHHhCCCHHHHHHHHHhhc-C-----CEEEeCC--CCHHHHHH
Q 035739 218 FCKAKGII-VTAYSPLGAVGKIYGSNQVLENEALKEIAKARGKTVAQVSLRWIVEQ-G-----ATVVIKS--LNLERMKQ 288 (335)
Q Consensus 218 ~~~~~gi~-v~a~~pl~~~G~l~~~~~~~~~~~l~~la~~~g~s~~q~al~~~l~~-~-----~~vi~g~--~~~~~l~e 288 (335)
..++.|.. -..+-|+-+ | .++.++.+.+.+...-..-+++++... | +..|+|. -+.+++++
T Consensus 253 ~m~~~~~~~~~l~lgvQS-g---------sd~vLk~m~R~~t~~~~~~~i~~lr~~~p~i~i~td~IvGfPgET~edf~~ 322 (449)
T PRK14332 253 LMAKNPRFCPNIHLPLQA-G---------NTRVLEEMKRSYSKEEFLDVVKEIRNIVPDVGITTDIIVGFPNETEEEFED 322 (449)
T ss_pred HHHhCCCccceEEECCCc-C---------CHHHHHhhCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEeeCCCCCHHHHHH
Confidence 99887731 122233332 2 345566665544333334455566554 2 3578884 57777777
Q ss_pred hhccc
Q 035739 289 NLGIF 293 (335)
Q Consensus 289 nl~a~ 293 (335)
.++.+
T Consensus 323 tl~~v 327 (449)
T PRK14332 323 TLAVV 327 (449)
T ss_pred HHHHH
Confidence 77654
No 296
>PLN02880 tyrosine decarboxylase
Probab=20.59 E-value=5.2e+02 Score=25.62 Aligned_cols=60 Identities=13% Similarity=0.057 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHHcCCccEEEecCccHHHHHHHHHhcCCCCccccCCCCcccccHHHHHHHHHcCCeEEEeccCCC
Q 035739 157 MDYRGVWEAMEESQMLGLTKSIGLSNFSRKKIETILTFATIPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYSPLGA 234 (335)
Q Consensus 157 ~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~gi~v~a~~pl~~ 234 (335)
++.+.+-+++++.+++|++-.+=|.+... +....++.-.++.+.|+++|+-+.+=..+++
T Consensus 221 md~~~L~~~i~~~~~~g~~p~~vvataGT------------------T~~GaiDpl~eI~~i~~~~~iwlHVDaA~gg 280 (490)
T PLN02880 221 LAPELLSEAISTDLSSGLIPFFLCATVGT------------------TSSTAVDPLLELGKIAKSNGMWFHVDAAYAG 280 (490)
T ss_pred CCHHHHHHHHHHHHHCCCccEEEEEecCC------------------CcCcccCcHHHHHHHHHHcCCEEEEehhhHH
Confidence 44566666666666666655544443320 1111222335677777777777777666654
No 297
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=20.57 E-value=5.3e+02 Score=24.11 Aligned_cols=61 Identities=10% Similarity=0.037 Sum_probs=39.1
Q ss_pred HHcCCccEEEecCccHHHHHHHHHhcC-----CCCccccCCCCcccccHHHHHHHHHcCCeEEEec
Q 035739 170 QMLGLTKSIGLSNFSRKKIETILTFAT-----IPPSINQVEMHPVWQQRKLIEFCKAKGIIVTAYS 230 (335)
Q Consensus 170 ~~~Gkir~iGvs~~~~~~l~~~~~~~~-----~~~~~~q~~~~~~~~~~~~l~~~~~~gi~v~a~~ 230 (335)
-+.|=+..||....+++++++.++..+ -++-++-+.+.+.....+.++.|.+.++.++..+
T Consensus 24 S~AGgLG~la~~~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~vi~e~~v~~V~~~ 89 (320)
T cd04743 24 AEGGGLPFIALALMRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQLAVVRAIKPTFALIA 89 (320)
T ss_pred HhCCccccCCCCCCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHHHHHHhcCCcEEEEc
Confidence 345777888888888888877765432 2333333222211113578999999999988764
No 298
>PRK08123 histidinol-phosphatase; Reviewed
Probab=20.56 E-value=6.2e+02 Score=22.63 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHcCCCEeeCCCC
Q 035739 49 DALKLVVLEAIKLGYRHFDTAAM 71 (335)
Q Consensus 49 ~~~~~~l~~A~~~Gin~~DtA~~ 71 (335)
+.+.+.+++|.+.|+..|=.+++
T Consensus 19 ~~~e~~v~~Ai~~Gl~~i~~tdH 41 (270)
T PRK08123 19 DDLEAYIERAIELGFTEITFTEH 41 (270)
T ss_pred CCHHHHHHHHHHcCCcEEEEecc
Confidence 34689999999999998755544
No 299
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=20.51 E-value=4.8e+02 Score=22.40 Aligned_cols=53 Identities=21% Similarity=0.221 Sum_probs=33.2
Q ss_pred hhhHHHHHHHHHHHhCCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCcc
Q 035739 110 RDHVIPALKKSLSALQMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFS 184 (335)
Q Consensus 110 ~~~i~~~~e~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~ 184 (335)
...+.+.+++.++.+|.+. .++ .+. ..+.....+.++++.++| +..|=++..+
T Consensus 13 ~~~~~~g~~~~a~~~g~~~-~~~---~~~-----------------~~d~~~q~~~i~~~i~~~-~d~Iiv~~~~ 65 (257)
T PF13407_consen 13 WQQVIKGAKAAAKELGYEV-EIV---FDA-----------------QNDPEEQIEQIEQAISQG-VDGIIVSPVD 65 (257)
T ss_dssp HHHHHHHHHHHHHHHTCEE-EEE---EES-----------------TTTHHHHHHHHHHHHHTT-ESEEEEESSS
T ss_pred HHHHHHHHHHHHHHcCCEE-EEe---CCC-----------------CCCHHHHHHHHHHHHHhc-CCEEEecCCC
Confidence 3567888888888888532 222 111 122567778888887776 6666665554
No 300
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=20.41 E-value=8.2e+02 Score=24.00 Aligned_cols=115 Identities=10% Similarity=0.066 Sum_probs=58.6
Q ss_pred CCChHHHHHHHHHHHHcCCCEeeCCCCcCCHHHHHHHHHHHHHcCCCCCCCceEEeeccCCCCCChhhHHHHHHHHHHHh
Q 035739 45 KSDTDALKLVVLEAIKLGYRHFDTAAMYGTEKALGEAIAEALRLGLVSSREQLFITSKLWCQNAHRDHVIPALKKSLSAL 124 (335)
Q Consensus 45 ~~~~~~~~~~l~~A~~~Gin~~DtA~~Ygse~~lG~~l~~~~~~g~~~~R~~~~i~tK~~~~~~~~~~i~~~~e~sL~~L 124 (335)
+.+++-..+.++.|.++|+..|-....-.....+-++++..-..|. .-++.|+.=.. +.++.+.+.+-+++ +..+
T Consensus 92 ~~pddvv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~---~v~~~i~~t~~-p~~~~~~~~~~a~~-l~~~ 166 (448)
T PRK12331 92 NYADDVVESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGG---HAQVAISYTTS-PVHTIDYFVKLAKE-MQEM 166 (448)
T ss_pred cCchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCC---eEEEEEEeecC-CCCCHHHHHHHHHH-HHHc
Confidence 3455667778899999998866544333211223334433322242 11233333222 23455666555544 4567
Q ss_pred CCCccceEEeecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccEEEecCcc
Q 035739 125 QMEYLDLYLVHWPISSKPGELGFPEPKEDLLPMDYRGVWEAMEESQMLGLTKSIGLSNFS 184 (335)
Q Consensus 125 g~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~ 184 (335)
|. |.+.|-.... ...+.++.+.+..+++.=. .-|++-.|+
T Consensus 167 Ga---d~I~i~Dt~G----------------~l~P~~v~~lv~alk~~~~-~pi~~H~Hn 206 (448)
T PRK12331 167 GA---DSICIKDMAG----------------ILTPYVAYELVKRIKEAVT-VPLEVHTHA 206 (448)
T ss_pred CC---CEEEEcCCCC----------------CCCHHHHHHHHHHHHHhcC-CeEEEEecC
Confidence 75 4455553322 2335566666666665422 347777765
No 301
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=20.40 E-value=7.4e+02 Score=23.48 Aligned_cols=53 Identities=11% Similarity=0.093 Sum_probs=34.1
Q ss_pred cCccHHHHHHHHHhcCCCCccccCCCCccccc---HHHHHHHHHcCCeEEEeccCCC
Q 035739 181 SNFSRKKIETILTFATIPPSINQVEMHPVWQQ---RKLIEFCKAKGIIVTAYSPLGA 234 (335)
Q Consensus 181 s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~~l~~~~~~gi~v~a~~pl~~ 234 (335)
...+.+.+++++.. +.+.+++..+.|+.... .++.+.|+++|+.++.=..++.
T Consensus 132 d~~d~e~l~~~i~~-~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~ 187 (388)
T PRK07811 132 DLSDLDAVRAAITP-RTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFAS 187 (388)
T ss_pred CCCCHHHHHHhcCc-CCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCc
Confidence 33456667666542 33445555666664332 6788999999999887766554
No 302
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=20.21 E-value=1.3e+02 Score=20.70 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHHcCCccEEEecCc
Q 035739 158 DYRGVWEAMEESQMLGLTKSIGLSNF 183 (335)
Q Consensus 158 ~~~~~~~~L~~l~~~Gkir~iGvs~~ 183 (335)
+...+-..|+.|.++|+|+.+...+.
T Consensus 27 s~~~ve~mL~~l~~kG~I~~~~~~~~ 52 (69)
T PF09012_consen 27 SPEAVEAMLEQLIRKGYIRKVDMSSC 52 (69)
T ss_dssp -HHHHHHHHHHHHCCTSCEEEEEE--
T ss_pred CHHHHHHHHHHHHHCCcEEEecCCCC
Confidence 36677888999999999999887665
No 303
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=20.01 E-value=3e+02 Score=24.29 Aligned_cols=29 Identities=10% Similarity=0.120 Sum_probs=22.6
Q ss_pred CCCChHHHHHHHHHHHHcCCCEeeCCCCc
Q 035739 44 DKSDTDALKLVVLEAIKLGYRHFDTAAMY 72 (335)
Q Consensus 44 ~~~~~~~~~~~l~~A~~~Gin~~DtA~~Y 72 (335)
++.+.++..++++.|.+.||+-+=..++|
T Consensus 15 Gp~s~eesl~ml~~A~~qGvt~iVaTsHh 43 (254)
T COG4464 15 GPKSLEESLAMLREAVRQGVTKIVATSHH 43 (254)
T ss_pred CCCcHHHHHHHHHHHHHcCceEEeecccc
Confidence 34477889999999999999966544454
No 304
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=20.00 E-value=49 Score=29.35 Aligned_cols=67 Identities=16% Similarity=0.160 Sum_probs=35.9
Q ss_pred ceEEc-CCCCCCccCCcceeeCcccCccc------c----ccCCCChHHHHHHHHHHHHcCCCEeeCCCCcCCHHHHHHH
Q 035739 13 PKLKL-SSSSGHLNMPVIGLGCAVDKCLR------C----AVDKSDTDALKLVVLEAIKLGYRHFDTAAMYGTEKALGEA 81 (335)
Q Consensus 13 ~~~~l-g~t~g~~~vs~lg~G~~~~~~~~------~----~~~~~~~~~~~~~l~~A~~~Gin~~DtA~~Ygse~~lG~~ 81 (335)
+..++ |+. . -.|.++++.+...+... + -.+.. -......|.+.|+++||.. ||.+|...=+.
T Consensus 158 ~~vr~~g~~-~-~~v~rVav~~GsG~~~i~~a~~~g~D~~ITGd~----~~h~~~~a~~~g~~lI~~g-H~~sE~~~~~~ 230 (241)
T PF01784_consen 158 PGVRVVGDP-D-KKVKRVAVCGGSGGSFIEEAAEAGADVYITGDI----KYHDAQDAKENGINLIDAG-HYASERPGMEA 230 (241)
T ss_dssp S-EEEESCT-T-SEEEEEEEECSSSGGGHHHHHHTTSSEEEESS------HHHHHHHHHCTSEEEE---HHHHGGHHHHH
T ss_pred CcEEecCCC-C-CcccEEEEEcccCccHHHHHHhCCCeEEEEccC----cHHHHHHHHHCCCEEEEcC-CHHHHHHHHHH
Confidence 33444 353 4 78888887765543210 0 00111 2234466788899999977 88777765555
Q ss_pred HHHHH
Q 035739 82 IAEAL 86 (335)
Q Consensus 82 l~~~~ 86 (335)
|.+++
T Consensus 231 l~~~L 235 (241)
T PF01784_consen 231 LAEWL 235 (241)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
Done!