Your job contains 1 sequence.
>035741
MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFI
KCLARERLSYGNSFLKASSAKRRTPHFAKRTPHYKLGGDLKLNFGCQISKDKFSVFWSQE
NVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSGHSVSIGQSSAICLELPS
RALIPKALKDFFHYKESLVQFTLLPGFVFSCNSDLNQDGKHALEMLFHLRECCYDPVSWL
REQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEID
NFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFS
NSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSNI
GKISAELAETVAKKCGYAIYTPSAFQIRYGGYKVTLRNNMFKYKSESTSLDILANSKYQR
EGVARLRLDNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPD
AEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQGLMVVAKKPCLH
PGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQF
QPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPD
LVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPS
TTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEM
LSRCIMEMAKSFDKKRDLEAISFSVRSLRKEARAWFNKKKNDSDSSHKDV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 035741
(890 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2006822 - symbol:RDR1 "AT1G14790" species:3702... 904 2.6e-232 5
TAIR|locus:2114633 - symbol:RDR6 "AT3G49500" species:3702... 594 1.9e-98 4
TAIR|locus:2136068 - symbol:RDR2 "RNA-dependent RNA polym... 552 1.7e-95 4
UNIPROTKB|Q8LHH9 - symbol:SHL2 "Probable RNA-dependent RN... 602 5.3e-78 2
UNIPROTKB|G4NJ50 - symbol:MGG_02748 "RNA-dependent RNA po... 385 4.9e-64 3
POMBASE|SPAC6F12.09 - symbol:rdp1 "RNA-directed RNA polym... 375 1.7e-55 3
WB|WBGene00004510 - symbol:rrf-3 species:6239 "Caenorhabd... 328 3.6e-47 3
WB|WBGene00001214 - symbol:ego-1 species:6239 "Caenorhabd... 352 7.1e-43 4
WB|WBGene00004509 - symbol:rrf-2 species:6239 "Caenorhabd... 347 2.2e-41 5
WB|WBGene00004508 - symbol:rrf-1 species:6239 "Caenorhabd... 347 2.5e-41 4
ASPGD|ASPL0000040001 - symbol:rrpC species:162425 "Emeric... 223 1.0e-27 2
DICTYBASE|DDB_G0289659 - symbol:rrpA "RNA-directed RNA po... 261 1.3e-23 3
DICTYBASE|DDB_G0291249 - symbol:rrpB "RNA-directed RNA po... 257 9.0e-23 3
ASPGD|ASPL0000071805 - symbol:rrpB species:162425 "Emeric... 203 3.4e-21 3
DICTYBASE|DDB_G0280963 - symbol:rrpC "RNA-directed RNA po... 157 1.4e-14 3
TAIR|locus:2052020 - symbol:AT2G19930 species:3702 "Arabi... 122 4.5e-06 3
TAIR|locus:2052030 - symbol:AT2G19920 species:3702 "Arabi... 120 1.2e-05 3
TAIR|locus:2052040 - symbol:AT2G19910 species:3702 "Arabi... 117 6.1e-05 3
>TAIR|locus:2006822 [details] [associations]
symbol:RDR1 "AT1G14790" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0016441
"posttranscriptional gene silencing" evidence=ISS] [GO:0009615
"response to virus" evidence=IMP] [GO:0009751 "response to
salicylic acid stimulus" evidence=IEP] [GO:0060148 "positive
regulation of posttranscriptional gene silencing" evidence=IMP]
[GO:0000165 "MAPK cascade" evidence=RCA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0006612 "protein
targeting to membrane" evidence=RCA] [GO:0009617 "response to
bacterium" evidence=RCA] [GO:0009862 "systemic acquired resistance,
salicylic acid mediated signaling pathway" evidence=RCA]
[GO:0009867 "jasmonic acid mediated signaling pathway"
evidence=RCA] [GO:0010310 "regulation of hydrogen peroxide
metabolic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA] [GO:0031348
"negative regulation of defense response" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA] [GO:0010025
"wax biosynthetic process" evidence=IGI] InterPro:IPR007855
Pfam:PF05183 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006952
GO:GO:0010025 GO:GO:0009751 GO:GO:0003723 GO:GO:0009615
GO:GO:0031047 EMBL:AC006917 UniGene:At.70434 GO:GO:0003968
EMBL:AY148431 EMBL:AK228731 EMBL:AJ011977 IPI:IPI00542699
RefSeq:NP_172932.1 UniGene:At.27823 ProteinModelPortal:Q9LQV2
SMR:Q9LQV2 STRING:Q9LQV2 PaxDb:Q9LQV2 PRIDE:Q9LQV2
EnsemblPlants:AT1G14790.1 GeneID:838044 KEGG:ath:AT1G14790
TAIR:At1g14790 eggNOG:NOG307726 HOGENOM:HOG000239464
InParanoid:Q9LQV2 KO:K11699 OMA:YEDYITE PhylomeDB:Q9LQV2
ProtClustDB:CLSN2682981 Genevestigator:Q9LQV2 GO:GO:0060148
PANTHER:PTHR23079 Uniprot:Q9LQV2
Length = 1107
Score = 904 (323.3 bits), Expect = 2.6e-232, Sum P(5) = 2.6e-232
Identities = 178/288 (61%), Positives = 213/288 (73%)
Query: 589 GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFV 648
G +VVAK PCLHPGD+RVL+AV+VPAL+HMVDCV+FP KG RPH NECSGSD DG+IYFV
Sbjct: 746 GPVVVAKNPCLHPGDVRVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFV 805
Query: 649 CWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYS 708
CWD + +PP +P YTP P +IL DVTIE+VEEYFA+YIVNDSLGII NAH +A
Sbjct: 806 CWDQELVPPRTSEPMDYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADK 865
Query: 709 EPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVG 768
EP KA S+ C +L K S DF KTGVAA IP L VK YPDFMEK DK YES++++G
Sbjct: 866 EPLKAFSDPCIELAKKFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIG 925
Query: 769 NLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNL 828
L+REV AP +IKSF + A + YD DMEV+GF+E + F + YD KLGNL
Sbjct: 926 KLFREVKERAPPLISIKSFTLDVASKSYDKDMEVDGFEEYVDE--AFYQKANYDFKLGNL 983
Query: 829 MDYYGIKTEAEMLSRCIMEMAKSFDKKRDLEAISFSVRSLRKEARAWF 876
MDYYGIKTEAE+LS IM M+KSF K+RD E+I +VR+LRKE + F
Sbjct: 984 MDYYGIKTEAEILSGGIMRMSKSFTKRRDAESIGRAVRALRKETLSLF 1031
Score = 633 (227.9 bits), Expect = 2.6e-232, Sum P(5) = 2.6e-232
Identities = 122/199 (61%), Positives = 157/199 (78%)
Query: 221 HALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYF 280
H LE LFHL ECCY+P WLR++Y+K +S G+ P SP ++LD GL+Y+ ++ VTP++VYF
Sbjct: 320 HCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQVTPARVYF 379
Query: 281 CGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVL 340
GPE+++SNRV+R Y I+NFLR+SFVDEDL K+ S LSP+ SST +RRT++Y+R+
Sbjct: 380 SGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMDLSPR-SST--QRRTKLYDRIY 436
Query: 341 STLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYA 400
S LR+GIVIGDKKFE LAFS+SQ REN+ WMFA +TAA IR MGDF I+NV KYA
Sbjct: 437 SVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDRITAAHIRAWMGDFDHIRNVAKYA 496
Query: 401 ARLGQSFASSREALHVDSN 419
ARLGQSF+SSRE L+V S+
Sbjct: 497 ARLGQSFSSSRETLNVRSD 515
Score = 419 (152.6 bits), Expect = 2.6e-232, Sum P(5) = 2.6e-232
Identities = 97/177 (54%), Positives = 119/177 (67%)
Query: 453 KVTLRNNMFKYKSESTSLDILANSKYQ-----REGVARLRL----DNVFERKQREVVARL 503
K++LR +M K++SE+T LD+LA SKYQ R+ + L D+VFE+KQREVV RL
Sbjct: 583 KLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRL 642
Query: 504 DAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTR 563
DAILT + EAL LM+ ENTN+LK L+ CGYKPDAEPFLSMM Q F AS LLELRT+
Sbjct: 643 DAILTHPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTK 702
Query: 564 ARIFIQNGQAMMGCLDEKGTLEYGQGLMVVAKKPCLHPGDMRVLRAVDV----PALH 616
RIFI G++MMGCLDE TLEYGQ +VV + PG ++ V P LH
Sbjct: 703 TRIFISGGRSMMGCLDETRTLEYGQ--VVVQYSDPMRPGRRFIITGPVVVAKNPCLH 757
Score = 270 (100.1 bits), Expect = 2.6e-232, Sum P(5) = 2.6e-232
Identities = 65/167 (38%), Positives = 88/167 (52%)
Query: 1 MAKMIMLYGFASLASPKAVKEFLXXXXXXXXXXXXXXXQNK--GSRAHAIVEFTTVEAAD 58
M K I ++GF + S + VK+FL Q K G R +AIV+FT+
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60
Query: 59 FIKCLARERLSYGNSFLKASSAKRRTPHFAKRTPHYKLGGDLKLNFGCQISKDKFSVFWS 118
I A ERL YG S+LKA ++ + + H + G LK+ FGCQ+S KF WS
Sbjct: 61 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLH-TISG-LKMFFGCQVSTKKFLTLWS 118
Query: 119 QENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSGHS 165
++V V +RK F S+ DY+LELS E+IWQI+LH P G S
Sbjct: 119 AQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRS 165
Score = 177 (67.4 bits), Expect = 7.4e-207, Sum P(5) = 7.4e-207
Identities = 40/72 (55%), Positives = 50/72 (69%)
Query: 420 IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK------------VTLRNNMFKYKSES 467
IGKISAE A VA+KCG ++PSAFQIRYGGYK ++LR +M K++SE+
Sbjct: 538 IGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFESEN 597
Query: 468 TSLDILANSKYQ 479
T LD+LA SKYQ
Sbjct: 598 TKLDVLAWSKYQ 609
Score = 78 (32.5 bits), Expect = 2.6e-232, Sum P(5) = 2.6e-232
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 165 SVSIGQSSAICLELPSRALIPKALKDFFHYKESLVQ-FTLLPGFVFSCNSD 214
S IGQS+A CLELP +P ++F +Y E F + G +S N++
Sbjct: 214 SSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFLIESGSSYSSNAN 264
Score = 51 (23.0 bits), Expect = 2.6e-94, Sum P(4) = 2.6e-94
Identities = 26/109 (23%), Positives = 52/109 (47%)
Query: 402 RLGQSFASSREALHVDSNIGK-ISAELAETVAK-KCGYAIYTPSAFQIRYGGYKVTLRNN 459
R+ +SF R+A +IG+ + A ET++ SA + Y VT ++
Sbjct: 1002 RMSKSFTKRRDA----ESIGRAVRALRKETLSLFNASEEEENESAKASAW--YHVTYHSS 1055
Query: 460 MFKYKSESTSLD-ILANSKYQREGVARLRLDNVFERKQREVVARLDAIL 507
+ +E + D L+ + + + R++ N+ R+++E + RLD +L
Sbjct: 1056 YWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRRQRQETLERLDHVL 1104
>TAIR|locus:2114633 [details] [associations]
symbol:RDR6 "AT3G49500" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0016441
"posttranscriptional gene silencing" evidence=TAS] [GO:0030422
"production of siRNA involved in RNA interference" evidence=TAS]
[GO:0048366 "leaf development" evidence=IGI] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=IMP] [GO:0051607 "defense response to virus" evidence=IMP]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IMP] [GO:0009616 "virus induced gene silencing"
evidence=IMP] [GO:0031047 "gene silencing by RNA" evidence=IMP]
[GO:0048440 "carpel development" evidence=IGI] [GO:0048467
"gynoecium development" evidence=IMP] [GO:0048544 "recognition of
pollen" evidence=IMP] InterPro:IPR007855 Pfam:PF05183 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AC012329 GO:GO:0003723
GO:GO:0048440 GO:GO:0048366 GO:GO:0010492 GO:GO:0010267
GO:GO:0048544 GO:GO:0003887 GO:GO:0009616 EMBL:AL132964
GO:GO:0003968 eggNOG:NOG307726 HOGENOM:HOG000239464 KO:K11699
ProtClustDB:CLSN2682981 PANTHER:PTHR23079 EMBL:AF239718
EMBL:AF268093 IPI:IPI00524423 RefSeq:NP_190519.1 UniGene:At.65263
ProteinModelPortal:Q9SG02 SMR:Q9SG02 MINT:MINT-7014695
STRING:Q9SG02 PaxDb:Q9SG02 PRIDE:Q9SG02 EnsemblPlants:AT3G49500.1
GeneID:824112 KEGG:ath:AT3G49500 TAIR:At3g49500 InParanoid:Q9SG02
OMA:SCAEQGN PhylomeDB:Q9SG02 Genevestigator:Q9SG02 Uniprot:Q9SG02
Length = 1196
Score = 594 (214.2 bits), Expect = 1.9e-98, Sum P(4) = 1.9e-98
Identities = 128/303 (42%), Positives = 176/303 (58%)
Query: 579 DEKGTLEYGQGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSG 638
+ K LE +G + +AK PCLHPGD+R+L AVDVP LHHM DC++FP KG+RPHTNE SG
Sbjct: 802 ETKTDLEVVKGYVAIAKNPCLHPGDVRILEAVDVPQLHHMYDCLIFPQKGDRPHTNEASG 861
Query: 639 SDQDGEIYFVCWDHDRIPPLQ--FQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLG 696
SD DG++YFV WD IPP + + Y A EK L R V +D+ ++FA + N+ LG
Sbjct: 862 SDLDGDLYFVAWDQKLIPPNRKSYPAMHYDAAEEKSLGRAVNHQDIIDFFARNLANEQLG 921
Query: 697 IICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQ 756
ICNAHVV+A AM C L +L++ DF KTG ++P L+ K+YPDFM K+
Sbjct: 922 TICNAHVVHADRSEYGAMDEECLLLAELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKE 981
Query: 757 DKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQF-YDTDMEVNGFKEVAMQFDGF 815
D Y+S I+G LYR V + S YD +E+ GF+++ + G
Sbjct: 982 DYQTYKSNKILGRLYRRVKEVYDEDAEASSEESTDPSAIPYDAVLEIPGFEDLIPEAWGH 1041
Query: 816 KYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKR-DL-EAISFSVRSLRKEAR 873
K YD +L L+ Y ++ E E+++ I M K KK+ +L E + S SL+KE R
Sbjct: 1042 KCL--YDGQLIGLLGQYKVQKEEEIVTGHIWSMPKYTSKKQGELKERLKHSYNSLKKEFR 1099
Query: 874 AWF 876
F
Sbjct: 1100 KVF 1102
Score = 257 (95.5 bits), Expect = 1.9e-98, Sum P(4) = 1.9e-98
Identities = 56/156 (35%), Positives = 96/156 (61%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLS----P- 322
+ ++++TP++ Y PE+ LSNRV+R Y + FLR++F+DE + + S VLS P
Sbjct: 411 IRRLVITPTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPI 470
Query: 323 --QISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTA 380
++S++ ++T +++RV S L +G + +K+ LAFS +Q R+ + W FA +
Sbjct: 471 VKDLTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRV 530
Query: 381 ADIRERMGDFREIKNVTKYAARLGQSFASSREALHV 416
+DI+ MG F++ KNV K AAR+G F+S+ + V
Sbjct: 531 SDIKTWMGKFKD-KNVAKCAARMGLCFSSTYATVDV 565
Score = 206 (77.6 bits), Expect = 1.9e-98, Sum P(4) = 1.9e-98
Identities = 53/154 (34%), Positives = 87/154 (56%)
Query: 451 GYKVTLRNNMFKYKSESTSLDILANSKYQ-----REGVARLRL----DNVFERKQREVVA 501
G ++ LR++M K+ S+ T L+I + +++Q R+ + L + D +F Q ++
Sbjct: 634 GIRLALRDSMKKFFSKHTILEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLY 693
Query: 502 RLDAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELR 561
+L+ IL D+ E L S AE N +L+ G+KP EP L M + + L LR
Sbjct: 694 KLNRILDDTDVAFEVLTA-SCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLR 752
Query: 562 TRARIFIQNGQAMMGCLDEKGTLEYGQGLMVVAK 595
++RIF+ +G+ +MGCLDE G LE+GQ + V+K
Sbjct: 753 EKSRIFVTSGRWLMGCLDEAGILEHGQCFIQVSK 786
Score = 85 (35.0 bits), Expect = 8.7e-86, Sum P(4) = 8.7e-86
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 420 IGKISAELAETVAKKCGYAI-YTPSAFQIRYGGYK--------------VTLRNNMFKYK 464
IG I+ +LA+ V +K + Y+P A+QIRY G+K + LR++M K+
Sbjct: 588 IGTITPDLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFF 647
Query: 465 SESTSLDILANSKYQ 479
S+ T L+I + +++Q
Sbjct: 648 SKHTILEICSWTRFQ 662
Score = 70 (29.7 bits), Expect = 1.9e-98, Sum P(4) = 1.9e-98
Identities = 26/81 (32%), Positives = 33/81 (40%)
Query: 46 HAIVEFTTVEAADFIKCLARE-RLSYGNSFLKASSAKRRTPHFAKR---TPHYKLGGDLK 101
HA V F E+A A + L LK S + +R T YKL G +
Sbjct: 78 HAFVHFAVFESAGRAMDAAGQCNLILDGQPLKVSLGPKNPYSLNQRRRTTVPYKLAG-IT 136
Query: 102 LNFGCQISKDKFSVFWSQENV 122
L G +S+D F V W E V
Sbjct: 137 LEIGTLVSRDDFFVSWRAEGV 157
>TAIR|locus:2136068 [details] [associations]
symbol:RDR2 "RNA-dependent RNA polymerase 2" species:3702
"Arabidopsis thaliana" [GO:0003968 "RNA-directed RNA polymerase
activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0016441 "posttranscriptional gene silencing" evidence=ISS]
[GO:0009751 "response to salicylic acid stimulus" evidence=IEP]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA;IMP] [GO:0016458 "gene silencing" evidence=IMP]
[GO:0007267 "cell-cell signaling" evidence=RCA;IMP] [GO:0016246
"RNA interference" evidence=RCA;IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0010495 "long-distance posttranscriptional gene
silencing" evidence=IMP] [GO:0050832 "defense response to fungus"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0010014 "meristem initiation" evidence=RCA]
[GO:0010073 "meristem maintenance" evidence=RCA] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0016569 "covalent chromatin modification"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0043687 "post-translational protein
modification" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] InterPro:IPR007855
Pfam:PF05183 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161531
GO:GO:0005730 GO:GO:0050832 GO:GO:0007267 GO:GO:0003723
GO:GO:0030422 EMBL:AF080120 EMBL:AL049876 GO:GO:0010495
GO:GO:0003968 HOGENOM:HOG000239464 KO:K11699
ProtClustDB:CLSN2682981 PANTHER:PTHR23079 IPI:IPI00535843
PIR:T01920 RefSeq:NP_192851.1 UniGene:At.43417
ProteinModelPortal:O82504 SMR:O82504 STRING:O82504 PaxDb:O82504
PRIDE:O82504 EnsemblPlants:AT4G11130.1 GeneID:826714
KEGG:ath:AT4G11130 TAIR:At4g11130 eggNOG:NOG252917
InParanoid:O82504 OMA:SKCAARM PhylomeDB:O82504
Genevestigator:O82504 Uniprot:O82504
Length = 1133
Score = 552 (199.4 bits), Expect = 1.7e-95, Sum P(4) = 1.7e-95
Identities = 123/322 (38%), Positives = 185/322 (57%)
Query: 562 TRARIFIQNGQAMMGCLDEKGTLEYGQGLMVVAKKPCLHPGDMRVLRAVDVPALHHM--V 619
T+A + ++ Q+ +DE+ ++ G+ +VV K PCLHPGD+RVL A+ +
Sbjct: 753 TKAELKSRD-QSYFRKIDEETSVVIGK--VVVTKNPCLHPGDIRVLDAIYEVHFEEKGYL 809
Query: 620 DCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTI 679
DC++FP KGERPH NECSG D DG+ +FV WD IP P Y + +++ DVT+
Sbjct: 810 DCIIFPQKGERPHPNECSGGDLDGDQFFVSWDEKIIPSEMDPPMDYAGSRPRLMDHDVTL 869
Query: 680 EDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAAT 739
E++ ++F DY+++D+LG+I AH+V+A +P+KA S +C +L L S DF+KTG A
Sbjct: 870 EEIHKFFVDYMISDTLGVISTAHLVHADRDPEKARSQKCLELANLHSRAVDFAKTGAPAE 929
Query: 740 IPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTD 799
+P L+ + +PDF+E+ +K Y S+ + G LYR V S K A+ YD
Sbjct: 930 MPYALKPREFPDFLERFEKPTYISESVFGKLYRAVKS---SLAQRKPEAESEDTVAYDVT 986
Query: 800 MEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIM--EMAKSFDKKR- 856
+E GF+ +R Y KL +LM YYG E E+L+ + EM + D +R
Sbjct: 987 LEEAGFESFIETAKA--HRDMYGEKLTSLMIYYGAANEEEILTGILKTKEMYLARDNRRY 1044
Query: 857 -DL-EAISFSVRSLRKEARAWF 876
D+ + I+ SV+ L KEA WF
Sbjct: 1045 GDMKDRITLSVKDLHKEAMGWF 1066
Score = 382 (139.5 bits), Expect = 1.7e-95, Sum P(4) = 1.7e-95
Identities = 85/200 (42%), Positives = 126/200 (63%)
Query: 223 LEMLFHLRECCYDPVSWLREQYRKHVSSGQF-PTSPAVAL-DGGLIYVNKILVTPSKVYF 280
L+ L CYDPV +++ Q + V + P S L + ++ + VTPSK+Y
Sbjct: 334 LKKLHQQSSICYDPVFFVKTQMQSVVKKMKHSPASAYKRLTEQNIMSCQRAYVTPSKIYL 393
Query: 281 CGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNG----ERRTRIY 336
GPE+ +N VV+++ + + +F+R++FV+ED KL + LS ++S G RT IY
Sbjct: 394 LGPELETANYVVKNFAEHVSDFMRVTFVEEDWSKLPANALS--VNSKEGYFVKPSRTNIY 451
Query: 337 ERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNV 396
RVLS L GI +G K+FE LAFS SQ R N++WMFAS ++ A DIRE MG FR+I+++
Sbjct: 452 NRVLSILGEGITVGPKRFEFLAFSASQLRGNSVWMFASNEKVKAEDIREWMGCFRKIRSI 511
Query: 397 TKYAARLGQSFASSREALHV 416
+K AAR+GQ F++SR+ L V
Sbjct: 512 SKCAARMGQLFSASRQTLIV 531
Score = 219 (82.2 bits), Expect = 2.9e-50, Sum P(3) = 2.9e-50
Identities = 56/169 (33%), Positives = 89/169 (52%)
Query: 453 KVTLRNNMFKYKSESTSLDILANSK-----YQREGVARLRL----DNVFERKQREVVARL 503
K++LR++M K+ S + L++ ++ RE + L D +FE Q ++ L
Sbjct: 601 KLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSML 660
Query: 504 DAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTR 563
+L D L+ +S + N+L ++L GY P +EP+LSMM + H S L EL++R
Sbjct: 661 GNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSR 720
Query: 564 ARIFIQNGQAMMGCLDEKGTLEYGQGLM-VVAKKPCLHPGDMRVLRAVD 611
RI + G+ ++GC+DE G LEYGQ + V K L D R +D
Sbjct: 721 CRILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKID 769
Score = 118 (46.6 bits), Expect = 1.7e-95, Sum P(4) = 1.7e-95
Identities = 29/65 (44%), Positives = 41/65 (63%)
Query: 420 IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK------------VTLRNNMFKYKSES 467
IGKIS A+ VA+KCG + + PSAFQIRYGGYK ++LR++M K+ S +
Sbjct: 557 IGKISLAFAKQVAQKCGLS-HVPSAFQIRYGGYKGVIAVDRSSFRKLSLRDSMLKFDSNN 615
Query: 468 TSLDI 472
L++
Sbjct: 616 RMLNV 620
Score = 58 (25.5 bits), Expect = 1.7e-95, Sum P(4) = 1.7e-95
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 162 SGHSVSIGQSSAICLELPSRALIPKALKDFFHYKESLVQFTLLPGFVFS 210
SG S SIG S+ CLE+ + + + +Y+E + T + G F+
Sbjct: 226 SG-SKSIGTSTCFCLEVHNGSTMLDIFSGLPYYREDTLSLTYVDGKTFA 273
Score = 40 (19.1 bits), Expect = 1.5e-49, Sum P(2) = 1.5e-49
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 467 STSLDILANSKYQREGVARLR-LDNVFERKQREVVARLDAIL 507
ST LDI + Y RE L +D ++V L+A +
Sbjct: 245 STMLDIFSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAI 286
>UNIPROTKB|Q8LHH9 [details] [associations]
symbol:SHL2 "Probable RNA-dependent RNA polymerase SHL2"
species:39947 "Oryza sativa Japonica Group" [GO:0010492
"maintenance of shoot apical meristem identity" evidence=IMP]
[GO:0016246 "RNA interference" evidence=IMP] InterPro:IPR007855
Pfam:PF05183 GO:GO:0005634 GO:GO:0016246 GO:GO:0003723
GO:GO:0048440 GO:GO:0048366 GO:GO:0010492 GO:GO:0010267
EMBL:AP008207 GO:GO:0048544 GO:GO:0009616 GO:GO:0003968
eggNOG:NOG307726 HOGENOM:HOG000239464 PANTHER:PTHR23079 OMA:SCAEQGN
EMBL:AB353923 EMBL:AP004357 RefSeq:NP_001043229.1 UniGene:Os.30747
EnsemblPlants:LOC_Os01g34350.1 GeneID:4323938 Gramene:Q8LHH9
ProtClustDB:CLSN2691477 BRENDA:2.7.7.48 Uniprot:Q8LHH9
Length = 1218
Score = 602 (217.0 bits), Expect = 5.3e-78, Sum P(2) = 5.3e-78
Identities = 151/428 (35%), Positives = 231/428 (53%)
Query: 455 TLRNNMFKYKSE-STSLDILANSKYQREGVARLRLDNVFE-RKQREVVARLDAILTDSSK 512
T+ +N+ S+ + ++L S A L L FE R + + A L AI S++
Sbjct: 714 TMLSNLNNILSDRDVAFEVLTTSCADDGNTAALMLSAGFEPRTEPHLKAMLLAIR--SAQ 771
Query: 513 VQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQ 572
+Q+ LE + L+ C D L Q F + + L + F+++G
Sbjct: 772 LQDLLEKARIFVPKG--RWLMGC---LDELGVLEQ-GQCFIRATVPSLNS---YFVKHGS 822
Query: 573 AMMGCLDEKGTLEYGQGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPH 632
+K T E G +V+AK PCLHPGD+R+L AVDVP LHH+VDC++FP KGERPH
Sbjct: 823 RFSST--DKNT-EVILGTVVIAKNPCLHPGDVRILEAVDVPELHHLVDCLVFPQKGERPH 879
Query: 633 TNECSGSDQDGEIYFVCWDHDRIPP--LQFQPTAYTPAPEKILARDVTIEDVEEYFADYI 690
NE SGSD DG++YFV WD IPP + P Y+P K L R V+ D+ ++F +
Sbjct: 880 ANEASGSDLDGDLYFVTWDEKLIPPGKKSWNPMDYSPPEAKQLPRQVSQHDIIDFFLKNM 939
Query: 691 VNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYP 750
++++LG ICNAHVV+A AM +C L +L++ DF KTG A +P L+ K+YP
Sbjct: 940 ISENLGRICNAHVVHADLSEYGAMDEKCIHLAELAATAVDFPKTGKLAIMPPHLKPKVYP 999
Query: 751 DFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAM 810
DFM K+D Y+S+ I+G LYR + + + + YD D+EV G +
Sbjct: 1000 DFMGKEDGQSYKSEKILGRLYRSIQEASNGDVVSQEVCTPNDLP-YDIDLEVPGASDFLA 1058
Query: 811 QFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKR-DL-EAISFSVRSL 868
++ + YD +L L+ Y ++TEAE+++ I + K+ KK+ D+ + + + +L
Sbjct: 1059 S--AWQCKCSYDAQLSALLSQYRVRTEAELVTGHITFLVKNSSKKQGDIKDRLKTAYSAL 1116
Query: 869 RKEARAWF 876
RKE ++ F
Sbjct: 1117 RKEFKSTF 1124
Score = 253 (94.1 bits), Expect = 5.3e-78, Sum P(2) = 5.3e-78
Identities = 57/150 (38%), Positives = 91/150 (60%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLS----P- 322
V ++++TP++ Y PE+ SNRV+R Y + D FLR++F+DE + L + VL+ P
Sbjct: 436 VRRLVITPTRAYCLPPEVERSNRVLRHYHEVADRFLRVTFMDEGMQVLNNNVLNSFTAPI 495
Query: 323 --QISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTA 380
+ S +++T +Y+RV L G + +K+ LAFS++Q R+ + W FA + T
Sbjct: 496 VKDLMSNFFQQKTTVYKRVRMLLTEGFHMCGRKYSFLAFSSNQLRDKSAWFFAEDRKTTV 555
Query: 381 ADIRERMGDFREIKNVTKYAARLGQSFASS 410
IR+ MG F KNV K+AAR+GQ F+S+
Sbjct: 556 EAIRKWMGRFTS-KNVAKHAARMGQCFSST 584
Score = 188 (71.2 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 51/159 (32%), Positives = 87/159 (54%)
Query: 451 GYKVTLRNNMFKYKSESTSLDILANSKYQ-----REGVARLRL----DNVFERKQREVVA 501
G ++ LR +M K++S L++++ +K+Q R+ + L D++F + Q +++
Sbjct: 658 GTRLFLRPSMRKFESNHLVLEVVSWTKFQPGFLNRQIIILLSSLNVPDSIFWQMQETMLS 717
Query: 502 RLDAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELR 561
L+ IL+D E L S A++ N +L+ G++P EP L M ++ L +L
Sbjct: 718 NLNNILSDRDVAFEVLTT-SCADDGNTAALMLSAGFEPRTEPHLKAMLLAIRSAQLQDLL 776
Query: 562 TRARIFIQNGQAMMGCLDEKGTLEYGQGLMVVAKKPCLH 600
+ARIF+ G+ +MGCLDE G LE GQ + A P L+
Sbjct: 777 EKARIFVPKGRWLMGCLDELGVLEQGQ-CFIRATVPSLN 814
Score = 83 (34.3 bits), Expect = 2.5e-60, Sum P(3) = 2.5e-60
Identities = 38/129 (29%), Positives = 61/129 (47%)
Query: 370 WM--FASRPELTAADIRERMGD-FREI-KNVTKYAARLGQSFASSREALHVDSN-IGKIS 424
WM F S+ A RMG F VT + +SF ++ S+ IGKI+
Sbjct: 561 WMGRFTSK---NVAKHAARMGQCFSSTYATVTMRPDEVDESFDDVVHNEYIFSDGIGKIT 617
Query: 425 AELAETVAKKCGYAIYTPSAFQIRYGGYK--------------VTLRNNMFKYKSESTSL 470
+LA VA++ PSA+QIR+ G+K + LR +M K++S L
Sbjct: 618 PDLALEVAERLQLTDNPPSAYQIRFAGFKGVIAVWQGHGDGTRLFLRPSMRKFESNHLVL 677
Query: 471 DILANSKYQ 479
++++ +K+Q
Sbjct: 678 EVVSWTKFQ 686
Score = 40 (19.1 bits), Expect = 2.5e-60, Sum P(3) = 2.5e-60
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 96 LGGDLKLNFGCQISKDKFSVFWSQENVSVKLCSDLRKFGFFL---SYESVDYKL-ELSNE 151
L ++ +F I KD S F+ Q+ K L GF + Y + + +L ++
Sbjct: 483 LNNNVLNSFTAPIVKDLMSNFFQQKTTVYKRVRMLLTEGFHMCGRKYSFLAFSSNQLRDK 542
Query: 152 SIW 154
S W
Sbjct: 543 SAW 545
Score = 37 (18.1 bits), Expect = 1.6e-55, Sum P(3) = 1.6e-55
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 334 RIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFAS 374
++ E +LS L N + D FE L S + + M ++
Sbjct: 710 QMQETMLSNLNNILSDRDVAFEVLTTSCADDGNTAALMLSA 750
Score = 37 (18.1 bits), Expect = 6.7e-16, Sum P(2) = 6.7e-16
Identities = 15/74 (20%), Positives = 29/74 (39%)
Query: 747 KIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFK 806
K P F+ +Q S ++ +++ ++ S ++ A + T +G
Sbjct: 684 KFQPGFLNRQIIILLSSLNVPDSIFWQMQETMLSNLNNILSDRDVAFEVLTTSCADDGNT 743
Query: 807 EVAMQFDGFKYRTE 820
M GF+ RTE
Sbjct: 744 AALMLSAGFEPRTE 757
>UNIPROTKB|G4NJ50 [details] [associations]
symbol:MGG_02748 "RNA-dependent RNA polymerase 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR007855 Pfam:PF05183 EMBL:CM001237
GO:GO:0003968 KO:K11699 PANTHER:PTHR23079 RefSeq:XP_003721007.1
EnsemblFungi:MGG_02748T0 GeneID:5050479 KEGG:mgr:MGG_02748
Uniprot:G4NJ50
Length = 1407
Score = 385 (140.6 bits), Expect = 4.9e-64, Sum P(3) = 4.9e-64
Identities = 92/261 (35%), Positives = 142/261 (54%)
Query: 589 GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFV 648
GL +V + P LHPGD+RV++A+DVP L H+ D V+F G+R CSG D DG+ +FV
Sbjct: 848 GLCLVGRNPSLHPGDIRVVQAIDVPQLRHIRDVVVFAQTGDRDIPGMCSGGDLDGDDFFV 907
Query: 649 CWDHDRIP-PLQ--FQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVY 705
WD +P P Q ++P +Y P P + L R+VT +D+ ++F Y+ N SL I +AH+
Sbjct: 908 LWDERLLPLPSQRNYKPASYHPPPARELDREVTADDLCQFFVTYMKNFSLPRIAHAHL-- 965
Query: 706 AYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQH 765
A ++ A +C +L L S+ D+ KTGV A I RL +P FMEK + Y S+
Sbjct: 966 AQADKYGAKDEKCLELAYLHSLAVDYPKTGVPAAIRPRLMPNEFPHFMEKA-RGRYHSRK 1024
Query: 766 IVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKL 825
I+G LY +V + F + + Y ++ +G + + K +T YD +
Sbjct: 1025 ILGKLYDQVKPVNFHPAYEMPFDVK-ILSLYG-ELSQHGDLGPKLLREARKLKTLYDQSI 1082
Query: 826 GNLMDYYGIKTEAEMLSRCIM 846
+M + I TE E+ S ++
Sbjct: 1083 MRIMGQHEIATEFEVFSAFVL 1103
Score = 272 (100.8 bits), Expect = 4.9e-64, Sum P(3) = 4.9e-64
Identities = 61/143 (42%), Positives = 86/143 (60%)
Query: 270 KILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDE-DLGKLYSTVLSPQISSTN 328
K+ VTPS +Y P + +NRV+R Y + D FLR+ F DE G+L++ P +
Sbjct: 458 KVTVTPSTMYLSSPMVETTNRVLRHYNEHKDRFLRVQFTDELPTGRLHA----PNDLGAD 513
Query: 329 GERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMG 388
E I+ RV L+NGI IGD+ ++ LAF +SQ REN+ + F ++T IR MG
Sbjct: 514 DE----IFSRVYRVLKNGIHIGDRHYKFLAFGSSQMRENSTYFFCDAGDVTCDSIRAWMG 569
Query: 389 DFREIKNVTKYAARLGQSFASSR 411
F I+NV KYAARLGQ F+++R
Sbjct: 570 RFSHIRNVGKYAARLGQCFSTTR 592
Score = 138 (53.6 bits), Expect = 4.9e-64, Sum P(3) = 4.9e-64
Identities = 44/186 (23%), Positives = 96/186 (51%)
Query: 451 GYKVTLRNNMFKYKSESTSLDILANSKYQ-----REGVA---RLRLDN-VFERKQREVVA 501
G ++ +R + K++++ + L+++ S + R+ ++ L + N VFE E +A
Sbjct: 662 GQEIHIRPSQLKFETDHSRLEVIRCSHFSVASLNRQTISVLTSLGVKNEVFESMLAEQLA 721
Query: 502 RLDAILTDSSKVQEAL-ELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLEL 560
+ + + D++ L + + + TN L L+ G+ EPF+ M + + ++ L
Sbjct: 722 KYNRAMEDATAAMTLLTQYVDENQMTNTLARLVKAGFMESHEPFVCTMLRLWRTWSVKTL 781
Query: 561 RTRARIFIQNGQAMMGCLDEKGTLEYGQGLMVVA---KKPCLHPGDMRV----LRAVDVP 613
+ +AR+ ++ G ++GC+DE TL +G + A ++P L+ G+M++ L+ D P
Sbjct: 782 KEKARLVVEKGAFVLGCVDETKTL-HGHFTHIPASPNQRPRLN-GNMKLPEIFLQVPDGP 839
Query: 614 ALHHMV 619
+ + V
Sbjct: 840 SRDYKV 845
>POMBASE|SPAC6F12.09 [details] [associations]
symbol:rdp1 "RNA-directed RNA polymerase Rdp1"
species:4896 "Schizosaccharomyces pombe" [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003968 "RNA-directed RNA polymerase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005721 "centromeric heterochromatin" evidence=IDA] [GO:0005724
"nuclear telomeric heterochromatin" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0030702 "chromatin silencing at
centromere" evidence=IMP] [GO:0031047 "gene silencing by RNA"
evidence=IMP] [GO:0031048 "chromatin silencing by small RNA"
evidence=IDA] [GO:0031060 "regulation of histone methylation"
evidence=IMP] [GO:0031380 "nuclear RNA-directed RNA polymerase
complex" evidence=IDA] [GO:0031934 "mating-type region
heterochromatin" evidence=IDA] [GO:0034613 "cellular protein
localization" evidence=IMP] [GO:0045141 "meiotic telomere
clustering" evidence=IMP] [GO:0071276 "cellular response to cadmium
ion" evidence=IMP] [GO:0071585 "detoxification of cadmium ion"
evidence=IMP] InterPro:IPR007855 Pfam:PF05183 PomBase:SPAC6F12.09
GO:GO:0005829 EMBL:CU329670 GO:GO:0034613 GenomeReviews:CU329670_GR
GO:GO:0071276 GO:GO:0071585 GO:GO:0003723 GO:GO:0030702
GO:GO:0000070 GO:GO:0031048 GO:GO:0005721 GO:GO:0031934
GO:GO:0005724 GO:GO:0045141 GO:GO:0031060 GO:GO:0031380
GO:GO:0003968 eggNOG:NOG307726 KO:K11699 PANTHER:PTHR23079
PIR:T11660 RefSeq:NP_593295.1 IntAct:O14227 STRING:O14227
EnsemblFungi:SPAC6F12.09.1 GeneID:2542198 KEGG:spo:SPAC6F12.09
OMA:RISAQNT OrthoDB:EOG44QX81 NextBio:20803268 Uniprot:O14227
Length = 1215
Score = 375 (137.1 bits), Expect = 1.7e-55, Sum P(3) = 1.7e-55
Identities = 94/293 (32%), Positives = 152/293 (51%)
Query: 589 GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFV 648
GL +VA+ P LHPGD+RV +AV L H+ + ++FP G+R CSG D DG+ Y V
Sbjct: 848 GLCIVARNPSLHPGDVRVCKAVRCDELMHLKNVIVFPTTGDRSIPAMCSGGDLDGDEYTV 907
Query: 649 CWDHDRIPPLQFQPTAYTPAPEK---ILARDVTIEDVEEYFADYIVNDSLGIICNAHVVY 705
WD +P + P +P+K L I+ V+E+F +YI DSLG+I NA +
Sbjct: 908 IWDQRLLPKIVNYPPLLESSPKKSIDFLEGKPLIDSVKEFFVNYIKYDSLGLISNAWKAW 967
Query: 706 AY---SEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYE 762
A+ + P+ N C +L ++ S DF+K+GVA + ++ K YPDFM+K +
Sbjct: 968 AHDHDNNPEGIFGNVCLELAEMHSKAVDFAKSGVACKMQAKYHPKRYPDFMQKTKTRSFR 1027
Query: 763 SQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQ-FYDTDMEVNGFKEVAMQFDGFKYRTEY 821
S+ VG ++R + ++ M YD M++ FK + + + Y
Sbjct: 1028 SETAVGKIFRYAARFQRESGRPATY--NPIMNTVYDPCMKLPRFKTEYLNV-AEEVKKHY 1084
Query: 822 DNKLGNLMDYYGIKTEAEMLSRCIM---EMAKSFDKKRDLEAISFSVRSLRKE 871
DN L ++M + I TE E+ + I+ ++AK+ ++ E +SF L+K+
Sbjct: 1085 DNDLRSIMARFDISTEYEVYTAFILFKDDLAKTVNEYGLREEVSFQFDLLKKK 1137
Score = 262 (97.3 bits), Expect = 1.7e-55, Sum P(3) = 1.7e-55
Identities = 56/147 (38%), Positives = 88/147 (59%)
Query: 266 IYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQIS 325
I++ K+ VTP+ + + NRV+R++ D + F+R+ DE Y +
Sbjct: 452 IHIKKLYVTPTTLRIVEDSLEAGNRVIRNFKDFANRFMRVQITDE----YYKQKIR---G 504
Query: 326 STNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRE 385
++G R ++Y R+ L GI +G++ +E LAF NSQ RE+ + FAS +L A IRE
Sbjct: 505 GSDGFRNEKLYSRIQQLLTYGIKVGNQIYEFLAFGNSQLREHGAYFFASGSDLNAKQIRE 564
Query: 386 RMGDFREIKNVTKYAARLGQSFASSRE 412
MGDF EI +V+KYAAR+GQ F++++E
Sbjct: 565 WMGDFSEINSVSKYAARMGQCFSTTKE 591
Score = 74 (31.1 bits), Expect = 1.7e-55, Sum P(3) = 1.7e-55
Identities = 28/155 (18%), Positives = 69/155 (44%)
Query: 442 PSAFQIRYGGYKVTLRNNMFKYKSESTSLDILANSKYQREGVARLRLDNVFERKQREVVA 501
P+ + G V R + K+KS ++L+++ S++ + ++L + E E
Sbjct: 657 PTKLEYHQGNL-VFPRRSQDKFKSFHSTLEVIKISRFSNAHL-NMQLITLLEGLGVEKTV 714
Query: 502 RLDAILTDSSKVQEALE-----LMSSAEN------TNVLKELLNCGYKPDAEPFLSMMPQ 550
L+ + SK+ E++ ++ +N T ++ + + G+ + F +
Sbjct: 715 FLELTRSQLSKMNESINSKQKSILMLRDNVDEYHSTLIIADFIQAGFLERDDAFTENLLN 774
Query: 551 TFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLE 585
++ L ++ + ++ + G ++G DE GTL+
Sbjct: 775 LYYEWVLRLIKEKQKVSVPKGAYLLGVADETGTLK 809
Score = 40 (19.1 bits), Expect = 5.5e-20, Sum P(3) = 5.5e-20
Identities = 16/90 (17%), Positives = 37/90 (41%)
Query: 790 EGAMQFYDTDME-VNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEA---------- 838
E + YD D+ + +++ +++ + + + L ++ YG++ E
Sbjct: 1078 EEVKKHYDNDLRSIMARFDISTEYEVYTAFILFKDDLAKTVNEYGLREEVSFQFDLLKKK 1137
Query: 839 ---EMLSRCIMEMAKSFDKKRDLEAISFSV 865
E L +C + +FD E I+ +V
Sbjct: 1138 YTQEYLEKCALSNQSAFDSSEYEERINSAV 1167
>WB|WBGene00004510 [details] [associations]
symbol:rrf-3 species:6239 "Caenorhabditis elegans"
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007855 Pfam:PF05183 EMBL:Z48334 GO:GO:0003968
PANTHER:PTHR23079 EMBL:Z66500 GeneTree:ENSGT00390000016620
RefSeq:NP_495713.2 IntAct:G5EE53 EnsemblMetazoa:F10B5.7
GeneID:174315 KEGG:cel:CELE_F10B5.7 CTD:174315 WormBase:F10B5.7
OMA:HISKAKI Uniprot:G5EE53
Length = 1765
Score = 328 (120.5 bits), Expect = 3.6e-47, Sum P(3) = 3.6e-47
Identities = 82/277 (29%), Positives = 141/277 (50%)
Query: 589 GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFV 648
G +++ K PC PGD+RV AV PAL H+VD V+FP G RPH +E +GSD DG+ Y +
Sbjct: 1083 GKVLITKNPCHVPGDVRVFDAVWQPALAHLVDVVVFPQHGPRPHPDEMAGSDLDGDEYSI 1142
Query: 649 CWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYS 708
WD + + + + + ++ T +D+ E+F Y+ DS+G + +AH+ AY+
Sbjct: 1143 IWDQEMLLDYNEEAMVFPSSSAAEEDKEPTTDDMVEFFLRYLQQDSIGRMSHAHL--AYA 1200
Query: 709 EPDKAMSNRCPDLVKLSSIVGDFSKTGVAAT-IPSRLRVKIYPDFMEKQDKTWYESQHIV 767
+ C + ++ DF K+GV A + S + ++ PD+M K Y S +
Sbjct: 1201 DLHGLFHENCHAIALKCAVAVDFPKSGVPAEPLSSFEQCEMTPDYMMSGGKPMYYSTRLN 1260
Query: 768 GNLYREVNGIAPSTTTIKSFAKEGAM--QFYDT-----DMEVNGFKEVAMQFDGFKYRTE 820
G L+R+ + ++ F G++ + YD D++V E+ + R E
Sbjct: 1261 GQLHRKARKVEE---VLEEFETRGSVFEREYDKLICPEDVDVFFGNEIKL-VQTLTLRDE 1316
Query: 821 YDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRD 857
Y +++ L+D YGI+ EA ++S + + +RD
Sbjct: 1317 YVDRMQQLLDEYGIEDEASVVSGHAASIKRLAGMERD 1353
Score = 212 (79.7 bits), Expect = 3.6e-47, Sum P(3) = 3.6e-47
Identities = 59/185 (31%), Positives = 96/185 (51%)
Query: 258 AVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYS 317
A L + V K++VTPS++ PE+ + NRVVR + D LR F D++LG+L
Sbjct: 669 AKPLPKNCVSVAKVIVTPSRILLMAPEVMMVNRVVRRFGP--DYALRCVFRDDNLGRLAI 726
Query: 318 TVLSPQISSTNGERRTRIY-ERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRP 376
S N + + I E + TL+NGI + D+ + L +SNSQ R+ +++A R
Sbjct: 727 R----DFSINNIDHMSNIVTEGIYLTLKNGIQVADRVYSFLGWSNSQMRDQGCYLYAPRV 782
Query: 377 -----ELTAA--DIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSNIGKISAELAE 429
E+T DIR MGDFR+ +V K +R+GQ F ++ + ++ + + ++
Sbjct: 783 NALTGEVTGTVEDIRVWMGDFRDAISVPKMMSRMGQCFTQAQPTVRLERHHWIVEPDIEG 842
Query: 430 TVAKK 434
V K
Sbjct: 843 GVENK 847
Score = 101 (40.6 bits), Expect = 3.6e-47, Sum P(3) = 3.6e-47
Identities = 36/168 (21%), Positives = 77/168 (45%)
Query: 470 LDILANSKYQREGVARLRLDN-VFERKQREVVARLDAILTDSSKVQEALELMSSAENTNV 528
+ IL ++ + R+ N V +RE+ + + ++ ++ +E + + A + N
Sbjct: 943 ITILDQVSEKQSASSHRRITNRVHYYLERELCSLSNMLINENQAAEELVNRTNLAIDWNA 1002
Query: 529 LKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQN--GQAMMGCLDEKGTLEY 586
+ G++ +P + M + + N++ ++A+IF+ G++M G +DE G L+Y
Sbjct: 1003 ASK--RAGFELSVDPLIRDMLFSIYRYNIIHHISKAKIFLPPSLGRSMYGVVDETGLLQY 1060
Query: 587 GQ-------GLMVVAKKPCLHPGDMRVLR-AVDVPALHHMVDCVLFPA 626
GQ + + +P L G + + + VP + D V PA
Sbjct: 1061 GQVFIQYSPSIRQTSNRPILKTGKVLITKNPCHVPGDVRVFDAVWQPA 1108
Score = 55 (24.4 bits), Expect = 7.8e-31, Sum P(3) = 7.8e-31
Identities = 46/204 (22%), Positives = 87/204 (42%)
Query: 265 LIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKL--YSTVLSP 322
L+ ++++ V GP+ +L R V + D DN RL+ D + + S +++
Sbjct: 690 LLMAPEVMMVNRVVRRFGPDYAL--RCV--FRD--DNLGRLAIRDFSINNIDHMSNIVTE 743
Query: 323 QISST--NG-ERRTRIYERV---LSTLRN-GIVIGDKKFETLAFSNSQERENT-LWMFAS 374
I T NG + R+Y + S +R+ G + + L + E+ +WM
Sbjct: 744 GIYLTLKNGIQVADRVYSFLGWSNSQMRDQGCYLYAPRVNALTGEVTGTVEDIRVWMGDF 803
Query: 375 RPELTAADIRERMGD-FREIKNVTKYAAR---LGQSFASSREALHVDSN-IGKISAELAE 429
R ++ + RMG F + + + + E + S+ G+IS +LA
Sbjct: 804 RDAISVPKMMSRMGQCFTQAQPTVRLERHHWIVEPDIEGGVENKYCFSDGCGRISIKLAT 863
Query: 430 TVAKKCGYAIYTPSAFQIRYGGYK 453
++K P+ FQ+R+ G+K
Sbjct: 864 HISKILQLK-EVPACFQVRFKGFK 886
Score = 39 (18.8 bits), Expect = 9.2e-24, Sum P(2) = 9.2e-24
Identities = 15/52 (28%), Positives = 21/52 (40%)
Query: 68 LSYGNSFLKASSAKRRTPHFAKRTPHYKLGGDLKLNFGCQISKDK--FSVFW 117
L YG F++ S + R+T + P K G L C + D F W
Sbjct: 1058 LQYGQVFIQYSPSIRQTSN----RPILKTGKVLITKNPCHVPGDVRVFDAVW 1105
>WB|WBGene00001214 [details] [associations]
symbol:ego-1 species:6239 "Caenorhabditis elegans"
[GO:0007186 "G-protein coupled receptor signaling pathway"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0007276 "gamete generation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0007281 "germ cell development" evidence=IGI] [GO:0031081
"nuclear pore distribution" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0043186 "P granule" evidence=IDA] [GO:0000794
"condensed nuclear chromosome" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0070090 "metaphase plate"
evidence=IDA] InterPro:IPR007855 Pfam:PF05183 GO:GO:0009792
GO:GO:0040010 GO:GO:0002119 GO:GO:0016246 GO:GO:0010171
GO:GO:0048477 GO:GO:0007283 GO:GO:0000910 GO:GO:0007281
GO:GO:0000794 GO:GO:0043186 GO:GO:0031081 EMBL:Z78419 GO:GO:0003968
PANTHER:PTHR23079 BRENDA:2.7.7.48 GeneTree:ENSGT00390000016620
EMBL:AF159143 PIR:T21381 RefSeq:NP_492132.1 UniGene:Cel.23243
ProteinModelPortal:G5EBQ3 IntAct:G5EBQ3 EnsemblMetazoa:F26A3.3
GeneID:172524 KEGG:cel:CELE_F26A3.3 CTD:172524 WormBase:F26A3.3
OMA:LRSMMEN NextBio:875891 GO:GO:0070090 Uniprot:G5EBQ3
Length = 1632
Score = 352 (129.0 bits), Expect = 7.1e-43, Sum P(4) = 7.1e-43
Identities = 97/318 (30%), Positives = 153/318 (48%)
Query: 565 RIFIQNGQAMMGCLDEKGTL-EYGQGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVL 623
+IF+Q + + L K + G +++ K PC+ GD+R+ AVD+P LHHM D V+
Sbjct: 898 QIFVQYTKNLALKLPPKNAARQVLTGTVLLTKNPCIVAGDVRIFEAVDIPELHHMCDVVV 957
Query: 624 FPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDV- 682
FP G RPH +E +GSD DG+ Y + WD + P +T +K ++ I+D+
Sbjct: 958 FPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLLLDKNEDPYDFTSEKQKASFKEDEIDDLM 1017
Query: 683 EEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNR-CPDLVKLSSIVGDFSKTG------ 735
E++ Y+ DS+G I N+H+ ++ ++ R C DL K + DF+K+G
Sbjct: 1018 REFYVKYLKLDSVGQISNSHL---HNSDQYGLNARVCMDLAKKNCQAVDFTKSGQPPDEL 1074
Query: 736 ---------VAATIPSRLRVKIYPDFMEKQDKT-WYESQHIVGNLYREVNGIAPSTTTIK 785
IP R + PD+ D T Y S + G L+RE I I
Sbjct: 1075 ERKWRKDEETGEMIPPE-RAERVPDYHMGNDHTPMYVSPRLCGKLFREFKAI-DDVLKIS 1132
Query: 786 SFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCI 845
E D ++++G+ E R Y+ +L ++M+ YGIKTE E+ S CI
Sbjct: 1133 EERDEQVEISIDETIKIDGYTEYMASAKNDLAR--YNAQLRSMMENYGIKTEGEVFSGCI 1190
Query: 846 MEMAKSFDKKRDLEAISF 863
++M K D + +SF
Sbjct: 1191 VDMRNRISDK-DQDDMSF 1207
Score = 160 (61.4 bits), Expect = 7.1e-43, Sum P(4) = 7.1e-43
Identities = 51/163 (31%), Positives = 77/163 (47%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
V KI+ TP++V + PE + NRV+R Y + LR++F D+D K+ + S + T
Sbjct: 491 VRKIIFTPTRVIYVAPETLMGNRVLRRYDHDGTRVLRITFRDDDNQKMRTNKTSTMLEKT 550
Query: 328 NGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWM---FAS---------- 374
+ Y L+NGI + + F L SNSQ R+N + ++S
Sbjct: 551 VNQ-----Y------LKNGITVAGRNFGYLGSSNSQMRDNGAYFMEKYSSSQCREYERIY 599
Query: 375 --RPELT----AADIRERMGDFREIKNVTKYAARLGQSFASSR 411
+P +T R+ +G F I N+ K ARLGQ F SR
Sbjct: 600 QIKPPITFNPKIQAARKNLGRFETIDNIPKMMARLGQCFTQSR 642
Score = 78 (32.5 bits), Expect = 7.1e-43, Sum P(4) = 7.1e-43
Identities = 34/117 (29%), Positives = 54/117 (46%)
Query: 488 LDNVFERKQ----REVVARLDAILTDSSKVQEALELMSSAENTNVLKEL----------L 533
LD V E + R V R++ +L D + A +++ N LKEL
Sbjct: 783 LDQVSEMQSLECHRRVTNRIEELL-DRQMLSFAQQMVDETFCRNRLKELPRRVDIDYLRT 841
Query: 534 NCGYKPDAEPFL-SMMPQTFHASNLLELRT-RARIFIQNGQAMMGCLDEKGTLEYGQ 588
G+ +EPF S++ + S +LR + I G++M+G +DE G L+YGQ
Sbjct: 842 TWGFTLSSEPFFRSLIKASIKFSITRQLRKEQIPIPCDLGRSMLGVVDETGRLQYGQ 898
Score = 53 (23.7 bits), Expect = 7.1e-43, Sum P(4) = 7.1e-43
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 420 IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK 453
+G +S A+ V++ + PS FQ R+ G K
Sbjct: 676 VGMMSYRFAQMVSEVMDFGKGVPSCFQFRFRGMK 709
>WB|WBGene00004509 [details] [associations]
symbol:rrf-2 species:6239 "Caenorhabditis elegans"
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] InterPro:IPR007855 Pfam:PF05183 GO:GO:0003968
PANTHER:PTHR23079 GeneTree:ENSGT00390000016620 EMBL:AL132848
EMBL:Z81571 RefSeq:NP_493057.1 ProteinModelPortal:G5EFA8
EnsemblMetazoa:M01G12.12 GeneID:173092 KEGG:cel:CELE_M01G12.12
CTD:173092 WormBase:M01G12.12 NextBio:878243 Uniprot:G5EFA8
Length = 1579
Score = 347 (127.2 bits), Expect = 2.2e-41, Sum P(5) = 2.2e-41
Identities = 98/296 (33%), Positives = 154/296 (52%)
Query: 589 GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFV 648
G +++ K P + PGD+R+ AVD+P LHH+ D V+FP G RPH +E +GSD DG+ Y V
Sbjct: 877 GTVLLTKNPGIVPGDVRIFEAVDIPELHHLCDVVVFPQHGPRPHPDEMAGSDLDGDEYSV 936
Query: 649 CWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFAD----YIVNDSLGIICNAHVV 704
WD + L+ A+ A EK L + ED+++ D Y+ D +G+I N+H+
Sbjct: 937 IWDQKLL--LERNEEAFDFAVEKNL-QTYEWEDIDDLMRDVYVEYLKKDLVGLIANSHL- 992
Query: 705 YAYSEPDKAMSNR-CPDLVKLSSIVGDFSKTGVA------------AT---IPSRLRVKI 748
++ +++R C +L K S DFSK+G AT IP R +
Sbjct: 993 --HNSDQYGLTSRVCMNLAKKSCQAVDFSKSGKPPDELQTTWKTDDATGEMIPPE-RAER 1049
Query: 749 YPDFMEKQDKT-WYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKE 807
PD+ D Y S + G L+RE GI + + +++ ++ D + V+GF+E
Sbjct: 1050 VPDYHVGSDHMPKYVSPRLCGKLFREFQGIDNAMKISEEKSEQYKIEV-DESIRVDGFEE 1108
Query: 808 VAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRDLEAISF 863
M+ D K Y+ +L + MD YGI++E E++S CI+EM D + +SF
Sbjct: 1109 Y-ME-DAKKQLASYNGQLKSTMDTYGIQSEGEIMSGCIIEMRNRISDS-DQDDMSF 1161
Score = 149 (57.5 bits), Expect = 2.2e-41, Sum P(5) = 2.2e-41
Identities = 45/165 (27%), Positives = 84/165 (50%)
Query: 261 LDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVL 320
++ G V K++ TP++V + PE+ + NRV+R++ + + LR++F D++ K+ +
Sbjct: 443 IEEGYQRVRKVIFTPTRVIYTPPEMIMGNRVLRNFDRDGTHVLRVTFRDDNNRKMRA--- 499
Query: 321 SPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA------- 373
+ GE ++ L +GIV+ ++ F L S+SQ R+N +
Sbjct: 500 -----NATGELLDICVKKYLE---HGIVVANRDFGFLGCSSSQMRDNGAYFMVKNTDNRH 551
Query: 374 -------SRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSR 411
S+ + +R ++G+F +I+N+ K ARLGQ F SR
Sbjct: 552 KNACKMNSKFKPNIDSVRNQLGNFLQIENIPKLMARLGQCFTQSR 596
Score = 70 (29.7 bits), Expect = 2.2e-41, Sum P(5) = 2.2e-41
Identities = 35/134 (26%), Positives = 62/134 (46%)
Query: 488 LDNVFERKQ----REVVARLDAILTDSSKVQEALELMSSAENTNVLKEL--------LNC 535
LD V E + R + +R++ ++ D + A ++ A N LKE L
Sbjct: 732 LDQVSEMQSLECHRRITSRIEELM-DLQTLSFAKQMTDEACFRNKLKEFPRRIDIDYLRT 790
Query: 536 --GYKPDAEPFL-SMMPQTFHASNLLEL-RTRARIFIQNGQAMMGCLDEKGTLEYGQGLM 591
G+ EPF S++ + + +L + + +I + G++M+G +DE G L+YGQ +
Sbjct: 791 IWGFTLSNEPFFRSLVKASIKFAITKQLFKEQIQIPSELGRSMLGVVDETGILQYGQVFV 850
Query: 592 VVAK--KPCLHPGD 603
K + L P D
Sbjct: 851 QYTKNHRNILPPRD 864
Score = 66 (28.3 bits), Expect = 2.2e-41, Sum P(5) = 2.2e-41
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 420 IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYKVTL 456
+G +S E A+ V++ + PS FQ RY G K L
Sbjct: 630 VGMMSYEFAQEVSRLMSFGRSVPSCFQFRYRGMKGVL 666
Score = 39 (18.8 bits), Expect = 2.2e-41, Sum P(5) = 2.2e-41
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 48 IVEFTTVEAADFI----KCLARERLSYGNSFLKASSAKR 82
+ EF + AD I +CL R+R++Y + ++ + +R
Sbjct: 155 VAEFE-FDRADMITVTFQCLKRKRINY-QTIIRKDTIRR 191
>WB|WBGene00004508 [details] [associations]
symbol:rrf-1 species:6239 "Caenorhabditis elegans"
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS;IDA] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017151
"DEAD/H-box RNA helicase binding" evidence=IPI] [GO:0005844
"polysome" evidence=IDA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IDA] InterPro:IPR007855 Pfam:PF05183
GO:GO:0005634 GO:GO:0048471 GO:GO:0005844 GO:GO:0030422 EMBL:Z78419
GO:GO:0003968 PANTHER:PTHR23079 UniGene:Cel.19452 GeneID:172523
KEGG:cel:CELE_F26A3.8 CTD:172523 GeneTree:ENSGT00390000016620
EMBL:AF159144 RefSeq:NP_001250555.1 ProteinModelPortal:G5ECM1
EnsemblMetazoa:F26A3.8a WormBase:F26A3.8a OMA:QIQIPKE
NextBio:875887 Uniprot:G5ECM1
Length = 1601
Score = 347 (127.2 bits), Expect = 2.5e-41, Sum P(4) = 2.5e-41
Identities = 100/298 (33%), Positives = 153/298 (51%)
Query: 589 GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFV 648
G +++ K PC+ PGD+R+ AVD+P LHHM D V+FP G RPH +E +GSD DG+ Y V
Sbjct: 896 GTVLLTKNPCIVPGDVRIFEAVDIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSV 955
Query: 649 CWDHDRIPPLQFQPTAYTPAPEKI-LARDVTIEDV--EEYFADYIVNDSLGIICNAHVVY 705
WD + + +P + A EKI + D DV E++ Y+ DS+G I N+H+
Sbjct: 956 IWDQELLLERNEEPFDF--AVEKIKVPYDREKLDVLMREFYVTYLKLDSVGQISNSHL-- 1011
Query: 706 AYSEPDKAMSNR-CPDLVKLSSIVGDFSKTG---------------VAATIPSRLRVKIY 749
++ +++R C DL K + DF+K+G IP +I
Sbjct: 1012 -HNSDQYGLNSRVCMDLAKKNCQAVDFTKSGQPPDPLETKWRADPVTFEVIPPENPERI- 1069
Query: 750 PDF-MEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQF---YDTDMEVNGF 805
PDF M + Y S + G L+RE I IK ++E Q+ D + V GF
Sbjct: 1070 PDFHMGNERSPMYVSPRLCGKLFREFQAI---DNVIK-ISEERDEQYNIELDETIFVTGF 1125
Query: 806 KEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRDLEAISF 863
+ M+ K + Y+ +L ++M+ YGI++E E++S CI+EM K D + +SF
Sbjct: 1126 ERY-ME-SAQKQLSSYNGQLRSIMENYGIRSEGEIMSGCIVEMRNRISDK-DQDDMSF 1180
Score = 148 (57.2 bits), Expect = 2.5e-41, Sum P(4) = 2.5e-41
Identities = 50/163 (30%), Positives = 80/163 (49%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
V K++ TP++V + PE + NRV+R + + LR++F D++ K+ S V + T
Sbjct: 464 VRKVIFTPTRVIYIAPETIMGNRVLRKFDKDGTRVLRVTFRDDNNKKMRSNVTGKLLDRT 523
Query: 328 NGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWM---FASRP-------E 377
+ Y L +G+ I ++++ L SNSQ R+N + F +
Sbjct: 524 ANK-----Y------LEHGVRIANREYGFLGCSNSQMRDNGAYFMMRFTDKQLDRFYKCN 572
Query: 378 LTAADI---------RERMGDFREIKNVTKYAARLGQSFASSR 411
TA++I R ++G F EI+NV K ARLGQ F SR
Sbjct: 573 PTASNINFKPKIDEVRFQLGRFSEIENVPKLMARLGQCFTQSR 615
Score = 74 (31.1 bits), Expect = 2.5e-41, Sum P(4) = 2.5e-41
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 536 GYKPDAEPFL-SMMPQTFHASNLLEL-RTRARIFIQNGQAMMGCLDEKGTLEYGQGLMVV 593
G+ +EPF S++ + S +L + + +I + G++M+G +DE G L+YGQ +
Sbjct: 812 GFTLSSEPFFRSLIKASIKFSITKQLCKEQIQIPSELGRSMLGVVDETGRLQYGQIFVQY 871
Query: 594 AK--KPCLHPGD 603
K K L P D
Sbjct: 872 TKNYKKKLPPRD 883
Score = 59 (25.8 bits), Expect = 2.5e-41, Sum P(4) = 2.5e-41
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 420 IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK 453
+G +S + A+ V++ + PS FQIR+ G K
Sbjct: 649 VGMMSYQFAQEVSQAMQFGKAVPSCFQIRFRGNK 682
Score = 37 (18.1 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 5/19 (26%), Positives = 13/19 (68%)
Query: 540 DAEPFLSMMPQTFHASNLL 558
+ EPF+ +P+ + ++L+
Sbjct: 1499 ECEPFVIELPENINVNDLI 1517
>ASPGD|ASPL0000040001 [details] [associations]
symbol:rrpC species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003968 "RNA-directed RNA
polymerase activity" evidence=IEA] InterPro:IPR007855 Pfam:PF05183
EMBL:BN001306 GO:GO:0003968 eggNOG:NOG307726 KO:K11699
PANTHER:PTHR23079 EMBL:AACD01000048 RefSeq:XP_660321.1
EnsemblFungi:CADANIAT00010398 GeneID:2874470 KEGG:ani:AN2717.2
HOGENOM:HOG000166092 OMA:KHKARIP OrthoDB:EOG4VMJPG Uniprot:Q5B9R3
Length = 1203
Score = 223 (83.6 bits), Expect = 1.0e-27, Sum P(2) = 1.0e-27
Identities = 52/167 (31%), Positives = 82/167 (49%)
Query: 591 MVVAKKPCLHPGDMRVLRAVDVPALHHMV---DCVLFPAKGERPHTNECSGSDQDGEIYF 647
++V + P LH GD++ V P H + +C++F KG R ++ SG D DG++Y
Sbjct: 773 LLVTRSPALHNGDIQYPYNVVPPKGHPLQQQRNCIVFSQKGTRDLPSQLSGGDLDGDLYN 832
Query: 648 VCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAY 707
+ WD P F P Y P + R V ED+ +F +++ +D LG+I H++ A
Sbjct: 833 IIWDPAAAPKRVFTPANYPRNPPLDIKRVVEREDMANFFVEFMQSDRLGVIATKHMILAD 892
Query: 708 SEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRV-KIYPDFM 753
+ C L +L S DFSKTG+ + V + PDF+
Sbjct: 893 QMELGTSHSDCKKLAQLHSTAVDFSKTGIPVRLKEMPFVNRSRPDFL 939
Score = 181 (68.8 bits), Expect = 1.0e-27, Sum P(2) = 1.0e-27
Identities = 58/214 (27%), Positives = 107/214 (50%)
Query: 265 LIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQI 324
L ++++++VTPS++ GPE NR++R +P+ + F+R+ F DE+ +Y +P+I
Sbjct: 387 LAHIHRVVVTPSRITLHGPETEPLNRILRRFPNHHEYFIRVQFCDENGEDIY---FNPRI 443
Query: 325 SSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAA--- 381
+++ I+ R + NG I + + L FS+S R + W A + +
Sbjct: 444 NNS------LIFARFKNVFANGFQIAGRTYTFLGFSHSSLRSRSAWFSAPFIDDDGSLQS 497
Query: 382 --DIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN-I-----------GKISAEL 427
I + +G F EI + + AAR+GQ+F+ + A+++ N I G++ ++
Sbjct: 498 YFTIIKAIGRFSEITSPARCAARIGQAFSETPFAVNLKENGIRVLRIPDVQVGGRVFSDG 557
Query: 428 AETVAKKCGYAIY--------TPSAFQIRYGGYK 453
T++ K I+ P+ FQIR GG K
Sbjct: 558 VGTISAKAVDIIHGVLPPRNGAPTCFQIRLGGAK 591
Score = 64 (27.6 bits), Expect = 2.5e-11, Sum P(3) = 2.5e-11
Identities = 22/77 (28%), Positives = 34/77 (44%)
Query: 543 PFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQGLMVVAKKPCLH-- 600
PFL + + L L+ +ARI + G + G +DE G L + + L
Sbjct: 708 PFLRAVVEAMVLRELRLLKHKARIPVHKGITLYGVMDETGFLNENEVFVTYQAMDRLAAP 767
Query: 601 PGDMRVLRAVDVPALHH 617
P + R+L PALH+
Sbjct: 768 PQNCRLL-VTRSPALHN 783
Score = 50 (22.7 bits), Expect = 2.5e-11, Sum P(3) = 2.5e-11
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 730 DFSKTGVAATIPSRLRVKI-------YPD--FMEKQDKTWYESQHIVGNLYREVN 775
DF G A I R +++ YPD +Y S+ I+G LYR +N
Sbjct: 937 DFLAPGPLAKIHDRQNIQLEARYVHPYPDDDIDFSPVHKYYRSEKILGKLYRAIN 991
Score = 38 (18.4 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 478 YQREGVARLRLDNVFERKQREVVARLDAIL 507
Y+ +G+ R FE +R A ++A+L
Sbjct: 1165 YEPKGLDRATQKTTFEYGERWTAADVEAML 1194
Score = 38 (18.4 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 17/77 (22%), Positives = 33/77 (42%)
Query: 472 ILANSKYQ--REGVARLRLDNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVL 529
+L NS Q R+ ++L++ FER +++++ + V A L+ E
Sbjct: 1081 VLNNSGAQTNRQRERSIKLNDEFERIASFILSQMRPSGLITGYVVSACALLMEVEELEKS 1140
Query: 530 KELLNCGYKPDAEPFLS 546
+ L +P + F S
Sbjct: 1141 RRLYGENRRPLLDAFTS 1157
>DICTYBASE|DDB_G0289659 [details] [associations]
symbol:rrpA "RNA-directed RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR007855 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF05183 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0289659
GO:GO:0005524 GenomeReviews:CM000154_GR GO:GO:0003676
EMBL:AAFI02000148 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG1111 GO:GO:0003968 PANTHER:PTHR23079
ProtClustDB:CLSZ2429575 RefSeq:XP_636093.1
ProteinModelPortal:Q54H25 EnsemblProtists:DDB0191515 GeneID:8627305
KEGG:ddi:DDB_G0289659 InParanoid:Q54H25 Uniprot:Q54H25
Length = 2417
Score = 261 (96.9 bits), Expect = 1.3e-23, Sum P(3) = 1.3e-23
Identities = 76/266 (28%), Positives = 134/266 (50%)
Query: 588 QGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYF 647
+GL++V K PC HPGD+R L+AVD L H+ + ++F KG+ P+ E SGSD DG+ YF
Sbjct: 1557 EGLVMVIKNPCTHPGDVRYLKAVDNIRLRHLRNVLVFSTKGDVPNFKEISGSDLDGDRYF 1616
Query: 648 VCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFA---DYIVN---DSLGIICNA 701
C+D I TAY E + D + FA Y N LG + ++
Sbjct: 1617 FCYDKSLIGNRSESETAYLVV-ETVSNNDKKANVFNDPFALSSMYSTNAERQELGKLYHS 1675
Query: 702 HVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKI----YPDFMEKQD 757
H+ A S+ A + K D+ KTG+ TIP + +++ YP +M++++
Sbjct: 1676 HL--AISDQYGANHKYSIQISKECFKEIDYPKTGIHGTIPKEVNIRLQTVGYPHYMQREN 1733
Query: 758 KT--WYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGF 815
T +Y+S+ I+G +Y +++ + I F ++ D V+G+ E+ +
Sbjct: 1734 STRVYYQSKKIMGKMYDQIDQLV----YIGDFLPNISL---DKSNLVDGY-EIYLNSAKI 1785
Query: 816 KYRTEYDNKLGNLMDYYGIKTEAEML 841
Y ++Y ++ +L+ +Y ++E ++
Sbjct: 1786 LY-SQYKLQVHSLLRHYSAESEESIM 1810
Score = 114 (45.2 bits), Expect = 1.3e-23, Sum P(3) = 1.3e-23
Identities = 54/217 (24%), Positives = 93/217 (42%)
Query: 263 GGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSP 322
G + + +TPS+ F P + S R VR + NF+ + V+E L P
Sbjct: 1188 GEFTMIRDVFITPSRTIFIQPTLQRSCRAVRKFGSS--NFIVVKIVNESL--------EP 1237
Query: 323 QISSTNGERRTRIYE-RVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAA 381
+ N + ++E R+ L GI++G + + SNSQ RE + W F S ++
Sbjct: 1238 -LQGVNNKHP--LHENRIKPILEGGILVGGEIYSYAGNSNSQLREYSSW-FVSN-QIGTH 1292
Query: 382 DIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN------------------IGKI 423
++ G + NV K+ +G F+++ + + N G+I
Sbjct: 1293 TVKIWSG-IEHVDNVRKFFRCIGLMFSTTIPTVTLPQNRIYRIQDITRNTHEFTEGCGEI 1351
Query: 424 SAELAETVAKKCGYAIYTPSAFQIRYGGYK-VTLRNN 459
ELA+ + + + T A+Q+R GG K V + NN
Sbjct: 1352 GPELAKHLNENYNFRPST-CAYQVRIGGNKGVLVVNN 1387
Score = 47 (21.6 bits), Expect = 1.3e-23, Sum P(3) = 1.3e-23
Identities = 41/152 (26%), Positives = 65/152 (42%)
Query: 126 LCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSGHSVSIGQSSAICLELPSRALIP 185
L S+ ++ FL+Y VD N S + L R +S Q +I +E ++ LI
Sbjct: 515 LVSNSKELQIFLNYSDVDLDGVRGNPSFLKA-LERLDKYSK---QLESIYIEY-TKVLIE 569
Query: 186 K-ALKDFFHYKESLVQFTLLPGFVFSCNSDLNQDGKHALEMLFHLRECCYDPVSWLRE-- 242
AL + T L + S N + N+ LE+ +++ D S +
Sbjct: 570 LYALLSVLSTEGPKQVLTRLDLLMQSTNQE-NELYNKLLELRYYISGQYEDRESNFEKGS 628
Query: 243 -QYRKHVSSGQFPTSPAVALDGGLIYVNKILV 273
+YRK +SS ++ S A DG L +ILV
Sbjct: 629 TRYRKLISSLEYAISDAS--DGELQKDLRILV 658
Score = 38 (18.4 bits), Expect = 4.0e-16, Sum P(2) = 4.0e-16
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 297 DEIDNFLRLSFVDEDLGKLYSTVLS 321
D++ N R V + L + YST ++
Sbjct: 71 DQLPNIDRYHLVSKSLQQQYSTTVN 95
>DICTYBASE|DDB_G0291249 [details] [associations]
symbol:rrpB "RNA-directed RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR007855 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF05183 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0291249
GO:GO:0005524 EMBL:AAFI02000177 GenomeReviews:CM000155_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG1111 GO:GO:0003968 KO:K11699
PANTHER:PTHR23079 RefSeq:XP_635263.1 ProteinModelPortal:Q54EH7
EnsemblProtists:DDB0220017 GeneID:8628208 KEGG:ddi:DDB_G0291249
InParanoid:Q54EH7 OMA:NINERTN ProtClustDB:CLSZ2429575
Uniprot:Q54EH7
Length = 2403
Score = 257 (95.5 bits), Expect = 9.0e-23, Sum P(3) = 9.0e-23
Identities = 72/237 (30%), Positives = 119/237 (50%)
Query: 588 QGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYF 647
+GL++V K PC HPGD+R L+AVD L H+ + ++F KG+ P+ E SGSD DG+ YF
Sbjct: 1571 EGLVMVIKNPCTHPGDVRYLKAVDNLRLRHLRNVLVFSTKGDVPNFKEISGSDLDGDRYF 1630
Query: 648 VCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFA---DYIVN---DSLGIICNA 701
C+D I TAY E + D + FA Y N LG + N+
Sbjct: 1631 FCYDKSLIGNRSKSETAYL-GDETVSNNDKKANVFNDPFALSSMYSTNVERQELGKMYNS 1689
Query: 702 HVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSR----LRVKIYPDFMEKQD 757
H+ A S+ A + K D+ KTG+ TIP L+ K YP +M++++
Sbjct: 1690 HL--AISDLFGANHEFSIQISKECFKEIDYPKTGIHGTIPKEANVWLKTKGYPHYMQREN 1747
Query: 758 KT--WYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQF 812
T +Y+S+ I+G +Y +++ + + + + + + D ++ +N K + Q+
Sbjct: 1748 STRVYYQSKTIMGKMYDQIDQLVYIGDFLPNISLDKSNLVDDYEIYLNSAKILYSQY 1804
Score = 117 (46.2 bits), Expect = 9.0e-23, Sum P(3) = 9.0e-23
Identities = 54/217 (24%), Positives = 93/217 (42%)
Query: 263 GGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSP 322
G + + +TPS+ F P + S R VR + NF+ + V+E L P
Sbjct: 1203 GEFTMIRDVFITPSRTIFIQPTLQRSCRAVRKFGSS--NFIMVKIVNESL--------EP 1252
Query: 323 QISSTNGERRTRIYE-RVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAA 381
+ N + ++E R+ L GI++G K + SNSQ RE + W F S ++
Sbjct: 1253 -LQGVNNKHP--LHENRIKPILEGGILVGGKIYSYAGNSNSQLREYSSW-FVSN-QIGTH 1307
Query: 382 DIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN------------------IGKI 423
++ G + NV K+ +G F+++ + + N G+I
Sbjct: 1308 TVKIWSG-IEHVDNVRKFFRCIGLMFSTTIPTVTLPQNRIYRIQDITRNTHVFTEGCGEI 1366
Query: 424 SAELAETVAKKCGYAIYTPSAFQIRYGGYK-VTLRNN 459
ELA+ + + + T A+Q+R GG K + + NN
Sbjct: 1367 GPELAKHLNENYNFRPST-CAYQVRIGGNKGMLVVNN 1402
Score = 40 (19.1 bits), Expect = 9.0e-23, Sum P(3) = 9.0e-23
Identities = 40/152 (26%), Positives = 64/152 (42%)
Query: 126 LCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSGHSVSIGQSSAICLELPSRALIP 185
L S+ ++ FL+Y VD N S + L R +S Q +I +E ++ LI
Sbjct: 504 LVSNSKELQIFLNYSDVDLDGVRGNPSFLKA-LERLDKYSK---QLESIYIEY-TKVLIK 558
Query: 186 K-ALKDFFHYKESLVQFTLLPGFVFSCNSDLNQDGKHALEMLFHLRECCYDPVSWLRE-- 242
L + T L + S N + N+ LE+ +++ D S +
Sbjct: 559 LYELLSVLSTEGPKQVLTGLDLLMQSTNQE-NELYNKLLELRYYISGQYEDRESNFEKGS 617
Query: 243 -QYRKHVSSGQFPTSPAVALDGGLIYVNKILV 273
+YRK +SS ++ S A DG L +ILV
Sbjct: 618 TRYRKLISSLEYAISDAS--DGELQKDLRILV 647
>ASPGD|ASPL0000071805 [details] [associations]
symbol:rrpB species:162425 "Emericella nidulans"
[GO:0005724 "nuclear telomeric heterochromatin" evidence=IEA]
[GO:0005721 "centromeric heterochromatin" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0031380 "nuclear RNA-directed
RNA polymerase complex" evidence=IEA] [GO:0003968 "RNA-directed RNA
polymerase activity" evidence=IEA] [GO:0045141 "meiotic telomere
clustering" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0031048 "chromatin silencing by
small RNA" evidence=IEA] [GO:0031060 "regulation of histone
methylation" evidence=IEA] [GO:0071585 "detoxification of cadmium
ion" evidence=IEA] [GO:0034613 "cellular protein localization"
evidence=IEA] [GO:0071276 "cellular response to cadmium ion"
evidence=IEA] [GO:0030702 "chromatin silencing at centromere"
evidence=IEA] InterPro:IPR007855 Pfam:PF05183 EMBL:BN001303
GO:GO:0003968 PANTHER:PTHR23079 EnsemblFungi:CADANIAT00005632
Uniprot:C8VAM8
Length = 869
Score = 203 (76.5 bits), Expect = 3.4e-21, Sum P(3) = 3.4e-21
Identities = 37/92 (40%), Positives = 56/92 (60%)
Query: 588 QGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYF 647
+G+ ++A+ P LHPG +RV+RAV+ P LHH+ D V+ P G+R + CSGSD DG+ +
Sbjct: 497 EGICILARNPSLHPGGIRVVRAVNAPGLHHLKDIVVLPRTGDRDIASMCSGSDLDGDDFL 556
Query: 648 VCWDHDRIPPLQFQPTAYTPAPEKILARDVTI 679
V WD D +P F+ P +I +T+
Sbjct: 557 VIWDQDLLPDDWFRSFQLRQLPTRISHGVITL 588
Score = 129 (50.5 bits), Expect = 3.4e-21, Sum P(3) = 3.4e-21
Identities = 66/244 (27%), Positives = 108/244 (44%)
Query: 287 LSNRVVRSYPDEIDNFLRLSFVD-EDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRN 345
+SN V+R Y + DNFLR+ F D + +G++++TV +T E TRI +R L+ N
Sbjct: 248 ISNCVIRRYANLADNFLRVRFTDAKHIGRIHATV-----DNTMDEVLTRI-KRALA---N 298
Query: 346 GIVIGDKKFETLAFSNSQERENTLWMFAS-RPELTAADIRERMGD-FRE-IKNVTKYAAR 402
GI IG ++E LAF NS +T + + D E G F + + ++K+ A+
Sbjct: 299 GITIGSTRYEFLAFGNSSSCFSTTRAISGCTAHVKKIDDIEGNGYIFSDGVGRISKFLAQ 358
Query: 403 LGQSFASSREALHVDSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYKVTLRNNMFK 462
+ +S + SA V K G I P A +V +R + FK
Sbjct: 359 IVKSELKIKTPTKEPP-----SAYQFRLVGCK-GMLIVFPQARP-----QEVHIRKSQFK 407
Query: 463 YKSESTSLDILANSKYQREGVARLRL---------DNVFERKQREVVARLDAILTDSSKV 513
+ + S L+I+ S++ + R + D VF K + ++ LD + K
Sbjct: 408 FAALSQGLEIIRWSQFTVASLNRQLILVLSTLGITDKVFHLKLKTMLRNLDEAMESDPKA 467
Query: 514 QEAL 517
L
Sbjct: 468 AHLL 471
Score = 53 (23.7 bits), Expect = 3.4e-21, Sum P(3) = 3.4e-21
Identities = 22/70 (31%), Positives = 32/70 (45%)
Query: 779 PSTTTIKSFAKEGAMQF-----YDTDMEV-NGFKEVAMQFDGF--KYRTEYDNKLGNLMD 830
PSTTT + + G + F D D + N EV GF + + EYD + +
Sbjct: 607 PSTTTRQLYDAVGRIDFGPNIEMDFDKRILNCNVEVHDAIYGFARRLKDEYDIAIRRITA 666
Query: 831 YYGIKTEAEM 840
+ IKTE E+
Sbjct: 667 QHEIKTEFEV 676
Score = 42 (19.8 bits), Expect = 2.7e-12, Sum P(3) = 2.7e-12
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 461 FKYKSESTSLDILANSKYQREGVARLRL 488
FK + S+DI N + R AR+RL
Sbjct: 65 FKDEGNVRSIDIFENFQGNRTTRARIRL 92
>DICTYBASE|DDB_G0280963 [details] [associations]
symbol:rrpC "RNA-directed RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR007855 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF05183 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280963 GO:GO:0005524
GenomeReviews:CM000152_GR EMBL:AAFI02000040 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG1111 GO:GO:0003968 PANTHER:PTHR23079
ProtClustDB:CLSZ2429575 RefSeq:XP_640790.1
ProteinModelPortal:Q54UI6 STRING:Q54UI6 EnsemblProtists:DDB0216193
GeneID:8622843 KEGG:ddi:DDB_G0280963 InParanoid:Q54UI6 OMA:YELFNDY
Uniprot:Q54UI6
Length = 2285
Score = 157 (60.3 bits), Expect = 1.4e-14, Sum P(3) = 1.4e-14
Identities = 30/67 (44%), Positives = 41/67 (61%)
Query: 589 GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFV 648
G + V K PC HPGD+R L+A+D P L+ + + F G P+ +CSGSD DG+ YFV
Sbjct: 1443 GRVAVLKNPCHHPGDVRFLKAIDHPPLNGKRNVLFFSTNGMVPNFKQCSGSDLDGDRYFV 1502
Query: 649 CWDHDRI 655
+D I
Sbjct: 1503 IYDQTLI 1509
Score = 137 (53.3 bits), Expect = 1.4e-14, Sum P(3) = 1.4e-14
Identities = 75/295 (25%), Positives = 131/295 (44%)
Query: 262 DGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLS 321
+ G + +N+I VTPS++ P ++L NR++R + E F+ +F DE+L
Sbjct: 1068 NNGWVLINEIFVTPSRIVLKPPRLTLGNRILRKFSPE--KFILFNFTDENL--------E 1117
Query: 322 PQISSTNGERRTRIYERVLSTLRNGIVI---GDKKFETLAFSNSQERENTLWMFAS---- 374
P T+ ER+ + NGI I KK+ + S SQ R + W
Sbjct: 1118 PFRGLNKSSPLTKTIERIFN---NGIEIIQGSGKKYFFIGCSQSQVRNYSAWFVLEDKVT 1174
Query: 375 --RPELTAADIR-ERMGDFREIKNVTK-YAARLGQSFAS---------SREALHVDSNIG 421
+ L + I+ E + + +N+ ++ L S+E + G
Sbjct: 1175 NEKSALNWSGIKYESLQMIKVFRNLCLLFSTTLKSQVIYKIEMIPDIISKEGHNFTEGCG 1234
Query: 422 KISAELAETVAKKCGYAIYTPSAFQIRYGGYKVTLRNNMFKYKSESTSLDILAN-SKYQR 480
I ++L E + ++ Y T A+QIR GG K L + + SL I + SK++
Sbjct: 1235 FIGSKLVELINQQNNYNSST-CAYQIRLGGSKGVL---VLNENIDEMSLQIRPSMSKFEL 1290
Query: 481 EGVARLRLDNVFERKQREVVARLDAILTDSSKV-QEALELMSSA--ENTNVLKEL 532
+ + +LD E K E+V+ A T K+ ++A+ L+S+A E++ L+ L
Sbjct: 1291 DYKSG-QLDE--EHKTLEIVS---ASTTSRCKLNRQAITLLSNAGVEDSTFLQML 1339
Score = 119 (46.9 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 61/251 (24%), Positives = 103/251 (41%)
Query: 625 PAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEE 684
P GE N G + + + D+D P + P K+ D+ +++V++
Sbjct: 1518 PYLGEEQTVNPLIGEEDSDDDQYENDDNDITIPTSTTTKSTNNTPTKL--SDIYLKNVDK 1575
Query: 685 YFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIP--- 741
LG I N H+ A S+ +K S + +I D KT V IP
Sbjct: 1576 --------SKLGTISNTHL--AISDIEKVSSINSIKVAIQCAIEVDSVKTSVHGIIPRDV 1625
Query: 742 -SRLRVKIYPDFME-KQDKT----------WYESQHIVGNLYREVNGIAPSTTTIKSFAK 789
S L+ K YP FM+ K T +Y S ++G +Y A + F
Sbjct: 1626 KSILKEKGYPHFMKIKNGSTFEYKGGNQRKYYISDRVIGKIYDS----AENLLWFGDFLP 1681
Query: 790 EGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMA 849
E + D + V G+KE + + F +Y +K+ +++ +G ++E ++L I M
Sbjct: 1682 EAKV---DESLLVQGYKEY-LNHENFTTYMDYKSKINSILRRFGAQSEEDLL---IGFMD 1734
Query: 850 KSFDKKRDLEA 860
F +K +EA
Sbjct: 1735 PQFSEKLSIEA 1745
Score = 52 (23.4 bits), Expect = 5.3e-06, Sum P(3) = 5.3e-06
Identities = 23/99 (23%), Positives = 50/99 (50%)
Query: 497 REVVARL-DAILTDSSKVQEA-LELMSSAE---NTNVLKELLN------CGYKPDAEPFL 545
R+ + L +A + DS+ +Q +EL +A+ + N+ KELL Y+ + ++
Sbjct: 1319 RQAITLLSNAGVEDSTFLQMLEVELNQNAQTLVDVNLSKELLGDFFQHITEYELFNDYYI 1378
Query: 546 SMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL 584
+ + S L++++ + I ++ + ++G D GTL
Sbjct: 1379 RSILLKLYKSKLIKIQDKCWIEVKESRNLLGVCDTSGTL 1417
Score = 44 (20.5 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 493 ERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNC 535
E ++ E D I ++K + L+L+S N + + +NC
Sbjct: 355 EEEEEEKEDEDDGIEMKTNKFKSLLKLLSIEIKENNINDKINC 397
Score = 43 (20.2 bits), Expect = 1.4e-14, Sum P(3) = 1.4e-14
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 131 RKFGFFLSYESVDYKLELSNE 151
++FG++++Y +EL NE
Sbjct: 719 KRFGYWINYSHYIDAIELDNE 739
>TAIR|locus:2052020 [details] [associations]
symbol:AT2G19930 species:3702 "Arabidopsis thaliana"
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016441 "posttranscriptional gene silencing" evidence=ISS]
[GO:0009410 "response to xenobiotic stimulus" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0009855 "determination of
bilateral symmetry" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0009944 "polarity specification of
adaxial/abaxial axis" evidence=RCA] [GO:0010014 "meristem
initiation" evidence=RCA] [GO:0010075 "regulation of meristem
growth" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016567 "protein
ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0048522 "positive regulation of cellular process"
evidence=RCA] [GO:0050826 "response to freezing" evidence=RCA]
InterPro:IPR007855 Pfam:PF05183 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003723 GO:GO:0031047 EMBL:AC005169
GO:GO:0003968 KO:K11699 PANTHER:PTHR23079 EMBL:AK229381
IPI:IPI00786210 PIR:H84582 RefSeq:NP_179583.3 UniGene:At.39772
EnsemblPlants:AT2G19930.1 GeneID:816512 KEGG:ath:AT2G19930
TAIR:At2g19930 HOGENOM:HOG000082682 OMA:LANYMAR
Genevestigator:O82188 Uniprot:O82188
Length = 977
Score = 122 (48.0 bits), Expect = 4.5e-06, Sum P(3) = 4.5e-06
Identities = 45/143 (31%), Positives = 71/143 (49%)
Query: 538 KPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL---------EYGQ 588
+P + +LS++ +T N +L+ ++ + +MG +D G L E GQ
Sbjct: 570 EPHLKNYLSILLKT--EKN--DLKA-GKLPVTESYYLMGTVDPTGALKEDEVCVILESGQ 624
Query: 589 --GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVD----CVLFPAKGERPHTNECSGSDQD 642
G ++V + P LH GD+ +L+A V AL V V FP KG R +E +G D D
Sbjct: 625 ISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFD 684
Query: 643 GEIYFVCWDHDRIPPL--QFQPT 663
G++YF+ R P L F+P+
Sbjct: 685 GDMYFI----SRNPELLENFKPS 703
Score = 77 (32.2 bits), Expect = 4.5e-06, Sum P(3) = 4.5e-06
Identities = 40/158 (25%), Positives = 73/158 (46%)
Query: 711 DKA-MSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGN 769
+KA M + +L+ + D K G +P++L+ I+P +ME+ K ++S I+G
Sbjct: 772 EKAEMKKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHYMERDKK--FQSTSILGL 829
Query: 770 LYREVNGIAPSTTTIKSFAKE-GAMQFYDTDMEVNGF--KEVAMQFDGFKYRTEYDNKLG 826
++ V TT S + E + ++ D V+ F ++ + +D YRTE +
Sbjct: 830 IFDFVKS---QTTEEPSPSSEISKLPCFE-DEPVSEFHMQKCRLWYDN--YRTEMTQAMK 883
Query: 827 NLMDYYGIKTEAEMLSRCIMEM--AKSF-DKKRDLEAI 861
D ++ E++ R E A F D K+ LE +
Sbjct: 884 TDKD----ESANEVIQRYKQEFYGAAGFEDSKKSLEEL 917
Score = 43 (20.2 bits), Expect = 4.5e-06, Sum P(3) = 4.5e-06
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 344 RNGIVIGDKKFETLAFSNSQERE 366
+NGI+IG ++++ F + + E
Sbjct: 272 KNGIMIGLRRYQFFVFKDGGKEE 294
>TAIR|locus:2052030 [details] [associations]
symbol:AT2G19920 species:3702 "Arabidopsis thaliana"
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0016441 "posttranscriptional gene silencing" evidence=ISS]
InterPro:IPR007855 Pfam:PF05183 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003723 GO:GO:0031047 EMBL:AC005169
GO:GO:0003968 KO:K11699 PANTHER:PTHR23079 IPI:IPI00546115
PIR:G84582 RefSeq:NP_179582.2 UniGene:At.50085 PRIDE:O82189
EnsemblPlants:AT2G19920.1 GeneID:816511 KEGG:ath:AT2G19920
TAIR:At2g19920 eggNOG:NOG266676 InParanoid:O82189 OMA:MSIHEAR
PhylomeDB:O82189 Genevestigator:O82189 Uniprot:O82189
Length = 927
Score = 120 (47.3 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 44/140 (31%), Positives = 71/140 (50%)
Query: 524 ENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRT---RA-RIFIQNGQAMMGCLD 579
++ N L +++ G D EP+L + S LL+L +A ++ I +MG +D
Sbjct: 558 DDKNAL-QMIMAGIPLD-EPYLK-----HYLSKLLKLEKDDLKAGKLPIDESYYLMGTVD 610
Query: 580 EKGTLEYGQ--GL-----MVVAKKPCLHPGDMRVLRAVDVPALHHMVDC----VLFPAKG 628
G L+ + GL ++V + P LH GD+ +L+A V +L V V FP KG
Sbjct: 611 PTGELKEDEVSGLAKSQDVLVYRNPGLHFGDIHILKATYVKSLEQYVGNSKYGVFFPQKG 670
Query: 629 ERPHTNECSGSDQDGEIYFV 648
R +E +G D DG++YF+
Sbjct: 671 PRSLGDEIAGGDFDGDMYFI 690
Score = 72 (30.4 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 730 DFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAK 789
D KTG +P ++V ++P +ME+ +KT ++S I+G ++ V+ TT +K
Sbjct: 792 DAPKTGTEVNLPLDVKVDLFPHYMER-NKT-FKSTSILGLIFDTVDFHNAEDTTPSGISK 849
Score = 45 (20.9 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 336 YERVLSTLRNGIVIGDKKFETLAFSNSQERE 366
Y + +NGI++G ++++ F + + E
Sbjct: 268 YSKYKEIAKNGIMVGLRRYQFFVFKDGGKAE 298
>TAIR|locus:2052040 [details] [associations]
symbol:AT2G19910 species:3702 "Arabidopsis thaliana"
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016441 "posttranscriptional gene silencing" evidence=ISS]
InterPro:IPR007855 Pfam:PF05183 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003723 GO:GO:0031047 EMBL:AC005169
GO:GO:0003968 KO:K11699 PANTHER:PTHR23079 IPI:IPI00534018
PIR:F84582 RefSeq:NP_179581.2 UniGene:At.52837 PaxDb:O82190
PRIDE:O82190 EnsemblPlants:AT2G19910.1 GeneID:816510
KEGG:ath:AT2G19910 TAIR:At2g19910 eggNOG:NOG279775
InParanoid:O82190 OMA:IFYSERA PhylomeDB:O82190
Genevestigator:O82190 Uniprot:O82190
Length = 992
Score = 117 (46.2 bits), Expect = 6.1e-05, Sum P(3) = 6.1e-05
Identities = 37/112 (33%), Positives = 57/112 (50%)
Query: 584 LEYGQ--GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVD----CVLFPAKGERPHTNECS 637
L GQ G ++V + P LH GD+ VL+A V AL V V FP KG R +E +
Sbjct: 631 LHSGQISGDVLVYRNPGLHFGDIHVLKATYVKALEDYVGNAKFAVFFPQKGPRSLGDEIA 690
Query: 638 GSDQDGEIYFVCWDHDRIPPLQ-FQPTAYTPAPEKILA----RDVTIEDVEE 684
G D DG++YF+ + + + +P + P KI +++ E++EE
Sbjct: 691 GGDFDGDMYFISRNPKLLEHFKPSEPWVSSSKPSKIYCGRKPSELSEEELEE 742
Score = 71 (30.1 bits), Expect = 6.1e-05, Sum P(3) = 6.1e-05
Identities = 20/70 (28%), Positives = 33/70 (47%)
Query: 709 EPDKAMSNRCPDLVKLSSIVGDF---SKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQH 765
E K R +++KL I D K G +P L +K +P +ME+ K + S
Sbjct: 779 ESAKEKYERKKNILKLIDIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTS 838
Query: 766 IVGNLYREVN 775
I+G ++ V+
Sbjct: 839 ILGLIFDTVD 848
Score = 43 (20.2 bits), Expect = 6.1e-05, Sum P(3) = 6.1e-05
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 335 IYERVLSTLRNGIVIGDKKFETLAFSNSQERE 366
+Y +NGI++G +++ F + + E
Sbjct: 267 LYSTYKGIAKNGIMVGLRRYRFFVFKDGGKEE 298
Score = 37 (18.1 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 235 DPVSWLREQYRKHVSSGQFPTSPAVALDG 263
D +S+L + R + +G+FP + + G
Sbjct: 586 DRLSYLLKTERNALKAGRFPIDESYYIMG 614
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.135 0.396 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 890 862 0.00083 122 3 11 22 0.38 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 18
No. of states in DFA: 623 (66 KB)
Total size of DFA: 418 KB (2202 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 69.99u 0.36s 70.35t Elapsed: 00:00:05
Total cpu time: 70.00u 0.36s 70.36t Elapsed: 00:00:05
Start: Fri May 10 06:33:37 2013 End: Fri May 10 06:33:42 2013