BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035741
(890 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224111420|ref|XP_002315849.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222864889|gb|EEF02020.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1102
Score = 1020 bits (2637), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 547/1049 (52%), Positives = 672/1049 (64%), Gaps = 173/1049 (16%)
Query: 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAAD 58
MAK I LYGF ++ P +KEFLEE++GEGTV V V Q K GSR +AIVEFTT EAA
Sbjct: 1 MAKTISLYGFPTVEPPDDIKEFLEEYSGEGTVVAVHVAQPKSAGSRTNAIVEFTTSEAAQ 60
Query: 59 FIK--CLARERLSYGNSFLKASSAKRRTPHFAKRTPHYKLGGDLKLNFGCQISKDKFSVF 116
IK L E L YGNS+LKA R T K ++ L+FGCQ+SK+KFSV
Sbjct: 61 NIKLKSLDDEGLWYGNSYLKARDVYRDTVPMRKAFQTQYSMDNITLHFGCQVSKEKFSVL 120
Query: 117 WSQENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSGH------------ 164
W+Q++VSVK +LRKF FFL++ S +YKLELS E+I+QIELHRP G
Sbjct: 121 WTQKDVSVKFGVELRKFHFFLTHLSKNYKLELSYENIFQIELHRPRGKTKKYLLVQMLGG 180
Query: 165 ------------------------------SVSIGQSSAICLELPSRALIPKALKDFFHY 194
S IGQSSA+CLELP + +P ++F Y
Sbjct: 181 PKIFKKDTSKLSNFKEATDDQWIRDVDFSPSYCIGQSSALCLELPPNSQLPNFQENFVCY 240
Query: 195 KESLVQFTLLPGFVFSCNSDLN-----------------------QDG------------ 219
KE F L G F C SDL Q G
Sbjct: 241 KEDEGHFILEKGSTFCCKSDLVPILSAAQVSELPYDIVFKVNSLVQHGCLPGPALDARFF 300
Query: 220 ---------------KHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGG 264
+HALE L HL+ECCYDP WLREQY+K++++G+ PT PA+A+D G
Sbjct: 301 RLINPSKIRIAHAYIQHALEKLSHLKECCYDPARWLREQYQKYLTTGRLPTPPAIAVDDG 360
Query: 265 LIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQI 324
L+++ ++ +TP+K+YFCGP+++LSNRV+R YP +IDNFLR+SFVDEDL KL+S +SP+
Sbjct: 361 LVFLRRVQITPTKLYFCGPDVNLSNRVLRKYPGDIDNFLRVSFVDEDLDKLFSANISPRT 420
Query: 325 SSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIR 384
S R+T IY+R+LS RNGI IG KKFE L FS SQ RE++LWMFASRP LTAADIR
Sbjct: 421 FSAIEGRQTNIYQRILSVQRNGITIGSKKFEFLGFSQSQVRESSLWMFASRPGLTAADIR 480
Query: 385 ERMGDFREIKNVTKYAARLGQSFASSREALHVDSN----------------------IGK 422
E MGDFREIKNV KYAARLGQSF+SSRE+ ++D + IGK
Sbjct: 481 EWMGDFREIKNVAKYAARLGQSFSSSRESFNIDRHEIEIIPDIEVKSGGVNYVFSDGIGK 540
Query: 423 ISAELAETVAKKCGYAIYTPSAFQIRYGGY------------KVTLRNNMFKYKSESTSL 470
ISAELA+++A+K +TPSAFQIRYGGY K++LR +M KYKS +TSL
Sbjct: 541 ISAELADSIARKLRLRSFTPSAFQIRYGGYKGVVAVDPTSSMKLSLRRSMSKYKSTNTSL 600
Query: 471 DILANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEALELMS 521
DIL SKY+ RE + L D VFERKQ+E +A+LDAILTD K QEALELM+
Sbjct: 601 DILDWSKYRACFLNREVIILLSTLGVKDQVFERKQKEAIAQLDAILTDPIKAQEALELMA 660
Query: 522 SAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEK 581
EN VL +L CGYKP AEPFL+MM +TF A LL+LRT++RIF+ NG+AM GCLDE
Sbjct: 661 GGENARVLNGMLACGYKPGAEPFLAMMLETFRALKLLDLRTKSRIFVPNGRAMTGCLDET 720
Query: 582 GTLEYGQ------------------------------GLMVVAKKPCLHPGDMRVLRAVD 611
TLEYGQ G +VVAK PCLHPGD+++L+AVD
Sbjct: 721 RTLEYGQAFVQYSRARLSKSHDHFKGGKTDQHTLIVRGKIVVAKNPCLHPGDVQILKAVD 780
Query: 612 VPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEK 671
VPALHHMVDC++FP KG+RPHTNECSGSD DG++YFVCWD D IPP +F P YT
Sbjct: 781 VPALHHMVDCIVFPQKGKRPHTNECSGSDLDGDVYFVCWDTDLIPPQKFPPMDYTAPQTT 840
Query: 672 ILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDF 731
IL DVTIE+V+EYFADY++NDSLGIIC AHVV+A SEPD A S +C +L +LSSI DF
Sbjct: 841 ILDHDVTIEEVQEYFADYLLNDSLGIICTAHVVFADSEPDMARSEKCIELAQLSSIAVDF 900
Query: 732 SKTGVAATIPSRLRVKIYPDFMEKQ--DKTWYESQHIVGNLYREVNGIAPSTTTIKSFAK 789
KTGV A IP LRVK YPDFMEK T Y SQ ++G L+R V IAP T+ ++ F K
Sbjct: 901 PKTGVPAKIPKELRVKEYPDFMEKAAYKHTTYVSQRVLGKLFRAVRDIAPDTSPVRPFTK 960
Query: 790 EGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMA 849
E A + YD DMEV+GFK+ + F Y++EYDNKLGN+MDYYGIKTEAE++ CIM M
Sbjct: 961 EAAKRSYDPDMEVDGFKDYINE--AFYYKSEYDNKLGNMMDYYGIKTEAEIIGGCIMRMG 1018
Query: 850 KSFDKKRDLEAISFSVRSLRKEARAWFNK 878
+SFDKK+DLE I+FSV SLRK+ARAWFN+
Sbjct: 1019 RSFDKKKDLEGINFSVSSLRKQARAWFNE 1047
>gi|225424397|ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
Length = 1121
Score = 979 bits (2532), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 531/1059 (50%), Positives = 663/1059 (62%), Gaps = 176/1059 (16%)
Query: 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAAD 58
M+K I +YGF S+ S +KEFLE++TGEGT+ +E+ Q + S HA V+FT+ E A+
Sbjct: 1 MSKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIKQPRSGASMTHAKVQFTSFELAE 60
Query: 59 FIKCLARERLSYGNSFLKASSAKRRTPHFAKRTPHYKLGGDLKLNFGCQISKDKFSVFWS 118
FI L ++++ YG ++LKA K + L+FGCQ+S ++F V W
Sbjct: 61 FIITLCKKKVWYGRNYLKAREMDLDI--IPKPRAFLHSMDRITLHFGCQMSDERFCVLWK 118
Query: 119 QENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSGH-------------- 164
NVSVK S LRKF FFLS+ S +YKLELS E+IWQI+L P G
Sbjct: 119 AINVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLLIQLLGAPQ 178
Query: 165 -----------------------------SVSIGQSSAICLELPSRALIPKALKDFFHYK 195
S IGQS A+CLELP + +P ++F +YK
Sbjct: 179 IYEKDVPVLSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLPNFRENFAYYK 238
Query: 196 ESLVQFTLLPGFVFSCN-----------------------SDLNQDG------------- 219
E+ +F L G +S N + L Q+G
Sbjct: 239 ENDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQNGCLSGPTLDTSFFR 298
Query: 220 ------------KHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIY 267
+HALE L+HL+ECCY+PV WL EQYR +V SPA++LD GL+Y
Sbjct: 299 LVDPERFPISFIEHALEKLYHLKECCYEPVRWLSEQYRTYVKK-PVAGSPAISLDTGLVY 357
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
V ++ +TP KVYFCGPE+++SNRV+R+YP++IDNFLR+SF+DE+L K++STV+SP++S
Sbjct: 358 VRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEKIHSTVISPRMSKE 417
Query: 328 NGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERM 387
RRT +Y R+LS L+NGIVIGDKKF+ LAFS+SQ R+N+ WMFASRP LTAA+IR M
Sbjct: 418 G--RRTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASRPGLTAAEIRSWM 475
Query: 388 GDFREIKNVTKYAARLGQSFASSREALHVDSN----------------------IGKISA 425
GDF +I+NV KYAARLGQSF+SS+E L V + IGKIS
Sbjct: 476 GDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHKGRTTYVFSDGIGKISP 535
Query: 426 ELAETVAKKCGYAIYTPSAFQIRYGGYK------------VTLRNNMFKYKSESTSLDIL 473
+LA VA KCG TPSAFQIRYGGYK ++LR +MFKY+S++T+LD+L
Sbjct: 536 QLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESDNTNLDVL 595
Query: 474 ANSKYQREGVARLRL---------DNVFERKQREVVARLDAILTDSSKVQEALELMSSAE 524
A SKYQ + R + D+VFE+KQR V +LD IL D QEALELMS E
Sbjct: 596 AWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVAAQEALELMSPGE 655
Query: 525 NTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL 584
NTNVLKE+L CGYKPDAEPFLSMM QTF A+ LLELRT+ RIF+ NG++MMGCLDE TL
Sbjct: 656 NTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTL 715
Query: 585 EYG---------------------------------QGLMVVAKKPCLHPGDMRVLRAVD 611
EYG +G +VVAK PCLHPGD+RVL AV+
Sbjct: 716 EYGEVFVQISGTGGRQSFGDSLMFRGSGSHHDNFILEGKIVVAKNPCLHPGDVRVLWAVN 775
Query: 612 VPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEK 671
VP LHHMVDCV+FP KG+RPH NECSGSD DG+IYFVCWD D IPP Q P YTPAP K
Sbjct: 776 VPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQINPMDYTPAPTK 835
Query: 672 ILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDF 731
+L DV IE+VEEYF +YIVNDSLGII NAH V+A E DKA + C +L KL SI DF
Sbjct: 836 VLDHDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDF 895
Query: 732 SKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEG 791
KTGV A IP LRVK YPDFMEK DK YESQ ++G L+REV IAP I+SF ++
Sbjct: 896 PKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDV 955
Query: 792 AMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKS 851
A Q YD DMEV GF++ D F Y++EYD KLGNLMDYYGIKTE+E+LS IM M+KS
Sbjct: 956 ARQSYDPDMEVVGFEDYVS--DAFYYKSEYDYKLGNLMDYYGIKTESEILSGSIMRMSKS 1013
Query: 852 FDKKRDLEAISFSVRSLRKEARAWFNKKKNDSDSSHKDV 890
FD+++D EAI +V+SLRKEAR WFNK +++DS DV
Sbjct: 1014 FDRRKDAEAIGLAVKSLRKEARTWFNKMGSETDSEADDV 1052
>gi|224099569|ref|XP_002311535.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222851355|gb|EEE88902.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1139
Score = 976 bits (2522), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 533/1040 (51%), Positives = 661/1040 (63%), Gaps = 171/1040 (16%)
Query: 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQ--NKGSRAHAIVEFTTVEAADF 59
K I LY F ++ + + +KEFLEE++G+GTV V+V Q ++GSR A V+FTT EAA
Sbjct: 41 GKTISLYRFRTVETSEDIKEFLEEYSGDGTVVSVDVDQTISEGSRTKAKVQFTTSEAAQK 100
Query: 60 IKCLARERLSYGNSFLKASSAKRRTPHFAKRTPHYKLGGDLKLNFGCQISKDKFSVFWSQ 119
+K S+LK + Y + ++ L+FGCQ+SK+KF W++
Sbjct: 101 VKL---------RSYLKVRDMDYDIVP-TRMAAEYTID-NITLHFGCQVSKEKFYALWNK 149
Query: 120 ENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSGH--------------- 164
ENVSVK RK FL+Y S YKLELS E+IWQIELHRP G
Sbjct: 150 ENVSVKFGFGNRKIYLFLTYLSTKYKLELSYENIWQIELHRPRGQAKKFLIVQMLGAAKI 209
Query: 165 -----------------SVSIGQSSAICLELPSRALIPKALKDFFHYKESLVQFTLLPG- 206
S IGQSSA+CLELP +P ++F YKE +F L G
Sbjct: 210 LKKDTDDQWVRDVDFSPSYCIGQSSALCLELPRSGQLPNFQENFPCYKEDEGRFFLEVGS 269
Query: 207 -----------------------FVFSCNSDLNQDG------------------------ 219
VF NS L Q G
Sbjct: 270 TFCRVSDLVPILREAQGIELPYDIVFKVNS-LVQHGYLPGPALDASFYRLINPSRVNIAH 328
Query: 220 -KHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKV 278
++ALE L H ECCYDPV WLRE+YRK +S+G+ PT PAVA+D GL++V ++ +TP+KV
Sbjct: 329 IQNALEKLHHSMECCYDPVRWLREEYRKCISTGRLPTPPAVAVDDGLVHVRRVQITPTKV 388
Query: 279 YFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYER 338
YF GPE++LSNRV+R YPD+IDNFLR+SFVDEDL KL+ST +SP+ S R+T+IY+R
Sbjct: 389 YFRGPEVNLSNRVLRKYPDDIDNFLRVSFVDEDLDKLFSTNISPRTFSAIEGRQTKIYQR 448
Query: 339 VLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTK 398
+LST RNGIVIG KKFE L FS+SQ RE++LWMFASR L AADIR MGDFREIKNV K
Sbjct: 449 ILSTQRNGIVIGSKKFEFLGFSSSQLRESSLWMFASRTGLRAADIRRWMGDFREIKNVAK 508
Query: 399 YAARLGQSFASSREALHVD----------------------SNIGKISAELAETVAKKCG 436
YAARLGQSF SSRE+ ++D IGKISA LA ++A+K G
Sbjct: 509 YAARLGQSFGSSRESFNIDEKEIEKIPDIEVRSGGVDYVFSDGIGKISAALAHSIAQKFG 568
Query: 437 YAIYTPSAFQIRYGGY------------KVTLRNNMFKYKSESTSLDILANSKYQ----- 479
+ +TPSAFQIRYGGY K++LR +M KYKS +TSLDIL SKYQ
Sbjct: 569 FLSFTPSAFQIRYGGYKGVVAVDPTSLKKLSLRRSMSKYKSTNTSLDILGWSKYQACYLN 628
Query: 480 REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNC 535
RE + L D++F+RKQ+E +A+L+AILTD S QEALELM+ E+TNVLKE+L C
Sbjct: 629 REVITLLSTLGVRDHIFQRKQKEAIAQLNAILTDPSSAQEALELMAPGESTNVLKEMLAC 688
Query: 536 GYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ------- 588
GYKP AEPFL+MM QTF AS LL+LRTRARIFI G+AMMGCLDE TL YGQ
Sbjct: 689 GYKPGAEPFLAMMLQTFCASKLLDLRTRARIFIPKGRAMMGCLDETRTLGYGQAFVQYSS 748
Query: 589 -----------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFP 625
G ++VAK PCLHPGD+RVL AV+VPALHHMVDC++FP
Sbjct: 749 ARHGQFRDHSRGGEAVRNTQILKGKLIVAKNPCLHPGDVRVLEAVNVPALHHMVDCIVFP 808
Query: 626 AKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEY 685
KG+RPH NECSGSD DG++YFVCWD D IPP F P YT AP IL DVTIE+V+EY
Sbjct: 809 QKGKRPHANECSGSDLDGDVYFVCWDPDLIPPRTFPPMDYTAAPTTILDHDVTIEEVQEY 868
Query: 686 FADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLR 745
F DY++NDSLGIICNAH V+A +P A S C +L +LSSI DF KTGV A IP LR
Sbjct: 869 FTDYLLNDSLGIICNAHTVFADRDPLMARSKECIELARLSSIAVDFPKTGVPAKIPRELR 928
Query: 746 VKIYPDFMEK-QDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNG 804
VK YPDFMEK DK YESQ ++G L+R+V IAP T+ ++SF KE A + YD DMEV+G
Sbjct: 929 VKEYPDFMEKAADKRTYESQRVLGKLFRDVRDIAPDTSPVRSFTKEMARRSYDPDMEVDG 988
Query: 805 FKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRDLEAISFS 864
F++ + F Y++ YDNKLGN+MDYYGIKTEAE++S IM++ KSFDKKRD ++I++S
Sbjct: 989 FQKHIDE--AFHYKSVYDNKLGNMMDYYGIKTEAEIISGSIMKVGKSFDKKRDFDSINYS 1046
Query: 865 VRSLRKEARAWFNKKKNDSD 884
+RSLRK+ARAWF++ N D
Sbjct: 1047 IRSLRKQARAWFDESDNSPD 1066
>gi|4138282|emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
Length = 1116
Score = 969 bits (2504), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/1053 (50%), Positives = 660/1053 (62%), Gaps = 177/1053 (16%)
Query: 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSR-AHAIVEFTTVEAADF 59
M K I ++GF L S +AVK+FLE HTG GTV +EV Q+KG R A A V+F ++A+F
Sbjct: 1 MGKTIQVFGFPYLLSAEAVKKFLENHTGNGTVYALEVKQSKGGRRAFAKVQFANNKSAEF 60
Query: 60 IKCLARERLSYGNSFLKASSAKRRTPHFAKRTPHYKLGGDLKLNFGCQISKDKFSVFWSQ 119
I LA + L YG S+LKA K T RT + G + LNFGCQIS KF+V S+
Sbjct: 61 IIDLASKGLYYGPSYLKAWEMK--TDIVQPRTYVEHMDG-VTLNFGCQISDKKFAVLGSK 117
Query: 120 ENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSGHSVS------------ 167
+ VS+K L+K FFLS+ S DYKL+LS E+IWQ+ LHRP G +
Sbjct: 118 D-VSIKFGIGLKKIYFFLSHASADYKLQLSYENIWQVVLHRPYGQNAQFLLLQLFGAPRI 176
Query: 168 ------------------------------IGQSSAICLELPSRALIPKALKDFFHYKES 197
IG SS++CLE + +P + FF+YKES
Sbjct: 177 YKRLEDSCYSFFKETPDDQWVRTTDFTPSWIGLSSSLCLEFRNGVQLPNFSESFFYYKES 236
Query: 198 LVQFTLLPGFVFSCN-------------------------SDLNQDG------------- 219
+ QF L GF FS + S L Q G
Sbjct: 237 MNQFILQTGFTFSFSQKLALVPIVHLPEGIELPYKILFKISSLIQHGCFPGLALNFNFFQ 296
Query: 220 ------------KHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIY 267
+HALE L++L+ECCYDPV WL EQY +++ Q P SP + LD GL+Y
Sbjct: 297 LVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKGRQLPKSPPITLDDGLVY 356
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
V +++VTP KVYFCGPE+++SNRV+R+Y ++I+NFLR+SFVDE+ K++ST L P+ S+
Sbjct: 357 VRRVVVTPCKVYFCGPEVNVSNRVLRNYSEDINNFLRVSFVDEEWEKIHSTDLLPRASTG 416
Query: 328 NGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERM 387
NG R T IYER+LSTLRNG +IGDK+FE LAFS+SQ R+N++WMFASRP LTA DIR M
Sbjct: 417 NGTR-TDIYERILSTLRNGFIIGDKRFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWM 475
Query: 388 GDFREIKNVTKYAARLGQSFASSREALHV----------------------DSNIGKISA 425
GDFR+I+NV KYAARLGQSF SSRE L V IGKISA
Sbjct: 476 GDFRQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVACSLHGTNYIFSDGIGKISA 535
Query: 426 ELAETVAKKCGYAIYTPSAFQIRYGGYK------------VTLRNNMFKYKSESTSLDIL 473
+ A V KCG YTPS+FQIRYGGYK ++LR +M KY+S + LD+L
Sbjct: 536 DFAHRVTIKCGLQ-YTPSSFQIRYGGYKGVVAVDPYSSMKLSLRKSMLKYESNNIKLDVL 594
Query: 474 ANSKYQ-----REGVARLR----LDNVFERKQREVVARLDAILTDSSKVQEALELMSSAE 524
SKYQ R+ V L +D+V E+KQ E V +LDAIL DS K QEALELMS E
Sbjct: 595 GWSKYQPCYLNRQLVTLLSTLGVIDDVLEQKQNEAVDQLDAILHDSLKAQEALELMSPGE 654
Query: 525 NTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL 584
NTN+LKE+LNCGY PDAEPFLSMM QTF AS LL+LRTR RIFI NG+ MMGCLDE TL
Sbjct: 655 NTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPNGRTMMGCLDESRTL 714
Query: 585 EYGQ---------------------------------GLMVVAKKPCLHPGDMRVLRAVD 611
EYGQ G +VVAK PCLHPGD+RVLRAVD
Sbjct: 715 EYGQVFVQFSGAGRRQFFEESHPFNDSGSANCDFILKGNVVVAKNPCLHPGDIRVLRAVD 774
Query: 612 VPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEK 671
VPALHHMVDCV+FP KG+RPH NECSGSD DG+IYFVCWD D IPP Q Q YTPAP
Sbjct: 775 VPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLIPPRQVQSMDYTPAPTT 834
Query: 672 ILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDF 731
L DVTIE+VEEYF +YI+NDSLGII NAHVV+A EPD AMS+ C L +L SI DF
Sbjct: 835 QLDHDVTIEEVEEYFTNYIINDSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDF 894
Query: 732 SKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEG 791
KTGV A IPS+LR K YPDFMEK DK Y S+ ++G L+++V P ++I +F ++
Sbjct: 895 PKTGVPAEIPSQLRPKEYPDFMEKPDKPTYPSEKVIGKLFQKVKNKTPQASSIATFTRDV 954
Query: 792 AMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKS 851
A + YD+DM V+GF++ + F Y++EYDNKLGNLMDYYGIKTEAE+LS IM+ +K+
Sbjct: 955 ARKSYDSDMIVDGFEDYIDE--AFYYKSEYDNKLGNLMDYYGIKTEAEILSGGIMKASKT 1012
Query: 852 FDKKRDLEAISFSVRSLRKEARAWFNKKKNDSD 884
FD+++D EAI +VR LRKEARAWF ++ + D
Sbjct: 1013 FDRRKDAEAIGVAVRCLRKEARAWFKRRSDIDD 1045
>gi|224099571|ref|XP_002311536.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222851356|gb|EEE88903.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1133
Score = 968 bits (2502), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/1066 (49%), Positives = 659/1066 (61%), Gaps = 180/1066 (16%)
Query: 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAAD 58
M+K + + GF S + AV+ FLE HTG GTV +++ + + G+R +AIV+FTT AA+
Sbjct: 1 MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTGGARKYAIVQFTTTRAAE 60
Query: 59 FIKCLARERLSYGNSFLKASSAKRRTPHFAKRTPHYKLGGDLKLNFGCQISKDKFSVFWS 118
I LA RL YG+S+L A R + H + L+FG Q SK+KFS WS
Sbjct: 61 QIISLANPRLWYGHSYLNARPMDRDIIPQPRSFLHTM--ESVTLHFGYQTSKEKFSAVWS 118
Query: 119 QENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSGHSV------------ 166
NVSV +RK FFLS+ +YKL L E+IWQIELHRP G +V
Sbjct: 119 GNNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPR 178
Query: 167 ---------------------------------------SIGQSSAICLELPSRALIPKA 187
IG SS++CLELP+ +P
Sbjct: 179 IYERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPNF 238
Query: 188 LKDFFHYKESLVQFTLLPGFVFSCNSDLN-----------------------QDG----- 219
++FF+YKE+ F L G FS N DL Q+G
Sbjct: 239 NENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGS 298
Query: 220 --------------------KHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAV 259
++ALE L+HL+ECCY+P W EQY+K+++SG P SP +
Sbjct: 299 MLDDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPVL 358
Query: 260 ALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTV 319
+LD GL+YV K+ +TP KV+FCGPE+++SNRV+R Y ++IDNFLR+SFVDE+L K++ST
Sbjct: 359 SLDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHSTD 418
Query: 320 LSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELT 379
+SP+ SS N RRT IY R+LSTL+NGIVIGDKKFE LAFS+SQ REN+ WMFASR LT
Sbjct: 419 VSPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGLT 478
Query: 380 AADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN-------------------- 419
AADIR MG F +I+NV +YAARLGQSF SS E L V S+
Sbjct: 479 AADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRYLFS 538
Query: 420 --IGKISAELAETVAKKCGYAIYTPSAFQIRYGGY------------KVTLRNNMFKYKS 465
IGKISAE A VA KCG +TPSAFQIRY GY K++LR +MFKY+S
Sbjct: 539 DGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYES 598
Query: 466 ESTSLDILANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEA 516
E+T LD+LA+SKYQ R+ + L D+ FERKQRE V +LDA+LTD + QEA
Sbjct: 599 ENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQEA 658
Query: 517 LELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMG 576
LELMS ENTN+LKE+L CGY+PDAEPFLSMM QTF AS LLELRT+ RIFI NG++MMG
Sbjct: 659 LELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMG 718
Query: 577 CLDEKGTLEYGQ--------------------------------GLMVVAKKPCLHPGDM 604
CLDE TLE+GQ G +VVAK PCLHPGD+
Sbjct: 719 CLDETRTLEHGQVFVKFSGSRFRNLYDSSDMFSERGRGQCYLIKGSVVVAKNPCLHPGDL 778
Query: 605 RVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTA 664
R+L+AVDVPALHHMVDCV+FP KG RPH NECSGSD DG+IYFVCWD + IP Q P
Sbjct: 779 RILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQISPMD 838
Query: 665 YTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKL 724
YTP P L DVTIE+VEEYF +YIVNDSLG+I NAH +A E KAMS C +L +
Sbjct: 839 YTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVELARK 898
Query: 725 SSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTI 784
SI DF KTGV A IPS LR + YPDFMEK DK YES++++G L+REV IAP T++I
Sbjct: 899 FSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSSI 958
Query: 785 KSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRC 844
+SF + A Q YD DMEV+GF++ D F Y++ YD KLGNLM+YYGIKTEAE+LS
Sbjct: 959 RSFTSDVARQCYDPDMEVDGFEDYID--DAFYYKSNYDYKLGNLMEYYGIKTEAELLSGS 1016
Query: 845 IMEMAKSFDKKRDLEAISFSVRSLRKEARAWFNKKKNDSDSSHKDV 890
M+M+KSF KKRD EAI +VRSL+KEAR+WFN+K + DS DV
Sbjct: 1017 FMKMSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQADDV 1062
>gi|157152684|gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
Length = 1117
Score = 967 bits (2499), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/1054 (51%), Positives = 655/1054 (62%), Gaps = 178/1054 (16%)
Query: 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSR-AHAIVEFTTVEAADF 59
M K I ++GF L S +AVK FLE HTG GTV +EV Q+KG R A A V+F ++A+
Sbjct: 1 MGKTIQVFGFPYLLSAEAVKTFLENHTGNGTVYALEVKQSKGGRRAFAKVQFANNKSAEI 60
Query: 60 IKCLARERLSYGNSFLKASSAKRRTPHFAKRTPHYKLGGDLKLNFGCQISKDKFSVFWSQ 119
I LA + L YG S+LKA K T RT + G + LNFGCQIS KF+V S+
Sbjct: 61 IIDLASKGLYYGPSYLKAWEMK--TYIVQPRTYVQHMDG-VTLNFGCQISDKKFAVLGSK 117
Query: 120 ENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSGHSVS------------ 167
VS+K L+K FFLSY S DYKL+LS E+IWQ+ LHRP G
Sbjct: 118 V-VSIKFGIGLKKIYFFLSYGSTDYKLQLSYENIWQVVLHRPYGQKAQFLLLQLSGAPRI 176
Query: 168 ------------------------------IGQSSAICLELPSRALIPKALKDFFHYKES 197
IG SS++CLE + +P + FF+YKES
Sbjct: 177 YKRLEDSCYSFFKETPDDQWVRTTDFTPSWIGLSSSLCLEFHNGVRLPNFSESFFYYKES 236
Query: 198 LVQFTLLPGFVFSCN--------------------------SDLNQDG------------ 219
Q L GF FS + S L Q G
Sbjct: 237 ANQVILQTGFTFSFSQKKLALVPIVHLPEGIELPYKILFKISSLIQHGCFPGLALNFNFF 296
Query: 220 -------------KHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLI 266
+HALE L++L+ECCYDPV WL EQY +++ Q P SP++ LD GL+
Sbjct: 297 QLVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKRRQLPKSPSITLDDGLV 356
Query: 267 YVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISS 326
YV ++LVTP KVYFCGPE+++SNRV+R+Y ++IDNFLR+SFVDE+ K++ST L P+ S+
Sbjct: 357 YVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKIHSTDLLPRAST 416
Query: 327 TNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRER 386
NG R T IY R+LSTLRNG VIGDKKFE LAFS+SQ R+N++WMFASRP LTA DIR
Sbjct: 417 GNGVR-TDIYLRILSTLRNGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTW 475
Query: 387 MGDFREIKNVTKYAARLGQSFASSREALHV----------------------DSNIGKIS 424
MG F++I+NV KYAARLGQSF SSRE L V IGKIS
Sbjct: 476 MGGFQQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVVCSLHGTNYIFSDGIGKIS 535
Query: 425 AELAETVAKKCGYAIYTPSAFQIRYGGYK------------VTLRNNMFKYKSESTSLDI 472
A+ A VA KCG YTPS FQIRYGGYK ++LRN+M KY+S + LD+
Sbjct: 536 ADFARRVAVKCGLQ-YTPSCFQIRYGGYKGVVAVDPYSSMKLSLRNSMLKYESNNIKLDV 594
Query: 473 LANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEALELMSSA 523
L SKYQ R+ V L D+VFE+KQ E V +LDAIL D+ K QEALELMS
Sbjct: 595 LGWSKYQPCYLNRQLVTLLSTLGVKDDVFEQKQNEAVDQLDAILHDTLKAQEALELMSPG 654
Query: 524 ENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGT 583
ENTN+LKE+LNCGY PDAEPFLSMM QTF AS LL+LRTR+RIFI NG+ MMGCLDE T
Sbjct: 655 ENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRT 714
Query: 584 LEYGQ---------------------------------GLMVVAKKPCLHPGDMRVLRAV 610
LEYGQ G +VVAK PCLHPGD+RVLRAV
Sbjct: 715 LEYGQVFVQFTGTGRRQFYEESHPFNDSGSTNCDFILEGNVVVAKNPCLHPGDIRVLRAV 774
Query: 611 DVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPE 670
DVPALHHMVDCV+FP KG+RPH NECSGSD DG+IYFVCWD D +PP QFQP YTPAP
Sbjct: 775 DVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLVPPRQFQPMDYTPAPS 834
Query: 671 KILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGD 730
L DVTIE+VEEYF +YIVNDSLGII NAHVV+A EPD AMS+ C L +L SI D
Sbjct: 835 TQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIAVD 894
Query: 731 FSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKE 790
F KTGV A IPS+LR K YPDFMEK DK Y S+ ++G L+++V P ++I +F +
Sbjct: 895 FPKTGVPAEIPSQLRPKEYPDFMEKPDKPTYHSEKVIGKLFQKVKDKTPQASSIANFTMD 954
Query: 791 GAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAK 850
A + YD DM VNGF++ + F Y++EYDNKLGNLMDYYGIKTEAE+LS IM+ +K
Sbjct: 955 VARKSYDGDMIVNGFEDYIDE--AFYYKSEYDNKLGNLMDYYGIKTEAEILSGGIMKASK 1012
Query: 851 SFDKKRDLEAISFSVRSLRKEARAWFNKKKNDSD 884
+FD+++D +AI +VRSLRKEAR WF ++ + D
Sbjct: 1013 TFDRRKDADAIGVAVRSLRKEARTWFKRRSDIDD 1046
>gi|350537951|ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase [Solanum lycopersicum]
Length = 1114
Score = 964 bits (2492), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 539/1051 (51%), Positives = 657/1051 (62%), Gaps = 176/1051 (16%)
Query: 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKG-SRAHAIVEFTTVEAADF 59
M K I ++GF L S + VK FLE++TG GTV +EV Q+KG SRA A V+F +AD
Sbjct: 1 MGKTIQVFGFPYLLSAEVVKSFLEKYTGYGTVCALEVKQSKGGSRAFAKVQFADNISADK 60
Query: 60 IKCLARERLSYGNSFLKASSAKRRTPHFAKRTPHYKLGGDLKLNFGCQISKDKFSVFWSQ 119
I LA RL +G+S+LKA K T R ++ G + LNFGCQIS DKF+V S
Sbjct: 61 IITLANNRLYFGSSYLKAWEMK--TDIVQLRAYVDQMDG-ITLNFGCQISDDKFAVLGST 117
Query: 120 ENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSGHSVS------------ 167
E VS++ L+KF FFLS S DYKL+LS E+IWQ+ LHRP G +
Sbjct: 118 E-VSIQFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRI 176
Query: 168 ------------------------------IGQSSAICLELPSRALIPKALKDFFHYKES 197
IG SS++CL+ +P + FFHY E
Sbjct: 177 YKRLENSCYSFFKETPDDQWVRTTDFPPSWIGLSSSLCLQFRRGVRLPNFEESFFHYAER 236
Query: 198 LVQFTLLPGFVFSCN-------------------------SDLNQDG------------- 219
TL GF F + S L Q G
Sbjct: 237 ENNITLQTGFTFFVSQKSALVPNVQPPEGISIPYKILFKISSLVQHGCIPGPALNVYFFR 296
Query: 220 ------------KHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIY 267
+HALE L++++ECCYDPV WL EQY ++ Q P SP++ LD GL+Y
Sbjct: 297 LVDPRRRNVACIEHALEKLYYIKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVY 356
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
V ++LVTP KVYFCGPE+++SNRV+R+Y ++IDNFLR+SFVDE+ KLYST L P+ S+
Sbjct: 357 VRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTG 416
Query: 328 NGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERM 387
+G R T IYER+LSTLR G VIGDKKFE LAFS+SQ R+N++WMFASRP LTA DIR M
Sbjct: 417 SGVR-TNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRAWM 475
Query: 388 GDFREIKNVTKYAARLGQSFASSREALHV--------------------DSNIGKISAEL 427
GDF +IKNV KYAARLGQSF SSRE L V IGKIS +
Sbjct: 476 GDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKVHGTSYVFSDGIGKISGDF 535
Query: 428 AETVAKKCGYAIYTPSAFQIRYGGYK------------VTLRNNMFKYKSESTSLDILAN 475
A VA KCG YTPSAFQIRYGGYK ++LR +M KY+S++ LD+L
Sbjct: 536 AHRVASKCGLQ-YTPSAFQIRYGGYKGVVGVDPDSSMKLSLRKSMSKYESDNIKLDVLGW 594
Query: 476 SKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENT 526
SKYQ R+ + L D V E+KQ+E V +LDAIL DS K QEALELMS ENT
Sbjct: 595 SKYQPCYLNRQLITLLSTLGVKDEVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENT 654
Query: 527 NVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEY 586
N+LK +LNCGYKPDAEPFLSMM QTF AS LL+LRTR+RIFI NG+ MMGCLDE TLEY
Sbjct: 655 NILKAMLNCGYKPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLEY 714
Query: 587 GQ---------------------------------GLMVVAKKPCLHPGDMRVLRAVDVP 613
GQ G +VVAK PCLHPGD+RVL+AV+V
Sbjct: 715 GQVFVQFTGAGHGEFSDDLHPFNNSRSTNSNFILKGNVVVAKNPCLHPGDIRVLKAVNVR 774
Query: 614 ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKIL 673
ALHHMVDCV+FP KG+RPH NECSGSD DG+IYFVCWD D IPP Q QP Y PAP L
Sbjct: 775 ALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQL 834
Query: 674 ARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSK 733
DVTIE+VEEYF +YIVNDSLGII NAHVV+A EPD AMS+ C L +L SI DF K
Sbjct: 835 DHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPK 894
Query: 734 TGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAM 793
TGV A IPS+LR K YPDFM+K DKT Y S+ ++G L+R+V AP ++I +F ++ A
Sbjct: 895 TGVPAEIPSQLRPKEYPDFMDKPDKTSYISERVIGKLFRKVKDKAPQASSIATFTRDVAR 954
Query: 794 QFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFD 853
+ YD DMEV+GF++ + F Y+TEYDNKLGNLMDYYGIKTEAE+LS IM+ +K+FD
Sbjct: 955 RSYDADMEVDGFEDYIDE--AFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFD 1012
Query: 854 KKRDLEAISFSVRSLRKEARAWFNKKKNDSD 884
+++D EAIS +VR+LRKEARAWF K++ND D
Sbjct: 1013 RRKDAEAISVAVRALRKEARAWF-KRRNDID 1042
>gi|142942402|gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 1115
Score = 960 bits (2481), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/1052 (51%), Positives = 653/1052 (62%), Gaps = 177/1052 (16%)
Query: 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKG-SRAHAIVEFTTVEAADF 59
M K I ++GF +L S + VK FLE+HTG GT+ +EV Q+KG SRA A V+F +AD
Sbjct: 1 MGKTIQVFGFPNLLSAEVVKLFLEKHTGYGTICALEVKQSKGGSRAFAKVQFVDNISADK 60
Query: 60 IKCLARERLSYGNSFLKASSAKRRTPHFAKRTPHYKLGGDLKLNFGCQISKDKFSVFWSQ 119
I LA +RL +G+S+LKA K H + LNFGCQIS+DKF+V S
Sbjct: 61 IINLASKRLYFGSSYLKAWEMKTDIVQLRAYVDHMD---GITLNFGCQISEDKFAVLGST 117
Query: 120 ENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSGHSVS------------ 167
E VS+K L+KF FFLS S DYKL+LS E+IWQ+ LHRP G +
Sbjct: 118 E-VSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRI 176
Query: 168 ------------------------------IGQSSAICLELPSRALIPKALKDFFHYKES 197
IG SS++CL+ +P + FFHY E
Sbjct: 177 YKRLENSCYSFFKETPDDQWVRTTDFTPSWIGLSSSLCLQFRRGVHLPNFQESFFHYAER 236
Query: 198 LVQFTLLPGFVFSCN-------------------------SDLNQDG------------- 219
TL GF F + S L Q G
Sbjct: 237 ENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFR 296
Query: 220 ------------KHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIY 267
+ ALE L++L+ECCYDPV WL EQY ++ Q P SP++ LD GL+Y
Sbjct: 297 LVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVY 356
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
V ++LVTP KVYFCGPE+++SNRV+R+Y ++IDNFLR+SFVDE+ KLYST L P+ S+
Sbjct: 357 VRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTG 416
Query: 328 NGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERM 387
NG RT IYER+LSTLR G VIGDKKFE LAFS+SQ R+N++WMFASR LT DIR M
Sbjct: 417 NG-IRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRRGLTTNDIRSWM 475
Query: 388 GDFREIKNVTKYAARLGQSFASSREALHV--------------------DSNIGKISAEL 427
GDF +IKNV KYAARLGQSF SSRE L V IGKISA+
Sbjct: 476 GDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKVHGTSYVFSDGIGKISADF 535
Query: 428 AETVAKKCGYAIYTPSAFQIRYGGYK------------VTLRNNMFKYKSESTSLDILAN 475
A VA KCG YTPSAFQIRYGGYK ++LR +M KY+S++ LD+L
Sbjct: 536 ARRVASKCGLQ-YTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGW 594
Query: 476 SKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENT 526
SKYQ R+ V L D+V E+KQ+E V +LDAIL DS K QEALELMS ENT
Sbjct: 595 SKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVHQLDAILHDSLKAQEALELMSPGENT 654
Query: 527 NVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEY 586
N+LK +LNCGY PDAEPFLSMM QTF AS LL+LRTR+RIFI NG+AMMGCLDE TLEY
Sbjct: 655 NILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEY 714
Query: 587 GQ---------------------------------GLMVVAKKPCLHPGDMRVLRAVDVP 613
GQ G +VVAK PCLHPGD+RVLRAVDVP
Sbjct: 715 GQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVP 774
Query: 614 ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKIL 673
ALHHMVDCV+FP KG+RPH NECSGSD DG+IYFVCWD D IPP Q Q Y PAP L
Sbjct: 775 ALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQL 834
Query: 674 ARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSK 733
+VTIE+VEEYF +YIVNDSLGII NAHVV+A EPD AMS+ C L +L SI DF K
Sbjct: 835 DHNVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPK 894
Query: 734 TGVAATIPSRLRVKIYPDFMEK-QDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGA 792
TGV A IPS+LR K YPDFM+K DKT Y S+ ++G L+R+V AP ++I F ++ A
Sbjct: 895 TGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKDKAPQASSIAIFTRDVA 954
Query: 793 MQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSF 852
+ YD D+EV+GF++ + F Y+TEYDNKLGNLMDYYGIKTEAE+LS IM+ +K+F
Sbjct: 955 RRSYDADLEVDGFEDYIDE--AFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTF 1012
Query: 853 DKKRDLEAISFSVRSLRKEARAWFNKKKNDSD 884
D+++D EAIS +VR+LRKEAR WF K++ND D
Sbjct: 1013 DRRKDAEAISVAVRALRKEARTWF-KRRNDID 1043
>gi|142942515|gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 1065
Score = 957 bits (2474), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/1052 (50%), Positives = 651/1052 (61%), Gaps = 178/1052 (16%)
Query: 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKG-SRAHAIVEFTTVEAADF 59
M K I +YGF L + VK FLE+HTG GTV ++V Q+KG SRA A V+F +AD
Sbjct: 1 MGKTIQVYGFPDLLPAEVVKSFLEKHTGYGTVCALDVKQSKGGSRAFAKVQFVDNISADK 60
Query: 60 IKCLARERLSYGNSFLKASSAKRRTPHFAKRTPHYKLGGDLKLNFGCQISKDKFSVFWSQ 119
I LA +RL +G+S+LKA K A + + LNFGCQIS DKF+V S
Sbjct: 61 IINLASKRLYFGSSYLKAWEMKTDIVQVA----YVDHMDGITLNFGCQISDDKFAVLGST 116
Query: 120 ENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSGHSVS------------ 167
E VS+K L+K FFLS S DYKL+LS E+IWQ+ LHRP G +
Sbjct: 117 E-VSIKFGIGLKKIYFFLSRGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRI 175
Query: 168 ------------------------------IGQSSAICLELPSRALIPKALKDFFHYKES 197
IG SS++CL+ +P + FFHY E
Sbjct: 176 YKRLENSCYSFFKETPDDQWVRTTDFAPSWIGLSSSLCLQFRRGVHLPNFQESFFHYAER 235
Query: 198 LVQFTLLPGFVFSCN-------------------------SDLNQDG------------- 219
TL GF F + S L Q G
Sbjct: 236 ENNITLQTGFTFFISQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPSLNVYFFR 295
Query: 220 ------------KHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIY 267
+ ALE L++L+ECCYDPV WL EQY ++ Q P SP++ LD GL+Y
Sbjct: 296 LVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVY 355
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
V ++LVTP KVYFCGPE+++SNRV+R+Y ++IDNFLR+SFVDE+ KLYST L P+ S+
Sbjct: 356 VRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTG 415
Query: 328 NGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERM 387
NG RT IYER+LST++ G VIGDKKFE LAFS+SQ R+N++WMFASRP LTA DIR M
Sbjct: 416 NG-IRTNIYERILSTMQKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWM 474
Query: 388 GDFREIKNVTKYAARLGQSFASSREALHV--------------------DSNIGKISAEL 427
GDF +IKNV KYAARLGQSF SS+E L V IGKISA+
Sbjct: 475 GDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEVIPDVKVHGTSYVFSDGIGKISADF 534
Query: 428 AETVAKKCGYAIYTPSAFQIRYGGYK------------VTLRNNMFKYKSESTSLDILAN 475
A VA KCG YTPSAFQIRYGGYK ++LR +M KY+S++ LD+L
Sbjct: 535 ARRVASKCGLQ-YTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGW 593
Query: 476 SKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENT 526
SKYQ R+ + L D++ E+KQ+E V +LDAIL DS K QEALELMS ENT
Sbjct: 594 SKYQPCYLNRQLITLLSTLGVKDDILEQKQKEAVDQLDAILHDSLKAQEALELMSPGENT 653
Query: 527 NVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEY 586
N+LK +LNCGY PDAEPFLSMM QTF AS LL+LRT++RIFI NG+AMMGCLDE TLEY
Sbjct: 654 NILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEY 713
Query: 587 GQ---------------------------------GLMVVAKKPCLHPGDMRVLRAVDVP 613
GQ G +VVAK PCLHPGD+RVLRAVDVP
Sbjct: 714 GQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVP 773
Query: 614 ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKIL 673
ALHHMVDCV+FP KG+RPH NECSGSD DG+IYFVCWD D IPP Q QP Y PAP L
Sbjct: 774 ALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQL 833
Query: 674 ARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSK 733
DVTIE+VEEYF +YIVNDSLGII NAHVV+A EPD AMS+ C L +L SI DF K
Sbjct: 834 DHDVTIEEVEEYFTNYIVNDSLGIISNAHVVFADREPDMAMSDPCKKLAELCSIAVDFPK 893
Query: 734 TGVAATIPSRLRVKIYPDFMEK-QDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGA 792
TGV A IPS+ R K YPDFM+K DKT Y S+ ++G LYR+V AP ++ F ++ A
Sbjct: 894 TGVPAEIPSQWRPKEYPDFMDKPPDKTTYISERVIGKLYRKVKDKAPQASSTAIFTRDVA 953
Query: 793 MQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSF 852
+ YD D+EV+GF++ + F Y+TEYDNKLGNLMDYYGIKTEAE+LS IM+ +K+F
Sbjct: 954 RRSYDADLEVDGFEDYIDE--AFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTF 1011
Query: 853 DKKRDLEAISFSVRSLRKEARAWFNKKKNDSD 884
D+++D EAIS +VR+LRKEAR WF K++ND D
Sbjct: 1012 DRRKDAEAISIAVRALRKEARTWF-KRRNDID 1042
>gi|225424395|ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
Length = 1109
Score = 955 bits (2468), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 529/1065 (49%), Positives = 664/1065 (62%), Gaps = 190/1065 (17%)
Query: 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKG--SRAHAIVEFTTVEAAD 58
M K I +YG S S +KEFLE++TGEGT+ +E+ Q K S HA V+FT++ A+
Sbjct: 1 MGKTIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIKQPKSGVSMTHAKVQFTSLRLAE 60
Query: 59 FIKCLARERLSYGNSFLKASS------AKRRT-PHFAKRTPHYKLGGDLKLNFGCQISKD 111
I LA++ L YG ++LKA K RT H R + L+FG Q+S +
Sbjct: 61 LIISLAKQ-LWYGGNYLKAREMDLDIIPKPRTFLHSMDR---------ITLHFGYQMSNE 110
Query: 112 KFSVFWSQENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSGH------- 164
+F V W NVSVK LRKF FFLS+ S +YKLELS E+IWQI+L P G
Sbjct: 111 RFCVLWKAINVSVKFGFGLRKFYFFLSHGSEEYKLELSCENIWQIQLREPRGQNTKFLLI 170
Query: 165 -----------------------------------SVSIGQSSAICLELPSRALIPKALK 189
S SIGQSSA+CLELP + +P +
Sbjct: 171 QLLDAPQIYEKDVSALSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLPNFCE 230
Query: 190 DFFHYKESLVQFTLLPGFVFSCN-----------------------SDLNQDG------- 219
+F YKE+ +F L G FS N + L Q+G
Sbjct: 231 NFARYKENDRKFILESGASFSGNLHLVPIVGPPQGSNLPFKILFKINTLVQNGCLSGPTL 290
Query: 220 ------------------KHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVAL 261
+HALE L++L ECCY+PV WL EQYR ++S Q SPA++L
Sbjct: 291 DTNFFRWVDPQRINISFIEHALEKLYYLEECCYEPVRWLHEQYRTYISK-QVAGSPAISL 349
Query: 262 DGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLS 321
D GL+YV ++ +TP KVYFCGPE+++SNRV+R+YP++IDNFLR+SF+DE+ K++STV+S
Sbjct: 350 DTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENSEKIHSTVIS 409
Query: 322 PQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAA 381
P++S N RRT +Y R+LS L+NGIVIGDKKF+ LA S+SQ R+N+ WMFASRP LTAA
Sbjct: 410 PRMS--NEGRRTGVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFASRPGLTAA 467
Query: 382 DIRERMGDFREIKNVTKYAARLGQSFASSREALHV----------------------DSN 419
DIR RMGDF +I+NV KYAARLGQSF+SS+E L V
Sbjct: 468 DIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIETHRDGTTYVFSDG 527
Query: 420 IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK------------VTLRNNMFKYKSES 467
IGKISAELA VA KCG TPSAFQIRYGGYK ++LR +MFKY+SE+
Sbjct: 528 IGKISAELAHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESEN 587
Query: 468 TSLDILANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEALE 518
T+LD+L+ SKY+ R+ + L D+VFE+KQRE V +LD IL D + QEALE
Sbjct: 588 TNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDPLRAQEALE 647
Query: 519 LMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCL 578
LMS ENTN+LKE+L CGYKPDAEPFLSMM QTF A+ LLELRT+ RIF+ NG++MMGCL
Sbjct: 648 LMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCL 707
Query: 579 DEKGTLEYG---------------------------------QGLMVVAKKPCLHPGDMR 605
DE TLEYG +G +VVAK PCLHPGD+R
Sbjct: 708 DETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHDNFILEGKVVVAKNPCLHPGDVR 767
Query: 606 VLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAY 665
+L AVDVPALHHMVDCV+FP KG RPH +ECSGSD DG+IYFVCWDHD IPP Q P Y
Sbjct: 768 ILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDLIPPRQINPMDY 827
Query: 666 TPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLS 725
TPAP K+L DV IE+VEEYF +YI ND LGII NAH V+A E DKA+ C +L KL
Sbjct: 828 TPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKEYDKALCPPCKELAKLF 887
Query: 726 SIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIK 785
SI +F KTGV A IP L VK YPDFMEK +K YESQ ++G L+REV +AP ++
Sbjct: 888 SIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDVAPHNYDVR 947
Query: 786 SFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCI 845
SF ++ AMQ YD DMEV+GF++ D F Y+++YD KLG+LMD GI+TE+E+LS I
Sbjct: 948 SFTRDVAMQSYDADMEVDGFEDYVR--DAFYYKSQYDFKLGSLMDCCGIRTESEILSGSI 1005
Query: 846 MEMAKSFDKKRDLEAISFSVRSLRKEARAWFNKKKNDSDSSHKDV 890
M+M+KSFDK++D EAI+ +VRSLRKEAR WFNK + + + DV
Sbjct: 1006 MKMSKSFDKRKDAEAIALAVRSLRKEARTWFNKMGSGTYAGADDV 1050
>gi|113205257|gb|AAT38687.2| RNA-directed RNA polymerase, putative [Solanum demissum]
Length = 1139
Score = 915 bits (2365), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 524/1050 (49%), Positives = 635/1050 (60%), Gaps = 175/1050 (16%)
Query: 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK-GSRAHAIVEFTTVEAADF 59
M K I +YGF L S + VK FLE+HTG GTV +EV Q+K GSRA A V+F +AD
Sbjct: 27 MGKTIQVYGFPDLLSAEVVKSFLEKHTGYGTVCALEVKQSKRGSRAFAKVQFVDNISADK 86
Query: 60 IKCLARERLSYGNSFLKASSAKRRTPHFAKRTPHYKLGGDLKLNFGCQISKDKFSVFWSQ 119
I LA +RL +G+S+LKA K H + G + LNFGCQIS DKF+V S
Sbjct: 87 IINLASKRLYFGSSYLKAWEMKADIVQLRAYVDH--MDG-ITLNFGCQISDDKFAVLGST 143
Query: 120 ENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSGHSVS--------IGQS 171
E V + +F + + L N S + P V IG S
Sbjct: 144 EVVLHRPYGQNAQFLLIQLFGAPRIYKRLEN-SCYSFFKETPDDQWVRTTDFAPSWIGLS 202
Query: 172 SAICLELPSRALIPKALKDFFHYKESLVQFTLLPGFVFSCN------------------- 212
S++CL+ +P + FFHY E TL GF F +
Sbjct: 203 SSLCLQFRRGVHLPNFQESFFHYTERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPY 262
Query: 213 ------SDLNQDG-------------------------KHALEMLFHLRECCYDPVSWLR 241
S L Q G + ALE L++L+ECCYDPV WL
Sbjct: 263 KILFKISSLVQHGCIPGPALDVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLT 322
Query: 242 EQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDN 301
EQY ++ Q P SP++ LD GL+YV ++LVTP KVYFCGPE+++SNRV+R+Y ++IDN
Sbjct: 323 EQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDN 382
Query: 302 FLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSN 361
FLR+SFVDE+ KLYST L P+ S+ NG RT IYER+LSTLR G VIGDKKFE LAFS+
Sbjct: 383 FLRVSFVDEEWEKLYSTDLLPKASTGNG-IRTNIYERILSTLRKGFVIGDKKFEFLAFSS 441
Query: 362 SQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHV----- 416
SQ R+N++WMFASRP LTA DIR MGDF +IKNV KYAARLGQSF SS+E L V
Sbjct: 442 SQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEI 501
Query: 417 ---------------DSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGY--------- 452
IGKISA+ A VA KCG YTPSAFQIRYGGY
Sbjct: 502 EVIPDVKVHGTSYVFSDGIGKISADFARRVASKCGLQ-YTPSAFQIRYGGYKGVVAVDPY 560
Query: 453 ---KVTLRNNMFKYKSESTSLDILANSKYQ-----REGVARLRL----DNVFERKQREVV 500
K++LR +M KY+S++ LD+L SKYQ R+ V L D+V E+KQ+E V
Sbjct: 561 SSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAV 620
Query: 501 ARLDAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLEL 560
+LDAIL DS K QEALELMS ENT +LK +LNCGY PDAEPFLSMM QTF AS LL+L
Sbjct: 621 DQLDAILHDSLKAQEALELMSPGENTTILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDL 680
Query: 561 RTRARIFIQNGQAMMGCLDEKGTLEYGQ-------------------------------- 588
RTR+RIFI NG+AMMGCLDE TLEYGQ
Sbjct: 681 RTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFIL 740
Query: 589 -GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKG------------------- 628
G +VVAK PCLHPGD+RVLRAVDVPALHHMVDCV+FP KG
Sbjct: 741 KGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRLGMYFNCLPTSEVEVKS 800
Query: 629 --------------ERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILA 674
+RPH NECSGSD DG+IYFVCWD D IPP Q QP Y PAP L
Sbjct: 801 AYTLPSSDPTLCFDDRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQLD 860
Query: 675 RDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKT 734
DVTIE+VEEYF +YIVNDSLGII NAHVV+A EPD AMS+ C L +L SI DF KT
Sbjct: 861 HDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKT 920
Query: 735 GVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQ 794
GV A IPS+LR K YPDFM+K DKT Y S+ ++G L+R+V AP ++I F ++ A +
Sbjct: 921 GVPAEIPSQLRPKEYPDFMDKPDKTTYISERVIGKLFRKVKDKAPQASSIAIFTRDVARR 980
Query: 795 FYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDK 854
YD D+EV+GF++ + F Y+TEYDNKLGNLMDYYGIKTEAE+LS IM+ +K+FD+
Sbjct: 981 SYDVDLEVDGFEDYIDE--AFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDR 1038
Query: 855 KRDLEAISFSVRSLRKEARAWFNKKKNDSD 884
++D EAIS +VR+LRKEAR WF K++ND D
Sbjct: 1039 RKDAEAISIAVRALRKEARTWF-KRRNDID 1067
>gi|146762448|gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 914 bits (2363), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/1049 (48%), Positives = 643/1049 (61%), Gaps = 170/1049 (16%)
Query: 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGS-RAHAIVEFTTVEAADF 59
M K I +YGF S S VK FLE +TG TV +++ Q+K S RA AIV+FT A
Sbjct: 1 MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSGRAFAIVQFTRSSDAGL 60
Query: 60 IKCLARERLSYGNSFLKASSAKRRTPHFAKRTPHYKLGGDLKLNFGCQISKDKFSVFWSQ 119
I LA +RL YG S+LKA + T K + +NFGCQ+S++KF V W
Sbjct: 61 IIRLANQRLYYGRSYLKAREME--TDIVPKPRVFLHTMERVTVNFGCQVSEEKFYVLWKA 118
Query: 120 ENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRP----SGH----------- 164
+NV++ + +RK F LSY S YKLEL E+IWQIEL P S H
Sbjct: 119 DNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPRI 178
Query: 165 ------------------------------------SVSIGQSSAICLELPSRALIPKAL 188
S IGQSS + LELP +P
Sbjct: 179 YEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELPHNLQLPNFR 238
Query: 189 KDFFHYKESLVQFTLLPGFVFSCNSDLN-----------------------QDG------ 219
++F +YKE+ + L G +SCN L Q+G
Sbjct: 239 ENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGPA 298
Query: 220 -------------------KHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVA 260
HALE L++LRECCY+P WL E+Y+ S ++ SP ++
Sbjct: 299 LDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTIS 358
Query: 261 LDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVL 320
LD GL+YV ++ +TPS+VYFCGPEI++SNRV+R + ++IDNFLR+SFVDE+L K++ST +
Sbjct: 359 LDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTNV 418
Query: 321 SPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTA 380
+ RRT IY+R+LSTLRNGIVIG+K+FE LAFS+SQ REN+ WMFASR LTA
Sbjct: 419 QAR------GRRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLTA 472
Query: 381 ADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN--------------------- 419
ADIR MG+F +I+NV KYAARLGQSF+SS E L V +
Sbjct: 473 ADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFSD 532
Query: 420 -IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK------------VTLRNNMFKYKSE 466
IGKISAE A+ VA KC TPSAFQIR GG+K ++LR +M KY+SE
Sbjct: 533 GIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYESE 592
Query: 467 STSLDILANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEAL 517
+T LD+LA SKYQ R+ + L D FE+KQREVV +L+A+LTD + QEAL
Sbjct: 593 NTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTDPLEAQEAL 652
Query: 518 ELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGC 577
ELMS ENTN+LKE+L CGYKPDAEPFLSMM +TF AS LLELRT+ARIF+Q G++MMGC
Sbjct: 653 ELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMGC 712
Query: 578 LDEKGTLEYGQ-----------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVD 620
LDE TL YGQ G ++VAK PCLHPGD+RVLRAV+VP LHHMVD
Sbjct: 713 LDETRTLNYGQVFVQFSGSRSERRFIVQGKVIVAKNPCLHPGDVRVLRAVNVPDLHHMVD 772
Query: 621 CVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIE 680
CV+FP KG RPH NECSGSD DG++YFVCWD + IP Q P Y+PA L +VTIE
Sbjct: 773 CVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPMDYSPASTTKLDHEVTIE 832
Query: 681 DVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATI 740
++EEYF +YIVNDSLGII NAH +A EPDKAMS C +L KL SI DF KTGV A I
Sbjct: 833 EIEEYFTNYIVNDSLGIISNAHTAFADREPDKAMSRPCLELAKLFSIAVDFPKTGVPAEI 892
Query: 741 PSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDM 800
P LRVK YPDFMEK DK Y+S +++G L+REV +AP+ +IK +E +FYD DM
Sbjct: 893 PQELRVKEYPDFMEKPDKPSYQSHNVIGKLFREVKNLAPNECSIKFLTREKMQRFYDPDM 952
Query: 801 EVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRDLEA 860
EV GF++ D F ++++YD KLGNLMDYYG+KTEAE+L IM+M++SF KKRD EA
Sbjct: 953 EVEGFEDYID--DAFFHKSKYDYKLGNLMDYYGVKTEAEILGGGIMKMSRSFTKKRDAEA 1010
Query: 861 ISFSVRSLRKEARAWFNKKKNDSDSSHKD 889
IS +VRSLRKEAR+WFN+K ++ D D
Sbjct: 1011 ISMAVRSLRKEARSWFNEKGSELDEEIDD 1039
>gi|90823307|gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 909 bits (2350), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/1049 (48%), Positives = 641/1049 (61%), Gaps = 170/1049 (16%)
Query: 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGS-RAHAIVEFTTVEAADF 59
M K I +YGF S S VK FLE +TG TV +++ Q+K S RA AIV+FT A
Sbjct: 1 MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSGRAFAIVQFTRSSDAGL 60
Query: 60 IKCLARERLSYGNSFLKASSAKRRTPHFAKRTPHYKLGGDLKLNFGCQISKDKFSVFWSQ 119
I LA +RL YG S+LKA + T K + +NF C +S++KF V W
Sbjct: 61 IIRLANQRLYYGRSYLKAREME--TDIVPKPRVFLHTMERVTVNFDCHVSEEKFYVLWKA 118
Query: 120 ENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRP----SGH----------- 164
+NV++ + +RK F LSY S YKLEL E+IWQIEL P S H
Sbjct: 119 DNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPRI 178
Query: 165 ------------------------------------SVSIGQSSAICLELPSRALIPKAL 188
S IGQSS +CLELP +P
Sbjct: 179 YEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLQLPNFR 238
Query: 189 KDFFHYKESLVQFTLLPGFVFSCNSDLN-----------------------QDG------ 219
++F +YKE+ + L G +SCN L Q+G
Sbjct: 239 ENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGPA 298
Query: 220 -------------------KHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVA 260
HALE L++LRECCY+P WL E+Y+ S ++ SP ++
Sbjct: 299 LDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTIS 358
Query: 261 LDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVL 320
LD GL+YV ++ +TPS+VYFCGPEI++SNRV+R + ++IDNFLR+SFVDE+L K++ST +
Sbjct: 359 LDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTNV 418
Query: 321 SPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTA 380
+ RRT IY+R+LSTLRNGIVIG+K+FE LAFS+SQ REN+ WMFASR LTA
Sbjct: 419 QAR------GRRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLTA 472
Query: 381 ADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN--------------------- 419
ADIR MG+F +I+NV KYAARLGQSF+SS E L V +
Sbjct: 473 ADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFPD 532
Query: 420 -IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK------------VTLRNNMFKYKSE 466
IGKISAE A+ VA KC TPSAFQIR GG+K ++LR +M KY+SE
Sbjct: 533 GIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYESE 592
Query: 467 STSLDILANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEAL 517
+T LD+LA SKYQ R+ + L D FE+KQREVV +L+A+LTD + QEAL
Sbjct: 593 NTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNALLTDPLEAQEAL 652
Query: 518 ELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGC 577
ELMS ENTN+LKE+L CGYKPDAEPFLSMM +TF AS LLELRT+ARIF+Q G++MMGC
Sbjct: 653 ELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMGC 712
Query: 578 LDEKGTLEYGQ-----------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVD 620
LDE TL YGQ G ++VAK PCLHPGD+RVLRAV+VP LHHMVD
Sbjct: 713 LDETRTLNYGQVFVQFSGSRSERRFIVQGKVIVAKNPCLHPGDVRVLRAVNVPDLHHMVD 772
Query: 621 CVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIE 680
CV+FP KG RPH NECSGSD DG++YFVCWD + IP Q P Y+PA L +VTIE
Sbjct: 773 CVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPMDYSPASTTKLDHEVTIE 832
Query: 681 DVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATI 740
++EEYF +YIVNDSLGII NAH +A EP KAMS C +L KL SI DF KTGV A I
Sbjct: 833 EIEEYFTNYIVNDSLGIISNAHTAFADREPGKAMSRPCLELAKLFSIAVDFPKTGVPAEI 892
Query: 741 PSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDM 800
P LRVK +PDFMEK DK Y+S +++G L+REV +AP+ +IK +E +FYD DM
Sbjct: 893 PQELRVKEFPDFMEKPDKPSYQSYNVIGKLFREVKNLAPNECSIKLLTREKMKRFYDPDM 952
Query: 801 EVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRDLEA 860
EV GF V D F Y+++YD KLGNLMDYYG+KTEAE+LS IM+M++SF KKRD E+
Sbjct: 953 EVEGF--VDYIDDAFFYKSKYDYKLGNLMDYYGVKTEAEILSGGIMKMSRSFTKKRDAES 1010
Query: 861 ISFSVRSLRKEARAWFNKKKNDSDSSHKD 889
IS +VRSLRKEAR+WFN+K ++ D D
Sbjct: 1011 ISMAVRSLRKEARSWFNEKGSELDEEIDD 1039
>gi|15223906|ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
gi|75335341|sp|Q9LQV2.1|RDR1_ARATH RecName: Full=RNA-dependent RNA polymerase 1; Short=AtRDRP1; AltName:
Full=RNA-directed RNA polymerase 1
gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19 [Arabidopsis thaliana]
gi|110737376|dbj|BAF00633.1| putative RNA-directed RNA polymerase [Arabidopsis thaliana]
gi|332191105|gb|AEE29226.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
Length = 1107
Score = 902 bits (2330), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/1038 (48%), Positives = 630/1038 (60%), Gaps = 169/1038 (16%)
Query: 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAAD 58
M K I ++GF + S + VK+FLE TG GTV ++V Q K G R +AIV+FT+
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60
Query: 59 FIKCLARERLSYGNSFLKASSAKRRTPHFAKRTPHYKLGGDLKLNFGCQISKDKFSVFWS 118
I A ERL YG S+LKA ++ + + H G LK+ FGCQ+S KF WS
Sbjct: 61 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISG--LKMFFGCQVSTKKFLTLWS 118
Query: 119 QENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSGHSVS----------- 167
++V V +RK F S+ DY+LELS E+IWQI+LH P G S
Sbjct: 119 AQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPK 178
Query: 168 --------------------------------------IGQSSAICLELPSRALIPKALK 189
IGQS+A CLELP +P +
Sbjct: 179 IFEKEDQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRE 238
Query: 190 DFFHYKESLVQFTLL--------------------PGF------VFSCNSD--------- 214
+F +Y E L+ PGF +F N+
Sbjct: 239 NFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGP 298
Query: 215 ---------LNQDG------KHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAV 259
LNQ H LE LFHL ECCY+P WLR++Y+K +S G+ P SP +
Sbjct: 299 ALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTI 358
Query: 260 ALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTV 319
+LD GL+Y+ ++ VTP++VYF GPE+++SNRV+R Y I+NFLR+SFVDEDL K+ S
Sbjct: 359 SLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMD 418
Query: 320 LSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELT 379
LSP+ S+ +RRT++Y+R+ S LR+GIVIGDKKFE LAFS+SQ REN+ WMFA +T
Sbjct: 419 LSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDRIT 475
Query: 380 AADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN-------------------- 419
AA IR MGDF I+NV KYAARLGQSF+SSRE L+V S+
Sbjct: 476 AAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVFS 535
Query: 420 --IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK------------VTLRNNMFKYKS 465
IGKISAE A VA+KCG ++PSAFQIRYGGYK ++LR +M K++S
Sbjct: 536 DGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFES 595
Query: 466 ESTSLDILANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEA 516
E+T LD+LA SKYQ R+ + L D+VFE+KQREVV RLDAILT + EA
Sbjct: 596 ENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHEA 655
Query: 517 LELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMG 576
L LM+ ENTN+LK L+ CGYKPDAEPFLSMM Q F AS LLELRT+ RIFI G++MMG
Sbjct: 656 LGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMG 715
Query: 577 CLDEKGTLEYGQ------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHM 618
CLDE TLEYGQ G +VVAK PCLHPGD+RVL+AV+VPAL+HM
Sbjct: 716 CLDETRTLEYGQVVVQYSDPMRPGRRFIITGPVVVAKNPCLHPGDVRVLQAVNVPALNHM 775
Query: 619 VDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVT 678
VDCV+FP KG RPH NECSGSD DG+IYFVCWD + +PP +P YTP P +IL DVT
Sbjct: 776 VDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDYTPEPTQILDHDVT 835
Query: 679 IEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAA 738
IE+VEEYFA+YIVNDSLGII NAH +A EP KA S+ C +L K S DF KTGVAA
Sbjct: 836 IEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFSTAVDFPKTGVAA 895
Query: 739 TIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDT 798
IP L VK YPDFMEK DK YES++++G L+REV AP +IKSF + A + YD
Sbjct: 896 VIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVASKSYDK 955
Query: 799 DMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRDL 858
DMEV+GF+E + F + YD KLGNLMDYYGIKTEAE+LS IM M+KSF K+RD
Sbjct: 956 DMEVDGFEEYVDE--AFYQKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRDA 1013
Query: 859 EAISFSVRSLRKEARAWF 876
E+I +VR+LRKE + F
Sbjct: 1014 ESIGRAVRALRKETLSLF 1031
>gi|297805194|ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
gi|297316317|gb|EFH46740.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
Length = 1097
Score = 901 bits (2328), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 507/1039 (48%), Positives = 634/1039 (61%), Gaps = 160/1039 (15%)
Query: 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAAD 58
M K I ++GF + S + VK+FLE TG GTV ++V Q K G R AIV+FT A
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVFAIVQFTNERYAR 60
Query: 59 FIKCLARER-LSYGNSFLKASSAKRRTPHFAKRTPHYKLGGDLKLNFGCQISKDKFSVFW 117
I A ER L YG S+L A ++ + + H G LK+ FGCQ+S KF W
Sbjct: 61 QIITGAAERSLYYGRSYLNAFEVEQDIVPKPRASLHNISG--LKMYFGCQVSTQKFLTLW 118
Query: 118 SQENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSGHSVS---------- 167
S ++V V +RK F S+ DY+LELS E+IWQI+LH P G S
Sbjct: 119 SAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQKKKPI 178
Query: 168 -----------------------------IGQSSAICLELPSRALIPKALKDFFHYKE-- 196
IGQS+A CLELP +P ++F +Y E
Sbjct: 179 NLLFGMMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHR 238
Query: 197 ----------------------------------------SLVQFTLLPGFVFSCNSDLN 216
+LVQ LPG +
Sbjct: 239 ASPFLIESGSSYSSNANKLVPVVDPPPGFDLPFEILFKLNTLVQNACLPGPALDLDVYQL 298
Query: 217 QDGK--------HALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYV 268
+ K H LE LF+L E CY+P WLR+QY++ S G+ P SP ++LD GL+Y+
Sbjct: 299 LNPKKIDRALIDHCLEKLFYLGESCYEPARWLRKQYKELSSKGKLPLSPTISLDDGLVYM 358
Query: 269 NKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTN 328
++ VTP++VYF GPE+++SNRV+R Y I+NFLR+SFVDEDL K+ S LSP+ S+
Sbjct: 359 YRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMDLSPRSST-- 416
Query: 329 GERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMG 388
+RRT++Y+R+ S LR+GIVIGDKKFE LAFS+SQ REN+ WMFA LT+A IR MG
Sbjct: 417 -QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDGLTSAHIRAWMG 475
Query: 389 DFREIKNVTKYAARLGQSFASSREALHVDSN----------------------IGKISAE 426
DF I+NV KYAARLGQSF+SSRE L+V S+ IGKISAE
Sbjct: 476 DFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVFSDGIGKISAE 535
Query: 427 LAETVAKKCGYAIYTPSAFQIRYGGYK------------VTLRNNMFKYKSESTSLDILA 474
A VAKKCG ++PSAFQIRYGGYK ++LR +M K++SE+T LD+LA
Sbjct: 536 FARRVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFESENTKLDVLA 595
Query: 475 NSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEALELMSSAEN 525
SKYQ R+ + L D+VFE+KQREVV RLDAILTD + EAL LM+ EN
Sbjct: 596 WSKYQPCYMNRQLITLLSTLGIKDSVFEKKQREVVDRLDAILTDPLEAHEALGLMAPGEN 655
Query: 526 TNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLE 585
TN+LK L+ CGYKPDAEPFLSMM Q F AS LLELRT+ RIFI G++MMGCLDE TLE
Sbjct: 656 TNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCLDETRTLE 715
Query: 586 YGQ------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAK 627
YGQ G +VVAK PCLHPGD+RVL AV+VPAL+HMVDCV+FP K
Sbjct: 716 YGQVVVQYSDPMRPGRRFIITGPVVVAKNPCLHPGDVRVLEAVNVPALNHMVDCVVFPQK 775
Query: 628 GERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFA 687
G RPH NECSGSD DG+IYFVCWD + IPP +P YTP P +IL DVTIE+VEEYFA
Sbjct: 776 GLRPHPNECSGSDLDGDIYFVCWDQELIPPRTSEPMDYTPEPAQILDHDVTIEEVEEYFA 835
Query: 688 DYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVK 747
+YIVNDSLGII NAH +A EP KA S+ C +L + S+ DF KTGVAA IP L VK
Sbjct: 836 NYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELARKFSVAVDFPKTGVAAEIPQHLHVK 895
Query: 748 IYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKE 807
YPDFMEK DK YES++++G L+REV AP +IKSF + A++ YD DMEV+GF+E
Sbjct: 896 EYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVALKSYDKDMEVDGFEE 955
Query: 808 VAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRDLEAISFSVRS 867
+ F Y+ YD KLGNLMDYYGIKTEAE+LS IM M+KSF K+RD E+I +VR+
Sbjct: 956 YVDE--AFHYKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRDAESIGRAVRA 1013
Query: 868 LRKEARAWFNKKKNDSDSS 886
LRKE + FN + +++S+
Sbjct: 1014 LRKETLSLFNATEEENESA 1032
>gi|449457381|ref|XP_004146427.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|449491623|ref|XP_004158955.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|316989901|gb|ADU77016.1| RNA-dependent RNA polymerase 1b [Cucumis sativus]
Length = 1115
Score = 899 bits (2322), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/1067 (46%), Positives = 632/1067 (59%), Gaps = 183/1067 (17%)
Query: 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGS--RAHAIVEFTTVEAAD 58
M K I L+GF S ++VK F+E TG GT+ + ++KG R +AI++FT E A
Sbjct: 1 MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60
Query: 59 FIKCLARERLSYGNSFLKASSAKRRT-PHFAKRTPHYKLGGDLKLNFGCQISKDKFSVFW 117
I A ERL YG S+LKA K P ++K L+L+ GCQISK+ FSV W
Sbjct: 61 SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKA---LRLHLGCQISKESFSVLW 117
Query: 118 SQENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSGHSV----------- 166
++ NVSV +LRK FF+SY VDY L L E+IWQ+ELH+P G SV
Sbjct: 118 TESNVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAP 177
Query: 167 ---------------------------------------SIGQSSAICLELPSRALIPKA 187
SIGQS+A+CLE+P +P
Sbjct: 178 RIYERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPNF 237
Query: 188 LKDFFHYKESLVQFTLLPGFVFSCNSDLN-----------------------QDG----- 219
F ++KE +FTL+ G +S N +L Q G
Sbjct: 238 HDKFAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGP 297
Query: 220 --------------------KHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAV 259
HAL+ L HL+ECCY+P WL E+YRK+ P P +
Sbjct: 298 ALDISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPIL 357
Query: 260 ALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTV 319
L+ GL+YV+++ VTP KVYFCGPE+++SNRV+R YPD IDNFLR+SFVDE+LGK+YST
Sbjct: 358 TLNEGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTE 417
Query: 320 LSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELT 379
LSP+ SS+ + +T+I++R+LS LR+GI IGDKKFE LA+S+SQ REN WMFA + ELT
Sbjct: 418 LSPRASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELT 477
Query: 380 AADIRERMGDFREIKNVTKYAARLGQSFASSREALHV----------------------- 416
AA IR+ MGDF I+NV KYAARLGQSF SS E L V
Sbjct: 478 AAKIRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGSGVNYVF 537
Query: 417 DSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGY------------KVTLRNNMFKYK 464
IGKI+A A VAKKCG +TPSAFQIRY G+ K++LRN+M KY+
Sbjct: 538 SDGIGKIAASFARKVAKKCGIR-HTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYE 596
Query: 465 SESTSLDILANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQE 515
S T LD+L+ SKY R+ + L D+VFE KQ+E++ LD I +D K Q+
Sbjct: 597 STDTKLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQ 656
Query: 516 ALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMM 575
ALELMS ENT +LKE++ CGYKPD+EPFL MM TF S L+ELR ++RIFI NG+AMM
Sbjct: 657 ALELMSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMM 716
Query: 576 GCLDEKGTLEYGQ------------------------------GLMVVAKKPCLHPGDMR 605
GCLDE LEYG+ G +VVAK PCLHPGD+R
Sbjct: 717 GCLDETRNLEYGEVFVQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVR 776
Query: 606 VLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAY 665
VL AVDVP+LHHM+DCV+FP KG RPH NECSGSD DG+IYFVCWD D IPP Q +P Y
Sbjct: 777 VLTAVDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDY 836
Query: 666 TPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLS 725
TP P ++L DVT+E+V+EYFA+Y+VNDSLGII NAH +A EP KAMSN C L KL
Sbjct: 837 TPVPSQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLF 896
Query: 726 SIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIK 785
SI DF KTGV A IP+ LRVK YPDFM+K DK YES++++G L+R ++ I P+ I+
Sbjct: 897 SIAVDFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIR 956
Query: 786 SF--AKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSR 843
SF E A Q YD DMEV GF+E D ++ YD +LGNLM Y+ IKTEAE++S
Sbjct: 957 SFNYTPEMARQDYDPDMEVEGFEEYLD--DAIYHKNNYDMRLGNLMHYHKIKTEAELISG 1014
Query: 844 CIMEMAKSFDKKRDLEAISFSVRSLRKEARAWFNKKKNDSDSSHKDV 890
+ + SF K + E+I +V+SLRKEAR WFN+K + H +V
Sbjct: 1015 GSLTSSLSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNV 1061
>gi|24935275|gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
Length = 1107
Score = 898 bits (2321), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/1038 (48%), Positives = 629/1038 (60%), Gaps = 169/1038 (16%)
Query: 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAAD 58
M K I ++GF + S + VK+FLE TG GTV ++V Q K G R +AIV+FT+
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60
Query: 59 FIKCLARERLSYGNSFLKASSAKRRTPHFAKRTPHYKLGGDLKLNFGCQISKDKFSVFWS 118
I A ERL YG S+LKA ++ + + H G LK+ FGCQ+S KF WS
Sbjct: 61 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISG--LKMFFGCQVSTKKFLTLWS 118
Query: 119 QENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSGHSVS----------- 167
++V V +RK F S+ DY+LELS E+IWQI+LH P G S
Sbjct: 119 AQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPK 178
Query: 168 --------------------------------------IGQSSAICLELPSRALIPKALK 189
IGQS+A CLELP +P +
Sbjct: 179 IFEKEDQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRE 238
Query: 190 DFFHYKESLVQFTLL--------------------PGF------VFSCNSD--------- 214
+F +Y E L+ PGF +F N+
Sbjct: 239 NFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGP 298
Query: 215 ---------LNQDG------KHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAV 259
LNQ H LE LFHL ECCY+P WLR++Y+K +S G+ P SP +
Sbjct: 299 ALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTI 358
Query: 260 ALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTV 319
+LD GL+Y+ ++ VTP++VYF GPE+++SNRV+R Y I+NFLR+SFVDEDL K+ S
Sbjct: 359 SLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMD 418
Query: 320 LSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELT 379
LSP+ S+ +RRT++Y+R+ S LR+GIVIGDKKFE LAFS+SQ REN+ WMFA +T
Sbjct: 419 LSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDRIT 475
Query: 380 AADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN-------------------- 419
AA IR MGDF I+NV KYAARLGQSF+SSRE L+V S+
Sbjct: 476 AAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVFS 535
Query: 420 --IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK------------VTLRNNMFKYKS 465
IGKISAE A VA+KCG ++PSAFQIRYGGYK ++LR +M K++S
Sbjct: 536 DGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFES 595
Query: 466 ESTSLDILANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEA 516
E+T LD+LA SKYQ R+ + L D+VFE+KQREVV RLDAILT + EA
Sbjct: 596 ENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHEA 655
Query: 517 LELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMG 576
L LM+ ENTN+LK L+ CGYKPDAEPFLSMM Q F AS LLELRT+ RIFI G++MMG
Sbjct: 656 LGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMG 715
Query: 577 CLDEKGTLEYGQ------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHM 618
CLDE TLEYGQ G +VVAK PCLH GD+RVL+AV+VPAL+HM
Sbjct: 716 CLDETRTLEYGQVVVQYSDPMRPGRRFIITGPVVVAKNPCLHSGDVRVLQAVNVPALNHM 775
Query: 619 VDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVT 678
VDCV+FP KG RPH NECSGSD DG+IYFVCWD + +PP +P YTP P +IL DVT
Sbjct: 776 VDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDYTPEPTQILDHDVT 835
Query: 679 IEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAA 738
IE+VEEYFA+YIVNDSLGII NAH +A EP KA S+ C +L K S DF KTGVAA
Sbjct: 836 IEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFSTAVDFPKTGVAA 895
Query: 739 TIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDT 798
IP L VK YPDFMEK DK YES++++G L+REV AP +IKSF + A + YD
Sbjct: 896 VIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVASKSYDK 955
Query: 799 DMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRDL 858
DMEV+GF+E + F + YD KLGNLMDYYGIKTEAE+LS IM M+KSF K+RD
Sbjct: 956 DMEVDGFEEYVDE--AFYQKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRDA 1013
Query: 859 EAISFSVRSLRKEARAWF 876
E+I +VR+LRKE + F
Sbjct: 1014 ESIGRAVRALRKETLSLF 1031
>gi|383100937|emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
Length = 1107
Score = 898 bits (2321), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/1049 (48%), Positives = 632/1049 (60%), Gaps = 170/1049 (16%)
Query: 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVE-AA 57
M K I ++GF + S + VK+FLE TG GTV ++V Q K G R AIV+FT A
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVFAIVQFTNERYAR 60
Query: 58 DFIKCLARERLSYGNSFLKASSAKRRTPHFAKRTPHYKLGGDLKLNFGCQISKDKFSVFW 117
I A RL YG S+L A + + + H G LK+ FGCQ+S KF W
Sbjct: 61 QIITGAAERRLYYGRSYLNAFEVDQDIVPKPRASLHNISG--LKMYFGCQVSTQKFLTLW 118
Query: 118 SQENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSGHSVS---------- 167
S ++V V +RK F S+ DY+LELS E+IWQI+LH P G S
Sbjct: 119 SAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAP 178
Query: 168 ---------------------------------------IGQSSAICLELPSRALIPKAL 188
IGQS+A CLELP +P
Sbjct: 179 KIFEKEDQPINLLFGMMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFR 238
Query: 189 KDFFHYKE------------------------------------------SLVQFTLLPG 206
++F +Y E +LVQ LPG
Sbjct: 239 ENFANYAEHRASPFLIESGSSYSSNANKLVPVVDPPPGFDLPFEILFKLNTLVQNACLPG 298
Query: 207 FVFSCNSDLNQDGK--------HALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPA 258
+ + K H LE LFHL E CY+P WLR+QY++ S G+ P SP
Sbjct: 299 PALDLDVYQLLNPKKYNRALIDHCLEKLFHLGESCYEPARWLRKQYKELSSKGKLPLSPT 358
Query: 259 VALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYST 318
++LD GL+Y+ ++ VTP++VYF GPE+++SNRV+R Y I+NFLR+SFVDEDL K+ S
Sbjct: 359 ISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSM 418
Query: 319 VLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPEL 378
LSP+ S+ +RRT++Y+R+ S LR+GIVIGDKKFE LAFS+SQ REN+ WMFA L
Sbjct: 419 DLSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDGL 475
Query: 379 TAADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN------------------- 419
T+A IR MGDF I+NV KYAARLGQSF+SSRE L+V S+
Sbjct: 476 TSAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVF 535
Query: 420 ---IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK------------VTLRNNMFKYK 464
IGKISAE A VAKKCG ++PSAFQIRYGGYK ++LR +M K++
Sbjct: 536 SDGIGKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFE 595
Query: 465 SESTSLDILANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQE 515
SE+T LD+LA SKYQ R+ + L D+VF++KQREVV RLDAILTD + E
Sbjct: 596 SENTKLDVLAWSKYQPCYMNRQLITLLSTLGVKDSVFKKKQREVVDRLDAILTDPLEAHE 655
Query: 516 ALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMM 575
AL LM+ ENTN+LK L+ CGYKPDAEPFLSMM Q F AS LLELRT+ RIFI G++MM
Sbjct: 656 ALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMM 715
Query: 576 GCLDEKGTLEYGQ------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHH 617
GCLDE TLEYGQ G +VVAK PCLHPGD+RVL AV+VPAL+H
Sbjct: 716 GCLDETRTLEYGQVVVQYSDPMRPGRRFIITGPVVVAKNPCLHPGDVRVLEAVNVPALNH 775
Query: 618 MVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDV 677
MVDCV+FP KG RPH NECSGSD DG+IYFVCWD + IPP +P YTP P +IL DV
Sbjct: 776 MVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELIPPRTSEPMDYTPEPAQILDHDV 835
Query: 678 TIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVA 737
TIE+VEEYFA+YIVNDSLGII NAH +A EP KA S+ C +L + S+ DF KTGVA
Sbjct: 836 TIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELARKFSVAVDFPKTGVA 895
Query: 738 ATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYD 797
A IP L VK YPDFMEK DK YES++++G L+REV AP +IKSF + A++ YD
Sbjct: 896 AEIPQHLHVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVALKSYD 955
Query: 798 TDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRD 857
DMEV+GF+E + F Y+ YD KLGNLMDYYGIKTEAE+LS IM M+KSF K+RD
Sbjct: 956 KDMEVDGFEEYVDE--AFHYKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRD 1013
Query: 858 LEAISFSVRSLRKEARAWFNKKKNDSDSS 886
E+I +VR+LRKE + FN + +++S+
Sbjct: 1014 AESIGRAVRALRKETLSLFNATEEENESA 1042
>gi|297849898|ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
Length = 1107
Score = 898 bits (2321), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/1049 (48%), Positives = 633/1049 (60%), Gaps = 170/1049 (16%)
Query: 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTT-VEAA 57
M K I ++GF + S + VK+FLE TG GTV ++V Q K G R AIV+FT + A
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVFAIVQFTNEIYAR 60
Query: 58 DFIKCLARERLSYGNSFLKASSAKRRTPHFAKRTPHYKLGGDLKLNFGCQISKDKFSVFW 117
I A RL YG S+L A ++ + + H G LK+ FGCQ+S W
Sbjct: 61 QIITGAAERRLYYGRSYLNAFEVEQDIVPKPRASLHNISG--LKMYFGCQVSTQTLLTLW 118
Query: 118 SQENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSGHSVS---------- 167
S ++VSV +RK F S+ DY+LELS E+IWQI+LH P G S
Sbjct: 119 SAQDVSVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAP 178
Query: 168 ---------------------------------------IGQSSAICLELPSRALIPKAL 188
IGQS+A CLELP +P
Sbjct: 179 KIFEKEDQPINLLFGMMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFR 238
Query: 189 KDFFHYKE------------------------------------------SLVQFTLLPG 206
++F +Y E +LVQ LPG
Sbjct: 239 ENFANYAEHRASTYLIESGSSYSSNANKLVPVVDPPPGFDLPFEILFKLNTLVQNACLPG 298
Query: 207 FVFSCNSDLNQDGK--------HALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPA 258
+ + K H LE LF+L E CY+P WLR+QY++ S G+ P SP
Sbjct: 299 PALDLDVYQLLNPKKIDRALIDHCLEKLFYLGESCYEPARWLRKQYKELSSKGKLPLSPT 358
Query: 259 VALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYST 318
++LD GL+Y+ ++ VTP++VYF GPE+++SNRV+R Y I+NFLR+SFVDEDL K+ S
Sbjct: 359 ISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSM 418
Query: 319 VLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPEL 378
LSP+ S+ +RRT++Y+R+ S LR+GIVIGDKKFE LAFS+SQ REN+ WMFA L
Sbjct: 419 DLSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIEGL 475
Query: 379 TAADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN------------------- 419
T+A IR MGDF I+NV KYAARLGQSF+SSRE L+V S+
Sbjct: 476 TSAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVF 535
Query: 420 ---IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK------------VTLRNNMFKYK 464
IGKISAE A VAKKCG ++PSAFQIRYGGYK ++LR +M K++
Sbjct: 536 SDGIGKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFE 595
Query: 465 SESTSLDILANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQE 515
SE+T LD+LA SKYQ R+ + L D+VFE+KQREVV RLDAILTD + E
Sbjct: 596 SENTKLDVLAWSKYQPCYMNRQLITLLSTLGVEDSVFEKKQREVVDRLDAILTDPLEAHE 655
Query: 516 ALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMM 575
AL LM+ ENTN+LK L+ CGYKPDAEPFLSMM Q F AS LLELRT+ RIFI G++MM
Sbjct: 656 ALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMM 715
Query: 576 GCLDEKGTLEYGQ------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHH 617
GCLDE TLEYGQ G +VVAK PCLHPGD+RVL AV+VPAL+H
Sbjct: 716 GCLDETRTLEYGQVVVQYSDPMRPGRRFIITGPVVVAKNPCLHPGDVRVLEAVNVPALNH 775
Query: 618 MVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDV 677
MVDCV+FP KG RPH NECSGSD DG+IYFVCWD + IPP +P YTP P +IL DV
Sbjct: 776 MVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELIPPRTSEPMDYTPEPAQILDHDV 835
Query: 678 TIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVA 737
TIE+VEEYFA+YIVNDSLGII NAH +A EP KA S+ C +L + S+ DF KTGVA
Sbjct: 836 TIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELARKFSVAVDFPKTGVA 895
Query: 738 ATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYD 797
A IP L VK YPDFMEK DK YES++++G L+REV AP +IKSF + A++ YD
Sbjct: 896 AEIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVALKSYD 955
Query: 798 TDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRD 857
DMEV+GF+E + F Y+ YD KLGNLMDYYGIKTEAE+LS IM M+KSF K+RD
Sbjct: 956 KDMEVDGFEEYVDE--AFHYKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRD 1013
Query: 858 LEAISFSVRSLRKEARAWFNKKKNDSDSS 886
E+I +VR+LRKE + FN + +++S+
Sbjct: 1014 AESIGRAVRALRKETLSLFNATEEENESA 1042
>gi|113205194|gb|AAT39936.2| RNA-directed RNA polymerase-like, putative [Solanum demissum]
Length = 1137
Score = 894 bits (2311), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/1018 (50%), Positives = 622/1018 (61%), Gaps = 157/1018 (15%)
Query: 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKG-SRAHAIVEFTTVEAADF 59
M K I +YGF L S + VK FLE+HTG GTV +EV Q+KG SRA A V+F +AD
Sbjct: 71 MGKTIQVYGFPRLLSAEVVKSFLEKHTGYGTVCALEVKQSKGGSRAFAKVQFVDNISADK 130
Query: 60 IKCLARERLSYGNSFLKASSAKRRTPHFAKRTPHYKLGGDLKLNFGCQISKDKFSVFWSQ 119
I LA +RL +G+S+LKA + H + G + LNFGCQIS DKF+V S
Sbjct: 131 IINLASKRLYFGSSYLKAWELETDIVQLWAYVDH--MDG-ITLNFGCQISDDKFAVLGST 187
Query: 120 ENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSGHSVS--------IGQS 171
E V + +F + + L N S + P V IG S
Sbjct: 188 EVVLHRPYGQNAQFLLIQLFGAPRIYKRLEN-SCYSFFKETPDDQWVRTTDFTPSWIGLS 246
Query: 172 SAICLELPSRALIPKALKDFFHYKESLVQFTLLPGFVFSCN------------------- 212
S++CL+ +P + FFHY E TL GF F +
Sbjct: 247 SSLCLQFRRGVHLPNFQESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPY 306
Query: 213 ------SDLNQDG-------------------------KHALEMLFHLRECCYDPVSWLR 241
S L Q G + ALE L++L+ECCYDPV WL
Sbjct: 307 KILFKISSLVQHGCIPGPALNVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLT 366
Query: 242 EQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDN 301
EQY + Q P SP++ LD GL+YV ++LVTP KVYFCGPE+++SNRV+R+Y ++IDN
Sbjct: 367 EQYDGYFKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDN 426
Query: 302 FLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSN 361
FLR+SFVDE+ KLYST L P+ S+ NG RT IYER+LSTLR G VIGDKKFE LAFS+
Sbjct: 427 FLRVSFVDEEWEKLYSTELLPKASTGNG-IRTNIYERILSTLRKGFVIGDKKFEFLAFSS 485
Query: 362 SQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHV----- 416
SQ R+N++WMFASR LTA DIR MGDF +IKNV KYAAR GQSF SSRE L V
Sbjct: 486 SQLRDNSVWMFASRRGLTANDIRSWMGDFSQIKNVAKYAARFGQSFGSSRETLSVLRHEI 545
Query: 417 ---------------DSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK-------- 453
IGKISA+ A VA CG YTPSAFQIRYGGYK
Sbjct: 546 EVIPDVKVHGTSYVFSDGIGKISADFARKVASNCGLQ-YTPSAFQIRYGGYKGVVAVDPY 604
Query: 454 ----VTLRNNMFKYKSESTSLDILANSKYQ-----REGVARLRL----DNVFERKQREVV 500
++LR +M KY+S++ LD+L SKYQ R+ V L D+V E+KQ+E V
Sbjct: 605 SSMKLSLRKSMSKYESDNNKLDVLEWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAV 664
Query: 501 ARLDAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLEL 560
+LDAIL DS K QEALELMS ENTN+LK +LNCGY PDAEPFLSMM QTF AS LL+L
Sbjct: 665 DQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDL 724
Query: 561 RTRARIFIQNGQAMMGCLDEKGTLEYGQ-------------------------------- 588
RT++RIFI NG+AMMGCLDE TLEYGQ
Sbjct: 725 RTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFIL 784
Query: 589 -GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYF 647
G +VVAK PCLHPGD+RVLRAVDVPALHHMVDCV+FP KG+RPH NECSGSD DG+IYF
Sbjct: 785 KGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYF 844
Query: 648 VCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAY 707
VCWD D IPP Q Q + P P L DVTIE+VEEYF +YIVND LGII NAHVV+A
Sbjct: 845 VCWDQDMIPPRQVQAMEFPPPPSIQLDHDVTIEEVEEYFTNYIVNDGLGIIANAHVVFAD 904
Query: 708 SEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEK-QDKTWYESQHI 766
EPD AM DF KTGV A IPS+LR K YPDFM+K DKT Y S+ +
Sbjct: 905 REPDMAMM--------------DFPKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERV 950
Query: 767 VGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLG 826
+G L+R+V AP ++I F ++ A + YDTD+EV+GF++ + F Y+TEYDNKLG
Sbjct: 951 IGKLFRKVKDKAPQASSIAIFTRDDARRSYDTDLEVDGFEDYIDE--AFDYKTEYDNKLG 1008
Query: 827 NLMDYYGIKTEAEMLSRCIMEMAKSFDKKRDLEAISFSVRSLRKEARAWFNKKKNDSD 884
NLMDYYGIKTEAE+LS IM+ +K+FD+++D EAIS +VR+LRKEAR WF K++ND D
Sbjct: 1009 NLMDYYGIKTEAEILSGGIMKTSKTFDRRKDAEAISIAVRALRKEARTWF-KRRNDID 1065
>gi|356499585|ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Glycine max]
Length = 1125
Score = 894 bits (2310), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 509/1056 (48%), Positives = 638/1056 (60%), Gaps = 187/1056 (17%)
Query: 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKG--SRAHAIVEFTTVEAAD 58
M K I LYGF + + VK F+E++TGEGTV +++ KG RA AI++FTT +A
Sbjct: 1 MGKTIELYGFPTSVNVSDVKTFVEQYTGEGTVFAIKLRHGKGRVPRAFAIIQFTTANSAT 60
Query: 59 FIKCLARE---RLSYGNSFLKASSAKRRTPHFAKRTPHYKLGGDLKLNFGCQISKDKFSV 115
+ A L YG S+LKA +R + H D+KL+FGCQISK +FSV
Sbjct: 61 SMMSRANNILRTLRYGTSYLKAREMERDIVPRPRVFLHSL--DDVKLSFGCQISKGRFSV 118
Query: 116 FWSQENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSGHSVS-------- 167
W +++V V S +RK F S+ +V YKLELS E+IW+IELHRP +
Sbjct: 119 LWKKQDVIVNFGSGMRKMHFLFSHNNVQYKLELSYENIWKIELHRPRNETTRYLLIQLLG 178
Query: 168 -------------------------------------------IGQSSAICLELPSRALI 184
IGQSSAICLELP+ +
Sbjct: 179 APRVFENDVPTSTNIFDDPLFNFFKDAPDEQWIRAIDFTPESRIGQSSAICLELPNGRQL 238
Query: 185 PKALKDFFHYKESLVQFTLLPGFVFSCNSDL----------------------------- 215
P ++F +Y+ES Q+TL G FS N L
Sbjct: 239 PNFRENFAYYEESERQYTLQTGVPFSQNWGLVPIVAPPLGVKISYDILFKVNSLVQHACL 298
Query: 216 ---NQDG----------------KHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTS 256
DG ++ALE +++ +E CY+P WL +QY+ ++ S P S
Sbjct: 299 AGPALDGDFYRLVDPRRMPREFIEYALEKIYYSKEFCYEPTKWLTDQYKTYLESKNHPRS 358
Query: 257 PAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLY 316
PA++LD GL+YV ++ +TP KVYFCGPE+++SNRV+R + + IDNFLR+SFVDE+L KL+
Sbjct: 359 PAISLDTGLVYVRRVQITPCKVYFCGPEMNVSNRVLRHFREHIDNFLRVSFVDEELDKLF 418
Query: 317 STVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA-SR 375
ST +SS + ++T IY R+LS L+NGIV+GDKKFE LAFS+SQ REN+LWMFA +
Sbjct: 419 ST----DLSSRSQNKKTEIYTRILSILKNGIVVGDKKFEFLAFSSSQLRENSLWMFAPTE 474
Query: 376 PELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHV----------------DSN 419
TAA IR+ MG+F +I+NV KYAARLGQSF SS E L V D N
Sbjct: 475 TGCTAAYIRKWMGNFSQIRNVAKYAARLGQSFGSSTETLSVHRDEVEIIPDVKKLTYDGN 534
Query: 420 -------IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK------------VTLRNNM 460
IGKIS E A+ VAKKCGY TPSAFQIRYGGYK ++LR +M
Sbjct: 535 EYVFSDGIGKISLEFAQKVAKKCGYDC-TPSAFQIRYGGYKGVVAVDPKSCYKLSLRKSM 593
Query: 461 FKYKSESTSLDILANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSS 511
KY S++T LD+LA SK+Q R+ ++ L D+VFE+KQRE V +L+ ILTDS
Sbjct: 594 RKYDSDNTKLDVLARSKFQPCYLNRQLISLLSTLGIKDDVFEKKQRETVNQLNTILTDSL 653
Query: 512 KVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNG 571
K QE L+LMS+ E TNVLKE+L CGYKP+ EPFLSMM QTF AS LLELR ++RIFI G
Sbjct: 654 KAQEVLDLMSAGEITNVLKEMLICGYKPNEEPFLSMMLQTFRASKLLELRLKSRIFIPKG 713
Query: 572 QAMMGCLDEKGTLEYGQ-----------------------------GLMVVAKKPCLHPG 602
+AMMGCLDE TLEYGQ G +VVAK PCLHPG
Sbjct: 714 RAMMGCLDETRTLEYGQVFVQFSNNRLQNLSDDFFSYDLPKNYMVKGKVVVAKNPCLHPG 773
Query: 603 DMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQP 662
D+RVL+AVDVP L+HMVDCV+FP KG RPH NECSGSD DG+IYFVCWDH+ IP P
Sbjct: 774 DVRVLQAVDVPDLYHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDHELIPSRPIDP 833
Query: 663 TAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLV 722
YT L DV IE+VEEYFA+YIVNDSLGII NAH V+A E KAMS++C L
Sbjct: 834 MDYTAPATVELDHDVMIEEVEEYFANYIVNDSLGIIANAHTVFADKEHLKAMSDQCVKLA 893
Query: 723 KLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTT 782
+L S DF KTGV A IP L VK YPDFMEK DK Y+S +++G L+REV I+ S
Sbjct: 894 RLFSTAVDFPKTGVPAVIPPELHVKEYPDFMEKPDKPTYKSHNVIGKLFREVKEISTSAG 953
Query: 783 TIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLS 842
+I SF K A YD +MEV+GF + D F ++T YD KLGNLMDYYGIKTEAE+L
Sbjct: 954 SITSFTKLVARDSYDHEMEVDGFMDYVD--DAFYHKTNYDYKLGNLMDYYGIKTEAEILG 1011
Query: 843 RCIMEMAKSFDKKRDLEAISFSVRSLRKEARAWFNK 878
IM+M+KSF+K+RD EAI+ +VRSLRKEARAWFN+
Sbjct: 1012 GNIMKMSKSFNKRRDAEAINMAVRSLRKEARAWFNE 1047
>gi|377347180|dbj|BAL63010.1| RNA-dependent RNA polymerase 1 [Cucumis sativus]
Length = 1115
Score = 891 bits (2302), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/1067 (46%), Positives = 629/1067 (58%), Gaps = 183/1067 (17%)
Query: 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGS--RAHAIVEFTTVEAAD 58
M K I L+GF S ++VK F+E TG GT+ + ++KG R +AI++FT E A
Sbjct: 1 MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60
Query: 59 FIKCLARERLSYGNSFLKASSAKRRT-PHFAKRTPHYKLGGDLKLNFGCQISKDKFSVFW 117
I A ERL YG S+LKA K P ++K L+L+ GCQISK+ FSV W
Sbjct: 61 SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKA---LRLHLGCQISKESFSVLW 117
Query: 118 SQENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSGHSV----------- 166
++ NVSV D+RK FF+SY VDY L L E+IWQ+ELH+P G SV
Sbjct: 118 TESNVSVDFGFDVRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAP 177
Query: 167 ---------------------------------------SIGQSSAICLELPSRALIPKA 187
SIGQS+A+CLE+ +P
Sbjct: 178 RIYERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEILYGRQLPNF 237
Query: 188 LKDFFHYKESLVQFTLLPGFVFSCNSDLN-----------------------QDG----- 219
F ++KE +FTL+ G +S N +L Q G
Sbjct: 238 HDKFAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGP 297
Query: 220 --------------------KHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAV 259
HAL+ L HL+ECCY+P WL E+YRK+ P P +
Sbjct: 298 ALDISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPIL 357
Query: 260 ALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTV 319
L+ GL+YV+++ VTP KVYFCGPE+++SNRV+R YPD IDNFLR+SFVDE+LGK+YST
Sbjct: 358 TLNEGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTE 417
Query: 320 LSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELT 379
LSP+ SS+ + +T+I +R+LS LR+GI IGDKKFE LA+S+SQ REN WMFA + ELT
Sbjct: 418 LSPRASSSLEDGKTKILKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELT 477
Query: 380 AADIRERMGDFREIKNVTKYAARLGQSFASSREALHV----------------------- 416
AA IR+ MGDF I+NV KYAARLGQ F SS E L V
Sbjct: 478 AAKIRQWMGDFHNIRNVAKYAARLGQPFGSSTETLSVSRREVKVIPDIEVESGSGVNYVF 537
Query: 417 DSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGY------------KVTLRNNMFKYK 464
IGKI+A A VAKKCG +TPSAFQIRY G+ K++LRN+M KY+
Sbjct: 538 SDGIGKIAASFARKVAKKCGIR-HTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYE 596
Query: 465 SESTSLDILANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQE 515
S T LD+L+ SKY R+ + L D+VFE KQ+E++ LD I +D K Q+
Sbjct: 597 STDTKLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQ 656
Query: 516 ALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMM 575
ALELMS ENT +LKE++ CGYKPD+EPFL MM TF S L+ELR ++RIFI NG+AMM
Sbjct: 657 ALELMSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMM 716
Query: 576 GCLDEKGTLEYGQ------------------------------GLMVVAKKPCLHPGDMR 605
GCLDE LEYG+ G +VVAK PCLHPGD+R
Sbjct: 717 GCLDETRNLEYGEVFWQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVR 776
Query: 606 VLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAY 665
VL AVDVP+LHHM+DCV+FP KG RPH NECSGSD DG+IYFVCWD D IPP Q +P Y
Sbjct: 777 VLTAVDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDY 836
Query: 666 TPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLS 725
TP P ++L DVT+E+V+EYFA+Y+VNDSLGII NAH +A EP KAMSN C L KL
Sbjct: 837 TPVPSQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLF 896
Query: 726 SIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIK 785
SI DF KTGV A IP+ LRVK YPDFM+K DK YES++++G L+R ++ I P+ I+
Sbjct: 897 SIAVDFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIR 956
Query: 786 SF--AKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSR 843
SF E A Q YD DMEV GF+E D ++ YD +LGNLM Y+ IKTEAE++S
Sbjct: 957 SFNYTPEMARQDYDPDMEVEGFEEYLD--DAIYHKNNYDMRLGNLMHYHKIKTEAELISG 1014
Query: 844 CIMEMAKSFDKKRDLEAISFSVRSLRKEARAWFNKKKNDSDSSHKDV 890
+ + SF K + E+I +V+SLRKEAR WFN+K + H +V
Sbjct: 1015 GSLTSSLSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNV 1061
>gi|356519367|ref|XP_003528344.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Glycine max]
Length = 1135
Score = 851 bits (2199), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/1059 (45%), Positives = 628/1059 (59%), Gaps = 177/1059 (16%)
Query: 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGS-RAHAIVEFTTVEAADF 59
M+K I ++GF S S + VK+FLE+HTG TV VEV Q+KG H V+FT ++ +
Sbjct: 1 MSKTIQMHGFQSNVSAEEVKKFLEKHTGHQTVHAVEVWQHKGDPTTHVDVQFTDRKSVET 60
Query: 60 IKCLARERLSYGNSFLKASSAKRRTPHFAKRTPHYKLGGDLKLNFGCQISKDKFSVFWSQ 119
I L + LSY + L A+ + PH D+ ++FGCQ SKDK SV W
Sbjct: 61 ILLLVTQHLSYSDYVLNATEINHDIFPKPRNFPHRM--DDIVVHFGCQTSKDKLSVLWEH 118
Query: 120 ENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPS----------------- 162
NVSVK S LRK F +Y ++DYKL++S+ESI +IEL
Sbjct: 119 PNVSVKFGSRLRKMYIFFNYLTMDYKLQISSESISRIELRHSDDLTKKFLLFQLRGAPMI 178
Query: 163 ----------------GH---------SVSIGQSSAICLELPSRALIPKALKDFFHYKE- 196
H S SIGQSS +C ELP +PK + + +Y E
Sbjct: 179 YEKDVSKSKYFKEACDNHWFRGVDFTPSSSIGQSSTLCFELPQSIEVPKFNQHYRNYSEV 238
Query: 197 ----------------------------------------SLVQFTLLPGFVFSCNSDLN 216
SL+Q LP N
Sbjct: 239 DDSIFTLEKHLGFSSNFKFVPIVIPPEGFNLPYKILFKINSLIQHGCLPVLAIDINLFHL 298
Query: 217 QDGKH--------ALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYV 268
D + AL L ++ECCY+P WL +QY K+ ++ P S A++LD GL+YV
Sbjct: 299 VDPRRVRLEYIESALHKLDQMKECCYEPAQWLEKQYNKYSTNSLVPLSSAISLDDGLVYV 358
Query: 269 NKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTN 328
+++ VTPSK+YFCGPE++LSNRV+R+YP++ DNFLR+SFVDED+ KL+S L P+ SST+
Sbjct: 359 HRVQVTPSKIYFCGPEVNLSNRVLRNYPEDTDNFLRVSFVDEDMDKLHSADLVPRSSSTD 418
Query: 329 GERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMG 388
+R T+++ERVLSTL+NGI IGDKKFE LAFS SQ R+N++WMFASR LTA+DIR+ MG
Sbjct: 419 VDRETKLHERVLSTLKNGIAIGDKKFEFLAFSPSQLRDNSVWMFASRTGLTASDIRKWMG 478
Query: 389 DFREIKNVTKYAARLGQSFASSREALHVDSN----------------------IGKISAE 426
+F EI+NV KYAARLGQSF+SSRE + V + IGKIS+E
Sbjct: 479 EFHEIRNVAKYAARLGQSFSSSRETVSVGEHEIEIIPDIELRRGETKYCFTDGIGKISSE 538
Query: 427 LAETVAKKCGYAIYT-PSAFQIRYGGY------------KVTLRNNMFKYKSESTSLDIL 473
LA+ VAKKCG PSAFQIRYGGY K++LR +MFKYKSE+T LD+L
Sbjct: 539 LAQEVAKKCGCRDNNIPSAFQIRYGGYKGVVAIDPTSSTKLSLRKSMFKYKSENTKLDVL 598
Query: 474 ANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEALELMSSAE 524
A SKY+ R+ + L D VF +KQRE++ +L I S+K L+LM + E
Sbjct: 599 AWSKYKPCYLNRQIITLLSTLGVKDRVFRKKQREILNQLKMI---STKPLMVLDLMFTGE 655
Query: 525 NTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL 584
TN+L+E+L CG+ EPFLSMM QT AS L EL+ + RI ++ G+A++GCLDE TL
Sbjct: 656 ITNILREMLICGFHQTKEPFLSMMLQTLCASKLQELQLKTRILVKKGRALLGCLDETRTL 715
Query: 585 EYGQ----------------------------------GLMVVAKKPCLHPGDMRVLRAV 610
+YG+ G +VVAK PCLHPGD+R+LRAV
Sbjct: 716 KYGEVFVQIAHQRNKQIHAMPSLSSNRYGGNKSKHIVKGKVVVAKNPCLHPGDVRILRAV 775
Query: 611 DVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPE 670
DVP+LHHMVDCV+FP KG RPH NECSGSD DG+IYFV WD D IPP Q P + P+
Sbjct: 776 DVPSLHHMVDCVVFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPPHQENPMDHAPSQV 835
Query: 671 KILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGD 730
+ DVT+++V+EYFA YIV D LGI+ +AH V+A +P+KAMS C +L KL SI D
Sbjct: 836 MNVDHDVTLQEVQEYFAHYIVEDRLGIVASAHTVFADKDPEKAMSPACTELAKLHSIAVD 895
Query: 731 FSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKE 790
F+K+GV A IP LRV+ YPDFMEK DK Y+S I+G LYREV +A K+F +
Sbjct: 896 FAKSGVPAEIPQHLRVEEYPDFMEKPDKPSYQSNSIIGKLYREVRNVAQHKNLNKTFTRR 955
Query: 791 GAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAK 850
A Q YD DME++GF++ +Y+ YD KLGNLMDYYGI+TEAE++S I++M+K
Sbjct: 956 VARQSYDPDMEIDGFEKYTAT--ACEYKNMYDFKLGNLMDYYGIETEAEIISGNILKMSK 1013
Query: 851 SFDKKRDLEAISFSVRSLRKEARAWFNKKKNDSDSSHKD 889
SF++++DLE I+ +V SLRKE R+WFN N S+S +D
Sbjct: 1014 SFNERKDLEGINHAVMSLRKETRSWFNVMVNKSNSQGRD 1052
>gi|113205271|gb|AAT38699.2| RNA dependent RNA polymerase family protein [Solanum demissum]
Length = 963
Score = 842 bits (2176), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/842 (54%), Positives = 548/842 (65%), Gaps = 130/842 (15%)
Query: 168 IGQSSAICLELPSRALIPKALKDFFHYKESLVQFTLLPGFVFSCN--------------- 212
IG SS++CL+ +P + FFHY E TL GF F +
Sbjct: 55 IGLSSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGI 114
Query: 213 ----------SDLNQDG-------------------------KHALEMLFHLRECCYDPV 237
S L Q G + ALE L++L+ECCYDPV
Sbjct: 115 AIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPV 174
Query: 238 SWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPD 297
WL EQY ++ Q P SP++ LD GL+YV ++LVTP KVYFCGPE+++SNRV+R+Y +
Sbjct: 175 RWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSE 234
Query: 298 EIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETL 357
+IDNFLR+SFVDE+ KLYST L P+ S+ NG RT IYER+LSTLR G VIGDKKFE L
Sbjct: 235 DIDNFLRVSFVDEEWEKLYSTELLPKASTGNG-IRTNIYERILSTLRKGFVIGDKKFEFL 293
Query: 358 AFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHV- 416
AFS+SQ R+N++WMFASR LT DIR MGDF +IKNV KYAARLGQSF SSRE L V
Sbjct: 294 AFSSSQLRDNSVWMFASRRGLTTNDIRSWMGDFSQIKNVAKYAARLGQSFGSSRETLSVL 353
Query: 417 -------------------DSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK---- 453
IGKISA+ A VA KCG YTPSAFQIRYGGYK
Sbjct: 354 RHEIEVIPDVKVHGTSYVFSDGIGKISADFARRVASKCGLQ-YTPSAFQIRYGGYKGVVA 412
Query: 454 --------VTLRNNMFKYKSESTSLDILANSKYQ-----REGVARLRL----DNVFERKQ 496
++LR +M KY+S++ LD+L SKYQ R+ V L D+V E+KQ
Sbjct: 413 VDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQ 472
Query: 497 REVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASN 556
+E V +LDAIL DS K QEALELMS ENTN+LK +LNCGY PDAEPFLSMM QTF AS
Sbjct: 473 KEAVHQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASK 532
Query: 557 LLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ---------------------------- 588
LL+LRTR+RIFI NG+AMMGCLDE TLEYGQ
Sbjct: 533 LLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNC 592
Query: 589 -----GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDG 643
G +VVAK PCLHPGD+RVLRAVDVPALHHMVDCV+FP KG+RPH NECSGSD DG
Sbjct: 593 NFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDG 652
Query: 644 EIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHV 703
+IYFVCWD D IPP Q Q Y PAP L +VTIE+VEEYF +YIVNDSLGII NAHV
Sbjct: 653 DIYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHNVTIEEVEEYFTNYIVNDSLGIIANAHV 712
Query: 704 VYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEK-QDKTWYE 762
V+A EPD AMS+ C L +L SI DF KTGV A IPS+LR K YPDFM+K DKT Y
Sbjct: 713 VFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYI 772
Query: 763 SQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYD 822
S+ ++G L+R+V AP ++I F ++ A + YD D+EV+GF++ + F Y+TEYD
Sbjct: 773 SERVIGKLFRKVKDKAPQASSIAIFTRDVARRSYDADLEVDGFEDYIDE--AFDYKTEYD 830
Query: 823 NKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRDLEAISFSVRSLRKEARAWFNKKKND 882
NKLGNLMDYYGIKTEAE+LS IM+ +K+FD+++D EAIS +VR+LRKEAR WF K++ND
Sbjct: 831 NKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKDAEAISVAVRALRKEARTWF-KRRND 889
Query: 883 SD 884
D
Sbjct: 890 ID 891
>gi|113205254|gb|ABI34311.1| RNA dependent RNA polymerase family protein [Solanum demissum]
Length = 963
Score = 841 bits (2173), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/842 (53%), Positives = 548/842 (65%), Gaps = 130/842 (15%)
Query: 168 IGQSSAICLELPSRALIPKALKDFFHYKESLVQFTLLPGFVFSCN--------------- 212
IG SS++CL+ +P + FFHY E TL GF F +
Sbjct: 55 IGLSSSLCLQFRRGVHLPNFQEKFFHYAERENNITLQTGFTFFISQKSSLVPNVQPPEGI 114
Query: 213 ----------SDLNQDG-------------------------KHALEMLFHLRECCYDPV 237
S L Q G + ALE L++L+ECCYDPV
Sbjct: 115 AIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPV 174
Query: 238 SWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPD 297
WL EQY ++ Q P SP++ LD GL+YV ++LVTP KVYFCGPE+++SNRV+R+Y +
Sbjct: 175 RWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSE 234
Query: 298 EIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETL 357
+IDNFLR+SFVDE+ KLYST L P+ S+ NG RT IYER+LSTLR G VIGDKK E L
Sbjct: 235 DIDNFLRVSFVDEEWEKLYSTELLPKASTGNG-IRTNIYERILSTLRKGFVIGDKKIEFL 293
Query: 358 AFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHV- 416
AFS+SQ R+N++WMFASRP LTA DIR MGDF +IKNV KYAARLGQSF SS+E L V
Sbjct: 294 AFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVL 353
Query: 417 -------------------DSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK---- 453
IGKISA+ A VA KCG YTPSAFQIRYGGYK
Sbjct: 354 RHEIEVIPDVKVHGTSYVFSDGIGKISADFARRVASKCGLQ-YTPSAFQIRYGGYKGVVA 412
Query: 454 --------VTLRNNMFKYKSESTSLDILANSKYQ-----REGVARLRL----DNVFERKQ 496
++LR +M KY+S++ LD+L SKYQ R+ + L D+V E+KQ
Sbjct: 413 VDPYSSMKLSLRKSMSKYESDNNKLDVLEWSKYQPCYLNRQLITLLSTLGVKDDVLEQKQ 472
Query: 497 REVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASN 556
+E V +LDAIL DS K QEALELMS ENTN+LK +LNCGY PDAEPFLSMM QTF AS
Sbjct: 473 KEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASK 532
Query: 557 LLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ---------------------------- 588
LL+LRT++RIFI NG+AMMGCLDE TLEYGQ
Sbjct: 533 LLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNC 592
Query: 589 -----GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDG 643
G +VVAK PCLHPGD+RVLRAVDVPALHHMVDCV+FP KG+RPH NECSGSD DG
Sbjct: 593 NFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDG 652
Query: 644 EIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHV 703
+IYFVCWD D IPP Q QP Y PAP L DVTIE+VEEYF +YIVNDSLGII NAHV
Sbjct: 653 DIYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIISNAHV 712
Query: 704 VYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEK-QDKTWYE 762
V+A EPD AMS+ C L +L SI DF KTGV A IPS+LR K YPDFM+K DKT Y
Sbjct: 713 VFADREPDMAMSDPCKKLAELCSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYI 772
Query: 763 SQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYD 822
S+ ++G L+R+V AP ++ F ++ A + YD D+EV+GF++ + F Y+TEYD
Sbjct: 773 SERVIGKLFRKVKDKAPQASSTAIFTRDVARRSYDADLEVDGFEDYIDE--AFDYKTEYD 830
Query: 823 NKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRDLEAISFSVRSLRKEARAWFNKKKND 882
+KLGNLMDYYGIKTEAE+LS IM+ +K+FD+++D EAIS +VR+LRKEAR WF K+ ND
Sbjct: 831 SKLGNLMDYYGIKTEAEILSGGIMKTSKTFDRRKDAEAISIAVRALRKEARTWF-KRHND 889
Query: 883 SD 884
D
Sbjct: 890 ID 891
>gi|242066062|ref|XP_002454320.1| hypothetical protein SORBIDRAFT_04g028630 [Sorghum bicolor]
gi|241934151|gb|EES07296.1| hypothetical protein SORBIDRAFT_04g028630 [Sorghum bicolor]
Length = 1114
Score = 830 bits (2145), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/1050 (45%), Positives = 620/1050 (59%), Gaps = 174/1050 (16%)
Query: 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKG----SRAHAIVEFTTVEA 56
+ + I ++GFA S ++VKEFLE +G GT+ +++ + SRA AIV+F + E+
Sbjct: 2 VGRTIQVHGFALTDSAESVKEFLERISGAGTIYALKLRHPRNISANSRAFAIVQFQSQES 61
Query: 57 ADFIK-CLARERLSYGNSFLKASSAKRR-TPHFAKRTPHYKLGGDLKLNFGCQISKDKFS 114
A ++ + R G +LK A R P R P + L D L+ GC + ++ S
Sbjct: 62 ASLVEDVVQRNAPRIGRFYLKTRPADRDIVPR--PRIPMFSLE-DTVLHLGCLVKENILS 118
Query: 115 VFWSQENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSGH---------- 164
++ NVSV+ D++K F+LSY + YKLELS ESIW+I+LHRP +
Sbjct: 119 ALFTASNVSVQFGFDMKKIYFYLSYNFIKYKLELSYESIWEIQLHRPPAYRSRTKFLLIQ 178
Query: 165 -------------------------------------------SVSIGQSSAICLELPSR 181
SVSIGQSS CLE+P +
Sbjct: 179 VQAAPKIYELLPRRPGLMYEDPFFNWFMDDTDEQWTRTIDFTPSVSIGQSSIFCLEVPQQ 238
Query: 182 ALIPKALKDFFHYKESLVQFTLLPGFVFSCNS-----------------------DLNQD 218
+P+ F +YKE + F G+ +SC + L Q+
Sbjct: 239 CELPRIGDYFVYYKERNLDFECRNGYSYSCGNCLVPIVKSPDYIEVPYEILFKINHLVQN 298
Query: 219 G-------------------------KHALEMLFHLRECCYDPVSWLREQY-RKHVSSGQ 252
G K AL + +L+ C +P +WL QY R S
Sbjct: 299 GTLSGPTVDHSFFCHVSPEFEPIDHIKRALLKMSYLKSTCLNPTNWLSVQYSRIRRSRHA 358
Query: 253 FPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDL 312
S ++LD GL+YV+++ VTP+KVYF GPEI++SNRVVR++ +IDNFLR+SFVDED
Sbjct: 359 SQRSSNISLDDGLVYVHRVQVTPAKVYFYGPEINVSNRVVRNFSADIDNFLRISFVDEDC 418
Query: 313 GKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMF 372
KL S LSP+ +S N RRT +Y RVLS L NGI IGDK FE LAFS+SQ R+N+ WMF
Sbjct: 419 EKLRSLDLSPRSTSGNDARRTALYNRVLSVLSNGINIGDKHFEFLAFSSSQLRDNSAWMF 478
Query: 373 ASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHV---------------- 416
ASR LTA+DIR+ MGDFR+I+NV KYAARLGQSF+SS E L V
Sbjct: 479 ASRQGLTASDIRKWMGDFRDIRNVAKYAARLGQSFSSSTETLIVRKHEVEQIPDIKNGTN 538
Query: 417 ---DSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK------------VTLRNNMF 461
+GKISA A+ VA KC + PS FQIRYGGYK ++LR +M
Sbjct: 539 YIFSDGVGKISANFAKEVAMKCKLRRFAPSVFQIRYGGYKGVVAVDPRSNRKLSLRRSML 598
Query: 462 KYKSESTSLDILANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSK 512
K++SE+ +LD+LA SKYQ R+ + L DNVFE KQ+E + +L+ ++T+
Sbjct: 599 KFQSENITLDVLAYSKYQPCFLNRQLITLLSTLGVGDNVFELKQKEAIKQLNRMVTEPQA 658
Query: 513 VQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQ 572
+EA+ELM E TNV+KELL+CGY+PD EP+LSM+ QTF AS LLEL+T++RIFI G+
Sbjct: 659 AREAVELMPMGEVTNVVKELLSCGYQPDHEPYLSMLLQTFRASKLLELKTKSRIFITQGR 718
Query: 573 AMMGCLDEKGTLEYGQ------------------GLMVVAKKPCLHPGDMRVLRAVDVPA 614
AMMGCLDE TL+YGQ G +VVAK PCLHPGD+RVL+AVDVP+
Sbjct: 719 AMMGCLDETRTLKYGQVFIQASYCADDHHKIVVTGKVVVAKNPCLHPGDIRVLQAVDVPS 778
Query: 615 LHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILA 674
LHHM DCV+FP +G RPH NECSGSD DG+IYFV WD D IP P YTPAP + L
Sbjct: 779 LHHMFDCVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPDLIPSHMEDPMDYTPAPAETLD 838
Query: 675 RDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKT 734
DVTIE+++EYF +YIVN+SLGII NAHVVYA E KA S C +L KL SI DF KT
Sbjct: 839 HDVTIEEIQEYFTNYIVNESLGIIANAHVVYADKEDLKAKSRPCLELAKLFSIAVDFPKT 898
Query: 735 GVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQ 794
GV A IP L VK YPDFMEK DK YES+ ++G LYRE+ P I+ F +E A +
Sbjct: 899 GVPALIPPELHVKEYPDFMEKLDKATYESKGVIGKLYREIKKHTPH---IRHFTREVAKR 955
Query: 795 FYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDK 854
YDTD+ V+G+++ + +++ EYD +LGNLMD+YGIK+EAE++S C ++MAK+F K
Sbjct: 956 SYDTDLIVDGYEDYITE--AIEFKEEYDFRLGNLMDHYGIKSEAEIISGCFLKMAKNFTK 1013
Query: 855 KRDLEAISFSVRSLRKEARAWFNKKKNDSD 884
D +AI +VRSLRKEAR+WFN+ D
Sbjct: 1014 SSDADAIRMAVRSLRKEARSWFNEMSTSED 1043
>gi|4138343|emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]
Length = 775
Score = 827 bits (2135), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/739 (57%), Positives = 522/739 (70%), Gaps = 79/739 (10%)
Query: 220 KHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVY 279
+HALE L++L+ECCYDPV WL +QY +++ Q P SP++ LD GL+YV ++LVTP KVY
Sbjct: 3 EHALEKLYNLKECCYDPVRWLTKQYDEYLKRRQLPKSPSITLDDGLMYVRRVLVTPCKVY 62
Query: 280 FCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERV 339
F GPE+++SNRV+R+Y ++IDNFLR+SFVDE+ K++S L P+ ++ NG RT IYER+
Sbjct: 63 FLGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKIFSMDLLPR-ANRNG-IRTDIYERI 120
Query: 340 LSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKY 399
LSTL+NG+VIG KKFE LAFS+SQ R+N++WMFASRP LTA DIR MGDF++I+NV KY
Sbjct: 121 LSTLQNGLVIGAKKFEFLAFSSSQLRDNSVWMFASRPGLTAYDIRTWMGDFQQIRNVAKY 180
Query: 400 AARLGQSFASSREALHV--------------------DSNIGKISAELAETVAKKCGYAI 439
AARLGQSF SSRE L V IGKISA+ A VAKKCG
Sbjct: 181 AARLGQSFGSSRETLSVGRHEIKYIPDVEVHGTNYVFSDGIGKISADFAHRVAKKCGLQ- 239
Query: 440 YTPSAFQIRYGGYK------------VTLRNNMFKYKSESTSLDILANSKYQ-----REG 482
+TPSAFQIRYGGYK ++LR +M KY+S +T LD+L SKYQ R+
Sbjct: 240 HTPSAFQIRYGGYKGVVAVDPYSPMKLSLRKSMLKYESNNTKLDVLGWSKYQPCYLNRQL 299
Query: 483 VARLRL----DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNCGYK 538
V + D VF+RKQ E VA+LDAIL DS K QEAL+LMS ENTN+LKE+LNCGY
Sbjct: 300 VTLMSTLGVKDEVFKRKQNEAVAQLDAILHDSLKAQEALDLMSPGENTNILKEMLNCGYL 359
Query: 539 PDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ---------- 588
PDAEPFLSMM QTF AS LL+LRTR RIFI G++MMGCLDE TLEYGQ
Sbjct: 360 PDAEPFLSMMLQTFRASKLLDLRTRTRIFIPKGRSMMGCLDESRTLEYGQVFVQFTGAGG 419
Query: 589 -----------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFP 625
G +VVAK PCLHPGD+RVL+AVDVPALHHMVDCV+FP
Sbjct: 420 RQFYEESHHFNDSGSANYNFILKGNVVVAKNPCLHPGDIRVLKAVDVPALHHMVDCVVFP 479
Query: 626 AKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEY 685
KG+RPH NECSGSD DG+IYFVCWD D IPP Q QP YTPAP L DVTIE+VEEY
Sbjct: 480 QKGKRPHPNECSGSDLDGDIYFVCWDPDLIPPRQVQPMDYTPAPSIQLDHDVTIEEVEEY 539
Query: 686 FADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLR 745
F +Y+VND LG+I NAHVV+A EP+ AMS+ C +L +L SI DF KTGV A IPS+LR
Sbjct: 540 FTNYMVNDGLGVIANAHVVFADREPNMAMSDPCIELAQLFSIAVDFPKTGVPAEIPSQLR 599
Query: 746 VKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGF 805
K YPDFMEK DKT Y S+ ++G L+REV ++I +F ++ A + YDTD+EV+GF
Sbjct: 600 PKEYPDFMEKPDKTTYHSEKVIGKLFREVKDKTTQASSITTFTRDVARRSYDTDLEVDGF 659
Query: 806 KEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRDLEAISFSV 865
++ + F Y++EYD KLGNLMDYYGIKTEAE LS IM+ +K+FD++RD EAI +V
Sbjct: 660 EDYIDE--AFDYKSEYDKKLGNLMDYYGIKTEAETLSGGIMKASKTFDRRRDAEAIGVAV 717
Query: 866 RSLRKEARAWFNKKKNDSD 884
RSLRKEAR WF ++ + D
Sbjct: 718 RSLRKEARTWFKRRSDIDD 736
>gi|113205326|gb|AAT38754.2| RNA-directed RNA polymerase, putative [Solanum demissum]
Length = 1021
Score = 818 bits (2113), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/900 (50%), Positives = 550/900 (61%), Gaps = 188/900 (20%)
Query: 168 IGQSSAICLELPSRALIPKALKDFFHYKESLVQFTLLPGFVFSCN--------------- 212
IG SS++CL+ +P + FFHY E TL GF F +
Sbjct: 55 IGLSSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTGFTFFISQKSALVPNVQPPEGI 114
Query: 213 ----------SDLNQDG-------------------------KHALEMLFHLRECCYDPV 237
S L Q G + ALE L++L+ECCYDPV
Sbjct: 115 AIPYKILFKISSLVQHGCIPGPSLNVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPV 174
Query: 238 SWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPD 297
WL EQY ++ Q P SP++ LD GL+YV ++LVTP KVYFCGPE+++SNRV+R+Y +
Sbjct: 175 RWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSE 234
Query: 298 EIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETL 357
+IDNFLR+SFVDE+ KLYST L P+ S+ NG RT IYER+LSTLR G VIGDKKFE L
Sbjct: 235 DIDNFLRVSFVDEEWEKLYSTELLPKASTGNG-IRTNIYERILSTLRKGFVIGDKKFEFL 293
Query: 358 AFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHV- 416
AFS+SQ R+N++WMFASRP LTA DIR MGDF +IKNV KYAARLGQSF SS+E L V
Sbjct: 294 AFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVL 353
Query: 417 -------------------DSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK---- 453
IGKISA+ A VA KCG YTPSAFQIRYGGYK
Sbjct: 354 RHEIEVIPDVKVHGTSYVFSDGIGKISADFARRVASKCGLQ-YTPSAFQIRYGGYKGVVA 412
Query: 454 --------VTLRNNMFKYKSESTSLDILANSKYQ-----REGVARLRL----DNVFERKQ 496
+TLR +M KY+S++ LD+L SKYQ R+ + L D++ E+KQ
Sbjct: 413 VDPYSSMKLTLRKSMSKYESDNNKLDVLGWSKYQPCFLNRQLITLLSTLGVRDDILEQKQ 472
Query: 497 REVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASN 556
+E V +LDAIL DS K QEALELMS ENTN+LK +LNCGY PDAEPFLSMM QTF AS
Sbjct: 473 KEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASK 532
Query: 557 LLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ---------------------------- 588
LL+LRT++RIFI NG+AMMGCLDE TLEYGQ
Sbjct: 533 LLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNC 592
Query: 589 -----GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGER------------- 630
G +VVAK PCLHPGD+RVLRAVDVPALHHMVDCV+FP KG+R
Sbjct: 593 NFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRLGMYFNCFPTSEV 652
Query: 631 --------------------PHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPE 670
PH NECSGSD DG+IYFVCWD D IPP Q QP Y PAP
Sbjct: 653 EVKSAYTLPSSDPTLWYLTGPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPS 712
Query: 671 KILARDVTIE-------------------------DVEEYFADYIVNDSLGIICNAHVVY 705
L DVTIE +VEEYF +YIVNDSLGII NAHVV+
Sbjct: 713 IQLDHDVTIERGDWPVCATTVQVLRNSFSPVCLLQEVEEYFTNYIVNDSLGIISNAHVVF 772
Query: 706 AYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEK-QDKTWYESQ 764
A EPD AMS+ C L +L SI DF KTGV A IPS+LR K YPDFM+K DKT Y S+
Sbjct: 773 ADREPDMAMSDPCKKLAELCSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYISE 832
Query: 765 HIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNK 824
++G L+R+V AP ++ F ++ A + YD D+EV+GF++ + F Y+TEYDNK
Sbjct: 833 RVIGKLFRKVKDKAPQASSTAIFTRDVARRSYDADLEVDGFEDYIDE--AFDYKTEYDNK 890
Query: 825 LGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRDLEAISFSVRSLRKEARAWFNKKKNDSD 884
LGNLMDYYGIKTEAE+LS IM+ +K+FD+++D EAIS +VR+LRKEAR WF K++ND D
Sbjct: 891 LGNLMDYYGIKTEAEILSGGIMKTSKTFDRRKDAEAISIAVRALRKEARTWF-KRRNDID 949
>gi|197223666|gb|ACH53361.1| RNA-directed RNA polymerase 1b [Hordeum vulgare]
Length = 1115
Score = 799 bits (2064), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/1052 (44%), Positives = 613/1052 (58%), Gaps = 174/1052 (16%)
Query: 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKG----SRAHAIVEFTT-VEA 56
K + + GF S + VK+ LE+ G G V V++ K SR+ AIV+F + A
Sbjct: 3 GKTLQVSGFPSTVNADHVKDLLEQIVGTGNVFAVKLRPPKNISANSRSFAIVQFQSEAHA 62
Query: 57 ADFIKCLARERLSYGNSFLKASSAKRR-TPHFAKRTPHYKLGGDLKLNFGCQISKDKFSV 115
+ + R L G+ +LKA A+R P RT + L G KL+FGC + + SV
Sbjct: 63 SLVLNAAQRNALRSGSHYLKARYAERDIVPR--PRTTIFNLQG-AKLHFGCLLKERVLSV 119
Query: 116 FWSQENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSG------------ 163
WS NVSV+ +++ F L Y S YKLELS ESIW+I+LHRP G
Sbjct: 120 LWSGTNVSVEFGFAMKRIDFCLIYNSKKYKLELSYESIWEIQLHRPPGLQKKFLLIQVQA 179
Query: 164 ---------------------------------------HSVSIGQSSAICLELPSRALI 184
S SIGQS +CLELP +
Sbjct: 180 APKIYEQNIRLSGSMYDDPLFNYFRDDTDDQWTRTTDFTPSASIGQSYILCLELPHICYL 239
Query: 185 PKALKDFFHYKESLVQFTLLPGFVFSCNS-----------------------DLNQDG-- 219
P + F +Y+ F L PG+ +S N+ L Q+G
Sbjct: 240 PNIREYFVYYEVHNDIFNLQPGYSYSSNTCFVPVVKSHYFTDVPYEILFKINHLVQNGTL 299
Query: 220 -----------------------KHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTS 256
K ALE + +L++ C +P +WL EQY+K + + TS
Sbjct: 300 SGPTLDDNFYRLVSPGYERIDRIKRALEKMSYLKKTCLNPTNWLSEQYKK-MRRSRVLTS 358
Query: 257 PAVALDG-GLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKL 315
P + LD GL+YV ++ +TP+KVYF GPEI++SNRVVR+Y ++DNFLR+SFVDED KL
Sbjct: 359 PNITLDDDGLVYVYRVQITPAKVYFYGPEINVSNRVVRNYAADLDNFLRISFVDEDCEKL 418
Query: 316 YSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASR 375
ST LS + + N RRT +Y RVLS L NGI IGDK F+ LAFS+SQ R+N+ WMFASR
Sbjct: 419 RSTDLSQRSAPGNNTRRTALYNRVLSVLSNGITIGDKHFDFLAFSSSQLRDNSAWMFASR 478
Query: 376 PELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHV------------------- 416
P L+A+DIRE MG+FR I+NV KYAARLGQSF+SS E L V
Sbjct: 479 PGLSASDIREWMGNFRNIRNVAKYAARLGQSFSSSTETLKVHKYEVKEAPDVTNGTEYVF 538
Query: 417 DSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK------------VTLRNNMFKYK 464
IG ISA+ A+ V+KKC +TPSAFQIRYGGYK ++LR +M K++
Sbjct: 539 SDGIGTISADFADEVSKKCNLTRFTPSAFQIRYGGYKGVVAIDPTSQWKLSLRKSMSKFQ 598
Query: 465 SESTSLDILANSKYQ-----REGVARLR----LDNVFERKQREVVARLDAILTDSSKVQE 515
S++ +LD+LA SKYQ R+ + L +D++FE KQ+E V +L+ ++ + +
Sbjct: 599 SDNITLDVLAYSKYQPCFLNRQLITLLSTLGVIDSIFELKQQEAVQQLNRMVAEPQAAID 658
Query: 516 ALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMM 575
A+ELM E TN++KELL CGY+PD EP++SM+ QTF AS LLEL+TR+RIF+ G+AMM
Sbjct: 659 AIELMPMGEITNIVKELLLCGYRPDVEPYVSMLLQTFRASKLLELKTRSRIFVPKGRAMM 718
Query: 576 GCLDEKGTLEYGQ------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHH 617
GCLDE TL+YGQ G ++VAK PC+HPGD+R+L+AV P L H
Sbjct: 719 GCLDETRTLKYGQVFIQASNSADDRGKSVVTGKVIVAKNPCIHPGDIRILQAVHSPLLGH 778
Query: 618 MVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDV 677
MV+CV+FP G RPH NECSGSD DG+IYFV WD D IP P YTPAP + L DV
Sbjct: 779 MVNCVVFPQLGPRPHPNECSGSDLDGDIYFVSWDPDLIPTRMVAPMDYTPAPTETLDHDV 838
Query: 678 TIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVA 737
IE+V EYF +YIVN+SLGII NAHVV+A + KA S +C L +L SI D+ KTGV
Sbjct: 839 MIEEVHEYFTNYIVNESLGIIANAHVVFADRQSLKAESTQCIKLAELFSIAVDYPKTGVP 898
Query: 738 ATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYD 797
A IP L VK YPDFMEK D+ Y S+ ++G LYRE+ P I+ F K+ A YD
Sbjct: 899 AQIPHELHVKEYPDFMEKLDRATYVSEGVIGKLYREIKKQNPH---IRHFTKDVATLSYD 955
Query: 798 TDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRD 857
TD+ V+G+++ + FK EYD KLGNLM++YGI +EAE++S CI++MAK+F KK D
Sbjct: 956 TDLIVDGYQDYITEAVWFK--EEYDFKLGNLMEHYGINSEAEIISGCILKMAKNFTKKSD 1013
Query: 858 LEAISFSVRSLRKEARAWFNKKKND-SDSSHK 888
+AI +V+SLRKEAR+WF++ +D S HK
Sbjct: 1014 ADAIRLAVKSLRKEARSWFSEMGSDESGDGHK 1045
>gi|40794965|gb|AAR91036.1| RNA-directed RNA polymerase 1 [Hordeum vulgare subsp. vulgare]
Length = 1115
Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/1052 (43%), Positives = 612/1052 (58%), Gaps = 174/1052 (16%)
Query: 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKG----SRAHAIVEFTT-VEA 56
K + + GF S + VK+ LE+ G G V V++ K SR+ AIV+F + A
Sbjct: 3 GKTLQVSGFPSTVNADHVKDLLEQIVGTGNVFAVKLRPPKNISANSRSFAIVQFQSEAHA 62
Query: 57 ADFIKCLARERLSYGNSFLKASSAKRR-TPHFAKRTPHYKLGGDLKLNFGCQISKDKFSV 115
+ + R L G+ +LKA A+R P RT + L G KL+FGC + + SV
Sbjct: 63 SLVLNAAQRNALRSGSHYLKARYAERDIVPR--PRTTIFNLQG-AKLHFGCLLKERVLSV 119
Query: 116 FWSQENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSG------------ 163
WS +VSV+ +++ F L Y S YKLELS ESIW+I+LHRP G
Sbjct: 120 LWSGTDVSVEFGFAMKRIDFCLIYNSKKYKLELSYESIWEIQLHRPPGLQKKFLLIQVQA 179
Query: 164 ---------------------------------------HSVSIGQSSAICLELPSRALI 184
S SIGQS + LELP +
Sbjct: 180 APKIYEQNIRLSGSMYDDPLFNYFRDDTDDQWTRTTDFTPSASIGQSYILSLELPHICYL 239
Query: 185 PKALKDFFHYKESLVQFTLLPGFVFSCNS-----------------------DLNQDG-- 219
P + F +Y+ F L PG+ +S N+ L Q+G
Sbjct: 240 PNIREYFVYYEVHNDIFNLQPGYSYSSNTCFVPVVKSHYFTDVPYEILFKINHLVQNGTL 299
Query: 220 -----------------------KHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTS 256
K ALE + +L++ C +P +WL EQY+K + + TS
Sbjct: 300 SGPTLDDNFYRLVSPGYERIDRIKRALEKMSYLKKTCLNPTNWLSEQYKK-MRRSRVLTS 358
Query: 257 PAVALDG-GLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKL 315
P + LD GL+YV ++ +TP+KVYF GPEI++SNRVVR+Y ++DNFLR+SFVDED KL
Sbjct: 359 PNITLDDDGLVYVYRVQITPAKVYFYGPEINVSNRVVRNYAADLDNFLRISFVDEDCEKL 418
Query: 316 YSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASR 375
ST LS + + N RRT +Y RVLS L NGI IGDK F+ LAFS+SQ R+N+ WMFASR
Sbjct: 419 RSTDLSQRSAPGNNTRRTALYNRVLSVLSNGITIGDKHFDFLAFSSSQLRDNSAWMFASR 478
Query: 376 PELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHV------------------- 416
P L+A+DIRE MG+FR I+NV KYAARLGQSF+SS E L V
Sbjct: 479 PGLSASDIREWMGNFRNIRNVAKYAARLGQSFSSSTETLKVHKYEVKEAPDVTNGTEYVF 538
Query: 417 DSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK------------VTLRNNMFKYK 464
IG ISA+ A+ V+KKC +TPSAFQIRYGGYK ++LR +M K++
Sbjct: 539 SDGIGTISADFADEVSKKCNLTRFTPSAFQIRYGGYKGVVAIDPTSQWKLSLRKSMSKFQ 598
Query: 465 SESTSLDILANSKYQ-----REGVARLR----LDNVFERKQREVVARLDAILTDSSKVQE 515
S++ +LD+LA SKYQ R+ + L +D++FE KQ+E V +L+ ++ + +
Sbjct: 599 SDNITLDVLAYSKYQPCFLNRQLITLLSTLGVIDSIFELKQQEAVQQLNRMVAEPQAAID 658
Query: 516 ALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMM 575
A+ELM E TN++KELL CGY+PD EP++SM+ QTF AS LLEL+TR+RIF+ G+AMM
Sbjct: 659 AIELMPMGEITNIVKELLLCGYRPDVEPYVSMLLQTFRASKLLELKTRSRIFVPKGRAMM 718
Query: 576 GCLDEKGTLEYGQ------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHH 617
GCLDE TL+YGQ G ++VAK PC+HPGD+R+L+AV P L H
Sbjct: 719 GCLDETRTLKYGQVFIQASNSADDRGKSVVTGKVIVAKNPCIHPGDIRILQAVHSPLLGH 778
Query: 618 MVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDV 677
MV+CV+FP G RPH NECSGSD DG+IYFV WD D IP P YTPAP + L DV
Sbjct: 779 MVNCVVFPQLGPRPHPNECSGSDLDGDIYFVSWDPDLIPTRMVAPMDYTPAPTETLDHDV 838
Query: 678 TIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVA 737
IE+V EYF +YIVN+SLGII NAHVV+A + KA S +C L +L SI D+ KTGV
Sbjct: 839 MIEEVHEYFTNYIVNESLGIIANAHVVFADRQSLKAESTQCIKLAELFSIAVDYPKTGVP 898
Query: 738 ATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYD 797
A IP L VK YPDFMEK D+ Y S+ ++G LYRE+ P I+ F K+ A YD
Sbjct: 899 AQIPHELHVKEYPDFMEKLDRATYVSEGVIGKLYREIKKQNPH---IRHFTKDVATLSYD 955
Query: 798 TDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRD 857
TD+ V+G+++ + FK EYD KLGNLM++YGI +EAE++S CI++MAK+F KK D
Sbjct: 956 TDLIVDGYQDYITEAVWFK--EEYDFKLGNLMEHYGINSEAEIISGCILKMAKNFTKKSD 1013
Query: 858 LEAISFSVRSLRKEARAWFNKKKND-SDSSHK 888
+AI +V+SLRKEAR+WF++ +D S HK
Sbjct: 1014 ADAIRLAVKSLRKEARSWFSEMGSDESGDGHK 1045
>gi|40794967|gb|AAR91037.1| RNA-directed RNA polymerase 2 [Hordeum vulgare subsp. vulgare]
Length = 1115
Score = 792 bits (2045), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/1044 (44%), Positives = 609/1044 (58%), Gaps = 170/1044 (16%)
Query: 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKG----SRAHAIVEFTTVEAA 57
K + + GF + + VK+ LE+ G G V V++ K SR+ AIV+F T A
Sbjct: 3 GKTLQVSGFPATVNVHHVKDLLEQIVGLGKVCAVKLRPPKNISANSRSFAIVQFETEAHA 62
Query: 58 DFIKCLAR-ERLSYGNSFLKASSAKRRTPHFAKRTPHYKLGGDLKLNFGCQISKDKFSVF 116
+ AR L G+++LK A+R RT + L D L+FGC + + SV
Sbjct: 63 SLVVNAARGNALRSGSNYLKVRPAERDII-LKPRTALFNLE-DATLHFGCLLRERVLSVL 120
Query: 117 WSQENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSG------------- 163
WS VSV+ ++K F L+Y YKLELS ESIW+I+L+ P G
Sbjct: 121 WSGTGVSVEFGFAMKKIDFCLTYNLKKYKLELSYESIWEIQLYHPPGSQKKFLLIQVMAA 180
Query: 164 ---------HS-----------------------------VSIGQSSAICLELPSRALIP 185
HS SIGQS +CLELP+ +P
Sbjct: 181 PKIYEQNLWHSGSMYDDPLFNYFRDDTDDQWTRTTDFTPLASIGQSYILCLELPADCYLP 240
Query: 186 KALKDFFHYKESLVQFTLLPGFVFSCNS-----------------------DLNQDG--- 219
+ F +YK F + G +S NS +L Q+G
Sbjct: 241 NIREYFVYYKNHNHDFHCMRGHSYSSNSCFVPIVKSQYFTDVPYEILFKINNLVQNGILS 300
Query: 220 ----------------------KHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSP 257
KHALE + +L++ C +P++WL E+Y++ S TSP
Sbjct: 301 GPTLDDNFYSLVSPGYVCIDHIKHALENMSYLKKTCLNPINWLSEKYKEIQISRHMLTSP 360
Query: 258 AVALDG-GLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLY 316
+ALD GL YV ++ +TP+KVYF GPEI++SNRVVR+Y +++NFLR+SFVDED KL
Sbjct: 361 NIALDDDGLAYVYRVQITPAKVYFYGPEINVSNRVVRNYSADLENFLRISFVDEDCEKLR 420
Query: 317 STVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRP 376
ST LSP+ + N RT +Y R+LS L NGI IG+K FE LAFS+SQ R+N+ WMFASR
Sbjct: 421 STDLSPRSAPGNNASRTALYNRILSVLSNGITIGNKHFEFLAFSSSQLRDNSAWMFASRT 480
Query: 377 ELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHV-------------------D 417
L+A+DIRE MG+FR I+NV KYAARLGQSF++S E L V
Sbjct: 481 GLSASDIREWMGNFRNIRNVAKYAARLGQSFSASTETLKVHKYEVQALPEVTNGTKYVFS 540
Query: 418 SNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK------------VTLRNNMFKYKS 465
IG ISA+ A+ V++KC A +TPSAFQIRYGGYK ++LR++M K+ S
Sbjct: 541 DGIGTISADFADEVSRKCKLARFTPSAFQIRYGGYKGVVAIDPRSHWKLSLRSSMSKFPS 600
Query: 466 ESTSLDILANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEA 516
E+ +LD+LA SKYQ R+ + L DN+FE KQ+ V +L+ ++T+ +A
Sbjct: 601 ENITLDVLAYSKYQPCFLNRQLITLLSTLGVRDNIFELKQQAAVMQLNRLVTEPQAAIDA 660
Query: 517 LELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMG 576
+ELM E TNV+KELL CGY+PD EP+LSM+ QTF AS LLEL+T++RIFI G+AMMG
Sbjct: 661 IELMPMGEITNVVKELLLCGYQPDVEPYLSMILQTFRASKLLELKTKSRIFIPEGRAMMG 720
Query: 577 CLDEKGTLEYGQ------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHM 618
CLDE TL+YG+ G +VVAK PCLHPGD+R+L AV P L HM
Sbjct: 721 CLDETRTLKYGEVFIQASNSANESDKFVVTGKVVVAKNPCLHPGDIRILEAVYTPVLDHM 780
Query: 619 VDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVT 678
V+CV+FP +G RPH NECSGSD DG+IYFV WD D IP P YTPAP + L DV
Sbjct: 781 VNCVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPDLIPTRMVAPMDYTPAPTETLDHDVV 840
Query: 679 IEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAA 738
IE+V EYFA+YIVN+SLGII NAHVV+A E KA S +C L +L SI D+ KTGV A
Sbjct: 841 IEEVHEYFANYIVNESLGIIANAHVVFADKESLKAESTQCIKLAELFSIAVDYPKTGVPA 900
Query: 739 TIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDT 798
IPS+L V+ YPDFMEK D+ Y S+ ++G LYRE+ +P I F K+ A + YDT
Sbjct: 901 QIPSKLHVREYPDFMEKLDRATYISKGVIGKLYREIKKQSPH---IGHFTKDVARRSYDT 957
Query: 799 DMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRDL 858
D+ V+G+++ + FK EYD KLGNLM++YGIK+EAE++S CI++MAK+F K D
Sbjct: 958 DLIVDGYQDYITEAVWFK--GEYDFKLGNLMEHYGIKSEAEIISGCILKMAKNFTKSSDA 1015
Query: 859 EAISFSVRSLRKEARAWFNKKKND 882
+AI +V+SLRKEAR+WF+ D
Sbjct: 1016 DAIRLAVKSLRKEARSWFSDMSAD 1039
>gi|197223664|gb|ACH53360.1| RNA-directed RNA polymerase 1a [Hordeum vulgare]
Length = 1114
Score = 791 bits (2043), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/1044 (44%), Positives = 609/1044 (58%), Gaps = 170/1044 (16%)
Query: 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKG----SRAHAIVEFTTVEAA 57
K + + GF + + VK+ LE+ G G V V++ K SR+ AIV+F T A
Sbjct: 3 GKTLQVSGFPATVNVHHVKDLLEQIVGLGKVCAVKLRPPKNISANSRSFAIVQFETEAHA 62
Query: 58 DFIKCLAR-ERLSYGNSFLKASSAKRRTPHFAKRTPHYKLGGDLKLNFGCQISKDKFSVF 116
+ AR L G+++LK A+R RT + L D L+FGC + + SV
Sbjct: 63 SLVVNAARGNALRSGSNYLKVRPAERDII-LKPRTALFNLE-DATLHFGCLLRERVLSVL 120
Query: 117 WSQENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSG------------- 163
WS VSV+ ++K F L+Y YKLELS ESIW+I+L+ P G
Sbjct: 121 WSGTGVSVEFGFAMKKIDFCLTYNLKKYKLELSYESIWEIQLYHPPGSQKKFLLIQVMAA 180
Query: 164 ---------HS-----------------------------VSIGQSSAICLELPSRALIP 185
HS SIGQS +CLELP+ +P
Sbjct: 181 PKIYEQNLWHSGSMYDDPLFNYFRDDTDDQWTRTTDFTPLASIGQSYILCLELPADCYLP 240
Query: 186 KALKDFFHYKESLVQFTLLPGFVFSCNS-----------------------DLNQDG--- 219
+ F +YK F + G +S NS +L Q+G
Sbjct: 241 NIREYFAYYKNHNHDFHCMRGHSYSSNSCFVPIVKSQYFTDVPYEILFKINNLVQNGILS 300
Query: 220 ----------------------KHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSP 257
KHALE + +L++ C +P++WL E+Y++ S TSP
Sbjct: 301 GPTLDDNFYRLVSPGYVCIDHIKHALENMSYLKKTCLNPINWLSEKYKEIQISRHMLTSP 360
Query: 258 AVALDG-GLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLY 316
+ALD GL YV ++ +TP+KVYF GPEI++SNRVVR+Y +++NFLR+SFVDED KL
Sbjct: 361 NIALDDDGLAYVYRVQITPAKVYFYGPEINVSNRVVRNYSADLENFLRISFVDEDCEKLR 420
Query: 317 STVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRP 376
ST LSP+ + N RT +Y R+LS L NGI IG+K FE LAFS+SQ R+N+ WMFASR
Sbjct: 421 STDLSPRYAPGNNASRTALYNRILSVLSNGITIGNKHFEFLAFSSSQLRDNSAWMFASRT 480
Query: 377 ELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHV-------------------D 417
L+A+DIRE MG+FR I+NV KYAARLGQSF++S E L V
Sbjct: 481 GLSASDIREWMGNFRNIRNVAKYAARLGQSFSASTETLKVHKYEVQALPEVTNGTKYVFS 540
Query: 418 SNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK------------VTLRNNMFKYKS 465
IG ISA+ A+ V++KC A +TPSAFQIRYGGYK ++LR++M K+ S
Sbjct: 541 DGIGTISADFADEVSRKCKLARFTPSAFQIRYGGYKGVVAIDPRSHWKLSLRSSMSKFPS 600
Query: 466 ESTSLDILANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEA 516
E+ +LD+LA SKYQ R+ + L DN+FE KQ+ V +L+ ++T+ +A
Sbjct: 601 ENITLDVLAYSKYQPCFLNRQLITLLSTLGVRDNIFELKQQAAVMQLNRLVTEPQAAIDA 660
Query: 517 LELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMG 576
+ELM E TNV+KELL CGY+PD EP+LSM+ QTF AS LLEL+T++RIFI G+AMMG
Sbjct: 661 IELMPMGEITNVVKELLLCGYQPDVEPYLSMILQTFRASKLLELKTKSRIFIPEGRAMMG 720
Query: 577 CLDEKGTLEYGQ------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHM 618
CLDE TL+YG+ G +VVAK PCLHPGD+R+L+AV P L HM
Sbjct: 721 CLDETRTLKYGEVFIQASNSANESDKFVVTGKVVVAKNPCLHPGDIRILKAVYTPVLDHM 780
Query: 619 VDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVT 678
V+CV+FP +G RPH NECSGSD DG+IYFV WD D IP P YTPAP + L DV
Sbjct: 781 VNCVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPDLIPTRMVAPMDYTPAPTETLDHDVV 840
Query: 679 IEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAA 738
IE+V EYFA+YIVN+SLGII NAHVV+A E KA S +C L +L SI D+ KTGV A
Sbjct: 841 IEEVHEYFANYIVNESLGIIANAHVVFADKESLKAESTQCIKLAELFSIAVDYPKTGVPA 900
Query: 739 TIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDT 798
IPS L V+ YPDFMEK D+ Y S+ ++G LYRE+ +P I F K+ A + YDT
Sbjct: 901 QIPSELHVREYPDFMEKLDRATYISKGVIGKLYREIKKQSPH---IGHFTKDVARRSYDT 957
Query: 799 DMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRDL 858
D+ V+G+++ + FK EYD KLGNLM++YGIK+EAE++S CI++MAK+F K D
Sbjct: 958 DLIVDGYQDYITEAVWFK--GEYDFKLGNLMEHYGIKSEAEIISGCILKMAKNFTKSSDA 1015
Query: 859 EAISFSVRSLRKEARAWFNKKKND 882
+AI +V+SLRKEAR+WF+ D
Sbjct: 1016 DAIRLAVKSLRKEARSWFSDMSAD 1039
>gi|449457379|ref|XP_004146426.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|449491619|ref|XP_004158954.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase 1a [Cucumis sativus]
Length = 1130
Score = 790 bits (2039), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/745 (54%), Positives = 512/745 (68%), Gaps = 80/745 (10%)
Query: 220 KHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVY 279
+HALE LFHL+EC YDP ++L EQYRK+ S P SP ++LD GL+YV ++ +TP KV+
Sbjct: 320 EHALEKLFHLKECNYDPSNFLTEQYRKY--SRHPPNSPVISLDDGLVYVRRVQITPCKVF 377
Query: 280 FCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERV 339
FCGPE+++SNRV+R + IDNFLR+SFVDE+ K+ ST L P++SS + + +T IY R+
Sbjct: 378 FCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLPRMSSKSEDGKTDIYRRI 437
Query: 340 LSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKY 399
LS L+NGIVIGDK F+ LAFS+SQ R+N+LWMFAS P++ AA IR MGDFR IKN KY
Sbjct: 438 LSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAYIRAWMGDFRHIKNPAKY 497
Query: 400 AARLGQSFASSREALHVDSN----------------------IGKISAELAETVAKKCGY 437
AARLGQSF SS EAL V SN IGKIS++ A+ VA KCG+
Sbjct: 498 AARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGIGKISSKFAKEVAAKCGF 557
Query: 438 AIYTPSAFQIRYGGY------------KVTLRNNMFKYKSESTSLDILANSKYQREGVAR 485
PSAFQIRYGGY K++LR +M K++S++T LD+L +SKYQ + R
Sbjct: 558 QA-VPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNTKLDVLGHSKYQPCFLNR 616
Query: 486 LRL---------DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNCG 536
+ D +FE+KQ E V +LDAILTD K QEALELMS ENTN+LKE+L CG
Sbjct: 617 QLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELMSPGENTNILKEMLKCG 676
Query: 537 YKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ-------- 588
Y+PD EP+LSMM QTF AS LLELRT++RIFI NG+AMMGCLDE TLEYGQ
Sbjct: 677 YQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDETRTLEYGQVFVQISSG 736
Query: 589 -----------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFP 625
G + VAK PCLHPGD+RVL+AV++P L+HMVDCV+FP
Sbjct: 737 RHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKAVNIPGLYHMVDCVVFP 796
Query: 626 AKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEY 685
KG RPH NECSGSD DG+IYFVCWD + IP Q P YTPAP L RDVT ED++EY
Sbjct: 797 QKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDYTPAPPNELDRDVTTEDIQEY 856
Query: 686 FADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLR 745
F +Y+VNDSLGII NAH +A E KA S+ C +L KL S+ DF KTGV A IPS L
Sbjct: 857 FVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAKLFSVAVDFPKTGVPAIIPSHLY 916
Query: 746 VKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGF 805
VK +PDFMEK D+ YES ++G L+R V IAP+ + I+SF ++ A + YD DMEV GF
Sbjct: 917 VKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHIRSFTRDVARRCYDCDMEVEGF 976
Query: 806 KEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRDLEAISFSV 865
++ D F +++ YD KLGNL+DYYGIK+EAE+LS IM M+KSF ++RD EAI+ +V
Sbjct: 977 EDYVE--DAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIMRMSKSFTRRRDAEAINLAV 1034
Query: 866 RSLRKEARAWFNKKKNDSDSSHKDV 890
RSLRKEAR WFN ++ +DS+ D+
Sbjct: 1035 RSLRKEARTWFNAREG-ADSNSDDL 1058
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 98/168 (58%), Gaps = 4/168 (2%)
Query: 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAAD 58
M K I + GF S + AVK FLE HTG GTV ++V K G R +AIV+FT+ A+
Sbjct: 1 MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
Query: 59 FIKCLARERLSYGNSFLKASSAKRRTPHFAKRTPHYKLGGDLKLNFGCQISKDKFSVFWS 118
I LA +RL YG+S+LKA + + RT Y L +L L FGCQ+S +KF V W
Sbjct: 61 LIISLANQRLWYGSSYLKARATEVDIVP-KPRTYMYTLE-ELLLCFGCQVSTEKFRVLWE 118
Query: 119 QENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSGHSV 166
V +RK F L Y+SV+Y+LELS E IWQI+LH P S+
Sbjct: 119 GNVDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSM 166
>gi|308080205|ref|NP_001183933.1| putative RNA-dependent RNA polymerase [Zea mays]
gi|254838301|gb|ACT83377.1| putative RNA-dependent RNA polymerase [Zea mays]
Length = 1108
Score = 784 bits (2024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/1052 (43%), Positives = 602/1052 (57%), Gaps = 178/1052 (16%)
Query: 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKG----SRAHAIVEFTTVEA 56
+ + I + GFA S + VK FLE G GT+ +++ + SRA AI +F + E+
Sbjct: 2 VGRTIQVQGFALTDSAEPVKLFLERIAGAGTICALKLRHPRNISANSRAFAIAQFQSQES 61
Query: 57 ADFIK-CLARERLSYGNSFLKASSAKRR-TPHFAKRTPHYKLGGDLKLNFGCQISKDKFS 114
A ++ R L G +L+ A R P R P + L D+ L+ GC + ++ S
Sbjct: 62 ASLVENATQRLVLKIGRFYLRTRPADRDIVPR--PRIPMFSLE-DIVLHLGCLVKENILS 118
Query: 115 VFWSQENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSGH---------- 164
+ NVSV+ D++K F+LSY +KLELS ESIW+++LHRP +
Sbjct: 119 ALFRASNVSVQFGFDMKKIYFYLSYNFTKFKLELSYESIWEMQLHRPPAYRSRTQFLLIQ 178
Query: 165 -------------------------------------------SVSIGQSSAICLELPSR 181
S SIGQSS +
Sbjct: 179 VQAAPKIYKLLPGRPGLMFEDPFFNWFRDEKDEQWTRTIDFTPSASIGQSSIYVWRCQQQ 238
Query: 182 ALIPKALKDFFHYKESLVQFTLLPGFVFSCNSDLN-----------------------QD 218
+P+ F +YKE + F G+ +SC S L Q+
Sbjct: 239 CELPRIGDYFVYYKEQNLDFECRNGYSYSCGSSLVPIVKSPDYIEVPYEILFKINHLVQN 298
Query: 219 G-------------------------KHALEMLFHLRECCYDPVSWLREQY---RKHVSS 250
G K AL + +L+ C +P WL QY RK +
Sbjct: 299 GTLSGSTVDHSFFRHVSPKFEPIDHIKRALLKMTYLKSTCLNPTDWLSVQYSRIRKSRHA 358
Query: 251 GQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDE 310
Q ++ ++LD GL+YV+++ VTP+KVYF GPEI++SNRVVR + +IDNFLR+SFVDE
Sbjct: 359 SQKLSN--ISLDDGLVYVHRVQVTPAKVYFYGPEINVSNRVVRHFSADIDNFLRISFVDE 416
Query: 311 DLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLW 370
D KL S LSP+ +S N RRT +Y RVLS L NGI IGDK FE LAFS+SQ R+N+ W
Sbjct: 417 DCEKLRSADLSPRSTSGNDARRTALYNRVLSVLSNGINIGDKHFEFLAFSSSQLRDNSAW 476
Query: 371 MFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN----------- 419
MFASR LTA+DIR+ MGDFR+I+NV KYAA LGQSF+SS E L V +
Sbjct: 477 MFASRQGLTASDIRKWMGDFRDIRNVAKYAAILGQSFSSSTETLKVHKSEVERIPDITNG 536
Query: 420 --------IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK------------VTLRNN 459
+GKISA A VA KC + PS FQIRYGGYK ++LR +
Sbjct: 537 TKYIFSDGVGKISANFAVEVAMKCKLKRFAPSVFQIRYGGYKGVVAVDTRSNHKLSLRKS 596
Query: 460 MFKYKSESTSLDILANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDS 510
M K++SE+ +LD+LA SKYQ R+ + L DNVFE KQ+E + +L+ ++T+
Sbjct: 597 MSKFQSENITLDVLAYSKYQPCFLNRQLITLLSTLGVSDNVFELKQKEALRQLNRMVTEP 656
Query: 511 SKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQN 570
+EA+ELM E TNV+KELL+CGY+PD EP+LSM+ QTF AS LLEL+T++RIFI
Sbjct: 657 QAAREAVELMPMGEVTNVVKELLSCGYQPDHEPYLSMLLQTFRASKLLELKTKSRIFITQ 716
Query: 571 GQAMMGCLDEKGTLEYGQGLMVVA------------------KKPCLHPGDMRVLRAVDV 612
G+AMMGCLDE TL+YGQ + + K PCLHPGD+RVL+AVDV
Sbjct: 717 GRAMMGCLDETCTLKYGQVFVQASYSADDHRKVVVTGKVVVAKNPCLHPGDIRVLQAVDV 776
Query: 613 PALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKI 672
PALHH+ DCV+FP +G RPH NECSGSD DG+IYFV WD IP P YTPA +
Sbjct: 777 PALHHLFDCVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPHLIPSRLVDPMDYTPASAET 836
Query: 673 LARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFS 732
L DVTIE+++EYF +YIVN+SLGII NAHVV+ E KA S C L KL SI DF
Sbjct: 837 LDHDVTIEEIQEYFTNYIVNESLGIIANAHVVFTDQERMKAESPPCVQLAKLFSIAVDFP 896
Query: 733 KTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGA 792
KTGV A IP L VK YPDFMEK DK YES+ ++G LYRE+ P IK F +E A
Sbjct: 897 KTGVPALIPHELHVKEYPDFMEKLDKVTYESKGVIGKLYREIKKHTPH---IKHFTREVA 953
Query: 793 MQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSF 852
+ YDTD+ V+G+++ + +++ EYD +LGNLMD+YGIK+EAE++S CI++MAK+F
Sbjct: 954 RRSYDTDLIVDGYEDYITE--AIEFKEEYDFRLGNLMDHYGIKSEAEIISGCILKMAKNF 1011
Query: 853 DKKRDLEAISFSVRSLRKEARAWFNKKKNDSD 884
K D +AI +VRSLRKEAR+WFN+ D
Sbjct: 1012 TKSSDADAIRMAVRSLRKEARSWFNEMSTGED 1043
>gi|142942403|gb|ABO92978.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 935
Score = 776 bits (2004), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/889 (49%), Positives = 525/889 (59%), Gaps = 173/889 (19%)
Query: 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKG-SRAHAIVEFTTVEAADF 59
M K I +YGF L S + VK FLE+HTG GTV +EV Q+KG SRA A V+F +AD
Sbjct: 1 MGKTIQVYGFPRLLSAEVVKSFLEKHTGYGTVCALEVKQSKGGSRAFAKVQFVDNISADK 60
Query: 60 IKCLARERLSYGNSFLKASSAKRRTPHFAKRTPHYKLGGDLKLNFGCQISKDKFSVFWSQ 119
I LA +RL +G+S+LKA + H + LNFGCQIS DKF+V S
Sbjct: 61 IINLASKRLYFGSSYLKAWELETDIVQLWAYVDHMD---GITLNFGCQISDDKFAVLGST 117
Query: 120 ENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSGHSVS------------ 167
E VS+K L+ F FFLS S DYKL+LS E+IWQ+ LHRP G +
Sbjct: 118 E-VSIKFGIGLKNFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRI 176
Query: 168 ------------------------------IGQSSAICLELPSRALIPKALKDFFHYKES 197
IG SS++CL+ +P + FFHY E
Sbjct: 177 YKRLENSCYSFFKETPDDQWVRTTDFTPSWIGLSSSLCLQFRRGVHLPNFQESFFHYAER 236
Query: 198 LVQFTLLPGFVFSCN-------------------------SDLNQDG------------- 219
TL GF F + S L Q G
Sbjct: 237 ENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFR 296
Query: 220 ------------KHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIY 267
+ ALE L++L+ECCYDPV WL EQY + Q P SP++ LD GL+Y
Sbjct: 297 LVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYFKGRQPPKSPSITLDDGLVY 356
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
V ++LVTP KVYFCGPE+++SNRV+R+Y ++IDNFLR+SFVDE+ KLYST L P+ S+
Sbjct: 357 VRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTG 416
Query: 328 NGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERM 387
NG RT IYER+LSTLR G VIGDKKFE LAFS+SQ R+N++WMFASR LTA DIR M
Sbjct: 417 NG-IRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRRGLTANDIRSWM 475
Query: 388 GDFREIKNVTKYAARLGQSFASSREALHV--------------------DSNIGKISAEL 427
GDF +IKNV KYAAR GQSF SSRE L V IGKISA+
Sbjct: 476 GDFSQIKNVAKYAARFGQSFGSSRETLSVLRHEIEVIPDVKVHGTSYVFSDGIGKISADF 535
Query: 428 AETVAKKCGYAIYTPSAFQIRYGGYK------------VTLRNNMFKYKSESTSLDILAN 475
A VA CG YTPSAFQIRYGGYK ++LR +M KY+S++ LD+L
Sbjct: 536 ARKVASNCGLQ-YTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLEW 594
Query: 476 SKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENT 526
SKYQ R+ V L D+V E+KQ+E V +LDAIL DS K QEALELMS ENT
Sbjct: 595 SKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENT 654
Query: 527 NVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEY 586
N+LK +LNCGY PDAEPFLSMM QTF AS LL+LRT++RIFI NG+AMMGCLDE TLEY
Sbjct: 655 NILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEY 714
Query: 587 GQ---------------------------------GLMVVAKKPCLHPGDMRVLRAVDVP 613
GQ G +VVAK PCLHPGD+RVLRAVDVP
Sbjct: 715 GQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVP 774
Query: 614 ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKIL 673
ALHHMVDCV+FP KG+RPH NECSGSD DG+IYFVCWD D IPP Q Q + P P L
Sbjct: 775 ALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEFPPPPSIQL 834
Query: 674 ARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLV 722
DVTIE+VEEYF +YIVND LGII NAHVV+A EPD AMSN +L+
Sbjct: 835 DHDVTIEEVEEYFTNYIVNDGLGIIANAHVVFADREPDMAMSNHAKNLL 883
>gi|307135834|gb|ADN33705.1| RNA-dependent RNA polymerase [Cucumis melo subsp. melo]
Length = 1137
Score = 756 bits (1952), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/836 (49%), Positives = 525/836 (62%), Gaps = 115/836 (13%)
Query: 165 SVSIGQSSAICLELPSRALIPKALKDFFHYKESLVQFTLLPGFVFSCNSDLN-------- 216
S IGQS +CL+ +P + YK + F L G F NS+L
Sbjct: 234 SSCIGQSFTLCLQFSPSHHLPPFFQTLVGYKVTYDPFILRKGSSFVSNSNLVPIITPPQA 293
Query: 217 ---------------QDG-------------------------KHALEMLFHLRECCYDP 236
Q G +HALE LF+L+ECCY P
Sbjct: 294 FDISYKILFKINALLQRGYLSGPTLDDEFFRLVDSSRFHPDYIEHALEKLFNLKECCYKP 353
Query: 237 VSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYP 296
WL++QY + S Q P P V+LD GL+YV+++ +TP KVYFCGPE +LSNRVVR +
Sbjct: 354 QKWLKDQYLSYYVSNQLPWKPNVSLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFI 413
Query: 297 DEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFET 356
D+IDNFLR+SFVDE+L KL+S L+P+ SS RTR+Y+RV+S L+NGIVIGDKKFE
Sbjct: 414 DDIDNFLRVSFVDEELDKLHSIDLAPRSSSPENNTRTRVYDRVVSVLKNGIVIGDKKFEF 473
Query: 357 LAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHV 416
LAFS SQ REN+ WMFASR L+AADIRE MGDFR+I+NV KYAARLGQSF SSR+ L V
Sbjct: 474 LAFSASQLRENSFWMFASRKGLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCV 533
Query: 417 DSN----------------------IGKISAELAETVAKKCGYAIYTPSAFQIRYGGY-- 452
+ IGKIS LA+ VAKKCG +TPSAFQIRY GY
Sbjct: 534 KEHEIEVIPDVEVERKNIMYCFSDGIGKISKTLAKKVAKKCGLTGHTPSAFQIRYAGYKG 593
Query: 453 ----------KVTLRNNMFKYKSESTSLDILANSKYQ-----REGVARLRL----DNVFE 493
K++LR +M KY S T LD+L SKYQ R+ + L D+VF
Sbjct: 594 VVAIDPTSEKKLSLRKSMLKYMSLDTQLDVLLWSKYQPCFLNRQVINLLSTLGIGDDVFV 653
Query: 494 RKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFH 553
+KQ+E + +LD+IL D S+ E LELMS E T++LKELL+ Y P+ EPFL+MM TF
Sbjct: 654 KKQKEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLSF-YMPNEEPFLNMMLWTFR 712
Query: 554 ASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQGLM-------------------VVA 594
A+ LL+L+T++RIF+ G+ MMGCLDE TLEYGQ + VVA
Sbjct: 713 ANKLLDLKTKSRIFVPRGRTMMGCLDETRTLEYGQVFVHCSVPGRSSEGNFVVKGKVVVA 772
Query: 595 KKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDR 654
K PCLHPGD+R+L A+DV ALHHMVDCV+FP KG+RPH NECSGSD DG++YFVCWD +
Sbjct: 773 KNPCLHPGDVRLLDAIDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDSEL 832
Query: 655 IPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAM 714
Q +P +Y PAP L DVTIE+V++YFA+Y+VND LG I NAH V+A KAM
Sbjct: 833 TCIKQVKPMSYEPAPSIQLDHDVTIEEVQKYFANYMVNDGLGAIANAHTVFADKNSKKAM 892
Query: 715 SNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREV 774
S C L KL SI DF KTGV A +P LRV YPDFM+K DK Y S ++G L+R V
Sbjct: 893 SAECIKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPDKPTYVSNGVLGKLFRGV 952
Query: 775 NGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGI 834
++ T + F KE A + YD DMEV+GF++ + F Y+T+YD KLGNLMDYYGI
Sbjct: 953 KDVSSDVNTFEIFTKEVATKCYDPDMEVDGFEKYLRE--AFDYKTKYDFKLGNLMDYYGI 1010
Query: 835 KTEAEMLSRCIMEMAKSFDKKRDLEAISFSVRSLRKEARAWFNKKKNDSDSSHKDV 890
KTE E++S I++MAKSFDK+ DLE I+F+++SLRKE R+WFN +N+S +++D+
Sbjct: 1011 KTEPELVSGNILKMAKSFDKRNDLEQIAFAMKSLRKEVRSWFN--ENESKYTYEDI 1064
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 88/167 (52%), Gaps = 9/167 (5%)
Query: 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAH---AIVEFTTVEAA 57
M K I +YGF + VKEFLE HTG+GTVS V + + K + V F + AA
Sbjct: 1 MEKTIEIYGFGPKVTVDEVKEFLENHTGDGTVSTVRISKPKDDKTRFTSVTVRFKSKLAA 60
Query: 58 DFIKCLA---RERLSYGNSFLKASSAKRRTPHFAKRTPHYKLGGDLKLNFGCQISKDKFS 114
++I A ++L + +S+LKA +++ P + D+K G ISKDK
Sbjct: 61 EYIVAKATTEEKKLWFESSYLKAREVEKKA---TSGGPEMERMEDVKGQLGSMISKDKMR 117
Query: 115 VFWSQENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRP 161
V W E +V+ + +RK F+LSYE DYK+EL E+I +E P
Sbjct: 118 VIWEGEKWNVEFGNGVRKLWFYLSYEVDDYKMELCFENILSVEFRCP 164
>gi|142942513|gb|ABO93004.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 841
Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/847 (49%), Positives = 499/847 (58%), Gaps = 173/847 (20%)
Query: 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKG-SRAHAIVEFTTVEAADF 59
M K I +YGF L S + VK FLE+HTG GTV +EV Q+KG SRA A V+F +AD
Sbjct: 1 MGKTIQVYGFPYLLSAEVVKSFLEKHTGYGTVCALEVKQSKGGSRAFAKVQFVDNISADK 60
Query: 60 IKCLARERLSYGNSFLKASSAKRRTPHFAKRTPHYKLGGDLKLNFGCQISKDKFSVFWSQ 119
I LA +RL +G+S+LKA K H + LNFGCQIS DKF+V S
Sbjct: 61 IINLASKRLYFGSSYLKAWEMKTDIVQLRAYVDHMD---GITLNFGCQISDDKFAVLGST 117
Query: 120 ENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSGHSVS------------ 167
E VS+K L+KF FFLS S DYKL+LS E+IWQ+ LHRP G +
Sbjct: 118 E-VSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRI 176
Query: 168 ------------------------------IGQSSAICLELPSRALIPKALKDFFHYKES 197
IG SS++CL+ +P + FFHY E
Sbjct: 177 YKRLENSCYSFFKETPDDQWVRTTDFAPSWIGLSSSLCLQFRRGVHLPNFQESFFHYTER 236
Query: 198 LVQFTLLPGFVFSCN-------------------------SDLNQDG------------- 219
TL GF F + S L Q G
Sbjct: 237 ENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFR 296
Query: 220 ------------KHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIY 267
+ ALE L++L+ECCYDPV WL EQY ++ Q P SP++ LD GL+Y
Sbjct: 297 LVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVY 356
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
V ++LVTP KVYFCGPE+++SNRV+R+Y ++IDNFLR+SFVDE+ KLYST L P+ S+
Sbjct: 357 VRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTG 416
Query: 328 NGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERM 387
NG RT IYER+LSTLR G VIGDKKFE LAFS+SQ R+N++WMFASRP LTA DIR M
Sbjct: 417 NG-IRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWM 475
Query: 388 GDFREIKNVTKYAARLGQSFASSREALHV--------------------DSNIGKISAEL 427
GDF +IKNV KYAARLGQSF SS+E L V IGKISA+
Sbjct: 476 GDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEVIPDVKVHGTSYVFSDGIGKISADF 535
Query: 428 AETVAKKCGYAIYTPSAFQIRYGGYK------------VTLRNNMFKYKSESTSLDILAN 475
A VA KCG YTPSAFQIRYGGYK ++LR +M KY+S++ LD+L
Sbjct: 536 ARRVASKCGLQ-YTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGW 594
Query: 476 SKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENT 526
SKYQ R+ V L D+V E+KQ+E V +LDAIL DS K QEALELMS ENT
Sbjct: 595 SKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENT 654
Query: 527 NVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEY 586
N+LK +LNCGY PDAEPFLSMM QTF AS LL+LRTR+RIFI NG+AMMGCLDE TLEY
Sbjct: 655 NILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEY 714
Query: 587 GQ---------------------------------GLMVVAKKPCLHPGDMRVLRAVDVP 613
GQ G +VVAK PCLHPGD+RVLRAVDVP
Sbjct: 715 GQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVP 774
Query: 614 ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKIL 673
ALHHMVDCV+FP KG+RPH NECSGSD DG+IYFVCWD D IPP Q QP Y PAP L
Sbjct: 775 ALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQL 834
Query: 674 ARDVTIE 680
DVTIE
Sbjct: 835 DHDVTIE 841
>gi|413938756|gb|AFW73307.1| putative RNA-dependent RNA polymerase [Zea mays]
Length = 933
Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/829 (48%), Positives = 520/829 (62%), Gaps = 116/829 (13%)
Query: 165 SVSIGQSSAICLELPSRALIPKALKDFFHYKESLVQFTLLPGFVFSCNSDLN-------- 216
S SIGQSS +CLE+P + +P+ F +YKE + F G+ +SC S+L
Sbjct: 47 SASIGQSSILCLEVPQQCELPRIGDYFVYYKEQNLDFECRNGYSYSCGSNLVPIVKSPDY 106
Query: 217 ---------------QDG-------------------------KHALEMLFHLRECCYDP 236
Q+G K AL + +L+ C +P
Sbjct: 107 IEVPYEILFKINHLVQNGTLSGPTVDHSFFRHVSPKFEPIDHIKRALLKMTYLKSTCLNP 166
Query: 237 VSWLREQY---RKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVR 293
WL QY RK + Q ++ ++LD GL+YV+++ VTP+KVYF GPEI++SNRVVR
Sbjct: 167 TDWLSVQYSRIRKSRHASQKLSN--ISLDDGLVYVHRVQVTPAKVYFYGPEINVSNRVVR 224
Query: 294 SYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKK 353
+ +IDNFLR+SFVDED KL S LSP+ +S N RRT +Y RVLS L NGI IGDK
Sbjct: 225 HFSADIDNFLRISFVDEDCEKLRSADLSPRSTSGNDARRTALYNRVLSVLSNGINIGDKH 284
Query: 354 FETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREA 413
FE LAFS+SQ R+N+ WMFASR LTA+DIR+ MGDFR+I+NV KYAARLGQSF+SS E
Sbjct: 285 FEFLAFSSSQLRDNSAWMFASRQGLTASDIRKWMGDFRDIRNVAKYAARLGQSFSSSTET 344
Query: 414 LHVDSN-------------------IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK- 453
L V + +GKISA A VA KC + PS FQIRYGGYK
Sbjct: 345 LKVHKSEVERIPDITNGTKYIFSDGVGKISANFAVEVAMKCKLKRFAPSVFQIRYGGYKG 404
Query: 454 -----------VTLRNNMFKYKSESTSLDILANSKYQ-----REGVARLRL----DNVFE 493
++LR +M K++SE+ +LD+LA SKYQ R+ + L DNVFE
Sbjct: 405 VVAVDTRSNHKLSLRKSMSKFQSENITLDVLAYSKYQPCFLNRQLITLLSTLGVSDNVFE 464
Query: 494 RKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFH 553
KQ+E + +L+ ++T+ +EA+ELM E TNV+KELL+CGY+PD EP+LSM+ QTF
Sbjct: 465 LKQKEALRQLNRMVTEPQAAREAVELMPMGEVTNVVKELLSCGYQPDHEPYLSMLLQTFR 524
Query: 554 ASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQGLMVVA------------------K 595
AS LLEL+T++RIFI G+AMMGCLDE TL+YGQ + + K
Sbjct: 525 ASKLLELKTKSRIFITQGRAMMGCLDETCTLKYGQVFVQASYSADDHRKVVVTGKVVVAK 584
Query: 596 KPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRI 655
PCLHPGD+RVL+AVDVPALHH+ DCV+FP +G RPH NECSGSD DG+IYFV WD I
Sbjct: 585 NPCLHPGDIRVLQAVDVPALHHLFDCVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPHLI 644
Query: 656 PPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMS 715
P P YTPA + L DVTIE+++EYF +YIVN+SLGII NAHVV+A E KA S
Sbjct: 645 PSRLVDPMDYTPASAETLDHDVTIEEIQEYFTNYIVNESLGIIANAHVVFADQERMKAES 704
Query: 716 NRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVN 775
C L KL SI DF KTGV A IP L VK YPDFMEK DK YES+ ++G LYRE+
Sbjct: 705 PPCVQLAKLFSIAVDFPKTGVPALIPHELHVKEYPDFMEKLDKVTYESKGVIGKLYREIK 764
Query: 776 GIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIK 835
P IK F +E A + YDTD+ V+G+++ + +++ EYD +LGNLMD+YGIK
Sbjct: 765 KHTPH---IKHFTREVARRSYDTDLIVDGYEDYITE--AIEFKEEYDFRLGNLMDHYGIK 819
Query: 836 TEAEMLSRCIMEMAKSFDKKRDLEAISFSVRSLRKEARAWFNKKKNDSD 884
+EAE++S CI++MAK+F K D +AI +VRSLRKEAR+WFN+ D
Sbjct: 820 SEAEIISGCILKMAKNFTKSSDADAIRMAVRSLRKEARSWFNEMSTGED 868
>gi|125541045|gb|EAY87440.1| hypothetical protein OsI_08849 [Oryza sativa Indica Group]
Length = 1067
Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/1035 (43%), Positives = 582/1035 (56%), Gaps = 184/1035 (17%)
Query: 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKG----SRAHAIVEFTTVEAA 57
K + + GFA S VK+ LE G G V V++ K SRA+AIV+F T E A
Sbjct: 3 VKTLQVSGFALDDSADYVKDLLERIVGCGNVYAVKLRHPKNVTATSRAYAIVQFQTEEHA 62
Query: 58 DFIKCLA-RERLSYGNSFLKASSAKRR-TPHFAKRTPHYKLGGDLKLNFGCQISKDKFSV 115
+K A R+ L G+ +LK + R P R +KL D+ L+FGC + + S
Sbjct: 63 SLVKNAAQRKILRRGHYYLKVHPSDRDIVPR--PRVSMFKLE-DVTLHFGCLLKETILSA 119
Query: 116 FWSQENVSVKLCSDLRKFGFFLSY--ESVDYKLELSNESIWQIELHRP------------ 161
WS+ VSV+ +L+K F+L S++YKLELS ESIW+I+L RP
Sbjct: 120 LWSRTGVSVEFGFNLKKIYFYLQLPNSSIEYKLELSYESIWEIQLQRPPKSQTKFLLIQV 179
Query: 162 -------------SG--------------------------HSVSIGQSSAICLELPSRA 182
SG S SIGQS +CLE+P R
Sbjct: 180 QAAPKIYEQTPRRSGVMYEDPLFNYFRDHTDDQWTRTTDFTSSSSIGQSYILCLEVPRRC 239
Query: 183 LIPKALKDFFHYKESLVQFTLLPG-----------------------FVFSCNSDLNQDG 219
+P FF+Y E F G +F N L Q+G
Sbjct: 240 DLPNIRDYFFYYHEYNHDFECRSGGYPYSSDTRFVPIVKSRGYVPYEILFKINH-LVQNG 298
Query: 220 -------------------------KHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFP 254
K ALEM+ +L++ C +P SWL EQY K S
Sbjct: 299 TLSGPTVDDSFFRLVSPAFVPIDHIKRALEMMSYLKKTCLNPTSWLSEQYSKFRRSRYVQ 358
Query: 255 TSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGK 314
SP ++LD GL+YV ++ VTP+KVYF GPEI++SNRVVR++ +I+NFLR+SFVDED K
Sbjct: 359 PSPNISLDDGLVYVYRVQVTPAKVYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEK 418
Query: 315 LYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFAS 374
L +T LSP+ +S + RT +Y+RVL L +GI IG K FE LAFS+SQ R+N+ WMFAS
Sbjct: 419 LRATDLSPRSASGHDANRTALYKRVLLVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFAS 478
Query: 375 RPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREAL------------------HV 416
R L A+DIR MGDFR I+NV KYAARLGQSF+SS E L HV
Sbjct: 479 RQGLAASDIRTWMGDFRNIRNVAKYAARLGQSFSSSTETLKVQKYEVEEISDIKNGTQHV 538
Query: 417 DSN-IGKISAELAETVAKKCGYAIYTPSAFQIRYGGY------------KVTLRNNMFKY 463
S+ IGKIS+ A VA KC + PSAFQIRYGGY K++LR +M K+
Sbjct: 539 FSDGIGKISSAFANEVAMKCNLKRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKF 598
Query: 464 KSESTSLDILANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQ 514
+S++ ++D+LA SKYQ R+ + L D+VFE+KQ E V +L+ ++TD
Sbjct: 599 QSDNITVDVLAYSKYQPGFLNRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAI 658
Query: 515 EALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAM 574
EA+ELM E TN +KELL CGY+PD EP+LSM+ QTF AS LLEL+T++RI I G+AM
Sbjct: 659 EAIELMPMGEITNAVKELLLCGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAM 718
Query: 575 MGCLDEKGTLEYGQGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTN 634
MGCLDE TL+YGQ +R V+ +RPH N
Sbjct: 719 MGCLDETRTLKYGQVF-------------IRATSGVN---------------DNDRPHPN 750
Query: 635 ECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDS 694
ECSGSD DG+IYFV WD IPP P YTPAP + L DVTIE+VEEYF +YIVN+S
Sbjct: 751 ECSGSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPTETLDHDVTIEEVEEYFTNYIVNES 810
Query: 695 LGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFME 754
LG+I NAHVV+A E KA S+ C +L KL SI DF KTGV A IP L VK YPDFME
Sbjct: 811 LGMIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPALIPPELHVKEYPDFME 870
Query: 755 KQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDG 814
K DK YES+ ++G LYRE+ P IK F +E A + YDTDM V+G+++ +
Sbjct: 871 KLDKVTYESKGVIGKLYREIKKHTPH---IKHFTREVARRSYDTDMIVDGYEDYITE--A 925
Query: 815 FKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRDLEAISFSVRSLRKEARA 874
+ EYD KLGNLMD+YGIK+EAE++S CI++MAK+F KK D +AI +VRSLRKEAR+
Sbjct: 926 MALKDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSDADAIRLAVRSLRKEARS 985
Query: 875 WFNKKKNDSDSSHKD 889
F++ D + D
Sbjct: 986 RFSEMSLDDNGHGHD 1000
>gi|113205325|gb|AAT38751.2| RNA-directed RNA polymerase, putative [Solanum demissum]
Length = 1180
Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/813 (49%), Positives = 480/813 (59%), Gaps = 139/813 (17%)
Query: 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKG-SRAHAIVEFTTVEAADF 59
M K I +YGF L S + VK FLE+HTG GTV +EV Q+KG SRA A V+F +AD
Sbjct: 1 MGKTIQVYGFPYLLSAEVVKSFLEKHTGYGTVCALEVKQSKGGSRAFAKVQFVDNISADK 60
Query: 60 IKCLARERLSYGNSFLKASSAKRRTPHFAKRTPHYKLGGDLKLNFGCQISKDKFSVFWSQ 119
I LA +RL +G+S+LKA K H H + LNFGCQIS DKF+V S
Sbjct: 61 IINLASKRLYFGSSYLKAWEMKTDIVHLRAYVDHMD---GITLNFGCQISDDKFAVLGST 117
Query: 120 ENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSGHSVS--------IGQS 171
E V + +F + + L N S + P V IG S
Sbjct: 118 EVVLHRPYGQNAQFLLIQLFGAPRIYKRLEN-SCYSFFKETPDDQWVRTTDFAPSWIGLS 176
Query: 172 SAICLELPSRALIPKALKDFFHYKESLVQFTLLPGFVFSCN------------------- 212
S++CL+ +P + FFHY E TL GF F +
Sbjct: 177 SSLCLQFRRGVHLPNFQEIFFHYTERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPY 236
Query: 213 ------SDLNQDG-------------------------KHALEMLFHLRECCYDPVSWLR 241
S L Q G + ALE L++L+ECCYDPV WL
Sbjct: 237 KILFKISSLVQHGCIPGPALDVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLT 296
Query: 242 EQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDN 301
EQY ++ Q P SP++ LD GL+YV ++LVTP KVYFCGPE+++SNRV+R+Y ++IDN
Sbjct: 297 EQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDN 356
Query: 302 FLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSN 361
FLR+SFVDE+ KLYST L P+ S+ NG RT IYER+LSTLR G VIGDKKFE LAFS+
Sbjct: 357 FLRVSFVDEEWEKLYSTDLLPKASTGNG-IRTNIYERILSTLRKGFVIGDKKFEFLAFSS 415
Query: 362 SQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHV----- 416
SQ R+N++WMFASRP LTA DIR MGDF +IKNV KYAARLGQSF SS+E L V
Sbjct: 416 SQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEI 475
Query: 417 ---------------DSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK-------- 453
IGKISA+ A VA KCG YTPSAFQIRYGGYK
Sbjct: 476 EVIPDVKVHGTSYVFSDGIGKISADFARRVASKCGLQ-YTPSAFQIRYGGYKGVVAVDPY 534
Query: 454 ----VTLRNNMFKYKSESTSLDILANSKYQ-----REGVARLRL----DNVFERKQREVV 500
++LR +M KY+S++ LD+L SKYQ R+ V L D+V E+KQ+E V
Sbjct: 535 SSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAV 594
Query: 501 ARLDAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLEL 560
+LDAIL DS K QEALELMS ENTN+LK +LNCGY PDAEPFLSMM QTF AS LL+L
Sbjct: 595 DQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDL 654
Query: 561 RTRARIFIQNGQAMMGCLDEKGTLEYGQ-------------------------------- 588
RTR+RIFI NG+AMMGCLDE TLEYGQ
Sbjct: 655 RTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFIL 714
Query: 589 -GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYF 647
G +VVAK PCLHPGD+RVLRAVDVPALHHMVDCV+FP KG+RPH NECSGSD DG+IYF
Sbjct: 715 KGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYF 774
Query: 648 VCWDHDRIPPLQFQPTAYTPAPEKILARDVTIE 680
VCWD D IPP Q QP Y PAP L DVTIE
Sbjct: 775 VCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIE 807
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 121/206 (58%), Positives = 157/206 (76%), Gaps = 3/206 (1%)
Query: 679 IEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAA 738
+++VEEYF +YIVNDSLGII NAHVV+A EPD AMS+ C L +L SI DF KTGV A
Sbjct: 906 LQEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPA 965
Query: 739 TIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDT 798
IPS+LR K YPDFM+K DKT Y S+ ++G L+R+V AP ++I F ++ A + YD
Sbjct: 966 EIPSQLRPKEYPDFMDKPDKTTYISERVIGKLFRKVKDKAPQASSIAIFTRDVARRSYDA 1025
Query: 799 DMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRDL 858
D+EV+GF++ + F Y+TEYDNKLGNLMDYYGIKTEAE+LS IM+ +K+FD+++D
Sbjct: 1026 DLEVDGFEDYIDE--AFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKDA 1083
Query: 859 EAISFSVRSLRKEARAWFNKKKNDSD 884
EAIS +VR+LRKEAR WF K++ND D
Sbjct: 1084 EAISVAVRALRKEARTWF-KRRNDID 1108
>gi|222623633|gb|EEE57765.1| hypothetical protein OsJ_08301 [Oryza sativa Japonica Group]
Length = 1027
Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/995 (43%), Positives = 567/995 (56%), Gaps = 144/995 (14%)
Query: 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKG----SRAHAIVEFTTVEAA 57
K + + GFA S VK+ LE G G V V++ K SRA+AIV+F T E A
Sbjct: 3 VKTLQVSGFALDDSADYVKDLLERIVGCGNVYAVKLRHPKNVTATSRAYAIVQFQTEEHA 62
Query: 58 DFIKCLA-RERLSYGNSFLKASSAKRR-TPHFAKRTPHYKLGGDLKLNFGCQISKDKFSV 115
+K A R+ L G+ +LK + R P R +KL D+ L+FGC + + S
Sbjct: 63 SLVKNAAQRKILRRGHYYLKVHPSDRDIVPR--PRVSMFKLE-DVTLHFGCLLKETILSA 119
Query: 116 FWSQENVSVKLCSDLRKFGFFLSY--ESVDYKLELSNESIWQIELHRP------------ 161
WS++ VSV+ +L+K F+L S++YKLELS+ESIW+I+L RP
Sbjct: 120 LWSRKGVSVEFGFNLKKIYFYLQLPNSSIEYKLELSHESIWEIQLQRPPKSQTKFLLIQV 179
Query: 162 -------------SG--------------------------HSVSIGQSSAICLELPSRA 182
SG S SIGQS +CLE+P R
Sbjct: 180 QAAPKIYEQTPRRSGVMYEDPLFNYFRDHTDDQWTRTTDFTSSSSIGQSYILCLEVPRRC 239
Query: 183 LIPKALKDFFHYKESLVQFTLLPG-FVFSCNSD----LNQDGKHALEMLF---HLRECCY 234
+P FF+Y E F G + +S ++ + G E+LF HL +
Sbjct: 240 DLPNIRDYFFYYHEYNHDFECRSGGYPYSSDTRFVPIVKSRGYVPYEILFKINHLVQNGT 299
Query: 235 DPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRS 294
+ + + + VS P + Y+ K + P+ +YF GPEI++SNRVVR+
Sbjct: 300 LSGPTVDDSFFRLVSPAFVPIDHIKRALEMMSYLKKTCLNPT-MYFYGPEINVSNRVVRN 358
Query: 295 YPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKF 354
+ +I+NFLR+SFVDED KL +T LSP+ +S + RT +Y+RVLS L +GI IG K F
Sbjct: 359 FSSDIENFLRISFVDEDCEKLRATDLSPRSASGHDANRTALYKRVLSVLSDGITIGGKNF 418
Query: 355 ETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREAL 414
E LAFS+SQ R+N+ WMFASR L A+DIR MGDFR I+NV KYAARLGQSF+SS E L
Sbjct: 419 EFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRNVAKYAARLGQSFSSSTETL 478
Query: 415 ------------------HVDSN-IGKISAELAETVAKKCGYAIYTPSAFQIRYGGY--- 452
HV S+ IGKIS+ A VA KC + PSAFQIRYGGY
Sbjct: 479 KVQKYEVEEISDIKNGTQHVFSDGIGKISSAFANEVAMKCNLKRFAPSAFQIRYGGYKGV 538
Query: 453 ---------KVTLRNNMFKYKSESTSLDILANSKYQ-----REGVARLRL----DNVFER 494
K++LR +M K++S++ ++D+LA SKYQ R+ + L D+VFE+
Sbjct: 539 VAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQPGFLNRQLITLLSTLGVRDSVFEQ 598
Query: 495 KQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHA 554
KQ E V +L+ ++TD EA+ELM E TN +KELL CGY+PD EP+LSM+ QTF A
Sbjct: 599 KQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKELLLCGYQPDDEPYLSMLLQTFRA 658
Query: 555 SNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQGLMVVAKKPCLHPGDMRVLRAVDVPA 614
S LLEL+T++RI I G+AMMGCLDE TL+YGQ +R V+
Sbjct: 659 SKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVF-------------IRATSGVN--- 702
Query: 615 LHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILA 674
+RPH NECSGSD DG+IYFV WD IPP P YTPAP + L
Sbjct: 703 ------------DNDRPHPNECSGSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPTETLD 750
Query: 675 RDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKT 734
DVTIE+VEEYF +YIVN+SLG+I NAHVV+A E KA S+ C +L KL SI DF KT
Sbjct: 751 HDVTIEEVEEYFTNYIVNESLGMIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKT 810
Query: 735 GVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQ 794
GV A IP L VK YPDFMEK DK YES+ ++G LYRE+ P IK F +E A +
Sbjct: 811 GVPALIPPELHVKEYPDFMEKLDKVTYESKGVIGKLYREIKKHTPH---IKHFTREVARR 867
Query: 795 FYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDK 854
YDTDM V+G+++ + + EYD KLGNLMD+YGIK+EAE++S CI++MAK+F K
Sbjct: 868 SYDTDMIVDGYEDYITE--AMALKDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTK 925
Query: 855 KRDLEAISFSVRSLRKEARAWFNKKKNDSDSSHKD 889
K D +AI +VRSLRKEAR+ F++ D + D
Sbjct: 926 KSDADAIRLAVRSLRKEARSRFSEMSLDDNGHGHD 960
>gi|297737620|emb|CBI26821.3| unnamed protein product [Vitis vinifera]
Length = 943
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/973 (42%), Positives = 560/973 (57%), Gaps = 172/973 (17%)
Query: 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKG--SRAHAIVEFTTVEAAD 58
M K I +YG S S +KEFLE++TGEGT+ +E+ Q K S HA V+FT++ A+
Sbjct: 1 MGKTIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIKQPKSGVSMTHAKVQFTSLRLAE 60
Query: 59 FIKCLARERLSYGNSFLKASS------AKRRT-PHFAKRTPHYKLGGDLKLNFGCQISKD 111
I LA++ L YG ++LKA K RT H R + L+FG Q+S +
Sbjct: 61 LIISLAKQ-LWYGGNYLKAREMDLDIIPKPRTFLHSMDR---------ITLHFGYQMSNE 110
Query: 112 KFSVFWSQENV-SVKLCSDLRKFGFFLSYESVD----YKLELSNESI--------WQIEL 158
+F + S EN+ ++L + FL + +D Y+ ++S S W E+
Sbjct: 111 RFCL--SCENIWQIQLREPRGQNTKFLLIQLLDAPQIYEKDVSALSYFKETPDDQWVREI 168
Query: 159 HRPSGHSVSIGQSSAICLELPSRALIPKALKDFFHYKESLVQFTLLPGFVFSCN------ 212
S SIGQSSA+CLELP + +P ++F YKE+ +F L G FS N
Sbjct: 169 DFTP--SCSIGQSSALCLELPHGSQLPNFCENFARYKENDRKFILESGASFSGNLHLVPI 226
Query: 213 -----------------SDLNQDG-------------------------KHALEMLFHLR 230
+ L Q+G +HALE L++L
Sbjct: 227 VGPPQGSNLPFKILFKINTLVQNGCLSGPTLDTNFFRWVDPQRINISFIEHALEKLYYLE 286
Query: 231 ECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNR 290
ECCY+PV WL EQYR ++S Q SPA++LD GL+YV ++ +TP KVYFCGPE+++SNR
Sbjct: 287 ECCYEPVRWLHEQYRTYISK-QVAGSPAISLDTGLVYVRRVQITPCKVYFCGPEVNVSNR 345
Query: 291 VVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIG 350
V+R+YP++IDNFLR+SF+DE+ K++STV+SP++S N RRT +Y R+LS L+NGIVIG
Sbjct: 346 VLRNYPEDIDNFLRVSFLDENSEKIHSTVISPRMS--NEGRRTGVYRRILSILQNGIVIG 403
Query: 351 DKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASS 410
DKKF+ LA S+SQ R+N+ WMFASRP LTAADIR RMGDF +I+
Sbjct: 404 DKKFDFLAVSSSQLRDNSAWMFASRPGLTAADIRSRMGDFSQIR---------------- 447
Query: 411 REALHVDSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYKVTLRNNMFKYKSESTSL 470
N+ K +A L ++ + K TL K +
Sbjct: 448 --------NVAKYAARLGQS------------------FSSSKETL-------KVAKHEI 474
Query: 471 DILANSKYQREGVARLRLDNVFERKQREVVARLDAILTDSSKVQEALELMSSAEN-TNVL 529
+I+ + + R+G VF D I S+++ + + +N T
Sbjct: 475 EIIPDIETHRDGTTY-----VFS----------DGIGKISAELAHRVAIKCGCKNSTPSA 519
Query: 530 KELLNCGYK------PDAEPFLSMMPQTFHAS------NLLELRTRARIFIQNGQAMMGC 577
++ GYK P + LS+ F +LLELRT+ RIF+ NG G
Sbjct: 520 FQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESENTNLDLLELRTKTRIFVPNGS---GS 576
Query: 578 LDEKGTLEYGQGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECS 637
+ LE G +VVAK PCLHPGD+R+L AVDVPALHHMVDCV+FP KG RPH +ECS
Sbjct: 577 HHDNFILE---GKVVVAKNPCLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECS 633
Query: 638 GSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGI 697
GSD DG+IYFVCWDHD IPP Q P YTPAP K+L DV IE+VEEYF +YI ND LGI
Sbjct: 634 GSDLDGDIYFVCWDHDLIPPRQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGI 693
Query: 698 ICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQD 757
I NAH V+A E DKA+ C +L KL SI +F KTGV A IP L VK YPDFMEK +
Sbjct: 694 IANAHTVFADKEYDKALCPPCKELAKLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKAN 753
Query: 758 KTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKY 817
K YESQ ++G L+REV +AP ++SF ++ AMQ YD DMEV+GF++ D F Y
Sbjct: 754 KPTYESQSVIGKLFREVKDVAPHNYDVRSFTRDVAMQSYDADMEVDGFEDYVR--DAFYY 811
Query: 818 RTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRDLEAISFSVRSLRKEARAWFN 877
+++YD KLG+LMD GI+TE+E+LS IM+M+KSFDK++D EAI+ +VRSLRKEAR WFN
Sbjct: 812 KSQYDFKLGSLMDCCGIRTESEILSGSIMKMSKSFDKRKDAEAIALAVRSLRKEARTWFN 871
Query: 878 KKKNDSDSSHKDV 890
K + + + DV
Sbjct: 872 KMGSGTYAGADDV 884
>gi|251765121|sp|Q0DXS3.2|RDR1_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 1; Short=OsRDR1
Length = 740
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/672 (53%), Positives = 451/672 (67%), Gaps = 63/672 (9%)
Query: 276 SKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRI 335
S VYF GPEI++SNRVVR++ +I+NFLR+SFVDED KL +T LSP+ +S + RT +
Sbjct: 7 STVYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASGHDANRTAL 66
Query: 336 YERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKN 395
Y+RVLS L +GI IG K FE LAFS+SQ R+N+ WMFASR L A+DIR MGDFR I+N
Sbjct: 67 YKRVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRN 126
Query: 396 VTKYAARLGQSFASSREAL------------------HVDSN-IGKISAELAETVAKKCG 436
V KYAARLGQSF+SS E L HV S+ IGKIS+ A VA KC
Sbjct: 127 VAKYAARLGQSFSSSTETLKVQKYEVEEISDIKNGTQHVFSDGIGKISSAFANEVAMKCN 186
Query: 437 YAIYTPSAFQIRYGGYK------------VTLRNNMFKYKSESTSLDILANSKYQ----- 479
+ PSAFQIRYGGYK ++LR +M K++S++ ++D+LA SKYQ
Sbjct: 187 LKRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQPGFLN 246
Query: 480 REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNC 535
R+ + L D+VFE+KQ E V +L+ ++TD EA+ELM E TN +KELL C
Sbjct: 247 RQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKELLLC 306
Query: 536 GYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ------- 588
GY+PD EP+LSM+ QTF AS LLEL+T++RI I G+AMMGCLDE TL+YGQ
Sbjct: 307 GYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIRATS 366
Query: 589 -----------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECS 637
G +V+AK PCLHPGD+R+L AVDVP LHHM +CV+FP +G RPH NECS
Sbjct: 367 GVNDNDRFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHMFNCVVFPQQGPRPHPNECS 426
Query: 638 GSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGI 697
GSD DG+IYFV WD IPP P YTPAP + L DVTIE+VEEYF +YIVN+SLG+
Sbjct: 427 GSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPTETLDHDVTIEEVEEYFTNYIVNESLGM 486
Query: 698 ICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQD 757
I NAHVV+A E KA S+ C +L KL SI DF KTGV A IP L VK YPDFMEK D
Sbjct: 487 IANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPALIPPELHVKEYPDFMEKLD 546
Query: 758 KTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKY 817
K YES+ ++G LYRE+ P IK F +E A + YDTDM V+G+++ +
Sbjct: 547 KVTYESKGVIGKLYREIKKHTPH---IKHFTREVARRSYDTDMIVDGYEDYITE--AMAL 601
Query: 818 RTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRDLEAISFSVRSLRKEARAWFN 877
+ EYD KLGNLMD+YGIK+EAE++S CI++MAK+F KK D +AI +VRSLRKEAR+ F+
Sbjct: 602 KDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSDADAIRLAVRSLRKEARSRFS 661
Query: 878 KKKNDSDSSHKD 889
+ D + D
Sbjct: 662 EMSLDDNGHGHD 673
>gi|147860348|emb|CAN82568.1| hypothetical protein VITISV_040047 [Vitis vinifera]
Length = 697
Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/596 (56%), Positives = 404/596 (67%), Gaps = 78/596 (13%)
Query: 371 MFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHV-------------- 416
MFASRP LTAADIR RMGDF +I+NV KYAARLGQSF+SS+E L V
Sbjct: 1 MFASRPGLTAADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIEIH 60
Query: 417 --------DSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK------------VTL 456
IGKISAELA VA KCG TPSAFQIRYGGYK ++L
Sbjct: 61 RDGTTYVFSDGIGKISAELAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSL 120
Query: 457 RNNMFKYKSESTSLDILANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAIL 507
R +MFKY+SE+T+LD+L+ SKY+ R+ + L D+VFE+KQRE V +LD IL
Sbjct: 121 RKSMFKYESENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTIL 180
Query: 508 TDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIF 567
D + QEALELMS ENTN+LKE+L CGYKPDAEPFLSMM QTF A+ LLELRT+ RIF
Sbjct: 181 KDPLRAQEALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIF 240
Query: 568 IQNGQAMMGCLDEKGTLEYGQ---------------------------------GLMVVA 594
+ NG++MMGCLDE TLEYG+ G +VVA
Sbjct: 241 VPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHDNFILEGKVVVA 300
Query: 595 KKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDR 654
K PCLHPGD+R+L AVDVPALHHMVDCV+FP KG RPH +ECSGSD DG+IYFVCWDHD
Sbjct: 301 KNPCLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDL 360
Query: 655 IPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAM 714
IPP Q P YTPAP K+L DV IE+VEEYF +YI ND LGII NAH V+A E DKA+
Sbjct: 361 IPPRQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKEYDKAL 420
Query: 715 SNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREV 774
C +L KL SI +F KTGV A IP L VK YPDFMEK +K YESQ ++G L+REV
Sbjct: 421 CPPCKELAKLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREV 480
Query: 775 NGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGI 834
+AP I+SF ++ AMQ YD DMEV+GF++ D F Y+++YD KLG+LMD YGI
Sbjct: 481 KDVAPHNYDIRSFTRDVAMQSYDADMEVDGFEDYVR--DAFYYKSQYDFKLGSLMDCYGI 538
Query: 835 KTEAEMLSRCIMEMAKSFDKKRDLEAISFSVRSLRKEARAWFNKKKNDSDSSHKDV 890
+TE+E+LS +M+M+KSFDK++D EAI+ +VRSLRKEAR WFNK + + + DV
Sbjct: 539 RTESEILSGSLMKMSKSFDKRKDAEAIALAVRSLRKEARTWFNKMGSGTYAGADDV 594
>gi|147853646|emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]
Length = 654
Score = 635 bits (1639), Expect = e-179, Method: Compositional matrix adjust.
Identities = 336/596 (56%), Positives = 395/596 (66%), Gaps = 87/596 (14%)
Query: 371 MFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN----------- 419
MFASRP LTAA+IR MGDF +I+NV KYAARLGQSF+SS+E L V +
Sbjct: 1 MFASRPGLTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIH 60
Query: 420 -----------IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK------------VTL 456
IGKIS +LA VA KCG TPSAFQIRYGGYK ++L
Sbjct: 61 KXRTTYVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSL 120
Query: 457 RNNMFKYKSESTSLDILANSKYQREGVARLRL---------DNVFERKQREVVARLDAIL 507
R +MFKY+S++T+LD+LA SKYQ + R + D+VFE+KQR V +LD IL
Sbjct: 121 RKSMFKYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTIL 180
Query: 508 TDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIF 567
D QEALELMS ENTNVLKE+L CGYKPDAEPFLSMM QTF A+ LLELRT+ RIF
Sbjct: 181 KDPVAAQEALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIF 240
Query: 568 IQNGQAMMGCLDEKGTLEYGQ---------------------------------GLMVVA 594
+ NG++MMGCLDE TLEYG+ G +VVA
Sbjct: 241 VPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGSHHDNFILEGKIVVA 300
Query: 595 KKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDR 654
K PCLHPGD+RVL AV+VP LHHMVDCV+FP KG+RPH NECSGSD DG+IYFVCWD D
Sbjct: 301 KNPCLHPGDVRVLXAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDL 360
Query: 655 IPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAM 714
IPP Q P YTPAP K +VEEYF +YIVNDSLGII NAH V+A E DKA
Sbjct: 361 IPPQQINPMDYTPAPTK---------EVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAY 411
Query: 715 SNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREV 774
+ C +L KL SI DF KTGV A IP LRVK YPDFMEK DK YESQ ++G L+REV
Sbjct: 412 CDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREV 471
Query: 775 NGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGI 834
IAP I+SF ++ A Q YD DMEV GF++ D F Y++EYD KLGNLMDYYGI
Sbjct: 472 KDIAPHNCNIRSFTRDVARQSYDPDMEVVGFEDYVS--DAFYYKSEYDYKLGNLMDYYGI 529
Query: 835 KTEAEMLSRCIMEMAKSFDKKRDLEAISFSVRSLRKEARAWFNKKKNDSDSSHKDV 890
KTE+E+LS IM M+KSFD+++D EAI +V+SLRKEAR WFNK +++DS DV
Sbjct: 530 KTESEILSGSIMRMSKSFDRRKDAEAIGLAVKSLRKEARTWFNKMGSETDSEADDV 585
>gi|119370382|gb|ABL68088.1| putative RNA-directed RNA polymerase 1 [Nicotiana attenuata]
Length = 1044
Score = 585 bits (1509), Expect = e-164, Method: Compositional matrix adjust.
Identities = 359/786 (45%), Positives = 442/786 (56%), Gaps = 183/786 (23%)
Query: 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSR-AHAIVEFTTVEAADF 59
M K I ++GF L S +AVK FLE HTG GTV +EV Q+KG R A A V+F ++A+
Sbjct: 1 MGKTIQVFGFPYLLSAEAVKTFLENHTGNGTVYALEVKQSKGGRRAFAKVQFANNKSAEL 60
Query: 60 IKCLARERLSYGNSFLKASSAKRRTPHFAKRTPHYKLGGDLKLNFGCQISKDKFSVFWSQ 119
I LA E L YG S+L+A K T RT + G + LNFGCQIS KF+V S+
Sbjct: 61 IMDLASEGLYYGPSYLQAWEMK--TDIVQPRTYVQHMDG-VTLNFGCQISDKKFAVLGSK 117
Query: 120 ENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSGHSVS------------ 167
+ VS+K L+K FFLSY S DYKL+LS E+IWQ+ LH P G
Sbjct: 118 D-VSIKFGIGLKKIYFFLSYGSTDYKLQLSYENIWQVVLHCPYGQKAQFLLLQLFGAPRI 176
Query: 168 ------------------------------IGQSSAICLELPSRALIPKALKDFFHYKES 197
IG SS++CLE + +P FF+YKES
Sbjct: 177 HKRLEDSCNSFFKETPDDQWVRTTDFTPSWIGLSSSLCLEFHNGVRLPNFSGSFFYYKES 236
Query: 198 -----------------------------------------LVQFTLLPGFVFSCNSDLN 216
L+Q PG + N
Sbjct: 237 GPSYFTDWFTFSFVQKLSLVPIVHLPEGVELPYKILFKISSLIQHGCFPGLALNFNFFQL 296
Query: 217 QDGK--------HALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYV 268
D + HALE L++L+ECCYDPV WL EQY +++ Q P SP++ LD GL+YV
Sbjct: 297 VDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKHRQLPKSPSITLDDGLVYV 356
Query: 269 NKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTN 328
++LVTP KVYFCGPE+++SNRV+R+Y ++IDNFLR+SFVDE+ K++ST L P+ S+ N
Sbjct: 357 RRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKIHSTDLLPRASTGN 416
Query: 329 GERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMG 388
G RT IY R+LSTLRNG VIGDKKFE LAFS+SQ R+N++WMFASRP LTA DIR MG
Sbjct: 417 G-IRTDIYLRILSTLRNGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMG 475
Query: 389 DFREIKNVTKYAARLGQSFASSREALHVDSN----------------------IGKISAE 426
DFR+I+NV KYAARLGQSF SSRE L V + IGKISA+
Sbjct: 476 DFRQIRNVAKYAARLGQSFGSSRETLSVSRHEVEVIPDVVCSLHGTNYIFSDGIGKISAD 535
Query: 427 LAETVAKKCGYAIYTPSAFQIRYGGY------------KVTLRNNMFKYKSESTSLDILA 474
A+ + Y+I+ F IRYGGY K++LRN+M KY+S + LD+L
Sbjct: 536 FAKM--RPSVYSIF----FSIRYGGYKGVVAVDPYSSMKLSLRNSMLKYESNNIKLDVLG 589
Query: 475 NSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEALELMSSAEN 525
SKYQ R+ V L D+VFE+KQ E V +LDAIL DS K QEALELMS EN
Sbjct: 590 WSKYQPCYLNRQLVTLLSTLGVKDDVFEQKQNEAVDQLDAILHDSLKAQEALELMSPGEN 649
Query: 526 TNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLE 585
TN+LKE+LNCGY PDAEPFLSMM QTF AS LL+LRTR+RIFI A + LE
Sbjct: 650 TNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIAKWDAWL----NPEPLE 705
Query: 586 YGQ---------------------------------GLMVVAKKPCLHPGDMRVLRAVDV 612
YGQ G +VVAK PCLHPGD+RVLRAVDV
Sbjct: 706 YGQVFVQFTGTGRRQFYEESHPFNDSGSTNCNFTLEGNVVVAKNPCLHPGDIRVLRAVDV 765
Query: 613 PALHHM 618
PALHHM
Sbjct: 766 PALHHM 771
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 112/204 (54%), Positives = 142/204 (69%), Gaps = 2/204 (0%)
Query: 681 DVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATI 740
+V EYF +YIVN SLGII NAHVV+A EP AMS C L +L SI F KTGV A I
Sbjct: 772 EVGEYFTNYIVNGSLGIIANAHVVFADREPAMAMSAPCKQLAQLFSIAVAFPKTGVPAGI 831
Query: 741 PSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDM 800
PS+LR YPDFMEK DK Y S+ ++G L+R+V P T+I +F + A + Y DM
Sbjct: 832 PSQLRPTDYPDFMEKPDKPTYHSEKVIGKLFRKVKDKTPQATSIATFTMDVARKSYAGDM 891
Query: 801 EVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRDLEA 860
VNGF++ + F Y++EYDNKLGNLMDYYGIKTEAE+LS +M+ +K+FD+++D EA
Sbjct: 892 IVNGFEDYTDE--AFYYKSEYDNKLGNLMDYYGIKTEAEILSGGVMKASKTFDRRKDAEA 949
Query: 861 ISFSVRSLRKEARAWFNKKKNDSD 884
I +VRSLRKEAR WF K+ + D
Sbjct: 950 IGVAVRSLRKEARTWFKKRSDIDD 973
>gi|4375829|emb|CAA09894.1| RNA-directed RNA polymerase [Arabidopsis thaliana]
Length = 513
Score = 550 bits (1417), Expect = e-153, Method: Compositional matrix adjust.
Identities = 293/515 (56%), Positives = 346/515 (67%), Gaps = 63/515 (12%)
Query: 383 IRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN----------------------I 420
IR MGDF I+NV KYAARLGQSF+SSRE L+V S+ I
Sbjct: 1 IRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVFSDGI 60
Query: 421 GKISAELAETVAKKCGYAIYTPSAFQIRYGGYK------------VTLRNNMFKYKSEST 468
GKISAE A VA+KCG ++PSAFQIRYGGYK ++LR +M K++SE+T
Sbjct: 61 GKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFESENT 120
Query: 469 SLDILANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEALEL 519
LD+LA SKYQ R+ + L D+VFE+KQREVV RLDAILT + EAL L
Sbjct: 121 KLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHEALGL 180
Query: 520 MSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLD 579
M+ ENTN+LK L+ CGYKPDAEPFLSMM Q F AS LLELRT+ RIFI G++MMGCLD
Sbjct: 181 MAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCLD 240
Query: 580 EKGTLEYGQ------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDC 621
E TLEYGQ G +VVAK PCLH GD+RVL+AV+VPAL+HMVDC
Sbjct: 241 ETRTLEYGQVVVQYSDPMRPGRRFIITGPVVVAKNPCLHSGDVRVLQAVNVPALNHMVDC 300
Query: 622 VLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIED 681
V+FP KG RPH NECSGSD DG+IYFVCWD + +PP +P YTP P +IL DVTIE+
Sbjct: 301 VVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDYTPEPTQILDHDVTIEE 360
Query: 682 VEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIP 741
VEEYFA+YIVNDSLGII NAH +A EP KA S+ C +L K S DF KTGVAA IP
Sbjct: 361 VEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFSTAVDFPKTGVAAVIP 420
Query: 742 SRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDME 801
L VK YPDFMEK DK YES++++G L+REV AP +IKSF + A + YD DME
Sbjct: 421 QHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVASKSYDKDME 480
Query: 802 VNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKT 836
V+GF+E + F + YD KLGNLMDYYGIKT
Sbjct: 481 VDGFEEYVDE--AFYQKANYDFKLGNLMDYYGIKT 513
>gi|113205403|gb|ABI34378.1| RNA-directed RNA polymerase, putative [Solanum tuberosum]
Length = 1050
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 299/587 (50%), Positives = 359/587 (61%), Gaps = 126/587 (21%)
Query: 168 IGQSSAICLELPSRALIPKALKDFFHYKESLVQFTLLPGFVFSCN--------------- 212
IG SS++CL+ +P + FFHY E TL GF F +
Sbjct: 55 IGLSSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTGFTFFISQKSALVPNVQPPEGI 114
Query: 213 ----------SDLNQDG-------------------------KHALEMLFHLRECCYDPV 237
S L Q G + ALE L++L+ECCYDPV
Sbjct: 115 AIPYKILFKISSLVQHGCIPGPSLNVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPV 174
Query: 238 SWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPD 297
WL EQY ++ Q P SP++ LD GL+YV ++LVTP KVYFCGPE+++SNRV+R+Y +
Sbjct: 175 RWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSE 234
Query: 298 EIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETL 357
+IDNFLR+SFVDE+ KLYST L P+ S+ NG RT IYER+LSTLR G VIGDKKFE L
Sbjct: 235 DIDNFLRVSFVDEEWEKLYSTELLPKASTGNG-IRTNIYERILSTLRKGFVIGDKKFEFL 293
Query: 358 AFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHV- 416
AFS+SQ R+N++WMFASRP LTA DIR MGDF +IKNV KYAARLGQSF SS E L V
Sbjct: 294 AFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSTETLSVL 353
Query: 417 -------------------DSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK---- 453
IGKISA+ A VA KCG YTPSAFQIRYGGYK
Sbjct: 354 RHEIEVIPDVKVHGTSYVFSDGIGKISADFARRVASKCGLQ-YTPSAFQIRYGGYKGVVA 412
Query: 454 --------VTLRNNMFKYKSESTSLDILANSKYQ-----REGVARLRL----DNVFERKQ 496
++LR +M KY+S++ LD+L SKYQ R+ + L D++ E+KQ
Sbjct: 413 VDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCFLNRQLITLLSTLGVKDDILEQKQ 472
Query: 497 REVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASN 556
+E V +LDAIL DS K QEALELMS ENTN+LK +LNCGY PDAEPFLSMM QTF AS
Sbjct: 473 KEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASK 532
Query: 557 LLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ---------------------------- 588
LL+LRT++RIFI NG+AMMGCLDE TLEYGQ
Sbjct: 533 LLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNC 592
Query: 589 -----GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGER 630
G +VVAK PCLHPGD+RVLRAV+VPALHHMVDCV+FP KG+R
Sbjct: 593 NFILKGNVVVAKNPCLHPGDIRVLRAVNVPALHHMVDCVVFPQKGKR 639
Score = 299 bits (766), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 162/313 (51%), Positives = 203/313 (64%), Gaps = 35/313 (11%)
Query: 598 CLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPP 657
CL ++ V A +P+ D L+ G PH NECSGSD DG+IYFVCWD D IPP
Sbjct: 675 CLPTSEVEVKSAYTLPS----SDSTLWYLTG--PHPNECSGSDLDGDIYFVCWDPDMIPP 728
Query: 658 LQFQPTAYTPAPEKILARDVTIE-------------------------DVEEYFADYIVN 692
Q QP Y PAP L DVTIE +VEEYF +YIVN
Sbjct: 729 RQVQPMEYPPAPSIQLDHDVTIERGDWPVCATTVQVLRNSFSPVCLLQEVEEYFTNYIVN 788
Query: 693 DSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDF 752
DSLGII NAHVV+A EPD AMS+ C L +L SI DF KTGV A IPS+LR K YPDF
Sbjct: 789 DSLGIISNAHVVFADREPDMAMSDPCKKLAELCSIAVDFPKTGVPAEIPSQLRPKEYPDF 848
Query: 753 MEKQ-DKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQ 811
M+K DKT Y S+ ++G L+R+V AP ++ F ++ A + YD D+EV+GF++ +
Sbjct: 849 MDKPPDKTTYISERVIGKLFRKVKDKAPQASSTAIFTRDVARRSYDADLEVDGFEDYIDE 908
Query: 812 FDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRDLEAISFSVRSLRKE 871
F Y+TEYDNKLGNLM+YYGIKTEAE+LS IM+ +K+FD+++D EAIS +VR+LRKE
Sbjct: 909 --AFDYKTEYDNKLGNLMEYYGIKTEAEILSGGIMKTSKTFDRRKDAEAISIAVRALRKE 966
Query: 872 ARAWFNKKKNDSD 884
AR WF K++ND D
Sbjct: 967 ARTWF-KRRNDID 978
>gi|168044164|ref|XP_001774552.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
gi|162674107|gb|EDQ60620.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
Length = 843
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 310/759 (40%), Positives = 427/759 (56%), Gaps = 97/759 (12%)
Query: 216 NQDGKHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTP 275
++ K LE L C+DPV ++E+ + P S ++ L G+ +V ++LVTP
Sbjct: 33 HEQAKLVLERLGKRVGPCWDPVKEIQEELGNMKETLSSPRSVSIKLASGMTWVRRVLVTP 92
Query: 276 SKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLS-PQISSTNG---ER 331
+KVY GPE+ SNRV R + D F+R+SFVDE+L L S LS P+
Sbjct: 93 TKVYCTGPEVDTSNRVTRQFASHSDRFMRMSFVDENLEPLSSVALSVPRRGGAQDGVDAE 152
Query: 332 RTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFR 391
R+ +Y RVL TL+ GIVIGD KFE LAFS+SQ RE+++WMFAS +LTA IR MGDF
Sbjct: 153 RSLLYNRVLKTLKEGIVIGDHKFEFLAFSSSQLREHSVWMFASYAQLTATMIRAWMGDFL 212
Query: 392 EIKNVTKYAARLGQSFASSREALHV------------------------DSNIGKISAEL 427
I+NV K AAR+GQ F+SS+ L V IGKIS E
Sbjct: 213 TIRNVAKCAARMGQCFSSSKPTLEVPEQEVEQIPDIEREDEFGMSKYCFSDGIGKISKEF 272
Query: 428 AETVAKKCGYAIYTPSAFQIRYGGY------------KVTLRNNMFKYKSESTSLDILAN 475
A+ VAK+ + PSAFQIRYGGY K++LR +M K+ S+ LDILA+
Sbjct: 273 AKEVAKRLQMEV-VPSAFQIRYGGYKGVVAVDPHSDFKISLRPSMRKFASKHVGLDILAS 331
Query: 476 SKY-----QREGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENT 526
S++ R+ + L D+VFE+ Q +V+ L+ +L D ++ L++ + E
Sbjct: 332 SRFLPSYLNRQIILLLSTLGIEDSVFEQMQHRMVSELNDMLKDGDVARDMLQINHAGEMH 391
Query: 527 NVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEY 586
L ++L GY+P EPF+ M+ + F AS L++LR R+RI G+ +MGCLDE +L Y
Sbjct: 392 TRLIDMLAAGYQPQTEPFVKMLLEAFRASQLVDLRKRSRILEPKGRVLMGCLDETKSLSY 451
Query: 587 GQ----------------------------------------GLMVVAKKPCLHPGDMRV 606
G+ G ++VAK PCLHPGD+R
Sbjct: 452 GEIFLQVTPALGRRKGLRDGLETFDSYPIGSAANQNIAYVVTGWVIVAKNPCLHPGDIRK 511
Query: 607 LRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYT 666
L+AVD P L HMVDC++FP KG RPH NECSGSD DG++YFV WD D IP +P YT
Sbjct: 512 LKAVDGPGLRHMVDCLVFPQKGHRPHPNECSGSDLDGDLYFVSWDEDLIPLNTDEPMDYT 571
Query: 667 PAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSS 726
L VTIE+++E+F Y+V DSLG+I NAHVV A EP A S C +L KL S
Sbjct: 572 SPGAMTLDHHVTIEEIQEFFVKYMVTDSLGVISNAHVVNADIEPAMARSTACQELAKLVS 631
Query: 727 IVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKS 786
+ DF KTGV A IP LR YPDFMEK DK Y+S+ ++G L+R+V + +
Sbjct: 632 LAVDFPKTGVPAIIPQNLRPTKYPDFMEKGDKETYKSERVLGKLFRQVKDASLEKLPCE- 690
Query: 787 FAKEGAMQFYDTDMEVNGFKEVAMQFDGFKY-RTEYDNKLGNLMDYYGIKTEAEMLSRCI 845
+E + +D M + G++E D K+ + EYD KL LM+ YGI+TEAE +S +
Sbjct: 691 IPREDIERAFDPVMVITGYEEF---IDMAKFHKNEYDRKLIGLMNQYGIETEAEAVSGYM 747
Query: 846 MEMAKSFDKKRD--LEAISFSVRSLRKEARAWFNKKKND 882
+ +A+ + K+R+ +E I +VRSL EAR F++ +D
Sbjct: 748 LNLARQYVKRREDVVERIRDAVRSLINEARQRFDENADD 786
>gi|302786286|ref|XP_002974914.1| hypothetical protein SELMODRAFT_150191 [Selaginella moellendorffii]
gi|300157073|gb|EFJ23699.1| hypothetical protein SELMODRAFT_150191 [Selaginella moellendorffii]
Length = 834
Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust.
Identities = 291/723 (40%), Positives = 411/723 (56%), Gaps = 77/723 (10%)
Query: 222 ALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFC 281
AL L + C +P S +R Y + + + AVA D IYV ++LVTP KVYF
Sbjct: 68 ALSNLERCEKTCLNPASQIR-NYMRTSNRRRERYLGAVAADESQIYVKRLLVTPLKVYFL 126
Query: 282 GPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLS 341
GPE+ SNRV R + ++DNFLR++FVDED L S VLS S+ G +T +Y R+L+
Sbjct: 127 GPELEESNRVTRHFSHKLDNFLRVTFVDEDFDSLNSYVLS----SSRGRTKTEVYYRLLA 182
Query: 342 TLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAA 401
LR GI + K F+ LAFS SQ REN+LWMFA E+T IR+ MGDF I+NV K AA
Sbjct: 183 ILRLGIKLCGKDFQFLAFSASQLRENSLWMFADDDEVTGEYIRQWMGDFLSIRNVAKCAA 242
Query: 402 RLGQSFASSREALHV-----------------------DSNIGKISAELAETVAKKCGYA 438
R+GQSF++S L V IG IS E A VA++C A
Sbjct: 243 RMGQSFSTSTRTLDVPRGEVRQLSDVETFTMDGHKYCFSDGIGTISREFATRVARRC-RA 301
Query: 439 IYTPSAFQIRYGGYK------------VTLRNNMFKYKSESTSLDILANSKY-----QRE 481
PSAFQIRYGGYK ++LR +M K+ SE T+LD+L ++Y RE
Sbjct: 302 STVPSAFQIRYGGYKGVVAVDPASCFKLSLRPSMSKFPSEQTTLDVLEKTRYIPSYLNRE 361
Query: 482 GVARLRL----DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNCGY 537
++ L D VFER Q V LD +L DS+ + L ++ + E +L ++ G+
Sbjct: 362 IISLLSTLEVPDGVFERMQAHQVELLDRMLLDSAATYDVLRVLYAGECHKLLVSMVLAGF 421
Query: 538 KPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ--------- 588
P EP++ + Q F A+ LL L ++RIF+ G+ +MGCLDE+ L YGQ
Sbjct: 422 SPVTEPYMRSLLQAFRAAQLLSLEKKSRIFVPKGRLLMGCLDEQRVLRYGQCFVQVSPLQ 481
Query: 589 -----------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECS 637
G +VVAK PCLHPGD+ VL AVDVP LHHMVDC++FP +G RPH NECS
Sbjct: 482 VTARNQAFVVTGSVVVAKNPCLHPGDVLVLEAVDVPELHHMVDCIVFPQQGPRPHPNECS 541
Query: 638 GSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGI 697
GSD DG+ YFV WD IPP + P Y P L V +E+++E+F ++I +DSLG+
Sbjct: 542 GSDLDGDQYFVSWDSALIPPKRHPPMNYEAPPAVELDHSVRLEEIQEFFVNWITSDSLGV 601
Query: 698 ICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQD 757
I +AH+ + +A +C +L +L S+ DF KTGV A +P LR + YPDFMEK++
Sbjct: 602 IAHAHLALSDWSDLQARDPKCMELARLYSVAVDFPKTGVPAVMPPELRPEQYPDFMEKRN 661
Query: 758 KTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKY 817
K Y S ++G LYR + T T ++ Q YD + V G++ + FK
Sbjct: 662 KRTYISTRVIGKLYRSIRESHRDTNTSPLVSERSFDQQYDRALVVQGYQSHLEEAKFFK- 720
Query: 818 RTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRDLEAIS---FSVRSLRKEARA 874
YD+KL +++++Y + +EAE++S + +A+ + ++R +A++ + ++L KEAR
Sbjct: 721 -ECYDSKLTSILNHYKV-SEAEIMSGSVRSLAR-YSRRRQGDAMARVVLAAKALVKEARG 777
Query: 875 WFN 877
WF+
Sbjct: 778 WFD 780
>gi|326522592|dbj|BAK07758.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 597
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 261/502 (51%), Positives = 339/502 (67%), Gaps = 44/502 (8%)
Query: 420 IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK------------VTLRNNMFKYKSES 467
IG ISA+ A+ V++KC A +TPSAFQIRYGGYK ++LR++M K+ SE+
Sbjct: 25 IGTISADFADEVSRKCKLARFTPSAFQIRYGGYKGVVAIDPRSHWKLSLRSSMSKFPSEN 84
Query: 468 TSLDILANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEALE 518
+LD+LA SKYQ R+ + L DN+FE KQ+ V +L+ ++T+ +A+E
Sbjct: 85 ITLDVLAYSKYQPCFLNRQLITLLSTLGVRDNIFELKQQAAVMQLNRLVTEPQAAIDAIE 144
Query: 519 LMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCL 578
LM E TNV+KELL CGY+PD EP+LSM+ QTF AS LLEL+T++RIFI G+AMMGCL
Sbjct: 145 LMPMGEITNVVKELLLCGYQPDVEPYLSMILQTFRASKLLELKTKSRIFIPEGRAMMGCL 204
Query: 579 DEKGTLEYGQ------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVD 620
DE TL+YG+ G +VVAK PCLHPGD+R+L+AV P L HMV+
Sbjct: 205 DETRTLKYGEVFIQASNSANESDKFVVTGKVVVAKNPCLHPGDIRILKAVYTPVLDHMVN 264
Query: 621 CVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIE 680
CV+FP +G RPH NECSGSD DG+IYFV WD D IP P YTPAP + L DV IE
Sbjct: 265 CVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPDLIPTRMVAPMDYTPAPTETLDHDVVIE 324
Query: 681 DVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATI 740
+V EYFA+YIVN+SLGII NAHVV+A E KA S +C L +L SI D+ KTGV A I
Sbjct: 325 EVHEYFANYIVNESLGIIANAHVVFADKESLKAESTQCIKLAELFSIAVDYPKTGVPAQI 384
Query: 741 PSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDM 800
PS L V+ YPDFMEK D+ Y S+ ++G LYRE+ +P I F K+ A + YDTD+
Sbjct: 385 PSELHVREYPDFMEKLDRATYISKGVIGKLYREIKKQSPH---IGHFTKDVARRSYDTDL 441
Query: 801 EVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRDLEA 860
V+G+++ + FK EYD KLGNLM++YGIK+EAE++S CI++MAK+F K D +A
Sbjct: 442 IVDGYQDYITEAVWFK--GEYDFKLGNLMEHYGIKSEAEIISGCILKMAKNFTKSSDADA 499
Query: 861 ISFSVRSLRKEARAWFNKKKND 882
I +V+SLRKEAR+WF+ D
Sbjct: 500 IRLAVKSLRKEARSWFSDMSAD 521
>gi|225457089|ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [Vitis vinifera]
gi|297733815|emb|CBI15062.3| unnamed protein product [Vitis vinifera]
Length = 1127
Score = 490 bits (1261), Expect = e-135, Method: Compositional matrix adjust.
Identities = 314/845 (37%), Positives = 441/845 (52%), Gaps = 143/845 (16%)
Query: 167 SIGQSSAICLELPSRALIPKALKDFFHYKESLVQFTLLPGFVFSCNSDL------NQDGK 220
S+GQS++ C E+ F +YK+ L + TL G F +S L K
Sbjct: 225 SLGQSTSFCWEIKEGFPALDIFASFPYYKD-LTELTLEQGEGFCSDSGLVPLVKCESGPK 283
Query: 221 HALEMLFHLRECC----------------------------------------YDPVSWL 240
A E+LF L YDP+S++
Sbjct: 284 LAYEILFQLNSLVHAQKISLAAVDTDLIEILSNLPVDTAIMILQKLHKRKSTRYDPISFI 343
Query: 241 REQYRKHVSSGQF----PTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYP 296
+ Q H+ + P+S + + ++ +++LVTPSK+Y GPE+ SN VV+ Y
Sbjct: 344 KAQ--AHIINMNIKNLPPSSHSRLTNNNVMSCHRVLVTPSKIYCLGPELESSNYVVKHYA 401
Query: 297 DEIDNFLRLSFVDEDLGKLYSTVLSPQISST--NGERRTRIYERVLSTLRNGIVIGDKKF 354
+F+R+SFV+ED KL S LS I RT IY R+LS LR GIVIG K+F
Sbjct: 402 AYASDFVRVSFVEEDWSKLPSNALSMSIRKAFFADPFRTEIYHRILSILREGIVIGAKRF 461
Query: 355 ETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREAL 414
+ LAFS SQ R N++WMFAS ++ DIRE MG F++I++V+K AAR+GQ F+SS + L
Sbjct: 462 QFLAFSASQLRSNSVWMFASNDKVRVDDIREWMGCFKKIRSVSKCAARMGQLFSSSVQTL 521
Query: 415 HV----------------------DSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGY 452
V IGKIS A+ VA+KCG TPSAFQIRYGGY
Sbjct: 522 PVPVQDVEVIPDIEVTSDGFGYCFSDGIGKISLSFAKQVAQKCGLH-QTPSAFQIRYGGY 580
Query: 453 ------------KVTLRNNMFKYKSESTSLDILANSK-----YQREGVARLRL----DNV 491
K++LR++M K++S++ L++ S+ RE V+ L D
Sbjct: 581 KGVIAVDRNSFRKLSLRSSMLKFESQNRMLNVTKWSESTPCYLNREIVSLLSTLGVEDEN 640
Query: 492 FERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQT 551
FE E + LD +LT+ + LE M +N N+L ++L GY+P+ EP+LSMM Q
Sbjct: 641 FEALLNEQMHLLDKMLTNRQAALDVLESMGGIDNKNILAKMLLQGYEPNVEPYLSMMLQA 700
Query: 552 FHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ----------------------- 588
+ S L ++RTR RIF+ + ++GCLDE G L YGQ
Sbjct: 701 YRESQLSDIRTRCRIFVPKARVLIGCLDETGILNYGQVYVRVTMTKAEHKCRNQSFFQKV 760
Query: 589 --------GLMVVAKKPCLHPGDMRVLRAVDVPALHH--MVDCVLFPAKGERPHTNECSG 638
G ++V K PCLHPGD+RVL AV L +VDC+LFP KGERPH NECSG
Sbjct: 761 DDTTSVVIGKVIVTKNPCLHPGDIRVLDAVYEVELEEKGLVDCILFPQKGERPHPNECSG 820
Query: 639 SDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGII 698
D DG+ +F+CWD IP P YT +I+ DVT+E+++++F DY++ND+LG+I
Sbjct: 821 GDLDGDQFFICWDEGLIPSQTEAPMDYTSRRPRIMDHDVTLEEIQKFFVDYMINDTLGVI 880
Query: 699 CNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDK 758
AH+V+A EP+KA S +C +L L S+ DF+KTG A +P L+ K +PDFME+ DK
Sbjct: 881 STAHLVHADREPEKARSKKCLELATLHSMAVDFAKTGAPAEMPRVLKPKEFPDFMERVDK 940
Query: 759 TWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAM--QFYDTDMEVNGFKEVAMQFDGFK 816
Y S +G LYR IA SF G + YD D+EV+GF E ++
Sbjct: 941 PMYISNGALGKLYRAT--IASRVNEKSSFVWSGTIPGAAYDHDLEVDGF-ETFLEIAKL- 996
Query: 817 YRTEYDNKLGNLMDYYGIKTEAEMLSRCIME--MAKSFDKKRDLEA---ISFSVRSLRKE 871
++ Y K+ LM++YG ++E EML+ + M D +R E I SV+SL+KE
Sbjct: 997 HKEMYAEKMATLMNFYGAESEDEMLTGNLRNKLMYLQRDNRRFTEMKDRILISVKSLQKE 1056
Query: 872 ARAWF 876
A+ W
Sbjct: 1057 AKEWL 1061
>gi|224133496|ref|XP_002321582.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222868578|gb|EEF05709.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1110
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 300/853 (35%), Positives = 453/853 (53%), Gaps = 150/853 (17%)
Query: 167 SIGQSSAICLELPSRALIPKALKDFFHYKESLVQFTLLPGFVFS----------CNSDLN 216
SIGQS++ C E+ ++F +Y+E + + L G F C SD
Sbjct: 227 SIGQSTSFCWEIGEGLEASDTFRNFPYYQEDMNRLDLEDGEEFCSASETVPLIRCGSD-- 284
Query: 217 QDGKHALEMLFHL----------------------------------------RECCYDP 236
K A E+LF L + CYDP
Sbjct: 285 ---KLAYEVLFQLNSLVHTQKISLAAVDSDLIKILRNLTVNTAIIILQKLHKLKMTCYDP 341
Query: 237 VSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYP 296
+S++++ R+ +SS P + ++ ++ L+TPSK++ GPE SN VV+ +
Sbjct: 342 LSFVKQSLRESLSS-----PPKSLTENNIMSCHRALITPSKIFCLGPEYETSNYVVKHFA 396
Query: 297 DEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGER--RTRIYERVLSTLRNGIVIGDKKF 354
+F+R++FV+ED KL + +S I + RT IY R+LS LR+G VIG K+F
Sbjct: 397 QYASDFIRVTFVEEDWSKLPANAISTSIQRGIFAKPFRTGIYHRILSILRDGFVIGAKRF 456
Query: 355 ETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREAL 414
E LAFS SQ R N++WMFAS + A DIR+ MG F +I++V+K AAR+GQ F+SS +
Sbjct: 457 EFLAFSASQLRSNSVWMFASNNGVKAEDIRKWMGCFDKIRSVSKCAARMGQLFSSSLQTF 516
Query: 415 HV----------------------DSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGY 452
V IGKIS A+ VA KCG + +TPSAFQIRYGGY
Sbjct: 517 VVPVQDVEIIPDIEVTTDGIDYCFSDGIGKISLSFAKQVAHKCGLS-HTPSAFQIRYGGY 575
Query: 453 K------------VTLRNNMFKYKSESTSLDILANSK-----YQREGVARLRL----DNV 491
K ++LR++M K+ SE+ L++ S+ RE ++ L D +
Sbjct: 576 KGVVAVDRNSFRKLSLRSSMLKFDSENRMLNVTKWSESMPCYLNREIISLLSTLGVADEI 635
Query: 492 FERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQT 551
F+ Q++ + RL +LT+ + LE ++ A++ N+L ++L GY+P+ EP+LSMM Q
Sbjct: 636 FQALQQKQLYRLRKMLTNKESALDVLENLAWADSKNILVQMLLQGYEPNVEPYLSMMLQA 695
Query: 552 FHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ----------------------- 588
+H ++L+ELR+R RIF+ G+ ++GCLDE G L+YGQ
Sbjct: 696 YHENSLMELRSRCRIFVPKGRILIGCLDESGILDYGQVYVRITMTKAELQCCDQSFFRKV 755
Query: 589 --------GLMVVAKKPCLHPGDMRVLRAVDVPALHH--MVDCVLFPAKGERPHTNECSG 638
G + V K PCLHPGD+RVL AV L +VDC++FP G RPH NECSG
Sbjct: 756 DESTSTIIGEVAVTKNPCLHPGDIRVLEAVYDVELEEKGLVDCIIFPQNGGRPHPNECSG 815
Query: 639 SDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGII 698
D DG+ +F+ WD +P P Y ++I+ +VT+E+++ +F DY++ND+LG I
Sbjct: 816 GDLDGDQFFISWDEGLLPCHTEAPMDYVGGRQRIMDHNVTLEEIQRFFVDYMINDTLGAI 875
Query: 699 CNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDK 758
AH+V+A EPDKA S +C L L S+ DF+KTG A +P L+ + +PDFME+ +K
Sbjct: 876 STAHLVHADCEPDKARSEKCLQLATLHSMAVDFAKTGAPAEMPLYLKPREFPDFMERAEK 935
Query: 759 TWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFK-- 816
Y S ++G LYR+++ + ++K+ A YD D+EV GF++ F G
Sbjct: 936 QMYISDGVLGKLYRDIHDSTRQERSNFMWSKKIAEATYDQDLEVKGFED----FLGIASI 991
Query: 817 YRTEYDNKLGNLMDYYGIKTEAEMLSRCIME----MAKSFDKKRDL-EAISFSVRSLRKE 871
Y+ +Y K+ LMDYYG KTE E+L+ + + + K D+ + I S+++L+KE
Sbjct: 992 YKEKYMEKMSTLMDYYGAKTEDEILTGNLRHRPTYLQRDNRKYGDVKDRILVSLKNLKKE 1051
Query: 872 ARAWFNKKKNDSD 884
A+ WF N ++
Sbjct: 1052 AKEWFESSCNPTE 1064
>gi|449440690|ref|XP_004138117.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cucumis sativus]
gi|316989905|gb|ADU77018.1| RNA-dependent RNA polymerase 2 [Cucumis sativus]
Length = 1117
Score = 487 bits (1253), Expect = e-134, Method: Compositional matrix adjust.
Identities = 286/757 (37%), Positives = 421/757 (55%), Gaps = 98/757 (12%)
Query: 209 FSCNSDLNQDGKHALEMLFHLRECCYDPVSWLREQ---YRKHVSSGQFPTSPAVALDGGL 265
F C D++ + L+ L L+ CYDP+S+L+ Q Y+++ S P S L +
Sbjct: 314 FLCTLDIDT-ALNVLQRLHQLKFVCYDPLSFLKTQLHVYKRNCKS--LPPSSQKRLSNNV 370
Query: 266 IYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQIS 325
+ ++LVTPS++Y GPE+ SN VV+++ +F+R++FV+ED KL + ++ I
Sbjct: 371 MNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYASDFMRVTFVEEDWSKLPAGAVTTSIQ 430
Query: 326 S--TNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADI 383
+ RT IY R+++ LR+GIVIG K+FE LAFS SQ R N++WMFAS L A +I
Sbjct: 431 RGILSKPYRTEIYHRIMTVLRDGIVIGAKRFEFLAFSASQLRSNSVWMFASSDNLKAEEI 490
Query: 384 RERMGDFREIKNVTKYAARLGQSFASSREALHVDS----------------------NIG 421
R+ MG F +I++++K AAR+GQ F+SS + L V + IG
Sbjct: 491 RQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTRDVEIIPDIEVNTDGIDYCFSDGIG 550
Query: 422 KISAELAETVAKKCGYAIYTPSAFQIRYGGY------------KVTLRNNMFKYKSESTS 469
KIS A VA KCG + PSAFQIRYGGY K++LR++M K++S++
Sbjct: 551 KISLSFARQVADKCGVN-HIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSMLKFESKNKM 609
Query: 470 LDILANSK----YQREGVARLR-----LDNVFERKQREVVARLDAILTDSSKVQEALELM 520
L++ Y +A L D FE Q+E + L +LTD LE
Sbjct: 610 LNVTKCCDSMPCYLNREIATLLSTLGVKDESFEALQQEQLHLLKRMLTDKDVALNVLENF 669
Query: 521 SSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDE 580
A++ N+L ++LN GY+P+ EP+LSMM Q + + +LR+R RIF+ G+ ++GCLDE
Sbjct: 670 HGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKGRILLGCLDE 729
Query: 581 KGTLEYGQ-------------------------------GLMVVAKKPCLHPGDMRVLRA 609
G L YGQ G +VV K PCLHPGD+RVL A
Sbjct: 730 TGILNYGQVYACITLTKSELQSRNQNYFHTIDETKSILLGKVVVTKNPCLHPGDVRVLEA 789
Query: 610 VDVPALHH--MVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTP 667
+ L +VDC++FP KG RPHTNECSG D DG++YF+ WD + IPP P YT
Sbjct: 790 IFHVELEEKGLVDCLIFPQKGARPHTNECSGGDLDGDLYFISWDENLIPPKTEAPMDYTG 849
Query: 668 APEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSI 727
+I+ DV +E+++++F DY++ND+LG I AH+V+A EP KA+S +C +L L S+
Sbjct: 850 RRPRIMDHDVKLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSAKCLELAALHSM 909
Query: 728 VGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSF 787
DF+KTG A +P L+ + +PDFME+ DK Y S +++G LYR + +
Sbjct: 910 AVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYISSNVLGKLYRAAVKSIEQERSRLVW 969
Query: 788 AKEGAMQFYDTDMEVNGFK---EVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRC 844
++E A YD D+EV+GF+ E+A Y+ Y K+ LM+YYG + E E+L
Sbjct: 970 SEEAARAIYDYDLEVDGFEAFLEIAE-----TYKEMYIEKMSILMNYYGAEYEDEILMGD 1024
Query: 845 IMEMAKSFDKKR----DL-EAISFSVRSLRKEARAWF 876
+ A + D+ + I SV++LRKE + WF
Sbjct: 1025 LRSRASYLQRDNRKYGDMKDRILLSVKNLRKEVKEWF 1061
>gi|449518949|ref|XP_004166498.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cucumis sativus]
Length = 1117
Score = 487 bits (1253), Expect = e-134, Method: Compositional matrix adjust.
Identities = 286/757 (37%), Positives = 421/757 (55%), Gaps = 98/757 (12%)
Query: 209 FSCNSDLNQDGKHALEMLFHLRECCYDPVSWLREQ---YRKHVSSGQFPTSPAVALDGGL 265
F C D++ + L+ L L+ CYDP+S+L+ Q Y+++ S P S L +
Sbjct: 314 FLCTLDIDT-ALNVLQRLHQLKFVCYDPLSFLKTQLHVYKRNCKS--LPPSSQKRLSNNV 370
Query: 266 IYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQIS 325
+ ++LVTPS++Y GPE+ SN VV+++ +F+R++FV+ED KL + ++ I
Sbjct: 371 MNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYASDFMRVTFVEEDWSKLPAGAVTTSIQ 430
Query: 326 S--TNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADI 383
+ RT IY R+++ LR+GIVIG K+FE LAFS SQ R N++WMFAS L A +I
Sbjct: 431 RGILSKPYRTEIYHRIMTVLRDGIVIGAKRFEFLAFSASQLRSNSVWMFASSDNLKAEEI 490
Query: 384 RERMGDFREIKNVTKYAARLGQSFASSREALHVDS----------------------NIG 421
R+ MG F +I++++K AAR+GQ F+SS + L V + IG
Sbjct: 491 RQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTRDVEIIPDIEVNTDGIDYCFSDGIG 550
Query: 422 KISAELAETVAKKCGYAIYTPSAFQIRYGGY------------KVTLRNNMFKYKSESTS 469
KIS A VA KCG + PSAFQIRYGGY K++LR++M K++S++
Sbjct: 551 KISLSFARQVADKCGVN-HIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSMLKFESKNKM 609
Query: 470 LDILANSK----YQREGVARLR-----LDNVFERKQREVVARLDAILTDSSKVQEALELM 520
L++ Y +A L D FE Q+E + L +LTD LE
Sbjct: 610 LNVTKCCDSMPCYLNREIATLLSTLGVKDESFEALQQEQLHLLKRMLTDKDVALNVLENF 669
Query: 521 SSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDE 580
A++ N+L ++LN GY+P+ EP+LSMM Q + + +LR+R RIF+ G+ ++GCLDE
Sbjct: 670 HGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKGRILLGCLDE 729
Query: 581 KGTLEYGQ-------------------------------GLMVVAKKPCLHPGDMRVLRA 609
G L YGQ G +VV K PCLHPGD+RVL A
Sbjct: 730 TGILNYGQVYACITLTKSELQNRNQNYFHTIDETKSILLGKVVVTKNPCLHPGDVRVLEA 789
Query: 610 VDVPALHH--MVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTP 667
+ L +VDC++FP KG RPHTNECSG D DG++YF+ WD + IPP P YT
Sbjct: 790 IFHVELEEKGLVDCLIFPQKGARPHTNECSGGDLDGDLYFISWDENLIPPKTEAPMDYTG 849
Query: 668 APEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSI 727
+I+ DV +E+++++F DY++ND+LG I AH+V+A EP KA+S +C +L L S+
Sbjct: 850 RRPRIMDHDVKLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSAKCLELAALHSM 909
Query: 728 VGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSF 787
DF+KTG A +P L+ + +PDFME+ DK Y S +++G LYR + +
Sbjct: 910 AVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYISSNVLGKLYRAAVKSIEQERSRLVW 969
Query: 788 AKEGAMQFYDTDMEVNGFK---EVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRC 844
++E A YD D+EV+GF+ E+A Y+ Y K+ LM+YYG + E E+L
Sbjct: 970 SEEAARAIYDYDLEVDGFEAFLEIAE-----TYKEMYIEKMSILMNYYGAEYEDEILMGD 1024
Query: 845 IMEMAKSFDKKR----DL-EAISFSVRSLRKEARAWF 876
+ A + D+ + I SV++LRKE + WF
Sbjct: 1025 LRSRASYLQRDNRKYGDMKDRILLSVKNLRKEVKEWF 1061
>gi|302814495|ref|XP_002988931.1| hypothetical protein SELMODRAFT_235652 [Selaginella moellendorffii]
gi|300143268|gb|EFJ09960.1| hypothetical protein SELMODRAFT_235652 [Selaginella moellendorffii]
Length = 755
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 280/700 (40%), Positives = 397/700 (56%), Gaps = 89/700 (12%)
Query: 258 AVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYS 317
AVA D G IYV ++LVTP KVYF GPE+ SNRV R + ++DNFLR++FVDED +
Sbjct: 14 AVAADEGQIYVKRVLVTPLKVYFIGPELEESNRVTRHFSHKLDNFLRVTFVDED----FD 69
Query: 318 TVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE 377
++ S +SS+ G T +Y R+L+ LR GI + K F+ LAFS SQ REN+LWMFA E
Sbjct: 70 SLSSYVLSSSRGRTNTEVYYRLLAILRLGIKLCGKDFQFLAFSASQLRENSLWMFADDDE 129
Query: 378 LTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHV--------------------- 416
+T IR+ MGDF I+NV K AAR+GQSF++S L V
Sbjct: 130 VTGEYIRQWMGDFLSIRNVAKCAARMGQSFSTSTRTLDVPRGEVRQLSDVETFTPEGHKY 189
Query: 417 --DSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGY------------KVTLRNNMFK 462
IG IS E A VA++C A PSAFQIRYGGY K++LR +M K
Sbjct: 190 CFSDGIGTISTEFATRVARRC-RASTVPSAFQIRYGGYKGVVAVDPASCFKLSLRPSMSK 248
Query: 463 YKSESTSLDILANSKY-----QREGVARLRL----DNVFERKQREVVARLDAILTDSSKV 513
+ SE T+LD+L ++Y RE ++ L D VFER Q V LD +L DS+
Sbjct: 249 FPSEQTTLDVLEKTRYIPSYLNREIISLLSTLEVPDEVFERMQAHQVELLDRMLLDSAAT 308
Query: 514 QEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQA 573
+ L ++ + E +L ++ G+ P EP++ + Q F A+ LL L ++RIF+ G+
Sbjct: 309 YDVLRVLYAGECHKLLVSMVLAGFSPVTEPYMRSLLQAFRAAQLLSLEKKSRIFVPKGRL 368
Query: 574 MMGCLDEKGTLEYGQ---------------------------------GLMVVAKKPCLH 600
+MGCLDE+ L YGQ G +VVAK PCLH
Sbjct: 369 LMGCLDEQRVLRYGQCFVQVSPLQGVPVEEEIHCDRGVTARNQAFAVTGSVVVAKNPCLH 428
Query: 601 PGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQF 660
PGD+ VL AVDVP LHHMVDC++FP +G RPH NECSGSD DG+ YFV WD IPP +
Sbjct: 429 PGDVLVLEAVDVPELHHMVDCIVFPQQGPRPHPNECSGSDLDGDQYFVSWDSALIPPKRH 488
Query: 661 QPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPD 720
P Y P L V +E+++E+F ++I +DSLG+I +AH+ + + +C +
Sbjct: 489 PPMNYEAPPAMELDHSVRLEEIQEFFVNWITSDSLGVIAHAHLALSDWSELQTRDPKCME 548
Query: 721 LVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPS 780
L +L S+ DF KTGV A +P LR + YPDFMEK++K Y S ++G LYR +
Sbjct: 549 LARLYSVAVDFPKTGVPAVMPPELRPEQYPDFMEKRNKRTYISTRVIGKLYRSIRESHRD 608
Query: 781 TTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEM 840
T T ++ Q YD + V G++ + FK Y++KL +++++Y + +EAE+
Sbjct: 609 TNTSPLVSERSFDQQYDRALVVQGYQSHLEEAKFFK--ECYNSKLTSILNHYKV-SEAEI 665
Query: 841 LSRCIMEMAKSFDKKRDLEAIS---FSVRSLRKEARAWFN 877
+S I +A+ + ++R +A++ + ++L KEAR WF+
Sbjct: 666 MSGSIRSLAR-YSRRRQGDAMARVVLAAKALVKEARGWFD 704
>gi|302812554|ref|XP_002987964.1| hypothetical protein SELMODRAFT_126929 [Selaginella moellendorffii]
gi|300144353|gb|EFJ11038.1| hypothetical protein SELMODRAFT_126929 [Selaginella moellendorffii]
Length = 1052
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 284/696 (40%), Positives = 403/696 (57%), Gaps = 74/696 (10%)
Query: 256 SPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKL 315
S V DGG YV +++VTP+KVY GPE+ SN V R Y D NFLR+SFVDE+ L
Sbjct: 311 SELVEPDGGYTYVKRLVVTPTKVYCTGPELERSNGVTRRYKDFAANFLRVSFVDENFETL 370
Query: 316 YSTV--LSPQISSTNG--ERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWM 371
Y+ L ++S G + +Y RVL+ +R+G+ IG KKF+ L FS SQ RE++LWM
Sbjct: 371 YADAVRLPTKVSVQIGLLPEPSSVYHRVLAVVRDGVTIGGKKFKFLGFSASQLREHSLWM 430
Query: 372 FASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHV--------------- 416
FA +TA IR MGDF N+ K AAR+GQSF+SSR +L V
Sbjct: 431 FADAGSVTAESIRAWMGDFGGFTNIAKCAARIGQSFSSSRSSLEVLEDELSSVEDIYCGT 490
Query: 417 ----DSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK------------VTLRNNM 460
+GKIS A +VA+ C + SA QIRY GYK ++LR +M
Sbjct: 491 RYCFSDGVGKISKAFATSVARACNMPVVL-SALQIRYAGYKGVVAVDPTCSTKLSLRPSM 549
Query: 461 FKYKSESTSLDILANSKY-----QREGVARLRL----DNVFERKQREVVARLDAILTDSS 511
K+ SE T LD+L S+Y R+ + + D VFER Q+E + LD +L+D
Sbjct: 550 LKFPSERTGLDVLKASQYAPYYLNRQSIILMTTLGVPDEVFERMQKEELKILDEMLSDPQ 609
Query: 512 KVQEALELMSSA-ENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQN 570
E L SS E +++ +L GYKP EPFL + F + L LRT++RI++
Sbjct: 610 TAIEVLRSSSSGGEAHSIMVAMLQAGYKPAHEPFLRRLLDNFRSLQLYLLRTKSRIYVPK 669
Query: 571 GQAMMGCLDEKGTLEYGQ-----------------GLMVVAKKPCLHPGDMRVLRAVDVP 613
G+ ++GCLDE G L+YGQ G +VV K PCLHPGD+ VL AVDVP
Sbjct: 670 GRCLLGCLDETGVLDYGQVFVQVGVTRSESACVVLGKVVVTKNPCLHPGDLLVLEAVDVP 729
Query: 614 ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKIL 673
LHHM+DCV+FP +G+RPH NECSGSD DG++YFV WD +PP+ +P Y P L
Sbjct: 730 GLHHMIDCVVFPQRGKRPHPNECSGSDLDGDLYFVTWDKSLVPPVTHEPMDYEPGTAAKL 789
Query: 674 ARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSK 733
VT+E+++ +F D +V+DSLG+I NAH+V+A E ++A +C +L +L+S DF+K
Sbjct: 790 DHSVTLEEIQRFFVDSMVHDSLGVISNAHLVHADKELERAKDPKCLELARLASTAVDFAK 849
Query: 734 TGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREV--NG--IAPSTTTIKSFAK 789
TG+ A IP LR + YPDFME + K+ Y SQ ++G LYR + NG + ++ + + K
Sbjct: 850 TGIPAVIPVDLRPRDYPDFMENEFKSTYTSQSVLGKLYRSLQSNGRIFSQRSSAVAASPK 909
Query: 790 EGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMA 849
E +F D + V+G+++ + K YD KL L+ +Y I TEAE+++ ++ +
Sbjct: 910 EMDQEF-DRSLTVDGYEQHVSEARSLK--ELYDTKLERLLRHYEI-TEAEIVTGNVLCLG 965
Query: 850 KSFDK-KRD--LEAISFSVRSLRKEARAWFNKKKND 882
K+ +K KR+ + I+ +++SL KEA WF N+
Sbjct: 966 KANEKTKRNDTRDRIACAMKSLAKEAGRWFEAGLNE 1001
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 45/111 (40%), Gaps = 12/111 (10%)
Query: 43 SRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAKRRTPHFAKRTPHYKLGGD--- 99
SR +A V+F T EA+ LA E N+ L A R K H + GD
Sbjct: 2 SRGYAFVQFATAEASQLASQLAAE-----NALLFYGRALRIQAR--KAVTHGPIRGDERV 54
Query: 100 --LKLNFGCQISKDKFSVFWSQENVSVKLCSDLRKFGFFLSYESVDYKLEL 148
+ L G + WS V+ + C + L ++ VDYKLEL
Sbjct: 55 EGIVLTMGFARGESGIDCLWSCSGVAAEFCFGSCQLNLLLQHDGVDYKLEL 105
>gi|302819337|ref|XP_002991339.1| hypothetical protein SELMODRAFT_448382 [Selaginella moellendorffii]
gi|300140919|gb|EFJ07637.1| hypothetical protein SELMODRAFT_448382 [Selaginella moellendorffii]
Length = 1134
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 286/717 (39%), Positives = 403/717 (56%), Gaps = 95/717 (13%)
Query: 256 SPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKL 315
S V DGG YV +++VTP+KVY GPE+ SN V R Y D NFLR+SFVDE+ L
Sbjct: 372 SELVEPDGGYTYVKRLVVTPAKVYCTGPELERSNGVTRRYKDFAANFLRVSFVDENFETL 431
Query: 316 YSTV--LSPQISSTNG--ERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWM 371
Y+ L ++S G + +Y RVL+ +R+G+ IG KKF+ L FS SQ RE++LWM
Sbjct: 432 YADAVRLPTKVSVQIGLLPEPSSVYHRVLAVVRDGVTIGGKKFKFLGFSASQLREHSLWM 491
Query: 372 FASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHV--------------- 416
FA +TA IR MGDF N+ K AAR+GQSF+SSR +L V
Sbjct: 492 FAGAGSVTAESIRAWMGDFGGFTNIAKCAARIGQSFSSSRSSLEVLEDELSSVEDIYCGT 551
Query: 417 ----DSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGY------------KVTLRNNM 460
IGKIS A +VA+ C + PSA QIRY GY K++LR +M
Sbjct: 552 RYCFSDGIGKISKAFATSVARACNMPV-VPSALQIRYAGYKGVVAVDPTCSTKLSLRPSM 610
Query: 461 FKYKSESTSLDILANSKY-----QREGVARLRL----DNVFERKQREVVARLDAILTDSS 511
K+ SE T LD+L S+Y R+ + + D VFER Q E + LD +L D
Sbjct: 611 LKFPSERTGLDVLKASQYAPYYLNRQSIILMTTLGVPDEVFERMQNEELKILDEMLRDPQ 670
Query: 512 KVQEALELMSS-AENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQN 570
E L SS E +++ +L GYKP EPFL + F + L LRT++RI++
Sbjct: 671 TAIEVLRSSSSGGEVHSIMVAMLQAGYKPAHEPFLRRLLDNFRSLQLYLLRTKSRIYVPK 730
Query: 571 GQAMMGCLDEKGTLEYGQ--------------------------------------GLMV 592
G+ ++GCLDE G L+YGQ G +V
Sbjct: 731 GRCLLGCLDETGVLDYGQVFVQVSPTPGTRRVVDDGLDDARPRRGVTRSESACVVLGKVV 790
Query: 593 VAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDH 652
V K PCLHPGD+ VL AVDVP LHHM+DCV+FP +G+RPH NECSGSD DG++YFV WD
Sbjct: 791 VTKNPCLHPGDLLVLEAVDVPGLHHMIDCVVFPQRGKRPHPNECSGSDLDGDLYFVTWDK 850
Query: 653 DRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDK 712
+PP+ +P Y P L VT+E+++++F D +V+DSLG+I NAH+V+A E ++
Sbjct: 851 SLVPPVTHEPMDYEPGTAAKLDHSVTLEEIQQFFVDSMVHDSLGVISNAHLVHADKELER 910
Query: 713 AMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYR 772
A +C +L +L+S DF+KTG+ A IP LR + YPDFME + K+ Y SQ ++G LYR
Sbjct: 911 AKDPKCLELARLASTAVDFAKTGIPAVIPVDLRPRDYPDFMENEFKSTYTSQSVLGKLYR 970
Query: 773 EV--NG--IAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNL 828
+ NG + ++ + + KE +F D + V+G+++ + K YD KL L
Sbjct: 971 SLQSNGRIFSQRSSAVAASPKEMDEEF-DRSLIVDGYEQHVAEARLLK--ELYDTKLERL 1027
Query: 829 MDYYGIKTEAEMLSRCIMEMAKSFDK-KRD--LEAISFSVRSLRKEARAWFNKKKND 882
+ +Y I TEAE+++ ++ + K+ +K KR+ + I+ +++SL KEA WF N+
Sbjct: 1028 LRHYEI-TEAEIVTGNVLCLGKANEKTKRNDTRDRIACAMKSLAKEAGRWFEAGLNE 1083
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 55/136 (40%), Gaps = 15/136 (11%)
Query: 21 EFLEEHTGEGTVSGVEVGQ---NKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKA 77
E LE G GTV + N SR +A V+F T EA+ LA E N+ L
Sbjct: 19 ECLESVCGRGTVVSCSIDTAHANWMSRGYAFVQFATAEASQLASQLAAE-----NALLFY 73
Query: 78 SSAKRRTPHFAKRTPHYKLGGD-----LKLNFGCQISKDKFSVFWSQENVSVKLCSDLRK 132
A R H K H + GD + L G + WS V+ + C +
Sbjct: 74 GRALRIQAH--KGVTHGPIRGDERVEGIVLTMGFARGESGIDCLWSCSGVAAEFCFGSCQ 131
Query: 133 FGFFLSYESVDYKLEL 148
L ++ VDYKLEL
Sbjct: 132 LNLLLQHDGVDYKLEL 147
>gi|315307484|gb|ADU04145.1| hypothetical protein [Gossypium hirsutum]
Length = 1147
Score = 474 bits (1219), Expect = e-130, Method: Compositional matrix adjust.
Identities = 282/753 (37%), Positives = 422/753 (56%), Gaps = 95/753 (12%)
Query: 223 LEMLFHLRECCYDPVSWLREQYRKHVSSGQ---FPTSPAVAL-DGGLIYVNKILVTPSKV 278
L+ L L+ CY+PVS+++ + + +G+ P S + L + ++ + L+TP+K+
Sbjct: 329 LQKLRLLQSPCYNPVSFVKAK----LPTGKNYRIPLSVSERLKNHNVMSCRRALITPTKI 384
Query: 279 YFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGER--RTRIY 336
Y GPE+ +N VV+++ + +F+R++FV+ED KL + +S + R +T+IY
Sbjct: 385 YCLGPELETANYVVKNFVEYASDFMRVTFVEEDWSKLSANAISTGVHLGVFSRPFKTKIY 444
Query: 337 ERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNV 396
+R+L L+NGIVIGDK+FE LAFS SQ R N++WMFAS E+ A DIRE MG F++I+++
Sbjct: 445 DRILYVLQNGIVIGDKRFEFLAFSASQLRSNSVWMFASNDEVKAEDIREWMGCFKKIRSI 504
Query: 397 TKYAARLGQSFASSREALHV----------------------DSNIGKISAELAETVAKK 434
+K A+R+GQ F+SS L V IGKIS A VA+K
Sbjct: 505 SKCASRMGQLFSSSMPTLVVPVQDVEIIDDIEVKTDGINYCFSDGIGKISLPFARQVAEK 564
Query: 435 CGYAIYTPSAFQIRYGGYK------------VTLRNNMFKYKSESTSLDILANSK----- 477
CG + PSAFQIRYGGYK ++LR++M K++S+ L++ S+
Sbjct: 565 CGLN-HIPSAFQIRYGGYKGVVAVDRNSFWKMSLRDSMLKFESKVRMLNVTKWSESMPCF 623
Query: 478 YQREGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELL 533
RE V D VFER Q E + L +LT+ + L+ + + N+L E+L
Sbjct: 624 LNREIVTLFSTLGIKDEVFERMQEEQLCLLGKMLTNREAALDTLQSLGGVNSKNILVEML 683
Query: 534 NCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ----- 588
Y+P+ +P+LSMM Q + + L +L++R RIF+ G+ ++GCLDE GTL YGQ
Sbjct: 684 QF-YEPNVQPYLSMMLQAHYENLLSDLKSRCRIFVPKGRILIGCLDETGTLNYGQVYLCI 742
Query: 589 --------------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHH--MVD 620
G +VV K PCLHPGD+RVL AV P L +VD
Sbjct: 743 KMKKAELECADQSYFRKVDEETAIVIGKVVVTKNPCLHPGDVRVLEAVYEPQLEEKGLVD 802
Query: 621 CVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIE 680
C++FP KGERPH NECSG D DG+ +F+ WD D IP P YT +I+ +VT+E
Sbjct: 803 CLVFPQKGERPHPNECSGGDLDGDQFFISWDKDLIPCQTEPPMDYTGRRPRIMDHEVTLE 862
Query: 681 DVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATI 740
+++++F DY++ND+LG I AH+V+A EPDKA S C L L S+ DF+KTG A +
Sbjct: 863 EIQKFFVDYMINDTLGAISTAHLVHADREPDKACSENCLALATLHSMAVDFAKTGAPAEM 922
Query: 741 PSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDM 800
P L+ + +PDFM++ +K Y S ++G LYR T + + KE A YD D+
Sbjct: 923 PRALKPREFPDFMQRGNKPMYTSSGVLGKLYRATINSTVQTRSKFVWTKEMAELVYDHDL 982
Query: 801 EVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSF--DKKR-- 856
EVNGF+ + + ++ Y+ ++ LM YY ++ E E+L+ I A+ D +R
Sbjct: 983 EVNGFESLISVAE--THKEMYEERMSLLMSYYDVEYEDEILTGNIYNKAQFLLRDNRRYG 1040
Query: 857 -DLEAISFSVRSLRKEARAWFNKKKNDSDSSHK 888
E I SV+ L++EA+ WF + +D K
Sbjct: 1041 EMKERIVLSVKDLQREAKEWFKSSCSKADEHQK 1073
>gi|255540733|ref|XP_002511431.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
gi|223550546|gb|EEF52033.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
Length = 983
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 325/925 (35%), Positives = 471/925 (50%), Gaps = 171/925 (18%)
Query: 95 KLGGD------LKLNFGCQISKDKFSVFWSQENVSVKLCSDLRKFGFFLSYESVDYKLEL 148
+LGGD LKL +G +I K S +++ K +D + + E D+
Sbjct: 15 RLGGDTLNAILLKLKYGARIYKKI-----SGPDIASKFSAD----RYHMCKEDFDF---- 61
Query: 149 SNESIWQIELHRPSGHSV-SIGQSSAICLELPSRALIPKALKDFFHYKESLVQFTLLPGF 207
IW + SV S+GQS++ C E+ K F +Y E+ + L G
Sbjct: 62 ----IW---VRTTDFSSVKSVGQSTSFCWEIEEGLEASDIFKSFPYYTEAREEVILEDGE 114
Query: 208 VFSCNSDL------NQDGKHALEMLFHLRE------------------------------ 231
+ S++ D K E+LF L
Sbjct: 115 EWGSASEIVPLVKCGSDSKLPYEILFQLNSLVHTQKISLAAVDTNLITTLGSLTIDTATM 174
Query: 232 ----------CCYDPVSWLREQYRKHVSSGQ----FPTSPAVALDGGLIYVNKILVTPSK 277
CYDP++++++Q HV F +S ++ ++ ++ L+TPSK
Sbjct: 175 ILQKLHKLAVTCYDPLAFIKKQL--HVPGRNLKRPFFSSSKNLVNHNIMSCHRALITPSK 232
Query: 278 VYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGER--RTRI 335
+Y GPE+ SN VV+++ +F+R++FV+ED KL + +S I + RT I
Sbjct: 233 IYCLGPELESSNYVVKNFASYASDFMRVTFVEEDWSKLPANAISMSIQRGIFAKPFRTGI 292
Query: 336 YERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKN 395
Y R+LS LR+GIVIG KKFE LAFS SQ R N++WMFAS + A +IRE MG F +I +
Sbjct: 293 YHRILSILRDGIVIGAKKFEFLAFSASQLRSNSVWMFASNDKKKAEEIREWMGCFNKIHS 352
Query: 396 VTKYAARLGQSFASSREALHV----------------------DSNIGKISAELAETVAK 433
++K AAR+GQ F+SS++ V IGKIS A VA+
Sbjct: 353 ISKCAARMGQLFSSSKQTFIVSPQDMEIIPDIEVTSDGINYCFSDGIGKISLSFARQVAQ 412
Query: 434 KCGYAIYTPSAFQIRYGGY------------KVTLRNNMFKYKSESTSLDILANSK---- 477
KCG TPSAFQIRYGGY K++LR++M K++SE+ L++ S+
Sbjct: 413 KCGLN-RTPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSMCKFESENRMLNVTKWSESMPC 471
Query: 478 -YQREGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKEL 532
RE + L D +FE Q++ + L+ +LT+ LE ++ A N+L ++
Sbjct: 472 YLNREIITLLTTLGVKDEIFEGLQQQQLQLLNRMLTNRESALNVLENLAWANCKNILIKM 531
Query: 533 LNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ---- 588
L GY+P+ EP+LSMM Q +H + L+ELR+R RIF+ G+ ++GCLDE L+YGQ
Sbjct: 532 LVQGYEPNVEPYLSMMLQAYHENLLVELRSRCRIFVPKGRILIGCLDETRILDYGQVYVR 591
Query: 589 ---------------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHH--MV 619
G ++V K PCLHPGD+RVL AV L +V
Sbjct: 592 ITMTKAELQDADQASFHRVDETTAVVTGKVIVTKNPCLHPGDIRVLEAVYEVELEEKGLV 651
Query: 620 DCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTI 679
DC+LFP KGERPH NECSG D DG+ +F+ WD IP P Y + + DVT+
Sbjct: 652 DCILFPQKGERPHPNECSGGDLDGDQFFISWDKGLIPGETESPMDYQGRRPRKMDHDVTL 711
Query: 680 EDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAAT 739
E+++++F DY++ND+LG I AH+V+A EPDKA S++C L +L S+ DF+KTG A
Sbjct: 712 EEIQKFFIDYMINDTLGAISTAHLVHADREPDKARSSKCLQLAELHSMAVDFAKTGAPAE 771
Query: 740 IPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKS---FAKEGAMQFY 796
+P L+ K +PDFME+ DK Y S ++G LYR G ST +S + + A Y
Sbjct: 772 MPKALKPKEFPDFMERIDKKMYISGGVLGKLYR---GTLDSTRQQRSKFVWTENIAEATY 828
Query: 797 DTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSF--DK 854
D D+EV GF+E ++ Y KL LMDYY K E E+L+ + A D
Sbjct: 829 DHDLEVKGFEEFVEI--AISHKDMYVEKLSGLMDYYEAKKEDEILTGNLQNKAMYLQRDN 886
Query: 855 KR---DLEAISFSVRSLRKEARAWF 876
+R + I SV+SL+KEA+ WF
Sbjct: 887 RRYGDTKDRILISVKSLQKEAKEWF 911
>gi|51989474|gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nicotiana benthamiana]
Length = 1120
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 275/742 (37%), Positives = 413/742 (55%), Gaps = 92/742 (12%)
Query: 223 LEMLFHLRECCYDPVSWLREQYRKHV----SSGQFPTSPAVALDGGLIYVNKILVTPSKV 278
L+ + L+ C++PV +++ R HV S Q +S + ++ ++ V+++LVTPSKV
Sbjct: 329 LQKMHKLQSTCFEPVPFIKT--RLHVLGKNSKNQPSSSYSRLVNQNMMSVHRVLVTPSKV 386
Query: 279 YFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGER--RTRIY 336
Y GPE+ SN +V+++ +FLR++FV+ED GKL +S + + RT+IY
Sbjct: 387 YCLGPELETSNYIVKNFALHASDFLRVTFVEEDWGKLSPNAISMSVEQGIFAKPYRTKIY 446
Query: 337 ERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNV 396
R+LS LR+G+VIG K+F LAFS SQ R N++WMFAS + A DIRE MG F +I++V
Sbjct: 447 HRILSILRDGLVIGSKRFLFLAFSASQLRSNSVWMFASNEHVKAEDIREWMGCFNKIRSV 506
Query: 397 TKYAARLGQSFASSREALHVDS----------------------NIGKISAELAETVAKK 434
+K AAR+GQ F++S + + V S IGKIS A VA+K
Sbjct: 507 SKCAARMGQLFSTSFQTMEVQSPHVEILPDIEVTSDGVSYCFSDGIGKISQAFASQVAQK 566
Query: 435 CGYAIYTPSAFQIRYGGY------------KVTLRNNMFKYKSESTSLDILANSK----- 477
CG + YTPSAFQIRYGGY K++LR +M K++S++ L+I S
Sbjct: 567 CGLS-YTPSAFQIRYGGYKGVIAVDRNSFRKLSLRGSMLKFESKNRMLNITKWSDAMPCY 625
Query: 478 YQREGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELL 533
RE V L D VFE + L +LT + + LE + + +L +L
Sbjct: 626 LNREIVILLSTLGVEDKVFEDLLDNHLHLLGKMLTTNEAALDVLESIGGGDVKKILMRML 685
Query: 534 NCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ----- 588
+ GY P+ EP+LSMM Q+ + L +LR+R RIFI G+ ++GCLDE G L YGQ
Sbjct: 686 HQGYAPNLEPYLSMMLQSHFENQLSDLRSRCRIFIHKGRVLVGCLDETGILNYGQVYARI 745
Query: 589 --------------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHH--MVD 620
G +VV K PCLHPGD+RVL AV AL VD
Sbjct: 746 TMTKAELQSAQQSFFQKVDETTAVVRGNVVVTKNPCLHPGDVRVLEAVYEVALEEKAWVD 805
Query: 621 CVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIE 680
C++FP KGERPH NECSG D DG++YF+ WD + IP P YT +I+ +VT++
Sbjct: 806 CIIFPQKGERPHPNECSGGDLDGDLYFISWDENLIPRQTVTPMDYTGRRTRIMDHEVTLQ 865
Query: 681 DVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATI 740
+++ +F DY+++D+LG I AH+V+A EPDKA++ +C L L S+ DF+KTG AA +
Sbjct: 866 EIQRFFVDYMISDTLGAISTAHLVHADREPDKALNPKCLQLATLHSMAVDFAKTGAAAEM 925
Query: 741 PSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDM 800
P L+ + +PDF+E+ DK Y S+ ++G LYR + + + + + YD +
Sbjct: 926 PRFLKPREFPDFLERWDKPMYISEGVLGKLYRAIVNSSVRSNSDDLGSVRAIQDAYDHAL 985
Query: 801 EVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSF--DKKRDL 858
+G++ A ++ Y +++ +L++YYG + E E+L+ + + + D +R
Sbjct: 986 LFDGYE--AFIETAKNHKETYLDRMNSLLNYYGAEKEVEILTGNLRQKSVYLQRDNRRYF 1043
Query: 859 EA---ISFSVRSLRKEARAWFN 877
E I S +SL+KE + WF
Sbjct: 1044 ELKDRILVSAKSLQKEVKGWFT 1065
>gi|315307478|gb|ADU04140.1| hypothetical protein [Gossypium hirsutum]
Length = 1147
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 282/756 (37%), Positives = 425/756 (56%), Gaps = 101/756 (13%)
Query: 223 LEMLFHLRECCYDPVSWLREQYRKHVSSGQ---FPTSPAVAL-DGGLIYVNKILVTPSKV 278
L+ L L+ CY+PVS+++ + + +G+ P S + L + ++ ++ L+TP+K+
Sbjct: 329 LQKLRLLQSPCYNPVSFVKAK----LPTGKNFRIPLSVSERLKNHNVMSCHRALITPTKI 384
Query: 279 YFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGER--RTRIY 336
Y GPE+ +N VV+++ + +F+R++FV+ED KL + +S + R +T+IY
Sbjct: 385 YCLGPELETANYVVKNFAEYASDFMRVTFVEEDWSKLSANAISTGVHLGVFSRPFKTKIY 444
Query: 337 ERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNV 396
+R+LS L+NGIVIGDK+F+ LAFS SQ R N++WMFAS E+ A DIRE MG F++I+++
Sbjct: 445 DRILSILQNGIVIGDKRFKFLAFSASQLRSNSVWMFASNDEVKAEDIREWMGCFKKIRSI 504
Query: 397 TKYAARLGQSFASSREALHV----------------------DSNIGKISAELAETVAKK 434
+K A+R+GQ F+SS L V IGKIS A VA+K
Sbjct: 505 SKCASRMGQLFSSSMPTLVVPVQDVEIIDDIEVKTDGINYCFSDGIGKISLPFARQVAEK 564
Query: 435 CGYAIYTPSAFQIRYGGYK------------VTLRNNMFKYKSESTSLDILANSK----- 477
CG + PSAFQIRYGGYK ++LR++M K++S+ L++ S+
Sbjct: 565 CGLN-HIPSAFQIRYGGYKGVVAVDRNSFWKMSLRDSMLKFESKVRMLNVTKWSESMPCF 623
Query: 478 YQREGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELL 533
RE V D VFER Q E + L +LT+ + L+ + + N+L E+L
Sbjct: 624 LNREIVTLFSTLGIKDEVFERMQEEQLCLLGKMLTNREAALDTLQSLGGVNSKNILVEML 683
Query: 534 NCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ----- 588
+P+ +P+LSMM Q + + L +L++R RIF+ G+ ++GCLDE GTL YGQ
Sbjct: 684 QFD-EPNVQPYLSMMLQAHYENLLSDLKSRCRIFVPKGRILIGCLDETGTLNYGQVYLCI 742
Query: 589 --------------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHH--MVD 620
G +VV K PCLHPGD+RVL AV P L +VD
Sbjct: 743 KMKKAELECADQSYFRKVDEETAIVIGKVVVTKNPCLHPGDVRVLEAVYEPQLEEKGLVD 802
Query: 621 CVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIE 680
C++FP KGERPH NECSG D DG+ +F+ WD D IP P YT +I+ +VT+E
Sbjct: 803 CLVFPEKGERPHPNECSGGDLDGDQFFISWDKDLIPCQTEPPMDYTGRRPRIMDHEVTLE 862
Query: 681 DVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATI 740
+++++F DY++ND+LG I AH+V+A EP KA S C L L S+ DF+KTG A +
Sbjct: 863 EIQKFFVDYMINDTLGAISTAHLVHADREPYKARSENCLALATLHSMAVDFAKTGAPAEM 922
Query: 741 PSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKS---FAKEGAMQFYD 797
P L+ + +PDFM++ +K Y S ++G LYR ST I+S + KE A YD
Sbjct: 923 PRALKPREFPDFMQRGNKPMYTSSGVLGKLYR---ATINSTVQIRSKFVWTKEMAELAYD 979
Query: 798 TDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSF--DKK 855
D+EVNGF+ + + ++ Y+ ++ LM YY ++ E E+L+ + A+ D +
Sbjct: 980 HDLEVNGFESLISVAE--THKEMYEERMSLLMSYYDVEYEDEILTGNMYNKAQFLLRDNR 1037
Query: 856 R---DLEAISFSVRSLRKEARAWFNKKKNDSDSSHK 888
R E I SV+ L++EA+ WF + +D K
Sbjct: 1038 RYGEMKERIVLSVKDLQREAKEWFKSSCSKADEHQK 1073
>gi|356513586|ref|XP_003525493.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Glycine max]
Length = 1262
Score = 460 bits (1184), Expect = e-126, Method: Compositional matrix adjust.
Identities = 296/847 (34%), Positives = 445/847 (52%), Gaps = 145/847 (17%)
Query: 167 SIGQSSAICLELPSRALIPKALKDFFHYKESLVQFTLLPGFVFSCNSDL------NQDGK 220
SIG S++ C E+ L K F YKE+L L G F +++ K
Sbjct: 227 SIGHSTSFCWEIVEEHLALDVFKSFPLYKENLRDLALEDGEEFCSSTEAVPLVKRASQSK 286
Query: 221 HALEMLFHLRE----------------------------------------CCYDPVSWL 240
E LF L CY+P+ ++
Sbjct: 287 LPYEALFQLNSLVHTQKISLASVDDELIDLLAGLDEETRAVIFLKLHKMSFTCYEPLKFV 346
Query: 241 REQYRKHVSSGQ---FPTSPAVAL-DGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYP 296
+ Q HV S + P S L D ++ ++ L+TP+K+Y GPE+ SN VV+ +
Sbjct: 347 KTQL--HVLSNKKKGLPQSSQKRLTDSNIMSCHRALITPTKIYCLGPELETSNHVVKHFA 404
Query: 297 DEIDNFLRLSFVDEDLGKLYSTVLSPQISST--NGERRTRIYERVLSTLRNGIVIGDKKF 354
+F+R++FV+E+ KL + +S + + +T IY+R+L+ LR+GIVIG K+F
Sbjct: 405 SHASDFMRITFVEENWNKLPTNAVSTGVQKGLFSKPLKTEIYKRILTILRDGIVIGSKRF 464
Query: 355 ETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREAL 414
E LAFS SQ R N++W+FAS L AADIRE MG F I++V+K AAR+GQ F+SS +
Sbjct: 465 EFLAFSASQLRSNSVWLFASNDNLKAADIREWMGCFNNIRSVSKCAARMGQLFSSSMQTF 524
Query: 415 HVDSN----------------------IGKISAELAETVAKKCGYAIYTPSAFQIRYGGY 452
V S IGKIS A VA+K +TPSAFQIRYGG+
Sbjct: 525 EVVSQDVEIIPDVEVISDGVSYCFSDGIGKISQSFARQVAQKLKLD-HTPSAFQIRYGGF 583
Query: 453 ------------KVTLRNNMFKYKSESTSLDILANSK-----YQREGVARLRL----DNV 491
K++LR++M K++S+++ L + S+ RE ++ L D V
Sbjct: 584 KGVIAVDRRSFRKLSLRSSMLKFESKNSMLCVTKWSESMPCFLNREIISLLSTLGVKDEV 643
Query: 492 FERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQT 551
Q + + L +LTDS E LE ++ A++ ++L ++L+ +P++EP+LSMM +
Sbjct: 644 LLAMQHDQLDLLGRMLTDSKAALEVLESLNGADSKSILVKMLHEFNEPNSEPYLSMMLKA 703
Query: 552 FHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ----------------------- 588
++A L +L++R RIF+ G+ ++GCLDE G L YGQ
Sbjct: 704 YYAYQLSDLKSRCRIFVPKGRVLVGCLDETGLLNYGQVFVRITVTKTREKFGDENLRKVD 763
Query: 589 ---------GLMVVAKKPCLHPGDMRVLRAVDVPALHH--MVDCVLFPAKGERPHTNECS 637
G +VV K PCLHPGD+RVL A+ L + DC++FP KG RPH NECS
Sbjct: 764 GDDNTCIIVGKVVVTKNPCLHPGDIRVLDAIYSEELEEKGLRDCLVFPQKGHRPHPNECS 823
Query: 638 GSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGI 697
G D DG+++F+ WD D IP P YT +I+ VT+E+++++F DY++ND+LG
Sbjct: 824 GGDLDGDLFFISWDKDLIPCQTEAPMDYTGRRPRIMDHKVTLEEIQQFFVDYMINDTLGA 883
Query: 698 ICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQD 757
I AH+V+A E DKA S +C +L +L S+ DF+KTG A +P L+ + +PDFME+ D
Sbjct: 884 ISTAHLVHADREQDKAKSRKCLELAELHSMAVDFAKTGAPAAMPRVLKPREFPDFMERVD 943
Query: 758 KTWYESQHIVGNLYREVNGIAPSTTTIK---SFAKEGAMQFYDTDMEVNGFKEVAMQFDG 814
K Y S+ ++G LYR I S I+ ++++ A + YD +EVNGF+ A
Sbjct: 944 KPMYISKGVLGKLYR---AIIESQMQIRYSFVWSEKHAEEAYDRSLEVNGFE--AFLETA 998
Query: 815 FKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSF--DKKR--DL-EAISFSVRSLR 869
++ Y K+ +LMD+YG +TE EML + A D +R D+ + I SV++L+
Sbjct: 999 STHKEMYAEKMSSLMDFYGAETEDEMLLGNLQNRASYLQRDNRRYGDMKDRILLSVKNLQ 1058
Query: 870 KEARAWF 876
+EA+ WF
Sbjct: 1059 REAKEWF 1065
>gi|297809335|ref|XP_002872551.1| RNA-dependent RNA polymerase 2 [Arabidopsis lyrata subsp. lyrata]
gi|297318388|gb|EFH48810.1| RNA-dependent RNA polymerase 2 [Arabidopsis lyrata subsp. lyrata]
Length = 1134
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 279/755 (36%), Positives = 410/755 (54%), Gaps = 99/755 (13%)
Query: 223 LEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVA----LDGGLIYVNKILVTPSKV 278
L+ L CYDP+ +++ Q + V + SPA A + ++ + VTPSK+
Sbjct: 335 LKKLHQQSSICYDPLFFVKTQMQSVVK--KMKHSPASAYKRLTEQNIMSCQRAYVTPSKI 392
Query: 279 YFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNG----ERRTR 334
Y GPE+ +N VV+++ + + +F+R++FV+ED KL + L+ ++S G RT
Sbjct: 393 YLLGPELETANYVVKNFAEHVSDFMRVTFVEEDWSKLPANALT--VNSKEGYFVKPFRTN 450
Query: 335 IYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIK 394
IY RVLS L GI +G K+FE LAFS SQ R N++WMFAS ++ A DIRE MG FR+I+
Sbjct: 451 IYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVWMFASNEKIKAEDIREWMGCFRKIR 510
Query: 395 NVTKYAARLGQSFASSREALHVDSN----------------------IGKISAELAETVA 432
+++K AAR+GQ F++SR+ L+V + IGKIS A+ VA
Sbjct: 511 SISKCAARMGQLFSASRQTLNVRAQDVEQIPDIEVTTDGADYCFSDGIGKISLAFAKQVA 570
Query: 433 KKCGYAIYTPSAFQIRYGGY------------KVTLRNNMFKYKSESTSLDILANSK--- 477
+KCG + + PSAFQIRYGGY K++LR++M K+ S + L++ ++
Sbjct: 571 QKCGLS-HVPSAFQIRYGGYKGVIAVDRSSFRKMSLRDSMLKFDSNNRMLNVTRWTESMP 629
Query: 478 --YQREGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKE 531
RE + L D VFE Q ++ L +L D L+ +S + N+L +
Sbjct: 630 CFLNREIICLLSTLGIEDAVFEAMQAVHLSMLGNMLEDRDAALNVLQKLSGENSKNLLVK 689
Query: 532 LLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ--- 588
+L GY P +EP+LSMM + H S L EL++R RI + G+ ++GC+DE G LEYGQ
Sbjct: 690 MLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRILVPKGRILIGCMDEMGILEYGQVFV 749
Query: 589 ----------------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHH--M 618
G +VV K PCLHPGD+RVL A+
Sbjct: 750 RVTLTKAELKSREQSYFHKIDEETSVVIGKVVVTKNPCLHPGDIRVLDAIYEVNFEEKGF 809
Query: 619 VDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVT 678
+DC++FP KGERPH NECSG D DG+ +FV WD IP P Y + +I+ DVT
Sbjct: 810 LDCIIFPQKGERPHPNECSGGDLDGDQFFVSWDEKLIPSQMDPPMDYAGSRPRIMDHDVT 869
Query: 679 IEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAA 738
+E++ ++F DY+++D+LG+I AH+V+A +P+KA S +C +L L S DF+KTG A
Sbjct: 870 LEEIHKFFVDYMISDTLGVISTAHLVHADRDPEKARSQKCLELANLHSRAVDFAKTGAPA 929
Query: 739 TIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDT 798
+P L+ + +PDF+E+ +K Y S+ + G LYR V S K A+ YD
Sbjct: 930 EMPYALKPREFPDFLERFEKPTYISESVFGKLYRAVRS---SLAQRKPEAESDGTLTYDA 986
Query: 799 DMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCI--MEMAKSFDKKR 856
+E GF+ +R Y KL +LM YYG E E+L+ + EM + D +R
Sbjct: 987 TLEEAGFESFIETAKA--HRDMYAEKLTSLMIYYGAVNEEEILTGILKTKEMYLARDNRR 1044
Query: 857 --DL-EAISFSVRSLRKEARAWFNKKKNDSDSSHK 888
D+ + I+ SV+ L KEA WF+K D K
Sbjct: 1045 YGDMKDRITLSVKDLHKEAMGWFDKSCEDEQQKKK 1079
>gi|15237051|ref|NP_192851.1| RNA-dependent RNA polymerase 2 [Arabidopsis thaliana]
gi|75318859|sp|O82504.1|RDR2_ARATH RecName: Full=RNA-dependent RNA polymerase 2; Short=AtRDRP2; AltName:
Full=Protein SILENCING MOVEMENT DEFICIENT 1; AltName:
Full=RNA-directed RNA polymerase 2
gi|3600048|gb|AAC35535.1| similar to hypothetical proteins in Schizosaccharomyces pombe
(GB:Z98533) and C. elegans (GB:Z48334 and Z78419)
[Arabidopsis thaliana]
gi|4850292|emb|CAB43048.1| putative RNA-directed RNA polymerase [Arabidopsis thaliana]
gi|7267812|emb|CAB81214.1| putative RNA-directed RNA polymerase [Arabidopsis thaliana]
gi|332657576|gb|AEE82976.1| RNA-dependent RNA polymerase 2 [Arabidopsis thaliana]
Length = 1133
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 279/755 (36%), Positives = 408/755 (54%), Gaps = 99/755 (13%)
Query: 223 LEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVA----LDGGLIYVNKILVTPSKV 278
L+ L CYDPV +++ Q + V + SPA A + ++ + VTPSK+
Sbjct: 334 LKKLHQQSSICYDPVFFVKTQMQSVVK--KMKHSPASAYKRLTEQNIMSCQRAYVTPSKI 391
Query: 279 YFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNG----ERRTR 334
Y GPE+ +N VV+++ + + +F+R++FV+ED KL + LS ++S G RT
Sbjct: 392 YLLGPELETANYVVKNFAEHVSDFMRVTFVEEDWSKLPANALS--VNSKEGYFVKPSRTN 449
Query: 335 IYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIK 394
IY RVLS L GI +G K+FE LAFS SQ R N++WMFAS ++ A DIRE MG FR+I+
Sbjct: 450 IYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVWMFASNEKVKAEDIREWMGCFRKIR 509
Query: 395 NVTKYAARLGQSFASSREALHVDSN----------------------IGKISAELAETVA 432
+++K AAR+GQ F++SR+ L V + IGKIS A+ VA
Sbjct: 510 SISKCAARMGQLFSASRQTLIVRAQDVEQIPDIEVTTDGADYCFSDGIGKISLAFAKQVA 569
Query: 433 KKCGYAIYTPSAFQIRYGGY------------KVTLRNNMFKYKSESTSLDILANSK--- 477
+KCG + + PSAFQIRYGGY K++LR++M K+ S + L++ ++
Sbjct: 570 QKCGLS-HVPSAFQIRYGGYKGVIAVDRSSFRKLSLRDSMLKFDSNNRMLNVTRWTESMP 628
Query: 478 --YQREGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKE 531
RE + L D +FE Q ++ L +L D L+ +S + N+L +
Sbjct: 629 CFLNREIICLLSTLGIEDAMFEAMQAVHLSMLGNMLEDRDAALNVLQKLSGENSKNLLVK 688
Query: 532 LLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ--- 588
+L GY P +EP+LSMM + H S L EL++R RI + G+ ++GC+DE G LEYGQ
Sbjct: 689 MLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRILVPKGRILIGCMDEMGILEYGQVYV 748
Query: 589 ----------------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHH--M 618
G +VV K PCLHPGD+RVL A+
Sbjct: 749 RVTLTKAELKSRDQSYFRKIDEETSVVIGKVVVTKNPCLHPGDIRVLDAIYEVHFEEKGY 808
Query: 619 VDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVT 678
+DC++FP KGERPH NECSG D DG+ +FV WD IP P Y + +++ DVT
Sbjct: 809 LDCIIFPQKGERPHPNECSGGDLDGDQFFVSWDEKIIPSEMDPPMDYAGSRPRLMDHDVT 868
Query: 679 IEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAA 738
+E++ ++F DY+++D+LG+I AH+V+A +P+KA S +C +L L S DF+KTG A
Sbjct: 869 LEEIHKFFVDYMISDTLGVISTAHLVHADRDPEKARSQKCLELANLHSRAVDFAKTGAPA 928
Query: 739 TIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDT 798
+P L+ + +PDF+E+ +K Y S+ + G LYR V S K A+ YD
Sbjct: 929 EMPYALKPREFPDFLERFEKPTYISESVFGKLYRAVKS---SLAQRKPEAESEDTVAYDV 985
Query: 799 DMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCI--MEMAKSFDKKR 856
+E GF+ +R Y KL +LM YYG E E+L+ + EM + D +R
Sbjct: 986 TLEEAGFESFIETAKA--HRDMYGEKLTSLMIYYGAANEEEILTGILKTKEMYLARDNRR 1043
Query: 857 --DL-EAISFSVRSLRKEARAWFNKKKNDSDSSHK 888
D+ + I+ SV+ L KEA WF K D K
Sbjct: 1044 YGDMKDRITLSVKDLHKEAMGWFEKSCEDEQQKKK 1078
>gi|356565022|ref|XP_003550744.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Glycine max]
Length = 1120
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 295/847 (34%), Positives = 449/847 (53%), Gaps = 145/847 (17%)
Query: 167 SIGQSSAICLELPSRALIPKALKDFFHYKESLVQFTL----------------------- 203
SIG S++ C E+ L F YKE+L L
Sbjct: 226 SIGHSTSFCWEIVEEHLASDVFTSFPLYKENLRDLALEDREELCSLTEAVPLVKHATQSK 285
Query: 204 LP-GFVFSCNS---------------------DLNQDGKHAL-EMLFHLRECCYDPVSWL 240
LP VF NS DL+++ + + + L + CY+P+ ++
Sbjct: 286 LPYEAVFQLNSLVHTQKISLASVDDELIDLLADLDEETRAVVFQKLHKMSFTCYEPLKFV 345
Query: 241 REQYRKHVSSGQ---FPTSPAVAL-DGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYP 296
+ Q HV S + SP L D ++ ++ L+TP+K+Y GPE+ SN VV+ +
Sbjct: 346 KTQL--HVLSNKKKGLLQSPQNRLTDSNIMSCHRALITPTKIYCLGPELETSNHVVKHFA 403
Query: 297 DEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGER--RTRIYERVLSTLRNGIVIGDKKF 354
+F+R++FV+E+ KL + +S + + +T IY+R+L+ LR+GIVIG K+F
Sbjct: 404 SLASDFMRITFVEENWNKLPTNAVSTGVQKGIFSKPLKTEIYKRILTILRDGIVIGSKRF 463
Query: 355 ETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREAL 414
E LAFS SQ R N++W+FAS L AADIRE MG F I++V+K AAR+GQ F+SS +
Sbjct: 464 EFLAFSASQLRSNSVWLFASNDNLKAADIREWMGCFNNIRSVSKCAARMGQLFSSSMQTF 523
Query: 415 HVDS----------------------NIGKISAELAETVAKKCGYAIYTPSAFQIRYGGY 452
V S IGKIS A VA+K +TPSAFQIRYGG+
Sbjct: 524 EVASEDVEMIPDIEVTSDGVSYCFSDGIGKISQCFARQVAQKLNLD-HTPSAFQIRYGGF 582
Query: 453 ------------KVTLRNNMFKYKSESTSLDILANSK-----YQREGVARLRL----DNV 491
K++LR++M K++S + L + S+ RE ++ L D V
Sbjct: 583 KGVIAIDRHSFRKLSLRSSMLKFESNNRMLCVTKWSESMPCFLNREIISLLTTLGVKDEV 642
Query: 492 FERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQT 551
Q++ + L +LTDS + LE ++ A++ ++L ++L+ +P++EP+LSMM +
Sbjct: 643 LLAMQQDQLDLLGRMLTDSKAALDVLESLNGADSKSILVKMLHEFNEPNSEPYLSMMLKA 702
Query: 552 FHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ----------------------- 588
++A L +L++R RIF+ G+ ++GCLDE G L YGQ
Sbjct: 703 YYAYQLSDLKSRCRIFVPKGRVLVGCLDETGLLNYGQVFVRITVAKTRENFGDENLRKVD 762
Query: 589 ---------GLMVVAKKPCLHPGDMRVLRAVDVPALHH--MVDCVLFPAKGERPHTNECS 637
G +VV K PCLHPGD+RVL A+ L + DC++FP KG RPH NECS
Sbjct: 763 GDDSTRIIVGKVVVTKNPCLHPGDIRVLDAIYSKELEENGLRDCLVFPQKGHRPHPNECS 822
Query: 638 GSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGI 697
G D DG+++F+ WD D IP P YT +I+ VT+E+++++F DY++ND+LG
Sbjct: 823 GGDLDGDLFFLSWDKDLIPCQTEAPMDYTGRRPRIMDHKVTLEEIQQFFVDYMINDTLGA 882
Query: 698 ICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQD 757
I AH+V+A E DKA S +C +L +L S+ DF+KTG A +P L+ + +PDFME+ D
Sbjct: 883 ISTAHLVHADREQDKAKSRKCLELAELHSMAVDFAKTGAPAAMPRVLKPREFPDFMERVD 942
Query: 758 KTWYESQHIVGNLYREVNGIAPSTTTIK---SFAKEGAMQFYDTDMEVNGFKEVAMQFDG 814
K Y S+ ++G LY + I S I+ ++++ A + YD +EVNGF+ A
Sbjct: 943 KPMYISKGVLGKLY---HAIIESQMQIRYSFVWSEKHAEEAYDRSLEVNGFE--AFLETA 997
Query: 815 FKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSF--DKKR--DL-EAISFSVRSLR 869
++ Y K+ +LMD+YG +TE EML + A D +R D+ + I SV++L+
Sbjct: 998 STHKEMYAEKMSSLMDFYGAETEDEMLLGNVQNRASYLQRDNRRYGDMKDRILLSVKNLQ 1057
Query: 870 KEARAWF 876
+EA+ WF
Sbjct: 1058 REAKEWF 1064
>gi|357477317|ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago truncatula]
gi|355509999|gb|AES91141.1| Rna-dependent RNA polymerase [Medicago truncatula]
Length = 1308
Score = 450 bits (1157), Expect = e-123, Method: Compositional matrix adjust.
Identities = 273/747 (36%), Positives = 408/747 (54%), Gaps = 101/747 (13%)
Query: 223 LEMLFHLRECCYDPVSWLREQYRKHVSSGQ----FPTSPAVALDGGLIYVNKILVTPSKV 278
+ L + CY+P+ ++R Q HV S + P+ +D ++ ++ L+TPSK+
Sbjct: 330 FQKLHKMNSTCYEPLKYVRTQL--HVLSIKKKSVLPSQQKRLVDNNIMSCHRALITPSKI 387
Query: 279 YFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGER--RTRIY 336
Y GPE+ SN VV+ + +F+R++FV+ED KL + +S + R RT IY
Sbjct: 388 YCLGPELETSNHVVKHFAAYASDFMRITFVEEDWSKLPNNAISITLKKGMFSRPLRTEIY 447
Query: 337 ERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNV 396
+RVL+ LR+GI+IG K+FE LAFS SQ R N++W+FAS ++ AADIRE MG F I++V
Sbjct: 448 KRVLNILRDGILIGSKRFEFLAFSASQLRSNSVWLFASNDKVKAADIREWMGSFNNIRSV 507
Query: 397 TKYAARLGQSFASSREALHV----------------------DSNIGKISAELAETVAKK 434
+K AAR+GQ F+SSR+ + IGKIS A +A+K
Sbjct: 508 SKCAARMGQLFSSSRQTFEMAPQDVDLIPDIEITSDGIDYCFSDGIGKISQSFARQLAEK 567
Query: 435 CGY-AIYTPSAFQIRYGGY------------KVTLRNNMFKYKSESTSLDILANSK---- 477
PSAFQIRYGGY K++LR +M K++S++ L + S+
Sbjct: 568 LKLDENRIPSAFQIRYGGYKGVIAVDRHSFKKLSLRKSMLKFESKNRMLCVTKWSESMPC 627
Query: 478 -YQREGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKEL 532
RE ++ L D Q + + L +LTD + LE ++ A++ ++L ++
Sbjct: 628 FLNREIISLLSTLGIKDEALLALQEDQLQLLGKMLTDKEAALDVLESLNGADSNSILVKM 687
Query: 533 LNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ---- 588
L+ Y+P++EP+LSMM + + L +L++R RIF+ G+ ++GCLDE G L YGQ
Sbjct: 688 LHRFYEPNSEPYLSMMLKAHYTYQLSDLKSRCRIFVPKGRVLIGCLDETGLLNYGQVFVR 747
Query: 589 ----------------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHH--M 618
G +VV K PCLHPGD+RVL AV L +
Sbjct: 748 ITVAKTKEKFGDENLRNVDGDDSTRIIVGKVVVTKNPCLHPGDIRVLDAVYSEELEEKGL 807
Query: 619 VDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVT 678
DC++FP KG RPH NECSG D DG+++F+ WD D IP P YT +I+ VT
Sbjct: 808 RDCLVFPQKGHRPHPNECSGGDLDGDLFFISWDKDLIPAQTENPMDYTGRRPRIMDHKVT 867
Query: 679 IEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAA 738
+E++ ++F DY++ND+LG I AH+V+A E DKA S +C +L +L S+ DF+KTG A
Sbjct: 868 LEEIHQFFVDYMINDTLGAISTAHLVHADREHDKAKSRKCLELAELHSMAVDFAKTGAPA 927
Query: 739 TIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNG----IAPSTTTIKSFAKEGAMQ 794
+P L+ + +PDFME+ +K Y S+ ++G LYR + + FAKE
Sbjct: 928 EMPRSLKPREFPDFMERFEKPMYISKGVLGKLYRATIDSNLQVRFDMVMSEKFAKEA--- 984
Query: 795 FYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSF-- 852
YD +EV+GF EV ++ +R Y K+ +LM +YG TE EML+ + A
Sbjct: 985 -YDHQLEVDGF-EVFLE-TALSHRDMYAQKMISLMSFYGATTEDEMLTGNLQNRASYLQR 1041
Query: 853 DKKR--DL-EAISFSVRSLRKEARAWF 876
D +R D+ + I SV+ L+ EA+ WF
Sbjct: 1042 DNRRYGDMKDRILISVKDLQLEAKEWF 1068
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 66/103 (64%)
Query: 672 ILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDF 731
IL + + ++F DY++ D+LG I AH+V+A E +KA S +C +L +L S+ DF
Sbjct: 1110 ILLHIKSANKIHKFFVDYMIKDTLGAISTAHLVHADCESNKAKSRKCLELAELHSMAVDF 1169
Query: 732 SKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREV 774
+KTG A +P L+ K +PDFME+ +K Y S+ ++G LYR +
Sbjct: 1170 AKTGALAEMPRVLKPKEFPDFMERFEKPMYVSKGVLGKLYRAL 1212
>gi|115448543|ref|NP_001048051.1| Os02g0736200 [Oryza sativa Japonica Group]
gi|113537582|dbj|BAF09965.1| Os02g0736200, partial [Oryza sativa Japonica Group]
Length = 476
Score = 447 bits (1150), Expect = e-122, Method: Compositional matrix adjust.
Identities = 235/440 (53%), Positives = 294/440 (66%), Gaps = 58/440 (13%)
Query: 276 SKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRI 335
S VYF GPEI++SNRVVR++ +I+NFLR+SFVDED KL +T LSP+ +S + RT +
Sbjct: 34 STVYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASGHDANRTAL 93
Query: 336 YERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKN 395
Y+RVLS L +GI IG K FE LAFS+SQ R+N+ WMFASR L A+DIR MGDFR I+N
Sbjct: 94 YKRVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRN 153
Query: 396 VTKYAARLGQSFASSREAL------------------HVDSN-IGKISAELAETVAKKCG 436
V KYAARLGQSF+SS E L HV S+ IGKIS+ A VA KC
Sbjct: 154 VAKYAARLGQSFSSSTETLKVQKYEVEEISDIKNGTQHVFSDGIGKISSAFANEVAMKCN 213
Query: 437 YAIYTPSAFQIRYGGY------------KVTLRNNMFKYKSESTSLDILANSKYQ----- 479
+ PSAFQIRYGGY K++LR +M K++S++ ++D+LA SKYQ
Sbjct: 214 LKRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQPGFLN 273
Query: 480 REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNC 535
R+ + L D+VFE+KQ E V +L+ ++TD EA+ELM E TN +KELL C
Sbjct: 274 RQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKELLLC 333
Query: 536 GYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ------- 588
GY+PD EP+LSM+ QTF AS LLEL+T++RI I G+AMMGCLDE TL+YGQ
Sbjct: 334 GYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIRATS 393
Query: 589 -----------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECS 637
G +V+AK PCLHPGD+R+L AVDVP LHHM +CV+FP +G RPH NECS
Sbjct: 394 GVNDNDRFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHMFNCVVFPQQGPRPHPNECS 453
Query: 638 GSDQDGEIYFVCWDHDRIPP 657
GSD DG+IYFV WD IPP
Sbjct: 454 GSDLDGDIYFVSWDPSLIPP 473
>gi|326493668|dbj|BAJ85295.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1127
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 281/747 (37%), Positives = 393/747 (52%), Gaps = 93/747 (12%)
Query: 220 KHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVY 279
+ E + L CY+P+ +++++ S S +G L+ +I +TPSK+Y
Sbjct: 328 RRIFEKMSKLEFTCYEPLQFIQQEAHSRKRSHDALLSSKTEGEGKLMMCYRIHITPSKIY 387
Query: 280 FCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST--NGERRTRIYE 337
GPE +SN VV+ + +F R++FVDED KL+ +S + + +T +Y
Sbjct: 388 CLGPEEEVSNYVVKHHKQYASDFTRVTFVDEDWSKLFPDAISARTGRGFFSQPLKTGLYY 447
Query: 338 RVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVT 397
R+LS L+ G IG KK+E LAFS SQ R +++WMFAS L A DIR MG+F EI++V+
Sbjct: 448 RILSILKEGFSIGPKKYEFLAFSASQLRGSSVWMFASNDSLKAEDIRRWMGNFEEIRSVS 507
Query: 398 KYAARLGQSFASSREALHV----------------------DSNIGKISAELAETVAKKC 435
K AAR+GQ F+SSR+ L + IGKIS A+ +A +
Sbjct: 508 KCAARMGQLFSSSRQTLDILPRDVEEIPDIEVTTDGTKYIFSDGIGKISERFAKEMACRI 567
Query: 436 GYAIYT--PSAFQIRYGGYK------------VTLRNNMFKYKSESTSLDILANSKYQ-- 479
G YT PSAFQIRYGGYK ++LR +M K++S+S +I + SK Q
Sbjct: 568 GLD-YTNPPSAFQIRYGGYKGVVAVDPDSFRNLSLRPSMKKFESKSRMFNITSTSKSQPC 626
Query: 480 ---REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKEL 532
RE ++ L D +FE Q+ + LD +LT+ L + SAE K L
Sbjct: 627 YMNREIISLLSTLGIRDEIFELMQQHDMRELDEMLTNREAALSVLGKIGSAETKTASKIL 686
Query: 533 LNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ---- 588
L GY+P EP+L M+ + + L ++RTR +I + G+ ++GCLDE G LEYGQ
Sbjct: 687 LQ-GYEPSLEPYLLMILKAHQDNRLTDIRTRCKIHVPKGRVLIGCLDETGELEYGQVYIR 745
Query: 589 -----------------------------GLMVVAKKPCLHPGDMRVLRAVDVPALH--H 617
G + V+K PCLHPGD+RVL AV L+ +
Sbjct: 746 ITKNSKEQKDNCQPYFSEDNGKDKTAVVVGKVAVSKNPCLHPGDIRVLEAVYDHGLYSKN 805
Query: 618 MVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDV 677
+VDCV+FP +GERPH NECSG D DG++YF+ WD IP P YT A +I+ V
Sbjct: 806 LVDCVVFPQRGERPHPNECSGGDLDGDLYFITWDEKLIPEKVDSPMDYTAARPRIMDHVV 865
Query: 678 TIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVA 737
T+E++++YF DY++NDSLG I AH+V+A P KA S C L L S+ DF+K+G
Sbjct: 866 TLEEIQKYFVDYMINDSLGAISTAHLVHADRHPMKARSPECLQLAALHSMAVDFAKSGAP 925
Query: 738 ATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYD 797
A +P LR K YPDFME+ DK Y S +G LYR S S A+ + +D
Sbjct: 926 AEMPRSLRPKEYPDFMERWDKPTYISNGPLGKLYRAAASRMQSAPAPSSSAQ--PIPAFD 983
Query: 798 TDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIME--MAKSFDKK 855
D+EV GF+E + + + Y KL LM YYG + E E+L+ I + D K
Sbjct: 984 PDLEVPGFEEFLVSAE--ECYDLYAEKLSTLMSYYGTEHEDEILTGNIRNRLLYLKKDNK 1041
Query: 856 RDLEA---ISFSVRSLRKEARAWFNKK 879
R E I SV L KE R WF +
Sbjct: 1042 RYFEMKDRIIDSVEGLHKEVRGWFTSR 1068
>gi|242073398|ref|XP_002446635.1| hypothetical protein SORBIDRAFT_06g019330 [Sorghum bicolor]
gi|241937818|gb|EES10963.1| hypothetical protein SORBIDRAFT_06g019330 [Sorghum bicolor]
Length = 1128
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 276/753 (36%), Positives = 396/753 (52%), Gaps = 96/753 (12%)
Query: 220 KHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGG-LIYVNKILVTPSKV 278
+ E + L+ CY+P+ ++R + H S + DGG L+ +I +TPSK+
Sbjct: 328 RRIFEKMSKLKSTCYEPLQFIRHE--AHSMSKSKKAFLSNKKDGGKLMRCYRIHITPSKI 385
Query: 279 YFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST--NGERRTRIY 336
Y GPE +SN VV+ + + +F R++FVDED KL LS + + +T +Y
Sbjct: 386 YCLGPEEEVSNYVVKYHSEYASDFARVTFVDEDWSKLSPNALSARTEQGFFSTPLKTGLY 445
Query: 337 ERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNV 396
R+LS L+ G IG KK+E LAFS SQ R N++WMFAS LTA IR MG F +I++V
Sbjct: 446 HRILSILKEGFCIGPKKYEFLAFSASQLRGNSVWMFASNNSLTAESIRRWMGHFEDIRSV 505
Query: 397 TKYAARLGQSFASSREALHVDS----------------------NIGKISAELAETVAKK 434
+K AAR+GQ F+SSR+ + S IGKIS A +AK
Sbjct: 506 SKCAARMGQLFSSSRQTFEISSYDVEVIPDIEVTSDGTKYIFSDGIGKISTRFARQIAKL 565
Query: 435 CGY-AIYTPSAFQIRYGGYK------------VTLRNNMFKYKSESTSLDILANSKYQ-- 479
G + PSAFQIRYGGYK ++LR +M K++S+ST L+I SK Q
Sbjct: 566 FGLDPAHPPSAFQIRYGGYKGVITIDPTSFFNLSLRPSMKKFESKSTMLNITNWSKSQPC 625
Query: 480 ---REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKEL 532
RE ++ L D VFE Q++ + D +LT+ L + A +T E+
Sbjct: 626 YVNREIISLLSTLGIKDEVFESMQQDDMHESDGMLTNKEAALSVLGKIGGA-DTKTASEM 684
Query: 533 LNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ---- 588
+ GY+P +EP+L M+ + A+ L ++RTR +I +Q G+ ++GCLDE TL+YGQ
Sbjct: 685 VLQGYEPSSEPYLLMILKAHRANRLTDIRTRCKIHVQKGRVLIGCLDETCTLDYGQVYIR 744
Query: 589 ---------------------------GLMVVAKKPCLHPGDMRVLRAVDVPAL--HHMV 619
G + V K PCLHPGD+RVL AV PAL ++
Sbjct: 745 ITKNRKEQKYSEQPFFCNDDGKTAVIVGKVAVTKNPCLHPGDVRVLEAVYDPALDARGLI 804
Query: 620 DCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTI 679
DCV+FP +GERPH NECSG D DG+++F+ WD IP P YT +I+ VT+
Sbjct: 805 DCVVFPQRGERPHPNECSGGDLDGDLFFITWDDKLIPEKVDAPMDYTATRPRIMDHAVTL 864
Query: 680 EDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAAT 739
E+++++F +Y++ND+LG+I AH+++A P KA S C L L S+ DF+KTG A
Sbjct: 865 EEIQKHFVNYMINDALGVISTAHLIHADRNPLKARSPECLQLAALHSMAVDFAKTGAPAE 924
Query: 740 IPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQ-FYDT 798
+P LR + +PDFME+ ++ Y S ++G LYR ++ G + YD
Sbjct: 925 MPVALRPREFPDFMERWERPMYVSTSVLGKLYR---AALRHEENAEALLPAGPPRCVYDP 981
Query: 799 DMEVNGFKEVAMQFDGFKYRTE-YDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSF--DKK 855
D+EV GF + D + + E Y KLG LM YY + E E+L+ I D K
Sbjct: 982 DLEVAGFDKF---LDTAEEQYEVYAEKLGTLMTYYSAEHEDEILTGNIRNKLVYLRRDNK 1038
Query: 856 RDLEA---ISFSVRSLRKEARAWFNKKKNDSDS 885
R E I +V +L E R W +K D S
Sbjct: 1039 RYFEMKDRIIAAVDALHAEVRGWLRARKEDDAS 1071
>gi|357466249|ref|XP_003603409.1| Rna-dependent RNA polymerase [Medicago truncatula]
gi|355492457|gb|AES73660.1| Rna-dependent RNA polymerase [Medicago truncatula]
Length = 1188
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 259/702 (36%), Positives = 384/702 (54%), Gaps = 89/702 (12%)
Query: 265 LIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKL-------YS 317
++ V +++VTP+K Y PE+ LSNRV+R + + D FLR++F+DE L Y
Sbjct: 397 VMEVRRLVVTPTKAYCISPEVELSNRVLRRFREVSDRFLRVTFMDEGQQTLNNYALNYYV 456
Query: 318 TVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE 377
+ +I+S + +++TRIY+RV + L +G +K+ LAFS++Q R+ + W FA +
Sbjct: 457 APIVKEITSNSFQQKTRIYKRVKTILDDGFYFCGRKYSFLAFSSNQLRDRSAWFFAEDKD 516
Query: 378 LTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN------------------ 419
+T DIR MG F + KNV K AAR+GQ F+S+ ++ V +N
Sbjct: 517 ITCDDIRNWMGRFNQ-KNVAKCAARMGQCFSSTYASVEVPANEVNSMLPDVERNNYVFSD 575
Query: 420 -IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK--------------VTLRNNMFKYK 464
IG I+ +LA VA+K PSA+QIRY G+K ++LR +M K++
Sbjct: 576 GIGIITTDLAVEVAEKLKLD-KAPSAYQIRYAGFKGVVACWPAKGDGIKLSLRPSMNKFQ 634
Query: 465 SESTSLDILANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQE 515
S T+L+I A +++Q R+ + L D +F + Q +++ L+ +L D +
Sbjct: 635 STHTTLEICAWTRFQPGFLNRQIITLLSALDVPDEIFWKMQEGMISSLNQMLVDRDVAYD 694
Query: 516 ALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMM 575
L S AE+ N +L+CG+ P EP L M + A+ L LR ++RIF+ +G+ +M
Sbjct: 695 VLT-KSCAEHGNAAAIMLSCGFSPKTEPHLRGMLNSIRAAQLWGLREKSRIFVSSGRWLM 753
Query: 576 GCLDEKGTLEYGQ-------------------------------GLMVVAKKPCLHPGDM 604
G LDE G LE GQ G++V+AK PCLHPGD+
Sbjct: 754 GVLDELGVLEQGQCFVQVSTPSLENCFSKHGSRFSETKTVHVVKGIVVIAKNPCLHPGDV 813
Query: 605 RVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ--FQP 662
RVL AVDVP LHH+ DCV+FP KGERPHT+E SGSD DG++YFV WD + IPP + + P
Sbjct: 814 RVLEAVDVPDLHHLYDCVVFPQKGERPHTDEASGSDLDGDLYFVTWDGNLIPPSKRSWPP 873
Query: 663 TAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLV 722
Y ++ R VT++D+ ++F +VN+ LG ICNAHVV+A S A+ C L
Sbjct: 874 MEYAAQESRLQTRQVTVQDIIDFFVRNMVNEQLGSICNAHVVHADSSDYGALDENCVHLA 933
Query: 723 KLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTT 782
+L++ DF KTG T+PS L+ K+YPDFM K+ Y+S+ I+G LYR +
Sbjct: 934 ELAATAVDFPKTGKLVTMPSNLKPKLYPDFMGKEHHQSYKSKKILGRLYRRIKDAYDKDI 993
Query: 783 TIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLS 842
F + YDTD+EV G E D ++ R YD +L L+ Y +KTE E+++
Sbjct: 994 DAPEFNCVSSDILYDTDLEVPGSSEFIA--DAWEQRCSYDGQLSGLLGQYKVKTEEEVVT 1051
Query: 843 RCIMEMAKSFDKKRD--LEAISFSVRSLRKEARAWFNKKKND 882
I M K +K+ E + S +L+KE R F K K+D
Sbjct: 1052 GQIWSMPKYNSRKQGELKERLKHSYSALKKEFRQIFEKLKSD 1093
>gi|308080784|ref|NP_001183867.1| uncharacterized protein LOC100502460 [Zea mays]
gi|89473792|gb|ABD72708.1| RNA-dependent RNA polymerase [Zea mays]
gi|374257933|gb|AEZ01781.1| RNA-dependent DNA polymerase [Zea mays]
gi|414586834|tpg|DAA37405.1| TPA: mediator of paramutation1 [Zea mays]
Length = 1127
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 278/769 (36%), Positives = 396/769 (51%), Gaps = 104/769 (13%)
Query: 208 VFSCNSDLNQDG-KHALEMLFHLRECCYDPVSWLREQ-----YRKHVSSGQFPTSPAVAL 261
+F DL+ D + E + L+ CY+P+ ++R + RK S + +
Sbjct: 315 LFKVLEDLSIDTLRRIFEKMSKLKSTCYEPLQFIRHEAHSMNMRKKALSNKRES------ 368
Query: 262 DGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLS 321
G L+ +I +TPSK+Y GPE +SN VV+ + + +F R++FVDED KL LS
Sbjct: 369 -GKLMRCYRIHITPSKIYCLGPEEEVSNYVVKYHSEYASDFARVTFVDEDWSKLSPNALS 427
Query: 322 PQISST--NGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELT 379
+ + +T +Y R+LS L+ G IG KK+E LAFS SQ R N++WMFAS LT
Sbjct: 428 ARTEQGFFSKPLKTGLYHRILSILKEGFCIGPKKYEFLAFSASQLRGNSVWMFASNSSLT 487
Query: 380 AADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDS--------------------- 418
A +IR MG F +I++V+K AAR+GQ F+SSR+ V S
Sbjct: 488 AENIRRWMGHFEDIRSVSKCAARMGQLFSSSRQTFEVSSYDVEVIPDIEVTTDGTKYIFS 547
Query: 419 -NIGKISAELAETVAKKCGY-AIYTPSAFQIRYGGYK------------VTLRNNMFKYK 464
IGKIS A VAK G + PSAFQIRYGGYK ++LR +M K++
Sbjct: 548 DGIGKISTRFARQVAKLIGLDPAHPPSAFQIRYGGYKGVITIDPTSFFNLSLRPSMKKFE 607
Query: 465 SESTSLDILANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQE 515
S+ST L+I SK Q RE ++ L D VFE Q++ + D +LT+
Sbjct: 608 SKSTMLNITNWSKSQPCYVNREIISLLSTLGIKDEVFESMQQDDMHESDGMLTNKEAALS 667
Query: 516 ALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMM 575
L + +T ++L GY+P +EP+L M+ + A+ L ++RTR +I +Q G+ ++
Sbjct: 668 VLGKIGGG-DTKTAADMLLQGYEPSSEPYLLMILKAHRANRLTDIRTRCKIHVQKGRVLI 726
Query: 576 GCLDEKGTLEYGQ-------------------------------GLMVVAKKPCLHPGDM 604
GCLDE LEYGQ G + + K PCLHPGD+
Sbjct: 727 GCLDETCKLEYGQVYIRITKNHKEQKYSEQPFFCNDDGKTAVIVGKVAITKNPCLHPGDV 786
Query: 605 RVLRAVDVPAL--HHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQP 662
RVL AV P L ++DCV+FP +GERPH NECSG D DG+++F+ WD IP P
Sbjct: 787 RVLEAVYDPGLDARGLIDCVVFPQRGERPHPNECSGGDLDGDLFFITWDDKLIPEKVDAP 846
Query: 663 TAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLV 722
YT +I+ VT+E+++++F Y++ND+LG I AH+++A +P KA S C L
Sbjct: 847 MDYTATRPRIMDHAVTLEEIQKHFVSYMINDTLGAISTAHLIHADRDPLKARSPECVQLA 906
Query: 723 KLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTT 782
L S+ DF+KTG A +P LR + +PDFME+ ++ Y S ++G LYR
Sbjct: 907 ALHSMAVDFAKTGAPAEMPLALRPREFPDFMERWERPMYVSNGVLGKLYRAALRHEEDAE 966
Query: 783 TIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTE-YDNKLGNLMDYYGIKTEAEML 841
+ + YD D+EV GF E D + R E Y +LG LM YY + E E+L
Sbjct: 967 ALLPAGPPSCV--YDPDLEVAGFDEF---LDAAEERYEAYAERLGALMTYYSAEREDEIL 1021
Query: 842 SRCIMEMAKSF--DKKRDLEA---ISFSVRSLRKEARAWFNKKKNDSDS 885
+ I D KR E I +V +L E R W K D S
Sbjct: 1022 TGNIRNKLVYLRRDNKRYFEMKDRIIAAVDALHAEVRGWLRACKEDDAS 1070
>gi|357164043|ref|XP_003579930.1| PREDICTED: probable RNA-dependent RNA polymerase 2-like [Brachypodium
distachyon]
Length = 1140
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 270/741 (36%), Positives = 398/741 (53%), Gaps = 92/741 (12%)
Query: 220 KHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVY 279
+ E + L CY+P+ ++ + + ++ +S +G L+ +I +TPSK+Y
Sbjct: 328 RRIFEKMSKLESTCYEPLQFIESELK--LTHNALLSSKREG-EGKLMRCYRIHITPSKIY 384
Query: 280 FCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST--NGERRTRIYE 337
GPE SN VV+ + + +F+R++FVDED KL +S +I + +T +Y
Sbjct: 385 CLGPEEEASNYVVKHHSEYASDFVRVTFVDEDWSKLSVNAISARIEQGFFSQPFKTGLYY 444
Query: 338 RVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVT 397
R+LS L+ G +IG KKFE LAFS SQ RE ++WMFAS L A IR MG F EI++V+
Sbjct: 445 RILSILKEGFIIGPKKFEFLAFSASQLREGSVWMFASNDSLNAESIRRWMGHFEEIRSVS 504
Query: 398 KYAARLGQSFASSREALHV----------------------DSNIGKISAELAETVAKKC 435
K AAR+GQ F+SSR+ + V IGK+S A +A +
Sbjct: 505 KCAARMGQLFSSSRQTVEVRPWDVEEIPDIEVTTNNTKYIFSDGIGKMSVRFAREIAYRI 564
Query: 436 GY-AIYTPSAFQIRYGGYK------------VTLRNNMFKYKSESTSLDILANSKYQ--- 479
G PSAFQIR+GGYK ++LR +M K++S+ L+I + SK Q
Sbjct: 565 GLDHTNPPSAFQIRFGGYKGVIAVDPSSFRNLSLRPSMRKFESDCRMLNITSWSKSQPCY 624
Query: 480 --REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELL 533
RE ++ L D VFE Q++ + LD +LT+ L + SAE T ++L
Sbjct: 625 VNREIISLLSTLGIRDEVFELMQQDDMRELDEMLTNKEVALSVLGKIGSAE-TKTAADML 683
Query: 534 NCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ----- 588
GY+P +EP+L M+ + + L ++R++ +I + G+ ++GCLDE G L+YGQ
Sbjct: 684 LQGYEPISEPYLLMILKAHQDNRLTDIRSKFKIHVPKGRVLLGCLDETGKLKYGQVYIRI 743
Query: 589 --------------------------GLMVVAKKPCLHPGDMRVLRAVDVPALH--HMVD 620
G + V+K PCLHPGD+RVL AV P LH +VD
Sbjct: 744 TKNNKEQKENEQPYFSEDDGKTVTLVGKVAVSKNPCLHPGDVRVLEAVYDPGLHAKKLVD 803
Query: 621 CVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIE 680
CV+FP +GERPH NECSG D DG++YFV WD IP P YT A +I+ VT+E
Sbjct: 804 CVVFPQRGERPHPNECSGGDLDGDLYFVTWDDKLIPEKADAPMDYTGARPRIMDHVVTLE 863
Query: 681 DVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATI 740
+++++ +Y+++DSLG I NAH+++A +P KA S C L L S+ DF+KTG A +
Sbjct: 864 EIQQHVVNYMLSDSLGAISNAHLIHADRDPMKARSPECLQLAALHSMAVDFAKTGAPAEL 923
Query: 741 PSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDM 800
P LR + +PDFME+ DK Y S ++G LYR S+ + S + YD ++
Sbjct: 924 PRSLRPREFPDFMERWDKPMYISNGVLGKLYRAAVSRMESSHALASQVQSSPT--YDREL 981
Query: 801 EVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCI----MEMAKSFDKKR 856
V GF+E D K+ Y KL LM+YYG + E E+L+ I + + K +
Sbjct: 982 AVPGFEEFLE--DAEKHYDLYVEKLTTLMNYYGAEHEDEILTGNIRNRLLYLRKDRKRYS 1039
Query: 857 DLEAISF-SVRSLRKEARAWF 876
D++ F SV +L +E R WF
Sbjct: 1040 DMKDRIFDSVNALHEEVRGWF 1060
>gi|125548642|gb|EAY94464.1| hypothetical protein OsI_16234 [Oryza sativa Indica Group]
Length = 1136
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 270/753 (35%), Positives = 390/753 (51%), Gaps = 89/753 (11%)
Query: 220 KHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDG--GLIYVNKILVTPSK 277
+ E + L CY+P+ +++++ S S +G L+ ++ +TPSK
Sbjct: 326 RRIFEKMHKLESTCYEPLQFIQQEAYSMKRSHNVLLSNEGEGEGERKLMKCYRVNITPSK 385
Query: 278 VYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGER--RTRI 335
++ GPE ++N VV+ + +F+R++FVDED KL S +S +I + +T +
Sbjct: 386 IFCLGPEEEVTNYVVKHHSAYASDFVRVTFVDEDWSKLSSNAISARIEQGFFSKPFKTGL 445
Query: 336 YERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKN 395
Y R+LS L+ G IG K FE LAFS SQ R N++WMFAS L A IR MG F I++
Sbjct: 446 YYRILSILKKGFSIGPKNFEFLAFSASQLRGNSVWMFASNASLNAGGIRRWMGHFENIRS 505
Query: 396 VTKYAARLGQSFASSREALHV----------------------DSNIGKISAELAETVAK 433
V+K AAR+GQ F+SSR+ V IGKIS A+ VA
Sbjct: 506 VSKCAARMGQLFSSSRQTFEVLRWDVEVIPDIEITTDGSKYIFSDGIGKISLRFAKRVAH 565
Query: 434 KCGY-AIYTPSAFQIRYGGYK------------VTLRNNMFKYKSESTSLDILANSKYQ- 479
G PSAFQIRYGGYK ++LR +M K++SES L+I + SK Q
Sbjct: 566 HVGLDPTNLPSAFQIRYGGYKGVIAIDPMSSIDLSLRPSMKKFESESRMLNITSWSKSQP 625
Query: 480 ----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKE 531
RE ++ L D +F Q++ + + +LT+ L + +E +K
Sbjct: 626 CYVNREIISLLSTLGIRDEIFVAMQQDEMRETEEMLTNKEVALSVLGKLGGSETKTAVKM 685
Query: 532 LLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ--- 588
LL GY+P +EP+LSM+ + + L ++RTR +I + G+ ++GCLDE G LEYGQ
Sbjct: 686 LLQ-GYEPSSEPYLSMILKAHQENRLTDIRTRCKIHVPKGRVLIGCLDETGVLEYGQVYI 744
Query: 589 ----------------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVD 620
G + + K PCLHPGD+RVL A+ P L MVD
Sbjct: 745 RITKNSKEQKDSNQSYFYNDDGKTATVVGKVAITKNPCLHPGDIRVLEAIYDPDLVGMVD 804
Query: 621 CVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIE 680
C++FP +GERPH NECSG D DG++YF+ WD IP P YT +I+ VT+E
Sbjct: 805 CLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIPEKVDTPMDYTATRPRIMDHVVTLE 864
Query: 681 DVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATI 740
+++++F DY++NDSLG I AH+++A P KA S C L L S+ DF+KTG A +
Sbjct: 865 EIQKHFVDYMINDSLGAISTAHLIHADRSPLKARSPECLQLATLHSMAVDFAKTGAPAEM 924
Query: 741 PSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAM--QFYDT 798
P LR + YPDFME+ +K Y S ++G LYR G + + + A YD
Sbjct: 925 PRTLRPREYPDFMERWEKPMYISNGVLGKLYRSAMGHMEKSGDSGALSSSSAQPSPTYDP 984
Query: 799 DMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIME--MAKSFDKKR 856
D+EV G E +Y Y+ KL LM+YY + E E+L+ I + D KR
Sbjct: 985 DLEVPGSDEFLQA--AEEYYELYEEKLTTLMNYYRAEHEDEILTGNIRNKMLYLKRDNKR 1042
Query: 857 DLEA---ISFSVRSLRKEARAWFNKKKNDSDSS 886
E I +V +L +EAR W + + D+S
Sbjct: 1043 YFEMKDRIVAAVDALHREARGWLLSSRKEEDAS 1075
>gi|75327281|sp|Q7XM31.1|RDR2_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 2; Short=OsRDR2
gi|32492169|emb|CAE04828.1| OSJNBb0048E02.13 [Oryza sativa Japonica Group]
Length = 1136
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 270/753 (35%), Positives = 389/753 (51%), Gaps = 89/753 (11%)
Query: 220 KHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDG--GLIYVNKILVTPSK 277
+ E + L CY P+ +++++ S S +G L+ ++ +TPSK
Sbjct: 326 RRIFEKMHKLESTCYGPLQFIQQEAYSMKRSHNVLLSNEGEGEGERKLMKCYRVNITPSK 385
Query: 278 VYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGER--RTRI 335
++ GPE ++N VV+ + +F+R++FVDED KL S +S +I + +T +
Sbjct: 386 IFCFGPEEEVTNYVVKHHSAYASDFVRVTFVDEDWSKLSSNAISARIEQGFFSKPFKTGL 445
Query: 336 YERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKN 395
Y R+LS L+ G IG K FE LAFS SQ R N++WMFAS L A IR MG F I++
Sbjct: 446 YYRILSILKKGFSIGPKNFEFLAFSASQLRGNSVWMFASNASLNAGGIRRWMGHFENIRS 505
Query: 396 VTKYAARLGQSFASSREALHV----------------------DSNIGKISAELAETVAK 433
V+K AAR+GQ F+SSR+ V IGKIS A+ VA
Sbjct: 506 VSKCAARMGQLFSSSRQTFEVLRWDVEVIPDIEITTDGSKYIFSDGIGKISLRFAKRVAH 565
Query: 434 KCGY-AIYTPSAFQIRYGGYK------------VTLRNNMFKYKSESTSLDILANSKYQ- 479
G PSAFQIRYGGYK ++LR +M K++SES L+I + SK Q
Sbjct: 566 HVGLDPTNLPSAFQIRYGGYKGVIAIDPMSSIDLSLRPSMKKFESESRMLNITSWSKSQP 625
Query: 480 ----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKE 531
RE ++ L D +F Q++ + + +LT+ L + +E +K
Sbjct: 626 CYVNREIISLLSTLGIRDEIFVAMQQDEMRETEEMLTNKEVALSVLGKLGGSETKTAVKM 685
Query: 532 LLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ--- 588
LL GY+P +EP+LSM+ + + L ++RTR +I + G+ ++GCLDE G LEYGQ
Sbjct: 686 LLQ-GYEPSSEPYLSMILKAHQENRLTDIRTRCKIHVPKGRVLIGCLDETGVLEYGQVYI 744
Query: 589 ----------------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVD 620
G + + K PCLHPGD+RVL A+ P L MVD
Sbjct: 745 RITKNSKEQKDSNQSYFYNDDGKTATVVGKVAITKNPCLHPGDIRVLEAIYDPDLVGMVD 804
Query: 621 CVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIE 680
C++FP +GERPH NECSG D DG++YF+ WD IP P YT +I+ VT+E
Sbjct: 805 CLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIPEKVDTPMDYTATRPRIMDHVVTLE 864
Query: 681 DVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATI 740
+++++F DY++NDSLG I AH+++A P KA S C L L S+ DF+KTG A +
Sbjct: 865 EIQKHFVDYMINDSLGAISTAHLIHADRSPLKARSPECLQLATLHSMAVDFAKTGAPAEM 924
Query: 741 PSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAM--QFYDT 798
P LR + YPDFME+ +K Y S ++G LYR G + + + A YD
Sbjct: 925 PRTLRPREYPDFMERWEKPMYISNGVLGKLYRSAMGHMEKSGDSGALSSSSAQPSPTYDP 984
Query: 799 DMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIME--MAKSFDKKR 856
D+EV G E +Y Y+ KL LM+YY + E E+L+ I + D KR
Sbjct: 985 DLEVPGSDEFLQA--AEEYYELYEEKLTTLMNYYRAELEDEILTGNIRNKMLYLKRDNKR 1042
Query: 857 DLEA---ISFSVRSLRKEARAWFNKKKNDSDSS 886
E I +V +L +EAR W + + D+S
Sbjct: 1043 YFEMKDRIVAAVDALHREARGWLLSSRKEEDAS 1075
>gi|224141893|ref|XP_002324295.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222865729|gb|EEF02860.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1200
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 254/703 (36%), Positives = 379/703 (53%), Gaps = 92/703 (13%)
Query: 263 GGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLS- 321
G ++ + ++++TP+K Y PE+ LSNRV+R Y D D FLR++F+DE L ++ S VL+
Sbjct: 411 GDVVEIRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNY 470
Query: 322 ------PQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASR 375
I+S + ++TRI++RV S L G + +++ LAFS +Q R+ + W F+
Sbjct: 471 YVAPIVRDITSNSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFSEE 530
Query: 376 PELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHV------------------- 416
++ D++ MG F +N+ K AAR+GQ F+S+ + V
Sbjct: 531 RNISVLDVKSWMGKFTN-RNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIERNGYVF 589
Query: 417 DSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK--------------VTLRNNMFK 462
IG I+ +LA VA+K I P A+QIRY G K ++LR +M K
Sbjct: 590 SDGIGIITPDLAREVAEKLKLDIDPPCAYQIRYAGCKGVVACWPGKGDGVRLSLRPSMNK 649
Query: 463 YKSESTSLDILANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKV 513
++S T+L+I + +++Q R+ + L D VF + Q +V++L+ + +S
Sbjct: 650 FQSNHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVA 709
Query: 514 QEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQA 573
+ L S A+ NV +L+ G+KPD EP L M A+ L +LR + RIF+ +G+
Sbjct: 710 FDVLT-ASCADQGNVAAIMLSAGFKPDREPHLRGMLTCVRAAQLWDLREKTRIFVPSGRW 768
Query: 574 MMGCLDEKGTLEYGQ--------------------------------GLMVVAKKPCLHP 601
+MGCLDE G LE GQ G +V+AK PCLHP
Sbjct: 769 LMGCLDELGMLEQGQCFIQVSNSSLEKCFMKHGAKFSEAEKNLQVIKGTVVIAKNPCLHP 828
Query: 602 GDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ-- 659
GD+RVL AVDVP LHH+ DC++FP KGERPHTNE SGSD DG++YFV WD + IPP +
Sbjct: 829 GDVRVLEAVDVPGLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKRS 888
Query: 660 FQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCP 719
+ P Y A K+LAR V +D+ E+FA +VND+LG ICNAHVV+A A C
Sbjct: 889 WIPMQYDAAEAKLLARPVNHQDIIEFFAKNMVNDNLGAICNAHVVHADLSEYGATDKNCL 948
Query: 720 DLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAP 779
L +L++ DF KTG ++P L+ K+YPDFM K++ Y+S+ I+G LYR++
Sbjct: 949 TLAELAATAVDFPKTGKVVSMPPYLKPKMYPDFMGKEEYQSYKSEKILGRLYRQIKDAYD 1008
Query: 780 STTTIKSFAK--EGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTE 837
S G + YD+D+EV G + D + + YD +L L+ Y +K E
Sbjct: 1009 EDVAASSELNLVPGDIP-YDSDLEVVGASDYIS--DAWDQKCSYDGQLNGLLSQYKVKRE 1065
Query: 838 AEMLSRCIMEMAKSFDKKRD--LEAISFSVRSLRKEARAWFNK 878
E+++ I M K +K+ + + S SL+KE R F K
Sbjct: 1066 EEVVTGHIWSMPKYSSRKQGELKDRLKHSYNSLKKEFRQIFEK 1108
>gi|357117510|ref|XP_003560510.1| PREDICTED: probable RNA-dependent RNA polymerase 2-like [Brachypodium
distachyon]
Length = 1138
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 268/739 (36%), Positives = 397/739 (53%), Gaps = 92/739 (12%)
Query: 223 LEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCG 282
E + L CY+P+ ++ + + ++ +S +G L+ +I +TPSK+Y G
Sbjct: 328 FEKMSKLESTCYEPLQFIESELK--LTQNALLSSKREG-EGKLMRCYRIHITPSKIYCLG 384
Query: 283 PEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST--NGERRTRIYERVL 340
P+ SN VV+ + + +F+R++FVDED KL +S +I + +T +Y R+L
Sbjct: 385 PQEEASNYVVKHHSEYASDFVRVTFVDEDWSKLSVNAISARIEQGFFSQPFKTGLYYRIL 444
Query: 341 STLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYA 400
S L+ G +IG KKF+ LAFS SQ RE ++WMFAS L A IR MG F EI +V+K A
Sbjct: 445 SILKEGFIIGPKKFKFLAFSASQLREGSVWMFASNDSLNAEGIRRWMGHFEEICSVSKCA 504
Query: 401 ARLGQSFASSREALHV----------------------DSNIGKISAELAETVAKKCGYA 438
AR+GQ F+SSR+ + V IGK+S A+ +A + G
Sbjct: 505 ARMGQLFSSSRQTVEVRPKDVEEIPDIEVITNNMKYIFSDGIGKMSVRFAKEIAYRIGLD 564
Query: 439 IYT-PSAFQIRYGGYK------------VTLRNNMFKYKSESTSLDILANSKYQ-----R 480
PSAF+IR+GGYK ++LR +M K++S+ L+I + SK Q R
Sbjct: 565 HKNPPSAFEIRFGGYKGVIAVDPSSYRNLSLRPSMRKFESDCRMLNITSWSKSQPCHVNR 624
Query: 481 EGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNCG 536
E ++ L D VFE Q++ + LD +LT+ L + SAE T ++L G
Sbjct: 625 EIISLLSTLGIRDEVFELMQQDDMCELDEMLTNKEIALSVLGKIGSAE-TKTAADMLLQG 683
Query: 537 YKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ-------- 588
YKP +EP+L M+ + + L ++R++ +I + G+ ++GCLDE G L+YGQ
Sbjct: 684 YKPISEPYLLMILKAHQDNRLTDIRSKFKIHVPKGRVLLGCLDETGILKYGQVYIRITKN 743
Query: 589 -----------------------GLMVVAKKPCLHPGDMRVLRAVDVPALH--HMVDCVL 623
G + V+K PCLHPGD+RVL AV LH +VDCV+
Sbjct: 744 NKEQKENEQPYFCKDDGKTVTLVGKVAVSKNPCLHPGDVRVLEAVCDLELHATKLVDCVV 803
Query: 624 FPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVE 683
FP +GERPH NECSG D DG++YFV WD IP P YT A +I+ VT+E+++
Sbjct: 804 FPQRGERPHPNECSGGDLDGDLYFVTWDDRLIPEKADTPMDYTAARPRIMDHVVTLEEIQ 863
Query: 684 EYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSR 743
++ +Y+++DSLG I NAH+++A +P KA S C L L S+ DF+KTG A +P
Sbjct: 864 QHVVNYMLSDSLGAISNAHLIHADRDPMKARSPECLRLAALHSMAVDFAKTGAPAELPRS 923
Query: 744 LRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVN 803
LR + +PDFME+ DK Y S ++G LYR S+ + S + YD ++EV
Sbjct: 924 LRPREFPDFMERWDKPMYISTGVLGKLYRAAVSRMESSHALASQVQSSPT--YDRELEVP 981
Query: 804 GFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCI----MEMAKSFDKKRDL- 858
GF+E D K+ Y KL LM+Y G + E EML+ I + + K + D+
Sbjct: 982 GFEEFLEDAD--KHYDLYVEKLTTLMNYDGAEHEDEMLTGNIRNRLLYLRKDRKRYSDMK 1039
Query: 859 EAISFSVRSLRKEARAWFN 877
+ I SV +L +E R WF+
Sbjct: 1040 DRIVDSVNALHEEVRGWFH 1058
>gi|297737619|emb|CBI26820.3| unnamed protein product [Vitis vinifera]
Length = 919
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/335 (62%), Positives = 245/335 (73%), Gaps = 8/335 (2%)
Query: 556 NLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQGLMVVAKKPCLHPGDMRVLRAVDVPAL 615
+LLELRT+ RIF+ NG G + LE G +VVAK PCLHPGD+RVL AV+VP L
Sbjct: 524 DLLELRTKTRIFVPNGS---GSHHDNFILE---GKIVVAKNPCLHPGDVRVLWAVNVPTL 577
Query: 616 HHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILAR 675
HHMVDCV+FP KG+RPH NECSGSD DG+IYFVCWD D IPP Q P YTPAP K+L
Sbjct: 578 HHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQINPMDYTPAPTKVLDH 637
Query: 676 DVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTG 735
DV IE+VEEYF +YIVNDSLGII NAH V+A E DKA + C +L KL SI DF KTG
Sbjct: 638 DVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPKTG 697
Query: 736 VAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQF 795
V A IP LRVK YPDFMEK DK YESQ ++G L+REV IAP I+SF ++ A Q
Sbjct: 698 VPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDVARQS 757
Query: 796 YDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKK 855
YD DMEV GF++ D F Y++EYD KLGNLMDYYGIKTE+E+LS IM M+KSFD++
Sbjct: 758 YDPDMEVVGFEDYVS--DAFYYKSEYDYKLGNLMDYYGIKTESEILSGSIMRMSKSFDRR 815
Query: 856 RDLEAISFSVRSLRKEARAWFNKKKNDSDSSHKDV 890
+D EAI +V+SLRKEAR WFNK +++DS DV
Sbjct: 816 KDAEAIGLAVKSLRKEARTWFNKMGSETDSEADDV 850
Score = 331 bits (848), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 216/566 (38%), Positives = 298/566 (52%), Gaps = 133/566 (23%)
Query: 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAAD 58
M+K I +YGF S+ S +KEFLE++TGEGT+ +E+ Q + S HA V+FT+ E A+
Sbjct: 1 MSKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIKQPRSGASMTHAKVQFTSFELAE 60
Query: 59 FIKCLARERLSYGNSFLKASSAKRRTPHFAKRTPHYKLGGDLKLNFGCQISKDKFSVFWS 118
FI L ++++ YG ++LKA K + L+FGCQ+S ++F V W
Sbjct: 61 FIITLCKKKVWYGRNYLKAREMDLDI--IPKPRAFLHSMDRITLHFGCQMSDERFCVLWK 118
Query: 119 QENVS-----VKLCSDLRKFGFFLSYES----VDYKLELSNESIWQIELHRPSGHSVSIG 169
NVS + ++ G YE + Y + + + W E+ S IG
Sbjct: 119 AINVSHPRGQITKFLLIQLLGAPQIYEKDVPVLSYYFKEAPDDQWVREIDFTP--SCFIG 176
Query: 170 QSSAICLELPSRALIPKALKDFFHYKESLVQFTLLPGFVFSCN----------------- 212
QS A+CLELP + +P ++F +YKE+ +F L G +S N
Sbjct: 177 QSFALCLELPYGSQLPNFRENFAYYKENDGKFILESGSSYSHNLHLVPILGPPQGSSLPF 236
Query: 213 ------SDLNQDG-------------------------KHALEMLFHLRECCYDPVSWLR 241
+ L Q+G +HALE L+HL+ECCY+PV WL
Sbjct: 237 QILFKINTLVQNGCLSGPTLDTSFFRLVDPERFPISFIEHALEKLYHLKECCYEPVRWLS 296
Query: 242 EQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDN 301
EQYR +V SPA++LD GL+YV ++ +TP
Sbjct: 297 EQYRTYVKK-PVAGSPAISLDTGLVYVRRVQITPY------------------------- 330
Query: 302 FLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSN 361
E+L K++STV+SP++S RRT +Y R+LS L+NGIVIGDKKF+ LAFS+
Sbjct: 331 --------ENLEKIHSTVISPRMSKEG--RRTGVYRRILSILQNGIVIGDKKFDFLAFSS 380
Query: 362 SQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN-- 419
SQ R+N+ WMFASRP LTAA+IR MGDF +I+NV KYAARLGQSF+SS+E L V +
Sbjct: 381 SQLRDNSAWMFASRPGLTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEI 440
Query: 420 --------------------IGKISAELAETVAKKCGYAIYTPSAFQIRYGGY------- 452
IGKIS +LA VA KCG TPSAFQIRYGGY
Sbjct: 441 ENIPDIEIHKGRTTYVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVD 500
Query: 453 -----KVTLRNNMFKYKSESTSLDIL 473
K++LR +MFKY+S++T+LD+L
Sbjct: 501 PTSSRKLSLRKSMFKYESDNTNLDLL 526
>gi|295885030|gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
gi|295885034|gb|ADG57592.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
Length = 1196
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 261/754 (34%), Positives = 396/754 (52%), Gaps = 92/754 (12%)
Query: 222 ALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFC 281
AL+ ++ R YD L++ + + + + SP D ++ + ++++TP+K Y
Sbjct: 368 ALKHIYSYRHPVYDAYERLKDVHDWLLKNPKLFKSPPQLDD--IVEIRRLVITPTKAYCL 425
Query: 282 GPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLS-------PQISSTNGERRTR 334
PE+ LSNRV+R Y D D FLR++F+DE + + + VL+ ++ST+ ++T
Sbjct: 426 LPEVELSNRVLRKYKDVADRFLRVTFMDEGMQIMNANVLTYYNAAIVRDVTSTSFSQKTG 485
Query: 335 IYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIK 394
+++RV S L +G + +K+ LAFS +Q R+ W FA ++ I MG F +
Sbjct: 486 VFKRVKSILTDGFYLCGRKYSFLAFSANQLRDRAAWFFAEDGKINVLQIIGWMGKFTN-R 544
Query: 395 NVTKYAARLGQSFASSREALHVDSN-------------------IGKISAELAETVAKKC 435
N+ K AAR+GQ F+S+ + V S IGKI+ +LA VA+K
Sbjct: 545 NIAKCAARMGQCFSSTYATVEVPSGQVNMHLPDIKRNGYDFSDGIGKITPDLAMEVAQKL 604
Query: 436 GYAIYTPSAFQIRYGGYK--------------VTLRNNMFKYKSESTSLDILANSKYQ-- 479
+ P A+QIRY G K ++LR++M K+ S T+L+I + +++Q
Sbjct: 605 KLDLNPPCAYQIRYAGCKGVVACWPEEGDRIRLSLRSSMIKFFSHHTTLEICSWTRFQPG 664
Query: 480 ---REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKEL 532
R+ + L D VF Q +V++LD +L D+ E + + S E + +
Sbjct: 665 FLNRQIITLLSTLGVPDEVFWGMQNSMVSKLDKVLVDTDAAFEVV-ISSCGEQGHTPAIM 723
Query: 533 LNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ---- 588
L+ G+KP EP L M AS L LR ++RIFI +G+ +MG LDE G LE GQ
Sbjct: 724 LSAGFKPQTEPHLRGMLTCVRASQLWGLREKSRIFIHSGRWLMGVLDELGVLEQGQCFIQ 783
Query: 589 ----------------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVD 620
GL+V+AK PCLHPGD+R+L AVD P LHH+ D
Sbjct: 784 VSNPSLQNCFLKHGSRFAETKKNFEVIKGLVVIAKNPCLHPGDIRILEAVDAPGLHHLYD 843
Query: 621 CVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ--FQPTAYTPAPEKILARDVT 678
C++FP KGERPHTNE SGSD DG++YFV W+ IPP + QP Y + L R VT
Sbjct: 844 CLVFPQKGERPHTNEASGSDLDGDLYFVTWEEALIPPSKKSSQPMQYDLDAPRELNRSVT 903
Query: 679 IEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAA 738
+D+ E+F+ +VN+ LG ICNAHVV++ A +C L +L++I DF KTG
Sbjct: 904 HKDIIEFFSKNMVNEHLGSICNAHVVHSDLSEHGASDEKCIHLAELAAIAVDFPKTGKIV 963
Query: 739 TIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQF-YD 797
++P++L+ K+YPDFM K++ Y+S I+G LYR + + S GA YD
Sbjct: 964 SMPAQLKPKLYPDFMGKEEFQSYKSNKILGRLYRYIKDAYDKDVSESSELNFGASDINYD 1023
Query: 798 TDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKR- 856
D+E+ G + D + + YD +L L+ Y +K E E+++ I M K KK
Sbjct: 1024 ADLEITGSADYIT--DAWAKKCSYDGQLIGLLKQYKVKREEEVVTGQIWSMPKYASKKLG 1081
Query: 857 DL-EAISFSVRSLRKEARAWFNKKKNDSDSSHKD 889
DL E + S SLRKE R F ++ + ++D
Sbjct: 1082 DLKEKLGHSYGSLRKEFRQLFENMDSEFEQLNED 1115
>gi|167995454|gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
Length = 1197
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 254/706 (35%), Positives = 383/706 (54%), Gaps = 90/706 (12%)
Query: 265 LIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKL-------YS 317
++ V ++++TP+K Y P + LSNRV+R+Y D FLR++F+DE + L Y+
Sbjct: 410 IVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYA 469
Query: 318 TVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE 377
+ +I+S + +RT I++RV S L G + +K+ LAFS +Q R+ + W FA P+
Sbjct: 470 ATIVREITSNSNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPK 529
Query: 378 LTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN------------------ 419
+ I MG F +NV K AAR+GQ F+S+ + V S+
Sbjct: 530 IRVPGIISWMGRFSN-RNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSD 588
Query: 420 -IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK--------------VTLRNNMFKYK 464
IG ISA+LA VA+K ++ PSA+QIRY G K ++LR +M K+
Sbjct: 589 GIGMISADLAVEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFD 648
Query: 465 SESTSLDILANSKYQ-----REGVARLR----LDNVFERKQREVVARLDAILTDSSKVQE 515
S T L+I + +++Q R+ V L D +F Q+E+++ LD +L DS +
Sbjct: 649 SNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFD 708
Query: 516 ALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMM 575
+ S AE N +L+ G+KP +EP L M + AS L +LR +ARIF+ +G+ +M
Sbjct: 709 VIT-ASCAEAGNTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLM 767
Query: 576 GCLDEKGTLEYGQ--------------------------------GLMVVAKKPCLHPGD 603
GCLDE G LE GQ GL+V+AK PCLHPGD
Sbjct: 768 GCLDELGELEQGQCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGD 827
Query: 604 MRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ--FQ 661
+R+L AVDVP LHH+ DC++FP KG+RPH+NE SGSD DG++YFV WD + IPP + +
Sbjct: 828 VRILEAVDVPGLHHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWI 887
Query: 662 PTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDL 721
P Y PA K + R V D+ ++F+ +V +SLG ICNAHVV+A A+ +C L
Sbjct: 888 PMNYEPAEVKQMGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKL 947
Query: 722 VKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPST 781
+L+++ DF KTG T+P L+ K+YPDFM K++ Y+S+ I+G LYR+V + +
Sbjct: 948 AELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTE 1007
Query: 782 TTIKSFAKEGAMQF-YDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEM 840
+ + + YD+ +E+ G A D + + YD +L L+ Y + E E+
Sbjct: 1008 GEVSAGLELVPNDIPYDSSLEIPG--STAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEV 1065
Query: 841 LSRCIMEMAKSFDKKRD--LEAISFSVRSLRKEARAWFNKKKNDSD 884
++ I M K KK+ E + + +LRKE R F + + D D
Sbjct: 1066 VTGHIWSMPKYSAKKQGELKERLKHAYNTLRKEFRNVFERMEPDFD 1111
>gi|224089239|ref|XP_002308662.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222854638|gb|EEE92185.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1198
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 253/706 (35%), Positives = 371/706 (52%), Gaps = 99/706 (14%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLS------ 321
+ ++++TP+K Y PE+ LSNRV+R Y D D FLR++F+DE L + S L+
Sbjct: 413 IRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNYFAAPI 472
Query: 322 -PQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTA 380
I+S + ++TRI++RV S L G + +++ LAFS++Q R+ + W FA +
Sbjct: 473 VRAITSYSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINV 532
Query: 381 ADIRERMGDFREIKNVTKYAARLGQSFASSREALHV-------------------DSNIG 421
I+ MG F KN+ K AAR+GQ F+S+ + V IG
Sbjct: 533 MAIKSWMGKFTN-KNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIG 591
Query: 422 KISAELAETVAKKCGYAIYTPSAFQIRYGGYK--------------VTLRNNMFKYKSES 467
I+ +LA VA+K + P A+QIRY G K ++LR++M K++S
Sbjct: 592 MITPDLAREVAEKLKFDFDPPCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNH 651
Query: 468 TSLDILANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEALE 518
T L+I + +++Q R+ + L D VF + Q +V++L+ +L DS + L
Sbjct: 652 TILEICSWTRFQPGFLNRQIITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDVAFDVLT 711
Query: 519 LMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCL 578
S AE NV +L+ G+KP EP L M A+ L LR +ARIF+ +G+ +MGCL
Sbjct: 712 -ASCAEQGNVAAIMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCL 770
Query: 579 DEKGTLEYGQ--------------------------------GLMVVAKKPCLHPGDMRV 606
DE G LE GQ G +V+AK PCLHPGD+R+
Sbjct: 771 DELGVLEQGQCFIQVSNSYLENCFVKHGSKFSETKKNLQVVKGTVVIAKNPCLHPGDIRI 830
Query: 607 LRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ--FQPTA 664
L AVD P LHH+ DC++FP KGERPH NE SGSD DG++YFV WD + IPP + + P
Sbjct: 831 LEAVDAPGLHHLYDCLVFPQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQ 890
Query: 665 YTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKL 724
Y A K L R V +D+ E+FA + N++LG ICNAHVV A A+ +C L +L
Sbjct: 891 YDAAEAKQLTRPVNHQDIVEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAEL 950
Query: 725 SSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTI 784
++ DF KTG ++PS L+ KIYPDFM K++ Y+S+ I+G LYR++
Sbjct: 951 AATAVDFPKTGKIVSMPSDLKPKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAYDDDDVA 1010
Query: 785 KSFAKEGAMQF------YDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEA 838
S + F YD D+EV G + D + + YD +L L+ Y +K E
Sbjct: 1011 AS----SELNFVRGDIPYDLDLEVLGATDFIS--DAWDRKCSYDGQLNGLLAQYKVKREE 1064
Query: 839 EMLSRCIMEMAKSFDKKR-DL-EAISFSVRSLRKEARAWFNKKKND 882
E+++ + M K +K+ DL E + S L++E R F K D
Sbjct: 1065 EVVTGHVWSMPKGSSRKQGDLKERLKHSYNCLKREFRQVFEKMDLD 1110
>gi|226596555|gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
Length = 1197
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 254/706 (35%), Positives = 382/706 (54%), Gaps = 90/706 (12%)
Query: 265 LIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKL-------YS 317
++ V ++++TP+K Y P + LSNRV+R+Y D FLR++F+DE + L Y+
Sbjct: 410 IVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYA 469
Query: 318 TVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE 377
+ +I+S + +RT I++RV S L G + +K+ LAFS +Q R+ + W FA P+
Sbjct: 470 ATIVREITSNSNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPK 529
Query: 378 LTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN------------------ 419
+ I MG F +NV K AAR+GQ F+S+ + V S+
Sbjct: 530 IRVPGIISWMGRFSN-RNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSD 588
Query: 420 -IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK--------------VTLRNNMFKYK 464
IG ISA+LA VA+K ++ P+A+QIRY G K ++LR +M K+
Sbjct: 589 GIGMISADLAIEVAEKLHLSVNPPAAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFD 648
Query: 465 SESTSLDILANSKYQ-----REGVARLR----LDNVFERKQREVVARLDAILTDSSKVQE 515
S T L+I + +++Q R+ V L D +F Q+E++A LD +L DS +
Sbjct: 649 SNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMIAGLDKMLVDSDVAFD 708
Query: 516 ALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMM 575
+ S AE N +L+ G+KP +EP L M + AS L +LR +ARIF+ +G+ +M
Sbjct: 709 VIT-ASCAEAGNTAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLM 767
Query: 576 GCLDEKGTLEYGQ--------------------------------GLMVVAKKPCLHPGD 603
GCLDE G LE GQ GL+V+AK PCLHPGD
Sbjct: 768 GCLDELGELEQGQCFIQVSSPSLENCFVKHGSKFSDIKKNLQVVKGLVVIAKNPCLHPGD 827
Query: 604 MRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ--FQ 661
+R+L AVDVP+L H+ DC++FP KG+RPH+NE SGSD DG++YFV WD + IPP + +
Sbjct: 828 VRILEAVDVPSLSHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENIIPPSKKSWI 887
Query: 662 PTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDL 721
P Y PA K L R V D+ ++F+ +V +SLG ICNAHVV+A A+ +C L
Sbjct: 888 PMNYEPAEVKQLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKL 947
Query: 722 VKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPST 781
+L+++ DF KTG T+P L+ K+YPDFM K++ Y+S+ I+G LYR+V + +
Sbjct: 948 AELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAE 1007
Query: 782 TTIKSFAKEGAMQF-YDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEM 840
+ + + YDT +E+ G D + + YD +L L+ Y + E E+
Sbjct: 1008 GEVSAGLEVVPKDIPYDTTLEILG--STTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEV 1065
Query: 841 LSRCIMEMAKSFDKKRD--LEAISFSVRSLRKEARAWFNKKKNDSD 884
++ I M K KK+ E + + +LRKE R F + + D D
Sbjct: 1066 VTGHIWSMPKYSAKKQGELKERLKHAYNTLRKEFRNVFERMEPDFD 1111
>gi|297748117|gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 254/706 (35%), Positives = 382/706 (54%), Gaps = 90/706 (12%)
Query: 265 LIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKL-------YS 317
++ V ++++TP+K Y P + LSNRV+R+Y D FLR++F+DE + L Y+
Sbjct: 410 IVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYA 469
Query: 318 TVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE 377
+ +I+S + +RT I++RV S L G + +K+ LAFS +Q R+ + W FA P+
Sbjct: 470 ATIVREITSNSNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPK 529
Query: 378 LTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN------------------ 419
+ I MG F +NV K AAR+GQ F+S+ + V S+
Sbjct: 530 IRVPGIISWMGRFSN-RNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSD 588
Query: 420 -IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK--------------VTLRNNMFKYK 464
IG ISA+LA VA+K ++ PSA+QIRY G K ++LR +M K+
Sbjct: 589 GIGMISADLAIEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFD 648
Query: 465 SESTSLDILANSKYQ-----REGVARLR----LDNVFERKQREVVARLDAILTDSSKVQE 515
S T L+I + +++Q R+ V L D +F Q+E+++ LD +L DS +
Sbjct: 649 SNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFD 708
Query: 516 ALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMM 575
+ S AE N +L+ G+KP +EP L M + AS L +LR +ARIF+ +G+ +M
Sbjct: 709 VIT-ASCAEAGNTAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLM 767
Query: 576 GCLDEKGTLEYGQ--------------------------------GLMVVAKKPCLHPGD 603
GCLDE G LE GQ GL+V+AK PCLHPGD
Sbjct: 768 GCLDELGELEQGQCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGD 827
Query: 604 MRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ--FQ 661
+R+L AVDVP+L H+ DC++FP KG+RPH+NE SGSD DG++YFV WD + IPP + +
Sbjct: 828 VRILEAVDVPSLSHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWI 887
Query: 662 PTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDL 721
P Y PA K L R V D+ ++F+ +V +SLG ICNAHVV+A A+ +C L
Sbjct: 888 PMNYEPAEVKQLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKL 947
Query: 722 VKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPST 781
+L+++ DF KTG T+P L+ K+YPDFM K++ Y+S+ I+G LYR+V + +
Sbjct: 948 AELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAE 1007
Query: 782 TTIKSFAKEGAMQF-YDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEM 840
+ + + YDT +E+ G D + + YD +L L+ Y + E E+
Sbjct: 1008 GEVSAGLEVVPKDIPYDTTLEILG--STTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEV 1065
Query: 841 LSRCIMEMAKSFDKKRD--LEAISFSVRSLRKEARAWFNKKKNDSD 884
++ I M K KK+ E + + +LRKE R F + + D D
Sbjct: 1066 VTGYIWSMPKYNAKKQGELKERLKHAYNTLRKEFRNVFERMEPDFD 1111
>gi|255548928|ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
Length = 1203
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 249/717 (34%), Positives = 376/717 (52%), Gaps = 96/717 (13%)
Query: 265 LIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLS--- 321
++ + ++ +TP++ Y PE+ LSNRV+R Y D D FLR++F+DE L + + L+
Sbjct: 410 IVEIRRLAITPTRAYCLPPEVELSNRVLRRYKDIADQFLRVTFMDEGLQTMNANTLTYYC 469
Query: 322 ----PQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE 377
I+S + ++TRI++RV S L +G + +K+ LAFS++Q R+ + W FA +
Sbjct: 470 APIVRDITSNSFSQKTRIFKRVKSILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDGK 529
Query: 378 LTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDS------------------- 418
+ + IR MG F +N+ K AAR+GQ F+S+ + V S
Sbjct: 530 TSVSKIRNWMGKFTN-RNIAKCAARMGQCFSSTYATVEVPSAEAILDLPDIERNNYIFSD 588
Query: 419 NIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK--------------VTLRNNMFKYK 464
IG I+ +LA+ VA+K + P A+QIRY G K ++LR +M K+
Sbjct: 589 GIGMITPDLAKEVAEKLKLEVNPPCAYQIRYAGCKGVVACWPAHIDGIRLSLRVSMNKFH 648
Query: 465 SESTSLDILANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQE 515
S T+L+I + +++Q R+ + L D +F + Q +V++L+ + D+ +
Sbjct: 649 SNHTTLEICSWTRFQPGFLNRQIITLLSTLDVPDEIFWKMQIVMVSKLNQMFMDADVAFD 708
Query: 516 ALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMM 575
+ S AE N +L+ G+ P EP L M A+ L LR + RIF+ +G+ +M
Sbjct: 709 VVT-ASCAEQGNTAAIMLSAGFNPKTEPHLCGMLTCIRAAQLWGLREKTRIFVPSGRWLM 767
Query: 576 GCLDEKGTLEYGQ--------------------------------GLMVVAKKPCLHPGD 603
GCLDE G LE+GQ G +VVAK PCLHPGD
Sbjct: 768 GCLDELGVLEHGQCFIQVSNPSLESCFWKHGSRFSESKKKLQVVKGTVVVAKNPCLHPGD 827
Query: 604 MRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ--FQ 661
+R+L AVD P LHH+ DC++FP KG+RPHTNE SGSD DG++YFV WD + IPP + +
Sbjct: 828 IRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWL 887
Query: 662 PTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDL 721
P Y A K L R V +D+ ++FA +VN++LG ICNAHVV+A A+ C L
Sbjct: 888 PMQYDAAEAKQLNRPVNHQDIIDFFAKNMVNENLGAICNAHVVHADLSEYGALDENCIKL 947
Query: 722 VKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPST 781
+L++ DF KTG T+P L+ K+YPDFM K+D Y S I+G LYR+V
Sbjct: 948 AELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKEDYQSYNSNKILGRLYRQVKDDYNDD 1007
Query: 782 TTIKSFAKEGAMQF-------YDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGI 834
A + YD D+EV+G + + D + + YD +L L+ Y +
Sbjct: 1008 DDDDDDAATSSELNLVRGDIPYDKDLEVSGSSDYIL--DAWDQKCSYDGQLKGLLAQYKV 1065
Query: 835 KTEAEMLSRCIMEMAKSFDKKRD--LEAISFSVRSLRKEARAWFNKKKNDSDSSHKD 889
K E E+++ I M K +K+ E + S SL+KE R F K +D + +D
Sbjct: 1066 KREEEVVTGHIWSMPKCNSRKQGELKERLKQSYHSLKKEFRQVFEKMDSDFEQLTED 1122
>gi|51989472|gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
Length = 1197
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 251/700 (35%), Positives = 378/700 (54%), Gaps = 90/700 (12%)
Query: 265 LIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKL-------YS 317
++ V ++++TP+K Y P + LSNRV+R+Y D FLR++F+DE + L Y+
Sbjct: 410 IVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYA 469
Query: 318 TVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE 377
+ +I+S + +RT I++RV S L G + +K+ LAFS +Q R+ + W FA P+
Sbjct: 470 ATIVREITSNSNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPK 529
Query: 378 LTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN------------------ 419
+ I MG F +NV K AAR+GQ F+S+ + V S+
Sbjct: 530 IRVPGIISWMGRFSN-RNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSD 588
Query: 420 -IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK--------------VTLRNNMFKYK 464
IG ISA+LA VA+K ++ PSA+QIRY G K ++LR +M K+
Sbjct: 589 GIGMISADLALEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGILLSLRPSMKKFD 648
Query: 465 SESTSLDILANSKYQ-----REGVARLR----LDNVFERKQREVVARLDAILTDSSKVQE 515
S T L+I + +++Q R+ V L D +F Q+E+++ L+ +L DS +
Sbjct: 649 SNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLNKMLVDSDVAFD 708
Query: 516 ALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMM 575
+ S AE N +L+ G+KP +EP L M + AS L +LR +ARIF+ +G+ +M
Sbjct: 709 VIT-ASCAEAGNTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLM 767
Query: 576 GCLDEKGTLEYGQ--------------------------------GLMVVAKKPCLHPGD 603
GCLDE G LE GQ GL+V+AK PCLHPGD
Sbjct: 768 GCLDELGELEQGQCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGD 827
Query: 604 MRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ--FQ 661
+R+L AVDVP LHH+ DC++FP KG+RPH+NE SGSD DG++YFV WD + IPP + +
Sbjct: 828 VRILEAVDVPGLHHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWI 887
Query: 662 PTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDL 721
P Y PA K L R V D+ ++F+ +V +SLG ICNAHVV+A A+ +C L
Sbjct: 888 PMNYEPAEVKQLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKL 947
Query: 722 VKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPST 781
+L+++ DF KTG T+P L+ K+YPDFM K++ Y+S+ I+G LYR+V + +
Sbjct: 948 AELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTE 1007
Query: 782 TTIKSFAKEGAMQF-YDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEM 840
+ + + YD+ +E+ G D + + YD +L L+ Y + E E+
Sbjct: 1008 GEVSAGLELVPNDIPYDSSLEIPG--STVFMGDAWNCKCSYDGQLHGLLGQYKVNREEEV 1065
Query: 841 LSRCIMEMAKSFDKKRD--LEAISFSVRSLRKEARAWFNK 878
++ I M K KK+ E + + LRKE R F +
Sbjct: 1066 VTGHIWSMPKYSAKKQGELKERLKHAYNMLRKEFRNVFER 1105
>gi|194719815|emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 252/700 (36%), Positives = 378/700 (54%), Gaps = 90/700 (12%)
Query: 265 LIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKL-------YS 317
++ V ++++TP+K Y P + LSNRV+R+Y D FLR++F+DE + L Y+
Sbjct: 410 IVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYA 469
Query: 318 TVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE 377
+ +I+S + +RT I++RV S L G + +K+ LAFS +Q R+ + W FA P+
Sbjct: 470 ATIVREITSNSNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPK 529
Query: 378 LTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN------------------ 419
+ I MG F +NV K AAR+GQ F+S+ + V S+
Sbjct: 530 IRVPGIISWMGRFSN-RNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSD 588
Query: 420 -IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK--------------VTLRNNMFKYK 464
IG ISA+LA VA+K + PSA+QIRY GYK ++LR +M K+
Sbjct: 589 GIGMISADLAIEVAEKLHLNVNPPSAYQIRYAGYKGVVACWPTKNDGILLSLRPSMKKFD 648
Query: 465 SESTSLDILANSKYQ-----REGVARLR----LDNVFERKQREVVARLDAILTDSSKVQE 515
S T L+I + +++Q R+ V L D +F Q+E+++ LD +L DS +
Sbjct: 649 SNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFD 708
Query: 516 ALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMM 575
+ S AE N +L+ G+KP +EP L M + AS L +LR +ARIF+ +G+ +M
Sbjct: 709 VIT-ASCAEAGNTAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLM 767
Query: 576 GCLDEKGTLEYGQ--------------------------------GLMVVAKKPCLHPGD 603
GCLDE G LE GQ GL+V+AK PCLHPGD
Sbjct: 768 GCLDELGELEQGQCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGD 827
Query: 604 MRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ--FQ 661
+R+L AVDVP+L H+ DC++FP KG+RPH+NE SGSD DG++YFV WD + IPP + +
Sbjct: 828 VRILEAVDVPSLSHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWI 887
Query: 662 PTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDL 721
P Y PA K L R V D+ ++F+ +V +SLG ICNAHVV+A A+ +C L
Sbjct: 888 PMNYEPAEVKQLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKL 947
Query: 722 VKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPST 781
+L+++ DF KTG T+P L+ K+YPDFM K++ Y+S+ I+G LYR+V + +
Sbjct: 948 AELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAE 1007
Query: 782 TTIKSFAKEGAMQF-YDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEM 840
+ + + YDT + + G D + + YD +L L+ Y + E E+
Sbjct: 1008 GEVSAGLEVVPKDIPYDTTLVIPG--STVFIDDAWNSKCSYDGQLHGLLGQYKVNREEEV 1065
Query: 841 LSRCIMEMAKSFDKKRD--LEAISFSVRSLRKEARAWFNK 878
++ I M K KK+ E + + +LRKE R F +
Sbjct: 1066 VTGHIWSMPKYSAKKQGELKERLKHAYNTLRKEFRNVFER 1105
>gi|163930853|dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 252/700 (36%), Positives = 379/700 (54%), Gaps = 90/700 (12%)
Query: 265 LIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKL-------YS 317
++ V ++++TP+K Y P + LSNRV+R+Y D FLR++F+DE + L Y+
Sbjct: 410 IVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYA 469
Query: 318 TVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE 377
+ +I+S + +RT I++RV S L G + +K+ LAFS +Q R+ + W FA P+
Sbjct: 470 ATIVREITSNSNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPK 529
Query: 378 LTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDS------------------- 418
+ I MG F +NV K AAR+GQ F+S+ + V S
Sbjct: 530 IRVPGIISWMGRFSN-RNVAKCAARMGQCFSSTYATVEVPSREVNSELPDIERNGYVFSD 588
Query: 419 NIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK--------------VTLRNNMFKYK 464
IG ISA+LA VA+K ++ PSA+QIRY G K ++LR +M K+
Sbjct: 589 GIGMISADLAIEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFD 648
Query: 465 SESTSLDILANSKYQ-----REGVARLR----LDNVFERKQREVVARLDAILTDSSKVQE 515
S T L+I + +++Q R+ V L D +F Q+E+++ LD +L DS +
Sbjct: 649 SNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFD 708
Query: 516 ALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMM 575
+ S AE N +L+ G+KP +EP L M + AS L +LR +ARIF+ +G+ +M
Sbjct: 709 VIT-ASCAEAGNTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLM 767
Query: 576 GCLDEKGTLEYGQ--------------------------------GLMVVAKKPCLHPGD 603
GCLDE G LE GQ GL+V+AK PCLHPGD
Sbjct: 768 GCLDELGELEQGQCFIQVSSPSLENCFVKHGPKFSDIKQNLQVVKGLVVIAKNPCLHPGD 827
Query: 604 MRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ--FQ 661
+R+L AVDVP+L H+ DC++FP KG+RPH+NE SGSD DG++YFV WD + IPP + +
Sbjct: 828 VRILEAVDVPSLSHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWI 887
Query: 662 PTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDL 721
P Y PA K L R V D+ ++F+ +V +SLG ICNAHVV+A A+ +C L
Sbjct: 888 PMNYEPAEVKQLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKL 947
Query: 722 VKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPST 781
+L+++ DF KTG T+P L+ K+YPDFM K++ Y+S+ I+G LYR+V + +
Sbjct: 948 AELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAE 1007
Query: 782 TTIKSFAKEGAMQF-YDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEM 840
+ + + YD+ +E+ G A D + + YD +L L+ Y + E E+
Sbjct: 1008 GEVSAGLEVVPKDIPYDSTLEILG--STAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEV 1065
Query: 841 LSRCIMEMAKSFDKKRD--LEAISFSVRSLRKEARAWFNK 878
++ I M K KK+ E + + +LRKE R F +
Sbjct: 1066 VTGHIWSMPKYSAKKQGELKERLKHAYNTLRKEFRNVFER 1105
>gi|206598331|gb|ACI16098.1| RNA-directed RNA polymerase 6a [Hordeum vulgare]
Length = 1047
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 251/698 (35%), Positives = 375/698 (53%), Gaps = 94/698 (13%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVL---SPQI 324
V ++++TP+ Y P++ SNRVVR Y D D FL+++F+DE + +L S VL + QI
Sbjct: 255 VRRLVITPTTAYCLPPQVERSNRVVRHYRDAADRFLKVTFMDEGMQQLNSNVLNFSAAQI 314
Query: 325 -----SSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA---SRP 376
S++ + +T +Y+RV + L G + +K+ LAFS++Q R+ + W FA +
Sbjct: 315 VKDLMSNSFLQHKTTVYKRVKTFLTEGFHMCGRKYSFLAFSSNQLRDRSAWFFAEDRTDR 374
Query: 377 ELTAADIRERMGDFREIKNVTKYAARLGQSFASS-------------------REALHVD 417
T IR+ MG F KNV K+ AR+GQ F+S+ R
Sbjct: 375 TRTVESIRKWMGRFTS-KNVAKHTARMGQCFSSTYATVVMHPHEVNECLEDVERNGYVFS 433
Query: 418 SNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK--------------VTLRNNMFKY 463
IGKI+ ELA VAKK PSA+QIRY G+K ++LR +M K+
Sbjct: 434 DGIGKITQELALEVAKKLQLTDNPPSAYQIRYAGFKGVIAVWEGENDGIQLSLRPSMHKF 493
Query: 464 KSESTSLDILANSKYQREGVARLRL---------DNVFERKQREVVARLDAILTDSSKVQ 514
+S T L++++ +K+Q + R + D +F + Q+++++ L+ ILTD+
Sbjct: 494 ESPHTVLEVVSWTKFQPGFLNRQIITLLSSLNVPDAIFSQMQKDMLSNLNNILTDTDVAF 553
Query: 515 EALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAM 574
+ + S A+ N +L+ G P EP L + ++ LL L ++RIF+ G+ +
Sbjct: 554 DVVT-TSCADEGNTAALMLSAGILPGTEPHLKALLLAIRSTQLLGLLEKSRIFVPKGRWL 612
Query: 575 MGCLDEKGTLEYGQ--------------------------------GLMVVAKKPCLHPG 602
MGCLDE G LE GQ G +V+AK PCLHPG
Sbjct: 613 MGCLDELGILEQGQCFIRASSPVLNNSLVKHGPRFSSANNNAETIVGTVVMAKNPCLHPG 672
Query: 603 DMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ--F 660
D+R+L A+DVPALHH+VDC++FP GERPH NE SGSD DG++YFV WD IPP + +
Sbjct: 673 DVRILEAIDVPALHHLVDCLVFPKNGERPHANEASGSDLDGDLYFVTWDEKLIPPGKKSW 732
Query: 661 QPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPD 720
P Y+PA K L R VT D+ ++F +VN+ LG I NAHVV+A AM +C
Sbjct: 733 NPMDYSPAEAKQLPRQVTQSDIVDFFLKNMVNEKLGPISNAHVVHADMSEYGAMDEKCIQ 792
Query: 721 LVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPS 780
L +L++ DF KTG ++P LR K+YPDFM K D Y+S+ I+G LYR + + S
Sbjct: 793 LAELAAFAVDFPKTGKIVSMPPALRPKLYPDFMGKDDAISYKSEKILGRLYRSIQEASSS 852
Query: 781 TTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEM 840
+ + YDTDMEV G + ++ + Y+ +L L+ YG++TEAE+
Sbjct: 853 DLVPEETCTLNDLP-YDTDMEVPGAADFLSS--AWQCKCSYEAQLDALLKQYGVRTEAEL 909
Query: 841 LSRCIMEMAKSFDKKR-DL-EAISFSVRSLRKEARAWF 876
++ I + K +K+ D+ E + + +LRKE RA F
Sbjct: 910 VTEHIWSLPKYNSRKQGDIKERLKNAYSALRKEYRAIF 947
>gi|296082033|emb|CBI21038.3| unnamed protein product [Vitis vinifera]
Length = 1035
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 255/752 (33%), Positives = 397/752 (52%), Gaps = 91/752 (12%)
Query: 222 ALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFC 281
AL+ + R +D L+ ++ + + + SP D ++ V ++++TPSK Y
Sbjct: 209 ALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDD--IVEVRRLVITPSKAYCL 266
Query: 282 GPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLS-------PQISSTNGERRTR 334
PE+ LSNRV+R+Y + D FLR++F+DE + + + VL+ I+S + ++TR
Sbjct: 267 PPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIVKVITSNSFPQKTR 326
Query: 335 IYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIK 394
+++RV + L +G + +K+ LAFS++Q R+ + W FA + + I+ MG F +
Sbjct: 327 VFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVRAIKSWMGKFTN-R 385
Query: 395 NVTKYAARLGQSFASSREALHVDS------------------NIGKISAELAETVAKKCG 436
NV K AAR+GQ F+S+ + V S IGKI +LA VA+K
Sbjct: 386 NVAKCAARMGQCFSSTYATVEVPSWEVKELPDIKRNGYDFSDGIGKIVPDLAMEVAEKLK 445
Query: 437 YAIYTPSAFQIRYGGYK--------------VTLRNNMFKYKSESTSLDILANSKYQ--- 479
TPSA+QIRY G K ++ R +M K+ S+ T L+I + +++Q
Sbjct: 446 LE-GTPSAYQIRYAGCKGVVACWPSDNDGIRLSWRPSMNKFLSDHTILEICSWTRFQPGF 504
Query: 480 --REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELL 533
R+ V L D +F + Q ++++L+ +LTD+ + L + S AE N +L
Sbjct: 505 LNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVL-IASCAEQGNTAAIML 563
Query: 534 NCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ----- 588
+ G+KP EP L M A+ LR +ARIF+ +G+ +MGCLDE G LE GQ
Sbjct: 564 SAGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQV 623
Query: 589 --------------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCV 622
G++ +AK PCLHPGD+R+L AVD P L H+VDC+
Sbjct: 624 SSPSLENCFLKHGSRFSAQKNLKVIKGIVAIAKNPCLHPGDVRILEAVDAPGLEHLVDCL 683
Query: 623 LFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ--FQPTAYTPAPEKILARDVTIE 680
+FP KG+RPH+NE SGSD DG++YFV W+ IPP + + P Y A K LAR+VT
Sbjct: 684 VFPQKGDRPHSNEASGSDLDGDLYFVTWEETLIPPSKQSWPPMQYDSAEAKALAREVTSL 743
Query: 681 DVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATI 740
D+ ++F +VN++LG ICNAHVV+A A+ C DL + ++ DF KTG T+
Sbjct: 744 DIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAATAVDFPKTGKLVTL 803
Query: 741 PSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQF-YDTD 799
P L+ K+YPDFM K++ Y S I+G +YR++ + S GA + +D D
Sbjct: 804 PPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSESSEQIFGADKVPFDED 863
Query: 800 MEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRD-- 857
+ + G + D + ++ YD +L L+ Y +K E E+++ + M K +K+
Sbjct: 864 LGIPGSADFIN--DAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMPKYKSRKQGEL 921
Query: 858 LEAISFSVRSLRKEARAWFNKKKNDSDSSHKD 889
E + + SL+KE R F K +D D D
Sbjct: 922 TERLKHAYSSLKKEFRQIFEKMNSDFDQLTDD 953
>gi|225430281|ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
Length = 1197
Score = 404 bits (1039), Expect = e-109, Method: Compositional matrix adjust.
Identities = 255/752 (33%), Positives = 397/752 (52%), Gaps = 91/752 (12%)
Query: 222 ALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFC 281
AL+ + R +D L+ ++ + + + SP D ++ V ++++TPSK Y
Sbjct: 371 ALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDD--IVEVRRLVITPSKAYCL 428
Query: 282 GPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLS-------PQISSTNGERRTR 334
PE+ LSNRV+R+Y + D FLR++F+DE + + + VL+ I+S + ++TR
Sbjct: 429 PPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIVKVITSNSFPQKTR 488
Query: 335 IYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIK 394
+++RV + L +G + +K+ LAFS++Q R+ + W FA + + I+ MG F +
Sbjct: 489 VFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVRAIKSWMGKFTN-R 547
Query: 395 NVTKYAARLGQSFASSREALHVDS------------------NIGKISAELAETVAKKCG 436
NV K AAR+GQ F+S+ + V S IGKI +LA VA+K
Sbjct: 548 NVAKCAARMGQCFSSTYATVEVPSWEVKELPDIKRNGYDFSDGIGKIVPDLAMEVAEKLK 607
Query: 437 YAIYTPSAFQIRYGGYK--------------VTLRNNMFKYKSESTSLDILANSKYQ--- 479
TPSA+QIRY G K ++ R +M K+ S+ T L+I + +++Q
Sbjct: 608 LE-GTPSAYQIRYAGCKGVVACWPSDNDGIRLSWRPSMNKFLSDHTILEICSWTRFQPGF 666
Query: 480 --REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELL 533
R+ V L D +F + Q ++++L+ +LTD+ + L + S AE N +L
Sbjct: 667 LNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVL-IASCAEQGNTAAIML 725
Query: 534 NCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ----- 588
+ G+KP EP L M A+ LR +ARIF+ +G+ +MGCLDE G LE GQ
Sbjct: 726 SAGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQV 785
Query: 589 --------------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCV 622
G++ +AK PCLHPGD+R+L AVD P L H+VDC+
Sbjct: 786 SSPSLENCFLKHGSRFSAQKNLKVIKGIVAIAKNPCLHPGDVRILEAVDAPGLEHLVDCL 845
Query: 623 LFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ--FQPTAYTPAPEKILARDVTIE 680
+FP KG+RPH+NE SGSD DG++YFV W+ IPP + + P Y A K LAR+VT
Sbjct: 846 VFPQKGDRPHSNEASGSDLDGDLYFVTWEETLIPPSKQSWPPMQYDSAEAKALAREVTSL 905
Query: 681 DVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATI 740
D+ ++F +VN++LG ICNAHVV+A A+ C DL + ++ DF KTG T+
Sbjct: 906 DIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAATAVDFPKTGKLVTL 965
Query: 741 PSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQF-YDTD 799
P L+ K+YPDFM K++ Y S I+G +YR++ + S GA + +D D
Sbjct: 966 PPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSESSEQIFGADKVPFDED 1025
Query: 800 MEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRD-- 857
+ + G + D + ++ YD +L L+ Y +K E E+++ + M K +K+
Sbjct: 1026 LGIPGSADFIN--DAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMPKYKSRKQGEL 1083
Query: 858 LEAISFSVRSLRKEARAWFNKKKNDSDSSHKD 889
E + + SL+KE R F K +D D D
Sbjct: 1084 TERLKHAYSSLKKEFRQIFEKMNSDFDQLTDD 1115
>gi|297819596|ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis lyrata subsp. lyrata]
gi|297323519|gb|EFH53940.1| RNA-dependent RNA polymerase 6 [Arabidopsis lyrata subsp. lyrata]
Length = 1197
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 246/698 (35%), Positives = 375/698 (53%), Gaps = 91/698 (13%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLS------ 321
+ ++++TP++ Y PE+ LSNRV+R Y + FLR++F+DE + + S VLS
Sbjct: 411 IRRLVITPTRAYCLPPEVELSNRVLRKYRAVAERFLRVTFMDESMQTINSNVLSYFVAPI 470
Query: 322 -PQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTA 380
++S++ ++T +++RV S L +G + +K+ LAFS +Q R+++ W FA +
Sbjct: 471 VKDLTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDSSAWFFAEDGKTRV 530
Query: 381 ADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN-------------------IG 421
+DI+ MG F++ KNV K AAR+G F+S+ + V N IG
Sbjct: 531 SDIKAWMGKFKD-KNVAKCAARMGLCFSSTYATVDVMPNEVNTELPDIERNGYVFSDGIG 589
Query: 422 KISAELAETVAKKCGYAIY-TPSAFQIRYGGYK--------------VTLRNNMFKYKSE 466
I+ +LA+ V +K ++ TP A+QIRY G+K + LR++M K+ S+
Sbjct: 590 TITPDLADEVMEKLKLDLHCTPCAYQIRYAGFKGVVARWPSKGDGIRLALRDSMKKFNSK 649
Query: 467 STSLDILANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEAL 517
T L+I + +++Q R+ + L + D +F Q ++ +L+ IL D+ E L
Sbjct: 650 HTILEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVL 709
Query: 518 ELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGC 577
S AE N +L+ G+KP EP L M + + L LR ++RIF+ +G+ +MGC
Sbjct: 710 T-ASCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGC 768
Query: 578 LDEKGTLEYGQ--------------------------------GLMVVAKKPCLHPGDMR 605
LDE G LE+GQ G + +AK PCLHPGD+R
Sbjct: 769 LDEAGKLEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVR 828
Query: 606 VLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ--FQPT 663
+L AVDVP LHHM DC++FP KG+RPHTNE SGSD DG++YFV WD IPP + +
Sbjct: 829 ILEAVDVPQLHHMYDCLIFPKKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAM 888
Query: 664 AYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVK 723
Y A EK L R V +D+ ++FA + N+ LG ICNAHVV+A AM C L +
Sbjct: 889 HYDAAEEKTLGRAVNHQDIIDFFARNMANEHLGTICNAHVVHADRSEYGAMDEECVLLAE 948
Query: 724 LSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTT 783
L++ D KTG ++P L+ K+YPDFM K+D Y+S I+G LYR V +
Sbjct: 949 LAATAVDSPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSSKILGRLYRRVKEVYDEDAE 1008
Query: 784 IKSFAKEGAMQF-YDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLS 842
S YD D+E+ GF+++ + + ++ YD +L L+ Y ++ E E+++
Sbjct: 1009 ASSEESSDPSDIPYDIDLEIPGFEDLIPE--AWGHKCSYDRQLIGLLGQYKVQKEEEIVT 1066
Query: 843 RCIMEMAKSFDKKR-DL-EAISFSVRSLRKEARAWFNK 878
I M K KK+ DL E + S SL+KE R F +
Sbjct: 1067 GHIWSMPKYTSKKQCDLKERLKHSYNSLKKEFRKVFEE 1104
>gi|397529811|gb|AFO53516.1| RNA-dependent RNA polymerase 6 [Solanum lycopersicum]
Length = 1197
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 248/709 (34%), Positives = 380/709 (53%), Gaps = 96/709 (13%)
Query: 265 LIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKL-------YS 317
++ V ++++TP+K Y P + LSNRV+R Y D FLR++F+DE + L Y+
Sbjct: 410 VVEVRRLVITPTKAYCLPPTVELSNRVLRKYKHISDRFLRVTFMDEGMRNLNRNALTYYA 469
Query: 318 TVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE 377
+ +I+S++ +RT I++RV + G + +++ LAFS +Q R+ + W FA PE
Sbjct: 470 ANIVREITSSSNPQRTGIFQRVKIIVNKGFYLCGRRYSFLAFSANQLRDRSAWFFAETPE 529
Query: 378 LTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHV-------------------DS 418
+ I MG F +NV K AAR+GQ F+S+ + V
Sbjct: 530 IRVTSIINWMGKFGN-RNVAKCAARMGQCFSSTYATVEVLPSEVNSELPDIERNGYVFSD 588
Query: 419 NIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK--------------VTLRNNMFKYK 464
IG ++A+L+ VA K ++ P A+QIRY G K ++LR +M K+
Sbjct: 589 GIGMMTADLSIEVAAKLQLSVNPPCAYQIRYAGCKGVVACWPAEKDGIRLSLRPSMKKFD 648
Query: 465 SESTSLDILANSKYQREGVARLRL---------DNVFERKQREVVARLDAILTDSSKVQE 515
S T L+I + ++ Q + R + D +F Q+E++++LD IL DS +
Sbjct: 649 SNHTILEICSWTRLQPGFLNRQIITLLSSLEVKDEMFWEMQKEMLSKLDKILVDSDVAFD 708
Query: 516 ALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMM 575
+ S AE N +L+ G+KP +EP L M + A+ L +LR + R+F+ +G+ +M
Sbjct: 709 VIT-ASCAEAGNTAAIMLSAGFKPQSEPHLRGMLASIRAAQLGDLRNKTRMFVTSGRWLM 767
Query: 576 GCLDEKGTLEYGQ--------------------------------GLMVVAKKPCLHPGD 603
GCLDE G LE GQ GL+V+AK PCLHPGD
Sbjct: 768 GCLDELGELEQGQCFIQVSSPSLETCFVKHGPEFSEIKKNLQVVKGLVVIAKNPCLHPGD 827
Query: 604 MRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ--FQ 661
+R+L AVDVP LHH+ DC++FP KG+RPH+NE SGSD DG++YFV WD + IPP + +
Sbjct: 828 VRILEAVDVPGLHHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWM 887
Query: 662 PTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDL 721
P AY PA K L R V D+ ++F +V +SLG ICNAHVV+A AM +C L
Sbjct: 888 PMAYAPAEAKQLGRQVQHTDIIDFFLKNMVQESLGEICNAHVVHADLSEFGAMDEKCLKL 947
Query: 722 VKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGI---- 777
+L+++ DF KTG T+P L+ K+YPDFM K+ YES+ I+G LYR+V +
Sbjct: 948 AELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEPFQSYESKKILGKLYRQVIDVYDAE 1007
Query: 778 APSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTE 837
++ ++ K+ YDT++E+ G+++ D + ++ YD +L L+ Y + E
Sbjct: 1008 GGESSGLEYVPKDIP---YDTNLEIPGYEDFID--DAWNHKCSYDGQLNGLLGQYKVNGE 1062
Query: 838 AEMLSRCIMEMAKSFDKKRD--LEAISFSVRSLRKEARAWFNKKKNDSD 884
E+++ I M K KK+ E + + LRKE R F + + D D
Sbjct: 1063 EEVVTGHIWSMPKYSAKKQGELKERLKHAYNMLRKEFRNVFEQMEPDFD 1111
>gi|356507732|ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Glycine max]
Length = 1204
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 249/702 (35%), Positives = 370/702 (52%), Gaps = 90/702 (12%)
Query: 265 LIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKL-------YS 317
++ V +++VTPSK Y PE+ LSNRV+R + + D FLR++F+DE + + Y
Sbjct: 412 IVEVRRLVVTPSKAYCIPPEVELSNRVLRKFREVSDCFLRVTFMDEGMQTINVNALNYYV 471
Query: 318 TVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE 377
+ +I+S + ++T+IY+RV + L G +K+ LAFS++Q R+ + W FA +
Sbjct: 472 APIVKEITSNSFSQKTKIYKRVKTILEEGFYFCGRKYSFLAFSSNQLRDRSAWFFAED-K 530
Query: 378 LTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN------------------ 419
+ DIR MG F + +NV K AAR+GQ F+S+ + V +N
Sbjct: 531 IRCDDIRNWMGKFNQ-RNVAKCAARMGQCFSSTYATVEVAANEVNSMLPDVERNNYIFSD 589
Query: 420 -IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK--------------VTLRNNMFKYK 464
IG I+ +LA VA+K PSA+QIRY G+K ++LR +M K++
Sbjct: 590 GIGVITHDLAREVAEKLKLD-NVPSAYQIRYAGFKGVVASWPAKGDGVRLSLRPSMNKFQ 648
Query: 465 SESTSLDILANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQE 515
S L+I A +++Q R+ + L D +F + Q ++ +L+ +L D+ +
Sbjct: 649 STHNILEICAWTRFQPGFLNRQIITLLSALGVPDEIFWQMQEAMLLKLNQMLVDADIAFD 708
Query: 516 ALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMM 575
L S AE+ N +L+CG+ P EP L M + A+ L LR ++RIF+ +G+ +M
Sbjct: 709 VLT-KSCAEHGNAAAIMLSCGFSPLTEPHLRGMLTSTRAAQLWGLREKSRIFVSSGRWLM 767
Query: 576 GCLDEKGTLEYGQ-------------------------------GLMVVAKKPCLHPGDM 604
G LDE G LE GQ G +V+AK PCLHPGD+
Sbjct: 768 GVLDELGVLEQGQCFVQVSTPSLENCFSKHGSRFSETKNLHVVKGFVVIAKNPCLHPGDV 827
Query: 605 RVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ--FQP 662
RVL AVD P LHH+ DC++FP KG+RPHTNE SGSD DG++YFV WD + IPP + + P
Sbjct: 828 RVLEAVDAPDLHHLNDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIP 887
Query: 663 TAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLV 722
Y P K+L R V D+ E+F +VN+ LG ICNAHVV+A S A+ +C L
Sbjct: 888 MEYAPQESKLLTRQVMTRDIIEFFVRNMVNEHLGAICNAHVVHADSSDYGALDEKCIHLA 947
Query: 723 KLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTT 782
+L++ DF KTG T+P L+ K+YPDFM K+ Y S I+G LYR +
Sbjct: 948 ELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKERHQSYRSNKILGRLYRHIKDAYDEDI 1007
Query: 783 TIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLS 842
YD D+EV G + D ++ + YD +L L+ Y +K E E+++
Sbjct: 1008 EAPYLNFVTGDIPYDKDLEVPGSADFIA--DAWEQKCSYDGQLSGLIGQYKVKREEEVVT 1065
Query: 843 RCIMEMAKSFDKKRD--LEAISFSVRSLRKEARAWFNKKKND 882
I M K +K+ E + S +L+KE R F K +D
Sbjct: 1066 GQIWSMPKYNSRKQGELKERLKHSYSALKKEFRYTFEKLNSD 1107
>gi|356515444|ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Glycine max]
Length = 1204
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 248/702 (35%), Positives = 370/702 (52%), Gaps = 90/702 (12%)
Query: 265 LIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKL-------YS 317
++ V ++++TPSK Y PE+ LSNRV+R + + D FLR++F+DE + + Y
Sbjct: 412 IVEVRRLVITPSKAYCIPPEVELSNRVLRKFREVSDCFLRVTFMDEGMQTINVNALNYYV 471
Query: 318 TVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE 377
+ +I+S + +RT+IY+RV + L G +K+ LAFS++Q R+ + W FA +
Sbjct: 472 APIVKEITSNSFSQRTKIYKRVKTILEQGFYFCGRKYSFLAFSSNQLRDRSAWFFAED-K 530
Query: 378 LTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN------------------ 419
+ DIR MG F + +NV K AAR+GQ F+S+ + V +N
Sbjct: 531 IRCDDIRNWMGKFNQ-RNVAKCAARMGQCFSSTYATVEVAANEVNSMLPDVERNNYIFSD 589
Query: 420 -IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK--------------VTLRNNMFKYK 464
IG I+ +LA VA+K PSA+QIRY G+K ++LR +M K++
Sbjct: 590 GIGVITHDLAREVAEKLKLD-NVPSAYQIRYAGFKGVVASWPAKGDGVRLSLRPSMNKFQ 648
Query: 465 SESTSLDILANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQE 515
S L+I A +++Q R+ + L D VF + Q ++ +L+ +L D+ +
Sbjct: 649 STHNILEICAWTRFQPGFLNRQIITLLSALGVPDEVFWQMQEAMLLKLNQMLVDADIAFD 708
Query: 516 ALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMM 575
L S AE+ N +L+CG+ P EP L M + A+ L LR ++RIF+ +G+ +M
Sbjct: 709 VLT-KSCAEHGNAAAIMLSCGFSPLTEPHLRGMLTSTRAAQLWGLREKSRIFVSSGRWLM 767
Query: 576 GCLDEKGTLEYGQ-------------------------------GLMVVAKKPCLHPGDM 604
G LDE G LE GQ G +++AK PCLHPGD+
Sbjct: 768 GVLDESGVLEQGQCFVQVSTPSLENCFSKHGSRFSETKNLHVVKGFVIIAKNPCLHPGDV 827
Query: 605 RVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ--FQP 662
RVL AVD P LHH+ DC++FP KG+RPHTNE SGSD DG++YFV WD + IPP + + P
Sbjct: 828 RVLEAVDAPDLHHLNDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIP 887
Query: 663 TAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLV 722
Y P K+ R V D+ E+F +VN+ LG ICNAHVV+A S A+ +C L
Sbjct: 888 MEYAPQESKLKTRQVMTRDIIEFFVRNMVNEHLGAICNAHVVHADSSDYGALDEKCIHLA 947
Query: 723 KLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTT 782
+L++ DF KTG T+P L+ K+YPDFM K+ Y S+ I+G LYR +
Sbjct: 948 ELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKERHQSYRSKKILGRLYRRIKDAYDEDI 1007
Query: 783 TIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLS 842
YD D+EV G + D ++ + YD +L L+ Y +K E E+++
Sbjct: 1008 DAPYLNFVTGDIPYDKDLEVPGSADFIA--DAWEQKCSYDGQLSGLLGQYKVKREEEVVT 1065
Query: 843 RCIMEMAKSFDKKRD--LEAISFSVRSLRKEARAWFNKKKND 882
I M K +K+ E + S +L+KE R F K +D
Sbjct: 1066 GQIWSMPKYNSRKQGELKERLKHSYSALKKEFRHTFEKLNSD 1107
>gi|449499234|ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
Length = 1197
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 243/700 (34%), Positives = 367/700 (52%), Gaps = 93/700 (13%)
Query: 265 LIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKL----YSTVL 320
++ + ++++TPSK Y PE+ LSNRV+R Y D D FLR++F+DE + K+ Y+ +
Sbjct: 409 IVEIRRLVITPSKAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYV 468
Query: 321 SP---QISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE 377
+P +I+S++ ++T+I+ R+ L++G + +K+ LA+S++Q R+ + W FA
Sbjct: 469 APIVKEITSSSFPQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKS 528
Query: 378 LTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN------------------ 419
++ I MG F KNV K AAR+GQ F+S+ + V N
Sbjct: 529 ISVDAILGWMGKFTN-KNVAKCAARIGQCFSSTYATIEVPRNMVNHDLSDVERNGYVFSD 587
Query: 420 -IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK--------------VTLRNNMFKYK 464
IG I+ +LA+ VA K P A+QIRY GYK + LR +M K++
Sbjct: 588 GIGTITPDLAQEVADKLKMDGSPPCAYQIRYAGYKGVVATWPSKKDGIRLALRPSMNKFE 647
Query: 465 SESTSLDILANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQE 515
S L+I + +++Q R+ + L D +F Q ++++LD ++TD+ E
Sbjct: 648 SNHRILEICSWTRFQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFE 707
Query: 516 ALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMM 575
L S AE N +L+ G++P EP L M A+ L LR +ARIF+ G+ M
Sbjct: 708 VLT-ASCAEQGNAAAIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCM 766
Query: 576 GCLDEKGTLEYGQ--------------------------------GLMVVAKKPCLHPGD 603
GC DE G L+ GQ G +V+AK PCLHPGD
Sbjct: 767 GCFDESGVLQEGQCFIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGD 826
Query: 604 MRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ--FQ 661
+R+L AVD P LHH+ DC++FP GERPHTNE SGSD DG++YF WD + IPP + +
Sbjct: 827 VRILEAVDAPELHHLYDCLVFPRNGERPHTNEASGSDLDGDLYFTTWDGNLIPPSKKSWP 886
Query: 662 PTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDL 721
P Y PA K L R +T D+ E+FA ++N+SLG ICNAHVV+A A+ C L
Sbjct: 887 PMEYAPAEVKTLQRKITRWDIMEFFAKNMINESLGTICNAHVVHADRSKHGALDENCIQL 946
Query: 722 VKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPST 781
+L++ DF KTG T+P L+ K+YPDFM K+ Y+S I+G +YR +
Sbjct: 947 SELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDD 1006
Query: 782 TTIKSFA---KEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEA 838
I S G + YD D+EV G ++ + + + YD +L L+ Y + E
Sbjct: 1007 DMITSRELNFTPGDVH-YDVDLEVAGAEDFIAE--AWDQKCSYDGQLSGLLGQYKVNREE 1063
Query: 839 EMLSRCIMEMAKSFDKKRD--LEAISFSVRSLRKEARAWF 876
E+++ I M K +K+ E + S +L+K+ R F
Sbjct: 1064 EIVTGHIWSMPKYVSRKQGELKEKLKHSYSTLKKDFRQVF 1103
>gi|449441914|ref|XP_004138727.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
gi|316989907|gb|ADU77019.1| RNA-dependent RNA polymerase 6 [Cucumis sativus]
Length = 1197
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 243/700 (34%), Positives = 367/700 (52%), Gaps = 93/700 (13%)
Query: 265 LIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKL----YSTVL 320
++ + ++++TPSK Y PE+ LSNRV+R Y D D FLR++F+DE + K+ Y+ +
Sbjct: 409 IVEIRRLVITPSKAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYV 468
Query: 321 SP---QISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE 377
+P +I+S++ ++T+I+ R+ L++G + +K+ LA+S++Q R+ + W FA
Sbjct: 469 APIVKEITSSSFPQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKS 528
Query: 378 LTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN------------------ 419
++ I MG F KNV K AAR+GQ F+S+ + V N
Sbjct: 529 ISVDAILGWMGKFTN-KNVAKCAARIGQCFSSTYATIEVPRNMVNHDLSDVERNGYVFSD 587
Query: 420 -IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK--------------VTLRNNMFKYK 464
IG I+ +LA+ VA K P A+QIRY GYK + LR +M K++
Sbjct: 588 GIGTITPDLAQEVADKLKMDGSPPCAYQIRYAGYKGVVATWPSKKDGIRLALRPSMNKFE 647
Query: 465 SESTSLDILANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQE 515
S L+I + +++Q R+ + L D +F Q ++++LD ++TD+ E
Sbjct: 648 SNHRILEICSWTRFQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFE 707
Query: 516 ALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMM 575
L S AE N +L+ G++P EP L M A+ L LR +ARIF+ G+ M
Sbjct: 708 VLT-ASCAEQGNAAAIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCM 766
Query: 576 GCLDEKGTLEYGQ--------------------------------GLMVVAKKPCLHPGD 603
GC DE G L+ GQ G +V+AK PCLHPGD
Sbjct: 767 GCFDESGVLQEGQCFIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGD 826
Query: 604 MRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ--FQ 661
+R+L AVD P LHH+ DC++FP GERPHTNE SGSD DG++YF WD + IPP + +
Sbjct: 827 VRILEAVDAPELHHLYDCLVFPRNGERPHTNEASGSDLDGDLYFTTWDGNLIPPSKKSWP 886
Query: 662 PTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDL 721
P Y PA K L R +T D+ E+FA ++N+SLG ICNAHVV+A A+ C L
Sbjct: 887 PMEYAPAEVKTLQRKITRWDIMEFFAKNMINESLGTICNAHVVHADRSKHGALDENCIQL 946
Query: 722 VKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPST 781
+L++ DF KTG T+P L+ K+YPDFM K+ Y+S I+G +YR +
Sbjct: 947 SELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDD 1006
Query: 782 TTIKSFA---KEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEA 838
I S G + YD D+EV G ++ + + + YD +L L+ Y + E
Sbjct: 1007 DMITSRELNFTPGDVH-YDVDLEVAGAEDFIAE--AWDQKCSYDGQLSGLLGQYKVNREE 1063
Query: 839 EMLSRCIMEMAKSFDKKRD--LEAISFSVRSLRKEARAWF 876
E+++ I M K +K+ E + S +L+K+ R F
Sbjct: 1064 EIVTGHIWSMPKYVSRKQGELKEKLKHSYSTLKKDFRQVF 1103
>gi|242057591|ref|XP_002457941.1| hypothetical protein SORBIDRAFT_03g022880 [Sorghum bicolor]
gi|241929916|gb|EES03061.1| hypothetical protein SORBIDRAFT_03g022880 [Sorghum bicolor]
Length = 1207
Score = 400 bits (1029), Expect = e-108, Method: Compositional matrix adjust.
Identities = 248/700 (35%), Positives = 369/700 (52%), Gaps = 102/700 (14%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLS------ 321
V +++VTP+K Y PE+ SNRV+R Y + D FLR++F+DE + L S VL+
Sbjct: 425 VRRLVVTPTKAYCLPPEVERSNRVIRHYREVTDRFLRVTFMDEGMQLLNSNVLNFSAAQI 484
Query: 322 -PQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTA 380
+ S + +T +Y+R+ + L G + +K+ LAFS++Q R+ + W FA T
Sbjct: 485 VKDLMSNSFLHKTTVYKRIKTFLTEGFHMCGRKYSFLAFSSNQLRDRSAWFFAEDRMRTV 544
Query: 381 ADIRERMGDFREIKNVTKYAARLGQSFASS-------------------REALHVDSNIG 421
IR+ MG F KNV K+AAR+GQ F+S+ R IG
Sbjct: 545 ETIRKWMGRFTS-KNVAKHAARMGQCFSSTYATVVMQPHEVNECLEEVERNGYIFSDGIG 603
Query: 422 KISAELAETVAKKCGYAIYTPSAFQIRYGGYK--------------VTLRNNMFKYKSES 467
KI+ +LA VA+K PSA+QIRY G+K ++LR +M K++S
Sbjct: 604 KITCDLALEVAQKLRLTDNPPSAYQIRYAGFKGVIAVWEGENDGIRLSLRPSMHKFESNH 663
Query: 468 TSLDILANSKYQREGVARLRL---------DNVFERKQREVVARLDAILTDSSKVQEALE 518
L++++ +K+Q + R + D +F + Q +++ L+ IL+D+ V +
Sbjct: 664 NVLEVVSWTKFQPGFLNRQIITLLSSLNVPDAIFSQMQEAMLSNLNNILSDTD-VAFDIV 722
Query: 519 LMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCL 578
S AE N +L+ G P EP L M +S LL L + RIF+ G+ +MGCL
Sbjct: 723 TTSCAEQGNTAALMLSAGISPGTEPHLKAMLLAIRSSQLLGLLEKTRIFVPKGRWLMGCL 782
Query: 579 DEKGTLEYGQ--------------------------------GLMVVAKKPCLHPGDMRV 606
DE G LE GQ G +V+AK PCLHPGD+R+
Sbjct: 783 DELGILEQGQCFIRASSPSLNNCLVKHGPRFSSANKNAETIVGTIVMAKNPCLHPGDVRI 842
Query: 607 LRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ--FQPTA 664
L AVDVP LHH+VDC++FP KGERPH NE SGSD DG++YFV WD + IPP + + P
Sbjct: 843 LEAVDVPELHHLVDCLVFPKKGERPHANEASGSDLDGDLYFVTWDENLIPPGKKSWNPMD 902
Query: 665 YTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKL 724
Y+P K L R V+ D+ ++F +VN+ LG I NAHVV+A AM +C L +L
Sbjct: 903 YSPTEAKQLPRAVSPHDIVDFFLKNMVNEKLGPISNAHVVHADMSEYGAMDEKCIQLAEL 962
Query: 725 SSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREV------NGIA 778
++ DF KTG ++P LR K+YPDFM K+D Y+S+ I+G LYR + + +
Sbjct: 963 AATAVDFPKTGKIVSMPPSLRPKLYPDFMGKEDAISYKSEKILGRLYRSIQEASSGDLVP 1022
Query: 779 PSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEA 838
T T+ YD DMEV G + ++ + Y+ +L L++ YG++TEA
Sbjct: 1023 EETCTLNDLP-------YDADMEVPGATDFLSS--AWECKCSYETQLNALLNQYGVRTEA 1073
Query: 839 EMLSRCIMEMAK-SFDKKRDL-EAISFSVRSLRKEARAWF 876
E+++ I + K S K+ D+ E + + +L K+ R+ F
Sbjct: 1074 ELVTEHIWSLPKYSSRKQGDIKERLKNAYSALHKDFRSIF 1113
>gi|357119219|ref|XP_003561343.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2-like
[Brachypodium distachyon]
Length = 1208
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 251/723 (34%), Positives = 384/723 (53%), Gaps = 95/723 (13%)
Query: 240 LREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEI 299
L +R+ S+ + S V D + V ++++TP+ P+I LSNRV+R Y +
Sbjct: 402 LEHAHRRVASNPKLLRSGKVGDDN--VEVRRLVITPTSASCLPPQIELSNRVLRHYHEVA 459
Query: 300 DNFLRLSFVDEDLGKLYSTVL----SPQISS---TNGERRTRIYERVLSTLRNGIVIGDK 352
D FLR++F+DE + L + VL +P + + + +++T +Y+RV L G + +
Sbjct: 460 DRFLRVTFMDEGMQSLNNNVLNFYTAPIVKALRPNSFQQKTAVYKRVKMFLTEGFHMCGR 519
Query: 353 KFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSRE 412
K+ LAFS++Q R+ + W FA + T IR+ MG F KNV K+AAR+GQ F+S+
Sbjct: 520 KYSFLAFSSNQLRDRSAWFFAEDSKTTVESIRKWMGRFTS-KNVAKHAARMGQCFSSTYA 578
Query: 413 ALHVDSN-------------------IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK 453
+ V + IGKI+ +LA VA+K PSA+QIRY GYK
Sbjct: 579 TVMVKPDEVNESLEDVERNNYTFSDGIGKITPDLAMEVAEKLQLMDSPPSAYQIRYAGYK 638
Query: 454 --------------VTLRNNMFKYKSESTSLDILANSKYQREGVARLRL---------DN 490
++LR +M K++S+ + L++++ +++Q + R + D+
Sbjct: 639 GVIAVWQGNNNGIRLSLRPSMKKFESKHSVLEVVSWTRFQPGFLNRQIILLLSSLNVSDD 698
Query: 491 VFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQ 550
+F + Q ++ L+ IL DS E + S AE N +L+ G+ P EP L M
Sbjct: 699 IFSQMQESMLFNLNKILLDSDVAFEVVT-TSCAEQGNTAALMLSAGFGPGTEPHLRGMLL 757
Query: 551 TFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ---------------------- 588
++ L +L + RIF+ G+ +MGCLDE G LE GQ
Sbjct: 758 AIRSAQLQDLLEKTRIFVPKGRWLMGCLDELGVLEQGQCFVQASAASLDRCFLKHGSRFS 817
Query: 589 ---------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGS 639
G +V+AK PCLHPGD+R+L AVDVP LHH+VDC++FP KGERPH NE SGS
Sbjct: 818 ANKNTDIIVGTVVIAKNPCLHPGDVRILEAVDVPELHHLVDCLVFPQKGERPHPNEASGS 877
Query: 640 DQDGEIYFVCWDHDRIPPLQ--FQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGI 697
D DG++YFV WD +PP + + P Y+PA K R V+ D+ ++F +VN++LG
Sbjct: 878 DLDGDLYFVTWDEKLVPPGKKSWNPMDYSPAEAKQQQRQVSQHDIVDFFLKNMVNENLGP 937
Query: 698 ICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQD 757
ICNAHVV+A AM +C L +L++ DF KTG T+P LR KIYPDFM K++
Sbjct: 938 ICNAHVVHADLSEYGAMDEKCIRLAELAATAVDFPKTGKLVTMPPELRPKIYPDFMLKEE 997
Query: 758 KTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQF--DGF 815
Y+S+ I+G LYR + A + A YDTD+EV G A +F +
Sbjct: 998 SRSYKSEKILGRLYRSIQE-ASGGDLVSEEACTLNDLLYDTDLEVPG----ASRFLTSAW 1052
Query: 816 KYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRD--LEAISFSVRSLRKEAR 873
+ + Y+ +L L++ + TEAE+++ + + K +K+ E I + +L+KE R
Sbjct: 1053 ECKCNYEGQLNVLLNQSRVCTEAELVTGHVWSLPKYNSRKQGEIRERIKNAYAALQKEYR 1112
Query: 874 AWF 876
+ F
Sbjct: 1113 SVF 1115
>gi|75330108|sp|Q8LHH9.1|SHL2_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase SHL2; AltName:
Full=Protein SHOOTLESS 2
gi|21328146|dbj|BAC00725.1| putative RNA-dependent RNA polymerase [Oryza sativa Japonica Group]
gi|157279691|dbj|BAF80151.1| SHOOTLESS2 [Oryza sativa Japonica Group]
Length = 1218
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 241/700 (34%), Positives = 377/700 (53%), Gaps = 90/700 (12%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSP----- 322
V ++++TP++ Y PE+ SNRV+R Y + D FLR++F+DE + L + VL+
Sbjct: 436 VRRLVITPTRAYCLPPEVERSNRVLRHYHEVADRFLRVTFMDEGMQVLNNNVLNSFTAPI 495
Query: 323 --QISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTA 380
+ S +++T +Y+RV L G + +K+ LAFS++Q R+ + W FA + T
Sbjct: 496 VKDLMSNFFQQKTTVYKRVRMLLTEGFHMCGRKYSFLAFSSNQLRDKSAWFFAEDRKTTV 555
Query: 381 ADIRERMGDFREIKNVTKYAARLGQSFASSREAL-----HVDSN--------------IG 421
IR+ MG F KNV K+AAR+GQ F+S+ + VD + IG
Sbjct: 556 EAIRKWMGRFTS-KNVAKHAARMGQCFSSTYATVTMRPDEVDESFDDVVHNEYIFSDGIG 614
Query: 422 KISAELAETVAKKCGYAIYTPSAFQIRYGGYK--------------VTLRNNMFKYKSES 467
KI+ +LA VA++ PSA+QIR+ G+K + LR +M K++S
Sbjct: 615 KITPDLALEVAERLQLTDNPPSAYQIRFAGFKGVIAVWQGHGDGTRLFLRPSMRKFESNH 674
Query: 468 TSLDILANSKYQREGVARLRL---------DNVFERKQREVVARLDAILTDSSKVQEALE 518
L++++ +K+Q + R + D++F + Q +++ L+ IL+D E L
Sbjct: 675 LVLEVVSWTKFQPGFLNRQIIILLSSLNVPDSIFWQMQETMLSNLNNILSDRDVAFEVLT 734
Query: 519 LMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCL 578
S A++ N +L+ G++P EP L M ++ L +L +ARIF+ G+ +MGCL
Sbjct: 735 -TSCADDGNTAALMLSAGFEPRTEPHLKAMLLAIRSAQLQDLLEKARIFVPKGRWLMGCL 793
Query: 579 DEKGTLEYGQ--------------------------------GLMVVAKKPCLHPGDMRV 606
DE G LE GQ G +V+AK PCLHPGD+R+
Sbjct: 794 DELGVLEQGQCFIRATVPSLNSYFVKHGSRFSSTDKNTEVILGTVVIAKNPCLHPGDVRI 853
Query: 607 LRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ--FQPTA 664
L AVDVP LHH+VDC++FP KGERPH NE SGSD DG++YFV WD IPP + + P
Sbjct: 854 LEAVDVPELHHLVDCLVFPQKGERPHANEASGSDLDGDLYFVTWDEKLIPPGKKSWNPMD 913
Query: 665 YTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKL 724
Y+P K L R V+ D+ ++F +++++LG ICNAHVV+A AM +C L +L
Sbjct: 914 YSPPEAKQLPRQVSQHDIIDFFLKNMISENLGRICNAHVVHADLSEYGAMDEKCIHLAEL 973
Query: 725 SSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTI 784
++ DF KTG A +P L+ K+YPDFM K+D Y+S+ I+G LYR + +
Sbjct: 974 AATAVDFPKTGKLAIMPPHLKPKVYPDFMGKEDGQSYKSEKILGRLYRSIQEASNGDVVS 1033
Query: 785 KSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRC 844
+ + YD D+EV G + ++ + YD +L L+ Y ++TEAE+++
Sbjct: 1034 QEVCTPNDLP-YDIDLEVPGASDFLAS--AWQCKCSYDAQLSALLSQYRVRTEAELVTGH 1090
Query: 845 IMEMAKSFDKKR-DL-EAISFSVRSLRKEARAWFNKKKND 882
I + K+ KK+ D+ + + + +LRKE ++ F +D
Sbjct: 1091 ITFLVKNSSKKQGDIKDRLKTAYSALRKEFKSTFESIASD 1130
>gi|242093792|ref|XP_002437386.1| hypothetical protein SORBIDRAFT_10g025950 [Sorghum bicolor]
gi|241915609|gb|EER88753.1| hypothetical protein SORBIDRAFT_10g025950 [Sorghum bicolor]
Length = 1239
Score = 391 bits (1004), Expect = e-105, Method: Compositional matrix adjust.
Identities = 250/704 (35%), Positives = 366/704 (51%), Gaps = 109/704 (15%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQI--- 324
V ++++TP++ Y P++ SNRV R Y D FLR++FVDE + L + LS Q+
Sbjct: 472 VRRLIITPTRTYCMPPQLERSNRVTRHYHQLSDRFLRVAFVDEGMLPLNANALSLQVVPL 531
Query: 325 ----SSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTA 380
S+ ++ T +Y RV + L G + +K+ LAFS SQ ++ + W FA T
Sbjct: 532 VKDLMSSPTQQMTTVYRRVQTILTEGFTMCGRKYSFLAFSTSQLKQKSAWFFAEDGTTTV 591
Query: 381 ADIRERMGDFREIKNVTKYAARLGQSFASS---------------REALHVDSN----IG 421
A ++E MG F I+N K+AAR+G F SS + +H N IG
Sbjct: 592 ASMKEWMGQF-PIRNPAKHAARMGLCFTSSYATVTMQPCEVDEYLEDVIHNGYNFSDGIG 650
Query: 422 KISAELAETVAKKCGYA-IYTPSAFQIRYGGYK--------------VTLRNNMFKYKSE 466
I+ +LA VAK+ IY PS +QIRY G+K ++LR +M K++S
Sbjct: 651 MITQDLALEVAKRLQLTDIYAPSTYQIRYAGFKGVVAVSTGQNDGMRMSLRPSMRKFESA 710
Query: 467 STSLDILANSKYQREGVARLRL---------DNVFERKQREVVARLDAILTDSSKVQEAL 517
+ L++L+ +K+Q + R + D VF + Q ++ L IL+D++ E +
Sbjct: 711 HSVLEVLSWTKFQPSFLNRQIITLLTSLGVPDAVFWQMQEAMLGNLKRILSDNNVAYEVV 770
Query: 518 ELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGC 577
S E+ + +L+ G+ P EP L M AS + L + RIF+ G+ +MGC
Sbjct: 771 T-NSCPEHGSTAGLMLSAGFAPATEPHLRAMLLAICASQMQGLLDKTRIFVPKGRWLMGC 829
Query: 578 LDEKGTLEYGQ---------------------------------GLMVVAKKPCLHPGDM 604
LDE G LE GQ G +V+AK PCLHPGD+
Sbjct: 830 LDELGILEQGQCFIQVSTPSLNNCYVNRGSIFPSEYKNNAEIIVGTVVMAKNPCLHPGDV 889
Query: 605 RVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPP--LQFQP 662
R+L AVDVP LHH+VDC++FP KGERPH NE SGSD DG+IYFV WD + +PP P
Sbjct: 890 RILEAVDVPELHHLVDCLVFPQKGERPHANEASGSDLDGDIYFVTWDENLVPPGRQSGTP 949
Query: 663 TAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLV 722
Y PA K L R+V D+ +++ + +VND+LG ICNAHVV+A D AM +C L
Sbjct: 950 MDYFPAKTKQLPREVHQSDIIDFYLESMVNDNLGRICNAHVVHADRSDDGAMDPKCIQLA 1009
Query: 723 KLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREV---NGIAP 779
KL++I D +KTG +P L K YPDFM K D Y+S+ I+G LYR + NG
Sbjct: 1010 KLAAIAVDSAKTGEIVRMPPSLSPKEYPDFMGKGDAISYKSKKILGRLYRSILRENG--- 1066
Query: 780 STTTIKSFAKEGAM----QFYDTDMEVNGFKEVAMQF--DGFKYRTEYDNKLGNLMDYYG 833
F +G YD D+EV G A+ F D ++ + Y+ +L L+ YG
Sbjct: 1067 -----DDFVSQGTCISNETPYDIDLEVPG----ALSFLEDAWQCKCLYEAQLNTLLSQYG 1117
Query: 834 IKTEAEMLSRCIMEMAKSFDKKRDL-EAISFSVRSLRKEARAWF 876
+++EAE+++ I + + L E I+++ L +E R+ F
Sbjct: 1118 LRSEAELVTGEIWPLVGYNKYQYQLKERINYAYSKLHQEFRSIF 1161
>gi|15229153|ref|NP_190519.1| RNA-dependent RNA polymerase 6 [Arabidopsis thaliana]
gi|75337188|sp|Q9SG02.1|RDR6_ARATH RecName: Full=RNA-dependent RNA polymerase 6; Short=AtRDRP6; AltName:
Full=Protein SILENCING DEFECTIVE 1; AltName: Full=Protein
SUPPRESSOR OF GENE SILENCING 2; AltName:
Full=RNA-directed RNA polymerase 6
gi|12324444|gb|AAG52184.1|AC012329_11 putative RNA-directed RNA polymerase; 73997-69985 [Arabidopsis
thaliana]
gi|6899955|emb|CAB71285.1| RNA-directed RNA polymerase-like protein [Arabidopsis thaliana]
gi|8164028|gb|AAF73959.1| SGS2 [Arabidopsis thaliana]
gi|332645029|gb|AEE78550.1| RNA-dependent RNA polymerase 6 [Arabidopsis thaliana]
Length = 1196
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 244/705 (34%), Positives = 377/705 (53%), Gaps = 91/705 (12%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLS------ 321
+ ++++TP++ Y PE+ LSNRV+R Y + FLR++F+DE + + S VLS
Sbjct: 411 IRRLVITPTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPI 470
Query: 322 -PQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTA 380
++S++ ++T +++RV S L +G + +K+ LAFS +Q R+ + W FA +
Sbjct: 471 VKDLTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRV 530
Query: 381 ADIRERMGDFREIKNVTKYAARLGQSFASSREALHV-------------------DSNIG 421
+DI+ MG F++ KNV K AAR+G F+S+ + V IG
Sbjct: 531 SDIKTWMGKFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERNGYVFSDGIG 589
Query: 422 KISAELAETVAKKCGYAI-YTPSAFQIRYGGYK--------------VTLRNNMFKYKSE 466
I+ +LA+ V +K + Y+P A+QIRY G+K + LR++M K+ S+
Sbjct: 590 TITPDLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFSK 649
Query: 467 STSLDILANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEAL 517
T L+I + +++Q R+ + L + D +F Q ++ +L+ IL D+ E L
Sbjct: 650 HTILEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVL 709
Query: 518 ELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGC 577
S AE N +L+ G+KP EP L M + + L LR ++RIF+ +G+ +MGC
Sbjct: 710 T-ASCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGC 768
Query: 578 LDEKGTLEYGQ--------------------------------GLMVVAKKPCLHPGDMR 605
LDE G LE+GQ G + +AK PCLHPGD+R
Sbjct: 769 LDEAGILEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVR 828
Query: 606 VLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ--FQPT 663
+L AVDVP LHHM DC++FP KG+RPHTNE SGSD DG++YFV WD IPP + +
Sbjct: 829 ILEAVDVPQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAM 888
Query: 664 AYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVK 723
Y A EK L R V +D+ ++FA + N+ LG ICNAHVV+A AM C L +
Sbjct: 889 HYDAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAE 948
Query: 724 LSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTT 783
L++ DF KTG ++P L+ K+YPDFM K+D Y+S I+G LYR V +
Sbjct: 949 LAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDAE 1008
Query: 784 IKS-FAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLS 842
S + + + YD +E+ GF+++ + + ++ YD +L L+ Y ++ E E+++
Sbjct: 1009 ASSEESTDPSAIPYDAVLEIPGFEDLIPE--AWGHKCLYDGQLIGLLGQYKVQKEEEIVT 1066
Query: 843 RCIMEMAKSFDKKRD--LEAISFSVRSLRKEARAWFNKKKNDSDS 885
I M K KK+ E + S SL+KE R F + D ++
Sbjct: 1067 GHIWSMPKYTSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHEN 1111
>gi|242080895|ref|XP_002445216.1| hypothetical protein SORBIDRAFT_07g006150 [Sorghum bicolor]
gi|241941566|gb|EES14711.1| hypothetical protein SORBIDRAFT_07g006150 [Sorghum bicolor]
Length = 1220
Score = 387 bits (993), Expect = e-104, Method: Compositional matrix adjust.
Identities = 243/703 (34%), Positives = 365/703 (51%), Gaps = 92/703 (13%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLS----PQ 323
V ++++TP++ Y P++ SNRV+R Y D FLR++F+DE + L + LS P
Sbjct: 454 VRRLVITPTRAYCMPPQVERSNRVIRHYHHVADRFLRVTFMDEGMQLLNNNALSFHAAPI 513
Query: 324 ISSTNG---ERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTA 380
+ S + +TRIY RV + + G + +K+ LAFS++Q ++ + W FA TA
Sbjct: 514 VQSMMSKLFQHKTRIYRRVHTLMTKGFHLCGRKYSFLAFSSNQMKDRSAWFFAEEGTTTA 573
Query: 381 ADIRERMGDFREIKNVTKYAARLGQSFASS-------------------REALHVDSNIG 421
A IRE MG F +NV K+AAR+G F SS R + IG
Sbjct: 574 ATIREWMGQFPS-RNVAKHAARMGLCFTSSYATVVTRPNEVNELLEDIERNGYNFSDGIG 632
Query: 422 KISAELAETVAKKCGYA-IYTPSAFQIRYGGYK--------------VTLRNNMFKYKSE 466
KI+ +LA VA + Y PSA+QIRY G+K ++LR +M K++S
Sbjct: 633 KITPDLAIEVAARLPLIDRYPPSAYQIRYAGFKGVIAVWPGQNDGIRLSLRPSMRKFEST 692
Query: 467 STSLDILANSKYQREGVARLRL---------DNVFERKQREVVARLDAILTDSSKVQEAL 517
+ +++++ +K+Q + R + + +F Q ++ LD IL+D ++ +
Sbjct: 693 HSVIEVVSWTKFQPAFLNRQIIILLMSLGVPEAIFWEMQEAMLKNLDRILSDR-EIAYKV 751
Query: 518 ELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGC 577
S E + + +L+ G+ P EP L M +S L L + +IF+ G+ +MGC
Sbjct: 752 VTNSCPERGTIARLMLSAGFSPATEPHLKAMLLAIKSSQLKGLLKKTKIFVPKGRWLMGC 811
Query: 578 LDEKGTLEYGQ--------------------------------GLMVVAKKPCLHPGDMR 605
LDE G LE GQ G +VVAK PCLHPGD+R
Sbjct: 812 LDELGILEQGQCFIQASSLSINNHFMKHGSRFSSANKNAVTIVGTVVVAKNPCLHPGDVR 871
Query: 606 VLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ--FQPT 663
VL AVDVP LHH+VDC++FP KGERPH NE SGSD DG++YFV WD + +PP + ++
Sbjct: 872 VLEAVDVPELHHLVDCLVFPKKGERPHPNEASGSDLDGDVYFVTWDKNLVPPGKRSWKAM 931
Query: 664 AYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVK 723
Y+PA K L R V D+ ++F + ++++G I NAHVV+A AM +C L +
Sbjct: 932 DYSPAEAKQLQRRVLQHDLIDFFLKNMASENIGRISNAHVVHADISEYGAMDEKCIQLAE 991
Query: 724 LSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTT 783
L++ DF KTG +P LR YPDFMEK D Y+S+ I+G LYR V
Sbjct: 992 LAATAVDFPKTGKIVRMPPSLRPTKYPDFMEKDDAISYKSEKIIGKLYRTVRYYI-LGMP 1050
Query: 784 IKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSR 843
++S K+G M YD D+EV G + D ++++ Y+++L L++ Y TEAE+++
Sbjct: 1051 LESLIKDG-MPAYDIDLEVPGASHFFL--DAWQWKCAYESRLNALLNQYSGCTEAELVTG 1107
Query: 844 CIMEMAKSFDKKRDL--EAISFSVRSLRKEARAWFNKKKNDSD 884
I +A +K+ E S + L +E R F D D
Sbjct: 1108 VIWSLADGRKRKKHEANEKFSHAYPELHQEFRRVFENIAADQD 1150
>gi|8248473|gb|AAF74208.1|AF268093_1 RNA-dependent RNA polymerase [Arabidopsis thaliana]
Length = 1196
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 245/705 (34%), Positives = 374/705 (53%), Gaps = 91/705 (12%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLS------ 321
+ ++++TP++ Y PE+ LSNRV+R Y + FLR++F+DE + + S VLS
Sbjct: 411 IRRLVITPTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPI 470
Query: 322 -PQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTA 380
++S++ ++T +++RV S L +G + +K+ LAFS +Q R+ + W FA +
Sbjct: 471 VKDLTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRV 530
Query: 381 ADIRERMGDFREIKNVTKYAARLGQSFASSREALHV-------------------DSNIG 421
+DI+ MG F++ KNV K AAR+G F+S+ + V IG
Sbjct: 531 SDIKTWMGKFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERNGYVFSDGIG 589
Query: 422 KISAELAETVAKKCGYAI-YTPSAFQIRYGGYK--------------VTLRNNMFKYKSE 466
I+ +LA V +K + Y+P A+QIRY G+K + LR++M K S+
Sbjct: 590 TITPDLAGEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKIFSK 649
Query: 467 STSLDILANSKYQ-----REGVARLRLDNV----FERKQREVVARLDAILTDSSKVQEAL 517
T L+I + +++Q R+ + L + V F Q ++ +LD IL D+ E L
Sbjct: 650 HTILEICSWTRFQPGFLNRQIITLLSVLGVPVEIFWDMQESMLYKLDRILVDTDVAFEVL 709
Query: 518 ELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGC 577
S AE N +L+ G+KP EP L M + + L LR ++RIF+ +G+ +MGC
Sbjct: 710 T-ASCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGC 768
Query: 578 LDEKGTLEYGQ--------------------------------GLMVVAKKPCLHPGDMR 605
LDE G LE+GQ G + +AK PCLHPGD+R
Sbjct: 769 LDEAGILEHGQCFIQVSKPSIENCFSKHGSRFKETKKDLEVVKGYVAIAKNPCLHPGDVR 828
Query: 606 VLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ--FQPT 663
+L AVDVP LHHM DC++FP KG+RPHTNE SGSD DG++YFV WD IPP + +
Sbjct: 829 ILEAVDVPQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAM 888
Query: 664 AYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVK 723
Y A EK L R V +D+ ++FA + N+ LG ICNAHVV+A AM C L +
Sbjct: 889 HYDAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAE 948
Query: 724 LSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTT 783
L++ DF KTG ++P L+ K+YPDFM K+D Y+S I+G LYR V +
Sbjct: 949 LAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRPVKEVYDEDAE 1008
Query: 784 IKS-FAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLS 842
S + + + YD +E+ GF+++ + + ++ YD +L L+ Y ++ E E+++
Sbjct: 1009 ASSEESTDPSAIPYDAVLEIPGFEDLIPE--AWGHKCSYDGQLIGLLGQYKVQKEEEIVT 1066
Query: 843 RCIMEMAKSFDKKRD--LEAISFSVRSLRKEARAWFNKKKNDSDS 885
I M K KK+ E + S SL+KE R F + D ++
Sbjct: 1067 GHIWSMPKYTSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHEN 1111
>gi|106733035|gb|ABF82437.1| putative RNA-dependent RNA polymerase 6 [Physcomitrella patens subsp.
patens]
gi|106733051|gb|ABF82438.1| putative RNA-dependent RNA polymerase 6 [Physcomitrella patens subsp.
patens]
Length = 1152
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 252/719 (35%), Positives = 372/719 (51%), Gaps = 94/719 (13%)
Query: 260 ALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTV 319
AL G I + ++L TP++ P +S SNRV+R Y D FLR+SFVDEDL ++
Sbjct: 365 ALAFGSILMYRVLFTPTRGICTLPVVSRSNRVLRHYHTLSDRFLRVSFVDEDLHQISPGS 424
Query: 320 LSPQIS-------STNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMF 372
L+ +S ST RT I+ R+L + NG + +++ LAFS+SQ R + W F
Sbjct: 425 LTVPVSRSVRCLSSTYEYNRTEIHRRILDIVENGFKLCGRQYSFLAFSSSQMRGGSAWFF 484
Query: 373 ASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHV---------------- 416
AS + IR+ MG F +NV KYAAR+GQ F+ S L V
Sbjct: 485 ASTGNVNTHLIRQWMGKFPS-QNVAKYAARMGQCFSCSFPTLPVLKAMVRKLPDVVRNGY 543
Query: 417 --DSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK--------------VTLRNNM 460
G I+ + A V+ YTPS +QIRY GYK + LR++M
Sbjct: 544 IFSDGCGMIAPDFALRVSLSLKLD-YTPSVYQIRYAGYKGVVSTWPIPGRHSHLGLRDSM 602
Query: 461 FKYKSESTSLDILANSKY-----QREGV---ARLRLDN-VFERKQREVVARLDAILTDSS 511
K++S T L+++ SKY R+ + + L+++N VF+ Q VARL A+L D +
Sbjct: 603 KKFESGHTELEVVNWSKYLPCYLNRQIICLLSTLKVENAVFKSLQDAQVARLKAMLGDPN 662
Query: 512 KVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNG 571
+ E + S +++ + +L G+ P EP L + + S L +L ++ARIF+ NG
Sbjct: 663 QAYEIVT-TSCSDSHSTAATMLRGGFLPLKEPHLYELLVSIKFSLLEDLVSKARIFVPNG 721
Query: 572 QAMMGCLDEKGTLEYGQ-------------------------------GLMVVAKKPCLH 600
+ ++GC+DE G L YGQ G +++ K PCLH
Sbjct: 722 RWVIGCMDETGLLNYGQCFIHVSGPVSKACLGGDGNNLGHSGLLQVITGKVIMVKNPCLH 781
Query: 601 PGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPL-- 658
PGD+R+L AVD+P LH MVDC++ P G RPH NE SGSD DG++YF CWD + IPP
Sbjct: 782 PGDIRILEAVDLPELHSMVDCLVLPQNGPRPHPNEVSGSDLDGDVYFTCWDPNLIPPSGE 841
Query: 659 QFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRC 718
++P Y KIL R I+DV+ +F + ++ND LG I NAHV A P+ A+ + C
Sbjct: 842 SWEPMEYAAHDSKILYRPANIKDVKNFFVNSMMNDKLGFISNAHVARADKSPEGALDSDC 901
Query: 719 PDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIA 778
L L+SI DF KTG AT+P LRV +PDFMEK+ Y+S ++G LYR V
Sbjct: 902 LRLAHLASIAVDFPKTGKNATMPHDLRVNEWPDFMEKEGAVTYQSNKVIGELYRSVTKFL 961
Query: 779 PSTTTIKSFAKEGA--MQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKT 836
+ A YD D++V G+ EV + D + + YD +L +M ++ ++
Sbjct: 962 KAEVEQHQHADNAVDLDSIYDYDLQVPGY-EVYLD-DAWTKKISYDRQLRCMMTHFNVQR 1019
Query: 837 EAEMLSRCIMEMA---KSFDKKRDLEAISFSVRSLRKEARAWFN--KKKNDSDSSHKDV 890
EA +++ + + +S ++ R +A + S L +E RA F KK D D +D+
Sbjct: 1020 EAALIASWLKRGSPGLRSVNRNRG-DAFAQSYGVLYEEFRAQFEGLKKGLDPDGYSEDM 1077
>gi|168067479|ref|XP_001785643.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
gi|162662723|gb|EDQ49541.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
Length = 1049
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 252/719 (35%), Positives = 372/719 (51%), Gaps = 94/719 (13%)
Query: 260 ALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTV 319
AL G I + ++L TP++ P +S SNRV+R Y D FLR+SFVDEDL ++
Sbjct: 272 ALAFGSILMYRVLFTPTRGICTLPVVSRSNRVLRHYHTLSDRFLRVSFVDEDLHQISPGS 331
Query: 320 LSPQIS-------STNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMF 372
L+ +S ST RT I+ R+L + NG + +++ LAFS+SQ R + W F
Sbjct: 332 LTVPVSRSVRCLSSTYEYNRTEIHRRILDIVENGFKLCGRQYSFLAFSSSQMRGGSAWFF 391
Query: 373 ASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHV---------------- 416
AS + IR+ MG F +NV KYAAR+GQ F+ S L V
Sbjct: 392 ASTGNVNTHLIRQWMGKFPS-QNVAKYAARMGQCFSCSFPTLPVLKAMVRKLPDVVRNGY 450
Query: 417 --DSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK--------------VTLRNNM 460
G I+ + A V+ YTPS +QIRY GYK + LR++M
Sbjct: 451 IFSDGCGMIAPDFALRVSLSLKLD-YTPSVYQIRYAGYKGVVSTWPIPGRHSHLGLRDSM 509
Query: 461 FKYKSESTSLDILANSKY-----QREGV---ARLRLDN-VFERKQREVVARLDAILTDSS 511
K++S T L+++ SKY R+ + + L+++N VF+ Q VARL A+L D +
Sbjct: 510 KKFESGHTELEVVNWSKYLPCYLNRQIICLLSTLKVENAVFKSLQDAQVARLKAMLGDPN 569
Query: 512 KVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNG 571
+ E + S +++ + +L G+ P EP L + + S L +L ++ARIF+ NG
Sbjct: 570 QAYEIVT-TSCSDSHSTAATMLRGGFLPLKEPHLYELLVSIKFSLLEDLVSKARIFVPNG 628
Query: 572 QAMMGCLDEKGTLEYGQ-------------------------------GLMVVAKKPCLH 600
+ ++GC+DE G L YGQ G +++ K PCLH
Sbjct: 629 RWVIGCMDETGLLNYGQCFIHVSGPVSKACLGGDGNNLGHSGLLQVITGKVIMVKNPCLH 688
Query: 601 PGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPL-- 658
PGD+R+L AVD+P LH MVDC++ P G RPH NE SGSD DG++YF CWD + IPP
Sbjct: 689 PGDIRILEAVDLPELHSMVDCLVLPQNGPRPHPNEVSGSDLDGDVYFTCWDPNLIPPSGE 748
Query: 659 QFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRC 718
++P Y KIL R I+DV+ +F + ++ND LG I NAHV A P+ A+ + C
Sbjct: 749 SWEPMEYAAHDSKILYRPANIKDVKNFFVNSMMNDKLGFISNAHVARADKSPEGALDSDC 808
Query: 719 PDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIA 778
L L+SI DF KTG AT+P LRV +PDFMEK+ Y+S ++G LYR V
Sbjct: 809 LRLAHLASIAVDFPKTGKNATMPHDLRVNEWPDFMEKEGAVTYQSNKVIGELYRSVTKFL 868
Query: 779 PSTTTIKSFAKEGA--MQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKT 836
+ A YD D++V G+ EV + D + + YD +L +M ++ ++
Sbjct: 869 KAEVEQHQHADNAVDLDSIYDYDLQVPGY-EVYLD-DAWTKKISYDRQLRCMMTHFNVQR 926
Query: 837 EAEMLSRCIMEMA---KSFDKKRDLEAISFSVRSLRKEARAWFN--KKKNDSDSSHKDV 890
EA +++ + + +S ++ R +A + S L +E RA F KK D D +D+
Sbjct: 927 EAALIASWLKRGSPGLRSVNRNRG-DAFAQSYGVLYEEFRAQFEGLKKGLDPDGYSEDM 984
>gi|242093794|ref|XP_002437387.1| hypothetical protein SORBIDRAFT_10g025970 [Sorghum bicolor]
gi|241915610|gb|EER88754.1| hypothetical protein SORBIDRAFT_10g025970 [Sorghum bicolor]
Length = 1251
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 258/754 (34%), Positives = 391/754 (51%), Gaps = 111/754 (14%)
Query: 222 ALEMLF--HLRECCYDPVSWLRE-QYRKHVSSGQFPTSPAVAL-DGGLIYVNKILVTPSK 277
AL LF L + C DP S L+ Q R + S + D + V ++++TP++
Sbjct: 441 ALTELFGTKLHQVCNDPCSRLKNAQVRAAKNLNLLSNSSSRKFGDYNVFEVRRLIITPTR 500
Query: 278 VYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQI-------SSTNGE 330
Y P++ SNRV R Y D FLR++FVDE + L S LS + S++ +
Sbjct: 501 AYCMPPQVERSNRVTRHYRQVSDRFLRVTFVDEGMLPLNSHALSLHVVPFVKDSMSSSSQ 560
Query: 331 RRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDF 390
+ T +Y RV + L G + +K+ LAFS SQ ++ + W FA T A ++E MG F
Sbjct: 561 QMTTVYRRVQTILTEGFTMCGRKYSFLAFSTSQLKQKSAWFFAEDGTTTVASMKEWMGQF 620
Query: 391 REIKNVTKYAARLGQSFASS---------------REALHVDSN----IGKISAELAETV 431
I+N K+AAR+G F SS + +H N IG I+ +LA V
Sbjct: 621 -PIRNPAKHAARMGLCFTSSYATVTMQPCEVNEYLEDVIHNGYNFSDGIGIITQDLALEV 679
Query: 432 AKKCGYA-IYTPSAFQIRYGGYK---------------VTLRNNMFKYKSESTSLDILAN 475
AK+ IY PSA+QIRY G+K ++LR +M K++S +++++
Sbjct: 680 AKRLPLTDIYAPSAYQIRYAGFKGVVAVSPRHNDGMRMMSLRPSMRKFESVHPVIEVVSW 739
Query: 476 SKYQREGVARLRL---------DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENT 526
+K+Q + R + D+VF + Q ++ L IL+++ V + S E+
Sbjct: 740 TKFQPAFLNRQIITLLTSLGVPDDVFWQMQEAMLGNLKRILSNTD-VAYKIVTSSCPEHG 798
Query: 527 NVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEY 586
+ +L G+ P EP L M AS + L + IF+ G+ +MGCLDE G LE
Sbjct: 799 STAGLMLTAGFAPATEPHLRAMLLAICASQMKGLLDKTWIFVPKGRWLMGCLDELGILEQ 858
Query: 587 GQ---------------------------------GLMVVAKKPCLHPGDMRVLRAVDVP 613
GQ G +V+AK PCLHPGD+R+L AVDVP
Sbjct: 859 GQCFIRVSTPSLNNHYMNRGSISPSEYKNNAEIIVGTVVMAKNPCLHPGDVRILEAVDVP 918
Query: 614 ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ--FQPTAYTPAPEK 671
LHH+VDC++FP KGERPH+NE SGSD DG++YFV WD + +PP + P Y+P+ K
Sbjct: 919 ELHHLVDCLVFPKKGERPHSNEASGSDLDGDVYFVTWDENLVPPGRKSCTPMDYSPSKSK 978
Query: 672 ILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDF 731
L R+V +D +++ + +VND+LG ICNAHV +A D AM +C +L +L++I D
Sbjct: 979 QLPREVHQQDTIDFYLESMVNDNLGRICNAHVAHADRSDDGAMDTKCVELAELAAIAVDS 1038
Query: 732 SKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREV----NGIAPSTTTIKSF 787
+KTG +P L K YPDFM K+D Y+S+ I+G LYR + +G S T S
Sbjct: 1039 AKTGEIVKMPPSLSPKEYPDFMGKEDAISYKSKKILGRLYRSILMENSGDLLSQVTCISN 1098
Query: 788 AKEGAMQFYDTDMEVNGFKEVAMQF--DGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCI 845
+ YDTD+EV G A+ F D +K + Y+ +L L++ +G+ +EAE+++ I
Sbjct: 1099 ENQ-----YDTDLEVPG----ALSFLEDAWKCKCLYEAQLNTLLNQFGVHSEAELVTGEI 1149
Query: 846 MEMAKSFDKKRDL---EAISFSVRSLRKEARAWF 876
+ ++KK E ++++ L +E R+ F
Sbjct: 1150 WSLV-GYNKKYQYQLKERLNYAYSKLHQEFRSIF 1182
>gi|413954935|gb|AFW87584.1| hypothetical protein ZEAMMB73_985632 [Zea mays]
Length = 1241
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 240/710 (33%), Positives = 362/710 (50%), Gaps = 97/710 (13%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLS----PQ 323
V +++VTP++ Y P++ SNRV+R Y + D FLR++F DE + L L+ P
Sbjct: 481 VRRLIVTPTREYCIPPQVERSNRVIRHYHELSDRFLRVTFTDEGMLPLNPNALTLRAVPS 540
Query: 324 ISSTNGERR-TRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAAD 382
S+ + R+ T +Y RV + L G+++ +++ LAFS SQ ++ + W FA T A
Sbjct: 541 TSTPSTSRQMTSVYRRVQTALTEGLIMCGRRYSFLAFSASQLKQKSAWFFAEDGATTVAG 600
Query: 383 IRERMGDFREIKNVTKYAARLGQSFASS-------------------REALHVDSNIGKI 423
I+E MG F I+N K+AAR+G F SS R + IG I
Sbjct: 601 IKEWMGQF-PIRNPAKHAARMGLCFTSSYATVTMQPGEVDEDLEDVTRNGYNFSDGIGVI 659
Query: 424 SAELAETVAKKCGYA-IYTPSAFQIRYGGYK-------------------VTLRNNMFKY 463
+ +LA VA+ A + PSA+QIRY G+K ++LR +M K+
Sbjct: 660 TEDLALEVAEMLPLADRFAPSAYQIRYAGFKGVVAVWPPGPGQEDRGTRRMSLRPSMRKF 719
Query: 464 KSESTSLDILANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQ 514
+S T L++++ +K+Q R+ + L D+ F + Q ++ +L +L+DS
Sbjct: 720 ESTHTVLEVVSWTKFQPAFLNRQIITLLTTLGVPDDAFWQLQEAMLGKLRRVLSDSDVAY 779
Query: 515 EALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAM 574
E + + S E + +L G+ P EP L M S + L + IF+ G+ +
Sbjct: 780 EVV-INSCPEQGSTAGLMLGAGFAPATEPHLRAMLLAICTSQMQGLLNKTWIFVPKGRWL 838
Query: 575 MGCLDEKGTLEYGQ-----------------------------------GLMVVAKKPCL 599
MGCLDE G LE GQ G +V+AK PCL
Sbjct: 839 MGCLDEFGILEQGQCFLRVSTPSVGSRCVNRSPIFPSEYKGDADAQVITGTVVMAKNPCL 898
Query: 600 HPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ 659
HPGD+R+L AVDVP L+H+VDC +FP KGERPH +E SGSD DG++YFV WD +PP +
Sbjct: 899 HPGDVRILEAVDVPDLYHLVDCFVFPKKGERPHADEASGSDLDGDVYFVTWDESLVPPGR 958
Query: 660 --FQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNR 717
P Y+PA K L RDV +D +++ + +V D+LG ICNAH +A D AM +
Sbjct: 959 KSCTPMDYSPAKTKQLPRDVHQQDTIDFYLESMVYDNLGRICNAHAAHADRSDDGAMDPK 1018
Query: 718 CPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGI 777
C +L +L+SI D +KTG +P L K YPDFM K+D Y S+ I+G LYR V G
Sbjct: 1019 CIELARLASIAVDSAKTGEIVRMPPALSPKEYPDFMGKEDAISYRSEKILGRLYRSVLGE 1078
Query: 778 APSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTE 837
+ ++ YD D+EV G + D ++ R Y+ +L L+D Y + +E
Sbjct: 1079 NDGDFLSRDACISDEIR-YDADLEVLGASDFLQ--DAWRCRCLYEARLNALLDQYDVCSE 1135
Query: 838 AEMLSRCIMEMAKSFDKKRDL--EAISFSVRSLRKEARAWFNKKKNDSDS 885
AE+++ I +A K E I+++ +L +E R+ F +D+
Sbjct: 1136 AELVTGEIWSLAGCSKKYHHQLKERINYAYSNLHQEFRSIFESIDASTDN 1185
>gi|260803900|ref|XP_002596827.1| hypothetical protein BRAFLDRAFT_99723 [Branchiostoma floridae]
gi|229282087|gb|EEN52839.1| hypothetical protein BRAFLDRAFT_99723 [Branchiostoma floridae]
Length = 1922
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 243/700 (34%), Positives = 357/700 (51%), Gaps = 98/700 (14%)
Query: 266 IYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQIS 325
+Y K++VTP+++ F PE + NRVVR Y +DNF+R++F DED KL +
Sbjct: 406 VYARKVVVTPTQMLFLKPEPIVENRVVREY--GVDNFIRVAFRDEDFNKL---------T 454
Query: 326 STNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRE 385
+ N + RV L+ GI IG + FE L SNSQ RE+ WM+A+ E T +DIR
Sbjct: 455 APNPNSIKCVTTRVKDVLQRGIRIGGRHFEYLGSSNSQMREHGCWMYAAEDETTTSDIRA 514
Query: 386 RMGDFREIKNVTKYAARLGQSFASSREALHVD----------------------SNIGKI 423
MGD + V Y +RLGQ F+SSR+A++V IGKI
Sbjct: 515 WMGDLSHERCVATYVSRLGQFFSSSRDAVNVSVEDRSVALIDDVTSSQRRYTFSDGIGKI 574
Query: 424 SAELAETVAKKCGYAIYTPSAFQIRYGGYK--------------VTLRNNMFKYKSESTS 469
S LAE VA G + PSAFQIRYGG K + +R +M K++SE +
Sbjct: 575 SVPLAEKVAAALGVSP-VPSAFQIRYGGCKGVLAQDPSLGHTDLIHIRGSMKKFESEHKT 633
Query: 470 LDILANS-----KYQREGVARLR----LDNVFERKQREVVARL-DAILTDSSKVQEALEL 519
L++ + + R+ + L D F + Q V+ +L + +L D + A++
Sbjct: 634 LEVTSVTTPGSLSLNRQAITLLSGLGVPDEEFFKLQERVLNQLAEMLLLDGA----AVKA 689
Query: 520 MSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLEL--RTRARIFIQNGQAMMGC 577
+S A + L N EPF M + + + EL RTR ++ G+ MMG
Sbjct: 690 LSGARVGINFQALHNSRISLTTEPFFRSMLLAVYRNQMGELLRRTRIQLPAGEGRIMMGT 749
Query: 578 LDEKGTLEYGQ--------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHH 617
+DE G L+YGQ G + V K PC HPGDMR AVDVP L H
Sbjct: 750 MDETGKLQYGQVFLQYSRETDRPQAEKIVHQGQVTVTKNPCFHPGDMRKFTAVDVPELRH 809
Query: 618 MVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTA-YTPAPEKILARD 676
MVDC++FP++G RPH +E SGSD DG++YFV W I P + P +T P+K+L R
Sbjct: 810 MVDCIVFPSRGPRPHPDEMSGSDLDGDMYFVTWREGLILPRENIPAMDFTAQPKKVLRRP 869
Query: 677 VTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGV 736
V + D+ E+FA+YI ND LG+I NAH+V+A E S RC +L KL S DF KTG
Sbjct: 870 VQVSDMIEFFAEYIRNDQLGLIANAHLVHADKETKGIFSERCMELAKLHSDAVDFPKTGQ 929
Query: 737 AATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQ-- 794
+ LR YPDFM K DK Y S+ I+G L+R+ + + F+ + ++
Sbjct: 930 CPELKGDLRPDKYPDFMMKSDKPQYRSEKIIGKLFRQCQAL----DNAQRFSPDPVVEDD 985
Query: 795 FYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDK 854
D D+ GF+ + D Y+ K+ ++M YGI +E E++S CI+++ +
Sbjct: 986 GVDQDLIREGFE--SYTDDAQTQLNIYNTKIRSIMSLYGISSEGEVVSGCILKVKQRLGL 1043
Query: 855 KRD-----LEAISFSVRSLRKEARAWFNKKKNDSDSSHKD 889
++ E + ++L ++ RA F ++ ++ + S D
Sbjct: 1044 LKNERFEVTEYVRARFKTLWRKTRAEFFRQFDEKEESSTD 1083
>gi|413955011|gb|AFW87660.1| hypothetical protein ZEAMMB73_096378 [Zea mays]
Length = 1901
Score = 369 bits (946), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 240/714 (33%), Positives = 359/714 (50%), Gaps = 105/714 (14%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLS----PQ 323
V +++VTP++ Y P++ SNRV+R Y + D FLR++F DE + L L+ P
Sbjct: 1141 VRRLIVTPTREYCMPPQVERSNRVIRHYHELSDRFLRVTFTDEGMLPLNPNALTLRAVPS 1200
Query: 324 ISSTNGERR-TRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAAD 382
S+ + R+ T +Y RV + L G+++ +++ LAFS SQ ++ + W FA T A
Sbjct: 1201 TSTPSTSRQMTSVYRRVQTALTEGLIMCGRRYSFLAFSASQLKQKSAWFFAEDGATTVAG 1260
Query: 383 IRERMGDFREIKNVTKYAARLGQSFASS-------------------REALHVDSNIGKI 423
I+E MG F I+N K+AAR+G F SS R + IG I
Sbjct: 1261 IKEWMGQF-PIRNPAKHAARMGLCFTSSYATVTMQPGEVDEDLEDVTRNGYNFSDGIGVI 1319
Query: 424 SAELAETVAKKCGYA-IYTPSAFQIRYGGYK-------------------VTLRNNMFKY 463
+ +LA VA+ A + PSA+QIRY G+K ++LR +M K+
Sbjct: 1320 TEDLALEVAEMLPLADRFAPSAYQIRYAGFKGVVAVSPPGPGQEDRGTRRMSLRPSMRKF 1379
Query: 464 KSESTSLDILANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQ 514
+S L++++ +K+Q R+ + L D+ F + Q ++ +L +L+DS
Sbjct: 1380 ESTHNVLEVVSWTKFQPAFLNRQIITLLTTLGVPDDSFWQLQEAMLGKLRRVLSDSDVAY 1439
Query: 515 EALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAM 574
E + S E + +L G+ P EP L M S + L + IF+ G+ +
Sbjct: 1440 EVVT-NSCPEQGSTAGLMLGAGFAPATEPHLRAMLLAICTSQMQGLLNKTWIFVPKGRWL 1498
Query: 575 MGCLDEKGTLEYGQ-----------------------------------GLMVVAKKPCL 599
MGCLDE G LE GQ G +V+AK PCL
Sbjct: 1499 MGCLDEFGILEQGQCFLRVSTPSLGSRCVNRSPIFPSEYKGDANAQVITGTVVMAKNPCL 1558
Query: 600 HPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ 659
HPGD+R+L AVDVP L+H+VDC +FP KGERPH +E SGSD DG++YFV WD +PP +
Sbjct: 1559 HPGDVRILEAVDVPDLYHLVDCFVFPKKGERPHADEASGSDLDGDVYFVTWDESLVPPGR 1618
Query: 660 --FQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNR 717
P Y+PA K L DV +D +++ + +V D+LG ICNAH +A D AM +
Sbjct: 1619 KSCTPMDYSPAKTKQLPHDVHQQDTIDFYLESMVYDNLGRICNAHAAHADRSDDGAMDPK 1678
Query: 718 CPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGI 777
C +L +L+SI D +KTG +P L K YPDFM K+D Y S+ I+G LYR V G
Sbjct: 1679 CIELARLASIAVDSAKTGEIVRMPPALSPKEYPDFMGKEDAISYRSEKILGRLYRSVLG- 1737
Query: 778 APSTTTIKSFAKEGAMQF----YDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYG 833
F GA YD D+EV G + D ++ R Y+ +L L+D Y
Sbjct: 1738 ----ENDGDFLSRGACISDEIRYDADLEVPGASDFLQ--DAWRCRCLYEARLNALLDQYN 1791
Query: 834 IKTEAEMLSRCIMEMAKSFDKKRDL--EAISFSVRSLRKEARAWFNKKKNDSDS 885
+++EAE+++ I +A K + E I+++ + +E R F +D+
Sbjct: 1792 VRSEAELVTGEIWSLAGCSKKYQHQLKERINYAYSKVHQEFRIIFESIGASTDN 1845
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 108/213 (50%), Gaps = 28/213 (13%)
Query: 280 FCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLS----PQISSTNGERR-TR 334
+C P + SNRV+R Y + D FLR++F DE + L L+ P S+ + R+ T
Sbjct: 462 YCMP-VERSNRVIRHYHELSDRFLRVTFTDEGMLPLNPNALTLRAVPSTSTPSTSRQMTS 520
Query: 335 IYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIK 394
+Y RV + L G+++ +++ LAFS SQ ++ + W FA T A I+E MG F I+
Sbjct: 521 VYRRVQTALTEGLIMCGRRYSFLAFSASQLKQKSAWFFAEDGATTVAGIKEWMGQF-PIR 579
Query: 395 NVTKYAARLGQSFASS-------------------REALHVDSNIGKISAELAETVAKKC 435
N K+AAR+G F SS R + IG I+ +LA VA+
Sbjct: 580 NPAKHAARMGLCFTSSYATVTMQPGEVDEDLEDVTRNGYNFSDGIGVITEDLALEVAEML 639
Query: 436 GYA-IYTPSAFQIRYGGYKVTLRNNMFKYKSES 467
A + PSA+QIR ++ T R M + ++ S
Sbjct: 640 PLADRFAPSAYQIRREVFEET-RVAMARSRTRS 671
>gi|449467491|ref|XP_004151456.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
Length = 401
Score = 365 bits (938), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 184/336 (54%), Positives = 231/336 (68%), Gaps = 23/336 (6%)
Query: 574 MMGCLDEKGTLEYGQ-------------------GLMVVAKKPCLHPGDMRVLRAVDVPA 614
MMGCLDE TLEYGQ G +VVAK PCLHPGD+RVL AVDV A
Sbjct: 1 MMGCLDETQTLEYGQVFVHCSIPGRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKA 60
Query: 615 LHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILA 674
LHHMVDCV+FP KG+RPH NECSGSD DG++YFVCWD + Q +P +Y PAP L
Sbjct: 61 LHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDTELTCIKQVKPMSYKPAPTIQLD 120
Query: 675 RDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKT 734
DVTIE+V+EYFA+Y+VND LG I NAH V+A KAMS C L KL SI DF KT
Sbjct: 121 HDVTIEEVQEYFANYMVNDGLGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKT 180
Query: 735 GVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQ 794
GV A +P LRV YPDFM+K +K Y S ++G L+R V ++ + + F +E A +
Sbjct: 181 GVPANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVSAFEIFTREVATK 240
Query: 795 FYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDK 854
YD DMEV+GF++ + F Y+T+YD KLGNLMDYYGIKTE E++S I++MAKSFDK
Sbjct: 241 CYDPDMEVDGFEKYLRE--AFDYKTKYDFKLGNLMDYYGIKTEPELVSGNILKMAKSFDK 298
Query: 855 KRDLEAISFSVRSLRKEARAWFNKKKNDSDSSHKDV 890
++DLE I+F+++SLRKE R WFN +N+S S++ D+
Sbjct: 299 RKDLEQIAFAMKSLRKEVRFWFN--ENESKSTYDDI 332
>gi|316989903|gb|ADU77017.1| RNA-dependent RNA polymerase 1c [Cucumis sativus]
Length = 400
Score = 352 bits (902), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 177/335 (52%), Positives = 227/335 (67%), Gaps = 23/335 (6%)
Query: 575 MGCLDEKGTLEYGQGLMVVA-------------------KKPCLHPGDMRVLRAVDVPAL 615
MGCLDE TLEYGQ + + K PCLHPGD+R+L A+DV AL
Sbjct: 1 MGCLDETQTLEYGQVFVHCSIPGRSSEGNFVVKGKVVVAKNPCLHPGDVRLLDAIDVKAL 60
Query: 616 HHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILAR 675
HHMVDCV+FP KG+RPH NECSGSD DG++YFVCWD + Q +P +Y PAP L
Sbjct: 61 HHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDTELTCIKQVKPMSYKPAPTIQLDH 120
Query: 676 DVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTG 735
DVTIE+V+EYFA+Y+VND LG I NAH V+A KAMS C L KL SI DF KTG
Sbjct: 121 DVTIEEVQEYFANYMVNDGLGAIANAHTVFADKNSKKAMSAECIKLAKLFSIAVDFPKTG 180
Query: 736 VAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQF 795
V A +P LRV YPDFM+K +K Y S ++G L+R V ++ + + F +E A +
Sbjct: 181 VPANLPRNLRVHEYPDFMDKPNKATYVSNGVLGKLFRGVKDVSSDVSAFEIFTREVATKC 240
Query: 796 YDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKK 855
YD DMEV+GF++ + F Y+T+YD KLGNLMDYYGIKTE E++S I++MAKSFDK+
Sbjct: 241 YDPDMEVDGFEKYLRE--AFDYKTKYDFKLGNLMDYYGIKTEPELVSGNILKMAKSFDKR 298
Query: 856 RDLEAISFSVRSLRKEARAWFNKKKNDSDSSHKDV 890
+DLE I+F+++SLRKE R WFN +N+S S++ D+
Sbjct: 299 KDLEQIAFAMKSLRKEVRFWFN--ENESKSTYDDI 331
>gi|260789117|ref|XP_002589594.1| hypothetical protein BRAFLDRAFT_81564 [Branchiostoma floridae]
gi|229274774|gb|EEN45605.1| hypothetical protein BRAFLDRAFT_81564 [Branchiostoma floridae]
Length = 1867
Score = 348 bits (892), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 233/689 (33%), Positives = 343/689 (49%), Gaps = 92/689 (13%)
Query: 266 IYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQIS 325
+Y K++VTP+++ F PE + NRVVR Y +DNF+R++F DED KL +
Sbjct: 384 VYARKVVVTPTQMLFLKPEPIVENRVVREY--GVDNFIRVAFRDEDFSKL---------A 432
Query: 326 STNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAA--DI 383
TN + RV L GI IG++ F+ L SNSQ RE+ WM+A+ + T + DI
Sbjct: 433 VTNPNSIRCVTSRVKDVLEKGIRIGERNFKYLGSSNSQMREHGCWMYAAADKTTTSTSDI 492
Query: 384 RERMGDFREIKNVTKYAARLGQSFASSREALHVD----------------------SNIG 421
R MGD + V Y +RLGQ F+SS A+ V IG
Sbjct: 493 RGWMGDLSHERCVATYVSRLGQFFSSSWNAVSVSVEDRSVELIADVETSSGTHTFSDGIG 552
Query: 422 KISAELAETVAKKCGYAIYTPSAFQIRYGGYK--------------VTLRNNMFKYKSES 467
KIS LA+ VA G + PSAFQIRY G K + +R +M K++SE
Sbjct: 553 KISVPLAKKVAAALGVSP-VPSAFQIRYAGCKGVLAQDPTLGNTDRIQIRGSMKKFESEH 611
Query: 468 TSLDILANS-----KYQREGVARLRLDNV----FERKQREVVARLDAILTDSSKVQEALE 518
+L++ + + R+ + L NV F + Q V+ +L +L + A++
Sbjct: 612 KTLEVTSVTTPGVLSLNRQAITLLSGLNVPDMEFLKLQERVLNQLAEMLILD---EAAVK 668
Query: 519 LMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQA--MMG 576
+S A ++ L + G EPF M + + + EL R RI I G+ MMG
Sbjct: 669 ALSGARVGMDIRALHDSGISLTTEPFFRSMLLAVYRNRMGELLRRTRIEIPAGEGRIMMG 728
Query: 577 CLDEKGTLEYGQ--------------------GLMVVAKKPCLHPGDMRVLRAVDVPALH 616
+DE G L+YGQ G + V K PC HPGDMR AVDVP L
Sbjct: 729 TMDETGKLQYGQVFIQYSREVDKPQADKVVHQGQVTVTKNPCFHPGDMRKFTAVDVPELR 788
Query: 617 HMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTA-YTPAPEKILAR 675
HMVDC++FP++G RPH +E SGSD DG++YFV W I P + +P +T P+++L R
Sbjct: 789 HMVDCIVFPSRGPRPHPDEMSGSDLDGDMYFVTWREGLILPRENRPAMDFTAQPKRVLHR 848
Query: 676 DVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTG 735
V D+ E+FA+YI ++ LG+I NAH+V+A E S +C DL +L S D KTG
Sbjct: 849 PVQESDMIEFFAEYIGSNQLGLIANAHLVHADKEDQGIFSQKCIDLAQLHSDAVDAPKTG 908
Query: 736 VAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQF 795
+ LR ++YPDFM K DK Y S+ I+G L+R+ + + +
Sbjct: 909 QCPELKGDLRPEVYPDFMMKSDKPQYRSERIIGRLFRKCQELDSANQRSGTDDIVYHTSG 968
Query: 796 YDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKK 855
D D+ GF D Y+N + ++M YGI +E E++S CI+++ +
Sbjct: 969 IDHDLVREGFDSYIE--DAQTQLNIYNNMMMSIMSLYGITSEGEVVSGCILKVKQRLGLL 1026
Query: 856 RD-----LEAISFSVRSLRKEARAWFNKK 879
++ E + ++L ++ RA F K+
Sbjct: 1027 KNERFEVTEYVRARFKTLWRKTRAEFFKQ 1055
>gi|312283345|dbj|BAJ34538.1| unnamed protein product [Thellungiella halophila]
Length = 998
Score = 347 bits (889), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 208/581 (35%), Positives = 312/581 (53%), Gaps = 86/581 (14%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLS------ 321
+ ++++TP++ Y PE+ LSNRV+R Y + FLR++F+DE + + S VLS
Sbjct: 411 IRRLVITPTRAYCLPPEVELSNRVLRKYKAVSERFLRVTFMDESMQTMNSNVLSYFVAPI 470
Query: 322 -PQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTA 380
++S++ ++T +++RV + L +G + +K+ LAFS++Q R+ + W F+
Sbjct: 471 VKDLTSSSFSQKTHVFKRVKTLLTDGFKLCGRKYSFLAFSSNQLRDRSAWFFSEDGNTRV 530
Query: 381 ADIRERMGDFREIKNVTKYAARLGQSFASS-------------------REALHVDSNIG 421
+DI+ MG F++ KNV K AAR+G F+S+ R IG
Sbjct: 531 SDIKIWMGKFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTELPEIERNGYTFSDGIG 589
Query: 422 KISAELAETVAKKCGYAI-YTPSAFQIRYGGYK--------------VTLRNNMFKYKSE 466
IS +LA+ V +K + YTP A+QIRY G+K + LR++M K+ S+
Sbjct: 590 TISPDLADEVMEKLKLDVHYTPCAYQIRYAGFKGVVARWPSKGDGIRLALRHSMNKFHSK 649
Query: 467 STSLDILANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEAL 517
T L+I + +++Q R+ ++ L + D +F Q ++ +L+ IL D E L
Sbjct: 650 HTILEICSWTRFQPGFLNRQIISLLSVLGVPDEIFWDMQESMLCKLNRILDDIDVAFEVL 709
Query: 518 ELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGC 577
S AE N +L+ G+KP EP L M + + L LR ++RIF+ +G+ +MGC
Sbjct: 710 T-TSCAEQGNTAAIMLSAGFKPKIEPHLRGMLSSVRTAQLWGLREKSRIFVSSGRWLMGC 768
Query: 578 LDEKGTLEYGQ--------------------------------GLMVVAKKPCLHPGDMR 605
LDE G LE GQ G + +AK PCLHPGD+R
Sbjct: 769 LDEAGILEQGQCFIQVSKPSIENCFSRHGSRFKESKADMQVVKGYVAIAKNPCLHPGDVR 828
Query: 606 VLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ--FQPT 663
+L AVDVP LH M DC++FP G+RPHTNE SGSD DG++YFV WD IPP + +
Sbjct: 829 ILEAVDVPQLHDMYDCLIFPQNGDRPHTNEASGSDLDGDLYFVAWDQKLIPPSRESWHAM 888
Query: 664 AYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVK 723
Y A EK L R V +D+ ++F + N+ LG ICNAHVV+A AM C L +
Sbjct: 889 QYDAAKEKTLGRPVNHQDIIDFFVKNMANEHLGTICNAHVVHADRSEYGAMDEECLLLAE 948
Query: 724 LSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQ 764
L++ DF KTG ++P L+ K+YPDFM K+D Y S+
Sbjct: 949 LAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYLSK 989
>gi|291228412|ref|XP_002734181.1| PREDICTED: RNA-dependent RNA polymerase Family family member
(rrf-3)-like [Saccoglossus kowalevskii]
Length = 1491
Score = 345 bits (886), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 243/719 (33%), Positives = 368/719 (51%), Gaps = 121/719 (16%)
Query: 267 YVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISS 326
Y+ +++VTPS++ F PE+ NRV+R Y +E RL F DE+ +L + V ISS
Sbjct: 383 YLRRVMVTPSRLIFLQPELMFENRVLRRYSEEY--CARLVFKDENYQRLSNPV---SISS 437
Query: 327 TNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE-LTAADIRE 385
+ +++STL+NG + D+ +E LA SNSQ RE+ W +A TAA+IRE
Sbjct: 438 D-------VANKIISTLQNGFQVADRNYEFLACSNSQLREHGCWFYAKDNHGNTAANIRE 490
Query: 386 RMGDFREIKNVTKYAARLGQSFASSREALHV-----------------DSN--------- 419
MGDF +I+ V Y +R+GQ F++S E ++V D N
Sbjct: 491 WMGDFSKIRCVATYMSRMGQCFSTSEETVNVTVEDVTVSNIEDITGGMDINQKPYCFSDG 550
Query: 420 IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK-------------VTLRNNMFKYKSE 466
IGKIS +L E + +K + SA+QIRY G K + +R +M K+ SE
Sbjct: 551 IGKISKQLIEKICEKTEKHV-VASAYQIRYAGSKGMVALDPSLTGEQIMIRKSMLKFPSE 609
Query: 467 STSLDILANSKYQREGVARLRL---------DNVFERKQREVVARLDAILTDSSKVQEAL 517
+++I+ +K R + R + D VF + Q ++ L + K A
Sbjct: 610 HDNIEIMNLTKPARLHLNRQVITILSGLGIEDKVFLKLQHRMLNNLANMFL---KEDVAA 666
Query: 518 ELMSSAENTNV-LKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFI--QNGQAM 574
+S + K ++ CG EPF + Q + S L ELR RARI + Q + M
Sbjct: 667 AWLSRRSQIGINFKHMMTCGISLTTEPFFKSLLQAVYKSLLGELRRRARIILPPQFARNM 726
Query: 575 MGCLDEKGTLEYGQ--------------------GLMVVAKKPCLHPGDMRVLRAVDVPA 614
MG +DE G L+YGQ G +VV K PC HPGD+R +AVD+PA
Sbjct: 727 MGVIDETGALQYGQVFIQYSKKLDKPQKEKIVHSGPVVVTKFPCYHPGDVRKFQAVDIPA 786
Query: 615 LHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQF-----QPTAYTPAP 669
L+H++DC++FP +G RPH NE +GSD DG+ YFV W +P L F + + A
Sbjct: 787 LYHLIDCIVFPRQGPRPHPNEMAGSDLDGDEYFVTW----LPELLFDRENHEAMPFPAAV 842
Query: 670 EKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVG 729
+K L V + D+ ++ +YI ND LG++ NAH+ A + D S+ C ++ KL S
Sbjct: 843 KKELTNPVEVADMIKFVTEYIQNDCLGLMANAHLAMADQQSDGIFSDMCLNICKLLSEAV 902
Query: 730 DFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAK 789
DF+KTG T+ + YPDFM KQDKT Y+S+HI+G LYR + +T K
Sbjct: 903 DFAKTGNCPTLDKNQQPNTYPDFMGKQDKTNYKSKHILGKLYRHCWSLESAT-----IPK 957
Query: 790 EGAMQFY-DTDMEVNGFK-EVAMQFDGF--------KYRTEYDNKLGNLMDYYGIKTEAE 839
A ++ D+D +V + + ++ + G+ K +Y+N+L LM YGI++EAE
Sbjct: 958 LRAHSYHKDSDYDVRNVEVDQSLLYPGYEEHLSFANKSLKKYNNQLRLLMSQYGIESEAE 1017
Query: 840 MLSRCIMEMAK-------SFDKKRDLEAISFSVRSL-RKEARAWFNKKKN-DSDSSHKD 889
+S CI ++ K FD ++ + A +RS+ R+E + F + N SD+ +D
Sbjct: 1018 AISGCITKLNKRITGKGERFDAEKVIRAKLAHLRSVTRREFDSSFGDEANGGSDNDDED 1076
>gi|45861741|gb|AAS78669.1| RdRp1m truncated protein [Nicotiana benthamiana]
Length = 479
Score = 340 bits (872), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 207/475 (43%), Positives = 268/475 (56%), Gaps = 98/475 (20%)
Query: 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSR-AHAIVEFTTVEAADF 59
M K I ++GF L S +AVK FLE HTG GTV +EV Q+KG R + A V+F + ++A+
Sbjct: 1 MGKTIQVFGFPYLLSAEAVKTFLENHTGNGTVYALEVKQSKGGRRSFARVQFASNKSAEL 60
Query: 60 IKCLARERLSYGNSFLKASSAKRRTPHFAKRTPHYKLGGDLKLNFGCQISKDKFSVFWSQ 119
I LA L YG S+LKA + T RT + G + LNFGCQIS KF+V S+
Sbjct: 61 IIDLASMGLYYGPSYLKA--WEMNTDIVQPRTYVQHMDG-VTLNFGCQISDKKFAVLGSK 117
Query: 120 ENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSGHSVS------------ 167
+ VS+K L+K FFLSY S DYKL+LS E+IWQ+ LHRP G
Sbjct: 118 D-VSIKFGIGLKKIYFFLSYGSSDYKLQLSYENIWQVVLHRPYGQKAQFLLLQLFGAPRI 176
Query: 168 ------------------------------IGQSSAICLELPSRALIPKALKDFFHYKES 197
IG SS++CLE + +P + FF+YKES
Sbjct: 177 YKRLEESCYSFFKETPDDQWVRTTDFTPSWIGLSSSLCLEFHNGIRLPNFRESFFYYKES 236
Query: 198 LVQFTLLPGFVFSCN-------------------------SDLNQDG------------- 219
Q L GF FS + S L Q G
Sbjct: 237 GNQVILRTGFTFSFSQKLALVPIVHLPNGVDLPYKILFKISSLIQHGCFPGVALNFNFFQ 296
Query: 220 ------------KHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIY 267
+HALE L++L+ECCYDPV WL EQY +++ Q P SP++ LD GL+Y
Sbjct: 297 LVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKRRQLPKSPSITLDDGLVY 356
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
V +++VTP KVYF GPE+++SNRV+R+Y ++IDNFLR+SFVDE+ K++ST L P+ S+
Sbjct: 357 VRRVVVTPCKVYFSGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKIHSTDLLPRASTG 416
Query: 328 NGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAAD 382
NG RT IY R+LSTLRNG VIGDKKFE LAFS+SQ R+N++WMFASRP LTA D
Sbjct: 417 NG-MRTDIYLRILSTLRNGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAND 470
>gi|260801473|ref|XP_002595620.1| hypothetical protein BRAFLDRAFT_64730 [Branchiostoma floridae]
gi|229280867|gb|EEN51632.1| hypothetical protein BRAFLDRAFT_64730 [Branchiostoma floridae]
Length = 1282
Score = 338 bits (868), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 240/694 (34%), Positives = 339/694 (48%), Gaps = 92/694 (13%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
V ++ VTP+++ F PEI NR++R Y + DNF+R+S DED KL S+
Sbjct: 257 VRRVFVTPTRLMFMHPEIVRDNRILRKYGE--DNFMRVSIRDEDFCKL---------SAV 305
Query: 328 NGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERM 387
GE T + RV L++G+++GD+K+ LA SNSQ RE+ +W FAS + TA IR+ M
Sbjct: 306 GGEEET-TFTRVKKFLQDGLLVGDRKYVFLAASNSQLREHNVWFFASDGKNTAESIRKDM 364
Query: 388 GDFREIKNVTKYAARLGQSFASSREALHV-----------------------DSNIGKIS 424
GDF +IK AR+GQ F+++ ++ IGKIS
Sbjct: 365 GDFSDIKCPATVLARMGQCFSNTEPSVTALISAGEVVRIPEVKGGYPNVYCFSDGIGKIS 424
Query: 425 AELAETVAKKCGYA---IYTPSAFQIRYGGYK-------------VTLRNNMFKYKSEST 468
LA+ V ++ PSA+QIRYGG K + +R +M K+ S
Sbjct: 425 QSLAQKVNERRAIGRGETEVPSAYQIRYGGVKGVVAVDPSLDSDVMEVRPSMMKFLSFDQ 484
Query: 469 SLDILANSKYQREGVARLRL---------DNVFERKQREVVARLDAILTDSSKVQEALEL 519
++I S R + R + D F++ Q ++ L +L E+++
Sbjct: 485 QIEICMTSHPGRLYLNRQVITILSALGVPDQTFQQLQEAMLQNLSDMLVREDVAFESMKR 544
Query: 520 MSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFI--QNGQAMMGC 577
+ L L CG EPF M Q L ELR RARI I + G+ M+G
Sbjct: 545 RAQPLGLP-LGRLSRCGLHVTTEPFFRAMLQKMFTCFLGELRRRARIEIPPEYGRNMLGV 603
Query: 578 LDEKGTLEYGQ-------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHM 618
LDE GTLEYGQ G +VV + PC HPGD+R LRAVD+P+LHHM
Sbjct: 604 LDETGTLEYGQVFVQYTEDITDKGGQTKVTGDVVVTRNPCFHPGDLRKLRAVDIPSLHHM 663
Query: 619 VDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQ-PTAYTPAPEKILARDV 677
VD ++FP+KG RPH NE SG D DG+ +FV W I P Q P +T P+K L V
Sbjct: 664 VDVIVFPSKGPRPHPNEMSGGDLDGDQFFVTWYPGLIFPKPNQGPMDFTAQPKKELP-SV 722
Query: 678 TIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVA 737
D+ ++ +YI ND LG I NAH+ +A++E + S++C L K S DF KTGV
Sbjct: 723 ETHDIIDFIVEYIANDRLGQIANAHLAFAHTEKEGIFSSKCLGLAKKHSDAVDFPKTGVC 782
Query: 738 ATIPSRLRVKIYPDFM-EKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQF- 795
T+ R YPDFM +K+ KT S+ + G +YRE I + + G
Sbjct: 783 PTLKMEERPLEYPDFMGKKKGKTSRRSEAVQGKMYRECLRIERVCSHLHKDKDTGGKNIE 842
Query: 796 YDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSF-DK 854
D D K A+ + + ++ +KL +LM YGI TEAE +S C + M D+
Sbjct: 843 IDPDFTHKDRKRYAVS--SRQAKDDFYDKLQDLMSQYGIDTEAEAVSGCFVRMHHHMEDR 900
Query: 855 KRDLEAISFS---VRSLRKEARAWFNKKKNDSDS 885
EA + + LRK+ R F + DS
Sbjct: 901 YERFEAERIAKDRIAHLRKQTRQEFFAEFGGEDS 934
>gi|222618586|gb|EEE54718.1| hypothetical protein OsJ_02054 [Oryza sativa Japonica Group]
Length = 1571
Score = 338 bits (866), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 220/668 (32%), Positives = 354/668 (52%), Gaps = 61/668 (9%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSP----- 322
V ++++TP++ Y PE+ SNRV+R Y + D FLR++F+DE + L + VL+
Sbjct: 824 VRRLVITPTRAYCLPPEVERSNRVLRHYHEVADRFLRVTFMDEGMQVLNNNVLNSFTAPI 883
Query: 323 --QISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTA 380
+ S +++T +Y+RV L G + +K+ LAFS++Q R+ + W FA + T
Sbjct: 884 VKDLMSNFFQQKTTVYKRVRMLLTEGFHMCGRKYSFLAFSSNQLRDKSAWFFAEDRKTTV 943
Query: 381 ADIRERMGDFREIKNVTKYAARLGQSFASSREAL-----HVDSN--------------IG 421
IR+ MG F KNV K+AAR+GQ F+S+ + VD + IG
Sbjct: 944 EAIRKWMGRFTS-KNVAKHAARMGQCFSSTYATVTMRPDEVDESFDDVVHNEYIFSDGIG 1002
Query: 422 KISAELAETVAKKCGYAIYTPSAFQIRYGGYK--------------VTLRNNMFKYKSES 467
KI+ +LA VA++ PSA+QIR+ G+K + LR +M K++S
Sbjct: 1003 KITPDLALEVAERLQLTDNPPSAYQIRFAGFKGVIAVWQGHGDGTRLFLRPSMRKFESNH 1062
Query: 468 TSLDILANSKYQREGVARLRL---------DNVFERKQREVVARLDAILTDSSKVQEALE 518
L++++ +K+Q + R + D++F + Q +++ L+ IL+D E L
Sbjct: 1063 LVLEVVSWTKFQPGFLNRQIIILLSSLNVPDSIFWQMQETMLSNLNNILSDRDVAFEVLT 1122
Query: 519 LMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCL 578
S A++ N +L+ G++P EP L M ++ L +L +ARIF+ G+ +MGCL
Sbjct: 1123 -TSCADDGNTAALMLSAGFEPRTEPHLKAMLLAIRSAQLQDLLEKARIFVPKGRWLMGCL 1181
Query: 579 DEKGTLEYGQGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSG 638
DE G LE GQ + A P L+ V + + +L KGERPH NE SG
Sbjct: 1182 DELGVLEQGQ-CFIRATVPSLN--SYFVKHGSRFSSTDKNTEVILGTVKGERPHANEASG 1238
Query: 639 SDQDGEIYFVCWDHDRIPPLQ--FQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLG 696
SD DG++YFV WD IPP + + P Y+P K L R V+ D+ ++F +++++LG
Sbjct: 1239 SDLDGDLYFVTWDEKLIPPGKKSWNPMDYSPPEAKQLPRQVSQHDIIDFFLKNMISENLG 1298
Query: 697 IICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQ 756
ICNAHVV+A AM +C L +L++ DF KTG A +P L+ K+YPDFM K+
Sbjct: 1299 RICNAHVVHADLSEYGAMDEKCIHLAELAATAVDFPKTGKLAIMPPHLKPKVYPDFMGKE 1358
Query: 757 DKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFK 816
D Y+S+ I+G LYR + + + + YD D+EV G + ++
Sbjct: 1359 DGQSYKSEKILGRLYRSIQEASNGDVVSQEVCTPNDLP-YDIDLEVPGASDFLAS--AWQ 1415
Query: 817 YRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKR-DL-EAISFSVRSLRKEARA 874
+ YD +L L+ Y ++TEAE+++ I + K+ KK+ D+ + + + +LRKE ++
Sbjct: 1416 CKCSYDAQLSALLSQYRVRTEAELVTGHITFLVKNSSKKQGDIKDRLKTAYSALRKEFKS 1475
Query: 875 WFNKKKND 882
F +D
Sbjct: 1476 TFESIASD 1483
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 70/120 (58%), Gaps = 7/120 (5%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSP----- 322
V ++++TP++ Y PE+ SNRV+R Y + D FLR++F+DE + L + VL+
Sbjct: 391 VRRLVITPTRAYCLPPEVERSNRVLRHYHEVADRFLRVTFMDEGMQVLNNNVLNSFTAPI 450
Query: 323 --QISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTA 380
+ S +++T +Y+RV L G + +K+ LAFS++Q R+ + W FA + TA
Sbjct: 451 VKDLMSNFFQQKTTVYKRVRMLLTEGFHMCGRKYSFLAFSSNQLRDKSAWFFAEDRKTTA 510
>gi|260801457|ref|XP_002595612.1| hypothetical protein BRAFLDRAFT_64722 [Branchiostoma floridae]
gi|229280859|gb|EEN51624.1| hypothetical protein BRAFLDRAFT_64722 [Branchiostoma floridae]
Length = 1207
Score = 332 bits (852), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 228/682 (33%), Positives = 352/682 (51%), Gaps = 75/682 (10%)
Query: 259 VALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYST 318
++L L YV +++VTP+ + F PEI NR++R Y +E FLR+SF+DE KL
Sbjct: 278 MSLPATLRYVRRVIVTPTTLLFLQPEIMFENRMLRDYGEEF--FLRVSFLDEGFQKLQGG 335
Query: 319 VLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPEL 378
+ + G I+ RV + L+ G+ +G++ + LA SNSQ R++ +W F+ +
Sbjct: 336 IAT-------GLEEEDIFARVRNVLQTGVRVGERYYRFLAASNSQLRQHGVWFFSDDGKN 388
Query: 379 TAADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSNIGKISAELAETVAKKCGYA 438
TA IR MGDF + Y AR+GQ F+++ + +N+G + E+++ GY
Sbjct: 389 TAESIRAEMGDFSGCRCPATYLARMGQCFSTTEPTV---ANVGNNAVEISDITG---GYD 442
Query: 439 IYT--PSAFQIRYG---------GYKVTLRNNMFKYKSESTSLDILANSKYQREGVARLR 487
P F G G + R++M K+ S ++I S R + R
Sbjct: 443 PVNRKPYCFSDGIGKISKDLARKGEIMQYRSSMNKFWSLHDVIEICTTSHPGRLFLNRQV 502
Query: 488 L---------DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNCGYK 538
+ D VF++ Q+E + L + + EAL + + + LL G +
Sbjct: 503 ITILSQLGVPDIVFQQLQQERLFELADMFLLETSAAEALCQRAQMKGLP-YRRLLKMGVQ 561
Query: 539 PDAEPFLSMMPQTFHASNLLELRTRARIFI--QNGQAMMGCLDEKGTLEYGQ-------- 588
EPF M Q + S++ E+R RARI I + G+ M+G LDE GTLEYGQ
Sbjct: 562 LTTEPFFRSMLQKIYKSSVGEIRRRARIGIPPEYGRIMLGVLDETGTLEYGQVFVQYTED 621
Query: 589 ------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNEC 636
G +VV + PCLHPGD+R L+A+DVPAL+HMVD ++FPAKG RPH NE
Sbjct: 622 IANQDGKVRVLEGDVVVTRTPCLHPGDVRKLQAIDVPALYHMVDVIVFPAKGPRPHPNEM 681
Query: 637 SGSDQDGEIYFVCWDHDRIPPLQF-----QPTAYTPAPEKILARDVTIEDVEEYFADYIV 691
+G D DG+ +FV W +P L F QP + +P K +VTI+ + ++ DYI
Sbjct: 682 TGGDLDGDDFFVTW----LPDLIFNGPNEQPMHFR-SPTKREVPNVTIKHLIDFIVDYIK 736
Query: 692 NDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPD 751
ND LG+I NAH+V+A +EP S+ C L S DF KTGV + R YPD
Sbjct: 737 NDRLGLIANAHLVFADTEPMGIFSDVCQRLAVKHSDAVDFPKTGVCPDLDKTERPLEYPD 796
Query: 752 FMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQ 811
FM K+DKT S+ ++G +YRE I T ++ ++G ++ D + + V+
Sbjct: 797 FMGKRDKTTRRSERVLGKMYRECQMIENVCTQVE---RKGTVEQVHPDYGLVIGEHVSYV 853
Query: 812 FDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFD---KKRDLEAIS-FSVRS 867
+ R Y+++L +LM YGI+TE+E +S CI+++ K D ++ ++E ++ +
Sbjct: 854 KKARRSRDRYNDQLRSLMAQYGIETESEAVSGCIVKLHKHMDDRYERYEIERVAKVRIED 913
Query: 868 LRKEARAWFNKKKNDSDSSHKD 889
LRK R F ++ +S D
Sbjct: 914 LRKRTRQDFFEEFGGEESVELD 935
>gi|302505092|ref|XP_003014767.1| hypothetical protein ARB_07328 [Arthroderma benhamiae CBS 112371]
gi|291178073|gb|EFE33864.1| hypothetical protein ARB_07328 [Arthroderma benhamiae CBS 112371]
Length = 1296
Score = 323 bits (829), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 230/759 (30%), Positives = 365/759 (48%), Gaps = 114/759 (15%)
Query: 198 LVQFTLLPGFVFSCNSDLNQDGKHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSP 257
L ++T+ F S +DGK LE + + +DP+ Q+ V++ + P
Sbjct: 244 LSEYTIDKDFAKKLESLGERDGKDLLEYVAQEKTVYHDPMEIFNIQFFSGVTNRRIPKY- 302
Query: 258 AVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYS 317
Y+ VTPS +YF P + SNRV+R Y + D FLR+ F DE
Sbjct: 303 -------CCYMRSATVTPSTIYFNTPTVDTSNRVIRHYIEYADRFLRVRFTDEKY----- 350
Query: 318 TVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE 377
+I+ST ++ RV T+ NGI +GD+ +E LAF NSQ RE+ + FAS P
Sbjct: 351 ---EGRINSTYNNCMDEVFTRVKRTMTNGITVGDRHYEFLAFGNSQFREHGAYFFASLPN 407
Query: 378 LTAADIRERMGDFREIKNVTKYAARLGQSFASS----------REALHVDSN-------I 420
LTAA+IR MG F +IK V K+AARLGQ F+++ RE V+ N +
Sbjct: 408 LTAANIRAWMGHFSDIKIVAKHAARLGQCFSTTRAVTGCPVTVREIDEVERNGYIFSDGV 467
Query: 421 GKISAELAETVAKKCGYAIYT---PSAFQIRYGGYK-------------VTLRNNMFKYK 464
G+IS LA+ + + + PS FQ R GG K V +R + +K+
Sbjct: 468 GRISKFLAQMIMTEFKLQTPSEEPPSVFQFRLGGCKGILTVSPEAQRREVHIRKSQYKFA 527
Query: 465 SESTSLDILANSKYQREGVARLRL---------DNVFERKQREVVARLDAILTDSSKVQE 515
+ L+I+ S++ + R + DN+F K R ++ L+ +T +K
Sbjct: 528 AIHNGLEIIRWSQFAAAHLNRQLIVVLSALGVSDNIFIEKLRLMLEDLEQAMTSETKAMS 587
Query: 516 ALE-LMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAM 574
L+ + + T +L ++++ G++ +PF+ + + + A + L+ +A++FI G +
Sbjct: 588 MLQKRVDPNQMTLLLAQMVHDGFQGSCDPFVKSLLELWRAWQIKYLKEKAKVFIDQGACL 647
Query: 575 MGCLDEKGT-------------------LEY-------------------GQGLMVVAKK 596
GCLDE T LEY +G ++A+
Sbjct: 648 FGCLDETATLKGYYEKKRPSIEATYEERLEYLPEIFVQVFDNEEEKKYRVIEGPCILARN 707
Query: 597 PCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIP 656
P LHPGD+RV+RAV+VPALHH+ D ++FP G+R + CSG D DG+ Y V WD D +P
Sbjct: 708 PSLHPGDIRVVRAVNVPALHHLKDVIVFPQTGDRDVPSTCSGGDLDGDDYIVIWDQDLVP 767
Query: 657 -PLQF--QPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKA 713
P + +P YT + + L RDVT+ D+ +F Y+ ND L I +AH+ +A D
Sbjct: 768 LPKDWFREPMDYTASNAQSLTRDVTVNDITSFFVTYMKNDRLPQIAHAHLAFADYLEDGV 827
Query: 714 MSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDK---TWYESQHIVGNL 770
RC L +L S D++K+G+ A + L + +P FMEK+ K Y+S+ I+G +
Sbjct: 828 NDERCIQLAQLHSAAVDYNKSGIPANMTRDLVPRKWPHFMEKKYKPKEAQYQSKKILGQI 887
Query: 771 YREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMD 830
Y V + F + + + D+ V+ M K + YD + +M
Sbjct: 888 YDIVERVEFRPKLEAPFDE----RILNCDISVSE----EMVLAAKKLKGLYDADMRRIMA 939
Query: 831 YYGIKTEAEMLSRCIM---EMAKSFDKKRDLEAISFSVR 866
+ IKTE E+ S ++ M+K + +L IS ++R
Sbjct: 940 QHEIKTEFEVWSTFVLGHANMSKDYKFHEELGQISSALR 978
>gi|327353920|gb|EGE82777.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
Length = 1672
Score = 322 bits (824), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 227/742 (30%), Positives = 364/742 (49%), Gaps = 114/742 (15%)
Query: 220 KHALEMLFHL---RECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPS 276
K A E+L H+ + YDP+ + K ++G+ P G Y+ VTPS
Sbjct: 640 KKAKELLEHVAMNKTIYYDPMEIFNIPFPKGATNGRIP--------GHCCYIRSADVTPS 691
Query: 277 KVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDED-LGKLYSTVLSPQISSTNGERRTRI 335
+ + P + SNRV R + + D FLR+ F DE +GK+Y +S N + ++
Sbjct: 692 TICYDIPSVDTSNRVFRYHREHADRFLRVRFCDEKYIGKIYPN------NSGNSQCMEKV 745
Query: 336 YERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKN 395
Y RVL TL++GI IGD+++E LAF NSQ RE+ + FAS P LTAA+IR +MGD I+
Sbjct: 746 YARVLRTLQHGITIGDRRYEFLAFGNSQLREHGAYFFASLPHLTAANIRAQMGDLNNIRV 805
Query: 396 VTKYAARLGQSFASSREALH----------VDSN-------IGKISAELAETVAKKCGYA 438
V KYAARLGQ F+++R ++ N +G++S L + + G
Sbjct: 806 VAKYAARLGQCFSTTRAVTSCPVQIKKIDDIERNGYVFSDGVGRLSHFLTQMIQSDLGIK 865
Query: 439 IYT---PSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLDILANSKYQREG 482
+ PS FQ R GG K V +R + FK+ + L+I+ +S +
Sbjct: 866 TPSGEPPSVFQFRLGGCKGILAVSPEARQREVHIRRSQFKFPASHNGLEIIRHSHFSYAT 925
Query: 483 VARLRL---------DNVFERKQREVVARLDAILTDSSKVQEALE-LMSSAENTNVLKEL 532
+ R + D VF K ++A L+ +TD K L+ + + T VL ++
Sbjct: 926 LNRQLILILSALGTPDEVFIAKLSMMLANLEQAMTDEDKAVSLLQKYVDPNQMTLVLADM 985
Query: 533 LNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL-------- 584
+ G++ EPF+S + + + + L+ +A+I I G ++GC+DE TL
Sbjct: 986 IRDGFQGSREPFVSSLLELWRTWQIKYLKEKAKIAIDEGAFLLGCIDESKTLKGYFRSAR 1045
Query: 585 ---------------------------EYG--QGLMVVAKKPCLHPGDMRVLRAVDVPAL 615
+Y +GL ++A+ P LHPGD+RV++AVD PAL
Sbjct: 1046 PKANSTYQERVDCLPEIFVQVWRHSEGKYAVIEGLCILARNPSLHPGDIRVVKAVDAPAL 1105
Query: 616 HHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPE-KILA 674
HH+ D V+ P G+R N CSG D DG+ Y V WD +P F AP+ ++L
Sbjct: 1106 HHLRDVVVLPQTGDRDLANICSGGDLDGDDYIVIWDKSMLPTDWFHEPMDNCAPKPEVLD 1165
Query: 675 RDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKT 734
RDVT++D+ +++ +Y+ N L I AH+ A + D +C L L S D++K+
Sbjct: 1166 RDVTVDDITKFYVNYMQNCCLSQIARAHMALADFQEDGVKDEKCIQLAALHSAAVDYNKS 1225
Query: 735 GVAATIPSRLRVKIYPDFMEKQDKT---WYESQHIVGNLYREVNGIAPSTTTIKSFAKEG 791
G+ + L+ K++P FME++ K Y S I+G LY + I + I+ + E
Sbjct: 1226 GIPVRMTRNLKPKVWPHFMERKMKNKNAEYRSAKILGQLYDMASHID-IRSKIQFLSPEE 1284
Query: 792 AMQF----YDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIM- 846
QF + +EV+ K +++ D + +YD + +M + I+TE E+ S ++
Sbjct: 1285 RPQFDKRILKSGIEVDE-KLLSVATD---LKMQYDTDMRRIMARHEIETELEVWSTFVLS 1340
Query: 847 --EMAKSFDKKRDLEAISFSVR 866
EM+ + D+ IS ++R
Sbjct: 1341 HSEMSNDYKFHEDIGRISSALR 1362
>gi|384245028|gb|EIE18524.1| RdRP-domain-containing protein, partial [Coccomyxa subellipsoidea
C-169]
Length = 723
Score = 321 bits (823), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 221/679 (32%), Positives = 342/679 (50%), Gaps = 114/679 (16%)
Query: 284 EISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTL 343
++ LSNRV+R + D FLR++F +E+ G+L P++ +R+ L
Sbjct: 1 QVELSNRVIRHHRQYSDRFLRVTFCEENGGRLCFANDIPRLED--------YMDRMEGIL 52
Query: 344 RNGIVIGDKKFETLAFSNSQERENTLWMFASRPE--LTAADIRERMGDFREIKNVTKYAA 401
++G+ + D+ F+ LAFS+ Q RE + W +A+ P+ TAADIR MGDF I+ V K+ A
Sbjct: 53 KDGLELADRHFDLLAFSSGQVREQSAWFWAA-PDSGPTAADIRAWMGDFDAIRCVAKFTA 111
Query: 402 RLGQSFASSREALHVDS------------------NIGKISAELAETVAKKCGY-----A 438
R+GQ F+S+ + L + + +G+IS EL+ VA + A
Sbjct: 112 RMGQCFSSTVDTLKLQAYTVQTVPDVERNGYCFSDGVGRISVELSRAVADRLEQLGRCPA 171
Query: 439 IYTPSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLDILANSKY-----QR 480
+ P A+QIRY G K +R +M K+++ + L+I ++Y R
Sbjct: 172 GWLPRAYQIRYAGCKGMVSLHMGLRGKRFEVRPSMNKFEASAQMLEICDYARYVPGYLNR 231
Query: 481 EGVARLRL------DNVFERKQREVV-------ARLDAILTDSSKVQEALELMSSAENTN 527
+ V L ++VF+R Q +L + K +A ++ +A
Sbjct: 232 QIVTLLMQKCLGVPNSVFQRLQARTALFNLNKSGQLRCFCLNLIKWGDAAIMLEAAH--- 288
Query: 528 VLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYG 587
++ G+ EP+L + A L +L+ + R+ + +MG +DE+G LE G
Sbjct: 289 ----IIRAGFDVGTEPYLKSILLCLRAHLLQDLKAKTRVRVPKAALLMGVMDEEGVLEPG 344
Query: 588 Q------------------GLMVVAKKPCLHPGDMRVLRAVDV---PALHHMVDCVLFPA 626
Q G +VVAK PC HPGD+R +A + P LHH+V+C++FP
Sbjct: 345 QVFLSVNSLPTMALPAIVTGTVVVAKNPCFHPGDVRKFQARPLFRSPELHHLVNCLVFPQ 404
Query: 627 KGERPHTNECSGSDQDGEIYFVCWDHDRI------PPLQFQPTAYTPAPEKILARDVTIE 680
KG+RPH +ECSGSD DG+ YFV W+ + P+ F PE + +
Sbjct: 405 KGQRPHPDECSGSDLDGDQYFVSWEPGLLFPGPNREPMSFHSQDPVLIPE---GQASLVG 461
Query: 681 DVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATI 740
DV ++F DYI ND LGII NAH+ A +PD A ++C L +L S DF+K+G A
Sbjct: 462 DVAQFFMDYIFNDLLGIIANAHLATADIKPDGAQCSQCLQLARLHSNAVDFTKSGRPAEF 521
Query: 741 PSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDM 800
LR YPDFM K++K +ES I+G L+R + P+ + A E D D+
Sbjct: 522 SRDLRPLSYPDFMMKKNKETHESSTIIGQLFRAIT--VPTPPLLSDIASETQP---DPDI 576
Query: 801 EVNGFKEV--AMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRDL 858
V GF++ A Q + RT Y++ L +M+ YG+ EAE++S CI + AK KK D+
Sbjct: 577 MVEGFQQFIPAAQ----EARTRYEHALVQIMNQYGVHNEAEIVSGCISKFAKHRRKKGDV 632
Query: 859 EAISF-SVRSLRKEARAWF 876
+ + +VR+LRK+ RA F
Sbjct: 633 KTMIIDAVRALRKKNRAEF 651
>gi|159127939|gb|EDP53054.1| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus fumigatus
A1163]
Length = 1423
Score = 321 bits (823), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 237/795 (29%), Positives = 382/795 (48%), Gaps = 125/795 (15%)
Query: 168 IGQSSAICLELPSRALIPKALKDFFHYKESLVQFTLLPGFVFSCNSDLNQDGKHALEMLF 227
+G + + L P R + L + L +FT+ F LN A+++L
Sbjct: 402 LGDETYVHLPFPVRYQLEVCLSHNY-----LSEFTMSREFAVKL---LNLGESEAVKLLE 453
Query: 228 HL---RECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPE 284
H+ E +DP+ ++ K + + P+ Y+ +TP+ +Y+ P
Sbjct: 454 HVAIKEEVYHDPMKIFDLKFAKGSTRAKIPSY--------CCYMRSARITPTTIYYNTPS 505
Query: 285 ISLSNRVVRSYPDEIDNFLRLSFVDEDL-GKLYSTVLSPQISSTNGERRTRIYERVLSTL 343
+ +SNRV+R Y + D FLR+ F DE L G++ ST I +T E ++ R+ L
Sbjct: 506 VDISNRVIRYYIEYADRFLRVRFTDEKLLGRINST-----IDNTMDE----VFTRIKRAL 556
Query: 344 RNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARL 403
NGIVIGD+++E LAF NSQ RE+ + FA P LTAA+IR MG F +I+NV K+AARL
Sbjct: 557 ANGIVIGDRRYEFLAFGNSQFREHGAYFFAPLPSLTAANIRAWMGTFNDIRNVAKHAARL 616
Query: 404 GQSFASS-----------------REALHVDSNIGKISAELAETVAKKCGYAIYT---PS 443
GQ F+++ R +G+IS LA+ A + + PS
Sbjct: 617 GQCFSTTRAIAGCPVQIRLIDDVVRNGYTFSDGVGRISKFLAQMAASELKIRTPSGDPPS 676
Query: 444 AFQIRYGGYK-------------VTLRNNMFKYKSESTSLDILANSKYQREGVARLRL-- 488
AFQ R GG K V +R + +K+ S L+I+ S+Y + R +
Sbjct: 677 AFQFRLGGCKGMLTVSPEAQRQEVHIRKSQYKFASVHNGLEIIRWSQYSMATLNRQLIIV 736
Query: 489 -------DNVFERKQREVVARL-DAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPD 540
D+VF K R ++ L +++ +DS + + + + T V+ +++ G++
Sbjct: 737 LSSLGIQDSVFHDKLRAMLQSLNESMESDSQALCWLKKYVDPNQMTLVVSQMVLDGFRSS 796
Query: 541 AEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL---------------- 584
EPF++ + + + A +L L+ +A+I I+ G ++GC+DE G L
Sbjct: 797 REPFVTSIMRLWKAWHLKYLKEKAKIVIEKGANLLGCMDETGILRGYSEWIPAKGASDEE 856
Query: 585 --------------------EYGQGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLF 624
E +G+ ++A+ P LHPGD+RV+RAV+VP L H+ D V+F
Sbjct: 857 KLAALPEIFVQIHHPDTGKCEVIEGVCILARNPSLHPGDIRVVRAVNVPQLSHLKDVVVF 916
Query: 625 PAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQF-QPTAYTPAPEKILARDVTIEDVE 683
P G+R + CSG D DG+ Y V WD D +P F +P YT + L +DVT+ +
Sbjct: 917 PQTGDRDIPSTCSGGDLDGDDYLVIWDQDLVPEDWFRKPMKYTSDKAQDLDQDVTVNHIT 976
Query: 684 EYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSR 743
+F Y+ ND L I +AH+ +A D +C L +L S D++KTG A +
Sbjct: 977 SFFVLYMKNDFLPRIAHAHLAWADRLEDGVNEEKCIRLAQLHSDAVDYNKTGKPANMARS 1036
Query: 744 LRVKIYPDFMEKQDK---TWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDM 800
L+ K++P FMEK+ K Y+S I+G LY V I F M F + +
Sbjct: 1037 LQPKVWPHFMEKKHKPKEMIYKSNKILGQLYDAVERI--------DFVPSLEMPFDERIL 1088
Query: 801 EVN-GFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIM---EMAKSFDKKR 856
+ G + +QF + +YD + +M + I TE E+ S ++ M+K +
Sbjct: 1089 TCSLGVSDDLVQF-ARDLKADYDAAMHRIMAQHEITTEFEVWSTFVLSHSNMSKDYKFHE 1147
Query: 857 DLEAISFSVRSLRKE 871
+L IS S+R + ++
Sbjct: 1148 ELGLISSSLRDMYRK 1162
>gi|146323311|ref|XP_754927.2| RNA-directed RNA polymerase (Sad-1) [Aspergillus fumigatus Af293]
gi|129558353|gb|EAL92889.2| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus fumigatus
Af293]
Length = 1423
Score = 321 bits (823), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 237/795 (29%), Positives = 382/795 (48%), Gaps = 125/795 (15%)
Query: 168 IGQSSAICLELPSRALIPKALKDFFHYKESLVQFTLLPGFVFSCNSDLNQDGKHALEMLF 227
+G + + L P R + L + L +FT+ F LN A+++L
Sbjct: 402 LGDETYVHLPFPVRYQLEVCLSHNY-----LSEFTMSREFAVKL---LNLGESEAVKLLE 453
Query: 228 HL---RECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPE 284
H+ E +DP+ ++ K + + P+ Y+ +TP+ +Y+ P
Sbjct: 454 HVAIKEEVYHDPMKIFDLKFAKGSTRAKIPSY--------CCYMRSARITPTTIYYNTPS 505
Query: 285 ISLSNRVVRSYPDEIDNFLRLSFVDEDL-GKLYSTVLSPQISSTNGERRTRIYERVLSTL 343
+ +SNRV+R Y + D FLR+ F DE L G++ ST I +T E ++ R+ L
Sbjct: 506 VDISNRVIRYYIEYADRFLRVRFTDEKLLGRINST-----IDNTMDE----VFTRIKRAL 556
Query: 344 RNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARL 403
NGIVIGD+++E LAF NSQ RE+ + FA P LTAA+IR MG F +I+NV K+AARL
Sbjct: 557 ANGIVIGDRRYEFLAFGNSQFREHGAYFFAPLPSLTAANIRAWMGTFNDIRNVAKHAARL 616
Query: 404 GQSFASS-----------------REALHVDSNIGKISAELAETVAKKCGYAIYT---PS 443
GQ F+++ R +G+IS LA+ A + + PS
Sbjct: 617 GQCFSTTRAIAGCPVQIRLIDDVVRNGYTFSDGVGRISKFLAQMAASELKIRTPSGDPPS 676
Query: 444 AFQIRYGGYK-------------VTLRNNMFKYKSESTSLDILANSKYQREGVARLRL-- 488
AFQ R GG K V +R + +K+ S L+I+ S+Y + R +
Sbjct: 677 AFQFRLGGCKGMLTVSPEAQRQEVHIRKSQYKFASVHNGLEIIRWSQYSMATLNRQLIIV 736
Query: 489 -------DNVFERKQREVVARL-DAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPD 540
D+VF K R ++ L +++ +DS + + + + T V+ +++ G++
Sbjct: 737 LSSLGIQDSVFHDKLRAMLQSLNESMESDSQALCWLKKYVDPNQMTLVVSQMVLDGFRSS 796
Query: 541 AEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL---------------- 584
EPF++ + + + A +L L+ +A+I I+ G ++GC+DE G L
Sbjct: 797 REPFVTSIMRLWKAWHLKYLKEKAKIVIEKGANLLGCMDETGILRGYSEWIPAKGASDEE 856
Query: 585 --------------------EYGQGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLF 624
E +G+ ++A+ P LHPGD+RV+RAV+VP L H+ D V+F
Sbjct: 857 KLAALPEIFVQIHHPDTGKCEVIEGVCILARNPSLHPGDIRVVRAVNVPQLSHLKDVVVF 916
Query: 625 PAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQF-QPTAYTPAPEKILARDVTIEDVE 683
P G+R + CSG D DG+ Y V WD D +P F +P YT + L +DVT+ +
Sbjct: 917 PQTGDRDIPSTCSGGDLDGDDYLVIWDQDLVPEDWFRKPMKYTSDKAQDLDQDVTVNHIT 976
Query: 684 EYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSR 743
+F Y+ ND L I +AH+ +A D +C L +L S D++KTG A +
Sbjct: 977 SFFVLYMKNDFLPRIAHAHLAWADRLEDGVNEEKCIRLAQLHSDAVDYNKTGKPANMARS 1036
Query: 744 LRVKIYPDFMEKQDK---TWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDM 800
L+ K++P FMEK+ K Y+S I+G LY V I F M F + +
Sbjct: 1037 LQPKVWPHFMEKKHKPKEMIYKSNKILGQLYDAVERI--------DFVPSLEMPFDERIL 1088
Query: 801 EVN-GFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIM---EMAKSFDKKR 856
+ G + +QF + +YD + +M + I TE E+ S ++ M+K +
Sbjct: 1089 TCSLGVSDDLVQF-ARDLKADYDAAMHRIMAQHEITTEFEVWSTFVLSHSNMSKDYKFHE 1147
Query: 857 DLEAISFSVRSLRKE 871
+L IS S+R + ++
Sbjct: 1148 ELGLISSSLRDMYRK 1162
>gi|261204627|ref|XP_002629527.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis SLH14081]
gi|239587312|gb|EEQ69955.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis SLH14081]
Length = 1633
Score = 320 bits (821), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 227/742 (30%), Positives = 363/742 (48%), Gaps = 114/742 (15%)
Query: 220 KHALEMLFHL---RECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPS 276
K A E+L H+ + YDP+ + K ++G+ P G Y+ VTPS
Sbjct: 601 KKAKELLEHVAMNKTIYYDPMGIFNIPFPKGATNGRIP--------GHCCYIRSADVTPS 652
Query: 277 KVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDED-LGKLYSTVLSPQISSTNGERRTRI 335
+ + P + SNRV R + + D FLR+ F DE +GK+Y +S N + ++
Sbjct: 653 TICYDIPSVDTSNRVFRYHREHADRFLRVRFCDEKYIGKIYPN------NSGNSQCMEKV 706
Query: 336 YERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKN 395
Y RVL TL++GI IGD+++E LAF NSQ RE+ + FAS P LTAA+IR +MGD I+
Sbjct: 707 YARVLRTLQHGITIGDRRYEFLAFGNSQLREHGAYFFASLPHLTAANIRAQMGDLNNIRV 766
Query: 396 VTKYAARLGQSFASSREALH----------VDSN-------IGKISAELAETVAKKCGYA 438
V KYAARLGQ F+++R ++ N +G++S L + + G
Sbjct: 767 VAKYAARLGQCFSTTRAVTSCPVQIKKIDDIERNGYVFSDGVGRLSHFLTQMIQSDLGIK 826
Query: 439 IYT---PSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLDILANSKYQREG 482
+ PS FQ R GG K V +R + FK+ + L+I+ S +
Sbjct: 827 TPSGEPPSVFQFRLGGCKGILAVSPEARQREVHIRRSQFKFPASHNGLEIIRYSHFSYAT 886
Query: 483 VARLRL---------DNVFERKQREVVARLDAILTDSSKVQEALE-LMSSAENTNVLKEL 532
+ R + D VF K ++A L+ +TD K L+ + + T VL ++
Sbjct: 887 LNRQLILILSALGTPDEVFIAKLSMMLANLEQAMTDEDKAVSLLQKYVDPNQMTLVLADM 946
Query: 533 LNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL-------- 584
+ G++ EPF+S + + + + L+ +A+I I G ++GC+DE TL
Sbjct: 947 IRDGFQGSREPFVSSLLELWRTWQIKYLKEKAKIAIDEGAFLLGCIDETKTLKGYFRSAR 1006
Query: 585 ---------------------------EYG--QGLMVVAKKPCLHPGDMRVLRAVDVPAL 615
+Y +GL ++A+ P LHPGD+RV++AVD PAL
Sbjct: 1007 PKANSTYQERVDCLPEIFVQVWRHSEGKYAVIEGLCILARNPSLHPGDIRVVKAVDAPAL 1066
Query: 616 HHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPE-KILA 674
HH+ D V+ P G+R N CSG D DG+ Y V WD +P F AP+ ++L
Sbjct: 1067 HHLRDVVVLPQTGDRDLANICSGGDLDGDDYIVIWDKSMLPTDWFHEPMDNCAPKPEVLD 1126
Query: 675 RDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKT 734
RDVT++D+ +++ +Y+ N L I AH+ A + D +C L L S D++K+
Sbjct: 1127 RDVTVDDITKFYVNYMQNCCLSQIARAHMALADFQEDGVKDEKCIQLAALHSAAVDYNKS 1186
Query: 735 GVAATIPSRLRVKIYPDFMEKQDKT---WYESQHIVGNLYREVNGIAPSTTTIKSFAKEG 791
G+ + L+ K++P FME++ K Y S I+G LY + I + I+ + E
Sbjct: 1187 GIPVRMTRNLKPKVWPHFMERKMKNKNAEYRSAKILGQLYDMASHID-IRSKIQFLSPEE 1245
Query: 792 AMQF----YDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIM- 846
QF + +EV+ K +++ D + +YD + +M + I+TE E+ S ++
Sbjct: 1246 RPQFDKRILKSGIEVDE-KLLSVATD---LKMQYDTDMRRIMARHEIETELEVWSTFVLS 1301
Query: 847 --EMAKSFDKKRDLEAISFSVR 866
EM+ + D+ IS ++R
Sbjct: 1302 HSEMSNDYKFHEDIGRISSALR 1323
>gi|326471540|gb|EGD95549.1| RNA-directed RNA polymerase [Trichophyton tonsurans CBS 112818]
Length = 1605
Score = 320 bits (820), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 228/759 (30%), Positives = 366/759 (48%), Gaps = 114/759 (15%)
Query: 198 LVQFTLLPGFVFSCNSDLNQDGKHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSP 257
L ++T+ F S +DGK LE + + DP+ Q+ V++ + P
Sbjct: 554 LSEYTIDKDFAKKLESLGERDGKDLLEYVAQEKTVYLDPMEIFNIQFFSGVTNRRIPKY- 612
Query: 258 AVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYS 317
Y+ VTPS +YF P + SNRV+R Y + D FLR+ F DE
Sbjct: 613 -------CCYMRSATVTPSTIYFNTPTVDTSNRVIRHYIEYADKFLRVRFTDEKY----- 660
Query: 318 TVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE 377
+I+ST ++ RV T+ NGI +GD+ +E LAF NSQ RE+ + FAS P
Sbjct: 661 ---EGRINSTYNNCMDEVFTRVKRTMTNGITVGDRHYEFLAFGNSQFREHGAYFFASLPN 717
Query: 378 LTAADIRERMGDFREIKNVTKYAARLGQSFASS----------REALHVDSN-------I 420
LTAA+IR MG F +IK V K+AARLG+ F+++ RE V+ N +
Sbjct: 718 LTAANIRAWMGHFSDIKIVAKHAARLGRCFSTTRAVTGCPVTVREIDEVERNGYIFSDGV 777
Query: 421 GKISAELAETVAKKCGYAIYT---PSAFQIRYGGYK-------------VTLRNNMFKYK 464
G+IS LA+ + + + PS FQ R GG K V +R + +K+
Sbjct: 778 GRISKFLAQMIMTEFKLQTPSEEPPSVFQFRLGGCKGILTVSPEAQRREVHIRKSQYKFA 837
Query: 465 SESTSLDILANSKYQREGVARLRL---------DNVFERKQREVVARLDAILTDSSKVQE 515
+ L+I+ S++ + R + D +F +K R ++ ++ +T +K
Sbjct: 838 AIHNGLEIIRWSQFAAAHLNRQLIVVLSALGVSDEIFIQKLRLMLEDMEQAMTSETKAMS 897
Query: 516 ALE-LMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAM 574
L+ + + T +L ++++ G++ +PF+ + + + A + L+ +A++FI G +
Sbjct: 898 MLQKRVDPNQMTLILAQMVHDGFQGSCDPFVKSLLELWRAWQIKYLKEKAKVFIDQGACL 957
Query: 575 MGCLDEKGT-------------------LEY-------------------GQGLMVVAKK 596
GCLDE T LEY +G ++A+
Sbjct: 958 FGCLDETATLKGYHEKKRPSIEATYEERLEYLPEIFVQVFDNEEEKKYRVIEGPCILARN 1017
Query: 597 PCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIP 656
P LHPGD+RV+RAVDVPALHH+ D ++FP G+R + CSG D DG+ Y V WD D +P
Sbjct: 1018 PSLHPGDIRVVRAVDVPALHHLKDVIVFPQTGDRDVPSTCSGGDLDGDDYIVIWDQDLVP 1077
Query: 657 -PLQF--QPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKA 713
P + +P YT + + L RDVT+ D+ +F Y+ ND L I +AH+ +A D
Sbjct: 1078 LPKDWFREPMDYTASNAQSLTRDVTVNDITSFFVTYMKNDRLPQIAHAHLAFADYLEDGV 1137
Query: 714 MSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDK---TWYESQHIVGNL 770
RC L +L S D++K+G+ A + L + +P FMEK+ K Y+S+ I+G +
Sbjct: 1138 NDERCIQLAQLHSAAVDYNKSGIPANMTRDLVPRKWPHFMEKKYKPKEAQYQSKKILGQI 1197
Query: 771 YREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMD 830
Y V + F + + + D+ V+ +A + K + YD + +M
Sbjct: 1198 YDIVERVEFRPKLEAPFDE----RILNCDISVSEDMVLAAK----KLKALYDADMRRIMA 1249
Query: 831 YYGIKTEAEMLSRCIM---EMAKSFDKKRDLEAISFSVR 866
+ IKTE E+ S ++ M+K + +L IS ++R
Sbjct: 1250 QHEIKTEFEVWSTFVLGHANMSKDYKFHEELGQISSALR 1288
>gi|302658845|ref|XP_003021121.1| hypothetical protein TRV_04770 [Trichophyton verrucosum HKI 0517]
gi|291185002|gb|EFE40503.1| hypothetical protein TRV_04770 [Trichophyton verrucosum HKI 0517]
Length = 1587
Score = 320 bits (819), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 228/759 (30%), Positives = 363/759 (47%), Gaps = 114/759 (15%)
Query: 198 LVQFTLLPGFVFSCNSDLNQDGKHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSP 257
L ++T+ F S +DGK LE + + +DP+ Q+ V++ + P
Sbjct: 535 LSEYTIDKDFAKKLESLGERDGKDLLEYVAQEKTVYHDPMEIFNIQFFSGVTNRRIPKY- 593
Query: 258 AVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYS 317
Y+ VTPS +YF P + SNRV+R Y + D FLR+ F DE
Sbjct: 594 -------CCYMRSATVTPSTIYFNTPTVDTSNRVIRHYIEYADRFLRVRFTDEKY----- 641
Query: 318 TVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE 377
+I+ST ++ RV T+ NGI +GD+ +E LAF NSQ RE+ + FAS P
Sbjct: 642 ---EGRINSTYNNCMDEVFTRVKRTMTNGITVGDRHYEFLAFGNSQFREHGAYFFASLPN 698
Query: 378 LTAADIRERMGDFREIKNVTKYAARLGQSFASS----------REALHVDSN-------I 420
LTAA+IR MG F +IK K+AARLGQ F+++ RE V+ N +
Sbjct: 699 LTAANIRAWMGHFSDIKIAAKHAARLGQCFSTTRAVTGCPVTVREIDEVERNGYIFSDGV 758
Query: 421 GKISAELAETVAKKCGYAIYT---PSAFQIRYGGYK-------------VTLRNNMFKYK 464
G+IS LA+ + + + PS FQ R GG K V +R + +K+
Sbjct: 759 GRISKFLAQMIMTEFKLQTPSEEPPSVFQFRLGGCKGILTVSPEAQRREVHIRKSQYKFA 818
Query: 465 SESTSLDILANSKYQREGVARLRL---------DNVFERKQREVVARLDAILTDSSKVQE 515
+ L+I+ S++ + R + DN+F K R ++ L+ +T +K
Sbjct: 819 AIHNGLEIIRWSQFAAAHLNRQLIVVLSALGVSDNIFIEKLRLMLEDLEQAMTSETKAMS 878
Query: 516 ALE-LMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAM 574
L+ + + T +L ++++ G++ +PF+ + + + A + L+ +A++FI G +
Sbjct: 879 MLQKRVDPNQMTLLLAQMVHDGFQGSCDPFVKSLLELWRAWQIKYLKEKAKVFIDQGACL 938
Query: 575 MGCLDEKGT-------------------LEY-------------------GQGLMVVAKK 596
GCLDE T LEY +G ++A+
Sbjct: 939 FGCLDETATLKGYYEKKRPSIEATYEERLEYLPEIFVQVFDNEEEKKYRVIEGPCILARN 998
Query: 597 PCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIP 656
P LHPGD+RV+RAV+VPALHH+ D ++FP G+R + CSG D DG+ Y V WD D +P
Sbjct: 999 PSLHPGDIRVVRAVNVPALHHLKDVIVFPQTGDRDVPSTCSGGDLDGDDYIVIWDQDLVP 1058
Query: 657 PLQ---FQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKA 713
+ +P YT + + L RDVT+ D+ +F Y+ ND L I +AH+ +A D
Sbjct: 1059 LSKDWFREPMDYTASNAQSLTRDVTVNDITSFFVTYMKNDRLPQIAHAHLAFADYLEDGV 1118
Query: 714 MSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDK---TWYESQHIVGNL 770
RC L +L S D++K+G+ A + L + +P FMEK+ K Y+S+ I+G +
Sbjct: 1119 NDERCIQLAQLHSAAVDYNKSGIPANMTRDLVPRKWPHFMEKKYKPKEAQYQSKKILGQI 1178
Query: 771 YREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMD 830
Y V + F + + + D+ V+ M K + YD + +M
Sbjct: 1179 YDIVERVEFRPKLEAPFDE----RILNCDISVSE----EMVLAAKKLKGLYDADMRRIMA 1230
Query: 831 YYGIKTEAEMLSRCIM---EMAKSFDKKRDLEAISFSVR 866
+ IKTE E+ S ++ M+K + +L IS ++R
Sbjct: 1231 QHEIKTEFEVWSTFVLGHANMSKDYKFHEELGQISSALR 1269
>gi|119493033|ref|XP_001263772.1| RNA-directed RNA polymerase (Sad-1), putative [Neosartorya fischeri
NRRL 181]
gi|119411932|gb|EAW21875.1| RNA-directed RNA polymerase (Sad-1), putative [Neosartorya fischeri
NRRL 181]
Length = 1599
Score = 319 bits (818), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 237/795 (29%), Positives = 381/795 (47%), Gaps = 125/795 (15%)
Query: 168 IGQSSAICLELPSRALIPKALKDFFHYKESLVQFTLLPGFVFSCNSDLNQDGKHALEMLF 227
+G S + L P R + L + L +FT+ F L A+++L
Sbjct: 578 LGDESYVHLPFPVRYQLEVCLSHNY-----LSEFTMTREFAVKL---LELGESEAVKLLE 629
Query: 228 HL---RECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPE 284
H+ +E +DP+ ++ K + + P+ Y+ +TP+ +Y+ P
Sbjct: 630 HVAIKKEVYHDPMKIFDLKFAKGSTRAKIPSY--------CCYMRSARITPTTIYYNTPS 681
Query: 285 ISLSNRVVRSYPDEIDNFLRLSFVDEDL-GKLYSTVLSPQISSTNGERRTRIYERVLSTL 343
+ +SNRV+R Y + D FLR+ F DE L G++ STV +T E ++ R+ L
Sbjct: 682 VDISNRVIRYYIEYADRFLRVRFTDEKLLGRINSTV-----DNTMDE----VFTRIKRAL 732
Query: 344 RNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARL 403
NGIVIGD+++E LAF NSQ RE+ + FA P LTAA+IR MG F +I+NV K+AARL
Sbjct: 733 ANGIVIGDRRYEFLAFGNSQFREHGAYFFAPLPNLTAANIRAWMGTFNDIRNVAKHAARL 792
Query: 404 GQSFASSR-----------------EALHVDSNIGKISAELAETVAKKCGYAIYT---PS 443
GQ F+++R +G+IS LA+ A + + PS
Sbjct: 793 GQCFSTTRAIAGCPVQIRLIDDVVQNGYTFSDGVGRISKFLAQMAASELKIKTPSDDPPS 852
Query: 444 AFQIRYGGYK-------------VTLRNNMFKYKSESTSLDILANSKYQREGVARLRL-- 488
AFQ R GG K V +R + +K+ + L+I+ S+Y + R +
Sbjct: 853 AFQFRLGGCKGMLTVSPEAQRQEVHIRKSQYKFAAVHNGLEIIRWSQYSMATLNRQLIIV 912
Query: 489 -------DNVFERKQREVVARL-DAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPD 540
D VF K R ++ L +A+ +DS + + + + T V+ +++ G++
Sbjct: 913 LSSLGIQDRVFHDKLRAMLQSLNEAMESDSQALCWLKKYVDPNQMTLVVSQMVLDGFRSS 972
Query: 541 AEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL---------------- 584
EPF++ + + + A +L L+ +A+I I+ G ++GC+DE G L
Sbjct: 973 REPFVTSIMRLWKAWHLKYLKEKAKIVIEKGANLLGCMDETGILRGYSERVPAKGASDEE 1032
Query: 585 --------------------EYGQGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLF 624
E +G+ ++A+ P LHPGD+RV+RAV+VP L H+ D V+F
Sbjct: 1033 KLAALPEIFVQIHRPDTGKCEVIEGVCILARNPSLHPGDIRVVRAVNVPQLSHLKDVVVF 1092
Query: 625 PAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPT-AYTPAPEKILARDVTIEDVE 683
P G+R + CSG D DG+ Y V WD D +P F+ YT + L +DVT+ +
Sbjct: 1093 PQTGDRDIPSMCSGGDLDGDDYLVIWDQDLVPEDWFRKAMKYTSDKAQDLDQDVTVNHIT 1152
Query: 684 EYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSR 743
+F Y+ ND L I +AH+ +A D +C L +L S D++KTG A +
Sbjct: 1153 SFFVLYMKNDFLPRIAHAHLAWADRLEDGVNEEKCIRLAQLHSDAVDYNKTGKPANMTRS 1212
Query: 744 LRVKIYPDFMEKQDKT---WYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDM 800
L+ K++P FMEK+ K Y+S I+G LY V I F M F + +
Sbjct: 1213 LQPKVWPHFMEKKHKPKERIYKSNKILGQLYDAVERI--------DFVPSLEMPFDERIL 1264
Query: 801 EVN-GFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIM---EMAKSFDKKR 856
+ G + +QF + +YD + +M + IKTE E+ S ++ M+K +
Sbjct: 1265 TCSLGVNDDLVQF-ARDLKADYDAAMHRIMAQHEIKTEFEVWSTFVLSHSNMSKDYKFHE 1323
Query: 857 DLEAISFSVRSLRKE 871
+L IS S+R + ++
Sbjct: 1324 ELGLISSSLRDMYRK 1338
>gi|115402503|ref|XP_001217328.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114189174|gb|EAU30874.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 1309
Score = 317 bits (811), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 224/730 (30%), Positives = 348/730 (47%), Gaps = 111/730 (15%)
Query: 223 LEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCG 282
LE + + YDP+ ++ K ++ + P Y+ VTPS VY+
Sbjct: 411 LEHVATQKRVYYDPMKIFDLKFIKGATNAKIPPY--------CCYIRSARVTPSTVYYET 462
Query: 283 PEISLSNRVVRSYPDEIDNFLRLSFVDEDL-GKLYSTVLSPQISSTNGERRTRIYERVLS 341
P + +SNR++R Y + D FLR+ F DE L G++YST +T E ++ RV
Sbjct: 463 PSMDMSNRIIRHYIEYADRFLRVRFTDEKLLGRIYSTT-----DNTMDE----VFTRVKR 513
Query: 342 TLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAA 401
L NGIVIGD+++E LAF NSQ RE+ + FA P LTAA+IR MG F +I+NV K+AA
Sbjct: 514 ALANGIVIGDRRYEFLAFGNSQFREHGAYFFAPLPNLTAANIRAWMGHFDDIRNVAKHAA 573
Query: 402 RLGQSFASS-----------------REALHVDSNIGKISAELAETVAKKCGYAIYT--- 441
RLGQ F+++ R +G+IS LA+ V + +
Sbjct: 574 RLGQCFSTTRAIFGCPIKVQEIDDIVRNGYRFSDGVGRISKFLAQMVMSELKIKTPSGEP 633
Query: 442 PSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLDILANSKYQREGVARLRL 488
PS FQ R GG K V +R + K+ + L+I+ S++ + R +
Sbjct: 634 PSVFQFRLGGCKGILTVSPQAQRQEVHIRKSQAKFTATHNGLEIIRWSQFTAASLNRQLI 693
Query: 489 ---------DNVFERKQREVVARLDAILTDSSKVQEAL-ELMSSAENTNVLKELLNCGYK 538
D +F K R V+ L+ L + +K L + + T + +++ G++
Sbjct: 694 IVLSTLGIRDRIFHEKLRAVLWGLNEALKNDAKAIHLLRRYVDPNQRTLTISQMVVDGFR 753
Query: 539 PDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL-------------- 584
EPF + + + A +L L+ +A+I I G + GC+DE GTL
Sbjct: 754 RTEEPFATSVLTLWRAWHLKYLKDKAKITIDKGACVFGCMDETGTLKGYFHEKIPDRDAP 813
Query: 585 ------------------------EYGQGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVD 620
E QG+ ++A+ P LH GD+RV++AVDVPAL H+ D
Sbjct: 814 FEQRFAALPEIFLQIPNQDKGGKYEVIQGMCILARNPSLHSGDIRVVKAVDVPALRHLQD 873
Query: 621 CVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTA-YTPAPEKILARDVTI 679
V+ P G+R + CSG D DG+ Y V WD D IP F+P YT + L RDVT+
Sbjct: 874 VVVLPQTGDRDIASMCSGGDLDGDDYVVIWDQDLIPKDWFRPPMNYTTNKARDLDRDVTV 933
Query: 680 EDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAAT 739
+++ +F Y+ ND L I +AH+ +A + +C L +L S D++K G A
Sbjct: 934 DEITSFFVTYMKNDCLPTIAHAHLAWADRLDNGVDEEKCIRLAQLHSDAVDYNKNGTPAH 993
Query: 740 IPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTD 799
+ L K++P FMEK+ + Y+S I+G LY V + + S K + ++
Sbjct: 994 MTRNLEPKLWPHFMEKKTEKVYKSGKILGQLYDAVERV----NFVPSLEKPFDRRILNSR 1049
Query: 800 MEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIM---EMAKSFDKKR 856
+ V E QF + +YD L +M + IKTE E+ S ++ M+K +
Sbjct: 1050 IPV---AEDLYQF-ARDMKKDYDIALRRIMAQHEIKTEFEVWSTFVLSHANMSKDYKFHE 1105
Query: 857 DLEAISFSVR 866
++ +S S+R
Sbjct: 1106 EIGMLSSSLR 1115
>gi|327305981|ref|XP_003237682.1| RNA-directed RNA polymerase [Trichophyton rubrum CBS 118892]
gi|326460680|gb|EGD86133.1| RNA-directed RNA polymerase [Trichophyton rubrum CBS 118892]
Length = 1604
Score = 317 bits (811), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 226/759 (29%), Positives = 363/759 (47%), Gaps = 114/759 (15%)
Query: 198 LVQFTLLPGFVFSCNSDLNQDGKHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSP 257
L ++T+ F S +DGK LE + + +DP+ Q+ V++ + P
Sbjct: 553 LSEYTIDKDFAKKLESLGERDGKDLLEYVAQEKTVYHDPMEIFNIQFFSGVTNRRIPKY- 611
Query: 258 AVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYS 317
Y+ VTPS +YF P + SNRV+R Y + D FLR+ F DE
Sbjct: 612 -------CCYMRSATVTPSTIYFNTPTVDTSNRVIRHYIEYADRFLRVRFTDEKY----- 659
Query: 318 TVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE 377
+I+ST ++ RV T+ NGI +GD+ +E LAF NSQ RE+ + FAS P
Sbjct: 660 ---EGRINSTYNNCMDEVFTRVKRTMTNGITVGDRHYEFLAFGNSQFREHGAYFFASLPN 716
Query: 378 LTAADIRERMGDFREIKNVTKYAARLGQSFASSREAL----------HVDSN-------I 420
LTAA+IR MG F +IK V K+AARLGQ F+++R V+ N +
Sbjct: 717 LTAANIRAWMGHFSDIKIVAKHAARLGQCFSTTRAVTGCPVTVRTIDEVERNGYIFSDGV 776
Query: 421 GKISAELAETVAKKCGYAIYT---PSAFQIRYGGYK-------------VTLRNNMFKYK 464
G+IS LA+ + + + PS FQ R GG K V +R + +K+
Sbjct: 777 GRISKFLAQMIMTEFKLQTPSEEPPSVFQFRLGGCKGILTVSPEAQRREVHIRKSQYKFA 836
Query: 465 SESTSLDILANSKYQREGVARLRL---------DNVFERKQREVVARLDAILTDSSKVQE 515
+ L+I+ S++ + R + D +F +K R ++ ++ +T +K
Sbjct: 837 AIHNGLEIIRWSQFAAAHLNRQLIVVLSALGVSDEIFIQKLRLMLEDMEQAMTSETKAMS 896
Query: 516 ALELMSSAENTNVLK-ELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAM 574
L+ +L ++++ G++ +PF+ + + + A + L+ +A++FI G +
Sbjct: 897 MLQKRVDPNQMTLLPAQMVHDGFQGSCDPFVKSLLELWRAWQIKYLKEKAKVFIDQGACL 956
Query: 575 MGCLDEKGT-------------------LEY-------------------GQGLMVVAKK 596
GCLDE T LEY +G ++A+
Sbjct: 957 FGCLDETATLKGYYEKKRPSIEATYEERLEYLPEIFVQVFDNEEEKKYRVIEGPCILARN 1016
Query: 597 PCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIP 656
P LHPGD+RV+RAV+VPALHH+ D ++FP G+R + CSG D DG+ Y V WD D +P
Sbjct: 1017 PSLHPGDIRVVRAVNVPALHHLKDVIVFPQTGDRDVPSTCSGGDLDGDDYIVIWDQDLVP 1076
Query: 657 -PLQF--QPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKA 713
P + +P YT + + L RDVT+ D+ +F Y+ ND L I +AH+ +A D
Sbjct: 1077 LPKDWFREPMDYTASNAQSLNRDVTVNDITSFFVTYMKNDRLPQIAHAHLAFADYLEDGV 1136
Query: 714 MSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDK---TWYESQHIVGNL 770
RC L +L S D++K+G+ A + L + +P FMEK+ K Y+S+ I+G +
Sbjct: 1137 NDERCIQLAQLHSAAVDYNKSGIPANMTRDLVPRRWPHFMEKKYKPKEAQYQSKKILGQI 1196
Query: 771 YREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMD 830
Y V + F + + + D+ V+ +A + K + YD + +M
Sbjct: 1197 YDIVERVEFRPKLEAPFDE----RILNCDISVSQDMVLAAK----KLKALYDADMRRIMA 1248
Query: 831 YYGIKTEAEMLSRCIM---EMAKSFDKKRDLEAISFSVR 866
+ IKTE E+ S ++ M+K + +L IS ++R
Sbjct: 1249 QHEIKTEFEVWSTFVLGHANMSKDYKFHEELGQISSALR 1287
>gi|391863075|gb|EIT72389.1| RNA-directed RNA polymerase QDE-1 [Aspergillus oryzae 3.042]
Length = 1458
Score = 316 bits (810), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 231/766 (30%), Positives = 363/766 (47%), Gaps = 120/766 (15%)
Query: 198 LVQFTLLPGFVFSCNSDLNQDGKHALEMLFHL---RECCYDPVSWLREQYRKHVSSGQFP 254
L +FT+ F S+L + A+++L H+ ++ YDP+ ++ K V+ + P
Sbjct: 458 LSEFTMTREFAVKL-SELGE--TQAVKLLEHVSAKKQVYYDPMKIFDLKFIKGVTQAKIP 514
Query: 255 TSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGK 314
Y++ +TPS +Y+ P + +SNRV+R + + D FLR+ F DE L
Sbjct: 515 PY--------CCYMHSARITPSTIYYNTPTVDISNRVIRRFIEHADRFLRVRFTDEKLLG 566
Query: 315 LYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFAS 374
+I+ST I+ R+ L NGIVIGD+++E LAF NSQ RE+ + FA
Sbjct: 567 --------RINSTTDSTMDEIFTRIKRALTNGIVIGDRRYEFLAFGNSQFREHGAYFFAP 618
Query: 375 RPELTAADIRERMGDFREIKNVTKYAARLGQSFASS-----------------REALHVD 417
P LTAA+IR MG F I+NV K+AARLGQ F+++ R +
Sbjct: 619 LPNLTAANIRAWMGHFNSIRNVAKHAARLGQCFSTTRAIAGCPVDVVKIEDVERNGYNFS 678
Query: 418 SNIGKISAELAETVAKKCGYAIYT---PSAFQIRYGGYK-------------VTLRNNMF 461
+G+IS LA+ + T PSAFQ R GG K V +R + F
Sbjct: 679 DGVGRISRFLAQMSMSELKIKTPTGEPPSAFQFRLGGCKGMLAVSSEAQRQEVHIRKSQF 738
Query: 462 KYKSESTSLDILANSKYQREGVARLRL---------DNVFERKQREVVARLD-AILTDSS 511
K+ + L+I+ S++ + R + D VF K ++ LD A+ +D
Sbjct: 739 KFAAIHNGLEIVRWSQFSMATLNRQLIIVLSTLGIPDQVFHAKLHTMLQGLDQALESDPQ 798
Query: 512 KVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNG 571
+ + + + T + +++ G++ EPFL+ + + A +L L+ +ARI + G
Sbjct: 799 AIYWLKKYVDPNQMTLTISQMVLDGFRRSKEPFLTSVLTLWRAWHLKYLKEKARIAVDQG 858
Query: 572 QAMMGCLDEKGTL--------------------------------------EYGQGLMVV 593
++GC+DE G L E +G+ ++
Sbjct: 859 ACLLGCMDETGLLQGYFHDKVPGNDASVEEKTAALPEIFVQVSRPEADKKSEVIEGVCIL 918
Query: 594 AKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHD 653
A+ P LHPGD+RV+RAV+VP L H+ D V+ P G+R + CSG D DG+ Y V WD D
Sbjct: 919 ARNPSLHPGDIRVVRAVNVPQLRHLQDVVVLPQTGDRDIASMCSGGDLDGDDYIVIWDQD 978
Query: 654 RIPPLQF-QPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDK 712
+P F +P YT + L RDVT+ D+ +F Y+ ND L I +AH+ A D
Sbjct: 979 LLPKDWFREPMKYTSNKAQDLDRDVTVNDITSFFVTYMKNDFLPRIAHAHLALADFLEDG 1038
Query: 713 AMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKT---WYESQHIVGN 769
+C L +L S D++KTG+ A + L + +P FMEK +K Y S I+G
Sbjct: 1039 VNEEKCIRLAQLHSDAVDYNKTGIPAILTRNLEPRKWPHFMEKFNKPKDRIYHSNKILGQ 1098
Query: 770 LYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEV-NGFKEVAMQFDGFKYRTEYDNKLGNL 828
LY V I + F K + + ++EV + A G +YD+ + +
Sbjct: 1099 LYDAVERIDFVPSLEMPFDK----RLLNCEIEVPDDLLTFAKNLKG-----QYDDAMRRI 1149
Query: 829 MDYYGIKTEAEMLSRCIMEMA---KSFDKKRDLEAISFSVRSLRKE 871
M + IKTE E+ S ++ A K + ++ AIS ++R K+
Sbjct: 1150 MAQHEIKTEFEIWSTFVLGHANTSKDYKFHEEIGAISATLRDTFKK 1195
>gi|83773394|dbj|BAE63521.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1458
Score = 316 bits (810), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 231/766 (30%), Positives = 363/766 (47%), Gaps = 120/766 (15%)
Query: 198 LVQFTLLPGFVFSCNSDLNQDGKHALEMLFHL---RECCYDPVSWLREQYRKHVSSGQFP 254
L +FT+ F S+L + A+++L H+ ++ YDP+ ++ K V+ + P
Sbjct: 458 LSEFTMTREFAVKL-SELGE--TQAVKLLEHVSAKKQVYYDPMKIFDLKFIKGVTQAKIP 514
Query: 255 TSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGK 314
Y++ +TPS +Y+ P + +SNRV+R + + D FLR+ F DE L
Sbjct: 515 PY--------CCYMHSARITPSTIYYNTPTVDISNRVIRRFIEHADRFLRVRFTDEKLLG 566
Query: 315 LYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFAS 374
+I+ST I+ R+ L NGIVIGD+++E LAF NSQ RE+ + FA
Sbjct: 567 --------RINSTTDSTMDEIFTRIKRALTNGIVIGDRRYEFLAFGNSQFREHGAYFFAP 618
Query: 375 RPELTAADIRERMGDFREIKNVTKYAARLGQSFASS-----------------REALHVD 417
P LTAA+IR MG F I+NV K+AARLGQ F+++ R +
Sbjct: 619 LPNLTAANIRAWMGHFNSIRNVAKHAARLGQCFSTTRAIAGCPVDVVKIEDVERNGYNFS 678
Query: 418 SNIGKISAELAETVAKKCGYAIYT---PSAFQIRYGGYK-------------VTLRNNMF 461
+G+IS LA+ + T PSAFQ R GG K V +R + F
Sbjct: 679 DGVGRISRFLAQMSMSELKIKTPTGEPPSAFQFRLGGCKGMLAVSSEAQRQEVHIRKSQF 738
Query: 462 KYKSESTSLDILANSKYQREGVARLRL---------DNVFERKQREVVARLD-AILTDSS 511
K+ + L+I+ S++ + R + D VF K ++ LD A+ +D
Sbjct: 739 KFAAIHNGLEIVRWSQFSMATLNRQLIIVLSTLGIPDQVFHAKLHTMLQGLDQALESDPQ 798
Query: 512 KVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNG 571
+ + + + T + +++ G++ EPFL+ + + A +L L+ +ARI + G
Sbjct: 799 AIYWLKKYVDPNQMTLTISQMVLDGFRRSKEPFLTSVLTLWRAWHLKYLKEKARIAVDQG 858
Query: 572 QAMMGCLDEKGTL--------------------------------------EYGQGLMVV 593
++GC+DE G L E +G+ ++
Sbjct: 859 ACLLGCMDETGLLQGYFHDKVPGNDASVEEKTAALPEIFVQVSRPEADKKSEVIEGVCIL 918
Query: 594 AKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHD 653
A+ P LHPGD+RV+RAV+VP L H+ D V+ P G+R + CSG D DG+ Y V WD D
Sbjct: 919 ARNPSLHPGDIRVVRAVNVPQLRHLQDVVVLPQTGDRDIASMCSGGDLDGDDYIVIWDQD 978
Query: 654 RIPPLQF-QPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDK 712
+P F +P YT + L RDVT+ D+ +F Y+ ND L I +AH+ A D
Sbjct: 979 LLPKDWFREPMKYTSNKAQDLDRDVTVNDITSFFVTYMKNDFLPRIAHAHLALADFLEDG 1038
Query: 713 AMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKT---WYESQHIVGN 769
+C L +L S D++KTG+ A + L + +P FMEK +K Y S I+G
Sbjct: 1039 VNEEKCIRLAQLHSDAVDYNKTGIPAILTRNLEPRKWPHFMEKFNKPKDRIYHSNKILGQ 1098
Query: 770 LYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEV-NGFKEVAMQFDGFKYRTEYDNKLGNL 828
LY V I + F K + + ++EV + A G +YD+ + +
Sbjct: 1099 LYDAVERIDFVPSLEMPFDK----RLLNCEIEVPDDLLTFAKNLKG-----QYDDAMRRI 1149
Query: 829 MDYYGIKTEAEMLSRCIMEMA---KSFDKKRDLEAISFSVRSLRKE 871
M + IKTE E+ S ++ A K + ++ AIS ++R K+
Sbjct: 1150 MAQHEIKTEFEIWSTFVLGHANTSKDYKFHEEIGAISATLRDTFKK 1195
>gi|238505489|ref|XP_002383969.1| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus flavus
NRRL3357]
gi|220690083|gb|EED46433.1| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus flavus
NRRL3357]
Length = 1353
Score = 316 bits (810), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 231/766 (30%), Positives = 363/766 (47%), Gaps = 120/766 (15%)
Query: 198 LVQFTLLPGFVFSCNSDLNQDGKHALEMLFHL---RECCYDPVSWLREQYRKHVSSGQFP 254
L +FT+ F S+L + A+++L H+ ++ YDP+ ++ K V+ + P
Sbjct: 353 LSEFTMTREFAVKL-SELGE--TQAVKLLEHVSAKKQVYYDPMKIFDLKFIKGVTQAKIP 409
Query: 255 TSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGK 314
Y++ +TPS +Y+ P + +SNRV+R + + D FLR+ F DE L
Sbjct: 410 PY--------CCYMHSARITPSTIYYNTPTVDISNRVIRRFIEHADRFLRVRFTDEKLLG 461
Query: 315 LYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFAS 374
+I+ST I+ R+ L NGIVIGD+++E LAF NSQ RE+ + FA
Sbjct: 462 --------RINSTTDSTMDEIFTRIKRALTNGIVIGDRRYEFLAFGNSQFREHGAYFFAP 513
Query: 375 RPELTAADIRERMGDFREIKNVTKYAARLGQSFASS-----------------REALHVD 417
P LTAA+IR MG F I+NV K+AARLGQ F+++ R +
Sbjct: 514 LPNLTAANIRAWMGHFNSIRNVAKHAARLGQCFSTTRAIAGCPVDVVKIEDVERNGYNFS 573
Query: 418 SNIGKISAELAETVAKKCGYAIYT---PSAFQIRYGGYK-------------VTLRNNMF 461
+G+IS LA+ + T PSAFQ R GG K V +R + F
Sbjct: 574 DGVGRISRFLAQMSMSELKIKTPTGEPPSAFQFRLGGCKGMLAVSSEAQRQEVHIRKSQF 633
Query: 462 KYKSESTSLDILANSKYQREGVARLRL---------DNVFERKQREVVARLD-AILTDSS 511
K+ + L+I+ S++ + R + D VF K ++ LD A+ +D
Sbjct: 634 KFAAIHNGLEIVRWSQFSMATLNRQLIIVLSTLGIPDQVFHAKLHTMLQGLDQALESDPQ 693
Query: 512 KVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNG 571
+ + + + T + +++ G++ EPFL+ + + A +L L+ +ARI + G
Sbjct: 694 AIYWLKKYVDPNQMTLTISQMVLDGFRRSKEPFLTSVLTLWRAWHLKYLKEKARIAVDQG 753
Query: 572 QAMMGCLDEKGTL--------------------------------------EYGQGLMVV 593
++GC+DE G L E +G+ ++
Sbjct: 754 ACLLGCMDETGLLQGYFHDKVPGNDASVEEKTAALPEIFVQVSRPEADKKSEVIEGVCIL 813
Query: 594 AKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHD 653
A+ P LHPGD+RV+RAV+VP L H+ D V+ P G+R + CSG D DG+ Y V WD D
Sbjct: 814 ARNPSLHPGDIRVVRAVNVPQLRHLQDVVVLPQTGDRDIASMCSGGDLDGDDYIVIWDQD 873
Query: 654 RIPPLQF-QPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDK 712
+P F +P YT + L RDVT+ D+ +F Y+ ND L I +AH+ A D
Sbjct: 874 LLPKDWFREPMKYTSNKAQDLDRDVTVNDITSFFVTYMKNDFLPRIAHAHLALADFLEDG 933
Query: 713 AMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKT---WYESQHIVGN 769
+C L +L S D++KTG+ A + L + +P FMEK +K Y S I+G
Sbjct: 934 VNEEKCIRLAQLHSDAVDYNKTGIPAILTRNLEPRKWPHFMEKFNKPKDRIYHSNKILGQ 993
Query: 770 LYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEV-NGFKEVAMQFDGFKYRTEYDNKLGNL 828
LY V I + F K + + ++EV + A G +YD+ + +
Sbjct: 994 LYDAVERIDFVPSLEMPFDK----RLLNCEIEVPDDLLTFAKNLKG-----QYDDAMRRI 1044
Query: 829 MDYYGIKTEAEMLSRCIMEMA---KSFDKKRDLEAISFSVRSLRKE 871
M + IKTE E+ S ++ A K + ++ AIS ++R K+
Sbjct: 1045 MAQHEIKTEFEIWSTFVLGHANTSKDYKFHEEIGAISATLRDTFKK 1090
>gi|392864142|gb|EAS35051.2| RNA-directed RNA polymerase [Coccidioides immitis RS]
Length = 1403
Score = 316 bits (810), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 228/762 (29%), Positives = 364/762 (47%), Gaps = 121/762 (15%)
Query: 198 LVQFTLLPGFVFSCNSDLNQDGKHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSP 257
L ++T+ FV + + + LE + + YDP + K +S + P
Sbjct: 388 LNEYTIGKEFVAALVALGETKARELLEHVASEKHVYYDPKKIFDILFVKPATSRRIPKY- 446
Query: 258 AVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYS 317
Y+ VTPS VYF P + ++NRV+R Y + D FLR+ F DE +
Sbjct: 447 -------CCYMRTARVTPSTVYFGTPSVDITNRVIRHYIEYADRFLRVRFTDEK----FE 495
Query: 318 TVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE 377
+ P ++T E ++ RV T+ NGI +GD+ +E LAF NSQ RE+ + FAS P
Sbjct: 496 GRIQPSHNNTMDE----VFTRVKRTMMNGITLGDRHYEFLAFGNSQFREHGAYFFASLPH 551
Query: 378 LTAADIRERMGDFREIKNVTKYAARLGQSFASS----------REALHVDSN-------I 420
LTAA+IR MG F +IK + ++AARLGQ F+++ RE + N +
Sbjct: 552 LTAANIRAWMGHFSDIKEIARHAARLGQCFSTTRAVTGCPVQIREIEDIQRNGYTFSDGV 611
Query: 421 GKISAELAETVAKK------CGYAIYTPSAFQIRYGGYK-------------VTLRNNMF 461
G+IS LA+ V + CG PS FQ R GG K V +R + +
Sbjct: 612 GRISRFLAQMVMTEFKIKTPCGEP---PSVFQFRLGGCKGILTVSPEAQRQQVHIRKSQY 668
Query: 462 KYKSESTSLDILANSKYQREGVARLRL---------DNVFERKQREVVARLDAILTDSSK 512
K+ + L+++ +S + + R + D VF K R ++ L+ +T ++
Sbjct: 669 KFPAIHNGLEVIRHSHFCMASLNRQLIVVLSSLEVPDEVFLEKLRMMLGNLELAMTSETQ 728
Query: 513 VQEAL-ELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNG 571
L + + + T VL E++ G++ EPF++ + + + A + L+ +A+I I+ G
Sbjct: 729 AIHLLHKYIDPNQMTLVLAEMIQDGFQSSKEPFVTSLLELWRAWQIKYLKEKAKIIIEEG 788
Query: 572 QAMMGCLDEKGTL--------------------------------------EYGQGLMVV 593
+ GCLDE GTL E +G ++
Sbjct: 789 ACLFGCLDETGTLKGLFHDNIPSKDASYEERLACLPEIFVQISRANNDGKYEIIEGPCII 848
Query: 594 AKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHD 653
A+ P LHPGD+RV++AV+ PALHH+ D ++FP G+R + CSG D DG+ Y V WD D
Sbjct: 849 ARNPSLHPGDIRVVKAVNAPALHHLRDVIVFPQTGDRDIPSMCSGGDLDGDDYLVIWDQD 908
Query: 654 RIPPLQF-QPTAYTPAPEKI-LARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPD 711
+P F QP Y P+ + + L+RDVT+ D+ +F Y+ ND L I ++H+ +A
Sbjct: 909 LLPKDWFKQPMNYAPSVKALRLSRDVTVNDITSFFVTYMKNDRLAQIAHSHLAWADYLEK 968
Query: 712 KAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDK---TWYESQHIVG 768
++C L +L S D++KTG+ A + L + +P FMEK+ K Y SQ I+G
Sbjct: 969 GVNDSKCIRLAELHSAAVDYNKTGIPAKMTKDLAPRKWPHFMEKKHKPKDAQYISQKILG 1028
Query: 769 NLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVN-GFKEVAMQFDGFKYRTEYDNKLGN 827
LY V + F + ++ +EVN VA + + YD +
Sbjct: 1029 KLYDIVERVNYRPKLEAPFDD----RILNSGIEVNDDLLAVAAEL-----KVLYDADMCR 1079
Query: 828 LMDYYGIKTEAEMLSRCIM---EMAKSFDKKRDLEAISFSVR 866
+M + IKTE E+ S ++ M+K + ++ IS ++R
Sbjct: 1080 IMAQHEIKTEFEVWSTFVLSHSNMSKDYKFHEEIGQISCALR 1121
>gi|303313157|ref|XP_003066590.1| RNA-directed RNA polymerase, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240106252|gb|EER24445.1| RNA-directed RNA polymerase, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 1445
Score = 316 bits (809), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 228/762 (29%), Positives = 364/762 (47%), Gaps = 121/762 (15%)
Query: 198 LVQFTLLPGFVFSCNSDLNQDGKHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSP 257
L ++T+ FV + + + LE + + YDP + K +S + P
Sbjct: 430 LNEYTIGKEFVTALVALGETKARELLEHVASEKHVYYDPKKIFDILFVKPATSRRIPKY- 488
Query: 258 AVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYS 317
Y+ VTPS VYF P + ++NRV+R Y + D FLR+ F DE +
Sbjct: 489 -------CCYMRTARVTPSTVYFGTPSVDITNRVIRHYIEYADRFLRVRFTDEK----FE 537
Query: 318 TVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE 377
+ P ++T E ++ RV T+ NGI +GD+ +E LAF NSQ RE+ + FAS P
Sbjct: 538 GRIQPSHNNTMDE----VFTRVKRTMMNGITLGDRHYEFLAFGNSQFREHGAYFFASLPH 593
Query: 378 LTAADIRERMGDFREIKNVTKYAARLGQSFASS----------REALHVDSN-------I 420
LTAA+IR MG F +IK + ++AARLGQ F+++ RE + N +
Sbjct: 594 LTAANIRAWMGHFSDIKEIARHAARLGQCFSTTRAVTGCPVQIREIEDIQRNGYTFSDGV 653
Query: 421 GKISAELAETVAKK------CGYAIYTPSAFQIRYGGYK-------------VTLRNNMF 461
G+IS LA+ V + CG PS FQ R GG K V +R + +
Sbjct: 654 GRISRFLAQMVMTEFKIKTPCGEP---PSVFQFRLGGCKGILTVSPEAQRQQVHIRKSQY 710
Query: 462 KYKSESTSLDILANSKYQREGVARLRL---------DNVFERKQREVVARLDAILTDSSK 512
K+ + L+++ +S + + R + D VF K R ++ L+ +T ++
Sbjct: 711 KFPAIHNGLEVIRHSHFCMASLNRQLIVVLSSLEVPDEVFLEKLRMMLGNLELAMTSETQ 770
Query: 513 VQEAL-ELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNG 571
L + + + T VL E++ G++ EPF++ + + + A + L+ +A+I I+ G
Sbjct: 771 AIHLLYKYIDPNQMTLVLAEMIQDGFQSSKEPFVTSLLELWRAWQIKYLKEKAKIIIEEG 830
Query: 572 QAMMGCLDEKGTL--------------------------------------EYGQGLMVV 593
+ GCLDE GTL E +G ++
Sbjct: 831 ACLFGCLDETGTLKGFFHDNIPSKDASYEERLACLPEIFVQISRANNDGKYEIIEGPCII 890
Query: 594 AKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHD 653
A+ P LHPGD+RV++AV+ PALHH+ D ++FP G+R + CSG D DG+ Y V WD D
Sbjct: 891 ARNPSLHPGDIRVVKAVNAPALHHLRDVIVFPQTGDRDIPSMCSGGDLDGDDYLVIWDQD 950
Query: 654 RIPPLQF-QPTAYTPAPEKI-LARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPD 711
+P F QP Y P+ + + L+RDVT+ D+ +F Y+ ND L I ++H+ +A
Sbjct: 951 LLPKDWFKQPMNYAPSVKALRLSRDVTVNDITSFFVTYMKNDRLAQIAHSHLAWADYLEK 1010
Query: 712 KAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDK---TWYESQHIVG 768
++C L +L S D++KTG+ A + L + +P FMEK+ K Y SQ I+G
Sbjct: 1011 GVNDSKCIRLAELHSAAVDYNKTGIPAKMTKDLAPRKWPHFMEKKHKPKDAQYISQKILG 1070
Query: 769 NLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVN-GFKEVAMQFDGFKYRTEYDNKLGN 827
LY V + F + ++ +EVN VA + + YD +
Sbjct: 1071 KLYDIVERVNYRPKLEAPFDD----RILNSGIEVNDDLLAVAAEL-----KVLYDADMCR 1121
Query: 828 LMDYYGIKTEAEMLSRCIM---EMAKSFDKKRDLEAISFSVR 866
+M + IKTE E+ S ++ M+K + ++ IS ++R
Sbjct: 1122 IMAQHEIKTEFEVWSTFVLSHSNMSKDYKFHEEIGQISCALR 1163
>gi|317151427|ref|XP_001824654.2| RNA-directed RNA polymerase (Sad-1) [Aspergillus oryzae RIB40]
Length = 1403
Score = 316 bits (809), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 231/766 (30%), Positives = 363/766 (47%), Gaps = 120/766 (15%)
Query: 198 LVQFTLLPGFVFSCNSDLNQDGKHALEMLFHL---RECCYDPVSWLREQYRKHVSSGQFP 254
L +FT+ F S+L + A+++L H+ ++ YDP+ ++ K V+ + P
Sbjct: 403 LSEFTMTREFAVKL-SELGE--TQAVKLLEHVSAKKQVYYDPMKIFDLKFIKGVTQAKIP 459
Query: 255 TSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGK 314
Y++ +TPS +Y+ P + +SNRV+R + + D FLR+ F DE L
Sbjct: 460 PY--------CCYMHSARITPSTIYYNTPTVDISNRVIRRFIEHADRFLRVRFTDEKLLG 511
Query: 315 LYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFAS 374
+I+ST I+ R+ L NGIVIGD+++E LAF NSQ RE+ + FA
Sbjct: 512 --------RINSTTDSTMDEIFTRIKRALTNGIVIGDRRYEFLAFGNSQFREHGAYFFAP 563
Query: 375 RPELTAADIRERMGDFREIKNVTKYAARLGQSFASS-----------------REALHVD 417
P LTAA+IR MG F I+NV K+AARLGQ F+++ R +
Sbjct: 564 LPNLTAANIRAWMGHFNSIRNVAKHAARLGQCFSTTRAIAGCPVDVVKIEDVERNGYNFS 623
Query: 418 SNIGKISAELAETVAKKCGYAIYT---PSAFQIRYGGYK-------------VTLRNNMF 461
+G+IS LA+ + T PSAFQ R GG K V +R + F
Sbjct: 624 DGVGRISRFLAQMSMSELKIKTPTGEPPSAFQFRLGGCKGMLAVSSEAQRQEVHIRKSQF 683
Query: 462 KYKSESTSLDILANSKYQREGVARLRL---------DNVFERKQREVVARLD-AILTDSS 511
K+ + L+I+ S++ + R + D VF K ++ LD A+ +D
Sbjct: 684 KFAAIHNGLEIVRWSQFSMATLNRQLIIVLSTLGIPDQVFHAKLHTMLQGLDQALESDPQ 743
Query: 512 KVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNG 571
+ + + + T + +++ G++ EPFL+ + + A +L L+ +ARI + G
Sbjct: 744 AIYWLKKYVDPNQMTLTISQMVLDGFRRSKEPFLTSVLTLWRAWHLKYLKEKARIAVDQG 803
Query: 572 QAMMGCLDEKGTL--------------------------------------EYGQGLMVV 593
++GC+DE G L E +G+ ++
Sbjct: 804 ACLLGCMDETGLLQGYFHDKVPGNDASVEEKTAALPEIFVQVSRPEADKKSEVIEGVCIL 863
Query: 594 AKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHD 653
A+ P LHPGD+RV+RAV+VP L H+ D V+ P G+R + CSG D DG+ Y V WD D
Sbjct: 864 ARNPSLHPGDIRVVRAVNVPQLRHLQDVVVLPQTGDRDIASMCSGGDLDGDDYIVIWDQD 923
Query: 654 RIPPLQF-QPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDK 712
+P F +P YT + L RDVT+ D+ +F Y+ ND L I +AH+ A D
Sbjct: 924 LLPKDWFREPMKYTSNKAQDLDRDVTVNDITSFFVTYMKNDFLPRIAHAHLALADFLEDG 983
Query: 713 AMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKT---WYESQHIVGN 769
+C L +L S D++KTG+ A + L + +P FMEK +K Y S I+G
Sbjct: 984 VNEEKCIRLAQLHSDAVDYNKTGIPAILTRNLEPRKWPHFMEKFNKPKDRIYHSNKILGQ 1043
Query: 770 LYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEV-NGFKEVAMQFDGFKYRTEYDNKLGNL 828
LY V I + F K + + ++EV + A G +YD+ + +
Sbjct: 1044 LYDAVERIDFVPSLEMPFDK----RLLNCEIEVPDDLLTFAKNLKG-----QYDDAMRRI 1094
Query: 829 MDYYGIKTEAEMLSRCIMEMA---KSFDKKRDLEAISFSVRSLRKE 871
M + IKTE E+ S ++ A K + ++ AIS ++R K+
Sbjct: 1095 MAQHEIKTEFEIWSTFVLGHANTSKDYKFHEEIGAISATLRDTFKK 1140
>gi|119192036|ref|XP_001246624.1| hypothetical protein CIMG_00395 [Coccidioides immitis RS]
Length = 1492
Score = 316 bits (809), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 228/762 (29%), Positives = 364/762 (47%), Gaps = 121/762 (15%)
Query: 198 LVQFTLLPGFVFSCNSDLNQDGKHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSP 257
L ++T+ FV + + + LE + + YDP + K +S + P
Sbjct: 477 LNEYTIGKEFVAALVALGETKARELLEHVASEKHVYYDPKKIFDILFVKPATSRRIPKY- 535
Query: 258 AVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYS 317
Y+ VTPS VYF P + ++NRV+R Y + D FLR+ F DE +
Sbjct: 536 -------CCYMRTARVTPSTVYFGTPSVDITNRVIRHYIEYADRFLRVRFTDEK----FE 584
Query: 318 TVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE 377
+ P ++T E ++ RV T+ NGI +GD+ +E LAF NSQ RE+ + FAS P
Sbjct: 585 GRIQPSHNNTMDE----VFTRVKRTMMNGITLGDRHYEFLAFGNSQFREHGAYFFASLPH 640
Query: 378 LTAADIRERMGDFREIKNVTKYAARLGQSFASS----------REALHVDSN-------I 420
LTAA+IR MG F +IK + ++AARLGQ F+++ RE + N +
Sbjct: 641 LTAANIRAWMGHFSDIKEIARHAARLGQCFSTTRAVTGCPVQIREIEDIQRNGYTFSDGV 700
Query: 421 GKISAELAETVAKK------CGYAIYTPSAFQIRYGGYK-------------VTLRNNMF 461
G+IS LA+ V + CG PS FQ R GG K V +R + +
Sbjct: 701 GRISRFLAQMVMTEFKIKTPCGEP---PSVFQFRLGGCKGILTVSPEAQRQQVHIRKSQY 757
Query: 462 KYKSESTSLDILANSKYQREGVARLRL---------DNVFERKQREVVARLDAILTDSSK 512
K+ + L+++ +S + + R + D VF K R ++ L+ +T ++
Sbjct: 758 KFPAIHNGLEVIRHSHFCMASLNRQLIVVLSSLEVPDEVFLEKLRMMLGNLELAMTSETQ 817
Query: 513 VQEAL-ELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNG 571
L + + + T VL E++ G++ EPF++ + + + A + L+ +A+I I+ G
Sbjct: 818 AIHLLHKYIDPNQMTLVLAEMIQDGFQSSKEPFVTSLLELWRAWQIKYLKEKAKIIIEEG 877
Query: 572 QAMMGCLDEKGTL--------------------------------------EYGQGLMVV 593
+ GCLDE GTL E +G ++
Sbjct: 878 ACLFGCLDETGTLKGLFHDNIPSKDASYEERLACLPEIFVQISRANNDGKYEIIEGPCII 937
Query: 594 AKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHD 653
A+ P LHPGD+RV++AV+ PALHH+ D ++FP G+R + CSG D DG+ Y V WD D
Sbjct: 938 ARNPSLHPGDIRVVKAVNAPALHHLRDVIVFPQTGDRDIPSMCSGGDLDGDDYLVIWDQD 997
Query: 654 RIPPLQF-QPTAYTPAPEKI-LARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPD 711
+P F QP Y P+ + + L+RDVT+ D+ +F Y+ ND L I ++H+ +A
Sbjct: 998 LLPKDWFKQPMNYAPSVKALRLSRDVTVNDITSFFVTYMKNDRLAQIAHSHLAWADYLEK 1057
Query: 712 KAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDK---TWYESQHIVG 768
++C L +L S D++KTG+ A + L + +P FMEK+ K Y SQ I+G
Sbjct: 1058 GVNDSKCIRLAELHSAAVDYNKTGIPAKMTKDLAPRKWPHFMEKKHKPKDAQYISQKILG 1117
Query: 769 NLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVN-GFKEVAMQFDGFKYRTEYDNKLGN 827
LY V + F + ++ +EVN VA + + YD +
Sbjct: 1118 KLYDIVERVNYRPKLEAPFDD----RILNSGIEVNDDLLAVAAEL-----KVLYDADMCR 1168
Query: 828 LMDYYGIKTEAEMLSRCIM---EMAKSFDKKRDLEAISFSVR 866
+M + IKTE E+ S ++ M+K + ++ IS ++R
Sbjct: 1169 IMAQHEIKTEFEVWSTFVLSHSNMSKDYKFHEEIGQISCALR 1210
>gi|320036523|gb|EFW18462.1| RNA-directed RNA polymerase Rdp1 [Coccidioides posadasii str.
Silveira]
Length = 1444
Score = 315 bits (806), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 216/693 (31%), Positives = 341/693 (49%), Gaps = 113/693 (16%)
Query: 267 YVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISS 326
Y+ VTPS VYF P + ++NRV+R Y + D FLR+ F DE + + P ++
Sbjct: 490 YMRTARVTPSTVYFGTPSVDITNRVIRHYIEYADRFLRVRFTDEK----FEGRIQPSHNN 545
Query: 327 TNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRER 386
T E ++ RV T+ NGI +GD+ +E LAF NSQ RE+ + FAS P LTAA+IR
Sbjct: 546 TMDE----VFTRVKRTMMNGITLGDRHYEFLAFGNSQFREHGAYFFASLPHLTAANIRAW 601
Query: 387 MGDFREIKNVTKYAARLGQSFASS----------REALHVDSN-------IGKISAELAE 429
MG F +IK + ++AARLGQ F+++ RE + N +G+IS LA+
Sbjct: 602 MGHFSDIKEIARHAARLGQCFSTTRAVTGCPVQIREIEDIQRNGYTFSDGVGRISRFLAQ 661
Query: 430 TVAKK------CGYAIYTPSAFQIRYGGYK-------------VTLRNNMFKYKSESTSL 470
V + CG PS FQ R GG K V +R + +K+ + L
Sbjct: 662 MVMTEFKIKTPCGEP---PSVFQFRLGGCKGILTVSPEAQRQQVHIRKSQYKFPAIHNGL 718
Query: 471 DILANSKYQREGVARLRL---------DNVFERKQREVVARLDAILTDSSKVQEAL-ELM 520
+++ +S + + R + D VF K R ++ L+ +T ++ L + +
Sbjct: 719 EVIRHSHFCMASLNRQLIVVLSSLEVPDEVFLEKLRMMLGNLELAMTSETQAIHLLHKYI 778
Query: 521 SSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDE 580
+ T VL E++ G++ EPF++ + + + A + L+ +A+I I+ G + GCLDE
Sbjct: 779 DPNQMTLVLAEMIQDGFQSSKEPFVTSLLELWRAWQIKYLKEKAKIIIEEGACLFGCLDE 838
Query: 581 KGTL--------------------------------------EYGQGLMVVAKKPCLHPG 602
GTL E +G ++A+ P LHPG
Sbjct: 839 TGTLKGFFHDNIPSKDASYEERLACLPEIFVQISRANNDGKYEIIEGPCIIARNPSLHPG 898
Query: 603 DMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQF-Q 661
D+RV++AV+ PALHH+ D ++FP G+R + CSG D DG+ Y V WD D +P F Q
Sbjct: 899 DIRVVKAVNAPALHHLRDVIVFPQTGDRDIPSMCSGGDLDGDDYLVIWDQDLLPKDWFKQ 958
Query: 662 PTAYTPAPEKI-LARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPD 720
P Y P+ + + L+RDVT+ D+ +F Y+ ND L I ++H+ +A ++C
Sbjct: 959 PMNYAPSVKALRLSRDVTVNDITSFFVTYMKNDRLAQIAHSHLAWADYLEKGVNDSKCIR 1018
Query: 721 LVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDK---TWYESQHIVGNLYREVNGI 777
L +L S D++KTG+ A + L + +P FMEK+ K Y SQ I+G LY V +
Sbjct: 1019 LAELHSAAVDYNKTGIPAKMTKDLAPRKWPHFMEKKHKPKDAQYISQKILGKLYDIVERV 1078
Query: 778 APSTTTIKSFAKEGAMQFYDTDMEVN-GFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKT 836
F + ++ +EVN VA + + YD + +M + IKT
Sbjct: 1079 NYRPKLEAPFDD----RILNSGIEVNDDLLAVAAEL-----KVLYDADMCRIMAQHEIKT 1129
Query: 837 EAEMLSRCIM---EMAKSFDKKRDLEAISFSVR 866
E E+ S ++ M+K + ++ IS ++R
Sbjct: 1130 EFEVWSTFVLSHSNMSKDYKFHEEIGQISCALR 1162
>gi|121704872|ref|XP_001270699.1| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus clavatus
NRRL 1]
gi|119398845|gb|EAW09273.1| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus clavatus
NRRL 1]
Length = 1428
Score = 314 bits (804), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 236/844 (27%), Positives = 396/844 (46%), Gaps = 128/844 (15%)
Query: 126 LCSDLRKFGFFL------SYESVDYKLELSNESIWQIELHRPSGHSVSIGQ------SSA 173
C+ LR + F+ S+ +DY E + IW+ + S S + +
Sbjct: 356 FCNILRDYNIFITKTKTNSFSVLDYSRERA-PPIWKWIDYTDSQTSKAFSSLEELIDETY 414
Query: 174 ICLELPSRALIPKALKDFFHYKESLVQFTLLPGFVFSCNSDLNQDGKHALEMLFHLRECC 233
+ L P R + + + L +FT+ GF + + LE + +E
Sbjct: 415 VHLPFPVRYQLEVCISHNY-----LSEFTMTRGFAIKLSGLGEAEALRLLEHVATKKEVF 469
Query: 234 YDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVR 293
++P+ ++ K V+ + P+ Y+ +TP+ +Y+ P + +SNRV+R
Sbjct: 470 HNPMKIFDLKFVKGVTHAKIPSY--------CCYMRSARITPTTIYYNTPSVDISNRVIR 521
Query: 294 SYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKK 353
Y + D FLR+ F DE KL+ +I+ST + ++ R+ L NGIV+GD++
Sbjct: 522 HYIEFADRFLRVRFTDE---KLFG-----RINSTMDDTMDEVFTRIKRALANGIVVGDRR 573
Query: 354 FETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSRE- 412
+E LAF NSQ RE+ + FA P LTAA+IR MG F +I+NV K+AARLGQ F+++R
Sbjct: 574 YEFLAFGNSQFREHGAYFFAPLPNLTAANIRAWMGTFNDIRNVAKHAARLGQCFSTTRAI 633
Query: 413 -----ALH-----------VDSNIGKISAELAETVAKKCGYAI---YTPSAFQIRYGG-- 451
+H +G+IS LA+ VA + PSAFQ R GG
Sbjct: 634 SGCPVQIHKIDDVVRNGYTFSDGVGRISRFLAQMVASELKIKTPIDEPPSAFQFRLGGCK 693
Query: 452 -----------YKVTLRNNMFKYKSESTSLDILANSKYQREGVARLRL---------DNV 491
++V +R + +K+ + L+I+ S++ + R + D V
Sbjct: 694 GMLTVSPEAQRHEVHIRKSQYKFAAAHNGLEIIRWSQFSMATLNRQLIIVLSSLGIPDQV 753
Query: 492 FERKQREVVARL-DAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQ 550
F K + ++ L +A+ +DS + + + + T + +++ G++ EPF++ + +
Sbjct: 754 FHEKLQAMLRSLNEAMESDSQAIYWLKKYVDPNQMTLTVSQMVLDGFRRTQEPFVTSVLR 813
Query: 551 TFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL-------------------------- 584
+ A +L L+ +A+I I G ++GC+DE G L
Sbjct: 814 LWRAWHLKYLKEKAKIAIDKGANLLGCMDETGILKGYFENVPAKDAPREKKLTSLPEVFV 873
Query: 585 -----EYG-----QGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTN 634
E G +G+ ++A+ P LHPGD+RV+RAV+VP L H+ D V+FP G+R +
Sbjct: 874 QILHPESGKYQIIEGVCILARNPSLHPGDIRVVRAVNVPELSHLKDVVVFPQTGDRDVPS 933
Query: 635 ECSGSDQDGEIYFVCWDHDRIPPLQFQ-PTAYTPAPEKILARDVTIEDVEEYFADYIVND 693
CSG D DG+ Y V WD D IP F+ P YT + L +DVT++ + +F Y+ ND
Sbjct: 934 MCSGGDLDGDDYLVIWDQDLIPKDWFRIPMKYTSDKAQDLNQDVTVDHITSFFVIYMKND 993
Query: 694 SLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFM 753
L I +AH+ +A +C L +L S D++KTG A + L+ K++P FM
Sbjct: 994 FLPRIAHAHLAWADRLEYGVNEGKCIRLAQLHSDAVDYNKTGRPANMTRSLQPKMWPHFM 1053
Query: 754 EKQDKT---WYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAM 810
EK+ K Y S I+G LY V + F M F + ++ +
Sbjct: 1054 EKKHKPKERIYRSGKILGQLYDAVERV--------DFVPSLEMPFDERILKCRLQVSDDL 1105
Query: 811 QFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIM---EMAKSFDKKRDLEAISFSVRS 867
+ +YD + +M + I+TE E+ S ++ M+K + +L +S S+R
Sbjct: 1106 MQTARDLKADYDAAMHRIMAQHEIRTEFEVWSTFVLSHANMSKDYKFHEELGMLSLSLRG 1165
Query: 868 LRKE 871
+ ++
Sbjct: 1166 IYRK 1169
>gi|407918335|gb|EKG11606.1| RNA-dependent RNA polymerase eukaryotic-type [Macrophomina phaseolina
MS6]
Length = 1511
Score = 314 bits (804), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 216/719 (30%), Positives = 343/719 (47%), Gaps = 117/719 (16%)
Query: 219 GKHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKV 278
K LE + ++P+ + RK Q P +Y +TPS +
Sbjct: 390 AKSVLEAAMDKKRRFFEPMDIFKLPLRKEAMLKQTPAH--------CVYSRSANITPSTI 441
Query: 279 YFCGPEISLSNRVVRSYPDEIDNFLRLSFVDED-LGKLYSTVLSPQISSTNGERRTRIYE 337
F P + +SNR++R Y D FLR+ F +E GK I S+ ++ T ++
Sbjct: 442 TFASPTMEISNRIIREYLRFSDRFLRVKFTEEKPRGK---------IRSSRDDKDTELFT 492
Query: 338 RVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA-------SRPELTAADIRERMGDF 390
RV TLRNGI IGD+ +E LAF NSQ RE+ + FA +T +DIR MGDF
Sbjct: 493 RVWRTLRNGIAIGDRHYEFLAFGNSQFREHGAYFFAPIEDDLCDENNITPSDIRMLMGDF 552
Query: 391 REIKNVTKYAARLGQSFASSREALHVDSN-----------------IGKISAELAETVAK 433
EI+ V +YA+R+GQ F+++REA V ++ +GKISA LA +A+
Sbjct: 553 DEIQEVARYASRMGQCFSTTREATSVKAHVSGHEDIMRNGYIFTDGVGKISAALAVKIAQ 612
Query: 434 KCGYAIYT---PSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLDILANSK 477
+ G+ PS FQ R GG K + +R + K+ + S L+I+ S+
Sbjct: 613 EFGHPTAVEDPPSVFQFRLGGCKGVLAVSKELGADEIHIRRSQDKFPAPSEGLEIIKWSQ 672
Query: 478 YQREGVARLRL---------DNVFERKQREVVARLDAILTDSSKVQEALE-LMSSAENTN 527
+ + R + + VF +K ++ ++ L +T L+ + S + +
Sbjct: 673 FATATLNRQLIIILDARGVPNGVFMKKLQDQLSDLKKAMTSEVVALRLLQRFVDSNQVSL 732
Query: 528 VLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL--- 584
L ++ G+ EPFL + + ++ L+ +AR+F+ G ++GCLDE +L
Sbjct: 733 TLAGMVLDGFMGIKEPFLMSVLHLWRTWSIKYLKEKARLFVGEGAFLLGCLDETASLHGH 792
Query: 585 -------------------------------EYGQGLMVVAKKPCLHPGDMRVLRAVDVP 613
+ +G+ +VA+ P LHPGD+RV++AV+ P
Sbjct: 793 FYSEQNWKSLQTNLLPQIFVQVSDINHPGRYKIIEGVCIVARNPSLHPGDVRVVQAVNQP 852
Query: 614 ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKIL 673
LHH+ + V+FP G+R N CSG D DG+ Y V WD + IP ++P +TP P+K
Sbjct: 853 KLHHLKNVVVFPQTGDRDIPNMCSGGDLDGDDYMVVWDKELIPQKNYKPMDFTP-PQKQT 911
Query: 674 ARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSK 733
VT+E + ++F +YI NDSLG+I NAH+ A E + MS RC +L ++ S D+ K
Sbjct: 912 VEKVTMEHITKFFVEYIKNDSLGVIANAHLAAADFEDEGVMSKRCLELARIHSTAVDYPK 971
Query: 734 TGVAATIPSRLRVKIYPDFMEK-----QDKTWYESQHIVGNLYREVNGIAPSTTTIKSFA 788
+GVAA + RL + YP FM+ ++ YES+ I+G L+ V + F
Sbjct: 972 SGVAAIMDKRLAPRRYPHFMQNNFRNLENGRCYESKKILGQLFDAVKEV--------DFD 1023
Query: 789 KEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIME 847
+ F + + + G + YD + LM + I+TE E+ S I++
Sbjct: 1024 PQYDAPFDSRILNAYNLEPATLARAG-ALKVLYDAAVRRLMAQHDIQTEFEVWSTFILK 1081
>gi|326481841|gb|EGE05851.1| hypothetical protein TEQG_04860 [Trichophyton equinum CBS 127.97]
Length = 1579
Score = 313 bits (802), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 225/741 (30%), Positives = 359/741 (48%), Gaps = 104/741 (14%)
Query: 198 LVQFTLLPGFVFSCNSDLNQDGKHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSP 257
L ++T+ F S +DGK LE + + DP+ Q+ V++ + P
Sbjct: 554 LSEYTIDKDFAKKLESLGERDGKDLLEYVAQEKTVYLDPMEIFNIQFFSGVTNRRIPKY- 612
Query: 258 AVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYS 317
Y+ VTPS +YF P + SNRV+R Y + D FLR+ F DE
Sbjct: 613 -------CCYMRSATVTPSTIYFNTPTVDTSNRVIRHYIEYADRFLRVRFTDEKY----- 660
Query: 318 TVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE 377
+I+ST ++ RV T+ NGI +GD+ +E LAF NSQ RE+ + FAS P
Sbjct: 661 ---EGRINSTYNNCMDEVFTRVKRTMTNGITVGDRHYEFLAFGNSQFREHGAYFFASLPN 717
Query: 378 LTAADIRERMGDFREIKNVTKYAARLGQSFASS----------REALHVDSN-------I 420
LTAA+IR MG F +IK V K+AARLGQ F+++ RE V+ N +
Sbjct: 718 LTAANIRAWMGHFSDIKIVAKHAARLGQCFSTTRAVTGCPVTVREIDEVERNGYIFSDGV 777
Query: 421 GKISAELAETVAKKCGYAIYT---PSAFQIRYGGYKVTLRNNMFKYKSESTSLDILANSK 477
G+IS LA+ + + + PS FQ R GG ++ N + E A +
Sbjct: 778 GRISKFLAQMIMTEFKLQTPSEEPPSVFQFRLGG---SIHNGL-----EIIRWSQFAAAH 829
Query: 478 YQREGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEALE-LMSSAENTNVLKEL 532
R+ + L D +F +K R ++ ++ +T +K L+ + + T +L ++
Sbjct: 830 LNRQLIVVLSALGVSDEIFIQKLRLMLEDMEQAMTSETKAMSMLQKRVDPNQMTLILAQM 889
Query: 533 LNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGT--------- 583
++ G++ +PF+ + + + A + L+ +A++FI G + GCLDE T
Sbjct: 890 VHDGFQGSCDPFVKSLLELWRAWQIKYLKEKAKVFIDQGACLFGCLDETATLKGYHEKKR 949
Query: 584 ----------LEY-------------------GQGLMVVAKKPCLHPGDMRVLRAVDVPA 614
LEY +G ++A+ P LHPGD+RV+RAV+VPA
Sbjct: 950 PSIEATYEERLEYLPEIFVQVFDNEEEKKYRVIEGPCILARNPSLHPGDIRVVRAVNVPA 1009
Query: 615 LHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIP-PLQF--QPTAYTPAPEK 671
LHH+ D ++FP G+R + CSG D DG+ Y V WD D +P P + +P YT + +
Sbjct: 1010 LHHLKDVIVFPQTGDRDVPSTCSGGDLDGDDYIVIWDQDLVPLPKDWFREPMDYTASNAQ 1069
Query: 672 ILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDF 731
L RDVT+ D+ +F Y+ ND L I +AH+ +A D RC L +L S D+
Sbjct: 1070 SLTRDVTVNDITSFFVTYMKNDRLPQIAHAHLAFADYLEDGVNDERCIQLAQLHSAAVDY 1129
Query: 732 SKTGVAATIPSRLRVKIYPDFMEKQDK---TWYESQHIVGNLYREVNGIAPSTTTIKSFA 788
+K+G+ A + L + +P FMEK+ K Y+S+ I+G +Y V + F
Sbjct: 1130 NKSGIPANMTRDLVPRKWPHFMEKKYKPKEAQYQSKKILGQIYDIVERVEFRPKLEAPFD 1189
Query: 789 KEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIM-- 846
+ + + D+ V+ +A + K ++ YD + +M + IKTE E+ S ++
Sbjct: 1190 E----RILNCDISVSEDMVLAAK----KLKSLYDADMRRIMAQHEIKTEFEVWSTFVLGH 1241
Query: 847 -EMAKSFDKKRDLEAISFSVR 866
M+K + +L IS ++R
Sbjct: 1242 ANMSKDYKFHEELGQISSALR 1262
>gi|315047102|ref|XP_003172926.1| RNA-dependent RNA polymerase 1 [Arthroderma gypseum CBS 118893]
gi|311343312|gb|EFR02515.1| RNA-dependent RNA polymerase 1 [Arthroderma gypseum CBS 118893]
Length = 1455
Score = 311 bits (798), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 219/740 (29%), Positives = 357/740 (48%), Gaps = 114/740 (15%)
Query: 217 QDGKHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPS 276
+D K LE + H + +DP+ Q+ V++ + P Y+ VTPS
Sbjct: 432 RDAKDLLEYVAHEKVVYHDPMKIFDIQFFSGVTNRRIPKY--------CCYMRSATVTPS 483
Query: 277 KVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIY 336
+YF P + SNRV+R Y + D FLR+ F DE +I+ST ++
Sbjct: 484 TIYFHTPTVDTSNRVIRHYIEYADRFLRVRFTDEKY--------EGRINSTYNNCMDEVF 535
Query: 337 ERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNV 396
RV T+ NG+++GD+ +E LAF NSQ RE+ + FAS P LTA++IR MG F +IK V
Sbjct: 536 TRVKRTMTNGVIVGDRHYEFLAFGNSQFREHGAYFFASLPNLTASNIRAWMGHFSDIKIV 595
Query: 397 TKYAARLGQSFASS----------REALHVDSN-------IGKISAELAETVAKKCGYAI 439
K+AARLGQ F+S+ RE ++ N +G+IS LA+ + +
Sbjct: 596 AKHAARLGQCFSSTKAVTGCPVTIREIDEIERNGYTFSDGVGRISKFLAQMIMTEFKLKT 655
Query: 440 YT---PSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLDILANSKYQREGV 483
+ PS FQ R GG K V ++ + +K+ + L+I+ S++ +
Sbjct: 656 PSEEPPSVFQFRLGGCKGILTVSPEAQRREVHIKKSQYKFAAVHNGLEIIRWSQFAAAYL 715
Query: 484 ARLRL---------DNVFERKQREVVARLDAILTDSSKVQEALE-LMSSAENTNVLKELL 533
R + D +F +K R ++ ++ +T +K L+ + + T +L +++
Sbjct: 716 NRQLIVVLSALGVTDEIFIKKLRLMLEDMEQAMTSETKAMSLLQKQVDPNQMTLLLAQMV 775
Query: 534 NCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL--------- 584
+ G++ ++PF++ + + + A + L+ +A+I I G + GCLDE TL
Sbjct: 776 HDGFQGTSDPFVTSLLELWRAWQIKYLKEKAKICIDGGACLFGCLDETATLKGYHEKTRP 835
Query: 585 -----------------------------EYGQGLMVVAKKPCLHPGDMRVLRAVDVPAL 615
+ +G ++A+ P LHPGD+RV+RAV+VPAL
Sbjct: 836 SIDATYEERLGYLPEIFVQVFDAEAERNYKIIEGPCILARNPSLHPGDIRVVRAVNVPAL 895
Query: 616 HHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIP-PLQF--QPTAYTPAPEKI 672
HH+ D ++F G+R + CSG D DG+ Y V WD D +P P + QP YT + +
Sbjct: 896 HHLKDVIVFSQTGDRDVPSTCSGGDLDGDDYIVIWDQDLVPLPKDWFRQPMDYTASNAQS 955
Query: 673 LARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFS 732
L RDVT+ D+ +F Y+ ND L I +AH+ +A D RC L +L S D++
Sbjct: 956 LTRDVTVNDITSFFVTYMKNDRLPQIAHAHLAFADFLEDGVNDKRCVQLAQLHSAAVDYN 1015
Query: 733 KTGVAATIPSRLRVKIYPDFMEKQDK---TWYESQHIVGNLYREVNGIAPSTTTIKSFAK 789
K+G+ A + L + +P FMEK+ K Y S+ I+G +Y V + F +
Sbjct: 1016 KSGIPANMTRDLVPRKWPHFMEKKYKPKEAQYHSKKILGQIYDIVERVEFRPKLEAPFDE 1075
Query: 790 EGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIM--- 846
+ + D+ V+ M K + YD + +M + IKTE E+ S ++
Sbjct: 1076 ----RILNCDISVSE----EMVLAAKKLKALYDADMRRIMAQHEIKTEFEVWSTFVLGHA 1127
Query: 847 EMAKSFDKKRDLEAISFSVR 866
M+K + +L IS ++R
Sbjct: 1128 NMSKDYKFHEELGQISSALR 1147
>gi|295667341|ref|XP_002794220.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226286326|gb|EEH41892.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1273
Score = 311 bits (798), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 210/711 (29%), Positives = 350/711 (49%), Gaps = 104/711 (14%)
Query: 264 GLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDE-DLGKLYSTVLSP 322
G Y+ VTPS +Y+ P I NRV+R Y + D FL + F DE ++GK++
Sbjct: 460 GCCYMRSAEVTPSTIYYKPPSIDTGNRVLRRYREYADRFLHVRFTDEKNMGKIFP----- 514
Query: 323 QISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAAD 382
S+ N +Y RV T++NGI IGD+ +E LAFSN+Q RE+ + FAS P LTAA+
Sbjct: 515 -YSNANIVCMNEVYTRVTLTMKNGITIGDRCYEFLAFSNAQLREHAAYFFASLPHLTAAN 573
Query: 383 IRERMGDFREIKNVTKYAARLGQSFASSR-------EALHVD----------SNIGKISA 425
IR ++G F +I+NV K+AARLGQ F+S+R + + +D +G IS
Sbjct: 574 IRAQLGKFNQIRNVAKHAARLGQCFSSTRALNGCPVQIVEIDDIERNGYTFSDGVGLIST 633
Query: 426 ELAETVAKKCGYAIYT-----PSAFQIRYGGYK-------------VTLRNNMFKYKSES 467
LA+ + + +AI T PS FQ R GG K V +R + +K+ +
Sbjct: 634 FLAQMIQSE--FAIETLSGEPPSVFQFRLGGCKGILTVSSKAHRREVHIRKSQYKFAAPH 691
Query: 468 TSLDILANSKYQREGVARLRL---------DNVFERKQREVVARLDAILTDSSKVQEALE 518
L+I+ +S + + R + D +F +K + ++ L+ +T ++A+
Sbjct: 692 NGLEIIRHSSFCFASLNRQLIIVLSSLGIPDEIFVKKLQVMLENLELAMTSQ---EQAVN 748
Query: 519 LMSSAENTN----VLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAM 574
L+ + + N VL +++ G++ +PF++ + + + + L+ +A+I I G +
Sbjct: 749 LLQTYVDPNQMTLVLADMVLDGFQQSQDPFVTSLLELWRVWQIKYLKAKAKIAIDKGAFL 808
Query: 575 MGCLDEKGTL-------------------------------------EYGQGLMVVAKKP 597
+GCLDE G+L E +GL ++A+ P
Sbjct: 809 LGCLDETGSLKGYFRSKRPGGGATYEQKLDCLPEIFVQISRHSEDTYEVIEGLCILARNP 868
Query: 598 CLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPP 657
LHPGD+RV++AVD+P LHH+ D V+ P G+R + CSG D DG+ Y V WD D +P
Sbjct: 869 SLHPGDIRVVKAVDIPDLHHLKDVVVLPQTGDRDIASMCSGGDLDGDDYVVIWDQDLLPK 928
Query: 658 LQF-QPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSN 716
F +P Y+ ++L RDVT++D+ ++F Y+ ND L I AH+ A D
Sbjct: 929 DWFEEPMDYSAPKSEVLDRDVTVDDIIKFFVSYMQNDRLPQIAPAHLAIADYSDDGVQDE 988
Query: 717 RCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEK---QDKTWYESQHIVGNLYRE 773
+C L L S D++K+G+ + L+ K +P FME+ + + Y S+ I+G LY
Sbjct: 989 KCLRLATLHSAAVDYNKSGMPVHMNRDLKPKKWPHFMERKFAKKDSQYTSRKILGQLYDI 1048
Query: 774 VNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYG 833
G+ ++ + + + F + N + + + + EYD + +M +
Sbjct: 1049 AGGV---YLNLQPHSAKRRLPFDQRILNANFEIDDKLLSFAKELKAEYDADIRRIMAQHE 1105
Query: 834 IKTEAEMLSRCIMEMAKSFDKKRDLEAISFSVRSLRKEARAWFNKKKNDSD 884
I++E E+ S ++ A + E I +LR++ R ++K D
Sbjct: 1106 IQSEEEVWSTFVLSHANMSKDYKFHEEIGLISSALRQKFRMLCHEKAGGKD 1156
>gi|258573507|ref|XP_002540935.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237901201|gb|EEP75602.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 1521
Score = 310 bits (794), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 226/779 (29%), Positives = 366/779 (46%), Gaps = 116/779 (14%)
Query: 198 LVQFTLLPGFVFSCNSDLNQDGKHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSP 257
L ++T+ F + + + + LE + + YDP+ + K +S + P
Sbjct: 509 LSEYTIGKDFTTTLAALGETNARELLEHVAGEKLVYYDPMKIFDILFVKPATSRRIPKY- 567
Query: 258 AVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYS 317
Y+ VTPS VYF P + +SNRV+R Y + D FLR+ F DE +
Sbjct: 568 -------CCYMRTARVTPSTVYFNTPSVDISNRVIRHYIEYADRFLRVRFTDER----FE 616
Query: 318 TVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE 377
+SP ++T E ++ R+ + NGI +GD+ +E LAF NSQ RE+ + FAS P
Sbjct: 617 GRISPSHNNTMDE----VFTRIKRAMMNGITLGDRHYEFLAFGNSQFREHGAYFFASLPH 672
Query: 378 LTAADIRERMGDFREIKNVTKYAARLGQSFASS----------REALHVDSN-------I 420
LTA++IR MG F +IK + ++AARLGQ F+++ RE ++ N +
Sbjct: 673 LTASNIRAWMGHFSDIKEIARHAARLGQCFSTTRAVTGCPVQIREIEDIERNGHTFSDGV 732
Query: 421 GKISAELAETVAKK------CGYAIYTPSAFQIRYGGYK-------------VTLRNNMF 461
G+IS LA+ + + CG PS FQ R GG K V +R + +
Sbjct: 733 GRISRFLAQMIMTEFKIKTPCGEP---PSVFQFRLGGCKGILTVSPEAQRREVHIRKSQY 789
Query: 462 KYKSESTSLDILANSKYQREGVARLRL---------DNVFERKQREVVARLDAILTDSSK 512
K+ + L+++ +S + + R + D +F K R ++ L+ ++ ++
Sbjct: 790 KFPAIHNGLEVIRHSHFSMASLNRQLIVVLSALEVPDEIFIEKLRVMLENLELAMSSEAQ 849
Query: 513 VQEAL-ELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNG 571
L + + + T VL E++ G++ EPF++ + + + A + L+ +A+I I++G
Sbjct: 850 AIHLLHKYVDPNQMTLVLAEMVQDGFQASKEPFVTSLLELWRAWQIKYLKEKAKIIIEDG 909
Query: 572 QAMMGCLDEKGTL--------------------------------------EYGQGLMVV 593
+ GCLDE GTL E +G +V
Sbjct: 910 ACLFGCLDETGTLKGFFNDKIPAANASYEEKLESLPEVFVQISRADNGGKYEVIEGPCIV 969
Query: 594 AKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHD 653
A+ P LHPGD+RV++AV+VPALHH+ D V+FP G++ + CSG D DG+ Y + WD D
Sbjct: 970 ARNPSLHPGDIRVVKAVNVPALHHLKDVVVFPQTGDKDVPSMCSGGDLDGDDYLIIWDQD 1029
Query: 654 RIPPLQF-QPTAYTPAPE-KILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPD 711
+P F QP Y P+ + L+RDVT+ D+ +F Y+ ND L I AH+ +A
Sbjct: 1030 LLPKNWFRQPMDYVPSTKAHCLSRDVTVNDITSFFVTYMKNDRLPQIALAHLAWADYLER 1089
Query: 712 KAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDK---TWYESQHIVG 768
+C L +L S D++KTG+ A + L + +P FMEK+ K Y SQ I+G
Sbjct: 1090 GVNDPKCMQLAELHSAAVDYNKTGIPAKMTKDLIPRKWPHFMEKKHKPKEAQYISQKILG 1149
Query: 769 NLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNL 828
LY + + F + +T ++ +AM + +T YD + +
Sbjct: 1150 QLYDRLERVDYRPKLEADFDERILSSGIETSDDL-----LAM---ATELKTLYDADMRRI 1201
Query: 829 MDYYGIKTEAEMLSRCIMEMAKSFDKKRDLEAISFSVRSLRKEARAWFNKKKNDSDSSH 887
M + I TE E+ S ++ A + E I +LR+ R +K D H
Sbjct: 1202 MAQHEINTEFEVWSTFVLSHANMSKDYKFHEEIGQIASALRERFRVLCFEKAGGKDFEH 1260
>gi|145245289|ref|XP_001394912.1| RNA-directed RNA polymerase (Sad-1) [Aspergillus niger CBS 513.88]
gi|134079610|emb|CAK40827.1| unnamed protein product [Aspergillus niger]
Length = 1382
Score = 309 bits (792), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 244/849 (28%), Positives = 392/849 (46%), Gaps = 130/849 (15%)
Query: 124 VKLCSDLRKFGFFLSYESVDYKLELSNES-----IWQ-IELHRPSGHSVS----IGQSSA 173
+LC+ R + ++ E D ++ + +W+ I+L S SVS + S+
Sbjct: 324 TQLCAIFRDYN--IAIEDTDRFIQWDDRQERVPPVWKWIDLSDASNLSVSSLNDLIDSTY 381
Query: 174 ICLELPSRALIPKALKDFFHYKESLVQFTLLPGFVFSCNSDLNQDGKHALEMLFHLRECC 233
+ L P R + + + + L +FT+ F + LE + +
Sbjct: 382 VPLPFPVRYQLEVCISNGY-----LSEFTMTHEFAVKLAELGEAKARKLLENVAGQKHQY 436
Query: 234 YDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVR 293
YDP+ + + + + + P ++ +TPS VY+ P + +SNR++R
Sbjct: 437 YDPMKIFDLPFVRGIRATKAKIPPYCC------HMRSATITPSTVYYNLPSVDISNRIIR 490
Query: 294 SYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKK 353
Y + D FLR+ F DE KLY +I++ + I+ R+ L NGIVIGD++
Sbjct: 491 RYMEHADRFLRVRFTDE---KLYG-----RINARSDNSNDEIFTRIKRALANGIVIGDRR 542
Query: 354 FETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREA 413
+E LAF NSQ RE+ + FA P+LTAA+IR MG F +I+NV KYAARLGQ F+++R
Sbjct: 543 YEFLAFGNSQFREHGAYFFAPLPDLTAANIRAWMGHFSDIRNVAKYAARLGQCFSTTRAV 602
Query: 414 L----------HVDSN-------IGKISAELAETVAKKCGYAIYT---PSAFQIRYGGYK 453
V+ N +GKIS LA+ + T PSAFQ R GG K
Sbjct: 603 AGCPVQIRNIPDVERNGYTFSDGVGKISRFLAQMAMTELKIKTPTGEPPSAFQFRLGGCK 662
Query: 454 -------------VTLRNNMFKYKSESTSLDILANSKYQREGVARLRL---------DNV 491
+ +R + K+ + LDI+ S++ + R + D V
Sbjct: 663 GMLAVSSDAQPQEIHIRESQNKFPTVHNGLDIIRWSQFSMATLNRQLILVMSTLGVPDEV 722
Query: 492 FERKQREVVARLDAILTDSSKVQEAL-ELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQ 550
F K + ++ LD + S+ E L + + + T + ++++ G++ EPFL+ +
Sbjct: 723 FHAKLKSMLRALDEAMESDSRAIEVLKKYVDPNQTTLTVSQMVSDGFRRSKEPFLTSILA 782
Query: 551 TFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL-------------------------- 584
+ ++ L+ +A+I I G ++G +DE G L
Sbjct: 783 LWRTWHIKYLKEKAKIVIDKGTNLLGVMDETGILKGYFYDKIPKKDASLEQKLAALPEIF 842
Query: 585 ---------------EYGQGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGE 629
E +GL ++A+ P LHPGD+RV+RAV+VP LH + D V+ P G+
Sbjct: 843 LQIPRSEASEDGATYEVIEGLCILARNPSLHPGDIRVVRAVNVPELHSLRDVVVLPQTGD 902
Query: 630 RPHTNECSGSDQDGEIYFVCWDHDRIPPLQF-QPTAYTPAPEKILARDVTIEDVEEYFAD 688
R + CSG D DG+ Y + WD D I F P YT + L DVT+++V +F
Sbjct: 903 RDIASMCSGGDLDGDDYLIIWDQDLIHKDWFLDPMRYTSNKAQDLDHDVTVDEVTSFFVM 962
Query: 689 YIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKI 748
Y+ NDSL I +AHV +A D +C L +L S D++KTG A + L+ +
Sbjct: 963 YMKNDSLPTIAHAHVAWADQLEDGVNEEKCIRLAQLHSDAVDYNKTGRPAIMTRNLQPRR 1022
Query: 749 YPDFMEKQDKT--WYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFK 806
+P FMEK Y S+ I+G LY V + + S + + +EVN
Sbjct: 1023 WPHFMEKPKPKDLIYHSEKILGQLYDAVERV----DFVPSLEMPFDERILNCSIEVN--- 1075
Query: 807 EVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIM---EMAKSFDKKRDLEAISF 863
E F + E+D + +M + IKTE E+ S I+ +M+K + ++ AIS
Sbjct: 1076 EDLYTF-AKNLKVEHDTAIRRIMAQHEIKTEFEIWSTFILNHSQMSKDYKFHEEIGAISA 1134
Query: 864 SVR-SLRKE 871
+ R + RK+
Sbjct: 1135 AHRETFRKQ 1143
>gi|296804254|ref|XP_002842979.1| RNA-directed RNA polymerase Rdp1 [Arthroderma otae CBS 113480]
gi|238845581|gb|EEQ35243.1| RNA-directed RNA polymerase Rdp1 [Arthroderma otae CBS 113480]
Length = 1473
Score = 309 bits (791), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 222/761 (29%), Positives = 362/761 (47%), Gaps = 116/761 (15%)
Query: 198 LVQFTLLPGFVFSCNSDLNQDGKHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSP 257
L ++T+ F S D + LE + + +DP+ ++ V+ + P +
Sbjct: 422 LSEYTITKEFAERLQSLGEDDARDLLEHVSREKAVYHDPMKIFDIEFFSGVTGRKIPKN- 480
Query: 258 AVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYS 317
Y+ VTPS +YF P + SNRV+R Y + D FLR+ F DE
Sbjct: 481 -------CCYMRSATVTPSTIYFHTPTVDTSNRVLRYYIEHADRFLRVRFADEKY----- 528
Query: 318 TVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE 377
+I+S+ ++ RV T+ NGI +GD+ +E LAF NSQ RE+ + FAS P
Sbjct: 529 ---EGRINSSYNNCMDELFTRVKRTMTNGITVGDRHYEFLAFGNSQFREHGAYFFASLPT 585
Query: 378 LTAADIRERMGDFREIKNVTKYAARLGQSFASSR----------EALHVDSN-------I 420
LTAA+IR MG F +IK V K+AARLGQ F++++ E ++ N +
Sbjct: 586 LTAANIRAWMGHFSDIKIVAKHAARLGQCFSATKAVTGCPVIVQEIDEIERNGYIFSDGV 645
Query: 421 GKISAELAETVAKKCGYAIYT---PSAFQIRYGGYK-------------VTLRNNMFKYK 464
G+IS LA+ + + + PS FQ R GG K V +R + +K+
Sbjct: 646 GRISNFLAQMIRTELNIQTPSDEPPSVFQFRLGGCKGILTVSPEAQHREVHIRKSQYKFA 705
Query: 465 SESTSLDILANSKYQREGVARLRL---------DNVFERKQREVVARLDAILTDSSKVQE 515
+ L+++ +SK+ + R + D +F +K V+ + +T+ SK
Sbjct: 706 AVHNGLEVIRHSKFAGAHLNRQLIMVLSALGVTDEIFLKKLHLVLEDMQDAMTNESKAIT 765
Query: 516 ALE-LMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAM 574
L+ + + T +L ++N G++ EPF+ + + + A ++ L+ +A+I I+ G +
Sbjct: 766 LLQKRVDPNQMTFLLAHMVNDGFQASCEPFVKSLLELWRAWDIKYLKEKAKIHIEKGACL 825
Query: 575 MGCLDEKGTL--------------------------------------EYGQGLMVVAKK 596
+GC+DE TL + +G ++A+
Sbjct: 826 LGCIDETATLKGYYEKERPASDATIEERLDNLPEIFVQVFDTEEETKYKIIEGPCILARN 885
Query: 597 PCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIP 656
P LHPGD+RV+RAV+VPALHH+ D ++FP G+R ++ CSG D DG+ Y V WD D IP
Sbjct: 886 PSLHPGDIRVVRAVNVPALHHLKDVIVFPQTGDRDVSSTCSGGDLDGDDYIVIWDPDLIP 945
Query: 657 -PLQF--QPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKA 713
P + +P YT + + L RDVT+ D+ +F Y+ ND L I ++H+ +A D
Sbjct: 946 LPKDWFCEPMDYTASNAQSLTRDVTVNDITSFFVTYMKNDHLPQIAHSHLAFADYVEDGV 1005
Query: 714 MSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDK---TWYESQHIVGNL 770
RC L +L S D++KTG+ A + L + +P FMEK K Y S+ I+G +
Sbjct: 1006 NDERCMQLAQLHSAAVDYNKTGIPANMSRDLIPRKWPHFMEKNHKPKEAQYYSRKILGQI 1065
Query: 771 YREVNGIAPSTTTIKSFAKEGAMQFYDTDMEV-NGFKEVAMQFDGFKYRTEYDNKLGNLM 829
Y V + F K + ++ + V + ++A K + YD + +M
Sbjct: 1066 YDIVERVEFRPKLEAPFDK----RILNSHIPVSDDLIQIAK-----KMKVLYDADMRRIM 1116
Query: 830 DYYGIKTEAEMLSRCIM---EMAKSFDKKRDLEAISFSVRS 867
+ +KTE E+ S + M K + +L IS +R+
Sbjct: 1117 AQHEVKTEFEVWSTFALGHANMTKDYRFHEELGQISSGLRN 1157
>gi|350631624|gb|EHA19995.1| hypothetical protein ASPNIDRAFT_179412 [Aspergillus niger ATCC 1015]
Length = 1201
Score = 308 bits (788), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 243/849 (28%), Positives = 392/849 (46%), Gaps = 130/849 (15%)
Query: 124 VKLCSDLRKFGFFLSYESVDYKLELSNES-----IWQ-IELHRPSGHSVS----IGQSSA 173
+LC+ R + ++ E D ++ + +W+ I+L S SVS + S+
Sbjct: 315 TQLCAIFRDYN--IAIEDTDRFIQWDDRQERVPPVWKWIDLSDASNLSVSSLNDLIDSTY 372
Query: 174 ICLELPSRALIPKALKDFFHYKESLVQFTLLPGFVFSCNSDLNQDGKHALEMLFHLRECC 233
+ L P R + + + + L +FT+ F + LE + +
Sbjct: 373 VPLPFPVRYQLEVCISNGY-----LSEFTMTHEFAVKLAELGEAKARKLLENVAGQKHQY 427
Query: 234 YDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVR 293
YDP+ + + + + + P ++ +TPS VY+ P + +SNR++R
Sbjct: 428 YDPMKIFDLPFVRGIRATKAKIPPYCC------HMRSATITPSTVYYNLPSVDISNRIIR 481
Query: 294 SYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKK 353
Y + D FLR+ F DE KLY +I++ + I+ R+ L NGIVIGD++
Sbjct: 482 RYMEHADRFLRVRFTDE---KLYG-----RINARSDNSNDEIFTRIKRALANGIVIGDRR 533
Query: 354 FETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREA 413
+E LAF NSQ RE+ + FA P+LTAA+IR MG F +I+NV KYAARLGQ F+++R
Sbjct: 534 YEFLAFGNSQFREHGAYFFAPLPDLTAANIRAWMGHFSDIRNVAKYAARLGQCFSTTRAV 593
Query: 414 L----------HVDSN-------IGKISAELAETVAKKCGYAIYT---PSAFQIRYGGYK 453
V+ N +GKIS LA+ + T PSAFQ R GG K
Sbjct: 594 AGCPVQIRNIPDVERNGYTFSDGVGKISRFLAQMAMTELKIKTPTGEPPSAFQFRLGGCK 653
Query: 454 -------------VTLRNNMFKYKSESTSLDILANSKYQREGVARLRL---------DNV 491
+ +R + K+ + L+I+ S++ + R + D V
Sbjct: 654 GMLAVSSDAQPQEIHIRESQNKFPTVHNGLEIIRWSQFSMATLNRQLILVMSTLGVPDEV 713
Query: 492 FERKQREVVARLDAILTDSSKVQEAL-ELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQ 550
F K + ++ LD + S+ E L + + + T + ++++ G++ EPFL+ +
Sbjct: 714 FHAKLKSMLRALDEAMESDSRAIEVLKKYVDPNQTTLTVSQMVSDGFRRSKEPFLTSILA 773
Query: 551 TFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL-------------------------- 584
+ ++ L+ +A+I I G ++G +DE G L
Sbjct: 774 LWRTWHIKYLKEKAKIVIDKGTNLLGVMDETGILKGYFYDKIPKKDASLEQKLAALPEIF 833
Query: 585 ---------------EYGQGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGE 629
E +GL ++A+ P LHPGD+RV+RAV+VP LH + D V+ P G+
Sbjct: 834 LQIPRSEASEDGATYEVIEGLCILARNPSLHPGDIRVVRAVNVPELHSLRDVVVLPQTGD 893
Query: 630 RPHTNECSGSDQDGEIYFVCWDHDRIPPLQF-QPTAYTPAPEKILARDVTIEDVEEYFAD 688
R + CSG D DG+ Y + WD D I F P YT + L DVT+++V +F
Sbjct: 894 RDIASMCSGGDLDGDDYLIIWDQDLIHKDWFLDPMRYTSNKAQDLDHDVTVDEVTSFFVM 953
Query: 689 YIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKI 748
Y+ NDSL I +AHV +A D +C L +L S D++KTG A + L+ +
Sbjct: 954 YMKNDSLPTIAHAHVAWADQLEDGVNEEKCIRLAQLHSDAVDYNKTGRPAIMTRNLQPRR 1013
Query: 749 YPDFMEKQDKT--WYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFK 806
+P FMEK Y S+ I+G LY V + + S + + +EVN
Sbjct: 1014 WPHFMEKPKPKDLIYHSEKILGQLYDAVERV----DFVPSLEMPFDERILNCSIEVN--- 1066
Query: 807 EVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIM---EMAKSFDKKRDLEAISF 863
E F + E+D + +M + IKTE E+ S I+ +M+K + ++ AIS
Sbjct: 1067 EDLYTF-AKNLKVEHDTAIRRIMAQHEIKTEFEIWSTFILNHSQMSKDYKFHEEIGAISA 1125
Query: 864 SVR-SLRKE 871
+ R + RK+
Sbjct: 1126 AHRETFRKQ 1134
>gi|212544602|ref|XP_002152455.1| RNA-directed RNA polymerase (Sad-1), putative [Talaromyces marneffei
ATCC 18224]
gi|210065424|gb|EEA19518.1| RNA-directed RNA polymerase (Sad-1), putative [Talaromyces marneffei
ATCC 18224]
Length = 1359
Score = 302 bits (773), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 205/663 (30%), Positives = 327/663 (49%), Gaps = 104/663 (15%)
Query: 273 VTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERR 332
VTPS +Y+ P + ++NRV+R Y + D FLR+ F DE +I+ST+ +
Sbjct: 520 VTPSTIYWNTPSMEITNRVLRRYSEHADRFLRVRFKDEKF--------EGRINSTHHDTM 571
Query: 333 TRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFRE 392
I+ R+ T+ NGI++GD+K+E LAF NSQ RE+ + FAS +TAA+IR MG+F E
Sbjct: 572 DEIFARIKRTMSNGIILGDRKYEFLAFGNSQFREHGAYFFASEAHVTAANIRAWMGEFSE 631
Query: 393 IKNVTKYAARLGQSFASSRE-----------------ALHVDSNIGKISAELAETVAKKC 435
I+N+ KYAARLGQ F+++R +G+IS LA+ ++
Sbjct: 632 IRNIAKYAARLGQCFSTTRAINTCTVELKRIPDVERGGYTFSDGVGRISRFLAQMTQQEL 691
Query: 436 GYAI---YTPSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLDILANSKYQ 479
PSA+Q R GG K + +R + K+ + L+I+ S++
Sbjct: 692 KIKTPDKEPPSAYQFRLGGCKGMLVLSDVPRGREIQIRPSQEKFPANHQGLEIIRWSQFS 751
Query: 480 REGVARLRL---------DNVFERKQREVVARLDAILTDSSKVQEALE-LMSSAENTNVL 529
+ R + D VF K R +V+ L+ D L+ + E T VL
Sbjct: 752 SATLNRQLIAVLSSLGVSDEVFHEKLRRMVSNLEEATRDDRAAMRLLQKYIDPNEMTLVL 811
Query: 530 KELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLE---- 585
++++ G+ +PF++ + + A ++ L+ +A+I I++G ++G LDE TL+
Sbjct: 812 SKMVSDGFLQSRDPFVTSIITLWKAWSIKYLKEKAKITIEDGACLLGVLDETATLQGFSY 871
Query: 586 ---------------------------------YGQGLMVVAKKPCLHPGDMRVLRAVDV 612
+G+ ++A+ P LHPGD+RV+RAVD
Sbjct: 872 EKVKKPHLSRESKLDALPEIFLQVYRADEKKYCVIKGVCILARNPSLHPGDIRVVRAVDR 931
Query: 613 PALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQ-PTAYTPAPEK 671
P L H+ D V+ P G+R + CSG D DG+ Y V WD D +P F+ P Y P
Sbjct: 932 PELAHLKDVVVLPQLGDRDIASMCSGGDLDGDDYLVIWDKDLVPNQWFRAPMDYAPIKGV 991
Query: 672 ILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDF 731
L R VT+ D+ +F +Y+ NDSL I +AH+ ++ + S +C L +L S D+
Sbjct: 992 NLDRSVTVNDITTFFVNYMKNDSLPRIAHAHLAWSDFLMNGVESPKCIRLAQLHSNAVDY 1051
Query: 732 SKTGVAATIPSRLRVKIYPDFMEK----QDKTWYESQHIVGNLYREVNGIAPSTTTIKSF 787
+KTG A +P LR + +P FMEK +D+T Y+S+ I+G LY V+ + F
Sbjct: 1052 NKTGEPAYLPRDLRPRRWPHFMEKNYKPKDQT-YQSKKILGQLYDAVDRV--------DF 1102
Query: 788 AKEGAMQFYDTDMEVN-GFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIM 846
+ + F +E + MQF + + +YD L +M + I+TE E+ S ++
Sbjct: 1103 HPDFDVPFDKRVLESGVSVTDNIMQF-ARELKVDYDLALKRIMAQHEIRTEFEVWSTFVL 1161
Query: 847 EMA 849
A
Sbjct: 1162 SHA 1164
>gi|402075074|gb|EJT70545.1| RNA-dependent RNA polymerase 1 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1551
Score = 300 bits (768), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 222/716 (31%), Positives = 339/716 (47%), Gaps = 114/716 (15%)
Query: 217 QDGKHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPS 276
++ + LE R YDP+ L+E + P L I + K +VTPS
Sbjct: 381 REARMVLEYPIDRRVKFYDPMLLLQEAREARYAPDVHPE----LLPEYCILMRKAIVTPS 436
Query: 277 KVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDE-DLGKLYSTVLSPQISSTNGERRTRI 335
VY P + +NRV+R Y D D F+R+ F DE G++ +T Q N E +
Sbjct: 437 TVYLNSPTVETTNRVLRHYYDFRDRFMRIQFTDELHRGRINAT----QDQRVNDE----L 488
Query: 336 YERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKN 395
Y RV LRNGI IGD+ ++ LAF NSQ RE++ + FA+ ++T IR MGDFR I+N
Sbjct: 489 YTRVYRVLRNGIFIGDRHYQFLAFGNSQMRESSAYFFAAVGDVTCDSIRAWMGDFRHIRN 548
Query: 396 VTKYAARLGQSFASSREALHVDSN---------------------IGKISAELAETVAKK 434
V KYAARLGQ F+++R ++DS +GKIS + ++++
Sbjct: 549 VGKYAARLGQCFSTTR---NIDSTSVQWIKSIPDIEENGYCFSDGVGKISQFWSTRISQR 605
Query: 435 CGYAIYTPSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLDILANSKYQRE 481
Y PSAFQ R GG K + +R + K+++E + L+++ S+Y
Sbjct: 606 LSLNTY-PSAFQFRMGGRKGILTVWPDVKGMDIHVRPSQEKFQTEHSRLEVIRCSQYAVA 664
Query: 482 GVARLRL---------DNVFERKQREVVARLDAILTDSSKVQEALEL-MSSAENTNVLKE 531
+ R + D+VFE + +A D + D L L + + T L +
Sbjct: 665 TLNRQTIPILSALGIEDHVFEDMLADQLASYDKAMEDPVAAMSLLNLYVDENQMTKALSQ 724
Query: 532 LLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL------- 584
L+ G EPF+ M + + ++ L+ +ARI ++ G ++GC+DE G L
Sbjct: 725 LIMAGLMKSQEPFVWTMLRLWRTWSIKSLKEKARIVVEKGAFVLGCVDETGKLRGHYARV 784
Query: 585 -------------EYGQ-----------------GLMVVAKKPCLHPGDMRVLRAVDVPA 614
E Q G VV + P LHPGD+R++ AVDVP
Sbjct: 785 KTHPDQRPRLNHSELPQIFLQVPDGPNGLYKVVTGTCVVGRNPSLHPGDLRIVEAVDVPE 844
Query: 615 LHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ---FQPTAYTPAPEK 671
L H+ D V+FP G+R + CSG D DG+ YF+ WD +PP + + P Y
Sbjct: 845 LRHLRDVVVFPKSGDRDIPSMCSGGDLDGDDYFIIWDERLVPPPEERSYPPMNYEAEKSL 904
Query: 672 ILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDF 731
RDVT +D+ +F ++ N SL I +AH+ A+++ S C +L +L S D+
Sbjct: 905 DPDRDVTADDLRRFFVLHMKNHSLPTIAHAHL--AHADCLGVKSEVCIELARLHSQAVDY 962
Query: 732 SKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEG 791
KTG+ A + L K YP FMEK + Y S I+G LY +V+ +F
Sbjct: 963 PKTGIPAVVRRGLIPKQYPHFMEKSTRRTYHSGRILGKLYDKVHQ--------ATFDPAY 1014
Query: 792 AMQFYDTDMEVNGFK-EVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIM 846
M F D+ + +N +K + A + +T+YD + +M I TE E+ S ++
Sbjct: 1015 EMVF-DSRI-LNKYKLDAATLRKARQMKTKYDQAMRRIMGQGDIGTEFEVFSSFVL 1068
>gi|296420862|ref|XP_002839987.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636195|emb|CAZ84178.1| unnamed protein product [Tuber melanosporum]
Length = 1542
Score = 300 bits (767), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 207/663 (31%), Positives = 316/663 (47%), Gaps = 101/663 (15%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
+ K VTPS VYF P + ++NRVVR Y + ID FLR+ FVDE +I+ST
Sbjct: 655 LRKANVTPSTVYFTTPTVEITNRVVRQYSEHIDRFLRVQFVDEKS--------QGRINST 706
Query: 328 NGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERM 387
+ + ++ RV + L +GI IGD+KFE LAF NSQ RE+ + FAS L+AADIR M
Sbjct: 707 DKKTMHEVFTRVKAALDHGITIGDRKFEFLAFGNSQIREHGAYFFASDDHLSAADIRAWM 766
Query: 388 GDFREIKNVTKYAARLGQSFASSR------------------EALHVDSNIGKISAELAE 429
G F EI+ V K+AARLGQ F+++R E + +GKIS LA
Sbjct: 767 GSFSEIRIVAKHAARLGQCFSTTRAINGVRVDVRTTEDIVNAEGYNFSDGVGKISEFLAR 826
Query: 430 TVAKKCGYAIY----TPSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLDI 472
+ + + PS FQ R GG K V +R + K+++ L++
Sbjct: 827 LITTELRLRLVDKEPVPSCFQFRLGGRKGVLAVSPDANHREVYIRPSQLKFEARHNILEV 886
Query: 473 LANSKYQREGVARLRL---------DNVFERKQREVVARLDAILTDSS-KVQEALELMSS 522
+ SK+ + R + D+ FE K + ++ + + D V+ +
Sbjct: 887 IRWSKFATAALNRQLIIVLTSLGAPDHYFEDKLQFMLKSYEVAMVDPGVAVRLLCRNVDP 946
Query: 523 AENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKG 582
E+T + ++ G+ EPF+ + + + A + L+ +A+I I+ G ++G +DE G
Sbjct: 947 NESTLAIAAMIRAGFMDRREPFVMSLLKLWRAWTIKYLKEKAKIMIEEGAFVLGVVDETG 1006
Query: 583 TLE---YGQ-----------------------------------GLMVVAKKPCLHPGDM 604
TL+ Y Q G V+A+ P LHPGD+
Sbjct: 1007 TLDGYYYSQDEGSTEDADNPETSLPQIFLQVTDPDRPGESRIIEGPCVIARNPSLHPGDV 1066
Query: 605 RVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPL-QFQPT 663
R + AV+ LHH+ + V+F KG+R N SG D DG+ Y + WD + ++P
Sbjct: 1067 RKVMAVNAKELHHLRNVVVFSQKGDRDLPNMLSGGDLDGDDYIIIWDKKLTSCVNNYEPM 1126
Query: 664 AYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVK 723
Y+ + LARDV I D+ ++F +Y+ ND LG I NAH+ +A + S+ C L
Sbjct: 1127 NYSAQTPRELARDVEIGDITKFFVNYMKNDKLGTIANAHLAWADKRDEGVKSDECFRLAI 1186
Query: 724 LSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTT 783
L S D+ K+G A +P LR K +P FMEK+ + Y S I+G LY V+ I
Sbjct: 1187 LHSHAVDYVKSGEPAIMPPELRRKTFPHFMEKKPEETYRSDKILGVLYDSVSKI------ 1240
Query: 784 IKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSR 843
F ++F D + E ++ + YD + +M + I TE E++S
Sbjct: 1241 --DFVPALELEFDDRILNAYTLNEEILEV-ARAIKIRYDAAMRRIMAQHDIHTEFEVISI 1297
Query: 844 CIM 846
IM
Sbjct: 1298 FIM 1300
>gi|414877742|tpg|DAA54873.1| TPA: hypothetical protein ZEAMMB73_768916 [Zea mays]
Length = 937
Score = 297 bits (761), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 187/511 (36%), Positives = 267/511 (52%), Gaps = 85/511 (16%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLS------ 321
V ++++TP+K Y PE+ SNRV+R Y + D FLR++F+DE + L S VL+
Sbjct: 425 VRRLVITPTKAYCMPPEVERSNRVIRHYSEVSDRFLRVTFMDERMQMLNSNVLNFSAAQI 484
Query: 322 -PQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTA 380
+ S + +T +Y+RV + L G + +K+ LAFS++Q R+ + W FA T
Sbjct: 485 VKDLMSNSFLHKTTVYKRVKTFLTEGFHMCGRKYSFLAFSSNQLRDRSAWFFAEDRTTTV 544
Query: 381 ADIRERMGDFREIKNVTKYAARLGQSFASSREAL------------HVDSN-------IG 421
IR+ MG F KNV K+AAR+GQ F+S+ + V+ N IG
Sbjct: 545 ETIRKWMGRFTS-KNVAKHAARMGQCFSSTYATVVLQPHEVNECLDEVEHNGYIFSDGIG 603
Query: 422 KISAELAETVAKKCGYAIYTPSAFQIRYGGYK--------------VTLRNNMFKYKSES 467
KI+ +LA VA+K PSA+QIRY G+K ++LR +M K++S
Sbjct: 604 KITCDLALEVAQKLQLTDNPPSAYQIRYAGFKGVISVWEGKNDGIRLSLRPSMHKFESNH 663
Query: 468 TSLDILANSKYQREGVARLRL---------DNVFERKQREVVARLDAILTDSSKVQEALE 518
T L++++ +K+Q + R + D +F + Q +++ L+ IL+DS V +
Sbjct: 664 TVLEVVSWTKFQPGFLNRQIITLLSSLNVPDAIFAQMQEAMLSNLNNILSDSD-VAFDIV 722
Query: 519 LMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCL 578
S AE +L+ G P EP L M +S LL L + RIF+ G+ +MGCL
Sbjct: 723 TASCAEQGTTAALMLSAGISPGTEPHLKAMLLAIRSSQLLGLLEKTRIFVPKGRWLMGCL 782
Query: 579 DEKGTLEYGQ--------------------------------GLMVVAKKPCLHPGDMRV 606
DE G LE GQ G +V+AK PCLHPGD+R+
Sbjct: 783 DELGILEQGQCFIRASSPSLNNCLVKYGSRLSAANTNAETILGTIVMAKNPCLHPGDVRI 842
Query: 607 LRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ--FQPTA 664
L AVDVP LHH+VDC++FP KGERPH NE SGSD DG++YFV WD + IPP + + P
Sbjct: 843 LEAVDVPELHHLVDCLVFPKKGERPHANEASGSDLDGDLYFVTWDENLIPPGKKSWNPMD 902
Query: 665 YTPAPEKILARDVTIEDVEEYFADYIVNDSL 695
Y+PA K L R V+ YIV SL
Sbjct: 903 YSPAEAKQLPRAVSQHFWTMSLYGYIVFYSL 933
>gi|398388269|ref|XP_003847596.1| RNA-directed RNA polymerase, partial [Zymoseptoria tritici IPO323]
gi|339467469|gb|EGP82572.1| RNA-directed RNA polymerase [Zymoseptoria tritici IPO323]
Length = 959
Score = 296 bits (759), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 206/677 (30%), Positives = 316/677 (46%), Gaps = 113/677 (16%)
Query: 273 VTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERR 332
+TP+ +YF P + SNRVVR+Y D F+R+ F DE Q+ S +G+
Sbjct: 237 ITPTTIYFATPVLETSNRVVRNYKKYEDRFMRVKFTDEKHKG--------QLQSQDGQAM 288
Query: 333 TRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFRE 392
++ R+ + +GI + D+ +E LAF N+Q RE+ + FAS P+L A IR+ MG+F +
Sbjct: 289 NEVFSRIKQAMTHGIRVADRHYEFLAFGNAQFREHGAYFFASTPDLNANMIRQWMGNFTQ 348
Query: 393 IKNVTKYAARLGQSFASSREALH---------VDSN-------IGKISAELAETVAKKCG 436
IKNV KY +RLGQ + ++R H V+ N +GKIS LA VA
Sbjct: 349 IKNVAKYISRLGQCYTTTRAIPHSVNVERIPDVERNGYCFTDGVGKISPLLARMVADHFR 408
Query: 437 YAIYTPSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLDILANSKYQREGV 483
PS +Q R G K V +R + K+ +E L+I S++ +
Sbjct: 409 LD-NCPSVYQFRMAGCKGVLAVDPSLKGMTVQIRPSQEKFPAEFHGLEICKMSQFSAANL 467
Query: 484 -ARLRL--------DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTN----VLK 530
+L L DNVF K R+++A L +TD + AL+L+ + N L
Sbjct: 468 NVQLILVMSSLGVPDNVFVNKYRDMLADLALAMTDE---EMALKLLQKNIDFNQMTIYLA 524
Query: 531 ELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLE----- 585
++ G+ +PF + + + NL L+ +AR+F+ G + G DE GTL+
Sbjct: 525 TIILDGFMATKDPFTISCLRLWRSWNLKYLKEKARVFVDQGAFVFGVTDETGTLQGQFDG 584
Query: 586 -------------------------------YGQGLMVVAKKPCLHPGDMRVLRAVDVPA 614
QG + A+ P LHPGD+R++ AVDVPA
Sbjct: 585 FKTDEGDMAVPPTLPQIFLQIPDPNAKGGYTVIQGPCLFARNPSLHPGDIRMVEAVDVPA 644
Query: 615 LHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILA 674
LHH+ DCV+ P G+R N CSG D DG+ Y +CWD D PP+ P
Sbjct: 645 LHHLKDCVVLPQTGDRDLANMCSGGDLDGDDYLICWDADLFPPVS------DTGP----- 693
Query: 675 RDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKT 734
VT++D+ +F +YI N+ LG I + H +A E D + +C L L S+ D+ KT
Sbjct: 694 --VTVDDMTSFFVNYIKNNKLGQIASHHRFWADKEDDGVKNEKCLQLANLHSLAVDYVKT 751
Query: 735 GVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQ 794
GV AT+P L+VK P + E + ++ Y S+ ++G LY EV + +F +
Sbjct: 752 GVPATLPVELKVKARPHWAEARGQS-YTSRKVLGQLYDEVK--------LDNFQPAWELP 802
Query: 795 FYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDK 854
F D + + + + EYD + +M YGI E E+ + + +
Sbjct: 803 F-DARILTADTPTPELIAGATEVKAEYDETMRRIMKQYGITNEFEVFTTFVQSHHNDIND 861
Query: 855 KRDLEAISFSVRSLRKE 871
+ E I +LR +
Sbjct: 862 YKFYEKIGEVSMNLRDQ 878
>gi|449301850|gb|EMC97859.1| hypothetical protein BAUCODRAFT_67567, partial [Baudoinia
compniacensis UAMH 10762]
Length = 1035
Score = 293 bits (751), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 201/688 (29%), Positives = 333/688 (48%), Gaps = 105/688 (15%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDL-GKLYSTVLSPQISS 326
+ ++TP+ + P + +NR++R Y +D+FLR+ F DE GK + +
Sbjct: 286 IRAAVITPTSLIISTPVVETTNRIIRKYEHIVDHFLRVKFTDERYKGK---------VMN 336
Query: 327 TNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRER 386
+ + I+ RV TL+NGI I + ++ LAF NSQ REN + FAS P+L+AADIR
Sbjct: 337 NSDNNQDEIFTRVKRTLQNGIQIAGRHYDFLAFGNSQFRENGAYFFASTPDLSAADIRVA 396
Query: 387 MGDFREIKNVTKYAARLGQSFASSREA---LHVDS-------------NIGKISAELAET 430
MG F I V KYA+RLGQ F+++R + VD+ +GK+S +A+
Sbjct: 397 MGTFTHITTVAKYASRLGQCFSTTRGLSYRVRVDALADITRNGYTFTDGVGKVSPFIAQM 456
Query: 431 VAKKCGYA---IYTPSAFQIRYGGYK--------VTLRNNM--------FKYKSESTSLD 471
VA+ G+ + PS Q R GGYK +T ++NM K+ + L+
Sbjct: 457 VAQTFGFPNAFVDYPSVIQFRLGGYKGVLAVDPTLTGKDNMVIQTRPSQMKFPAVYHGLE 516
Query: 472 ILANSKYQREGV---------ARLRLDNVFERKQREVVARLDAILTDSSKVQEAL-ELMS 521
I S++ + AR D VF K ++ + L + D K ++ L + +
Sbjct: 517 ICRLSQFTAAYLNQQIILVLSARGVEDKVFVVKVQQALKDLQDAMIDEDKAKDQLCKKID 576
Query: 522 SAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDE- 580
T VL ++++ G+ +PF+ + + + + L+ +ARIF+ G ++GC DE
Sbjct: 577 YNHTTLVLAQMIDDGFMAVRDPFMMSCMRLWRSWMVKYLKEKARIFVDEGAFVLGCTDET 636
Query: 581 ----------------------------------KGTLEYGQGLMVVAKKPCLHPGDMRV 606
KG+ +G+ ++A+ P LHPGD+RV
Sbjct: 637 TTLRGDFNADNHTVDLTDATPLPEIFLQIPDVAKKGSYVAVKGVCLLARNPSLHPGDIRV 696
Query: 607 LRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYT 666
+RA+DVPALHH+ +CV+ P G+R N CSG D DG+ + V WD IPP +
Sbjct: 697 VRAIDVPALHHLKNCVVLPQTGDRDLANMCSGGDLDGDDFLVIWDKQLIPPEWYHSPMDY 756
Query: 667 PAPEKILAR-DVTIEDVEEYFADYIVNDSLGIICNAHVVYA---YSEPDKAMSNRCPDLV 722
APE + A +T++ + +F Y+ ++++GII AH A +SE K +C L
Sbjct: 757 QAPEPVKAELPITVDAITSFFVTYMKHNNVGIIACAHRYTADDGFSEGVKDF--KCLQLA 814
Query: 723 KLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTT 782
+L S+ D+ KTGV A +P+ LRV+ YP + E+ K+ Y S+ ++G LY V I
Sbjct: 815 QLHSMAVDYMKTGVPAVMPNELRVRKYPHWAERPGKSSYHSRRVLGQLYDAVQRI----- 869
Query: 783 TIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLS 842
+ F + + V +Q + + YD + +M YG++ E E+ +
Sbjct: 870 ---DLQPAWDLPFDERILSAYQLDAVLLQ-AASEVKVRYDEAVQRIMAQYGVENEFEIWT 925
Query: 843 RCIMEMAKSFDKKRDLEAISFSVRSLRK 870
+ + + + E + +V +L++
Sbjct: 926 TFVRSHNQDENDYKFTEKLGETVTTLKQ 953
>gi|378728086|gb|EHY54545.1| RNA-directed RNA polymerase [Exophiala dermatitidis NIH/UT8656]
Length = 1461
Score = 293 bits (750), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 222/742 (29%), Positives = 351/742 (47%), Gaps = 120/742 (16%)
Query: 220 KHALEMLFHL---RECCYDPVSWLRE-QYRKHVSSGQFPTSPAVALDGGLIYVNKI---L 272
+ A +ML H+ +E YDP++ ++ +Y K V + PT+ N+I
Sbjct: 414 QRAKQMLIHVDSYQERIYDPMTIFKDLRYSKPVRARALPTN-----------CNEIYHAT 462
Query: 273 VTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDL---GKLYSTVLSPQISSTNG 329
VT S V F P + ++NR++R Y D FLR+ F D+ +LY +TNG
Sbjct: 463 VTASGVLFHTPSVEITNRIIRKYERYNDRFLRVRFEDDSYRGKSRLYP--------ATNG 514
Query: 330 ERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGD 389
R ++ERV TL++GI+I D+ +E LA+ NSQ RE+ + FAS ++T IR MG
Sbjct: 515 RMRL-LFERVRRTLKHGIIIADRHYEFLAWGNSQLREHGAYFFASTHDITPDTIRRSMGI 573
Query: 390 FREIKNVTKYAARLGQSFASSR-------EALH---VD----------SNIGKISAELAE 429
F K V K AAR+GQ F+++R A H +D +GKIS A+
Sbjct: 574 FDSEKVVAKRAARMGQCFSTTRAVSVLSKRAFHKRLIDDVIINGHTFTDGVGKISMLGAQ 633
Query: 430 TVAKKCGYAIYTPSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLDILANS 476
V PSA+Q R GG K + +R + +K++SES L+I+ S
Sbjct: 634 LVCSSLKLRGKVPSAYQFRLGGCKGVLALDPLLPGVDIKIRPSQYKFQSESDELEIIRVS 693
Query: 477 KYQREGVARLRL---------DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTN 527
++ + + R + D VF +KQ + + LD + D + AL T
Sbjct: 694 EFWQPFLNRQLILVLSDLGVPDEVFLQKQEDCIKALDRAMVDDTAALRALRDNVDPNLTT 753
Query: 528 V-LKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL-- 584
+ + ++ G++ E F++ + + + A L L+ +A+I + G ++G +DE L
Sbjct: 754 LSIAAMIEDGFRQSNEIFVTSLLRLYRAWTLKYLKEKAKIPVPQGAFVLGVVDETNKLRG 813
Query: 585 ---------------------------EYGQ-----GLMVVAKKPCLHPGDMRVLRAVDV 612
GQ G+ ++A+ P LH GD+RV+ AVD+
Sbjct: 814 HEPFVSPGSEPPTLQDLPQIFMQYTDQHTGQRRIVEGVCIIARNPSLHRGDIRVVHAVDI 873
Query: 613 PALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ---FQPTAYTPAP 669
PALHH+ D V+ P +GER + CSG D DG+ Y V WD D IPP + +P +Y AP
Sbjct: 874 PALHHLCDVVVMPIQGERDLPSMCSGGDLDGDDYVVIWDPDLIPPQEEWFVEPFSYA-AP 932
Query: 670 EKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVG 729
+ + ++T +D+ +F DY+ ND LG I +AH+ A + S+ C LV L S
Sbjct: 933 KPVGKDEITTDDIINFFCDYMQNDFLGRIAHAHLAAADYLDEGIRSDVCLSLVNLHSKAV 992
Query: 730 DFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAK 789
D+ KTGV A +P L +P FMEK+ Y+S I+G LY V +A SF +
Sbjct: 993 DYPKTGVPAEMPRELERNKWPHFMEKRRAPQYKSHKILGQLYDAVERVAFEPNWEGSFDQ 1052
Query: 790 EGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMA 849
+ V + + + YD + +M + I TE E+ S ++ +
Sbjct: 1053 RILKHQLPPESVVEEVR---------RLKKSYDEGMRRIMAQHQINTEFEVWSTFVLHHS 1103
Query: 850 KSFDKKRDLEAISFSVRSLRKE 871
K+ + E I R+L+++
Sbjct: 1104 KAARDFKFHEEIGQHARTLKEQ 1125
>gi|242812975|ref|XP_002486072.1| RNA-directed RNA polymerase (Sad-1), putative [Talaromyces stipitatus
ATCC 10500]
gi|218714411|gb|EED13834.1| RNA-directed RNA polymerase (Sad-1), putative [Talaromyces stipitatus
ATCC 10500]
Length = 1341
Score = 293 bits (750), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 209/689 (30%), Positives = 337/689 (48%), Gaps = 109/689 (15%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
V VTPS +Y+ P + ++NRV+R Y + D FLR+ F DE +I+ST
Sbjct: 501 VRTATVTPSMIYWNTPSMEITNRVLRRYSEHADRFLRVRFKDEKF--------EGRINST 552
Query: 328 NGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERM 387
+ + I+ R+ T+ NGIV+GD+K+E LAF NSQ RE+ + FAS +TA++IR M
Sbjct: 553 HHDTMDEIFSRIKRTMTNGIVLGDRKYEFLAFGNSQFREHGAYFFASDAHVTASNIRAWM 612
Query: 388 GDFREIKNVTKYAARLGQSFASSRE-----------------ALHVDSNIGKISAELAET 430
G+F +IKNV KYAARLGQ F+++R +G+IS LA+
Sbjct: 613 GEFSDIKNVAKYAARLGQCFSTTRAINTCRVELKRIPDVERGPYTFSDGVGRISRFLAQM 672
Query: 431 VAKKCGYAIY---TPSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLDILA 474
++ PSA+Q R GG K + +R + K+ + L+I+
Sbjct: 673 TQQELNIRTADQEPPSAYQFRLGGCKGMLVLSDEPRGREIEIRPSQEKFPANHQGLEIIR 732
Query: 475 NSKYQREGVARLRL---------DNVFERKQREVVARL-DAILTDSSKVQEALELMSSAE 524
S++ + R + D VF K + +V+ L +A D + + + + E
Sbjct: 733 WSQFSSATLNRQLIAVLSSLGIEDKVFHGKLQRMVSNLEEATHYDRAAMHLLQKYIDPNE 792
Query: 525 NTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL 584
T V+ ++++ G+ +PF++ + + A + L+ +A+I I++G ++G +DE TL
Sbjct: 793 MTLVISKIVSDGFLQARDPFITSVITLWKAWQIKYLKEKAKITIEDGACVLGVMDETATL 852
Query: 585 -----------------------------------EYG--QGLMVVAKKPCLHPGDMRVL 607
+YG +G+ ++A+ P LHPGD+RV+
Sbjct: 853 KGFSYENVEKVHLSRDSKLDALPEIFLQVYRADEKKYGVVEGVCILARNPSLHPGDIRVV 912
Query: 608 RAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQ-PTAYT 666
RAV+ L H+ D V+ P G+R + CSG D DG+ Y V WD D IP F+ P YT
Sbjct: 913 RAVNRSELAHLKDVVVLPQVGDRDIASMCSGGDLDGDDYLVIWDQDLIPSQWFRTPMDYT 972
Query: 667 PAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSS 726
L R VT+ D+ +F +Y+ NDSL I +AH+ +A D S +C L +L S
Sbjct: 973 AIKGVNLNRAVTVNDITTFFVNYMKNDSLPKIAHAHMAWADYLEDGVESAKCIRLAQLHS 1032
Query: 727 IVGDFSKTGVAATIPSRLRVKIYPDFMEKQDK---TWYESQHIVGNLYREVNGIAPSTTT 783
D++KTG A +P LR + +P FMEK K Y S+ I+G LY V+ +
Sbjct: 1033 NAVDYNKTGEPAYLPRDLRPRKWPHFMEKNYKPKDQIYHSEKILGQLYDAVDRVDFHPDF 1092
Query: 784 IKSFAK---EGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEM 840
+ F K E ++ TD + KE+ + +YD L +M + I+TE E+
Sbjct: 1093 DRPFDKRVLEAGIEV--TDEILQFVKEL---------KVDYDLSLKRIMAQHEIRTEFEI 1141
Query: 841 LSRCIM---EMAKSFDKKRDLEAISFSVR 866
S ++ ++K + +L I+ +++
Sbjct: 1142 WSTFVLGHANLSKDYKFHEELGGITKAIK 1170
>gi|451852221|gb|EMD65516.1| hypothetical protein COCSADRAFT_354694 [Cochliobolus sativus ND90Pr]
Length = 1365
Score = 289 bits (740), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 206/662 (31%), Positives = 326/662 (49%), Gaps = 105/662 (15%)
Query: 271 ILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGE 330
+ +TP+ ++ P + SNR++R Y + D F+R+ F DE Q+ +
Sbjct: 484 VTITPTMMHVATPVMETSNRIIRKYEADADRFIRVRFTDEKS--------EGQLRNQPNG 535
Query: 331 RRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDF 390
R +++RV ++NGIV+ + +E LAF NSQ REN + +A +A DIR +G+F
Sbjct: 536 RAEAVFDRVFRAMKNGIVVAGRYYEFLAFGNSQFRENGAYFYAPTASKSANDIRMSLGEF 595
Query: 391 REIKNVTKYAARLGQSFASSRE---------ALHVDSN-------IGKISAELAETVAKK 434
I+ V+K+AARLGQ F+++R V+ N +GK+S LA+ A++
Sbjct: 596 DHIRTVSKFAARLGQCFSTTRAMGVTVKLVIVPDVERNGFVFTDGVGKLSPFLAQMAAQE 655
Query: 435 CGYA-IYT--PSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLDILANSK- 477
G +T PS FQ R GG K V +R + +K+++ T L+I+ +S
Sbjct: 656 LGLTNAFTDPPSLFQFRLGGSKGVLALDPNLNGNEVHIRRSQYKFRAPHTGLEIIRSSSF 715
Query: 478 ----YQREGVARLRL----DNVFERKQREVVARLDAILTDS-SKVQEALELMSSAENTNV 528
+ R+ + L D VF RKQ +++ + +TD +Q+ + + + T
Sbjct: 716 ATPYFNRQIILVLSYLGVQDAVFLRKQEDMMNDYSSAMTDEIIALQKLRKNIDINQITLT 775
Query: 529 LKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLE--- 585
+ ++ G+ EPF+ + + A + L+ +ARI I NG ++GC+DE GTL+
Sbjct: 776 MAAMVLDGFMGSREPFIMSLLALWRACTIKNLKEKARIAIDNGAFLLGCVDETGTLKGHL 835
Query: 586 -----------------------------------YGQGLMVVAKKPCLHPGDMRVLRAV 610
+G+ ++A+ P LHPGD+RV+RAV
Sbjct: 836 NDPQSRRDATRDEKLATLPEIFLRVSDPESKGHYIIIEGICILARNPSLHPGDVRVVRAV 895
Query: 611 DVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTA-YTPAP 669
+VPALHH+ + V+FP G+R N CSG D DG+ Y V WD D +P L +P +T P
Sbjct: 896 NVPALHHLKNVVVFPQTGDRDLANMCSGGDLDGDDYMVLWDRDLVPELINEPPMDFT--P 953
Query: 670 EKILARD--VTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSI 727
EK L D ++ D+ ++F +YI ND+LG I +AH+ A C +L +L S
Sbjct: 954 EKPLEIDGPISAMDMSKFFVNYIKNDALGPIAHAHLAQADFNEKCIGDAICLELAELHSR 1013
Query: 728 VGDFSKTGVAATIPSRLRVKIYPDFMEKQ---DKTWYESQHIVGNLYREVNGIAPSTTTI 784
DF K+G+ A + LR + +P FMEK+ Y S+ I+G LY EV I
Sbjct: 1014 AVDFPKSGIPAEMKRELRPRKWPHFMEKKYLSPHQIYNSKKILGLLYDEVKLIDFEPQWE 1073
Query: 785 KSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRC 844
F K ++ +D D E+ K +++ YD L LM +GIKTE E S
Sbjct: 1074 NPFDKR-ILEAFDLDQELLD-KAASLKL-------SYDEALRRLMAKHGIKTEFEAWSVF 1124
Query: 845 IM 846
++
Sbjct: 1125 VL 1126
>gi|226490831|ref|NP_001142097.1| uncharacterized protein LOC100274261 [Zea mays]
gi|194707104|gb|ACF87636.1| unknown [Zea mays]
Length = 552
Score = 288 bits (738), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 171/468 (36%), Positives = 251/468 (53%), Gaps = 49/468 (10%)
Query: 460 MFKYKSESTSLDILANSKYQ-----REGVARLR----LDNVFERKQREVVARLDAILTDS 510
M K++S T L++++ +K+Q R+ + L D +F + Q +++ L+ IL+DS
Sbjct: 1 MHKFESNHTVLEVVSWTKFQPGFLNRQIITLLSSLNVPDAIFAQMQEAMLSNLNNILSDS 60
Query: 511 SKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQN 570
V + S AE +L+ G P EP L M +S LL L + RIF+
Sbjct: 61 D-VAFDIVTASCAEQGTTAALMLSAGISPGTEPHLKAMLLAIRSSQLLGLLEKTRIFVPK 119
Query: 571 GQAMMGCLDEKGTLEYGQ--------------------------------GLMVVAKKPC 598
G+ +MGCLDE G LE GQ G +V+AK PC
Sbjct: 120 GRWLMGCLDELGILEQGQCFIRASSPSLNNCLVKYGSRLSAANTNAETILGTIVMAKNPC 179
Query: 599 LHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPL 658
LHPGD+R+L AVDVP LHH+VDC++FP KGERPH NE SGSD DG++YFV WD + IPP
Sbjct: 180 LHPGDVRILEAVDVPELHHLVDCLVFPKKGERPHANEASGSDLDGDLYFVTWDENLIPPG 239
Query: 659 Q--FQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSN 716
+ + P Y+PA K L R V+ D+ +F +VN+ LG I NAHVV+A AM
Sbjct: 240 KKSWNPMDYSPAEAKQLPRAVSQHDIVGFFLKNMVNEKLGPISNAHVVHADMSEYGAMDE 299
Query: 717 RCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNG 776
+C L +L++ DF KTG ++P+ LR K+YPDFM K+D Y S+ I+G LYR +
Sbjct: 300 KCIQLAELAATAVDFPKTGKIVSMPASLRPKLYPDFMGKEDAISYRSEKILGRLYRSIQE 359
Query: 777 IAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKT 836
+ + + YD DMEV G + ++ + Y+ +L L++ YG++T
Sbjct: 360 ASSDDLVPEETCTSNNLP-YDADMEVAGAADFLSS--AWQCKCSYETQLNALLNQYGVRT 416
Query: 837 EAEMLSRCIMEMAK-SFDKKRDL-EAISFSVRSLRKEARAWFNKKKND 882
EAE+++ I + K S ++ D+ E + + +L KE R+ F D
Sbjct: 417 EAELVTEHIWSLPKYSSRRQGDIKERLKNAYYALHKEFRSIFESIVTD 464
>gi|86196450|gb|EAQ71088.1| hypothetical protein MGCH7_ch7g495 [Magnaporthe oryzae 70-15]
Length = 1952
Score = 288 bits (737), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 203/668 (30%), Positives = 320/668 (47%), Gaps = 113/668 (16%)
Query: 270 KILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDE-DLGKLYSTVLSPQISSTN 328
K+ VTPS +Y P + +NRV+R Y + D FLR+ F DE G+L++ P +
Sbjct: 1003 KVTVTPSTMYLSSPMVETTNRVLRHYNEHKDRFLRVQFTDELPTGRLHA----PNDLGAD 1058
Query: 329 GERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMG 388
E I+ RV L+NGI IGD+ ++ LAF +SQ REN+ + F ++T IR MG
Sbjct: 1059 DE----IFSRVYRVLKNGIHIGDRHYKFLAFGSSQMRENSTYFFCDAGDVTCDSIRAWMG 1114
Query: 389 DFREIKNVTKYAARLGQSFASSREALHV------------------DSNIGKISAELAET 430
F I+NV KYAARLGQ F+++R V +GKIS+ A
Sbjct: 1115 RFSHIRNVGKYAARLGQCFSTTRSIDRVAMPWIKTIPDIEKNGYCFTDGVGKISSLWAVV 1174
Query: 431 VAKKCGYAIYTPSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLDILANSK 477
+++ Y PSAFQ R GG K + +R + K++++ + L+++ S
Sbjct: 1175 ISENLKLD-YIPSAFQFRMGGCKGVLVVWEDVKGQEIHIRPSQLKFETDHSRLEVIRCSH 1233
Query: 478 YQREGVARLRL---------DNVFERKQREVVARLDAILTDSSKVQEAL-ELMSSAENTN 527
+ + R + + VFE E +A+ + + D++ L + + + TN
Sbjct: 1234 FSVASLNRQTISVLTSLGVKNEVFESMLAEQLAKYNRAMEDATAAMTLLTQYVDENQMTN 1293
Query: 528 VLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYG 587
L L+ G+ EPF+ M + + ++ L+ +AR+ ++ G ++GC+DE TL +G
Sbjct: 1294 TLARLVKAGFMESHEPFVCTMLRLWRTWSVKTLKEKARLVVEKGAFVLGCVDETKTL-HG 1352
Query: 588 Q---------------------------------------GLMVVAKKPCLHPGDMRVLR 608
GL +V + P LHPGD+RV++
Sbjct: 1353 HFTHIPASPNQRPRLNGNMKLPEIFLQVPDGPSRDYKVITGLCLVGRNPSLHPGDIRVVQ 1412
Query: 609 AVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIP-PLQ--FQPTAY 665
A+DVP L H+ D V+F G+R CSG D DG+ +FV WD +P P Q ++P +Y
Sbjct: 1413 AIDVPQLRHIRDVVVFAQTGDRDIPGMCSGGDLDGDDFFVLWDERLLPLPSQRNYKPASY 1472
Query: 666 TPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLS 725
P P + L R+VT +D+ ++F Y+ N SL I +AH+ A ++ A +C +L L
Sbjct: 1473 HPPPARELDREVTADDLCQFFVTYMKNFSLPRIAHAHL--AQADKYGAKDEKCLELAYLH 1530
Query: 726 SIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGI-------A 778
S+ D+ KTGV A I RL +P FMEK + Y S+ I+G LY +V +
Sbjct: 1531 SLAVDYPKTGVPAAIRPRLMPNEFPHFMEKA-RGRYHSRKILGKLYDQVKPVNFHPAYEM 1589
Query: 779 PSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEA 838
P I S E + +G + + K +T YD + +M + I TE
Sbjct: 1590 PFDVKILSLYGE---------LSQHGDLGPKLLREARKLKTLYDQSIMRIMGQHEIATEF 1640
Query: 839 EMLSRCIM 846
E+ S ++
Sbjct: 1641 EVFSAFVL 1648
>gi|389646751|ref|XP_003721007.1| RNA-dependent RNA polymerase 1 [Magnaporthe oryzae 70-15]
gi|351638399|gb|EHA46264.1| RNA-dependent RNA polymerase 1 [Magnaporthe oryzae 70-15]
Length = 1407
Score = 288 bits (736), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 204/669 (30%), Positives = 321/669 (47%), Gaps = 115/669 (17%)
Query: 270 KILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDE-DLGKLYSTVLSPQISSTN 328
K+ VTPS +Y P + +NRV+R Y + D FLR+ F DE G+L++ P +
Sbjct: 458 KVTVTPSTMYLSSPMVETTNRVLRHYNEHKDRFLRVQFTDELPTGRLHA----PNDLGAD 513
Query: 329 GERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMG 388
E I+ RV L+NGI IGD+ ++ LAF +SQ REN+ + F ++T IR MG
Sbjct: 514 DE----IFSRVYRVLKNGIHIGDRHYKFLAFGSSQMRENSTYFFCDAGDVTCDSIRAWMG 569
Query: 389 DFREIKNVTKYAARLGQSFASSREALHV------------------DSNIGKISAELAET 430
F I+NV KYAARLGQ F+++R V +GKIS+ A
Sbjct: 570 RFSHIRNVGKYAARLGQCFSTTRSIDRVAMPWIKTIPDIEKNGYCFTDGVGKISSLWAVV 629
Query: 431 VAKKCGYAIYTPSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLDILANSK 477
+++ Y PSAFQ R GG K + +R + K++++ + L+++ S
Sbjct: 630 ISENLKLD-YIPSAFQFRMGGCKGVLVVWEDVKGQEIHIRPSQLKFETDHSRLEVIRCSH 688
Query: 478 YQREGVARLRL---------DNVFERKQREVVARLDAILTDSSKVQEAL-ELMSSAENTN 527
+ + R + + VFE E +A+ + + D++ L + + + TN
Sbjct: 689 FSVASLNRQTISVLTSLGVKNEVFESMLAEQLAKYNRAMEDATAAMTLLTQYVDENQMTN 748
Query: 528 VLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYG 587
L L+ G+ EPF+ M + + ++ L+ +AR+ ++ G ++GC+DE TL +G
Sbjct: 749 TLARLVKAGFMESHEPFVCTMLRLWRTWSVKTLKEKARLVVEKGAFVLGCVDETKTL-HG 807
Query: 588 Q---------------------------------------GLMVVAKKPCLHPGDMRVLR 608
GL +V + P LHPGD+RV++
Sbjct: 808 HFTHIPASPNQRPRLNGNMKLPEIFLQVPDGPSRDYKVITGLCLVGRNPSLHPGDIRVVQ 867
Query: 609 AVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPL----QFQPTA 664
A+DVP L H+ D V+F G+R CSG D DG+ +FV WD +R+ PL ++P +
Sbjct: 868 AIDVPQLRHIRDVVVFAQTGDRDIPGMCSGGDLDGDDFFVLWD-ERLLPLPSQRNYKPAS 926
Query: 665 YTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKL 724
Y P P + L R+VT +D+ ++F Y+ N SL I +AH+ A ++ A +C +L L
Sbjct: 927 YHPPPARELDREVTADDLCQFFVTYMKNFSLPRIAHAHL--AQADKYGAKDEKCLELAYL 984
Query: 725 SSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGI------- 777
S+ D+ KTGV A I RL +P FMEK + Y S+ I+G LY +V +
Sbjct: 985 HSLAVDYPKTGVPAAIRPRLMPNEFPHFMEKA-RGRYHSRKILGKLYDQVKPVNFHPAYE 1043
Query: 778 APSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTE 837
P I S E + D+ +E K +T YD + +M + I TE
Sbjct: 1044 MPFDVKILSLYGELSQH---GDLGPKLLREAR------KLKTLYDQSIMRIMGQHEIATE 1094
Query: 838 AEMLSRCIM 846
E+ S ++
Sbjct: 1095 FEVFSAFVL 1103
>gi|440466934|gb|ELQ36175.1| RNA-dependent RNA polymerase 1 [Magnaporthe oryzae Y34]
gi|440478755|gb|ELQ59556.1| RNA-dependent RNA polymerase 1 [Magnaporthe oryzae P131]
Length = 1977
Score = 288 bits (736), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 203/668 (30%), Positives = 320/668 (47%), Gaps = 113/668 (16%)
Query: 270 KILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDE-DLGKLYSTVLSPQISSTN 328
K+ VTPS +Y P + +NRV+R Y + D FLR+ F DE G+L++ P +
Sbjct: 1028 KVTVTPSTMYLSSPMVETTNRVLRHYNEHKDRFLRVQFTDELPTGRLHA----PNDLGAD 1083
Query: 329 GERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMG 388
E I+ RV L+NGI IGD+ ++ LAF +SQ REN+ + F ++T IR MG
Sbjct: 1084 DE----IFSRVYRVLKNGIHIGDRHYKFLAFGSSQMRENSTYFFCDAGDVTCDSIRAWMG 1139
Query: 389 DFREIKNVTKYAARLGQSFASSREALHV------------------DSNIGKISAELAET 430
F I+NV KYAARLGQ F+++R V +GKIS+ A
Sbjct: 1140 RFSHIRNVGKYAARLGQCFSTTRSIDRVAMPWIKTIPDIEKNGYCFTDGVGKISSLWAVV 1199
Query: 431 VAKKCGYAIYTPSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLDILANSK 477
+++ Y PSAFQ R GG K + +R + K++++ + L+++ S
Sbjct: 1200 ISENLKLD-YIPSAFQFRMGGCKGVLVVWEDVKGQEIHIRPSQLKFETDHSRLEVIRCSH 1258
Query: 478 YQREGVARLRL---------DNVFERKQREVVARLDAILTDSSKVQEAL-ELMSSAENTN 527
+ + R + + VFE E +A+ + + D++ L + + + TN
Sbjct: 1259 FSVASLNRQTISVLTSLGVKNEVFESMLAEQLAKYNRAMEDATAAMTLLTQYVDENQMTN 1318
Query: 528 VLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYG 587
L L+ G+ EPF+ M + + ++ L+ +AR+ ++ G ++GC+DE TL +G
Sbjct: 1319 TLARLVKAGFMESHEPFVCTMLRLWRTWSVKTLKEKARLVVEKGAFVLGCVDETKTL-HG 1377
Query: 588 Q---------------------------------------GLMVVAKKPCLHPGDMRVLR 608
GL +V + P LHPGD+RV++
Sbjct: 1378 HFTHIPASPNQRPRLNGNMKLPEIFLQVPDGPSRDYKVITGLCLVGRNPSLHPGDIRVVQ 1437
Query: 609 AVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIP-PLQ--FQPTAY 665
A+DVP L H+ D V+F G+R CSG D DG+ +FV WD +P P Q ++P +Y
Sbjct: 1438 AIDVPQLRHIRDVVVFAQTGDRDIPGMCSGGDLDGDDFFVLWDERLLPLPSQRNYKPASY 1497
Query: 666 TPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLS 725
P P + L R+VT +D+ ++F Y+ N SL I +AH+ A ++ A +C +L L
Sbjct: 1498 HPPPARELDREVTADDLCQFFVTYMKNFSLPRIAHAHL--AQADKYGAKDEKCLELAYLH 1555
Query: 726 SIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGI-------A 778
S+ D+ KTGV A I RL +P FMEK + Y S+ I+G LY +V +
Sbjct: 1556 SLAVDYPKTGVPAAIRPRLMPNEFPHFMEKA-RGRYHSRKILGKLYDQVKPVNFHPAYEM 1614
Query: 779 PSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEA 838
P I S E + +G + + K +T YD + +M + I TE
Sbjct: 1615 PFDVKILSLYGE---------LSQHGDLGPKLLREARKLKTLYDQSIMRIMGQHEIATEF 1665
Query: 839 EMLSRCIM 846
E+ S ++
Sbjct: 1666 EVFSAFVL 1673
>gi|406868525|gb|EKD21562.1| RNA-dependent RNA polymerase 1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1494
Score = 286 bits (733), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 224/769 (29%), Positives = 362/769 (47%), Gaps = 115/769 (14%)
Query: 195 KESLVQFTLLPGFVFSCNSDLNQDGKHA---LEMLFHLRECCYDPVSWLREQYR-KHVSS 250
+E L ++ + GFV + + D A LE + + YDP++ +Q +
Sbjct: 412 REILNEYNVTRGFVKKLSEIASVDAAKARNILEYVAGQEKRVYDPMTIFEDQEALAFTAK 471
Query: 251 GQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDN--FLRLSFV 308
+ P A Y K +TPS +YF P + +NRV+R Y E + FLR+ F
Sbjct: 472 TEIPHYCA--------YSRKATITPSTMYFSSPTVETTNRVLRHYARENRDGRFLRVQFT 523
Query: 309 DE-DLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQEREN 367
DE G++ + V + ++ ++ R+ TL NGI IGD+ +E LAF NSQ REN
Sbjct: 524 DELAEGRINACV--------DNQKNDELFTRIYRTLFNGIQIGDRHYEFLAFGNSQFREN 575
Query: 368 TLWMFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSR-----------EALHV 416
+ F L+ DIR MG F +IK V KYAARLGQ F+++R + V
Sbjct: 576 GAYFFCPTEHLSCDDIRGWMGHFSDIKVVAKYAARLGQCFSTTRAINGLSKPDIVKIADV 635
Query: 417 DSN-------IGKISAELAETVAKKCGYAIYT-PSAFQIRYGGYK-------------VT 455
++N +GKIS LA+ ++ + G T PSAFQ R GG K V
Sbjct: 636 ENNGYTFTDGVGKISPFLAQMISAELGLRTNTAPSAFQFRLGGCKGVLVVWPDAKEKEVH 695
Query: 456 LRNNMFKYKSESTSLDILANSKYQREGVARLRL---------DNVFERKQREVVARLD-A 505
+R + K+ + L+I+ +++ + R + D VF + E +A A
Sbjct: 696 IRMSQQKFTAVYNGLEIIRCARFSCATLNRQTITILSALGVPDEVFLKMLSEQLANYQTA 755
Query: 506 ILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRAR 565
+ D + V L + + T + ++ G+ + +PF+ + + + ++ L+ +A+
Sbjct: 756 MDNDDAAVSLLLRYIDDNQMTINIATMIRNGFMAEKDPFVLSLLHLWRSWSIKLLKEKAK 815
Query: 566 IFIQNGQAMMGCLDEKGTLE--------YGQ---------------------------GL 590
I I+NG ++GC+DE TL +G+ G+
Sbjct: 816 IIIENGAFVLGCVDETFTLRGYTISTAPHGEQVAEEELPQIFLQVPDKSDPNRYNIITGI 875
Query: 591 MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
+V + P LHPGD+RV++AVDVPALHH+ D V+FPA G+R + CSG D DG+ +FV W
Sbjct: 876 CLVGRNPSLHPGDLRVVQAVDVPALHHLRDVVVFPASGDRDVPSMCSGGDLDGDDFFVIW 935
Query: 651 DHDRIPPLQF--QPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYS 708
D + + P ++ QP Y K+ + V I D+ ++F ++ NDSL I +AH+ + +
Sbjct: 936 D-EALRPREWNCQPMNYIAPKPKLHNQPVQIVDLMKFFVRFMKNDSLPAIAHAHLAQSDA 994
Query: 709 EPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDK---TWYESQH 765
+C +L L S D+ KTG AA +P LR + +P FMEK+ K Y S
Sbjct: 995 LQMSVKDPKCIELASLHSKAVDYVKTGEAAQMPKHLRPRKWPHFMEKKHKPKTAQYHSNE 1054
Query: 766 IVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKL 825
I+G LY +V + F K + D + +++ +++YD +
Sbjct: 1055 ILGQLYDKVETVDFKPQYEGPFDKRILKAYILDDAILKTVRQI---------KSKYDTAM 1105
Query: 826 GNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRDLEAISFSVRSLRKEARA 874
LM IKTE E+ S ++ + + E I+ +L+ + RA
Sbjct: 1106 KRLMAQQEIKTEFEIWSTFVLSRPRVGSDYKVQEEIARLSDALKDQFRA 1154
>gi|367042188|ref|XP_003651474.1| hypothetical protein THITE_2048877 [Thielavia terrestris NRRL 8126]
gi|346998736|gb|AEO65138.1| hypothetical protein THITE_2048877 [Thielavia terrestris NRRL 8126]
Length = 1511
Score = 285 bits (730), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 205/692 (29%), Positives = 324/692 (46%), Gaps = 108/692 (15%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
V K++VTP+++YF P + +NR+VR Y D+F+R+ F DE +L +I +
Sbjct: 505 VRKVIVTPTRIYFNTPTVETTNRIVRRYKQVQDHFIRVQFTDE--------LLEGRIRAC 556
Query: 328 NGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASR---PELTAADIR 384
+R +Y RV + GI +G ++ LAF NSQ REN + F P++T IR
Sbjct: 557 EVDRDDELYTRVYRVMMQGIRMGRWHWKFLAFGNSQIRENGAFFFCQAEGYPDITCDTIR 616
Query: 385 ERMGDFREIKNVTKYAARLGQSFASSREALHVDS------------------NIGKISAE 426
+ MG+F I V K AARLGQ F+++R + S +GKIS
Sbjct: 617 QWMGNFSHISTVAKLAARLGQCFSTTRLLRCISSPWIVKIPDVEKGGFCFTDGVGKISMV 676
Query: 427 LAETVAKKCGYAIY-TPSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLDI 472
LA V++ + IY PSAFQ R GG K V +R + K+ +E L+I
Sbjct: 677 LASLVSQD--WKIYPPPSAFQFRMGGCKGVLVTWPDAKGMEVHIRPSQEKFSAEYNGLEI 734
Query: 473 LANSKYQREGVARLRL---------DNVFERKQREVVARLDAILTDSSKVQEALELMSS- 522
+ S++ + R + D+VF E ++ DA +TD K A+EL+SS
Sbjct: 735 IRCSQFSCATLNRQTILILSCLGVPDDVFTSMMDEQISNYDAAMTDKDK---AVELLSSY 791
Query: 523 ----AENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCL 578
+T + + +LN G+ EPF+ + Q + + ++ L+ +AR+ + G ++GC+
Sbjct: 792 VDENMTSTTIARMVLN-GFMHTQEPFVRTLLQLWRSWSIKGLKEKARLIVDQGAFVLGCV 850
Query: 579 DEKGTL----------------------------------EYGQGLMVVAKKPCLHPGDM 604
DE G+L + GL +V + P LHPGD+
Sbjct: 851 DETGSLRGHSKATEGRKKIAQHHLPQIFLQVPDPRDRGAYKVITGLCLVGRNPSLHPGDI 910
Query: 605 RVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTA 664
RV+ AVD+P L H+ D V+FP G+R + CSG D DG+ +FV WD IPP P
Sbjct: 911 RVVEAVDLPQLRHLRDVVVFPLSGDRDIPSMCSGGDLDGDDFFVIWDPKLIPPEWSHPPM 970
Query: 665 YTPAPEKIL-ARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVK 723
AP+ + R T + + +F ++ ND L +I +AH+ A E + A +C L +
Sbjct: 971 NYSAPKSLTEPRASTAKSLATFFVLFMKNDRLPLIAHAHLATADYEVEGAKHRKCLQLAE 1030
Query: 724 LSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTT 783
L S D+ KTGV A +L + YP FMEK Y S ++G LY V+ +
Sbjct: 1031 LHSTAVDYVKTGVPAEWNKKLDPRKYPHFMEKPKSKSYHSTSVLGKLYDMVDRVV----- 1085
Query: 784 IKSFAKEGAMQFYDTDMEVNGFKEVAMQF--DGFKYRTEYDNKLGNLMDYYGIKTEAEML 841
F + D ++ F + + K +T+YD + +M I+TE E+
Sbjct: 1086 ---FDNSDNYKLPFDDRILSRFHPLGSNILKEARKIKTQYDIAMRRIMGQLEIRTEFEVW 1142
Query: 842 SRCIMEMAKSFDKKRDLEAISFSVRSLRKEAR 873
+ ++ + + E + L+K+ R
Sbjct: 1143 TAFVLSKPRVGTDYKVQEKVGREAAGLKKQFR 1174
>gi|345566166|gb|EGX49112.1| hypothetical protein AOL_s00079g66 [Arthrobotrys oligospora ATCC
24927]
Length = 1475
Score = 285 bits (729), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 216/709 (30%), Positives = 326/709 (45%), Gaps = 126/709 (17%)
Query: 234 YDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVR 293
YDP+ L + + S+ Q P + K +TP+ +Y+ P + S RV+R
Sbjct: 582 YDPMEILDIKPERR-STAQIPKY--------CVETRKATITPTMIYYANPVVETSYRVIR 632
Query: 294 SYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKK 353
+ + D FLR+ F DE KL+ +IS+T + ++ RV L NGI IGD+
Sbjct: 633 HFFNHKDRFLRVQFTDE---KLHG-----KISATELDTSHELFTRVSKALNNGIKIGDRH 684
Query: 354 FETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSR-- 411
F+ LAF NSQ R++ + FA P+LT DIR+ MG F +IK V K++AR GQ F+++R
Sbjct: 685 FQFLAFGNSQLRQHGAYFFADGPDLTCDDIRKWMGKFEKIKVVAKFSARYGQCFSTTRAM 744
Query: 412 ---------------EALHVDSNIGKISAELAETVAKKCGYAIY----TPSAFQIRYGG- 451
G IS+ A+ +A + Y I P AFQ R GG
Sbjct: 745 NGFKVKDITIPDVERNGFCFTDGCGTISSSAAQLIAAE--YRIPRESPLPCAFQFRLGGC 802
Query: 452 -------------------YKVTLRNNMFKYKSESTSLDILANSKYQREGVARLRL---- 488
++V +R + K+ ++ SL+I+ S + + R +
Sbjct: 803 KGVLVVDPNIKKVETGEAGFQVCIRPSQRKFDADHNSLEIIRYSDFSVATLNRQLIQVLS 862
Query: 489 -----DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNV-LKELLNCGYKPDAE 542
D VF K + L+ + D ++ L A + + LL+ G+ E
Sbjct: 863 DLGLEDTVFLDKLHSQLRDLNLAMEDKEAARKILMKNVDANGGTIQIAGLLSDGFMTSQE 922
Query: 543 PFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYG--------------- 587
PF+ + + A ++ L+ +ARI I+NG ++G +DE G L+
Sbjct: 923 PFVQCLLHLWRAWSIKMLKEKARITIENGCFLLGVVDETGILKGHFDKEHEELKKSRANG 982
Query: 588 ---------------------------QGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVD 620
QG ++A+ P LHPGD+RV+ AVD P L H+ +
Sbjct: 983 EALRCDLLPEIFVQIPDYENKGHYKIIQGPCLLARNPSLHPGDLRVVNAVDCPDLRHLRN 1042
Query: 621 CVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPP-LQFQPTAYTPAPEKILAR--DV 677
V+FP G++P N CSG D DG+ Y V WD IPP + P YTP P+ + A+ +V
Sbjct: 1043 VVVFPQTGDKPIANMCSGGDLDGDDYIVIWDGTFIPPKVNESPMDYTP-PKPVEAKSGNV 1101
Query: 678 TIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVA 737
T+ED+ ++F Y+ ND+LG I NAH+ A P S C +L L S+ DF KTGV
Sbjct: 1102 TLEDIRKFFVRYMKNDTLGTIANAHLATADRLPAGVFSQECVELAGLHSLAVDFPKTGVD 1161
Query: 738 ATIPSRLRVKIYPDFMEKQ---DKTWYESQHIVGNLYREVNGIA-PSTTTIKSFAKEGAM 793
A + LR++ +P F EK K +Y S I+G LY V +A K +G +
Sbjct: 1162 AKMRKELRIRDWPHFFEKHIGTKKRFYVSSEILGQLYDAVEKVAFRPEECAKDLKFDGRI 1221
Query: 794 QFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLS 842
D+ K + M D + +YD + LM IKTE E+ S
Sbjct: 1222 LTAFNDINE---KHLNMARD---LKAKYDAAIRRLMAQNDIKTEFEIWS 1264
>gi|361125379|gb|EHK97425.1| putative RNA-dependent RNA polymerase 1 [Glarea lozoyensis 74030]
Length = 1213
Score = 284 bits (726), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 203/666 (30%), Positives = 319/666 (47%), Gaps = 107/666 (16%)
Query: 267 YVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDN--FLRLSFVDEDL-GKLYSTVLSPQ 323
Y K +TPS + F P + +NRV+R Y E + FLR+ F DE GK+ S V
Sbjct: 246 YSRKATITPSTILFSSPTVETTNRVLRHYSRENHDGRFLRVQFTDESFEGKINSCV---- 301
Query: 324 ISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADI 383
+R I+ RV TL NGI IGD+ ++ LAF NSQ REN + F LT DI
Sbjct: 302 -----KQRNDEIFTRVYRTLANGIRIGDRHYKFLAFGNSQFRENGAYFFCEDEHLTCNDI 356
Query: 384 RERMGDFREIKNVTKYAARLGQSFASSREALHVDS------------------NIGKISA 425
R+ MG+F I KYAARLGQ F+++R + + +GKIS
Sbjct: 357 RDWMGNFTHINVPAKYAARLGQCFSTTRAINGLSAPTIVTIPDIEHGKYTYSDGVGKISP 416
Query: 426 ELAETVAKKCG-YAIYTPSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLD 471
LA+ + + G + + PSAFQ R GG K V +R + K+ + L+
Sbjct: 417 FLAQMITAELGLHVAHEPSAFQFRLGGCKGILVTWPDAKDREVHIRKSQQKFTAVYNGLE 476
Query: 472 ILANSKYQREGVARLRL---------DNVFERKQREVVARL-DAILTDSSKVQEALELMS 521
I+ S+Y + R + D VF + +E ++ +A+ D+ ++ +
Sbjct: 477 IIRCSQYSCATLNRQTITLLSNLGVGDGVFLKMMKEQLSGYQNAMENDNLAIELLCRFID 536
Query: 522 SAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEK 581
T + ++++ K +PF+S + + + ++ L+ +A+I ++ G + GC+DE
Sbjct: 537 DNRMTINIAKMISSDIK---DPFVSSLLHLWRSWSIKLLKEKAKIVVEKGAFVFGCVDET 593
Query: 582 GTLE--------------------------YG-----------QGLMVVAKKPCLHPGDM 604
TL +G +G+ +V + P LHPGD+
Sbjct: 594 HTLRGYKAPSTEGDAIPEEQLPQIFIQVPVHGCDPKNPVYNVIEGICLVGRNPSLHPGDL 653
Query: 605 RVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIP-PLQFQPT 663
R+ +A+DVPALHH+ D V+FP+ G+R + CSG D DG+ YFV WD D P P
Sbjct: 654 RICQAIDVPALHHLRDVVVFPSCGDRDVPSMCSGGDLDGDDYFVIWDKDLQPHEWNCSPM 713
Query: 664 AYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVK 723
Y P K V ++D+ ++F Y+ NDSL I +AH+ A P A + +C L
Sbjct: 714 DYDAPPAKSQRNPVAVKDLMQHFVRYMKNDSLPQIAHAHLAQADQLPGGAKNPKCIQLAH 773
Query: 724 LSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDK---TWYESQHIVGNLYREVNGIAPS 780
L S D+ K+G AA +P L+ + +P FMEK+ K YES I+G LY +V I
Sbjct: 774 LHSKAVDYVKSGHAAEMPKDLQPRRWPHFMEKRHKRKDQLYESTTILGQLYNQVERI--- 830
Query: 781 TTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEM 840
+F + + F + F++ A++ + +++YD + +M IKTE E+
Sbjct: 831 -----NFLPQWKVPFDRRILTAYKFEDAALK-KARQLKSKYDVHMRRIMAQQEIKTEFEV 884
Query: 841 LSRCIM 846
S ++
Sbjct: 885 WSTFVL 890
>gi|440633273|gb|ELR03192.1| hypothetical protein GMDG_01175 [Geomyces destructans 20631-21]
Length = 1568
Score = 284 bits (726), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 223/761 (29%), Positives = 353/761 (46%), Gaps = 120/761 (15%)
Query: 203 LLPGFVFSCNSDLNQDGKHALEMLFHLREC---CYDPVSWLRE-QYRKHVSSGQFPTSPA 258
+ P FV S ++ D + A +L ++ E YD +S ++ H + PT A
Sbjct: 441 ITPEFVKELASLVDTDKERATCILEYISEQGKRIYDVMSIFKDPDALAHSPKSKIPTYCA 500
Query: 259 VALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYST 318
Y K VTP+ +YF P + SNRV+R + D FLR+ F DE L+
Sbjct: 501 --------YTRKATVTPTTIYFSSPTVETSNRVIRKFSAHGDRFLRVQFTDE----LFEG 548
Query: 319 VLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPEL 378
++ + + R +++ RV TL+NGI IGD+ FE LAF NSQ REN + F L
Sbjct: 549 RIN---ACADKIRNDQLFTRVYRTLKNGIRIGDRHFEFLAFGNSQFRENGAYFFCPTDGL 605
Query: 379 TAADIRERMGDFREIKNVTKYAARLGQSFASSR----------EALHVDSN-------IG 421
+ IR+ MG F I V KYAARLG F+++R E V+ N +G
Sbjct: 606 SCVQIRDWMGKFHHINVVAKYAARLGLCFSTTRAIRNTGMTVLELQEVERNGYNFTDGVG 665
Query: 422 KISAELAETVAKKCGYAIYTPSAFQIRYGGYK-------------VTLRNNMFKYKSEST 468
KIS L + +A + + ++ PS Q R GG K + +R + K+ +E
Sbjct: 666 KISPFLMKMIATEL-HLLHEPSVVQFRMGGCKGILAISPDAKGQEIHIRKSQTKFTAEYM 724
Query: 469 SLDILANSKYQREGVARLRL---------DNVFERKQREVVARLDAILTDSSKVQEALEL 519
L+I+ S + + R + D+VF R E ++ + D K ALEL
Sbjct: 725 GLEIIRTSSHSVATLNRQTITILSALGVEDHVFNRMLDEQLSNYMDAMNDPDK---ALEL 781
Query: 520 MSSAENTN----VLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMM 575
+ + N ++ ++ G+ EPF+ + + + ++ L+ +A+I ++ G ++
Sbjct: 782 LGRYVDDNHMTMMIASMVLDGFMRTKEPFVLSLLHLWRSWSIKLLKEKAKIIVEKGAFVL 841
Query: 576 GCLDEKGTLE------------------------YGQ--------------GLMVVAKKP 597
GC DE TL Y Q GL +V + P
Sbjct: 842 GCTDETQTLRGHSKTTNAGKGTITAEDIDKLPQIYLQVTDRKDPRHNVIIEGLCLVGRNP 901
Query: 598 CLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIP- 656
LHPGD+RV++AVDVPALHH+ D V+F G+R CSG D DG+ +FV WD D +P
Sbjct: 902 SLHPGDIRVVQAVDVPALHHLRDVVVFSQLGDRDVPGMCSGGDLDGDDFFVIWDQDLLPR 961
Query: 657 PLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSN 716
+P YT P L R V I DV +F Y+ +D+L I +AH+ +
Sbjct: 962 EWNAEPMDYTAPPPVKLDRPVEINDVMSFFVKYMKSDTLPTIAHAHLALSDQLDFSVRDP 1021
Query: 717 RCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDK---TWYESQHIVGNLYRE 773
+C +L L S DF K+G+ A +P LR + +P FMEK+ K Y S+ I+G LY +
Sbjct: 1022 KCLELAALHSKAVDFVKSGIPAEMPKYLRPRKWPHFMEKKHKPKEQIYVSKKILGQLYDK 1081
Query: 774 VNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYG 833
V + F K ++ Y D ++A Q +++YD + +M +
Sbjct: 1082 VESVDFIPHYESPFDKR-ILRAYPED---RAILKLARQI-----KSQYDTAMRRIMAQHD 1132
Query: 834 IKTEAEMLSRCIM---EMAKSFDKKRDLEAISFSVRSLRKE 871
I+TE E+ + ++ + + + ++ IS ++++ KE
Sbjct: 1133 IETEFEVWTSFVLSKPRVGSDYKVQEEMGIISSTLKARFKE 1173
>gi|451997457|gb|EMD89922.1| hypothetical protein COCHEDRAFT_1138647 [Cochliobolus heterostrophus
C5]
Length = 1228
Score = 284 bits (726), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 204/662 (30%), Positives = 324/662 (48%), Gaps = 105/662 (15%)
Query: 271 ILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDE-DLGKLYSTVLSPQISSTNG 329
+ +TP+ ++ P + SNR++R Y + D F+R+ F DE + G+L + NG
Sbjct: 395 VTITPTMMHVATPVMETSNRIIRKYEADADRFIRVRFTDEKNEGQLRN--------QPNG 446
Query: 330 ERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGD 389
R +++RV ++NGIV+ + +E LAF NSQ REN + +A +A DIR +G+
Sbjct: 447 -RAEAVFDRVFRAMKNGIVVAGRYYEFLAFGNSQFRENGAYFYAPTSSKSANDIRISLGE 505
Query: 390 FREIKNVTKYAARLGQSFASSREALHVD-----------------SNIGKISAELAETVA 432
F IK V+K+AARLGQ F+++R A+ V +GK+S LA+ A
Sbjct: 506 FDHIKTVSKFAARLGQCFSTTR-AMGVTVELTTTPDKKHNNFIFTDGVGKLSPFLAQMAA 564
Query: 433 KKCGYA-IYT--PSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLDILANS 476
++ G A +T PS FQ R GG K V +R + +K+++ T L+I+ +S
Sbjct: 565 QELGLANAFTDPPSLFQFRLGGSKGVLALDPKLKRNQVKIRPSQYKFRAPYTGLEIIRSS 624
Query: 477 KY-----QREGVARLRL----DNVFERKQREVVARLDAILTD-SSKVQEALELMSSAENT 526
+ R+ + L D VF RKQ +++ + D ++ +Q+ + + + T
Sbjct: 625 SFATPYFNRQIILVLSYLGVQDAVFLRKQEDMMNDYSRAMADETTALQKLRKNIDINQTT 684
Query: 527 NVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDE------ 580
+ ++ G+ EPF+ + + A + L+ +ARI I NG ++GC+DE
Sbjct: 685 LTMAAMVLDGFMGSREPFIMSLLALWRACTIKNLKEKARIAIDNGAFLLGCVDETKKLKG 744
Query: 581 --------------------------------KGTLEYGQGLMVVAKKPCLHPGDMRVLR 608
KG +G+ +VA+ P LHPGD+RV+R
Sbjct: 745 HFNDPQSRRDATRDEKLATLPEIFLQVSDPNSKGHYIIIEGICIVARNPSLHPGDVRVVR 804
Query: 609 AVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPP-LQFQPTAYTP 667
AV+V LHH+ + V+FP G+R N CSG D DG+ Y V WD D +P + P +TP
Sbjct: 805 AVNVEELHHLKNVVVFPQTGDRDLANMCSGGDLDGDDYMVLWDTDLLPERINEPPMDFTP 864
Query: 668 APEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSI 727
+ ++ D+ +F +YI ND+LG I +AH+ A + C +L +L S
Sbjct: 865 EKAVEIDGPISALDMARFFVNYIKNDALGPIAHAHLAQADFNENGVGDPICLELAELHSR 924
Query: 728 VGDFSKTGVAATIPSRLRVKIYPDFMEKQ---DKTWYESQHIVGNLYREVNGIAPSTTTI 784
DF K+G+ A + LR K +P FMEK+ Y+S+ I+G LY EV I
Sbjct: 925 AVDFPKSGIPAEMKRELRPKKWPHFMEKKYLSQHQIYKSKKILGLLYDEVKLIDFEPQWE 984
Query: 785 KSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRC 844
F K ++ +D D E+ K +++ YD L LM +GIKTE E S
Sbjct: 985 NPFDKR-ILEAFDLDQELLD-KAASLKL-------SYDEALRRLMAKHGIKTEFEAWSVF 1035
Query: 845 IM 846
++
Sbjct: 1036 VL 1037
>gi|391331492|ref|XP_003740179.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Metaseiulus
occidentalis]
Length = 1286
Score = 283 bits (724), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 220/705 (31%), Positives = 341/705 (48%), Gaps = 109/705 (15%)
Query: 264 GLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQ 323
G +YV ++ VTP+++ ++ NR++R + E +R+ F D++L KL +VL+ +
Sbjct: 326 GTVYVRRVFVTPTRMILRFADLHTQNRILRHFDSEYA--IRVCFRDDNLDKLTFSVLNMR 383
Query: 324 ISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE-LTAAD 382
E+ + V +R+GI IGD+K+ +A S+SQ R++ +W +A P AA
Sbjct: 384 ------EKLPFLNHVVGDHIRSGITIGDRKYMYVAASSSQLRDHGVWFYALDPSGFDAAS 437
Query: 383 IRERMGDFREIKNVTKYAARLGQSFASSREALHV-------------------------- 416
IR+ MGDF I NV AR+GQ F+S++E + V
Sbjct: 438 IRQWMGDFSNISNVATRMARMGQCFSSTQETVEVTPLEEVHEDDIWYPEQVHPTSKKPYC 497
Query: 417 -DSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK-------------VTLRNNMFK 462
GKIS L V + I PSA QIRY G K + LR +M K
Sbjct: 498 FSDGCGKISPSLLSEVWGSLPHTISQPSALQIRYRGCKGMVCLDPSLEGRQLVLRKSMVK 557
Query: 463 YKSEST-SLDIL-----ANSKYQREGVARLRLD----NVFERKQREVVARL-DAILTDSS 511
++ S L+++ N R +A L +VF R + E++ ++ D+++ ++S
Sbjct: 558 FECNSNRKLEVIKWSAPMNMFLNRPFIAILEHHGVKIDVFLRLELEMILQIADSLVCEAS 617
Query: 512 KVQEALELMSSAENTNV-LKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFI-- 568
AL +++S T + L G++ +PF + M ++L+ L+ +A I I
Sbjct: 618 ----ALRVLTSFVKTPIPFYGLAETGWQLVQDPFFTQMLFDLLKTSLMSLKEKANIAIPV 673
Query: 569 QNGQAMMGCLDEKGTLEYGQGLM------------------------VVAKKPCLHPGDM 604
G+ M+G +DE G LEYGQ + VV K PCLHPGD+
Sbjct: 674 NEGRNMLGVVDETGLLEYGQVFIQFTEMPSAPFQISQARTRVVDADVVVTKCPCLHPGDV 733
Query: 605 RVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTA 664
R LRAVD+P LHH+ DC++FPAKG+ PH E SGSD DG+ Y W D I +P
Sbjct: 734 RRLRAVDIPELHHVRDCIVFPAKGKAPHPFEMSGSDLDGDEYICIWKEDLIFEENVEPYL 793
Query: 665 YTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKL 724
Y P ++ + YI ND +GII NAH+ A+++ +S+ C LV
Sbjct: 794 YDDKPLGVVKPYQRPVHEVSFLCSYIANDMIGIISNAHL--AWADQRGLISDECLALVDK 851
Query: 725 SSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQD-KTWYESQHIVGNLYREVNGIAPSTTT 783
+S DF+KTG + + + + +PDFMEK D K Y+S +G LYR V I T
Sbjct: 852 ASKALDFAKTGHSVDLHPNEKPERFPDFMEKGDHKHSYQSNKALGILYRTVRQIMSVNDT 911
Query: 784 IKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSR 843
S +F + +EV G++ + D + Y+ +L N+MD +GI +E E+ S
Sbjct: 912 QLS----SGHKF--SPLEVPGWQ--MFRDDAYAAMRRYNQRLANIMDQHGIMSEGEVFSG 963
Query: 844 CIMEMAKSFDKKRDLEA-----ISFSVRSLRKEAR-AWFNKKKND 882
I + +FD R +A + +L +E R +F + KND
Sbjct: 964 RIGTL-NTFDASRAEKASVALLVDRQKTALMEETREQFFAELKND 1007
>gi|342879234|gb|EGU80489.1| hypothetical protein FOXB_08949 [Fusarium oxysporum Fo5176]
Length = 1391
Score = 282 bits (721), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 204/684 (29%), Positives = 331/684 (48%), Gaps = 131/684 (19%)
Query: 261 LDGGLI---------YVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDE- 310
+DG +I + K ++TP+ + + P + +SNRV+R Y D FL++ F +E
Sbjct: 460 IDGSIIMSRIPSHCCLIRKAVITPTTIRYTTPTVEMSNRVMRRYKHYEDRFLKIQFTEEM 519
Query: 311 DLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLW 370
+ G++ + N ++ IY+RVL ++ G+ IGD+ +E LAF NSQ R N +
Sbjct: 520 EKGRI----------AVNKDQNDEIYKRVLRSMYKGVRIGDRFYEFLAFGNSQLRVNGAY 569
Query: 371 MFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDS------------ 418
F L+ DIR MG F IK V KYAARLGQ F+++RE LH S
Sbjct: 570 FFCPTEHLSCDDIRRWMGQFSHIKVVAKYAARLGQCFSTTRE-LHAISAPATQQIPDIER 628
Query: 419 -------NIGKISAELAETVAKKCGYAIYT-PSAFQIRYGGYK--------------VTL 456
IGKIS+ LA+ +++ + PSAFQ R GG K V +
Sbjct: 629 NGYCFTDGIGKISSFLAQLISEDMILDVVARPSAFQFRMGGCKGVLAIWPNDTKVMEVHI 688
Query: 457 RNNMFKYKSESTSLDI-----LANSKYQRE--------GVARLRLDNVFERKQREVVARL 503
R + K++S+S L+I +A + R+ GV N+ + + R
Sbjct: 689 RESQKKFESDSKGLEIIRSAAMATATLNRQTITILECLGVPIASFTNLLDHQLRSY---- 744
Query: 504 DAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPD--AEPFLSMMPQTFHASNLLELR 561
+ + + V A+++++ + N + +LL G+K D EPF+ + + + + +L L+
Sbjct: 745 -ELAMEDNDV--AIDMLTKFVDENNISDLLRAGFKTDDLQEPFVVNVLKLWRSWSLKLLK 801
Query: 562 TRARIFIQNGQAMMGCLDEKGTL----------------------------------EYG 587
+ARI +Q ++GC+DE GTL +
Sbjct: 802 EKARIQVQKSAFVLGCVDETGTLRGHSSETEGSEDKATDRLPQIFIQLSDATHYNKTQVI 861
Query: 588 QGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYF 647
G+ ++ + P LHPGD+RV+ AVD PALHH+ D V+FP+ G++P N SG D DG+ +F
Sbjct: 862 SGVCIIGRNPSLHPGDIRVVEAVDCPALHHLRDVVVFPSTGDQPVPNMLSGGDLDGDDFF 921
Query: 648 VCWDHDRIPPLQFQPTAYTPAPEKI-LARDVTIEDVEEYFADYIVNDSLGIICNAHVVYA 706
V W+ IP P AP+ I L RDVT++D+ +F Y+ ND L +I +H+ A
Sbjct: 922 VIWEPTLIPRRWNYPPMNYLAPKPIELDRDVTVDDLRNFFVKYLKNDKLPLIATSHL--A 979
Query: 707 YSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHI 766
+S+ MS +C +L +L S D+ KTG A + + + +P FMEK++ Y S+
Sbjct: 980 FSDDLGPMSPKCLELAELHSKAVDYPKTGDPAVLRRDQQPRKWPHFMEKKNS--YTSRKA 1037
Query: 767 VGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGF----KYRTEYD 822
+G ++ +V G I +D+ + K+ + D K +T+YD
Sbjct: 1038 LGVIFDKVKGKQVKFDPI-----------WDSPFDQRIIKKFELNRDTLKSARKIKTQYD 1086
Query: 823 NKLGNLMDYYGIKTEAEMLSRCIM 846
+ L+ + +KTE E+ + M
Sbjct: 1087 TSVRRLLSQHALKTEFELWTGFAM 1110
>gi|425783248|gb|EKV21105.1| RNA-directed RNA polymerase (Sad-1), putative [Penicillium digitatum
Pd1]
Length = 1347
Score = 281 bits (720), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 213/761 (27%), Positives = 351/761 (46%), Gaps = 117/761 (15%)
Query: 198 LVQFTLLPGFVFSCNSDLNQDGKHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSP 257
L +F++ FV + LE + ++ DP+ ++ K V+ + P+
Sbjct: 399 LSEFSMSREFVEKVKDLGDDQATRLLEFVATEKKQYLDPMEIFDLKFFKRVTDSKIPSY- 457
Query: 258 AVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDE--IDNFLRLSFVDEDLGKL 315
+++ VTP+ +Y+ P + +SNRVVR + + FLR+ F DE
Sbjct: 458 -------CCFMHTARVTPTTIYYNTPTVDISNRVVREWSTKSAPGRFLRVRFTDERT--- 507
Query: 316 YSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASR 375
+I+++ G+ IY RV TL NGI IGD+ +E LAF NSQ RE+ + FA
Sbjct: 508 -----EGRINASLGDSNDEIYTRVKRTLANGISIGDRHYEFLAFGNSQFREHGAYFFAPD 562
Query: 376 PELTAADIRERMGDFREIKNVTKYAARLGQSFASS-----------------REALHVDS 418
++AA IR MG F I+NV KYAARLGQ F+++ R
Sbjct: 563 AGVSAATIRAWMGQFNHIRNVAKYAARLGQCFSTTRAFTGSSVQVATCNDVVRNGFTFSD 622
Query: 419 NIGKISAELAETVAKKCGYAIYT---PSAFQIRYGGYK-------------VTLRNNMFK 462
+GK+S LA+ V + T PSAFQ R GG K V +R + K
Sbjct: 623 GVGKVSKFLAQMVTSQHNIKTLTGESPSAFQFRLGGAKGMLVVSPDPMPQEVHIRPSQQK 682
Query: 463 YKSESTSLDILANSKYQREGVARLRL---------DNVFERKQREVVARLDAILTDSSKV 513
+++ L+I+ S+Y + R + D VF K ++ ++ + SK
Sbjct: 683 FETTQAGLEIIRWSQYSLATLNRQLILVLSALGIPDKVFHSKLNSMLGSFHRVMCNDSKA 742
Query: 514 QEALE-LMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQ 572
L+ + + T +L ++++ G++ + EPF + M + + + +L L+ +A+I I G
Sbjct: 743 INLLQKYIDPNQTTLILAQMVSDGFRQNEEPFANTMLELWKSWHLKHLKEKAKIAIDQGA 802
Query: 573 AMMGCLDEKGTLE-------------YGQ-------------------------GLMVVA 594
++G +DE G L+ Y Q GL ++A
Sbjct: 803 NLLGVMDETGVLKGYFKNTLPRRGASYAQKLAALPEIFVQICRLEGNGEYEVIEGLCILA 862
Query: 595 KKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDR 654
+ P LHPGD+RV+RAV+ P L + D V+ P G++ + CSG D DG+ Y + WD D
Sbjct: 863 RNPSLHPGDIRVVRAVNRPELKGLRDVVVLPQTGDQDIASMCSGGDLDGDDYLIIWDPDL 922
Query: 655 IPPLQF-QPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKA 713
IP F + Y + L DVT++++ +F Y+ ND L I +AH+ +A P
Sbjct: 923 IPTRWFVECMDYKGSKAPDLDHDVTVDEITSFFVTYMKNDCLPRIAHAHLAWADRLPRGV 982
Query: 714 MSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDK---TWYESQHIVGNL 770
+C L +L S D++K+G A + L K +P FMEK+ K + Y+S I+G L
Sbjct: 983 WEEKCIRLAQLHSDAVDYNKSGAHARMARSLDPKFWPHFMEKRFKRPSSIYKSTKILGQL 1042
Query: 771 YREVNGIAPSTTTIKSFAKEGAMQFYDTDME--VNGFKEVAMQFDGFKYRTEYDNKLGNL 828
Y V + P +F + F +E + E +++ + + E+D + +
Sbjct: 1043 YDAV--VTP------NFVPKLGKPFDSRILESPLASASETYIEY-ARELKAEFDMNMRQI 1093
Query: 829 MDYYGIKTEAEMLSRCIME---MAKSFDKKRDLEAISFSVR 866
M Y I TE E+ S ++ + + + + DL I ++R
Sbjct: 1094 MAQYEINTEFEVWSTFVLRHGFVIRDYKMQEDLGRIVGTLR 1134
>gi|322701339|gb|EFY93089.1| suppressor of ascus dominance [Metarhizium acridum CQMa 102]
Length = 1296
Score = 280 bits (717), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 228/796 (28%), Positives = 378/796 (47%), Gaps = 125/796 (15%)
Query: 165 SVSIGQSSAICLELPSRALIPKALK---DFFHYKESLVQFTLLPGFVFSCNSDLNQDGKH 221
+V Q SA+ L +P + +P ++ + + L ++T+ F+ N+ D H
Sbjct: 318 AVPASQPSAL-LSMPQKIHLPFEVRYQLEVCISRGVLNEYTIGIDFLQELNNLRTMDATH 376
Query: 222 ALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFC 281
LE L E +DP+ + + F PA + YV K +TP+ + F
Sbjct: 377 RLEYLVDQNEILFDPMKLFSME-----DATAF--VPAARIPHYCTYVRKASITPTTIRFN 429
Query: 282 GPEISLSNRVVRSYPDEIDNFLRLSFVDE-DLGKLYSTVLSPQISSTNGERRTRIYERVL 340
P + SNRVVR Y D FLR+ FV+E +L +L T + ++++RV
Sbjct: 430 SPTVETSNRVVRKYSHVQDRFLRVQFVEESELVRLGKTKYN----------NVKVWKRVE 479
Query: 341 STLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYA 400
L GI IGD+++E LAF +SQ R+++ + F L+ DIR MG F IK V KYA
Sbjct: 480 RALSQGIRIGDRQYEFLAFGSSQLRQSSAYFFCPTDHLSCEDIRAWMGQFDHIKCVAKYA 539
Query: 401 ARLGQSFASSREALHV------------------DSNIGKISAELAETVAKKCGYAIY-T 441
ARLGQ F+++R+ + +G IS L++ + ++ I+
Sbjct: 540 ARLGQCFSTTRDIKGIWVPDIKYIDDIQRNGQCFTDGVGLISKFLSQLIMEEMTLDIFDK 599
Query: 442 PSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLDIL-----ANSKYQREGV 483
P+AFQ R GG K V +R + K+KS +L+I+ + + R+ +
Sbjct: 600 PTAFQFRMGGCKGVLAVWPQAQGMEVHIRKSQEKFKSNFQALEIVRCAARSTATLNRQTI 659
Query: 484 ARLR----LDNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTN----VLKELLNC 535
L +F +E ++ + D+S EA++L++ + N VL ELL
Sbjct: 660 TILESLGVRKKIFMELLKEQISWYENATKDTS---EAIKLLTKFVDENQSSLVLAELLKA 716
Query: 536 GYKPD--AEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYG------ 587
G+K D E F + + + + L+ + RI + ++GC+DE G+L
Sbjct: 717 GFKTDNIQESFTLNIFNLWLSWSFRLLKEKTRIHVPKSAFVLGCVDESGSLRGHSTETEG 776
Query: 588 -----------------------------QGLMVVAKKPCLHPGDMRVLRAVDVPALHHM 618
QG +V + P LHPGD+RV++AV+ P L H+
Sbjct: 777 SSDQLNEKQLPQIFLQLTDPSHEGKTNTIQGKCIVGRNPSLHPGDIRVVQAVNNPKLRHL 836
Query: 619 VDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQF--QPTAYTPAPEKILARD 676
D ++FP+KG+RP SG D DG+ +F+ WD DR+ P ++ +P Y + L RD
Sbjct: 837 KDVIVFPSKGDRPVPAMLSGGDLDGDDFFIIWD-DRLIPEEWNHKPMDYEAPSPRQLDRD 895
Query: 677 VTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGV 736
VT++D+ E+F +Y+ ND+LG+I AH+ +A K S C L +L S D++KTG
Sbjct: 896 VTVDDLREFFVNYMKNDNLGLIAVAHLAFADMYGPK--SQICLRLAELHSQAVDYAKTGE 953
Query: 737 AATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFY 796
A +++ + +P FMEK K+ Y S+ +G LY EV + T + F E F
Sbjct: 954 PAEFGYKMQPERWPHFMEK--KSTYRSKKALGALYDEV-----AKHTFQ-FRPEWGHSFD 1005
Query: 797 DTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIM---EMAKSFD 853
+ +E F + + + + +YD+ + LM Y ++TE E+ + +M ++ ++
Sbjct: 1006 ERILERYEFDKSTLTA-AREIKAQYDSAIRRLMVQYHVETEYELYTGWVMSNTSISSNYK 1064
Query: 854 KKRDLEAISFSVRSLR 869
++ DL + F V R
Sbjct: 1065 RQEDL-GLEFDVVKQR 1079
>gi|396468594|ref|XP_003838211.1| hypothetical protein LEMA_P117350.1 [Leptosphaeria maculans JN3]
gi|312214778|emb|CBX94732.1| hypothetical protein LEMA_P117350.1 [Leptosphaeria maculans JN3]
Length = 1004
Score = 280 bits (717), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 199/660 (30%), Positives = 314/660 (47%), Gaps = 101/660 (15%)
Query: 271 ILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGE 330
+++TP+ +Y P + SNR+ R Y + D F+R+ F DE + + + G
Sbjct: 49 VVITPTMMYVASPLMETSNRITRKYAADADRFIRVKFSDEKNEGV--------LRNMPGN 100
Query: 331 RRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDF 390
R ++ RV + G+V+ + +E LAF NSQ RE+ + +A +A DIR +G F
Sbjct: 101 RAEAVFSRVHHAMTQGVVVAGRYYEFLAFGNSQFREHGAYFYAPTSSKSADDIRISLGKF 160
Query: 391 REIKNVTKYAARLGQSFASSR---------EALHVDSN-------IGKISAELAETVAKK 434
IK V K+ AR+GQ F+++R E V+ N +GK+S +A+ AK+
Sbjct: 161 DHIKTVAKFGARIGQCFSTTRKMRNSVILQEIDDVERNGHTFTDGVGKLSLFIAQMAAKE 220
Query: 435 CGYAIY---TPSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLDI-----L 473
G P+ FQ R GGYK V +R + K+ +E + L+I L
Sbjct: 221 LGLPNPFDDPPTLFQFRLGGYKGVLALDPSIQKSEVHVRPSQHKFVAEYSGLEIIRSSAL 280
Query: 474 ANSKYQREGVARLR----LDNVFERKQREVVARLDAILTDSS-KVQEALELMSSAENTNV 528
A + R+ + L D+VF RKQ+ +V + ++D VQ+ + + + T
Sbjct: 281 ATPFFNRQIIMVLSNLGVSDHVFIRKQQNMVNDYENAMSDEQIAVQKLRKHIDMNQTTLT 340
Query: 529 LKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDE----KGTL 584
+ ++ G+ EPF+ + + + + L+ +ARI +++G ++GC+DE KG +
Sbjct: 341 MAGMVLDGFMKSQEPFVMSLLMLWRSHTIKNLKEKARIAVEDGAFVLGCVDESALLKGHM 400
Query: 585 EYGQ----------------------------------GLMVVAKKPCLHPGDMRVLRAV 610
+ Q GL V+A+ P LHPGD+RV+RAV
Sbjct: 401 DDPQSRLDATRDEKLATLPEIFMQVDDTTKPGHYKIIEGLCVLARNPSLHPGDLRVVRAV 460
Query: 611 DVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPP-LQFQPTAYTPAP 669
D+PAL H+ + V+ P GER + CSG D DG+ Y V WD +P + P +TP
Sbjct: 461 DIPALRHLRNVVVLPQTGERDLASMCSGGDLDGDDYMVLWDSHLLPKIINVPPMDFTPEK 520
Query: 670 EKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVG 729
+ +T ED+ ++F Y+ NDSLG I +AH+ A D C +L KL S
Sbjct: 521 PIETEKPITSEDISDFFVTYMKNDSLGQIAHAHLAQADISADGINDPVCLELAKLHSQAV 580
Query: 730 DFSKTGVAATIPSRLRVKIYPDFMEKQ---DKTWYESQHIVGNLYREVNGIAPSTTTIKS 786
D+ K+G+ A + LR K YP FMEK+ Y S+ I+G LY +V +
Sbjct: 581 DYPKSGIPAMMDRELRPKKYPHFMEKKHLPSNKIYRSRKILGMLYDQVQLVDFQPQWENR 640
Query: 787 FAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIM 846
F K ++ YD D + + +G K YD L LM +GI+TE E S ++
Sbjct: 641 FDKR-VLEAYDLD------GSLLQRAEGIK--VAYDEALRRLMAKHGIQTEFEAWSVFVL 691
>gi|225680005|gb|EEH18289.1| RNA-directed RNA polymerase Rdp1 [Paracoccidioides brasiliensis
Pb03]
Length = 1258
Score = 280 bits (716), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 204/643 (31%), Positives = 314/643 (48%), Gaps = 84/643 (13%)
Query: 273 VTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDE-DLGKLYSTVLSPQISSTNGER 331
VTPS +Y+ P I NRV R Y + D FLR+ F DE ++GK++ S+ N
Sbjct: 388 VTPSTIYYKPPSIDTGNRVFRRYREYADRFLRVRFTDEKNMGKIFP------YSNANIVC 441
Query: 332 RTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFR 391
+Y RV T++NGI IGD+ +E LAFSN+Q RE+ + FAS P LTAA+IR ++G F
Sbjct: 442 MNEVYTRVTLTMKNGITIGDRCYEFLAFSNAQLREHAAYFFASLPHLTAANIRAQLGKFN 501
Query: 392 EIKNVTKYAARLGQSFASSR-------EALHVD----------SNIGKISAELAETVAKK 434
I+NV K+AAR+GQ F+S+R + + +D +G IS LA+ + +
Sbjct: 502 PIRNVAKHAARVGQCFSSTRALTGCPVQIVEIDDIERNGYTFSDGVGLISKFLAQMIQSE 561
Query: 435 CGYAIYT-----PSAFQIRYGGYKVTLRNNMFKYKSESTSLDILANSKYQREGVARLRLD 489
+AI T PS FQ R GG K L + ++ E + L L L
Sbjct: 562 --FAIETLSGEPPSVFQFRLGGCKGILTVSSKAHRREDPFVTSL------------LELW 607
Query: 490 NVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNC---GYKPDAEPFLS 546
V++ K + A++ + + L+ + T LK G E L
Sbjct: 608 RVWQIKYLKEKAKI--------AIDKGAFLLGCLDETGSLKGYFRSKRLGGGATYEQKLD 659
Query: 547 MMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQGLMVVAKKPCLHPGDMRV 606
+P+ IF+Q + +GT E +GL ++A+ P LHPGD+RV
Sbjct: 660 CLPE---------------IFVQILR------HSEGTYEVIEGLCILARNPSLHPGDIRV 698
Query: 607 LRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQF-QPTAY 665
++AVD+P LHH+ D V+ P G+R + CSG D DG+ Y V WD D +P F +P Y
Sbjct: 699 VKAVDIPGLHHLKDVVVLPQTGDRDIASMCSGGDLDGDDYVVIWDQDLLPKDWFEEPMDY 758
Query: 666 TPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLS 725
+ K+L RDVT++D+ ++F Y+ ND L I AH+ A D +C L L
Sbjct: 759 SAPKSKVLDRDVTVDDIIKFFVSYMQNDRLPQIALAHLAIADYSDDGVQDEKCLRLATLH 818
Query: 726 SIVGDFSKTGVAATIPSRLRVKIYPDFMEK---QDKTWYESQHIVGNLYREVNGIAPSTT 782
S D++K+G+ + LR K +P FME+ + + Y S+ I+G LY G+
Sbjct: 819 SAAVDYNKSGIPVRMNQDLRPKKWPHFMERKFAKKDSQYTSRKILGQLYDIAGGV---YL 875
Query: 783 TIKSFAKEGAMQFYDTDMEVN-GFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEML 841
++S + +G + F + N E + F + + EYD L +M + I++E E+
Sbjct: 876 NLQSHSAKGRLPFDQRILNANFEIDEKLLSF-AKELKGEYDADLRRIMAQHEIQSEEEVW 934
Query: 842 SRCIMEMAKSFDKKRDLEAISFSVRSLRKEARAWFNKKKNDSD 884
S ++ A + E I +LR++ R ++K D
Sbjct: 935 STFVLSHANMSKDYKFHEEIGRISSALRQKFRMLCHEKAGGKD 977
>gi|325088329|gb|EGC41639.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus H88]
Length = 1522
Score = 280 bits (715), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 190/632 (30%), Positives = 311/632 (49%), Gaps = 109/632 (17%)
Query: 220 KHALEMLFHL---RECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPS 276
K A E+L H+ + Y P+ + V+ G+ P Y+ +TPS
Sbjct: 567 KKAKELLEHVAMNKAVYYSPMEIFDIPFPDGVTHGRIPEH--------CCYMRSADITPS 618
Query: 277 KVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDED-LGKLYSTVLSPQISSTNGERRTRI 335
+++ P + SNRV R + + D FLR+ F DE +G++YS S+ N + +
Sbjct: 619 TIHYDIPSVDTSNRVFRYHREHADRFLRVRFCDEKYMGRIYSN------SNGNNLCMSEV 672
Query: 336 YERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKN 395
Y RV L++GI+IGD+ +E LAF NSQ RE+ + FAS P LTAA+IR +MGD IK
Sbjct: 673 YARVTRILQHGIIIGDRHYEFLAFGNSQFREHGAFFFASLPHLTAANIRAQMGDLNNIKV 732
Query: 396 VTKYAARLGQSFASSR----------EALHVDSN-------IGKISAELAETVAKKCGYA 438
V KYAARLGQ F+++R E ++ N +G++S L + + G
Sbjct: 733 VAKYAARLGQCFSTTRAVTSCPVQLKEVDDIERNGYVFSDGVGRLSHFLTQMIRSDLGIN 792
Query: 439 IYT---PSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLDILANSKYQREG 482
+ PSAFQ R GG K V +R + +K+ + L+I+ +S +
Sbjct: 793 TPSGQPPSAFQFRLGGCKGILAVSSDAHGQEVHIRKSQYKFAAAHHGLEIIRHSHFSLAT 852
Query: 483 VARLRL---------DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTN----VL 529
+ R + D VF K R ++ +L+ +T+ ++A+ L+ + + N +L
Sbjct: 853 LNRQLILVLSCLGVPDKVFIAKLRMMMDKLEQAMTNE---EQAVHLLQTHVDPNQMTLIL 909
Query: 530 KELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLE---- 585
+++ G++ EPF+S + + + + L+ +A+I + G ++GC+DE TL+
Sbjct: 910 ADMVRDGFQGSKEPFVSSLLELWRTWQIKYLKEKAKIAVDEGAFLLGCIDETKTLKGYFR 969
Query: 586 ---YGQ------------------------------GLMVVAKKPCLHPGDMRVLRAVDV 612
GQ G+ ++A+ P LHPGD+RV++AV+
Sbjct: 970 SSRPGQDATYEERVACLPEIFVQVWRHSEGKYVIIEGVCILARNPSLHPGDIRVVKAVNA 1029
Query: 613 PALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQ-PTAYTPAPEK 671
P+LHH+ D V+ P G+R ++ CSG D DG+ Y V WD D +P F P Y +
Sbjct: 1030 PSLHHLRDVVVLPQTGDRDISSMCSGGDLDGDDYVVIWDQDILPTDWFHDPMDYAAPKPE 1089
Query: 672 ILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDF 731
+L RDVT++D+ +++ +Y+ ND L I AH+ A + + +C L L S D+
Sbjct: 1090 VLDRDVTVDDITKFYVNYMQNDRLPQIALAHLALADYMEEGVKNEKCLQLAALHSAAVDY 1149
Query: 732 SKTGVAATIPSRLRVKIYPDFMEKQDKTWYES 763
+K+G IP +L + P KT Y++
Sbjct: 1150 NKSG----IPVKLTRNLKPRSFATNLKTQYDA 1177
>gi|340975703|gb|EGS22818.1| RNA-directed RNA polymerase-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 1626
Score = 278 bits (712), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 220/743 (29%), Positives = 348/743 (46%), Gaps = 122/743 (16%)
Query: 234 YDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVR 293
+DP+S +Q + PT+ + L V K+ +TP+++YF P + +NRVVR
Sbjct: 544 WDPMSLFSDQ----AALSYCPTTLHIPSHCAL--VRKVTITPTRIYFSTPTVETTNRVVR 597
Query: 294 SYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKK 353
Y D F+R+ F DE V+ +I S+ +R +Y RV LR+GI +G
Sbjct: 598 HYGRFRDYFIRVQFTDE--------VMEGRIRSSYTDREDNVYARVFRVLRHGIRMGKWH 649
Query: 354 FETLAFSNSQERENTLWMFASRPE----LTAADIRERMGDFREIKNVTKYAARLGQSFAS 409
++ LA+ NSQ RE + F E +T IRE MG F IK++ K AARLGQ F++
Sbjct: 650 WKFLAYGNSQIRECGSFFFCEPEEAHGTITCDSIREWMGRFSHIKSIAKLAARLGQCFST 709
Query: 410 SR-----------EALHVDSN-------IGKISAELAETVAKKCGYAIY-TPSAFQIRYG 450
+R + V+ N +GKIS LA +A+ + +Y TPSAFQ R G
Sbjct: 710 TRPLPGITAPTIIKTQDVERNGYCFTDGVGKISPLLAFFIAED--WKVYPTPSAFQFRMG 767
Query: 451 GYK-------------VTLRNNMFKYKSESTSLDILANSKYQREGVARLRL--------- 488
G K V +R + K+ +E L+I+ S + + R +
Sbjct: 768 GCKGVLVTWPDAKGTEVHIRPSQEKFSAEFNGLEIIRCSHFSCATLNRQTITILSCLGVP 827
Query: 489 DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNV----LKELLNCGYKPDAEPF 544
VF E +A DA + D K A++L+++ + N+ + E++ G+ EPF
Sbjct: 828 SYVFLDMMEEQLANYDAAMEDPDK---AIDLLTTYVDENMTTLTMSEMVLDGFMETREPF 884
Query: 545 LSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL-------------------- 584
+ + Q + A ++ L+ +AR+ ++ G ++GC+DE GTL
Sbjct: 885 VRSLLQLWRAWSIKALKEKARLVVKKGAFVLGCVDETGTLRGHSRATEGTKNQPKEVRRD 944
Query: 585 ------------EYG------QGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPA 626
E G GL +V + P LHPGD+R++ AVDVP L H+ D V+FP
Sbjct: 945 QLPQIFLQVPDHENGGTYKVITGLCLVGRNPSLHPGDIRMVEAVDVPQLRHLRDVVVFPL 1004
Query: 627 KGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTI-EDVEEY 685
+G+R + CSG D DG+ YFV WD P P AP+ ++V + ++ E+
Sbjct: 1005 QGDRDVPSMCSGGDLDGDDYFVIWDEKLFPKEWSYPPMNYEAPKAPEEKEVMVANNLAEF 1064
Query: 686 FADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLR 745
F ++ ND L +I +AH+ A P+ A + +C +L +L S D+ KTGVAA RL
Sbjct: 1065 FVLFMKNDRLPLIAHAHLATADKHPEGAKTEKCLELAQLHSTAVDYVKTGVAAKWEKRLD 1124
Query: 746 VKIYPDFMEKQDKTWYESQHIVGNLY----REVNGIAPSTTTIKSFAKEGAMQFYDTDME 801
+ YP FMEK Y S+ ++G LY R+V I K E ++ Y+ + +
Sbjct: 1125 PRTYPHFMEKSRARTYYSKSVLGQLYDMVERQVFDI---QENYKLPFDERIIKRYELNDD 1181
Query: 802 VNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRDLEAI 861
+ K +++YD + +M I+TE E+ + +M + + E +
Sbjct: 1182 --------LLRQARKLKSQYDIAMRRIMGQLEIRTEFEVWTAFVMSKPRVGTDYKVQEKV 1233
Query: 862 SFSVRSLRKEARAWFNKKKNDSD 884
L+K+ R K SD
Sbjct: 1234 GREAACLKKQFRDLCLKAAGASD 1256
>gi|358393612|gb|EHK43013.1| hypothetical protein TRIATDRAFT_225118 [Trichoderma atroviride IMI
206040]
Length = 1272
Score = 277 bits (709), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 211/736 (28%), Positives = 344/736 (46%), Gaps = 126/736 (17%)
Query: 218 DGKHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSK 277
D KH LE+L E ++P+ R+ ++ P PA + + K VTP+
Sbjct: 403 DAKHRLEVLVDQEEVVHNPMDIFA---RRTMA----PYRPATRIPHYCVLARKATVTPTS 455
Query: 278 VYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDE-DLGKLYSTVLSPQISSTNGERRTRIY 336
+ P + SNRV+R + D FLR+ FVDE + G++ + N + I+
Sbjct: 456 LLLSSPAVETSNRVLRYFNQAQDRFLRVQFVDEAESGRM----------TMNSHNKEEIW 505
Query: 337 ERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNV 396
+++L TL GI IGD+++E LAF +SQ R++ + F ++ DIR+ MG I+ V
Sbjct: 506 KKLLRTLYEGIQIGDRRYEFLAFGSSQLRQSGAYFFCPTDHISCQDIRQWMGQVSHIRIV 565
Query: 397 TKYAARLGQSFASSREALHV------------------DSNIGKISAELAETVAKKCGYA 438
KYAARLGQ F+++RE V +G IS +A + ++
Sbjct: 566 AKYAARLGQCFSTTREMKGVPIPDVRPIADIERNGYCFTDGVGMISGFMARMIVEELTLE 625
Query: 439 IYT-PSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLDILANSKY-----Q 479
++ PSAFQ R GG K V +R + K+K+++ +L+I+ +KY
Sbjct: 626 VFNDPSAFQFRMGGCKGVLVVWPQAKKSEVYIRESQEKFKADAKNLEIIKCAKYTSATLN 685
Query: 480 REGVARLRLDNVFERKQREVVARLDAILTDSSK-----VQEALELMSSAENTNVLKELLN 534
R+ + L V ++ +++ + ++ +++K V + + ++T VL ELL
Sbjct: 686 RQTITILEHLGVPKKAFMDILEKQISLYEEAAKDNRVAVGMLKKCVDENQSTLVLAELLQ 745
Query: 535 CGYKPD--AEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL-------- 584
G+K EPF+ + + + +L L+ +ARI I+ ++GC+DE GTL
Sbjct: 746 AGFKTKNCQEPFVVNLLNLWRSWSLKLLKEKARIAIEQSAFVLGCVDETGTLRGHSNATE 805
Query: 585 --------------------------EYGQGLMVVAKKPCLHPGDMRVLRAVDVPALHHM 618
+ +G+ VV + P LHPGD+RV+ AVD+P LHH+
Sbjct: 806 GTSDKDVNKLPQIFLQVSDSKIYDTTKVIKGICVVGRNPSLHPGDIRVVEAVDIPELHHL 865
Query: 619 VDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTA-YTPAPEKILARDV 677
D V+FP+ G+RP N SG D DG+ +FV W+ IP P Y+ P L RDV
Sbjct: 866 KDVVVFPSTGDRPVPNMLSGGDLDGDDFFVIWEPSLIPEKWNHPAMNYSSPPPPKLDRDV 925
Query: 678 TIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVA 737
+ D+ ++F +Y+ ND L +I AH+ A ++ S C L +L S D+ KTG
Sbjct: 926 NVNDLRDFFVNYMKNDVLPLIATAHL--ALADRFDPASPICLRLAELHSKAVDYPKTGDP 983
Query: 738 ATIPSRL-RVKIYPDFMEKQDKTWYESQHIVGNLYREV--NGIAPSTTTIKSFAKEGAMQ 794
A + + +P FMEKQ + Y+S +G +Y V I +F K +
Sbjct: 984 AEFNHDMYNPQSWPHFMEKQQR--YKSARALGAIYDRVIKQTIEFRPDWENAFDKR-ILN 1040
Query: 795 FYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIM-------- 846
Y D G + A Q G +YD + ++ ++ + TE E+ + M
Sbjct: 1041 RYQLD---TGMLKSARQIKG-----QYDAAVRRILSHHNLGTEFELYTSWAMTKPAIGSD 1092
Query: 847 -----EMAKSFDKKRD 857
E+ + FD +D
Sbjct: 1093 YKRQEELGREFDAIKD 1108
>gi|154290540|ref|XP_001545863.1| hypothetical protein BC1G_15614 [Botryotinia fuckeliana B05.10]
Length = 1173
Score = 276 bits (705), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 204/672 (30%), Positives = 316/672 (47%), Gaps = 109/672 (16%)
Query: 267 YVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDN--FLRLSFVDEDL-GKLYSTVLSPQ 323
+ K VTP+ + F P + +NRV+R Y E FLR+ F DE G++ S
Sbjct: 223 FSRKATVTPTSILFNSPTVETTNRVLRHYSKENQEGRFLRVQFTDEKFEGRINSCA---- 278
Query: 324 ISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADI 383
+ R I+ RV + NGI IGD+ +E LAF NSQ REN + F L+ DI
Sbjct: 279 ----DKIRNDAIFTRVFRVISNGIRIGDRHYEFLAFGNSQFRENGAYFFCPSANLSCNDI 334
Query: 384 RERMGDFREIKNVTKYAARLGQSFASSREALHVDS------------------NIGKISA 425
R+ MG F I V KYAARLGQ F+++R + + +GKIS
Sbjct: 335 RQWMGTFSHINVVAKYAARLGQCFSTTRAIKGLSAPDIVKIPDIERGRYCFTDGVGKISP 394
Query: 426 ELAETVAKKCGYAI-YTPSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLD 471
LA+ +A + + PSAFQ R GG K V +R + K+ + L+
Sbjct: 395 YLAQMIASELKLRVDLAPSAFQFRLGGCKGILVVSPDAKDNEVHIRKSQQKFTAAYNGLE 454
Query: 472 ILANSKYQREGVARLRL---------DNVFERKQREVVARLDAILTDSSKVQEALELMS- 521
I+ S++ + R + D VF + ++ + +++++ AL L++
Sbjct: 455 IIRCSQFSSATLNRQTITILSALGVKDEVFLKMLSRQLSDYQSAMSNNAI---ALGLLNR 511
Query: 522 ----SAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGC 577
+ N+ +LN G+ + EPF+ + + A ++ L+ +A+I ++NG ++GC
Sbjct: 512 YIDDNHMTINIAGMILN-GFMSEKEPFVLSLLHLWRAWSIKLLKEKAKIIVENGAFVLGC 570
Query: 578 LDEKGTLE--------YG---------------------------QGLMVVAKKPCLHPG 602
+DE TL YG +G+ +V + P LHPG
Sbjct: 571 VDETNTLRGYTKPTVAYGTTYKETELPQIFIQVPDRENTTQYNVIEGICLVGRNPSLHPG 630
Query: 603 DMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPP-LQFQ 661
D+RV++AV++PALHH+ D V+FP GER + CSG D DG+ +FV WD D P +
Sbjct: 631 DLRVVQAVNIPALHHLRDVVVFPQSGERDVPSMCSGGDLDGDDFFVIWDKDLQPTEWNCE 690
Query: 662 PTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDL 721
P +Y L R V + D++++F Y+ NDSL I +AH+ A + +C L
Sbjct: 691 PMSYAALDPVALKRPVVVTDLQKFFVKYMKNDSLPSIAHAHLAQADYQKQGIKDPKCLKL 750
Query: 722 VKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKT---WYESQHIVGNLYREVNGIA 778
+L S D+ KTG AT+ L +P FMEK + Y SQ I+G LY +V +
Sbjct: 751 AELHSKAVDYVKTGQPATMQKYLAPPKWPHFMEKIHQPASKQYHSQKILGQLYDKVESVD 810
Query: 779 PSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEA 838
+ F K ++ Y+ D N + A Q +T+YD + ++ IKTE
Sbjct: 811 FVPQYEEPFDKR-ILRAYELD---NATLKAARQ-----TKTKYDTAMRRILAQQDIKTEF 861
Query: 839 EMLSRCIMEMAK 850
E+ S I+ K
Sbjct: 862 EVWSTFILSKPK 873
>gi|13641451|gb|AAK31733.1| suppressor of ascus dominance [Neurospora crassa]
Length = 1638
Score = 276 bits (705), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 192/616 (31%), Positives = 296/616 (48%), Gaps = 93/616 (15%)
Query: 234 YDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVR 293
+DP+ E ++ H + FPTS + +V ++ +TP+++YF P + +NRV+R
Sbjct: 506 FDPM----ELFKDHAALAYFPTS--FMIPNHCAWVRRVTITPTRIYFSTPCVEPTNRVIR 559
Query: 294 SYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKK 353
+ D F+R+ F DE VL +I S GE ++ RV L G+ +G
Sbjct: 560 QWKHAQDYFIRIQFTDE--------VLEGRIKS--GEAELPLFLRVYRVLEKGVAMGPWH 609
Query: 354 FETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSR-- 411
++ LAF NSQ RE +MF + LT +R MG F IK + KYAARLGQ F+++R
Sbjct: 610 WKFLAFGNSQIREAGAFMFCEQSNLTGDMMRAWMGRFSHIKVIAKYAARLGQCFSTTRLV 669
Query: 412 ----------------EALHVDSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK-- 453
+ +GKIS LA+ VA PSA+Q R GG K
Sbjct: 670 PGIPAPRIVTIPDVEKDGFCFTDGVGKISPLLAKIVAHDWSID-PPPSAYQFRMGGCKGV 728
Query: 454 -----------VTLRNNMFKYKSESTSLDILANSKY-----QREGVARLR----LDNVFE 493
V +R + K+ +E L+++ S++ R+ +A L D VF
Sbjct: 729 LVTWPDVKGMEVHIRKSQEKFVAEFNGLEVVRCSQFSTATLNRQIIAVLSSLGVPDQVFV 788
Query: 494 RKQREVVARLDAILTDSSKVQEALE-LMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTF 552
+ ++ +A + D K L+ + T ++ E+L G+ EPF+ + Q +
Sbjct: 789 DMMEQQLSDFNAAMEDKQKATAILKTFIDENHMTPIIAEMLAYGFMGSQEPFVRTLLQLW 848
Query: 553 HASNLLELRTRARIFIQNGQAMMGCLDEKGTLE--------------------------- 585
+ ++ L+ +AR+ ++ ++GC+DE GTL+
Sbjct: 849 RSWSIKTLKEKARLNVEKSAFVLGCVDETGTLKGHMKVIEDWKDVSSEKLPQIFLQIPDD 908
Query: 586 ------YGQGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGS 639
G VV + P LHPGD+RV+ AVDVPAL H+ D V+FP G+R + CSG
Sbjct: 909 VNGGYRVITGTCVVGRNPSLHPGDIRVVEAVDVPALRHLRDVVVFPLTGDRDVPSMCSGG 968
Query: 640 DQDGEIYFVCWDHDRIPPLQFQPTAYT-PAPEKILARDVTIEDVEEYFADYIVNDSLGII 698
D DG+ +FV WD IP + P + P K LA + T+ ++ +F Y+ ++L +I
Sbjct: 969 DLDGDDFFVIWDPLLIPKERSHPPMISEPIAGKELATEPTVNNLITFFVLYMKYNNLPLI 1028
Query: 699 CNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDK 758
+AH+ A +E + S +C +L L S+ D+ KTGVAA P RL K +P FMEK
Sbjct: 1029 AHAHLATADAEVEGVKSPKCLELASLHSMAVDYVKTGVAAEFPRRLDPKTWPHFMEKNRH 1088
Query: 759 TWYESQHIVGNLYREV 774
T Y S +G LY V
Sbjct: 1089 T-YHSVTALGKLYDMV 1103
>gi|322705481|gb|EFY97066.1| suppressor of ascus dominance [Metarhizium anisopliae ARSEF 23]
Length = 1315
Score = 276 bits (705), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 228/796 (28%), Positives = 376/796 (47%), Gaps = 125/796 (15%)
Query: 165 SVSIGQSSAICLELPSRALIPKALK---DFFHYKESLVQFTLLPGFVFSCNSDLNQDGKH 221
+V+ Q SA+ L +P + +P ++ + + L ++ + F+ N+ D H
Sbjct: 351 AVTASQPSAL-LSMPQKIHLPFEVRYQLEVCISRGVLNEYAIGIDFLQELNNLQTMDATH 409
Query: 222 ALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFC 281
LE L E +DP+ + + F PA + YV K +T + + F
Sbjct: 410 RLEYLVDQNEILFDPMKLFSME-----DATAF--VPAARIPHYCTYVRKASITATTIRFN 462
Query: 282 GPEISLSNRVVRSYPDEIDNFLRLSFVDE-DLGKLYSTVLSPQISSTNGERRTRIYERVL 340
P + SNRVVR Y D FLR+ FV+E +L +L T + +I++RV
Sbjct: 463 SPTVETSNRVVRKYSHLQDRFLRVQFVEESELVRLGKTKY----------KNDKIWKRVE 512
Query: 341 STLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYA 400
L GI IGD+++E LAF +SQ R+++ + F L+ DIR MG F IK V KYA
Sbjct: 513 RALSQGIRIGDRQYEFLAFGSSQLRQSSAYFFCPTGHLSCEDIRAWMGQFDHIKCVAKYA 572
Query: 401 ARLGQSFASSREALHV------------------DSNIGKISAELAETVAKKCGYAIY-T 441
AR+GQ F+++R+ + +G IS L++ + ++ I+
Sbjct: 573 ARIGQCFSTTRDIKGIWVPDIKYIDDIQRNDQCFTDGVGLISKFLSQLIMEEMTLDIFDK 632
Query: 442 PSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLDIL-----ANSKYQREGV 483
P+AFQ R GG K V +RN+ K+KS+ L+I+ + + R+ +
Sbjct: 633 PTAFQFRMGGCKGVLAVWPQAQGMEVHIRNSQEKFKSDFQGLEIVRCAARSTATLNRQTI 692
Query: 484 ARLRLDNV----FERKQREVVARLDAILTDSSKVQEALELMSSAENTN----VLKELLNC 535
L V F +E ++ + D+S EA++L++ + N VL ELL
Sbjct: 693 TILESLGVPKKMFMALLKEQISWYENAAKDTS---EAIKLLTKFVDENQSSLVLAELLKA 749
Query: 536 GYKPDA--EPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL--------- 584
G+ D EPF + + + LR + RI + ++GC+DE G+L
Sbjct: 750 GFMTDNVREPFTLNTFNLWLSWSFRLLREKTRIHVPKSAFVLGCVDESGSLRGHSIETEG 809
Query: 585 --------------------------EYGQGLMVVAKKPCLHPGDMRVLRAVDVPALHHM 618
QG +V + P LHPGD+RV++AV+ P L H+
Sbjct: 810 CSDQLNENKLPQIFLQLTDPSHEGKTNIIQGKCIVGRNPSLHPGDIRVVQAVNNPKLRHL 869
Query: 619 VDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQF--QPTAYTPAPEKILARD 676
D ++FP+KG+RP SG D DG+ +F+ WD DR+ P ++ +P Y + L RD
Sbjct: 870 KDVIVFPSKGDRPVPAMLSGGDLDGDDFFIIWD-DRLIPKEWNHKPMDYQAPNPRQLDRD 928
Query: 677 VTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGV 736
VT++D+ E+F +Y+ ND+LG+I AH+ +A K S C L +L S D++KTG
Sbjct: 929 VTVDDLREFFVNYMKNDNLGLIAVAHLAFADMHGPK--SQICLRLAELHSQAVDYAKTGE 986
Query: 737 AATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFY 796
A +++ + +P FMEK K+ Y S +G L+ EV + T + F E F
Sbjct: 987 PAEFGHKMQPERWPHFMEK--KSTYRSNKALGALFDEV-----AKHTFQ-FRPEWEHPFD 1038
Query: 797 DTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIM---EMAKSFD 853
+E F +++ + + +YD+ + LM Y ++TE E+ + +M ++ ++
Sbjct: 1039 KRILERYEF-DMSTLTTAREIKAQYDSAIRRLMVQYHVETEYELYTGWVMSNTSISSNYK 1097
Query: 854 KKRDLEAISFSVRSLR 869
++ DL + F V R
Sbjct: 1098 RQEDL-GLEFDVVKQR 1112
>gi|330935167|ref|XP_003304850.1| hypothetical protein PTT_17559 [Pyrenophora teres f. teres 0-1]
gi|311318353|gb|EFQ87064.1| hypothetical protein PTT_17559 [Pyrenophora teres f. teres 0-1]
Length = 1458
Score = 275 bits (704), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 190/660 (28%), Positives = 318/660 (48%), Gaps = 101/660 (15%)
Query: 271 ILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGE 330
+++TP+ ++ P + SNR++R Y + D F+R+ F DE Q+ S
Sbjct: 575 VVITPTMMHVASPVMETSNRIIRKYAADSDRFIRVKFSDEKT--------EGQLRSMPNG 626
Query: 331 RRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDF 390
+ +++RV +R+GIV+ + +E LAF NSQ RE+ + +A +A DIR +GDF
Sbjct: 627 KSEAVFDRVRRAMRHGIVVAGRYYEFLAFGNSQFREHGAYFYAPTSSKSADDIRLSLGDF 686
Query: 391 REIKNVTKYAARLGQSFASSR---EALHVD-------------SNIGKISAELAETVAKK 434
+IK V K+ ARLGQ F+++R E + + +GK+S +A+ AK+
Sbjct: 687 TQIKTVAKFGARLGQCFSTTRAMREKVKITPIPDIERNGHTFTDGVGKLSPFVAKMAAKE 746
Query: 435 CGYAIY---TPSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLDI-----L 473
G + PS FQ R GG K V +R + K+ ++ L+I L
Sbjct: 747 LGLSNAFDDPPSLFQFRLGGCKGVLALDLNITGTEVHIRPSQQKFHAKFMGLEIIRSSAL 806
Query: 474 ANSKYQREGVARLR----LDNVFERKQREVVARLDAILTDSS-KVQEALELMSSAENTNV 528
A + R+ + L D+V +KQ+E+V + +TD S +Q+ + + ++T
Sbjct: 807 ATPFFNRQIIVVLSHLGVPDHVIIKKQQEMVNDYETAMTDESIALQKLRKHIDMNQSTLT 866
Query: 529 LKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDE-------- 580
+ ++ G+ +PF+ + + + A + L+ +ARI I++G ++GC+DE
Sbjct: 867 MAAMVLDGFMKIQDPFMMSLLKLWRACTIKNLKEKARIAIEDGAFVLGCVDETAKLKGHM 926
Query: 581 ------------------------------KGTLEYGQGLMVVAKKPCLHPGDMRVLRAV 610
KG + +G+ ++A+ P LHPGD+RV+RAV
Sbjct: 927 NDPQSRLDATRDEKLATLPEIFLQVDDTDKKGHYKIIEGVCILARNPSLHPGDLRVVRAV 986
Query: 611 DVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIP-PLQFQPTAYTPAP 669
++P L H+ + V+ P G+R N CSG D DG+ Y V WD IP + P +TP
Sbjct: 987 NIPELRHLKNVVVLPQTGDRDLANMCSGGDLDGDDYMVLWDAALIPKTINVPPMDFTPEK 1046
Query: 670 EKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVG 729
+ + ++ D+ E+F Y+ ND+LG I +AH+ A D C L +L S
Sbjct: 1047 PEEIDGPISAADIGEFFVTYMKNDTLGQIAHAHLAQADFRADGVNDETCLALAELHSKAV 1106
Query: 730 DFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYE---SQHIVGNLYREVNGIAPSTTTIKS 786
DF K+G+ A + LR + +P FMEK+ + Y+ S I+G LY +V +
Sbjct: 1107 DFPKSGLPAEMDRELRPRKWPHFMEKKHISQYKIYRSTKILGMLYDQVQLVDFKPQWENP 1166
Query: 787 FAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIM 846
F K + +D D M+ + ++ YD+ L LM +GI+TE E S ++
Sbjct: 1167 FDKR-VLDAFDLD--------ATMKAKAAEIKSSYDDSLRRLMAKHGIRTEFEAWSVFVL 1217
>gi|169595008|ref|XP_001790928.1| hypothetical protein SNOG_00237 [Phaeosphaeria nodorum SN15]
gi|111070612|gb|EAT91732.1| hypothetical protein SNOG_00237 [Phaeosphaeria nodorum SN15]
Length = 1523
Score = 275 bits (704), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 197/663 (29%), Positives = 309/663 (46%), Gaps = 126/663 (19%)
Query: 272 LVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGER 331
++TPS ++ P + SNR+ R Y D FLR+ F DE + ++ + + +T
Sbjct: 609 IITPSTIHVASPIMETSNRITREYAAIADRFLRVKFSDEKTEGVLRSIPNGKADAT---- 664
Query: 332 RTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFR 391
++RV ++NGIV+ + +E LAF NSQ RE+ + +A +A DIR +G F
Sbjct: 665 ----FDRVRRAMKNGIVVAGRYYEFLAFGNSQFREHGAYFYAPTSTKSADDIRSSLGRFD 720
Query: 392 EIKNVTKYAARLGQSFASSREALHVDSNI-----------------GKISAELAETVAKK 434
IK V K+ ARLGQ F+++R A+ V I GK+S LA+ A++
Sbjct: 721 HIKTVAKFGARLGQCFSTTR-AMRVKVTIVKIPDIERNGYCFTDGVGKLSLFLAQMAAQE 779
Query: 435 CGYAIY---TPSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLDI-----L 473
G + PS +Q R GG K V +R + K++++ L+I L
Sbjct: 780 LGLSNAFDDPPSLYQFRLGGCKGVLALDPKITGNEVHIRPSQLKFEAKFLGLEIIRSSAL 839
Query: 474 ANSKYQREGVARLR----LDNVFERKQREVVARLDAILTD-SSKVQEALELMSSAENTNV 528
A + R+ + L DNV +KQ+E+V + +TD + + + + + + T
Sbjct: 840 ATPFFNRQIIVVLSDLGVPDNVLIQKQQEMVNDYEQAMTDKDTAIAKLRKHIDMNQTTLT 899
Query: 529 LKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLE--- 585
+ ++ G+ EPF+ + + + A+ + L+ +ARI I++G ++GC+DE GTL+
Sbjct: 900 MAGMVIDGFMESREPFMMSLLRLWRAATIKNLKEKARIAIEDGAFVLGCVDESGTLKGHL 959
Query: 586 -------------------------------------YGQGLMVVAKKPCLHPGDMRVLR 608
+G+ V+A+ P LHPGD+RV+R
Sbjct: 960 NDPQSRSDASRQDKMQTLPEIFLQVDDTEANKRGHYKIVKGVCVLARNPSLHPGDLRVVR 1019
Query: 609 AVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPA 668
AVDVPALHH+ + V+ P G+R N CSG D DG+ Y V WD D IP L
Sbjct: 1020 AVDVPALHHLKNVVVLPQTGDRDLANMCSGGDLDGDDYMVLWDKDLIPEL---------- 1069
Query: 669 PEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIV 728
+T+ D+ ++F Y+ NDSLG I AH+ A + S C +L KL S
Sbjct: 1070 --------ITLSDISDFFVTYMQNDSLGQIAYAHLAQADVNHEGVGSGTCLELAKLHSQA 1121
Query: 729 GDFSKTGVAATIPSRLRVKIYPDFMEK---QDKTWYESQHIVGNLYREVNGI--APSTTT 783
D+ K+G+ A + LR K +P FMEK Q Y S ++G LY +V + P
Sbjct: 1122 VDYPKSGIPAQMSQDLRPKRWPHFMEKKHLQAHKIYRSTRVLGKLYDQVELVDFKPQWEN 1181
Query: 784 IKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSR 843
F + Y+ D E + + YD LM +GI+TE E S
Sbjct: 1182 AFDFR---ILDAYEVDEE--------LLSKATDIKALYDEAFKRLMAKHGIRTEFEAWSV 1230
Query: 844 CIM 846
++
Sbjct: 1231 FVL 1233
>gi|380480880|emb|CCF42174.1| RNA dependent RNA polymerase [Colletotrichum higginsianum]
Length = 1271
Score = 275 bits (704), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 200/686 (29%), Positives = 320/686 (46%), Gaps = 103/686 (15%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDL-GKLYSTVLSPQISS 326
+ K++VTPS ++FC P + SNRV+R Y D F+R+ F DE GK+Y+
Sbjct: 444 IRKVIVTPSTMHFCSPSVEASNRVLRKYSSHQDRFIRVQFTDELYKGKIYN--------- 494
Query: 327 TNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRER 386
+ +++R+ L+ GI IG++ +E LAF NSQ RE ++ F +T DIR+
Sbjct: 495 ---DAGDEVFDRIYRALKRGIKIGNRIYEFLAFGNSQIRECAVYFFCPTDYVTCDDIRKW 551
Query: 387 MGDFREIKNVTKYAARLGQSFASSREALHV------------------DSNIGKISAELA 428
MG+F IKNV KYAAR+GQ F+++RE + +GKIS LA
Sbjct: 552 MGEFNHIKNVAKYAARIGQCFSTTREIRGITVPRIEQAKDIQRGEYCFSDGVGKISKLLA 611
Query: 429 ETVAKKCGY-AIYTPSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLDILA 474
E V + G A+ PSAFQ R GG K V +R + K+K++ L+I+
Sbjct: 612 EMVVNEMGQEAVGIPSAFQFRMGGCKGMLAVWPDAKGLEVHIRPSQEKFKAQFNGLEIIK 671
Query: 475 NSKYQREGVAR--LRLDNVFERKQREVVARLDAILTDSSKVQE----ALELMSSAENTNV 528
+++Y + R + + K ++ + + K + A L+ + N+
Sbjct: 672 SAQYSVATLNRQTITILTTLGVKSEPILKLAKQQIQNYEKAMDDQVAATGLLGKYIDENM 731
Query: 529 ----LKELLNCGY--KPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKG 582
+K+L+ G+ K EPF+ + + ++ L+ +AR+ I+ ++GCLDE G
Sbjct: 732 TSLTIKDLVCWGFMDKEVQEPFVLTILNLWRIWSMKLLKEKARVIIEQSAFLLGCLDETG 791
Query: 583 TL----------------------------EYGQ-----GLMVVAKKPCLHPGDMRVLRA 609
L E G+ G+ +V + P LHPGD+RV+ A
Sbjct: 792 ILRGHSKATEGKTTRNIHDLPQIFLQIPNSEDGKHYCVTGVCIVGRNPSLHPGDIRVVEA 851
Query: 610 VDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAP 669
VDVP LHH+ + V+FP+ G+R + SG D DG+ +FV W+ D IP P AP
Sbjct: 852 VDVPTLHHLKNVVVFPSIGDRDVPSMLSGGDLDGDDFFVIWNPDLIPREWHHPPMNYIAP 911
Query: 670 E-KILARD-VTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSI 727
K+L R V + D+ +F YI ND L ++ AH+ A A +RC L +L S
Sbjct: 912 RAKVLRRGFVKVSDLRTFFVRYIQNDCLALVATAHLALADHSRVGAKDHRCLKLAELHSK 971
Query: 728 VGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSF 787
D+ KT A P L K +P FM + + Y S +G +Y + + + F
Sbjct: 972 AVDYVKTADPAKFPPDLHPKAWPHFMNR--RCTYRSSSALGQIYDMIQDQSLNPLYGNKF 1029
Query: 788 AKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIME 847
+F +D + ++V +T+YD L LM + ++TE E + ++
Sbjct: 1030 DTRILTRFPLSDEILRKARKV---------KTQYDTSLRRLMSHRDVQTEFEAWTGFVLS 1080
Query: 848 MAKSFDKKRDLEAISFSVRSLRKEAR 873
+ + E I +L++ R
Sbjct: 1081 KPRVGSDYKQHEDIGRESSALKQRYR 1106
>gi|189202022|ref|XP_001937347.1| RNA-directed RNA polymerase Rdp1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187984446|gb|EDU49934.1| RNA-directed RNA polymerase Rdp1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 1604
Score = 275 bits (703), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 189/661 (28%), Positives = 315/661 (47%), Gaps = 103/661 (15%)
Query: 271 ILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGE 330
+++TP+ ++ P + SNR++R Y + D F+R+ F DE Q+ S
Sbjct: 653 VVITPTMMHVASPVMETSNRIIRKYAADSDRFIRVKFSDEKT--------EGQLRSMPNG 704
Query: 331 RRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDF 390
+ +++RV +R+GIV+ + ++ LAF NSQ RE+ + FA ++A DIR +GDF
Sbjct: 705 KSGAVFDRVRRAMRHGIVVAGRYYDFLAFGNSQFREHGAYFFAPTSSMSANDIRLSLGDF 764
Query: 391 REIKNVTKYAARLGQSFASSR----------------EALHVDSNIGKISAELAETVAKK 434
+K V K+ ARLGQ F+++R +GK+S +A+ A++
Sbjct: 765 TNVKTVAKFGARLGQCFSTTRAMSQKVSIKPIPEIMRNGYTFTDGVGKLSPFVAKMAAEE 824
Query: 435 CGYAIY---TPSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLDILANSKY 478
G + PS FQ R GG K V +R + K++++ L+I+ +S +
Sbjct: 825 LGLSNAFDDPPSLFQFRLGGCKGVLALDPTITGTEVHIRPSQQKFQAKFMGLEIIRSSAF 884
Query: 479 -----QREGVARLR----LDNVFERKQREVVARLDAILTDSS-KVQEALELMSSAENTNV 528
R+ + L D+V +KQ+E+V + +TD S +Q+ + + + T
Sbjct: 885 ATPFFNRQIIVVLSHLGVPDHVIIKKQQEMVNDYETAMTDESVAIQKLRKHIDMNQTTLA 944
Query: 529 LKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDE-------- 580
+ ++ G+ +PF+ + + + A + L+ +ARI I++G ++GC+DE
Sbjct: 945 MAAMVLDGFMKVQDPFMMSLLKLWRACTIKNLKEKARIAIEDGAFVLGCVDETAKLKGHM 1004
Query: 581 ------------------------------KGTLEYGQGLMVVAKKPCLHPGDMRVLRAV 610
KG + +G+ ++A+ P LHPGD+RV+RAV
Sbjct: 1005 NDPQSRLDATRDEKLATLPEIFLQVDDTNKKGHYKIIEGVCILARNPSLHPGDLRVVRAV 1064
Query: 611 DVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIP-PLQFQPTAYTPAP 669
++P L H+ + V+ P G+R N CSG D DG+ Y V WD IP + P +TP
Sbjct: 1065 NIPELQHLKNVVVLPQTGDRDLANMCSGGDLDGDDYMVLWDTALIPKTINAPPMDFTPEK 1124
Query: 670 EKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVG 729
+ + + + E+F Y+ ND+LG I +AH+ A S D C L +L S
Sbjct: 1125 PEEIEGPIGAAHMGEFFVTYMKNDTLGQIAHAHLAQADSRDDGVNDQTCLALAELHSKAV 1184
Query: 730 DFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQH---IVGNLYREVNGIAPSTTTIKS 786
DF K+G+ A + LR K +P FMEK+ Y+ H I+G LY +V +
Sbjct: 1185 DFPKSGLPAEMNRELRPKKWPHFMEKKHMPEYKIYHSTKILGMLYDQVQLVDFKPQWENP 1244
Query: 787 FAKEGAMQFYDTDMEVNGFK-EVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCI 845
F K +N F E M+ + K ++ YD+ L LM +GI+TE E S +
Sbjct: 1245 FDKR----------ILNAFDLEETMKVEAAKIKSSYDDALRRLMAKHGIRTEFEAWSVFV 1294
Query: 846 M 846
+
Sbjct: 1295 L 1295
>gi|302918417|ref|XP_003052653.1| hypothetical protein NECHADRAFT_91974 [Nectria haematococca mpVI
77-13-4]
gi|256733593|gb|EEU46940.1| hypothetical protein NECHADRAFT_91974 [Nectria haematococca mpVI
77-13-4]
Length = 1250
Score = 275 bits (702), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 206/677 (30%), Positives = 318/677 (46%), Gaps = 111/677 (16%)
Query: 256 SPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKL 315
SP + V K++VTP+ + F P + +SNRV+R Y D FLR+ FV+E L
Sbjct: 408 SPIARIPQYCALVRKVVVTPTTIRFNSPAVEMSNRVMRQYKHIQDRFLRIQFVEE----L 463
Query: 316 YSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASR 375
+T ++ N ++ IY+RVL T+ GI IGD+ +E LAF +SQ R N + F
Sbjct: 464 ENTRIA-----INKDQNDEIYKRVLRTMYQGIRIGDRVYEFLAFGSSQLRVNGAYFFCPT 518
Query: 376 PELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDS----------------- 418
+ DIR+ MG F IK V KYAARLGQ F+++RE + S
Sbjct: 519 EHTSCDDIRKWMGQFSHIKVVAKYAARLGQCFSTTREVRGISSPAIREIPDIERNGHCFS 578
Query: 419 -NIGKISAELAETVAKKCGYAIY-TPSAFQIRYGGYK-------------VTLRNNMFKY 463
+GKIS +A+ V + I+ PSAFQ R GG K V +R + K+
Sbjct: 579 DGVGKISPFVAQLVNEDMALDIFDKPSAFQFRMGGCKGVLTVWPDAKGMEVHVRESQKKF 638
Query: 464 KSESTSLDIL-----ANSKYQREGVARLRLDNV----FERKQREVVARLDAILTDSSKVQ 514
+++S L+I+ A + R+ + L V F + + + + D+
Sbjct: 639 EADSKGLEIIRCAGFATATLNRQTIIILESLGVPIKAFTDLLDQQLGSYEQAMQDNGVAI 698
Query: 515 EALELMSSAENTN-VLKELLNCGYKPDA--EPFLSMMPQTFHASNLLELRTRARIFIQNG 571
E L TN V+ ELL +K D EPF+ + + A +L L+ +ARI ++
Sbjct: 699 EMLAKFVDEHQTNLVIAELLKAEFKTDELREPFVINVLSLWRAWSLKILKEKARIQVEKS 758
Query: 572 QAMMGCLDEKGTL----------------------------------EYGQGLMVVAKKP 597
++GC+DE TL QG+ +V + P
Sbjct: 759 AFVLGCVDETETLRGHSKDSEGSKPKDVNMLPQIFLQITDSRNYNKTHIIQGVCIVGRNP 818
Query: 598 CLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIP- 656
LHPGD+RV+ AVD L H+ D V+FPA G+RP N SG D DG+ +FV W+ IP
Sbjct: 819 SLHPGDIRVVEAVDCSKLRHIKDVVVFPATGDRPVPNMLSGGDLDGDDFFVIWEPSLIPK 878
Query: 657 PLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSN 716
+ P Y K L RDV ++D+ +F Y+ ND L +I +H+ +++ MS
Sbjct: 879 TWNYSPMDYAAPKPKELDRDVNVDDLRNFFVKYLKNDKLPLIATSHL--GFADQLGPMSP 936
Query: 717 RCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNG 776
+C +L +L S D+ KTG AT+ + + +P FMEK K +Y S +G +Y +V
Sbjct: 937 KCLELAELHSKAVDYPKTGEPATLRRDQQPRKWPHFMEK--KQFYHSDKALGVIYDKV-- 992
Query: 777 IAPSTTTIKSFAKEGAMQF---YDTDMEVNGFKEVAMQFD----GFKYRTEYDNKLGNLM 829
K +QF +D+ + K+ + + K +++YD + L+
Sbjct: 993 ----------VNKAKVIQFNPIWDSPFDDRITKKYKLDNELLKAARKVKSQYDTAVRRLL 1042
Query: 830 DYYGIKTEAEMLSRCIM 846
+ +KTE E+ + M
Sbjct: 1043 SQHDLKTEFELWTGFAM 1059
>gi|310791166|gb|EFQ26695.1| RNA dependent RNA polymerase [Glomerella graminicola M1.001]
Length = 1269
Score = 271 bits (694), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 215/766 (28%), Positives = 343/766 (44%), Gaps = 130/766 (16%)
Query: 198 LVQFTLLPGFVFSCNSDLNQDGKHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSP 257
L ++++ F+ + K LE L + +DP+ ++ + FP +
Sbjct: 379 LSEYSITQAFIDELSRMDKDRAKWMLEYFADLAKRVWDPMKMFEDEDARFF----FPNA- 433
Query: 258 AVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDL-GKLY 316
++ + KI VTPS ++FC P + SNRV+R Y D FLR+ F DE GK+Y
Sbjct: 434 --SMPYYCTTIRKITVTPSTMHFCSPNVESSNRVLRKYNSYQDRFLRVQFTDELYKGKVY 491
Query: 317 STVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRP 376
+ T I+ R+ L+ GI IG++ +E LAF NSQ RE ++ F
Sbjct: 492 NNA------------GTEIFNRIYRVLKQGIKIGNRVYEFLAFGNSQIRECAVYFFCPTA 539
Query: 377 ELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHV------------------DS 418
T DIR+ MG+F I+NV KYAAR+GQ F+++RE V
Sbjct: 540 YTTCDDIRQWMGEFSHIRNVAKYAARIGQCFSTTREIRGVTVPRIVQAEDIERGGYCFSD 599
Query: 419 NIGKISAELAETVAKKCGY-AIYTPSAFQIRYGGYK-------------VTLRNNMFKYK 464
+GKIS LAE V + G ++ PSAFQ R GG K V +R + K+K
Sbjct: 600 GVGKISKLLAEMVVNEMGQESVGIPSAFQFRMGGCKGMLAVWPDAKGLEVHIRPSQEKFK 659
Query: 465 SESTSLDILANSKY------------------QREGVARLRLDNV--FERKQREVVARLD 504
++ L+I+ ++Y + E + +L V +E+ R+ VA
Sbjct: 660 AQFNGLEIIRFAQYSVATLNRQTITILATLGVESEPILQLAKQQVQNYEKAMRDRVAAAG 719
Query: 505 AILTDSSKVQEALELMSSAENTNVLKELLNCGYKPD--AEPFLSMMPQTFHASNLLELRT 562
+ V E + ++ +K+L+ G+ EPF+ + + ++ L+
Sbjct: 720 LL---GRYVDENMTSLT-------IKDLVCWGFMDTEVQEPFVLTILNLWRIWSVKLLKE 769
Query: 563 RARIFIQNGQAMMGCLDEKGTL----------------------------EYGQ-----G 589
+AR+ ++ ++GCLDE GTL + G+ G
Sbjct: 770 KARVIVEQSAFLLGCLDETGTLRGHSKATEGRETRNIEDIPQIFLQIPNPDDGKFYCVTG 829
Query: 590 LMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVC 649
+ +V + P LHPGD+RV+ AVDVPAL H+ + V+FP+ G+R + SG D DG+ +FV
Sbjct: 830 VCIVGRNPSLHPGDIRVVEAVDVPALRHLKNVVVFPSIGDRDVPSMLSGGDLDGDDFFVI 889
Query: 650 WDHDRIPPLQFQPTA-YTPAPEKILARD-VTIEDVEEYFADYIVNDSLGIICNAHVVYAY 707
W+ IPP QP Y + +L R V + D+ +F Y+ ND L ++ AH+ A
Sbjct: 890 WNPALIPPQWHQPPMDYVASKAPVLKRGFVKVSDLRTFFVRYMQNDCLALVAVAHLAQAD 949
Query: 708 SEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIV 767
A +C L +L S D+ KT A P L+ K +P FM +++ Y+S +
Sbjct: 950 QSQAGARDGKCIKLAELHSKAVDYVKTADPADFPPYLQPKRWPHFMNRKNT--YKSLSPI 1007
Query: 768 GNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGN 827
G +Y + A K F +F TD + ++V Q YD +
Sbjct: 1008 GQIYDMIQDQALDPLYEKKFDNRILNRFTLTDDLLQKARKVKRQ---------YDTSMRR 1058
Query: 828 LMDYYGIKTEAEMLSRCIMEMAKSFDKKRDLEAISFSVRSLRKEAR 873
LM Y +KTE E + ++ + + E I +L++ R
Sbjct: 1059 LMSYRDVKTEFEAWTGFVLSRPRVGSDYKQQEDIGRESAALKQRFR 1104
>gi|336463319|gb|EGO51559.1| suppressor of ascus dominance [Neurospora tetrasperma FGSC 2508]
gi|350297473|gb|EGZ78450.1| suppressor of ascus dominance [Neurospora tetrasperma FGSC 2509]
Length = 1633
Score = 271 bits (693), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 193/617 (31%), Positives = 299/617 (48%), Gaps = 95/617 (15%)
Query: 234 YDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVR 293
+DP+ E ++ + + FPTS + +V ++ +TP+++YF P + +NRV+R
Sbjct: 510 FDPM----ELFKDNAALTYFPTS--FMIPNHCAWVRRVTITPTRIYFSTPCVEPTNRVIR 563
Query: 294 SYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKK 353
+ D F+R+ F DE VL +I S GE ++ RV L G+ +G
Sbjct: 564 QWRHAQDYFIRIQFTDE--------VLEGRIKS--GEAELPLFLRVYRVLEKGVAMGPWH 613
Query: 354 FETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSR-- 411
++ LAF NSQ RE +MF + LT +R MG F IK + KYAARLGQ F+++R
Sbjct: 614 WKFLAFGNSQIREAGAFMFCEQSNLTCDMMRAWMGRFSHIKVIAKYAARLGQCFSTTRLV 673
Query: 412 ----------------EALHVDSNIGKISAELAETVAKKCGYAI-YTPSAFQIRYGGYK- 453
+ IGKIS LA+ VA ++I PSA+Q R GG K
Sbjct: 674 PGIPAPRIITIPDVEKDGFCFTDGIGKISPLLAKIVAHD--WSIDPPPSAYQFRMGGCKG 731
Query: 454 ------------VTLRNNMFKYKSESTSLDILANSKY-----QREGVARLR----LDNVF 492
V +R + K+ +E L+++ S++ R+ +A L D VF
Sbjct: 732 VLVTWPDVKGMEVHIRKSQEKFVAEFNGLEVVRCSQFSTATLNRQIIAVLSSLGVPDQVF 791
Query: 493 ERKQREVVARLDAILTDSSKVQEALE-LMSSAENTNVLKELLNCGYKPDAEPFLSMMPQT 551
+ ++ +A + D K L+ + T ++ E+L G+ EPF+ + Q
Sbjct: 792 VDMMEQQLSDFNAAMEDKQKATAILKTFIDENHMTPIIAEMLAYGFMESQEPFVRTLLQL 851
Query: 552 FHASNLLELRTRARIFIQNGQAMMGCLDEKGTLE-------------------------- 585
+ + ++ L+ +AR+ ++ ++GC+DE GTL+
Sbjct: 852 WRSWSIKTLKEKARLNVEKSAFVLGCVDETGTLKGHMKVTEDWKDVPSEKLPQIFLQIPD 911
Query: 586 -------YGQGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSG 638
G VV + P LHPGD+RV+ AVDVPAL H+ D V+FP G+R + CSG
Sbjct: 912 DVNGGYRVITGTCVVGRNPSLHPGDIRVVEAVDVPALRHLRDVVVFPLAGDRDVPSMCSG 971
Query: 639 SDQDGEIYFVCWDHDRIPPLQFQPTAYT-PAPEKILARDVTIEDVEEYFADYIVNDSLGI 697
D DG+ +FV WD IP + P + P K LA + T+ ++ +F Y+ ++L +
Sbjct: 972 GDLDGDDFFVIWDPLLIPKERSHPPMTSEPIAGKELATEPTVNNLITFFVLYMKYNNLPL 1031
Query: 698 ICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQD 757
I +AH+ A +E + S +C +L L S+ D+ KTGVAA P RL K +P FMEK
Sbjct: 1032 IAHAHLATADAEVEGVKSPKCLELASLHSMAVDYVKTGVAAEFPRRLDPKTWPHFMEKNR 1091
Query: 758 KTWYESQHIVGNLYREV 774
T Y S +G LY V
Sbjct: 1092 HT-YHSVTALGKLYDMV 1107
>gi|116193483|ref|XP_001222554.1| hypothetical protein CHGG_06459 [Chaetomium globosum CBS 148.51]
gi|88182372|gb|EAQ89840.1| hypothetical protein CHGG_06459 [Chaetomium globosum CBS 148.51]
Length = 1572
Score = 270 bits (691), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 206/692 (29%), Positives = 326/692 (47%), Gaps = 109/692 (15%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
V K+ VTP++++F P + +NRVVR Y D D+F+R+ F DE +L +I ++
Sbjct: 490 VRKVTVTPTRIFFSTPTVETTNRVVRRYKDVQDHFIRVQFTDE--------LLDGRIRAS 541
Query: 328 NGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE---LTAADIR 384
+ +R +Y RV + GI +G ++ LAF NSQ REN + F PE T IR
Sbjct: 542 DVDRDDELYARVCRVMTQGIRMGKWHWKFLAFGNSQIRENGAFFFCE-PEDGTTTCHSIR 600
Query: 385 ERMGDFREIKNVTKYAARLGQSFASSR-----------EALHVDSN--------IGKISA 425
E MG+F I +V K AARLGQ F+++R + ++SN +GKIS
Sbjct: 601 EWMGNFDHISSVAKLAARLGQCFSTTRLLNCISAPRIVKIPDIESNDGFCFTDGVGKISF 660
Query: 426 ELAETVAKKCGYAIYT-PSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLD 471
LA V++ + I T PSAFQ R GG K V +R + K+ +E L+
Sbjct: 661 PLASLVSE--AWKIDTRPSAFQFRMGGCKGVLVTWPDAKGTEVHVRPSQEKFSAEYNGLE 718
Query: 472 ILANSKYQREGVARLRL---------DNVFERKQREVVARLDAILTDSSKVQEALELMSS 522
I+ S++ + R + D+VF +A D +T+ + A+EL+S
Sbjct: 719 IIRCSQFSCPTLNRQTILILSCLGVPDDVFIDMMAGQIASYDTAMTNQDR---AIELLSK 775
Query: 523 AENTN-----VLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGC 577
+ N + +LN G+ EPF+ + Q + + ++ L+ +AR+ + G ++GC
Sbjct: 776 YVDGNMTTTTIATMILN-GFMHTREPFVRTLLQLWRSWSIKGLKEKARLVVDQGAFLLGC 834
Query: 578 LDEKGTL----------------------------------EYGQGLMVVAKKPCLHPGD 603
+DE GTL + G+ +V + P LHPGD
Sbjct: 835 VDETGTLRGHSRATEGRNGITQNDLPQIFLQVPDRKDRGAYKVVTGICIVGRNPSLHPGD 894
Query: 604 MRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPT 663
+RV+ AVDVP L H+ D V+FP KG+R + CSG D DG+ +FV WD IPP P
Sbjct: 895 IRVVEAVDVPELRHLRDVVVFPLKGDRDVPSMCSGGDLDGDDFFVIWDPKLIPPEWSHPP 954
Query: 664 AYTPAPEKI-LARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLV 722
APE + +++ + + +F ++ ND L +I +AH+ A E A +C L
Sbjct: 955 MNYTAPEPLNESQESIVNSLAFFFVLFMKNDRLPLIAHAHLATADYEVTGAKHWKCLQLA 1014
Query: 723 KLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTT 782
L SI D+ KTG+ A +L + YP FMEK Y S ++G LY ++
Sbjct: 1015 SLHSIAVDYVKTGIPARWNKKLDPRKYPHFMEKAKAKSYRSTSVLGKLYDMIDK------ 1068
Query: 783 TIKSFAKEGAMQFYDTDMEVNGFK-EVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEML 841
+ F + D + F+ + + K +T+YD + +M I+TE E+
Sbjct: 1069 --EVFDNRDNYKLPFDDRILKRFELGHPLLKEARKIKTQYDISMRRIMGQLEIRTEFEIW 1126
Query: 842 SRCIMEMAKSFDKKRDLEAISFSVRSLRKEAR 873
+ +M + + E + L+K+ R
Sbjct: 1127 AAFVMSKPRVGTDYKVQEKVGRESAGLKKQFR 1158
>gi|18656898|gb|AAL78034.1|AF468822_2 putative RNA-dependent RNA polymerase RDP-1 [Diaporthe perjuncta]
Length = 1484
Score = 270 bits (691), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 184/596 (30%), Positives = 273/596 (45%), Gaps = 100/596 (16%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDE-DLGKLYSTVLSPQISS 326
V + ++TP+ +YF P + L+NR++R Y D D FLR+ F DE GK++S S
Sbjct: 552 VRRAVITPTTIYFKTPCVELTNRILRKYSDLNDRFLRVQFTDEVTFGKIFS--------S 603
Query: 327 TNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRER 386
+ + +Y RV ++NG++IGD+ ++ LAFSNSQ REN + F +T A IR
Sbjct: 604 QDSNKDDNLYTRVHRVMQNGVIIGDRHYKFLAFSNSQFRENGAFFFCETDHVTCASIRNW 663
Query: 387 MGDFREIKNVTKYAARLGQSFASSREA----------------------LHVDSNIGKIS 424
MGDFR I++V K+AAR+GQ F ++R+ + +GKIS
Sbjct: 664 MGDFRHIRSVGKFAARMGQCFTTTRQVNGISIPKIRQIGDIQRRSGDNIWNFTDGVGKIS 723
Query: 425 AELAETVAKKCGYAIYTPSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLD 471
A +A + TPS FQ+R GG K V +R + K+K+ L+
Sbjct: 724 VFFARMIASERDLP-ETPSCFQMRMGGCKGVVVVWPDIPANEVHIRPSQEKFKAVYNGLE 782
Query: 472 ILANSKYQREGVARLRL---------DNVFERKQREVVARLDAILTDSSKVQEALELMSS 522
I+ S + + + + D VF R + + D L DS K E L
Sbjct: 783 IIKTSTFAHATLNKQVIPVLIALGVDDAVFVRMLDDELKEYDEALADSMKAGELLRSQVD 842
Query: 523 AENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKG 582
T + + + EPFL + + + L L+ + I ++N + G +DE G
Sbjct: 843 ENQTTLTMAEMVDTFMDSEEPFLWTLLRLWKCWVLKRLKQKFAISVKNSAMIFGVVDETG 902
Query: 583 TL--------------------------------------EYGQGLMVVAKKPCLHPGDM 604
L E G+ VV + P LHPGD+
Sbjct: 903 VLRGHSQDTEGKGFNNIESLPQIFLQVPIEGSDGKSTTNYEVITGICVVGRNPALHPGDV 962
Query: 605 RVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRI------PPL 658
RV+ AVDVP L H+ + V+FP G+R + CSG D DG+ YFV WD I PPL
Sbjct: 963 RVVEAVDVPELRHLKNVVVFPKTGDRDVPSMCSGGDMDGDDYFVYWDERLIPSEWDHPPL 1022
Query: 659 QFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRC 718
+ TP + DVT DV +FA Y+ NDSLG I AH A +C
Sbjct: 1023 DHDADSSTPGLDS--PADVTNGDVTRFFAQYMKNDSLGRIATAHFAQADQLAGGVKHPKC 1080
Query: 719 PDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREV 774
+L KL S D+ K+G A + L+ + +P +ME+ K+ Y S+ +G +Y +
Sbjct: 1081 IELAKLHSKAVDYIKSGKPAVMKRHLQPRNWPHWMERDKKSSYHSRGALGQIYDRI 1136
>gi|46128677|ref|XP_388892.1| hypothetical protein FG08716.1 [Gibberella zeae PH-1]
Length = 1295
Score = 270 bits (689), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 198/661 (29%), Positives = 312/661 (47%), Gaps = 112/661 (16%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDE-DLGKLYSTVLSPQISS 326
V + ++TP+ V + P I +SNRV+R + D FLR+ F +E + GK+ +
Sbjct: 486 VRRAVITPTTVRYSTPNIEVSNRVMRRFRHIQDRFLRIQFTEEMEKGKI----------T 535
Query: 327 TNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRER 386
N ++ IY+R+L T+ GI IGD+ +E LAF NSQ R N + F ++ DIR+
Sbjct: 536 VNKDQNDEIYKRILRTMYEGIRIGDRLYEFLAFGNSQLRSNGAYFFCPTEYVSCDDIRQW 595
Query: 387 MGDFREIKNVTKYAARLGQSFASSREALHVDS------------------NIGKISAELA 428
MG F IK V KYAARLGQ F+++R+ + S +GKIS LA
Sbjct: 596 MGQFSHIKVVAKYAARLGQCFSTTRDVRGISSPNCLQIPDVERNGYCFTDGVGKISVFLA 655
Query: 429 ETVAKKCGYAIYT-PSAFQIRYGGYK--------------VTLRNNMFKYKSESTSLDIL 473
+ V + I PSAFQ R GG K V +R + K++S+S L+I+
Sbjct: 656 KLVGEDMAIDICADPSAFQFRMGGCKGVLAVWPEDAKGTEVHVRESQKKFESDSKGLEII 715
Query: 474 ANSKYQREGVARLRLDNV------------FERKQREVVARLDAILTDSSKVQEALE-LM 520
++ R A L L + F + + + + + D+ E LE
Sbjct: 716 ---RWARYATATLNLQTILILECLGVPIKSFTTLLDQQLKQYELAMRDNDVAIEMLERFR 772
Query: 521 SSAENTNVLKELLNCGYKPDA--EPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCL 578
N + L +LL +K + EPF+ + + + ++ L+ +ARI + ++GC+
Sbjct: 773 DEQHNHSCLADLLRADFKTETFQEPFVVNVINLWQSWSIKSLKEKARIHVPKSAFVLGCV 832
Query: 579 DEKGTL-----------------------------EYGQ-----GLMVVAKKPCLHPGDM 604
DE GTL +Y + G VV + P LHPGD+
Sbjct: 833 DETGTLRGHSFDTEGSKEKDVHRLPQIFLQISDPKKYNKTSIIRGPCVVGRNPSLHPGDI 892
Query: 605 RVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPP-LQFQPT 663
RV+ AVD ALHH+ D V+FP+ G+RP N SG D DG+ +FV WD +P P
Sbjct: 893 RVVEAVDCKALHHLTDVVVFPSTGDRPVPNMLSGGDLDGDDFFVIWDPSLMPSEWNHPPM 952
Query: 664 AYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVK 723
Y+P L RDV ++D+ +F Y+ ND L +I +H A+++ S++C +L +
Sbjct: 953 NYSPLDPIELKRDVNVDDLRNFFVKYLKNDKLPLIAMSH--RAFADELGPKSSKCLELAE 1010
Query: 724 LSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREV--NGIAPST 781
L S D+ KTG A + + + +P +MEK+ Y S+ +G +Y +V + +
Sbjct: 1011 LHSKAVDYPKTGNPAVLRQDQQPRKWPHWMEKRHS--YHSRKALGVIYDKVAHKKVEFNP 1068
Query: 782 TTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEML 841
+ F K +F + D E G K + EYD + ++ +KTE E+
Sbjct: 1069 VWDRPFDKRITKRF-ELDNETLGVAR--------KIKAEYDTAVRRILSQNSLKTEFELF 1119
Query: 842 S 842
+
Sbjct: 1120 T 1120
>gi|15422180|gb|AAK95829.1| putative RNA-dependent RNA polymerase [Diaporthe ambigua]
Length = 1483
Score = 269 bits (688), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 190/597 (31%), Positives = 281/597 (47%), Gaps = 102/597 (17%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDE-DLGKLYSTVLSPQISS 326
V + ++TP+ +YF P + L+NR++R Y D D FLR+ F DE GK++S S
Sbjct: 553 VRRAVITPTAIYFKSPCVELTNRILRKYSDLNDRFLRVQFTDEITSGKIFS--------S 604
Query: 327 TNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRER 386
+ + ++ RV +RNGIVIGD+ + LAFSNSQ REN + F + +T IRE
Sbjct: 605 QDSTKDDNLFTRVHRVMRNGIVIGDRHYRFLAFSNSQFRENGAFFFCNTDHVTCESIREW 664
Query: 387 MGDFREIKNVTKYAARLGQSFASSREA----------------------LHVDSNIGKIS 424
MGDFR I++V K+AAR+GQ F ++R+ + +GKIS
Sbjct: 665 MGDFRHIRSVGKFAARMGQCFTTTRQVNGISIPKIRQIGDIQQQTGDHIWNFTDGVGKIS 724
Query: 425 AELAETVAKKCGYAIYTPSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLD 471
LA +A + TPS FQIR GG K V +R + K+K+ L+
Sbjct: 725 PFLATLIANERNLP-ETPSCFQIRMGGCKGVVVTWPDVPPSEVHVRPSQEKFKAVYNGLE 783
Query: 472 ILANSKYQREGVAR--------LRLD-NVFERKQREVVARLDAILTDSSKVQEALE-LMS 521
I+ S + + + L +D +VF + + L DS + E L +
Sbjct: 784 IIKTSAFSHATLNKQVIPVLVALGVDKSVFVSMLDSELTEYEEALADSMRAGELLRSQVD 843
Query: 522 SAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEK 581
+ T L E+++ + EPFL + + + L L+ + I ++N + G +DE
Sbjct: 844 ENQTTLTLAEMVDT-FMDSEEPFLWTLLRLWKCWVLKRLKQKFAISVKNSAMVFGVVDEI 902
Query: 582 GTL--------------------------------------EYGQGLMVVAKKPCLHPGD 603
G L E GL VV + P LHPGD
Sbjct: 903 GVLRGHSQATEGRRDNNIESLPQIFLQVPVEGSDGKSTTNYEVITGLCVVGRNPSLHPGD 962
Query: 604 MRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRI------PP 657
+RV+ AVD L H+ + V+FP G+R + CSG D DG+ YFV WD I PP
Sbjct: 963 VRVVEAVDALELRHLKNVVVFPRTGDRDIPSMCSGGDMDGDDYFVYWDERLIPLEWYHPP 1022
Query: 658 LQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNR 717
L + TP +K DVTIEDV +FA Y+ NDSLG I AH A + +
Sbjct: 1023 LDHDAESSTPGLDK--PEDVTIEDVTRFFAQYMKNDSLGRIATAHFAQADQLSGGVKNPK 1080
Query: 718 CPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREV 774
C +L KL S D+ K+G A + L+ + +P +ME++ K+ Y S +G +Y +
Sbjct: 1081 CIELAKLHSKAVDYIKSGKPAVMQRHLQPRKWPHWMEREKKSSYPSVSALGQIYNRI 1137
>gi|408392756|gb|EKJ72076.1| hypothetical protein FPSE_07701 [Fusarium pseudograminearum CS3096]
Length = 1206
Score = 269 bits (687), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 201/661 (30%), Positives = 312/661 (47%), Gaps = 112/661 (16%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDE-DLGKLYSTVLSPQISS 326
V + ++TP+ V + P I +SNRV+R + D FLR+ F +E + GK+ +
Sbjct: 397 VRRAVITPTTVRYSTPNIEVSNRVMRRFRHIQDRFLRIQFTEEMEKGKI----------T 446
Query: 327 TNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRER 386
N ++ IY+R+L T+ GI IGD+ +E LAF NSQ R N + F ++ DIR+
Sbjct: 447 VNKDQNDEIYKRILRTMYEGIRIGDRLYEFLAFGNSQLRSNGAYFFCPTEYVSCDDIRQW 506
Query: 387 MGDFREIKNVTKYAARLGQSFASSREALHVDS------------------NIGKISAELA 428
MG F IK V KYAARLGQ F+++R+ + S +GKIS LA
Sbjct: 507 MGQFSHIKVVAKYAARLGQCFSTTRDVRGISSPNCLQIPDVERNGYCFTDGVGKISVFLA 566
Query: 429 ETVAKKCGYAIYT-PSAFQIRYGGYK--------------VTLRNNMFKYKSESTSLDIL 473
+ V + I PSAFQ R GG K V +R + K++S+S L+I+
Sbjct: 567 KLVGEDMAIDICADPSAFQFRMGGCKGVLAVWPEDAKGTEVHVRESQKKFESDSKGLEII 626
Query: 474 ANSKYQREGVARLRLDNVFERKQREVVARLDAILTDSSKVQE---------ALELM---- 520
++ R A L L + + V R L D Q A+E++
Sbjct: 627 ---RWARYATATLNLQTILILECLGVPIRSFTTLLDQQLRQYELAMRDNDVAIEMLERFR 683
Query: 521 SSAENTNVLKELLNCGYKPDA--EPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCL 578
N + L +LL +K + EPF+ + + + ++ L+ +ARI + ++GC+
Sbjct: 684 DEQHNHSCLADLLRADFKTETFQEPFVVNVINLWQSWSIKSLKEKARIHVPKSAFVLGCV 743
Query: 579 DEKGTL-----------------------------EYGQ-----GLMVVAKKPCLHPGDM 604
DE GTL +Y + G VV + P LHPGD+
Sbjct: 744 DETGTLRGHSFDTEGSKEKDVHRLPQIFLQISDPKKYNKTSIIRGPCVVGRNPSLHPGDI 803
Query: 605 RVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPP-LQFQPT 663
RV+ AVD ALHH+ D V+FP+ G+RP N SG D DG+ +FV WD +P P
Sbjct: 804 RVVEAVDCKALHHLTDVVVFPSTGDRPVPNMLSGGDLDGDDFFVIWDPSLMPSEWNHPPM 863
Query: 664 AYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVK 723
Y+P L RDV ++D+ +F Y+ ND L +I +H A+++ S++C +L +
Sbjct: 864 NYSPLDPIELKRDVNVDDLRNFFVKYLKNDKLPLIAMSH--RAFADELGPKSSKCLELAE 921
Query: 724 LSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREV--NGIAPST 781
L S D+ KTG A + + + +P +MEK + Y S+ +G +Y +V + +
Sbjct: 922 LHSKAVDYPKTGNPAVLRQDQQPRKWPHWMEK--RYSYHSRKALGVIYDKVAHKKVEFNP 979
Query: 782 TTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEML 841
SF K +F + D E G K + EYD + ++ +KTE E+
Sbjct: 980 VWDSSFDKRITKRF-ELDNETLGVAR--------KIKAEYDTAVRRVLSQNALKTEFELF 1030
Query: 842 S 842
+
Sbjct: 1031 T 1031
>gi|260801475|ref|XP_002595621.1| hypothetical protein BRAFLDRAFT_64731 [Branchiostoma floridae]
gi|229280868|gb|EEN51633.1| hypothetical protein BRAFLDRAFT_64731 [Branchiostoma floridae]
Length = 1492
Score = 269 bits (687), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 196/581 (33%), Positives = 276/581 (47%), Gaps = 104/581 (17%)
Query: 392 EIKNVTKYAARLGQSFASSREALHV------------------------DSNIGKISAEL 427
+++ Y AR+GQ F+++ ++ V IGKIS +L
Sbjct: 587 QVRCPATYLARMGQCFSTTESSVTVRPGQVSRIADIEGGRDPDGKSYCFSDGIGKISRDL 646
Query: 428 AETVAKKCGYAIYTPSAFQIRYGGYKVTL-------------RNNMFKYKSESTSLDILA 474
A+ V +K + + PSAFQ+RY G K L R +M K+ SE +++I +
Sbjct: 647 AKEVCEKTQRS-HEPSAFQVRYAGVKGMLAVDPTLTGLAMQYRKSMEKFSSEHNNIEICS 705
Query: 475 NSKYQREGVARLRL---------DNVFERKQREVVARLDAILTDSSKVQEALELMSSAEN 525
S R + R + D VF+ Q + + +L ++ ++ +AL +
Sbjct: 706 ESHPARFYLNRQIISILSGLGIPDEVFQVLQEDQLRKLASMFLLENRAVDALNQRAQLSG 765
Query: 526 TNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFI--QNGQAMMGCLDEKGT 583
K L NCG EPF M + + S + + R +ARI I + G+ M+G LDE GT
Sbjct: 766 VPYQK-LSNCGVYMTREPFFKGMLRRVYKSGIGDTRRKARIEIPPEYGRNMLGVLDETGT 824
Query: 584 LEYGQ--------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVL 623
LEYGQ G +VV++ PC HPGD+R LRAVDVPALHHMVD ++
Sbjct: 825 LEYGQVFVQYTEDITDKGGETKVLTGDVVVSRNPCFHPGDVRKLRAVDVPALHHMVDVIV 884
Query: 624 FPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTP----APEKILARDVTI 679
FP+KG RPH NE SG D DG+ +FV W P L FQ P AP+KI VTI
Sbjct: 885 FPSKGPRPHPNEMSGGDLDGDQFFVTWH----PDLLFQRPNADPMHFKAPKKIELEIVTI 940
Query: 680 EDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAAT 739
D++ + DYI +D LG+I NAH+ ++ E D S C +L + S DF KTGV
Sbjct: 941 SDLQNFIVDYIKSDILGVIANAHLAFSDKEEDGVFSQVCLNLAEKHSDAVDFPKTGVPVG 1000
Query: 740 IPSRLRVKIYPDFMEK-QDKTWYESQHIVGNLYREVNGI-----APSTTTIKSFAKEGAM 793
+ R K YPDFM+K KT S+ +G +YRE I AP T +
Sbjct: 1001 LSDDERPKAYPDFMDKSHKKTVRRSEKAMGEMYRECQAIENICSAPEKTDEAETIEPDPY 1060
Query: 794 QFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFD 853
T +K A Q R Y+++L LMD YGI+TEAE +S CI + K D
Sbjct: 1061 LILPTHQR---YKRQAEQ-----SRGRYNDQLKYLMDRYGIETEAEAMSGCIGRIHKHMD 1112
Query: 854 KKRDLEAISF----SVRSLRKEARAWF--------NKKKND 882
+ D + ++ LR+ R F N KK+D
Sbjct: 1113 NRYDRHEVERVFKERIKDLRRRTREEFFVEFGGEKNVKKSD 1153
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 117/227 (51%), Gaps = 36/227 (15%)
Query: 246 KHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRL 305
+ V G+ T PA L V +++VTP+++ F PEI NRV+R + D+FLR+
Sbjct: 375 RDVELGRPETLPAT-----LQVVARVIVTPTRLVFLQPEIMYGNRVLREF--GTDHFLRV 427
Query: 306 SFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQER 365
F DED KL +T NG+ +I+ RV L+ GI +G++ +E LA SNSQ R
Sbjct: 428 VFRDEDFSKLQAT----GTGRGNGDEEEKIFVRVRKVLKKGIKVGNRLYEFLAASNSQLR 483
Query: 366 ENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHV--------- 416
E+ LW FAS A IR+ MGDF + Y AR+GQ F+++ ++ V
Sbjct: 484 EHGLWFFASDGRNRADSIRDWMGDFSNSRCPATYLARMGQCFSTTESSVTVRPGQVSRIA 543
Query: 417 ---------------DSNIGKISAELAETVAKKCGYAIYTPSAFQIR 448
IGKIS +LA+ V +K + + PSAFQ+R
Sbjct: 544 DIEGGRDPDGKSYCFSDGIGKISRDLAKEVCEKTQRS-HEPSAFQVR 589
>gi|156361828|ref|XP_001625486.1| predicted protein [Nematostella vectensis]
gi|156212322|gb|EDO33386.1| predicted protein [Nematostella vectensis]
Length = 531
Score = 268 bits (686), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 182/541 (33%), Positives = 267/541 (49%), Gaps = 98/541 (18%)
Query: 383 IRERMGDFREIKNVTKYAARLGQSFASSREALHVD------------------------- 417
IR ++GD EI+ V + +R+GQ F+S+++++ V
Sbjct: 1 IRSKLGDLEEIRCVAVFVSRMGQCFSSTKKSVEVSLDNGVRIEKIPDVEKEYNNVLFPCC 60
Query: 418 -----------SNIGKISAELAETVAKKCGYAIYT--PSAFQIRYGGYKVTL-------- 456
IGKIS +LA VAK G PSA+QIRY G K L
Sbjct: 61 GNVRSGVYIFSDGIGKISKDLANKVAKSLGLEAVEMFPSAYQIRYAGCKGMLAVDPSLRG 120
Query: 457 -----RNNMFKYKSESTSLDILANSK-----YQREGVARLR----LDNVFERKQREVVAR 502
R++M K++S +L+I S+ + R+ + L D+ F R Q +++
Sbjct: 121 EVLQYRDSMKKFQSSHKALEICEPSRPSELYFNRQCITLLSGLGVPDDEFIRLQDKMLMD 180
Query: 503 LDAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRT 562
L ++L + E+L +S A V + + G EPF M + S L +L
Sbjct: 181 LASMLLYETSALESLGRISIAGGLKV-SLIRHSGIVVTCEPFFRSMLLAIYRSRLGDLLR 239
Query: 563 RARIFI--QNGQAMMGCLDEKGTLEYGQ--------------------GLMVVAKKPCLH 600
RARI I +G+ +MG LDE G+L+YG+ G +VV+K PC H
Sbjct: 240 RARIAIPESHGRLLMGVLDETGSLDYGEVFIRYTTELGNPGQGYTILTGDVVVSKNPCFH 299
Query: 601 PGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW------DHDR 654
PGDMR AVD+PAL+H+VDC++FPAKG RPHT+E SGSD DG+ YF W D D
Sbjct: 300 PGDMRKFNAVDIPALYHLVDCIVFPAKGPRPHTDEMSGSDLDGDKYFATWLRGIIPDRDN 359
Query: 655 IPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAM 714
PP+ F P +K+L R + + D+ ++ ADYI ND LG+I NAH+V+A SE D
Sbjct: 360 EPPMDFYPPK-----KKMLNRPIEVSDMIQFVADYIKNDQLGVIANAHLVHADSEQDGIF 414
Query: 715 SNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREV 774
S++C L + S DF KTG + LR + YPDFM K DK Y S +++G L+++
Sbjct: 415 SDKCIKLAHMHSDAVDFPKTGECPELTKELRPEQYPDFMMKPDKPRYVSHNVLGKLFQKC 474
Query: 775 NGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGI 834
N + + + + + D DM + G + D + R Y+ KL LM YG+
Sbjct: 475 NSLERARRFMTGDSTKDIT--VDQDMILEGHQSYLE--DAIEQRDRYNAKLEALMARYGL 530
Query: 835 K 835
+
Sbjct: 531 E 531
>gi|429860171|gb|ELA34917.1| suppressor of ascus dominance [Colletotrichum gloeosporioides Nara
gc5]
Length = 1353
Score = 268 bits (685), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 199/660 (30%), Positives = 302/660 (45%), Gaps = 110/660 (16%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDE-DLGKLYSTVLSPQISS 326
+ K++VTP+ VY+ P + SNRV+R + + D FLR+ F DE GK+YS
Sbjct: 522 IRKVVVTPTTVYYSSPGVESSNRVLRKFSEYQDRFLRVQFTDELYYGKIYSD-------- 573
Query: 327 TNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRER 386
+GE ++ RV TL GI IG + +E LAF NSQ RE ++ F + IR+
Sbjct: 574 -SGEE---LFSRVYRTLAKGITIGSRHYEFLAFGNSQIRECAVYFFCPTDHRSCDCIRDW 629
Query: 387 MGDFREIKNVTKYAARLGQSFASSRE------------------ALHVDSNIGKISAELA 428
MGDF IKNV KYAAR+GQ F+++RE +GKIS LA
Sbjct: 630 MGDFGHIKNVAKYAARIGQCFSTTREIPGTTVANIVPIEDVERNGFCFSDGVGKISQLLA 689
Query: 429 ETVAKKCG---YAIYTPSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLDI 472
V + I PSAFQ R GG K V +R + K+K+ L+I
Sbjct: 690 HIVVVEMSSDDACISVPSAFQFRMGGCKGMLAVWPDAKRQEVHIRPSQEKFKATFNGLEI 749
Query: 473 LANSKYQREGVARL-------------RLDNVFERKQREVVARLDAILTDSSKVQEALEL 519
+ KY + +A L R + + + +R++ A+ + +
Sbjct: 750 I---KYAQHSIATLNRQTITVLTSLGVRAETILKLAERQIKNYQKAMNDRVAAASLLGQY 806
Query: 520 MSSAENTNVLKELLNCGY-KPD-AEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGC 577
+ + +K+L+ G+ P+ EPF+ + + ++ L+ +AR+ ++ ++GC
Sbjct: 807 IDENLTSLTIKDLVGWGFMDPEIQEPFVLTILDLWRIWSMKLLKEKARVIVEESAFLLGC 866
Query: 578 LDEKGTLE-YG---------------------------------QGLMVVAKKPCLHPGD 603
LDE G+L Y GL +V + P LHPGD
Sbjct: 867 LDETGSLRGYSTATEGKKTNNIEDLPQVFLQVESPSGSGKFTCVTGLCIVGRNPSLHPGD 926
Query: 604 MRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPT 663
+RV+ AVDVP LHH+ + V+FP G+R + SG D DG+ +FV W+ D IP QP
Sbjct: 927 LRVVEAVDVPQLHHLRNVVVFPRNGDRDVPSMMSGGDLDGDDFFVMWNQDLIPKDWHQPP 986
Query: 664 A-YTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLV 722
YT +L RDV ++D+ +F Y+ NDSL +I AH+ +A +C L
Sbjct: 987 MNYTQPTPAVLRRDVQVKDLRTFFVRYMQNDSLALIATAHLAHADKSLLGVKDQKCLQLA 1046
Query: 723 KLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTT 782
L S D+ KTG A +P L K P F+ + +T Y S +G LY + + +
Sbjct: 1047 ALHSKAVDYVKTGDPAKLPPALNPKERPHFLGSRGQT-YHSSTALGKLYDMIQDVGFNPL 1105
Query: 783 TIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLS 842
K F +F T+ ++ + V +Q YD + LM I TE E+ +
Sbjct: 1106 YEKRFDNRVLNRFNLTEDLLSKARAVKVQ---------YDMAMRRLMGQRDIDTEFEIWT 1156
>gi|255944161|ref|XP_002562848.1| Pc20g02950 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587583|emb|CAP85624.1| Pc20g02950 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1368
Score = 268 bits (685), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 210/761 (27%), Positives = 343/761 (45%), Gaps = 117/761 (15%)
Query: 198 LVQFTLLPGFVFSCNSDLNQDGKHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSP 257
L +FT+ F+ + + LE + ++ P+ ++ K V+ + P
Sbjct: 404 LSEFTMTREFIETLKGLGDDQATRLLEFVATEKKQYLAPMEIFDLKFFKGVTDSRIPNY- 462
Query: 258 AVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDE--IDNFLRLSFVDEDLGKL 315
++ +TP+ +Y+ P + +SNRVVR + + FLR+ F DE
Sbjct: 463 -------CCFMRTARITPTTIYYNTPTVDISNRVVREWSTKGTPGRFLRVRFTDEKT--- 512
Query: 316 YSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASR 375
+I+++ +Y RV TL NGI IGD+ +E LAF NSQ RE+ + A
Sbjct: 513 -----EGRINASQRGCNDEVYTRVKRTLANGIAIGDRHYEFLAFGNSQFREHGAYFVAPD 567
Query: 376 PELTAADIRERMGDFREIKNVTKYAARLGQSFASS-----------------REALHVDS 418
++A IR MG F I+NV KY ARLGQ F+++ R
Sbjct: 568 AGISAGTIRAWMGQFNHIRNVAKYTARLGQCFSTTRAFTGSSVQTIPCDDIIRNGFTFSD 627
Query: 419 NIGKISAELAETVAKKCGYAIYT---PSAFQIRYGGYK-------------VTLRNNMFK 462
+GKIS LA+ V + T PSAFQ R GG K V +R + K
Sbjct: 628 GVGKISKFLAQMVTSQHDIKTLTGEPPSAFQFRLGGAKGMLVVSTDPLPQEVHIRPSQQK 687
Query: 463 YKSESTSLDILANSKYQREGVARLRL---------DNVFERKQREVVARLD-AILTDSSK 512
+++ L+I+ S+Y + R + D VF K ++ A+L DS
Sbjct: 688 FETSQAGLEIIRWSQYSLATLNRQIILVLSALGIPDEVFHSKLNTMLGSFHRAMLNDSKA 747
Query: 513 VQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQ 572
+ + + + T L ++++ G++ + EPF++ M + + + +L L+ +A+I I G
Sbjct: 748 INLLQKYIDPNQMTLTLAQMVSDGFRRNEEPFVNTMLELWKSWHLKHLKEKAKIAIDQGA 807
Query: 573 AMMGCLDEKGTL--------------------------------------EYGQGLMVVA 594
++G +DE G L E +GL ++A
Sbjct: 808 NVLGVMDETGVLKGYFRKELPSRRASYAEKLAALPEIFVQVCRLDGGGEYEVIEGLCILA 867
Query: 595 KKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDR 654
+ P LHPGD+RV+RAV+ LH + D V+ P G++ + CSG D DG+ Y V WD +
Sbjct: 868 RNPSLHPGDIRVVRAVNRSELHALRDVVVLPQTGDQDIASMCSGGDLDGDDYLVIWDPNL 927
Query: 655 IPPLQF-QPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKA 713
IP F + Y + L DVT++++ +F Y+ ND L I +AH+ +A P
Sbjct: 928 IPANWFVECMDYKGSKAPDLDHDVTVDEITSFFVTYMKNDCLPRIAHAHLAWADRLPRGV 987
Query: 714 MSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDK---TWYESQHIVGNL 770
++C L +L S D++K+G A + L K +P FMEK+ K + Y+S I+G L
Sbjct: 988 WEDKCIRLAQLHSDAVDYNKSGAHARMARSLDPKFWPHFMEKRFKRPSSIYKSTKILGQL 1047
Query: 771 YREVNGIAPSTTTIKSFAKEGAMQFYDTDME--VNGFKEVAMQFDGFKYRTEYDNKLGNL 828
Y V I P F + F +E + E M++ + + E+D + +
Sbjct: 1048 YDAV--ITP------DFVPKLEKPFDSRILESPLAPASEAYMEY-ARELKAEFDMNMRQI 1098
Query: 829 MDYYGIKTEAEMLSRCIME---MAKSFDKKRDLEAISFSVR 866
M Y I TE E+ S ++ + K + + DL I ++R
Sbjct: 1099 MAQYEINTEFEVWSTFVLRHGFVIKDYKMQEDLGRIVGTLR 1139
>gi|238015130|gb|ACR38600.1| unknown [Zea mays]
Length = 525
Score = 268 bits (685), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 168/474 (35%), Positives = 242/474 (51%), Gaps = 54/474 (11%)
Query: 460 MFKYKSESTSLDILANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDS 510
M K++S+ST L+I SK Q RE ++ L D VFE Q++ + D +LT+
Sbjct: 1 MKKFESKSTMLNITNWSKSQPCYVNREIISLLSTLGIKDEVFESMQQDDMHESDGMLTNK 60
Query: 511 SKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQN 570
L + +T ++L GY+P +EP+L M+ + A+ L ++RTR +I +Q
Sbjct: 61 EAALSVLGKIGGG-DTKTAADMLLQGYEPSSEPYLLMILKAHRANRLTDIRTRCKIHVQK 119
Query: 571 GQAMMGCLDEKGTLEYGQ-------------------------------GLMVVAKKPCL 599
G+ ++GCLDE LEYGQ G + + K PCL
Sbjct: 120 GRVLIGCLDETCKLEYGQVYIRITKNHKEQKYSEQPFFCNDDGKTAVIVGKVAITKNPCL 179
Query: 600 HPGDMRVLRAVDVPAL--HHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPP 657
HPGD+RVL AV P L ++DCV+FP +GERPH NECSG D DG+++F+ WD IP
Sbjct: 180 HPGDVRVLEAVYDPGLDARGLIDCVVFPQRGERPHPNECSGGDLDGDLFFITWDDKLIPE 239
Query: 658 LQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNR 717
P YT +I+ VT+E+++++F Y++ND+LG I AH+++A +P KA S
Sbjct: 240 KVDAPMDYTATRPRIMDHAVTLEEIQKHFVSYMINDTLGAISTAHLIHADRDPLKARSPE 299
Query: 718 CPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGI 777
C L L S+ DF+KTG A +P LR + +PDFME+ ++ Y S ++G LYR
Sbjct: 300 CVQLAALHSMAVDFAKTGAPAEMPLALRPREFPDFMERWERPMYVSNGVLGKLYRAALRH 359
Query: 778 APSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTE-YDNKLGNLMDYYGIKT 836
+ + YD D+EV GF E D + R E Y +LG LM YY +
Sbjct: 360 EEDAEALLPAGPPSCV--YDPDLEVAGFDEF---LDAAEERYEAYAERLGALMTYYSAER 414
Query: 837 EAEMLSRCIMEMAKSF--DKKRDLEA---ISFSVRSLRKEARAWFNKKKNDSDS 885
E E+L+ I D KR E I +V +L E R W K D S
Sbjct: 415 EDEILTGNIRNKLVYLRRDNKRYFEMKDRIIAAVDALHAEVRGWLRACKEDDAS 468
>gi|171685025|ref|XP_001907454.1| hypothetical protein [Podospora anserina S mat+]
gi|170942473|emb|CAP68125.1| unnamed protein product [Podospora anserina S mat+]
Length = 1493
Score = 267 bits (683), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 218/765 (28%), Positives = 356/765 (46%), Gaps = 135/765 (17%)
Query: 207 FVFSCNS---DLNQDGKHA---LEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVA 260
F SC+S QD + A LE + +DPVS L + + +PT+ +
Sbjct: 468 FWRSCSSLQIPKGQDPQRARLVLEYAADMGRKIWDPVSLLTDVG----ALTYYPTT--LR 521
Query: 261 LDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVL 320
L V K++VTP+K+ F P + +NRV+R Y + F+R+ F DE L
Sbjct: 522 LPHYCALVRKVMVTPTKIIFSTPTVETTNRVIRHYWTFQNYFMRIQFTDEQ--------L 573
Query: 321 SPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTA 380
++ ++ +R +Y RV L GI +G ++ LAF NSQ REN +MF +P+ A
Sbjct: 574 EGRVRGSDADRDDDLYTRVYRVLFWGIRMGKWHWKFLAFGNSQVRENGAFMFC-QPDSHA 632
Query: 381 A-------DIRERMGDFREIKNVTKYAARLGQSFASSR-------------------EAL 414
DIR MG+F IK V KYAARLGQ F+++R +
Sbjct: 633 GDMVPSCDDIRRWMGNFEHIKVVAKYAARLGQCFSTTRVLRGGTFPPIVEIEDINTADGK 692
Query: 415 HVDSN-IGKISAELAETVAKKCGYAIY-TPSAFQIRYGGYK-------------VTLRNN 459
H ++ +G+IS L+ VA+ + +Y PSA+Q R GG K V +R +
Sbjct: 693 HCFTDGVGRISPLLSRLVAED--WQVYPPPSAYQFRMGGCKGVLVGWKHAKGTEVHIRPS 750
Query: 460 MFKYKSESTSLDILANSKYQREGVARLRL---------DNVFERKQREVVARLDAILTDS 510
K+ + L+++ S + + R + D+VF RE ++R D +TD
Sbjct: 751 QEKFSAAYNGLEVVRCSSFSCATLNRQTITILSSLGVPDHVFVDLMREQLSRFDRAMTDG 810
Query: 511 SKVQEALELMSSAENTNV----LKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARI 566
+ A+++++S + N+ + ++ G+ EPF+ + Q + A +L L+ +AR+
Sbjct: 811 ---KSAVDMLTSFVDENMTTVSIARMIKSGFMDSNEPFVKTVLQLWRAWSLKTLKEKARL 867
Query: 567 FIQNGQAMMGCLDEKGTLEYGQ----------------------------------GLMV 592
++ G ++GC+DE GTL GL +
Sbjct: 868 AVEKGAFVLGCVDETGTLRGHSKATEGRQRIRRDQLPQIFLQIPDRDDPSGYKAIAGLCI 927
Query: 593 VAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDH 652
+ + P LHPGD+RV+ AVDVPAL H+ D V+FP +G+R + CSG D DG+ +FV WD
Sbjct: 928 IGRNPSLHPGDIRVVEAVDVPALRHLRDVVVFPLEGDRDVPSMCSGGDLDGDDFFVIWDE 987
Query: 653 DRIPP-LQFQPTAYTPAPEKIL-ARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEP 710
+P P +TP P ++ +E + +F ++ ND L I +AH+ A +EP
Sbjct: 988 KLLPTEWSHPPMDHTPQPPVTSDSKKSIMESLASFFVLFMKNDRLPFIAHAHLATADAEP 1047
Query: 711 DKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNL 770
A S +C L +++ + ++SK +L + +P FME+Q K Y S+ +G L
Sbjct: 1048 QGAKSEKCLKLAEMTGVPAEWSK---------KLNPRSWPHFMERQ-KGSYHSKTALGQL 1097
Query: 771 YREVNGIA-PSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLM 829
Y V+ ST +S + Y D EV K +T+YD + ++
Sbjct: 1098 YDMVHTQDFDSTKNYQSPFDRRILSRYMLDQEVLKTAR--------KIKTQYDIAMRRIL 1149
Query: 830 DYYGIKTEAEMLSRCIMEMAKSFDKKRDLEAISFSVRSLRKEARA 874
I+TE E+ + +M + + E + +LR++ RA
Sbjct: 1150 GMLEIRTEFEVWTGFVMFKPRVGSDYKVQEKVGREAAALREQFRA 1194
>gi|452837097|gb|EME39040.1| hypothetical protein DOTSEDRAFT_110589, partial [Dothistroma
septosporum NZE10]
Length = 1155
Score = 267 bits (683), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 228/740 (30%), Positives = 336/740 (45%), Gaps = 126/740 (17%)
Query: 223 LEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKI---LVTPSKVY 279
LE + R+ YDP LR Q + V + P Y KI VTPS ++
Sbjct: 370 LEKIADGRQRYYDPYEILRLQSQVSVVEKKRPA-----------YCTKIPAVTVTPSTLH 418
Query: 280 FCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERV 339
F P + SNRVVR Y D FLR+ F DE L+ + PQ + E ++ R+
Sbjct: 419 FATPVLETSNRVVRQYQQYQDRFLRVKFRDE----LHKGKIFPQDDHSESE----VFSRI 470
Query: 340 LSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKY 399
+ +G+ IGD+ +E LAF +SQ RE+ + FAS LTAADIR+ MG+F IK V KY
Sbjct: 471 SRAMTHGVKIGDRIYEFLAFGSSQFREHGAYFFASTAALTAADIRKWMGNFTHIKVVAKY 530
Query: 400 AARLGQSFASSREALHVDSNI-----------------GKISAELAETVAKKCGYAIYT- 441
ARLGQ F+++R H NI GKIS LA +A G
Sbjct: 531 CARLGQCFSTTRSIPHA-VNIETISDIERNGHCFTDGSGKISPFLARLIAHHYGLPNSDD 589
Query: 442 --PSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLDILANSKYQREGVARL 486
PSAFQ R G K + +R + K+ +E+ L+I S+Y A L
Sbjct: 590 DHPSAFQFRLAGCKGVLSVDPALRGLTIQIRPSQQKFAAEAFGLEICRISQY---SAAYL 646
Query: 487 RL------------DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTN----VLK 530
+ D VF + R ++ D + K AL L+ + N L
Sbjct: 647 NMQIILVLSALGVPDEVFIARVRTMLKDFDEAMKSEDK---ALILLQKNIDYNQMTLTLA 703
Query: 531 ELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLE-YGQ- 588
++ G+ +PF + + + A +L L+ +AR+ ++ G + DE G L Y
Sbjct: 704 SMIMDGFMETKDPFTTTCLRLWRAWSLKYLKEKARVLVEEGFFGIASPDETGILRGYSDD 763
Query: 589 ---------------------------------GLMVVAKKPCLHPGDMRVLRAVDVPAL 615
G+ +A+ P LHPGD+RV+RAVDVP L
Sbjct: 764 SPSVDEVQKDGDLPEIFLQIPDPDTPGKYIVLLGVCALARNPSLHPGDVRVVRAVDVPEL 823
Query: 616 HHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ-FQPTAYTPAPEKILA 674
HH + V+ P G+RP N CSG D DG+ + V WD D IPP + +P YT
Sbjct: 824 HHKKNEVILPITGDRPLANMCSGGDLDGDDFMVIWDKDLIPPERNHEPMDYTSPTPATSE 883
Query: 675 RDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKT 734
VT+ D+ +F +YI ND+L I AH +A + D +C L L S+ D+ KT
Sbjct: 884 GVVTVADMSRFFVNYIKNDNLARIATAHRYWADWQDDGVKDPKCLALANLHSMAVDYVKT 943
Query: 735 GVAATIPSRLRVKIYPDFMEKQDKT---WYESQHIVGNLYREVNGIAPSTTTIKSFAKEG 791
GV A +P+ L+VK++P + E + K+ Y S+ ++G LY EV +S
Sbjct: 944 GVPAYMPADLKVKMWPHWSEPKGKSKRKVYTSKKVLGQLYDEVKR--------ESVVAAW 995
Query: 792 AMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKS 851
M F D + E +M D + + YD + M +GIKTE E+ + ++E +
Sbjct: 996 DMPFDDRILSACDPTE-SMLDDAREIKALYDEAVRRAMAQHGIKTEFEVFTTFVLEHHQD 1054
Query: 852 FDKKRDLEAISFSVRSLRKE 871
+ + E + +LR++
Sbjct: 1055 INDYKFAETMGEVASNLRQQ 1074
>gi|156035913|ref|XP_001586068.1| hypothetical protein SS1G_13161 [Sclerotinia sclerotiorum 1980]
gi|154698565|gb|EDN98303.1| hypothetical protein SS1G_13161 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1404
Score = 267 bits (682), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 203/672 (30%), Positives = 316/672 (47%), Gaps = 109/672 (16%)
Query: 267 YVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDN--FLRLSFVDEDL-GKLYSTVLSPQ 323
+ K VTPS +YF P + +NRV+R+Y E FLR+ F DE G++ +
Sbjct: 450 FSRKATVTPSSIYFSSPTVETTNRVLRNYSKENKEGRFLRVQFTDEKAEGRINACA---- 505
Query: 324 ISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADI 383
+ R ++ RV + NGI IGD+ +E LAF NSQ REN + F L+ DI
Sbjct: 506 ----DKIRNDGLFTRVFRVISNGIRIGDRHYEFLAFGNSQFRENGAYFFCPPAYLSCDDI 561
Query: 384 RERMGDFREIKNVTKYAARLGQSFASSREALHVDS------------------NIGKISA 425
R+ MG F I V KYAARLGQ F+++R + + +GKIS
Sbjct: 562 RQWMGTFSHINVVAKYAARLGQCFSTTRAIRGLSAPDLVKIPDIERNGYCFTDGVGKISP 621
Query: 426 ELAETVAKKCGYAIYT-PSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLD 471
LA+ +A++ + PSAFQ R GG K V +R + K+ + L+
Sbjct: 622 FLAQMIAEELKLRTNSAPSAFQFRLGGCKGILVVSPDAKNNEVHIRKSQQKFTAVYNGLE 681
Query: 472 ILANSKYQREGVARLRL---------DNVFERKQREVVARLDAILTDSSKVQEALELMS- 521
I+ S++ + R + D VF E ++ +++++ AL L++
Sbjct: 682 IIRCSQFSSATLNRQTITILSSLGVKDEVFLNMLSEQLSDYQNAMSNNTI---ALNLLNR 738
Query: 522 ----SAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGC 577
+ N+ +LN G+ + EPF+ + + A ++ L+ +A+I ++NG ++GC
Sbjct: 739 YIDDNYMTINIASMILN-GFMTEKEPFVLSLLHLWRAWSIKLLKEKAKIIVENGAFVLGC 797
Query: 578 LDEKGTL---------------------------------EYG--QGLMVVAKKPCLHPG 602
+DE TL +Y +G+ +V + P LHPG
Sbjct: 798 VDETNTLRGYTKPTVACGTTYKEDELPQIFIQVPNRENTGQYNVIEGICLVGRNPSLHPG 857
Query: 603 DMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPP-LQFQ 661
D+RV++AV+VPALHH+ D V+FP GER + CSG D DG+ +FV WD + P +
Sbjct: 858 DLRVVQAVNVPALHHLRDVVVFPQSGERDVPSMCSGGDLDGDDFFVIWDKNLQPSEWNCE 917
Query: 662 PTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDL 721
P +Y L R V + D+ ++F Y+ NDSL I +AH+ A + +C +L
Sbjct: 918 PMSYAALAPVTLKRPVKVRDLLKFFVKYMKNDSLPTIAHAHLAQADLLGNGIKDPKCLEL 977
Query: 722 VKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTW---YESQHIVGNLYREVNGIA 778
+L S D+ KTG A + L + +P FMEK K Y S I+G LY +V +
Sbjct: 978 AELHSKAVDYVKTGQPANMSRYLAPQKWPHFMEKTHKPLSKQYHSTKILGQLYDKVESLH 1037
Query: 779 PSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEA 838
+ F K ++ Y + N E A Q +T+YD + ++ IKTE
Sbjct: 1038 FVPQYEEPFDKR-ILRAYKLE---NPILEAARQ-----TKTKYDTAMRRILAQQDIKTEF 1088
Query: 839 EMLSRCIMEMAK 850
E+ S I+ K
Sbjct: 1089 EVWSTFILSKPK 1100
>gi|17227102|gb|AAL38011.1|AF443073_1 putative RNA-dependent RNA polymerase [Phomopsis sp. CMW 5588]
Length = 1122
Score = 266 bits (681), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 186/592 (31%), Positives = 277/592 (46%), Gaps = 94/592 (15%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDE-DLGKLYSTVLSPQISS 326
V + ++TP+ +YF P + L+NR++R Y D D FLR+ F DE GK++S S
Sbjct: 172 VRRAVITPTTIYFKTPCVELTNRILRKYSDLNDRFLRVQFTDEITFGKIFS--------S 223
Query: 327 TNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRER 386
+ + +Y RV ++NGI IGD+ + LAFSNSQ REN + F +T IRE
Sbjct: 224 QDSNKDDNLYIRVHRVMQNGISIGDRHYRFLAFSNSQFRENGAFFFCETDHVTCDSIREW 283
Query: 387 MGDFREIKNVTKYAARLGQSFASSRE----------------------ALHVDSNIGKIS 424
MGDFR I++V K+AAR+GQ F ++R+ + +GKIS
Sbjct: 284 MGDFRHIRSVGKFAARMGQCFTTTRQVNGISIPNIRKIDDIERQTGDHTWNFTDGVGKIS 343
Query: 425 AELAETVAKKCGYAIYTPSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLD 471
A+ +A + TPS FQ+R GG K V +R + K+K+ L+
Sbjct: 344 NFFAKLIASERDLP-ETPSCFQMRIGGGKGVLVVWPDVPPSEVHVRPSQEKFKAVYNVLE 402
Query: 472 IL-----ANSKYQREGV---ARLRLDN-VFERKQREVVARLDAILTDSSKVQEALELMSS 522
I+ +++ + ++ + L +DN VF + + D L DS K E L
Sbjct: 403 IIKTFAFSHATFNKQVIPVLVALGVDNSVFVSMLDDELREYDEALADSMKAGELLRSQVD 462
Query: 523 AENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKG 582
T + + + EPFL + + + L L+ + I ++ + G +DE G
Sbjct: 463 ENQTTLTMAEMVDTFMDSKEPFLWTLLRLWKCWILKRLKHKFAISVKKSAMVFGVVDEIG 522
Query: 583 TL--------------------------------------EYGQGLMVVAKKPCLHPGDM 604
L E G+ VV + P LHPGD+
Sbjct: 523 VLRGHSQATEGRGYNSIESLPQIFLQVPIEGSDGRSTTNYEVITGICVVGRNPSLHPGDV 582
Query: 605 RVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTA 664
RV+ AVDVP L H+ + V+FP G+R + CSG D DG+ YFV WD IP P
Sbjct: 583 RVVEAVDVPELRHLKNVVVFPKTGDRDIPSMCSGGDMDGDDYFVYWDERLIPTEWDHPPL 642
Query: 665 YTPAPEKILAR--DVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLV 722
A L + DVTIEDV +FA Y+ NDSLG I AH A + +C +L
Sbjct: 643 NHDAGSSTLDKPADVTIEDVTRFFAQYMKNDSLGRIATAHFAQADQLSGGVKNPKCIELA 702
Query: 723 KLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREV 774
KL S+ D+ K+G A + L+ + +P +MEK+ K+ Y S +G +Y +
Sbjct: 703 KLHSMAVDYIKSGRPAVMKRHLQPRKWPHWMEKEKKSNYRSYSALGKIYDRI 754
>gi|391341002|ref|XP_003744822.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2-like
[Metaseiulus occidentalis]
Length = 1356
Score = 264 bits (675), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 204/694 (29%), Positives = 326/694 (46%), Gaps = 112/694 (16%)
Query: 264 GLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQ 323
G+ + K+ +TPS+ PE NR++R D LR++F D++L KL +
Sbjct: 399 GMAIIYKVFLTPSRTILRPPEEHGENRILRQVSR--DYMLRVAFRDDNLEKLTHNL---- 452
Query: 324 ISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE-LTAAD 382
T E R + + LR+GI I ++ +E LA S+SQ R++ W +A +
Sbjct: 453 ---TREEGRNFLEYFLKGFLRDGIEIENRTYEYLAASSSQLRDHGCWYYAKDEHGRDSKS 509
Query: 383 IRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN----------------------- 419
IRE MG F +IKNV K AR G F+S+ E + V +
Sbjct: 510 IREEMGSFDDIKNVGKKMAREGLCFSSTIETVKVSEDECTIEEDITGGAHEKSNKPYTFS 569
Query: 420 --IGKISAELAETVAKKCGYAIY--TPSAFQIRYGGYK-------------VTLRNNMFK 462
IGKISAEL + V + ++ PSAFQIR+ G K + LR +M K
Sbjct: 570 DGIGKISAELRDDVCEALKDSLRDKKPSAFQIRFRGAKGMVAFDPCLEGRRLVLRKSMVK 629
Query: 463 YKSESTSLDILANSKYQREGVARLRLDNVFER-----------KQREVVARLDAILTDSS 511
+ S S+S + R ++ + E+ ++ ++ DA+L ++
Sbjct: 630 FASTSSSSFEVIKYSEDRSLTLNKQIITILEQLGVPAEIFLRYQEANIIDFADALLFEN- 688
Query: 512 KVQEALELMSSAENTNVL--KELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQ 569
+ E L + V+ + G +P+ M + + LR +ARI I
Sbjct: 689 QAHERLTASIKKDPDCVIDFSKFREFGMSVVRDPYFRAMLIELYRYIITNLRDKARISIP 748
Query: 570 NG--QAMMGCLDEKGTLEYGQ-------------------------------------GL 590
G + ++G +DE G LEYGQ G
Sbjct: 749 WGLGRNLLGVIDETGKLEYGQVYVRYTPREDTSGPDIKVDNNTDEDGVPRQAGTEVVKGR 808
Query: 591 MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
++V K PC+HPGD+R+L AVD+P L H+VD ++FP KG RPH NE +GSD DG+ Y V W
Sbjct: 809 VLVTKCPCVHPGDVRMLEAVDIPELAHLVDVIVFPQKGPRPHPNEMAGSDLDGDEYAVIW 868
Query: 651 DHD-RIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSE 709
D + +P + AP + + + +ED + +I+ND+ G I NAH+ +A E
Sbjct: 869 DQNFFFADGNHRPMIFDDAPAEP-SESLELEDYYNFICQFILNDNKGTISNAHLAHADRE 927
Query: 710 PDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQD-KTWYESQHIVG 768
D S++C L + S+ DF+KTG + VK+YPDFM+KQD K Y S+ ++G
Sbjct: 928 EDGIFSDKCLRLAEKVSMTLDFAKTGRLTQLEPSEVVKVYPDFMQKQDHKATYRSEKVLG 987
Query: 769 NLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNL 828
LYR + T+K + ++ + + E+ G++E D + +Y+++L N+
Sbjct: 988 KLYRASRALE---ITVKQGSSGCEERYVNENFELEGWEEKKQ--DALIFVEKYEHRLTNI 1042
Query: 829 MDYYGIKTEAEMLSRCIMEMAKSFDKK-RDLEAI 861
M GI++EAE++ + +++K K DLE +
Sbjct: 1043 MGRMGIQSEAEIMVSIVTQVSKYMSKSFHDLEEL 1076
>gi|340521639|gb|EGR51873.1| predicted protein [Trichoderma reesei QM6a]
Length = 1161
Score = 263 bits (673), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 211/736 (28%), Positives = 350/736 (47%), Gaps = 134/736 (18%)
Query: 218 DGKHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSK 277
D K LE L + YDP ++ +S P + + + K VTP+
Sbjct: 297 DAKRRLEFLADQGDVMYDP----KDLLNWAAASTYMPNT---RIPHYCVLARKAAVTPTT 349
Query: 278 VYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDE-DLGKLYSTVLSPQISSTNGERRTRIY 336
+ P + SNRV+R + D FLR+ FV+E + G++ +S N E ++
Sbjct: 350 ILLSTPVVETSNRVLRYFNHIQDRFLRVQFVEETEFGRM-------AMSCRNKED---VW 399
Query: 337 ERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNV 396
+++L TL GI IGD+ ++ LAF +SQ R+ + F ++ DIR MG+ I+ V
Sbjct: 400 KKILRTLYQGIQIGDRHYQFLAFGSSQLRQCGAYFFCPTDHISCDDIRRWMGEVGHIRIV 459
Query: 397 TKYAARLGQSFASSREAL-----------HVDSN-------IGKISAELAETVAKKCGYA 438
KYAARLGQ F+++RE V+ N +G IS +A+ + ++
Sbjct: 460 AKYAARLGQCFSTTREMRGLPIPDVRSIPDVERNGYCFTDGVGIISDFMAQMIMEELTLD 519
Query: 439 IYT-PSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLDILANSKYQREGVA 484
+Y PSAFQ R GG K V +R + K+K+E +L+I+ +KY +
Sbjct: 520 VYAEPSAFQFRMGGCKGVLVVWPQATKGEVCIRQSQEKFKAEVKNLEIIKCAKYSSATLN 579
Query: 485 RLRLDNVFERKQREVVARLDAILTDSSKVQE--------ALELMSSA----ENTNVLKEL 532
R + + E A LD IL + ++ E A+E++++ ++T +L EL
Sbjct: 580 RQTI-TILECLGVTKKAFLD-ILEEQIRLYEEAMGKNDVAIEMLTNCVDENQSTLILAEL 637
Query: 533 LNCGYKPD--AEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL------ 584
L G+K D EPF++ + + + +L L+ +ARI + ++GC+DE TL
Sbjct: 638 LQAGFKTDKVQEPFVANLLSLWRSWSLKLLKEKARIPVDKSAFVLGCVDETSTLRGHFIA 697
Query: 585 ----------------------------EYGQGLMVVAKKPCLHPGDMRVLRAVDVPALH 616
+GL VV + P LHPGD+RV+ AVD+P LH
Sbjct: 698 TEGSSDKDISKLPQIFLQVSDSKIYNKTHVVKGLCVVGRNPSLHPGDIRVVEAVDIPGLH 757
Query: 617 HMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTA-YT-PAPEKILA 674
H+ D V+FP+ G+RP N SG D DG+ +FV W+ +P + P YT P+PE L
Sbjct: 758 HLKDVVVFPSTGDRPVPNMLSGGDLDGDDFFVIWEPTLLPEIWNHPAMNYTSPSPE-TLD 816
Query: 675 RDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKT 734
R+V ++D+ ++F Y+ ND L +I AH+ A ++ +S C L L S D+ KT
Sbjct: 817 REVNVDDLRDFFVKYMKNDVLPLIATAHL--ALADRLGPLSKICLHLADLHSQAVDYPKT 874
Query: 735 GVAATIPSRLR-VKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAM 793
G A + + + +P FMEK++ Y S +G++Y V K+ ++
Sbjct: 875 GQPAEWNAAMHNPQQWPHFMEKKNS--YISPKALGDIYNRV--------------KQQSI 918
Query: 794 QFYDTDMEVNGFKEVAMQF--------DGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCI 845
QF D E + + +F D + +++YD + ++ ++ ++TE E+ +
Sbjct: 919 QF-QPDWETAFDRRILDRFEPDNATLRDARRIKSQYDGAVRRILVHHNLETEFELYTSWA 977
Query: 846 ME---MAKSFDKKRDL 858
M + + ++ DL
Sbjct: 978 MSKPPLGSEYKRQEDL 993
>gi|336264581|ref|XP_003347067.1| hypothetical protein SMAC_05269 [Sordaria macrospora k-hell]
gi|380093080|emb|CCC09317.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1703
Score = 263 bits (671), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 180/582 (30%), Positives = 283/582 (48%), Gaps = 87/582 (14%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
V ++ +TP+++YF P + +NRV+R + D F+R+ F DE VL +I S
Sbjct: 534 VRRVTITPTRIYFSTPYVEPTNRVIRQWRFAQDYFIRIQFTDE--------VLEGRIRS- 584
Query: 328 NGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERM 387
GE ++ R L+ GI +G ++ LAF NSQ RE +MF + +LT +R M
Sbjct: 585 -GEAELPLFLRAYRVLQEGIAMGLWHWKFLAFGNSQIREAGAYMFCEQSDLTCDMMRSWM 643
Query: 388 GDFREIKNVTKYAARLGQSFASSR------------------EALHVDSNIGKISAELAE 429
G F IK + KYAARLGQ F+++R + +GKIS LA+
Sbjct: 644 GRFSHIKVIAKYAARLGQCFSTTRLVPGIPAPRIVTIPDVEKDGFCFTDGVGKISPLLAK 703
Query: 430 TVAKKCGYAIYTPSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLDIL--- 473
+ + PSAFQ R GG K V +R + K+ +E L+++
Sbjct: 704 IITHEWSLD-RLPSAFQFRMGGCKGVLVTWPDVKGMEVHIRKSQEKFVAEFNGLEVIKCS 762
Query: 474 --ANSKYQREGVARLR----LDNVFERKQREVVARLDAILTDSSKVQEAL-ELMSSAENT 526
A + R+ +A L D VF + ++ +A + D K E L + + T
Sbjct: 763 AFATATLNRQTIAVLSSLGVPDQVFVDMMEKQLSDYNAAMVDKRKATEYLRKYVDENHIT 822
Query: 527 NVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEY 586
++ ++L+ G+ EPF+ + Q + + ++ L+ +AR+ ++ ++GC+DE TL+
Sbjct: 823 PIIAQMLSYGFMESQEPFVRTLLQLWRSWSIKTLKEKARLSVEKSAFVLGCVDESRTLKG 882
Query: 587 GQ---------------------------------GLMVVAKKPCLHPGDMRVLRAVDVP 613
G VV + P LHPGD+RV+ AVDVP
Sbjct: 883 HMKVIEGWKDVPSEKLPQIFLQIPDNVNDGYKVITGTCVVGRNPSLHPGDIRVVEAVDVP 942
Query: 614 ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYT-PAPEKI 672
AL H+ D V+FP G+R + CSG D DG+ +FV WD +P + P P K
Sbjct: 943 ALRHIRDVVVFPLTGDRDVPSMCSGGDLDGDDFFVIWDPLLVPNERSHPPMINEPVVGKE 1002
Query: 673 LARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFS 732
LA + T+ ++ +F Y+ +++L +I +AH+ A +E D S++C +L L S+ D+
Sbjct: 1003 LANEPTVNNLVTFFVLYMKHNNLPLIAHAHMATADAEMDGVKSSKCLELAILHSMAVDYV 1062
Query: 733 KTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREV 774
KTGV A P RL K +P FMEK+ + Y S +G LY V
Sbjct: 1063 KTGVPAVFPKRLDPKSWPHFMEKKKRD-YHSATALGKLYDMV 1103
>gi|391332207|ref|XP_003740528.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Metaseiulus
occidentalis]
Length = 1437
Score = 258 bits (660), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 210/687 (30%), Positives = 332/687 (48%), Gaps = 106/687 (15%)
Query: 240 LREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEI 299
LR + H S P+ + G Y+ +I +TP++ F PE+ NR++R++ E
Sbjct: 383 LRTLFAIHDQSLIEPSDEEHSHIPGTAYIRRIFITPTRKIFRFPELHTQNRILRNF--EP 440
Query: 300 DNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAF 359
D +R+ F D++L KL + + + + + + E V L G+ IG ++++ +A
Sbjct: 441 DYAIRVCFRDDNLEKLTFAIFNMKT------KESFLKEVVGRHLCEGLKIGSRRYDFVAA 494
Query: 360 SNSQERENTLWMFA-SRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHV-- 416
S+SQ R++ +W++A + A IR MGDF +I NV AR+GQ F+S++E + +
Sbjct: 495 SSSQLRDHGVWVYARDQFGFEAETIRGWMGDFHDINNVATRMARMGQCFSSTQETVEILP 554
Query: 417 -------------------------DSNIGKISAELAETVAKKCGYAIYT--PSAFQIRY 449
GKIS EL + V + PSA QIRY
Sbjct: 555 EEELHWRDITHFESVHPLSGRPYCFSDGCGKISQELMQQVWCTLPHHAMELHPSALQIRY 614
Query: 450 -------------GGYKVTLRNNMFKYKSEST-SLDIL-----ANSKYQREGVARL---- 486
G K+ LR +M K++ S L+++ N R +A L
Sbjct: 615 RGCKGMISLDTTLPGRKLVLRESMIKFQCTSPRKLEVIKWSAPMNMFLNRSLIAILEHHG 674
Query: 487 -RLDNVFERKQREVVARL-DAILTDSSKVQEALELMSSAENTNV-LKELLNCGYKPDAEP 543
R D VF R Q E++ ++ D+++ ++S AL +++S T V L G++ +P
Sbjct: 675 IRTD-VFLRLQLEMIMQVADSLVCEAS----ALRVLTSFVKTPVPFAGLAEVGWELVRDP 729
Query: 544 FLSMMPQTFHASNLLELRTRARIFI--QNGQAMMGCLDEKGTLEYGQ------------- 588
F+ M + L+ L+ +A + I G+ M+G +DE G L+YGQ
Sbjct: 730 FIIQMLYDLLKNALVNLKVKANVAIPVNEGRNMLGVVDETGILDYGQVFIQFTEMPYTDV 789
Query: 589 ---------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGS 639
G +V+ K PC+HPGD+R LRAVDVP L H+ DCV+FP++G+ PH E SGS
Sbjct: 790 SNARVRIVEGDVVITKCPCMHPGDVRRLRAVDVPQLRHIRDCVVFPSRGKAPHPFEMSGS 849
Query: 640 DQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIIC 699
D DG+ Y W + I P Y P + D +F +YI ND +GII
Sbjct: 850 DLDGDEYVCIWSEELIFERNAMPYVYDDKPFGVNPFKHN-SDETNFFCNYIGNDIIGIIS 908
Query: 700 NAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQD-K 758
NAH+ A+++ S +C LV +S DF+KTG AA + + + +PDFMEK D K
Sbjct: 909 NAHL--AWADQAGIASEKCLALVGKASKALDFAKTGDAADLYPNEKPEKFPDFMEKGDHK 966
Query: 759 TWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYR 818
Y+SQ +G LYR V I T+ S +G + +EV G++ + R
Sbjct: 967 HSYQSQKALGILYRTVRQIMAVNDTMLS---KGNI----APLEVPGWQMFRERAQAALQR 1019
Query: 819 TEYDNKLGNLMDYYGIKTEAEMLSRCI 845
Y+ +L ++M+ +G+ +E E+ S I
Sbjct: 1020 --YNERLAHIMEQHGVVSEGEVFSGVI 1044
>gi|358384867|gb|EHK22464.1| hypothetical protein TRIVIDRAFT_28428 [Trichoderma virens Gv29-8]
Length = 1158
Score = 256 bits (653), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 192/638 (30%), Positives = 304/638 (47%), Gaps = 102/638 (15%)
Query: 218 DGKHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSK 277
D K LE L E Y+P +E + ++ P + + + K +TP+
Sbjct: 289 DAKRRLEFLLDNGEVMYNP----QELFTWSAAASYVPNT---RIPHYCVLARKAAITPTS 341
Query: 278 VYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDE-DLGKLYSTVLSPQISSTNGERRTRIY 336
+ P + SNRV+R + D FLR+ FV+E + G++ ++S N E ++
Sbjct: 342 ILLSSPIVETSNRVLRYFNHIQDRFLRVQFVEEMESGRI-------AMTSRNKED---VW 391
Query: 337 ERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNV 396
+++L TL GI IGD+++E LAF +SQ R+ + F ++ DIR MG+ I+ V
Sbjct: 392 KKILRTLYEGIQIGDRRYEFLAFGSSQLRQCGAYFFCPTDHISCDDIRRWMGEVGHIRIV 451
Query: 397 TKYAARLGQSFASSRE--ALHV----------------DSNIGKISAELAETVAKKCGYA 438
K+AARLGQ F+++RE L V +G IS +A + ++
Sbjct: 452 AKHAARLGQCFSTTREMRGLPVPDVRRIPDIERNGYCFTDGVGMISEFMARMIIEEMTLD 511
Query: 439 IYT-PSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLDILANSKY-----Q 479
+YT P+AFQ R GG K V +R + K+K++ L+I+ +KY
Sbjct: 512 VYTEPTAFQFRMGGCKGVLVVWPQAKKGEVYIRESQEKFKADVKGLEIIKCAKYSSATLN 571
Query: 480 REGVARLRLDNV-----FERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELLN 534
R+ + L V ++++ +A+ ++ V + + ++T +L ELL
Sbjct: 572 RQTITILECLGVSTPAFLAILEKQISLYEEAMKNNNVAVNILTKCVDENQSTLILAELLQ 631
Query: 535 CGYKPDA--EPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLE------- 585
G+K D EPF++ + + + +L LR +ARI I+ ++GC+DE G L
Sbjct: 632 SGFKTDTVQEPFVTNLLALWRSWSLKLLRDKARIPIEKSAFVLGCVDETGILRGHSNATE 691
Query: 586 ----------------------YGQ-----GLMVVAKKPCLHPGDMRVLRAVDVPALHHM 618
Y Q G+ +V + P LHPGD+RV+ AVD+P LHH+
Sbjct: 692 GTVDKDINKLPQIFLQVSDSKVYDQANAIEGVCIVGRNPSLHPGDIRVVEAVDIPELHHL 751
Query: 619 VDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTA-YTPAPEKILARDV 677
D V+FP+ G+RP N SG D DG+ +F+ W+ IP P Y+ L RDV
Sbjct: 752 KDVVVFPSTGDRPVPNMLSGGDLDGDDFFIIWEPTLIPTEWNHPAMNYSSPSPATLDRDV 811
Query: 678 TIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVA 737
D+ ++F Y+ ND L +I AH+ A S D S+ C L +L S D+ KTG
Sbjct: 812 NANDLRDFFVRYMQNDVLPLIATAHLGLADS--DGPKSDICLRLAELHSQAVDYPKTGEP 869
Query: 738 ATI-PSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREV 774
A P K +P FM+K K Y+S+ +G +Y V
Sbjct: 870 AEWNPGLHNPKEWPHFMDK--KVCYKSKKALGAIYNRV 905
>gi|226291786|gb|EEH47214.1| predicted protein [Paracoccidioides brasiliensis Pb18]
Length = 1257
Score = 256 bits (653), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 195/607 (32%), Positives = 304/607 (50%), Gaps = 86/607 (14%)
Query: 264 GLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDE-DLGKLYSTVLSP 322
G Y+ VTPS +Y+ P I NR+ R Y + D FLR+ F DE ++GK++
Sbjct: 399 GYYYMRSAEVTPSTIYYKPPSIDTGNRIFRRYLEYADRFLRVRFTDEKNMGKIFP----- 453
Query: 323 QISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAAD 382
S+ N +Y RV T++NGI IGD+ +E LAFSN+Q RE+ + FAS P LTAA+
Sbjct: 454 -YSNANIVCMNEVYTRVTLTMKNGITIGDRCYEFLAFSNAQLREHAAYFFASLPHLTAAN 512
Query: 383 IRERMGDFREIKNVTKYAARLGQSFASSREALHVDSNIGKISAELAETVAKKCGYAIYT- 441
I + + EI ++ R G +F+ +G IS LA+ + + +AI T
Sbjct: 513 ILQIV----EIDDIE----RNGYTFSDG---------VGLISKFLAQMIQSE--FAIETL 553
Query: 442 ----PSAFQIRYGGYKV------TLRNNMFKYKSESTSLDILANSKYQREGVARLRLDNV 491
PS FQ R GG K +R++ F + S + L I+ +S G+ D +
Sbjct: 554 SGEPPSVFQFRLGGCKAPHNGLEIIRHSSFCFASLNRQLIIVLSSL----GIP----DEM 605
Query: 492 FERKQREVVARLDAILTDSSKVQEALELMSSAENTN----VLKE----LLNC-------- 535
F +K + ++ L+ +T ++A++L+ + + N VL + LL C
Sbjct: 606 FVKKLQAMLENLELAMTSQ---EQAIDLLQTYVDPNQMTLVLADMGAFLLGCLDETGSLK 662
Query: 536 GYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQGLMVVAK 595
GY F S P A+ +L IF+Q + +GT E +GL ++A+
Sbjct: 663 GY------FRSKRPGG-GATYEQKLDCLPEIFVQISR------HSEGTYEVIEGLCILAR 709
Query: 596 KPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRI 655
P LHPGD+RV++AVD+P LHH+ D V+ P G+R + CSG D DG+ Y V WD D +
Sbjct: 710 NPSLHPGDIRVVKAVDIPGLHHLKDVVVLPQTGDRDIASMCSGGDLDGDDYVVIWDQDLL 769
Query: 656 PPLQF-QPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAM 714
P F +P Y+ K+L RDVT++D+ ++F Y+ ND L I AH+ A D
Sbjct: 770 PKDWFEEPMDYSAPKSKVLDRDVTVDDIIKFFVSYMQNDRLPQIALAHLTIADYSDDGVQ 829
Query: 715 SNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQ---DKTWYESQHIVGNLY 771
+C L L S D++K+G+ + LR K +P FME++ + Y S+ I+G LY
Sbjct: 830 DEKCLRLATLHSAAVDYNKSGIPVRMNQDLRPKKWPHFMERKFAMKDSQYTSRKILGQLY 889
Query: 772 REVNGIAPSTTTIKSFAKEGAMQFYDTDMEVN-GFKEVAMQFDGFKYRTEYDNKLGNLMD 830
G+ ++S + +G + F + N E + F + + EYD L +M
Sbjct: 890 DIAGGV---YLNLQSHSAKGRLPFDQRILNANFEIDEKLLSF-AKELKGEYDADLRRIMA 945
Query: 831 YYGIKTE 837
+ I++E
Sbjct: 946 QHEIQSE 952
>gi|452987327|gb|EME87083.1| hypothetical protein MYCFIDRAFT_202751 [Pseudocercospora fijiensis
CIRAD86]
Length = 1276
Score = 255 bits (651), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 216/802 (26%), Positives = 353/802 (44%), Gaps = 143/802 (17%)
Query: 186 KALKDFFHYKESLVQFTLLP----GFVFSCNSDLN-------QDGKHALEMLFHL---RE 231
+AL + HY +++ L G + CN D + D A+++L + +E
Sbjct: 226 EALTESLHYLPFKLRYQLEVCLSLGLLLECNIDRDFLKRLAEMDLTRAVKVLEKVADNKE 285
Query: 232 CCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRV 291
Y+P++ R Q + V + + P + ++VTPS +Y SNRV
Sbjct: 286 RVYEPMTIFRLQNQVSVVTKKKPDY--------CTEIGSVVVTPSTIYAATMVRETSNRV 337
Query: 292 VRSYPDEIDNFLRLSFVDEDL-GKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIG 350
+R + D D FLR+ F DE GK++S+ + R ++ R+ T+ +GI IG
Sbjct: 338 IRQFKDYEDRFLRVKFTDERYKGKIWSS---------DDNRMNEVFSRIKRTMTHGIQIG 388
Query: 351 DKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASS 410
D+ +E LAF NSQ RE+ + FA +LTA IRE MG F I+ + KY +RLGQ F+++
Sbjct: 389 DRHYEFLAFGNSQFREHGAYFFAPTEKLTAEMIREWMGRFSHIRVIAKYVSRLGQCFSTT 448
Query: 411 REALH-------VD---------SNIGKISAELAETVAKKCGYAIYT---PSAFQIRYGG 451
R H VD G +S LA +A PSA Q R G
Sbjct: 449 RAIPHKVDLGRSVDIERNGYCFTDGAGTMSPFLARMIALHHNVPNSEENFPSAVQFRLAG 508
Query: 452 -------------YKVTLRNNMFKYKSESTSLDILANSKYQREGVARLRL---------- 488
+ + +R + K+ +E L+I S++ A L +
Sbjct: 509 CKGVLAVDPALKGFAIQIRPSQEKFPAEYHGLEICRISQF---STANLNMQIILVLSALG 565
Query: 489 --DNVFERKQREVVARLDAILTDSSKVQEALEL-MSSAENTNVLKELLNCGYKPDAEPFL 545
D VF K R ++ + ++D K E L+ + ++ T +L ++ G+ +PF+
Sbjct: 566 IDDEVFLGKMRAMLVDIKEAMSDERKALELLQKNIDYSQTTILLATMIFDGFMETKDPFM 625
Query: 546 SMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL-------------------EY 586
+ + + L L+ +ARI+++ G + DE GTL E+
Sbjct: 626 ITCLRLWRSWCLKYLKEKARIYVEQGFFGLAVPDETGTLRGHYDKPVSADSDNADTSDEH 685
Query: 587 GQG-------------------------------LMVVAKKPCLHPGDMRVLRAVDVPAL 615
G + ++A+ P LHPGD+R +RAVD P L
Sbjct: 686 DAGSDEIASDEDLPEIFLQVPDPDAPGKYRVILSICILARNPSLHPGDVRKVRAVDKPEL 745
Query: 616 HHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILAR 675
HH+ D V+ P G+R N CSG D DG+ + V WD + IP P +P+ + +
Sbjct: 746 HHLRDVVVIPTTGDRDLANMCSGGDLDGDDFMVIWDPNFIPHGASHPPMDYTSPDPVTSD 805
Query: 676 D-VTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKT 734
V+++D+ +F +I ND+L I AH +A D +C +L +L S D+ KT
Sbjct: 806 GPVSVDDMTTFFVKHIKNDNLSSIAVAHRYWADQLADGVKDAKCIELAQLHSKAVDYPKT 865
Query: 735 GVAATIPSRLRVKIYPDFMEKQDKT---WYESQHIVGNLYREVNGIAPSTTTIKSFAKEG 791
GV A + L+V+ +P + E ++K+ Y S ++G LY EV + F
Sbjct: 866 GVPAVMTPGLKVQKWPHWSEPKNKSKSKIYHSNRVLGKLYDEVKK--------EPFHAAW 917
Query: 792 AMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKS 851
+ F D + M D + + EYD + +M +GIKTE E+ + +++ +
Sbjct: 918 DLPF-DQRILTACEPSDRMLADAREVKAEYDEAIQRIMTQHGIKTEFEIWTTFVLDHHQE 976
Query: 852 FDKKRDLEAISFSVRSLRKEAR 873
+ E I V +L +E R
Sbjct: 977 IGDYKFSETIGAIVTALVEEHR 998
>gi|425780985|gb|EKV18967.1| RNA-directed RNA polymerase (Sad-1), putative [Penicillium digitatum
PHI26]
Length = 1533
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 184/628 (29%), Positives = 294/628 (46%), Gaps = 99/628 (15%)
Query: 329 GERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMG 388
G+ IY RV TL NGI IGD+ +E LAF NSQ RE+ + FA ++AA IR MG
Sbjct: 702 GDSNDEIYTRVKRTLANGISIGDRHYEFLAFGNSQFREHGAYFFAPDAGVSAATIRAWMG 761
Query: 389 DFREIKNVTKYAARLGQSFASSR-----------------EALHVDSNIGKISAELAETV 431
F I+NV KYAARLGQ F+++R +GK+S LA+ V
Sbjct: 762 QFNHIRNVAKYAARLGQCFSTTRAFTGSSVQVATCNDVVRNGFTFSDGVGKVSKFLAQMV 821
Query: 432 AKKCGYAIYT---PSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLDILAN 475
+ T PSAFQ R GG K V +R + K+++ L+I+
Sbjct: 822 TSQHNIKTLTGESPSAFQFRLGGAKGMLVVSPDPMPQEVHIRPSQQKFETTQAGLEIIRW 881
Query: 476 SKYQREGVARLRL---------DNVFERKQREVVARLDAILTDSSKVQEALE-LMSSAEN 525
S+Y + R + D VF K ++ ++ + SK L+ + +
Sbjct: 882 SQYSLATLNRQLILVLSALGIPDKVFHSKLNSMLGSFHRVMCNDSKAINLLQKYIDPNQT 941
Query: 526 TNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLE 585
T +L ++++ G++ + EPF + M + + + +L L+ +A+I I G ++G +DE G L+
Sbjct: 942 TLILAQMVSDGFRQNEEPFANTMLELWKSWHLKHLKEKAKIAIDQGANLLGVMDETGVLK 1001
Query: 586 -------------YGQ-------------------------GLMVVAKKPCLHPGDMRVL 607
Y Q GL ++A+ P LHPGD+RV+
Sbjct: 1002 GYFKNTLPRRGASYAQKLAALPEIFVQICRLEGNGEYEVIEGLCILARNPSLHPGDIRVV 1061
Query: 608 RAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQF-QPTAYT 666
RAV+ P L + D V+ P G++ + CSG D DG+ Y + WD D IP F + Y
Sbjct: 1062 RAVNRPELKGLRDVVVLPQTGDQDIASMCSGGDLDGDDYLIIWDPDLIPTRWFVECMDYK 1121
Query: 667 PAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSS 726
+ L DVT++++ +F Y+ ND L I +AH+ +A P +C L +L S
Sbjct: 1122 GSKAPDLDHDVTVDEITSFFVTYMKNDCLPRIAHAHLAWADRLPRGVWEEKCIRLAQLHS 1181
Query: 727 IVGDFSKTGVAATIPSRLRVKIYPDFMEKQDK---TWYESQHIVGNLYREVNGIAPSTTT 783
D++K+G A + L K +P FMEK+ K + Y+S I+G LY V + P
Sbjct: 1182 DAVDYNKSGAHARMARSLDPKFWPHFMEKRFKRPSSIYKSTKILGQLYDAV--VTP---- 1235
Query: 784 IKSFAKEGAMQFYDTDME--VNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEML 841
+F + F +E + E +++ + + E+D + +M Y I TE E+
Sbjct: 1236 --NFVPKLGKPFDSRILESPLASASETYIEY-ARELKAEFDMNMRQIMAQYEINTEFEVW 1292
Query: 842 SRCIME---MAKSFDKKRDLEAISFSVR 866
S ++ + + + + DL I ++R
Sbjct: 1293 STFVLRHGFVIRDYKMQEDLGRIVGTLR 1320
>gi|19114207|ref|NP_593295.1| RNA-directed RNA polymerase Rdp1 [Schizosaccharomyces pombe 972h-]
gi|59800170|sp|O14227.1|RDR1_SCHPO RecName: Full=RNA-dependent RNA polymerase 1; Short=Protein rdp1
gi|2330856|emb|CAB11093.1| RNA-directed RNA polymerase Rdp1 [Schizosaccharomyces pombe]
Length = 1215
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 191/696 (27%), Positives = 325/696 (46%), Gaps = 100/696 (14%)
Query: 266 IYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQIS 325
I++ K+ VTP+ + + NRV+R++ D + F+R+ DE Y +
Sbjct: 452 IHIKKLYVTPTTLRIVEDSLEAGNRVIRNFKDFANRFMRVQITDE----YYKQKIR---G 504
Query: 326 STNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRE 385
++G R ++Y R+ L GI +G++ +E LAF NSQ RE+ + FAS +L A IRE
Sbjct: 505 GSDGFRNEKLYSRIQQLLTYGIKVGNQIYEFLAFGNSQLREHGAYFFASGSDLNAKQIRE 564
Query: 386 RMGDFREIKNVTKYAARLGQSFASSRE--------ALHVD---------SNIGKISAELA 428
MGDF EI +V+KYAAR+GQ F++++E +L D +G S +
Sbjct: 565 WMGDFSEINSVSKYAARMGQCFSTTKEINRFCVDISLQDDIVRNNHCFTDGVGMASLSVI 624
Query: 429 ETVAKKCGYAIYTPSAFQIRYGGYKVTL------------------RNNMFKYKSESTSL 470
++ + PSAFQ R GGYK L R + K+KS ++L
Sbjct: 625 RRLSLEVKNHDMFPSAFQFRMGGYKGVLSLAPPTKLEYHQGNLVFPRRSQDKFKSFHSTL 684
Query: 471 DILANSKYQREGVARLRLDNVFERKQREVVARLDAILTDSSKVQEALE------LM---- 520
+++ S++ + ++L + E E L+ + SK+ E++ LM
Sbjct: 685 EVIKISRFSNAHL-NMQLITLLEGLGVEKTVFLELTRSQLSKMNESINSKQKSILMLRDN 743
Query: 521 -SSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLD 579
+T ++ + + G+ + F + ++ L ++ + ++ + G ++G D
Sbjct: 744 VDEYHSTLIIADFIQAGFLERDDAFTENLLNLYYEWVLRLIKEKQKVSVPKGAYLLGVAD 803
Query: 580 EKGTLE-----------------------YGQ------------GLMVVAKKPCLHPGDM 604
E GTL+ +G GL +VA+ P LHPGD+
Sbjct: 804 ETGTLKGHYDDAVLSVPEIFIQITDTSTSFGSYSTGKLKTRVIVGLCIVARNPSLHPGDV 863
Query: 605 RVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTA 664
RV +AV L H+ + ++FP G+R CSG D DG+ Y V WD +P + P
Sbjct: 864 RVCKAVRCDELMHLKNVIVFPTTGDRSIPAMCSGGDLDGDEYTVIWDQRLLPKIVNYPPL 923
Query: 665 YTPAPEK---ILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAY---SEPDKAMSNRC 718
+P+K L I+ V+E+F +YI DSLG+I NA +A+ + P+ N C
Sbjct: 924 LESSPKKSIDFLEGKPLIDSVKEFFVNYIKYDSLGLISNAWKAWAHDHDNNPEGIFGNVC 983
Query: 719 PDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIA 778
+L ++ S DF+K+GVA + ++ K YPDFM+K + S+ VG ++R
Sbjct: 984 LELAEMHSKAVDFAKSGVACKMQAKYHPKRYPDFMQKTKTRSFRSETAVGKIFRYAARFQ 1043
Query: 779 PSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEA 838
+ ++ YD M++ FK + + + YDN L ++M + I TE
Sbjct: 1044 RESGRPATY-NPIMNTVYDPCMKLPRFKTEYLNV-AEEVKKHYDNDLRSIMARFDISTEY 1101
Query: 839 EMLSRCIM---EMAKSFDKKRDLEAISFSVRSLRKE 871
E+ + I+ ++AK+ ++ E +SF L+K+
Sbjct: 1102 EVYTAFILFKDDLAKTVNEYGLREEVSFQFDLLKKK 1137
>gi|213407476|ref|XP_002174509.1| RNA-directed RNA polymerase Rdp1 [Schizosaccharomyces japonicus
yFS275]
gi|212002556|gb|EEB08216.1| RNA-directed RNA polymerase Rdp1 [Schizosaccharomyces japonicus
yFS275]
Length = 1213
Score = 243 bits (621), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 186/673 (27%), Positives = 304/673 (45%), Gaps = 103/673 (15%)
Query: 263 GGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSP 322
GL V K+ +TP+ V + NRV+R + D FLR+ +E+ +
Sbjct: 446 SGLNSVKKVCITPTTVKVMDNSLEAGNRVIRHFSQYNDRFLRIQITEENTKRKIR----- 500
Query: 323 QISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAAD 382
S+ + ++ +Y RV + +GI+IG FE LAF NSQ RE+ + FAS + +A
Sbjct: 501 --SNPDALKQESVYARVYQLMSHGIIIGKTHFEFLAFGNSQLREHGAYFFASGEDESADS 558
Query: 383 IRERMGDFREIKNVTKYAARLGQSFASSRE-------------ALHVDS----NIGKISA 425
IR MGDF ++V KYAAR+GQ F+++++ + DS +G S
Sbjct: 559 IRNWMGDFSNNESVAKYAARMGQCFSTTKDLKRFQVKVEKRNDIIRNDSCFTDGVGMASL 618
Query: 426 ELAETVAKKCGYAIYTPSAFQIRYGGYKVTL------------------RNNMFKYKSES 467
+ + A + PSA Q R GGYK L R++ K+KS
Sbjct: 619 SVMKRTASEMDNEEMFPSAVQFRMGGYKGVLSLAPPTLLEYHKGNLVFTRDSQEKFKSNF 678
Query: 468 TSLDILANSKYQREGVARLRLD------------NVFERKQREVVARLDAILTDSSKVQE 515
T L+++ S++ A L + ++F + + L L D +
Sbjct: 679 TVLEVIKVSRFSH---AHLNMQLITLLEGLGVPTSLFVDLAKNELKELTISLKDPRRAVT 735
Query: 516 AL-ELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAM 574
L + +T +L +L+ CG+ + F + + + ++ + R+ ++ G +
Sbjct: 736 LLRNHVDEYRSTLILADLIACGFMQRNDSFTKNLINLYFEWVVRTIKEKQRLRVKEGAFL 795
Query: 575 MGCLDEKGTLE--YG---------------------------------QGLMVVAKKPCL 599
MG DE GTL+ Y GL VV + P L
Sbjct: 796 MGVADETGTLKGHYNDSVLPIPEVFIQITDPSKNADATVTGKIKTTIIMGLCVVVRNPAL 855
Query: 600 HPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ 659
HPGD+RV RAV L H+ + ++FP G+ T C+G D DG+ Y V WD + +P +
Sbjct: 856 HPGDVRVCRAVRCNELLHLKNVIVFPTTGDLSVTEMCAGGDLDGDEYTVIWDPNFLPKIV 915
Query: 660 FQPTAYTPAPEKILARD---VTIEDVEEYFADYIVNDSLGIICNAHVVYAY---SEPDKA 713
P A ++IL IE ++ +F YI +SLG+I N+ +A+ + PD
Sbjct: 916 NYPPYIDNAAKRILTFKEGVPPIESIKAFFVRYIKYESLGLISNSWKAWAHDRVNNPDGI 975
Query: 714 MSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYRE 773
+ C L L S D+ K+GVAA +P R K YPDFMEK+ ++ + + VG +YR
Sbjct: 976 FGSICLKLSALHSTAVDYPKSGVAAIMPQEYRPKAYPDFMEKEFRS-FPAMTAVGEIYRY 1034
Query: 774 VNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYG 833
+ + K YD M++ +K+ ++ K + +YDN L ++M ++
Sbjct: 1035 ASAF--QSQYFKKAYSSKLNNDYDETMKLPPYKQQYIEI-AKKSKEQYDNDLRSVMTHFD 1091
Query: 834 IKTEAEMLSRCIM 846
IKTE E+ + ++
Sbjct: 1092 IKTEYEIFTSFLL 1104
>gi|164429758|ref|XP_964248.2| hypothetical protein NCU02178 [Neurospora crassa OR74A]
gi|157073607|gb|EAA35012.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 1049
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 166/560 (29%), Positives = 265/560 (47%), Gaps = 92/560 (16%)
Query: 234 YDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVR 293
+DP+ E ++ H + FPTS + +V ++ +TP+++YF P + +NRV+R
Sbjct: 506 FDPM----ELFKDHAALAYFPTS--FMIPNHCAWVRRVTITPTRIYFSTPCVEPTNRVIR 559
Query: 294 SYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKK 353
+ D F+R+ F DE VL +I S GE ++ RV L G+ +G
Sbjct: 560 QWKHAQDYFIRIQFTDE--------VLEGRIKS--GEAELPLFLRVYRVLEKGVAMGPWH 609
Query: 354 FETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSR-- 411
++ LAF NSQ RE +MF + LT +R MG F IK + KYAARLGQ F+++R
Sbjct: 610 WKFLAFGNSQIREAGAFMFCEQSNLTGDMMRAWMGRFSHIKVIAKYAARLGQCFSTTRLV 669
Query: 412 ----------------EALHVDSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK-- 453
+ +GKIS LA+ VA PSA+Q R GG K
Sbjct: 670 PGIPAPRIVTIPDVEKDGFCFTDGVGKISPLLAKIVAHDWSID-PPPSAYQFRMGGCKGV 728
Query: 454 -----------VTLRNNMFKYKSESTSLDILANSKY-----QREGVARLR----LDNVFE 493
V +R + K+ +E L+++ S++ R+ +A L D VF
Sbjct: 729 LVTWPDVKGMEVHIRKSQEKFVAEFNGLEVVRCSQFSTATLNRQIIAVLSSLGVPDQVFV 788
Query: 494 RKQREVVARLDAILTDSSKVQEALE-LMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTF 552
+ ++ +A + D K L+ + T ++ E+L G+ EPF+ + Q +
Sbjct: 789 DMMEQQLSDFNAAMEDKQKATAILKTFIDENHMTPIIAEMLAYGFMGSQEPFVRTLLQLW 848
Query: 553 HASNLLELRTRARIFIQNGQAMMGCLDEKGTLE--------------------------- 585
+ ++ L+ +AR+ ++ ++GC+DE GTL+
Sbjct: 849 RSWSIKTLKEKARLNVEKSAFVLGCVDETGTLKGHMKVIEDWKDVSSEKLPQIFLQIPDD 908
Query: 586 ------YGQGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGS 639
G VV + P LHPGD+RV+ AVDVPAL H+ D V+FP G+R + CSG
Sbjct: 909 VNGGYRVITGTCVVGRNPSLHPGDIRVVEAVDVPALRHLRDVVVFPLTGDRDVPSMCSGG 968
Query: 640 DQDGEIYFVCWDHDRIPPLQFQPTAYT-PAPEKILARDVTIEDVEEYFADYIVNDSLGII 698
D DG+ +FV WD IP + P + P K LA + T+ ++ +F Y+ ++L +I
Sbjct: 969 DLDGDDFFVIWDPLLIPKERSHPPMISEPIAGKELATEPTVNNLITFFVLYMKYNNLPLI 1028
Query: 699 CNAHVVYAYSEPDKAMSNRC 718
+AH+ A +E + S +C
Sbjct: 1029 AHAHLATADAEVEGVKSPKC 1048
>gi|303322200|ref|XP_003071093.1| RNA-directed RNA polymerase, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240110792|gb|EER28948.1| RNA-directed RNA polymerase, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 1195
Score = 234 bits (597), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 209/741 (28%), Positives = 321/741 (43%), Gaps = 129/741 (17%)
Query: 266 IYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQIS 325
+ V++ VTPS Y GP I NRV+R Y D I+NFLR+ FVDE +Y PQ S
Sbjct: 414 VKVHRAQVTPSGTYLYGPNIETKNRVLRQYNDHINNFLRVEFVDETGDPVY---FDPQAS 470
Query: 326 STNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA-----SRPELTA 380
N +ER L+ GI IG F L FS+S R T W A S A
Sbjct: 471 LHN-----IFHERFKGVLKQGIKIGGCHFSFLGFSHSSLRSQTCWFVAPFTTSSGERFDA 525
Query: 381 ADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSNI-----------GKISAELAE 429
I + +G F I + K AAR+GQ+F+ ++ ++ + + G++ ++
Sbjct: 526 QSIIQGLGSFSHIYSPAKLAARIGQTFSETQTSIAIPEDAVFLNEPDVKRNGRVFSDGVG 585
Query: 430 TVAKKCGYAIYT---------PSAFQIRYGGYK-------------VTLRNNMFKYKS-- 465
T + + Y I++ P+ FQIR+ G K + LR +M K+ +
Sbjct: 586 TFSPRLLYKIWSEYALREKVKPTVFQIRFAGAKGMVSLDTRLKGEQLRLRESMVKFSARR 645
Query: 466 ----ESTSLDILANSKYQREGVARLRLD-----NVFERKQREVVARLDAILTDSSKVQEA 516
E I A Y + ++ D F + Q + + RL ++ +SK +
Sbjct: 646 AFNIEVCGSGIRALPFYLNAQIIKILEDLGVPPTGFIKLQSDEIERLLSVGKSASKTSQF 705
Query: 517 LELMSSAENTNV--LKELLN-CGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQA 573
LE S A+ V L E+L+ G+ D +PFL + Q + +L+ RARI +
Sbjct: 706 LEESSIAKEVRVPWLIEILHGLGFHHDQDPFLRSVVQLAIFFKMRDLKYRARIRVPEAVT 765
Query: 574 MMGCLDEKGTLEYGQGL-----------------MVVAKKPCLHPGDMRVLRAVDVP--- 613
+ G +DE G L G+ ++V + P LHPGD++ +AVDVP
Sbjct: 766 LYGIMDETGYLNEGEIFCTFLNEEGGREILVRDQVIVTRAPALHPGDVQYAKAVDVPENS 825
Query: 614 ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKIL 673
L + +CV+F G R + SG D DG++Y V +D +PP + P Y EK+L
Sbjct: 826 PLRSLHNCVIFSQHGFRDLPSMLSGGDLDGDLYNVIYDERLMPPCTYPPANYPKVEEKLL 885
Query: 674 ARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSK 733
R+V +D+ ++F ++ D LG I H A P + C L +L S+ DFSK
Sbjct: 886 DREVVRDDIIDFFVTFMQQDQLGRIATIHQAIADQRPAGTLDRDCLLLAELHSVAVDFSK 945
Query: 734 TGVAAT---IPSRLRVKIYPDFM----------------EKQ--------------DKTW 760
+G+ IP R R YPDFM E+Q + +
Sbjct: 946 SGIPVDLTRIPKRPRY--YPDFMAPSPRIKIADSIEVVEEEQYLAEDEDDDEDERPQRRY 1003
Query: 761 YESQHIVGNLYREVN-----GIAPSTTTIKSFAKEGAMQFYD-TDMEVNGFKEVAMQFDG 814
Y+S I+G +YR +N + + ++ +D E GF+ + DG
Sbjct: 1004 YKSNRILGVMYRNINEQEFLNAVRNASKLRRDDNTLLNAIWDYVASETEGFQWDHLVEDG 1063
Query: 815 FKYRTEYDNKLGNLMDYYGIK------TEAEMLSRCIMEMAKSFDKKRDLEAISFSVRSL 868
K + Y++KL +M Y TE E++ I+ S +RD EA S S+R
Sbjct: 1064 RKVKDIYEDKLREIMQQYSKTPWKSSLTEVEVVMGSILGQ-NSKQSRRDKEA-SQSMREE 1121
Query: 869 RKEARAWFNKKKNDSDSSHKD 889
+E + D DS D
Sbjct: 1122 YQELVNFTISMLTDRDSGGDD 1142
>gi|392861850|gb|EAS37560.2| hypothetical protein CIMG_02715 [Coccidioides immitis RS]
Length = 1195
Score = 234 bits (597), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 205/729 (28%), Positives = 318/729 (43%), Gaps = 132/729 (18%)
Query: 266 IYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQIS 325
+ V++ VTPS Y GP I NRV+R Y D I+NFLR+ FVDE +Y PQ S
Sbjct: 414 VKVHRAQVTPSGTYLYGPNIETKNRVLRQYNDHINNFLRVEFVDETGDPVY---FDPQAS 470
Query: 326 STNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA-----SRPELTA 380
N +ER L+ GI IG F L FS+S R T W A S A
Sbjct: 471 LHN-----IFHERFKGVLKQGIKIGGCHFSFLGFSHSSLRSQTCWFVAPFTTSSGERFDA 525
Query: 381 ADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSNI-----------GKISAELAE 429
I + +G F I + K AAR+GQ+F+ ++ ++ + + G++ ++
Sbjct: 526 QSIIQGLGSFSHIYSPAKLAARIGQTFSETQTSIAIPEDAVFLNEPDMKRNGRVFSDGVG 585
Query: 430 TVAKKCGYAIYT---------PSAFQIRYGGYK-------------VTLRNNMFKYKS-- 465
T + + Y I++ P+ FQIR+ G K + LR +M K+ +
Sbjct: 586 TFSPRLLYKIWSEYALREKVKPTVFQIRFAGAKGMVSLDTRLKGEQLRLRESMVKFSARR 645
Query: 466 ----ESTSLDILANSKYQREGVARLRLD-----NVFERKQREVVARLDAILTDSSKVQEA 516
E I A Y + ++ D F + Q + + RL ++ +SK +
Sbjct: 646 AFNIEVCGSGIRALPFYLNAQIIKILEDLGVPPTGFIKLQSDEIERLLSVGKSASKTSQF 705
Query: 517 LELMSSAENTNV--LKELLN-CGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQA 573
LE S A+ V L E+L+ G+ D +PFL + Q + +L+ RARI +
Sbjct: 706 LEESSIAKEVRVPWLIEILHGLGFHHDQDPFLRSVVQLAIFFKMRDLKYRARIRVPEAVT 765
Query: 574 MMGCLDEKGTLEYGQGL-----------------MVVAKKPCLHPGDMRVLRAVDVP--- 613
+ G +DE G L G+ ++V + P LHPGD++ +AVDVP
Sbjct: 766 LYGIMDETGYLNEGEIFCTFLNEEGGREILVRDQVIVTRAPALHPGDVQYAKAVDVPENS 825
Query: 614 ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKIL 673
L + +CV+F G R + SG D DG++Y V +D +PP + P Y EK+L
Sbjct: 826 PLRSLHNCVIFSQHGFRDLPSMLSGGDLDGDLYNVIYDERLMPPCTYPPANYPKVEEKLL 885
Query: 674 ARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSK 733
R+V +D+ ++F ++ D LG I H A P + C L +L S+ DFSK
Sbjct: 886 DREVVRDDIIDFFVTFMQQDQLGRIATIHQAIADQRPAGTLDQDCLLLAELHSVAVDFSK 945
Query: 734 TGVAAT---IPSRLRVKIYPDFM----------------EKQ--------------DKTW 760
+G+ IP R R YPDFM E+Q + +
Sbjct: 946 SGIPVDLTRIPKRPRY--YPDFMAPSPRIKIADSIEVVEEEQYLAEDEDDDEDERPQRRY 1003
Query: 761 YESQHIVGNLYREVN-----GIAPSTTTIKSFAKEGAMQFYD-TDMEVNGFKEVAMQFDG 814
Y+S I+G +YR +N + + ++ +D E GF+ + DG
Sbjct: 1004 YKSNRILGVMYRNINEQEFLNAVRNASKLRRDDNTLLNAIWDYVASETEGFQWDHLVEDG 1063
Query: 815 FKYRTEYDNKLGNLMDYYGIK------TEAEMLSRCIMEMAKSFDKKRDLEAISFSVRSL 868
K + Y++KL +M Y TE E++ I+ S +RD EA +S+
Sbjct: 1064 RKVKDIYEDKLREIMQQYSKTPWKSSLTEVEVVMGSILGQ-NSKQSRRDKEA----SQSM 1118
Query: 869 RKEARAWFN 877
R+E + N
Sbjct: 1119 REEYQELVN 1127
>gi|119196681|ref|XP_001248944.1| hypothetical protein CIMG_02715 [Coccidioides immitis RS]
Length = 1155
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 200/712 (28%), Positives = 309/712 (43%), Gaps = 128/712 (17%)
Query: 266 IYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQIS 325
+ V++ VTPS Y GP I NRV+R Y D I+NFLR+ FVDE +Y PQ S
Sbjct: 414 VKVHRAQVTPSGTYLYGPNIETKNRVLRQYNDHINNFLRVEFVDETGDPVY---FDPQAS 470
Query: 326 STNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA-----SRPELTA 380
N +ER L+ GI IG F L FS+S R T W A S A
Sbjct: 471 LHN-----IFHERFKGVLKQGIKIGGCHFSFLGFSHSSLRSQTCWFVAPFTTSSGERFDA 525
Query: 381 ADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSNI-----------GKISAELAE 429
I + +G F I + K AAR+GQ+F+ ++ ++ + + G++ ++
Sbjct: 526 QSIIQGLGSFSHIYSPAKLAARIGQTFSETQTSIAIPEDAVFLNEPDMKRNGRVFSDGVG 585
Query: 430 TVAKKCGYAIYT---------PSAFQIRYGGYK-------------VTLRNNMFKYKS-- 465
T + + Y I++ P+ FQIR+ G K + LR +M K+ +
Sbjct: 586 TFSPRLLYKIWSEYALREKVKPTVFQIRFAGAKGMVSLDTRLKGEQLRLRESMVKFSARR 645
Query: 466 ----ESTSLDILANSKYQREGVARLRLD-----NVFERKQREVVARLDAILTDSSKVQEA 516
E I A Y + ++ D F + Q + + RL ++ +SK +
Sbjct: 646 AFNIEVCGSGIRALPFYLNAQIIKILEDLGVPPTGFIKLQSDEIERLLSVGKSASKTSQF 705
Query: 517 LELMSSAENTNV--LKELLN-CGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQA 573
LE S A+ V L E+L+ G+ D +PFL + Q + +L+ RARI +
Sbjct: 706 LEESSIAKEVRVPWLIEILHGLGFHHDQDPFLRSVVQLAIFFKMRDLKYRARIRVPEAVT 765
Query: 574 MMGCLDEKGTLEYGQGL-----------------MVVAKKPCLHPGDMRVLRAVDVP--- 613
+ G +DE G L G+ ++V + P LHPGD++ +AVDVP
Sbjct: 766 LYGIMDETGYLNEGEIFCTFLNEEGGREILVRDQVIVTRAPALHPGDVQYAKAVDVPENS 825
Query: 614 ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKIL 673
L + +CV+F G R + SG D DG++Y V +D +PP + P Y EK+L
Sbjct: 826 PLRSLHNCVIFSQHGFRDLPSMLSGGDLDGDLYNVIYDERLMPPCTYPPANYPKVEEKLL 885
Query: 674 ARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSK 733
R+V +D+ ++F ++ D LG I H A P + C L +L S+ DFSK
Sbjct: 886 DREVVRDDIIDFFVTFMQQDQLGRIATIHQAIADQRPAGTLDQDCLLLAELHSVAVDFSK 945
Query: 734 TGVAAT---IPSRLRVKIYPDFM------------------------------EKQDKTW 760
+G+ IP R R YPDFM E+ + +
Sbjct: 946 SGIPVDLTRIPKRPRY--YPDFMAPSPRIKIADSIEVVEEEQYLAEDEDDDEDERPQRRY 1003
Query: 761 YESQHIVGNLYREVN-----GIAPSTTTIKSFAKEGAMQFYD-TDMEVNGFKEVAMQFDG 814
Y+S I+G +YR +N + + ++ +D E GF+ + DG
Sbjct: 1004 YKSNRILGVMYRNINEQEFLNAVRNASKLRRDDNTLLNAIWDYVASETEGFQWDHLVEDG 1063
Query: 815 FKYRTEYDNKLGNLMDYYGIK------TEAEMLSRCIMEMAKSFDKKRDLEA 860
K + Y++KL +M Y TE E++ I+ S +RD EA
Sbjct: 1064 RKVKDIYEDKLREIMQQYSKTPWKSSLTEVEVVMGSILGQ-NSKQSRRDKEA 1114
>gi|320034943|gb|EFW16885.1| conserved hypothetical protein [Coccidioides posadasii str. Silveira]
Length = 1195
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 209/741 (28%), Positives = 321/741 (43%), Gaps = 129/741 (17%)
Query: 266 IYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQIS 325
+ V++ VTPS Y GP I NRV+R Y D I+NFLR+ FVDE +Y PQ S
Sbjct: 414 VKVHRAQVTPSGTYLYGPNIETKNRVLRQYNDHINNFLRVEFVDETGDPVY---FDPQAS 470
Query: 326 STNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA-----SRPELTA 380
N +ER L+ GI IG F L FS+S R T W A S A
Sbjct: 471 LHN-----IFHERFKGVLKQGIKIGGCHFSFLGFSHSSLRSQTCWFVAPFTTSSGERFDA 525
Query: 381 ADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSNI-----------GKISAELAE 429
I + +G F I + K AAR+GQ+F+ ++ ++ + + G++ ++
Sbjct: 526 QSIIQGLGSFSHIYSPAKLAARIGQTFSETQTSIAIPEDAVFLNEPDMKRNGRVFSDGVG 585
Query: 430 TVAKKCGYAIYT---------PSAFQIRYGGYK-------------VTLRNNMFKYKS-- 465
T + + Y I++ P+ FQIR+ G K + LR +M K+ +
Sbjct: 586 TFSPRLLYKIWSEYALREKVKPTVFQIRFAGAKGMVSLDTRLKGEQLRLRESMVKFSARR 645
Query: 466 ----ESTSLDILANSKYQREGVARLRLD-----NVFERKQREVVARLDAILTDSSKVQEA 516
E I A Y + ++ D F + Q + + RL ++ +SK +
Sbjct: 646 AFNIEVCGSGIRALPFYLNAQIIKILEDLGVPPTGFIKLQSDEIERLLSVGKSASKTSQF 705
Query: 517 LELMSSAENTNV--LKELLN-CGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQA 573
LE S A+ V L E+L+ G+ D +PFL + Q + +L+ RARI +
Sbjct: 706 LEESSIAKEVRVPWLIEILHGLGFHHDQDPFLRSVVQLAIFFKMRDLKYRARIRVPEAVT 765
Query: 574 MMGCLDEKGTLEYGQGL-----------------MVVAKKPCLHPGDMRVLRAVDVP--- 613
+ G +DE G L G+ ++V + P LHPGD++ +AVDVP
Sbjct: 766 LYGIMDETGYLNEGEIFCTFLNEEGGREILVRDQVIVTRAPALHPGDVQYAKAVDVPENS 825
Query: 614 ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKIL 673
L + +CV+F G R + SG D DG++Y V +D +PP + P Y EK+L
Sbjct: 826 PLRSLHNCVIFSQHGFRDLPSMLSGGDLDGDLYNVIYDERLMPPCTYPPANYPKVEEKLL 885
Query: 674 ARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSK 733
R+V +D+ ++F ++ D LG I H A P + C L +L S+ DFSK
Sbjct: 886 DREVLRDDIIDFFVTFMQQDQLGRIATIHQAIADQRPAGTLDRDCLLLAELHSVAVDFSK 945
Query: 734 TGVAAT---IPSRLRVKIYPDFM----------------EKQ--------------DKTW 760
+G+ IP R R YPDFM E+Q + +
Sbjct: 946 SGIPVDLTRIPKRPRY--YPDFMAPSPRIKIADSIEVVEEEQYLAEDEDDDEDERPQRRY 1003
Query: 761 YESQHIVGNLYREVN-----GIAPSTTTIKSFAKEGAMQFYD-TDMEVNGFKEVAMQFDG 814
Y+S I+G +YR +N + + ++ +D E GF+ + DG
Sbjct: 1004 YKSNRILGVMYRNINEQEFLNAVRNASKLRRDDNTLLNAIWDYVASETEGFQWDHLVEDG 1063
Query: 815 FKYRTEYDNKLGNLMDYYGIK------TEAEMLSRCIMEMAKSFDKKRDLEAISFSVRSL 868
K + Y++KL +M Y TE E++ I+ S +RD EA S S+R
Sbjct: 1064 RKVKDIYEDKLREIMQQYSKTPWKSSLTEVEVVMGSILGQ-NSKQSRRDKEA-SQSMREE 1121
Query: 869 RKEARAWFNKKKNDSDSSHKD 889
+E + D DS D
Sbjct: 1122 YQELVNFTISMLTDRDSGGDD 1142
>gi|115437172|ref|NP_001043229.1| Os01g0527600 [Oryza sativa Japonica Group]
gi|113532760|dbj|BAF05143.1| Os01g0527600, partial [Oryza sativa Japonica Group]
Length = 385
Score = 232 bits (591), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 121/298 (40%), Positives = 181/298 (60%), Gaps = 7/298 (2%)
Query: 589 GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFV 648
G +V+AK PCLHPGD+R+L AVDVP LHH+VDC++FP KGERPH NE SGSD DG++YFV
Sbjct: 3 GTVVIAKNPCLHPGDVRILEAVDVPELHHLVDCLVFPQKGERPHANEASGSDLDGDLYFV 62
Query: 649 CWDHDRIPPLQ--FQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYA 706
WD IPP + + P Y+P K L R V+ D+ ++F +++++LG ICNAHVV+A
Sbjct: 63 TWDEKLIPPGKKSWNPMDYSPPEAKQLPRQVSQHDIIDFFLKNMISENLGRICNAHVVHA 122
Query: 707 YSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHI 766
AM +C L +L++ DF KTG A +P L+ K+YPDFM K+D Y+S+ I
Sbjct: 123 DLSEYGAMDEKCIHLAELAATAVDFPKTGKLAIMPPHLKPKVYPDFMGKEDGQSYKSEKI 182
Query: 767 VGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLG 826
+G LYR + + + + YD D+EV G + ++ + YD +L
Sbjct: 183 LGRLYRSIQEASNGDVVSQEVCTPNDLP-YDIDLEVPGASDFLAS--AWQCKCSYDAQLS 239
Query: 827 NLMDYYGIKTEAEMLSRCIMEMAKSFDKKR-DL-EAISFSVRSLRKEARAWFNKKKND 882
L+ Y ++TEAE+++ I + K+ KK+ D+ + + + +LRKE ++ F +D
Sbjct: 240 ALLSQYRVRTEAELVTGHITFLVKNSSKKQGDIKDRLKTAYSALRKEFKSTFESIASD 297
>gi|346325393|gb|EGX94990.1| RNA-directed RNA polymerase (Sad-1) [Cordyceps militaris CM01]
Length = 1102
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 182/679 (26%), Positives = 314/679 (46%), Gaps = 115/679 (16%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
V K+ +TP+ + P + SNRV+R Y + D FLR+ F+ E S +I+
Sbjct: 214 VLKVNITPTCLKLNLPNVESSNRVMRKYNNLHDRFLRVQFLSE--------TESDRIAK- 264
Query: 328 NGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERM 387
+ +++R+L L GI IGD+ +E LAF NSQ RE ++ F L+ DIR+ +
Sbjct: 265 DRYNNDDVWKRLLRALHKGIRIGDRTYEFLAFGNSQLREGSVTFFCPTAYLSCDDIRKWL 324
Query: 388 GDFREIKNVTKYAARLGQSFASSREALHV------------------DSNIGKISAELAE 429
G+F I+N+ K+ AR+GQ F+++RE + +G IS L +
Sbjct: 325 GNFDHIRNIAKFGARIGQCFSTTREVRGIRVPTVRLIDDIETEGECFSDGVGIISGLLGK 384
Query: 430 TVAKKCGYAIY-TPSAFQIRYGGYK---------------VTLRNNMFKYKSESTSLDIL 473
V + + PSAFQ R GG K V +R + K+ +E+ +L+I+
Sbjct: 385 LVVDEMKLDVVGEPSAFQFRMGGAKGVLAVWPREYAKHMEVCVRKSQIKFTTEANTLEIV 444
Query: 474 ANSKYQREGVARLRLDNVFERKQREVVARLDAILTDSSKVQEALELMSSA---------- 523
+K + R + + E A L+ + + +EA+ ++A
Sbjct: 445 KCAKTTTATLNRQTI-IILEHLGVSCGAFLELLNAHIKQYEEAMTDRTAAIDLLTKFVDE 503
Query: 524 -ENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKG 582
+ T ++ ELL ++ +PF+ + + + + +L ++ + RI ++ +MGC+DE G
Sbjct: 504 NQTTVIIAELLKADFQ---DPFVKNLLKLWRSWSLKLMKEKCRIHVEKSAFVMGCVDETG 560
Query: 583 TLE----------------------------------YGQGLMVVAKKPCLHPGDMRVLR 608
TL+ +GL ++ + P LH GD+RV++
Sbjct: 561 TLQGHSKKTEGSNTKRMDDLPQIFLQISNRKYRNKTTIIKGLCLIGRNPSLHAGDIRVVQ 620
Query: 609 AVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYT-P 667
AVD+ L H+ D V+FP+KG+R + SG D DG+ YFV W+ +P + P ++ P
Sbjct: 621 AVDMQCLRHLKDVVVFPSKGDRSLPSMLSGGDLDGDDYFVIWEPTLMPKVWNTPPMHSEP 680
Query: 668 APEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSI 727
+ L RDV + D+ + Y+ ND LG+I +H+ A+++ S C L +L S
Sbjct: 681 VNPQNLDRDVEVNDLRNFVVKYMKNDFLGLIAYSHL--AHADKKGVNSPMCLQLAELHSQ 738
Query: 728 VGDFSKTGVAAT-IPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVN----GIAPSTT 782
D+ KTG+ A ++ + K +P FM+ + +T Y S+ +G LY V PS
Sbjct: 739 AVDYPKTGIPAEWTRAKYQPKEWPHFMQPKSRT-YHSRRALGKLYDRVAHENFDYVPSCE 797
Query: 783 TIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLS 842
F + + TD + +++ +TEYD L+ + + TE E+ S
Sbjct: 798 --DEFDSRVSQGIHLTDDILAIARDI---------KTEYDQAARRLLKQFRLATEFELYS 846
Query: 843 RCIME---MAKSFDKKRDL 858
M + + ++ DL
Sbjct: 847 GWAMSKPAVGSDYKRQEDL 865
>gi|301106324|ref|XP_002902245.1| RNA-dependent RNA Polymerase1 (RDR1) [Phytophthora infestans T30-4]
gi|262098865|gb|EEY56917.1| RNA-dependent RNA Polymerase1 (RDR1) [Phytophthora infestans T30-4]
Length = 2680
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 199/667 (29%), Positives = 309/667 (46%), Gaps = 116/667 (17%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
V K++VTPS++ +C P+ + SNRV R + E NF+ + F D+++ +L
Sbjct: 1101 VYKVIVTPSRIVYCPPDPAPSNRVFRHWGSE--NFMYVYFRDDNMERL------------ 1146
Query: 328 NGERRTRIYERVLSTLRNGIVI----GDKKFETLAFSNSQERENTLWMFASRPELTAADI 383
R I ER+ + L+NGI I G KF L S SQ R N+ +F L +
Sbjct: 1147 -DFRSVTILERIRNVLKNGIEIPHVSGGLKFRFLGCSLSQVR-NSSAIFT---RLDHHAV 1201
Query: 384 RERMGDFREIKNVTKYAARLGQSFASSREALHVDSNI-------------------GKIS 424
R +GD + + KY RLGQ+F+S+++ V ++ G+I
Sbjct: 1202 RLWIGDLSLLTSPAKYLKRLGQAFSSTKDTFEVSRSVLDNPVDDIENDQYVFTDGCGEIG 1261
Query: 425 AELAETVAKKCGYAIYTPSAFQIRYGGYK------------------VTLRNNMFKYKSE 466
AE++ ++ + YTPSAFQ+R GG K V LR +M K+ S
Sbjct: 1262 LVGAESIVRELQLS-YTPSAFQVRLGGAKGVLVVSDLGNPDISREEAVVLRKSMSKFSSN 1320
Query: 467 STSLDILANSKYQREGVARLRL---------DNVFERKQREVVARLDAILTDSSKVQEAL 517
T L+I+A + + R + ++VF Q E ++ L +++ S L
Sbjct: 1321 HTMLEIVACAGKSEAYLTRQSVLILNDLGINEDVFMEMQEEFLSDLRSLIASDSGAYFGL 1380
Query: 518 ELM---SSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAM 574
+ + S +VL L K + +LS + +T + L RARI I G+ +
Sbjct: 1381 KAVLPPSVIWRIDVLVRKLEV--KILVDEYLSSLARTIYHYRLANTVMRARIPIAKGRTL 1438
Query: 575 MGCLDEKGTLEYGQ---------------------GLMV-VAKKPCLHPGDMRVLRA-VD 611
MG D GTLEYG+ G+ V V + PC HPGD+RVLR D
Sbjct: 1439 MGVADFTGTLEYGEVFVQYSDTDEETGNDSYVLLDGIDVAVHRSPCHHPGDIRVLRCRTD 1498
Query: 612 VPA-LHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ--FQPTAY--- 665
VP L + DC++FP+KG RPH +EC+G D DG+++ V WD IP +P A+
Sbjct: 1499 VPPQLRQLKDCIVFPSKGPRPHPDECTGGDLDGDMFVVIWDERLIPSRTQVHEPMAFDED 1558
Query: 666 -----TPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPD 720
+P E+ + + +++ I +D LGI NAH+ S D ++ +
Sbjct: 1559 NGGDTSPRGEE-YHQSTDDAGLIDFYIHSIQDDILGIASNAHLALCDSSNDGSLDDNAKI 1617
Query: 721 LVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPS 780
L ++ S D + I L K YPDFM+ ++K Y S+ I+G +YR I +
Sbjct: 1618 LARICSKQVDSLRAEKDLEIVRNLAPKSYPDFMQNKEKPSYPSKKILGKMYRRCKAIFDT 1677
Query: 781 TTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEM 840
T T KS ++ M D V G+ + Q + YR +Y +L L+ G +TEAE+
Sbjct: 1678 TMT-KSVSR---MPIRDDHFLVAGYTDYVEQAN-LLYR-QYKLRLRALLLMSGAQTEAEL 1731
Query: 841 LSRCIME 847
+ I+E
Sbjct: 1732 ATGMIVE 1738
>gi|302420105|ref|XP_003007883.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
gi|261353534|gb|EEY15962.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
Length = 1465
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 185/657 (28%), Positives = 289/657 (43%), Gaps = 132/657 (20%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
V K++VTP+ +Y P + SNRV+R Y D FLR+ F DE ST ++
Sbjct: 490 VRKVVVTPTTIYLSSPGVEASNRVIRKYQHVSDRFLRVQFTDELTRGRISTRAKMELDHY 549
Query: 328 NGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERM 387
+++RV T+ NGI IGD+ ++ LAF NSQ RE + F L ++R+ M
Sbjct: 550 -------VFKRVYLTMINGIRIGDRHYKFLAFGNSQIRECGAYFFCETVHLKCTEMRQWM 602
Query: 388 GDFREIKNVTKYAARLGQSFASSREALHVDS------------------NIGKISAELAE 429
G+F I V K+AARLGQ F+++RE + + +GKIS+ LA
Sbjct: 603 GNFNHIHIVAKFAARLGQCFSTTREIRSIRAPNIQIIPDIERNGHCFTDGVGKISSFLAS 662
Query: 430 TVAKKCGY-AIYTPSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLDILAN 475
V ++ G + TPSAFQ R GG K V +R + K+K+ L+I+
Sbjct: 663 MVLEEMGLETVETPSAFQFRMGGCKGVLAVWPEAKGMYVHIRKSQEKFKATFNGLEIIRC 722
Query: 476 SKYQREGVARLRL---------DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENT 526
+++ + R + VF + + + + D L +T
Sbjct: 723 ARFSAATLNRQTITILTSLGIKSEVFMDLLQRQLHSYEKAMNDQGAAAVLLGRHIDENHT 782
Query: 527 NV-LKELLNCGY-KPDA-EPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGT 583
++ L++L+N G+ + D EPF+ + Q + ++ LR +ARI + G ++GC+DE T
Sbjct: 783 SLALRDLINWGFMRHDVQEPFVLTILQLWRVWSMKLLRDKARIVVDKGAFVLGCVDETAT 842
Query: 584 LE------YGQ-----------------------------GLMVVAKKPCLHPGDMRVLR 608
L GQ G+ +V + P LHPGD+RV+
Sbjct: 843 LRGHNRASEGQTTSRNVELLPQIFLQIPDPDDRHFFNVIKGVCIVGRNPSLHPGDIRVVE 902
Query: 609 AVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPL-QFQPTAYTP 667
AVDVP L HM + V+FP+ G+ + SG D DG+ +FV WD D IPP+ F+P
Sbjct: 903 AVDVPQLRHMKNVVVFPSTGDVDVPSMLSGGDLDGDDFFVIWDPDLIPPVWNFRPMDNAA 962
Query: 668 APEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSI 727
K+L RDV +D+ SL L KL S
Sbjct: 963 PQTKVLDRDVNTKDL-----------SL------------------------QLAKLHSK 987
Query: 728 VGDFSKTGVAATIPSRLRVKIYPDFM--EKQDKTWYESQHIVGNLYREVNGIAPSTTTIK 785
D+ K+G A + LR + +P FM + + Y S +G +Y + + + K
Sbjct: 988 AVDYVKSGDPAELGRELRARRWPHFMGGRRNKNSIYHSYTALGQIYDRIQDVPFNPLYEK 1047
Query: 786 SFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLS 842
F + +F D V K+ + ++ YD + LM + TE E+ +
Sbjct: 1048 KFDRRILTRFAPIDNAV--LKQAR------RLKSTYDTAMRRLMAQREVSTEFEIWT 1096
>gi|367021614|ref|XP_003660092.1| hypothetical protein MYCTH_2297939 [Myceliophthora thermophila ATCC
42464]
gi|347007359|gb|AEO54847.1| hypothetical protein MYCTH_2297939 [Myceliophthora thermophila ATCC
42464]
Length = 1033
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 172/566 (30%), Positives = 264/566 (46%), Gaps = 98/566 (17%)
Query: 234 YDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVR 293
+DP+ E ++ H + +P + + LI + +VTP+++YF P + SNRVVR
Sbjct: 485 HDPL----ELFKDHGAMTYYPATLHIPDYCALI--RRAIVTPTRMYFSTPTVETSNRVVR 538
Query: 294 SYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKK 353
Y D+FLR+ F DE +L +I + +R +Y RV + GI +G
Sbjct: 539 RYQHIQDHFLRVQFTDE--------LLDGRIRACEVDRDDELYARVCRVMTQGIRMGKWH 590
Query: 354 FETLAFSNSQERENTLWMFASRPE---LTAADIRERMGDFREIKNVTKYAARLGQSFASS 410
++ LAF NSQ RE+ + F PE +T IR+ MG+F I +V K AARLGQ F+++
Sbjct: 591 WKFLAFGNSQIRESAAFFFCE-PEDGSVTCDSIRQWMGNFDHITSVAKLAARLGQCFSTT 649
Query: 411 REALHVDSN--------------------IGKISAELAETVAKKCGYAIYTPSAFQIRYG 450
R LH S+ IGKIS LA VA+ PSA Q R G
Sbjct: 650 R-LLHCISSPRIARIPDVESENGFCFTDGIGKISLPLACLVAEDWKLD-RPPSAVQFRMG 707
Query: 451 GYK-------------VTLRNNMFKYKSESTSLDILANSKYQREGVARLRL--------- 488
G K + +R + K+ +E L+I+ S++ + R +
Sbjct: 708 GCKGVLVQWPNVKGTEIHIRPSQEKFCAEYNGLEIIRCSQFSCATLNRQTILILSCLGVS 767
Query: 489 DNVFERKQREVVARLDAILTDSSKVQEALE-LMSSAENTNVLKELLNCGYKPDAEPFLSM 547
D VF +A DA +TD E L+ + T + +L G+ EPF+
Sbjct: 768 DEVFIDMMASQIANFDAAMTDKDTAVELLDNYVDENLTTTTIASMLRNGFMHTREPFVRT 827
Query: 548 MPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLE------YGQ------------- 588
+ Q + + ++ L+ +AR+ ++ G ++GC+DE GTL GQ
Sbjct: 828 VLQLWRSWSIKALKEKARLVVEQGAFVLGCVDETGTLRGYSRATEGQSNVSRDQLPQIFF 887
Query: 589 ---------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHT 633
GL +V + P LHPGD+RV+ AVDVP L H+ D V+FP +G+R
Sbjct: 888 QVPDRDHRHAYKVVTGLCIVGRNPSLHPGDIRVVEAVDVPQLRHLRDVVVFPLRGDRDVP 947
Query: 634 NECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPE-KILARDVTIEDVEEYFADYIVN 692
+ CSG D DG+ +FV WD +P P AP+ I +R + + +F ++ N
Sbjct: 948 SMCSGGDLDGDDFFVIWDPRLLPAEWGHPPMNYSAPQPPIESRASLAKSLAFFFVLFMKN 1007
Query: 693 DSLGIICNAHVVYAYSEPDKAMSNRC 718
D L +I +AH+ A E + A +C
Sbjct: 1008 DRLPLIAHAHLARADYELEGAKHWKC 1033
>gi|156379597|ref|XP_001631543.1| predicted protein [Nematostella vectensis]
gi|156218585|gb|EDO39480.1| predicted protein [Nematostella vectensis]
Length = 523
Score = 226 bits (576), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 167/536 (31%), Positives = 244/536 (45%), Gaps = 95/536 (17%)
Query: 383 IRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN----------------------I 420
IR MGDF I+ V Y +R+GQ F++S + + + + I
Sbjct: 1 IRRWMGDFSSIRCVGTYVSRMGQCFSTSLDTVGITVDGIECLEKDDIQTEEKSYTFTDGI 60
Query: 421 GKISAELAETVAKKCGYAIYTPSAFQIRYGGYKVTL-------------RNNMFKYKSES 467
G IS++LA V K G + PSAFQIRY G K L R +M K++S
Sbjct: 61 GGISSQLARKVTIKIGKD-FIPSAFQIRYAGCKGVLAVDKSLGEKQLFCRPSMRKFQSSH 119
Query: 468 TSLDILANSK----YQREGVARLRL-----DNVFERKQREVVARLDAILTDSSKVQEALE 518
L++L S+ Y V L D+VF + + L L D + A+
Sbjct: 120 RRLEVLQTSRPQAVYLNHQVIMLLSNLGISDDVFMSLLEKTLDNLGGTLLDE---RLAMR 176
Query: 519 LMSSAENTNV-LKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRAR--IFIQNGQAMM 575
+SSA + ++L + G EPF + + L++L +AR + +++ + MM
Sbjct: 177 QLSSAVKRGISYRDLFDAGVHLTVEPFFRSLNAAVYRDRLMQLLMKARMQLPLESARLMM 236
Query: 576 GCLDEKGTLEYGQ---------------------------GLMVVAKKPCLHPGDMRVLR 608
G +DE G LEYGQ G +VV + PCLHPGD+R L
Sbjct: 237 GVVDETGVLEYGQVFVQYSAASNDPRSDKEFELSDKRVLKGPVVVTRNPCLHPGDVRRLV 296
Query: 609 AVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ---FQPTAY 665
A+D P L H+VDCV+FP G+RPH +E +G D DG++YFVCW IP + + P Y
Sbjct: 297 AIDTPKLRHLVDCVVFPKTGQRPHPSEMAGGDLDGDLYFVCWYKPLIPSQEISLYDPMDY 356
Query: 666 TPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLS 725
P++ ++T D+ +Y DYI D LG+I N+H A S C L +
Sbjct: 357 KAPPKREDRTEITSADMTQYIVDYIRMDILGVIDNSHKALADKLKKGVQSEECLFLAEAH 416
Query: 726 SIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIK 785
S D KTG + K YPDFM K DK Y S+ ++G LYR S + K
Sbjct: 417 SYAVDAPKTGQWPDLNGLKLPKSYPDFMMKTDKPTYRSKKLLGKLYR-------SCRSFK 469
Query: 786 SFAKEGAMQ-----FYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKT 836
A++ A + D ++ V G++ + EY +L ++M YGI T
Sbjct: 470 KLAEDSAPKEITKPCLDPNLLVAGYRRFLDEAKNV--YQEYCLRLDHIMGIYGINT 523
>gi|407917163|gb|EKG10484.1| RNA-dependent RNA polymerase eukaryotic-type [Macrophomina phaseolina
MS6]
Length = 1221
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 190/651 (29%), Positives = 299/651 (45%), Gaps = 102/651 (15%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
++++++TP+ Y GPE +SNRV+R YP+ DNFLR+ FVDE+ + + ++
Sbjct: 429 IHRVIITPAGTYLEGPEPEVSNRVLRKYPEHTDNFLRVQFVDEE-----GDAIRYEPKTS 483
Query: 328 NGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWM---FASRPELTAA-DI 383
GE + R S L I IG F L FS+S R T W F + L AA ++
Sbjct: 484 LGEI---FHNRFKSVLDGEINIGGHSFAFLGFSHSSLRSQTCWFMAPFVQKLSLIAAQEV 540
Query: 384 RERMGDFREIKNVTKYAARLGQSFASSREALHVDSNI-------------------GKIS 424
+ +GDF +I++ K AAR+GQ+F+ + + V+ I GKIS
Sbjct: 541 IKGLGDFSKIRSPAKCAARIGQAFSDTSGTVTVNEEIIKMIDDVRNDRGHIFSDGVGKIS 600
Query: 425 AELAETVAKKCGYAI-YTPSAFQIRYGGYK-------------VTLRNNMFKYKSEST-S 469
+L + V K+ A P+ QIR+GG K + LR +M K+ T +
Sbjct: 601 YKLLKRVWKEYQQARGQRPTCLQIRFGGAKGVVSLDDRLPGEQLVLRPSMVKFYGAGTWN 660
Query: 470 LDIL-ANSK----YQREGVARLRLD-----NVFERKQREVVARLDAILTDSSKVQEALEL 519
++I AN + Y ++ D VF Q +V +L I LE
Sbjct: 661 IEICGANFRPLPMYLNRQFIKILEDLGVPAQVFLDLQSAMVEQLRRITKSPVNAATFLEH 720
Query: 520 MSSAENT---NVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMG 576
+ T ++L+ L G+ + + FLS + + S L +++ R+RI + G + G
Sbjct: 721 ARVGQATRMPHLLRMLDELGFSFNEDEFLSHVVEIAALSQLRDIKHRSRIQVDRGVTLYG 780
Query: 577 CLDEKGTLEYGQ---------------------GLMVVAKKPCLHPGDMRVLRAVDVPA- 614
+DE G L + G ++V + P +HPGD++ RAVDVP
Sbjct: 781 IMDETGFLGEDEIYCVIERIGDNGRPKRTVLSGGEVIVTRSPAMHPGDVQKARAVDVPPD 840
Query: 615 --LHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKI 672
L + + V+F +KG+R ++ SG D DG++Y V +D +P + +QP Y P
Sbjct: 841 SPLQALSNVVVFSSKGQRDLPSQLSGGDLDGDLYNVIFDRRLMPRVTYQPADYKKVPPLD 900
Query: 673 LARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFS 732
+ R VT +D+ ++F ++ D LG I N H+ A P+ + C L +++SI DFS
Sbjct: 901 IGRPVTRQDITDFFVKFMETDQLGRISNIHMQLADRRPNGTLDPDCLKLAEMASIAVDFS 960
Query: 733 KTGVAATIPSRLRVK-IYPDFMEKQDKTWYESQHIV---------GNLYREVNGIAPSTT 782
KTG+ + RV I PDFM + E + V + V + P
Sbjct: 961 KTGIPVDMSQCPRVDMIRPDFMANGPRVIVEKKGAVFQDEDEDDLLDDDDAVGALDPDFK 1020
Query: 783 TIKSFAKEGAM-QFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLG--NLMD 830
T + + E + Q Y E F+E MQ +Y TE + LG NLMD
Sbjct: 1021 TFRYYESERVLGQLYRAIDEKKIFQE--MQ----RYATETKSHLGGLNLMD 1065
>gi|341885460|gb|EGT41395.1| CBN-RRF-3 protein [Caenorhabditis brenneri]
Length = 1736
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 183/687 (26%), Positives = 316/687 (45%), Gaps = 119/687 (17%)
Query: 258 AVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYS 317
A L + V K++VTPS++ PE+ + NR+VR + D LR F D++LG+L
Sbjct: 639 AKPLPKNCVQVAKVIVTPSRILLMAPEVMMVNRIVRRFGP--DYALRCVFRDDNLGRLAI 696
Query: 318 TVLSPQISSTNGERRTRIY-ERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRP 376
S N + + I E + +TL+ G+ + D+K+ L +SNSQ R+ +++A R
Sbjct: 697 R----DFSVNNIDHLSNIVTESIFNTLKYGVQVADRKYSFLGWSNSQMRDQGCYLYAPRV 752
Query: 377 EL-------TAADIRERMGDFREIKNVTKYAARLGQSFASSREALHVD------------ 417
+ T +IR+ MGDFRE +V K +R+GQ F ++ + ++
Sbjct: 753 DPATGRVSGTVEEIRKWMGDFREAVSVPKMMSRMGQCFTQAQPTVRLERRHWIVEPDVEG 812
Query: 418 ---------SNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK--------------- 453
G+IS +LA + + TP+ FQ+R+ G+K
Sbjct: 813 GLSGKYCFSDGCGRISVKLANHITRILELK-ETPACFQVRFKGFKGILVIDPTIDDIIGM 871
Query: 454 --VTLRNN-----------------MFKYKSESTS------LDILANSKYQREGVARLRL 488
V R + + KY S + IL ++ + R+
Sbjct: 872 PKVIFRKSQQKFGEGGGDQQDEYLEVVKYAMPSPVCLNRPFITILDQVSAKQSASSHRRI 931
Query: 489 DN-VFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSM 547
N + +RE+ + + +L ++ +E + + + N K + G++ +P +
Sbjct: 932 TNRIHYYLERELCSLSNMLLNENQAAEELVNRTNLPIDWN--KASKHAGFQLSKDPLIRS 989
Query: 548 MPQTFHASNLLELRTRARIFIQN--GQAMMGCLDEKGTLEYGQ----------------- 588
M + + N++ ++A+IF+ G++M G +DE G L+YGQ
Sbjct: 990 MLFSIYRYNIIHHISKAKIFLPPDLGRSMYGVVDETGLLQYGQVFIQYSQSIRQTSATPI 1049
Query: 589 ---GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEI 645
G +++ K PC PGD+RV AV PAL H+VD V+FP G RPH +E +GSD DG+
Sbjct: 1050 LKTGKVLITKNPCHVPGDVRVFEAVWQPALAHLVDVVVFPRHGPRPHPDEMAGSDLDGDE 1109
Query: 646 YFVCWDHDRIPPLQFQPTAY--TPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHV 703
Y + WD + + + Y + APE+ ++ T +D+ E+F Y+ DS+G + NAH+
Sbjct: 1110 YSIIWDQEMLLDYNEEAMIYPSSTAPEE--DKEPTTDDMVEFFLRYLQQDSIGRMSNAHL 1167
Query: 704 VYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAA-TIPSRLRVKIYPDFMEKQDKTWYE 762
YA + C ++ ++ DF K+GV A + S + ++ PD+M K Y
Sbjct: 1168 TYA--DLHGLFHENCRNIALKCAVAVDFPKSGVPAEPLASFEQCEMTPDYMATGGKPMYY 1225
Query: 763 SQHIVGNLYREVNGIAPSTTTIKSFAKEGAM--QFYDT-----DMEVNGFKEVAMQFDGF 815
S + G L+R+ + ++ + G++ YD D +V F A
Sbjct: 1226 SPRLNGQLHRKARKVE---EVLEEYETRGSIFEGEYDKIICPDDADV-FFGSEAKLVQAM 1281
Query: 816 KYRTEYDNKLGNLMDYYGIKTEAEMLS 842
R EY +++ L+D YGI+ EA ++S
Sbjct: 1282 MIRDEYIDRMQQLLDEYGIEDEASVVS 1308
>gi|440476070|gb|ELQ44707.1| RNA-dependent rna polymerase [Magnaporthe oryzae Y34]
gi|440486893|gb|ELQ66719.1| RNA-dependent rna polymerase [Magnaporthe oryzae P131]
Length = 1338
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 172/650 (26%), Positives = 284/650 (43%), Gaps = 124/650 (19%)
Query: 262 DGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLS 321
+ L ++ +++VTP+++ GPEI NRV+R YP D F+R+ F DE+ + S
Sbjct: 448 NSNLTHIYRVVVTPTRITLHGPEIENKNRVLRKYPKHQDCFVRVQFCDENTQDIR---FS 504
Query: 322 PQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWM----FASRPE 377
P+IS R+Y R L L GI I + + L FS+S R ++ W F +
Sbjct: 505 PKISYD------RVYSRFLDVLNRGIQIAGRVYNFLGFSHSSLRTHSAWFSAPFFDQGSQ 558
Query: 378 LTAADIRERMGDFREIKNVTKYAARLGQSFA----------------------SSREALH 415
T A I + +G+F I+ K AAR+GQ+F+ ++R+
Sbjct: 559 HTHASIIKSLGEFSSIQCPAKCAARIGQAFSETPSVVDLRDHDVEVVTHFPDITNRDGSR 618
Query: 416 VDSN-IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYKVTLRNNMFKYKSESTSLDILA 474
V S+ +GKIS + + + P+ FQ+R+GG K L +M ++ D +
Sbjct: 619 VFSDGVGKISESMMHIIWENIPMKKNAPTCFQVRWGGAKGMLALDMTLKGTKVCFRDSM- 677
Query: 475 NSKYQREGVARLRLDNVFERK-----QREVVARLDAILTDSS--------KVQEALELMS 521
+K++ + V +L + + + R+++ L+ + TD S ++QE + +
Sbjct: 678 -TKFESDDVHQLEICDSGSKPIPLVLNRQMIKILEDMGTDRSWFMRLQSYRLQELRSITA 736
Query: 522 SAENTNVLKELLNCGYKPDAEPFLSM-------------MPQTFHASNLLELRT---RAR 565
SA NT + N G F++ M A L ELR +AR
Sbjct: 737 SAYNTWHFLDAQNVGQAIKLGKFINFADKHGMDYRTDDFMRSVVEAVVLRELRLLKHKAR 796
Query: 566 IFIQNGQAMMGCLDEKGTLEYGQ---------------------GLMVVAKKPCLHPGDM 604
I ++ G+ + G +DE G L G+ +++V + P LHPGD+
Sbjct: 797 IPVKYGKTLFGIIDETGYLREGEVVISFGFSQTGEDQPTPPQDGQIVIVTRSPALHPGDI 856
Query: 605 RVLRAVDVPALH---HMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQ 661
++ + V P H H ++C++F G+R ++ SG D DG+IY V WD D +P F
Sbjct: 857 QIAKQVVPPPSHPLSHHINCIIFSQHGQRDLPSQLSGGDLDGDIYNVIWDGDAMPKETFD 916
Query: 662 PTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDL 721
P Y + + R V D+ ++F D++ D LG+I HV+ A D +S C L
Sbjct: 917 PADYPRVEAQDIGRRVVSADMAQFFIDFMKTDHLGVIATRHVILADQLDDGTLSQECRTL 976
Query: 722 VKLSSIVGDFSKTGVAATIPSRLRV-KIYPDFMEKQDKT--------------------- 759
L S DFSK+G+ A + + R K PDF+ T
Sbjct: 977 AGLHSTAVDFSKSGIPAELKALPRANKFRPDFLSPGPITNYHDKGKITLEEYTISEEAEE 1036
Query: 760 -----------WYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDT 798
+Y S+ ++G LYRE++ I+ F++T
Sbjct: 1037 EEEEGDGPRYGYYRSEKVLGQLYREIDEEKIWNENIRVAVDHNKPSFWET 1086
>gi|268530338|ref|XP_002630295.1| C. briggsae CBR-RRF-3 protein [Caenorhabditis briggsae]
Length = 1766
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 183/684 (26%), Positives = 309/684 (45%), Gaps = 113/684 (16%)
Query: 258 AVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYS 317
A L + V K++V+PS+V PE+ + NRVVR + D LR F D++LG+L
Sbjct: 670 ARPLPKNCVSVAKVIVSPSRVLLMAPEVMMVNRVVRRFGP--DYALRCVFRDDNLGRLAI 727
Query: 318 TVLSPQISSTNGERRTRIY-ERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRP 376
S N + + + E + +TL+NGI + D+ + L +SNSQ R+ +++A R
Sbjct: 728 R----DFSINNIDHMSNVVTEAIYNTLKNGIQVADRHYSFLGWSNSQMRDQGCYLYAPRV 783
Query: 377 EL-------TAADIRERMGDFREIKNVTKYAARLGQSFASSREALHV------------- 416
+ T DIR MGDFRE +V K +R+GQ F ++ + +
Sbjct: 784 DPISGKVSGTVEDIRVWMGDFREAVSVPKMMSRMGQCFTQAQPTVKLARHHWLVEPDMEG 843
Query: 417 --------DSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK--------------- 453
G+IS +LA + +K P+ FQ+R+ G+K
Sbjct: 844 GPGNKFCFSDGCGRISYKLAGQITRKLKLK-EIPACFQVRFKGFKGILVIDPTIDDIINM 902
Query: 454 --VTLRNNMFKY-----KSESTSLDILAN-------------------SKYQREGVARLR 487
V R + K+ + SL+++ SK Q +
Sbjct: 903 PKVIFRKSQQKFGEGGGDQQDESLEVVKYAMPSPVCLNRPFVTILDQVSKKQSAKCHQRI 962
Query: 488 LDNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSM 547
+ V +RE+ + + +L ++ +E + + + N+ + G++ +P +
Sbjct: 963 TNRVHYYLERELSSLSNMLLNENQAAEELVNRTNLPIDWNLASK--RAGFQLSVDPLIRS 1020
Query: 548 MPQTFHASNLLELRTRARIFIQN--GQAMMGCLDEKGTLEYGQ----------------- 588
M + N++ ++A+IF+ G++M G +DE G L+YGQ
Sbjct: 1021 MLFAIYRYNIIHHISKAKIFLPPSLGRSMYGVVDETGLLQYGQVFIQYSPTIRQTSPEPL 1080
Query: 589 ---GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEI 645
G +++ K PC PGD+RV AV PAL H+VD V+FP G RPH +E +GSD DG+
Sbjct: 1081 LKTGKVLITKNPCHVPGDVRVFDAVWQPALAHLVDVVVFPRHGPRPHPDEMAGSDLDGDE 1140
Query: 646 YFVCWDHDRIPPLQFQPTA--YTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHV 703
Y + WD + + L + TA + + + ++ T +D+ E+F Y+ DS+G + NAH+
Sbjct: 1141 YSIIWDQEML--LDYNETAMVFPSSQAQEEDKEPTTDDMVEFFLRYMQQDSIGRMSNAHL 1198
Query: 704 VYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAA-TIPSRLRVKIYPDFMEKQDKTWYE 762
VYA + S C + + ++ DF K+GV A + + + PD+M K Y
Sbjct: 1199 VYA--DLHGLFSENCASIAQKCAVAVDFPKSGVPAEPLTGFEQCDVTPDYMMSGGKPMYY 1256
Query: 763 SQHIVGNLYREVNGIAPSTTTIKS----FAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYR 818
S + G L+R+ + +S F E D +V E + R
Sbjct: 1257 SASLNGQLHRKARKVEEVLEEYESKGSIFEGEYDKMICPDDADVFFGSEPKL-VQTMNIR 1315
Query: 819 TEYDNKLGNLMDYYGIKTEAEMLS 842
EY +++ L+D YGI+ EA ++S
Sbjct: 1316 DEYIDRMQQLLDEYGIEDEASVVS 1339
>gi|389628880|ref|XP_003712093.1| RNA-dependent RNA polymerase [Magnaporthe oryzae 70-15]
gi|351644425|gb|EHA52286.1| RNA-dependent RNA polymerase [Magnaporthe oryzae 70-15]
Length = 1292
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 172/650 (26%), Positives = 284/650 (43%), Gaps = 124/650 (19%)
Query: 262 DGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLS 321
+ L ++ +++VTP+++ GPEI NRV+R YP D F+R+ F DE+ + S
Sbjct: 448 NSNLTHIYRVVVTPTRITLHGPEIENKNRVLRKYPKHQDCFVRVQFCDENTQDIR---FS 504
Query: 322 PQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWM----FASRPE 377
P+IS R+Y R L L GI I + + L FS+S R ++ W F +
Sbjct: 505 PKISYD------RVYSRFLDVLNRGIQIAGRVYNFLGFSHSSLRTHSAWFSAPFFDQGSQ 558
Query: 378 LTAADIRERMGDFREIKNVTKYAARLGQSFA----------------------SSREALH 415
T A I + +G+F I+ K AAR+GQ+F+ ++R+
Sbjct: 559 HTHASIIKSLGEFSSIQCPAKCAARIGQAFSETPSVVDLRDHDVEVVTHFPDITNRDGSR 618
Query: 416 VDSN-IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYKVTLRNNMFKYKSESTSLDILA 474
V S+ +GKIS + + + P+ FQ+R+GG K L +M ++ D +
Sbjct: 619 VFSDGVGKISESMMHIIWENIPMKKNAPTCFQVRWGGAKGMLALDMTLKGTKVCFRDSM- 677
Query: 475 NSKYQREGVARLRLDNVFERK-----QREVVARLDAILTDSS--------KVQEALELMS 521
+K++ + V +L + + + R+++ L+ + TD S ++QE + +
Sbjct: 678 -TKFESDDVHQLEICDSGSKPIPLVLNRQMIKILEDMGTDRSWFMRLQSYRLQELRSITA 736
Query: 522 SAENTNVLKELLNCGYKPDAEPFLSM-------------MPQTFHASNLLELRT---RAR 565
SA NT + N G F++ M A L ELR +AR
Sbjct: 737 SAYNTWHFLDAQNVGQAIKLGKFINFADKHGMDYRTDDFMRSVVEAVVLRELRLLKHKAR 796
Query: 566 IFIQNGQAMMGCLDEKGTLEYGQ---------------------GLMVVAKKPCLHPGDM 604
I ++ G+ + G +DE G L G+ +++V + P LHPGD+
Sbjct: 797 IPVKYGKTLFGIIDETGYLREGEVVISFGFSQTGEDQPTPPQDGQIVIVTRSPALHPGDI 856
Query: 605 RVLRAVDVPALH---HMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQ 661
++ + V P H H ++C++F G+R ++ SG D DG+IY V WD D +P F
Sbjct: 857 QIAKQVVPPPSHPLSHHINCIIFSQHGQRDLPSQLSGGDLDGDIYNVIWDGDAMPKETFD 916
Query: 662 PTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDL 721
P Y + + R V D+ ++F D++ D LG+I HV+ A D +S C L
Sbjct: 917 PADYPRVEAQDIGRRVVSADMAQFFIDFMKTDHLGVIATRHVILADQLDDGTLSQECRTL 976
Query: 722 VKLSSIVGDFSKTGVAATIPSRLRV-KIYPDFMEKQDKT--------------------- 759
L S DFSK+G+ A + + R K PDF+ T
Sbjct: 977 AGLHSTAVDFSKSGIPAELKALPRANKFRPDFLSPGPITNYHDKGKITLEEYTISEEAEE 1036
Query: 760 -----------WYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDT 798
+Y S+ ++G LYRE++ I+ F++T
Sbjct: 1037 EEEEGDGPRYGYYRSEKVLGQLYREIDEEKIWNENIRVAVDHNKPSFWET 1086
>gi|397600982|gb|EJK57779.1| hypothetical protein THAOC_22138 [Thalassiosira oceanica]
Length = 1292
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 171/594 (28%), Positives = 273/594 (45%), Gaps = 115/594 (19%)
Query: 251 GQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDE----IDNFLRLS 306
G P S AL V ++L+TP+++ G +SNR++R + + ++F+RL+
Sbjct: 435 GVVPGSHTPAL---FCVVPRLLLTPTRLVVTGFHFEISNRMIRKFIQDHNFMSESFVRLT 491
Query: 307 FVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERE 366
DE+ KLYS ++ Q+ RI E VL GI I K ++ LA+S+SQ +E
Sbjct: 492 LGDENSDKLYSDDITVQVEE-------RIKEFVLG----GIDIVGKHYKFLAYSSSQLKE 540
Query: 367 NTLWMFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASS---------------- 410
+LW+ + T +RE MGDF K +KYAAR+GQ F+++
Sbjct: 541 QSLWLVSPERGWTVDGMRESMGDFSMCKTPSKYAARIGQCFSTTVSVAEGSGSRNIFSAM 600
Query: 411 ----------------------REALHVDSNIGKISAELAETVAKKCGYAIYTP---SAF 445
E H D +G I E+ + K+ + SA
Sbjct: 601 DKTTDWLRVKDDLEDITSRWNGLEMQHSDG-VGLIRKEVLQNAIKQVPFGPRDKTHISAI 659
Query: 446 QIRYGGYK----------------------VTLRNNMFKYKSESTSLDIL---------A 474
QIR GG K + LR + K+ + SL+++
Sbjct: 660 QIRLGGAKGVLVGWSFDQLNHLKNEIRNFDICLRPSQVKFSAPYMSLEVVNLATRIPYFL 719
Query: 475 NSKYQREGVARLRLDNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNV--LKEL 532
N G D +F Q+E++ L+ +L D+ L +S + + V L +
Sbjct: 720 NRNVVLLGSHLGIQDGIFLCLQKEMIQDLNLLLYDADHALRFLPSLSGPDCSLVSTLMSM 779
Query: 533 LNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYG----- 587
L G KP+ +PFL T A +++ LR +ARIF+++G +MGCLDE G +
Sbjct: 780 LLAGMKPNIDPFLFSCLHTTRAHHMMTLRKKARIFVKDGAVLMGCLDETGLVPENSVFIQ 839
Query: 588 -----------QGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNEC 636
+G ++V K P +HPGDMR+L AV++P L +M D ++F G RP ++
Sbjct: 840 VKHDNGSFKPIEGKVMVTKHPVMHPGDMRMLEAVNIPELKNMKDIIIFSRHGSRPEADKM 899
Query: 637 SGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARD---VTIEDVEEYFADYIVND 693
SGSD DG+++ V WD P Y+P P L ++ + + +F + ND
Sbjct: 900 SGSDLDGDLFAVTWDKRLFLRQSLDPMEYSPPP--TLGQETPPINDSSLLAHFVGHAKND 957
Query: 694 SLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVK 747
+LG I + +A ++ A + C L KL+SI DF K+G++AT+P L++K
Sbjct: 958 NLGRISMLWLDHAVTK-GGAGCHECVRLAKLASIAVDFPKSGISATLPDDLKIK 1010
>gi|392890785|ref|NP_495713.2| Protein RRF-3 [Caenorhabditis elegans]
gi|316979926|emb|CAA88315.2| Protein RRF-3 [Caenorhabditis elegans]
Length = 1765
Score = 221 bits (564), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 184/690 (26%), Positives = 316/690 (45%), Gaps = 125/690 (18%)
Query: 258 AVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYS 317
A L + V K++VTPS++ PE+ + NRVVR + D LR F D++LG+L
Sbjct: 669 AKPLPKNCVSVAKVIVTPSRILLMAPEVMMVNRVVRRFGP--DYALRCVFRDDNLGRLAI 726
Query: 318 TVLSPQISSTNGERRTRIY-ERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRP 376
S N + + I E + TL+NGI + D+ + L +SNSQ R+ +++A R
Sbjct: 727 R----DFSINNIDHMSNIVTEGIYLTLKNGIQVADRVYSFLGWSNSQMRDQGCYLYAPRV 782
Query: 377 EL-------TAADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN---------- 419
T DIR MGDFR+ +V K +R+GQ F ++ + ++ +
Sbjct: 783 NALTGEVTGTVEDIRVWMGDFRDAISVPKMMSRMGQCFTQAQPTVRLERHHWIVEPDIEG 842
Query: 420 -----------IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK--------------- 453
G+IS +LA ++K P+ FQ+R+ G+K
Sbjct: 843 GVENKYCFSDGCGRISIKLATHISKILQLK-EVPACFQVRFKGFKGILVIDPTIDDIINM 901
Query: 454 --VTLRNNMFKYKSESTSL--DILANSKYQREGVARLR------LDNVFERK-------- 495
V R + K+ L + L KY L LD V E++
Sbjct: 902 PKVIFRKSQQKFGEGGGELQDEYLEVVKYAMPSPVCLNRPFITILDQVSEKQSASSHRRI 961
Query: 496 --------QREVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSM 547
+RE+ + + ++ ++ +E + + A + N + G++ +P +
Sbjct: 962 TNRVHYYLERELCSLSNMLINENQAAEELVNRTNLAIDWNAASK--RAGFELSVDPLIRD 1019
Query: 548 MPQTFHASNLLELRTRARIFIQN--GQAMMGCLDEKGTLEYGQ----------------- 588
M + + N++ ++A+IF+ G++M G +DE G L+YGQ
Sbjct: 1020 MLFSIYRYNIIHHISKAKIFLPPSLGRSMYGVVDETGLLQYGQVFIQYSPSIRQTSNRPI 1079
Query: 589 ---GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEI 645
G +++ K PC PGD+RV AV PAL H+VD V+FP G RPH +E +GSD DG+
Sbjct: 1080 LKTGKVLITKNPCHVPGDVRVFDAVWQPALAHLVDVVVFPQHGPRPHPDEMAGSDLDGDE 1139
Query: 646 YFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVY 705
Y + WD + + + + + ++ T +D+ E+F Y+ DS+G + +AH+ Y
Sbjct: 1140 YSIIWDQEMLLDYNEEAMVFPSSSAAEEDKEPTTDDMVEFFLRYLQQDSIGRMSHAHLAY 1199
Query: 706 A-----YSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAA-TIPSRLRVKIYPDFMEKQDKT 759
A + E A++ +C ++ DF K+GV A + S + ++ PD+M K
Sbjct: 1200 ADLHGLFHENCHAIALKC-------AVAVDFPKSGVPAEPLSSFEQCEMTPDYMMSGGKP 1252
Query: 760 WYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAM--QFYDT-----DMEVNGFKEVAMQF 812
Y S + G L+R+ + ++ F G++ + YD D++V E+ +
Sbjct: 1253 MYYSTRLNGQLHRKARKVE---EVLEEFETRGSVFEREYDKLICPEDVDVFFGNEIKL-V 1308
Query: 813 DGFKYRTEYDNKLGNLMDYYGIKTEAEMLS 842
R EY +++ L+D YGI+ EA ++S
Sbjct: 1309 QTLTLRDEYVDRMQQLLDEYGIEDEASVVS 1338
>gi|324500457|gb|ADY40216.1| RNA-dependent RNA polymerase RRF-3 [Ascaris suum]
gi|333440982|gb|AEF32766.1| RdRP3 [Ascaris suum]
Length = 1640
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 197/708 (27%), Positives = 318/708 (44%), Gaps = 136/708 (19%)
Query: 261 LDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVL 320
L + + K++ TP ++ PE+ ++NRVVR + +E LR F D++ +L V+
Sbjct: 558 LPPNCVLIRKVMATPLRLILMPPEVMMTNRVVRHFGEEYA--LRCVFRDDNGQRL---VV 612
Query: 321 SPQISSTNGERRTRIYER-VLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELT 379
+ + ++ I +R V TL GI I + ++ LA+SNSQ R++ +M+++ +
Sbjct: 613 NDFTRGRAVQEQSLIIQRLVYKTLSEGIHIASRHYKFLAWSNSQMRDHGCYMYSATKVID 672
Query: 380 AA----------DIRERMGDFREIKNVTKYAARLGQSFASSR------------------ 411
DIR MGDF KNV K +R+GQ F ++
Sbjct: 673 DVSGKERIYEIEDIRRWMGDFTASKNVPKLMSRMGQCFTQAQPTIVLERKDWRMEEDIVG 732
Query: 412 --------EALHVDSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK---------- 453
E + G+ISA+ A VA K PS FQ+R+ G+K
Sbjct: 733 GLPHPETGELFNFSDGAGRISAKYASLVAAKLDLRP-PPSCFQVRFKGFKGVLCVDPSLD 791
Query: 454 ------VTLRNNMFKYK---SESTSLDILANSKYQREGVAR---LRLDNVFERKQREVVA 501
V R + K++ SE+ L+++ +S ++R + LD V ER+ RE+
Sbjct: 792 LENKENVVFRRSQKKFEEDESEAAELEVVKHSMPSFVCLSRPLIMILDQVSERQNRELHQ 851
Query: 502 RL---------------DAILTDSSKVQEALELMSSAENTNV-LKELLNCGYKPDAEPFL 545
RL +L D EAL SS + ++ ++L + G+ EPF
Sbjct: 852 RLCWRIHCLLEKELNTLAEMLLDEEVAAEAL---SSRLSLSIDFRQLHDSGFTFTNEPFF 908
Query: 546 SMMPQTFHASNLLELRTRARIFIQN--GQAMMGCLDEKGTLEYGQ--------------- 588
+ H N+ + ++ +IF+ G+ M G +D+ G L+YGQ
Sbjct: 909 RSLLVAVHHYNIKQHLSKLKIFLPGSMGRTMYGVIDDTGVLQYGQVFVQYSPSVRTPSKK 968
Query: 589 -----GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDG 643
G ++V K PCL GD+R+ AV +L H+ D ++FP G RPHT+E +GSD DG
Sbjct: 969 VITHVGPVLVTKNPCLVGGDVRMFTAVYQSSLSHLRDVIVFPRYGPRPHTDEMAGSDLDG 1028
Query: 644 EIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDV----TIEDVEEYFADYIVNDSLGIIC 699
+ Y V +D D + + P P +A D T ED+ ++F Y+ DS+G +
Sbjct: 1029 DEYIVIFDKDLFLD-HNEEAMHFPKP---VASDYDTPPTAEDMIDFFLKYLSQDSIGRMS 1084
Query: 700 NAHVVYAYSEPDKAMSNR-------CPDLVKLSSIVGDFSKTG-VAATIPSRLRVKIYPD 751
NAH++ MS+R C + + SI DF K+G A + S + I PD
Sbjct: 1085 NAHLI---------MSDRLGLFHEICDGIARKCSIAVDFPKSGEPAEPLSSFEQSDIVPD 1135
Query: 752 FMEKQDKTWYESQHIVGNLYREVNGI--APSTTTIKSFAKEGAMQFYDTDMEVNGFKEVA 809
FM+K + Y S +VG LYR+V + + F Q YD +
Sbjct: 1136 FMQKSFRPSYRSHRLVGRLYRKVKKVENIVELAQMIPFTDTFDPQLYDESLFDT---HPC 1192
Query: 810 MQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRD 857
+ + R +Y+ K+ LMD YGI EA ++S + + + D ++D
Sbjct: 1193 LVRNSIHLRNQYNAKVQQLMDEYGITDEASVVSGHSVTIRRITDMEKD 1240
>gi|324500541|gb|ADY40252.1| RNA-dependent RNA polymerase EGO-1 [Ascaris suum]
gi|333440978|gb|AEF32764.1| RdRP1 [Ascaris suum]
Length = 1644
Score = 219 bits (557), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 200/734 (27%), Positives = 319/734 (43%), Gaps = 167/734 (22%)
Query: 264 GLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQ 323
G V K+++TP+++ F PE+ + NRV+R++ + + LR+ F D+D +L + P
Sbjct: 541 GYQRVRKVVITPTRMLFVVPELLMGNRVLRNFDKDGNGSLRVQFRDDDSSQLRRNTVGPF 600
Query: 324 ISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADI 383
+ I V +TL GI IG + F L SNSQ R+N + F A I
Sbjct: 601 L----------IQSTVFNTLTRGIHIGSRHFVYLGSSNSQLRDNGCYFFDDGKGGHAQWI 650
Query: 384 RERMGDFREIKNVTKYAARLGQSFASSREALHV-------------------------DS 418
R ++G F + N+ K +R+GQ F +++ V
Sbjct: 651 RTQLGKF-DRGNIPKMMSRMGQCFTQAKQCAVVLKRHKYNKTWDVIGGRDSRGEPYIFSD 709
Query: 419 NIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYKVTLRNNMFKYKSESTSLDILANSKY 478
+G++S E AE +AK A PS FQIR+ G K L S+D L + +
Sbjct: 710 GVGRLSQEFAEKIAKDINLANAVPSCFQIRHRGMKGVL------------SVDPLLDDRK 757
Query: 479 Q-------REG-VARLRLDN---VFERKQ-------------------------REVVAR 502
Q ++G +A R+++ VF Q R +++
Sbjct: 758 QWAIAHGIKDGSMATSRINDLAVVFRPSQDKFKAPRDEAIEIVKYSSPTCVSLNRPMISI 817
Query: 503 LDAI---------LTDSSKVQEAL--ELMSSAE----------NTNVLKELLNC------ 535
LD + +T + ++ E L +LM AE N L L+N
Sbjct: 818 LDQVSSMQGHTVHMTVTERIHELLDMQLMELAEIFLDEDRCRDKLNELPRLMNVDRLSLV 877
Query: 536 -GYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQN--GQAMMGCLDEKGTLEYGQ---- 588
G+ EPF + + L + + +I I + G++M G +DE G L+ GQ
Sbjct: 878 RGFALTQEPFFRSLLRASVRYTLKKQLAKEQILIPSHLGRSMFGVMDETGQLQSGQIFVQ 937
Query: 589 --------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKG 628
G +++ K PC+ GD+R+L AVD+P LHH+VD V+FP G
Sbjct: 938 YTNNVWLKNPPPRAAKTILKGPVLMTKNPCIVAGDVRLLEAVDIPELHHLVDVVVFPQYG 997
Query: 629 ERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKI--LARDVTIEDVEEYF 686
RPH +E +GSD DG+ Y V WD + P +T K + D ++ ++F
Sbjct: 998 PRPHPDEMAGSDLDGDEYSVIWDKKLMFIRNENPLDFTKRMRKYEEVGTDKVDLEMRKFF 1057
Query: 687 ADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRL-- 744
+YI DS+G I NA +V A + S C ++ K S DF KTG A +R+
Sbjct: 1058 VNYIKQDSIGSIANAFLVNA--DLYGITSEICENIAKKHSQAVDFPKTGDAPEPLTRVWT 1115
Query: 745 -----------RVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAM 793
R + +PDFM K + Y S +VG LYR + + T+ S E
Sbjct: 1116 IGKDGSFVPPERSERWPDFMCKNHEPSYISPRLVGQLYRRIR-LVDDVLTLTSALDEVTE 1174
Query: 794 QFYDTDMEVNGFKEVA----MQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMA 849
D ++ G+++ A +Q D Y+ + ++D YGI+ E ++LS CI +
Sbjct: 1175 LELDPMLQYPGWEKYAENARLQLDS------YNAHIRAILDNYGIQDEGQLLSGCI-SVI 1227
Query: 850 KSFDKKRDLEAISF 863
++ RD++ +SF
Sbjct: 1228 RNRISDRDVDDMSF 1241
>gi|115458854|ref|NP_001053027.1| Os04g0465700 [Oryza sativa Japonica Group]
gi|113564598|dbj|BAF14941.1| Os04g0465700, partial [Oryza sativa Japonica Group]
Length = 377
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 123/305 (40%), Positives = 171/305 (56%), Gaps = 9/305 (2%)
Query: 589 GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFV 648
G + + K PCLHPGD+RVL A+ P L MVDC++FP +GERPH NECSG D DG++YF+
Sbjct: 14 GKVAITKNPCLHPGDIRVLEAIYDPDLVGMVDCLVFPQRGERPHPNECSGGDLDGDLYFI 73
Query: 649 CWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYS 708
WD IP P YT +I+ VT+E+++++F DY++NDSLG I AH+++A
Sbjct: 74 TWDDKLIPEKVDTPMDYTATRPRIMDHVVTLEEIQKHFVDYMINDSLGAISTAHLIHADR 133
Query: 709 EPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVG 768
P KA S C L L S+ DF+KTG A +P LR + YPDFME+ +K Y S ++G
Sbjct: 134 SPLKARSPECLQLATLHSMAVDFAKTGAPAEMPRTLRPREYPDFMERWEKPMYISNGVLG 193
Query: 769 NLYREVNGIAPSTTTIKSFAKEGAM--QFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLG 826
LYR G + + + A YD D+EV G E +Y Y+ KL
Sbjct: 194 KLYRSAMGHMEKSGDSGALSSSSAQPSPTYDPDLEVPGSDEFLQA--AEEYYELYEEKLT 251
Query: 827 NLMDYYGIKTEAEMLSRCIME--MAKSFDKKRDLEA---ISFSVRSLRKEARAWFNKKKN 881
LM+YY + E E+L+ I + D KR E I +V +L +EAR W +
Sbjct: 252 TLMNYYRAELEDEILTGNIRNKMLYLKRDNKRYFEMKDRIVAAVDALHREARGWLLSSRK 311
Query: 882 DSDSS 886
+ D+S
Sbjct: 312 EEDAS 316
>gi|403346586|gb|EJY72692.1| Rna-dependent RNA polymerase [Oxytricha trifallax]
Length = 1470
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 175/643 (27%), Positives = 288/643 (44%), Gaps = 141/643 (21%)
Query: 270 KILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNG 329
++ +TP+ Y+ +NRV+R Y D + F+R+SFV+E L K Y S Q++ G
Sbjct: 561 RLFITPTLDYYQPAYEDETNRVIRQYRDHLSRFVRVSFVNEYLEKGY--YFSDQMNWLLG 618
Query: 330 ERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASR--PE------LTAA 381
+ L NGI +G+ + L++SNSQ + ++ WM P L
Sbjct: 619 --------YLHHVLVNGIQLGNYVLKFLSYSNSQIKNHSCWMLVESLVPNKDFDFPLNEN 670
Query: 382 DIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN-------------------IGK 422
I MGDF + KN+ K AR GQ F++++ L +D + G
Sbjct: 671 IIMRSMGDFSQEKNMLKRYARRGQCFSTTKFILQLDKSEVTYNLPDVKRNGFIFTDGCGY 730
Query: 423 ISAELAETVAKKCGYAIYTPSAFQIRYGGYK-------------VTLRNNMFKYKSESTS 469
IS ELA+ +A++ ++ SAFQIR+GG K + LR++ K++S
Sbjct: 731 ISPELAQLIAEQ--FSFKRSSAFQIRFGGTKGVLMLNPRLEGRQIQLRDSQIKFQSNDLG 788
Query: 470 LDILANSKYQREGVARLRL---------DNVF---ERKQRE---VVARLDAILTDSSKVQ 514
L+++ Y + + R + ++VF +RK +E V + ++ +SK
Sbjct: 789 LNVVRCGTYSQGFLNRQIIILMNCLGVPESVFLELQRKAKEYAQVQEIYNNLIKKTSKAI 848
Query: 515 EALELMSSAENT-------------------NVLKELLNCGYKPDAEPFLSMMPQTFHAS 555
+A +L + + LK L CGY +P S + T S
Sbjct: 849 KAFKLSQNKSKSLQQITKLINLSLGPSKWFEQSLKTALLCGYNIPNDPIFSSILYTMQLS 908
Query: 556 NLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQGLM------------------------ 591
+ + L+ +ARI I + ++G +DE G LE + +
Sbjct: 909 SFMNLKKKARIIIPDSCVLLGIVDEFGILEEDEVFIQVKQDNYSLKKKPWLWDINLNNQE 968
Query: 592 ---------------VVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNEC 636
+V + PC HPGD+R+L+AV+ P L H+ + V+F +KGERP N+
Sbjct: 969 ELEKDSKPLQICQDVIVTRNPCTHPGDIRLLKAVNKPELSHLFNVVVFSSKGERPQCNKM 1028
Query: 637 SGSDQDGEIYFVCWD-----HDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIV 691
+G D DG++YFVCWD H + +Q +P Y P I + + E + +YF Y+
Sbjct: 1029 AGGDLDGDVYFVCWDSLILSHIKKENIQ-EPATYV-KPTLISEQPIDSEHIADYFIFYLQ 1086
Query: 692 NDSLGIICNAHVVYAYS-EPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPS----RLRV 746
D LG + N H+ D + C +L L SI DF+K G + + + +
Sbjct: 1087 RDVLGKLANMHLALCDQIGVDGPLKEECQELSALQSIAVDFAKHGESVDKKNFEHLQKML 1146
Query: 747 KIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAK 789
+PDF EK ++ S+ ++G LYR++N + +K F K
Sbjct: 1147 DNWPDFFEKSNQKMRVSEGVLGMLYRDIN----NDNALKDFMK 1185
>gi|409039622|gb|EKM49158.1| hypothetical protein PHACADRAFT_201955 [Phanerochaete carnosa
HHB-10118-sp]
Length = 908
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 179/649 (27%), Positives = 288/649 (44%), Gaps = 79/649 (12%)
Query: 265 LIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQI 324
L V + LVTP++ P SN ++R + +D FLR+ FVD+D + V +
Sbjct: 163 LTAVRRCLVTPTRCVLNPPTWETSNEMLRDHEHYVDRFLRVQFVDDDGD--FPVVGETLV 220
Query: 325 SSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIR 384
+ R ++ RV L +G+VI + + FS SQ +E WM A T + +
Sbjct: 221 IDDEMQGREGVFARVRRALSDGLVIAGRHYVFATFSESQAKERGCWMIAEDGPFTVSAVL 280
Query: 385 ERMGDFREIKNVTKYAARLGQSFASS-----------REALHVDSNIGKISAELAETVAK 433
+MGD + + + K+AAR S R + +G S LA+ AK
Sbjct: 281 AKMGDLSQERIIAKHAARQRGSMPKKITINRALDDIKRNSYVFTDGVGHFSHSLAQACAK 340
Query: 434 KCGYAIYTPSAFQIRYGGYK---------------VTLRNNMFKYKS--ESTSLDILANS 476
GY + SA QIR GG K V LR +M K + +L+I+ +
Sbjct: 341 TLGYRLIPVSAAQIRIGGAKGVLAVVQDETLGENEVRLRPSMIKLQGVKPEPTLNIIKVA 400
Query: 477 KYQREGVARLRLDNVFERKQREVVA-RLDAILTDSSKVQEALE-----LMSSAENTNVLK 530
Y + A L + + R V + L I T + + LE + ++ T L
Sbjct: 401 TYSK---ATLNRQAILLMEDRGVSSDTLFDIFTQEKRRIQGLESGFDPMRLASVTTFPLA 457
Query: 531 ELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ-- 588
L K +P + + L +L+ +A I + +MG DE +L+ G+
Sbjct: 458 RALRHDIK---DPVVQNVTSLVKCRLLCDLKWKAWIELSESAYLMGIADETDSLQEGEIF 514
Query: 589 --------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTN 634
+ + PCLHPGD+R++ AVD P L H+ + ++F +G R N
Sbjct: 515 CQIHPSGSDPQVIEARCTIYRNPCLHPGDVRLVTAVDCPKLRHLRNVIVFSTRGCRDLPN 574
Query: 635 ECSGSDQDGEIYFVCWDHDRIPPL--QFQPTAYTPAPEKILARDVTIEDVEEYFADYIVN 692
+G D DG+ Y + WD + P +++P YTP P VTIE +++F D + N
Sbjct: 575 MLAGGDLDGDCYSLIWDPRLLIPEGGEYEPMDYTPPPAVRSEYPVTIEQTKQHFLDTMKN 634
Query: 693 DSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDF 752
D LG +CNAH+ A ++ +C +L L+S DFSKTGVA R++ YPDF
Sbjct: 635 DVLGRVCNAHM--ALADLHGPSDFQCRELASLASQAVDFSKTGVAVQQSEIPRLEEYPDF 692
Query: 753 M----------EKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEV 802
M +KQ+ Y S+ ++G ++RE++ P ++ G + + E
Sbjct: 693 MGKEYKSIRIFKKQEIRSYSSEKVLGRMFREID---PEPIFEEAVELAGDPRLLEAGEE- 748
Query: 803 NGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKS 851
GF+E + K R E++ L L+ Y I E E ++ ++ K+
Sbjct: 749 TGFREYLQEAAMHKARYEFE--LTGLLRRYNI-NETECVAGLLLRSPKT 794
>gi|151370755|gb|ABS11001.1| RNA-dependent RNA polymerase 1 [Nicotiana clevelandii]
Length = 243
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 130/245 (53%), Positives = 156/245 (63%), Gaps = 45/245 (18%)
Query: 316 YSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASR 375
+ST L P+ S+ NG R T IY R+LSTLRNG VIGDK+FE LAFS+SQ R+N++WMFASR
Sbjct: 1 HSTDLLPRASTGNGIR-TDIYLRILSTLRNGFVIGDKRFEFLAFSSSQLRDNSVWMFASR 59
Query: 376 PELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHV------------------- 416
P LTA DIR+ MG+F++I+NV KYAARLGQSF SSRE L V
Sbjct: 60 PGLTANDIRKWMGEFQQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVVCSLHGTN 119
Query: 417 ---DSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGY------------KVTLRNNMF 461
IGKISA+ A VA KCG YTP +FQIRYGGY K++LRN+M
Sbjct: 120 YIFSDGIGKISADFARRVAIKCGLQ-YTPFSFQIRYGGYKGVVAVDPYSSMKLSLRNSML 178
Query: 462 KYKSESTSLDILANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSK 512
KY+S + LD+L SKYQ R+ V L D+VFE+KQ E V +LDAIL DS K
Sbjct: 179 KYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVFEQKQNEAVDQLDAILHDSLK 238
Query: 513 VQEAL 517
QEAL
Sbjct: 239 AQEAL 243
>gi|111610628|gb|ABH11712.1| RNA-dependent RNA polymerase [Tetrahymena thermophila]
Length = 1434
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 175/639 (27%), Positives = 283/639 (44%), Gaps = 144/639 (22%)
Query: 262 DGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLS 321
D +I ++ +TPS + + E+ LSNRV+R + D D+F+R +F D+ L
Sbjct: 541 DVKVIATRRVSITPSGLIYNLKELELSNRVLRIFQDSTDSFIRGTFQDDSLE-------- 592
Query: 322 PQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAA 381
++ + + +R + + L + + + + +F +S SQ R ++ W F L
Sbjct: 593 ---NAKHMKYVSRYFRQKLKSFK----VLNWEFINFGWSASQLRNSSSWFFHETEVLKKQ 645
Query: 382 DIRERMGDFREIKNVTKYAARLGQSFASSREAL--------------------HVDSN-- 419
D+ R+GDF I K +AR+GQ F+SS + VD+N
Sbjct: 646 DVITRIGDFSGINPPAKKSARIGQCFSSSTPYILKERPNIEFIDDITTPSAVQEVDANGN 705
Query: 420 --------------IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK------------ 453
IG IS +L ++ + A Q+RYGG K
Sbjct: 706 ICYFRQKKKVFTDGIGTISQDLIRKISDHLN--AFFMCAIQVRYGGAKGVLTIDYKSDKK 763
Query: 454 --VTLRNNMFKYK----SESTSLDILANSKYQ-----REGVARLR---LDN-VFERKQRE 498
+ LR +M KYK + +DIL +KY+ R+ + LR ++N F + Q+E
Sbjct: 764 NTIQLRESMIKYKITDEQDELIIDILDRNKYRFGYLNRQVIILLRSLGIENEQFIQAQQE 823
Query: 499 VVARLDAILTDSSKVQEALELMSSAENT------NVLKELLNCGYKPDAEPFLSMMPQTF 552
+ L+ + + S + T ++L+ + + F + T
Sbjct: 824 YIEELNKSALKDASIFTLFNTDYSKDGTRLFPITHLLRSMQTSRIDMAQDIFCKGVIHTL 883
Query: 553 HASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ-----------------GLMVVAK 595
LR ++ IF++ +MG +DE LE + G ++V K
Sbjct: 884 KKRGFYILRKKSNIFLKKSARLMGVIDEYNVLEQDEVFAYISQDSEKSFFQVEGDVIVVK 943
Query: 596 KPCLHPGDMRVLRAVDVPALHH------------MVDCVLFPAKGERPHTNECSGSDQDG 643
PCLHPGD+R L+AV + + + + ++FP KG+ P T++ +GSD DG
Sbjct: 944 NPCLHPGDIRKLKAVTLETISQRLGEGKINPFKKLRNILIFPQKGKEPITSQIAGSDLDG 1003
Query: 644 EIYFVCWDHDRIPPLQFQPTAY-------------------------TPAPEKILARDVT 678
+ YF+CWD IP Q +P Y T K R+V
Sbjct: 1004 DCYFICWDQRFIPLEQKEPFNYDEDDNSQKKQISQEQYDIEISKKPNTQFKTKNPVREV- 1062
Query: 679 IEDVEE---YFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTG 735
I+D E+ +F D+I N++LG I N+H+V+A P A +C L L + D++KTG
Sbjct: 1063 IDDNEQMLDFFIDFINNENLGKIDNSHLVFADKSPLYAEDPKCLKLASLHAQAVDYAKTG 1122
Query: 736 VAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREV 774
++ +P L +K YPDFMEK DK Y+SQ I+G LYR+V
Sbjct: 1123 ISPQLPKNLAIKEYPDFMEKDDKPSYQSQSILGILYRQV 1161
>gi|118386404|ref|XP_001026321.1| RNA dependent RNA polymerase family protein [Tetrahymena thermophila]
gi|89308088|gb|EAS06076.1| RNA dependent RNA polymerase family protein [Tetrahymena thermophila
SB210]
Length = 1439
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 175/639 (27%), Positives = 283/639 (44%), Gaps = 144/639 (22%)
Query: 262 DGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLS 321
D +I ++ +TPS + + E+ LSNRV+R + D D+F+R +F D+ L
Sbjct: 546 DVKVIATRRVSITPSGLIYNLKELELSNRVLRIFQDSTDSFIRGTFQDDSLE-------- 597
Query: 322 PQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAA 381
++ + + +R + + L + + + + +F +S SQ R ++ W F L
Sbjct: 598 ---NAKHMKYVSRYFRQKLKSFK----VLNWEFINFGWSASQLRNSSSWFFHETEVLKKQ 650
Query: 382 DIRERMGDFREIKNVTKYAARLGQSFASSREAL--------------------HVDSN-- 419
D+ R+GDF I K +AR+GQ F+SS + VD+N
Sbjct: 651 DVITRIGDFSGINPPAKKSARIGQCFSSSTPYILKERPNIEFIDDITTPSAVQEVDANGN 710
Query: 420 --------------IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK------------ 453
IG IS +L ++ + A Q+RYGG K
Sbjct: 711 ICYFRQKKKVFTDGIGTISQDLIRKISDHLN--AFFMCAIQVRYGGAKGVLTIDYKSDKK 768
Query: 454 --VTLRNNMFKYK----SESTSLDILANSKYQ-----REGVARLR---LDN-VFERKQRE 498
+ LR +M KYK + +DIL +KY+ R+ + LR ++N F + Q+E
Sbjct: 769 NTIQLRESMIKYKITDEQDELIIDILDRNKYRFGYLNRQVIILLRSLGIENEQFIQAQQE 828
Query: 499 VVARLDAILTDSSKVQEALELMSSAENT------NVLKELLNCGYKPDAEPFLSMMPQTF 552
+ L+ + + S + T ++L+ + + F + T
Sbjct: 829 YIEELNKSALKDASIFTLFNTDYSKDGTRLFPITHLLRSMQTSRIDMAQDIFCKGVIHTL 888
Query: 553 HASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ-----------------GLMVVAK 595
LR ++ IF++ +MG +DE LE + G ++V K
Sbjct: 889 KKRGFYILRKKSNIFLKKSARLMGVIDEYNVLEQDEVFAYISQDSEKSFFQVEGDVIVVK 948
Query: 596 KPCLHPGDMRVLRAVDVPALHH------------MVDCVLFPAKGERPHTNECSGSDQDG 643
PCLHPGD+R L+AV + + + + ++FP KG+ P T++ +GSD DG
Sbjct: 949 NPCLHPGDIRKLKAVTLETISQRLGEGKINPFKKLRNILIFPQKGKEPITSQIAGSDLDG 1008
Query: 644 EIYFVCWDHDRIPPLQFQPTAY-------------------------TPAPEKILARDVT 678
+ YF+CWD IP Q +P Y T K R+V
Sbjct: 1009 DCYFICWDQRFIPLEQKEPFNYDEDDNSQKKQISQEQYDIEISKKPNTQFKTKNPVREV- 1067
Query: 679 IEDVEE---YFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTG 735
I+D E+ +F D+I N++LG I N+H+V+A P A +C L L + D++KTG
Sbjct: 1068 IDDNEQMLDFFIDFINNENLGKIDNSHLVFADKSPLYAEDPKCLKLASLHAQAVDYAKTG 1127
Query: 736 VAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREV 774
++ +P L +K YPDFMEK DK Y+SQ I+G LYR+V
Sbjct: 1128 ISPQLPKNLAIKEYPDFMEKDDKPSYQSQSILGILYRQV 1166
>gi|339242799|ref|XP_003377325.1| RNA dependent RNA polymerase family protein [Trichinella spiralis]
gi|316973886|gb|EFV57430.1| RNA dependent RNA polymerase family protein [Trichinella spiralis]
Length = 1417
Score = 216 bits (549), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 189/700 (27%), Positives = 328/700 (46%), Gaps = 104/700 (14%)
Query: 240 LREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEI 299
R+ Y K S S + L + V K+++TP++V P+ +SNR++R + ++
Sbjct: 370 FRQVYDKQCSLTDNDYSIELDLAAPYVSVRKVVITPTRVLLSVPDKMMSNRILRQFGSDL 429
Query: 300 DNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAF 359
LR+ F DE ++ ++ S T + + V + + G+ IG + ++ L +
Sbjct: 430 A--LRVIFRDEGGTRIPASKFS----------LTSLKQIVTTVMMKGLAIGPRLYQFLGW 477
Query: 360 SNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFA----------- 408
SNSQ R++ + +AS ++ +IR MGDF I++V K +R+GQ F
Sbjct: 478 SNSQLRDHGCYFYASTEQVNVEEIRRWMGDFSSIRSVPKLMSRMGQCFTQAFAITAIPFN 537
Query: 409 -------------SSREALHVDSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK-- 453
SS IG++S +LAE VA++ PSAFQIRY G+K
Sbjct: 538 PDSKEVLIETDIQSSDSKFCFSDGIGRMSTKLAEEVAERLELWP-VPSAFQIRYAGFKGM 596
Query: 454 ------------VTLRNNMFKYKSEST-SLDILANSKYQREGVAR---LRLDNV-FE--- 493
+ R +M K+ +E +L+I+ +S+ + R + LD V F+
Sbjct: 597 LCVDPRLDGDVKMVFRQSMHKFHTEGAHTLEIVKHSQPCEVNLNRPLIMILDQVAFKEGV 656
Query: 494 ----RKQREVVARLDAILTDSSKV----QEALELMSSAENTNV-LKELLNCGYKPDAEPF 544
R Q ++ LD + + S++ +A ++S+ ++ + ++L + G++ EPF
Sbjct: 657 PVNGRVQNRIMQLLDQQICELSQMLLFEDQAKSVLSATMHSEMNFEKLADAGFRFTEEPF 716
Query: 545 LSMMPQTFHASNLLELRTRARIFIQN--GQAMMGCLDEKGTLEYGQ-------------- 588
M + + E R +I I G+ M G +DE G L GQ
Sbjct: 717 FRNMLLACYKFKVKEKLFRMKIEIDPSLGRTMYGVMDELGLLHPGQVFIQCSANILRPGE 776
Query: 589 ------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQD 642
G ++V K P + PGD+R+L AVD+ H++ D ++FP G RP T++ +GSD D
Sbjct: 777 DKRVITGKVMVTKSPSVVPGDVRILTAVDLEIYHYLNDVIVFPKIGYRPVTDQMAGSDLD 836
Query: 643 GEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAH 702
G+ Y V WD + + + Y + D+T + + ++F YI +DS+G I AH
Sbjct: 837 GDEYAVIWDEELMFCNNYPAMLYEKVISSEIDGDITSDKMVDFFLHYICSDSIGRIAIAH 896
Query: 703 VVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKI-YPDFMEKQDKTWY 761
+V + S + C + + S+ DF K+GV + + YPD++ K + Y
Sbjct: 897 LVASDSYGIFDDVSNC--IARKHSMAVDFPKSGVTPPKLENDEIPLKYPDYIPKCYNSLY 954
Query: 762 ESQHIVGNLYREV---NGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYR 818
S+ ++G+LYR+V N IA + K G + E F+E A
Sbjct: 955 RSKWLLGSLYRKVYMLNSIAELSLARK--VTTGKSDPHLKIAEAKNFEEKARAI-----F 1007
Query: 819 TEYDNKLGNLMDYYGIKTEAEMLSRCIMEM-AKSFDKKRD 857
Y ++L +L+D YGI+ E ++++ I +M ++ D +RD
Sbjct: 1008 QRYKSELHSLLDEYGIENEFQLITGKITKMHSRLSDGERD 1047
>gi|241633126|ref|XP_002410398.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
gi|215503415|gb|EEC12909.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
Length = 529
Score = 215 bits (547), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 171/540 (31%), Positives = 251/540 (46%), Gaps = 98/540 (18%)
Query: 383 IRERMGDFREIKNVTKYAARLGQSFASSREALHV-------------------------- 416
IR MGDF I +V K AR+GQ F+S+ E++ V
Sbjct: 1 IRRWMGDFSNIPSVAKKMARMGQCFSSTEESVKVPLDGKAVEDRPDIVGGKHPRSGRPFI 60
Query: 417 -DSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK-------------VTLRNNMFK 462
IG IS L E V KK A PSA QIRY GYK + LR +M K
Sbjct: 61 FSDGIGMISQPLLEKVCKKLEMA-QIPSAIQIRYAGYKGMLCVNPLLPGDKLVLRESMRK 119
Query: 463 YK-SESTSLDILANSK-----YQREGVARLRLDNVFER-----KQREVVARLDAILTDSS 511
+ S S SL+++ S R + L V R +Q+ V+ DA++ +S+
Sbjct: 120 FTCSSSDSLEVIKVSAPRPVCLNRPLITILEQLGVPSRVFLCLQQKMVLMFADALVCEST 179
Query: 512 KVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFI--Q 569
+Q +S A L+ C + PF+ + T + S + L T++RI +
Sbjct: 180 ALQVLCTYLSGALPFRRLRMHGLCLTR---NPFVRSLLYTVYKSTMDGLHTKSRIAVPLN 236
Query: 570 NGQAMMGCLDEKGTLEYGQ----------------------------GLMVVAKKPCLHP 601
G+ M+G LDE TL+YGQ G ++V K PCLHP
Sbjct: 237 KGRNMLGVLDETDTLKYGQVFVQYTALGPDTEGQDDGLPKTRIIFCTGAVLVTKCPCLHP 296
Query: 602 GDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRI-PPLQF 660
GD+R AVDVPALHH+ DCV+FPA+G RPH NE +GSD DG+ Y V W D + P
Sbjct: 297 GDVRKFTAVDVPALHHVKDCVVFPARGPRPHPNEMAGSDLDGDEYVVIWKKDLLFPGPNR 356
Query: 661 QPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPD 720
+ ++ A +E + ++ +YI ND++GI+ NAH+ +A S D S +C
Sbjct: 357 KAMVFSDHSAPCDANKSLLEGMIQFVCNYIKNDNVGIMSNAHLAWADSLEDGIFSKQCLQ 416
Query: 721 LVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEK-QDKTWYESQHIVGNLYREVNGI-A 778
+ + S DF+KTG + + + YPDFMEK K Y S+ ++G+LYR + A
Sbjct: 417 IARKISTCLDFAKTGETSYLNKDEKPIQYPDFMEKGSSKDTYRSKRVLGHLYRLHRSLEA 476
Query: 779 PSTTTIKSFAKEGAMQFYDTD---MEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIK 835
T ++ ++G D D + G++E A + R Y +++ + YGIK
Sbjct: 477 VVGTDFQTCVEDG-----DADCSLFALPGWEEYAAAAESV--RANYASQMARIRRQYGIK 529
>gi|308510538|ref|XP_003117452.1| CRE-RRF-3 protein [Caenorhabditis remanei]
gi|308242366|gb|EFO86318.1| CRE-RRF-3 protein [Caenorhabditis remanei]
Length = 1779
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 182/701 (25%), Positives = 311/701 (44%), Gaps = 132/701 (18%)
Query: 258 AVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYS 317
A L + V K++V+PS+V PE+ + NR+VR + D LR F D++LG+L
Sbjct: 668 AKPLPKNCVSVAKVIVSPSRVLLMAPEVMMVNRIVRRFGP--DYALRCVFRDDNLGRLAI 725
Query: 318 TVLSPQISSTNGERRTRIY-ERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRP 376
S N + + + E + +TL++GI I D+ + L +SNSQ R+ +++A R
Sbjct: 726 R----DFSVNNIDHMSNVVTEAIYNTLKSGIKIADRVYSFLGWSNSQMRDQGCYLYAPRV 781
Query: 377 EL-------TAADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSNI--------- 420
+ T DIR MGDFR+ +V K +R+GQ F ++ + V +
Sbjct: 782 DPITGAVTGTVEDIRIWMGDFRDAVSVPKMMSRMGQCFTQAQPTVRVSPILFQLNFLFQV 841
Query: 421 ---------------------------GKISAELAETVAKKCGYAIYTPSAFQIRYGGYK 453
G+IS +LA ++K P+ FQ+R+ G+K
Sbjct: 842 KLQRHHWIVEPDMEGGPDNKFCFSDGCGRISYKLAGHISKILDLKA-IPACFQVRFKGFK 900
Query: 454 -----------------VTLRNNMFKYKSESTSL--DILANSKYQREGVARLR------L 488
V R + K+ L + L KY L L
Sbjct: 901 GILVIDPTIDDIMNMPKVIFRKSQQKFGEGGGDLQDEYLEVVKYAMPSPVCLNRPFITIL 960
Query: 489 DNVFERK----------------QREVVARLDAILTDSSKVQEALELMSSAENTNVLKEL 532
D V ++ +RE+ + + +L ++ +E + + + N+ +
Sbjct: 961 DQVSAKQSTASHRRITKRVHYYLERELCSLSNMLLNENQAAEELVNRTNLPIDWNLASK- 1019
Query: 533 LNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQN--GQAMMGCLDEKGTLEYGQ-- 588
G++ +P + M + N++ ++A+IF+ G++M G +DE G L+YGQ
Sbjct: 1020 -RAGFQLSTDPLVRSMLFAIYRYNIIHHISKAKIFLPPNLGRSMYGVVDETGLLQYGQVF 1078
Query: 589 ------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGER 630
G +++ K PC PGD+RV AV PAL H+VD V+FP G R
Sbjct: 1079 IQYSPTIRQTSDTPILKTGKVLITKNPCHVPGDVRVFEAVWQPALAHLVDVVVFPRHGPR 1138
Query: 631 PHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTA--YTPAPEKILARDVTIEDVEEYFAD 688
PH +E +GSD DG+ Y + WD D + L + TA + + + ++ T +D+ E+F
Sbjct: 1139 PHPDEMAGSDLDGDEYSIIWDQDML--LDYNETAMVFPSSSSQEEDKEPTTDDMVEFFLR 1196
Query: 689 YIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAA-TIPSRLRVK 747
Y+ DS+G + NAH+VYA + + C + ++ DF K+GV A + S +
Sbjct: 1197 YLQQDSIGRMSNAHLVYA--DLNGLFHENCHSIALKCAVAVDFPKSGVPAEPLTSHEQCD 1254
Query: 748 IYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNG--- 804
+ PD+M K Y S + G L+R+ + ++ + G++ + D +
Sbjct: 1255 VTPDYMISGGKPMYYSARLNGQLHRKARKVE---EVLEEYESRGSIFEGEYDKLICPENV 1311
Query: 805 ---FKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLS 842
F + R EY +++ L+D YGI+ EA ++S
Sbjct: 1312 DVFFGSESKLVQVMTLRDEYIDRMQQLLDEYGIEDEASVVS 1352
>gi|348680026|gb|EGZ19842.1| hypothetical protein PHYSODRAFT_558487 [Phytophthora sojae]
Length = 2706
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 187/679 (27%), Positives = 309/679 (45%), Gaps = 117/679 (17%)
Query: 255 TSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGK 314
+SP++ G ++Y K++VTPS+V FC P+ + SNRV R + E NF+ + F D+++ +
Sbjct: 1108 SSPSLG-SGAVVY--KVIVTPSRVVFCPPDPAPSNRVFRHWGSE--NFMYMYFRDDNMER 1162
Query: 315 LYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKK----FETLAFSNSQERENTLW 370
L T+G I R+ + L+ GI + + F L S SQ R N+
Sbjct: 1163 L---------DYTSGN----ILRRIRNVLKKGIEVPHARDGCRFNFLGCSLSQVR-NSSA 1208
Query: 371 MFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSNI---------- 420
+F L ++R +GD + + KY RLGQ+F+S++E +V ++
Sbjct: 1209 IFTL---LDHHEVRSWIGDLSHLTSPAKYLKRLGQAFSSTKETFNVSQSVLDNPVEDITN 1265
Query: 421 ---------GKISAELAETVAKKCGYAIYTPSAFQIRYGGYK------------------ 453
G+I+ AE++ ++ + YTPSAFQIR GG K
Sbjct: 1266 DDYVFTDGCGEIAKIGAESIVRELNLS-YTPSAFQIRLGGAKGVLVVSDQDNPEVTREES 1324
Query: 454 VTLRNNMFKYKSESTSLDILANSKYQREGVARLRL---------DNVFERKQREVVARLD 504
+ LR +M K+ S T L+I+A + + R + ++V Q + ++ L
Sbjct: 1325 ILLRESMSKFASNHTMLEIVACAGKSEAYLTRQSVLILSDLGINEDVLMEMQEQFLSELR 1384
Query: 505 AILTDSSKVQEALELMSSAENT---NVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELR 561
++ L+ + + +VL L G K + FLS + +T + L
Sbjct: 1385 TLIASDDGAYFELKAVLPPKVIWWIDVLTRKL--GVKILDDEFLSSLARTIYHYRLANTV 1442
Query: 562 TRARIFIQNGQAMMGCLDEKGTLEYGQGLM----------------------VVAKKPCL 599
RARI I G+ +MG D GTL+YG+ + V + PC
Sbjct: 1443 MRARIPIAQGRTLMGVADFTGTLDYGEVFVQYSVTEEETGADRYVTLDEVDVAVHRSPCH 1502
Query: 600 HPGDMRVLRA-VDVP-ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPP 657
HPGD+RVLR DVP L + DC++FP +G RPH +EC+G D DG+++ V WD IP
Sbjct: 1503 HPGDIRVLRCRADVPRQLRQLKDCIVFPCQGPRPHPDECTGGDLDGDMFVVIWDKRLIPS 1562
Query: 658 LQ--FQPTAYTPAPEKILA-------RDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYS 708
+P A+ E + + + + +++ I +D LG+ NAH+ S
Sbjct: 1563 RTQVHEPMAFDEENEGDTSPRGGEFYQSTDDDGLIDFYVHSIQDDILGVASNAHLALCDS 1622
Query: 709 EPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVG 768
+ ++ L ++ S D ++ I L K YPDFM+ ++K Y S+ ++G
Sbjct: 1623 SHEGSLDESAKALARICSKQVDSLRSEKDLEIVRSLAPKNYPDFMQNKEKPSYPSKKVLG 1682
Query: 769 NLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNL 828
++R I +T T K + M D G+ + + YR +Y +L L
Sbjct: 1683 KMFRRCKAIFDTTMT-KGVTQ---MPVRDDHFLTAGYTDY-VDHAKMLYR-QYKLRLRAL 1736
Query: 829 MDYYGIKTEAEMLSRCIME 847
+ G +TEAE+ + I+E
Sbjct: 1737 LLMSGAQTEAELATGMIVE 1755
>gi|241997884|ref|XP_002433585.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
gi|215495344|gb|EEC04985.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
Length = 528
Score = 213 bits (541), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 165/533 (30%), Positives = 241/533 (45%), Gaps = 86/533 (16%)
Query: 383 IRERMGDFREIKNVTKYAARLGQSFASS-------REALHVDSN---------------- 419
IR+ +GD I++V K AR+GQ+F+ S R+ V+++
Sbjct: 1 IRQGIGDLSSIRSVPKLMARMGQAFSQSLGFVTVPRQYTAVEADVRCRAPPGASAAALAE 60
Query: 420 -----------IGKISAELAETVAKKCGYAI-YTPSAFQIRYGGYK-------------V 454
IG+IS L V + P A QIRYGG K +
Sbjct: 61 AAKRDYIFSDGIGRISPALMRKVYRSLELEDGEEPCAVQIRYGGCKGMLLVDPTMAGRRI 120
Query: 455 TLRNNMFKYKSESTSLDILANSK-----YQREGVARLRLDNVFERKQREVVAR-LDAILT 508
R +M K+ S+ L +L SK R + L + + + R LD+ +
Sbjct: 121 VFRTSMCKFPSDHEDLYVLKTSKPRVLYLNRPMITILEQSGIRAKAFLALQNRVLDSFIN 180
Query: 509 DSSKVQEALELMSSAENTNV-LKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIF 567
EA +++ + KEL G EPF + + + L E T+ARI
Sbjct: 181 SMLDAHEAAQVLCGYCALRLPYKELAGVGVDLTVEPFFRGLIRAVNRKVLSEWLTKARIL 240
Query: 568 I--QNGQAMMGCLDEKGTLEYGQ----------------------GLMVVAKKPCLHPGD 603
+ + G+ M G LDE TLEYGQ G ++V K PC+HPGD
Sbjct: 241 VPPEKGRTMFGVLDETDTLEYGQVFVQYSNDMFRYKATDPATILKGDVIVTKNPCMHPGD 300
Query: 604 MRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPT 663
+R L AVDVP LHH+ DC++FPAKGERPH +E SGSD DG+ Y V W D I P
Sbjct: 301 IRRLTAVDVPRLHHVRDCIVFPAKGERPHPDEMSGSDLDGDEYSVLWYEDLIFRNNCSPM 360
Query: 664 AYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVK 723
Y P K + ++D+ ++F YI D +G+I NAH+V+A S RC DL +
Sbjct: 361 HYYSDPPKERKAPIEVQDMIDFFCQYIKGDKIGLIANAHLVWADMLDGGINSRRCRDLAR 420
Query: 724 LSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQD-KTWYESQHIVGNLYREVNGIAPSTT 782
++ DF+K G + + +YPDFMEK D K Y S+ ++G LYR + ST
Sbjct: 421 KCAVNLDFAKRGDLKGFQNSEKPPMYPDFMEKLDTKNTYCSKKVLGQLYRNCKKVELSTE 480
Query: 783 TIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIK 835
++ D + ++G +E ++ YR Y K+ L+ YGI+
Sbjct: 481 CLEVVED----SLPDPRLLLDG-REEFIESARTSYR-RYAMKIRALLKSYGIE 527
>gi|33331167|gb|AAQ10792.1| RNA-directed RNA polymerase-like protein [Branchiostoma floridae]
Length = 1005
Score = 213 bits (541), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 120/338 (35%), Positives = 179/338 (52%), Gaps = 28/338 (8%)
Query: 568 IQNGQAMMGCLDEKGTLEYGQ--------------------GLMVVAKKPCLHPGDMRVL 607
+ +G+ MMG +DE G L+YGQ G + V K P HPGDMR
Sbjct: 600 VTSGRIMMGTMDETGKLQYGQVFIQYSREVDKPQADKVVHQGQVTVTKNPYFHPGDMRKF 659
Query: 608 RAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTA-YT 666
AVDVP L HMVDC++FP++G RPH +E SGSD DG++YFV W I P + +P +T
Sbjct: 660 TAVDVPELRHMVDCIVFPSRGPRPHPDEMSGSDLDGDMYFVTWREGLILPRENRPAMDFT 719
Query: 667 PAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSS 726
P+++L R V D+ E+FA+YI ++ LG+I NAH+V+A E S +C DL +L S
Sbjct: 720 AQPKRVLHRPVQESDMIEFFAEYIGSNQLGLIANAHLVHADKEDQGIFSQKCIDLAQLHS 779
Query: 727 IVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKS 786
D KTG + LR ++YPDFM K DK Y S+ I+G L+R+ + + +
Sbjct: 780 DAVDAPKTGQCPELKGDLRPEVYPDFMMKSDKPQYRSERIIGRLFRKCQELDSANQRSGT 839
Query: 787 FAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIM 846
D D+ GF D Y+N + ++M YGI +E E++S CI+
Sbjct: 840 DDIVYHTSRIDHDLVREGFDSYIE--DAQTQLNIYNNMMMSIMSLYGITSEGEVVSGCIL 897
Query: 847 EMAKSFDKKRD-----LEAISFSVRSLRKEARAWFNKK 879
++ + ++ E + ++L ++ RA F K+
Sbjct: 898 KVKQRLGLLKNERFEVAEYVRARFKTLWRKTRAEFFKQ 935
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 113/377 (29%), Positives = 169/377 (44%), Gaps = 73/377 (19%)
Query: 171 SSAICLELPSRALIPKALKDF---FHYKESL-----VQFTLLPGFVFSCNSDLNQDGKHA 222
S+ + P+ A + KA DF + ++ +L V LP F+F + +D
Sbjct: 278 STRVITAPPTDANLSKAFDDFSVTYAWRCALSRGYKVSDRALPAFLFKLDIAARKDPIAT 337
Query: 223 LEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCG 282
L L + S + + + + L +Y K++VTP+++ F
Sbjct: 338 ASALHQLADTELKNASTIDQNHTED-------------LPDHYVYARKVVVTPTQMLFLK 384
Query: 283 PEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLST 342
PE + NRVVR Y +DNF+R++F DED KL + TN + RV
Sbjct: 385 PEPIVENRVVREY--GVDNFIRVAFRDEDFSKL---------AVTNPNSIRCVTSRVKDV 433
Query: 343 LRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELT--AADIRERMGDFREIKNVTKYA 400
L GI IG++ F+ L SNSQ RE+ WM+A+ + T +DIR MGD + V Y
Sbjct: 434 LERGIRIGERHFKYLGSSNSQMREHGCWMYAAVDKTTTSTSDIRGWMGDLSHERCVATYV 493
Query: 401 ARLGQSFASSREALHV----------------------DSNIGKISAELAETVAKKCGYA 438
+RLGQ F+SSR A+ V IGKIS LA+ VA G +
Sbjct: 494 SRLGQFFSSSRNAVSVSVEDRSVELIADVETSSGTHTFSDGIGKISVPLAKKVAAALGVS 553
Query: 439 IYTPSAFQIRYGGYK--------------VTLRNNMFKYKSESTSLDILANSKYQ--REG 482
PSAFQIRY G K + +R +M K++SE +L++ + +
Sbjct: 554 P-VPSAFQIRYAGCKGVLAQDPTLGNTDRIQIRGSMKKFESEHKTLEVTSGRIMMGTMDE 612
Query: 483 VARLRLDNVFERKQREV 499
+L+ VF + REV
Sbjct: 613 TGKLQYGQVFIQYSREV 629
>gi|268563038|ref|XP_002638736.1| C. briggsae CBR-EGO-1 protein [Caenorhabditis briggsae]
Length = 1631
Score = 212 bits (540), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 198/743 (26%), Positives = 305/743 (41%), Gaps = 165/743 (22%)
Query: 264 GLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQ 323
G V KI+ TP++V + PE + NRV+R Y + LR++F D+D K+ + S
Sbjct: 487 GYQRVRKIIFTPTRVIYVAPETLMGNRVLRRYDHDGTRVLRITFRDDDNQKMRTNKTSTL 546
Query: 324 ISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFAS--------- 374
+ T V + L NGI + + F L SNSQ R+N +
Sbjct: 547 LEKT-----------VNTYLMNGITVAGRNFGYLGSSNSQMRDNGAYFMEKYSSSQCREY 595
Query: 375 ------------RPELTAADIRERMGDFREIKNVTKYAARLGQSFASSR-EALHVD---- 417
P++ AA R+ +G F I N+ K ARLGQ F SR +++D
Sbjct: 596 EKMCRMAPPITFNPKIQAA--RKNLGRFETIDNIPKMMARLGQCFTQSRLSGVNLDRCTY 653
Query: 418 --------------------SNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK---- 453
+G +S A+ V++ + PS FQ R+ G K
Sbjct: 654 VTMYDLTGGKNIKGDEYTFSDGVGMMSMNFAQMVSQVMDFGKGVPSCFQFRFRGMKGVIA 713
Query: 454 -----------------------------VTLRNNMFKYKSESTSLDILANSKYQREGVA 484
R + K+ S+ D + KY
Sbjct: 714 VEPFLDDLRQWSIENDIQEVSEDTAWGLNCVFRPSQIKFISKRHPRDQVEIVKYSSPVPV 773
Query: 485 RLR------LDNVFERK----QREVVARLDAILTDSSKVQEALELMSSAENTNVLKEL-- 532
L LD V E + R V R++ +L D + A +++ N LKEL
Sbjct: 774 SLNKPFINILDQVSEMQSLECHRRVTNRIEELL-DRQMLSFAQQMIDETFCRNRLKELPR 832
Query: 533 --------LNCGYKPDAEPFL-SMMPQTFHASNLLELRT-RARIFIQNGQAMMGCLDEKG 582
G+ +EPF S++ + S +LR + I G++M+G +DE G
Sbjct: 833 RIDIDYLRTTWGFTLSSEPFFRSLIKASIKFSITKQLRKEQIPIPADLGRSMLGVVDETG 892
Query: 583 TLEYGQ------------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHM 618
L+YGQ G +++ K PC+ GD+R+ AVD+P LHHM
Sbjct: 893 RLQYGQIFVQYTRNLALKLPPKSASRSVLTGTVLLTKNPCIVAGDVRIFEAVDIPELHHM 952
Query: 619 VDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVT 678
D V+FP G RPH +E +GSD DG+ Y + WD + P +T +K ++
Sbjct: 953 CDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLLLDRNEDPFDFTSEKQKSSFKEEE 1012
Query: 679 IEDV-EEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNR-CPDLVKLSSIVGDFSKTG- 735
I+D+ E++ Y+ DS+G I N+H+ ++ ++ R C DL K + DF+K+G
Sbjct: 1013 IDDLMREFYVKYLKLDSVGTISNSHL---HNSDQYGLNARVCMDLAKKNCQAVDFTKSGQ 1069
Query: 736 --------------VAATIPSRLRVKIYPDFMEKQDKT-WYESQHIVGNLYREVNGIAPS 780
IP R + PD+ D T Y S + G L+RE I
Sbjct: 1070 PPEELERKWRKDEVTGEMIPPE-RAERVPDYHMGNDHTPMYVSPRLCGKLFREFKAID-D 1127
Query: 781 TTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEM 840
I E D + V+G+KE + Y+ +L ++M+ YGIKTE E+
Sbjct: 1128 VLKISEERDEQVEITIDETIMVDGYKEYM--HSAREDLARYNAQLRSMMENYGIKTEGEV 1185
Query: 841 LSRCIMEMAKSFDKKRDLEAISF 863
S CI++M K D + +SF
Sbjct: 1186 FSGCIVDMRNRISDK-DQDDMSF 1207
>gi|308476844|ref|XP_003100637.1| hypothetical protein CRE_20435 [Caenorhabditis remanei]
gi|308264655|gb|EFP08608.1| hypothetical protein CRE_20435 [Caenorhabditis remanei]
Length = 1685
Score = 212 bits (539), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 200/744 (26%), Positives = 318/744 (42%), Gaps = 167/744 (22%)
Query: 264 GLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQ 323
G V KI+ TP++V + PE + NRV+R Y + LR++F D+D K+ + S
Sbjct: 541 GYQRVRKIVFTPTRVIYVAPETLMGNRVLRRYDHDGTRVLRITFRDDDNQKMRTNKTSML 600
Query: 324 ISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWM-----------F 372
+ T V + LR+GI + + F L SNSQ R+N + +
Sbjct: 601 LDKT-----------VHTYLRDGITVAGRDFGYLGSSNSQMRDNGAYFMEKYSSSQCREY 649
Query: 373 ASR----------PELTAADIRERMGDFREIKNVTKYAARLGQSFASSR----------- 411
SR P++ AA R+ +G F I N+ K ARLGQ F SR
Sbjct: 650 QSRTGVKPPIDFNPKIQAA--RKNLGRFETIDNIPKMMARLGQCFTQSRLSGVNLERCTY 707
Query: 412 --------------EALHVDSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYKVT-- 455
+ +G +S A+ V+ + PS FQ R+ G K
Sbjct: 708 MTTYDLTGGKNVKRDEYTFSDGVGMMSHHFAQMVSHVMDFGKGVPSCFQFRFRGMKGVIA 767
Query: 456 ---LRNNMFKY--------KSESTSLDI----------LANSKYQREGVARLR------- 487
L +N+ ++ SE TS ++ + ++ R+ V ++
Sbjct: 768 VEPLLDNIRQWFLENGIPEASEETSWNLNCVFRPSQIKFISKRHPRDQVEIVKYSSPVPV 827
Query: 488 ---------LDNVFERK----QREVVARLDAILTDSSKVQEALELMSSAENTNVLKEL-- 532
LD V E + R V R++ +L D + A +++ N LKEL
Sbjct: 828 ALNKPFINILDQVSEMQSLECHRRVTNRIEELL-DRQMLSFAQQMVDETFCRNRLKELPR 886
Query: 533 --------LNCGYKPDAEPFL-SMMPQTFHASNLLELRTRARIFIQN--GQAMMGCLDEK 581
+ G+ +EPF S++ + S +LR + +I I + G++M+G +DE
Sbjct: 887 RIDIDYLRTSWGFTLSSEPFFRSLIKASIKFSITRQLR-KEQIPIPSELGRSMLGVVDET 945
Query: 582 GTLEYGQ------------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHH 617
G L+YGQ G +++ K PC+ GD+RV AVD+P LHH
Sbjct: 946 GRLQYGQIFVQYTKNLALKLPPKNAAREVLTGTVLLTKNPCIVAGDVRVFEAVDIPELHH 1005
Query: 618 MVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDV 677
M D V+FP G RPH +E +GSD DG+ Y + WD + P +T +K ++
Sbjct: 1006 MCDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLLLDKNEIPFDFTSEKQKTEFKEE 1065
Query: 678 TIEDV-EEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNR-CPDLVKLSSIVGDFSKTG 735
I+ + E++ Y+ DS+G I N+H+ ++ +++R C DL K + DF+K+G
Sbjct: 1066 DIDALMREFYVKYLKLDSVGTISNSHL---HNSDQYGLNSRVCMDLAKKNCQAVDFTKSG 1122
Query: 736 ---------------VAATIPSRLRVKIYPDFMEKQDKT-WYESQHIVGNLYREVNGIAP 779
IP R + PD+ D Y S + G L+RE I
Sbjct: 1123 QPPDELEKKWRRDEETGEMIPPE-RAERVPDYHMGNDHAPMYVSPRLCGKLFREFKAI-D 1180
Query: 780 STTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAE 839
I E D M ++G+KE + + Y+ +L ++M+ YGIKTE E
Sbjct: 1181 DVLKISEERDEQVEITIDETMMIDGYKEYM--HSAREDLSRYNAQLRSMMENYGIKTEGE 1238
Query: 840 MLSRCIMEMAKSFDKKRDLEAISF 863
+ S CI++M K D + +SF
Sbjct: 1239 VFSGCIVDMRNRISDK-DQDDMSF 1261
>gi|170582151|ref|XP_001896001.1| RNA dependent RNA polymerase family protein [Brugia malayi]
gi|158596891|gb|EDP35156.1| RNA dependent RNA polymerase family protein [Brugia malayi]
Length = 1475
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 189/708 (26%), Positives = 293/708 (41%), Gaps = 148/708 (20%)
Query: 262 DGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLS 321
D G V K ++TP+++ PE+ + NRV+R + + D+ LR+ F D+D L
Sbjct: 464 DEGFQRVRKAVITPTRMLLVIPELLMGNRVLREFDESGDDALRIQFRDDDGAHL------ 517
Query: 322 PQISSTNGERRTR-----IYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRP 376
RR+R I V ++L G+ I D+ F LA SNSQ R+N + F
Sbjct: 518 ---------RRSRAGLYIIETTVHNSLLRGVYISDRHFVYLASSNSQMRDNGCYFFNDGD 568
Query: 377 ELTAADIRERMGDFREIKNVTKYAARLGQSFASSREA----------------------- 413
+ IR+++G F + N+ K +R+GQ F S+E
Sbjct: 569 DGKVKMIRDKLGKF-DHTNIPKLMSRMGQCFTQSKETDVTLKRRKYNKTHDVIGGKDSCG 627
Query: 414 --LHVDSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYKVTL--------------R 457
+GK+S + AE +A G A PS FQ RY G K L R
Sbjct: 628 EPFIFSDGVGKLSEDFAEQIANDLGLAKCVPSCFQFRYRGLKGVLSVDPALRQRRLWAER 687
Query: 458 NNMFKYKSESTSLD-------------------ILANSKYQREGVARLR------LDNVF 492
N + +++ ++ I+ KY L LD V
Sbjct: 688 NGLEDKHAKTAKVNDLDIIFRPSQDKFHAPRKEIIEIVKYSSPTSVYLNRPLINILDQVS 747
Query: 493 ERK----QREVVARLDAILTDSSKVQEALELMSSAENTNVLKEL---LNCGYKPDAEPFL 545
+ + +V R+ +L D ++ + LMS L E +N Y A F
Sbjct: 748 DMQGFDVHSRIVNRIHGLL-DRQLLKLSDALMSEDRCRERLAEFPRRINVQYLSVARGFT 806
Query: 546 SMMPQTFHASNLLELR---------TRARIFIQNGQAMMGCLDEKGTLEYGQ-------- 588
FH + +R +I G+ M G LDE G L+YGQ
Sbjct: 807 LTQEPFFHGLLIASVRFTLQKQLSKEHIQIPANLGRTMFGILDETGLLQYGQVFVQFTND 866
Query: 589 ----------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPH 632
G +++ K P + GD+R+ AVD+P L H+VD V+FP G RPH
Sbjct: 867 VFLKTPPKAAAKTIVKGFVLITKNPSIVAGDVRIFEAVDLPELRHLVDVVVFPQHGPRPH 926
Query: 633 TNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPA--PEKILARDVTIEDVEEYFADYI 690
T+E +GSD DG+ Y V WD + +P ++ P IL D + ++ ++ +Y+
Sbjct: 927 TDEMAGSDLDGDEYSVIWDDQMLFSHNEEPMDFSKLIRPPDILKEDEVVREMRRFYVEYV 986
Query: 691 VNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGV-------------- 736
+ DS+GII NA +V S+ S+ C + + S DF KTG
Sbjct: 987 MQDSIGIIANAFLV--NSDTFGIASDVCMSIAEKHSQSVDFPKTGQPPKPLVKEWSNGPD 1044
Query: 737 AATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFY 796
IP R + +PDFM K + Y S +VG L+R + I T ++ + +
Sbjct: 1045 GKMIPPE-RPERWPDFMCKTHEPSYVSTRLVGQLFRRIRLIDDVLTITRAHETQSKVTV- 1102
Query: 797 DTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRC 844
D +E +G++ + + D Y + LMD YGI+ E ++ S C
Sbjct: 1103 DPLLEYSGWE--SYENDATLNLIAYSAHIRALMDNYGIEDECQLYSGC 1148
>gi|17506499|ref|NP_492132.1| Protein EGO-1 [Caenorhabditis elegans]
gi|8886068|gb|AAF80367.1| RNA-directed RNA polymerase related EGO-1 [Caenorhabditis elegans]
gi|14530420|emb|CAB01701.2| Protein EGO-1 [Caenorhabditis elegans]
Length = 1632
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 196/743 (26%), Positives = 302/743 (40%), Gaps = 165/743 (22%)
Query: 264 GLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQ 323
G V KI+ TP++V + PE + NRV+R Y + LR++F D+D K+ + S
Sbjct: 487 GYQRVRKIIFTPTRVIYVAPETLMGNRVLRRYDHDGTRVLRITFRDDDNQKMRTNKTSTM 546
Query: 324 ISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFAS--------- 374
+ T V L+NGI + + F L SNSQ R+N +
Sbjct: 547 LEKT-----------VNQYLKNGITVAGRNFGYLGSSNSQMRDNGAYFMEKYSSSQCREY 595
Query: 375 ------------RPELTAADIRERMGDFREIKNVTKYAARLGQSFASSR----------- 411
P++ AA R+ +G F I N+ K ARLGQ F SR
Sbjct: 596 ERIYQIKPPITFNPKIQAA--RKNLGRFETIDNIPKMMARLGQCFTQSRLSGVNLERCTY 653
Query: 412 --------------EALHVDSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK---- 453
+ +G +S A+ V++ + PS FQ R+ G K
Sbjct: 654 MTTYDLTGGKNLKGDEYTFSDGVGMMSYRFAQMVSEVMDFGKGVPSCFQFRFRGMKGVIS 713
Query: 454 -----------------------------VTLRNNMFKYKSESTSLDILANSKYQREGVA 484
R + K+ S+ D + KY
Sbjct: 714 IEPLLDNLRQWSISYNISKPSDDSSWSLNCMFRPSQIKFISKRHPRDQVEIVKYSSPVPV 773
Query: 485 RLR------LDNVFERK----QREVVARLDAILTDSSKVQEALELMSSAENTNVLKEL-- 532
L LD V E + R V R++ +L D + A +++ N LKEL
Sbjct: 774 ALNKPFINILDQVSEMQSLECHRRVTNRIEELL-DRQMLSFAQQMVDETFCRNRLKELPR 832
Query: 533 --------LNCGYKPDAEPFL-SMMPQTFHASNLLELRT-RARIFIQNGQAMMGCLDEKG 582
G+ +EPF S++ + S +LR + I G++M+G +DE G
Sbjct: 833 RVDIDYLRTTWGFTLSSEPFFRSLIKASIKFSITRQLRKEQIPIPCDLGRSMLGVVDETG 892
Query: 583 TLEYGQ------------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHM 618
L+YGQ G +++ K PC+ GD+R+ AVD+P LHHM
Sbjct: 893 RLQYGQIFVQYTKNLALKLPPKNAARQVLTGTVLLTKNPCIVAGDVRIFEAVDIPELHHM 952
Query: 619 VDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVT 678
D V+FP G RPH +E +GSD DG+ Y + WD + P +T +K ++
Sbjct: 953 CDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLLLDKNEDPYDFTSEKQKASFKEDE 1012
Query: 679 IEDV-EEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNR-CPDLVKLSSIVGDFSKTG- 735
I+D+ E++ Y+ DS+G I N+H+ ++ ++ R C DL K + DF+K+G
Sbjct: 1013 IDDLMREFYVKYLKLDSVGQISNSHL---HNSDQYGLNARVCMDLAKKNCQAVDFTKSGQ 1069
Query: 736 --------------VAATIPSRLRVKIYPDFMEKQDKT-WYESQHIVGNLYREVNGIAPS 780
IP R + PD+ D T Y S + G L+RE I
Sbjct: 1070 PPDELERKWRKDEETGEMIPPE-RAERVPDYHMGNDHTPMYVSPRLCGKLFREFKAI-DD 1127
Query: 781 TTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEM 840
I E D ++++G+ E R Y+ +L ++M+ YGIKTE E+
Sbjct: 1128 VLKISEERDEQVEISIDETIKIDGYTEYMASAKNDLAR--YNAQLRSMMENYGIKTEGEV 1185
Query: 841 LSRCIMEMAKSFDKKRDLEAISF 863
S CI++M K D + +SF
Sbjct: 1186 FSGCIVDMRNRISDK-DQDDMSF 1207
>gi|34447177|dbj|BAC84970.1| RNA-directed RNA Polymerase [Vigna unguiculata]
Length = 257
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 117/209 (55%), Positives = 143/209 (68%), Gaps = 4/209 (1%)
Query: 682 VEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIP 741
VEEYF +YIVNDSLGII NAH V+A ++P KAMS C L KL S DF KTGV A IP
Sbjct: 1 VEEYFTNYIVNDSLGIIANAHTVFADNQPRKAMSEECLKLAKLFSTAVDFPKTGVPAVIP 60
Query: 742 SRLRVKIYPDFMEKQDKTWYESQHIVGNLYREV--NGIAPSTTTIKSFAKEGAMQFYDTD 799
L VK YPDFMEK DK Y S +++G LYREV + +I SF +E A YD D
Sbjct: 61 RVLYVKEYPDFMEKSDKETYISPNVIGKLYREVIEAISSSDGGSISSFTREVARTSYDFD 120
Query: 800 MEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRDLE 859
MEV+GF + D F ++T YD KLGNLMDYYGIKTEAE+LS I++++K F+K+RD E
Sbjct: 121 MEVDGFLDYVD--DAFYHKTNYDYKLGNLMDYYGIKTEAEILSGNIIKLSKCFNKRRDAE 178
Query: 860 AISFSVRSLRKEARAWFNKKKNDSDSSHK 888
AI+ +V SLRK+AR+WFN+ N D K
Sbjct: 179 AINKAVTSLRKDARSWFNEGNNGDDEYAK 207
>gi|134114255|ref|XP_774375.1| hypothetical protein CNBG3560 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257010|gb|EAL19728.1| hypothetical protein CNBG3560 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1123
Score = 209 bits (532), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 172/581 (29%), Positives = 274/581 (47%), Gaps = 80/581 (13%)
Query: 265 LIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQI 324
L+ + +LVTP+++ P+ SN V R Y D++D +R+ F DE+ +L+ I
Sbjct: 367 LVLIRTVLVTPTRLLIGPPQYEPSNSVTRRYHDKLDGIIRVQFTDEE-DRLFIADNMKLI 425
Query: 325 SSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIR 384
S N I RV L+ G++IG + F +A S SQ++E+ +W F + + ++R
Sbjct: 426 DSINPA--VGIMARVRRALQFGLIIGGETFYPVASSASQQKEHAMW-FINNKVIDGLELR 482
Query: 385 ERMGDFREIKNVTKYAARLGQSFASSREALHVDSNIGKISAEL---AETVAKKCGYA--- 438
MG E V K+AAR+G F++SR +++ NIG+ ++ CG A
Sbjct: 483 NWMGTVHETV-VAKHAARMGLPFSTSR-IVNMKINIGEELPDIERNGRCFTDGCGIAGRE 540
Query: 439 ---------------IYTPSAFQIRYGG--------------YKVTLRNNMFKYKSESTS 469
PSA Q R GG Y++ LR +M K+KS+
Sbjct: 541 VLNQAALALNEKVGINSQPSAIQFRLGGAKGVLSDWSQLVNEYEIRLRPSMIKFKSDLAD 600
Query: 470 LDILANSKYQR-------------EGVARLRLDNVFERKQREVVARLDAILTDSSKVQEA 516
L+++ +KYQ GV + +FE ++ D + ++ V E
Sbjct: 601 LNVIRIAKYQAAFLNRQFINIMCANGVPHELIIGIFEDAIADIKGFKDRVWNNA--VTEN 658
Query: 517 LELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMG 576
+ + + N L +L+ G+ + P L + L +L+ RAR+ + +G ++G
Sbjct: 659 DQQLIALCNDFPLAQLIKSGF--NENPLLLDVAAIIECRALQDLKWRARVKLLDGVYLIG 716
Query: 577 CLDEKGTLEYGQGL-----------------MVVAKKPCLHPGDMRVLRAVDVPALHHMV 619
DE GTL+ G+ ++V + P LHPGD+R AVD P L H+
Sbjct: 717 IADETGTLKEGEVFCQFQENDESPPKIVVNEVLVCRAPALHPGDVRRAWAVDNPELRHLK 776
Query: 620 DCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ-FQPTAYTPAPEKILARDVT 678
+ ++F +G R + G D DG+ Y + WD + L+ + P Y AP+ I + VT
Sbjct: 777 NVIVFSTQGMRDMPSMLGGGDLDGDDYTLIWDQRFVQSLKVYDPMDYE-APDPISVKHVT 835
Query: 679 IEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAA 738
+ + E F YI+ND LG + N H+ A S+ RC L ++ S DF+KTG AA
Sbjct: 836 QKHLNENFVQYILNDVLGQVDNCHL--ALSDMYTPFDPRCLHLSEIHSTAVDFAKTGQAA 893
Query: 739 TIPSRLRVKIYPDFMEKQD-KTWYESQHIVGNLYREVNGIA 778
+ LR K +PDFM+K D K YES I+G ++R V A
Sbjct: 894 ALDPSLRPKEWPDFMDKDDVKVVYESTGILGKIFRIVQADA 934
>gi|242809058|ref|XP_002485290.1| RNA-dependent RNA polymerase, putative [Talaromyces stipitatus ATCC
10500]
gi|218715915|gb|EED15337.1| RNA-dependent RNA polymerase, putative [Talaromyces stipitatus ATCC
10500]
Length = 1207
Score = 209 bits (532), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 162/624 (25%), Positives = 279/624 (44%), Gaps = 132/624 (21%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
++++ VTP+ +Y GP + NRV+R Y + D F+R+ F++E + + S+
Sbjct: 415 IHRLSVTPTGIYLDGPNVEAENRVLRKYRHQSDYFIRVRFIEESGDPMMYDI------SS 468
Query: 328 NGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE-----LTAAD 382
N +R + +R LR+G++I D+ + L FS+S R + W A + +T
Sbjct: 469 NLDRIFK--DRFGEVLRDGVIIADRHYRFLGFSHSSLRSRSCWFMAEFHDSEGQLITVNS 526
Query: 383 IRERMGDFREIKNVTKYAARLGQSFASSREALHVDSNI----------GKISAELAETVA 432
+ ++GDF I++ K+AARLGQ+F+ + ++ VD ++ G++ ++ T++
Sbjct: 527 LISKLGDFSHIRSPAKFAARLGQTFSDTLTSISVDRDMVKRIDDVERNGRVFSDGCGTIS 586
Query: 433 KKCGYAIYT---------PSAFQIRYGGYK-------------VTLRNNMFKYKSEST-- 468
K+ + IY P+ FQ+R G K + LR++M K+++E+
Sbjct: 587 KEVLWRIYRDYPRNAAVRPTVFQVRISGAKGMLSLDPRLKGPTICLRDSMIKFRAEADHN 646
Query: 469 ---------SLDILANSKY----QREGVARLRLDNVFERKQREVVARLDAILTDSSKVQE 515
SL N+ + GVAR ++F QRE V L + +
Sbjct: 647 IEICGSGIHSLPCYLNAPLIKILEDLGVAR----DLFLELQREEVQNLRLAIRSPRQAAS 702
Query: 516 ALELMSSAENTNV---LKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQ 572
L+ ++T + + L + G + + FL + L +L+ RARI +
Sbjct: 703 FLDQAHITKSTRLSWLITVLQSMGLNYNQDKFLKRAVELVILMKLRDLKYRARILVPEAV 762
Query: 573 AMMGCLDEKGTLEYG------------------QGLMVVAKKPCLHPGDMRVLRAVDVP- 613
+ G +DE G L+ G Q +++ + P HPGD++++ AV+VP
Sbjct: 763 TLYGIMDETGYLQEGEIFVPILNEVTKRRNILVQNKVLITRSPAFHPGDVQMVNAVNVPE 822
Query: 614 --ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQ----PTAYTP 667
L + +CV+F KGER ++ SG D DG+I+ + +D P + Q P Y
Sbjct: 823 ASPLRKLHNCVVFSQKGERDLPSQLSGGDLDGDIFNIIYD----PRFRLQRLARPADYPR 878
Query: 668 APEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSI 727
AP +L R V +ED++++F +++ D LG I H + A + C L L S
Sbjct: 879 APGTVLDRPVQMEDIQKFFIEFMQQDQLGRIATTHKILADQQAAGTFDPNCLTLAHLHST 938
Query: 728 VGDFSKTGVAATIPSRLRVKIY-PDFM----------------EKQDKTW---------- 760
DFSKTG I + Y PDFM + ++ W
Sbjct: 939 AVDFSKTGTPVDIKQIPKYPPYRPDFMAPGPRVRVAESIEVLDDGREHIWDDGGSIIDDD 998
Query: 761 ---------YESQHIVGNLYREVN 775
Y+SQ ++G LYR +N
Sbjct: 999 DDVRPPLRYYKSQRVLGALYRTIN 1022
>gi|341891711|gb|EGT47646.1| CBN-EGO-1 protein [Caenorhabditis brenneri]
Length = 1632
Score = 208 bits (529), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 193/743 (25%), Positives = 311/743 (41%), Gaps = 165/743 (22%)
Query: 264 GLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQ 323
G V KI+ TP++V + PE + NRV+R Y + LR++F D+D K+ + S
Sbjct: 487 GYQRVRKIIFTPTRVIYVAPETLMGNRVLRRYDHDGTRVLRITFRDDDNQKMRTNKTSTL 546
Query: 324 ISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFAS--------- 374
+ T V + L +GI + + F L SNSQ R+N +
Sbjct: 547 LEKT-----------VNNYLHSGITVAGRNFGYLGSSNSQMRDNGAYFMEKYSSSQCREY 595
Query: 375 ------------RPELTAADIRERMGDFREIKNVTKYAARLGQSFASSR-EALHVD---- 417
P++ AA R+ +G F I N+ K ARLGQ F SR +++D
Sbjct: 596 EAIHHVKPPITYNPKIQAA--RKNLGRFETIDNIPKMMARLGQCFTQSRLSGVNLDRCTY 653
Query: 418 --------------------SNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYKVTL- 456
+G +S A+ V++ + PS FQ R+ G K +
Sbjct: 654 MTMYDLTGGKNIKRDEYTFSDGVGMMSLRFAQMVSQVMDFGKGVPSCFQFRFRGMKGVIA 713
Query: 457 --------RNNMFKYKSESTSLDI--------------LANSKYQREGVARLR------- 487
R ++ E S D+ + ++ R+ V ++
Sbjct: 714 VEPLLDMIRKWSLEFALEKPSDDVAWGLNCVFRPSQIKFISKRHPRDQVEIVKYSSPVPV 773
Query: 488 ---------LDNVFERK----QREVVARLDAILTDSSKVQEALELMSSAENTNVLKEL-- 532
LD V E + R V R++ +L D + A +++ N LKEL
Sbjct: 774 SLNKPFINILDQVSEMQSLECHRRVTNRIEELL-DRQMLLFAQQMVDETFCRNRLKELPR 832
Query: 533 --------LNCGYKPDAEPFL-SMMPQTFHASNLLELRTRARIFIQN-GQAMMGCLDEKG 582
G+ +EPF S++ + S +LR Q+ G++M+G +DE G
Sbjct: 833 RVDIDYLRTTWGFTLSSEPFFRSLIKASIKFSITKQLRKEQIPIPQDLGRSMLGVVDETG 892
Query: 583 TLEYGQ------------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHM 618
L+YGQ G +++ K PC+ GD+R+ AVD+P LHHM
Sbjct: 893 RLQYGQIFVQYTKNLALKLPPKNAARQVLTGTVLLTKNPCIVAGDVRIFEAVDIPELHHM 952
Query: 619 VDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVT 678
D V+FP G RPH +E +GSD DG+ Y + WD + P +T +K ++
Sbjct: 953 CDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLLLDKNEDPFDFTSEKQKSSFKEEE 1012
Query: 679 IEDV-EEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNR-CPDLVKLSSIVGDFSKTG- 735
I+D+ E++ Y+ DS+G I N+H+ ++ ++ R C DL K + DF+K+G
Sbjct: 1013 IDDLMREFYVKYLKLDSVGTISNSHL---HNSDQYGLNARVCMDLAKKNCQAVDFTKSGQ 1069
Query: 736 --------------VAATIPSRLRVKIYPDFMEKQDKT-WYESQHIVGNLYREVNGIAPS 780
IP R + PD+ D T Y S + G L+RE I
Sbjct: 1070 PPDELERKWRKDEETGEMIPPE-RCERVPDYHMGNDHTPMYVSPRLCGKLFREFKAI-DD 1127
Query: 781 TTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEM 840
I E D ++ ++G++ + + Y+ +L ++M+ YGIKTE E+
Sbjct: 1128 VLKISEERDEQVEISIDENIMMDGYE--SYMHSARDELSRYNAQLRSMMENYGIKTEGEV 1185
Query: 841 LSRCIMEMAKSFDKKRDLEAISF 863
S CI++M K D + +SF
Sbjct: 1186 FSGCIVDMRNRISDK-DQDDMSF 1207
>gi|358378399|gb|EHK16081.1| hypothetical protein TRIVIDRAFT_10390, partial [Trichoderma virens
Gv29-8]
Length = 1247
Score = 207 bits (526), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 164/619 (26%), Positives = 269/619 (43%), Gaps = 119/619 (19%)
Query: 267 YVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISS 326
+V K++VTP+++ GP+ NRV+R +P D F R+ F DED L L P +++
Sbjct: 425 WVLKVMVTPTRIMLHGPDGENKNRVLRMFPQHSDYFARVIFGDEDGQDL---ALLPSVNN 481
Query: 327 TNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWM---FASRPELTAAD- 382
+ I+ER +++GI + +KFE L FS+S R ++ W F + EL D
Sbjct: 482 SA------IFERYRKIMKDGIHVAGRKFEFLGFSHSSLRSHSAWFCAPFVDKMELQNNDS 535
Query: 383 IRERMGDFREIKNVTKYAARLGQSFASSREALHV----------------------DSNI 420
I +GDF +I+ K AAR+GQ+F+ + A+ + +
Sbjct: 536 IIRSLGDFSDIRIPAKCAARIGQAFSETPYAVDILKCGIGIKYIPDVKTADGKRVFSDGV 595
Query: 421 GKISAELAETVAKKCGYAIYTPSAFQIRYGGYKVTL--------------RNNMFKY-KS 465
G IS + E + + P+ FQ+R GG K L + +M K+ S
Sbjct: 596 GTISWDAMEEIWDRLPMNNSAPTCFQVRLGGIKGMLSLDSRLKGKVICIRKESMMKFPSS 655
Query: 466 ESTSLDILANSKYQREGVARLRLDNVFE-------------RKQREVVARLDAILTDSSK 512
+ T+L I + V + + E K +V+ + A +++S
Sbjct: 656 DQTTLGICDTASKPLRLVLNRQTIKILEDMGTNFEWFIDQQNKALDVLRNVTASASNTST 715
Query: 513 VQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQ 572
E+ + ++ ++K L G + F+ + L L+ +ARI + G
Sbjct: 716 FLESQLVGTNVGFPKLIKYLNKVGIDYRRDKFMKKVVDHTILRELRLLKHKARIPVDQGV 775
Query: 573 AMMGCLDEKGTLEYGQ----------------------GLMVVAKKPCLHPGDMRVLRAV 610
+ G +DE G LE GQ G +++ + P LHPGD+++ + +
Sbjct: 776 TLFGIMDETGFLEEGQIYVTFDSSYDKAQGRVKGSLKDGFVLITRSPALHPGDIQLAQVM 835
Query: 611 DVPALHHMVD---CVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTP 667
P H + D CV+F KG R ++ SG D DG++Y + WD IP F P Y
Sbjct: 836 TPPHGHPLRDLRNCVVFSQKGSRDLPSQLSGGDLDGDLYSIFWDPFVIPKSYFTPADYPR 895
Query: 668 APEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSI 727
L R VT ED+ ++F ++ D LG+I N H ++A + + + C +L +L S
Sbjct: 896 VTPPALDRVVTREDIADFFVKFMETDILGMIANRHQIFADFKDEGTVDQVCTNLAELHST 955
Query: 728 VGDFSKTGVAATIPSRLRV-KIYPDF------------------------------MEKQ 756
D+SKTG+ TI + ++ PDF M
Sbjct: 956 AVDYSKTGIPVTIQQLPKAPRLRPDFLAPAPPTRLYDRGEVSHIGDPESDEDDEDGMGAS 1015
Query: 757 DKTWYESQHIVGNLYREVN 775
K +Y+SQ I+G LYR V+
Sbjct: 1016 KKGYYKSQKILGELYRGVD 1034
>gi|290974592|ref|XP_002670029.1| RNA-directed RNA polymerase [Naegleria gruberi]
gi|284083583|gb|EFC37285.1| RNA-directed RNA polymerase [Naegleria gruberi]
Length = 663
Score = 206 bits (524), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 162/564 (28%), Positives = 260/564 (46%), Gaps = 87/564 (15%)
Query: 387 MGDFREIKNVTKYAARLGQSFASSREALHVDSNI-----------------GKISAELAE 429
MGDF +IK K AAR GQ S+ ++ + +I GKIS E+ +
Sbjct: 1 MGDFTDIKTPAKVAARFGQCLTSTTPSIEITKDIEPVEDIERNGFTFTDGIGKISEEMMQ 60
Query: 430 TVAKKCGYAIYTPSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLDILANS 476
V +K SA Q R GG K + R + FK+ S L+I+ S
Sbjct: 61 RVKEKLQLGESLLSAIQFRCGGGKGVLAIDPTLKGEQIVFRKSQFKFTSIQKQLEIVDYS 120
Query: 477 KYQREGVARLRL----------DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENT 526
K +R G + D +F KQRE++ + +I D SK E L + S
Sbjct: 121 K-RRSGFLNRQFITILTALGIKDEIFMTKQREMIRSILSITDDVSKAYEWLSIYHSNHTR 179
Query: 527 NVLKELLNCGYKPD---AEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGT 583
+ +L Y P+ +E F+ M ++ L LR + +I+I+ +MG +DE G
Sbjct: 180 TFICHVLK--YVPEIATSENFIMNMLSSYKEQLLKGLRDKTKIYIEKSAYLMGAIDEYGV 237
Query: 584 LE------------------YG--QGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVL 623
LE +G +G +V K P LH GD+R++ AVD P L+H+ D V+
Sbjct: 238 LEENEIFVNLSPIFHRPNAEFGVVKGRCIVGKNPSLHKGDLRIVTAVDRPELYHLNDVVV 297
Query: 624 FPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYT------PAPEK---ILA 674
F KG+RP TN +GSD DG+ +FV WD D IP +P Y+ P +K
Sbjct: 298 FSKKGKRPITNMITGSDLDGDQFFVYWDPDLIPESDSEPMDYSVGAVAKPTNKKDEEEEE 357
Query: 675 RDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKT 734
+ +D+ ++F ++I ++LG+I N H+ + + S C L +L S D +K+
Sbjct: 358 YKIKQDDIIDFFIEFITRNNLGLIANTHLANSDFRKNGLTSKECLTLCELHSTAVDSAKS 417
Query: 735 GVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQ 794
G A IPS++++ YP FM K Y+S+ ++G L+ E T K +
Sbjct: 418 GKFAIIPSKVKLYEYPHFMISSMKRKYKSKKVLGKLFDE--------TQFKHETPGKCNK 469
Query: 795 FYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSF-D 853
+++ + V+GF + + + Y Y + + M YG++ E++++S I K F
Sbjct: 470 KHNSLLIVDGFDKYLKEIEPHYYN--YSRFVNSDMVKYGVEDESQIISGWINTNIKCFGH 527
Query: 854 KKRDL-EAISFSVRSLRKEARAWF 876
K+ D+ E I+ ++ K R F
Sbjct: 528 KEHDIHETIAITISFYLKHFRNVF 551
>gi|452977804|gb|EME77568.1| hypothetical protein MYCFIDRAFT_60792 [Pseudocercospora fijiensis
CIRAD86]
Length = 1015
Score = 206 bits (524), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 175/693 (25%), Positives = 301/693 (43%), Gaps = 148/693 (21%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
++K++VTP+ + GPE +NRV+R Y + ID+F+R+ F DE G + P+
Sbjct: 210 IHKVIVTPAGIRLEGPEPEPTNRVLRKYAENIDDFVRVVFQDEHGGPVR---YDPRTDLA 266
Query: 328 NGERRTRIY-ERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE-----LTAA 381
RIY ER + L IVI + F L FS+S R + W A + A
Sbjct: 267 ------RIYHERFRNVLDTSIVICGRGFSFLGFSHSSLRSQSCWFMAPFVNRNGRLIFAE 320
Query: 382 DIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN------------------IGKI 423
+ + +GDF I+ K AAR+GQ+F + +H++ + +G I
Sbjct: 321 KVLKGLGDFSSIRTPAKCAARIGQNFTDTNATVHLEPDQVFDLQVIERNGRDFSDGVGTI 380
Query: 424 SAELAETVAKKCGYA-IYTPSAFQIRYGGYK-------------VTLRNNMFKYKSEST- 468
S L V ++ G + P+ QIR+ G K + LR NM KY +E++
Sbjct: 381 SEALLREVWRRYGTKKMLKPTVLQIRFQGAKGMVSLDPRLPGKALMLRANMRKYDTETSW 440
Query: 469 SLDILANSKYQREGVARLRLDNVFE-------------RKQREVVARLDAILTDSSKVQE 515
L+I V + +FE R + + ++ A+ +S+K+ E
Sbjct: 441 VLEICGAGFKPLPMVLNQQFIKIFEDLGIPMSVFLDLQRSAMKHLRQMTALSVNSAKLLE 500
Query: 516 ALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMM 575
+ + ++++L G+ + FL + + + L +++ RARI ++ G +
Sbjct: 501 DSGIARATGMPRLIRDLAQIGFDYHEDHFLYSIVEMAVVTQLRDIKYRARIPVEAGVTLY 560
Query: 576 GCLDEKGTLEYGQGLM------------------VVAKKPCLHPGDMRVLRAVDVPA--- 614
G +DE G L+ GQ + V+ + P +HPGD++V+ AVDVP
Sbjct: 561 GIMDETGYLKEGQIFVITEKAPEGGKHILIKDKVVITRSPAMHPGDIQVVDAVDVPPNSL 620
Query: 615 LHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILA 674
L + + V+F G+R ++ SG D DG+IY + W +P + Y +L
Sbjct: 621 LRRLSNVVVFSKWGDRDLPSKLSGGDLDGDIYNIIWHEGMVPRTTYTAADYPRVSPLVLD 680
Query: 675 RDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKT 734
R+VTI+D+ ++F ++ D LG+IC H A ++ C L L+S D+SKT
Sbjct: 681 REVTIKDMSDFFVTFMETDLLGMICTTHKQLADQREAGSLDPDCLTLAGLASTAVDYSKT 740
Query: 735 GVAA---TIPSRLRVKIYPDFM--------------------------------EKQDKT 759
G++ IP + PDFM E++
Sbjct: 741 GISVKHTQIPRNDKHIFRPDFMSPTPRVVVSSEGLADLEKEEEVDDDAFEGLDSERRSYR 800
Query: 760 WYESQHIVGNLYREVN-------------GIAPS------TTTIKSFAKEGAMQ-FYDTD 799
+Y S+ +G+LYR+++ IAP TT + ++ K+ A+ F+D
Sbjct: 801 YYPSEKTLGHLYRDIDENQFLRTMQQQYRAIAPRSKTQDLTTRLLAYLKQNAVNVFWD-- 858
Query: 800 MEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYY 832
+ A+ D R+ +++ L +L+ Y
Sbjct: 859 ------QHTALASD---IRSSFEDSLADLLYEY 882
>gi|336467963|gb|EGO56126.1| hypothetical protein NEUTE1DRAFT_64449 [Neurospora tetrasperma FGSC
2508]
gi|350289794|gb|EGZ71019.1| RdRP-domain-containing protein [Neurospora tetrasperma FGSC 2509]
Length = 1350
Score = 206 bits (524), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 170/639 (26%), Positives = 291/639 (45%), Gaps = 118/639 (18%)
Query: 264 GLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQ 323
GL + + LVTP+++ GPE+ NR++R +P+ D+FLR+ F +ED L+ +
Sbjct: 408 GLTKIYRALVTPTRIELHGPELEAKNRILRKFPEHQDHFLRVQFGEEDGQDLF---FNSA 464
Query: 324 ISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA-----SRPEL 378
+S IY+R L NGI +G + + L FS+S R ++LW+ A R +L
Sbjct: 465 VSMDA------IYQRFKDVLTNGISVGGRVYRFLGFSHSSLRAHSLWLAAPFIYNGRLQL 518
Query: 379 TAADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN------------------- 419
A +I E +GDF IK+ + AAR+GQ+F+ + ++ +D++
Sbjct: 519 -ANNIIEGLGDFGNIKSPARRAARIGQAFSETPYSVSLDTHGIDVIRQRDIKRNERVFSD 577
Query: 420 -IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK-------------VTLRNNMFKYKS 465
+G IS E + ++ + P+ Q+R+ G K + +R++M K++S
Sbjct: 578 GVGIISQGALEVIHREIPESKGYPNCLQVRWAGAKGMLALDARLPGRQICIRDSMEKFRS 637
Query: 466 E-----------STSLDILANSKYQREGVARLRLDNVFERKQREVVARLDAILTDSSKVQ 514
S + ++ N + + F + Q + + RL AI + V
Sbjct: 638 RDEEHLEICDMASKPIPLMLNRQMIKILEDMGAPAKWFMKLQEKELQRLRAITDNVQNVA 697
Query: 515 EALELMSSAENTNV---LKEL--LNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQ 569
L+L ++ ++ LK+L +N Y+ D FL + + L L+ +ARI +
Sbjct: 698 TFLKLQCVGDSVHLSQFLKDLDKMNIDYRRDQ--FLRGIVEAVVLRELRLLKHKARIPVP 755
Query: 570 NGQAMMGCLDEKGTLEYGQ------------------GLMVVAKKPCLHPGDMRVLRAVD 611
G + G +DE G L G+ G +VV + P LHPGD+++ V
Sbjct: 756 YGVTLFGVMDETGLLREGEVYVTFETVDGRFKGPPTAGPVVVTRSPALHPGDIQIAYNVI 815
Query: 612 VPALH---HMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPA 668
PA H + +C++F GER ++ SG D DG+ + V WD + L+ P A P
Sbjct: 816 PPAGHPLRELKNCIVFSQNGERDLPSQLSGGDLDGDTFNVIWDQRIVSTLRTFPAADYPR 875
Query: 669 PEKI-LARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSI 727
E + L R+V +D+ ++F +++ D LG+I H++ A + + C L L S
Sbjct: 876 VEPLKLNREVESKDMADFFVEFMKADHLGVIAVRHMILADERDEGTLDADCLKLAALHSK 935
Query: 728 VGDFSKTGVAATIPSRLRVKIY-PDFM------EKQDKT--------------------- 759
DFSK+G+ I R +Y PDF+ + DK+
Sbjct: 936 AVDFSKSGIHVDITELPRPPMYRPDFLVNGPDIKIHDKSTIDMEEQYLKQDDDDGDDTPR 995
Query: 760 --WYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFY 796
+Y+S+ I+G+L+R V+ T IK G + F+
Sbjct: 996 YKYYKSEKILGHLFRAVDEKKIWTKNIKLEVPSGGVPFW 1034
>gi|453081039|gb|EMF09089.1| RdRP-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 1253
Score = 206 bits (523), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 171/623 (27%), Positives = 268/623 (43%), Gaps = 132/623 (21%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
+++++VTP+ + GPE +NRV+R + DNF+R+ F DED G+ +
Sbjct: 438 IHRVVVTPTGIRLEGPEPEPTNRVLRLHAQNTDNFVRMVFQDEDGGR---------VKFD 488
Query: 328 NGERRTRIY-ERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA----SRPELTAAD 382
RIY ER L GI I K F L FS+S R + W A + + A
Sbjct: 489 WSSDYQRIYHERFQGILDKGITIAGKSFTFLGFSHSSLRSQSCWFMAPFVKAGSLMFAEK 548
Query: 383 IRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN------------------IGKIS 424
+ + +G+F I+ K AAR+GQ+F + ++ + + G IS
Sbjct: 549 VIKELGNFSGIRTPAKCAARIGQNFTDTNTSVRLQRDQVFELAEVVRNGHDFADGAGTIS 608
Query: 425 AELAETVAKKCGYA-IYTPSAFQIRYGGYK-------------VTLRNNMFKYKS---ES 467
L E V K G + P+A QIR+ G K + LRNNM KY + +
Sbjct: 609 KGLLEEVWKVYGTKRMLKPTALQIRFQGAKGMVAQDTRLPGKRLMLRNNMRKYLTGADDH 668
Query: 468 TSLDILANSKYQREGVARLRLDNVFERKQREVVARL----DAILTDSSKVQEALELMS-S 522
L+I G A L + R +++ L + + +K E L +M+ S
Sbjct: 669 MDLEIC--------GAAFRPLPMILNRGFIKILEDLAVPEQSFINLQNKAMERLRMMTQS 720
Query: 523 AENTNVL----------------KELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARI 566
A NT L + L G + FL + S L +++ R RI
Sbjct: 721 AINTGTLLDEVHTSKASGLPSLIRYLGQIGLDYHHDDFLYAAVELAVISELRDIKHRGRI 780
Query: 567 FIQNGQAMMGCLDEKGTLEYGQGLMV------------------VAKKPCLHPGDMRVLR 608
+ G + G DE G L+ G+ ++ + + P LHPGD+++ +
Sbjct: 781 PVPKGVTLFGVPDETGYLKEGEIFVITERGPTGGKEILVRDKVIITRSPALHPGDIQLAK 840
Query: 609 AVDVP---ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAY 665
AVDVP + + + V+F G+R ++ SG D DG++Y V WD IP + + P Y
Sbjct: 841 AVDVPPGNSNRQLSNVVVFSKWGQRDLPSKLSGGDLDGDLYNVIWDETLIPWMIYAPAQY 900
Query: 666 TPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLS 725
P L RDVT +D+ ++F ++ ND LG+I N H+ A P + C L L+
Sbjct: 901 PRVPPVELPRDVTRKDMSDFFVTFMENDKLGLIANQHLQLADQRPMGTLDPDCIKLAALA 960
Query: 726 SIVGDFSKTGVAATIPSRLR-VKIYPDFM------------------------------- 753
S D+SKTG+ A + + R K PD+M
Sbjct: 961 STAVDYSKTGIPANMGTAPRPAKFKPDYMAPNPRVVFSQEGLLDLEDEDFAPDEAFDTID 1020
Query: 754 -EKQDKTWYESQHIVGNLYREVN 775
E++ +YESQ ++G LYR ++
Sbjct: 1021 AERRPMRYYESQKVLGILYRSID 1043
>gi|408389379|gb|EKJ68835.1| hypothetical protein FPSE_11001 [Fusarium pseudograminearum CS3096]
Length = 1277
Score = 206 bits (523), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 170/623 (27%), Positives = 272/623 (43%), Gaps = 124/623 (19%)
Query: 266 IYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQIS 325
I+V K LVTP+++ GPE NRV+R Y D D FLR+ F +ED L P++
Sbjct: 438 IWVFKALVTPTRLLLDGPEAESKNRVLRKYADYNDYFLRVLFCEEDGQDLR---FHPKVD 494
Query: 326 STNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA----SRPELTAA 381
+ IY + + +GI I +KF+ L FS+S R ++ W A +L +
Sbjct: 495 NEP------IYSQFRRMMDHGIQIAGRKFDFLGFSHSSLRSHSAWFSAPFVDKDHQLQSP 548
Query: 382 D-IRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN--------------------- 419
+ I + +GDFR+I+ K AAR+GQ+F+ + A+ + N
Sbjct: 549 EAILQALGDFRDIRVPAKCAARIGQAFSETPYAVPISENNIVPRYIPDVKSEDGSRVFSD 608
Query: 420 -IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYKVTL--------------RNNMFKYK 464
+G IS E E++ P+ QIR+GG K L + +M K+K
Sbjct: 609 GVGTISQEALESIWPYLSMNSAAPTCLQIRWGGCKGMLSLDTRLEGKVFCIRQESMMKFK 668
Query: 465 SESTS-LDIL-ANSKYQREGVARLRL---------DNVFERKQREVVARLDAILTDSSKV 513
SE T L I SK R + R + D F Q + L + D++
Sbjct: 669 SEDTGELGICDTASKPLRLVLNRQMIKILEDMGTRDEWFFELQNNALDILRNVTADATNT 728
Query: 514 QEALELMSSAENTNVLK-----ELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFI 568
LE + N + + E ++ Y+ D FL + L L+ +ARI +
Sbjct: 729 SSFLEHHAIGINMGLPRLVKQLEKMDIDYRRDK--FLKAAVEHVVLRELRLLKHKARIPV 786
Query: 569 QNGQAMMGCLDEKGTLEYGQ-----------------------GLMVVAKKPCLHPGDMR 605
NG + G +DE G L+ G+ G ++V + P LHPGD++
Sbjct: 787 DNGVTLFGIMDETGFLKEGEVYVTYDKTYGRNNGRGIKSTLTDGEIIVTRSPALHPGDIQ 846
Query: 606 VLRAVDVP---ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQP 662
+++ V P +L + +C++F KG+R + SG D DG+IY + WD + +P F+P
Sbjct: 847 LVKQVTPPQGHSLRSLQNCIIFSQKGKRDLPSMLSGGDLDGDIYNIIWDPEAMPSRVFRP 906
Query: 663 TAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLV 722
Y + L R V +D+ ++F +++ D LG+I HV+ A ++ C L
Sbjct: 907 ADYPRVTPQPLDRQVEPKDIADFFINFMRTDILGVIATRHVILADYNDLGSIDRDCIALA 966
Query: 723 KLSSIVGDFSKTGVAATIPSRLRV-KIYPDF----------------------------- 752
+L S DFSKTG+ + + R + PDF
Sbjct: 967 ELHSTAVDFSKTGIPVNVKALPRAPRFRPDFLATAPPLKLYDKGQLAHIGEDDEMDNADD 1026
Query: 753 MEKQDKTWYESQHIVGNLYREVN 775
M + +Y+S+ I+G LYR V+
Sbjct: 1027 MARTKTNYYQSEKILGQLYRNVD 1049
>gi|241620373|ref|XP_002408656.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
gi|215503015|gb|EEC12509.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
Length = 529
Score = 206 bits (523), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 158/488 (32%), Positives = 221/488 (45%), Gaps = 101/488 (20%)
Query: 383 IRERMGDFREIKNVTKYAARLGQSFASS-------REALHVDSNI--------------- 420
+R +GD I+ +KY ARLGQ+F+ S + VD +I
Sbjct: 1 VRAAIGDLSSIRVPSKYMARLGQAFSQSMGYVTVPQACTRVDRDILLKGRKPGIKYNFSD 60
Query: 421 --GKISAELAETVAKKCGYAIYTPSAFQIRYGGYK-------------VTLRNNMFKYKS 465
G+IS + V A PSA QIRYGG K + R++MFKY S
Sbjct: 61 GVGRISPSVLARVHAALP-AEGKPSAIQIRYGGCKGMLVLDPTLEGDQIVFRDSMFKYPS 119
Query: 466 ESTSLDILANS-----------------KYQREGVARLRLDNVFERKQREVV-ARLDAIL 507
+S L IL S K R GV + D VF R Q++ + LD++
Sbjct: 120 QSEELFILKTSRPRVVKLNRPMITILSQKMTRSGVQDIE-DGVFMRMQQDCLEPYLDSLF 178
Query: 508 TDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIF 567
D A L S + +EL G AEPF + H L +L+ + I
Sbjct: 179 NDKGT---AALLQSESSLRMPYRELAEAGLDLHAEPFFRSLLWALHHRCLKDLKDKMNIL 235
Query: 568 I--QNGQAMMGCLDEKGTLEYGQ------------------------------GLMVVAK 595
+ + G+ M G LDE TL+YGQ G ++V K
Sbjct: 236 VPPRFGRTMFGVLDETATLQYGQVYVRYSTDLDRFGPDDESQYRLCTTFRLRAGRVMVTK 295
Query: 596 KPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRI 655
PC+HPGD+R+L AVDVPAL H+ DCV+FP G+RPH +E +GSD DG+ Y V W
Sbjct: 296 NPCIHPGDIRLLEAVDVPALSHIRDCVVFPQIGKRPHPDEMAGSDLDGDEYSVIWYE--- 352
Query: 656 PPLQFQ----PTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPD 711
PL F+ P + + V +ED+ ++ YIVND +G++ +AH+ +A
Sbjct: 353 -PLLFKRNDDPMDFYSSEALEKEGTVQVEDMVDFMCTYIVNDIVGLMGSAHLAWADLLKQ 411
Query: 712 KAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQ-DKTWYESQHIVGNL 770
S RC L K S DF+KTG + + + YPDFMEK +K Y S+ +G L
Sbjct: 412 GVKSQRCLVLAKKCSECVDFAKTGSSTRLAQSEKPPRYPDFMEKHAEKYTYPSKRALGLL 471
Query: 771 YREVNGIA 778
YR + G+
Sbjct: 472 YRNLKGMV 479
>gi|384499712|gb|EIE90203.1| hypothetical protein RO3G_14914 [Rhizopus delemar RA 99-880]
Length = 595
Score = 204 bits (520), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 127/399 (31%), Positives = 209/399 (52%), Gaps = 38/399 (9%)
Query: 503 LDAILTDSSKVQEALELM----SSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLL 558
+D IL ++ +EA+ ++ A +++ ++ G+ +P++ + F + L
Sbjct: 8 IDKIL---ARPEEAIRVLLNNADEAGTAHMMASIIQAGFLERGDPYIKNLLNLFRVNVLK 64
Query: 559 ELRTRARIFIQNGQAMMGCLDEKGTLEYGQ-------------------GLMVVAKKPCL 599
EL+ +A+I + G ++G +DE GTL+ G+ G V + PC
Sbjct: 65 ELKKKAKILVPQGAFLLGVMDETGTLDEGEVYIQVWDNSHSGTMKQVITGECAVFRNPCF 124
Query: 600 HPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ 659
HPGD+RV+ AVD P L H+V+ V+FPAKG R + CSG D DG+ Y + WD IP +
Sbjct: 125 HPGDVRVVTAVDRPNLSHLVNVVVFPAKGYRDIPSMCSGGDLDGDDYTIFWDPKLIPTRK 184
Query: 660 -FQPTAYTPA-PEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNR 717
P YT + P K+ DV I D++ +F +YI ND+LG I NAH+ A AM R
Sbjct: 185 DVAPMDYTASDPRKV--EDVKIRDIQRFFVNYINNDNLGQIANAHLATADFSEKGAMDGR 242
Query: 718 CPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGI 777
C L +L S DF K+G AT+ L V+ +PDFM+K+DK Y S+ ++G+++R ++
Sbjct: 243 CILLAQLHSEAVDFPKSGKPATLSEDLIVRTFPDFMQKKDKESYASKKVLGHIFRSID-- 300
Query: 778 APSTTTIKSF-AKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKT 836
+ K++ +K YDT M ++G + R +Y+ L LM+ G++T
Sbjct: 301 ---KSDYKNYMSKLTEEAVYDTRMHLSGMAYYIGE--ARTLRRDYNRDLLALMNQNGVQT 355
Query: 837 EAEMLSRCIMEMAKSFDKKRDLEAISFSVRSLRKEARAW 875
EAE++S I++ K K E ++++++ W
Sbjct: 356 EAEIMSGYIIKWLKKGKSKTRYEQHDSTMKAIKSFKDLW 394
>gi|17508365|ref|NP_493057.1| Protein RRF-2 [Caenorhabditis elegans]
gi|13655331|emb|CAC35914.1| Protein RRF-2 [Caenorhabditis elegans]
Length = 1579
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 188/728 (25%), Positives = 315/728 (43%), Gaps = 163/728 (22%)
Query: 261 LDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVL 320
++ G V K++ TP++V + PE+ + NRV+R++ + + LR++F D++ K+ +
Sbjct: 443 IEEGYQRVRKVIFTPTRVIYTPPEMIMGNRVLRNFDRDGTHVLRVTFRDDNNRKMRANAT 502
Query: 321 SPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA------- 373
+ V L +GIV+ ++ F L S+SQ R+N +
Sbjct: 503 GELLDIC-----------VKKYLEHGIVVANRDFGFLGCSSSQMRDNGAYFMVKNTDNRH 551
Query: 374 -------SRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSR---EALHVDS----- 418
S+ + +R ++G+F +I+N+ K ARLGQ F SR +L D+
Sbjct: 552 KNACKMNSKFKPNIDSVRNQLGNFLQIENIPKLMARLGQCFTQSRLTGVSLGPDNYCLTH 611
Query: 419 -----------------NIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYKVTL----- 456
+G +S E A+ V++ + PS FQ RY G K L
Sbjct: 612 DLSGGRSSNGSEYTFSDGVGMMSYEFAQEVSRLMSFGRSVPSCFQFRYRGMKGVLAIDPL 671
Query: 457 -----------------------RNNMFKYKSESTSLDILANSKYQREGVARLR------ 487
R + K++ + D + KY + L
Sbjct: 672 LDKERNWQEKHGISLSKNIKCVFRPSQIKFEGKQILGDQVEMVKYSSPVLVALNKPLINI 731
Query: 488 LDNVFERK----QREVVARLDAILTDSSKVQEALELMSSAENTNVLKELLN--------- 534
LD V E + R + +R++ ++ D + A ++ A N LKE
Sbjct: 732 LDQVSEMQSLECHRRITSRIEELM-DLQTLSFAKQMTDEACFRNKLKEFPRRIDIDYLRT 790
Query: 535 -CGYKPDAEPFLSMMPQT---FHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ-- 588
G+ EPF + + F + L + + +I + G++M+G +DE G L+YGQ
Sbjct: 791 IWGFTLSNEPFFRSLVKASIKFAITKQL-FKEQIQIPSELGRSMLGVVDETGILQYGQVF 849
Query: 589 ---------------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDC 621
G +++ K P + PGD+R+ AVD+P LHH+ D
Sbjct: 850 VQYTKNHRNILPPRDSNRKVLGSEIVTGTVLLTKNPGIVPGDVRIFEAVDIPELHHLCDV 909
Query: 622 VLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIED 681
V+FP G RPH +E +GSD DG+ Y V WD + L+ A+ A EK L + ED
Sbjct: 910 VVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQKLL--LERNEEAFDFAVEKNL-QTYEWED 966
Query: 682 VEEYFAD----YIVNDSLGIICNAHVVYAYSEPDKAMSNR-CPDLVKLSSIVGDFSKTG- 735
+++ D Y+ D +G+I N+H+ ++ +++R C +L K S DFSK+G
Sbjct: 967 IDDLMRDVYVEYLKKDLVGLIANSHL---HNSDQYGLTSRVCMNLAKKSCQAVDFSKSGK 1023
Query: 736 --------------VAATIPSRLRVKIYPDFMEKQDKT-WYESQHIVGNLYREVNGIAPS 780
IP R + PD+ D Y S + G L+RE GI +
Sbjct: 1024 PPDELQTTWKTDDATGEMIPPE-RAERVPDYHVGSDHMPKYVSPRLCGKLFREFQGIDNA 1082
Query: 781 TTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEM 840
+ +++ ++ D + V+GF+E D K Y+ +L + MD YGI++E E+
Sbjct: 1083 MKISEEKSEQYKIEV-DESIRVDGFEEYME--DAKKQLASYNGQLKSTMDTYGIQSEGEI 1139
Query: 841 LSRCIMEM 848
+S CI+EM
Sbjct: 1140 MSGCIIEM 1147
>gi|310795671|gb|EFQ31132.1| RNA dependent RNA polymerase [Glomerella graminicola M1.001]
Length = 1313
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 173/624 (27%), Positives = 273/624 (43%), Gaps = 125/624 (20%)
Query: 266 IYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQIS 325
+ V K +VTP+++ GPE NRV+R +PD F+R++F DED G L+ +P++S
Sbjct: 440 VQVFKAMVTPTRITLHGPEPEPLNRVLRRFPDHTSYFMRVTFCDEDGGDLF---FNPRVS 496
Query: 326 STNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTA----- 380
+I++R L GI I + ++ L FS+S R ++ W A + T
Sbjct: 497 YD------QIFDRYRKVLNGGIPIAGRVYQFLGFSHSSLRSHSAWFSAPFVDSTGKLQLY 550
Query: 381 ADIRERMGDFREIKNVTKYAARLGQSFA--------SSREALHVD--------------- 417
A+I + +GDF I+ K AAR+GQ+F+ S H D
Sbjct: 551 ANIIKSLGDFDHIQIPAKCAARIGQAFSETPAFINLSEHRIRHWDIPDVKSHDGKIQRVF 610
Query: 418 -SNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYKVTL--------------RNNMFK 462
+G IS E E V + P+ QIR+GG K L R +M K
Sbjct: 611 SDGVGTISQEAIELVWPRLPQRSLIPTCLQIRWGGVKGMLSLESRLSGRSICIRRESMEK 670
Query: 463 YKS-ESTSLDIL-ANSKYQREGVAR--------LRLD-NVFERKQREVVARLDAILTDSS 511
+ S + +L+I A SK + + R L +D N F R Q+ + RL A+ D+
Sbjct: 671 FPSTDVQNLEICDAASKPLKLVLNRQMIKIMEDLGVDKNFFLRLQKNELDRLRAVTADAY 730
Query: 512 KVQEALELMSSAEN---TNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFI 568
L L +K L G + FL + ++ L L+ +ARI +
Sbjct: 731 NTGTFLHLQGVGSAFFLPTFIKSLEKYGIDYRRDDFLRAVVESTVLRELRLLKHKARIPV 790
Query: 569 QNGQAMMGCLDEKGTLEYGQ----------------------GLMVVAKKPCLHPGDMRV 606
G + G +DE G L+ G+ G ++V + P LHPGD+++
Sbjct: 791 PQGATLFGVMDETGFLKEGEVYVCYDTYKSPGKAPTERSLRDGRVLVTRSPALHPGDIQL 850
Query: 607 LRAVDVPALH---HMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPT 663
P H ++ +CV F G+R ++ SG D DG++Y + WD +P +
Sbjct: 851 ANMRTPPPGHPLRNLRNCVAFSQHGQRDLPSQLSGGDLDGDLYNIIWDKQAMPRWICKAA 910
Query: 664 AYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVK 723
Y + L R VT +D+ +F D++ +D LG+I H++ + + + M C L +
Sbjct: 911 DYPRVTPEPLGRPVTRDDMANWFVDFMKSDVLGLIATRHLILSDQDQEGTMGRNCLKLAE 970
Query: 724 LSSIVGDFSKTGVAA---TIPSRLRVKIYPDFM------EKQDKT--------------- 759
L S DFSKTG+A IP R + PDF+ + D+T
Sbjct: 971 LHSTAVDFSKTGIAVEQREIPKAPRFR--PDFLAPAPPAQLYDRTHIDFIDEDEAVDDDE 1028
Query: 760 --------WYESQHIVGNLYREVN 775
+Y+S++I+G LYR VN
Sbjct: 1029 DAQGPNHKYYKSENILGQLYRNVN 1052
>gi|302907308|ref|XP_003049617.1| hypothetical protein NECHADRAFT_123067 [Nectria haematococca mpVI
77-13-4]
gi|256730553|gb|EEU43904.1| hypothetical protein NECHADRAFT_123067 [Nectria haematococca mpVI
77-13-4]
Length = 1261
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 182/681 (26%), Positives = 291/681 (42%), Gaps = 129/681 (18%)
Query: 266 IYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQIS 325
++V K LVTP++V GP+ NRV+R +PD D+FLR+ F DED L +P+I
Sbjct: 426 VWVFKALVTPTRVLLHGPDAESKNRVLRMFPDNNDSFLRVIFCDEDGQDLN---FNPRID 482
Query: 326 STNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASR------PELT 379
+ + + R + +GI I +K+ L FS+S R ++ W FAS T
Sbjct: 483 NED------TFSRYRKVMDDGIDIAGRKYTFLGFSHSSLRSHSAW-FASPFVDGNYQSQT 535
Query: 380 AADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN-------------------- 419
+ I E +GDF++I+ K AAR+GQ+F+ + A+ + N
Sbjct: 536 ISVILEALGDFQDIRVPAKCAARIGQAFSETPYAVPLFENSITTRHIPDIKTADGSRVFS 595
Query: 420 --IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYKVTL--------------RNNMFKY 463
+G IS + E V P+ QIR+GG K L + +M K+
Sbjct: 596 DGVGTISQDALEDVWMYLPMRSAAPTCLQIRWGGCKGMLSLDTRLEGKTFCIRKESMMKF 655
Query: 464 KSES-TSLDILANSKYQREGVARLRLDNVFERK----------QREVVARLDAILTDSSK 512
S T L I S V ++ + E Q + + L + +
Sbjct: 656 PSNDLTELGICDTSSKPLRLVLNRQMIKILEDMGTQNDWFFDLQNKALNVLRGVTASAHN 715
Query: 513 VQEALELMSSAENTNV---LKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQ 569
LE + N + +K+L G + FL + L L+ +ARI ++
Sbjct: 716 TSTFLEYQTIGVNMGLPKLVKQLDRMGIDYRRDKFLRSAVEHVVLRELRLLKHKARIPVE 775
Query: 570 NGQAMMGCLDEKGTLE-----------YG------------QGLMVVAKKPCLHPGDMRV 606
G + G +DE G L+ YG G+++V + P LHPGD++V
Sbjct: 776 KGVTLFGVMDETGFLKERQVYVTYDKTYGVKNGRRINATLEDGIILVTRSPALHPGDIQV 835
Query: 607 LRAVDVPALH---HMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPT 663
V P H ++ +C++F KG+R ++ SG D DG++Y + WD +P F+P
Sbjct: 836 AEMVTPPKGHPLRNLQNCIVFSQKGDRDLPSQLSGGDLDGDLYNIIWDERAMPEKVFEPA 895
Query: 664 AY---TPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPD 720
Y TP P L R VT +D+ ++F +++ D LG+I HV+ A S + C
Sbjct: 896 DYPRVTPVP---LDRPVTPKDIADFFINFMRTDILGMIATRHVMLADSHDLGTLHPECIS 952
Query: 721 LVKLSSIVGDFSKTGVAATI-----PSRLR---------VKIY----------------P 750
L ++ S DFSKTG+ + P R R +K+Y
Sbjct: 953 LAEMHSTAVDFSKTGIPVEVKKLPKPPRFRPDFLAMAPPLKLYDLGQIDHIGDPEEYDED 1012
Query: 751 DFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAM 810
D M + +Y+S I+G+LYR V+ I + G +D + + + V
Sbjct: 1013 DMMARAKPKYYKSTKILGHLYRSVDENKIWHENIHRKIETGGPSVWDQLLTIVENEIVKY 1072
Query: 811 QFD-GFKYRTEYDNKLGNLMD 830
+ D +K RTE + N+ D
Sbjct: 1073 KLDIDWKRRTEEAWNIRNVYD 1093
>gi|396482889|ref|XP_003841572.1| similar to rna-dependent rna polymerase [Leptosphaeria maculans JN3]
gi|312218147|emb|CBX98093.1| similar to rna-dependent rna polymerase [Leptosphaeria maculans JN3]
Length = 1248
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 168/564 (29%), Positives = 249/564 (44%), Gaps = 89/564 (15%)
Query: 270 KILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNG 329
K +TP+ + GP+ +SNRV+R Y + F+R+ F DED S P+ S
Sbjct: 447 KATITPTGMLLRGPDWDVSNRVLRKYGKHTECFMRVFFADEDG---LSVFFDPRAS---- 499
Query: 330 ERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA----SRPELTAADIRE 385
+ R+YER LRNGI + ++F+ L FS++ R + W + A DI E
Sbjct: 500 --QDRVYERFRGVLRNGITVAGRRFDFLGFSHASLRSHQAWFMTPFIKDGISICARDIIE 557
Query: 386 RMGDFREIKNVTKYAARLGQSFASS--------------------REALHVDSNIGKISA 425
+GDF I+ + AAR+GQ+F+ + R + G IS
Sbjct: 558 DLGDFSHIRCSARCAARIGQAFSDTIFSVRVPDSAYVTESKVDVKRNGRYFSDGCGTISL 617
Query: 426 ELAETV--AKKCGYAIYTPSAFQIRYGGYKVTL-------------RNNMFKYKSESTSL 470
EL V A P+ QIRY G K L R +M KY ++
Sbjct: 618 ELMRKVWNALPPERREQRPTVLQIRYRGAKGVLSLDTSLVGEQLHVRQSMTKYIAKEGWK 677
Query: 471 DI-LANSKYQ-------REGVARLRLDNVFERK----QREVVARLDAILTDSSKVQEALE 518
D+ L + Y+ + + L V ER Q E V L I LE
Sbjct: 678 DLELCGAAYKPLTVFLNHQFIKILEDLGVPERNFKAIQNEAVDTLKLITEHPINAASFLE 737
Query: 519 LMSSA--ENTNVLKELLN-CGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMM 575
S+ T L EL++ G A+ FL+ + + SNL L+ RARI I G +
Sbjct: 738 YSHSSVYARTPRLFELMHQIGLSFHADRFLTDIVEVAAMSNLRSLKYRARIPISQGYLLY 797
Query: 576 GCLDEKGTLEYGQ---------------------GLMVVAKKPCLHPGDMRVLRAVDVP- 613
G +DE G L+ G+ +++ + P LHPGD+++++AVDVP
Sbjct: 798 GIMDETGILKEGEVYVATKSHDAIGHKSRKILIGDRVIITRAPALHPGDVQIVKAVDVPE 857
Query: 614 --ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEK 671
L + +CV+F +G R ++ SG D DG+++ + +D IP P Y P K
Sbjct: 858 YSPLRALHNCVVFSQQGARDLPSQLSGGDLDGDLFHIIYDSRLIPDFTVPPADYKSEPPK 917
Query: 672 ILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDF 731
L R V + D+ ++F +Y+ D LG I N H + A +P+ C L +L+S DF
Sbjct: 918 DLGRPVQVNDMVDFFVEYMNMDRLGQISNKHKIRADIKPNGTRDPDCILLAQLASDAVDF 977
Query: 732 SKTGVAATIPSRLRVK--IYPDFM 753
SK+G A I R I PDFM
Sbjct: 978 SKSGNPADINKVPRGSDWIRPDFM 1001
>gi|393908637|gb|EJD75145.1| CBR-RRF-1 protein [Loa loa]
Length = 1689
Score = 203 bits (517), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 189/701 (26%), Positives = 297/701 (42%), Gaps = 138/701 (19%)
Query: 264 GLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQ 323
G V K ++TP+++ PE+ + NRV+R + + D LR+ F D+D L +
Sbjct: 582 GFQRVRKAVITPTRMLLVVPELLMGNRVLREFDEHGDRALRIQFRDDDGTHLRRNKVGSY 641
Query: 324 ISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADI 383
I T V + L +GI I + F LA SNSQ R+N + F + I
Sbjct: 642 IIETT----------VHNCLLHGIYISNSHFVYLASSNSQMRDNGCYFFNDGDDGRVGKI 691
Query: 384 RERMGDFREIKNVTKYAARLGQSFASSREALHV-------------------------DS 418
RE++G F + N+ K +R+GQ F S+E+ V
Sbjct: 692 REKLGKF-DRTNIPKLMSRMGQCFTQSKESDVVLKRKKYNKTYDVIGGKDSCGEPFIFSD 750
Query: 419 NIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYKVTL-------------RNNMFKYKS 465
+GK+S + AE +AK G PS FQ R G K L N + K+
Sbjct: 751 GVGKLSEDFAERIAKDLGLNKCVPSCFQFRLRGLKGVLSVDPALRQRRLWAECNDVEDKN 810
Query: 466 EST----SLDIL---ANSKY---QREGVARLR----------------LDNVFERK---- 495
T LD+L + K+ ++E + ++ LD V + +
Sbjct: 811 RKTEKVNDLDVLFRPSQDKFHAPRKEMIEIVKYSSPTPVCLNRPFINILDQVSDMQGFDV 870
Query: 496 QREVVARLDAILTDSSKVQEALELMSSAENTNVLKEL----------LNCGYKPDAEPF- 544
R +V R+ +L D +Q + LMS + L E L G+ EPF
Sbjct: 871 HRRIVHRIHGLL-DRQLLQLSDALMSENKCRERLAEFPRRINVQYLSLARGFTLTQEPFF 929
Query: 545 --LSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ-------------- 588
L + F L + + +I G+ M G LDE G L+YGQ
Sbjct: 930 RGLLIASVRFTLQKQL-FKEQIQIPANLGRTMFGILDETGLLQYGQVFVQFTNNVSLKTP 988
Query: 589 ----------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSG 638
G +++ K P + GD+RV A+D+P L H+VD V+FP G RPHT+E +G
Sbjct: 989 SKAAAKTIVKGPVLITKNPSIVAGDVRVFEAIDLPELRHLVDVVVFPQHGPRPHTDEMAG 1048
Query: 639 SDQDGEIYFVCWDHDRIPPLQFQPTAYTPA--PEKILARDVTIEDVEEYFADYIVNDSLG 696
SD DG+ Y V WD + +P ++ P +L D + ++ ++ YI+ DS+G
Sbjct: 1049 SDLDGDEYSVIWDDQMLFDHNEEPMDFSKLVRPPDLLEEDEVVREMRRFYVKYIMQDSVG 1108
Query: 697 IICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVA-------------ATIPSR 743
+I NA + A S+ S+ C + + S DF KTG I
Sbjct: 1109 VIANAFL--ANSDMFGIASDICTSIAEKHSQSVDFPKTGWPPRPLVKEWSKGPDGKIMPP 1166
Query: 744 LRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVN 803
R + +PDFM K + Y S +VG L+R + + TI + ++ + D +E +
Sbjct: 1167 ERPERWPDFMCKTHEPSYVSTRLVGQLFRRIR-LVHDVLTITAVSEGHSQIVVDPLLEYH 1225
Query: 804 GFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRC 844
G++ + + + Y + LMD YGI+ E ++ S C
Sbjct: 1226 GWE--SYENNANLNLIAYSAHIKALMDNYGIEDEYQLFSGC 1264
>gi|312082346|ref|XP_003143407.1| RNA dependent RNA polymerase [Loa loa]
Length = 1312
Score = 203 bits (517), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 189/701 (26%), Positives = 297/701 (42%), Gaps = 138/701 (19%)
Query: 264 GLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQ 323
G V K ++TP+++ PE+ + NRV+R + + D LR+ F D+D L +
Sbjct: 218 GFQRVRKAVITPTRMLLVVPELLMGNRVLREFDEHGDRALRIQFRDDDGTHLRRNKVGSY 277
Query: 324 ISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADI 383
I T V + L +GI I + F LA SNSQ R+N + F + I
Sbjct: 278 IIETT----------VHNCLLHGIYISNSHFVYLASSNSQMRDNGCYFFNDGDDGRVGKI 327
Query: 384 RERMGDFREIKNVTKYAARLGQSFASSREALHV-------------------------DS 418
RE++G F + N+ K +R+GQ F S+E+ V
Sbjct: 328 REKLGKF-DRTNIPKLMSRMGQCFTQSKESDVVLKRKKYNKTYDVIGGKDSCGEPFIFSD 386
Query: 419 NIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYKVTL-------------RNNMFKYKS 465
+GK+S + AE +AK G PS FQ R G K L N + K+
Sbjct: 387 GVGKLSEDFAERIAKDLGLNKCVPSCFQFRLRGLKGVLSVDPALRQRRLWAECNDVEDKN 446
Query: 466 EST----SLDIL---ANSKY---QREGVARLR----------------LDNVFERK---- 495
T LD+L + K+ ++E + ++ LD V + +
Sbjct: 447 RKTEKVNDLDVLFRPSQDKFHAPRKEMIEIVKYSSPTPVCLNRPFINILDQVSDMQGFDV 506
Query: 496 QREVVARLDAILTDSSKVQEALELMSSAENTNVLKEL----------LNCGYKPDAEPF- 544
R +V R+ +L D +Q + LMS + L E L G+ EPF
Sbjct: 507 HRRIVHRIHGLL-DRQLLQLSDALMSENKCRERLAEFPRRINVQYLSLARGFTLTQEPFF 565
Query: 545 --LSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ-------------- 588
L + F L + + +I G+ M G LDE G L+YGQ
Sbjct: 566 RGLLIASVRFTLQKQL-FKEQIQIPANLGRTMFGILDETGLLQYGQVFVQFTNNVSLKTP 624
Query: 589 ----------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSG 638
G +++ K P + GD+RV A+D+P L H+VD V+FP G RPHT+E +G
Sbjct: 625 SKAAAKTIVKGPVLITKNPSIVAGDVRVFEAIDLPELRHLVDVVVFPQHGPRPHTDEMAG 684
Query: 639 SDQDGEIYFVCWDHDRIPPLQFQPTAYTPA--PEKILARDVTIEDVEEYFADYIVNDSLG 696
SD DG+ Y V WD + +P ++ P +L D + ++ ++ YI+ DS+G
Sbjct: 685 SDLDGDEYSVIWDDQMLFDHNEEPMDFSKLVRPPDLLEEDEVVREMRRFYVKYIMQDSVG 744
Query: 697 IICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVA-------------ATIPSR 743
+I NA + A S+ S+ C + + S DF KTG I
Sbjct: 745 VIANAFL--ANSDMFGIASDICTSIAEKHSQSVDFPKTGWPPRPLVKEWSKGPDGKIMPP 802
Query: 744 LRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVN 803
R + +PDFM K + Y S +VG L+R + + TI + ++ + D +E +
Sbjct: 803 ERPERWPDFMCKTHEPSYVSTRLVGQLFRRIR-LVHDVLTITAVSEGHSQIVVDPLLEYH 861
Query: 804 GFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRC 844
G++ + + + Y + LMD YGI+ E ++ S C
Sbjct: 862 GWE--SYENNANLNLIAYSAHIKALMDNYGIEDEYQLFSGC 900
>gi|429863873|gb|ELA38280.1| RNA-dependent RNA polymerase [Colletotrichum gloeosporioides Nara
gc5]
Length = 1308
Score = 203 bits (516), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 166/645 (25%), Positives = 278/645 (43%), Gaps = 125/645 (19%)
Query: 267 YVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISS 326
+V K +VTP++V GPE+ NR++R + + D F+R+ F DED L+ +P+++
Sbjct: 439 WVFKAMVTPTRVTLHGPEMEPLNRILRKHRNHTDYFMRVQFCDEDGTDLW---FNPRVNY 495
Query: 327 TNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAA----- 381
+ ++ER + L GI + + ++ L FS+S R + W A + +
Sbjct: 496 ED------VFERYKNVLNKGIQVAGRIYQFLGFSHSSLRSHAAWFMAPFVDDSGEMQLYR 549
Query: 382 DIRERMGDFREIKNVTKYAARLGQSFASSREALHV-DSNI-------------------- 420
I + +GDF I+ K AAR+GQ+F+ + + + DS+I
Sbjct: 550 HIIKSLGDFEHIQIPAKCAARIGQTFSETPAFISLTDSDISAWNIPDIKSSIGGDDRVFS 609
Query: 421 ---GKISAELAETVAKKCGYAIYTPSAFQIRYGGYKVTL--------------RNNMFKY 463
G IS E E + + P+ QIR+GG K L R +M K+
Sbjct: 610 DGVGTISREALELIWPRLPRGSLIPTCLQIRWGGVKGMLSLDTRLPGRVMCIRRESMEKF 669
Query: 464 KSEST-SLDILANSKYQREGVARLRL----------DNVFERKQREVVARLDAILTDSSK 512
S+ T +L+I + + V ++ ++ F R Q+ + RL A+ D+
Sbjct: 670 PSQDTENLEICGGASKPLKLVLNRQMIKILEDLGVRNDFFLRLQKTELDRLRAVTADAYN 729
Query: 513 VQEALELMSSAEN---TNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQ 569
L + N + +K L G + FL + Q L L+ +ARI +
Sbjct: 730 TGTFLHMQGIGLNCFLPSFIKSLDKYGIDYRRDDFLRTVVQNVVLQELRLLKHKARIPVP 789
Query: 570 NGQAMMGCLDEKGTLEYGQ----------------------GLMVVAKKPCLHPGDMRVL 607
G + G +DE G L G+ G ++V + P LHPGD++++
Sbjct: 790 KGVTVFGVMDETGFLREGEVYIAYDTYRRPGRTSIDGSLRDGPVLVTRSPALHPGDIQLV 849
Query: 608 RAVDVPALH---HMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTA 664
+ PA H ++ +C+ F G R ++ SG D DG++Y + WD D +P + ++
Sbjct: 850 KMRTPPAGHPLRNLRNCIAFSQFGRRDLPSQLSGGDLDGDLYNIIWDRDAMPKVTYKAAD 909
Query: 665 YTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKL 724
Y L R V ED+ +F D++ +D LG+I H+V + +P+ + N C L L
Sbjct: 910 YPRVTPAALGRTVEREDMANWFVDFMQSDCLGLIATRHLVVSDQDPNGTLGNDCLTLAGL 969
Query: 725 SSIVGDFSKTGVAAT---IPSRLRVKIYPDFM-----------------------EKQDK 758
S DFSKTG+ IP R + PDF+ E+ D+
Sbjct: 970 HSTAVDFSKTGIPVDTKEIPKAPRFR--PDFLAPAPPAHIFDRNEIEFIGKNETLEEDDE 1027
Query: 759 ------TWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYD 797
+Y+S+ I+G LYR V+ T I+ +D
Sbjct: 1028 DMLPPHQYYKSEKILGILYRNVDEKHIWTEDIQRVVTRAGPSVWD 1072
>gi|346977552|gb|EGY21004.1| RNA-dependent RNA polymerase [Verticillium dahliae VdLs.17]
Length = 1444
Score = 202 bits (515), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 172/622 (27%), Positives = 273/622 (43%), Gaps = 132/622 (21%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
V K++VTP+ +Y P + SNRV+R Y D FLR+ F DE ST ++
Sbjct: 490 VRKVVVTPTTIYLSSPGVEASNRVIRKYQHVSDRFLRVQFTDELTRGRISTRAKMELDHY 549
Query: 328 NGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERM 387
+++RV T+ NGI IGD+ ++ LAF NSQ RE + F L ++R+ M
Sbjct: 550 -------VFKRVYLTMINGIRIGDRHYKFLAFGNSQIRECGAYFFCETAHLKCTEMRQWM 602
Query: 388 GDFREIKNVTKYAARLGQSFASSREALHVDS------------------NIGKISAELAE 429
G+F I V K+AARLGQ F+++RE + + +GKIS+ LA
Sbjct: 603 GNFNHIHIVAKFAARLGQCFSTTREIRSIRAPNIQIIPDIERNGHCFTDGVGKISSFLAS 662
Query: 430 TVAKKCGY-AIYTPSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLDILAN 475
V ++ G + TPSAFQ R GG K V +R + K+K+ L+I+
Sbjct: 663 MVLEEMGLETVETPSAFQFRMGGCKGVLAVWPEAKGMYVHIRKSQEKFKATFNGLEIIRC 722
Query: 476 SKYQREGVARLRL---------DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENT 526
+++ + R + VF + + + + D L +T
Sbjct: 723 ARFSVATLNRQTITILTSLGIKSEVFMDLLQRQLHGYEKAMNDQGAAAVLLGRHIDENHT 782
Query: 527 NV-LKELLNCGY-KPDA-EPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGT 583
++ L++L+N G+ + D EPF+ +
Sbjct: 783 SLALRDLINWGFMRHDVQEPFVLTI----------------------------------- 807
Query: 584 LEYGQGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDG 643
L+ +G+ +V + P LHPGD+RV+ AVDVP L HM + V+FP+ G+ + SG D DG
Sbjct: 808 LQLWRGVCIVGRNPSLHPGDVRVVEAVDVPQLRHMKNVVVFPSTGDVDVPSMLSGGDLDG 867
Query: 644 EIYFVCWDHDRIPPL-QFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAH 702
+ +FV WD + IPP+ F+P K++ RDV +D+ SL
Sbjct: 868 DDFFVIWDPNLIPPVWNFRPMDNVAPQPKVVDRDVNAKDL-----------SL------- 909
Query: 703 VVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFM-EKQDK-TW 760
L KL S D+ K+G A + LR + +P FM E+++K +
Sbjct: 910 -----------------QLAKLHSKAVDYVKSGDPAELGRELRARRWPHFMGERRNKNSL 952
Query: 761 YESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTE 820
Y S +G +Y V + + K F + +F D V K+ + ++
Sbjct: 953 YHSYTALGQIYDRVQDVPFNPLYEKKFDRRILSRFAPIDNAV--LKQAR------RLKST 1004
Query: 821 YDNKLGNLMDYYGIKTEAEMLS 842
YD + LM + TE E+ +
Sbjct: 1005 YDTAMRRLMAQREVSTEFEIWT 1026
>gi|299116728|emb|CBN76286.1| RNA-dependent RNA polymerase 2 [Ectocarpus siliculosus]
Length = 634
Score = 202 bits (514), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 162/559 (28%), Positives = 255/559 (45%), Gaps = 88/559 (15%)
Query: 264 GLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQ 323
G + V + VTP +V PE +SN V R + + D FLR++FVDE++G+L LSP
Sbjct: 43 GNVMVPRASVTPLRVVCQPPEQEMSNGVTRRFAEHSDRFLRVNFVDENMGRLQ---LSPL 99
Query: 324 ISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAAD- 382
+ R+ +++G+VI +K+E LA+S SQ R + + +A AD
Sbjct: 100 L-----------VPRLEGFMKDGLVIAGRKYEFLAYSGSQLRGHACFFYAEGDGAPTADS 148
Query: 383 IRERMGDFREIKNVTKYAARLGQSFASSREALHVDSNIGKISAELAETVAKKCGYAIYTP 442
IR MGD I V K+AARLGQS +S+ + V + K+ + KK G +T
Sbjct: 149 IRSWMGDMSGIDVVGKHAARLGQSLSSTTSTVEVPPALKKLVPD------KKAGPYEFTD 202
Query: 443 SAFQIRYGGYKVTLRNNMFKYKSESTSLDILANSK-----YQREGVARLRL----DNVFE 493
+ G + ++ + T + ++ ++ R+ + L D V E
Sbjct: 203 GCGMMSEG---LARGGDVIPFPHAHTPMQVIQYARQLPCYLNRQFITLLGTLGVPDKVIE 259
Query: 494 RKQREVVARLDAIL----TDSSKVQEALEL---MSSAENTNVLK--------ELLNCGYK 538
+ +V+ LD +L +D ++ + AL ++S T + ++ G
Sbjct: 260 ERYSAMVSTLDKVLRTMLSDPAEAEMALVRYYNITSGGKTGRKQVGPLWEALAMVRAGIN 319
Query: 539 PDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQGLMVVAKKPC 598
EPFL + + +++LR R RIF+ + ++G +DE G L+ GQ
Sbjct: 320 IRTEPFLQSVLRATRDKAMIDLRHRTRIFVPDASCLLGIVDETGLLQPGQA--------- 370
Query: 599 LHPGDMRVLRAVDVPALHHMVDCVLFPAKGER--PHTNECSGSDQDGEIYFVCWDHDRIP 656
D R+V+ H+ + +R T E SG D DG++Y V WD D +P
Sbjct: 371 ---SDSLGCRSVN----HYTANRASIMTNADRFGQCTQEMSGGDLDGDLYSVVWDQDLLP 423
Query: 657 P---------------LQFQPTAYTPAPEKIL------ARDVTIEDVEEYFADYIVNDSL 695
P F Y P PEK + V ++++ ++F YI ND+L
Sbjct: 424 PEREGVAGVQGDSENGFNFPAMGYEP-PEKPKTSASSSGKGVDMKEIADFFLKYIQNDNL 482
Query: 696 GIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEK 755
G I NAH+V A P A + C L L S DF K+GV A P L+V YPDFM K
Sbjct: 483 GKIANAHLVRADLSPFGARCDECLQLAALHSKAVDFPKSGVPAVFPDELKVDSYPDFMCK 542
Query: 756 QDKTWYESQHIVGNLYREV 774
+D Y S+ ++G L+R+
Sbjct: 543 EDNMTYLSKKLIGRLFRDT 561
>gi|345563096|gb|EGX46100.1| hypothetical protein AOL_s00110g264 [Arthrobotrys oligospora ATCC
24927]
Length = 1279
Score = 202 bits (513), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 159/572 (27%), Positives = 261/572 (45%), Gaps = 98/572 (17%)
Query: 266 IYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQIS 325
+ ++++ +TP+ ++ GP + NRV+R Y D +++FLR+S V+ED G L S
Sbjct: 461 VLIHRMSITPTGMFPGGPNLEPKNRVLREYHDYLNHFLRVSLVEEDGGDLRFE------S 514
Query: 326 STNGERRTRIYE-RVLSTL---RNGIVIGDKKFETLAFSNSQERENTLWMFAS----RPE 377
+G+ IY+ R L L N + I + F+ L FS S R +T W A+ R
Sbjct: 515 GVDGKY---IYDGRFLPFLMPESNLLKIAGRTFKFLGFSQSSLRSHTAWFMATISTPRRT 571
Query: 378 LTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDS------------------- 418
+T + ER+GDF+ IK K AAR+GQ+F + + +D
Sbjct: 572 ITVDGVIERLGDFKSIKIPGKCAARIGQAFTDTVANIKIDDFMIAQKRDIIKIAPGGKKY 631
Query: 419 ----NIGKISAELAETVAKKCGY-AIYTPSAFQIRYGGYK------VTLRNNMFKYKSES 467
G +S L E + KK + + P+ FQIR+ G K T R+ +
Sbjct: 632 TFSDGCGTVSKPLIELIWKKGEFTSDPKPTVFQIRFRGAKGVVALDSTQRDPILCLYDSM 691
Query: 468 TSLDILANSKYQ----------------------REGVARLRLDNVFERKQREVVARLDA 505
D L N ++ GV + N + + R + +
Sbjct: 692 VKFDGLKNKVFEICRSFTKPLPFYLNRCIIKILEDRGVP---IKNFMDLQGRALATLRER 748
Query: 506 ILTDSSKVQEALELMSSAENTNV---LKELLNCGYKPDAEPFLSMMPQTFHASNLLELRT 562
T S L+ + N+ ++EL G+ + FL + + + L +++
Sbjct: 749 TFTPDSAAH-FLDYQNRCTQANIPFLIRELFALGWDYKEDNFLRKVVEFTMLTTLRDMKY 807
Query: 563 RARIFIQNGQAMMGCLDEKGTLEYGQ----------------GLMVVAKKPCLHPGDMRV 606
RARI + G ++G LDE G L+ G+ G++ + + P LHPGD+++
Sbjct: 808 RARIQVDKGFTLVGVLDETGYLQEGEIYCPIQREGGKREAHRGVVAICRNPALHPGDIQI 867
Query: 607 LRAVDVP---ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPT 663
+ AV+VP L +++CV+F +G+R + SG D DG+I+ + W+ +P P+
Sbjct: 868 VTAVEVPYDSPLRDLMNCVVFSQRGQRDLPSMLSGGDLDGDIFHIWWEPSLMPRFSSAPS 927
Query: 664 AYTPAPEKI-LARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLV 722
+ PA E + RDVT D+ ++F D++ ND LG+I AH+V A EP S C
Sbjct: 928 DF-PAVEALNYDRDVTQADIGKFFLDFMENDKLGVISVAHMVLADQEPAGVRSAACLTCA 986
Query: 723 KLSSIVGDFSKTGVAATIPSRLRV-KIYPDFM 753
+++S DF KTGV + R K PDF+
Sbjct: 987 RMASQAVDFPKTGVPVRMSELPRTPKARPDFL 1018
>gi|341891713|gb|EGT47648.1| hypothetical protein CAEBREN_06166 [Caenorhabditis brenneri]
Length = 1640
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 215/812 (26%), Positives = 341/812 (41%), Gaps = 190/812 (23%)
Query: 222 ALEMLFHLRE------C---CYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKIL 272
ALE L HL + C C D + RE R + +G S DG I V K++
Sbjct: 439 ALEDLIHLIDGRKRIGCIMKCLDKICQKRE--RMQLING---LSEKEIHDGFQI-VRKVV 492
Query: 273 VTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERR 332
TP++V + PE + NRV+R + + LR++F D++ GK+ + + T +
Sbjct: 493 FTPTRVIYVAPEAIMGNRVLRRFDKDGTKVLRITFRDDNNGKMRTNTTEELLEKTANK-- 550
Query: 333 TRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMF-----------------ASR 375
R G+ + ++ F L SNSQ R++ + A+R
Sbjct: 551 ---------FFREGVRVANRDFGFLGCSNSQMRDSGAYFMLKATPSQLERFYRKNPRATR 601
Query: 376 PELT-----AADIRERMGDFREIKNVTKYAARLGQSFASSR------------------- 411
+L ++R +G F E++NV K AR+GQ F SR
Sbjct: 602 EQLLNYKPLIDEVRLNLGKFSEVENVPKMIARMGQCFTQSRLTGVALERKNYCKIFDYEG 661
Query: 412 -----EALHVDSN-IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK------------ 453
+A + S+ +G +S A+ +A+ Y PS FQIR+ G K
Sbjct: 662 GKNSKQATYTFSDGVGMMSCRFAKIMAQSMNYDRSVPSCFQIRFRGNKGVIAMEPQLDDL 721
Query: 454 -----------------VTLRNNMFKYKSESTSLDILANSKYQREGVARLR------LDN 490
V R + K++++ D + K L LD
Sbjct: 722 RNWAIRHALEEIIPEINVAFRPSQIKFQAKHIEGDQIEMVKPAGPVPVSLNKPLINILDQ 781
Query: 491 VFERK----QREVVARLDAILTDSSKVQE-ALELMSSAENTNVLKEL----------LNC 535
V E + + +V+R++ ++ +VQ A ++ N LKE
Sbjct: 782 VSEMQGVVCHKRMVSRIEELM--DRQVQSFAKQMNDETYCRNRLKEFPRRVDIDYLRTTW 839
Query: 536 GYKPDAEPFL-SMMPQTFHASNLLELRT-RARIFIQNGQAMMGCLDEKGTLEYGQ----- 588
G+ EPF S++ S +LR + +I + G+ + G +DE G L+YGQ
Sbjct: 840 GFTLSREPFFRSLIKAAIKFSITKQLRKEQIQIPKELGRTLFGVVDETGRLQYGQVFVQY 899
Query: 589 ------------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLF 624
G ++++K PC+ PGD+R+ AVD+P LHHM D V+F
Sbjct: 900 SSNILNKHPVRLADQSVQNGVVVTGKILISKNPCIVPGDVRIFEAVDIPELHHMCDVVVF 959
Query: 625 PAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKI-LARDVTIED-- 681
P G RPH +E +GSD DG+ Y V WD + L++ A+ + EK + D D
Sbjct: 960 PQAGPRPHPDEMAGSDLDGDEYSVIWDPQML--LEWNEPAFDFSVEKQRIEWDPNEVDNL 1017
Query: 682 VEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAAT-- 739
+ E++ Y+ DS+G I NAH+ S+ MS C +L K +S DF+K+G+
Sbjct: 1018 MREFYVQYLKLDSVGQISNAHL--HNSDQYGLMSTVCMNLAKKNSQAVDFTKSGIPPADM 1075
Query: 740 -------------IPSRLRVKIYPDF-MEKQDKTWYESQHIVGNLYREVNGIAPSTTTIK 785
+P +I PDF M + Y S + G L+RE I + I
Sbjct: 1076 TRKWEKDPITDEMVPPENPERI-PDFHMGNERNPQYVSPRLCGRLFREFQAID-NVIKIS 1133
Query: 786 SFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTE---YDNKLGNLMDYYGIKTEAEMLS 842
E D D+ + G++ ++ RTE Y+ +L ++M+ YGI TE E++S
Sbjct: 1134 EEKDELYDIEIDEDIMIYGYERFMVE-----ARTELANYNGQLRSIMETYGIATEGEIMS 1188
Query: 843 RCIMEMAKSFDKKRDLEAISFSVRSLRKEARA 874
CI+EM K D + +SF +L E R
Sbjct: 1189 GCIIEMRNRISDK-DQDDMSFFNTNLMIETRV 1219
>gi|46109400|ref|XP_381758.1| hypothetical protein FG01582.1 [Gibberella zeae PH-1]
Length = 1467
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 171/644 (26%), Positives = 274/644 (42%), Gaps = 132/644 (20%)
Query: 245 RKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLR 304
R + G+ P + I+V K LVTP+++ GPE NRV+R Y D D FLR
Sbjct: 425 RDRIYGGKLPPNQ--------IWVFKALVTPTRLLLDGPEAESKNRVLRKYADYNDYFLR 476
Query: 305 LSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQE 364
+ F +E L P++ + IY + + +GI I +KF+ L FS+S
Sbjct: 477 VLFCEEGGQDLR---FHPKVDNEP------IYSQFRRMMDHGIQIAGRKFDFLGFSHSSL 527
Query: 365 RENTLWMFA-----SRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN 419
R ++ W A R + I + +GDFR+I+ K AAR+GQ+F+ + A+ + N
Sbjct: 528 RSHSAWFSAPFIDKDRQLQSPEAILQALGDFRDIRVPAKCAARIGQAFSETPYAVPIFEN 587
Query: 420 ----------------------IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYKVTL- 456
+G IS E E + P+ QIR+GG K L
Sbjct: 588 NIVPRYIPDVKSEDGSRVFSDGVGTISQEALEAIWPYLSMNSAAPTCLQIRWGGCKGMLS 647
Query: 457 -------------RNNMFKYKSESTS-LDIL-ANSKYQREGVARLRL---------DNVF 492
+ +M K+KSE T L I SK R + R + D F
Sbjct: 648 LDTRLEGKVFCIRQESMMKFKSEDTGELGICDTASKPLRLVLNRQMIKILEDMGTRDEWF 707
Query: 493 ERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLK-----ELLNCGYKPDAEPFLSM 547
Q + L + D++ LE + N + + E ++ Y+ D FL
Sbjct: 708 FELQNNALDILRNVTADATNTSSFLEHQAIGINMGLPRLVKQLEKMDIDYRRDK--FLKA 765
Query: 548 MPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ------------------- 588
+ L L+ +ARI + NG + G +DE G L+ G+
Sbjct: 766 AVEHVVLRELRLLKHKARIPVDNGVTLFGIMDETGFLKEGEVYVTYDKTYGRNNSRGIKS 825
Query: 589 ----GLMVVAKKPCLHPGDMRVLRAVDVP---ALHHMVDCVLFPAKGERPHTNECSGSDQ 641
G ++V + P LHPGD+++++ V P +L + +C++F KG+R + SG D
Sbjct: 826 TLTDGEIIVTRSPALHPGDIQLVKQVTPPQGHSLRSLQNCIVFSQKGKRDLPSMLSGGDL 885
Query: 642 DGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNA 701
DG+IY + WD + +P F+P Y + L R V +D+ ++F +++ D LG+I
Sbjct: 886 DGDIYNIIWDPEAMPSRVFRPADYPRVTPQPLDRQVEPKDIADFFINFMRTDILGVIATR 945
Query: 702 HVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRV-KIYPDFM------- 753
HV+ A ++ C L +L S DFSKTG+ + + R + PDF+
Sbjct: 946 HVILADYNDLGSIDRDCIALAELHSTAVDFSKTGIPVNVKALPRAPRFRPDFLATAPPLK 1005
Query: 754 ----------------------EKQDKTWYESQHIVGNLYREVN 775
+ +Y+S+ I+G LYR V+
Sbjct: 1006 LYDKGQLAHIGEDDEMDDADDMARTKTNYYQSEKILGQLYRNVD 1049
>gi|392886219|ref|NP_001250556.1| Protein RRF-1, isoform b [Caenorhabditis elegans]
gi|345107385|emb|CCD31066.1| Protein RRF-1, isoform b [Caenorhabditis elegans]
Length = 1520
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 195/746 (26%), Positives = 321/746 (43%), Gaps = 171/746 (22%)
Query: 264 GLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQ 323
G V K++ TP++V + PE + NRV+R + + LR++F D++ K+ S V
Sbjct: 379 GYQRVRKVIFTPTRVIYIAPETIMGNRVLRKFDKDGTRVLRVTFRDDNNKKMRSNVTGKL 438
Query: 324 ISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFAS--------- 374
+ T + L +G+ I ++++ L SNSQ R+N +
Sbjct: 439 LDRTANK-----------YLEHGVRIANREYGFLGCSNSQMRDNGAYFMMRFTDKQLDRF 487
Query: 375 -RPELTAADI---------RERMGDFREIKNVTKYAARLGQSFASSR------------- 411
+ TA++I R ++G F EI+NV K ARLGQ F SR
Sbjct: 488 YKCNPTASNINFKPKIDEVRFQLGRFSEIENVPKLMARLGQCFTQSRLTGVGLGRDDYCS 547
Query: 412 ------------EALHVDSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGG-------- 451
+G +S + A+ V++ + PS FQIR+ G
Sbjct: 548 TYDLTGGRATNGSEYTFSDGVGMMSYQFAQEVSQAMQFGKAVPSCFQIRFRGNKGVIAIE 607
Query: 452 --------------------YKVTLRNNMFKYKSESTSLDILANSKYQREGVARLR---- 487
K R + K+++++ S D + K+ + L
Sbjct: 608 PFLDEIRKWALVNGVTSMKMAKCLFRPSQIKFQAKAISGDQIEMVKFSSAVLVALNKPFI 667
Query: 488 --LDNVFERK----QREVVARLDAILTDSSKVQEALELMSSAENTNVLKEL--------- 532
LD V E + + + +R++ ++ D + A ++ N LKE
Sbjct: 668 NILDQVSEMQSLDCHKRITSRIEELM-DRQILSFAKQMNEETFCRNKLKEFPRRIDIDNL 726
Query: 533 -LNCGYKPDAEPFL-SMMPQTFHASNLLEL-RTRARIFIQNGQAMMGCLDEKGTLEYGQ- 588
G+ +EPF S++ + S +L + + +I + G++M+G +DE G L+YGQ
Sbjct: 727 RTMWGFTLSSEPFFRSLIKASIKFSITKQLCKEQIQIPSELGRSMLGVVDETGRLQYGQI 786
Query: 589 ----------------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVD 620
G +++ K PC+ PGD+R+ AVD+P LHHM D
Sbjct: 787 FVQYTKNYKKKLPPRDSNNKVHGSEIVTGTVLLTKNPCIVPGDVRIFEAVDIPELHHMCD 846
Query: 621 CVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKI-LARDVTI 679
V+FP G RPH +E +GSD DG+ Y V WD + + +P + A EKI + D
Sbjct: 847 VVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQELLLERNEEPFDF--AVEKIKVPYDREK 904
Query: 680 EDV--EEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNR-CPDLVKLSSIVGDFSKTG- 735
DV E++ Y+ DS+G I N+H+ ++ +++R C DL K + DF+K+G
Sbjct: 905 LDVLMREFYVTYLKLDSVGQISNSHL---HNSDQYGLNSRVCMDLAKKNCQAVDFTKSGQ 961
Query: 736 --------------VAATIPSRLRVKIYPDF-MEKQDKTWYESQHIVGNLYREVNGIAPS 780
IP +I PDF M + Y S + G L+RE I
Sbjct: 962 PPDPLETKWRADPVTFEVIPPENPERI-PDFHMGNERSPMYVSPRLCGKLFREFQAI--- 1017
Query: 781 TTTIKSFAKEGAMQF---YDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTE 837
+ ++E Q+ D + V GF E M+ K + Y+ +L ++M+ YGI++E
Sbjct: 1018 -DNVIKISEERDEQYNIELDETIFVTGF-ERYME-SAQKQLSSYNGQLRSIMENYGIRSE 1074
Query: 838 AEMLSRCIMEMAKSFDKKRDLEAISF 863
E++S CI+EM K D + +SF
Sbjct: 1075 GEIMSGCIVEMRNRISDK-DQDDMSF 1099
>gi|392886217|ref|NP_001250555.1| Protein RRF-1, isoform a [Caenorhabditis elegans]
gi|8886070|gb|AAF80368.1|AF159144_1 RRF-1 [Caenorhabditis elegans]
gi|14530419|emb|CAC42290.1| Protein RRF-1, isoform a [Caenorhabditis elegans]
Length = 1601
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 195/746 (26%), Positives = 321/746 (43%), Gaps = 171/746 (22%)
Query: 264 GLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQ 323
G V K++ TP++V + PE + NRV+R + + LR++F D++ K+ S V
Sbjct: 460 GYQRVRKVIFTPTRVIYIAPETIMGNRVLRKFDKDGTRVLRVTFRDDNNKKMRSNVTGKL 519
Query: 324 ISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFAS--------- 374
+ T + L +G+ I ++++ L SNSQ R+N +
Sbjct: 520 LDRTANK-----------YLEHGVRIANREYGFLGCSNSQMRDNGAYFMMRFTDKQLDRF 568
Query: 375 -RPELTAADI---------RERMGDFREIKNVTKYAARLGQSFASSR------------- 411
+ TA++I R ++G F EI+NV K ARLGQ F SR
Sbjct: 569 YKCNPTASNINFKPKIDEVRFQLGRFSEIENVPKLMARLGQCFTQSRLTGVGLGRDDYCS 628
Query: 412 ------------EALHVDSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGG-------- 451
+G +S + A+ V++ + PS FQIR+ G
Sbjct: 629 TYDLTGGRATNGSEYTFSDGVGMMSYQFAQEVSQAMQFGKAVPSCFQIRFRGNKGVIAIE 688
Query: 452 --------------------YKVTLRNNMFKYKSESTSLDILANSKYQREGVARLR---- 487
K R + K+++++ S D + K+ + L
Sbjct: 689 PFLDEIRKWALVNGVTSMKMAKCLFRPSQIKFQAKAISGDQIEMVKFSSAVLVALNKPFI 748
Query: 488 --LDNVFERK----QREVVARLDAILTDSSKVQEALELMSSAENTNVLKEL--------- 532
LD V E + + + +R++ ++ D + A ++ N LKE
Sbjct: 749 NILDQVSEMQSLDCHKRITSRIEELM-DRQILSFAKQMNEETFCRNKLKEFPRRIDIDNL 807
Query: 533 -LNCGYKPDAEPFL-SMMPQTFHASNLLEL-RTRARIFIQNGQAMMGCLDEKGTLEYGQ- 588
G+ +EPF S++ + S +L + + +I + G++M+G +DE G L+YGQ
Sbjct: 808 RTMWGFTLSSEPFFRSLIKASIKFSITKQLCKEQIQIPSELGRSMLGVVDETGRLQYGQI 867
Query: 589 ----------------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVD 620
G +++ K PC+ PGD+R+ AVD+P LHHM D
Sbjct: 868 FVQYTKNYKKKLPPRDSNNKVHGSEIVTGTVLLTKNPCIVPGDVRIFEAVDIPELHHMCD 927
Query: 621 CVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKI-LARDVTI 679
V+FP G RPH +E +GSD DG+ Y V WD + + +P + A EKI + D
Sbjct: 928 VVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQELLLERNEEPFDF--AVEKIKVPYDREK 985
Query: 680 EDV--EEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNR-CPDLVKLSSIVGDFSKTG- 735
DV E++ Y+ DS+G I N+H+ ++ +++R C DL K + DF+K+G
Sbjct: 986 LDVLMREFYVTYLKLDSVGQISNSHL---HNSDQYGLNSRVCMDLAKKNCQAVDFTKSGQ 1042
Query: 736 --------------VAATIPSRLRVKIYPDF-MEKQDKTWYESQHIVGNLYREVNGIAPS 780
IP +I PDF M + Y S + G L+RE I
Sbjct: 1043 PPDPLETKWRADPVTFEVIPPENPERI-PDFHMGNERSPMYVSPRLCGKLFREFQAI--- 1098
Query: 781 TTTIKSFAKEGAMQF---YDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTE 837
+ ++E Q+ D + V GF E M+ K + Y+ +L ++M+ YGI++E
Sbjct: 1099 -DNVIKISEERDEQYNIELDETIFVTGF-ERYME-SAQKQLSSYNGQLRSIMENYGIRSE 1155
Query: 838 AEMLSRCIMEMAKSFDKKRDLEAISF 863
E++S CI+EM K D + +SF
Sbjct: 1156 GEIMSGCIVEMRNRISDK-DQDDMSF 1180
>gi|212537491|ref|XP_002148901.1| RNA-dependent RNA polymerase, putative [Talaromyces marneffei ATCC
18224]
gi|210068643|gb|EEA22734.1| RNA-dependent RNA polymerase, putative [Talaromyces marneffei ATCC
18224]
Length = 1207
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 154/568 (27%), Positives = 261/568 (45%), Gaps = 99/568 (17%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLY---STVLSPQI 324
++++ VTP+ +Y GP + NRV+R Y ++ D F+R+ F++E L S+ L P
Sbjct: 417 IHRLSVTPTGLYLDGPNVEAENRVLRKYRNQSDQFIRVRFIEESGDPLMYDISSNLDP-- 474
Query: 325 SSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE------L 378
I++R LR+G++I D+ + L FS+S R + W A + +
Sbjct: 475 ----------IFDRFREVLRDGVIIADRHYRFLGFSHSSLRSRSCWFMAEFHDSVTGEFI 524
Query: 379 TAADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSNI----------GKISAELA 428
T + ++GDF IK +K+AARLGQ+F+ + ++ VD ++ G++ ++
Sbjct: 525 TVNKLISKLGDFDHIKAPSKFAARLGQTFSDTLTSISVDKDMVKRIDDVERNGRVFSDGC 584
Query: 429 ETVAKKCGYAIYT---------PSAFQIRYGGYK-------------VTLRNNMFKYKSE 466
T++K+ + IY P+ FQ+R G K + LR++M K+++E
Sbjct: 585 GTISKEILWRIYRDYPRNAAVRPTVFQVRISGAKGMLSLDPTLKGPTICLRDSMIKFRAE 644
Query: 467 ST-----------SLDILANSKY----QREGVARLRLDNVFERKQREVVARLDAILTDSS 511
+ SL N+ + GV R ++F QRE V L +
Sbjct: 645 ADNNIEICGSGIHSLPCYLNAPLIKILEDLGVPR----DLFLELQREEVESLRQTVRSPQ 700
Query: 512 KVQEALELMSSAENTNV---LKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFI 568
L+ +++T + + L + G + + FL + L +L+ +ARI +
Sbjct: 701 HAAVFLDQAHISKSTRLSWLITLLQSMGVNYNQDGFLKRAVELVILMKLRDLKYKARILV 760
Query: 569 QNGQAMMGCLDEKGTLEYG------------------QGLMVVAKKPCLHPGDMRVLRAV 610
+G + G +DE G L+ G Q +++ + P HPGD+++ AV
Sbjct: 761 PDGVTLYGIMDETGYLKEGEIFVPILNEETKRRDILVQDDVLITRSPAFHPGDVQLANAV 820
Query: 611 DVP---ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHD-RIPPLQFQPTAYT 666
+VP L + +CV+F KG R ++ SG D DG+I+ + +D R+ L +P Y
Sbjct: 821 NVPEDSPLRKLHNCVVFSQKGTRDLPSQLSGGDLDGDIFNIIYDPRFRLRRLA-KPADYP 879
Query: 667 PAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSS 726
P L R V I+D++++F ++ D LG I H + A + C L +L S
Sbjct: 880 RVPGTELGRPVQIDDIQDFFVTFMQQDQLGRIATTHKILADQQVKGTFDPNCLTLAQLHS 939
Query: 727 IVGDFSKTGVAATIPSRLRVKIY-PDFM 753
DFSKTG I R Y PDFM
Sbjct: 940 TAVDFSKTGTPVDIKMIPRYPPYRPDFM 967
>gi|451855231|gb|EMD68523.1| hypothetical protein COCSADRAFT_178332 [Cochliobolus sativus ND90Pr]
Length = 1244
Score = 200 bits (509), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 161/569 (28%), Positives = 252/569 (44%), Gaps = 99/569 (17%)
Query: 270 KILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNG 329
K VTP+ + GP+ +SNRV+R Y + F+R+ F DED ++ + Q
Sbjct: 450 KATVTPTGILLRGPDWDVSNRVLRRYTTRTEYFMRVFFADEDGLSVFHDSRASQ------ 503
Query: 330 ERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRER--- 386
++YER + L+NGI + + F+ L FS++ R + W A E+ + +R R
Sbjct: 504 ---NQVYERFRNVLQNGISVAGRTFQFLGFSHASLRNHQAWFMAPF-EMDGSLVRARNVI 559
Query: 387 --MGDFREIKNVTKYAARLGQSFASS--------------------REALHVDSNIGKIS 424
+GDF I K AAR+GQ+F+ + R G IS
Sbjct: 560 QDLGDFSHIHCSAKCAARIGQAFSDTIFSVPVPETAYVTEVKDDVERNGRTFSDGCGTIS 619
Query: 425 AELAETVAKKCG--YAIYTPSAFQIRYGGYKVTL-------------RNNMFKYKSESTS 469
EL TV + P+ QIRY G K L R +M KY ++ T
Sbjct: 620 LELLRTVWRALPPERRQQRPTVLQIRYRGAKGVLSLDASLSGQQLHVRKSMTKYIAKETW 679
Query: 470 LDI-LANSKYQREGVARLRLDNVFERKQREVVARLDAILTDSSKVQEALELMSS------ 522
D+ L + Y+ V L++ F + ++ + L + + L+L++
Sbjct: 680 RDLELCGAAYKPLSVF---LNHQFIKILEDLGVPAEKFLDVQDEAVKILKLITEHPLNAA 736
Query: 523 -----------AENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNG 571
A+ + + + G A+ FL+ + + S+L L+ RARI I+ G
Sbjct: 737 SFLAYSHSCVFAKVPQLFEMMHRIGLSFHADRFLTDIVEVAAMSSLRSLKYRARIPIEKG 796
Query: 572 QAMMGCLDEKGTLEYGQ---------------------GLMVVAKKPCLHPGDMRVLRAV 610
+ G +DE TL+YG+ +VV + P LHPGD++++ AV
Sbjct: 797 YLLYGVMDETNTLKYGEVYIATEDHDKTGKLKRSILVGNQIVVTRAPALHPGDVQLVNAV 856
Query: 611 DVP---ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTP 667
DVP L + +CV+F +G R ++ SG D DG+++ + +D IP +P Y
Sbjct: 857 DVPDDSPLRALHNCVVFSQQGPRDLPSQLSGGDLDGDLFHIIYDQRLIPAYTVEPAEYDK 916
Query: 668 APEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSI 727
P L R V D+ ++F +Y+ D LG I N H + A +P+ C L KL+S
Sbjct: 917 VPANDLGRPVEANDIVDFFIEYMKMDRLGQISNKHKIRADVKPNGTRHPDCLILAKLASD 976
Query: 728 VGDFSKTGVAA---TIPSRLRVKIYPDFM 753
DFSKTGV A IP + PDFM
Sbjct: 977 AVDFSKTGVPADMSLIPKGID-HFRPDFM 1004
>gi|384495849|gb|EIE86340.1| hypothetical protein RO3G_11051 [Rhizopus delemar RA 99-880]
Length = 1099
Score = 199 bits (507), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 146/493 (29%), Positives = 242/493 (49%), Gaps = 78/493 (15%)
Query: 220 KHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVY 279
+ LEM+ + +DP++ L +Q ++ + + P+ VNK+++TP+ V+
Sbjct: 619 REYLEMVVIRKTRLWDPLADLSDQQKRLGAIHKVPSR--------CFLVNKVIITPTSVF 670
Query: 280 FCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTR-IYER 338
+ + NRV+R + D ID FLR+ F+D+ ++ V P G+R +Y R
Sbjct: 671 IEPRSLEVGNRVLRHFQDHIDRFLRVQFLDDGFNRV-CAVRKP------GDRMNEALYVR 723
Query: 339 VLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTK 398
+ G+ IGD+ +E LA+S+SQ RE+ W FAS +LTA IR MGDF K V+K
Sbjct: 724 IRKLFDQGLQIGDRYYEFLAYSSSQLREHGCWFFASGKDLTAEMIRRWMGDFSREKVVSK 783
Query: 399 YAARLGQSFASSRE--ALHVD----------------SNIGKISAELAETVAKKCGYAIY 440
YAAR+GQ F+SS + H D +GK+S LA+ + +
Sbjct: 784 YAARMGQCFSSSVAICSFHADEVETIPDMKHNGYIFSDGVGKMSLALAKKTRNQMNLGV- 842
Query: 441 TPSAFQIRYGGYK--------------VTLRNNMFKYKSESTSLDILANSKYQREGVAR- 485
PSA Q+R GG K V LR + K+ ++ L+++ + Y+ + R
Sbjct: 843 DPSALQVRLGGSKGVLAVDPNLPKGVHVQLRPSQIKFDTDHLELEVVKIATYRNGYLNRQ 902
Query: 486 -LRLDNVFERKQREVVARLDAILTDSSKV----QEALELMSSAEN----TNVLKELLNCG 536
+ L + + V+ ++ +L ++ K+ EAL +S + +N+L + G
Sbjct: 903 IIILMSALGVRDAYVLELVNTMLQNTEKILTDPLEALYALSPRSDDFGTSNMLVNAIQAG 962
Query: 537 YKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQGLMVVA-- 594
+ +P++ + F S L EL+ +A++ + ++G +DE G LE + + V
Sbjct: 963 FLKSGDPYIQNILVLFRCSLLKELKKKAKVLVPKSACLIGVVDETGLLESNEVFVQVWDN 1022
Query: 595 -----------------KKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECS 637
+ P LHPGD+RVL+AVD+P LHH+ + V+F +KGER + CS
Sbjct: 1023 SATGNINQVITDRVSIFRNPSLHPGDLRVLQAVDIPELHHLKNVVVFSSKGERDVPSMCS 1082
Query: 638 GSDQDGEIYFVCW 650
G D DG+ Y W
Sbjct: 1083 GGDLDGDEYTYEW 1095
>gi|156045453|ref|XP_001589282.1| hypothetical protein SS1G_09915 [Sclerotinia sclerotiorum 1980]
gi|154694310|gb|EDN94048.1| hypothetical protein SS1G_09915 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1184
Score = 199 bits (505), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 162/584 (27%), Positives = 266/584 (45%), Gaps = 93/584 (15%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKL-YSTVLSPQISS 326
V+++ +TP+ Y GPE +NR++R Y NF+R++F DED G++ Y++ ++
Sbjct: 420 VHRVTITPAGFYLEGPEAESNNRILRKYAGSHGNFVRVNFCDEDGGRIQYASNVA----- 474
Query: 327 TNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWM----FASRPELTAAD 382
N E +++ +L +NG I +K+E L S+S R + W F A
Sbjct: 475 -NDEIFDGVFKNIL---KNGFSIASQKYEYLGSSHSSLRTQSCWFVAPFFNKEGYHDAQH 530
Query: 383 IRERMGDFREIKNVTKYAARLGQSFASSREALHVDSNI------------GKISAELAET 430
I +G+F I++ K AAR+GQ+F+ + A+ +D G++ ++ T
Sbjct: 531 IIHDLGNFTAIRSPAKCAARIGQAFSDTPNAITLDKRTVTIERIPDVERNGRVFSDGVGT 590
Query: 431 VAKKCGYAIY---------TPSAFQIRYGGYK-------------VTLRNNMFKYK-SES 467
+++ + I+ P+ FQIRY G K + LR +M K+ S S
Sbjct: 591 MSESLMHKIWEKLPNKKFVKPTCFQIRYQGAKGMISLDTRLPGDHLRLRESMIKFDGSIS 650
Query: 468 TSLDILAN-----SKYQREGVARLRLD-----NVFERKQREVVARLDAILTDSSKVQEAL 517
L+I S Y ++ D F + Q + V RL AI ++ L
Sbjct: 651 NDLEICGGAYKPLSMYLNRQFIKILEDLGVEPEYFMKLQEKEVTRLRAITANTYNASTFL 710
Query: 518 ELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRT---RARIFIQNGQAM 574
E + + + +C Y + + L+ELRT +ARI ++ G +
Sbjct: 711 ERKRVGDVVLLPYLIEHCSYLNLDFRNDVFLRDVLEMAVLIELRTLKHKARIPVEKGYHL 770
Query: 575 MGCLDEKGTLEYG----------------QGLMVVAKKPCLHPGDMRVLRAVDVPA---L 615
G +DE G L+ G Q +V+ + P LHPGD+++ AVDVP+ L
Sbjct: 771 HGIMDETGILKEGEIYCCWLEDGKRTTLVQSSVVITRAPALHPGDVQLANAVDVPSNSPL 830
Query: 616 HHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILAR 675
+ +C+ F KG R ++ SG D DG++Y+V +D + P Y P + R
Sbjct: 831 KRLYNCICFSQKGARDLPSQLSGGDLDGDLYYVMFDPEMKLKKTVIPADYPRLPPLDIGR 890
Query: 676 DVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTG 735
VT +D+ + F ++ D LG+I N H VYA +C L +L S DFSKTG
Sbjct: 891 SVTQQDMADNFLTFMKTDQLGVISNRHQVYADQNVMGTQCQQCLILAELCSTAVDFSKTG 950
Query: 736 VAATIPSRLRVKIYPDFMEKQDKT----WYESQHIVGNLYREVN 775
+A P + M+++D+ +YESQ G LYR ++
Sbjct: 951 IAEYAPI--------EAMDEEDEVSNIKYYESQKTCGMLYRAID 986
>gi|452004258|gb|EMD96714.1| hypothetical protein COCHEDRAFT_106396 [Cochliobolus heterostrophus
C5]
Length = 931
Score = 199 bits (505), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 161/569 (28%), Positives = 254/569 (44%), Gaps = 99/569 (17%)
Query: 270 KILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNG 329
K VTP+ + GP+ +SNRV+R Y + F+R+ F DED ++ + Q
Sbjct: 137 KATVTPTGILLRGPDWDVSNRVLRKYSTRTEYFMRVFFADEDGLSVFHDSRASQ------ 190
Query: 330 ERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRER--- 386
++YER + L+NGI + + F+ L FS++ R + W A E+ + +R R
Sbjct: 191 ---NQVYERFRNVLQNGISVAGRTFQFLGFSHASLRNHQAWFMAPF-EMDGSLVRARNVI 246
Query: 387 --MGDFREIKNVTKYAARLGQSFASS--------------------REALHVDSNIGKIS 424
+GDF I K AAR+GQ+F+ + R + G IS
Sbjct: 247 QDLGDFSHIHCSAKCAARIGQAFSDTIFSVPVPETAYVTEVKDDVERNSRTFSDGCGTIS 306
Query: 425 AELAETVAKKCG--YAIYTPSAFQIRYGGYKVTL-------------RNNMFKYKSESTS 469
EL TV + P+ QIRY G K L R +M KY ++ T
Sbjct: 307 LELLRTVWRALPPERRQQRPTVLQIRYRGAKGVLSLDASLSDQQLHVRKSMTKYIAKETW 366
Query: 470 LDI-LANSKYQREGVARLRLDNVFERKQREVVARLDAILTDSSKVQEALELMSS------ 522
D+ L + Y+ V L++ F + ++ + L + L+L++
Sbjct: 367 RDLELCGAAYKPLSVF---LNHQFIKILEDLGVPAENFLHVQDEAVNTLKLITEHPLNAA 423
Query: 523 -----------AENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNG 571
A+ + + + G A+ FL+ + + S+L L+ RARI I+ G
Sbjct: 424 SFLAYSHSCIFAKVPQLFEMMHRIGLPFHADRFLTDIVEVAAMSSLRSLKYRARIPIEKG 483
Query: 572 QAMMGCLDEKGTLEYGQ---------------------GLMVVAKKPCLHPGDMRVLRAV 610
+ G +DE TL+YG+ ++V + P LHPGD++++ AV
Sbjct: 484 YLLYGVMDETNTLKYGEVYIATQDHDKTGKLKRSILVGNQIIVTRAPALHPGDIQLVDAV 543
Query: 611 DVP---ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTP 667
DV L + +C++F +G R ++ SG D DG+++ + +D IP +P Y
Sbjct: 544 DVTDDSPLRALHNCIVFSQQGPRDLPSQLSGGDLDGDLFHIIYDQRLIPAYTVEPAEYDK 603
Query: 668 APEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSI 727
AP K L R V D+ +F +Y+ D LG I N H + A +P+ C L KL+S
Sbjct: 604 APAKDLGRPVEANDIVGFFIEYMKMDRLGQISNKHKIRADVKPNGTRHPDCLTLAKLASD 663
Query: 728 VGDFSKTGVAATIPSRLRVKI---YPDFM 753
DFSKTGV A + SR+ I PDFM
Sbjct: 664 AVDFSKTGVPADM-SRIPKGIDHFRPDFM 691
>gi|389747663|gb|EIM88841.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 890
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 153/549 (27%), Positives = 254/549 (46%), Gaps = 71/549 (12%)
Query: 266 IYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQIS 325
+ + + LV P+++ P++ SN ++R++ D D FLR+ F+ E+ + +
Sbjct: 345 MMIRRCLVAPTRLILMPPQMETSNNLLRTFKDHADRFLRVQFIQEESDLTVTRETNEIDD 404
Query: 326 STNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRE 385
+ G R ++ RV TL+ GI + +K+ L F SQ + WM A + + I +
Sbjct: 405 ALQGGRG--LFARVRRTLKYGIHVAGRKYVFLCFGESQLKSKGCWMIAEKEGFSVQGILK 462
Query: 386 RMGDFREIKNVTKYAARLGQSFASSR--------EALH----VDSN---------IGKIS 424
MGD + + + K+AAR G ++SR E +H DS +G S
Sbjct: 463 WMGDLDKERVIAKHAARQGLCLSTSRAIPLDLQVEFIHDITRTDSQGKEYVFTDGMGDCS 522
Query: 425 AELAETVAKKCGYAIYTPSAFQIRYGG------------------YKVTLRNNMFKYKSE 466
E+A A+ G SA Q+RYG Y + +R++M K+KS
Sbjct: 523 QEVANVCARFMGIEGDV-SAVQVRYGTGIKGVISVSEDPLMRGNPYTLRVRDSMVKFKSS 581
Query: 467 STSLDILANSKYQREGVARLRLDNVFERKQREVVARLDAILTDSSKVQEALELMSSAENT 526
+ L+ L + Y + R ++ + E LD T+ +K+Q LE E
Sbjct: 582 NPGLNALKVATYSPATLNR-QVILLMESLGVSPDTLLDIFKTEKTKIQ-GLEASFGQERL 639
Query: 527 N-----VLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEK 581
+ L++ L+ G+K D P ++ + + L +L+ +A I I +MG +D
Sbjct: 640 SRASAFPLEKALDSGFKDD--PLVASIVRLVKCRLLSDLKWKAWIEIPKSAFLMGVVDPT 697
Query: 582 GTLEYGQ----------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFP 625
GTL+ G+ G + PCLHPGD+R ++AVD ++ H+ + ++F
Sbjct: 698 GTLQEGEIFCQIQPPNSSPSVVVGDCTAYRNPCLHPGDVRSVKAVDYMSMRHLRNVIVFS 757
Query: 626 AKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYT-PAPEKILARDVTIEDVEE 684
G RP N G D DG+ + + WD +++P YT P P K + VT++ ++
Sbjct: 758 TLGHRPLPNMMGGGDVDGDFFSLIWDDRFRLGSEYEPMDYTGPTPVKSIL-PVTVDQTKK 816
Query: 685 YFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRL 744
+F D+I ND LG +CN H+ A ++ + C L L+S DF KTGV +
Sbjct: 817 FFVDFIRNDLLGAVCNTHM--ALADEHGPYHDDCLKLAALASQAVDFVKTGVPVSHNDIP 874
Query: 745 RVKIYPDFM 753
+V YPDFM
Sbjct: 875 KVDEYPDFM 883
>gi|85110327|ref|XP_963405.1| hypothetical protein NCU08435 [Neurospora crassa OR74A]
gi|28881256|emb|CAD70515.1| related to RNA-directed RNA polymerase [Neurospora crassa]
gi|28925084|gb|EAA34169.1| predicted protein [Neurospora crassa OR74A]
Length = 1351
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 167/639 (26%), Positives = 282/639 (44%), Gaps = 118/639 (18%)
Query: 264 GLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQ 323
GL + + LVTP+++ GPE+ NR++R +P+ D+FLR+ F +ED L+ +
Sbjct: 410 GLTKIYRALVTPTRIELHGPELEAKNRILRKFPEHQDHFLRVQFAEEDGQDLF---FNSA 466
Query: 324 ISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA-----SRPEL 378
+S IY+R L NGI +G + + L FS+S R ++LW+ A + +L
Sbjct: 467 VSMDA------IYQRFKDVLTNGISVGGRVYRFLGFSHSSLRAHSLWLAAPFIYDGKLQL 520
Query: 379 TAADIRERMGDFREIKNVTKYAARLGQSFASS--------------------REALHVDS 418
A++I E +GDFR I + + AAR+GQ+F+ + R
Sbjct: 521 -ASNIIEDLGDFRNIMSPARRAARIGQAFSETPYSVSLYDHGIDVIRQRDVKRNERVFSD 579
Query: 419 NIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK-------------VTLRNNMFKYKS 465
+G IS E + ++ + P+ Q+R+ G K + +R++M K++S
Sbjct: 580 GVGIISQGALEVIHREIPESKGYPNCLQVRWAGAKGMLALDARLTGRQICIRDSMEKFRS 639
Query: 466 E-----------STSLDILANSKYQREGVARLRLDNVFERKQREVVARLDAILTDSSKVQ 514
S + ++ N + + F Q + + RL AI + V
Sbjct: 640 RDEEHLEICDMASKPIPLMLNRQMIKILEDMRAPAQWFLELQEKELQRLRAITDNVQNVA 699
Query: 515 EALELMSSAENTNV---LKEL--LNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQ 569
L+L ++ ++ LK+L +N Y+ D FL + + L L+ +ARI +
Sbjct: 700 TFLKLQCVGDSVHLSQFLKDLDKMNIDYRRDQ--FLRGIVEAVVLRELRLLKHKARIPVP 757
Query: 570 NGQAMMGCLDEKGTLEYGQ------------------GLMVVAKKPCLHPGDMRVLRAVD 611
G + G +DE G L G+ G +VV + P LHPGD+++
Sbjct: 758 YGVTLFGVMDETGLLREGEVYVTFETVDGRFKDPPTAGPVVVTRSPALHPGDIQIAHNAI 817
Query: 612 VPALH---HMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPA 668
PA H + +C++F GER ++ SG D DG+ + V WD + L+ A P
Sbjct: 818 PPAGHPLRELKNCIVFSQNGERDLPSQLSGGDLDGDTFNVIWDQSIVATLRTFAAADYPR 877
Query: 669 PEKI-LARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSI 727
E + L R+V +D+ ++F +++ D LG+I H++ A + + C L L S
Sbjct: 878 VEPLKLNREVESKDMADFFVEFMKADHLGVIAVRHMILADERNEGTLDADCLKLAALHSK 937
Query: 728 VGDFSKTGVAATIPSRLRVKIY-PDFM------EKQDKT--------------------- 759
DFSK+G+ I R +Y PDF+ + DK+
Sbjct: 938 AVDFSKSGIHVDITELPRPPMYRPDFLVNGPDIKIHDKSTIDMEEQYLRQDDDDGDDTPR 997
Query: 760 --WYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFY 796
+Y+S I+G L+R V+ T IK G + F+
Sbjct: 998 YKYYKSDKILGRLFRAVDEKKIWTKNIKLEVPSGGVPFW 1036
>gi|239614149|gb|EEQ91136.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis ER-3]
Length = 1701
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 143/475 (30%), Positives = 226/475 (47%), Gaps = 98/475 (20%)
Query: 220 KHALEMLFHL---RECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPS 276
K A E+L H+ + YDP+ + K ++G+ P G Y+ VTPS
Sbjct: 846 KKAKELLEHVAMNKTIYYDPMEIFNIPFPKGATNGRIP--------GHCCYIRSADVTPS 897
Query: 277 KVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDED-LGKLYSTVLSPQISSTNGERRTRI 335
+ + P + SNRV R + + D FLR+ F DE +GK+Y +S N + ++
Sbjct: 898 TICYDIPSVDTSNRVFRYHREHADRFLRVRFCDEKYIGKIYPN------NSGNSQCMEKV 951
Query: 336 YERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKN 395
Y RVL TL++GI IGD+++E LAF NSQ RE+ + FAS P LTAA+IR +MGD I+
Sbjct: 952 YARVLRTLQHGITIGDRRYEFLAFGNSQLREHGAYFFASLPHLTAANIRAQMGDLNNIRV 1011
Query: 396 VTKYAARLGQSFASSREALH----------VDSN-------IGKISAELAETVAKKCGYA 438
V KYAARLGQ F+++R ++ N +G++S L + + G
Sbjct: 1012 VAKYAARLGQCFSTTRAVTSCPVQIKKIDDIERNGYVFSDGVGRLSHFLTQMIQSDLGIK 1071
Query: 439 IYT---PSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLDILANSKYQREG 482
+ PS FQ R GG K V +R + FK+ + L+I+ S +
Sbjct: 1072 TPSGEPPSVFQFRLGGCKGILAVSPEARQREVHIRRSQFKFPASHNGLEIIRYSHFSYAT 1131
Query: 483 VARLRL---------DNVFERKQREVVARLDAILTDSSKVQEALE-LMSSAENTNVLKEL 532
+ R + D VF K ++A L+ +TD K L+ + + T VL ++
Sbjct: 1132 LNRQLILILSALGTPDEVFIAKLSMMLANLEQAMTDEDKAVSLLQKYVDPNQMTLVLADM 1191
Query: 533 LNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL-------- 584
+ G++ EPF+S + + + + L+ +A+I I G ++GC+DE TL
Sbjct: 1192 IRDGFQGSREPFVSSLLELWRTWQIKYLKEKAKIAIDEGAFLLGCIDETKTLKGYFRSAR 1251
Query: 585 ---------------------------EYG--QGLMVVAKKPCLHPGDMRVLRAV 610
+Y +GL ++A+ P LHPGD+RV++A+
Sbjct: 1252 PKANSTYQERVDCLPEIFVQVWRHSEGKYAVIEGLCILARNPSLHPGDIRVVKAI 1306
>gi|312081788|ref|XP_003143174.1| hypothetical protein LOAG_07593 [Loa loa]
Length = 1450
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 189/726 (26%), Positives = 304/726 (41%), Gaps = 178/726 (24%)
Query: 264 GLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQ 323
G V K+++TP++V PE+ + NRV+R++ + + LR+ F D+D
Sbjct: 366 GYQRVRKVVITPTRVLLVVPELLMGNRVLRTFDKDGNGALRIQFRDDD------------ 413
Query: 324 ISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADI 383
G T +Y L SNSQ R+N + + A I
Sbjct: 414 -----GTPSTFVY--------------------LGSSNSQMRDNGCYFYDDGKGGQAHKI 448
Query: 384 RERMGDFREIKNVTKYAARLGQSFASSR------------------------EALHVDSN 419
RE++G F N+ K +R+GQ F ++ +A ++ S+
Sbjct: 449 REQLGKFDRC-NIPKMMSRMGQCFTQAKRCTVTLKRHKYNKTYDVIGGRDTNQAFYIFSD 507
Query: 420 -IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYKVTLR--------------NNMF--- 461
GK+S E AE +A G PS +QIR+ G K L NN+
Sbjct: 508 GAGKVSKEFAEKIALDIGLGTSVPSCYQIRHRGIKGVLSVDPSLDQRKHWAAANNVVDNN 567
Query: 462 KYKSESTSLDILANSKYQREGVARLRLDNVFERK-------QREVVARLDAI-------- 506
K ++ L +L + R + + R +++ LD +
Sbjct: 568 KMTNKQNDLAVLFRPSQDKFKAPRDEYIEIVKYSTPTSVCLNRPMISILDQVSGMQGFSV 627
Query: 507 ----------LTDSSKVQEALELMSSAENTNVLKEL----------LNCGYKPDAEPFLS 546
L D Q A LMS + L EL L G+ EPF
Sbjct: 628 HERIRKRIHDLLDIQMTQLADMLMSEEKCREKLNELPWRVNVSRLTLARGFALTQEPFFR 687
Query: 547 MMPQTFHASNLLELRTRARIFI--QNGQAMMGCLDEKGTLEYGQ---------------- 588
+ + L +L + +I + G++M G +DE G L++GQ
Sbjct: 688 SLLRANIKCTLKKLIAKVQIQVPPHFGRSMFGVMDETGQLQWGQVFVQCTRSIWLKTPSK 747
Query: 589 --------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSD 640
G +++ K PC+ GD+RV AVD+P LHH+VD V+FP G RPH +E +GSD
Sbjct: 748 SAAKIILVGKVMLTKNPCIVAGDVRVFEAVDIPELHHLVDVVVFPQHGPRPHPDEMAGSD 807
Query: 641 QDGEIYFVCWDHDRI-----PPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSL 695
DG+ Y V WD + + PPL F +A + KI+ + ++ ++F +YI DS+
Sbjct: 808 LDGDEYSVIWDPELMFEHNEPPLDFTKSA---SDNKIVEEEQVDLEMRKFFVNYIKQDSI 864
Query: 696 GIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRL----------- 744
G I NA +V A + S C ++ + S DF KTG A + +R
Sbjct: 865 GTISNAFLVNA--DLYGITSEVCINIARKHSKAVDFPKTGNAPSPLTRQWTQGKNGNILP 922
Query: 745 --RVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQF-YDTDME 801
R + +PDFM K + Y S +VG LYR + + + + A EG++ D D+E
Sbjct: 923 PERAERWPDFMCKNHEPSYISSRLVGQLYRRIRLLDDALNL--TAAMEGSVTIMLDPDLE 980
Query: 802 VNGFKE----VAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRD 857
G+++ +Q D Y + + ++M+ YGI+ E ++ S I + ++ RD
Sbjct: 981 YPGWEQYQNVAKIQLDS------YHSHIRSIMENYGIEDEGQLFSGFI-SVIRNRISDRD 1033
Query: 858 LEAISF 863
+ +SF
Sbjct: 1034 TDDMSF 1039
>gi|258569467|ref|XP_002543537.1| predicted protein [Uncinocarpus reesii 1704]
gi|237903807|gb|EEP78208.1| predicted protein [Uncinocarpus reesii 1704]
Length = 1004
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 149/569 (26%), Positives = 250/569 (43%), Gaps = 102/569 (17%)
Query: 266 IYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQIS 325
+ VN+ VTPS +Y GP I NRV+R Y + I++FLR+ FVDE ++Y PQ S
Sbjct: 429 VKVNRTQVTPSGIYLYGPNIETKNRVLRQYDNHINHFLRVEFVDEHGDRVY---YDPQAS 485
Query: 326 STNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA-----SRPELTA 380
Y+R L+NGI IG ++F L FS+S R T W A +
Sbjct: 486 LEE-----IFYQRFKGVLKNGIQIGGRRFSFLGFSHSSLRSQTCWFVAPFITNTGERFDV 540
Query: 381 ADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSNI-----------GKISAELAE 429
I + +G F I + +K AAR+GQ+F+ ++ ++ + + G++ ++
Sbjct: 541 ESIIQGLGSFDHIYSPSKLAARIGQTFSETQSSIKIPEDAVYFDEPDIKRNGRVFSDGVG 600
Query: 430 TVAKKCGYAIYT---------PSAFQIRYGGY---------------------------- 452
T++ Y I+ P+ FQIR+ G
Sbjct: 601 TMSPSIMYKIWKEYALRERVKPTIFQIRFAGNSLPSTFPCYPTANTVFCIILGAKGMVSL 660
Query: 453 -------KVTLRNNMFKYKSEST-SLDILANSKYQREGVARLRLDNVFERK--------- 495
++ LR +M K+K++ +++I + +L V E
Sbjct: 661 DSRLKGDQLKLRESMIKFKAKGAFNIEICGSGTRALPFYLNAQLIKVLEDLGVRPSAFID 720
Query: 496 -QREVVARLDAILTDSSKVQEALELMSSAENTNV---LKELLNCGYKPDAEPFLSMMPQT 551
Q + + RL ++ K + LE + A+ + ++ + D +PFL + Q
Sbjct: 721 LQTDEIDRLRSVEKSVIKAGQFLEQTNIAQGVRLPWLIQVIRGLELHHDQDPFLRSVIQL 780
Query: 552 FHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQGL-----------------MVVA 594
+ +L+ RARI + N + G +DE G L+ G+ ++V
Sbjct: 781 AVFLKMRDLKYRARIRVPNAVTLYGIMDESGYLKEGEIFCTFLTEGGVREILVRDRIIVT 840
Query: 595 KKPCLHPGDMRVLRAVDVPA---LHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWD 651
+ P LHPGD++ AVDVPA L + +CV+F G+R + SG D DG++Y + +D
Sbjct: 841 RSPALHPGDVQFANAVDVPATSPLRKLHNCVVFSQHGQRDLPSMLSGGDLDGDLYNIIYD 900
Query: 652 HDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPD 711
+P +P Y EK+L R V +D+ ++F ++ D LG I H A + +
Sbjct: 901 ERLMPRRTIEPADYPRVEEKLLNRRVVRDDIIDFFVTFMEQDQLGRIATIHQALADQKIE 960
Query: 712 KAMSNRCPDLVKLSSIVGDFSKTGVAATI 740
+ C L +L S DFSK+G+ ++
Sbjct: 961 GTLDQDCLLLAELHSTAVDFSKSGIPVSV 989
>gi|336273462|ref|XP_003351485.1| hypothetical protein SMAC_00026 [Sordaria macrospora k-hell]
Length = 1226
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 169/645 (26%), Positives = 287/645 (44%), Gaps = 118/645 (18%)
Query: 257 PAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKL- 315
P + GL + + LVTP+++ GPE+ NR++R +P+ D+FLR+ F +ED L
Sbjct: 403 PNDEIPSGLTKIYRALVTPTRIELHGPELEAMNRILRKFPEHQDHFLRVQFGEEDGQDLF 462
Query: 316 YSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASR 375
+++ +S + IY+R L GI +G + + L FS+S R ++LW+ S
Sbjct: 463 FNSTVSMDV----------IYQRFKDVLTKGISVGGRVYRFLGFSHSSLRAHSLWL--SA 510
Query: 376 PEL------TAADIRERMGDFREIKNVTKYAARLGQSFASS--REALH------------ 415
P + + +I E +GDFR I++ + AAR+GQ+F+ + +LH
Sbjct: 511 PFIHNGVLRISENIIEGLGDFRNIRSPARRAARIGQAFSETPYSVSLHDHGIAVIRQNDV 570
Query: 416 ------VDSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK-------------VTL 456
+GKIS E + ++ + P+ Q+R+ G K + +
Sbjct: 571 KRGKRVFSDGVGKISQGALEVIHREIPASKGYPNCLQVRWAGAKGMLALDARLPGRQICI 630
Query: 457 RNNMFKYKSE-----------STSLDILANSKYQREGVARLRLDNVFERKQREVVARLDA 505
R++M K++S S + ++ N + + F R Q + + RL A
Sbjct: 631 RDSMEKFRSHDEEHLEICDMASKPIPLMLNRQMIKILEDMGAPAKWFVRLQEKELQRLRA 690
Query: 506 ILTDSSKVQEALELMSSAENTNV---LKEL--LNCGYKPDAEPFLSMMPQTFHASNLLEL 560
I V L+L ++ ++ LK++ +N Y+ D FL + ++ L L
Sbjct: 691 ITNSVHNVAAFLKLQCVGDSVHLGQFLKDVHKMNIDYRKDQ--FLRGIVESVVLRELRLL 748
Query: 561 RTRARIFIQNGQAMMGCLDEKGTLEYGQ------------------GLMVVAKKPCLHPG 602
+ +ARI + G + G +DE G L G+ G +VV + P LHPG
Sbjct: 749 KHKARIPVPRGITLFGVMDETGLLREGEVYVTYETVDDRFKDPPTSGSVVVTRSPALHPG 808
Query: 603 DMRVLRAVDVPALH---HMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ 659
D+++ + V PA H + +C++F GER ++ SG D DG+ + V WD + L+
Sbjct: 809 DIQIAQNVIPPAGHPLRELKNCIVFSQNGERDLPSQLSGGDLDGDTFNVIWDQKIVSKLE 868
Query: 660 -FQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRC 718
F Y + L R++ +D+ ++F +++ D LG+I H++ A C
Sbjct: 869 TFAAADYPRVTPRELNREIESKDMADFFVEFMKADHLGVIAVRHMILADVRDQGTGDEDC 928
Query: 719 PDLVKLSSIVGDFSKTGVAATI-----PSRLR-----VKIYP----DFMEKQDK------ 758
L +L S DFSK+G+ I P R R VKI+ D E+ K
Sbjct: 929 LKLAELHSQAVDFSKSGIHVDITELPRPPRYRPDLPDVKIHDKSKIDLEEQYLKPDNDDD 988
Query: 759 ------TWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYD 797
+Y S+ ++G LYR V+ T IK F+D
Sbjct: 989 DDTPRYKYYASKKLLGKLYRAVDETKIWTRDIKLEVLSDGPSFWD 1033
>gi|380095764|emb|CCC05810.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1230
Score = 197 bits (501), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 167/649 (25%), Positives = 286/649 (44%), Gaps = 122/649 (18%)
Query: 257 PAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKL- 315
P + GL + + LVTP+++ GPE+ NR++R +P+ D+FLR+ F +ED L
Sbjct: 403 PNDEIPSGLTKIYRALVTPTRIELHGPELEAMNRILRKFPEHQDHFLRVQFGEEDGQDLF 462
Query: 316 YSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASR 375
+++ +S + IY+R L GI +G + + L FS+S R ++LW+ S
Sbjct: 463 FNSTVSMDV----------IYQRFKDVLTKGISVGGRVYRFLGFSHSSLRAHSLWL--SA 510
Query: 376 PEL------TAADIRERMGDFREIKNVTKYAARLGQSFASS--REALH------------ 415
P + + +I E +GDFR I++ + AAR+GQ+F+ + +LH
Sbjct: 511 PFIHNGVLRISENIIEGLGDFRNIRSPARRAARIGQAFSETPYSVSLHDHGIAVIRQNDV 570
Query: 416 ------VDSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK-------------VTL 456
+GKIS E + ++ + P+ Q+R+ G K + +
Sbjct: 571 KRGKRVFSDGVGKISQGALEVIHREIPASKGYPNCLQVRWAGAKGMLALDARLPGRQICI 630
Query: 457 RNNMFKYKSE-----------STSLDILANSKYQREGVARLRLDNVFERKQREVVARLDA 505
R++M K++S S + ++ N + + F R Q + + RL A
Sbjct: 631 RDSMEKFRSHDEEHLEICDMASKPIPLMLNRQMIKILEDMGAPAKWFVRLQEKELQRLRA 690
Query: 506 ILTDSSKVQEALELMSSAENTNV---LKEL--LNCGYKPDAEPFLSMMPQTFHASNLLEL 560
I V L+L ++ ++ LK++ +N Y+ D FL + ++ L L
Sbjct: 691 ITNSVHNVAAFLKLQCVGDSVHLGQFLKDVHKMNIDYRKDQ--FLRGIVESVVLRELRLL 748
Query: 561 RTRARIFIQNGQAMMGCLDEKGTLEYGQ------------------GLMVVAKKPCLHPG 602
+ +ARI + G + G +DE G L G+ G +VV + P LHPG
Sbjct: 749 KHKARIPVPRGITLFGVMDETGLLREGEVYVTYETVDDRFKDPPTSGSVVVTRSPALHPG 808
Query: 603 DMRVLRAVDVPALH---HMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ 659
D+++ + V PA H + +C++F GER ++ SG D DG+ + V WD + L+
Sbjct: 809 DIQIAQNVIPPAGHPLRELKNCIVFSQNGERDLPSQLSGGDLDGDTFNVIWDQKIVSKLE 868
Query: 660 -FQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRC 718
F Y + L R++ +D+ ++F +++ D LG+I H++ A C
Sbjct: 869 TFAAADYPRVTPRELNREIESKDMADFFVEFMKADHLGVIAVRHMILADVRDQGTGDEDC 928
Query: 719 PDLVKLSSIVGDFSKTGVAATIPSRLRVKIY-PDFM------EKQDKT------------ 759
L +L S DFSK+G+ I R Y PDF+ + DK+
Sbjct: 929 LKLAELHSQAVDFSKSGIHVDITELPRPPRYRPDFLVNRPDVKIHDKSKIDLEEQYLKPD 988
Query: 760 -----------WYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYD 797
+Y S+ ++G LYR V+ T IK F+D
Sbjct: 989 NDDDDDTPRYKYYASKKLLGKLYRAVDETKIWTRDIKLEVLSDGPSFWD 1037
>gi|341880571|gb|EGT36506.1| hypothetical protein CAEBREN_02888 [Caenorhabditis brenneri]
Length = 1640
Score = 197 bits (500), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 212/812 (26%), Positives = 335/812 (41%), Gaps = 190/812 (23%)
Query: 222 ALEMLFHLRE------C---CYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKIL 272
ALE L HL + C C D + RE R + +G S DG I V K++
Sbjct: 439 ALEDLIHLIDGRKRIGCITKCLDKICQKRE--RMQLING---LSEKEIHDGFQI-VRKVV 492
Query: 273 VTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERR 332
TP++V + PE + NRV+R + + LR++F D++ K+ + + T +
Sbjct: 493 FTPTRVIYVAPEAIMGNRVLRRFDKDGTKVLRITFRDDNNSKMRTNTTEELLEKTANK-- 550
Query: 333 TRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA-----------------SR 375
R G+ + ++ F L SNSQ R++ + +R
Sbjct: 551 ---------FFREGVRVANRDFGFLGCSNSQMRDSGAYFMLKATPGQLERFYRKYPRHTR 601
Query: 376 PELTA-----ADIRERMGDFREIKNVTKYAARLGQSFASSR------------------- 411
+L + ++R +G F E++NV K AR+GQ F SR
Sbjct: 602 EQLLSYKPWIDEVRLNLGKFSEVENVPKMIARMGQCFTQSRLTGVALERKNYCKIFDYEG 661
Query: 412 ------EALHVDSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGG-------------- 451
A +G +S A+ +A+ Y PS FQIR+ G
Sbjct: 662 GKNSKKAAYTFSDGVGMMSCRFAKIMAQSMNYDRSVPSCFQIRFRGNKGVIAMEPQLDDL 721
Query: 452 ---------------YKVTLRNNMFKYKSESTSLDILANSKYQREGVARLR------LDN 490
KV R + K++++ D + K L LD
Sbjct: 722 RNWSIRHQLDDLIPEIKVAFRPSQIKFQAKHIEGDQIEMVKPAGPVPVSLNKPLINILDQ 781
Query: 491 VFERK----QREVVARLDAILTDSSKVQE-ALELMSSAENTNVLKEL----------LNC 535
V E + + +V+R++ ++ +VQ A ++ N LKE
Sbjct: 782 VSEMQGVLCHKRMVSRIEELM--DRQVQSFAKQMNDETYCRNRLKEFPRRVDIDYLRTTW 839
Query: 536 GYKPDAEPFL-SMMPQTFHASNLLELRT-RARIFIQNGQAMMGCLDEKGTLEYGQ----- 588
G+ EPF S++ S +LR + I + G+ + G +DE G L+YGQ
Sbjct: 840 GFTLSREPFFRSLIKAAIKFSITKQLRKEQIPIPKELGRTLFGVVDETGRLQYGQVFVQY 899
Query: 589 ------------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLF 624
G ++++K PC+ PGD+R+ AVD+P LHHM D V+F
Sbjct: 900 SSNILNKHPVRLADQSVQNGVVVTGPILISKNPCIVPGDVRIFEAVDIPELHHMCDVVVF 959
Query: 625 PAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKI-LARDVTIED-- 681
P G RPH +E +GSD DG+ Y V WD + L++ A+ + EK + D D
Sbjct: 960 PQSGPRPHPDEMAGSDLDGDEYSVIWDPQML--LEWNEPAFDFSVEKQRIEWDPNEVDNL 1017
Query: 682 VEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAAT-- 739
+ E++ Y+ DS+G I NAH+ S+ MS C +L K +S DF+K+G+
Sbjct: 1018 MREFYVQYLKLDSVGQISNAHL--HNSDQYGLMSTVCMNLAKKNSQAVDFTKSGIPPAEM 1075
Query: 740 -------------IPSRLRVKIYPDF-MEKQDKTWYESQHIVGNLYREVNGIAPSTTTIK 785
+P +I PDF M + Y S + G L+RE I + I
Sbjct: 1076 TRDWRRDPITDEMVPPENPERI-PDFHMGNERNPQYVSPRLCGRLFREFQAID-NVIKIS 1133
Query: 786 SFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTE---YDNKLGNLMDYYGIKTEAEMLS 842
E D D+ + G++ ++ RTE Y+ +L ++M+ YGI TE E++S
Sbjct: 1134 EEKDELYDIEIDEDIMIYGYERFMVE-----ARTELANYNGQLRSIMETYGIATEGEIMS 1188
Query: 843 RCIMEMAKSFDKKRDLEAISFSVRSLRKEARA 874
CI+EM K D + +SF +L E R
Sbjct: 1189 GCIIEMRNRISDK-DQDDMSFFNTNLMIETRV 1219
>gi|170584472|ref|XP_001897023.1| RNA dependent RNA polymerase family protein [Brugia malayi]
gi|158595558|gb|EDP34101.1| RNA dependent RNA polymerase family protein [Brugia malayi]
Length = 1542
Score = 197 bits (500), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 183/709 (25%), Positives = 310/709 (43%), Gaps = 147/709 (20%)
Query: 261 LDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVL 320
L + + K++ TP ++ PE+ ++NRV+R + +E LR F D++ +L
Sbjct: 466 LPQNCVLIRKVIATPLRLLLLPPEVMMTNRVIRHFGEEYA--LRCVFRDDNGQRLVPKEF 523
Query: 321 SPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA------- 373
+ + ++ I + V L G+ I + ++ LA+SNSQ R+ +M++
Sbjct: 524 TR--GRSLQDQSLIIPDLVYRILGTGLRIASRHYQFLAWSNSQMRDGGCYMYSDAIVNDE 581
Query: 374 --SRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSR-------------------- 411
DIR MGDF K V K +R+GQ F ++
Sbjct: 582 VHGEVVCNVEDIRRWMGDFTASKTVPKLMSRMGQCFTQAQPTIKLKKDDWKVEDDIMGGI 641
Query: 412 ------EALHVDSNIGKISAELAETVAKKCGYAIY-TPSAFQIRYGGYK----------- 453
E + +G+IS + A+ +AK G +Y TPS +Q+R+ G+K
Sbjct: 642 VHPETGEVFNFSDGVGRISKKYADRIAKTLG--LYPTPSCYQVRFKGFKGVLCIDPLLDE 699
Query: 454 -----VTLRNNMFKYKSESTSLDILANSKYQREGVARLR------LDNVFERKQREV--- 499
+ R + K++ + S + KY RL LD V +++ R +
Sbjct: 700 LDQVNIVFRKSQKKFEEDDESAAEVEVVKYSMPSPVRLNRPLIMILDQVSDKQGRHLHKK 759
Query: 500 ------------VARLDAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSM 547
+ +L A++ D + E EL S +L + G EPF
Sbjct: 760 VCNRIHSLLELELDKLAAMMFDENVATE--ELSSRLSLPIDFHQLHSNGITFTNEPFFRS 817
Query: 548 MPQTFHASNLLELRTRARIFI--QNGQAMMGCLDEKGTLEYGQ----------------- 588
+ H N+ ++++IF+ G+ M G +D+ G L+YGQ
Sbjct: 818 LLTAIHRYNIKLHLSKSKIFLPCSMGRTMYGVIDDTGLLQYGQVFVQYSSSMQYVSAKKI 877
Query: 589 ---GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEI 645
G ++V K PC GD+R+ AV AL H+ D ++FP G RPH++E +GSD DG+
Sbjct: 878 VYTGSVMVTKNPCHVAGDVRMFEAVYQDALLHLCDVIVFPRYGPRPHSDEMAGSDLDGDE 937
Query: 646 YFVCWDHDRIPPLQFQ------------PTAY-TPAPEKILARDVTIEDVEEYFADYIVN 692
Y V +D + L F+ PT Y TPA T D+ ++F Y+
Sbjct: 938 YTVIFDKE----LFFENNERAMFFPNSLPTEYGTPA---------TTGDMIDFFLKYLSQ 984
Query: 693 DSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAAT-IPSRLRVKIYPD 751
DS+G + NAH++ C D+ + ++ DF KTGVAA + S + ++ PD
Sbjct: 985 DSIGRMSNAHLIIEV----------CDDIARKCAVAVDFPKTGVAAKPLLSHEQCEVMPD 1034
Query: 752 FMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKS--FAKEGAMQFYDTDMEVNGFKEVA 809
+M+ K Y S+ ++G LYR+ + + ++ FA Q D + F E +
Sbjct: 1035 YMQNMIKPSYRSKRLLGELYRKARRVEDISEIVQGTKFADYCDPQLCDESL----FHEQS 1090
Query: 810 -MQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRD 857
+ + + R EY +++ LMD YGI EA ++S M + + + ++D
Sbjct: 1091 ELIQESLRLRDEYHSRIQQLMDEYGISDEASVISGHSMTIKRIIEMEKD 1139
>gi|341880675|gb|EGT36610.1| hypothetical protein CAEBREN_29614 [Caenorhabditis brenneri]
Length = 1669
Score = 196 bits (499), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 192/747 (25%), Positives = 305/747 (40%), Gaps = 167/747 (22%)
Query: 264 GLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQ 323
G V KI+ TP++V + PE + NRV+R Y + LR++F D+D K+ + S
Sbjct: 502 GYQRVRKIIFTPTRVIYVAPETLMGNRVLRRYDHDGTRVLRITFRDDDNQKMRTNKTSTL 561
Query: 324 ISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFAS--------- 374
+ T V + L +GI + + F L SNSQ R+N +
Sbjct: 562 LEKT-----------VNNYLHSGITVAGRNFGYLGSSNSQMRDNGAYFMEKYSSSQCREY 610
Query: 375 ------------RPELTAADIRERMGDFREIKNVTKYAARLGQSFASSR-EALHVD---- 417
P++ AA R+ +G F I N+ K ARLGQ F SR +++D
Sbjct: 611 EAIHHVKPPITYNPKIQAA--RKNLGRFETIDNIPKMMARLGQCFTQSRLSGVNLDRCTY 668
Query: 418 --------------------SNIGKISAELAETVAKKCGYAIYTPSAFQIRYG------- 450
+G +S A+ V++ + PS FQ+
Sbjct: 669 MTMYDLTGGKNIKRDEYTFSDGVGMMSLRFAQMVSQVMDFGKGVPSCFQVFLNPIAPKTP 728
Query: 451 ---------------------------GYKVTLRNNMFKYKSESTSLDILANSKYQREGV 483
G R + K+ S+ D + KY
Sbjct: 729 IFSPLLDMIRKWSLEFALEKPSDDVAWGLNCVFRPSQIKFISKRHPRDQVEIVKYSSPVP 788
Query: 484 ARLR------LDNVFERK----QREVVARLDAILTDSSKVQEALELMSSAENTNVLKEL- 532
L LD V E + R V R++ +L D + A +++ N LKEL
Sbjct: 789 VSLNKPFINILDQVSEMQSLECHRRVTNRIEELL-DRQMLLFAQQMVDETFCRNRLKELP 847
Query: 533 ---------LNCGYKPDAEPFL-SMMPQTFHASNLLELRTRARIFIQN-GQAMMGCLDEK 581
G+ +EPF S++ + S +LR Q+ G++M+G +DE
Sbjct: 848 RRVDIDYLRTTWGFTLSSEPFFRSLIKASIKFSITKQLRKEQIPIPQDLGRSMLGVVDET 907
Query: 582 GTLEYGQ------------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHH 617
G L+YGQ G +++ K PC+ GD+R+ AVD+P LHH
Sbjct: 908 GRLQYGQIFVQYTKNLALKLPPKNAARQVLTGTVLLTKNPCIVAGDVRIFEAVDIPELHH 967
Query: 618 MVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDV 677
M D V+FP G RPH +E +GSD DG+ Y + WD + P +T +K ++
Sbjct: 968 MCDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLLLDKNEDPFDFTSEKQKSSFKEE 1027
Query: 678 TIEDV-EEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNR-CPDLVKLSSIVGDFSKTG 735
I+D+ E++ Y+ DS+G I N+H+ ++ ++ R C DL K + DF+K+G
Sbjct: 1028 EIDDLMREFYVKYLKLDSVGTISNSHL---HNSDQYGLNARVCMDLAKKNCQAVDFTKSG 1084
Query: 736 ---------------VAATIPSRLRVKIYPDFMEKQDKT-WYESQHIVGNLYREVNGIAP 779
IP R + PD+ D T Y S + G L+RE I
Sbjct: 1085 QPPDELERKWRKDEETGEMIPPE-RCERVPDYHMGNDHTPMYVSPRLCGKLFREFKAID- 1142
Query: 780 STTTIKSFAKEGAMQFYDTDMEVNGFKEV--AMQFDGFKYRTEYD-NKLGNLMDYYGIKT 836
I E D ++ + G++ + + + +Y + + L ++M+ YGIKT
Sbjct: 1143 DVLKISEERDEQVEISIDENIMMEGYESYMHSARDELSRYNAQLRVSFLDSMMENYGIKT 1202
Query: 837 EAEMLSRCIMEMAKSFDKKRDLEAISF 863
E E+ S CI++M K D + +SF
Sbjct: 1203 EGEVFSGCIVDMRNRISDK-DQDDMSF 1228
>gi|342878783|gb|EGU80072.1| hypothetical protein FOXB_09347 [Fusarium oxysporum Fo5176]
Length = 1277
Score = 196 bits (497), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 170/651 (26%), Positives = 268/651 (41%), Gaps = 121/651 (18%)
Query: 237 VSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYP 296
S + E+Y + + V + IY+ K +VTP++V GPE NRV+R Y
Sbjct: 408 TSIMNEEYEARAENPKRDRIYGVKIPDHQIYIFKAMVTPTRVLLSGPEPDSKNRVLRKYH 467
Query: 297 DEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFET 356
+ D FLR+ F +ED L P++ + I+ R + GI I +KF+
Sbjct: 468 ENNDYFLRVLFCEEDGQDLN---FHPKVDNEP------IFARFRHVMDEGITIAGRKFDF 518
Query: 357 LAFSNSQERENTLWMFASRPE-----LTAADIRERMGDFREIKNVTKYAARLGQSFASSR 411
L FS+S R ++ W A + T A I + +GDF EI+ K AAR+GQ+F+ +
Sbjct: 519 LGFSHSSLRSHSAWFSAPFTDSNFERQTPAAILQALGDFSEIRVPAKCAARIGQAFSETP 578
Query: 412 EALHV----------------------DSNIGKISAELAETVAKKCGYAIYTPSAFQIRY 449
A+ + +G IS E E + P+ QIR+
Sbjct: 579 YAIPIFETGICHRFIPDVKSEDGTRVFSDGVGTISREALEEIWPYLSMRAAAPTCLQIRW 638
Query: 450 GGYKVTL--------------RNNMFKYKSEST-SLDIL-ANSKYQREGVARLRL----- 488
GG K L + +M K+ S+ L I A+SK R + R +
Sbjct: 639 GGCKGMLSLDTRLKGRVFCIRQESMMKFPSDDLRELGICDASSKPLRLVLNRQMIKILED 698
Query: 489 ----DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNV---LKELLNCGYKPDA 541
++ F R Q + L D++ L+ + N + +K+L G
Sbjct: 699 MGTTNDWFFRLQNNALDILRNATADATNTSYFLDYQAIGVNMGLPKLVKQLEKMGIDYRR 758
Query: 542 EPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ------------- 588
+ FL + L L+ +ARI + G + G +DE G L+ +
Sbjct: 759 DKFLKSAVEHVVFRELRLLKHKARIPVDKGVTLFGVMDETGFLDADEVFVTYDKTHGVYR 818
Query: 589 ----------GLMVVAKKPCLHPGDMRVLRAVDVP---ALHHMVDCVLFPAKGERPHTNE 635
G ++V + P LHPGD++++ V P +L + +C++F KG+R +
Sbjct: 819 GRRINSTLKDGQIIVTRSPALHPGDIQIVNQVTPPQGHSLRSLQNCIVFSQKGKRDLPSM 878
Query: 636 CSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSL 695
SG D DG++Y + WD D +P F P Y K L R V +D+ ++F D++ D L
Sbjct: 879 LSGGDLDGDLYNIIWDPDALPDNYFLPADYPRVKPKPLDRPVKPQDIADFFVDFMRTDIL 938
Query: 696 GIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIY-PDF-- 752
G+I HVV A C L + S DFSKTG+ + + + + PDF
Sbjct: 939 GMIATRHVVLADYHEQGTTHPDCISLAGMHSTAVDFSKTGIPVDVKALPKNPPFRPDFLA 998
Query: 753 ----------------------------MEKQDKTWYESQHIVGNLYREVN 775
M + +YES I+G LYR V+
Sbjct: 999 AAPPLKTYEKGQIAHLRDDDEDDNADDGMARYKAKYYESDKILGRLYRNVD 1049
>gi|341885452|gb|EGT41387.1| hypothetical protein CAEBREN_32717 [Caenorhabditis brenneri]
Length = 1562
Score = 195 bits (496), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 173/686 (25%), Positives = 296/686 (43%), Gaps = 158/686 (23%)
Query: 258 AVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYS 317
A L + V K++VTPS++ PE+ + NR+VR + D LR F D++LG+
Sbjct: 669 AKPLPKNCVQVAKVIVTPSRILLMAPEVMMVNRIVRRFGP--DYALRCVFRDDNLGR--- 723
Query: 318 TVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE 377
+SNSQ R+ +++A R +
Sbjct: 724 -----------------------------------------WSNSQMRDQGCYLYAPRVD 742
Query: 378 L-------TAADIRERMGDFREIKNVTKYAARLGQSFASSREALHVD------------- 417
T +IR+ MGDFRE +V K +R+GQ F ++ + ++
Sbjct: 743 PGTGRVSGTVEEIRKWMGDFREAVSVPKMMSRMGQCFTQAQPTVRLERRHWIVEPDVEGG 802
Query: 418 --------SNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK---------------- 453
G+IS +LA + K TP+ FQ+R+ G+K
Sbjct: 803 LSGKYCFSDGCGRISVKLANHITKILELK-ETPACFQVRFKGFKGILVIDPTIDDIIGMP 861
Query: 454 -VTLRNN-----------------MFKYKSESTS------LDILANSKYQREGVARLRLD 489
V R + + KY S + IL ++ + R+
Sbjct: 862 KVVFRKSQQKFGEGGGDQQDEYLEVVKYAMPSPVCLNRPFITILDQVSAKQSASSHRRIT 921
Query: 490 N-VFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMM 548
N + +RE+ + + +L ++ +E + + + N K + G++ +P + M
Sbjct: 922 NRIHYYLERELCSLSNMLLNENQAAEELVNRTNLPIDWN--KASKHAGFRLSKDPLIRSM 979
Query: 549 PQTFHASNLLELRTRARIFIQN--GQAMMGCLDEKGTLEYGQ------------------ 588
+ + N++ ++A+IF+ G++M G +DE G L+YGQ
Sbjct: 980 LFSIYRYNIIHHISKAKIFLPPDLGRSMYGVVDETGLLQYGQVFIQYSQSIRQTSATPIL 1039
Query: 589 --GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIY 646
G +++ K PC PGD+RV AV PAL H+VD V+FP G RPH +E +GSD DG+ Y
Sbjct: 1040 KTGKVLITKNPCHVPGDVRVFEAVWQPALAHLVDVVVFPRHGPRPHPDEMAGSDLDGDEY 1099
Query: 647 FVCWDHDRIPPLQFQPTAY--TPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVV 704
+ WD + + + Y + APE+ ++ T +D+ E+F Y+ DS+G + NAH+
Sbjct: 1100 SIIWDQEMLLDYNEEAMIYPSSTAPEE--DKEPTTDDMVEFFLRYLQQDSIGRMSNAHLT 1157
Query: 705 YAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAA-TIPSRLRVKIYPDFMEKQDKTWYES 763
YA + C ++ ++ DF K+GV A + S + ++ PD+M K Y S
Sbjct: 1158 YA--DLHGLFHENCRNIALKCAVAVDFPKSGVPAEPLASFEQCEMTPDYMATGGKPMYYS 1215
Query: 764 QHIVGNLYREVNGIAPSTTTIKSFAKEGAM--QFYDT-----DMEVNGFKEVAMQFDGFK 816
+ G L+R+ + ++ + G++ YD D +V F A
Sbjct: 1216 PRLNGQLHRKARKVE---EVLEEYETRGSIFEGEYDKIICPDDADV-FFGSEAKLVQAMM 1271
Query: 817 YRTEYDNKLGNLMDYYGIKTEAEMLS 842
R EY +++ L+D YGI+ EA ++S
Sbjct: 1272 IRDEYIDRMQQLLDEYGIEDEASVVS 1297
>gi|209978362|gb|ACJ04634.1| RNA-dependent RNA polymerase [Cryptococcus neoformans var. grubii]
Length = 1120
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 167/578 (28%), Positives = 272/578 (47%), Gaps = 77/578 (13%)
Query: 265 LIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQI 324
L+ + +LVTP+++ P+ SN V R Y D++D +R+ F DE+ +L+ +
Sbjct: 367 LVLIRTVLVTPTRLLIGPPQYEPSNSVTRRYHDKLDGIIRVQFTDEE-DRLFIADYMKLV 425
Query: 325 SSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIR 384
S N I RV L+ G+VIG + F +A S SQ++E+ +W F + + ++R
Sbjct: 426 DSINPA--VGIMARVRRALQFGLVIGGETFYPVASSASQQKEHAMW-FINNKVIDGLELR 482
Query: 385 ERMGDFREIKNVTKYAARLGQSFASSREALHVDSNIGKISAEL---AETVAKKCGYA--- 438
MG E V K+AAR+G F++SR +++ NIG+ ++ CG A
Sbjct: 483 NWMGTVHETV-VAKHAARMGLPFSTSR-IVNMKINIGEELPDIERNGRCFTDGCGIAGRE 540
Query: 439 ---------------IYTPSAFQIRYGG--------------YKVTLRNNMFKYKSESTS 469
PSA Q R GG Y++ LR +M K++S+
Sbjct: 541 VLNQAALALNEKVGINAQPSAIQFRLGGAKGVLSDWSQLVSEYEIRLRPSMIKFRSDLAD 600
Query: 470 LDILANSKYQR-------------EGVARLRLDNVFERKQREVVARLDAILTDSSKVQEA 516
L+++ +KYQ GV + +FE ++ D + ++ V E
Sbjct: 601 LNVIRIAKYQAAFLNRQFINIMCANGVPHELIIGIFEDAIADIKGFKDRVWNNA--VTEN 658
Query: 517 LELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMG 576
+ + + N L +L+ G+ + P L + L +L+ RAR+ + +G ++G
Sbjct: 659 DQQLIALCNDFPLAQLIRSGF--NENPLLLDVAAIIECRALQDLKWRARVKLSDGVYLIG 716
Query: 577 CLDEKGTLEYGQ-------------GLMVVAKKPCLHPG-DMRVLRAVDVPALHHMVDCV 622
DE GTL+ G+ ++V C P D+R AVD P L H+ + +
Sbjct: 717 IADETGTLKEGEVFCQFQENDDSPPKVVVNEVLVCRAPACDVRRAWAVDRPELRHLKNVI 776
Query: 623 LFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ-FQPTAYTPAPEKILARDVTIED 681
+F +G R + G D DG+ Y + WD + L+ + P Y AP+ I + VT +
Sbjct: 777 VFSTQGMRDMPSMLGGGDLDGDDYTLIWDQRFVQSLKVYDPMDYE-APDPISVKHVTQKH 835
Query: 682 VEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIP 741
+ E F Y++ND LG + N H+ A S+ RC L ++ S+ DF+KTG AA +
Sbjct: 836 LNENFVQYVLNDVLGQVDNCHL--ALSDMYTPFDPRCLHLSEIHSVSVDFAKTGQAAALD 893
Query: 742 SRLRVKIYPDFMEKQD-KTWYESQHIVGNLYREVNGIA 778
LR K +PDFM+K D K YES+ I+G ++R V A
Sbjct: 894 PSLRPKEWPDFMDKDDVKVVYESKGILGKIFRIVQADA 931
>gi|380493792|emb|CCF33621.1| RNA dependent RNA polymerase, partial [Colletotrichum higginsianum]
Length = 1278
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 162/624 (25%), Positives = 269/624 (43%), Gaps = 128/624 (20%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
V K +VTP+++ GPE NR++R +P++ F+R++F DED G L+ +P++S
Sbjct: 443 VFKAMVTPTRITLHGPEPEPMNRILRRFPNQTSYFIRVTFCDEDGGDLF---FNPRVSYD 499
Query: 328 NGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTA-----AD 382
+I++R L GI I + ++ L FS+S R ++ W A + +
Sbjct: 500 ------QIFDRYREVLNGGIPIAGRIYQFLGFSHSSLRSHSAWFSAPFVDDGGKLQLYGN 553
Query: 383 IRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN----------------------- 419
I + +GDF I+ K AAR+GQ+F+ + + + N
Sbjct: 554 IIKALGDFEHIEIPAKCAARIGQAFSETPTFIKLAENRIRHSNIPDVKSQDGDIERVFSD 613
Query: 420 -IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYKVTL--------------RNNMFKYK 464
+G IS ++ E V + P+ QIR+GG K L R +M K+
Sbjct: 614 GVGTISQDVLELVWPRLPRGSLIPTCLQIRWGGVKGMLSLDSRLMGRTICVRRESMEKFP 673
Query: 465 SE-----------STSLDILANSKYQREGVARLRLD-NVFERKQREVVARLDAILTDSSK 512
S S L ++ N + + + L +D N+F + Q++ V RL A+ D+
Sbjct: 674 SNDVENLEICDAASRPLKLVLNRQMIKI-MEDLGVDSNLFLQLQKKEVDRLRAVTADAYN 732
Query: 513 VQEALELMSSAEN---TNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQ 569
L L +++K L N G + FL + ++ L L+ +ARI +
Sbjct: 733 TGTFLHLQGVGSTFFLPSLIKSLKNYGIDYRRDSFLRAVVESTVLQELRLLKHKARIPVP 792
Query: 570 NGQAMMGCLDEKGTLEYGQ----------------------GLMVVAKKPCLHPGDMRVL 607
G + G +DE G L G+ G ++V + P LHPGD++ +
Sbjct: 793 EGATLFGIMDETGFLREGEVYVCYDTYKRPGKSPMKNSLRDGPVLVTRSPALHPGDIQYV 852
Query: 608 RAVDVPALH---HMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTA 664
P H ++ +C+ F +G R + SG D DG++Y + WD P F+
Sbjct: 853 NMRTPPPGHPLRNLRNCIAFSQRGHRDLPSMLSGGDLDGDLYNIIWDKAAAPKRTFKAAD 912
Query: 665 YTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKL 724
Y + L R V +D+ +F D++ +D LG+I H++ + +P + C L L
Sbjct: 913 YPRVTPEPLGRPVERKDMANWFVDFMKSDVLGLIATRHLILSDQDPVGTLGQDCLKLAGL 972
Query: 725 SSIVGDFSKTGVAA---TIPSRLRVKIYPDFM------EKQDKT---------------- 759
S DFSKTGVA IP + + PDF+ + D+T
Sbjct: 973 HSTAVDFSKTGVAVEPRDIPKAPQFR--PDFLAPAPPAQLYDRTQINFLGRDEGVDDDDE 1030
Query: 760 --------WYESQHIVGNLYREVN 775
+Y S+ I+G LYR V+
Sbjct: 1031 DAAGPNHKYYRSEKILGVLYRNVD 1054
>gi|210148496|gb|ACJ09171.1| RNA-dependent RNA polymerase [Cryptococcus neoformans var. grubii]
Length = 1120
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 167/578 (28%), Positives = 272/578 (47%), Gaps = 77/578 (13%)
Query: 265 LIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQI 324
L+ + +LVTP+++ P+ SN V R Y D++D +R+ F DE+ +L+ +
Sbjct: 367 LVLIRTVLVTPTRLLIGPPQYEPSNSVTRRYHDKLDGIIRVQFTDEE-DRLFIADYMKLV 425
Query: 325 SSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIR 384
S N I RV L+ G+VIG + F +A S SQ++E+ +W F + + ++R
Sbjct: 426 DSINPA--VGIMARVRRALQFGLVIGGETFYPVASSASQQKEHAMW-FINNKVIDGLELR 482
Query: 385 ERMGDFREIKNVTKYAARLGQSFASSREALHVDSNIGKISAEL---AETVAKKCGYA--- 438
MG E V K+AAR+G F++SR +++ NIG+ ++ CG A
Sbjct: 483 NWMGTVHETV-VAKHAARMGLPFSTSR-IVNMKINIGEELPDIERNGRCFTDGCGIAGRE 540
Query: 439 ---------------IYTPSAFQIRYGG--------------YKVTLRNNMFKYKSESTS 469
PSA Q R GG Y++ LR +M K++S+
Sbjct: 541 VLNQAALALNEKVGINAQPSAIQFRLGGAKGVLSDWSQLVSEYEIRLRPSMIKFRSDLAD 600
Query: 470 LDILANSKYQR-------------EGVARLRLDNVFERKQREVVARLDAILTDSSKVQEA 516
L+++ +KYQ GV + +FE ++ D + ++ V E
Sbjct: 601 LNVIRIAKYQAAFLNRQFINIMCANGVPHELIIGIFEDAIADIKGFKDRVWNNA--VTEN 658
Query: 517 LELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMG 576
+ + + N L +L+ G+ + P L + L +L+ RAR+ + +G ++G
Sbjct: 659 DQQLIALCNDFPLAQLIRSGF--NENPLLLDVAAIIECRALQDLKWRARVKLSDGVYLIG 716
Query: 577 CLDEKGTLEYGQ-------------GLMVVAKKPCLHPG-DMRVLRAVDVPALHHMVDCV 622
DE GTL+ G+ ++V C P D+R AVD P L H+ + +
Sbjct: 717 IADETGTLKEGEVFCQFQENDDSPPKVVVNEVLVCRAPACDVRRAWAVDRPELRHLKNVI 776
Query: 623 LFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ-FQPTAYTPAPEKILARDVTIED 681
+F +G R + G D DG+ Y + WD + L+ + P Y AP+ I + VT +
Sbjct: 777 VFSTQGMRDMPSMLGGGDLDGDDYTLIWDQRFVQSLKVYDPMDYE-APDPISVKHVTQKH 835
Query: 682 VEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIP 741
+ E F Y++ND LG + N H+ A S+ RC L ++ S+ DF+KTG AA +
Sbjct: 836 LNENFVQYVLNDVLGQVDNCHL--ALSDMYTPFDPRCLHLSEIHSVSVDFAKTGQAAALD 893
Query: 742 SRLRVKIYPDFMEKQD-KTWYESQHIVGNLYREVNGIA 778
LR K +PDFM+K D K YES+ I+G ++R V A
Sbjct: 894 PSLRPKEWPDFMDKDDVKVVYESKGILGKIFRIVQADA 931
>gi|240276859|gb|EER40370.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus H143]
Length = 1240
Score = 194 bits (494), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 170/619 (27%), Positives = 272/619 (43%), Gaps = 117/619 (18%)
Query: 266 IYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQIS 325
I +++ +TP Y GP NRV+R Y +D+FLR+ FVDE + P+ S
Sbjct: 419 ISIHRAQITPCGTYLDGPHAETKNRVLRHYSSHVDHFLRVEFVDETGDPVR---YDPRAS 475
Query: 326 STNGERRTRIYE-RVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA----SRPELTA 380
I+E R + L++GI I +KFE L FS+S R T W A R A
Sbjct: 476 ID------MIFESRFKTVLKSGINIAGRKFEFLGFSHSSLRSQTCWFVAPFYKDRILYNA 529
Query: 381 ADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSNI----------GKISAELAET 430
+ I + +G F I++ K AAR+GQ+F+ + ++ + G++ ++ T
Sbjct: 530 STIIQNLGRFDHIQSPAKQAARIGQTFSDTLTSIPISDKYISIGKDVERNGRVFSDGVGT 589
Query: 431 VAKKCGYAIYT---------PSAFQIRYGGYK-------------VTLRNNMFKYKSEST 468
++ Y I+ P+ FQIR G K + LR +M K+ ++
Sbjct: 590 ISPSVMYMIWKDHSLRTVVKPTVFQIRLAGAKGMISLDSRKKGKSLVLRPSMIKFHLPNS 649
Query: 469 ----SLDILANSKYQREGVARLRL----------DNVFERKQREVVARLDAILTDSSKVQ 514
+++I + +L D+VF R Q + ++RL A T ++K
Sbjct: 650 YNAFNIEICGSGLKPLPFFLNAQLIKILEDLGVDDSVFLRLQADEISRLRATATSTAKAA 709
Query: 515 EALELMSSAENTNVLKELLNC----GYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQN 570
LE + A++ L L+N G + + FL + + L +L+ RARI + N
Sbjct: 710 RFLEDTNIAKSVG-LPWLINILEGFGLRHSNDEFLRRVMELAVLIKLRDLKYRARIRVPN 768
Query: 571 GQAMMGCLDEKGTLEYGQGL-----------------MVVAKKPCLHPGDMRVLRAVDVP 613
+ G +DE G L+ G+ +VV + P +HPGD+++ RAVDVP
Sbjct: 769 AVTLFGIMDETGILKEGEVFCTSLSDKGVREVLVNPRVVVTRSPAMHPGDVQIARAVDVP 828
Query: 614 A---LHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPE 670
A L + +C+ F G R + SG D DG++Y V +D+ +P +P Y E
Sbjct: 829 ADSPLRQLHNCIAFSQHGHRDLPSMLSGGDLDGDLYNVIFDNTLLPKRIARPAEYPRVQE 888
Query: 671 KILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGD 730
K+L R V ED+ ++F ++ D LG I H A P C L +L S D
Sbjct: 889 KVLGRAVVREDIIDFFVTFMQQDQLGRIATIHQALADRRPLGTFDPECLLLAELHSTAVD 948
Query: 731 FSKTGVA---ATIPS-------------RLRVKIYPDFME----------------KQDK 758
FSKTGV A IP R+R+ +E +
Sbjct: 949 FSKTGVPVDLARIPKFPSCRPDFQAPSPRIRIAENLSLLEGDMDAVQDGGDEDDDERPAV 1008
Query: 759 TWYESQHIVGNLYREVNGI 777
+Y+S++I+G LYR ++ +
Sbjct: 1009 RFYKSENILGKLYRSIDEV 1027
>gi|268561564|ref|XP_002646475.1| Hypothetical protein CBG19448 [Caenorhabditis briggsae]
Length = 1606
Score = 194 bits (494), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 189/751 (25%), Positives = 305/751 (40%), Gaps = 175/751 (23%)
Query: 264 GLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQ 323
G V K++ TP++V + PE + NRV+R + + +R++F D++ ++ +
Sbjct: 462 GFQRVRKVIFTPTRVIYISPETIMGNRVLRKFDKDGTRVIRITFRDDNNNQMRANDTGDL 521
Query: 324 ISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA---------- 373
+ T + L GI I +++F L SNSQ R+N + A
Sbjct: 522 LEMTANK-----------FLGEGIRIANREFGFLGCSNSQMRDNGAYFMAKYSQSQLEKF 570
Query: 374 --SRP---ELTA-----ADIRERMGDFREIKNVTKYAARLGQSFASSR------------ 411
+RP +L A ++R+ +G F +++N+ K AR+GQ F SR
Sbjct: 571 LRTRPNEAQLKAFKPRIMEVRKHLGKFDKLENIPKLMARMGQCFTQSRLTGVELNRSDYI 630
Query: 412 -------------EALHVDSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK----- 453
+ +G +S A+ VA PS+FQIR+ G K
Sbjct: 631 RIPDFEGGKNLAGKPYTFSDGVGIMSYRFAQKVAHAMQMGNSVPSSFQIRFRGMKGMIAI 690
Query: 454 --------------------------VTLRNNMFKYKSESTSLDILANSKYQREGVARLR 487
R + K++++S D + KY + L
Sbjct: 691 DPYMDLIHQWNVSYDIPYQVPNLELKCAFRPSQIKFEAKSLPGDQIEMVKYSAPVMVALN 750
Query: 488 ------LDNVFERKQRE----VVARLDAILTDSSKVQEALELMSSAENTNVLKELLN--- 534
LD V E + E V R++ ++ D + A ++ N LKE
Sbjct: 751 KPFINILDQVSEMQSLECHKRVTGRVEELM-DRQILSFARQMNDETYCRNRLKEFPRRID 809
Query: 535 -------CGYKPDAEPFL-SMMPQTFHASNLLELRT-RARIFIQNGQAMMGCLDEKGTLE 585
G+ +EPF S++ + S +LR + +I + G++M+G +DE G L+
Sbjct: 810 IDFLRPMWGFTLSSEPFFRSLIKASIKFSITKQLRKEQIQIPKELGRSMLGVVDETGQLQ 869
Query: 586 YGQ-----------------------------GLMVVAKKPCLHPGDMRVLRAVDVPALH 616
YGQ G ++V K PC+ GD+RV AVD+P LH
Sbjct: 870 YGQIFVQYTQNAAKKLPMRGPNMTVPDAKIVTGTVLVTKNPCIVTGDVRVFEAVDIPELH 929
Query: 617 HMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRI-----PPLQFQPTAYTPAPEK 671
HM D V+FP G RPH +E +GSD DG+ Y + WD + P F P P
Sbjct: 930 HMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLLLDRNEDPFDFSVEKKDPVPFD 989
Query: 672 ILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDF 731
D + D ++ Y+ DS+G I N H+ S+ S C +L K +S DF
Sbjct: 990 FDQIDDLMRD---FYVKYLKLDSVGTISNNHL--HNSDQYGLTSTVCMNLAKKNSQAVDF 1044
Query: 732 SKTG---------------VAATIPSRLRVKIYPDF-MEKQDKTWYESQHIVGNLYREVN 775
+K+G IP +I PD+ M + Y S + G L+RE
Sbjct: 1045 TKSGDPPAPLTREWGKDPETGENIPPEGAERI-PDYHMANERVPVYVSPRLCGRLFREFQ 1103
Query: 776 GIAPSTTTIKSFAKEGAMQF---YDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYY 832
I + ++E QF D + + G++ A K Y+ +L +M+ Y
Sbjct: 1104 AI----DNVIKISEERDEQFEVQIDETLMIQGYE--AYMEGARKDLANYNGQLRAIMETY 1157
Query: 833 GIKTEAEMLSRCIMEMAKSFDKKRDLEAISF 863
GI+TE E++S CI++M + + +SF
Sbjct: 1158 GIRTEGEIMSDCILDMRNRISDRDQDDKMSF 1188
>gi|402078468|gb|EJT73733.1| RNA-dependent RNA polymerase [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1287
Score = 194 bits (494), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 157/624 (25%), Positives = 259/624 (41%), Gaps = 124/624 (19%)
Query: 265 LIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQI 324
L + + +VTP+++ GPE+ NRV+R +P D FLR+ F DE S +
Sbjct: 440 LTNIFRAVVTPTRITLHGPEVETKNRVLRKHPGHQDYFLRVQFCDEG---------SRDL 490
Query: 325 SSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFAS-RPELTAA-- 381
G R+Y+R L +GI + + + L FS+S R +++W A+ R + T
Sbjct: 491 RFETGVSVERVYQRFKDVLLSGIRLPGRIYNFLGFSHSSLRTSSVWFCAAFRDKETGKLV 550
Query: 382 ---DIRERMGDFREIKNVTKYAARLGQSFASSREAL-----------HV----------- 416
I E +G+F I+ K AAR+GQ+F+ + + HV
Sbjct: 551 NHKSIIEGLGEFGHIRCPAKLAARIGQAFSETPSVVPLSGYSDILIKHVPDIYSADGRRC 610
Query: 417 -DSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK------VTLRNNMFKYKSESTS 469
+G +S E+ + P+ FQIR+ G K TL + ++
Sbjct: 611 FSDGVGSVSEEMMRIIWAHVPMKKNAPTCFQIRHAGCKGMLALDTTLSGKIIYFRDSMKK 670
Query: 470 LDILANSKYQREGVARLRLDNVFERKQREVVARLDA-----ILTDSSKVQEALELMSSAE 524
D + + + V R+ +++ + A + S +++E + ++A
Sbjct: 671 FDSIDQEDLEICDTGSKAIPLVLNRQMIKILEDMGADHKWFLKLQSYRLKELQAVTANAY 730
Query: 525 NTNVLKELLNCG------------------YKPDAEPFLSMMPQTFHASNLLELRTRARI 566
N N G YK D PFL + + L L+ +ARI
Sbjct: 731 NVQTFLHTANVGQPISLGKFIYWAHLNGMDYKKD--PFLRGVVEALVLQELRLLKHKARI 788
Query: 567 FIQNGQAMMGCLDEKGTLEYGQ-----------GL---------MVVAKKPCLHPGDMRV 606
+ G+ + G +DE G L GQ G ++V + P LHPGD+++
Sbjct: 789 PVSKGKTLFGLIDETGLLREGQVYVTFASEKIPGFQKPPRHSQSVIVTRSPALHPGDIQI 848
Query: 607 LRAVDVPALHHMV---DCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPT 663
+ + P H + + + F G R + SG D DG+IY + WD + +P +F P
Sbjct: 849 VTNIIPPPDHPLAAHRNSIFFSRHGSRDLPSMLSGGDLDGDIYNIIWDKEVLPKQRFHPA 908
Query: 664 AYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVK 723
Y+ AP + + R V ED+ ++F D++ ND+LG I H++ A + + C L +
Sbjct: 909 DYSNAPPQDIGRPVEREDIVQHFVDFMKNDNLGAIATRHMILADQMVEGTLHPDCQKLAE 968
Query: 724 LSSIVGDFSKTGVAATIPSRLRV-KIYPDFMEK------QDK------------------ 758
L S DFSKTG+ + R + PDF+ DK
Sbjct: 969 LHSTAVDFSKTGIPVDMKELPRTNRFRPDFLSPGPIANLHDKDEILMEQYRAPDPEEELE 1028
Query: 759 -------TWYESQHIVGNLYREVN 775
+Y+S I+G LYREV+
Sbjct: 1029 HGEPPRFKYYKSGKILGKLYREVD 1052
>gi|405121923|gb|AFR96691.1| hypothetical protein CNAG_03466 [Cryptococcus neoformans var.
grubii H99]
Length = 1120
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 167/578 (28%), Positives = 271/578 (46%), Gaps = 77/578 (13%)
Query: 265 LIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQI 324
L+ + +LVTP+++ P+ SN V R Y D++D +R+ F DE+ +L+ +
Sbjct: 367 LVLIRTVLVTPTRLLIGPPQYEPSNSVTRRYHDKLDGIIRVQFTDEE-DRLFIADYMKLV 425
Query: 325 SSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIR 384
S N I RV L+ G+VIG + F +A S SQ++E+ +W F + + ++R
Sbjct: 426 DSINPA--VGIMARVRRALQFGLVIGGETFYPVASSASQQKEHAMW-FINNKVIDGLELR 482
Query: 385 ERMGDFREIKNVTKYAARLGQSFASSREALHVDSNIGKISAEL---AETVAKKCGYA--- 438
MG E V K+AAR+G F++SR +++ NIG+ ++ CG A
Sbjct: 483 NWMGTVHETV-VAKHAARMGLPFSTSR-IVNMKINIGEELPDIERNGRCFTDGCGIAGRE 540
Query: 439 ---------------IYTPSAFQIRYGG--------------YKVTLRNNMFKYKSESTS 469
PSA Q R GG Y++ LR +M K++S+
Sbjct: 541 VLNQAALALNEKVGINAQPSAIQFRLGGAKGVLSDWSQLVSEYEIRLRPSMIKFRSDLAD 600
Query: 470 LDILANSKYQR-------------EGVARLRLDNVFERKQREVVARLDAILTDSSKVQEA 516
L+++ +KYQ GV + +FE ++ D + ++ V E
Sbjct: 601 LNVIRIAKYQAAFLNRQFINIMCANGVPHELIIGIFEDAIADIKGFKDRVWNNA--VTEN 658
Query: 517 LELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMG 576
+ + + N L +L+ G+ + P L + L +L+ RAR+ + +G ++G
Sbjct: 659 DQQLIALCNDFPLAQLIRSGF--NENPLLLDVAAIIECRALQDLKWRARVKLSDGVYLIG 716
Query: 577 CLDEKGTLEYGQ-------------GLMVVAKKPCLHPG-DMRVLRAVDVPALHHMVDCV 622
DE GTL+ G+ ++V C P D+R AVD P L H+ + +
Sbjct: 717 IADETGTLKEGEVFCQFQENDDSPPKVVVNEVLVCRAPACDVRRAWAVDRPELRHLKNVI 776
Query: 623 LFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ-FQPTAYTPAPEKILARDVTIED 681
+F +G R + G D DG+ Y + WD + L+ + P Y AP+ I + VT +
Sbjct: 777 VFSTQGMRDMPSMLGGGDLDGDDYTLIWDQRFVQSLKVYDPMDYE-APDPISVKHVTQKH 835
Query: 682 VEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIP 741
+ E F Y++ND LG + N H+ A S+ RC L ++ S DF+KTG AA +
Sbjct: 836 LNENFVQYVLNDVLGQVDNCHL--ALSDMYTPFDPRCLHLSEIHSTAVDFAKTGQAAALD 893
Query: 742 SRLRVKIYPDFMEKQD-KTWYESQHIVGNLYREVNGIA 778
LR K +PDFM+K D K YES+ I+G ++R V A
Sbjct: 894 PSLRPKEWPDFMDKDDVKVVYESKGILGKIFRIVQADA 931
>gi|299470095|emb|CBN78124.1| RNA-dependent RNA polymerase 1 [Ectocarpus siliculosus]
Length = 1102
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 171/616 (27%), Positives = 268/616 (43%), Gaps = 125/616 (20%)
Query: 264 GLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKL-YSTVLSP 322
G + V + VTP +V PE +SN V R + + D FL ++FVDE++G+L S +L+P
Sbjct: 260 GNVMVPRASVTPLRVVCQPPEQEMSNGVTRRFAEHSDRFLGVNFVDENMGRLQLSPLLAP 319
Query: 323 Q------ISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRP 376
++ T +R + + +V L V+ SQ R + + +A
Sbjct: 320 SDCWSIGLACTPFGQRHQTFLKVHPALLVSCVVLSPPVRP---RKSQLRGHACFFYAEGG 376
Query: 377 EL-------TAADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSNI--------- 420
E+ + + MGD I V K+AARLGQS +S+ + V +
Sbjct: 377 EVDQISESGSEPAVFHWMGDMSGIDVVGKHAARLGQSLSSTTSTVEVPPALKKLVPDKKA 436
Query: 421 ---------GKISAELAETVAKKCGYAIY--TPSAFQIRYGG------------------ 451
G +S LA VA G+++ PSAFQIR GG
Sbjct: 437 GPYEFTDGCGMMSEGLAREVADVLGHSVSQPPPSAFQIRMGGCKGMLAVWPDSVMRSVSG 496
Query: 452 ---YKVTLRNNMFKYKSESTSLDILANSK-----YQREGVARLRL----DNVFERKQREV 499
YKV +R +M K+ SE +L+++ ++ R+ + L D V E + +
Sbjct: 497 RGGYKVLVRPSMQKFPSERNTLEVIQYARQLPCYLNRQFITLLGTLGVPDKVIEERYSAM 556
Query: 500 VARLDAIL----TDSSKVQEALEL---MSSAENTNVLK--------ELLNCGYKPDAEPF 544
V+ LD +L +D ++ + AL ++S T + ++ G EPF
Sbjct: 557 VSTLDKVLRTMLSDPAEAEMALVRYYNITSGGKTGRKQVGPLWEALAMVRAGINIRTEPF 616
Query: 545 LSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQGLMVVAKKPCLHPGDM 604
L + +++LR R RIF+ + ++G +DE G L+ GQ D
Sbjct: 617 LQSVLHATRDKAMIDLRHRTRIFVPDASCLLGIVDETGFLQPGQA------------SDS 664
Query: 605 RVLRAVDVPALHHMVDCVLFPAKGER-----PHTNECSGSDQDGEIYFVCWDHDRIPP-- 657
R+V+ H+ + +R P ++ SG D DG++Y V WD D +PP
Sbjct: 665 LGCRSVN----HYTANRASIMTNADRFGQCTPEPSKMSGGDLDGDLYSVVWDQDLLPPER 720
Query: 658 -------------LQFQPTAYTPAPEKIL------ARDVTIEDVEEYFADYIVNDSLGII 698
F Y P PEK + V ++++ ++F YI ND+LG I
Sbjct: 721 EGVAGVQGDSENGFNFPAMGYEP-PEKPKTSASSSGKGVDMKEIADFFLKYIQNDNLGKI 779
Query: 699 CNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDK 758
NAH+V A P A + C L L S DF K+GV A P L+V YPDFM K+D
Sbjct: 780 ANAHLVRADLSPLGARCDECLQLAALHSKAVDFPKSGVPAVFPDELKVDSYPDFMCKEDN 839
Query: 759 TWYESQHIVGNLYREV 774
Y S+ ++G L+R+
Sbjct: 840 MTYLSKKLIGRLFRDT 855
>gi|58269288|ref|XP_571800.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|58269290|ref|XP_571801.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|58269292|ref|XP_571802.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|57228036|gb|AAW44493.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|57228037|gb|AAW44494.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|57228038|gb|AAW44495.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 1120
Score = 194 bits (493), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 169/578 (29%), Positives = 270/578 (46%), Gaps = 77/578 (13%)
Query: 265 LIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQI 324
L+ + +LVTP+++ P+ SN V R Y D++D +R+ F DE+ +L+ I
Sbjct: 367 LVLIRTVLVTPTRLLIGPPQYEPSNSVTRRYHDKLDGIIRVQFTDEE-DRLFIADNMKLI 425
Query: 325 SSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIR 384
S N I RV L+ G++IG + F +A S SQ++E+ +W F + + ++R
Sbjct: 426 DSINPA--VGIMARVRRALQFGLIIGGETFYPVASSASQQKEHAMW-FINNKVIDGLELR 482
Query: 385 ERMGDFREIKNVTKYAARLGQSFASSREALHVDSNIGKISAEL---AETVAKKCGYA--- 438
MG E V K+AAR+G F++SR +++ NIG+ ++ CG A
Sbjct: 483 NWMGTVHETV-VAKHAARMGLPFSTSR-IVNMKINIGEELPDIERNGRCFTDGCGIAGRE 540
Query: 439 ---------------IYTPSAFQIRYGG--------------YKVTLRNNMFKYKSESTS 469
PSA Q R GG Y++ LR +M K+KS+
Sbjct: 541 VLNQAALALNEKVGINSQPSAIQFRLGGAKGVLSDWSQLVNEYEIRLRPSMIKFKSDLAD 600
Query: 470 LDILANSKYQR-------------EGVARLRLDNVFERKQREVVARLDAILTDSSKVQEA 516
L+++ +KYQ GV + +FE ++ D + ++ V E
Sbjct: 601 LNVIRIAKYQAAFLNRQFINIMCANGVPHELIIGIFEDAIADIKGFKDRVWNNA--VTEN 658
Query: 517 LELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMG 576
+ + + N L +L+ G+ + P L + L +L+ RAR+ + +G ++G
Sbjct: 659 DQQLIALCNDFPLAQLIKSGF--NENPLLLDVAAIIECRALQDLKWRARVKLLDGVYLIG 716
Query: 577 CLDEKGTLEYGQ-------------GLMVVAKKPCLHPG-DMRVLRAVDVPALHHMVDCV 622
DE GTL+ G+ ++V C P D+R AVD P L H+ + +
Sbjct: 717 IADETGTLKEGEVFCQFQENDESPPKIVVNEVLVCRAPACDVRRAWAVDNPELRHLKNVI 776
Query: 623 LFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ-FQPTAYTPAPEKILARDVTIED 681
+F +G R + G D DG+ Y + WD + L+ + P Y AP+ I + VT +
Sbjct: 777 VFSTQGMRDMPSMLGGGDLDGDDYTLIWDQRFVQSLKVYDPMDYE-APDPISVKHVTQKH 835
Query: 682 VEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIP 741
+ E F YI+ND LG + N H+ A S+ RC L ++ S DF+KTG AA +
Sbjct: 836 LNENFVQYILNDVLGQVDNCHL--ALSDMYTPFDPRCLHLSEIHSTAVDFAKTGQAAALD 893
Query: 742 SRLRVKIYPDFMEKQD-KTWYESQHIVGNLYREVNGIA 778
LR K +PDFM+K D K YES I+G ++R V A
Sbjct: 894 PSLRPKEWPDFMDKDDVKVVYESTGILGKIFRIVQADA 931
>gi|308476834|ref|XP_003100632.1| CRE-RRF-1 protein [Caenorhabditis remanei]
gi|308264650|gb|EFP08603.1| CRE-RRF-1 protein [Caenorhabditis remanei]
Length = 1680
Score = 193 bits (491), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 185/749 (24%), Positives = 307/749 (40%), Gaps = 168/749 (22%)
Query: 264 GLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQ 323
G V KI+ TP++V + PE + NRV+R + + +R++F D+ G+L +
Sbjct: 511 GFQRVRKIVFTPTRVIYIAPETIMGNRVLRRFDKDGTRVIRVTFRDDSNGRLRA------ 564
Query: 324 ISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWM-----FASRPEL 378
ST GE I + + G+ + ++ + L SNSQ R+N + F R L
Sbjct: 565 --STTGEEL--IDKTAMKFFSEGVKVANRDYGFLGCSNSQMRDNGAYFMEKSTFGQRQRL 620
Query: 379 --------------TAADIRERMGDFREIKNVTKYAARLGQSFASSR------------- 411
++R +G F I+NV K ARLGQ F SR
Sbjct: 621 LKNNPNANLIGFQPKILEVRRHLGRFETIENVPKMMARLGQCFTQSRLTGVELERSDYCT 680
Query: 412 --------------EALHVDSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK---- 453
+ +G +S A+ +A+ + I PS QIR+ G K
Sbjct: 681 TFDYEGAKTKPIVGKCYTYSDGVGIMSYGFAQRLARSMNFGISVPSCLQIRFRGMKGVIA 740
Query: 454 ----------------------------VTLRNNMFKYKSESTSLDILANSKYQREGVAR 485
R + K+ ++S D + K+ +
Sbjct: 741 IDPFYDEVSEWAQANGIQSYDVPNLDLKCQFRPSQIKFPAKSIPGDQIEMVKFSSPVLVA 800
Query: 486 LR------LDNVFERK----QREVVARLDAILTDSSKVQEALELMSSAENTNVLKELLN- 534
L LD V E + R V R++ ++ D V A ++ N LKE
Sbjct: 801 LNKPFINILDQVSEMQSIECHRRVTGRIEELM-DRQIVSFAKQMNDELYCRNKLKEFPRR 859
Query: 535 ---------CGYKPDAEPFL-SMMPQTFHASNLLELRT-RARIFIQNGQAMMGCLDEKGT 583
G+ EPF S++ + S +LR + +I + G++M+G +DE G
Sbjct: 860 IDIDFLKRMWGFTLCNEPFFRSLIKASIKFSITKQLRKEQIQIPKELGRSMLGIVDETGR 919
Query: 584 LEYGQ-------------------------------GLMVVAKKPCLHPGDMRVLRAVDV 612
L+YGQ G +++ K PC+ GD+R+ AVD+
Sbjct: 920 LQYGQIFVQYTRNSNEKLPPRSNMQHMKVQGSQVVTGTVLLTKNPCIVTGDVRIFEAVDI 979
Query: 613 PALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKI 672
P LHH+ D V+FP G RPH +E +GSD DG+ Y V WD + P +T +++
Sbjct: 980 PELHHLCDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQQLLLDKNEAPFDFTVEKKEM 1039
Query: 673 -LARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNR-CPDLVKLSSIVGD 730
R++ + + E++ Y+ DS+G I N H+ ++ +++R C DL K + D
Sbjct: 1040 PYDREMIDQLMHEFYVKYLKLDSVGTISNNHL---HNSDQYGLNSRVCMDLAKKNCQAVD 1096
Query: 731 FSKTG---------------VAATIPSRLRVKIYPDFMEKQDKT-WYESQHIVGNLYREV 774
F+K+G +P L ++ PD+ D Y + + G L+RE
Sbjct: 1097 FTKSGEPPAPLTKKWARDPETGEAVPPELAERV-PDYHVGNDNAPVYVTPRLCGRLFREF 1155
Query: 775 NGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGI 834
I I +E D +++ G++ + K Y+ +L ++M+ YGI
Sbjct: 1156 QAID-DVIRISEEREEQYEIEIDESIKMEGYENYLTCAE--KELANYNGQLRSIMETYGI 1212
Query: 835 KTEAEMLSRCIMEMAKSFDKKRDLEAISF 863
++E E++S CI+EM K D + +SF
Sbjct: 1213 QSEGEIMSGCILEMRNRISDK-DQDDMSF 1240
>gi|225554768|gb|EEH03063.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus G186AR]
Length = 1240
Score = 193 bits (491), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 172/623 (27%), Positives = 270/623 (43%), Gaps = 125/623 (20%)
Query: 266 IYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQIS 325
+ +++ +TP Y GP NRV+R Y +D+FLR+ FVDE + P+ S
Sbjct: 419 VSIHRAQITPCGTYLDGPHAETKNRVLRHYSSHVDHFLRVEFVDETGDPVR---YDPRAS 475
Query: 326 STNGERRTRIYE-RVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA----SRPELTA 380
I+E R + L++GI I +KFE L FS+S R T W A R A
Sbjct: 476 ID------MIFESRFKTVLKSGINIAGRKFEFLGFSHSSLRSQTCWFVAPFYKDRILYNA 529
Query: 381 ADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSNI----------GKISAELAET 430
I + +G F I++ K AAR+GQ+F+ + ++ + G++ ++ T
Sbjct: 530 TTIIQNLGRFDHIQSPAKQAARIGQTFSDTLTSIPISEKYISVGKDVERNGRVFSDGVGT 589
Query: 431 VAKKCGYAIYT---------PSAFQIRYGGYK-------------VTLRNNMFKYK---- 464
++ Y I+ P+ FQIR G K + LR +M K+
Sbjct: 590 ISPSVMYMIWKDHSLRTVVKPTVFQIRLAGAKGMISLDSRKKGKSLVLRPSMIKFHLPHS 649
Query: 465 ----------SESTSLDILANSKY----QREGVARLRLDNVFERKQREVVARLDAILTDS 510
S L N++ + GV D+VF R Q + ++RL A T +
Sbjct: 650 YNAFNIEICGSGLKPLPFFLNAQLIKILEDLGVD----DSVFLRLQADEISRLRATATST 705
Query: 511 SKVQEALELMSSAENTNVLKELLNC----GYKPDAEPFLSMMPQTFHASNLLELRTRARI 566
+K LE + A++ L L+N G + + FL + + L +L+ RARI
Sbjct: 706 AKAARFLEDTNIAKSVG-LPWLINILEGFGLRHSNDEFLRRVMELAVLIKLRDLKYRARI 764
Query: 567 FIQNGQAMMGCLDEKGTLEYGQGL-----------------MVVAKKPCLHPGDMRVLRA 609
+ N + G +DE G L+ G+ +VV + P +HPGD+++ RA
Sbjct: 765 RVPNAVTLFGIMDETGILKEGEVFCTSLSDKGVREVLVNPRVVVTRSPAMHPGDVQIARA 824
Query: 610 VDVPA---LHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYT 666
VDVPA L + +C+ F G R + SG D DG++Y V +D+ +P +P Y
Sbjct: 825 VDVPADSPLRQLHNCIAFSQHGHRDLPSMLSGGDLDGDLYNVIFDNTLLPKRIARPAEYP 884
Query: 667 PAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSS 726
EK+L R V ED+ ++F ++ D LG I H A P C L +L S
Sbjct: 885 RVQEKVLGRAVVREDIIDFFVTFMQQDQLGRIATIHQALADRRPLGTFDPECLLLAELHS 944
Query: 727 IVGDFSKTGVA---ATIPS-------------RLRVKIYPDFME---------------- 754
DFSKTGV A IP R+R+ +E
Sbjct: 945 TAVDFSKTGVPVDLARIPKFPSCRPDFQAPSPRIRIAENLSLLEGDMDAVQDGGDEDDDE 1004
Query: 755 KQDKTWYESQHIVGNLYREVNGI 777
+ +Y+S++I+G LYR ++ +
Sbjct: 1005 RPAVRFYKSENILGKLYRSIDEV 1027
>gi|315045169|ref|XP_003171960.1| RNA-dependent RNA polymerase 1 [Arthroderma gypseum CBS 118893]
gi|311344303|gb|EFR03506.1| RNA-dependent RNA polymerase 1 [Arthroderma gypseum CBS 118893]
Length = 1204
Score = 193 bits (490), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 166/616 (26%), Positives = 266/616 (43%), Gaps = 116/616 (18%)
Query: 266 IYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQIS 325
+ V++ +VTP +Y GP NR++R Y D ID F+R+ F+DE ++ P
Sbjct: 416 VLVHRAMVTPCGIYLSGPYTETKNRILRKYLDNIDYFIRVEFLDETGDPVF---FDP--- 469
Query: 326 STNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWM-----FASRPELTA 380
S N E + ++R ++ GI I + FE L FS+S R T W A+ L A
Sbjct: 470 SANLE--SIFHQRFAGVMKRGIEIAGRVFEYLGFSHSSLRSQTCWFAAPFTTANGDYLDA 527
Query: 381 ADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSNI-----------GKISAELAE 429
I +G F I++ +K AAR+GQ+F+ + ++ V + G++ ++
Sbjct: 528 KTIIGNIGHFDHIRSPSKQAARIGQAFSDTLTSISVSKEVVKMKAPDVKRNGRVFSDGVG 587
Query: 430 TVAKKCGYAIYT---------PSAFQIRYGGYK-------------VTLRNNMFK----- 462
++++ Y I+ P+ FQIR G K + LR +M K
Sbjct: 588 VISRELMYRIWNEYALRERVKPTVFQIRIAGAKGMVSLDTRKKGEFLMLRESMVKFPTDD 647
Query: 463 -YKSESTSLDILANSKYQREGVARLRLD-----NVFERKQREVVARLDAILTDSSKVQEA 516
Y E I A Y + ++ D F + Q++ ++ L + + +
Sbjct: 648 LYNIEICGAGIRALPFYLNNQIIKILEDLGVPFEAFHQLQQDEISFLYSTFSSIERAANF 707
Query: 517 LE---LMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQA 573
LE + S +L L + G + +PFL + + L +L+ RARI + N
Sbjct: 708 LEESPVPRSLRLPWLLLVLKSLGIRYSQDPFLQRVMELTMLLRLRDLKYRARIRVPNAVT 767
Query: 574 MMGCLDEKGTLEYGQGL-----------------MVVAKKPCLHPGDMRVLRAVDVPA-- 614
+ G +DE G L+ + +V+ + P LHPGD++V AVDVPA
Sbjct: 768 LYGIMDETGYLKENEIYCVYLAENGRREILVRDNVVITRSPALHPGDVQVANAVDVPANS 827
Query: 615 -LHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKIL 673
L + +CV F G R + SG D DG++Y + +D +P F P Y A K L
Sbjct: 828 PLRKLHNCVAFSQFGTRDLPSMLSGGDLDGDLYNIIYDTRLLPQKTFSPADYPRAEAKEL 887
Query: 674 ARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSK 733
R V ED+ ++F ++ D LG I H A + C L +L S D+SK
Sbjct: 888 DRKVETEDIIDFFVTFMQQDQLGRIAITHQAIADQSERGTLDGVCLTLARLHSTAVDYSK 947
Query: 734 TGVAA---TIPSRLRVKIYPDFM-----------------EKQDKT-------------- 759
+G+A +IP RV+ PDFM EK+
Sbjct: 948 SGIAVDVMSIPKAPRVR--PDFMAPSPRIRVEDSIESILREKESTVQDDDDDDNDRAKIR 1005
Query: 760 WYESQHIVGNLYREVN 775
+Y+S +I+G LYR ++
Sbjct: 1006 YYKSHNILGRLYRSID 1021
>gi|321261399|ref|XP_003195419.1| hypothetical protein CGB_G5150C [Cryptococcus gattii WM276]
gi|317461892|gb|ADV23632.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 1120
Score = 192 bits (489), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 165/578 (28%), Positives = 271/578 (46%), Gaps = 77/578 (13%)
Query: 265 LIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQI 324
L+ + +LVTP+++ P+ SN V R Y D++D +R+ F DE+ +L+ +
Sbjct: 367 LVLIRTVLVTPTRLLIGPPQYEPSNSVTRRYHDKLDGIIRVQFTDEE-DRLFIADYMKLV 425
Query: 325 SSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIR 384
S N I RV L+ G++IG + F +A S SQ++E+ +W F + + ++R
Sbjct: 426 DSINPA--VGIMARVRRALQFGLIIGGETFYPVASSASQQKEHAMW-FINNKIIDGLELR 482
Query: 385 ERMGDFREIKNVTKYAARLGQSFASSREALHVDSNIGKISAEL---AETVAKKCGYA--- 438
MG E V K+AAR+G F++SR +++ NIG+ ++ CG A
Sbjct: 483 NWMGTVHETV-VAKHAARMGLPFSTSR-IVNMKINIGEELPDIERNGRCFTDGCGIAGRE 540
Query: 439 ---------------IYTPSAFQIRYGG--------------YKVTLRNNMFKYKSESTS 469
PSA Q R GG Y++ LR +M K++S+
Sbjct: 541 VLNQAALALNEKFGINAQPSAIQFRLGGAKGVLSDWSQLVNEYEIRLRPSMIKFRSDLAD 600
Query: 470 LDILANSKYQR-------------EGVARLRLDNVFERKQREVVARLDAILTDSSKVQEA 516
L+++ +KYQ GV + +FE ++ D + ++ + E
Sbjct: 601 LNVIRIAKYQAAFLNRQFINIMCANGVPHELIIGIFEDAIADIKGFRDRVWNNA--ITEN 658
Query: 517 LELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMG 576
E + + N L +L+ G+ + P + + L +L+ RAR+ + +G ++G
Sbjct: 659 DEQLIALCNDFPLAQLIKSGFSEN--PLVLDVAAIIECRALQDLKWRARVKLSDGVYLIG 716
Query: 577 CLDEKGTLEYGQ-------------GLMVVAKKPCLHPG-DMRVLRAVDVPALHHMVDCV 622
DE GTL+ G+ ++V C P D+R AVD P L H+ + +
Sbjct: 717 IADETGTLKEGEIFCQFQENDESPPKVVVNEVLVCRAPACDVRRAWAVDRPELRHLKNVI 776
Query: 623 LFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ-FQPTAYTPAPEKILARDVTIED 681
+F +G R + G D DG+ Y + WD + L+ + P Y AP+ I + VT +
Sbjct: 777 VFSTQGMRDMPSMLGGGDLDGDDYTLIWDQRFVQSLKVYDPMDYE-APDPISVKHVTQKH 835
Query: 682 VEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIP 741
+ E F Y++ND LG + N H+ A S+ RC L ++ S DF+KTG AA +
Sbjct: 836 LNENFVQYVLNDVLGQVDNCHL--ALSDMYTPFDPRCLHLSEIHSTAVDFAKTGQAAALD 893
Query: 742 SRLRVKIYPDFMEKQD-KTWYESQHIVGNLYREVNGIA 778
LR K +PDFM+K D K YES+ I+G ++R V A
Sbjct: 894 PSLRPKEWPDFMDKDDVKVVYESKGILGKIFRIVQADA 931
>gi|358397216|gb|EHK46591.1| hypothetical protein TRIATDRAFT_317554 [Trichoderma atroviride IMI
206040]
Length = 1395
Score = 192 bits (488), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 167/624 (26%), Positives = 270/624 (43%), Gaps = 128/624 (20%)
Query: 267 YVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISS 326
++ K +VTP+++ GP+ NRV+R +P+ D F+R+ F DED ++
Sbjct: 555 WILKAMVTPTRITLHGPDAESMNRVLRMFPNHSDYFMRVIFGDED---------GQDLAL 605
Query: 327 TNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFAS----RPELTAAD 382
T+ + T ++ER L++GI + +KFE L FS+S R ++ W A+ L D
Sbjct: 606 TSNVKNTLVFERYRKILKDGIQVAGRKFEFLGFSHSSLRSHSAWFVAAFVDDSMNLQNND 665
Query: 383 -IRERMGDFREIKNVTKYAARLGQSFASSREALHV----------------------DSN 419
I + +GDF +I+ K AAR+GQ+F+ + A+ +
Sbjct: 666 TIIKSLGDFSDIRIAAKCAARIGQAFSETPYAVPILKCGINIEYIDDVKTADGKRVFSDG 725
Query: 420 IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYKVTL--------------RNNMFKYKS 465
+G IS + E V A + Q+R GG K L + +M K+ S
Sbjct: 726 VGTISWDAMEEVWDHLPKASSEATCVQVRLGGIKGMLSLDSRLNGKVICVRKESMMKFPS 785
Query: 466 -ESTSLDIL-ANSKYQREGVARLRLDNV---------FERKQREVVARLDAILTDSSKVQ 514
+ T + I SK R + R + + F +Q + + L + T ++
Sbjct: 786 KDQTEMGICDTASKPMRTYLNRQTIKILEDMGTNSEWFIDQQNKALNVLRNVTTTAANTS 845
Query: 515 EALE---LMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNG 571
L+ + ++A +++ L G E F+ + L L+ +ARI + G
Sbjct: 846 TFLKNQMVGTTAGLPRLIRYLSTIGIDYRRERFMKKVVDHTILRELRLLKHKARIPVDMG 905
Query: 572 QAMMGCLDEKGTLEYGQ----------------------GLMVVAKKPCLHPGDMRVLRA 609
+ G +DE G LE GQ G ++V + P LHPGD+++ R
Sbjct: 906 VTLFGVMDETGFLEEGQIYVTFNESHDHLQGRVKRSLKDGTVLVTRSPALHPGDIQLARM 965
Query: 610 VDVPALH---HMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYT 666
P H ++ +CV+F KG R ++ SG D DG++Y V WD IP F P Y
Sbjct: 966 TTPPQGHPLRNLKNCVVFSQKGSRDLPSQLSGGDLDGDLYNVFWDPFVIPKQYFGPADYP 1025
Query: 667 PAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSS 726
L R VT +D+ ++F ++ D LGII N H + A + + +S C DL ++ S
Sbjct: 1026 RVKPPELDRAVTRDDIADFFVKFMEADILGIIANRHQMLADYQDEGTLSADCVDLAEMHS 1085
Query: 727 IVGDFSKTGVAA-----TIPSRLRVKIYPDFM---------------------EKQD--- 757
D+SKTG+A P R+R PDF+ E +D
Sbjct: 1086 TAVDYSKTGIAVRHQDMPKPPRMR----PDFLAPAPPTRLFDRGEIDHIGDPNENEDDED 1141
Query: 758 ------KTWYESQHIVGNLYREVN 775
+Y+S I+G LYR V+
Sbjct: 1142 GMGMAKHKYYKSLKILGELYRGVD 1165
>gi|398389633|ref|XP_003848277.1| RNA-directed RNA polymerase [Zymoseptoria tritici IPO323]
gi|339468152|gb|EGP83253.1| RNA-directed RNA polymerase [Zymoseptoria tritici IPO323]
Length = 1234
Score = 192 bits (488), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 155/579 (26%), Positives = 261/579 (45%), Gaps = 92/579 (15%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
V+K++V P+ + GPE +NRV+R Y D FLR+ F DED ++
Sbjct: 423 VHKVVVMPTGLRLEGPEPEPTNRVLRRYAKYTDFFLRVEFRDEDG------------ATV 470
Query: 328 NGERRT---RIYE-RVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFAS---RPELTA 380
+ RT R+Y R + L + I+I + F L FS+S R + W A L
Sbjct: 471 RYDPRTDLHRVYHGRFKTVLDSSILISGRAFSFLGFSHSSLRSQSCWFMAPFVFNGSLRY 530
Query: 381 AD-IRERMGDFREIKNVTKYAARLGQSFASSREALHV------------------DSNIG 421
AD + + +G+F+ I+ K AAR+GQ+F + ++ + +G
Sbjct: 531 ADHVLQDLGEFKMIRTPAKCAARIGQNFTDTNTSVELRPEQVYWLNDVERNGRTFSDGVG 590
Query: 422 KISAELAETVAKKCGYA-IYTPSAFQIRYGGYK-------------VTLRNNMFKYKSES 467
IS EL ++V + G + P+ QIR+ G K + LR +M K+++E+
Sbjct: 591 IISMELLQSVWRVYGTRRLLKPTILQIRFQGCKGMVSLDTRLRGKCLALRKSMRKFQTET 650
Query: 468 T-SLDILANSKYQREGVARLRLDNVFE-------------RKQREVVARLDAILTDSSKV 513
T L+I + + + +FE +K + + R+ +++
Sbjct: 651 TWDLEICGAAFRPLPMILNRQFTKIFEDLGIPLSVFMDLQQKSVDKLRRMTHSAINTANF 710
Query: 514 QEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQA 573
+ E +A ++++ L G +PFL + + S L +++ R RI I +G
Sbjct: 711 LDETECTKAARVPSLIRYLGQMGLDYRHDPFLYNVVEMSVVSKLRDIKYRGRIPIDDGVT 770
Query: 574 MMGCLDEKGTLEY-------------GQGLMV-----VAKKPCLHPGDMRVLRAVDVP-- 613
+ G +DE G L+ G+ ++V V + P +HPGD++++ AVDVP
Sbjct: 771 LYGIMDETGVLKANEIFVVTEKAPLGGRSVLVRNNVIVTRSPAMHPGDVQIVNAVDVPQG 830
Query: 614 -ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKI 672
L + + V+F G+R + SG D DG+IY V W +P + + Y P +
Sbjct: 831 SPLRQLSNVVVFSQHGDRDLPSMLSGGDLDGDIYNVIWLPQLVPEVTYDAADYPKVPTEE 890
Query: 673 LARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFS 732
L RDV +D+ ++F ++ +D LG+IC AH+ A + C L ++S DFS
Sbjct: 891 LDRDVNRKDMSDFFVKFMESDQLGMICTAHLQIADQRERGVLDPDCIKLSAMASTAVDFS 950
Query: 733 KTGVA---ATIPSRLRVKIYPDFMEKQDKTWYESQHIVG 768
KTG+ A +P R K PDFM + Q +
Sbjct: 951 KTGIPVNLAQMPRYDRCK--PDFMAPSPRVIVSEQGYIA 987
>gi|449550827|gb|EMD41791.1| hypothetical protein CERSUDRAFT_147107 [Ceriporiopsis subvermispora
B]
Length = 1211
Score = 192 bits (487), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 168/612 (27%), Positives = 284/612 (46%), Gaps = 107/612 (17%)
Query: 270 KILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNG 329
+++VTP+ GP NRV+R++ D D+FLR++FVDE+ + ++ +
Sbjct: 424 RLIVTPTTWSLEGPFPERFNRVIRTHRDNCDSFLRVAFVDENRLQYR---FDREVDGSEF 480
Query: 330 ERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMF-----ASRPELTAADIR 384
RR RV L NGI I + FE LA+S S RE+ +W AS + A I
Sbjct: 481 IRR-----RVKGLLINGITIAGRHFEFLAYSQSALREHAVWFVKSFTDASGACVDAPGII 535
Query: 385 ERMGDF------REIKNVTKYAARLGQSFASSREALHV------------DSN------- 419
+G+F + I ++AAR+ Q+F ++ ++ V DSN
Sbjct: 536 RTLGNFHVNYDPQLIYCPARWAARVSQAFTATDASVSVEAEEIIILDDIEDSNRRLFTDG 595
Query: 420 IGKISAELAETVAKK-CGYAIYT------PSAFQIRYGGYK-------------VTLRNN 459
+G ISAELA+ + K+ C P AFQIR+GG K + LR +
Sbjct: 596 VGTISAELAKAIWKELCARRHRNRRRPAYPRAFQIRFGGSKGMLSVDYTLEGRIICLRRS 655
Query: 460 MFKYKSESTSLDILANSKYQREGVARLRLD------------NVFERKQREVVARLD--- 504
M K+++ + + +A + + R G L +VF++ Q + V ++
Sbjct: 656 MIKFEAPHSMVVEVARA-FDRPGKYYLNRPLIMLLEGLGVPYDVFQKLQDDAVQHVEESR 714
Query: 505 AILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLL-ELRTR 563
L ++++ E L SS T+V+ L G +P + F +++L EL+
Sbjct: 715 GSLETAARLLETHGLGSSFRLTSVMLALHKLGVEPFMQDVFWRQMMDFAVNHVLRELKHH 774
Query: 564 ARIFIQNGQAMMGCLDEKGTLEYGQ-----------------GLMVVAKKPCLHPGDMRV 606
ARI + +G ++G D G LE GQ G ++++ P +HPGD++V
Sbjct: 775 ARIPVPDGWTLVGVADVHGFLEEGQIFACIIPTDGAAPIYLEGPTLISRSPTIHPGDVQV 834
Query: 607 LRAVDVP------ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQF 660
+ A+ P A + + V+F KG RP + G D DG++Y + + P +
Sbjct: 835 VHAIGKPPPNSPFAKESLRNTVVFSIKGSRPLPSCLGGGDLDGDVYNLTTMPELRPRRTY 894
Query: 661 QPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPD 720
+P +Y A +K+L R T+ DV ++ A+YI++D+LGII ++ A + C
Sbjct: 895 EPASYAAAEKKLLIRPCTMADVADFVAEYIISDTLGIIAINWLIIADQSVEGIRDPACLL 954
Query: 721 LVKLSSIVGDFSKTGVAATIPS--RLRVKIYPDF-----MEKQDKTWYESQHIVGNLYRE 773
L L S D+ K+G + + RL+ + PD+ ++ +YESQ +G L+R
Sbjct: 955 LAALHSDAVDYPKSGRPVPVENIPRLKFRAKPDWNAPETLKGDAVEFYESQRAIGKLFRS 1014
Query: 774 VNGIAPSTTTIK 785
+N P+ T++
Sbjct: 1015 IN--LPALGTLR 1024
>gi|453080014|gb|EMF08066.1| RdRP-domain-containing protein, partial [Mycosphaerella populorum
SO2202]
Length = 446
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 137/435 (31%), Positives = 207/435 (47%), Gaps = 98/435 (22%)
Query: 335 IYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIK 394
++ RV + GI +G + +E LAF N+Q R++ + FAS +TAADIR+ MGDF I+
Sbjct: 11 VFSRVKRAMAQGINVGGRHYEFLAFGNAQFRDHGAYFFASTTGVTAADIRDWMGDFTSIR 70
Query: 395 NVTKYAARLGQSFASSREALH---------VDSN-------IGKISAELAETVAKKCGYA 438
+ KY +RLGQ F+++R H V+ N +GKIS LA +A G A
Sbjct: 71 IIAKYVSRLGQCFSTTRAIPHAVNVEKIDDVERNGFCFTDGVGKISPFLARMIAHHYGMA 130
Query: 439 IYT---PSAFQIRYG-------------GYKVTLRNNMFKYKSESTSLDILANSKYQREG 482
PS FQIR G K+ +R + K+ ++S L+I S++
Sbjct: 131 NSEQDYPSVFQIRLAGCKGVLAVDPRLKGMKIQIRPSQQKFPAKSNGLEICRISQFSTAS 190
Query: 483 V-ARLRL--------DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELL 533
+ +L L D VF K R +++ L L DS Q+ALEL+ + N + L
Sbjct: 191 LNVQLILVLSALGVPDEVFLNKLRNMLSDLQEAL-DSE--QKALELLQKNVDFNQMTISL 247
Query: 534 NC----GYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL----- 584
C G+ +PF+ + + + NL L+ +ARIFI G ++GC DE TL
Sbjct: 248 ACMIFDGFMATKDPFVMTCLRLWRSWNLKYLKEKARIFIDQGAFLLGCTDESATLRGHFK 307
Query: 585 -------------------------------------------EYGQGLMVVAKKPCLHP 601
+ G++V+A+ P LHP
Sbjct: 308 SVADPNGILKDQQSTEADVDKHDESALPEIFLQIPDAEKPGSYKVVTGIVVLARNPSLHP 367
Query: 602 GDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPP-LQF 660
GD+RV++AVD AL H+ +CV+ P G+R N CSG D DG+ + V WD + IPP
Sbjct: 368 GDIRVVKAVDNAALRHLKNCVVLPQTGDRDVANMCSGGDLDGDDFIVMWDKELIPPEWNH 427
Query: 661 QPTAYTPAPEKILAR 675
+P YT +P+ ++A+
Sbjct: 428 EPMDYT-SPDPVMAK 441
>gi|347830482|emb|CCD46179.1| similar to rna-dependent rna polymerase [Botryotinia fuckeliana]
Length = 1203
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 159/572 (27%), Positives = 270/572 (47%), Gaps = 107/572 (18%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKL-YSTVLSPQISS 326
++++ +TP+ Y GPE +NR++R Y NF+R++F DED +L Y++ ++
Sbjct: 421 IHRVTITPAGFYLDGPEPESNNRILRKYAGNHSNFVRVTFCDEDGDRLQYAS------NA 474
Query: 327 TNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE----LTAAD 382
+N E ++ +VL ++G IG +K+E L S+S R + W A + A
Sbjct: 475 SNDEIYDGVFRKVL---QDGFSIGKQKYEYLGSSHSSLRTQSCWFVAPFTQNDIYYDALH 531
Query: 383 IRERMGDFREIKNVTKYAARLGQSFASSREALHVDSNI-----------GKISAELAETV 431
I + +G F +I++ K AAR+GQ+F+ + L +D + G++ ++ T+
Sbjct: 532 ITQDLGRFGDIRSPAKCAARIGQAFSDTPNTLTLDETVTVETVADIERNGRVFSDGVGTM 591
Query: 432 AKKCGYAIY---------TPSAFQIRY-------------GGYKVTLRNNMFKYK-SEST 468
++K I+ P+ FQIRY G K+ LR +M K++ S S
Sbjct: 592 SEKLMEKIWDRLPDKYLVKPTCFQIRYRGAKGMISLDSRLPGVKLRLRESMIKFEGSTSN 651
Query: 469 SLDILANS-----KYQREGVARLRLD-----NVFERKQREVVARLDAI---------LTD 509
L+I + Y ++ D F R Q + V+RL I
Sbjct: 652 DLEICGGAYKPLPMYLNRQFIKILEDLGVEPEYFMRLQAKEVSRLREITASAYNASTFLQ 711
Query: 510 SSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRT---RARI 566
S +V + + L E+ + L + ++ D + + L+ELRT +ARI
Sbjct: 712 SKRVGDVVLLPQLIEHCSAL----DLDFRNDL-----FLRDILEMTVLIELRTLKHKARI 762
Query: 567 FIQNGQAMMGCLDEKGTLEYGQ----------------GLMVVAKKPCLHPGDMRVLRAV 610
++ G + G +DE G LE G+ +V+ + P LHPGD+++ AV
Sbjct: 763 PVERGYHLHGIMDETGILEEGEIYCCWIEDGKRTTLVGSNVVITRAPALHPGDIQLANAV 822
Query: 611 DVPA---LHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTP 667
+VP+ L+ + +CV F KG R ++ SG D DG++Y+V +D D +P Y+
Sbjct: 823 NVPSDSPLNRLYNCVCFSQKGARDLPSQLSGGDLDGDLYYVIFDEDMKLKRTVKPADYSR 882
Query: 668 APEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSI 727
+ + R V ED+ ++F ++ D LG+I N H VYA + M C D +KL+ +
Sbjct: 883 SLPLDIGRPVKQEDMADFFLTFMKTDQLGVISNRHQVYADQD---VMGTECSDCLKLAEL 939
Query: 728 VG---DFSKTGVAATI--PSRLRVKIY-PDFM 753
D+SKTG+ + PS R ++ PDFM
Sbjct: 940 CSTAVDYSKTGIPPKLNDPSVPRHSLWRPDFM 971
>gi|290989465|ref|XP_002677358.1| predicted protein [Naegleria gruberi]
gi|284090965|gb|EFC44614.1| predicted protein [Naegleria gruberi]
Length = 913
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 159/638 (24%), Positives = 275/638 (43%), Gaps = 131/638 (20%)
Query: 244 YRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFL 303
++KH Q + V +D + + K+++TP+ + + + NRV+R Y D FL
Sbjct: 287 FKKHSHKRQHKS--FVKVDDNMFEIRKVMITPTGIKYFPKILESGNRVLRKYKQYEDRFL 344
Query: 304 RLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQ 363
R++F DE L ++ + E+ T ++ R+ L NG IG++ +E LA+SNSQ
Sbjct: 345 RVTFCDEGLNRV------------SAEKVTNMHPRLEEFLNNGFTIGNRHYEMLAYSNSQ 392
Query: 364 ERENTLWMFASRP--ELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALH------ 415
R ++ W + EL+ + I E +GDF +IK + KYAAR+GQ F+++ +
Sbjct: 393 LRSHSCWFLNTEGIRELSVSSIIEGLGDFSDIKVMAKYAARIGQCFSNTFNGIKSEFIEV 452
Query: 416 ------------------VDSNIGKISAELAETVAKKCGYAI----YTPSAFQIRYGGYK 453
++ G++S AE V+K+ I Y PSA Q R GGYK
Sbjct: 453 NDIVYREIERNGDIKENVLNDGCGRMSVSFAEQVSKQMKIRIHGKAYIPSALQFRLGGYK 512
Query: 454 ----------------VTLRNNMFKYKSE-STSLDILANSK------YQREGVARLRLDN 490
+ L + K+K E S +++A SK R+ + L +
Sbjct: 513 GVVVQDKDVADIFGKDLVLTKSQNKFKDEKSDEFEMVAFSKRPKFSSLNRQIIILLSSNG 572
Query: 491 VFERKQREVVARLDAILTDSSKVQEALEL------------------MSSAENTNVLKEL 532
+ + + V R I T S+ + L + + S+E ++ ++
Sbjct: 573 LPDSALMKFVDR--EIETWRSRTTKKLSIRKLLRKVWENVVGSNIKKVISSEYLDLKAQV 630
Query: 533 L----------NCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKG 582
L + Y + +P L + + L+T + + +MG +D G
Sbjct: 631 LASQVKGMSQQHVEYFYNVDPLLCTLCDKILINQFSSLKT--NLPVDKCSLLMGVVDFYG 688
Query: 583 TLE-----------------------YGQGLMV-----VAKKPCLHPGDMRVLRAVD--- 611
LE Y +G +V V + PCLHPGD+R +AV
Sbjct: 689 VLEDDEVFVQLSSFESYERDLYDPGSYAEGGIVSGNVFVTRNPCLHPGDVRKFKAVSDDR 748
Query: 612 VPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEK 671
+ L H+ D ++F K ++ ++ SG D DG+++ VCWD + + + +P +T
Sbjct: 749 INVLKHLKDVIVFSQKSKQSQASKMSGGDLDGDLFMVCWDPELLNFTEHKPMKHTQLKPL 808
Query: 672 ILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDF 731
+ + ++ +Y+VND+LG++ H+ + A+ C DL S D+
Sbjct: 809 EKNDGFDYKAIRDFLKEYVVNDNLGVVAFMHMEHYDQSSKGALDQNCLDLADYHSHQVDY 868
Query: 732 SKTGVAATIPSRLRVKIYPDFMEKQ-DKTWYESQHIVG 768
+KTGV +P L + P +M K K Y S I+G
Sbjct: 869 AKTGVRKALPMELVSEYRPHYMPKSFMKKTYHSTKIIG 906
>gi|154290300|ref|XP_001545747.1| hypothetical protein BC1G_15659 [Botryotinia fuckeliana B05.10]
Length = 1080
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 159/572 (27%), Positives = 270/572 (47%), Gaps = 107/572 (18%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKL-YSTVLSPQISS 326
++++ +TP+ Y GPE +NR++R Y NF+R++F DED +L Y++ ++
Sbjct: 288 IHRVTITPAGFYLDGPEPESNNRILRKYAGNHSNFVRVTFCDEDGDRLQYAS------NA 341
Query: 327 TNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE----LTAAD 382
+N E ++ +VL ++G IG +K+E L S+S R + W A + A
Sbjct: 342 SNDEIYDGVFRKVL---QDGFSIGKQKYEYLGSSHSSLRTQSCWFVAPFTQNDIYYDALH 398
Query: 383 IRERMGDFREIKNVTKYAARLGQSFASSREALHVDSNI-----------GKISAELAETV 431
I + +G F +I++ K AAR+GQ+F+ + L +D + G++ ++ T+
Sbjct: 399 ITQDLGRFGDIRSPAKCAARIGQAFSDTPNTLTLDETVTVETVADIERNGRVFSDGVGTM 458
Query: 432 AKKCGYAIY---------TPSAFQIRYGGYK-------------VTLRNNMFKYK-SEST 468
++K I+ P+ FQIRY G K + LR +M K++ S S
Sbjct: 459 SEKLMEKIWDRLPDKYLVKPTCFQIRYRGAKGMISLDSRLPGVQLRLRESMIKFEGSTSN 518
Query: 469 SLDILANS-----KYQREGVARLRLD-----NVFERKQREVVARLDAI---------LTD 509
L+I + Y ++ D F R Q + V+RL I
Sbjct: 519 DLEICGGAYKPLPMYLNRQFIKILEDLGVEPEYFMRLQAKEVSRLREITASAYNASTFLQ 578
Query: 510 SSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRT---RARI 566
S +V + + L E+ + L + ++ D + + L+ELRT +ARI
Sbjct: 579 SKRVGDVVLLPQLIEHCSAL----DLDFRNDL-----FLRDILEMTVLIELRTLKHKARI 629
Query: 567 FIQNGQAMMGCLDEKGTLEYGQ----------------GLMVVAKKPCLHPGDMRVLRAV 610
++ G + G +DE G LE G+ +V+ + P LHPGD+++ AV
Sbjct: 630 PVERGYHLHGIMDETGILEEGEIYCCWIEDGKRTTLVGSNVVITRAPALHPGDIQLANAV 689
Query: 611 DVPA---LHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTP 667
+VP+ L+ + +CV F KG R ++ SG D DG++Y+V +D D +P Y+
Sbjct: 690 NVPSDSPLNRLYNCVCFSQKGARDLPSQLSGGDLDGDLYYVIFDEDMKLKRTVKPADYSR 749
Query: 668 APEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSI 727
+ + R V ED+ ++F ++ D LG+I N H VYA + M C D +KL+ +
Sbjct: 750 SLPLDIGRPVKQEDMADFFLTFMKTDQLGVISNRHQVYADQD---VMGTECSDCLKLAEL 806
Query: 728 VG---DFSKTGVAATI--PSRLRVKIY-PDFM 753
D+SKTG+ + PS R ++ PDFM
Sbjct: 807 CSTAVDYSKTGIPPKLNDPSVPRHSLWRPDFM 838
>gi|308474534|ref|XP_003099488.1| hypothetical protein CRE_01169 [Caenorhabditis remanei]
gi|308266677|gb|EFP10630.1| hypothetical protein CRE_01169 [Caenorhabditis remanei]
Length = 1637
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 194/751 (25%), Positives = 303/751 (40%), Gaps = 173/751 (23%)
Query: 264 GLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQ 323
G V KI+ TP++V + PE + NRV+R Y + LR+ F D+D K+ + S
Sbjct: 487 GYQRVRKIIFTPTRVVYVAPETLMGNRVLRRYDRDGCRVLRIMFRDDDNQKMRTNKTSTL 546
Query: 324 ISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFAS--------- 374
+ +T V LR+GI + K F L SNSQ R++ +
Sbjct: 547 LETT-----------VHRYLRDGITVAGKNFGYLGSSNSQMRDSGAYFMEKYSSAQCREY 595
Query: 375 ------------RPELTAADIRERMGDFREIKNVTKYAARLGQSFASSR----------- 411
P++ +A R+ +G F I N+ K ARLGQ F SR
Sbjct: 596 EEKYKLKPPIDFNPKIQSA--RKNLGRFETIDNIPKMMARLGQCFTQSRLSGVNLERCTY 653
Query: 412 --------------EALHVDSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK---- 453
+ +G +S A+ V++ PS FQ R+ G K
Sbjct: 654 ITTFDLTGGKNVKRDEYTFSDGVGLMSHLFAKMVSEVMDLGKGVPSCFQFRFRGMKGVIA 713
Query: 454 -----------------------------VTLRNNMFKYKSESTSLDILANSKYQREGVA 484
R + K+ S+ D + KY
Sbjct: 714 VEPLLDNIRLWCVENNVPEVSEETSWGLSCVFRPSQIKFISKRHPRDQVEIVKYSAPVPV 773
Query: 485 RLR------LDNVFERK----QREVVARLDAILTDSSKVQEALELMSSAENTNVLKEL-- 532
L LD V E + R V R++ +L D +Q A +++ N LKEL
Sbjct: 774 SLNKPFINILDQVSEMQSLECHRRVTNRIEELL-DRQMLQFAQQMVDETFCRNRLKELPR 832
Query: 533 --------LNCGYKPDAEPFL-SMMPQTFHASNLLELRT-RARIFIQNGQAMMGCLDEKG 582
G+ +EPF S++ + +LR + I G++M+G +DE G
Sbjct: 833 RVDIDYLRTTWGFTLSSEPFFRSLIKASIKFLITRQLRKEQIPIPADLGRSMLGVVDETG 892
Query: 583 TLEYGQ------------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHM 618
L+YGQ G +++ K PC+ GD+R+ AVD+P LHHM
Sbjct: 893 RLQYGQIFVQLTKNLALKIPPKTAARQVLTGTVLLTKNPCIVAGDVRIYEAVDIPELHHM 952
Query: 619 VDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVT 678
D V+FP G RPH +E +GSD DG+ Y + WD + P +T +K ++
Sbjct: 953 NDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLLLDKNEDPFDFTSEKQKSSFKEEE 1012
Query: 679 IEDV-EEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNR-CPDLVKLSSIVGDFSKTGV 736
I+ + +++ Y+ DS+G I N+H+ ++ +++R C DL K + DF+K+G+
Sbjct: 1013 IDGLMRDFYVTYLKLDSVGTISNSHL---HNSDQYGLNSRVCMDLAKKNCQAVDFTKSGI 1069
Query: 737 ---------------AATIPSRLRVKIYPDFMEKQDKT-WYESQHIVGNLYREVNGIAPS 780
IP R + PD+ D + Y S + G L+RE I
Sbjct: 1070 PPEELEKKWRKDDETGEMIPPE-RAERVPDYHMGNDHSPMYVSPRLCGKLFREFKAID-D 1127
Query: 781 TTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIK----- 835
I E D M ++G+ E MQ + Y+ +L ++M+ YGIK
Sbjct: 1128 VVKISEERDEQIEISIDPTMTIDGYDEY-MQ-SAREDLARYNAQLRSVMENYGIKKINDR 1185
Query: 836 ---TEAEMLSRCIMEMAKSFDKKRDLEAISF 863
TE E+ S CI++M K D + +SF
Sbjct: 1186 YFQTEGEIFSGCIVDMRNRISDK-DQDDMSF 1215
>gi|400595821|gb|EJP63611.1| RNA dependent RNA polymerase [Beauveria bassiana ARSEF 2860]
Length = 1328
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 167/624 (26%), Positives = 265/624 (42%), Gaps = 127/624 (20%)
Query: 267 YVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISS 326
+V K +VTP++V GP+ NRV+R + D D FLR++F DED L + ++S+
Sbjct: 480 WVLKAMVTPTRVILGGPDPESKNRVLRMFHDRTDYFLRVTFTDEDGSDLN---FNHRVSN 536
Query: 327 TNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFAS-----RPELTAA 381
+Y+ S ++ GI + ++F L FS+S R ++ W A A
Sbjct: 537 DY------VYDHYRSVMKQGIEVAGRRFSFLGFSHSSLRSHSAWFMAPFVDNRMGRQDYA 590
Query: 382 DIRERMGDFREIKNVTKYAARLGQSFASSREAL-----------------HVDSN----- 419
+ +GDFREI+ K AAR+GQ+F+ + A+ +VD +
Sbjct: 591 TVLNSLGDFREIRIPAKCAARIGQAFSETPYAVSLRGSSIVISYIEDVRSYVDESRVFSD 650
Query: 420 -IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYKVTLRNNMFKYKSESTSLDILANSKY 478
+G IS E + +P+ QIR G K L + + + + + K+
Sbjct: 651 GVGTISQGALEEFWDVLPLNLGSPTCVQIRVAGIKGMLSLDP-RLLGKQICIRAESMMKF 709
Query: 479 QREGVARLRLDNVFERKQREVVAR-LDAILTD-----------SSKVQEALE-LMSSAEN 525
+ + V R R V+ R + IL D +K E L + ++A N
Sbjct: 710 PSRDFVEIGICEVAARPLRLVLNRQMIKILEDMGTNRTWFRAMQAKALETLRGVTATAAN 769
Query: 526 TNVLKELLNCG------------------YKPDAEPFLSMMPQTFHASNLLELRTRARIF 567
T E G Y+ D PFL + + L L+ +ARI
Sbjct: 770 TCTFLEYQGVGSSIRLPRFIRRMHAHGIDYRGD--PFLKGVVEYVVLRELRLLKHKARIP 827
Query: 568 IQNGQAMMGCLDEKGTLEYGQ----------------------GLMVVAKKPCLHPGDMR 605
I+ G + G +DE G L+ G+ G +VV + P LHPGD++
Sbjct: 828 IEKGVTLFGVMDETGFLKEGEIYIHYDRRAPGRKDGIEDSLVDGPVVVTRSPALHPGDIQ 887
Query: 606 VLRAVDVPALH---HMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQP 662
+ + V P H + +C++F +G R ++ SG D DG+ Y V WD +P F P
Sbjct: 888 LAKMVTPPEKHPLRALRNCIVFSQRGGRDLPSQLSGGDLDGDKYNVIWDGGALPRSVFAP 947
Query: 663 TAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLV 722
+Y + L RDVT +D+ +F +++ D LG+I N H++YA +P A C L
Sbjct: 948 ASYPRNKPQPLDRDVTRDDIASFFIEFMRTDVLGLIANRHLMYADIQPAGADDPTCIKLA 1007
Query: 723 KLSSIVGDFSKTGVAATIPSRLR-VKIYPDFMEKQDKT---------------------- 759
+L S D+SKTG+ I R K PDFM T
Sbjct: 1008 ELHSTAVDYSKTGIPPLINEIPRQPKTKPDFMAPAPPTTTYDLGDVAFVEVDEEEDEGDD 1067
Query: 760 --------WYESQHIVGNLYREVN 775
+++S+ I+G LYR ++
Sbjct: 1068 GFGRPKYRYHKSEKILGQLYRAID 1091
>gi|239613137|gb|EEQ90124.1| RNA-dependent RNA polymerase [Ajellomyces dermatitidis ER-3]
Length = 1154
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 162/619 (26%), Positives = 271/619 (43%), Gaps = 116/619 (18%)
Query: 266 IYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQIS 325
+ ++++ VTP +Y GP + NRV+R Y + +D+FLR+ F+DE P
Sbjct: 334 VSIHRVQVTPCGIYLDGPYMESKNRVLRRYANHVDHFLRVEFMDESG--------DPVRY 385
Query: 326 STNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWM----FASRPELTAA 381
+R L+NGI I +KFE L FS+S R T W +A A
Sbjct: 386 DPRASIDLIFQQRFKGVLKNGINIAGRKFEFLGFSHSSLRSQTCWFVAPFYADGILYNAT 445
Query: 382 DIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSNI----------GKISAELAETV 431
I + +G F I + K AAR+GQ+F+ + ++ + I ++ ++ T+
Sbjct: 446 TIIQNLGRFDHINSPAKQAARIGQTFSETLTSIPISEEIISVVQDVRRNDRVFSDGVGTI 505
Query: 432 AKKCGYAIYT---------PSAFQIRYGGYK-------------VTLRNNMFKYKSEST- 468
+ Y I+ P+ FQIR G K + LR +M K+ ++
Sbjct: 506 SPSVMYMIWKDYSLRTMVKPTVFQIRIAGAKGMVSLDSRNKGESLVLRPSMIKFPVTTSF 565
Query: 469 -------------SLDILANSKYQREGVARLRLD-NVFERKQREVVARLDAILTDSSKVQ 514
SL N++ + + L +D NVF + QR+ + RL A T +++
Sbjct: 566 NAYNIEICGSGIRSLPFFLNAQLIKI-LEDLGVDGNVFLKLQRDEILRLRATATSTTQAA 624
Query: 515 EALELMSSAENTNV---LKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNG 571
+ LE + A++ + + L G + + FL + + L +L+ RARI +
Sbjct: 625 KFLEDTNIAKSVGLPWLISILEALGLRHSDDEFLRRVMELVVLIKLRDLKYRARIRVPKA 684
Query: 572 QAMMGCLDEKGTLEYGQGL-----------------MVVAKKPCLHPGDMRVLRAVDVPA 614
+ G +DE G L+ G+ +VV + P +HPGD+++ +AVDVPA
Sbjct: 685 VTLFGIMDETGYLKEGEIFCTSLSDKGRREVLLNPKVVVTRSPAMHPGDVQIAKAVDVPA 744
Query: 615 ---LHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEK 671
L + +C+ F G+R + SG D DG++Y V ++ IP + P Y EK
Sbjct: 745 DSPLRQLHNCIAFSQHGDRDLPSMLSGGDLDGDLYNVIFEDTLIPRVISPPAQYPRVQEK 804
Query: 672 ILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDF 731
+L R V +D+ ++F ++ D LG I H A + +C L +L S DF
Sbjct: 805 VLDRPVVRDDIIDFFVTFMQQDQLGRIATVHQTIADQKALGTFDPQCLLLAELHSTAVDF 864
Query: 732 SKTGVA---ATIPS-------------RLRVKIYPDFMEKQDKT---------------- 759
SK+GV A IP R+R+ +E+ D+
Sbjct: 865 SKSGVPVDLARIPKFPRYRPDFQAPGPRVRIAESLSLLEEHDQMTVLDDDDEEEDERPTA 924
Query: 760 -WYESQHIVGNLYREVNGI 777
+Y+S+ I+G LYR ++ +
Sbjct: 925 RYYKSEKILGKLYRAIDEV 943
>gi|261191013|ref|XP_002621915.1| RNA dependent RNA polymerase [Ajellomyces dermatitidis SLH14081]
gi|239590959|gb|EEQ73540.1| RNA dependent RNA polymerase [Ajellomyces dermatitidis SLH14081]
Length = 1239
Score = 190 bits (482), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 162/619 (26%), Positives = 269/619 (43%), Gaps = 116/619 (18%)
Query: 266 IYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQIS 325
+ ++++ VTP +Y GP + NRV+R Y + +D+FLR+ F+DE P
Sbjct: 419 VSIHRVQVTPCGIYLDGPYMESKNRVLRRYANHVDHFLRVEFMDESG--------DPVRY 470
Query: 326 STNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWM----FASRPELTAA 381
+R L+NGI I +KFE L FS+S R T W +A A
Sbjct: 471 DPRASIDLIFQQRFKGVLKNGINIAGRKFEFLGFSHSSLRSQTCWFVAPFYADGILYNAT 530
Query: 382 DIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSNIGKISAELAE----------TV 431
I + +G F I + K AAR+GQ+F+ + ++ + I + ++ T+
Sbjct: 531 TIIQNLGRFDHINSPAKQAARIGQTFSETLTSIPISEEIISVVQDVKRNDRVFSDGVGTI 590
Query: 432 AKKCGYAIYT---------PSAFQIRYGGYK-------------VTLRNNMFKYKSEST- 468
+ Y I+ P+ FQIR G K + LR +M K+ ++
Sbjct: 591 SPSVMYMIWKDYSLRTMVKPTVFQIRIAGAKGMVSLDSRNKGESLVLRPSMIKFPVTTSF 650
Query: 469 -------------SLDILANSKYQREGVARLRLD-NVFERKQREVVARLDAILTDSSKVQ 514
SL N++ + + L +D NVF + QR+ + RL A T +++
Sbjct: 651 NAYNIEICGSGIRSLPFFLNAQLIKI-LEDLGVDGNVFLKLQRDEILRLRATATSTTQAA 709
Query: 515 EALELMSSAENTNV---LKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNG 571
+ LE + A++ + + L G + + FL + + L +L+ RARI +
Sbjct: 710 KFLEDTNIAKSVGLPWLISILEALGLRHSDDEFLRRVMELVVLIKLRDLKYRARIRVPKA 769
Query: 572 QAMMGCLDEKGTLEYGQGL-----------------MVVAKKPCLHPGDMRVLRAVDVPA 614
+ G +DE G L+ G+ +VV + P +HPGD+++ +AVDVPA
Sbjct: 770 VTLFGIMDETGYLKEGEIFCTSLSDKGRREVLLNPKVVVTRSPAMHPGDVQIAKAVDVPA 829
Query: 615 ---LHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEK 671
L + +C+ F G+R + SG D DG++Y V + IP + P Y EK
Sbjct: 830 DSPLRQLHNCIAFSQHGDRDLPSMLSGGDLDGDLYNVIFKDTLIPRVISPPAQYPRVQEK 889
Query: 672 ILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDF 731
+L R V +D+ ++F ++ D LG I H A + +C L +L S DF
Sbjct: 890 VLDRPVVRDDIIDFFVTFMQQDQLGRIATVHQTIADQKALGTFDPQCLLLAELHSTAVDF 949
Query: 732 SKTGVA---ATIPS-------------RLRVKIYPDFMEKQDKT---------------- 759
SK+GV A IP R+R+ +E+ D+
Sbjct: 950 SKSGVPVDLARIPKFPRYRPDFQAPGPRVRIAESLSLLEEHDQMTVLDDEEEEEDERPTA 1009
Query: 760 -WYESQHIVGNLYREVNGI 777
+Y+S+ I+G LYR ++ +
Sbjct: 1010 RYYKSEKILGKLYRAIDEV 1028
>gi|400598650|gb|EJP66359.1| RNA dependent RNA polymerase [Beauveria bassiana ARSEF 2860]
Length = 1260
Score = 189 bits (481), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 164/627 (26%), Positives = 271/627 (43%), Gaps = 136/627 (21%)
Query: 267 YVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISS 326
+V K +V P++++ GP+ NRV+R +PD D FLR++F DED L +P++S+
Sbjct: 442 WVFKAMVAPTRIFLQGPDPESRNRVLRMFPDHGDYFLRVTFCDEDGQDLS---FNPRVSN 498
Query: 327 TNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA----------SRP 376
IYER L GI I ++F L FS+S R ++ W A SR
Sbjct: 499 DA------IYERYRQVLIKGIRIAGRQFSFLGFSHSSLRSHSTWFMAPFVGADGQRQSRD 552
Query: 377 ELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHV-------------------- 416
+ AA +GDF +I+ K AAR+GQ+F+ + A+ +
Sbjct: 553 TILAA-----LGDFSDIRIPAKCAARIGQAFSETPYAVDLFKSGIGVRWIPDVKSADGER 607
Query: 417 --DSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYKVTL--------------RNNM 460
+G +S E K T + FQIR+ G K L + +M
Sbjct: 608 VFSDGVGTLSRAAVEEFCKALPGRSTTATCFQIRWAGVKGLLVLDTRLQGKVICVRKESM 667
Query: 461 FKYKSE-----------STSLDILANSKYQREGVARLRLDNVFERKQREVVARLDAILT- 508
K+ S+ S L ++ N + + D+ F Q + + L A+
Sbjct: 668 MKFPSQDLQELGICDLASRPLRLVLNRQVIKILEDMGTRDSWFLALQHDALEFLRAVTAT 727
Query: 509 --DSSKVQEALELMSSAENTNVLKEL--LNCGYKPDAEPFLSMMPQTFHASNLLELRTRA 564
++S + ++ S+ ++ +K+L ++ Y+ DA FL + + L L+ +A
Sbjct: 728 ALNTSTFLQYQDIGSAIGLSSFIKQLDKMDIDYRRDA--FLKSVVEHVVLRELRLLKHKA 785
Query: 565 RIFIQNGQAMMGCLDEKGTLEYGQ----------------------GLMVVAKKPCLHPG 602
RI + G + G +DE G L+ Q G ++V + P LHPG
Sbjct: 786 RIPVHKGVTLFGVMDETGFLQENQVYVTYDATRGKSGERLDTTLTDGPIIVTRSPALHPG 845
Query: 603 DMRVLRAVDVPALH---HMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ 659
D++ ++ V P H + +C++F KG R ++ SG D DG++Y + WD P
Sbjct: 846 DIQYVQMVTPPESHPLRSLRNCIVFSQKGSRDLPSQLSGGDLDGDLYNIIWDPRARPQWT 905
Query: 660 FQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCP 719
F P YT L R VT +D+ ++F D++ +D LG+I H + A + C
Sbjct: 906 FAPADYTRVVPPSLDRPVTRQDIADFFVDFMKSDILGLIAIRHQIMADVQDLGTQDGECI 965
Query: 720 DLVKLSSIVGDFSKTGVAAT---IPSRLRVKIYPDFM------------------EKQDK 758
L ++ S D+SKTG+A +P R + PDF+ E+ D
Sbjct: 966 RLAEMHSTAVDYSKTGIAVNWRDLPRAPRSR--PDFLAPAPPLHLYDLGQIGHIAEEDDD 1023
Query: 759 T----------WYESQHIVGNLYREVN 775
++ S+ I+G LYRE++
Sbjct: 1024 DGNDMALAKPRYHRSEKILGRLYREID 1050
>gi|330921324|ref|XP_003299375.1| hypothetical protein PTT_10351 [Pyrenophora teres f. teres 0-1]
gi|311326958|gb|EFQ92511.1| hypothetical protein PTT_10351 [Pyrenophora teres f. teres 0-1]
Length = 1237
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 164/569 (28%), Positives = 252/569 (44%), Gaps = 98/569 (17%)
Query: 270 KILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNG 329
K VTP+ + GP+ +SNR++R Y + F+R+ F DED S P+ S N
Sbjct: 443 KATVTPTGILLRGPDWDVSNRILRKYGTRTEYFMRVFFADEDG---LSVFHDPRASQDN- 498
Query: 330 ERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA----SRPELTAADIRE 385
+YER S LRNGI + ++ ++ L FS++ R + W A + A DI
Sbjct: 499 -----VYERFRSVLRNGISVSERTYQFLGFSHASLRTHQAWFMAPFEMNGTRFRARDIIS 553
Query: 386 RMGDFREIKNVTKYAARLGQSFASSREALHVDSNI--------------------GKISA 425
+GDF I + +AR+GQ+F+ + ++ V S G IS
Sbjct: 554 DLGDFSHIHCSARCSARIGQAFSDTIFSVPVSSTAYVTETKPDIVRNGRTFSDGCGTISL 613
Query: 426 ELAETVAKKCGYAIYT--PSAFQIRYGGYKVTL-------------RNNMFKYKSESTSL 470
E+ V T P+ QIR+ G K L R +M KY ++ T
Sbjct: 614 EILRKVWNTLPPERKTQRPTILQIRFRGAKGVLSLDESLAGEQLHIRQSMTKYIAKETWR 673
Query: 471 DI-LANSKYQ-------REGVARLRLDNV----FERKQREVVARLDAILTDSSKVQEALE 518
D+ L + Y+ + + L V F+ Q E V L I LE
Sbjct: 674 DLELCGAAYKPLQVFLNHQFIKILEDLGVPARNFKAVQDEAVNALKMITEHPLNAASFLE 733
Query: 519 LMSSAENTNV--LKELLN-CGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMM 575
S V L EL++ G A+ FL+ + + +NL L+ RARI I+ G +
Sbjct: 734 YSHSGVYAKVPRLFELMHQIGLSFHADRFLTDIVEVAAMTNLRSLKYRARIPIEQGHLLY 793
Query: 576 GCLDEKGTLEYGQGLM-----------------------VVAKKPCLHPGDMRVLRAVDV 612
G +DE L+ GQ + V+ + P LHPGD++++ AVDV
Sbjct: 794 GIMDETNFLQEGQVYIATQDYEKSGSGKLQRRILVGERIVITRAPALHPGDVQLVTAVDV 853
Query: 613 PA---LHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAP 669
PA L + +CV+F +G R ++ SG D DG+++ + +D +P P Y
Sbjct: 854 PANSSLRALHNCVVFSQRGARDLPSQLSGGDLDGDLFHIIYDQRLVPDFTVPPADYKSNG 913
Query: 670 EKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPD---LVKLSS 726
+ L R V + D+ ++F +++ D LG I N H + A DK+ + P+ L +L+S
Sbjct: 914 ARDLGRPVEVNDIVDFFIEHMNMDRLGQISNKHKIRA----DKSTGTKDPECLLLAQLAS 969
Query: 727 IVGDFSKTGVAATIPSRLRV--KIYPDFM 753
DFSK+G+ A I R I PDFM
Sbjct: 970 DAVDFSKSGIPADISKIPRGFDHIRPDFM 998
>gi|402590834|gb|EJW84764.1| RNA-dependent RNA polymerase, partial [Wuchereria bancrofti]
Length = 1136
Score = 189 bits (479), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 178/696 (25%), Positives = 302/696 (43%), Gaps = 125/696 (17%)
Query: 266 IYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQIS 325
+ + K++ TP ++ PE+ ++NRV+R + +E LR F D++ +L +
Sbjct: 60 VLIRKVMATPLRLLLLPPEVMMTNRVIRHFGEEYA--LRCVFRDDNGQRLVPKEFTR--G 115
Query: 326 STNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFAS-------RPEL 378
+ ++ I + + TL G+ I + ++ LA+SNSQ R+ +M++ E+
Sbjct: 116 RSLQDQSLIIPDLIYRTLGTGLHIASRHYQFLAWSNSQMRDGGCYMYSDATVNDEVHGEM 175
Query: 379 T--AADIRERMGDFREIKNVTKYAARLGQSFASSR------------------------- 411
DIR MGDF KNV K +R+GQ F ++
Sbjct: 176 VYNVEDIRRWMGDFTASKNVPKLMSRMGQCFTQAQPTIMLKKDDWKVEDDILGGIVHPET 235
Query: 412 -EALHVDSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYKVTL----------RNNM 460
E + +G+IS + A+ +AK G TPS +Q+R+ G+K L + N+
Sbjct: 236 GEVFNFSDGVGRISKKYADRIAKTLGLCP-TPSCYQVRFKGFKGVLCIDPLLDELDQANI 294
Query: 461 FKYKSESTSLDILANSKYQREGVARLRLDNVFERKQREV---------------VARLDA 505
K+E + S + LD V E++ R + + +L A
Sbjct: 295 VFRKTEVEVVKYSMPSPVCLNRPLIMILDQVSEKQGRHLHKKVCNRIHSLLELELDKLAA 354
Query: 506 ILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRT--- 562
++ D + E EL S +L + G EPF + H N+ T
Sbjct: 355 MMFDENIATE--ELSSRLSLPIDFHQLHSNGITFTNEPFFRSLLIAVHRYNISWFLTLYE 412
Query: 563 -----RARIF------IQN------GQAMMGCLDEKGTLEYGQ----------------- 588
IF IQN G+ M G +D+ G L+YGQ
Sbjct: 413 YSNIATGIIFRIASKQIQNFLPCSMGRTMYGVIDDTGLLQYGQVFIQYSSSMQYVLTKKI 472
Query: 589 ---GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEI 645
G ++V K PC GD+R+ AV AL H+ D ++FP G RPH++E +GSD DG+
Sbjct: 473 VYTGSVMVTKNPCHVAGDVRMFEAVYQDALLHLCDVIVFPRYGPRPHSDEMAGSDLDGDE 532
Query: 646 YFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVY 705
Y V +D + + + + T D+ ++F Y+ DS+G + NAH++
Sbjct: 533 YTVIFDKELFFENNERAMFFPKSIPSECGTPPTTGDMIDFFLKYLSQDSIGRMSNAHLII 592
Query: 706 AYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAAT-IPSRLRVKIYPDFMEKQDKTWYESQ 764
C D+ + ++ DF KTGVAA + S + ++ PD+M+ + Y S+
Sbjct: 593 EI----------CDDIARKCAVAVDFPKTGVAAKPLLSHEQCEVMPDYMQNMIRPSYRSK 642
Query: 765 HIVGNLYREVNGIAPSTTTIKS--FAKEGAMQFYDTDMEVNGFKEVA-MQFDGFKYRTEY 821
++G LYR+ + + ++ FA Q YD + F E + + + + R EY
Sbjct: 643 RLLGELYRKARRVEDISEIVQGTKFADYCDPQLYDESL----FHEQSELIQESLRLRDEY 698
Query: 822 DNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRD 857
+++ LMD YGI EA ++S M + + + ++D
Sbjct: 699 HSRIQQLMDEYGISDEASVISGHSMTIKRIIEMEKD 734
>gi|358366477|dbj|GAA83098.1| rna-dependent rna polymerase [Aspergillus kawachii IFO 4308]
Length = 1212
Score = 189 bits (479), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 151/599 (25%), Positives = 265/599 (44%), Gaps = 95/599 (15%)
Query: 265 LIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQI 324
L ++K++VTP++V GPE+ NR++R +P D F+R+ F DE+ L+ + ++
Sbjct: 416 LTPIHKVMVTPTRVTLHGPELEPRNRILRRFPKHHDFFIRVQFCDENGQDLH---FNSRV 472
Query: 325 SSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPEL------ 378
+ ++ R S L GI I + + L +S+S R + +W S P +
Sbjct: 473 HYDD------VFSRFKSVLTRGIQIAGRTYSFLGWSHSSLRSHAVWF--SSPFVDESGQF 524
Query: 379 -TAADIRERMGDFREIKNVTKYAARLGQSFASSREALH-------------VDSN----- 419
T I + +GDF +I++ + AAR+GQ+F + A+ V SN
Sbjct: 525 QTHFSIIKALGDFSKIQSPARCAARIGQAFTDTHYAISLSEYDINVSEVADVTSNDGKRV 584
Query: 420 ----IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK-------------VTLRNNMFK 462
+G +S ++AET+ P+ FQ+R GG K V +R +M K
Sbjct: 585 FSDGVGTLSWDVAETIWHHIPEKKGLPTCFQVRLGGAKGMLAVDGRLSGSQVNIRPSMIK 644
Query: 463 YKSESTSLDILANSK------YQREGVARLR----LDNVFERKQREVVARLDAILTDSSK 512
++ + L+I + R+ + L D F Q + +L ++ +
Sbjct: 645 FQGDMKDLEICDMAAKPMGLVLNRQMIKILEDMGTPDEWFITLQEAALTKLRSVTASAHN 704
Query: 513 VQEALELMSSAENTNVLKELLNCGYKP---DAEPFLSMMPQTFHASNLLELRTRARIFIQ 569
+ ++ + ++ + + +C + EPF+ + + L L+ +ARI +
Sbjct: 705 SEVFIKKQAVGDSIGLYRLFRHCHLRDLDYKKEPFIRSVVEAVVLKELRLLKHKARIPVF 764
Query: 570 NGQAMMGCLDEKGTLEYGQ------------------GLMVVAKKPCLHPGDMRVLRAVD 611
G + G +DE G LE Q G ++V + P LH GD++ + V
Sbjct: 765 KGITLFGVMDETGLLEAEQVYVTYEPVEGRHAPPPNSGTVLVTRSPALHDGDIQYAQNVI 824
Query: 612 VPALH---HMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPA 668
P H + +C++F +KG R ++ SG D DG+I+ V WD D P F P Y
Sbjct: 825 PPDNHPLAELTNCIVFSSKGYRDLPSQLSGGDLDGDIFNVIWDTDAYPVRTFAPADYPRV 884
Query: 669 PEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIV 728
+ R V +D+ ++F D++ D LG+I H++ A E + C L +L S
Sbjct: 885 SPVDIGRPVERDDMAQFFLDFMKTDHLGMIATRHMIMADQEEEGTSHPVCRQLAQLHSTA 944
Query: 729 GDFSKTGVAATIPSRLRVKIY-PDFMEK------QDKTWYE-SQHIVGNLYREVNGIAP 779
DFSKTG+ + + + PDFM +K+ E ++++ Y E N + P
Sbjct: 945 VDFSKTGIPVQLGDIPKGNPFRPDFMAPGPVARIHNKSEIELEEYVIQTAYDEDNDLEP 1003
>gi|189200837|ref|XP_001936755.1| RNA-dependent RNA polymerase [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187983854|gb|EDU49342.1| RNA-dependent RNA polymerase [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 953
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 163/567 (28%), Positives = 254/567 (44%), Gaps = 96/567 (16%)
Query: 270 KILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNG 329
K VTP+ + GP+ +SNR++R Y + F+R+ F DED S P+ S N
Sbjct: 137 KATVTPTGILLRGPDWDVSNRILRKYGTRTEYFMRVFFADEDG---LSVFHDPRASQGN- 192
Query: 330 ERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA----SRPELTAADIRE 385
+YER S L++GI + + ++ L FS++ R + W A + A DI
Sbjct: 193 -----VYERFRSVLQHGIFVAGRTYQFLGFSHASLRSHQAWFMAPFEMNGTMFRARDIIS 247
Query: 386 RMGDFREIKNVTKYAARLGQSFASSREALHVDSN--IGKISAELAE---TVAKKCGY--- 437
+GDF I + +AR+GQ+F+ + ++ V S + + A++A T + CG
Sbjct: 248 DLGDFSHIHCSARCSARIGQAFSDTIFSVPVPSTAYVTETKADIARNGRTFSDGCGTISL 307
Query: 438 --------------AIYTPSAFQIRYGGYKVTL-------------RNNMFKYKSESTSL 470
P+ QIR+ G K L R +M KY ++ T
Sbjct: 308 EILRKVWNTLPPERKAQRPTILQIRFRGAKGVLSLDESLVGEQLHIRQSMTKYIAKETWR 367
Query: 471 DI-LANSKYQ-------REGVARLRLDNV----FERKQREVVARLDAILTDSSKVQEALE 518
D+ L + Y+ + + L V F+ Q E V L I LE
Sbjct: 368 DLELCGAAYKPLQVFLNHQFIKILEDLGVPARNFKAVQDEAVNALKMITEHPLNAASFLE 427
Query: 519 LMSSAENTNV--LKELLN-CGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMM 575
S V L EL++ G A+ FL+ + + +NL L+ RARI I+ G +
Sbjct: 428 YSHSGVYAKVPRLFELMHQIGLSFHADRFLTDIVEVAAMTNLRSLKYRARIPIEQGHLLY 487
Query: 576 GCLDEKGTLEYGQGLM---------------------VVAKKPCLHPGDMRVLRAVDVP- 613
G +DE L+ GQ + V+ + P LHPGD++++ AVDVP
Sbjct: 488 GIMDETNFLQEGQVYIATQDYDKSGKLRRRILVGERIVITRAPALHPGDVQLVTAVDVPE 547
Query: 614 --ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEK 671
+L + +CV+F +G R ++ SG D DG+++ + +D IP P Y K
Sbjct: 548 HSSLRALHNCVVFSQRGARDLPSQLSGGDLDGDLFHIIYDQRLIPDFTMPPADYKSNGAK 607
Query: 672 ILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPD---LVKLSSIV 728
L R V + D+ ++F +Y+ D LG I N H + A DK+ P+ L +L+S
Sbjct: 608 DLGRPVEVNDIVDFFIEYMNMDRLGQISNKHKIRA----DKSTGTNDPECLLLAQLASDA 663
Query: 729 GDFSKTGVAATIPSRLRV--KIYPDFM 753
DFSK+G++A I R I PDFM
Sbjct: 664 VDFSKSGISADISKIPRGFDHIRPDFM 690
>gi|327354796|gb|EGE83653.1| RNA-dependent RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
Length = 1240
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 161/620 (25%), Positives = 269/620 (43%), Gaps = 117/620 (18%)
Query: 266 IYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQIS 325
+ ++++ VTP +Y GP + NRV+R Y + +D+FLR+ F+DE P
Sbjct: 419 VSIHRVQVTPCGIYLDGPYMESKNRVLRRYANHVDHFLRVEFMDESG--------DPVRY 470
Query: 326 STNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWM----FASRPELTAA 381
+R L+NGI I +KFE L FS+S R T W +A A
Sbjct: 471 DPRASIDLIFQQRFKGVLKNGINIAGRKFEFLGFSHSSLRSQTCWFVAPFYADGILYNAT 530
Query: 382 DIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSNIGKISAELAE----------TV 431
I + +G F I + K AAR+GQ+F+ + ++ + I + ++ T+
Sbjct: 531 TIIQNLGRFDHINSPAKQAARIGQTFSETLTSIPISEEIISVVQDVKRNDRVFSDGVGTI 590
Query: 432 AKKCGYAIYT---------PSAFQIRYG--------------GYKVTLRNNMFKYKSEST 468
+ Y I+ P+ FQIR G + LR +M K+ ++
Sbjct: 591 SPSVMYMIWKDYSLRTMVKPTVFQIRIAAGAKGMVSLDSRNKGESLVLRPSMIKFPVTTS 650
Query: 469 --------------SLDILANSKYQREGVARLRLD-NVFERKQREVVARLDAILTDSSKV 513
SL N++ + + L +D NVF + QR+ + RL A T +++
Sbjct: 651 FNAYNIEICGSGIRSLPFFLNAQLIKI-LEDLGVDGNVFLKLQRDEILRLRATATSTTQA 709
Query: 514 QEALELMSSAENTNV---LKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQN 570
+ LE + A++ + + L G + + FL + + L +L+ RARI +
Sbjct: 710 AKFLEDTNIAKSVGLPWLISILEALGLRHSDDEFLRRVMELVVLIKLRDLKYRARIRVPK 769
Query: 571 GQAMMGCLDEKGTLEYGQGL-----------------MVVAKKPCLHPGDMRVLRAVDVP 613
+ G +DE G L+ G+ +VV + P +HPGD+++ +AVDVP
Sbjct: 770 AVTLFGIMDETGYLKEGEIFCTSLSDKGRREVLLNPKVVVTRSPAMHPGDVQIAKAVDVP 829
Query: 614 A---LHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPE 670
A L + +C+ F G+R + SG D DG++Y V ++ IP + P Y E
Sbjct: 830 ADSPLRQLHNCIAFSQHGDRDLPSMLSGGDLDGDLYNVIFEDTLIPRVISPPAQYPRVQE 889
Query: 671 KILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGD 730
K+L R V +D+ ++F ++ D LG I H A + +C L +L S D
Sbjct: 890 KVLDRPVVRDDIIDFFVTFMQQDQLGRIATVHQTIADQKALGTFDPQCLLLAELHSTAVD 949
Query: 731 FSKTGVA---ATIPS-------------RLRVKIYPDFMEKQDKT--------------- 759
FSK+GV A IP R+R+ +E+ D+
Sbjct: 950 FSKSGVPVDLARIPKFPRYRPDFQAPGPRVRIAESLSLLEEHDQMTVLDDDDDEEDERPT 1009
Query: 760 --WYESQHIVGNLYREVNGI 777
+Y+S+ I+G LYR ++ +
Sbjct: 1010 ARYYKSEKILGKLYRAIDEV 1029
>gi|449304105|gb|EMD00113.1| hypothetical protein BAUCODRAFT_119665 [Baudoinia compniacensis UAMH
10762]
Length = 1187
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 172/654 (26%), Positives = 277/654 (42%), Gaps = 130/654 (19%)
Query: 230 RECCYDPVSWLREQYRKHVSS-GQFPTSPAVALDGGLIYVN---KILVTPSKVYFCGPEI 285
REC + +R RK+ + Q+ L +++N K+++TP+ Y GP
Sbjct: 382 RECS---IRAMRTLIRKYADAYDQYEPGNLYELAKAYMHINLIHKVVITPAGTYLEGPSA 438
Query: 286 SLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYE-RVLSTLR 344
+NRV+R Y + D F+R+ F DED ++ P+ S + IY R L
Sbjct: 439 EPTNRVLRKYATQTDCFIRVVFQDEDGSSMHH---DPRAS------QEAIYHIRYKGVLD 489
Query: 345 NGIVIGDKKFETLAFSNSQERENTLWMFA------SRPELTAADIRERMGDFREIKNVTK 398
I I + F L FS+S R + W A +R + + + + +GDF I+ K
Sbjct: 490 GTINIAGQGFSFLGFSHSSLRNRSCWFMAPLIDSRTRTLVLSPQVIKELGDFTHIRTPAK 549
Query: 399 YAARLGQSFASSREALHV------------------DSNIGKISAELAETVAKKCGYA-I 439
AAR+GQ F + ++ V +G +S +L E V + G
Sbjct: 550 CAARIGQCFTDTTASVSVKDWEVGKLPVVERNGRDFSDGVGTLSRQLFEDVWQVYGMRNA 609
Query: 440 YTPSAFQIRYGGYK-------------VTLRNNMFKY-KSESTSLDILANSKYQREGVAR 485
P+ QIR+ G K + LR NM K+ S+S L+I G
Sbjct: 610 LKPTVLQIRFQGAKGMVSLDSRLQGRQLLLRTNMEKFVGSQSRVLEIC--------GAGF 661
Query: 486 LRLDNVFERKQREVVARL----DAILT-DSSKVQEALELMSSAENTNVL---KELLNCGY 537
L V R+ +++ L +A+L+ + +VQ+ ++ SA NT L EL
Sbjct: 662 RPLPMVLNRQSVQILEDLGTPTEAVLSLQTREVQKLQCMLESAVNTASLLETMELTKAAK 721
Query: 538 KPDA-------------EPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL 584
PD + FL+ + Q L +++ R RI I +G + G +DE G L
Sbjct: 722 LPDLIDMLDQARLDFRHDRFLTGIAQMAVVHQLRDIKYRGRIHINDGVTLYGIMDETGYL 781
Query: 585 EYGQGLMV------------------VAKKPCLHPGDMRVLRAVDVPA---LHHMVDCVL 623
+ G+ +V + + P +HPGD++ + AV VPA L H+ + V+
Sbjct: 782 QEGEVYVVTEKAPDGGRKELIRNNILITRSPAMHPGDIQQVNAVSVPADSPLKHLSNVVV 841
Query: 624 FPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVE 683
F G R ++ SG D DG++Y + WD P P Y L R VT +D+
Sbjct: 842 FSQHGARDLPSQLSGGDLDGDLYNIIWDSTLWPTKFATPADYPRVKPVELDRIVTGKDMS 901
Query: 684 EYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATI--- 740
++F ++ + LG+IC+ H+ A P C L ++S D+SKTG+ +
Sbjct: 902 DFFVTFMETNQLGMICSIHMQLADQRPMGTWDPDCIKLAAMASTAVDYSKTGIPVDMKQC 961
Query: 741 PSRLRVKIYPDFMEKQDKT-------------------WYESQHIVGNLYREVN 775
P R + PDFM + +Y+SQ +G LYR ++
Sbjct: 962 PKYDRCR--PDFMAPSPRILLSEQGYLDLEDELSRPYRYYKSQKALGQLYRAID 1013
>gi|241244478|ref|XP_002402311.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
gi|215496312|gb|EEC05952.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
Length = 519
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 152/551 (27%), Positives = 241/551 (43%), Gaps = 129/551 (23%)
Query: 383 IRERMGDFREIKNVTKYAARLGQSFASSREALHV-------------------------D 417
IR+ MG F I NV K AR+GQ F+S+ +A+ V
Sbjct: 1 IRDWMGRFDGIPNVAKRMARMGQCFSSTEQAVLVRKHEVRMVPDMEGGAHPVSRKPYVFS 60
Query: 418 SNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK--------------VTLRNNMFKY 463
+G +S LA+ V K PSA QIRY G K + LR +M K+
Sbjct: 61 DGVGMMSVPLAQEVYKVMKLK-ERPSAIQIRYAGAKGMLCINPELPNQKLLYLRPSMQKF 119
Query: 464 KSESTS-LDIL--------------------------ANSKYQRE--GVARLRLDNVFER 494
S+ L+++ + +Y E G+ ++ D + R
Sbjct: 120 PCTSSDYLEVVKVSAPRKLHTPLGRVHYLDSDRTIHQVSGEYHLEELGLGCIKDDAIMSR 179
Query: 495 KQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHA 554
+V+ A+LT + + ++M S T + N + HA
Sbjct: 180 ----MVSTAMAVLTKPRYIISSCDIMVSCSCT-----MFN-------------LVVVLHA 217
Query: 555 SNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ------------------------GL 590
+ L +TR + + + M+G +D G L YGQ G
Sbjct: 218 AGL-RYKTRIALPVDRARNMLGVVDTTGVLRYGQVFVQCSEMGARASQQGPPKCRVITGQ 276
Query: 591 MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
++V K PCLHPGD+R A+D P LHH+VDC++FP +G RPH +E +GSD DG+ Y V W
Sbjct: 277 VLVTKCPCLHPGDVRKFTAIDEPRLHHVVDCIVFPGQGHRPHPDEMAGSDLDGDEYIVIW 336
Query: 651 DHDRI-PPLQFQPTAYT---PAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYA 706
+ + P QP ++ P PE+ ++TI D+ ++ +YI NDS+GI+ NAH+ +A
Sbjct: 337 EPSLLFPGYNKQPMNFSDRNPEPER---GEITINDMIQFLCNYIKNDSIGILSNAHLAWA 393
Query: 707 YSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEK-QDKTWYESQH 765
E + S RC + + SI DF+K+G A + R YPDFMEK K Y S
Sbjct: 394 DQEEEGIYSRRCLAIAEKISICLDFAKSGRTAYLRREERPMFYPDFMEKGSHKISYRSDR 453
Query: 766 IVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKL 825
++G LYR + + ++ + ++V G++ + +Y+ +L
Sbjct: 454 VLGLLYRTCRSLEAAVGSLGHRHVDAGRCL---ALDVPGWQR--YESAALAALADYNTRL 508
Query: 826 GNLMDYYGIKT 836
+++ YGI +
Sbjct: 509 RRILNQYGIAS 519
>gi|358369173|dbj|GAA85788.1| RNA-directed RNA polymerase (Sad-1) [Aspergillus kawachii IFO 4308]
Length = 745
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 146/504 (28%), Positives = 232/504 (46%), Gaps = 85/504 (16%)
Query: 442 PSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLDILANSKYQREGVARLRL 488
PSAFQ R GG K + +R + K+ + L+I+ S+Y + R +
Sbjct: 14 PSAFQFRLGGCKGMLAVSSDAQPQEIHIRESQNKFPTVHNGLEIIRWSQYSMATLNRQLI 73
Query: 489 ---------DNVFERKQREVVARLDAILTDSSKVQEALE-LMSSAENTNVLKELLNCGYK 538
D VF K + ++ LD + S+ E L+ + + T + ++++ G++
Sbjct: 74 LVMSTLGIPDEVFHAKLKSMLRALDEAMESDSRAIEVLKKYVDPNQTTLTVSQMVSDGFR 133
Query: 539 PDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL-------------- 584
EPF + + + ++ L+ +A+I I NG ++G +DE G L
Sbjct: 134 RSKEPFFTSILALWRTWHIKYLKEKAKIVIDNGTNLLGVMDETGILKGYFYDKIPKEDAS 193
Query: 585 ---------------------------EYGQGLMVVAKKPCLHPGDMRVLRAVDVPALHH 617
E +GL ++A+ P LHPGD+RV+RAV+VP LH
Sbjct: 194 LEQKLAALPEIFLQVPRTSGSEGGAQYEVIEGLCILARNPSLHPGDIRVVRAVNVPELHS 253
Query: 618 MVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQF-QPTAYTPAPEKILARD 676
+ D V+ P G+R + CSG D DG+ Y V WD D I F P YT + L D
Sbjct: 254 LRDVVVLPQTGDRDIASMCSGGDLDGDDYLVIWDQDLIHKDWFLDPMRYTSNKAQDLDHD 313
Query: 677 VTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGV 736
VT+++V +F Y+ NDSL I +AHV +A D +C L +L S D++KTG
Sbjct: 314 VTVDEVTSFFVMYMKNDSLPTIAHAHVAWADQLEDGVNEEKCIRLAQLHSDAVDYNKTGR 373
Query: 737 AATIPSRLRVKIYPDFMEK---QDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAM 793
A + L+ + +P FMEK +D+ Y S+ I+G LY V + F M
Sbjct: 374 PAIMTRNLQPRRWPHFMEKPKPKDQI-YCSRKILGQLYDAVERV--------DFVPSLEM 424
Query: 794 QFYDTDMEVNGFKEVAMQFDGF--KYRTEYDNKLGNLMDYYGIKTEAEMLSRCIM---EM 848
F + +N EV+ F + E+D + +M + IKTE E+ S I+ M
Sbjct: 425 PF--DERILNCSIEVSEDLYTFAKNLKNEFDTAMRRIMAQHEIKTEFEVWSTFILNHSHM 482
Query: 849 AKSFDKKRDLEAISFSVR-SLRKE 871
+K + ++ AIS + R + RK+
Sbjct: 483 SKDYKFHEEIGAISAAHRETFRKQ 506
>gi|320593975|gb|EFX06378.1| RNA-dependent RNA polymerase [Grosmannia clavigera kw1407]
Length = 1259
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 168/608 (27%), Positives = 276/608 (45%), Gaps = 107/608 (17%)
Query: 265 LIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQI 324
L + ++ VTP+++ GPE NRV+R +P++ D F+R+ F DE+ L +L
Sbjct: 394 LAPICRVSVTPTRILLYGPEFEKKNRVLRKFPNQHDCFIRVQFCDENGDSL--RLLG--- 448
Query: 325 SSTNGERRT---RIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTA- 380
RRT ++Y+R + ++NGI I + ++ L +S+S R +++W A + T
Sbjct: 449 ------RRTSYEKVYKRFIDIMKNGIQIVGRTYKFLGWSHSSLRAHSMWFTAPFIDDTGR 502
Query: 381 ----ADIRERMGDFREIKNVTKYAARLGQSFAS---------------------SREALH 415
I +GDF I++ K AAR+GQ+F+ S++ H
Sbjct: 503 LQTHLTIISTLGDFAGIRSPAKCAARIGQAFSETPYAVPLSEHKISVMLVDDVKSKDGKH 562
Query: 416 VDSN-IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK-------------VTLRNNMF 461
V S+ +G IS + A V K + P+ FQ+RY G K + LR +M
Sbjct: 563 VFSDGVGTISLDAAAAVWKYVPKSKRNPTCFQVRYAGAKGMLSLDTRLQGSQILLRPSMI 622
Query: 462 KYKS-ESTSLDILANSK-----YQREGVARLRLDNV----FERKQREVVARLDAILTDSS 511
K++S E+ +L+I +K R+ + L +V F R Q + + +L L SS
Sbjct: 623 KFESNETENLEICDVAKAMPLYLNRQMIKILEDMSVPRKWFLRLQNDALQQLR--LIASS 680
Query: 512 KVQEALELMSSAENTNVLKELLNCGYKPD-----AEPFLSMMPQTFHASNLLELRTRARI 566
A L + T++ L EPFL + L L+ +ARI
Sbjct: 681 AYNMAYFLKHQSVGTSIKLHKLLLLTDKLGLDYRTEPFLRRAAEAVVLRELRLLKHKARI 740
Query: 567 FIQNGQAMMGCLDE-----KG----TLEYGQGL--------------MVVAKKPCLHPGD 603
+ G + G +DE KG T E QGL ++V + P LHPGD
Sbjct: 741 PVPFGITLFGVMDETEFLAKGQVYVTFETKQGLKPQRFEQPPGHAVYLLVTRSPALHPGD 800
Query: 604 MRVLRAVDVPALH---HMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ- 659
++ + P H + +CV+F AKG R ++ SG D DG+I+ + WD + P++
Sbjct: 801 IQWACNMIPPEGHPLRELSNCVVFSAKGARDLPSQLSGGDLDGDIFNLIWDREVCRPVEL 860
Query: 660 --FQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNR 717
++ Y P + + R+V ED+ ++F D++ D LG I H++ A + + +
Sbjct: 861 KTYRAAEYARVPPQNIWREVQTEDIAQFFIDFMKTDHLGTIATRHMILADQKEMGTLDSD 920
Query: 718 CPDLVKLSSIVGDFSKTGVAATIPSRLRVKIY-PDFMEK------QDKTWYESQHIVGNL 770
C + +L S DFSKTG+ A + R + PDF+ +K E + V N
Sbjct: 921 CIAMAELHSTAVDFSKTGIPADLNELRRASPFRPDFLAPGSLVYVHNKADIELEKYVANN 980
Query: 771 YREVNGIA 778
R+V+ A
Sbjct: 981 ERDVHAEA 988
>gi|154272513|ref|XP_001537109.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409096|gb|EDN04552.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1209
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 167/591 (28%), Positives = 262/591 (44%), Gaps = 92/591 (15%)
Query: 266 IYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQIS 325
I +++ +TP Y GP NRV+R Y +D+FLR+ FVDE + P+ S
Sbjct: 419 ISIHRAQITPCGTYLDGPHAETKNRVLRHYSSHVDHFLRVEFVDETGDPVR---YDPRAS 475
Query: 326 STNGERRTRIYE-RVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA----SRPELTA 380
I+E R + L++GI I +KFE L FS+S R T W A R A
Sbjct: 476 I------DMIFESRFKTVLKSGINIAGRKFEFLGFSHSSLRSQTCWFVAPFYKDRILYNA 529
Query: 381 ADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDS---NIGKISAELAETVAKKCGY 437
+ I + +G F I++ K AAR+GQ+F+ + ++ + +IGK + G
Sbjct: 530 STIIQNLGRFDHIQSPAKQAARIGQTFSDTLTSIPISDKYISIGKDVERNGRVFSDGVGA 589
Query: 438 AIYTPSAFQIRYGGYKVTLRNNMFKYK--------------SESTSLDILANSKYQREGV 483
+ R G + LR +M K+ S L N++ + +
Sbjct: 590 KGMI--SLDSRKKGKSLVLRPSMIKFHLPNSYNAFNIEICGSGLKPLPFFLNAQMIKI-L 646
Query: 484 ARLRLD-NVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNC----GYK 538
L +D +VF R Q + ++RL A T ++K LE + A++ L L+N G +
Sbjct: 647 EDLGVDESVFLRLQADEISRLRATATSTAKAARFLEDTNIAKSVG-LPWLINVLEGFGLR 705
Query: 539 PDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQGL-------- 590
+ FL + + L +L+ RARI + N + G +DE G L+ G+
Sbjct: 706 HSNDEFLRRVMELSVLIKLRDLKYRARIRVPNAVTLFGIMDETGILKEGEVFCTSLSDKG 765
Query: 591 ---------MVVAKKPCLHPGDMRVLRAVDVPA---LHHMVDCVLFPAKGERPHTNECSG 638
+VV + P +HPGD+++ RAVDVPA L + +C+ F G R + SG
Sbjct: 766 VREVLVNPRVVVTRSPAMHPGDVQIARAVDVPADSPLRQLHNCIAFSQHGHRDLPSMLSG 825
Query: 639 SDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGII 698
D DG++Y V +D+ +P +P Y EK+L R V ED+ ++F ++ D LG I
Sbjct: 826 GDLDGDLYNVIFDNTLLPKRIARPAEYPRVQEKVLGRTVVREDIIDFFVTFMQQDQLGRI 885
Query: 699 CNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVA---ATIPS------------- 742
H A P C L +L S DFSKTGV A IP
Sbjct: 886 ATIHQALADQRPLGTFDPECLLLAELHSTAVDFSKTGVPVDLARIPKFPSCRPDFQAPSP 945
Query: 743 RLRVKIYPDFME----------------KQDKTWYESQHIVGNLYREVNGI 777
R+R+ +E + +Y+S++I+G LYR ++ +
Sbjct: 946 RIRIAENLSLLEGDMDAVQDGGDEDDDERPAVRFYKSENILGKLYRSIDEV 996
>gi|325095101|gb|EGC48411.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus H88]
Length = 1209
Score = 187 bits (474), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 164/590 (27%), Positives = 261/590 (44%), Gaps = 90/590 (15%)
Query: 266 IYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQIS 325
I +++ +TP Y GP NRV+R Y +D+FLR+ FVDE + P+ S
Sbjct: 419 ISIHRAQITPCGTYLDGPHAETKNRVLRHYSSHVDHFLRVEFVDETGDPVR---YDPRAS 475
Query: 326 STNGERRTRIYE-RVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA----SRPELTA 380
I+E R + L++GI I +KFE L FS+S R T W A R A
Sbjct: 476 ID------MIFESRFKTVLKSGINIAGRKFEFLGFSHSSLRSQTCWFVAPFYKDRILYNA 529
Query: 381 ADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDS---NIGKISAELAETVAKKCGY 437
+ I + +G F I++ K AR+GQ+F+ + ++ + +IGK + G
Sbjct: 530 STIIQNLGRFDHIQSPAKQVARIGQTFSDTLTSIPISDKYISIGKDVERNGRVFSDGVGA 589
Query: 438 AIYTPSAFQIRYGGYKVTLRNNMFKYKSEST----SLDILANSKYQREGVARLRL----- 488
+ R G + LR +M K+ ++ +++I + +L
Sbjct: 590 KGMI--SLDSRKKGKSLVLRPSMIKFHLPNSYNAFNIEICGSGLKPLPFFLNAQLIKILE 647
Query: 489 -----DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNC----GYKP 539
D+VF R Q + ++RL A T ++K LE + A++ L L+N G +
Sbjct: 648 DLGVDDSVFLRLQADEISRLRATATSTAKAARFLEDTNIAKSVG-LPWLINILEGFGLRH 706
Query: 540 DAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQGL--------- 590
+ FL + + L +L+ RARI + N + G +DE G L+ G+
Sbjct: 707 SNDEFLRRVMELAVLIKLRDLKYRARIRVPNAVTLFGIMDETGILKEGEVFCTSLSDKGV 766
Query: 591 --------MVVAKKPCLHPGDMRVLRAVDVPA---LHHMVDCVLFPAKGERPHTNECSGS 639
+VV + P +HPGD+++ RAVDVPA L + +C+ F G R + SG
Sbjct: 767 REVLVNPRVVVTRSPAMHPGDVQIARAVDVPADSPLRQLHNCIAFSQHGHRDLPSMLSGG 826
Query: 640 DQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIIC 699
D DG++Y V +D+ +P +P Y EK+L R V ED+ ++F ++ D LG I
Sbjct: 827 DLDGDLYNVIFDNTLLPKRIARPAEYPRVQEKVLGRAVVREDIIDFFVTFMQQDQLGRIA 886
Query: 700 NAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVA---ATIPS-------------R 743
H A P C L +L S DFSKTGV A IP R
Sbjct: 887 TIHQALADRRPLGTFDPECLLLAELHSTAVDFSKTGVPVDLARIPKFPSCRPDFQAPSPR 946
Query: 744 LRVKIYPDFME----------------KQDKTWYESQHIVGNLYREVNGI 777
+R+ +E + +Y+S++I+G LYR ++ +
Sbjct: 947 IRIAENLSLLEGDMDAVQDGGDEDDDERPAVRFYKSENILGKLYRSIDEV 996
>gi|222629015|gb|EEE61147.1| hypothetical protein OsJ_15104 [Oryza sativa Japonica Group]
Length = 335
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 108/276 (39%), Positives = 152/276 (55%), Gaps = 9/276 (3%)
Query: 618 MVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDV 677
MVDC++FP +GERPH NECSG D DG++YF+ WD IP P YT +I+ V
Sbjct: 1 MVDCLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIPEKVDTPMDYTATRPRIMDHVV 60
Query: 678 TIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVA 737
T+E+++++F DY++NDSLG I AH+++A P KA S C L L S+ DF+KTG
Sbjct: 61 TLEEIQKHFVDYMINDSLGAISTAHLIHADRSPLKARSPECLQLATLHSMAVDFAKTGAP 120
Query: 738 ATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAM--QF 795
A +P LR + YPDFME+ +K Y S ++G LYR G + + + A
Sbjct: 121 AEMPRTLRPREYPDFMERWEKPMYISNGVLGKLYRSAMGHMEKSGDSGALSSSSAQPSPT 180
Query: 796 YDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIME--MAKSFD 853
YD D+EV G E +Y Y+ KL LM+YY + E E+L+ I + D
Sbjct: 181 YDPDLEVPGSDEFLQA--AEEYYELYEEKLTTLMNYYRAELEDEILTGNIRNKMLYLKRD 238
Query: 854 KKRDLEA---ISFSVRSLRKEARAWFNKKKNDSDSS 886
KR E I +V +L +EAR W + + D+S
Sbjct: 239 NKRYFEMKDRIVAAVDALHREARGWLLSSRKEEDAS 274
>gi|302510543|ref|XP_003017223.1| hypothetical protein ARB_04100 [Arthroderma benhamiae CBS 112371]
gi|291180794|gb|EFE36578.1| hypothetical protein ARB_04100 [Arthroderma benhamiae CBS 112371]
Length = 1233
Score = 186 bits (473), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 156/563 (27%), Positives = 247/563 (43%), Gaps = 85/563 (15%)
Query: 266 IYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQIS 325
+ V++ VTP+ +Y GP NR++R Y D ID F+R+ F+DE ++ P
Sbjct: 416 VLVHRATVTPAGIYLSGPYAETKNRILRKYLDNIDYFIRVEFLDETGDPVF---FDP--- 469
Query: 326 STNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWM-----FASRPELTA 380
S N E+ ++R ++ GI I ++FE L FS+S R T W A+ L A
Sbjct: 470 SANLEQI--FHQRFAGVMKRGIEIAGREFEFLGFSHSSLRAQTCWFAAPFTTANGDYLNA 527
Query: 381 ADIRERMGDFREIKNVTKYAARLGQSFASSREALHVD-------------------SNIG 421
I +G F I++ +K AAR+GQ+F+ + ++ V +G
Sbjct: 528 RTIIGNIGYFDHIRSPSKQAARIGQAFSDTLTSISVSKEVVWMRAPDVKRNDRIFSDGVG 587
Query: 422 KISAELAETVAKKCGYAI---YTPSAFQIRYGGYK-------------VTLRNNMFK--- 462
IS +L + + YA+ P+ FQIR G K + LR +M K
Sbjct: 588 VISCDLMHRIWNE--YALRERVKPTVFQIRIAGAKGMVSLDTRRKGEFLMLRESMVKFPT 645
Query: 463 ---YKSESTSLDILANSKYQREGVARLRLD-----NVFERKQREVVARLDAILTDSSKVQ 514
Y E I A Y + ++ D F + QR+ + L + + + +
Sbjct: 646 DDLYNIEICGAGIRALPFYLNNQIIKILEDLGVPFEAFHQLQRDEINFLYSTFSSTERAA 705
Query: 515 EALE---LMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNG 571
+ LE + S + L G + +PFL + + L +L+ RARI + N
Sbjct: 706 KFLEDSPVPRSLRLPWLFLVLKGLGIRYTQDPFLKRVMELTTLLRLRDLKYRARIRVPNA 765
Query: 572 QAMMGCLDEKGTLEYGQGL-----------------MVVAKKPCLHPGDMRVLRAVDVPA 614
+ G +DE G L+ + +V+ + P LHPGD++V+ AVDVPA
Sbjct: 766 VTLYGIMDETGYLKENEIYCVYLGENGRREILVRDNVVITRSPALHPGDIQVVNAVDVPA 825
Query: 615 ---LHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEK 671
L + +CV F G+R + SG D DG++Y + +D +P P Y K
Sbjct: 826 NSPLRKLHNCVAFSQHGDRDLPSMLSGGDLDGDLYNIIYDTRLVPRKTIPPADYPRVEAK 885
Query: 672 ILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDF 731
L R V ED+ ++F ++ D LG I H A + C L L S+ D+
Sbjct: 886 ELDRKVETEDIIDFFVTFMQQDQLGRIATTHQTIADQSEFGTLDQACLKLAHLHSVAVDY 945
Query: 732 SKTGVAATIPSRLRV-KIYPDFM 753
SK+G+A + S R ++ PDFM
Sbjct: 946 SKSGIAVNVLSIPRAPRVRPDFM 968
>gi|105990552|gb|ABF81698.1| RNA-dependent RNA polymerase [Zea mays]
Length = 459
Score = 186 bits (472), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 130/354 (36%), Positives = 185/354 (52%), Gaps = 59/354 (16%)
Query: 208 VFSCNSDLNQDG-KHALEMLFHLRECCYDPVSWLREQ-----YRKHVSSGQFPTSPAVAL 261
+F DL+ D + E + L+ CY+P+ ++R + RK S + +
Sbjct: 109 LFKVLEDLSIDTLRRIFEKMSKLKSTCYEPLQFIRHEAHSMNMRKKALSNKRES------ 162
Query: 262 DGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLS 321
G L+ +I +TPSK+Y GPE +SN VV+ + + +F R++FVDED KL LS
Sbjct: 163 -GKLMRCYRIHITPSKIYCLGPEEEVSNYVVKYHSEYASDFARVTFVDEDWSKLSPNALS 221
Query: 322 PQISST--NGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELT 379
+ + +T +Y R+LS L+ G IG KK+E LAFS SQ R N++WMFAS LT
Sbjct: 222 ARTEQGFFSKPLKTGLYHRILSILKEGFCIGPKKYEFLAFSASQLRGNSVWMFASNSSLT 281
Query: 380 AADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDS--------------------- 418
A +IR MG F +I++V+K AAR+GQ F+SSR+ V S
Sbjct: 282 AENIRRWMGHFEDIRSVSKCAARMGQLFSSSRQTFEVSSYDVEVIPDIEVTTDGTKYIFS 341
Query: 419 -NIGKISAELAETVAKKCGY-AIYTPSAFQIRYGGYK------------VTLRNNMFKYK 464
IGKIS A VAK G + PSAFQIRYGGYK ++LR +M K++
Sbjct: 342 DGIGKISTRFARQVAKLIGLDPAHPPSAFQIRYGGYKGVITIDPTSFFNLSLRPSMKKFE 401
Query: 465 SESTSLDILANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTD 509
S+ST L+I SK Q RE ++ L D FE Q++ + D +LT+
Sbjct: 402 SKSTMLNITNWSKSQPCYVNREIISLLSTLGIKDEAFESMQQDDMHESDGMLTN 455
>gi|353235420|emb|CCA67433.1| related to RNA-directed RNA polymerase (RdRP) [Piriformospora
indica DSM 11827]
Length = 1169
Score = 186 bits (471), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 164/611 (26%), Positives = 271/611 (44%), Gaps = 109/611 (17%)
Query: 262 DGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLS 321
+ G+ ++ VTPS V GP +NRV+R Y NF+R+ F +ED L
Sbjct: 377 ESGVFECHRATVTPSSVVLTGPLPDETNRVIRKYRAYGHNFIRVDFTEEDRLHLRK---- 432
Query: 322 PQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMF-----ASRP 376
N + + +R+ ++NG+ + +KFE LA+S+S +E+ +W +
Sbjct: 433 ----EKNVDLTAILDDRIGEFMKNGLSVAGRKFELLAYSSSALKEHAVWFMTPFTTSDGQ 488
Query: 377 ELTAADIRERMGDF-REIKNVTKYAARLGQSFASSREALHV------------------- 416
+T+ IR +GDF + I +Y ARL Q+F+S+ ++ V
Sbjct: 489 YITSESIRRSLGDFSKVIYCPARYGARLSQAFSSTEPSITVRVDEIRFIPDKESDYGSLY 548
Query: 417 DSNIGKISAELA--------ETVAKKCGYAIYTPSAFQIRYGGYK-------------VT 455
+G IS + A E+ +K+ + PSAFQIR GG K +
Sbjct: 549 TDGVGTISPQAAKEIWHKYTESRSKRNRRRLKRPSAFQIRLGGLKGMLCVDNRLRGRVIC 608
Query: 456 LRNNMFKYKSESTSLDILANSKYQR--------------EGVARLRLDNVFERKQREVVA 501
+R +M K+ S+ ++I + R E + ++ L+ + + V
Sbjct: 609 VRESMNKFHSDDREVEI--ARVFDRPMAMFLNRPLIMLLETLKKVPLEPFMALQTKAVEE 666
Query: 502 RLDAI--LTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAE-------PFLSMMPQTF 552
DA+ ++++ E L ++ T+V +L G + PFL M Q
Sbjct: 667 TRDAMKSFDAAARILERYGLGTAFRLTSVFLQLHKLGVSLALKDRSQGLLPFLGRMLQFV 726
Query: 553 HASNLLELRTRARIFIQNGQAMMGCLDE----------------KGTLEYGQGLMVVAKK 596
L +L+ +ARI + N ++G DE G +Y +G +++++
Sbjct: 727 ENHILRDLKYKARIPVPNAWTLVGVSDEYDYLGENEIYARVRTIDGEEQYLEGPVMISRS 786
Query: 597 PCLHPGDMRVLRAVDVPA------LHHMVDCVLFPAKGERPHTNEC-SGSDQDGEIYFVC 649
P +HPGD R++ A+ P+ L + +CV+FP KG P +C +G D DG++Y +
Sbjct: 787 PTVHPGDARMVWAIGKPSRGAPPGLEELTNCVVFPCKGH-PSLPQCLAGGDLDGDLYCLV 845
Query: 650 WDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSE 709
D QFQ Y P L R TI+DV ++ +YI ND LGII ++ A
Sbjct: 846 LDPQLHFRWQFQHGDYDPPQLVTLDRPSTIKDVAQFVVNYIKNDLLGIISMQCMLIADVR 905
Query: 710 PDKAMSNRCPDLVKLSSIVGDFSKTGV---AATIP---SRLRVKIYPDFMEKQDKTWYES 763
D C L KL SI D+ KTG ++ IP SR R Y + + + Y+S
Sbjct: 906 KDCLADPDCVKLAKLHSIAVDYPKTGRHVESSEIPWLDSRRRPDWYANELHNNNPDLYQS 965
Query: 764 QHIVGNLYREV 774
Q +G+L+R +
Sbjct: 966 QRHIGHLFRAI 976
>gi|402218300|gb|EJT98377.1| RdRP-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 908
Score = 186 bits (471), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 172/637 (27%), Positives = 274/637 (43%), Gaps = 114/637 (17%)
Query: 241 REQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEID 300
R QY GQ SP D +I +VTP+ ++ GP + SN V+R+YP+
Sbjct: 110 RAQYTALTMHGQSEASPIPICDI-MIRACAAIVTPTCIHLEGPYLDQSNSVLRAYPEHQH 168
Query: 301 NFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFS 360
FLRLSF ED LY+ + + R + R+ + LR G+ + + FE LA+S
Sbjct: 169 YFLRLSFASEDHLPLYN--------DRDVDSRLFVGYRIGTILREGVTLAGRHFEFLAYS 220
Query: 361 NSQERENTLWMFA--SRPEL---TAADIRERMGDFREI-KNVTKYAARLGQSFASSREA- 413
S R++++WM A P L TA +R+R+GDF + K +Y ARL Q+F ++ +
Sbjct: 221 LSALRQHSVWMVAPFDHPVLGLMTANRVRDRLGDFSRVSKCPARYGARLAQAFTATEPSI 280
Query: 414 -------------------LHVDSNIGKISAELAETVAKKC--------GYAIYTPSAFQ 446
L +G +S EL E K+ + + FQ
Sbjct: 281 VLKPENIVEIPDKINKANKLIFTDGVGGMSLELLEGTWKRLVENRPHLRTKIDFPATVFQ 340
Query: 447 IRYGGYK-------------VTLRNNMFKYKS-ESTSLDI----------LANSKYQREG 482
R GG K + +R +M K+ + +S L+I N +
Sbjct: 341 FRLGGNKGLLSLNPLLPGLVMQVRPSMNKFDAPDSLGLEIAKSFERPRPFFLNRPFIMLL 400
Query: 483 VARLRLDNVFERKQREVVARLD---AILTDSSKVQEALELMSSAENTNVLKELLNC---- 535
+R +VF QR V ++ + L +S + E L + +L+ + +
Sbjct: 401 ESRGVHADVFLTLQRNAVKAVEDSKSSLIRASIMTETYGLGGTFWIRLILRNIHDILGLD 460
Query: 536 -----GYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL------ 584
G +PFL + A+ L E+R RARI + N ++G DE L
Sbjct: 461 FEAGQGLTTFYDPFLKHIIDVGKANALREIRFRARIPVPNSWTLIGVADEHDVLGKNEIY 520
Query: 585 -----------EYGQGLMVVAKKPCLHPGDMRVLRAV-----DVPAL---HHMVDCVLFP 625
+ +G +V K P L PGD + + + D P + + + +CV+F
Sbjct: 521 ACIHKPGDPEPHWIEGPAIVTKSPSLGPGDAQFVTGIGRPPPDCPFMLGPYPLKNCVVFS 580
Query: 626 AKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEY 685
+G RP + G D DG+ + V P P YT A L RD T+ DV ++
Sbjct: 581 CRGVRPIPSMLGGGDLDGDEFNVVQYSSLFPQYPADPDDYTAAERAELDRDCTMNDVIDF 640
Query: 686 FADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAA---TIPS 742
DY+ ND +G + H++ A PD + C L +L ++ DF+KTG IPS
Sbjct: 641 IIDYVNNDLVGRLATEHLILADQHPDGVKYSNCHQLAQLYALALDFAKTGTPIDQDQIPS 700
Query: 743 RLRVKIYPDFME------KQDKTWYESQHIVGNLYRE 773
L + PD+++ KQ +Y+SQ +G+++RE
Sbjct: 701 LLN-DMKPDYLQREQQVGKQSTKFYQSQRALGHMFRE 736
>gi|340517754|gb|EGR47997.1| predicted protein [Trichoderma reesei QM6a]
Length = 1250
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 153/568 (26%), Positives = 251/568 (44%), Gaps = 92/568 (16%)
Query: 267 YVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISS 326
+V K +VTP+++ GP+ +NRV+R +P D LR+ F DED L L P + +
Sbjct: 431 WVLKAVVTPTRIMLQGPDAENNNRVLRMFPHHSDYLLRVIFSDEDGQDL---ALFPSVDN 487
Query: 327 TNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWM---FASRPEL-TAAD 382
+ I+ R L++GI + +K+E L FS+S R ++ W F +L
Sbjct: 488 SA------IFGRYRKVLKDGIQVAGRKYEFLGFSHSSLRSHSAWFCAPFIDNMQLHNNES 541
Query: 383 IRERMGDFREIKNVTKYAARLGQSFASSREALHV-DSNIG------KISAELAETVAKKC 435
I +GDF EI+ K AAR+GQ+F+ + A+ + IG +A+ + + C
Sbjct: 542 IINSLGDFSEIRIPAKCAARIGQAFSETPYAVDILKCGIGIKYIPDVKTADGSRVFSDGC 601
Query: 436 GYAIY--------------TPSAFQIRYGGYKVTL--------------RNNMFKYKS-E 466
G + TP+ Q+R GG K L + +M K+ S +
Sbjct: 602 GTISWDAIEEIWEHLPMTSTPTCLQVRLGGIKGMLSLDSRLKGKVICIRKESMMKFSSSD 661
Query: 467 STSLDILANSKYQREGVARLRLDNVFE-------------RKQREVVARLDAILTDSSKV 513
T L I + V ++ + E K +V+ + A ++S
Sbjct: 662 QTMLGICDTASKPLRFVLNRQIIKILEDMGTNAEWFIDQQNKALDVLRNVTATAVNTSTF 721
Query: 514 QEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQA 573
E + ++ ++K L G + F+ + L L+ +ARI + G
Sbjct: 722 LEYQLVGTTVGLPKLIKYLSKIGVDYRRDNFMKTVVDHTILEELRLLKHKARIPVDQGVT 781
Query: 574 MMGCLDEKGTLEYGQ----------------------GLMVVAKKPCLHPGDMRVLRAVD 611
+ G +DE G LE G+ GL+++ + P LHPGD++ +
Sbjct: 782 LFGIMDETGFLEEGEIYVTFDQQYDKVQGRVKHSLKDGLVLITRSPALHPGDIQPAQMRT 841
Query: 612 VP---ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPA 668
P LH + +CV+F KG R ++ SG D DG++Y + WD IP F +Y
Sbjct: 842 PPEGHPLHDLKNCVVFSQKGTRDLPSQLSGGDLDGDLYNIFWDPRVIPKQFFTAASYPRV 901
Query: 669 PEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIV 728
L R VT +D+ ++F ++ D LG+I N H V A ++ + + C L +L S
Sbjct: 902 IPPPLDRAVTRDDIADFFVTFMETDILGMIANRHQVSADAKEEGTLHQECIKLAELHSTA 961
Query: 729 GDFSKTGVAATI---PSRLRVKIYPDFM 753
D+SKTG+ T+ P R++ PDFM
Sbjct: 962 VDYSKTGIPVTVQQLPKAPRMR--PDFM 987
>gi|350629963|gb|EHA18336.1| hypothetical protein ASPNIDRAFT_176277 [Aspergillus niger ATCC
1015]
Length = 1152
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 150/614 (24%), Positives = 265/614 (43%), Gaps = 112/614 (18%)
Query: 265 LIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQI 324
L ++K+++TP++V GPE+ NR++R +P+ D F+R+ F DE+ L+ + +I
Sbjct: 395 LTPIHKVMITPTRVTLHGPELEPRNRILRRFPNHHDYFIRVQFCDENGQDLH---FNSRI 451
Query: 325 SSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTL---WMFASRPELTAA 381
+ ++ R L +GI I + + L +S+S R + ++ S T
Sbjct: 452 HYDD------VFSRFKHVLTHGIQIAGRTYSFLGWSHSSLRSHAFSSPFVDESGQFQTHF 505
Query: 382 DIRERMGDFREIKNVTKYAARLGQSFASSREALHVD----------------------SN 419
I + +GDF +I++ + AAR+GQ+F + A+ +
Sbjct: 506 SIIKALGDFSKIQSPARCAARIGQAFTDTPYAISLSEYDIEVSEMADVTSKDGKRVFSDG 565
Query: 420 IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK-------------VTLRNNMFKYKSE 466
IG +S +A+++ P+ FQ+R GG K V +R +M K++ +
Sbjct: 566 IGTLSWNVAKSIWHHIPEKKGFPTCFQVRLGGAKGMLAVDGRLSGSQVKVRPSMIKFEGD 625
Query: 467 STSLDILANSK------YQREGVARLR----LDNVFERKQREVVARLDAILTDSSKVQEA 516
L+I A + R+ + L D+ F Q + +L ++ + +
Sbjct: 626 MKDLEICAMAAKPMVLVLNRQMIKILEDMGTPDDWFLTLQEAALTKLRSVTASAHNSEVF 685
Query: 517 LELMSSAENTNVLKELLNCGYKP---DAEPFLSMMPQTFHASNLLELRTRARIFIQNGQA 573
++ + + + + +C + EPF+ + + L L+ +ARI + G
Sbjct: 686 IKRQAVGDTIGLYRLFRHCHQRDLDYRKEPFIRSVVEAVVLKELRLLKHKARIPVFKGIT 745
Query: 574 MMGCLDEKGTLEYGQ------------------GLMVVAKKPCLHPGDMRVLRAVDVPAL 615
+ G +DE G LE Q G+++V + P LH GD++ + V P
Sbjct: 746 LFGVMDETGLLEADQVYVTYETIEGRHAPPPNAGMVLVTRSPALHDGDIQFAQNVIPPDN 805
Query: 616 H---HMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKI 672
H + +C++F +KG R ++ SG D DG+I+ V WD D P F P Y
Sbjct: 806 HPLAELTNCIVFSSKGYRDLPSQLSGGDLDGDIFNVIWDTDAYPVRTFAPADYPRVSPVD 865
Query: 673 LARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFS 732
+ R V +D+ ++F D++ D LG+I H++ A E + C L +L S DFS
Sbjct: 866 IGRPVERDDMAQFFLDFMKTDHLGVIATRHMIMADQEAEGTSHPVCRKLAQLHSTAVDFS 925
Query: 733 KTGVAATIPSRLRVKIY-PDFM---------EKQD---------------------KTWY 761
KTG+ + + K + PDFM K D +Y
Sbjct: 926 KTGIPVQMSEIPKGKPFRPDFMAPGPVARIHNKSDIELEEYVIQAAYDEDDDMEPFHKYY 985
Query: 762 ESQHIVGNLYREVN 775
S+ I+G LYR V+
Sbjct: 986 RSEKILGKLYRGVD 999
>gi|346973013|gb|EGY16465.1| RNA-dependent RNA polymerase [Verticillium dahliae VdLs.17]
Length = 1310
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 150/566 (26%), Positives = 247/566 (43%), Gaps = 91/566 (16%)
Query: 267 YVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISS 326
+V K VTP+++ GP NR++R +PD + F+R+ F DE+ ++ LS ++S+
Sbjct: 431 WVFKANVTPTRITLHGPAYEPMNRILRKFPDHAEYFMRVQFCDENGDDIF---LSAKVSN 487
Query: 327 TNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTA-----A 381
+ IY R L++GI I + + L FS+S R ++ W A + T
Sbjct: 488 DH------IYNRFRRVLQSGIQIAGRVYSFLGFSHSSLRSHSAWFSAPFVDKTGQLQSYV 541
Query: 382 DIRERMGDFREIKNVTKYAARLGQSFASSREALHV--------------------DSNIG 421
+I + +GDF I+ K AAR+GQ+F+ + ++ + +G
Sbjct: 542 NIIKSLGDFEHIRIPAKCAARIGQAFSETTSSVSLVDHGIVCQFIPDVKYGNRVFSDGVG 601
Query: 422 KISAELAETVAKKCGYAIYTPSAFQIRYGGYKVTL--------------RNNMFKYKSES 467
IS + ET+ P+ QIR+GG K L + +M K+ S
Sbjct: 602 TISRDALETIWPHLPRMESLPTCLQIRWGGVKGMLSLDSRLPGRVMNIRQESMLKFPS-- 659
Query: 468 TSLDIL----ANSKYQREGVARLRL---------DNVFERKQREVVARLDAILTDSSKVQ 514
T LD L A S+ R + R + D F Q+ + RL A+ D+
Sbjct: 660 TDLDNLGICGAASRPLRMVLNRQMIKILEDMGVRDEWFFSLQKRELERLRAVTADAWNTG 719
Query: 515 EALELM---SSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNG 571
L+L S+ + +K L G + FL + L L+ +ARI + G
Sbjct: 720 AFLQLQGIGSAFYLSTFIKTLDKYGINYRRDDFLRCTVEAVVLRELRLLKHKARIPVPQG 779
Query: 572 QAMMGCLDEKGTLEYGQ---------------------GLMVVAKKPCLHPGDMRVLRAV 610
+ G +DE G L G+ G ++V + P LHPGD++ +R
Sbjct: 780 VTLFGIMDETGFLSEGEVYVCYDSRYNGSLPIDSTLSDGNILVTRSPALHPGDIQWVRMR 839
Query: 611 DVPALHHMVD---CVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTP 667
P H + D C++F GER ++ SG D DG++Y + WD P F P Y
Sbjct: 840 TPPVGHPLRDLRNCIVFSQHGERDLPSQLSGGDLDGDLYNIIWDRQARPKRFFAPADYPR 899
Query: 668 APEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSI 727
L R VT +D+ +F +++ +D LG+I H++ A + + + C ++ S
Sbjct: 900 ITPTELNRQVTRDDMAGFFVNFMKSDVLGMIATKHLILADQKEEGTLDADCIIFAEMHST 959
Query: 728 VGDFSKTGVAATIPSRLRV-KIYPDF 752
DFSKTG+ + + + +I PD
Sbjct: 960 AVDFSKTGIPVDMQAMPKTNRIRPDL 985
>gi|322712330|gb|EFZ03903.1| rna-dependent rna polymerase [Metarhizium anisopliae ARSEF 23]
Length = 1114
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 182/709 (25%), Positives = 300/709 (42%), Gaps = 151/709 (21%)
Query: 264 GLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQ 323
G V K LVTP+++ GP++ NRV+R +P + D+FLR++F DED L
Sbjct: 302 GRALVLKALVTPTRIVLRGPDLETKNRVLRMFPGKSDHFLRVTFGDEDGEDL-------- 353
Query: 324 ISSTNGERRTR--IYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWM---FASRPEL 378
+ G+R I+E L G+ + ++FE LAFS+S R ++ W F + L
Sbjct: 354 ---SYGDRTCNDDIFEHYRRILLRGLTVAGRRFEFLAFSHSSLRSHSAWFCSPFVGQ-SL 409
Query: 379 TAADIR---ERMGDFREIKNVTKYAARLGQSFASSREALHVDS----------------- 418
T D R + +G F+ I+ K AAR+GQ+F+ + AL +
Sbjct: 410 TVQDCRSIVKSLGVFQNIRIPAKCAARIGQAFSETPIALSLSQRGIRLQYIDDVKNSAGT 469
Query: 419 -----NIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK-------------VTLRN-N 459
+G IS + + V + P+ QIR G K + +R+ +
Sbjct: 470 RVFSDGVGTISIDALQEVWDCLPERLGRPTCIQIRIAGVKGMLSLDSQLRGKYICIRSES 529
Query: 460 MFKYKSESTSLDILA----NSKYQREGVARLRLD---------NVFERKQREVVARLDAI 506
M K+KS+ LD+L S+ R + R + N F Q + + ++
Sbjct: 530 MMKFKSQD--LDVLGICDVGSRPLRFTLNRQIVKILEDMGIHHNWFLAWQDKAIRNFLSV 587
Query: 507 LTDSSKVQEAL---ELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTR 563
+ + + L E+ +S ++++L G + FL + + L L+ +
Sbjct: 588 ASSTRHTRAFLRQYEVGTSLRLPELIEKLEENGIDYREDDFLRSVVGQAVLAELRFLKYK 647
Query: 564 ARIFIQNGQAMMGCLDEKGTLEYGQ----------------------GLMVVAKKPCLHP 601
ARI + + G +DE G L+ GQ G +V + P LHP
Sbjct: 648 ARIPVSKAVTLFGVMDETGFLQEGQIYVTYDVADHLGATGIEAAPAKGRALVTRSPALHP 707
Query: 602 GDMRVLRAVDVP---ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPL 658
GD++ + V P AL + +C++F ++G R + SG D DG++Y V WD D IP
Sbjct: 708 GDIQYVEMVTPPFGHALLELRNCIVFSSQGSRDLPSMLSGGDLDGDLYSVIWDPDAIPTR 767
Query: 659 QFQPTAY---TPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMS 715
+P Y +P P K R V ED+ +F D++ ND LGII H +YA +P +
Sbjct: 768 NLKPAEYPRISPKPNK---RQVRQEDMANFFIDFMKNDVLGIIATRHQMYADLKPAGTLD 824
Query: 716 NRCPDLVKLSSIVGDFSKTGV---AATIPSRLRVKIYPDFME---------KQDKTW--- 760
C L ++ S D+SK+GV A IP + + DF+ D ++
Sbjct: 825 PECIRLAEMHSAAVDYSKSGVPVEAHCIPKVPQAR--ADFLVPAPTLALHLSNDASYFER 882
Query: 761 -------------------YESQHIVGNLYREVN--------GIAPSTTTIKSFAKEGAM 793
Y+S I+G L+RE++ A TT +G +
Sbjct: 883 LTACISESETSPAQPGFATYQSNKILGRLFREIDEHRIWKESTQAEVTTRTSGGIWDGLL 942
Query: 794 QFYDTDME-VNGFKEVAMQFDGFK-YRTEYDNKLGNLMDYYGIKTEAEM 840
+ ++D+ VN + + K RTEYD L + + + ++
Sbjct: 943 KHVESDLSAVNIILDWETKLATAKNLRTEYDMALAETLRQFSVNPRGQV 991
>gi|327295881|ref|XP_003232635.1| hypothetical protein TERG_06627 [Trichophyton rubrum CBS 118892]
gi|326464946|gb|EGD90399.1| hypothetical protein TERG_06627 [Trichophyton rubrum CBS 118892]
Length = 1207
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 174/690 (25%), Positives = 280/690 (40%), Gaps = 140/690 (20%)
Query: 266 IYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQIS 325
+ V++ VTP+ +Y GP NR++R Y D ID F+R+ F+DE P
Sbjct: 416 VLVHRATVTPAGIYLSGPYAETKNRILRKYLDNIDYFIRVEFLDE--------TGDPVFF 467
Query: 326 STNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE-----LTA 380
+ ++R ++ GI I + FE L FS+S R T W A L A
Sbjct: 468 DPHANLEPIFHQRFAGVMKRGIEIAGRGFEFLGFSHSSLRAQTCWFAAPFTTADGDYLNA 527
Query: 381 ADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSNI-----------GKISAELAE 429
I +G F I++ +K AAR+GQ+F+ + ++ V + +I ++
Sbjct: 528 RTIIGNIGYFDHIRSPSKQAARIGQAFSDTLTSISVSKEVVWMRAPDVKRNDRIFSDGVG 587
Query: 430 TVAKKCGYAIYT---------PSAFQIRYGGYK-------------VTLRNNMFK----- 462
+++ Y I+ P+ FQIR G K + LR +M K
Sbjct: 588 VMSRDLMYRIWNEYALREKVKPTVFQIRIAGAKGMVSLDTRRKGEFLMLRESMVKFPTDD 647
Query: 463 -YKSESTSLDILANSKYQREGVARLRLD-----NVFERKQREVVARLDAILTDSSKVQEA 516
Y E I A Y + ++ D F + Q++ + L + + + +
Sbjct: 648 LYNIEICGAGIRALPFYLNNQIIKILEDLGVPFEAFHQLQQDEINFLYSTFNSTERAAKF 707
Query: 517 LE---LMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQA 573
LE + S + L G + +PFL + + L +L+ RARI + N
Sbjct: 708 LEDSPVPRSLRLPWLFLVLKGLGIRYTRDPFLKRVMELTTLLRLRDLKYRARIRVPNAVT 767
Query: 574 MMGCLDEKGTLEYGQGL-----------------MVVAKKPCLHPGDMRVLRAVDVPA-- 614
+ G +DE G L+ + +V+ + P LHPGD++V+ AVDVPA
Sbjct: 768 LYGIMDETGYLKENEIYCVYLGENGRREILVRDNVVITRSPALHPGDIQVVNAVDVPANS 827
Query: 615 -LHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKIL 673
L + +CV F G+R + SG D DG++Y + +D IP P Y K L
Sbjct: 828 PLRKLHNCVAFSQHGDRDLPSMLSGGDLDGDLYNIIYDTRLIPRKTIPPANYPRVEAKEL 887
Query: 674 ARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSK 733
R V ED+ ++F ++ D LG I H A + C L L S+ D+SK
Sbjct: 888 DRKVETEDIIDFFVTFMQQDQLGRIATTHQTIADQSEFGTLDQACLKLAHLHSVAVDYSK 947
Query: 734 TGVAA---TIPSRLRVKIYPDFMEKQDK-------------------------------- 758
+G+A +IP RV+ PDFM + +
Sbjct: 948 SGIAVDVLSIPRAPRVR--PDFMAQSPRFRVADSIESIIGEKKSTMQEDDDEDEDDSDRR 1005
Query: 759 --TWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKE----VAMQF 812
+Y+S +I+G LYR ++ + + GA+ DT+ N + V +
Sbjct: 1006 RIRYYKSNNILGRLYRSID----ERSFLCQLRDAGAV---DTNTNTNVLRSIWNYVLSEV 1058
Query: 813 DGFKY----------RTEYDNKLGNLMDYY 832
DGF + R Y+++L LM Y
Sbjct: 1059 DGFLWTHLTGIFHDTRDIYEDELRELMRKY 1088
>gi|302660624|ref|XP_003021989.1| hypothetical protein TRV_03883 [Trichophyton verrucosum HKI 0517]
gi|291185913|gb|EFE41371.1| hypothetical protein TRV_03883 [Trichophyton verrucosum HKI 0517]
Length = 1233
Score = 183 bits (465), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 155/563 (27%), Positives = 247/563 (43%), Gaps = 85/563 (15%)
Query: 266 IYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQIS 325
+ V++ VTP+ +Y GP NR++R Y D ID F+R+ F+DE ++ P
Sbjct: 416 VLVHRATVTPAGIYLSGPYAETKNRILRKYLDNIDYFIRVEFLDETGDPVF---FDP--- 469
Query: 326 STNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWM-----FASRPELTA 380
S N E+ ++R ++ GI I ++FE L FS+S R T W A+ L A
Sbjct: 470 SANLEQI--FHQRFAGVMKRGIEIAGREFEFLGFSHSSLRAQTCWFAAPFTTANGDYLNA 527
Query: 381 ADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSNI-----------GKISAELAE 429
I +G F I++ +K AAR+GQ+F+ + ++ V + +I ++
Sbjct: 528 RTIIGNIGYFDHIRSPSKQAARIGQAFSDTLTSISVSKEVVWMRAPDVKRNDRIFSDGVG 587
Query: 430 TVAKKCGYAIYT---------PSAFQIRYGGYK-------------VTLRNNMFK----- 462
+++ Y I+ P+ FQIR G K + LR +M K
Sbjct: 588 VISRDLMYRIWNEYALREKVKPTVFQIRIAGAKGMVSLDTRRKGEFLMLRESMVKFPTDD 647
Query: 463 -YKSESTSLDILANSKYQREGVARLRLD-----NVFERKQREVVARLDAILTDSSKVQEA 516
Y E I A Y + ++ D F + Q++ + L + + + +
Sbjct: 648 LYNIEICGAGIRALPFYLNNQIIKILEDLEVPFEAFHQLQQDEINFLYSTFNSTERAAKF 707
Query: 517 LE---LMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQA 573
LE + S + L G + +PFL + + L +L+ RARI + N
Sbjct: 708 LEDSPVPKSLRLPWLFLVLKGLGIRYTQDPFLKRVMELTTLLRLRDLKYRARIRVPNAVT 767
Query: 574 MMGCLDEKGTLEY---------GQGL--------MVVAKKPCLHPGDMRVLRAVDVPA-- 614
+ G +DE G L+ G G +V+ + P LHPGD++V+ AVDVPA
Sbjct: 768 LYGIMDETGYLKENEIYCAYLGGDGRREILVRDNVVITRSPALHPGDIQVVNAVDVPANS 827
Query: 615 -LHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKIL 673
L + +CV F G+R + SG D DG++Y + +D +P P Y K L
Sbjct: 828 PLRKLHNCVAFSQHGDRDLPSMLSGGDLDGDLYNIIYDTRLVPRKTIPPADYPRVEAKEL 887
Query: 674 ARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSK 733
R V ED+ ++F ++ D LG I H A + C L L S+ D+SK
Sbjct: 888 DRKVETEDIIDFFVTFMQQDQLGRIATTHQTIADQSEFGTLDQACLKLAHLHSVAVDYSK 947
Query: 734 TGVAA---TIPSRLRVKIYPDFM 753
+G+ +IP RV+ PDFM
Sbjct: 948 SGIPVNVFSIPRAPRVR--PDFM 968
>gi|406862357|gb|EKD15408.1| RNA-dependent RNA polymerase [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1193
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 165/619 (26%), Positives = 275/619 (44%), Gaps = 128/619 (20%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
++++ +TPS Y GPE NRV+R YP D+F+R+SF DED + +P++S+
Sbjct: 418 IHRVTITPSGFYLGGPEYEPMNRVLRQYPKHHDSFIRVSFADEDGEPIR---FNPKVSNE 474
Query: 328 NGERRTRIYERVLST-LRNGIVIGDKKFETLAFSNSQERENTLWM---FASRPELTAADI 383
+I++ T L G + +KF+ L FS+S R + W FA L +
Sbjct: 475 ------KIFQDRFGTFLSTGFHVAGRKFDFLGFSHSSLRAQSCWFMSPFAHNGSLMYDRV 528
Query: 384 R-ERMGDFREIKNVTKYAARLGQSFASSREALHVDSNIGKISAEL---AETVAKKCG--- 436
+++GDF +I+ K AAR+GQ+F+ + A+ ++ + ++ ++ + + CG
Sbjct: 529 LIQQLGDFTKIRCPAKCAARIGQAFSETPIAVPLEPGLVQLLPDVERGSRVFSDGCGKIS 588
Query: 437 -------YAI------YTPSAFQIRYGGYK-------------VTLRNNMFKYKSESTSL 470
+A+ + P+ FQIRY G K V +R +M K+ S S
Sbjct: 589 RSIMHRIWAVLPDMRKHQPTCFQIRYQGAKGMLSLDDTLEGDQVLMRPSMIKFDG-SPSF 647
Query: 471 DI-LANSKYQ-------REGVARLR----LDNVFERKQREVVARLDAILTDSSKVQEALE 518
D+ L N+ Y+ R+ + + D F Q + + RL T +S + L
Sbjct: 648 DLELCNASYKSLPMYLNRQLIKIMEDIGVPDQWFLDLQSQEIERLRKATTSASNAAKFLS 707
Query: 519 LMSSAENTNV---LKELLNCGYKPDAEPFLSMMPQTFHASNLLELRT---RARIFIQNGQ 572
S + ++ +++L + + FL S +LE++T RAR + G
Sbjct: 708 SHSIGDRVHLSWLIRKLAQMSIEFRTDRFLC---DVLELSVMLEVKTLKHRARYPVPEGL 764
Query: 573 AMMGCLDEKGTLEYG-----------------QGLMVVAKKPCLHPGDMRVLRAVDVP-- 613
+ G +DE G LE G Q ++V + P LHPGD++ ++AV+VP
Sbjct: 765 TLYGIMDETGILEEGEIYCTYQSQKGKRMVVIQDRVLVTRSPALHPGDVQPVKAVNVPRD 824
Query: 614 -ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQ----PTAYTPA 668
L + +C+ F KG+R + SG D DG++Y + WD P Q + P Y
Sbjct: 825 SPLSKLRNCICFSQKGDRDLPSMLSGGDLDGDLYNIIWD----PGCQIRFKSFPADYPRQ 880
Query: 669 PEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIV 728
+ R V+ ED+ ++F ++ D LG I +H + A + C L ++ S
Sbjct: 881 DPIDIGRQVSREDMTKFFVQFMETDQLGRIAMSHQILADQKDMGTFDEDCRILAEMHSTA 940
Query: 729 GDFSKTGVAATIPSRLR-VKIYPDFM--------EKQDKT-------------------- 759
DFSKTGV + + I PDFM EK++
Sbjct: 941 VDFSKTGVPVDMKKMPKFTPIRPDFMSMGNHVRMEKKEGLLLEATTLSTQDDNNDDDDFP 1000
Query: 760 ---WYESQHIVGNLYREVN 775
+YES I+G LYR ++
Sbjct: 1001 AYRYYESDRILGKLYRAID 1019
>gi|145498970|ref|XP_001435471.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124402604|emb|CAK68074.1| unnamed protein product [Paramecium tetraurelia]
Length = 1343
Score = 182 bits (463), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 157/615 (25%), Positives = 281/615 (45%), Gaps = 124/615 (20%)
Query: 265 LIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQI 324
L+Y ++ +TPS + + + +++ ++R + + ++ FLR+ + DE+ + + P I
Sbjct: 497 LVYTRRVSMTPSGILYFNKQPEVTSGILRQHYNIVEYFLRVHYEDENQDMVLNI---PYI 553
Query: 325 SSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA-SRPELTAADI 383
+ +T Y + TL+ ++G + FE +S+S R T W + DI
Sbjct: 554 T------QTYYYNFMFPTLK---ILG-QHFELFTWSSSSLRAGTCWFIDFNGAGKQRTDI 603
Query: 384 RERMGDFREIK--NVTKYAARLGQSFASS-------------REALHVDSN-------IG 421
+ +G+F +K + K AARLGQ+ ++S ++ L VD N IG
Sbjct: 604 IKSIGNFTNLKYDEIAKNAARLGQNLSTSISVDCVGGINILIKDDL-VDKNNKLYTDGIG 662
Query: 422 KISAELAETVAKKCGY-AIYTPSAFQIRYGGYK-------------VTLRNNMFKY---K 464
KIS +L + + +K + SA QIRY G K + LR +M KY K
Sbjct: 663 KISQDLIDQIRQKMRVNSKIKISAIQIRYEGAKGLLVLDESLEQKTIVLRRSMIKYNPAK 722
Query: 465 SESTSLDILANSKYQ-----REGVARLRLDNV----FERKQREVVARLDAILTDSSKVQE 515
+ IL +K++ R+ + L V F+ Q E + +++ + + + +
Sbjct: 723 GYPNKIQILDFNKFRGGYLNRQIIILLLTLQVNEKAFQELQDEYLKKIEDLQMKDASIYK 782
Query: 516 ALELMSSAENTNV------LKELLNCGYKPD--AEPFLSMMPQTFHASNLLELRTRARIF 567
+ E ++ L+ +N G + + + LS + Q LL+LR + I
Sbjct: 783 YFSVDYCDEQIDLPNIMDALRAYINIGMEDNILCQGVLSKLKQ----RGLLQLRKKTSIL 838
Query: 568 IQNGQAMMGCLDEKGTL--------------------EYGQGLMVVAKKPCLHPGDMRVL 607
++ ++G +DE L E QG ++V + PCLHPGD++ L
Sbjct: 839 VEKAARVLGVIDEHNLLQPNEIYCLVQDENNDTQVEPENIQGEVLVTRNPCLHPGDIKKL 898
Query: 608 RAVDVPAL----------HHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPP 657
A+ + +++C++FPA G + +G D DG++YF+CWD+ +PP
Sbjct: 899 NAISTQEILKRNGSKNPYSQLINCLVFPACGNSLPC-QIAGGDLDGDLYFICWDNRLLPP 957
Query: 658 LQFQPTAY-TPAPEKILARDVTIEDVEEYFAD-----------------YIVNDSLGIIC 699
+Q + Y P ++ + + + + F + Y+ +++LG+I
Sbjct: 958 VQAKSMVYDNKKPNQVQYKKIDFRENNQRFHENVDKNFDTKNMFDFLYFYLNSETLGLID 1017
Query: 700 NAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKT 759
N+H+ +A KA C +L +L S DF KTG + +L KI+PD+MEK+
Sbjct: 1018 NSHLAWADKSDKKANDPNCLELAELHSDAVDFVKTGKQVFLDVKLLSKIFPDYMEKEQSV 1077
Query: 760 WYESQHIVGNLYREV 774
YESQ I+G LYR+V
Sbjct: 1078 TYESQTIIGKLYRQV 1092
>gi|295668891|ref|XP_002794994.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226285687|gb|EEH41253.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1142
Score = 182 bits (463), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 160/589 (27%), Positives = 252/589 (42%), Gaps = 99/589 (16%)
Query: 266 IYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQIS 325
I +++ VTP +Y GP++ NRV+R Y +D+FLR+ FVDE P
Sbjct: 416 ILIHRAQVTPCGIYLYGPQLETKNRVLRIYEANVDHFLRVEFVDESG--------DPVRY 467
Query: 326 STNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWM---FASRPEL-TAA 381
+ R L+ GI I +KFE L FS+S R T W F S L A
Sbjct: 468 DSRASVDAIFQSRFKGVLKEGITIAGRKFEFLGFSHSSLRSQTCWFVAPFVSGGTLYNAT 527
Query: 382 DIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSNIGKISAELAETVAKKCGYAIYT 441
I + +G F I + K AAR+GQ+F+ + ++ + ++ + E E + + T
Sbjct: 528 VIIQNLGRFDHIHSPAKQAARIGQTFSDTLTSIPISFDMLSV-GEDVERNGRIFSDGVGT 586
Query: 442 PSAFQIR----------YGGYKVTLRNNMFK---YKSESTSLDILANSKYQREGVARLRL 488
S F I+ GG + L + K + + + IL + ++ +L+
Sbjct: 587 ISPFLIKSMVKFPVPETVGGLNIELCGSGLKALPFFLNAQLIKILEDLGVEQSAFLKLQA 646
Query: 489 DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNV--LKELLNCGYK---PDAEP 543
D + RL A +++ LE A++ + L +L G++ D E
Sbjct: 647 DEI---------ERLRATAPSTAQAARFLEDTHIAKSIGLPWLISILE-GFRLSHTDDE- 695
Query: 544 FLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQGL------------- 590
FL + + L +L+ RARI + N + G +DE G L+ G+
Sbjct: 696 FLRRVMELAVLIKLRDLKYRARIRVPNAVTLFGIMDETGILKEGEIFCVTLSEDGHREVL 755
Query: 591 ----MVVAKKPCLHPGDMRVLRAVDVPA---LHHMVDCVLFPAKGERPHTNECSGSDQDG 643
+VV + P +HPGD++V +AVDVPA L + +C+ F G+R + SG D DG
Sbjct: 756 VRPRVVVTRSPAMHPGDVQVAKAVDVPADSPLRQLHNCIAFSQYGDRDLPSMLSGGDLDG 815
Query: 644 EIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHV 703
++Y V +D IP + P Y EK+L R V +D+ ++F ++ D LG I H
Sbjct: 816 DLYNVIYDETLIPKITVPPAEYPRVEEKVLNRPVVTDDIIDFFVTFMQQDQLGRIATIHQ 875
Query: 704 VYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVA---ATIPSRLRVKIYPDFM------- 753
A +C L +L S DFSK+GV A IP R + PDF
Sbjct: 876 AIADQRDRGTFDEQCLLLAELHSTAVDFSKSGVPVDLARIPKFPRYR--PDFQAHGPRVR 933
Query: 754 -------------------------EKQDKTWYESQHIVGNLYREVNGI 777
E+ +Y+S I+G LYR ++ +
Sbjct: 934 IAESLSLFEEDEETTAQDLHDDEDDERPPTRFYKSYKILGKLYRSIDEV 982
>gi|74830367|emb|CAI39056.1| RNA-dependent RNA polymerase [Paramecium tetraurelia]
Length = 1367
Score = 182 bits (462), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 157/615 (25%), Positives = 281/615 (45%), Gaps = 124/615 (20%)
Query: 265 LIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQI 324
L+Y ++ +TPS + + + +++ ++R + + ++ FLR+ + DE+ + + P I
Sbjct: 521 LVYTRRVSMTPSGILYFNKQPEVTSGILRQHYNIVEYFLRVHYEDENQDMVLNI---PYI 577
Query: 325 SSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA-SRPELTAADI 383
+ +T Y + TL+ ++G + FE +S+S R T W + DI
Sbjct: 578 T------QTYYYNFMFPTLK---ILG-QHFELFTWSSSSLRAGTCWFIDFNGAGKQRTDI 627
Query: 384 RERMGDFREIK--NVTKYAARLGQSFASS-------------REALHVDSN-------IG 421
+ +G+F +K + K AARLGQ+ ++S ++ L VD N IG
Sbjct: 628 IKSIGNFTNLKYDEIAKNAARLGQNLSTSISVDCVGGINILIKDDL-VDKNNKLYTDGIG 686
Query: 422 KISAELAETVAKKCGY-AIYTPSAFQIRYGGYK-------------VTLRNNMFKY---K 464
KIS +L + + +K + SA QIRY G K + LR +M KY K
Sbjct: 687 KISQDLIDQIRQKMRVNSKIKISAIQIRYEGAKGLLVLDESLEQKTIVLRRSMIKYNPAK 746
Query: 465 SESTSLDILANSKYQ-----REGVARLRLDNV----FERKQREVVARLDAILTDSSKVQE 515
+ IL +K++ R+ + L V F+ Q E + +++ + + + +
Sbjct: 747 GYPNKIQILDFNKFRGGYLNRQIIILLLTLQVNEKAFQELQDEYLKKIEDLQMKDASIYK 806
Query: 516 ALELMSSAENTNV------LKELLNCGYKPD--AEPFLSMMPQTFHASNLLELRTRARIF 567
+ E ++ L+ +N G + + + LS + Q LL+LR + I
Sbjct: 807 YFSVDYCDEQIDLPNIMDALRAYINIGMEDNILCQGVLSKLKQ----RGLLQLRKKTSIL 862
Query: 568 IQNGQAMMGCLDEKGTL--------------------EYGQGLMVVAKKPCLHPGDMRVL 607
++ ++G +DE L E QG ++V + PCLHPGD++ L
Sbjct: 863 VEKAARVLGVIDEHNLLQPNEIYCLVQDENNDTQVEPENIQGEVLVTRNPCLHPGDIKKL 922
Query: 608 RAVDVPAL----------HHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPP 657
A+ + +++C++FPA G + +G D DG++YF+CWD+ +PP
Sbjct: 923 NAISTQEILKRNGSKNPYSQLINCLVFPACGNSLPC-QIAGGDLDGDLYFICWDNRLLPP 981
Query: 658 LQFQPTAY-TPAPEKILARDVTIEDVEEYFAD-----------------YIVNDSLGIIC 699
+Q + Y P ++ + + + + F + Y+ +++LG+I
Sbjct: 982 VQAKSMVYDNKKPNQVQYKKIDFRENNQRFHENVDKNFDTKNMFDFLYFYLNSETLGLID 1041
Query: 700 NAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKT 759
N+H+ +A KA C +L +L S DF KTG + +L KI+PD+MEK+
Sbjct: 1042 NSHLAWADKSDKKANDPNCLELAELHSDAVDFVKTGKQVFLDVKLLSKIFPDYMEKEQSV 1101
Query: 760 WYESQHIVGNLYREV 774
YESQ I+G LYR+V
Sbjct: 1102 TYESQTIIGKLYRQV 1116
>gi|296810484|ref|XP_002845580.1| RNA-dependent RNA polymerase [Arthroderma otae CBS 113480]
gi|238842968|gb|EEQ32630.1| RNA-dependent RNA polymerase [Arthroderma otae CBS 113480]
Length = 1152
Score = 182 bits (462), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 177/692 (25%), Positives = 291/692 (42%), Gaps = 129/692 (18%)
Query: 261 LDGGLIYVNKILV-----TPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKL 315
LD L++ N +LV TP +Y GP + NR++R Y D FLR+ F+DE+
Sbjct: 353 LDFNLVHQNNVLVHRAMVTPCGIYLLGPYAEVKNRILRKYLGNTDYFLRVEFLDENG--- 409
Query: 316 YSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA-- 373
P N +ER ++ GI + + F L FS+S R T W A
Sbjct: 410 -----DPVFFDPNANLEKIFHERFSGVMKRGIEVAGRNFNFLGFSHSSLRSQTCWFAAPF 464
Query: 374 SRPE---LTAADIRERMGDFREIKNVTKYAARLGQSFAS-------SREALH-----VDS 418
+ P+ L A I +G F I++ +K AAR+GQ+F+ S+EA+ V+
Sbjct: 465 TTPDGEYLDARTIINSIGHFDHIRSPSKQAARIGQAFSDTLTSISVSKEAVRLRVPDVER 524
Query: 419 NIGKISAELAETVAKKCGYAIYT---------PSAFQIRYGGYK-------------VTL 456
N G+I ++ ++++ Y I+ P+ FQIR G K + L
Sbjct: 525 N-GRIFSDGVGVISRELMYKIWNEYALREKVKPTVFQIRIAGAKGMVSLDTSRQGEFLML 583
Query: 457 RNNMFKYKSEST------SLDILANSKYQREGVARLRLD-----NVFERKQREVVARLDA 505
R +M K+ ++ + I A Y + ++ D F + Q++ + L +
Sbjct: 584 RESMVKFPTDDSYNIEICGAGIKALPFYLNSQIIKILEDLGVPFAAFHQLQQDEILSLYS 643
Query: 506 ILTDSSKVQEALE---LMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRT 562
+ + + LE + S +L L G + +PFL + + L +L+
Sbjct: 644 TFNSTEQAAKFLEDSPVPRSLRLPWLLLVLKGLGLRYTLDPFLHRIMELTTLLKLRDLKY 703
Query: 563 RARIFIQNGQAMMGCLDEKGTLEYGQGL-----------------MVVAKKPCLHPGDMR 605
RARI + N + G +DE G L+ + +VV + P LHPGD++
Sbjct: 704 RARIRVPNAVTLYGIMDETGYLKENEIYCVFLSEDGRREILVRDNVVVTRSPALHPGDVQ 763
Query: 606 VLRAVDVPA---LHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQP 662
V+ AVDVPA L + +CV F G R + SG D DG++Y + +D IP F P
Sbjct: 764 VVNAVDVPANSPLRRLHNCVAFSQHGVRDLPSMLSGGDLDGDLYNIIYDTRLIPQQTFPP 823
Query: 663 TAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLV 722
Y + L R V D+ ++F ++ D LG I H A C L
Sbjct: 824 ADYPLVKTRELNRKVESNDIIDFFVTFMQQDQLGRIATTHQAIADQSSLGTRDETCLKLA 883
Query: 723 KLSSIVGDFSKTGVAATIPSRLRV-KIYPDFM--------------------EKQDKT-- 759
L S+ D+SK+G+ + R +I PDFM + +KT
Sbjct: 884 HLHSVAVDYSKSGIPVNVLDIPRAPRIRPDFMAPSPRILIEDSIEDSIEHIIRETEKTVQ 943
Query: 760 ------------WYESQHIVGNLYREVNGIA-----PSTTTIKSFAKEGAMQ--FYDTDM 800
+Y+S +I+G LYR ++ + T+ + +++ +Q + +
Sbjct: 944 EDDDDNDRPRIRYYKSHNILGRLYRSIDEQSFLRRLRDVGTVNNDSRKSVLQSIWRYVEK 1003
Query: 801 EVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYY 832
EV+GF + + Y+++L LM Y
Sbjct: 1004 EVDGFFWNHLTGICHDIKEIYEDQLRELMRQY 1035
>gi|326484092|gb|EGE08102.1| RNA-dependent RNA polymerase [Trichophyton equinum CBS 127.97]
Length = 1207
Score = 182 bits (462), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 150/561 (26%), Positives = 244/561 (43%), Gaps = 81/561 (14%)
Query: 266 IYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQIS 325
+ V++ VTP+ +Y GP NR++R Y D ID F+R+ F+DE ++ P
Sbjct: 416 VLVHRATVTPAGIYLSGPYAETKNRILRKYLDNIDYFIRVEFLDETGDPVF---FDP--- 469
Query: 326 STNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWM-----FASRPELTA 380
S N E+ ++R ++ G I ++FE L FS+S R T W A+ L A
Sbjct: 470 SANLEQI--FHQRFAGVMKRGFEIAGREFEFLGFSHSSLRAQTCWFAAPFTTANGDHLNA 527
Query: 381 ADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSNI-----------GKISAELAE 429
I +G F I++ +K AAR+GQ+F+ + ++ V + +I ++
Sbjct: 528 RTIIGNIGYFDHIRSPSKQAARIGQAFSDTLTSISVSKEVVWMKAPDVKRNDRIFSDGVG 587
Query: 430 TVAKKCGYAIYT---------PSAFQIRYGGYK-------------VTLRNNMFK----- 462
+++ Y I+ P+ FQIR G K + LR +M K
Sbjct: 588 VISRDLMYRIWNEYALRERVKPTVFQIRIAGAKGMVSLDTRRKGEFLMLRESMVKFPTDD 647
Query: 463 -YKSESTSLDILANSKYQREGVARLRLD-----NVFERKQREVVARLDAILTDSSKVQEA 516
Y E I A Y + ++ D F + Q++ + L + + + +
Sbjct: 648 LYNIEICGAGIRALPFYLNNQIIKILEDLGVPFEAFHQIQQDEINFLYSTFNSTERAAKF 707
Query: 517 LE---LMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQA 573
LE + S + L G + +PFL + + L +L+ RARI + N
Sbjct: 708 LEDSPVPRSLRLPWLFLVLKGLGIRYTQDPFLKRVMELTTLLRLRDLKYRARIRVPNAVT 767
Query: 574 MMGCLDEKGTLEYGQ-----------------GLMVVAKKPCLHPGDMRVLRAVDVP--- 613
+ G +DE G L+ + +V+ + P LHPGD++V+ AVDVP
Sbjct: 768 LYGIMDETGYLKENEIYCVYLGENGRREILVRDKVVITRSPALHPGDIQVVNAVDVPENS 827
Query: 614 ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKIL 673
L + +CV F G+R + SG D DG++Y + +D +P P Y K L
Sbjct: 828 PLRKLHNCVAFSQHGDRDLPSMLSGGDLDGDLYNIIYDTRLVPRKTIPPANYPRVEAKEL 887
Query: 674 ARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSK 733
R V ED+ ++F ++ D LG I H A + C L L S+ D+SK
Sbjct: 888 DRKVETEDIVDFFVTFMQQDQLGRIATTHQTIADQSELGTLDQACLKLAHLHSVAVDYSK 947
Query: 734 TGVAATIPSRLRV-KIYPDFM 753
+G+A + S R ++ PDFM
Sbjct: 948 SGIAVNVLSIPRAPRVRPDFM 968
>gi|169625035|ref|XP_001805922.1| hypothetical protein SNOG_15784 [Phaeosphaeria nodorum SN15]
gi|160705585|gb|EAT76879.2| hypothetical protein SNOG_15784 [Phaeosphaeria nodorum SN15]
Length = 1234
Score = 182 bits (462), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 155/581 (26%), Positives = 257/581 (44%), Gaps = 104/581 (17%)
Query: 265 LIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQI 324
++ +K +TP+ ++ GP+ SNR++R Y D F+R+SF DED ++ P+
Sbjct: 431 VVLTHKATITPTGIFLRGPDADTSNRILRKYSQYTDYFMRVSFTDEDGVSVFH---DPKA 487
Query: 325 SSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFAS----RPELTA 380
S + +YER LR GI + + FE L FS++ R + +W AS + A
Sbjct: 488 S------QHEVYERFRKILREGIHVAGRHFEFLGFSHASLRCHQVWFMASFIFKGLPICA 541
Query: 381 ADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN--------------------I 420
D+ + +GDF + AAR+GQ+F+ + A+ + S
Sbjct: 542 RDVIQNLGDFNGFTCSARCAARIGQAFSDTIFAVQIPSTATILETKEDITRNNRVFSDGC 601
Query: 421 GKISAELAETVAKKCG--YAIYTPSAFQIRYGGYK-------------VTLRNNMFKYKS 465
G +S EL + + +K P+ QIR G K + +R +M K+ +
Sbjct: 602 GTMSLELFQLLWRKLNPQQRRKRPTVLQIRCRGAKGVLSLDSSLVGEELHIRKSMTKFIA 661
Query: 466 ESTSLDILANSKYQREGVARLRLDNVF--------------------ERKQREVVAR--- 502
S D+ S R R+ L++ F RKQ E++ +
Sbjct: 662 GSEWRDLEICSAAYRP--LRVYLNHQFIKILEDLGVPPQNFIKVQNEARKQLELIVKHPL 719
Query: 503 --LDAILTDSSKVQEALELMSSAENTNVLKELLN-CGYKPDAEPFLSMMPQTFHASNLLE 559
D + + ++ + L EL++ G + FL + + S++ +
Sbjct: 720 NAADFLRKHKTNIRTGYSHSADHAKIPRLFELMHYAGLSFQTDQFLCEIVEVAAMSSIRD 779
Query: 560 LRTRARIFIQNGQAMMGCLDEKGTLEYGQ---------------------GLMVVAKKPC 598
L+ RARI +++G + G +DE TL+ G+ +VV + P
Sbjct: 780 LKYRARIPVESGHLLYGIMDETNTLKEGEVYVATEDETPSGRREKNILIGDRVVVTRAPA 839
Query: 599 LHPGDMRVLRAVDVP---ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRI 655
LHPGD++++ AV+VP L + +C++F +G R ++ SG D DG+++ V WD I
Sbjct: 840 LHPGDVQLVSAVNVPDGSPLRSLHNCIVFSQQGARDLPSQLSGGDLDGDLFHVIWDPLLI 899
Query: 656 PPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMS 715
P Y A L R V + D+ ++F ++ ND LG I N H + A +
Sbjct: 900 PKYTVPAADYAAAAPFNLGRPVEVNDIVDFFIGFMQNDKLGQISNMHKIRADKRENGTFD 959
Query: 716 NRCPDLVKLSSIVGDFSKTGVAAT---IPSRLRVKIYPDFM 753
+ C L KL+S DFSK+GV A IP + + I PDFM
Sbjct: 960 SDCILLAKLASDAVDFSKSGVPAKTSDIPRDIDI-IRPDFM 999
>gi|326476492|gb|EGE00502.1| hypothetical protein TESG_07807 [Trichophyton tonsurans CBS 112818]
Length = 1207
Score = 182 bits (461), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 150/561 (26%), Positives = 244/561 (43%), Gaps = 81/561 (14%)
Query: 266 IYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQIS 325
+ V++ VTP+ +Y GP NR++R Y D ID F+R+ F+DE ++ P
Sbjct: 416 VLVHRATVTPAGIYLSGPYAETKNRILRKYLDNIDYFIRVEFLDETGDPVF---FDP--- 469
Query: 326 STNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA-----SRPELTA 380
S N E+ ++R ++ G I ++FE L FS+S R T W A + L A
Sbjct: 470 SANLEQI--FHQRFAGVMKRGFEIAGREFEFLGFSHSSLRAQTCWFAAPFTTSNGDHLNA 527
Query: 381 ADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSNI-----------GKISAELAE 429
I +G F I++ +K AAR+GQ+F+ + ++ V + +I ++
Sbjct: 528 RTIIGNIGYFDHIRSPSKQAARIGQAFSDTLTSISVSKEVVWMKAPDVKRNDRIFSDGVG 587
Query: 430 TVAKKCGYAIYT---------PSAFQIRYGGYK-------------VTLRNNMFK----- 462
+++ Y I+ P+ FQIR G K + LR +M K
Sbjct: 588 VISRDLMYRIWNEYALRERVKPTVFQIRIAGAKGMVSLDTRRKGEFLMLRESMVKFPTDD 647
Query: 463 -YKSESTSLDILANSKYQREGVARLRLD-----NVFERKQREVVARLDAILTDSSKVQEA 516
Y E I A Y + ++ D F + Q++ + L + + + +
Sbjct: 648 LYNIEICGAGIRALPFYLNNQIIKILEDLGVPFEAFHQIQQDEINFLYSAFNSTERAAKF 707
Query: 517 LE---LMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQA 573
LE + S + L G + +PFL + + L +L+ RARI + N
Sbjct: 708 LEDSPVPRSLRLPWLFLVLKGLGIRYTQDPFLKRVMELTTLLRLRDLKYRARIRVPNAVT 767
Query: 574 MMGCLDEKGTLEYGQ-----------------GLMVVAKKPCLHPGDMRVLRAVDVP--- 613
+ G +DE G L+ + +V+ + P LHPGD++V+ AVDVP
Sbjct: 768 LYGIMDETGYLKENEIYCVYLGENGRREILVRDKVVITRSPALHPGDIQVVNAVDVPENS 827
Query: 614 ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKIL 673
L + +CV F G+R + SG D DG++Y + +D +P P Y K L
Sbjct: 828 PLRKLHNCVAFSQHGDRDLPSMLSGGDLDGDLYNIIYDTRLVPRKTIPPANYPRVEAKEL 887
Query: 674 ARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSK 733
R V ED+ ++F ++ D LG I H A + C L L S+ D+SK
Sbjct: 888 DRKVETEDIVDFFVTFMQQDQLGRIATTHQTIADQSELGTLDQACLKLAHLHSVAVDYSK 947
Query: 734 TGVAATIPSRLRV-KIYPDFM 753
+G+A + S R ++ PDFM
Sbjct: 948 SGIAVNVLSIPRAPRVRPDFM 968
>gi|115436872|ref|XP_001217666.1| predicted protein [Aspergillus terreus NIH2624]
gi|114188481|gb|EAU30181.1| predicted protein [Aspergillus terreus NIH2624]
Length = 1039
Score = 182 bits (461), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 163/618 (26%), Positives = 270/618 (43%), Gaps = 123/618 (19%)
Query: 266 IYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQIS 325
+ ++++ V+P+++ F GPE NRV+R +P F+R+ F DE L+ +P+
Sbjct: 386 VLIHRVSVSPARITFHGPEREPQNRVIRKFPRHHAYFIRVQFCDERGSDLF---FNPK-- 440
Query: 326 STNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPEL------- 378
+I++R + L GI I + + L FS+S R +++W S P +
Sbjct: 441 ----HDYEQIFQRFRTVLTLGIQIAGRTYTFLGFSHSSLRSHSVWF--SSPFIDGDGSLQ 494
Query: 379 TAADIRERMGDFREIKNVTKYAARLGQSFA--------------------SSREALHVDS 418
T++ I + +G+F I + + AAR+GQ+F SS E+
Sbjct: 495 TSSSIIKALGNFSGITSPARCAARIGQAFTETPFTLPVQNVVVEYIEDITSSDESRVFSD 554
Query: 419 NIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK-------------VTLRNNMFKYKS 465
IG IS E+ E + K TP+ FQ+R GG K + +R +M K+ +
Sbjct: 555 GIGTISLEVVERIWKGIPQKKGTPTCFQVRLGGAKGMLSLDSRLEGSVIRIRPSMVKFST 614
Query: 466 EST-SLDI--LANSKY----QREGVARLR----LDNVFERKQREVVARLDAILTDSSKVQ 514
+ L I +A+ Y R+ V L D+ F Q + + +L I + + K
Sbjct: 615 DDMRDLGICGMASEPYPLVLNRQIVKILEDIGVPDDWFFGLQNDRLRQLQLISSSADKTA 674
Query: 515 EALELMSSAENTNVLKELLNC-----GYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQ 569
L+ A++ + K C Y+ D PFL + + L L+ ++RI +
Sbjct: 675 TFLKDAKIADSIGLYKLFRWCYWMDLDYRED--PFLRSIVEAMILRELRLLKHKSRIPVP 732
Query: 570 NGQAMMGCLDEKGTLEY------------------GQGLMVVAKKPCLHPGDMRVLRAVD 611
G + G +DE G L+ G G ++V + P L+ GD++V R V
Sbjct: 733 QGMTLYGIIDETGYLKENEVFITFDTISGLYAAPPGPGPVLVTRSPALYDGDIQVARNVV 792
Query: 612 VPALHHMV---DCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPA 668
P H + +C++F +G R ++ SG D DG++Y V WD P Y
Sbjct: 793 PPPDHPLARHKNCIIFSQQGARDLPSQLSGGDLDGDLYHVIWDPIVAKVHTSPPANYARV 852
Query: 669 PEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIV 728
+ R VT +D+ +F +++ D +GII H++ A EP+ ++ C L +L S
Sbjct: 853 VPHDIGRVVTTKDMAYFFVEFMKTDCVGIIATRHMILADQEPEGTHASGCKLLAELHSTA 912
Query: 729 GDFSKTGVA---ATIPSRLRVKIYPDFM---------EKQDKT----------------- 759
D+SK+GV A IPS R + PDFM K T
Sbjct: 913 VDYSKSGVPVDMAKIPSTGRFR--PDFMAPGPLAQVYSKSKITLTELSSHAAYDEDGPSH 970
Query: 760 --WYESQHIVGNLYREVN 775
+Y+S I+G LYR ++
Sbjct: 971 ILYYKSDRILGKLYRAID 988
>gi|403414238|emb|CCM00938.1| predicted protein [Fibroporia radiculosa]
Length = 1215
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 163/613 (26%), Positives = 271/613 (44%), Gaps = 110/613 (17%)
Query: 271 ILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDED-LGKLYSTVLSPQISSTNG 329
++VTP+ +Y GP SNR++R Y D+FLR+SFV+E+ L + L
Sbjct: 420 VVVTPTTMYLEGPFPERSNRIMRMYMANQDSFLRVSFVEENRLMYRFDREL--------- 470
Query: 330 ERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMF-----ASRPELTAADIR 384
+ R + RV L NG+ I + F+ LA+S S +E+ +W R ++ AA I
Sbjct: 471 DARDFVNRRVKHLLLNGLTIAGRHFDFLAYSQSALKEHAVWFVKPFNHTDRRQIDAATII 530
Query: 385 ERMGDF-------REIKNVTKYAARLGQSFASSREALHVDS------------------- 418
+G F R I +YAAR+ Q+F ++ ++ V++
Sbjct: 531 SGLGSFHDLAFDERLIYCPARYAARISQAFTATDSSVSVEAEEVVPIPDIWDATHTYSFT 590
Query: 419 -NIGKISAELAETV------AKKCGYAIYTPSAFQIRYGGYK-------------VTLRN 458
+G IS +LA+ + +K P A+Q+R+ G K V LR
Sbjct: 591 DGVGTISPDLAQAIWDELRAKQKRSRHRTKPRAYQVRFMGSKGMLSVDYRLENRLVCLRE 650
Query: 459 NMFKYKSESTSLDILANSKYQREGVARLRLD------------NVFERKQREVVARL-DA 505
+M K+ + + SL I + + G L + F+ Q V D+
Sbjct: 651 SMIKFDAPN-SLFIEIARAFDKPGRYYLNRPLIMLLEGLGVPYSTFQALQDAAVQNAQDS 709
Query: 506 I--LTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLL-ELRT 562
+ L+ S+++ EA L +S T+ + L G P E F +++L EL+
Sbjct: 710 VESLSSSARLLEAHGLGTSFRLTSTMLSLHRLGLGPLHEDIFWQQMMDFAVNHVLRELKH 769
Query: 563 RARIFIQNGQAMMGCLDEKGTLEYGQ-----------------GLMVVAKKPCLHPGDMR 605
ARI + +G ++G D G L G+ G ++++ P +HPGD++
Sbjct: 770 HARIPVPDGWTLVGVADVHGFLNEGEIFACVHPQDSSVPIYLEGPTLISRSPTIHPGDVQ 829
Query: 606 VLRAVDVPAL------HHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ 659
V+ A+ P + + V+F KG RP + G D DG++Y + P
Sbjct: 830 VVHAIGPPPPGSPFEKEPLPNTVVFSIKGGRPLPSYLGGGDLDGDVYNLTTMPSMRPRRT 889
Query: 660 FQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCP 719
+ P Y PAP+K + T+ DV E+ A+YI++D+LGII ++ A C
Sbjct: 890 YPPARYDPAPKKFVDHPSTMADVAEFVAEYIISDTLGIIAINWLITADQSGLGIFDPDCL 949
Query: 720 DLVKLSSIVGDFSKTGVAATIPS--RLRVKIYPDF-----MEKQDKTWYESQHIVGNLYR 772
L +L S D+ K+G+ + RL+ K PD+ + K+ WYES +G+L+R
Sbjct: 950 KLAQLHSDAVDYPKSGIPVALDQIPRLKRKSKPDWNAPETITKESTNWYESTRAIGHLFR 1009
Query: 773 EVNGIAPSTTTIK 785
+ P+ T+K
Sbjct: 1010 AIE--LPALQTVK 1020
>gi|225678504|gb|EEH16788.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 1262
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 169/652 (25%), Positives = 265/652 (40%), Gaps = 155/652 (23%)
Query: 266 IYVNKIL-----VTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVL 320
I++N IL VTP +Y GP++ NRV+R Y +D+FLR+ FVDE
Sbjct: 411 IHLNNILIHRAQVTPCGIYLYGPQLETKNRVLRIYEANVDHFLRVEFVDESG-------- 462
Query: 321 SPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWM---FASRPE 377
P + R L+ GI I +KFE L FS+S R T W F S
Sbjct: 463 DPIRYDSRASVDAIFQSRFKGVLKEGITIAGRKFEFLGFSHSSLRSQTCWFVAPFVSGGT 522
Query: 378 L-TAADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSNI----------GKISAE 426
L A I + +G F I + K AAR+GQ+F+ + ++ + ++ G++ ++
Sbjct: 523 LYNATVIIQNLGRFDHIHSPAKQAARIGQTFSDTLTSIPISFDMLSVGEDVERNGRVFSD 582
Query: 427 LAETVAKKCGYAIYT---------PSAFQIRYG--------------------------- 450
T++ Y I+ P+ FQIR
Sbjct: 583 GVGTISPSLMYEIWKDHSLRAKVKPTVFQIRVAAPEPLLAGFHAYRGILLTETWFIGAKG 642
Query: 451 ---------GYKVTLRNNMFKYKSEST--------------SLDILANSKY----QREGV 483
G + LR +M K+ T +L N++ + GV
Sbjct: 643 MIALDSTKTGKSLMLRKSMVKFPVPETVGGLNIELCGSGLKALPFFLNAQLIKILEDLGV 702
Query: 484 ARLRLDNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNV--LKELLNCGYK--P 539
+ + F + Q + + RL A +++ LE A++ + L +L G++
Sbjct: 703 EQ----SAFLKLQADEIERLRATAPSTAQAARFLEDTHIAKSIGLPWLISILE-GFRLSH 757
Query: 540 DAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQGL--------- 590
+ FL + + L +L+ RARI + N + G +DE G L+ G+
Sbjct: 758 TNDEFLRRVMELAVLIKLRDLKYRARIRVPNAVTLFGIMDETGILKEGEIFCVTLSEDGH 817
Query: 591 --------MVVAKKPCLHPGDMRVLRAVDVPA---LHHMVDCVLFPAKGERPHTNECSGS 639
+VV + P +HPGD++V RAVDVPA L + +C+ F G+R + SG
Sbjct: 818 REVLVRPRVVVTRSPAMHPGDVQVARAVDVPADSPLRQLHNCIAFSQYGDRDLPSMLSGG 877
Query: 640 DQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIIC 699
D DG++Y V +D IP + P Y EK+L R V +D+ ++F ++ D LG I
Sbjct: 878 DLDGDLYNVIYDETLIPKITVPPAEYPRVEEKVLNRPVVTDDIIDFFVTFMQQDQLGRIA 937
Query: 700 NAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVA---ATIPSRLRVKIYPDFM--- 753
H A +C L +L S DFSK+GV A IP R + PDF
Sbjct: 938 TIHQAIADQRDRGTFDEQCLLLAELHSTAVDFSKSGVPVDLARIPKFPRYR--PDFQAHG 995
Query: 754 ----------------------------EKQDKTWYESQHIVGNLYREVNGI 777
E+ +Y+S I+G LYR ++ +
Sbjct: 996 PRVRIAESLSLHEEDEETTVHDLDDEDDERPPTRFYKSYKILGKLYRSIDEV 1047
>gi|121716158|ref|XP_001275688.1| rna-dependent rna polymerase [Aspergillus clavatus NRRL 1]
gi|119403845|gb|EAW14262.1| rna-dependent rna polymerase [Aspergillus clavatus NRRL 1]
Length = 1203
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 147/613 (23%), Positives = 260/613 (42%), Gaps = 121/613 (19%)
Query: 265 LIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQI 324
L ++K+++TPS++ GPE NR++R +P+ D F+R+ F DE G L+ S ++
Sbjct: 421 LALIHKVMITPSRITLHGPEPEPFNRILRRFPNHHDYFIRVQFCDEQGGDLH---FSSRV 477
Query: 325 SSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIR 384
+ ++ R + L NGI I + + L +S+S R +++W +A I
Sbjct: 478 TYDE------VFSRFKNVLTNGIQIAGRTYYFLGWSHSSLRSHSVWA-------SAVCII 524
Query: 385 ERMGDFREIKNVTKYAARLGQSFASSREALHVDSN----------------------IGK 422
+ +GDF +I + + AAR+GQ+F+ + A+ V+ N +G
Sbjct: 525 KALGDFSKITSPARCAARIGQAFSETPFAIPVEDNTITIEEVPDLASKDGQRFFSDGVGS 584
Query: 423 ISAELAETVAKKCGYAIYTPSAFQIRYGGYK-------------VTLRNNMFKYKSESTS 469
+S + E + P+ FQIR GG K + +R +M K++ E
Sbjct: 585 LSLNVLEMIWSNIPPKKGKPTGFQIRLGGAKGMIAIDSRLTGSVIRIRPSMIKFQGEMRD 644
Query: 470 LDILANSKYQREGVARLRLDNVFE----------RKQREVVARLDAILTDSSKVQEALEL 519
L+I + V ++ + E R Q + + L +I + ++
Sbjct: 645 LEICDMASKPIPLVLNRQMIKILEDMGVAEDWFFRLQNQELTYLRSITASAQNTAVFIKR 704
Query: 520 MSSAENTNVLKELLNC-----GYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAM 574
+ + + + C YK PFL + + L L+ +ARI + G +
Sbjct: 705 QAVGDCIGLFRLFRQCHQWKINYK---VPFLRSLVEAVILRELRLLKHKARIPVDKGITL 761
Query: 575 MGCLDEKGTLEYGQ------------------GLMVVAKKPCLHPGDMRVLRAVDVPALH 616
G +DE L+ + G ++V + P L+ GD+++ P H
Sbjct: 762 FGIIDETEYLQENEVYVTFNTIQGRPVAPPTAGPVLVTRSPALYDGDIQICLNTVPPEDH 821
Query: 617 HMV---DCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKIL 673
+ +C++F AKG+R ++ SG D DG+IY + WD + P F P Y +
Sbjct: 822 PLRRHRNCIVFSAKGDRDLPSQLSGGDLDGDIYNIIWDPEARPKRTFAPADYPRVEPVNI 881
Query: 674 ARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSK 733
R V + D+ ++F D++ D LG+I H++ A + C L +L S DFSK
Sbjct: 882 GRLVEVHDMADFFIDFMKTDHLGVIAIRHMIMADQLDEGTSHPDCRKLAQLHSTAVDFSK 941
Query: 734 TGVAATIPSRLRVKIY-PDFM-------------------------EKQDKT-----WYE 762
TG+ + R + PDF+ ++ D T +Y
Sbjct: 942 TGIPVQMEHLPRGNNFRPDFLAPGPQAYMYNKSAIHMDQYIARTEYDEDDDTEPPRKYYR 1001
Query: 763 SQHIVGNLYREVN 775
S+ I+G LYR ++
Sbjct: 1002 SEKILGKLYRAID 1014
>gi|242221257|ref|XP_002476381.1| predicted protein [Postia placenta Mad-698-R]
gi|220724386|gb|EED78433.1| predicted protein [Postia placenta Mad-698-R]
Length = 1141
Score = 180 bits (456), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 173/664 (26%), Positives = 289/664 (43%), Gaps = 118/664 (17%)
Query: 270 KILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNG 329
+++VTP+ ++ GP+ SNRV R YP + NFLR++FVDE + ++ +G
Sbjct: 374 RVIVTPTCLHLEGPDPERSNRVFRRYPGQEQNFLRVTFVDE------TRLMYRFDREVDG 427
Query: 330 ERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA-----SRPELTAADIR 384
R I RV L G+ I + FE LA+S S +E+ +W E+ A+ I
Sbjct: 428 --RGFINRRVRHMLVQGLTIAGRHFEFLAYSQSALKEHAVWFVTPFRDPDGREVRASTII 485
Query: 385 ERMGDFRE------IKNVTKYAARLGQSFASSREALHVD--------------------S 418
+G FR I +YAAR+ Q+F ++ ++ V+
Sbjct: 486 ASLGSFRPAFEPQLIYCPARYAARISQAFTATDSSISVELEEVFYDPDIKDNTGQYCFTD 545
Query: 419 NIGKISAELAETVAKKCGYA--------IYTPSAFQIRYGGYK-------------VTLR 457
+G+IS LA ++ + YT FQIR+ G K + LR
Sbjct: 546 GVGRISPALARAISSELRAKKRRARRARTYT-RLFQIRFMGSKGMLSVDYQLSDRSIFLR 604
Query: 458 NNMFKYKSESTSLDILANSKYQREGVARLRLD------------NVFERKQREVVARLDA 505
+M K+ + SL++ + + G L VFE Q + V +
Sbjct: 605 PSMIKFDAPD-SLNVEIAQAFDKPGKYYLNRPLIMLLEGLGVPYEVFEALQDDAVQDAEG 663
Query: 506 I---LTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLL-ELR 561
L S+++ EA L +S ++ + + G +P +E F +++L EL+
Sbjct: 664 AVHSLESSARLLEAYGLGASFRLSSTMVNMHRLGLRPLSEDIFWQQMMDFAVNHVLRELK 723
Query: 562 TRARIFIQNGQAMMGCLDEKGTLEYGQ-----------------GLMVVAKKPCLHPGDM 604
ARI + +G ++G D G LE G+ G V+++ P +HPGD+
Sbjct: 724 HHARIPLPDGWTLVGVADVHGYLEEGEIFACVDSPDLLEPIYLEGPTVISRSPTIHPGDV 783
Query: 605 RVLRAVDVPA----LHH--MVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPL 658
+++ A+ P H + + V+F KGERP + G D DG++Y V P
Sbjct: 784 QLVHAIGRPPPGSPFEHESLRNGVVFSIKGERPLPSCLGGGDLDGDVYNVTTMPSLRPAR 843
Query: 659 QFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRC 718
++ +Y PA +K + T+EDV ++ A+YI +D+LGII ++ A + + C
Sbjct: 844 TYRSGSYKPAVKKTVDHPSTMEDVADFVAEYINSDTLGIIAINWLIIADQSSEGILDPHC 903
Query: 719 PDLVKLSSIVGDFSKTGVAATIP--SRLRVKIYPDF-----MEKQDKTWYESQHIVGNLY 771
L +L S D+ K+G + RL+ K PD+ + + +YES +G LY
Sbjct: 904 LRLAQLHSDAVDYPKSGNPVPLERIPRLKFKAKPDWNAPETLTRATPDFYESTRAIGRLY 963
Query: 772 REVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFK---YRTEYDNKLGNL 828
R + A T T A +F ++E +A DGF+ + ++L L
Sbjct: 964 RRIELPALRTVT-------RASRFQRRNLEDGHELTLADILDGFQEDNVDEDVISRLWEL 1016
Query: 829 MDYY 832
+YY
Sbjct: 1017 FEYY 1020
>gi|353235419|emb|CCA67432.1| related to RNA-directed RNA polymerase (RdRP) [Piriformospora
indica DSM 11827]
Length = 1186
Score = 180 bits (456), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 156/609 (25%), Positives = 270/609 (44%), Gaps = 109/609 (17%)
Query: 264 GLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQ 323
G+ ++ +TPS + GP +NRV+R Y F+R+ F +ED L
Sbjct: 396 GVFECHRATITPSSIILTGPLPDETNRVIRKYRKYAHKFIRIDFTEEDGLHLRK------ 449
Query: 324 ISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMF-----ASRPEL 378
N + + +R+ ++NG+++ ++FE LA+S+S +E+ +W + +
Sbjct: 450 --EKNVDLGAILDDRIGEFMKNGLLVAGRRFEFLAYSSSALKEHAVWFMTPFTTSDGQYV 507
Query: 379 TAADIRERMGDF-REIKNVTKYAARLGQSFASSREALHVDSN------------------ 419
T+ IR +GDF + I ++Y ARL Q+F+S+ ++ + N
Sbjct: 508 TSESIRRSLGDFSKVIYCPSRYGARLSQAFSSTEPSITIKVNEIRFIPDKESDQGSLYTD 567
Query: 420 -IGKISAELAETVAKK--------CGYAIYTPSAFQIRYGGYK-------------VTLR 457
+G +S ++AE + K + TPSAFQIR GG K V +R
Sbjct: 568 GVGTMSPQVAEEIWAKYTEPRSKRSRRRLKTPSAFQIRLGGLKGMLCVDSRLQGRVVCVR 627
Query: 458 NNMFKYKSESTSLDILANSKYQR--------------EGVARLRLDNVFERKQREVVARL 503
++M K+ S ++I + R E + ++ L+ + + V
Sbjct: 628 DSMNKFHSNDREVEI--ARAFDRPMTMFLNRPLIMLLETLKKVPLEPFMALQTKAVEETR 685
Query: 504 DAI--LTDSSKVQEALELMSSAENTNVLKEL----LNCGYKPDAE---PFLSMMPQTFHA 554
DA+ ++++ E L ++ T+V +L + K ++ PFL M Q
Sbjct: 686 DAMKSFDTAARLLEQYGLGTAFRLTSVFLQLHKLDVALALKDQSQGLLPFLGRMLQFVEN 745
Query: 555 SNLLELRTRARIFIQNGQAMMGCLDE----------------KGTLEYGQGLMVVAKKPC 598
L +L+ +ARI + N ++G DE G +Y +G +++++ P
Sbjct: 746 HILRDLKYKARIPVPNAWTLVGVSDEYDYLGENEIYARVRTIDGEEQYLEGPVMISRSPT 805
Query: 599 LHPGDMRVLRAVDVPA------LHHMVDCVLFPAKGERPHTNEC-SGSDQDGEIYFVCWD 651
+HPGD R++ A+ P+ L + +CV+FP KG P +C +G D DG++Y + D
Sbjct: 806 VHPGDARMVWAIGKPSRGAPPGLEDLTNCVVFPCKGH-PSLPQCLAGGDLDGDLYCLVLD 864
Query: 652 HDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPD 711
QFQ Y P L R TI+DV ++ +YI ND LG+I ++ A D
Sbjct: 865 PQLHFRWQFQHGDYDPPQLVTLDRPSTIKDVAQFVINYIKNDLLGVISTRSMLIADIRED 924
Query: 712 KAMSNRCPDLVKLSSIVGDFSKTG------VAATIPSRLRVKIYPDFMEKQDKTWYESQH 765
C L KL SI D+ KTG ++ S R + + + D Y+S
Sbjct: 925 CLADEDCVKLAKLHSIAVDYPKTGRHVEFEQMPSLESNRRPDWHANELNDNDPELYQSNR 984
Query: 766 IVGNLYREV 774
+G+L+R +
Sbjct: 985 HIGHLFRAI 993
>gi|171683804|ref|XP_001906844.1| hypothetical protein [Podospora anserina S mat+]
gi|170941862|emb|CAP67515.1| unnamed protein product [Podospora anserina S mat+]
Length = 1230
Score = 179 bits (455), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 140/544 (25%), Positives = 244/544 (44%), Gaps = 82/544 (15%)
Query: 270 KILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNG 329
++ ++P ++ GPE+ NR++R + + + F R+ DE+ L + +P IS
Sbjct: 445 RVSISPMRITLHGPELETKNRILRKFDGKANFFFRVQLCDENGQDL---LFNPTISLDT- 500
Query: 330 ERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWM---FASRPELTAAD-IRE 385
+Y R S LR GI + ++++ L FS+S R ++LW F +L + I E
Sbjct: 501 -----VYSRFKSILRKGIAVAGRQYKFLGFSHSSLRAHSLWFSAPFYHEGKLQIPEHIIE 555
Query: 386 RMGDFREIKNVTKYAARLGQSFASSREALHVDSN--------------------IGKISA 425
++GDF I++ + AAR+GQ+F + ++ + N +G +S
Sbjct: 556 QLGDFAPIRSPARCAARIGQAFTETPYSVSLVDNGVQTSEIPDVERNGRVFSDGVGVLSP 615
Query: 426 ELAETVAKKCGYAIYTPSAFQIRYGGYK-------------VTLRNNMFKYKS-ESTSLD 471
+ AE + + P+ FQIR+ G K + +R +M K++S + +LD
Sbjct: 616 QAAEAIHDAIPESKGEPTCFQIRWAGAKGMLSLDTELEGSQICIRPSMKKFESPDEANLD 675
Query: 472 ILANSKYQREGVARLRLDNVFE----------RKQREVVARLDAILTDSSKVQEALELMS 521
I + + ++ + E QR+ V L AI S L +
Sbjct: 676 ICDMASKPIPMMLNRQMIKILEDMDAPPWWFLELQRKEVNHLRAITRTVSSTASFLAMKD 735
Query: 522 SAENT---NVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCL 578
E+ ++L++ G + FL + + + ++ +ARI + G + G +
Sbjct: 736 IGESIRLPHLLRQTEAMGVDYHQDLFLRSVVEMALLKEIKLIKHKARIPVPKGITLFGVM 795
Query: 579 DEKGTLEYGQGLM------------------VVAKKPCLHPGDMRVLRAVDVPALHHMVD 620
DE G L+ GQ + V+ + P LHPGD+++ V P H +++
Sbjct: 796 DETGFLQEGQVYVSFDTMQGRYHEPPECQKVVITRSPALHPGDIQLAHHVIPPEGHPLLE 855
Query: 621 ---CVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ-FQPTAYTPAPEKILARD 676
CV+F +G+R + SG D DG+IY + WD + ++ F P Y P L R
Sbjct: 856 LRNCVVFSQRGDRDLPSMLSGGDLDGDIYNIIWDEAIVSQVRSFSPADYPRLPIVELGRK 915
Query: 677 VTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGV 736
V +D+ ++F D+I D LG+I H++ A P + C L +L S DFSKTG
Sbjct: 916 VEADDMIDFFVDFISQDCLGVIATRHMILADLAPQGTRDSDCVKLAELHSQAVDFSKTGR 975
Query: 737 AATI 740
A +
Sbjct: 976 AVNL 979
>gi|403177737|ref|XP_003336185.2| hypothetical protein PGTG_17766 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375173183|gb|EFP91766.2| hypothetical protein PGTG_17766 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1297
Score = 179 bits (455), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 170/623 (27%), Positives = 267/623 (42%), Gaps = 135/623 (21%)
Query: 264 GLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQ 323
G+ + +TP+ + GP N ++R Y D F+R++ +ED +P
Sbjct: 479 GIFKCRTVTITPTSLVLDGPCAEQGNSILRFY-DFNSAFIRVALREEDG--------APH 529
Query: 324 ISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWM---FASRPEL-T 379
N + + L N +++ ++FE L +S S R + W F R EL T
Sbjct: 530 RWDRNVDL-PEFFSHRYRPLANCLLLAGRQFEFLCYSASALRSHQAWFVCPFIHRGELIT 588
Query: 380 AADIRERMGDFREIKNV-TKYAARLGQSFASSREALHVDSN------------------I 420
A IR R+G F ++ N+ +Y AR+GQ+F ++R+A+ + + +
Sbjct: 589 ATKIRNRIGSFPKVINIPARYMARVGQAFTTTRKAVTLQPSQIKLIEDVERNGSVFTDGV 648
Query: 421 GKISAELAETVAKKCGYAIYTP-----------SAFQIRYGGYK-------------VTL 456
G IS LA KK +A+ P S +QIR GGYK V L
Sbjct: 649 GTISLSLA----KKVEHALAGPTGSKPPTELQASCYQIRLGGYKGMLSLDTTLEGDIVRL 704
Query: 457 RNNMFKYKSESTSLDILANSKYQREGVARLRLD------------NVFERKQREVVARLD 504
R +M K++ ES +LDI K+ R A L VF Q E VA ++
Sbjct: 705 RPSMKKFEGESYTLDI--AEKFDRPFPAFLNRQLIKILEDLGISGQVFLDAQAETVAMVE 762
Query: 505 ---AILTDSSKVQEALELMSSAENTNVLKEL-----------LNCGYKPDAEPFLSMMPQ 550
+ SS V E L S+ E +LK+L + C + D+ L++
Sbjct: 763 NSQGSMNQSSLVMERAGLGSAVELPQILKQLGRLMDSDRPEEIRCSFVQDSLDLLAV--- 819
Query: 551 TFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ----------------GLMVVA 594
H L EL+ RI + ++G DE G L Q G +A
Sbjct: 820 --HC--LRELKYNTRIPLPGSFNLVGVADEDGCLLENQIFVPIQLPGQRKYCLKGRFAIA 875
Query: 595 KKPCLHPGDMRVLRAVDVPA-----LHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVC 649
+ PCLHPGD++V+ A+ P L +V+CV+FP G+R + +G D DG++Y +
Sbjct: 876 RSPCLHPGDIQVVYAIGDPPVGSRRLASLVNCVVFPVIGKRSLPSCLAGGDLDGDLYTII 935
Query: 650 WDHDRIPPLQ--FQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAY 707
D +P + +QP +Y K TI D ++F YI+++ +G+I N H + A
Sbjct: 936 TDPQMVPDSRRIYQPGSYESGQMKTTESPCTIHDGIDFFFHYILDNIVGMIANKHTIIAD 995
Query: 708 SEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKI-YPDFM------------- 753
+ + +C DL +L S D+ KTG+A + R PDFM
Sbjct: 996 QADEGVLDRKCLDLAELHSQAVDYPKTGMAVPVTKIPRCSPKRPDFMCPEYMFNDHLSDK 1055
Query: 754 --EKQDKTWYESQHIVGNLYREV 774
+Q + Y S I+G L+R +
Sbjct: 1056 EKAQQAERTYPSPKILGQLFRAI 1078
>gi|83775472|dbj|BAE65592.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1188
Score = 179 bits (453), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 164/623 (26%), Positives = 268/623 (43%), Gaps = 130/623 (20%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
V+++ VTP+++ GPE+ NR++R +P+ + F+R+ F DE+ L + +
Sbjct: 397 VHRVNVTPTRITLHGPEMEPQNRILRKFPNHHEYFIRVQFCDENGEDL--------LFNA 448
Query: 328 NGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPEL-------TA 380
N + + I+ R + + GI I + + L FS+S R +W S P + T
Sbjct: 449 NVDYKD-IFGRFIDIMTRGIQIAGRTYNFLGFSHSSLRSRAVWF--SSPFVDDNGHMQTY 505
Query: 381 ADIRERMGDFREIKNVTKYAARLGQSFA---------------------SSREALHVDSN 419
I +G F I + + AAR+GQ+F +S + V S+
Sbjct: 506 FSIVSAIGKFSHITSPARCAARIGQAFTETPFMVPLEKHGVLVSTIPDLTSPDGSRVFSD 565
Query: 420 -IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK-------------VTLRNNMFKYKS 465
+G IS E+ ++ P+ FQIR GG K + +R +M K+ S
Sbjct: 566 GVGAISREVVASIWADIPLKRGNPTCFQIRLGGAKGMLAADSRLRTAVIQIRPSMIKFDS 625
Query: 466 EST-SLDI--LANSKYQ---REGVARLRLD-----NVFERKQREVVARLDAILTDSSKVQ 514
E +L+I +A+ Y V ++ D + F + Q E + RL +I + K
Sbjct: 626 EDMKNLEICNMASRPYPMVLNRQVIKILEDMGASKDWFFQMQNEELTRLQSITVSTDKTA 685
Query: 515 EALELMSSAENTNVLKELLNC-----GYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQ 569
L+ S AE + + C YK D FL + + L L+ +ARI ++
Sbjct: 686 RFLKDKSVAECIGLYRLYRQCYWTRLNYKKDG--FLRAIVEAVVLRELRLLKHKARIPVK 743
Query: 570 NGQAMMGCLDEKGTLEYGQ------------------GLMVVAKKPCLHPGDMR----VL 607
G + G +DE G L+ G+ G ++V + P LH GD++ V+
Sbjct: 744 KGMTLYGVIDETGFLQEGEVYVTFDRMEGRYAAPPGPGHILVTRSPALHCGDIQRAQNVI 803
Query: 608 RAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTP 667
D P +H +C++F KG R ++ SG D DG++Y V WD + F P Y P
Sbjct: 804 PPEDHPLRYHR-NCIVFSQKGSRDLPSKLSGGDLDGDLYHVIWDPELESVETFAPADY-P 861
Query: 668 APEKI-LARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSS 726
P I + RDV ++D+ +F +++ +D LG+I H+V A C L L S
Sbjct: 862 RPTSIDIGRDVRVDDMAAFFVEFMRSDILGMIAIRHMVMADQAASGTRDTSCRLLAGLHS 921
Query: 727 IVGDFSKTGVAATIPSRLRVKIY-PDFMEKQDKT-------------------------- 759
DFSKTG+ + RV Y PDF+ +T
Sbjct: 922 KAVDFSKTGIPVNMEDMPRVNRYRPDFLAPGPQTRLYNKSKIGLEQHVSHANYDDDDDDA 981
Query: 760 -------WYESQHIVGNLYREVN 775
+Y+S+ I+G LYR ++
Sbjct: 982 DVEEPYRYYKSEKILGKLYRAID 1004
>gi|317158412|ref|XP_001826725.2| rna-dependent rna polymerase [Aspergillus oryzae RIB40]
Length = 1206
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 164/623 (26%), Positives = 268/623 (43%), Gaps = 130/623 (20%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
V+++ VTP+++ GPE+ NR++R +P+ + F+R+ F DE+ L + +
Sbjct: 397 VHRVNVTPTRITLHGPEMEPQNRILRKFPNHHEYFIRVQFCDENGEDL--------LFNA 448
Query: 328 NGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPEL-------TA 380
N + + I+ R + + GI I + + L FS+S R +W S P + T
Sbjct: 449 NVDYKD-IFGRFIDIMTRGIQIAGRTYNFLGFSHSSLRSRAVWF--SSPFVDDNGHMQTY 505
Query: 381 ADIRERMGDFREIKNVTKYAARLGQSFA---------------------SSREALHVDSN 419
I +G F I + + AAR+GQ+F +S + V S+
Sbjct: 506 FSIVSAIGKFSHITSPARCAARIGQAFTETPFMVPLEKHGVLVSTIPDLTSPDGSRVFSD 565
Query: 420 -IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK-------------VTLRNNMFKYKS 465
+G IS E+ ++ P+ FQIR GG K + +R +M K+ S
Sbjct: 566 GVGAISREVVASIWADIPLKRGNPTCFQIRLGGAKGMLAADSRLRTAVIQIRPSMIKFDS 625
Query: 466 EST-SLDI--LANSKYQ---REGVARLRLD-----NVFERKQREVVARLDAILTDSSKVQ 514
E +L+I +A+ Y V ++ D + F + Q E + RL +I + K
Sbjct: 626 EDMKNLEICNMASRPYPMVLNRQVIKILEDMGASKDWFFQMQNEELTRLQSITVSTDKTA 685
Query: 515 EALELMSSAENTNVLKELLNC-----GYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQ 569
L+ S AE + + C YK D FL + + L L+ +ARI ++
Sbjct: 686 RFLKDKSVAECIGLYRLYRQCYWTRLNYKKDG--FLRAIVEAVVLRELRLLKHKARIPVK 743
Query: 570 NGQAMMGCLDEKGTLEYGQ------------------GLMVVAKKPCLHPGDMR----VL 607
G + G +DE G L+ G+ G ++V + P LH GD++ V+
Sbjct: 744 KGMTLYGVIDETGFLQEGEVYVTFDRMEGRYAAPPGPGHILVTRSPALHCGDIQRAQNVI 803
Query: 608 RAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTP 667
D P +H +C++F KG R ++ SG D DG++Y V WD + F P Y P
Sbjct: 804 PPEDHPLRYHR-NCIVFSQKGSRDLPSKLSGGDLDGDLYHVIWDPELESVETFAPADY-P 861
Query: 668 APEKI-LARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSS 726
P I + RDV ++D+ +F +++ +D LG+I H+V A C L L S
Sbjct: 862 RPTSIDIGRDVRVDDMAAFFVEFMRSDILGMIAIRHMVMADQAASGTRDTSCRLLAGLHS 921
Query: 727 IVGDFSKTGVAATIPSRLRVKIY-PDFMEKQDKT-------------------------- 759
DFSKTG+ + RV Y PDF+ +T
Sbjct: 922 KAVDFSKTGIPVNMEDMPRVNRYRPDFLAPGPQTRLYNKSKIGLEQHVSHANYDDDDDDA 981
Query: 760 -------WYESQHIVGNLYREVN 775
+Y+S+ I+G LYR ++
Sbjct: 982 DVEEPYRYYKSEKILGKLYRAID 1004
>gi|452838162|gb|EME40103.1| hypothetical protein DOTSEDRAFT_138071 [Dothistroma septosporum
NZE10]
Length = 947
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 165/622 (26%), Positives = 271/622 (43%), Gaps = 132/622 (21%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
V+KI++TP+ Y GP+ +NRV+R Y D+F+R+ F DED SP
Sbjct: 139 VHKIIITPAGTYLEGPDAEPTNRVLRRYHHSTDHFVRVIFQDED--------RSPMRHDP 190
Query: 328 NGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLW----MFASRPELTAAD- 382
++ + R L ++I + F L FS+S R + W M + + L A+
Sbjct: 191 RTDQSQIYHMRFKGVLDGSVLICGRAFSFLGFSHSSLRSQSCWFSAPMVSKQGSLVFAEQ 250
Query: 383 IRERMGDFREIKNVTKYAARLGQSFASSREAL-----------HVDSN-------IGKIS 424
+ + +GDF +I+ K AAR+GQ+F + ++ +V+ N +G IS
Sbjct: 251 VIKELGDFSKIRVPAKCAARIGQNFTDTNASVKLRPEEVFELPNVERNGRDFSDGVGTIS 310
Query: 425 AELAETVAKKCGY-AIYTPSAFQIRYGGYK-------------VTLRNNMFKYKSEST-S 469
L ++V ++ G + P+A QIR+ G K + +R NM KY++ +T
Sbjct: 311 ERLLQSVHRRYGSKKLLKPTALQIRFQGSKGMVALDSRLPGKRLMIRPNMKKYETAATWD 370
Query: 470 LDILANSKYQREGVARLRLDNVFERKQREVVARLDAILTDSSKVQEAL-----ELMSSAE 524
L+I G A L V R +V+ L ++ +Q A + +S
Sbjct: 371 LEIC--------GAAFRPLPMVLNRPFIKVMEDLGTPISTFMDLQNAAMVHLQRMTASCI 422
Query: 525 NTNV----------------LKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFI 568
NT + ++ L G + F+ + + + L +++ + RI +
Sbjct: 423 NTAIFLDDSEACRATRMSELIRYLGQIGLDYHHDHFMYSVVEMAVVAKLRDIKYKGRIPV 482
Query: 569 QNGQAMMGCLDEKGTL------------EYGQGLMV-----VAKKPCLHPGDMRVLRAVD 611
+ G + G +DE G L E G+ ++V V + P LHPGDM+V+ AVD
Sbjct: 483 EQGVTLYGIMDETGYLGPREIYVVTEKAEGGKKVVVANDIIVTRSPALHPGDMQVVNAVD 542
Query: 612 VP---ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPA 668
VP L + + V+F G+R ++ G D DG++Y + WD P FQP Y
Sbjct: 543 VPQTSPLKRLSNVVVFSKHGDRDLPSQLGGGDLDGDLYNIIWDPKLRPMRTFQPADYPRV 602
Query: 669 PEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIV 728
L RDV +D+ ++F ++ +D LG+IC H+ A + C L ++S
Sbjct: 603 SAVQLDRDVVRKDMSDFFVTFMESDVLGMICTTHLQLADQRSAGVLDPDCIKLAGMASTA 662
Query: 729 GDFSKTGVAAT---IPSRLRVKIYPDFM-------------------------------- 753
DFSKTG+ IP RVK PDFM
Sbjct: 663 VDFSKTGIPVNIKDIPRYTRVK--PDFMAPSPRVVVSDGGFLDFEEDDDGEDDAFEGLDT 720
Query: 754 EKQDKTWYESQHIVGNLYREVN 775
E++ +Y S+ +G+LYR ++
Sbjct: 721 ERRRTRFYRSEKALGHLYRAID 742
>gi|328848635|gb|EGF97840.1| hypothetical protein MELLADRAFT_114044 [Melampsora larici-populina
98AG31]
Length = 1135
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 191/698 (27%), Positives = 306/698 (43%), Gaps = 140/698 (20%)
Query: 261 LDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVL 320
L G + +TPS+ GP SN V+R Y D NFLR+S +E+ L
Sbjct: 436 LSGDSFPCRTVTITPSRFILEGPVTEQSNSVLRMYRD-THNFLRISIREEN-----GLTL 489
Query: 321 SPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWM----FASRP 376
P + + + R L L G+ + +KFE L +S+S RE+ W +
Sbjct: 490 RP---DRDVDILRLLKTRYLDFLTQGLNLCGRKFEFLGYSSSALREHQAWFVCPFYKGDS 546
Query: 377 ELTAADIRERMGDFREIKNV-TKYAARLGQSFASSREAL-----------HVDSN----- 419
+TAA IR+R+GDF ++ N+ +Y AR+ Q+F S+R++L V+ N
Sbjct: 547 LVTAASIRQRLGDFSKVINIPARYMARVAQAFTSTRQSLTLLPSQIVRIEDVERNGSCFT 606
Query: 420 --IGKISAELAETVAKKCGYAIYT--------PSAFQIRYGGYK-------------VTL 456
+G IS +LA V + + + S FQIR GG+K V +
Sbjct: 607 DGVGTISPDLARQVDEVLSAGLPSRKRRHHAKSSCFQIRLGGFKGMLSVDPTLKQACVCV 666
Query: 457 RNNMFKYKS-ESTSLDILAN-----SKYQREGVARLRLD-----NVFERKQREVVARLDA 505
R +M K+ S +S +LDI + Y + ++ D VF QRE+V++++
Sbjct: 667 RPSMDKFVSPDSLTLDIAGSFTRPLPAYLNRPMIKVLEDLGIHEQVFLALQREIVSKVEH 726
Query: 506 ILTDSSKVQEALELMSSAENT---NVLKELL-------NCGYKPDAEPFLSMMPQTFHAS 555
T+ + E ++ +S A + ++L++L N E + M+ Q F
Sbjct: 727 SRTNLRRASELMDQLSMARTSGMPSILRQLGTLMGDEGNTQSDFIEECYDLMIMQCFR-- 784
Query: 556 NLLELRTRARIFIQNGQAMMGCLDEKGTLE----------------YGQGLMVVAKKPCL 599
+L+ RARI + ++G DE L Y +G + +++ PCL
Sbjct: 785 ---DLKYRARIPLDASYTLVGVADEDQVLPPNFVYACIQYPGKAPFYLEGPITISRSPCL 841
Query: 600 HPGDMRVLRAVD------VPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHD 653
HPGD+RV+ + P L+ + +CV+F G R + G D DG++Y + +
Sbjct: 842 HPGDVRVVTGIGKLDLERAPRLNALRNCVVFSVAGMRSLPSCLGGGDLDGDLYTLITLPE 901
Query: 654 RIPPL-QFQPTAYTPAPE-KILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPD 711
IP + P A APE K L R TIED +F DYI +D +G+I + H+ A
Sbjct: 902 LIPATARLHPPASYTAPEMKRLDRPCTIEDGAAFFLDYISSDLVGVIASRHLHIADQADQ 961
Query: 712 KAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRV--KIYPDFM------EKQDKTWYES 763
+ C +LV L S D+ KTGV I R ++ PDFM ++ +YES
Sbjct: 962 GTRDDLCLELVSLHSDAVDYPKTGVPVAIDQLPRAPNRMKPDFMCPEHHERREGDDYYES 1021
Query: 764 QHIVGNLYREV-------------NGIAPSTTTIKSFA----------KEGAMQFYDTDM 800
Q ++G L+R++ G P TTT + A +EG YD+++
Sbjct: 1022 QKVLGKLFRQIPAEKIDIFHHHTHPGGPPVTTTSHTAALFERIRLAILEEGEGALYDSEI 1081
Query: 801 EVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEA 838
+ E Q R E D ++ + + T+A
Sbjct: 1082 VLLDADEDDPQ------RIERDRQINRAYTAWFVSTQA 1113
>gi|296416873|ref|XP_002838094.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295633999|emb|CAZ82285.1| unnamed protein product [Tuber melanosporum]
Length = 1218
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 162/618 (26%), Positives = 258/618 (41%), Gaps = 119/618 (19%)
Query: 265 LIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQI 324
+ V+ + +TP+ YF GP NRV+R YPD + F+R++F +ED L Q
Sbjct: 437 MALVHHVSITPAGCYFFGPLPEPQNRVLRKYPDHHEYFIRVTFCEEDGEPLLFQHKVDQ- 495
Query: 325 SSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA----SRPELTA 380
S + + R Y L GI I +KFE L FS+S R + W A L
Sbjct: 496 -SPIYKNQFRFY------LSEGITIAGRKFEFLGFSSSSLRTQSCWFMAPFYLDGKYLDP 548
Query: 381 ADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDS------------------NIGK 422
+ R+GDF I KYAAR+GQ+F+ + ++ V + +G
Sbjct: 549 KIVTSRLGDFSSITCPGKYAARVGQAFSDTYGSIDVRAEHEVEIPDVVRNGRTFSDGVGT 608
Query: 423 ISAELAETVAKKCGYAIYT-PSAFQIRYGGYK-------------VTLRNNMFKYKSEST 468
IS +L + V ++ T P+ FQIR+ G K LR +M K++ S
Sbjct: 609 ISQQLLDRVWRESESLRKTRPTVFQIRFAGAKGVVSLDTRLVGDKFCLRPSMIKFRGSSD 668
Query: 469 SLDILANSK------YQREGVARLRLDNVFERK----QREVVARLDAILTDSSKVQEALE 518
+ NS R + L VFE Q+E + L T + L+
Sbjct: 669 RKIEICNSADWLPMYLNRPLIKVLEDIGVFESTFMTLQKEAIEDLRQSTTSVANAANFLK 728
Query: 519 LMSSAENTN----VLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAM 574
A V++ L N G+ + FL + ++L L+ +ARI ++ G +
Sbjct: 729 RQRIASTAIRLPWVIESLNNLGFNFRDDHFLEQAFELSLITSLRSLKHKARIPVKKGMTL 788
Query: 575 MGCLDEKGTLEYGQ-----------------GLMVVAKKPCLHPGDMRVLRAV------- 610
+G +DE G L+ GQ G +++ + P HPGD+++ A+
Sbjct: 789 VGVMDETGYLQEGQIYVTVQARDKSTSESIAGRVLITRSPVHHPGDVQMALAIGTNQLPP 848
Query: 611 DVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPE 670
D P L + +CV FP +GER + D +Y + +D + P Y P
Sbjct: 849 DSP-LRALRNCVAFPQRGERDMPSMLGAPD----LYNIIYDARFSLKTTYDPAEYPKVPT 903
Query: 671 KILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGD 730
K L R V D+ ++F +++ N+ LG+I + H++ A + + C L +L+S D
Sbjct: 904 KDLGRPVKTSDIVDFFLEFMENNLLGMISSRHLITADKKVEGVHHPDCLKLAELASTAVD 963
Query: 731 FSKTGVAAT---IPSRLRVKIYPDFMEKQDKT---------------------------W 760
F KTG+ + P K PDFM + +
Sbjct: 964 FPKTGIKVSRSDFPKATFAK--PDFMAPGPRILIKRGPEFVEEDVVPDDDDDDEDTPTLY 1021
Query: 761 YESQHIVGNLYREVNGIA 778
YES+ ++G LYRE++ A
Sbjct: 1022 YESEKVLGKLYREIDETA 1039
>gi|328855950|gb|EGG05073.1| hypothetical protein MELLADRAFT_64236 [Melampsora larici-populina
98AG31]
Length = 1240
Score = 177 bits (448), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 174/611 (28%), Positives = 278/611 (45%), Gaps = 111/611 (18%)
Query: 261 LDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVL 320
L G + +TPS+ GP SN V+R Y D NFLR+S +E+ L
Sbjct: 436 LSGDSFPCRTVTITPSRFILEGPVTEQSNSVLRMYRD-THNFLRISIREEN-----GLTL 489
Query: 321 SPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWM----FASRP 376
P + + + R L L G+ + +KFE L +S+S RE+ W +
Sbjct: 490 RP---DRDVDILRLLKTRYLDFLTQGLNLCGRKFEFLGYSSSALREHQAWFVCPFYKGDS 546
Query: 377 ELTAADIRERMGDFREIKNV-TKYAARLGQSFASSREAL-----------HVDSN----- 419
+TAA IR+R+GDF ++ N+ +Y AR+ Q+F S+R++L V+ N
Sbjct: 547 LVTAASIRQRLGDFSKVINIPARYMARVAQAFTSTRQSLTLLPSQIVRIEDVERNGSCFT 606
Query: 420 --IGKISAELAETVAKKCGYAIYT--------PSAFQIRYGGYK-------------VTL 456
+G IS +LA V + + + S FQIR GG+K V +
Sbjct: 607 DGVGTISPDLARQVDEVLSAGLPSRKRRHHANSSCFQIRLGGFKGMLSVDPTLKQACVCV 666
Query: 457 RNNMFKYKS-ESTSLDILAN-----SKYQREGVARLRLD-----NVFERKQREVVARLDA 505
R +M K+ S +S +LDI + Y + ++ D VF QRE+V++++
Sbjct: 667 RPSMDKFVSPDSLTLDIAGSFTRPLPAYLNRPMIKVLEDLGIHEQVFLALQREIVSKVEH 726
Query: 506 ILTDSSKVQEALELMSSAENT---NVLKEL-------LNCGYKPDAEPFLSMMPQTFHAS 555
T+ + E ++ +S A + ++L++L N E + M+ Q F
Sbjct: 727 SRTNLRRASELMDQLSMARTSGMPSILRQLGTLMGDESNTQSDFIEECYDLMIMQCFR-- 784
Query: 556 NLLELRTRARIFIQNGQAMMGCLDEKGTLE----------------YGQGLMVVAKKPCL 599
+L+ RARI + ++G DE L Y +G + +++ PCL
Sbjct: 785 ---DLKYRARIPLDASYTLVGVADEDQVLPPNFVYACIQYPGKAPFYLEGPITISRSPCL 841
Query: 600 HPGDMRVLRAVD------VPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHD 653
HPGD+RV+ + P L+ + +CV+F G R + G D DG++Y + +
Sbjct: 842 HPGDVRVVTGIGKLDLERAPRLNALRNCVVFSVAGMRSLPSCLGGGDLDGDLYTLITLPE 901
Query: 654 RIPPL-QFQPTAYTPAPE-KILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPD 711
IP + P A APE K L R TIED +F DYI +D +G+I + H+ A
Sbjct: 902 LIPATARLHPPASYTAPEMKRLDRPCTIEDGAAFFLDYISSDLVGVIASRHLHIADQADQ 961
Query: 712 KAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRV--KIYPDFM------EKQDKTWYES 763
+ C +LV L S D+ KTGV I R ++ PDFM ++ +YES
Sbjct: 962 GTRDDLCLELVSLHSDAVDYPKTGVPVAIDQLPRAPNRMKPDFMCPEHHERREGDDYYES 1021
Query: 764 QHIVGNLYREV 774
Q ++G L+R++
Sbjct: 1022 QKVLGKLFRQI 1032
>gi|384495057|gb|EIE85548.1| hypothetical protein RO3G_10258 [Rhizopus delemar RA 99-880]
Length = 1125
Score = 177 bits (448), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 169/723 (23%), Positives = 284/723 (39%), Gaps = 125/723 (17%)
Query: 234 YDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVR 293
YDP + ++++ + T P + G Y+ K+L+TP+ VY P + N +
Sbjct: 339 YDPNMSINNAFKRN----PYITDPPEPIPEGYTYLRKVLITPTSVYPLQPILQKMNHLQY 394
Query: 294 SYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKK 353
+ D FL + F DE+LG P I S + + ++Y R+ L+ G+++ +
Sbjct: 395 QFQRYSDRFLLIQFTDEELG--------PIIPSPHPNQNDKLYNRIFKVLKRGLMLSGRY 446
Query: 354 FETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREA 413
+E L S R+++ W FA EL DI +GDF+EI V KY +GQ A +
Sbjct: 447 YEFLCSSLDDLRDHSCWFFAPTDELNRDDIIYWLGDFQEISCVPKYIQSVGQVMAPRLTS 506
Query: 414 LHV------------------DSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGY--- 452
L + S GK+S ++A ++ G YTP+ + G
Sbjct: 507 LEIKPKEVEEIDDYEHNGIIYSSECGKMSPQVAREISSLLGLK-YTPNVVKFNLAGARGI 565
Query: 453 ----------KVTLRNNMFKYKSESTSLDILANSKYQREGVARLRLDNVFERKQREVVAR 502
K+ LR + +E +L+I SK +R + R + + VV +
Sbjct: 566 LMLSNYLQKRKIQLRTGQIHFNTERLTLEINKISKRERAYLDRYSITLLTGLGIHPVVFQ 625
Query: 503 LDAILTDSSKVQEALELMSSAENTNVLKELLN----------------CGYKPDAEPFLS 546
+QE LM + N L L++ G+ ++P ++
Sbjct: 626 ----QITEGVLQEY--LMGGPQKENFLNHLMDEYYSDHFAKCFNRVLCSGFLERSDPLIT 679
Query: 547 MMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ------------------ 588
+ F L E++ +I+IQ+G +DE G+L +
Sbjct: 680 NLVLAFQNKVLDEIKGNTKIYIQDGARAFAVMDETGSLGENEVFFQTSTSAGLDSELNVI 739
Query: 589 -GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYF 647
G ++ + +P D+ +++AVD P L + +++ A R N CS D
Sbjct: 740 IGKCLIFRNSSCNPNDVMIVKAVDSPKLRSYTNVLIYSAVSSRHLLNICSHDDA------ 793
Query: 648 VCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAY 707
D + P++F DV ++ YI D +I +A V A
Sbjct: 794 ---DENNFTPIKFG-------------------DVSKFIVKYISEDQTKLIKDAWVASAD 831
Query: 708 SEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIV 767
+ SI+ ++KTG++ L PDFME+ Y+S+ +
Sbjct: 832 RHSTSIYHGNALYFAQQLSIMIAYAKTGISVPTSEELYEYPIPDFMEQDSLMSYQSKKPL 891
Query: 768 GNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGN 827
G ++R V TI+ YDT + V G + + D K + YDN L
Sbjct: 892 GYIHRIVK-------TIEKRPYVSNRCEYDTRLYVEGMHKFIL--DARKTKMRYDNSLRL 942
Query: 828 LMDYYGIKTEAEMLSRCIMEMAK---SFDKKRDLEAISFSVRSLRKEARAWFNKKKNDSD 884
LM YGI +E E +S CI+ K DKK + I + + E + +F + D
Sbjct: 943 LMGEYGICSEIEFISGCIVHFPKYTSESDKKELTQKIKMAYIQFKNEWKKYFEFEFYKED 1002
Query: 885 SSH 887
H
Sbjct: 1003 VKH 1005
>gi|391864263|gb|EIT73559.1| RNA-directed RNA polymerase QDE-1 [Aspergillus oryzae 3.042]
Length = 1188
Score = 177 bits (448), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 164/623 (26%), Positives = 267/623 (42%), Gaps = 130/623 (20%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
V+++ VTP+++ GPE+ NR++R +P+ + F+R+ F DE+ L + +
Sbjct: 397 VHRVNVTPTRITLHGPEMEPQNRILRKFPNHHEYFIRVQFCDENGEDL--------LFNA 448
Query: 328 NGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPEL-------TA 380
N + + I+ R + GI I + + L FS+S R +W S P + T
Sbjct: 449 NVDYKD-IFGRFKDIMTRGIQIAGRTYNFLGFSHSSLRSRAVWF--SSPFVDDNGHMQTY 505
Query: 381 ADIRERMGDFREIKNVTKYAARLGQSFA---------------------SSREALHVDSN 419
I +G F I + + AAR+GQ+F +S + V S+
Sbjct: 506 FSIVSAIGKFSHITSPARCAARIGQAFTETPFMVPLEKHGVLVSTIPDLTSPDGSRVFSD 565
Query: 420 -IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK-------------VTLRNNMFKYKS 465
+G IS E+ ++ P+ FQIR GG K + +R +M K+ S
Sbjct: 566 GVGAISREVVASIWADIPLKRGNPTCFQIRLGGAKGMLAADSRLRTAVIQIRPSMIKFDS 625
Query: 466 EST-SLDI--LANSKYQ---REGVARLRLD-----NVFERKQREVVARLDAILTDSSKVQ 514
E +L+I +A+ Y V ++ D + F + Q E + RL +I + K
Sbjct: 626 EDMKNLEICNMASRPYPMVLNRQVIKILEDMGASKDWFFQMQNEELTRLQSITVSTDKTA 685
Query: 515 EALELMSSAENTNVLKELLNC-----GYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQ 569
L+ S AE + + C YK D FL + + L L+ +ARI ++
Sbjct: 686 RFLKDKSVAECIGLYRLYRQCYWTRLNYKKDG--FLRAIVEAVVLRELRLLKHKARIPVK 743
Query: 570 NGQAMMGCLDEKGTLEYGQ------------------GLMVVAKKPCLHPGDMR----VL 607
G + G +DE G L+ G+ G ++V + P LH GD++ V+
Sbjct: 744 KGMTLYGVIDETGFLQEGEVYVTFDRMEGRYAAPPGPGHILVTRSPALHCGDIQRAQNVI 803
Query: 608 RAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTP 667
D P +H +C++F KG R ++ SG D DG++Y V WD + F P Y P
Sbjct: 804 PPEDHPLRYHR-NCIVFSQKGSRDLPSKLSGGDLDGDLYHVIWDPELESVETFAPADY-P 861
Query: 668 APEKI-LARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSS 726
P I + RDV ++D+ +F +++ +D LG+I H+V A C L L S
Sbjct: 862 RPTSIDIGRDVRVDDMAAFFVEFMRSDILGMIAIRHMVMADQAASGTRDTSCRLLAGLHS 921
Query: 727 IVGDFSKTGVAATIPSRLRVKIY-PDFMEKQDKT-------------------------- 759
DFSKTG+ + RV Y PDF+ +T
Sbjct: 922 KAVDFSKTGIPVNMEDMPRVNRYRPDFLAPGPQTRLYNKSKIGLEQHVSHANYDDDDDDA 981
Query: 760 -------WYESQHIVGNLYREVN 775
+Y+S+ I+G LYR ++
Sbjct: 982 DVEEPYRYYKSEKILGKLYRAID 1004
>gi|403413304|emb|CCM00004.1| predicted protein [Fibroporia radiculosa]
Length = 1503
Score = 176 bits (445), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 164/643 (25%), Positives = 280/643 (43%), Gaps = 123/643 (19%)
Query: 257 PAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLY 316
P + L G + + TP+++ GP +S SNRV+R YPD D+FLR+ F DED + Y
Sbjct: 398 PPIPLPPGHFLCHHVTYTPTRMILEGPYVSQSNRVIRRYPDHQDHFLRVDFRDEDRLQ-Y 456
Query: 317 STVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFAS-- 374
SS +++RV LR+G + + FE LA+S S RE+ +W
Sbjct: 457 RWAREVDGSSL-------LFDRVGGVLRSGFELAGRYFEFLAYSQSALREHAVWFINPFY 509
Query: 375 RPE---LTAADIRERMGDFRE-IKNVTKYAARLGQSFASSREALHVDSNIGKISAELAE- 429
PE +TA IR+ +GDF I+ +KYAARL Q+F ++ ++ + + +L E
Sbjct: 510 HPEEGHITAQTIRDSLGDFSGVIRQPSKYAARLAQAFTATDPSVRITRGQWEEMPDLGEK 569
Query: 430 ---------TVAKKCGYAIY---------------TPSAFQIRYGGY------------- 452
T++ + G I+ PSA+QIR+ GY
Sbjct: 570 PYEFTDGVGTISTELGNLIWDALCASRPENRRRGLKPSAYQIRFLGYKGMVVIDEQLQGI 629
Query: 453 KVTLRNNMFKYKSESTSL-DILANSKYQREGVARLR----------------LDNVFERK 495
K+ LR +M K+++ L +I ++R G + L N+ ER
Sbjct: 630 KMHLRPSMNKFRAHDDDLAEIEIARAFERPGTSYLNRPLIMILEDRGVDKKAFINLQERA 689
Query: 496 QREVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNC--GYKPD------AEPFLSM 547
+ ++ D+I T S + +A L S +L+ L N G+K + +PF+
Sbjct: 690 KTDIYTASDSI-TKSVSMLKAHTLGKSYGLDFILQSLQNIGMGFKHEKSIHVLQDPFIER 748
Query: 548 MPQTFHASNLLELRTRARIFIQNGQAMMGCLDE----------------KGTL------- 584
+ L +++ ARI I + ++G DE KG +
Sbjct: 749 LIHYSKNHVLRDIKHGARIPIPDSYLLVGVADEGPAYVHAGMENVFCLKKGEIFACVQNA 808
Query: 585 -----EYGQGLMVVAKKPCLHPGDMRVLRAVDVPA------LHHMVDCVLFPAKGERPHT 633
Y +G +V+++ P +HPGD++ + A+ P ++ + V+ P+ G R
Sbjct: 809 DDPEPTYLKGSVVISRSPVVHPGDVQRVWAIGSPPPDKVCFFRNLKNVVVLPSAGGR-SL 867
Query: 634 NECSGSDQDGEIYFVCWDHDRIPPLQFQ-PTAYTPAPEKILARDVTIEDVEEYFADYIVN 692
C G + H + P + + P +Y A + L RD TI D+ ++ +Y+ +
Sbjct: 868 ASCLGGGDLDGDLYSIIKHGPLLPTEHEDPASYLSAGTRTLDRDSTIADICDFVVEYLNS 927
Query: 693 DSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATI---PSRLRVKIY 749
D LG++ + H++ A +C L +L S D+ K G+ I P L +
Sbjct: 928 DVLGLLSDRHLIIADQSKHGTNDTKCLSLAELCSQAVDYPKNGIPVDIHDSPHWL-IPYK 986
Query: 750 PDFMEKQDKT-----WYESQHIVGNLYREVNGIAPSTTTIKSF 787
PD+ + +D +YES +G+L+R + + PS + F
Sbjct: 987 PDWHQAEDAAPRHTDYYESHRALGDLFRNIAIVDPSLVSPAEF 1029
>gi|328872313|gb|EGG20680.1| RNA-directed RNA polymerase [Dictyostelium fasciculatum]
Length = 2876
Score = 176 bits (445), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 180/665 (27%), Positives = 291/665 (43%), Gaps = 119/665 (17%)
Query: 266 IYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQIS 325
+Y+ K+ VTP+++ F PEI NR +R + D F+++ FV+E+L + L ++
Sbjct: 1268 VYIKKVFVTPTRIIFQKPEIMQCNRSIRLF--GADRFMQVQFVEENLD--HRIELQQSLA 1323
Query: 326 STNGERRTRIYERVLSTLRNGI-VIGDKKFETLAFSNSQERENTLWMFAS-RPELTAADI 383
S S ++ GI V G F L S+SQ R+N W + + E AD
Sbjct: 1324 SYTN-----------SMMKKGIHVPGFGTFHYLGNSSSQARKNMSWFYCQDKMENAKADG 1372
Query: 384 RER------------MGDFREIKNVTKYAARLGQSFASS-------REALHVD------- 417
E +G+F +N KY + FAS+ E H D
Sbjct: 1373 GEEQVYSLDHVRDTLLGEFTNFENPRKYLRAINLVFASTMPSIVIAEEDYHEDIPDVIVN 1432
Query: 418 -----SNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK------------VTLRNNM 460
IG I + A+ V + C Y I + AFQIR GG K V LR +M
Sbjct: 1433 GYNFTEGIGYIGWKTAQKVNEACEY-IQSTCAFQIRIGGNKGVVVVRPDIQNGVYLRKSM 1491
Query: 461 FKYKSEST----SLDILANSKYQREGVAR--LRLDNVFERKQREVVARLDAILTDSSKVQ 514
K+ + S +L+I++ Y+ + R + L + R + L L + + +
Sbjct: 1492 KKFSTTSNEWSRTLEIVSIPAYKPCTLNRQVINLLSGLGVPDRCFLTLLSQSLNELASLL 1551
Query: 515 EALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAM 574
++ A ++++ ++ + D P + + L+E R + I I + +
Sbjct: 1552 HLPKVAKRALSSDLFDDVSDGEILSD--PMIRGTLHRIYCKRLVEYRDKCFIPIDTARTL 1609
Query: 575 MGCLDEKGTLEYGQ----------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHM 618
+G D+ +L+ GQ G + VAK PCLH GD+R+++AVD+PALHH+
Sbjct: 1610 LGVTDDTASLKEGQVFLQVSDENGELQIVTGPVAVAKNPCLHAGDVRIVQAVDIPALHHL 1669
Query: 619 VDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVT 678
VD V F G P ECSGSD DG+ YFV +D + I ++ Q A+ D T
Sbjct: 1670 VDVVCFSQNGSVPTFQECSGSDLDGDRYFVLFDREMIGEIK-QHDAFLGEDAVAADSDPT 1728
Query: 679 IEDVEEYFADYIVN---DSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFS--- 732
I A YI N +LG+I AH+ S + P + L+ + F
Sbjct: 1729 ITQ-SSLIAQYITNIQKGTLGMIALAHLAVC-----DVHSPKHPLAIALA--IEHFKEVD 1780
Query: 733 --KTGVAATIPSRL------RVKIYPDFMEKQ--DKTWYESQHIVGNLYREVNGIAPSTT 782
KTGV IP+ + + +P+FMEK K+++ES I+G LY + S
Sbjct: 1781 RVKTGVGGEIPTDVFQILGEQFDKFPNFMEKSLPQKSYWESDKILGRLYAQ----CVSLQ 1836
Query: 783 TIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLS 842
+ F E + D + G++ Q D + Y +++G+L+ Y I+ E ++L
Sbjct: 1837 NVIRFMPEVKV---DPHLLTPGWE--TYQADAIETYRRYRHQVGSLLKRYDIENEEDVLI 1891
Query: 843 RCIME 847
+ + E
Sbjct: 1892 QYVDE 1896
>gi|392575092|gb|EIW68226.1| hypothetical protein TREMEDRAFT_74213 [Tremella mesenterica DSM
1558]
Length = 1004
Score = 175 bits (444), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 150/573 (26%), Positives = 256/573 (44%), Gaps = 93/573 (16%)
Query: 265 LIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQI 324
L+ + + VTP+++ P SN V R Y +ID+ +R+ F DE+ +++ + Q+
Sbjct: 338 LVLIRTVQVTPTRLLIGAPTPEPSNSVTRRYAGKIDSIIRVQFSDEE-DRIFVQDYTKQV 396
Query: 325 SSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIR 384
S + + RV LR G+V+G +++ +A S+SQ++E+ +W F E+ +++
Sbjct: 397 DSQRPD--LGVMARVRRALRWGLVVGGRRYLPVASSSSQQKEHAMW-FIDNKEIDMLELQ 453
Query: 385 ERMGDFREIKNVTKYAARLGQSFASSREA-LHVD----------------SNIGKISAEL 427
MG E + K+AAR+G F++SR ++VD +G E+
Sbjct: 454 RWMGQVDETI-IAKHAARMGLPFSTSRIVEINVDIGLQIPDVERNGHCFTDGVGLAGFEV 512
Query: 428 AETVAKKCGY---AIYTPSAFQIRYGGYK--------------VTLRNNMFKYKSESTSL 470
A+ G+ TPSA Q R GG K V +R +M K+KS L
Sbjct: 513 MREAARALGFREGINSTPSAIQFRLGGAKGMLAFWPGRVKDHEVKMRKSMVKFKSGLKDL 572
Query: 471 DILANSKYQ-REGVARLRLDNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVL 529
+++ G+ + ++F + + + T + ++ +L+S+ +L
Sbjct: 573 NVVRFIMIMCANGIPEQLMIDIFNDAVASIKGLRERVATKTLS-RDDHKLISTCSEFPLL 631
Query: 530 KELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQG 589
L+ G+ + P + + L +L+ RAR+ + G ++G DE GTL+ G+
Sbjct: 632 A-LIKAGFHEN--PMILDICSIVETRALQDLKWRARVRLPTGVFLIGIADETGTLKEGEV 688
Query: 590 L-----------------MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPH 632
++V + P LHPGD+R AVD P L H+ + ++F +GER
Sbjct: 689 FCQYQESDDTPPVIVESEVIVCRAPALHPGDVRRAFAVDNPYLRHLKNVLVFSVQGERDL 748
Query: 633 TNECSGSDQDGEIYFVCWDHDRIPPLQFQ------------PTAYTPAPEKILARDVTIE 680
N G D DG+ P F P + AP++ + +
Sbjct: 749 PNMLGGGDLDGDA-----------PQGFPSDELYGSSSATGPKGDSTAPQREFCSVMVTD 797
Query: 681 DVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATI 740
D + ND LG + N H+ + E C +L ++ S DF KTG AA +
Sbjct: 798 DSQ--------NDVLGQVDNCHLARSDWEDKGPFHPDCLELSEIHSTAVDFPKTGQAAIL 849
Query: 741 PSRLRVKIYPDFMEKQ-DKTWYESQHIVGNLYR 772
+R K++PDFM+K K YESQ I+G L+R
Sbjct: 850 DPSMRPKLWPDFMDKDATKKTYESQKILGILFR 882
>gi|346325370|gb|EGX94967.1| rna-dependent rna polymerase [Cordyceps militaris CM01]
Length = 1252
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 153/575 (26%), Positives = 249/575 (43%), Gaps = 104/575 (18%)
Query: 267 YVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISS 326
+V K +V+P+++ GP+ NRV+R +PD D FLR+SF DED +L +P++S+
Sbjct: 436 WVFKAIVSPTRISLQGPDPESRNRVLRMFPDRGDQFLRVSFCDEDGQRL---AFNPRVSN 492
Query: 327 TNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRER 386
IYER L GI I + F L FS+S R ++ W A P + A R+
Sbjct: 493 DP------IYERFREVLTKGIRIAGRHFSFLGFSHSSLRSHSTWFLA--PFIDADGQRQN 544
Query: 387 -------MGDFREIKNVTKYAARLGQSFASSREALHV----------------DSN---- 419
+G+F +I K AAR+GQ+F+ + A+ + D N
Sbjct: 545 RDTILAVLGNFSDILTPAKCAARIGQAFSETPYAVDLFETRIGVRWIPDVKSADGNRVFS 604
Query: 420 --IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYKVTLRNNMFKYKSESTSLDILANSK 477
+G IS E K + FQIR+ G K L + + + + + K
Sbjct: 605 DGVGTISWGAVEDFWKALPKRSAGVTCFQIRWAGVKGLLVLDP-RLPGKVICVRKESMMK 663
Query: 478 YQREGVARLRLDNVFERK-----QREVVARLDAILTDSSKV----QEALELMSSAENTNV 528
+ + + L + +V R R+V+ L+ + T +S +AL+ + + T +
Sbjct: 664 FPSQDLKELGICDVASRPLRLVLNRQVIKILEDMGTSASWFLALQNDALDFLRAVTATPL 723
Query: 529 --------------------LKEL--LNCGYKPDAEPFLSMMPQTFHASNLLELRTRARI 566
+K+L ++ Y+ D FL + + L L+ +ARI
Sbjct: 724 NTSTFLQYQDIGSAIGLPSFIKQLSKMDIDYRHDT--FLKSVVEHVVLRELRLLKHKARI 781
Query: 567 FIQNGQAMMGCLDEKGTLEYGQ----------------------GLMVVAKKPCLHPGDM 604
+ G + G +DE G L + G ++V + P LHPGD+
Sbjct: 782 PVPKGVTLFGVMDETGFLGENEVYITFDSTRGKSGERMDATLIDGPVIVTRSPALHPGDI 841
Query: 605 RVLRAVDVPALH---HMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQ 661
++ + V P H + +C+ F +G R ++ SG D DG++Y V WD P F
Sbjct: 842 QIAKMVTPPDSHPLKSLRNCIAFSQRGSRDLPSQLSGGDLDGDLYNVIWDPKAYPKHTFD 901
Query: 662 PTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDL 721
P YT L R VT D+ +F D++ +D LG+I H + A + C L
Sbjct: 902 PADYTRVVPPSLDRPVTRHDIANFFIDFMRSDILGLIATRHQILADVQEAGTSDASCIKL 961
Query: 722 VKLSSIVGDFSKTGVAAT---IPSRLRVKIYPDFM 753
++ S D+SKTG+A +P R + PDF+
Sbjct: 962 AEMHSTAVDYSKTGIAVNWRDMPRAPRSR--PDFL 994
>gi|238508311|ref|XP_002385352.1| RNA-dependent RNA polymerase, putative [Aspergillus flavus
NRRL3357]
gi|220688871|gb|EED45223.1| RNA-dependent RNA polymerase, putative [Aspergillus flavus
NRRL3357]
Length = 1107
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 157/583 (26%), Positives = 258/583 (44%), Gaps = 97/583 (16%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
V+++ VTP+++ GPE+ NR++R +P+ + F+R+ F DE+ L + +
Sbjct: 397 VHRVNVTPTRITLHGPEMEPQNRILRKFPNHHEYFIRVQFCDENGEGL--------LFNA 448
Query: 328 NGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPEL-------TA 380
N + + I+ R + + GI I + + L FS+S R +W S P + T
Sbjct: 449 NVDYKD-IFGRFIDIMTRGIQIAGRTYNFLGFSHSSLRSRAVWF--SSPFVDDNGHMQTY 505
Query: 381 ADIRERMGDFREIKNVTKYAARLGQSFA---------------------SSREALHVDSN 419
I +G F I + + AAR+GQ+F +S + V S+
Sbjct: 506 FSIVSAIGKFSHITSPARCAARIGQAFTETPFMVPLEKHGVLVSTIPDLTSPDGSRVFSD 565
Query: 420 -IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK-------------VTLRNNMFKYKS 465
+G IS E+ ++ P+ FQIR G K + +R +M K+ S
Sbjct: 566 GVGAISREVVASIWADIPLKRGNPTCFQIRLGRAKGMLAADSRLRTAVIQIRPSMIKFDS 625
Query: 466 EST-SLDI--LANSKYQ---REGVARLRLD-----NVFERKQREVVARLDAILTDSSKVQ 514
E +L+I +A+ Y V ++ D + F + Q E + RL +I + K
Sbjct: 626 EDMKNLEICNMASRPYPMVLNRQVIKILEDMGASKDWFFQMQNEELTRLQSITVSTDKTA 685
Query: 515 EALELMSSAENTNVLKELLNC-----GYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQ 569
L+ S AE + + C YK D FL + + L L+ +ARI ++
Sbjct: 686 RFLKDKSVAECIGLYRLYRQCYWTRLNYKKDG--FLRAIVEAVVLRELRLLKHKARIPVK 743
Query: 570 NGQAMMGCLDEKGTLEYGQ------------------GLMVVAKKPCLHPGDMR----VL 607
G + G +DE G L+ G+ G ++V + P LH GD++ V+
Sbjct: 744 KGMTLYGVIDETGFLQEGEVYVTFDRMEGRYAAPPGPGHILVTRSPALHCGDIQRAQNVI 803
Query: 608 RAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTP 667
D P +H +C++F KG R ++ SG D DG++Y V WD + F P Y P
Sbjct: 804 PPEDHPLRYHR-NCIVFSQKGSRDLPSKLSGGDLDGDLYHVIWDPELESVETFAPADY-P 861
Query: 668 APEKI-LARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSS 726
P I + RDV ++D+ +F +++ +D LG+I H+V A C L L S
Sbjct: 862 RPTSIDIGRDVRVDDMAAFFVEFMRSDILGMIAIRHMVMADQAASGTRDTSCRLLAGLHS 921
Query: 727 IVGDFSKTGVAATIPSRLRVKIY-PDFMEKQDKTWYESQHIVG 768
DFSKTG+ + RV Y PDF+ +T ++ +G
Sbjct: 922 KAVDFSKTGIPVNMEDMPRVNRYRPDFLAPGPQTRLYNKSKIG 964
>gi|367053924|ref|XP_003657340.1| hypothetical protein THITE_2147717 [Thielavia terrestris NRRL 8126]
gi|347004606|gb|AEO71004.1| hypothetical protein THITE_2147717 [Thielavia terrestris NRRL 8126]
Length = 1241
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 156/638 (24%), Positives = 272/638 (42%), Gaps = 120/638 (18%)
Query: 273 VTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERR 332
VTP+++ GPE+ NRV+R + D F+R F DE+ L+ + ++S
Sbjct: 441 VTPTRITLHGPELEPMNRVLRKFSDH-SYFIRAQFCDENGQDLF---FNAKVSLDA---- 492
Query: 333 TRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWM---FASRPELTAAD-IRERMG 388
+++R S L +GI + + ++ L FS+S R ++ W+ F + D I +G
Sbjct: 493 --VFDRFKSVLTDGIQVAGRVYKLLGFSHSSLRAHSAWLSAPFIHEGRVQIPDLIITGLG 550
Query: 389 DFREIKNVTKYAARLGQSFASSREALHVDSNI------------GKISAELAETVAKKCG 436
DF I++ + AAR+GQ+F+ + A+ +D N+ G++ ++ T++
Sbjct: 551 DFNRIQSPARRAARIGQAFSETPYAVDLDENMIQVLEVPDVERNGRVFSDGVGTISAGAA 610
Query: 437 YAIYT--------PSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLDILAN 475
A+Y P+ FQIR+ G K + +R +M K++S L+I
Sbjct: 611 DAVYNVIPKSKGYPTCFQIRWAGAKGMLSLDPRLEGNKICIRPSMVKFESNDRQLEICDM 670
Query: 476 SKYQREGVARLRL----------DNVFERKQREVVARLDAI---LTDSSKVQEALELMSS 522
+ V +L D F Q + RL A+ + +++ A ++ S
Sbjct: 671 ASRPIPMVLNHQLIKILEDMGAPDKWFLELQNRELQRLRAVTATVCNTASFVRAKKIGQS 730
Query: 523 AENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKG 582
+ +L + G + FL + + L L+ +ARI + G + G +DE G
Sbjct: 731 IQLHKLLLQTEAMGLDYWQDDFLRTAVEAIVLNELRLLKHKARIPVPKGITLFGIMDETG 790
Query: 583 TLEYGQ-----------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMV---DCV 622
L+ G+ G ++VA+ P LHPGD++V P H ++ +C+
Sbjct: 791 FLDEGEVYVTYDAEDRYCQPPGPGPVIVARSPALHPGDIQVAYNRIPPDGHPLIQQRNCL 850
Query: 623 LFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPP-LQFQPTAYTPAPEKILARDVTIED 681
+F + G+R ++ SG D DG+ + V WD + + F+P Y L R V D
Sbjct: 851 IFSSWGDRDLPSQLSGGDLDGDQFHVIWDPQVVASVITFEPAKYDRVSPLELDRPVVSAD 910
Query: 682 VEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAA--- 738
+ +F D++ D LG+I H + A + C L +L S DFSKTG A
Sbjct: 911 IAAFFVDFMRTDHLGVIATRHKILADQREGGTLDQDCVRLAELHSRAVDFSKTGRAVERW 970
Query: 739 TIPSRLRVKIYPDFMEKQDKT---------------------------------WYESQH 765
+P L+ + PDF+ + + +Y S+
Sbjct: 971 ELPQSLKWR--PDFLSRGPEIKIHDISAIELDQYAASRGDEDVDDVNDEGPQHRYYRSEK 1028
Query: 766 IVGNLYREVNGIAPSTTTIK-SFAKEGAMQFYDTDMEV 802
I+G LYR V+ I+ + G+ F+D + V
Sbjct: 1029 ILGKLYRAVDERKIWAEDIRMAITSRGSSSFWDQFLAV 1066
>gi|403168646|ref|XP_003328239.2| hypothetical protein PGTG_09533 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375167590|gb|EFP83820.2| hypothetical protein PGTG_09533 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1246
Score = 173 bits (439), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 158/594 (26%), Positives = 264/594 (44%), Gaps = 101/594 (17%)
Query: 271 ILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGE 330
+ +TP+++ GP+I SN ++R Y + +NFLR+S DE +L + S E
Sbjct: 437 VTITPTRLSLQGPQIEQSNSILRLY-QQTENFLRVSLADETGHRLRA--------SREVE 487
Query: 331 RRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWM----FASRPELTAADIRER 386
+ R L G+++ +KFE L +SNS +++ W + +TAA IR +
Sbjct: 488 IHHLLRNRYRPFLTKGMILCGRKFEFLGYSNSALKDHQAWFVCPFYKGDQLVTAASIRAK 547
Query: 387 MGDFREIKNV-TKYAARLGQSFASSREAL-----------HVDSN-------IGKISAEL 427
+GDF ++ + +Y AR+ Q+F S+R +L V+ N +G IS +L
Sbjct: 548 LGDFSKVIRIPARYMARIAQAFTSTRRSLTLRPSEVTRMDDVERNGSCFTDGVGTISKDL 607
Query: 428 AETVAKKCGYA----IYTPSAFQIRYGGYK-------------VTLRNNMFKYKS-ESTS 469
+ V + + + +QIR GG+K V +R +M K+ + +S +
Sbjct: 608 VDEVHRVLNVGNIRKSISSTCYQIRLGGFKGMLSLDPTLKGKVVRMRPSMDKFDAPDSLT 667
Query: 470 LDILAN-----SKYQREGVARLRLD-----NVFERKQREVVARLDAILTDSSKVQEALEL 519
LDI Y + +L D VF R Q +++ +++ + ++
Sbjct: 668 LDIAGTFTKPLVAYLNRPLIKLLEDLGIPSEVFLRLQDKIIRKVENSRSSPKLAGNLMQQ 727
Query: 520 MSSAENTNV------LKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQA 573
S + + L ELL +++ F+ L +L+ R RI +
Sbjct: 728 YSMGSGSGMPSMLHKLSELLVDDRAVESD-FIEECYDLMTVQCLRDLKYRGRIPLDKSYT 786
Query: 574 MMGCLDEKGTLE----------------YGQGLMVVAKKPCLHPGDMRVLRAVD------ 611
++G DE L Y +G V + P LHPGD+RV+ AV
Sbjct: 787 LVGVADEDNFLPPDSIYVCVQTPNSAPMYLEGSFAVTRSPSLHPGDVRVVNAVGKLDPKR 846
Query: 612 VPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQ---PTAYTPA 668
P L +V+CV FP +GER C G F ++ P + + +Y+P
Sbjct: 847 APRLSSLVNCVAFPIQGER-SLPSCLGGGDLDGDLFTVIGLPQLVPKRSKIQRAASYSPP 905
Query: 669 PEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIV 728
+ L RD TI D ++F DYI +D +G+I H+ A P+ ++ C L +L S
Sbjct: 906 EMRKLDRDCTIADGADFFLDYISSDLVGMIATRHLHIADQCPEGTLNESCIKLAELHSDA 965
Query: 729 GDFSKTGVAATIPS--RLRVKIYPDFM------EKQDKTWYESQHIVGNLYREV 774
D+ KTGV I S V++ PDFM K+ + +YES +++G L+RE+
Sbjct: 966 VDYPKTGVPVNIRSLPNPPVRMKPDFMCHEHDSSKEGEDYYESPNVLGKLFREI 1019
>gi|393247829|gb|EJD55336.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 1217
Score = 173 bits (439), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 171/618 (27%), Positives = 276/618 (44%), Gaps = 109/618 (17%)
Query: 256 SPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKL 315
+P A D L V KI++TP++V GPE SNRV+R Y + ID FLR++F D D
Sbjct: 413 TPLAAHDSPL-QVQKIIITPTRVKLSGPEPEQSNRVLRRYAENIDAFLRVTFADNDE--- 468
Query: 316 YSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASR 375
YS ++ T + V L+NGI I +KFE LA+S+S +E+++W
Sbjct: 469 YSYHYDREVDIP-----TFVKSAVGIPLKNGITIAGRKFEFLAYSSSALKEHSVWFVTPF 523
Query: 376 PE------LTAADIRERMGDF-REIKNVTKYAARLGQSFASSREALHVDS---------- 418
E TA IR+ +GDF +E + AR+ Q+F+++ ++ V+
Sbjct: 524 VEEKTGTYHTAKTIRDSLGDFEKEKYCAARLGARMAQAFSATDPSVEVEEILPLDDIPKA 583
Query: 419 ---------NIGKISAELAETVAK---------KCGYAIYTPSAFQIRYGGYK------- 453
+G +S + +E V + + G PSAFQIRY G K
Sbjct: 584 SSGPQCMSDGVGTMSRDFSEQVWEALESRRNKGRRGKNRPAPSAFQIRYKGAKGMLSVDY 643
Query: 454 ------VTLRNNMFKYKS-ESTSLDIL------ANSKYQREGVARLR----LDNVFERKQ 496
+ LR +M K++ S L+I A R + L +VF Q
Sbjct: 644 KLKGSVICLRPSMIKFEDLNSRELEIARAFNTPARMYLNRPLIVLLEGLGVKPDVFMNLQ 703
Query: 497 R-------EVVARLD--AILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSM 547
+ + LD A + +S + A L S + + L++ + + AE
Sbjct: 704 QAALEDIHKAAGSLDTAARMLESHGLGAAFRLPSLFTSLHKLRDKHSAISELLAEDDFFR 763
Query: 548 MPQTFHASNLL-ELRTRARIFIQNGQAMMGCLDEKGTLEYG-----------------QG 589
F +++ EL+ +ARI + + ++G +D L+ G QG
Sbjct: 764 RVLDFAINHIRRELKYKARIPVPDSWTLVGVVDVHDYLKEGEIFAAVKPRDAKKPFYLQG 823
Query: 590 LMVVAKKPCLHPGDMRVLRAVDVPA-----LHH-MVDCVLFPAKGERPHTNECSGSDQDG 643
M++ + P +HPGD++V+RA+ P +H + +CV+F KG+R + G D DG
Sbjct: 824 PMLITRSPVIHPGDVQVVRAIGRPPPGSPFVHEELPNCVVFSIKGKRSLASCLGGGDYDG 883
Query: 644 EIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHV 703
+IY +C + P P Y P KIL R IED+ ++ +YI +D LG I +
Sbjct: 884 DIYNICPLTELHPKSCHPPAEYAPGQRKILDRPCGIEDIADFVTEYINSDLLGHISVNWL 943
Query: 704 VYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAAT---IPSRLRVKIYPDF----MEKQ 756
+ A + C L +L S D+ KTG+ IP + + + PD+ +++
Sbjct: 944 LIADASERGIFHPDCFKLAQLHSDAVDYPKTGMPVPHKDIP-QPKQGVRPDWQASELKEH 1002
Query: 757 DKTWYESQHIVGNLYREV 774
DK Y SQ +G L+R +
Sbjct: 1003 DKDHYVSQRALGQLFRAI 1020
>gi|240282192|gb|EER45695.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus H143]
Length = 396
Score = 173 bits (438), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 115/379 (30%), Positives = 189/379 (49%), Gaps = 86/379 (22%)
Query: 333 TRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFRE 392
+ +Y RV L++GI+IGD+ +E LAF NSQ RE+ + FAS P LTAA+IR +MGD
Sbjct: 2 SEVYARVTRILQHGIIIGDRHYEFLAFGNSQFREHGAFFFASLPHLTAANIRAQMGDLNN 61
Query: 393 IKNVTKYAARLGQSFASSR----------EALHVDSN-------IGKISAELAETVAKKC 435
IK V KYAARLGQ F+++R E ++ N +G++S L + +
Sbjct: 62 IKVVAKYAARLGQCFSTTRAVTSCPVQLKEVDDIERNGYVFSDGVGRLSHFLTQMIRSDL 121
Query: 436 GYAIYT---PSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLDILANSKYQ 479
G + PSAFQ R GG K V +R + +K+ + L+I+ +S +
Sbjct: 122 GINTPSGQPPSAFQFRLGGCKGILAVSSDAHGQEVHIRKSQYKFAAAHHGLEIIRHSHFS 181
Query: 480 REGVARLRL---------DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTN--- 527
+ R + D VF K R ++ +L+ +T+ ++A+ L+ + + N
Sbjct: 182 LATLNRQLILVLSCLGVPDKVFIAKLRMMMDKLEQAMTNE---EQAVHLLQTHVDPNQMT 238
Query: 528 -VLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEY 586
+L +++ G++ EPF+S + + + + L+ +A+I I G ++GC+DE TL+
Sbjct: 239 LILADMVRDGFQGSKEPFVSSLLELWRTWQIKYLKEKAKIAIDEGAFLLGCIDETKTLKG 298
Query: 587 -------GQ------------------------------GLMVVAKKPCLHPGDMRVLRA 609
GQ G+ ++A+ P LHPGD+RV++A
Sbjct: 299 YFRSSRPGQDATYEESVACLPEIFVQVWRHSEGKYVIIEGVCILARNPSLHPGDIRVVKA 358
Query: 610 VDVPALHHMVDCVLFPAKG 628
V+ P+LHH+ D V+ P G
Sbjct: 359 VNAPSLHHLRDVVVLPQLG 377
>gi|145547505|ref|XP_001459434.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74830373|emb|CAI39057.1| RNA-dependent RNA polymerase [Paramecium tetraurelia]
gi|124427259|emb|CAK92037.1| unnamed protein product [Paramecium tetraurelia]
Length = 1331
Score = 172 bits (436), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 166/608 (27%), Positives = 275/608 (45%), Gaps = 121/608 (19%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
+ ++ +TPS F ++ ++R Y +++DNF+RL F DE+L ++
Sbjct: 513 IKRVSLTPSGYIFNLKLPEETSEIIRQYYNQLDNFIRLHFEDENLETIHG---------- 562
Query: 328 NGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA-SRPELTAADIRER 386
T Y + S L NG+ + ++F L +S SQ R + W+F +R +++ + +
Sbjct: 563 -HHYITEYYFK--SKLSNGLHLLGEQFRLLTWSASQLRGGSCWIFNYNRAQISRQNFIDS 619
Query: 387 MGDFREIK--NVTKYAARLGQSFASSRE--------------------ALHVDSNIGKIS 424
+G+F + V K AARLGQ+F+SS+ L+ D IGKIS
Sbjct: 620 IGNFNTLNMDQVAKNAARLGQNFSSSKSIDLRQIIVKTQVPDKVGDNGKLYTDG-IGKIS 678
Query: 425 AELAETVAKKCGYAIYTPSAFQIRYGGYK-------------VTLRNNMFKYK------- 464
L E + + +T SA Q+RY G K + LR +M K+
Sbjct: 679 RNLIEMI--RVEMNNHTISAIQVRYHGAKGVLLLNDDLPDNTIELRKSMIKFNPTLMNDG 736
Query: 465 SESTSLDILANSKYQ-----REGVARLRL----DNVFERKQREV---VARLDAILTDSSK 512
+ T + +L +K++ R+ + L + VF + QRE +A L A+ DSS
Sbjct: 737 NYKTMISLLDYNKFRGGYLNRQIIILLVTLGIQEEVFMQLQREYLHKIANLSAV--DSSI 794
Query: 513 VQEAL-----ELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIF 567
L EL + ++ ++N + ++ + L++LRT++ I
Sbjct: 795 YNHFLVDYNGELQGLPSIIDNIRMMINANLNENNNHYIKRVLDRLKRRGLMQLRTKSNIL 854
Query: 568 IQNGQAMMGCLDEKGTLEYGQ-----------------GLMVVAKKPCLHPGDMRVLRAV 610
+ ++G +D+ L+ G+ G ++V + PCLHPGD+R +RA+
Sbjct: 855 MDQAARVLGVVDDYDILDQGEVVCIVKQSLDVNHKYITGEIIVVRNPCLHPGDIRKVRAL 914
Query: 611 ---DVPALHHM-------VDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQF 660
++ + ++M +C++FP KG + G G+IYFV WD IP
Sbjct: 915 SENEILSRYNMKNPFAEYYNCIVFPCKGNSIPADCGGGDLD-GDIYFVSWDPKVIPKTTE 973
Query: 661 QPTAY--TPAPEKILARDV------TIED------VEEYFADYIVNDSLGIICNAHVVYA 706
P Y P ++++ + + ED + E+ +Y+ D LG I N+H+ A
Sbjct: 974 YPMNYDEEKKPAVVVSKQIQAQGYISAEDFFQENKMIEFLLEYLNFDVLGKIDNSHLAIA 1033
Query: 707 YSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHI 766
PD A +C L +L S D+ K G IP+ L K +PDFMEK D YES I
Sbjct: 1034 DGSPDYAKDPKCIRLAELHSAAVDYVKHGNKVEIPNNLVTKRWPDFMEK-DSMVYESTSI 1092
Query: 767 VGNLYREV 774
+G LYREV
Sbjct: 1093 LGKLYREV 1100
>gi|393904650|gb|EJD73758.1| RNA dependent RNA polymerase [Loa loa]
Length = 1022
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 164/625 (26%), Positives = 264/625 (42%), Gaps = 141/625 (22%)
Query: 365 RENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSR------------- 411
R+N + + A IRE++G F N+ K +R+GQ F ++
Sbjct: 2 RDNGCYFYDDGKGGQAHKIREQLGKFDRC-NIPKMMSRMGQCFTQAKRCTVTLKRHKYNK 60
Query: 412 -----------EALHVDSN-IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYKVTLR-- 457
+A ++ S+ GK+S E AE +A G PS +QIR+ G K L
Sbjct: 61 TYDVIGGRDTNQAFYIFSDGAGKVSKEFAEKIALDIGLGTSVPSCYQIRHRGIKGVLSVD 120
Query: 458 ------------NNMF---KYKSESTSLDILANSKYQREGVARLRLDNVFERK------- 495
NN+ K ++ L +L + R + +
Sbjct: 121 PSLDQRKHWAAANNVVDNNKMTNKQNDLAVLFRPSQDKFKAPRDEYIEIVKYSTPTSVCL 180
Query: 496 QREVVARLDAI------------------LTDSSKVQEALELMSSAENTNVLKEL----- 532
R +++ LD + L D Q A LMS + L EL
Sbjct: 181 NRPMISILDQVSGMQGFSVHERIRKRIHDLLDIQMTQLADMLMSEEKCREKLNELPWRVN 240
Query: 533 -----LNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFI--QNGQAMMGCLDEKGTLE 585
L G+ EPF + + L +L + +I + G++M G +DE G L+
Sbjct: 241 VSRLTLARGFALTQEPFFRSLLRANIKCTLKKLIAKVQIQVPPHFGRSMFGVMDETGQLQ 300
Query: 586 YGQ------------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDC 621
+GQ G +++ K PC+ GD+RV AVD+P LHH+VD
Sbjct: 301 WGQVFVQCTRSIWLKTPSKSAAKIILVGKVMLTKNPCIVAGDVRVFEAVDIPELHHLVDV 360
Query: 622 VLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRI-----PPLQFQPTAYTPAPEKILARD 676
V+FP G RPH +E +GSD DG+ Y V WD + + PPL F +A + KI+ +
Sbjct: 361 VVFPQHGPRPHPDEMAGSDLDGDEYSVIWDPELMFEHNEPPLDFTKSA---SDNKIVEEE 417
Query: 677 VTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGV 736
++ ++F +YI DS+G I NA +V A + S C ++ + S DF KTG
Sbjct: 418 QVDLEMRKFFVNYIKQDSIGTISNAFLVNA--DLYGITSEVCINIARKHSKAVDFPKTGN 475
Query: 737 AATIPSRL-------------RVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTT 783
A + +R R + +PDFM K + Y S +VG LYR + + +
Sbjct: 476 APSPLTRQWTQGKNGNILPPERAERWPDFMCKNHEPSYISSRLVGQLYRRIRLLDDALNL 535
Query: 784 IKSFAKEGAMQF-YDTDMEVNGFKE----VAMQFDGFKYRTEYDNKLGNLMDYYGIKTEA 838
+ A EG++ D D+E G+++ +Q D Y + + ++M+ YGI+ E
Sbjct: 536 --TAAMEGSVTIMLDPDLEYPGWEQYQNVAKIQLDS------YHSHIRSIMENYGIEDEG 587
Query: 839 EMLSRCIMEMAKSFDKKRDLEAISF 863
++ S I + ++ RD + +SF
Sbjct: 588 QLFSGFI-SVIRNRISDRDTDDMSF 611
>gi|312079416|ref|XP_003142164.1| RNA dependent RNA polymerase [Loa loa]
Length = 1486
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 167/684 (24%), Positives = 293/684 (42%), Gaps = 123/684 (17%)
Query: 261 LDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVL 320
L + + K++ TP ++ PE+ ++NRV+R + +E LR F D++ +L
Sbjct: 427 LPHNCVLIRKVMATPLRLLLLPPEVMMTNRVIRHFGEEYA--LRCVFRDDNGQRLVPKEF 484
Query: 321 SPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA------- 373
S ++ I + + TL G+ I + ++ LA+SNSQ R+ +M++
Sbjct: 485 SR--GRALQDQSLIIPDLIYRTLGTGLHIASRHYQFLAWSNSQMRDGGCYMYSDAVVNDE 542
Query: 374 --SRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN------------ 419
+ DIR MGDF K+V K +R+GQ F ++ + ++ N
Sbjct: 543 VHGQMICNVEDIRRWMGDFTASKSVPKMMSRMGQCFTQAQPTIMLEKNDWKVEDDIMGGI 602
Query: 420 --------------IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYKVTLRNNMFKYKS 465
+G+IS + A+ +A+ TPS +Q + +
Sbjct: 603 VHPETGEVFNFSDGVGRISKKYADRIAEVLDLHP-TPSCYQ---------------EDEE 646
Query: 466 ESTSLDILANSKYQREGVAR---LRLDNVFERKQREV---------------VARLDAIL 507
+ ++++ S ++R + LD V E++ R + + +L A++
Sbjct: 647 SAAEIEVVKYSMPAPVCLSRPLIMILDQVSEKQSRHLHKKICSRIHSLLELELNKLSAMM 706
Query: 508 TDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIF 567
D + E EL S +L + G EPF + H N+ ++++IF
Sbjct: 707 FDENDAAE--ELSSRMSLPIDFHQLHSSGITFTNEPFFRSLLIAIHRYNIKLHLSKSKIF 764
Query: 568 I--QNGQAMMGCLDEKGTLEYGQ--------------------GLMVVAKKPCLHPGDMR 605
+ G M G +D+ G L++GQ G ++V K PC GD+R
Sbjct: 765 LPASMGHTMYGVVDDTGLLQHGQVFIQYSPSIRYVSGKKIIYTGPVMVTKNPCHVAGDVR 824
Query: 606 VLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQ---- 661
+ AV AL H+ D ++FP G RPH +E +GSD DG+ Y V +D + Q
Sbjct: 825 MFEAVYQDALSHLCDVIVFPRYGPRPHCDEMAGSDLDGDEYTVIFDKELFFENNEQAMFF 884
Query: 662 ----PTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNR 717
PT Y P T D+ ++F Y+ DS+G + NAH++ +
Sbjct: 885 PKSIPTEYDTPP--------TTGDMIDFFLKYLSQDSIGRMSNAHLIMC--DRLGLFHEI 934
Query: 718 CPDLVKLSSIVGDFSKTGVAATIPSRLRVKI--YPDFMEKQDKTWYESQHIVGNLYREVN 775
C + + ++ DF KTGV A P L + PD+M+ K Y S+ ++G LYR+
Sbjct: 935 CDSIARKCAVAVDFPKTGVQAK-PLILHEQCDSIPDYMQNTIKPSYRSKRLLGQLYRKAQ 993
Query: 776 GIAPSTTTIKS--FAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYG 833
+ + ++ FA Q YD + K + + R EY +++ L+D YG
Sbjct: 994 KVEDISEAVQGAKFADYYDPQLYDESLFHEQPKLIQR---SLRLRNEYYSRIQQLLDEYG 1050
Query: 834 IKTEAEMLSRCIMEMAKSFDKKRD 857
I EA ++S + + + + ++D
Sbjct: 1051 ISDEASVISGHSLAIKRIVEMEKD 1074
>gi|393912446|gb|EFO21905.2| RNA dependent RNA polymerase [Loa loa]
Length = 1514
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 167/684 (24%), Positives = 293/684 (42%), Gaps = 123/684 (17%)
Query: 261 LDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVL 320
L + + K++ TP ++ PE+ ++NRV+R + +E LR F D++ +L
Sbjct: 455 LPHNCVLIRKVMATPLRLLLLPPEVMMTNRVIRHFGEEYA--LRCVFRDDNGQRLVPKEF 512
Query: 321 SPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA------- 373
S ++ I + + TL G+ I + ++ LA+SNSQ R+ +M++
Sbjct: 513 SR--GRALQDQSLIIPDLIYRTLGTGLHIASRHYQFLAWSNSQMRDGGCYMYSDAVVNDE 570
Query: 374 --SRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN------------ 419
+ DIR MGDF K+V K +R+GQ F ++ + ++ N
Sbjct: 571 VHGQMICNVEDIRRWMGDFTASKSVPKMMSRMGQCFTQAQPTIMLEKNDWKVEDDIMGGI 630
Query: 420 --------------IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYKVTLRNNMFKYKS 465
+G+IS + A+ +A+ TPS +Q + +
Sbjct: 631 VHPETGEVFNFSDGVGRISKKYADRIAEVLDLHP-TPSCYQ---------------EDEE 674
Query: 466 ESTSLDILANSKYQREGVAR---LRLDNVFERKQREV---------------VARLDAIL 507
+ ++++ S ++R + LD V E++ R + + +L A++
Sbjct: 675 SAAEIEVVKYSMPAPVCLSRPLIMILDQVSEKQSRHLHKKICSRIHSLLELELNKLSAMM 734
Query: 508 TDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIF 567
D + E EL S +L + G EPF + H N+ ++++IF
Sbjct: 735 FDENDAAE--ELSSRMSLPIDFHQLHSSGITFTNEPFFRSLLIAIHRYNIKLHLSKSKIF 792
Query: 568 I--QNGQAMMGCLDEKGTLEYGQ--------------------GLMVVAKKPCLHPGDMR 605
+ G M G +D+ G L++GQ G ++V K PC GD+R
Sbjct: 793 LPASMGHTMYGVVDDTGLLQHGQVFIQYSPSIRYVSGKKIIYTGPVMVTKNPCHVAGDVR 852
Query: 606 VLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQ---- 661
+ AV AL H+ D ++FP G RPH +E +GSD DG+ Y V +D + Q
Sbjct: 853 MFEAVYQDALSHLCDVIVFPRYGPRPHCDEMAGSDLDGDEYTVIFDKELFFENNEQAMFF 912
Query: 662 ----PTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNR 717
PT Y P T D+ ++F Y+ DS+G + NAH++ +
Sbjct: 913 PKSIPTEYDTPP--------TTGDMIDFFLKYLSQDSIGRMSNAHLIMC--DRLGLFHEI 962
Query: 718 CPDLVKLSSIVGDFSKTGVAATIPSRLRVKI--YPDFMEKQDKTWYESQHIVGNLYREVN 775
C + + ++ DF KTGV A P L + PD+M+ K Y S+ ++G LYR+
Sbjct: 963 CDSIARKCAVAVDFPKTGVQAK-PLILHEQCDSIPDYMQNTIKPSYRSKRLLGQLYRKAQ 1021
Query: 776 GIAPSTTTIKS--FAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYG 833
+ + ++ FA Q YD + K + + R EY +++ L+D YG
Sbjct: 1022 KVEDISEAVQGAKFADYYDPQLYDESLFHEQPKLIQR---SLRLRNEYYSRIQQLLDEYG 1078
Query: 834 IKTEAEMLSRCIMEMAKSFDKKRD 857
I EA ++S + + + + ++D
Sbjct: 1079 ISDEASVISGHSLAIKRIVEMEKD 1102
>gi|443899804|dbj|GAC77133.1| RNA-directed RNA polymerase QDE-1 [Pseudozyma antarctica T-34]
Length = 1455
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 164/634 (25%), Positives = 275/634 (43%), Gaps = 117/634 (18%)
Query: 267 YVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISS 326
+V + +TP+++ GP + SNRV+R +PD +F+R++F DED + V +
Sbjct: 442 HVYHVTITPTRMLLDGPFMDASNRVLRMFPDFGSHFVRVAFCDEDGDRF--PVSRHDLDG 499
Query: 327 TNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE-----LTAA 381
+ E R ER+ L+ GI I +KFE LA+S S + W + + A
Sbjct: 500 IDSESFVR--ERIGDPLKYGIAIAGRKFEALAWSGSGLGSHHCWFVTAFTDKVGKLWDAE 557
Query: 382 DIRERMGDFREI-KNVTKYAARLGQSFASSREALHVDSN--------------------- 419
IR+ +G+FR I + + ARL Q+F+++ ++ ++++
Sbjct: 558 RIRQALGNFRSIDRYPARLGARLSQAFSATSSSITIENDWVEIIPDELSNAQMPSNGPER 617
Query: 420 ----------IGKISAEL--------AETVAKKCGYAI------YTPSAFQIRYGGYK-- 453
+G+IS L ET + + + PSA Q R GG K
Sbjct: 618 DRKYYLLTDGVGQISKSLLDEIWHALCETRGMRREWRLSQQDPRRIPSAIQFRCGGAKGV 677
Query: 454 -----------VTLRNNMFKYKS-ESTSLDILANSKYQREGVARLRLDNVFER--KQREV 499
+ +R +M K+ + + L++ A+S L N E + +V
Sbjct: 678 LCLNPTLKGKKMIMRESMIKFSAPKHRELEVAAHSFSPLPARLNRPLINALEDLGVKDDV 737
Query: 500 VARLDAILTDSSK-----VQEALELMSS------AENTNVLKELLNC-GYKPD---AEPF 544
L A +S++ + A +LM S AE + + L + G +PD +
Sbjct: 738 FLNLQASAVESAQEARKSFKRASQLMGSFAMSDAAEMHKLFRRLDSVIGMRPDELDPDSI 797
Query: 545 LSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ---------------- 588
L + A+ L +L+ +ARI +Q G ++G +DE LE GQ
Sbjct: 798 LHRLCTIVIAAALGDLKRKARIPVQ-GCTLIGVVDEFNFLERGQIFAQVNDRDQDEFRIV 856
Query: 589 -GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVD----CVLFPAKGERPHTNECSGSDQDG 643
G ++V + P +HPGD+RV+ AV P H ++ V + RP + SG D DG
Sbjct: 857 EGKVMVGRSPTIHPGDVRVVSAVKPPPGHPLLQLRNVIVFSKSPFGRPLQSILSGGDLDG 916
Query: 644 EIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHV 703
+IY + D D P P Y P + LAR T ED+ ++F DY++ND +G++ H+
Sbjct: 917 DIYTIYEDKDLFPTRTESPGQYKSVPPRSLARPCTFEDLADFFVDYVINDQVGLVSTFHL 976
Query: 704 VYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAA---TIPSRLRVKIYPDFMEKQ--DK 758
A + P ++ C L +L + D+ KTG A +P PDF+ ++
Sbjct: 977 HIADTSPLHSLDPDCIKLAQLHAKAVDYRKTGQAVHRRDVPMPPFNSPRPDFLAQRPAGP 1036
Query: 759 TWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGA 792
Y S +G L+R + P +T + + A
Sbjct: 1037 GIYSSTRALGKLFRAI----PEQSTDTPYGSQPA 1066
>gi|367034442|ref|XP_003666503.1| hypothetical protein MYCTH_2071684 [Myceliophthora thermophila ATCC
42464]
gi|347013776|gb|AEO61258.1| hypothetical protein MYCTH_2071684 [Myceliophthora thermophila ATCC
42464]
Length = 1182
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 167/654 (25%), Positives = 272/654 (41%), Gaps = 134/654 (20%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
+ +++VTP+ V GPE+ NRV+R +P+ F+R F DE L+ + ++S
Sbjct: 425 IFRVVVTPTSVLLHGPELEPMNRVLRKFPNH-SYFIRAQFCDEAGNDLF---FNSKVSLD 480
Query: 328 NGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWM---FASRPELTAAD-I 383
RIY R S L +GI I + ++ L FS+S R ++ W+ F + + D I
Sbjct: 481 ------RIYNRFKSILSDGIQIAGRVYKLLGFSHSSLRAHSAWLSAPFFHQNQRHGPDFI 534
Query: 384 RERMGDFREIKNVTKYAARLGQSFASSREALHVDS--------------------NIGKI 423
E +GDF +I++ + AAR+GQ+F+ + AL +D IG I
Sbjct: 535 IETLGDFNDIRSPARRAARIGQAFSETPWALDLDEYGIQVSRIPDVERNGRVFSDGIGTI 594
Query: 424 SAELAETVAKKCGYAIYTPSAFQIRYGGYK-------------VTLRNNMFKYKSESTSL 470
S + V K + P+ QIR+ G K + +R++M K+ S L
Sbjct: 595 SHDALSAVYKVIPKSKGFPTCLQIRWAGAKGMLALDPLLEGRRICIRDSMIKFASNDKQL 654
Query: 471 DILANSKYQREGVARLRL----------DNVFERKQREVVARLDAI---------LTDSS 511
+I + V +L D F Q + RL I
Sbjct: 655 EICDMASRPMPMVLNRQLIKILEDMKAPDEWFLNLQSTELQRLRGISATVYNTASFIRMQ 714
Query: 512 KVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNG 571
KV E+++L T E + Y+ D+ FL + L L+ ++RI ++ G
Sbjct: 715 KVAESIKLHDFLRQT----EAMGIDYRQDS--FLRGAVEIILLRELRLLKHKSRIPVREG 768
Query: 572 QAMMGCLDEKGTLEYGQ------------------GLMVVAKKPCLHPGDMRVLRAVDVP 613
+ G +DE G L+ GQ G ++V + P LHPGD
Sbjct: 769 ITLFGVMDETGFLKEGQVYVTFDTEEGRYAQPPEPGPLLVTRSPALHPGDW--------- 819
Query: 614 ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ-FQPTAY--TPAPE 670
G R ++ SG D DG+++ V WD + + L +QP Y T PE
Sbjct: 820 --------------GSRDLPSQLSGGDLDGDVFHVIWDPEVVGALTTYQPADYGRTTPPE 865
Query: 671 KILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKL--SSIV 728
L R VT+ D+ +F D++ D LG+I H++ A + D C L +L S+
Sbjct: 866 --LNRPVTLADIASFFVDFMKTDQLGVIAIRHMILADQKEDGTRDQNCIALAELHSSAWR 923
Query: 729 GDFSKTGVAATIPSRLRVKIYPDFMEKQDKT-----------WYESQHIVGNLYREVNGI 777
DF G + T+ + + + D + ++D +Y+S+ I+G LYR V+
Sbjct: 924 PDFLAPGPSITVHDKSNISL-DDHVVQEDSDSEDEEGQPRYGYYKSERIIGQLYRAVDER 982
Query: 778 APSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDY 831
+ IK K F+D + K+ + ++R + LG L Y
Sbjct: 983 KIWSKDIKMIIKPRGPSFWDEMLA--ALKQRVSEIGPVEWRHRSNQALGILHAY 1034
>gi|395332591|gb|EJF64970.1| RdRP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 1236
Score = 166 bits (419), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 158/631 (25%), Positives = 271/631 (42%), Gaps = 130/631 (20%)
Query: 264 GLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQ 323
G + ++TP++V GP + SNRV+R Y D FLR+ F +E+ +
Sbjct: 417 GSVQCAHAIITPTRVLLEGPYDTQSNRVIRKYYAYRDYFLRVEFREENRMSFRWPI---- 472
Query: 324 ISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA--SRPE---L 378
NG R+ I +R L+ G+ I + F L +S S RE+T+W A + PE +
Sbjct: 473 --EVNG--RSLIQQRFGKFLKQGLEIAGRTFRFLGYSTSGLREHTVWFMADFNHPEEGPV 528
Query: 379 TAADIRERMGDF---REIKNVTKYAARLGQSFASSREALHVD------------------ 417
T IR +GDF + I+ +KYAAR+ Q+F+ + + +
Sbjct: 529 TPEKIRNDLGDFTFKKSIRQPSKYAARIAQAFSGTDPSYKITIGQWEEGVPDLGTDPYEF 588
Query: 418 -SNIGKISAELAETVAKKCGYA-------IYTPSAFQIRY-------------GGYKVTL 456
G IS EL + + A I PSAFQIR+ G K+ L
Sbjct: 589 TDGQGTISVELRDRIWDVLCEASPDKRKLILKPSAFQIRFLGCKGIVVVDEQLEGIKLRL 648
Query: 457 RNNMFKYKSEST-SLDILANSKYQREGVARL----------------RLDNVFERKQREV 499
R++M K+ E +I + + G ARL L + E+ +++V
Sbjct: 649 RDSMKKFHVEHMREAEIEIAKAFIKPGPARLCRPLIAVLEDRGIHKQHLLALQEKAKKKV 708
Query: 500 VARLDAILTDSSKVQEALELMSSAENTNVLKELLNCGY-----KPDAE-----PFLSMMP 549
V D I + +++ +L + +L+ L G KP A F++ +
Sbjct: 709 VEARDTIEQTAGLLRDH-DLGNVYGLRYILEHLRKAGVDTGKKKPRARHIMDNEFIARLI 767
Query: 550 QTFHASNLLELRTRARIFIQNGQAMMGCLDE------------------KGTL------- 584
L E++ ARI I+ ++GC DE +G +
Sbjct: 768 DYAQTHILSEIKHDARIPIEEAHQLVGCADEGPAYIAAGHDPEKVICLKEGEIFACVQQP 827
Query: 585 -----EYGQGLMVVAKKPCLHPGDMRVLRAVDVPA--------LHHMVDCVLFPAKGERP 631
Y QGL+ +++ P +HPGD++ +RA+ P ++ + V+ P+ G+R
Sbjct: 828 DSDEPIYIQGLVSISRSPHIHPGDVQRVRAIGKPPDDPDKVCFFRNLRNVVVMPSVGDRS 887
Query: 632 HTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIV 691
+ +G D DG+ + V D +P +P +Y + L RD T++D+ ++F +Y+
Sbjct: 888 LASMLAGGDVDGDEFLVIKDMTLLPTTLVEPASYVGVKPEPLDRDSTVDDICDFFMEYMQ 947
Query: 692 NDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATI---PSRLRVKI 748
+D +G++ + H+V A C L +L S D+ K GV + P +L ++
Sbjct: 948 SDVVGLVADLHLVIADQSKYGTFDEDCMRLAQLCSQAVDYPKNGVPVNVENMPRKL-IRA 1006
Query: 749 YPDFMEKQDK-----TWYESQHIVGNLYREV 774
PD+ + +D +YES +G L+R +
Sbjct: 1007 KPDWKKPEDTDYRPADYYESTRALGELFRNI 1037
>gi|67524519|ref|XP_660321.1| hypothetical protein AN2717.2 [Aspergillus nidulans FGSC A4]
gi|40743829|gb|EAA63015.1| hypothetical protein AN2717.2 [Aspergillus nidulans FGSC A4]
gi|259486372|tpe|CBF84157.1| TPA: RNA-directed RNA polymerase (Sad-1), putative (AFU_orthologue;
AFUA_3G06790) [Aspergillus nidulans FGSC A4]
Length = 1203
Score = 165 bits (418), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 148/618 (23%), Positives = 262/618 (42%), Gaps = 120/618 (19%)
Query: 265 LIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQI 324
L ++++++VTPS++ GPE NR++R +P+ + F+R+ F DE+ +Y +P+I
Sbjct: 387 LAHIHRVVVTPSRITLHGPETEPLNRILRRFPNHHEYFIRVQFCDENGEDIY---FNPRI 443
Query: 325 SSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAA--- 381
+++ I+ R + NG I + + L FS+S R + W A + +
Sbjct: 444 NNS------LIFARFKNVFANGFQIAGRTYTFLGFSHSSLRSRSAWFSAPFIDDDGSLQS 497
Query: 382 --DIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN-------------------- 419
I + +G F EI + + AAR+GQ+F+ + A+++ N
Sbjct: 498 YFTIIKAIGRFSEITSPARCAARIGQAFSETPFAVNLKENGIRVLRIPDVQVGGRVFSDG 557
Query: 420 IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK-------------VTLRNNMFKYKSE 466
+G ISA+ + + P+ FQIR GG K + +R +M K++++
Sbjct: 558 VGTISAKAVDIIHGVLPPRNGAPTCFQIRLGGAKGMLSLDPRLRGSKICIRPSMTKFQTD 617
Query: 467 -STSLDILANSK-----YQREGVARLRLDNVFERK-----QREVVARLDAILTDSSKVQE 515
+++I + + V ++ D +R+ Q + +L +
Sbjct: 618 DQVNVEICGSGSKPIPLFLNRQVIKILEDMGVDREWFMTLQELRIEQLRKATATTKNTAT 677
Query: 516 ALELMSSAENTNVLKELL---NCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQ 572
++ S A+ + + L N PFL + + L L+ +ARI + G
Sbjct: 678 FVKGQSVADCVKLYRLFLLFHNLKLDYKKIPFLRAVVEAMVLRELRLLKHKARIPVHKGI 737
Query: 573 AMMGCLDEKGTLEYGQGL-----------------MVVAKKPCLHPGDMRVLRAVDVPAL 615
+ G +DE G L + ++V + P LH GD++ V P
Sbjct: 738 TLYGVMDETGFLNENEVFVTYQAMDRLAAPPQNCRLLVTRSPALHNGDIQYPYNVVPPKG 797
Query: 616 HHMV---DCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKI 672
H + +C++F KG R ++ SG D DG++Y + WD P F P Y P
Sbjct: 798 HPLQQQRNCIVFSQKGTRDLPSQLSGGDLDGDLYNIIWDPAAAPKRVFTPANYPRNPPLD 857
Query: 673 LARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFS 732
+ R V ED+ +F +++ +D LG+I H++ A + C L +L S DFS
Sbjct: 858 IKRVVEREDMANFFVEFMQSDRLGVIATKHMILADQMELGTSHSDCKKLAQLHSTAVDFS 917
Query: 733 KTGVAATIPSRLRVKIY-----PDFM---------EKQD--------------------- 757
KTG IP RL+ + PDF+ ++Q+
Sbjct: 918 KTG----IPVRLKEMPFVNRSRPDFLAPGPLAKIHDRQNIQLEARYVHPYPDDDIDFSPV 973
Query: 758 KTWYESQHIVGNLYREVN 775
+Y S+ I+G LYR +N
Sbjct: 974 HKYYRSEKILGKLYRAIN 991
>gi|302682738|ref|XP_003031050.1| hypothetical protein SCHCODRAFT_235575 [Schizophyllum commune H4-8]
gi|300104742|gb|EFI96147.1| hypothetical protein SCHCODRAFT_235575 [Schizophyllum commune H4-8]
Length = 1178
Score = 165 bits (418), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 164/613 (26%), Positives = 260/613 (42%), Gaps = 110/613 (17%)
Query: 262 DGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSY-PDEIDNFLRLSFVDEDLGKLYSTVL 320
D + ++VTP+++ F GP SNR++RSY D+FLR+SF DED KL+
Sbjct: 382 DASIFQSLHLIVTPTRMIFQGPFPERSNRIIRSYDAKHHDSFLRVSFTDED--KLHYRF- 438
Query: 321 SPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWM----FASRP 376
+ + + + R+ L+NGI + KF+ LA+S S +E+T++ +
Sbjct: 439 -----DRDVDGSSMVRSRIERFLKNGICLAGHKFDFLAYSQSALKEHTVYFVKPFWVGIR 493
Query: 377 ELTAADIRERMGDFREIKN---VTKYAARLGQSFASSRE--------------------A 413
E+ AA I +G+F ++ +YAARL Q+F ++ A
Sbjct: 494 EVNAATIIAGIGNFEGSEDRFCPARYAARLSQAFTATDASVIVEAEEVFPVNDISTPDGA 553
Query: 414 LHVDSNIGKISAELA-ETVA------KKCGYAIYTPSAFQIRYGGYK------------- 453
H +G +S +A ET A K+ P+AFQIR+ G K
Sbjct: 554 YHFTDGVGTMSKGMASETWAELQRWRKRTKKTKNVPAAFQIRFMGSKGMLSVDHALHGRE 613
Query: 454 VTLRNNMFKYKSESTSLDILANSKYQREGVARLRLDNV------------FERKQREVVA 501
V LR++M K++S S +L+I + R G L + F R Q V
Sbjct: 614 VCLRHSMIKFESSSDTLEI--ARAFDRPGRYYLNRPLIMVMEGLGVPYESFLRHQEAAVQ 671
Query: 502 RLDAILTDSSKVQEALELMSSAENTNVLKELLN----CGYKP-DAEPFLSMMPQTFHASN 556
+ + +K + E V LLN C K DA F M +
Sbjct: 672 NVHSSSESLAKCAKMFESFGLGTAFRVPSLLLNLEKLCNVKNLDANVFYRQMIEFATHHV 731
Query: 557 LLELRTRARIFIQNGQAMMGCLD-----------------EKGTLEYGQGLMVVAKKPCL 599
L EL+ RARI I ++G D + + Y +G +++++ P +
Sbjct: 732 LRELKNRARIPIPGAYTLVGVADVHRYLGPGEIFVCIRPHDSNEVTYLEGDVLISRSPTI 791
Query: 600 HPGDMRVLRAVDVP------ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW--D 651
HPGD++V+RA+ P A + + V+F +G RP G D DG+ Y +
Sbjct: 792 HPGDVQVVRAIGRPKAGSPFAKEPLANTVVFSVRGTRPLPTMLGGGDLDGDEYNLIPLNS 851
Query: 652 HDRIPPLQ-FQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEP 710
H P + + +Y PAP K L R + DV ++ D+I D LGI+ ++ A
Sbjct: 852 HPEFRPARTVEAASYAPAPRKTLTRAADMRDVADFVIDFINYDVLGIVAIHWLIIADQSN 911
Query: 711 DKAMSNRCPDLVKLSSIVGDFSKTGVAAT---IPSRLRVKIYPDF-----MEKQDKTWYE 762
C L +L S DF K+G IP+ L + PD+ ++ +Y+
Sbjct: 912 KSIFDEDCLTLSQLHSDAVDFQKSGQPVALDRIPA-LHFRAKPDWNAPETVKANSARYYK 970
Query: 763 SQHIVGNLYREVN 775
SQ +G L R +
Sbjct: 971 SQRAIGRLARAIT 983
>gi|392571578|gb|EIW64750.1| RdRP-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 1224
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 160/627 (25%), Positives = 270/627 (43%), Gaps = 119/627 (18%)
Query: 270 KILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNG 329
++ +TP+ + GP SNRV+R Y D+FLR+ F DE+ +L +I T+
Sbjct: 423 RVTITPTTMILEGPFPERSNRVMRKYYRSQDSFLRVCFQDENRLQLR---FDREIDGTDF 479
Query: 330 ERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE---------LTA 380
R RV S L G+ +F+ LA+S S +E+ +W + A
Sbjct: 480 VNR-----RVKSVLLGGLAFPGARFDFLAYSQSALKEHAVWFVKPFRHTDDQGYTHFVDA 534
Query: 381 ADIRERMGDFRE-------IKNVTKYAARLGQSFASSREALHVDSN-------------- 419
A I +G FR I +YAAR+ Q+F ++ ++ +D+
Sbjct: 535 AAIIGSLGTFRNLTFDPELIYCPARYAARISQAFTATDASITIDAGQIIFGSDIKDASGK 594
Query: 420 ------IGKISAELAETVAKKC-------GYAIYTPSAFQIRYGGYK------------- 453
+G IS +LA+ + + P A+QIR+ G K
Sbjct: 595 REFTDGVGTISPQLAKDIWRALQENRRRGRRDRTYPRAYQIRFQGSKGMLSVDYTLPGRS 654
Query: 454 VTLRNNMFKYKSESTSLDILANSKYQREGVARLRLD------------NVFERKQ----R 497
+ +R +M K++S S +I +++ L VF+R Q R
Sbjct: 655 ILIRPSMIKFESPD-SRNIEVARAFEKPAPYYLNRPLIMLLEGLGVPYEVFQRLQDNAVR 713
Query: 498 EVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNL 557
+V A +++ L S+++ E L S T+V+ L G P F +++
Sbjct: 714 DVKAAVES-LERSARLLEGHGLGGSFRLTSVMLGLHKLGLGPLNNEVFWRQTMDFAINHV 772
Query: 558 L-ELRTRARIFIQNGQAMMG---------------CLD--EKGTLEYGQGLMVVAKKPCL 599
L EL+ RARI + G ++G C+D ++G L Y +G ++++ P +
Sbjct: 773 LRELKHRARIPVPEGWTLVGVADVHGYLEEGEIFVCIDAPDRGGLRYLEGRTLISRSPTI 832
Query: 600 HPGDMRVLRAVDVP------ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHD 653
HPGD +V+ A+ P ++ + + V+F KG+RP + G D DG+ Y V +
Sbjct: 833 HPGDAQVVHAIGRPRPGSPFSMESLRNTVVFSIKGKRPLPSCLGGGDLDGDEYNVTSMPE 892
Query: 654 RIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKA 713
+PP F Y P K++ + T+ DV E+ A+YI +D+LGII ++ A +
Sbjct: 893 LLPPRTFYAAEYKATPRKLVDHESTMVDVAEFVAEYINSDTLGIIAITWLIIADQSTEGI 952
Query: 714 MSNRCPDLVKLSSIVGDFSKTGVAATIP--SRLRVKIYPDFMEKQDKT---------WYE 762
+ C L L S D+ K+G I RL+ PD+ + + +YE
Sbjct: 953 LDPDCLKLAALHSDAVDYPKSGQPVPIQHIPRLQFARKPDWNAPETMSIDTLSESPRFYE 1012
Query: 763 SQHIVGNLYREVNGIAPSTTTIKSFAK 789
S +G LYR ++ P+ T+ A+
Sbjct: 1013 SVRAIGKLYRSID--LPALRTVDRAAR 1037
>gi|390596235|gb|EIN05637.1| RdRP-domain-containing protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 1230
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 168/656 (25%), Positives = 267/656 (40%), Gaps = 137/656 (20%)
Query: 264 GLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDED-LGKLYSTVLSP 322
G+ + VTPS + SNRV+R YP+ +F+R+ F DED L + L
Sbjct: 400 GIFDCLHVAVTPSSIIPREQYPDRSNRVIRRYPNHQQHFVRVQFCDEDYLQYRFDRDL-- 457
Query: 323 QISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRP------ 376
+G+ R +RV +R GI IG + FE LA+S S +++ +W RP
Sbjct: 458 -----DGDGFVR--DRVGGVMRTGIRIGGRAFEFLAYSQSALKDHAVWFV--RPFNLDGH 508
Query: 377 ELTAADIRERMGDF-REIKNVTKYAARLGQSFASSREALHVDSN---------------- 419
+ A IR+ +G F + I+ + Y AR+ Q+F ++ ++ V N
Sbjct: 509 RVDAEAIRQSLGTFTKVIRFPSLYGARMSQAFTATDPSITVTPNEIKRIPDIEIVDSTGQ 568
Query: 420 --------------------------IGKISAELAETVA-------KKCGYAIYTPSAFQ 446
+G IS LA+ +A K+ + P AFQ
Sbjct: 569 KRQFTDGSLPSTLSYADPIDYFRLAGVGTISLALAKDIASALLAVRKRKRGKYFKPRAFQ 628
Query: 447 IRYGGYK-------------VTLRNNMFKYKSESTSLDILANSKYQREGVARLRLDNVFE 493
IR+ G K + LR +M K++S SLDI + R G L +
Sbjct: 629 IRFAGSKGMVSVDINEEGRVLCLRPSMIKFESPD-SLDIEIAKTFDRPGKFLLNRPLIMI 687
Query: 494 RKQREVVARLDAILTDSSKVQEALELMSSAENTNVLK-ELLNCGYK-PDAE--PFLSMMP 549
+ A L D++ + S ++ +L+ L Y+ P P +P
Sbjct: 688 LEGLGAPAAAFEALQDAAVEEAEAARESLQKSARMLEVHGLGGAYRLPSVADVPHRLGLP 747
Query: 550 QTFHASN---------------------LLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ 588
++ A L EL+ ARI + + ++G D G LE G+
Sbjct: 748 RSSEARGTTQCIDDEFMDRMVAFAVNHVLRELKHHARIPVPDSWTLVGIADIHGVLEEGE 807
Query: 589 -----------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDC------VLFP 625
G ++V + P HPGD+++ RA+ P D V+F
Sbjct: 808 VFACVQPPQGGQRVYLEGNVMVTRSPVAHPGDVQMARAIGRPPPGSAYDTEPIPNTVIFS 867
Query: 626 AKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEY 685
KG RP + G D DG+++ V D P P +Y A K L RD TIEDV ++
Sbjct: 868 VKGSRPLPSALGGGDLDGDVFNVSQFADIFPRHLHPPASYEAAVRKELDRDSTIEDVMDF 927
Query: 686 FADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPS--R 743
D+I ND LG+I ++ A P+ C L +L S DF K+G + + R
Sbjct: 928 VVDFINNDRLGVIAINWLIIADQSPEGVFCTECIKLSQLHSDAVDFQKSGRSVPLGDVPR 987
Query: 744 LRVKIYPDF-----MEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQ 794
L ++ PD+ + +D +YES +G L+R ++ P ++ A+ M+
Sbjct: 988 LLMRARPDWNAPETINPEDGAYYESTKAIGKLFRRIDLPGPQEAKEQARAQRRQMK 1043
>gi|389746474|gb|EIM87654.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 976
Score = 162 bits (411), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 169/597 (28%), Positives = 256/597 (42%), Gaps = 104/597 (17%)
Query: 271 ILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGE 330
+++TP+ GP SN V+R + D F+R+SF DE+ L P +S
Sbjct: 183 LILTPTSKILEGPLPDQSNSVLRRFGHH-DCFIRVSFQDENHTPLRR---DPSGTSIQEL 238
Query: 331 RRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTL-WMFASRPE----LTAADIRE 385
RTR Y+ S + GI + + FE L +S S RE+++ +M A + +TA IR
Sbjct: 239 LRTR-YK---SAMVKGIPLAGRHFEFLGYSMSGLREHSIIFMQAFESDDGSLMTADRIRS 294
Query: 386 RMGDFREIKNVTKY-AARLGQSFASSREALHVDS-------------------NIGKISA 425
+G+F I N AAR Q+F++S ++ + S G IS
Sbjct: 295 LLGNFSHISNKPALLAARWAQAFSASDPSVTLQSAEIQRIGDKRSPSGSLFTDGCGTISE 354
Query: 426 ELAETVAK-------KCGYAIYTPSAFQIRYGGYK-------------VTLRNNMFKYK- 464
LA V K + PS FQIR GG K V LR + K++
Sbjct: 355 SLARDVWKFLQRHRRRAASMRLVPSCFQIRIGGAKGILFQDPNLIGKMVCLRPSQTKFEN 414
Query: 465 -SESTSLDILANSK------YQREGVARLRL----DNVFERKQREVVARLDAILTDSSKV 513
SE+ +LDI + S R + L +VF Q++ DA+
Sbjct: 415 DSEALTLDIASTSSRPIRMFLNRSLILLLEFLGVKPDVFMALQKDAT---DAVERARHSF 471
Query: 514 QEALELMS-----------SAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLL-ELR 561
EA +L S S N V + L+ G E + + A+++L E++
Sbjct: 472 LEAAKLFSHHGFGSSFRIASLFNNLVTQLKLDEGDLQGLECQILTKSIEYAATHVLREIK 531
Query: 562 TRARIFIQNGQAMMGCLDEKGTLEYG-----------------QGLMVVAKKPCLHPGDM 604
RARI + ++G DE G L G QG M++ + P +HPGD+
Sbjct: 532 FRARIPVHGSWTLLGVSDEWGCLREGEIFATVRDEHSGTSVEIQGPMLITRSPQIHPGDV 591
Query: 605 RVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTA 664
+++ AV P L H+ + V+F +GER + G D DG+IY + D D P +
Sbjct: 592 QMVTAVRRPELAHLTNVVVFSCEGERSLPSMLGGGDLDGDIYNLILDPDLFPTHTCEAGG 651
Query: 665 YTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKL 724
Y P K+L RD TI+DV ++ +YI D +G I H+ A P+ S C L +
Sbjct: 652 YVGLPHKVLDRDCTIDDVADFVINYIEADLVGYIAILHLRIADLSPEGPNSKDCLLLAEK 711
Query: 725 SSIVGDFSKTGVAATIPSRLRVK--IYPDFM-----EKQDKTWYESQHIVGNLYREV 774
+S DF KTG R PDF+ + ++Y S ++G L+R V
Sbjct: 712 ASHAVDFPKTGTPTNFDDLPRAPRGPKPDFLGSETVDPSSSSFYPSNKVLGRLFRNV 768
>gi|409083384|gb|EKM83741.1| hypothetical protein AGABI1DRAFT_66661 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1198
Score = 162 bits (410), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 159/623 (25%), Positives = 272/623 (43%), Gaps = 118/623 (18%)
Query: 259 VALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDE-IDNFLRLSFVDEDLGKLY- 316
V DG +++TP+ + GP SNRV+R Y + ++FLR++F D++ +L
Sbjct: 384 VPEDGSYYQSLHVIITPTTMSLQGPYPEQSNRVLRRYDSKNHESFLRVTFRDDNYLQLRF 443
Query: 317 -STVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWM---F 372
V P I +RV L+ G+ I + F LA+S S +E+++W F
Sbjct: 444 DRDVDGPSF----------IRDRVGRFLKQGLSIAGRTFTFLAYSQSALKEHSVWFVKKF 493
Query: 373 ASRP--ELTAADIRERMGDFREIKN-------VTKYAARLGQSFASS-------REALHV 416
+ P ++ A I + +G F + +YAAR+ Q+F ++ E L++
Sbjct: 494 HNAPYGDVDAKTIIDSLGTFDNLSYDPTLKLCPARYAARISQAFTATDAAVVSVEEVLNL 553
Query: 417 DS------------NIGKISAELAETV-------AKKCGYAIYTPSAFQIRY-------- 449
D +G +S +LA + +K G + P A+Q+R+
Sbjct: 554 DDIKTSDGKYVFTDGVGTMSQDLARAIWGKLRSAKRKSGRSSDYPHAYQVRFLGSKGMLS 613
Query: 450 ------GGYKVTLRNNMFKYKSESTS--LDILANSKYQREGVARLRL------------D 489
G + + LR +M K+++ES S +I + R L
Sbjct: 614 IDHTLNGAHTIALRPSMTKFEAESGSGEQEIEIARAFDRPTAYYLNRPLITLLEGLGIPT 673
Query: 490 NVFERKQREVVARLDAILTDSSKVQEALE---LMSSAENTNVLKELLNCGYKP-DAEPFL 545
NVF + Q + V + SK LE L +S + L G +PF
Sbjct: 674 NVFLKFQNDAVQETRSATLTLSKAARLLETHGLGASFRLPATMTSLAKLGLGSIHDDPFY 733
Query: 546 SMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ----------------G 589
+ Q L +L+ ARI + + ++G D LE G+ G
Sbjct: 734 GKLLQIAVHHVLRDLKHHARIPVPDAWTLVGVADVHSYLEEGEVFACVKHQTRGIIFLEG 793
Query: 590 LMVVAKKPCLHPGDMRVLRAVDVP------ALHHMVDCVLFPAKGERPHTNECSGSDQDG 643
L+++++ P +HPGD+++++A+ VP A + + V+F KG RP + G D DG
Sbjct: 794 LLLISRSPTIHPGDVQIVKAIGVPPEGSCFAREPLHNTVVFSVKGRRPLPSCLGGGDLDG 853
Query: 644 EIYFVC--WDHDRIPPLQ--FQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIIC 699
+IY V +H P + ++P Y P K+L + T++DV ++ +YI++D +GII
Sbjct: 854 DIYNVLPLKEHPDFMPRRATYKPAEYAPTQRKLLDQPSTMDDVADFVMEYIISDVVGIIA 913
Query: 700 NAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAA---TIPSRLRVKIYPDF---- 752
++ A P C L +L S D+ K+G A +IP +L+ + PD+
Sbjct: 914 INWLIIADQSPAGIEDEDCLRLAQLHSDAVDYPKSGRAVNPESIP-KLKFPMKPDWNAPE 972
Query: 753 -MEKQDKTWYESQHIVGNLYREV 774
+ +Y+S+ VG L+REV
Sbjct: 973 TINPDSANYYQSRKAVGVLFREV 995
>gi|426201566|gb|EKV51489.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
Length = 1198
Score = 162 bits (409), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 160/623 (25%), Positives = 271/623 (43%), Gaps = 118/623 (18%)
Query: 259 VALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDE-IDNFLRLSFVDEDLGKLY- 316
V DG +++TP+ + GP SNRV+R Y + ++FLR++F D++ +L
Sbjct: 384 VPEDGSYYQSLHVIITPTTMSLQGPYPEQSNRVLRRYDSKNHESFLRVTFRDDNYLQLRF 443
Query: 317 -STVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWM---F 372
V P I +RV L+ G+ I + F LA+S S +E+++W F
Sbjct: 444 DRDVDGPSF----------IRDRVGRFLKQGLSIAGRTFTFLAYSQSALKEHSVWFVKKF 493
Query: 373 ASRP--ELTAADIRERMGDFREIKN-------VTKYAARLGQSFASS-------REALHV 416
+ P ++ A I + +G F + +YAAR+ Q+F ++ E L++
Sbjct: 494 HNAPYGDVDAKTIIDSLGTFDNLSYDPTLKLCPARYAARISQAFTATDAAVVSVEEVLNL 553
Query: 417 DS------------NIGKISAELAETV-------AKKCGYAIYTPSAFQIRY-------- 449
D +G +S +LA + +K G + P A+Q+R+
Sbjct: 554 DDIKTSDGKYVFTDGVGTMSQDLARAIWGKLRSAKRKSGRSSDYPHAYQVRFLGSKGMLS 613
Query: 450 ------GGYKVTLRNNMFKYKSESTS--LDILANSKYQREGVARLRL------------D 489
G + + LR +M K+++ES S +I + R L
Sbjct: 614 IDHTLNGAHTIALRPSMTKFEAESGSGEQEIEIARAFDRPTAYYLNRPLITLLEGLGIPT 673
Query: 490 NVFERKQREVVARLDAILTDSSKVQEALE---LMSSAENTNVLKELLNCGYKP-DAEPFL 545
NVF + Q + V + SK LE L +S + L G +PF
Sbjct: 674 NVFLKFQNDAVQETRSATLTLSKAARLLETHGLGASFRLPATMTSLAKLGLGSIHDDPFY 733
Query: 546 SMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ----------------G 589
+ Q L +L+ ARI I + ++G D LE G+ G
Sbjct: 734 GKLLQIAVHHVLRDLKHHARIPIPDAWTLVGVADVHSYLEEGEVFACVKHQTRGIIFLEG 793
Query: 590 LMVVAKKPCLHPGDMRVLRAVDVP------ALHHMVDCVLFPAKGERPHTNECSGSDQDG 643
L+++++ P +HPGD+++++A+ VP A + + V+F KG RP + G D DG
Sbjct: 794 LLLISRSPTIHPGDVQIVKAIGVPPEGSCFAREPLHNTVVFSVKGRRPLPSCLGGGDLDG 853
Query: 644 EIYFVC--WDHDRIPPLQ--FQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIIC 699
+IY V +H P + ++P Y P K+L + T++DV ++ +YI++D +GII
Sbjct: 854 DIYNVLPLKEHPDFMPKRATYEPAEYAPTQRKLLDQPSTMDDVADFVMEYIISDVVGIIA 913
Query: 700 NAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAAT---IPSRLRVKIYPDF---- 752
++ A P C L +L S D+ K+G A IP +L+ + PD+
Sbjct: 914 INWLIIADQSPAGIEDEDCLRLAQLHSDAVDYPKSGRAVNPELIP-KLKFPMKPDWNAPE 972
Query: 753 -MEKQDKTWYESQHIVGNLYREV 774
+ +Y+S+ VG L+REV
Sbjct: 973 TINPDSANYYQSRKAVGVLFREV 995
>gi|407926953|gb|EKG19860.1| PhoH-like protein [Macrophomina phaseolina MS6]
Length = 1608
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 134/459 (29%), Positives = 207/459 (45%), Gaps = 71/459 (15%)
Query: 343 LRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAAR 402
L++GI + SNSQ + + +FA I E +GDF ++ V K A R
Sbjct: 17 LKSGIRFNGVHYNFYGHSNSQLKTRSCVLFADTRAAIHRKI-ESLGDFSKMTTVGKKAKR 75
Query: 403 LGQSFASSREALH-----------VDSN-------IGKISAELAETVAKKCGYAI----Y 440
+G F+S+ + V++N G IS LA ++ + A Y
Sbjct: 76 IGLLFSSAEMGVELAPERCADIPDVEANDYIFTDGCGLISPHLARSLVQSVHIAFRNVKY 135
Query: 441 TPSAFQIRYGGYKVTL--------------RNNMFKYKS-ESTSLDILANSK-----YQR 480
PS FQIRY GYK L R++M K++ + +L ++ SK Y
Sbjct: 136 IPSVFQIRYRGYKGVLSLDPSMGSQCLAKFRSSMKKFRGGDDLTLSVVDYSKPYTFGYLN 195
Query: 481 EGVA----RLRL-DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNC 535
+ V LR+ D VF RKQ E + L+++ V+ +S ++ + LL
Sbjct: 196 DEVVLLLHALRVPDEVFLRKQAEHLHFLESV--TRLDVRMCFRFLSYCNRLDLAERLLIS 253
Query: 536 GYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQGLM---- 591
G + M+ Q + R RI I + + G D KG L+ G+ ++
Sbjct: 254 GVEAVERDVRKMVGQEYERMLTKRNEQRCRILIPQSRLLFGVCDTKGLLKEGECVVRVTM 313
Query: 592 --------------VVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECS 637
+V + PCLHPGD++ RAV P L H+VDCV+FP G+RP + S
Sbjct: 314 DGDGQAQTIVGTQVLVTRNPCLHPGDLQKFRAVFHPELSHLVDCVVFPTAGKRPSADLMS 373
Query: 638 GSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGI 697
G D DG+ +FVCWD D IP + QP Y +I + +T +D +YFA Y N SLG
Sbjct: 374 GGDLDGDKFFVCWDKDLIPTVASQPAEYPGPKAQIALKPITEDDRIDYFAQY-SNMSLGR 432
Query: 698 ICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGV 736
+ N + A++ +S +C L +L S+ D ++ +
Sbjct: 433 VKN--LFLAWARLHGPLSPQCQQLNRLFSLCVDGNRIKI 469
>gi|388857678|emb|CCF48827.1| related to RNA-dependent RNA polymerase [Ustilago hordei]
Length = 1462
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 162/637 (25%), Positives = 273/637 (42%), Gaps = 128/637 (20%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
V + +TP+++ GP + SNRV+R +P+ +F+R++F DED + V +
Sbjct: 457 VYHVAITPTRMLLEGPFMDASNRVLRLFPEFGSHFVRVAFCDEDGDRF--PVSRHDLHGI 514
Query: 328 NGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE-----LTAAD 382
+ E R ER+ L++GI I +KFE LA+S S + W + + A
Sbjct: 515 DSESFVR--ERIGDPLKHGIAIAGRKFEALAWSGSGLGSHHCWFVTAFTDKDGNLWNAER 572
Query: 383 IRERMGDFREIKNVTKYAARLG----QSFASSREALHVDSN------------------- 419
IR+ +GDF + V +Y ARLG Q+F+++ + ++ +
Sbjct: 573 IRQSLGDF---QGVDRYPARLGARLSQAFSATSSTIKINDDWVKIVTDDHSNCAMPSNGP 629
Query: 420 -------------IGKISAELAETVAKK-CGY-------------AIYTPSAFQIRYGGY 452
+G+IS EL + + ++ C A PSA Q RYGG
Sbjct: 630 NEREKQFYLLTDGVGEISRELRDDIWRELCSAKNMLREWQLSQQDARRIPSAIQFRYGGA 689
Query: 453 KVTL-------------RNNMFKYKS-ESTSLDILANSKYQREGVARLRLDN-------- 490
K L R++M K+ + + L++ S + L N
Sbjct: 690 KGVLCLNPQLRGKVMKVRHSMIKFSAPKHRDLEVATTSFHPLPARLNRPLINALEDLGVP 749
Query: 491 --VFERKQREVV-----ARLDAILTDSSKVQEALELMSSAENTNVLKELLNC-GYKPD-- 540
VF Q + V AR D +S++ + L +AE + L + G PD
Sbjct: 750 ADVFVSLQNKAVESAQLARKD--FKHASQLMRSFALSDTAEVHKLFHRLDSILGITPDNL 807
Query: 541 -AEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL------------EYG 587
+ L+ + A+ L +L+ +ARI + +G ++G +DE L E G
Sbjct: 808 HHDSILNRLCTIVIAAALGDLKRKARIPV-DGCTLIGVVDEFNYLGKNEIFVQVNDKEDG 866
Query: 588 Q-----GLMVVAKKPCLHPGDMRVLRAVDVPALH---HMVDCVLFPAKGE-RPHTNECSG 638
Q G +++ + P +HPGD+R++ AV P H + + V+F RP + SG
Sbjct: 867 QYRIIEGRVMIGRSPTIHPGDVRIVTAVKPPPTHPLRQLRNVVVFNKHPHGRPLQSMLSG 926
Query: 639 SDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGII 698
+D DG+I+ + D P P Y P + LAR T ED+ ++F D+++ND +G++
Sbjct: 927 ADFDGDIFTIYEDEQLFPKQMASPGVYKNTPPRALARPCTFEDLADFFVDFVINDQIGLV 986
Query: 699 CNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAA---TIPSRLRVKIYPDFMEK 755
H+ A ++ C L +L + D+ KTG A +P PDF+ +
Sbjct: 987 STFHLHIADQSELHSLDPDCVKLAQLHAKAVDYRKTGQAVHRKDVPMPPLNSPRPDFLAQ 1046
Query: 756 Q--DKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKE 790
+ + Y S +G L+R + P TT F +
Sbjct: 1047 RPVGQGIYASSRALGKLFRAI----PEHTTDTPFGAQ 1079
>gi|409080815|gb|EKM81175.1| hypothetical protein AGABI1DRAFT_56593 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1176
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 167/626 (26%), Positives = 278/626 (44%), Gaps = 122/626 (19%)
Query: 255 TSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEI-DNFLRLSFVDEDLG 313
TSP + +D L +VTP+ + GP SNRV+R Y DNFLR+ F +ED G
Sbjct: 387 TSPLL-VDEALCQTFHAMVTPTTILLTGPFPERSNRVIRRYGKRNEDNFLRVEFREED-G 444
Query: 314 KLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA 373
Y NG R + R+ L+ IVI + F+ LA+S S RE+++W
Sbjct: 445 LQYRLD-----RDVNG--RASLRHRISPILKEKIVIAGRSFDFLAYSQSALREHSVWF-- 495
Query: 374 SRP-------ELTAADIRERMGDF------REIKNV-TKYAARLGQSFASSREAL----- 414
RP E+ AA I + +G F +E+ N +YAARL Q+F ++ A
Sbjct: 496 CRPFVDSDLGEVDAARIIQDLGTFDNLSYDKELINCPARYAARLSQAFTATEAATFRVEE 555
Query: 415 -HVDSNIGKISAE---------LAETVAKKCGYAIYT---------PSAFQIRYGGYKVT 455
+ +I + ++E A++ ++ P A+QIRY G K
Sbjct: 556 PQIRKDIKTNDKQYIFTDGCGCMSEDFAREIWQTMHPKGRDSEEDFPRAYQIRYAGSKGM 615
Query: 456 L--------------RNNMFKYKS-ESTSLDILANSK------YQREGVARLR----LDN 490
L R +M K+ + E+ ++I+ K + R + L +
Sbjct: 616 LSVDYKLKGSRTFVVRPSMIKFDAPEAKEIEIVRGIKNPTPYYFNRPLIMLLEGLGVNYD 675
Query: 491 VFERKQREVVARL-DAILTDSSKVQEALELM------SSAENTNVLKELLNCG---YKPD 540
V + Q + VA+ DA L +Q+A++L+ SS + ++ ++ G + D
Sbjct: 676 VLQHFQDKAVAKTQDATLA----LQDAIDLLENHGLGSSFRRPSTMQNIIQLGIDALQSD 731
Query: 541 AEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEK----------------GTL 584
A + +HA L +L+ ARI I + ++G DE G +
Sbjct: 732 AFYGRLLRVAVYHA--LRDLKNNARIPIPDAWTLVGVADEHNFLGKNEIFACIKKSDGEM 789
Query: 585 EYGQGLMVVAKKPCLHPGDMRVLRAVDVPA------LHHMVDCVLFPAKGERPHTNECSG 638
Y +G ++V++ PC+HPGD++V+ A+ P + + + V+F KG RP + G
Sbjct: 790 IYLEGHVLVSRSPCIHPGDVQVVSAIGRPPKGSCFEVESLQNTVVFSTKGNRPIPSCLGG 849
Query: 639 SDQDGEIY--FVCWDHDRIPPLQ-FQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSL 695
D DG+IY H + PL+ F+P YT K L + T++DV ++ +YI++D +
Sbjct: 850 GDLDGDIYNLLPLAVHKSLTPLRYFKPGKYTSGERKCLDKPSTMKDVADFVMEYIISDVI 909
Query: 696 GIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKI------Y 749
G++ N +V A C L +L S D+ KTG ++ ++K
Sbjct: 910 GLVANRWLVIADQSQFGIQDRVCLRLAQLHSDAVDYPKTGNPVSVAEIPKLKFPLPDWSA 969
Query: 750 PDFMEKQDKTWYESQHIVGNLYREVN 775
P+ ++ +Y SQ VG L R ++
Sbjct: 970 PETVDPDPVNYYPSQSAVGRLSRAID 995
>gi|340505285|gb|EGR31631.1| RNA-dependent rna polymerase, putative [Ichthyophthirius
multifiliis]
Length = 592
Score = 160 bits (406), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 109/377 (28%), Positives = 185/377 (49%), Gaps = 54/377 (14%)
Query: 454 VTLRNNMFKY----KSESTSLDILANSKYQ-----REGVARLR----LDNVFERKQREVV 500
+ LRN+M K+ + + +DIL +KY+ R+ + L+ D +F Q E +
Sbjct: 149 IILRNSMKKFDVLNEGDKLYIDILDMNKYRNGYLNRQVIILLKSLGIQDKIFRDLQNEFL 208
Query: 501 ARLDA-------------ILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSM 547
L+ + + + V++ +E + T +LK++ + +PF+
Sbjct: 209 QMLEKEGFKDANFYNLFNVDFEENLVEKNIEKLDRI--TVLLKKMYDEQLYRKKDPFIDG 266
Query: 548 MPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ----------------GLM 591
+ + L+ + I+++ ++G LDE LE Q G +
Sbjct: 267 VLNSLKYRGYYILKKKCNIYVEKSARLLGILDEFNLLEENQVYANYSKDGELFQEIEGKV 326
Query: 592 VVAKKPCLHPGDMRVLRAVDVPA------LHHMVDCVLFPAKGERPHTNECSGSDQDGEI 645
+V K PCLHPGD+R+L AV L + ++FP KG+ P + +GSD DG+
Sbjct: 327 IVVKNPCLHPGDIRILNAVSTKNDKKYNFLKEYKNVLIFPKKGKIPIAAQIAGSDLDGDQ 386
Query: 646 YFVCWDHDRIPPLQFQPTAYTPAPEKILARDVT--IEDVE--EYFADYIVNDSLGIICNA 701
YF+CWD IP + P Y K + +++ I D + ++F D+I ++LG I N+
Sbjct: 387 YFICWDERLIPNKEVIPFDYDQENNKNIQQNLQNQINDQQMLDFFIDFINCENLGKIDNS 446
Query: 702 HVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWY 761
H+ A A+ RC L KL + D++KTGV+ +P L+ K +PD+MEK DK Y
Sbjct: 447 HLAIADQSSFFALDFRCIQLAKLHAQAVDYAKTGVSPYVPLNLQSKQFPDYMEKSDKNQY 506
Query: 762 ESQHIVGNLYREVNGIA 778
ES+ ++G LYR+V G++
Sbjct: 507 ESKSVLGYLYRQVKGLS 523
>gi|390594179|gb|EIN03593.1| RdRP-domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 973
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 150/555 (27%), Positives = 238/555 (42%), Gaps = 109/555 (19%)
Query: 264 GLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQ 323
GL ++VTPS + SNRV+RS+PD +F+R+ F +ED +L
Sbjct: 428 GLFDCLHVIVTPSSIVPQEQYPDRSNRVIRSFPDHQQHFVRVQFTEEDYHQLRFD----- 482
Query: 324 ISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPEL----- 378
+GE + R+ LRNG +G + FE LA+S S +++ +W F R ++
Sbjct: 483 -RDVDGEHFVKT--RIGGVLRNGFQVGGRTFEFLAYSQSALKDHAVW-FVRRFKIDNQWI 538
Query: 379 TAADIRERMGDF-REIKNVTKYAARLGQSFASSREALHVDS------------------- 418
T IRE +G F + I + Y AR+ Q+F ++ ++ + +
Sbjct: 539 TGNTIRESLGSFDKVIYCPSLYGARMSQAFTATDPSVTITAEEIVRIPDIERRDSTGRTW 598
Query: 419 ----NIGKISAELAETVA---------KKCGYAIYTPSAFQIRYGGYK------------ 453
+G IS ELA+ + KK Y + P AFQIR G K
Sbjct: 599 QFTDGVGTISPELAQEITTALVARSRRKKGRY--FRPRAFQIRIAGSKGMVSVNHKLHGR 656
Query: 454 -VTLRNNMFKYKSESTSLDILANSKYQREGVARLRLDNV------------FERKQREVV 500
+ LR +M K++S + SLDI + + G L V F + Q V
Sbjct: 657 VLCLRPSMIKFESPN-SLDIEIAKTFDKPGKFLLNRPLVMLLEGLGVPADEFMKLQNAAV 715
Query: 501 ARLDAI---LTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTF----- 552
A LT ++++ E L ++ T+V L G + F
Sbjct: 716 EDTKAASRSLTKAAQILETHGLGTAFRLTSVFLGLERLGVDLTRRGNRFRLEDEFIHRAI 775
Query: 553 -HASN--LLELRTRARIFIQNGQAMMGCLDEKGTLEYG-----------------QGLMV 592
+A N L EL+ ARI + + ++G D G L+ G QG ++
Sbjct: 776 AYAINHVLRELKHHARIPVPSSWTLVGIADIHGVLKEGEVFACIQPSHGGEKIYLQGPVM 835
Query: 593 VAKKPCLHPGDMRVLRAVDVPA------LHHMVDCVLFPAKGERPHTNECSGSDQDGEIY 646
+ + P +HPGD+++LRAV P L + + V+F KG RP +E G D DG+++
Sbjct: 836 ITRSPVIHPGDVQMLRAVGRPPAGSIYDLEPIPNTVIFSIKGSRPTASELGGGDLDGDVF 895
Query: 647 FVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYA 706
V D P + P +Y A K+L R + DV ++ D+I ND+LG+I ++ A
Sbjct: 896 NVSQYFDIFPKKCYMPASYATAERKMLDRPSDVGDVIDFVVDFINNDNLGLIATNWLIIA 955
Query: 707 YSEPDKAMSNRCPDL 721
P+ + C L
Sbjct: 956 DQSPESIFDDACLQL 970
>gi|116200327|ref|XP_001225975.1| hypothetical protein CHGG_08319 [Chaetomium globosum CBS 148.51]
gi|88179598|gb|EAQ87066.1| hypothetical protein CHGG_08319 [Chaetomium globosum CBS 148.51]
Length = 1176
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 151/595 (25%), Positives = 248/595 (41%), Gaps = 95/595 (15%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
+ + +VTPS++ GPE NRV+R YPD F+R F DE+ L+ + ++S
Sbjct: 426 IFRAVVTPSRITLHGPEPEPMNRVLRKYPDH-SYFIRTQFCDENGQDLF---FNARVSLD 481
Query: 328 NGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIR--- 384
+ IY+R S L NGI + + ++ L FS+S R ++ W+ S P ++
Sbjct: 482 S------IYDRFKSVLSNGIQVAGRVYKLLGFSHSSLRAHSAWL--SAPFFHQGQVQIPT 533
Query: 385 ---ERMGDFREIKNVTKYAARLGQSF----------ASSREALHVDS----------NIG 421
+G+F +IK+ + AAR+GQ+F A S E +D +G
Sbjct: 534 LIVTGLGNFDKIKSPARRAARIGQAFSETPWAIDLVAHSVEVWEIDDIVRNEEVFSDGVG 593
Query: 422 KISAELAETVAKKCGYAIYTPSAFQIRYGGYK-------------VTLRNNMFKYKSEST 468
K+S ++A V + P+ FQIR G K + +R +M K+ S
Sbjct: 594 KLSQDVARLVYDVIPRSKGFPTCFQIRQAGAKGMLAIDPGLGGKVICIRPSMSKFDSTDK 653
Query: 469 SLDILANSKYQREGVARLRLDNVFE----------RKQREVVARLDAI---LTDSSKVQE 515
L+I + V +L + E Q + RL I + +++
Sbjct: 654 QLEICDMASNPMPMVLNRQLIKILEDMGAPNQWFLNLQSRELQRLRTISSTVYNTASFLR 713
Query: 516 ALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMM 575
A + S L+++ G + FL + S L L+ +ARI ++NG +
Sbjct: 714 AQRIGESIRLHKFLRQIETMGLDYRRDDFLRGAVEAVLLSELRLLKHKARIPVRNGMTLF 773
Query: 576 GCLDEKGTLEYGQGLMVVAKKPCLH---PGDMRVLRAVDVPALHHMVDCVLFPAKGERPH 632
G +DE G L+ G+ + + H PG RVL + + GER
Sbjct: 774 GIMDETGFLKEGEVYVTFDPEEDRHSQPPGPGRVLSS--------SAIASSSASGGERSP 825
Query: 633 TNECSGSDQDGEIYFVCWDHDRIPPLQ-FQPTAYTPAPEKILARDVTIEDVEEYFADYIV 691
+N+ SG D DG+++ + WD + ++ F+P AY L R VT ED+ +F D++
Sbjct: 826 SNQLSGGDLDGDVFHIIWDPAVVNAVRTFKPAAYPRVQPLELDRPVTPEDIAAFFVDFMR 885
Query: 692 NDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPD 751
D LG+I H++ A + C L +L S A TI + + +
Sbjct: 886 TDHLGVIATRHMILADQREKGTLDGDCKKLAELHS---------AAITIHDKSAIDMEEH 936
Query: 752 FMEK----------QDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFY 796
F + +Y S I+G LYR V IK + G + F+
Sbjct: 937 FAPRGDDDDDDDSGPRHQYYRSDKILGQLYRAVEEQKIWAEDIKRIVQPGNLPFW 991
>gi|393244711|gb|EJD52223.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 1372
Score = 159 bits (403), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 168/620 (27%), Positives = 275/620 (44%), Gaps = 117/620 (18%)
Query: 260 ALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTV 319
LD + + + VTPS V GP LSNRV+R YPD D F+R+ F DE+ +
Sbjct: 566 VLDRSVFLCHHVGVTPSGVRLEGPFPVLSNRVLRKYPDHQDCFIRVHFTDEEQYQFRWDR 625
Query: 320 LSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA-----S 374
++ G RV L+ G+ + + FE LA+S +E+T+W +
Sbjct: 626 EVDGVAFVRG--------RVGGVLKQGLELAGRYFEFLAYSFGALKEHTVWFVTPFIDQA 677
Query: 375 RPELTAADIRERMGDF-REIKNVTKYAARLGQSFASSREALHVD-SNIGKI--------- 423
+TA IR+ +GDF + I + + Y ARL Q+F+++ ++ V+ S + +I
Sbjct: 678 GKSVTAESIRDSLGDFSKVIYHPSLYGARLSQAFSATYPSVRVEASEVEQIPDIYDPSGE 737
Query: 424 ----------SAELAETVAKKC--GYAIY----TPSAFQIRYGG-------------YKV 454
S +LA+ + G + Y P A+QIR GG K+
Sbjct: 738 NVMSDGCAPCSTQLAKDIDDVLMEGKSRYEYNPVPKAYQIRIGGSKGMIYVDPTLPGRKL 797
Query: 455 TLRNNMFKYKSESTSLDI------LANSKYQREGVARL------RLDNVFERKQREVVAR 502
LR +M K+ + SLDI A+ Y + L RL + ++ + A
Sbjct: 798 LLRPSMNKFDAPD-SLDIEVSNIPRASHMYLNRPLVMLLEDLGVRLSTFKQLQEDTMAAD 856
Query: 503 LDAILTDSSKV--QEALELMSSAENTNVLKEL--LNCGYKPDAE-PFLSMMPQTFHAS-- 555
LDA + + L + VL EL + G + D + F S++ ++
Sbjct: 857 LDAARHIGRFIIGMNQIGLGKRFYLSYVLGELADMEFGLRDDCQGDFGSLLDDYWYHGIV 916
Query: 556 ------NLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ-----------------GLMV 592
+++ +ARI + + ++G LDE L+ GQ G ++
Sbjct: 917 KSTLWDQFRKIKYQARIRVPDSWTLVGVLDEHQILQTGQIMAYVQNEDYPNGYFLKGPVL 976
Query: 593 VAKKPCLHPGDMRVLRAVDVPA-----LHHMVDCVLFPAKGERPHTNECSGSDQDGEIYF 647
+ + P +HPGD++++ AV P + + +CV+F A G R C G F
Sbjct: 977 ICRSPVVHPGDVQMVEAVVPPDGSILDVERLPNCVIFSALGAR-SIPSCLGGGDLDGDLF 1035
Query: 648 VCWDHDRIPPLQ-FQPTAY-TPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVY 705
++ Q + P AY TP K+ R+ TI+DV ++ +YI +D LG++ H+V
Sbjct: 1036 HVSEYPYFRIKQPYLPAAYPTPERRKLKDREATIDDVADFVVEYINSDVLGLVATTHLVI 1095
Query: 706 AYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIY-----PDFM--EKQDK 758
A PD +++C L +L S D++KTG+ R+R+ Y PD+ E D
Sbjct: 1096 ADQHPDGVRAHKCMQLAELHSTAVDYAKTGIPV---PRMRIPHYEFPAKPDWKADEVDDP 1152
Query: 759 T---WYESQHIVGNLYREVN 775
T +YESQ +G+LYR V
Sbjct: 1153 TSADYYESQRALGHLYRGVG 1172
>gi|389751599|gb|EIM92672.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1228
Score = 159 bits (402), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 163/623 (26%), Positives = 270/623 (43%), Gaps = 107/623 (17%)
Query: 249 SSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFV 308
S + P SP + D G+ I VTP+ + GP SNRV+R YP + D FLR+SF+
Sbjct: 403 SMPEIPPSPFLN-DPGVFESFHIAVTPTIMALEGPLPERSNRVMRMYPKDHDCFLRVSFM 461
Query: 309 DEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENT 368
DE+ + S +G I + L G+V+ +KF L +S S + +T
Sbjct: 462 DENRLQYRSN------RDIDGP--LFINSWITRILHEGMVVAGRKFRFLGYSQSALKSHT 513
Query: 369 LWMF---ASRPELTAADIRERMGDFREIKN-------VTKYAARLGQSFASSREALHVDS 418
+W RPEL +I +G F +K +Y AR+ Q+F ++ ++ V +
Sbjct: 514 VWFVLDDPERPELRVENIIRGLGQFDNLKYDRQLIYCPARYGARISQAFTATDPSIVVRA 573
Query: 419 ------------------NIGKISAELAETVAK------KCGYAIYT--PSAFQIRYGGY 452
+G +S +A+ ++K K + T P AFQ+R+ G
Sbjct: 574 EEVFLLEDIKRGQWCFTEGVGTLSRAMAKAISKTLKDSGKRAFRRLTTHPGAFQVRFQGS 633
Query: 453 K-------------VTLRNNMFKYKSESTSLDILANSKYQREGVARLRLD---------- 489
K + +R +M K+++ SLD+ + R L
Sbjct: 634 KGVVTVDPRLRGNAICVRPSMIKFEAPE-SLDVEIAQAFDRPSKYYLNRPLIMILEALGV 692
Query: 490 --NVFERKQREVVARLDAI---LTDSSKVQEALELMSSAENTNVLKEL--LNCGYKPDAE 542
VF+R Q + ++ L +++ EA L +S ++ L L+ PD
Sbjct: 693 PYRVFDRLQTRAITQVHKASRSLRGLAEIMEAYGLGTSYRLPSIFLSLSKLHVEAPPDDS 752
Query: 543 PFLSMMPQTFHASNLLELRTRARIFI-QNGQAMMGCLDEKGTLE---------------- 585
F + T H L +L+ ARI + ++G ++G D G L
Sbjct: 753 FFHRVNDFTVHHI-LRDLKHHARIPLDRHGWTLVGVADIHGWLREKEVYAYIRLPDGEAF 811
Query: 586 YGQGLMVVAKKPCLHPGDMRVLRAVDVP-----ALHHMVDCVLFPAKGERPHTNECSGSD 640
Y +G ++V++ P +HPGD++VL AV P + + ++F +G RP G D
Sbjct: 812 YLEGRVMVSRSPTIHPGDVQVLTAVKPPHGSIYLREPLANTLVFSIQGTRPVYTGLGGGD 871
Query: 641 QDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICN 700
DG++Y V + +PP + P Y PA ++IL R TI D+ ++ ADYI +D +G++
Sbjct: 872 LDGDLYNVTTLRELMPPKNYHPANYDPAVKRILDRRSTIHDIADFVADYINSDIIGLVAI 931
Query: 701 AHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTG--VAATIPSRLRVKIYPDFME---- 754
++ A P C L +L S D+ K+G V+A L+ PD+
Sbjct: 932 NWLIIADQSPQGIFDPDCLSLCELHSNAVDYPKSGNPVSAKAIPFLKFSAKPDWNAPETV 991
Query: 755 --KQDKTWYESQHIVGNLYREVN 775
K +Y+S+ +G L+R V
Sbjct: 992 DLKDTANYYQSEKAIGRLFRAVT 1014
>gi|388851646|emb|CCF54642.1| related to RNA-directed RNA polymerase [Ustilago hordei]
Length = 1557
Score = 159 bits (401), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 151/602 (25%), Positives = 260/602 (43%), Gaps = 104/602 (17%)
Query: 271 ILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGE 330
I VTP+++ GP +SNRV+RSYP+ +F R++F +ED + +T + P + E
Sbjct: 423 IDVTPTRILLHGPHYHVSNRVIRSYPNHWHHFARVTFTNED--RDLATSIRPNYGFDDSE 480
Query: 331 RRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA-----SRPELTAADIRE 385
R I RVL+ L +G+ + + ++ LA+S+S +T+W + + A IR
Sbjct: 481 R--YIQSRVLNVLLHGLNVAGRHWDLLAWSSSSISTHTVWFVTPFVDNNGQRIDANVIRS 538
Query: 386 RMGDFRE-IKNVTKYAARLGQSFASSREALHVDSN-------------------IGKISA 425
R+GDF + IK+ Y ARL Q+F+++ + V ++ +G+IS
Sbjct: 539 RLGDFSDVIKSPALYGARLSQAFSATAHTISVPASHIHAKPDKVSEQGMPYTDGVGQISP 598
Query: 426 ELAETV-----------AKKCGYAIYTPSAFQIRYGGYK-------------VTLRNNMF 461
EL V K+ PSA Q+R GG K + +R +M
Sbjct: 599 ELMAEVWTSFLAAHGEGRKRKLLKAAAPSAIQMRLGGSKGVLAVNPRLRGKVLIIRPSMT 658
Query: 462 KYKSESTSLDILANSKYQREGVARLRLDNVFERK----------QREVVARLDAILTDSS 511
K+ S L++ S R L N E + Q E + + +D
Sbjct: 659 KFGSPHQDLEVANASTRARPAKLNRPLINALEDRGVPASAFMEIQDEAITLIGRARSDFQ 718
Query: 512 KVQEALELMSSAENTNV------LKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRAR 565
S N+ L L G + F ++ ++ A+ L +++ +AR
Sbjct: 719 AAARLCSAFSFGTGCNLRSLFQKLHSLGLGGKTVHVDSFFLVIAKSVTAAALGDMKRKAR 778
Query: 566 IFIQNGQAMMGCLDEKGTLEYGQ-------------------GLMVVAKKPCLHPGDMRV 606
I + G M+G DE L+ G+ G ++ + P + P D+ +
Sbjct: 779 IPTR-GVTMLGIADEFSLLKEGEVFAQVESVESGKVTRRILVGRNLIGRSPTVDPADVAM 837
Query: 607 LRAVDVPALHHMV---DCVLFPA-KGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQP 662
++ V P H ++ + ++F ++P G D DG++Y + D Q
Sbjct: 838 VKCVKPPPGHPLLQLRNVIVFDTCSRDQPFPRRLGGGDCDGDLYTIYEDDRLFTKAQQSA 897
Query: 663 TAYTP--APEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPD 720
+ P AP + L+RD ++ +F +++ND +G++ + H+ A + +RC
Sbjct: 898 MTFHPKIAPAE-LSRDCGSYELAFFFTQFMLNDFIGLVSSTHLRIADISELGSHDSRCKT 956
Query: 721 LVKLSSIVGDFSKTGVA---ATIPSRLRVKIYPDFM----EKQDKTWYESQHIVGNLYRE 773
L +L S DF KTG A + +P R R I PDF+ +++ K Y S +G LYR
Sbjct: 957 LARLHSQATDFKKTGYAVDRSQMP-RHREPIIPDFLAQGEKREGKLVYSSSRALGYLYRA 1015
Query: 774 VN 775
V+
Sbjct: 1016 VS 1017
>gi|328874858|gb|EGG23223.1| RNA-directed RNA polymerase [Dictyostelium fasciculatum]
Length = 2645
Score = 159 bits (401), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 167/657 (25%), Positives = 286/657 (43%), Gaps = 126/657 (19%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKL--YSTVLSPQIS 325
+ + +TP++ F P + NR +R Y DNFL + FV+E+L + YS + I
Sbjct: 1092 IKNVYITPTRTLFQKPSMYQLNRALRRYG--ADNFLLVHFVEENLDEKVEYSKFQTKSIE 1149
Query: 326 STNGERRTRIYERVLSTLRNGIVI-GDKKFETLAFSNSQERENTLWMFASRPELTAADIR 384
+ L GI+I G +F + S SQ R ++ W +R ++ IR
Sbjct: 1150 NI---------------LLEGIMIEGIGRFHYIGNSASQARSSSCWFTNNRNDIDT--IR 1192
Query: 385 ERMGDFR---EIKNVTKYAARLGQSFASSREALHVDSN-------------------IGK 422
++ D I N KY LG F+ + ++ + +N IG
Sbjct: 1193 NQLVDLSINTGIANPRKYLRSLGLVFSGTTPSIIIPNNQYNENLDDVRNDEAIFTEGIGF 1252
Query: 423 ISAELAETVAKKCGYAIYTPSAFQIRYGGYK------------VTLRNNMFKYKSEST-- 468
I LA + + + + T S++QIR GG K + LRN+M K+ + ++
Sbjct: 1253 IGKNLANKINAENSFPLGT-SSYQIRIGGNKGVVSVHHSIENGIYLRNSMKKFNTNNSEM 1311
Query: 469 --SLDILANSKYQREGVARLRL---------DNVFERKQREVVARLDAILTDSSKVQEAL 517
+L+I++ + + + R + D +F E + +L IL DSS + L
Sbjct: 1312 NRTLEIISIASKKNCTLNRQIINLFGGLGVPDRLFLMLVMECLEKLALILQDSSMARSEL 1371
Query: 518 ---ELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAM 574
+ + +E T KELL +P + + T + L + I I+N + +
Sbjct: 1372 KNIDFFNQSEPTE--KELL-------YDPLIRRILHTLYKKQLTKYLDFCFIPIKNARTL 1422
Query: 575 MGCLDEKGTLEYGQGLM----------------VVAKKPCLHPGDMRVLRAVDVPALHHM 618
+G +DE GTLE Q + V K PCLHPGD+++ VD LHHM
Sbjct: 1423 LGVIDETGTLEENQVFVRITADNNEIIVIQSNVAVVKNPCLHPGDVQLAMGVDNQLLHHM 1482
Query: 619 VDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPL-QFQPTAYTPAPEKILARDV 677
+D V+F KG P ++CSGSD DG+ YFVC+D D + + Q + P+ +++
Sbjct: 1483 LDVVVFSQKGTIPLFSKCSGSDLDGDRYFVCFDTDMVNTIVQHKDFCNLPSKSDSTVKEI 1542
Query: 678 TIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVA 737
+ V + F + LG I +H+ A S+ + +L DF KT +
Sbjct: 1543 NKDTVIQQFIENTQKGRLGQIALSHL--AISDYKSPTDDLAIELAIEHFKEVDFVKTNIH 1600
Query: 738 ATIPSR-LRV----KIYPDFMEKQ---DKTWYESQHIVGNLYREVNGIAPSTTTIKSFAK 789
T+P + L + + YP FM+ +K + ES ++G +Y + + S ++ +
Sbjct: 1601 GTVPEQALELTNYGRRYPMFMKASVGANKEFSESTKVLGKIYNQCS----SLVSVAQYLP 1656
Query: 790 EGAMQFYDTDMEVNGFKEVA----MQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLS 842
+ + D + V+G+++ QF +K Y L Y I+ E +++S
Sbjct: 1657 DSRV---DESILVSGYEDYVEDARHQFKNYKKEIRY------LRSKYNIEKEEDIIS 1704
>gi|403417878|emb|CCM04578.1| predicted protein [Fibroporia radiculosa]
Length = 1258
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 182/666 (27%), Positives = 276/666 (41%), Gaps = 160/666 (24%)
Query: 262 DGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLS 321
D + + + TP+++ GP SN VVR Y + D F+R+ FVDE+ L
Sbjct: 440 DKNIFTCHHVTFTPTRMILEGPSRLQSNSVVREYWENRDRFIRVDFVDENRSHFR---LD 496
Query: 322 PQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFAS------- 374
++ + + +RV + L+ G I + FE L +SNS ++ W
Sbjct: 497 QEVDGA-----SFLQDRVGTILKGGFQIASRVFELLGYSNSSLGDHVFWFVNPFERVSRN 551
Query: 375 ------RPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREAL-------------- 414
R +TA +IR R+GD EI KYAAR+GQ+F S+ ++
Sbjct: 552 ANGQEVREFITAEEIRRRLGDLSEIALPAKYAARIGQAFTSTYFSVQVVEDEWEEIEEIL 611
Query: 415 --------HVDSNIGKISAELAETV--------AKKCGYAIYTPSAFQIRYGGYK----- 453
HVD +G+IS +LA + ++ Y + PSAFQIR+ GYK
Sbjct: 612 EDRDNPKSHVD-GLGRISQDLANAIWEGMCEEEPERRAYGV-KPSAFQIRFIGYKGVVAV 669
Query: 454 --------VTLRNNMFKYKSES-----------------TSLDILA------NSKYQREG 482
+ LR M K+K SL I + R+
Sbjct: 670 DRQLKGRKLCLRPEMRKFKPHRCDGCRAKLFCAHLNNPIQSLHIAEAFHGPRRAYLTRDP 729
Query: 483 VARLR----LDNVFERKQREVVARLDAILTDSSKVQEALELMSSAEN----------TNV 528
V L D VFE Q E R + DSS ++ LEL+ S +
Sbjct: 730 VTILEDREVRDEVFENLQDEA-KRTTYMARDSS--EKYLELLQSHHLGFQYRLPFLLQRL 786
Query: 529 LKELLNCGYKPDAE-----PFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGT 583
L L+CG + AE PF + + L +L+TRARI + N ++G DE
Sbjct: 787 LDIGLDCGSQILAENVLNDPFFLGLREYGIQHVLRDLKTRARIPVPNSYLLVGVADEGPA 846
Query: 584 ----------LEYGQ-----------------GLMVVAKKPCLHPGDMRVLRAV---DVP 613
L+ GQ GL + + P +HPGD++ + A+ DVP
Sbjct: 847 YTKQGHSVYQLKNGQIFACVQESPDAKPIWLKGLCFITRSPTVHPGDVQRVTAIGKPDVP 906
Query: 614 -----ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPA 668
HM + V+ P G R + G D DG++Y+V +P L P AY
Sbjct: 907 DGQICLFEHMKNVVVLPTVGCRSLASCLGGGDLDGDLYYVFHYSQLLPVLHVPPAAY--P 964
Query: 669 PEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIV 728
EK R T +DV ++ +Y+ +D LG++ +V A + ++ RC +L +L S
Sbjct: 965 DEKPPPRQFTFDDVCDFIVEYMHSDVLGLLSVRRLVIADQSQEGSLDKRCIELARLCSDA 1024
Query: 729 GDFSKTGVAA---TIPSRLRVKIYPDFMEKQDKT------WYESQHIVGNLYREV--NGI 777
D+ KTG A T P +L + PD+ +D Y+S +G LYR + N +
Sbjct: 1025 VDYPKTGRAVNSRTAPKKL-LPYSPDWHADEDNISDPLADCYQSDRALGKLYRRIKLNPL 1083
Query: 778 APSTTT 783
PST +
Sbjct: 1084 PPSTRS 1089
>gi|426197730|gb|EKV47657.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
Length = 1151
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 171/640 (26%), Positives = 282/640 (44%), Gaps = 114/640 (17%)
Query: 237 VSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYP 296
V+ L + + K V TSP + +D L +VTP+ + GP SNRV+R Y
Sbjct: 344 VADLLKTFSKRVMKLGNSTSPLL-VDEALCQTFHAMVTPTTILLTGPFPERSNRVIRRYG 402
Query: 297 DEI-DNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFE 355
DNFLR+ F +ED G Y NG R + R+ L+ IVI + F+
Sbjct: 403 KRNEDNFLRVEFREED-GLQYRLD-----RDVNG--RASLRHRISPILKEKIVIAGRSFD 454
Query: 356 TLAFSNSQERENTLWMFASRP-------ELTAADIRERMGDF------REIKNV-TKYAA 401
LA+S S RE+++W RP E+ AA I + +G F +E+ N +YAA
Sbjct: 455 FLAYSQSALREHSVWF--CRPFVDSDLGEVDAARIIQDLGTFDNLSYDKELINCPARYAA 512
Query: 402 RLGQSFASSREAL------HVDSNIGKISAE---------LAETVAKKCGYAIYT----- 441
RL Q+F ++ A + +I + ++E A++ ++
Sbjct: 513 RLSQAFTATEAATFRVEEPQIRKDIKTNDKQYIFTDGCGCMSEDFAREIWQTMHPKGRDS 572
Query: 442 ----PSAFQIRYGGYKVTL--------------RNNMFKYKS-ESTSLDILANSK----- 477
P A+QIRY G K L R +M K+ + E+ ++I+ K
Sbjct: 573 EEDFPRAYQIRYAGSKGMLSVDYKLKGSRSFAVRPSMIKFDAPEAKEIEIVRGIKNPTPY 632
Query: 478 -YQREGVARLR----LDNVFERKQREVVARL-DAI--LTDSSKVQEALELMSSAENTNVL 529
+ R + L +V + Q + VA+ DA L D+ + E L SS + +
Sbjct: 633 YFNRPLIMLLEGLGVNYDVLQHFQDKAVAKTQDATRALQDAIILLENHGLGSSFRLASTM 692
Query: 530 KELLNCG---YKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEK----- 581
+ ++ G + DA + +HA L +L+ ARI I + ++G DE
Sbjct: 693 QNIIKLGIDALQSDAFYGRLLRVAVYHA--LRDLKNNARIPIPDAWTLVGVADEHNFLGK 750
Query: 582 -----------GTLEYGQGLMVVAKKPCLHPGDMRVLRAVDVPA------LHHMVDCVLF 624
G + Y +G ++V++ PC+HPGD++V+ A+ P + + + V+F
Sbjct: 751 NEIFACIKKSDGEMIYLEGHVLVSRSPCIHPGDVQVVSAIGKPPKGSCFEVQSLQNTVVF 810
Query: 625 PAKGERPHTNECSGSDQDGEIY--FVCWDHDRIPPLQ-FQPTAYTPAPEKILARDVTIED 681
KG RP + G D DG+IY H + PL+ F+P YT K L + T++D
Sbjct: 811 STKGIRPIPSCLGGGDLDGDIYNLLPLAVHKSLTPLRYFKPGKYTSGERKCLDKPSTMKD 870
Query: 682 VEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIP 741
V ++ +YI++D +G++ N +V A C L +L S D+ KTG ++
Sbjct: 871 VADFVMEYIISDVIGLVANRWLVIADQSQFGIQDRVCLRLAQLHSDAVDYPKTGNPVSVA 930
Query: 742 SRLRVKI------YPDFMEKQDKTWYESQHIVGNLYREVN 775
++K P+ ++ +Y SQ VG L R ++
Sbjct: 931 EIPKLKFPLPDWSAPETVDPDPVNYYPSQSAVGRLSRAID 970
>gi|154273921|ref|XP_001537812.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150415420|gb|EDN10773.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 652
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/398 (26%), Positives = 181/398 (45%), Gaps = 94/398 (23%)
Query: 514 QEALELMSSAENTN----VLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQ 569
++A+ L+ + + N +L +++ G++ EPF+S + + + + L+ +A+I I
Sbjct: 5 EQAVHLLQTHVDPNQMTLILADMVRDGFQGSKEPFVSSILELWRTWQIKYLKEKAKIAID 64
Query: 570 NGQAMMGCLDEKGTLE-------YGQ------------------------------GLMV 592
G ++GC+DE TL+ GQ G+ +
Sbjct: 65 EGAFLLGCIDETKTLKGYFRSSRPGQDATYEESVACLPEIFVQVWRHSEGKYVIIEGVCI 124
Query: 593 VAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDH 652
+A+ P LHPGD+RV++AV+ P+LHH+ D V+ P G+R ++ CSG D DG+ Y V WD
Sbjct: 125 LARNPSLHPGDIRVVKAVNAPSLHHLRDVVVLPQTGDRDISSMCSGGDLDGDDYVVIWDQ 184
Query: 653 DRIPPLQFQ-PTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPD 711
D +P F P Y ++L RDVT++D+ +++ +Y+ ND L I AH+ A +
Sbjct: 185 DILPTDWFHNPMDYAAPKPEVLDRDVTVDDITKFYVNYMQNDRLPQIALAHLALADYMEE 244
Query: 712 KAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLY 771
+ +C L L S D++K+G+ + L+ + +P FME++ + Y
Sbjct: 245 GVKNEKCLQLAALHSAAVDYNKSGIPVKLTRDLKPRRWPHFMERKMRNKY---------- 294
Query: 772 REVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDY 831
D N +T+YD + +M
Sbjct: 295 --------------------------ADFATN-------------LKTQYDADMRRIMAQ 315
Query: 832 YGIKTEAEMLSRCIM---EMAKSFDKKRDLEAISFSVR 866
+ IKTE E+ S ++ EM K + D+ IS S+R
Sbjct: 316 HEIKTELEVWSTFVLSHSEMTKDYKFHEDIGRISSSLR 353
>gi|409045817|gb|EKM55297.1| hypothetical protein PHACADRAFT_173398 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1215
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 158/638 (24%), Positives = 275/638 (43%), Gaps = 121/638 (18%)
Query: 258 AVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYS 317
AV L G + + +TP+++ GP + SNRV+R Y D+F+R+ F DED +
Sbjct: 400 AVELSSGNFMCHHVTITPTRMLLEGPYVIQSNRVIRQYRGYEDHFIRIDFRDEDRLQYRW 459
Query: 318 TVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMF----- 372
T+G ++ + RV L+ G + +KFE LA+S+S RE+ +W
Sbjct: 460 D------RDTDG--KSLLENRVGGLLKGGFSLATRKFEFLAYSSSALREHAVWFVNPFYH 511
Query: 373 ASRPELTAADIRERMGDFREIKNV-TKYAARLGQSFASSREALHVDSN------------ 419
+ + A IR +GDF + N +KYAAR+ Q+F ++ ++ + +
Sbjct: 512 QEKGWIDAEYIRSSLGDFSAVINCPSKYAARIAQAFTATDPSVEITRDQWEQMDDLGEEP 571
Query: 420 ------IGKISAELAETVAKKCGYAI-------YTPSAFQIRYGGYK------------- 453
+G IS+EL + + + A PSA+QIR+ GYK
Sbjct: 572 YLFTDGVGTISSELGDMIWEALCSARDDSYRKNIKPSAYQIRFLGYKGMVAVDGRLKGVK 631
Query: 454 VTLRNNMFKYK--SESTSLDILANSKYQREGVARLRLDNVFERKQREVV---------AR 502
+ LR +M K++ +E T+ +A + ++R L + + R V+ A
Sbjct: 632 MRLRPSMNKFEGPAEETATIEIARA-FERPNTCYLNRPLIMVLEDRGVIKQAFLELQEAA 690
Query: 503 LDAILTDSSKVQEALEL-----MSSAENTNVLKELLNC-GYKPDAE---------PFLSM 547
+ AI S V + +L + + + + +LLN G + E PF
Sbjct: 691 VAAIHMSSDSVMQCRQLFREHSLGGSYRLSYVWQLLNAVGLGMEHEENIRVVLQDPFFER 750
Query: 548 MPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGT-----------LEYGQ-------- 588
+ Q L ++ ARI + ++G DE LE GQ
Sbjct: 751 LVQFAKNDVLRSIKHNARIPVLGSYLLVGVADEGPAYEAEGCENVFKLEEGQIYACVQKS 810
Query: 589 ---------GLMVVAKKPCLHPGDMRVLRAVDVPA-------LHHMVDCVLFPAKGERPH 632
G + +++ P +HPGD++ + A+ P ++ + V+ P+ G R
Sbjct: 811 VDEELIWIEGSVTISRSPVVHPGDVQRVTAIGKPPDDGRPCFFRNLKNVVVLPSTGGRSL 870
Query: 633 TNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVN 692
+ G D DG++Y + W+ +P P Y P ++ L R IED+ ++ +YI +
Sbjct: 871 ASMLGGGDLDGDLYSIIWESTLLPTEHQGPAKYEPVGKRELDRPSRIEDICDFIIEYIDS 930
Query: 693 DSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPS--RLRVKIYP 750
D LG++ + H++ A + +C L +L S D+ K GV I + R + P
Sbjct: 931 DVLGLLSDRHLIIAGELREGTRDAKCIRLAELCSQAVDYPKNGVPVDIQNSPRWLIPYKP 990
Query: 751 DFMEKQDKT-----WYESQHIVGNLYREVNGIAPSTTT 783
D+ + +D +YES +G+L+R V + P T
Sbjct: 991 DWKKAEDNAPRKTDYYESDRALGDLFRNVQLLEPPKTV 1028
>gi|389746475|gb|EIM87655.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1279
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 161/595 (27%), Positives = 262/595 (44%), Gaps = 98/595 (16%)
Query: 271 ILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGE 330
+++TP GP + SN V+R + D FLRLSF DE+ L P ++ E
Sbjct: 482 LVLTPLSRILEGPLLDQSNSVLRRFGHH-DCFLRLSFQDENHTPLRR---DPTSGTSIAE 537
Query: 331 RRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFAS----RPEL-TAADIRE 385
+ R S + +GI I + F+ L +S S +++++ +S R EL TA IR
Sbjct: 538 L---LRTRFRSVMVDGIRIAGRYFQFLGYSMSGLKDHSIMFMSSFHDERGELMTAEGIRR 594
Query: 386 RMGDFREIKNVTKY-AARLGQSFASSREALHVDSN-------------------IGKISA 425
+G F I N AAR Q+F++S ++ +D N G IS
Sbjct: 595 TLGSFNHISNKPALLAARWSQAFSASDPSVTLDPNEIRRIDDRRSPSGSLFTDGCGTISP 654
Query: 426 ELAETVAK-------KCGYAIYTPSAFQIRYGGYK---------------VTLRNNMFKY 463
LA V K + PS FQIR GG K V LR + K+
Sbjct: 655 LLARDVWKFLQHRRRRAAKMRSVPSCFQIRIGGAKGVLFQDPTLAGLGRVVCLRPSQTKF 714
Query: 464 KS-ESTSLDILANSK------YQREGVARLRL----DNVFERKQREVVARLDAI---LTD 509
++ E+ +LDI + S R + L D+VF Q++ A ++ TD
Sbjct: 715 ENPEALTLDIASTSARPIRMFLNRPLILLLEFLGVQDDVFLSLQKDATAAVERARDSFTD 774
Query: 510 SSKVQEALELMSSAENTNVLKELLNCGYKPDA---EPFLSMMPQT--FHASNLL-ELRTR 563
++K+ SS ++ L++ D+ E ++ +T + A+++L E++ R
Sbjct: 775 AAKLFSHHGFGSSFRLASLFNNLISELKLDDSDLQELGCQLITRTVEYAATHVLREIKFR 834
Query: 564 ARIFIQNGQAMMGCLDEKGTLEYGQ-----------------GLMVVAKKPCLHPGDMRV 606
ARI + ++G DE L G+ G +++ + P +HPGD++
Sbjct: 835 ARIPVHGSWTLLGVSDEWSCLREGEIYATVRDERTGTYVPIEGRVLITRSPQIHPGDVQF 894
Query: 607 LRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYT 666
+ AV P L H+ + V+F +G+R + G D DG+IY + + + P AY
Sbjct: 895 VNAVRHPKLEHLNNVVVFSCEGDRSLPSMLGGGDLDGDIYNLILNPNLFPTRTSVAGAYE 954
Query: 667 PAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSS 726
P P K+ TIED+ ++ DYI D +G I H+ A +P + C L + +S
Sbjct: 955 PLPHKVTPHPCTIEDIADFVIDYIEADLVGYISILHLRIADLDPKGPSCDECLLLAEKAS 1014
Query: 727 IVGDFSKTGVAATIPSRLRV-KIYPDFMEKQ------DKTWYESQHIVGNLYREV 774
DF KTG + R ++ PDF+ + + ++Y S ++G LYR V
Sbjct: 1015 HAVDFQKTGTPVNFDNLPRAGRLRPDFLAGEVVEPSAESSFYPSDKVLGVLYRNV 1069
>gi|395334239|gb|EJF66615.1| RdRP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 1225
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 181/712 (25%), Positives = 301/712 (42%), Gaps = 143/712 (20%)
Query: 176 LELPSRALIPKALKDFFHYKESLVQF-TLLPGFVFSCNSDLNQDGKHALEMLFHLREC-- 232
L RA L+DF + ++L + PG S + LN + LF E
Sbjct: 347 LRAKGRAYTAALLRDFTSHAKALYWYGEAQPGAEPSLQTHLNASWSDPVTHLFQSVEAQF 406
Query: 233 CYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIY-VNKILVTPSKVYFCGPEISLSNRV 291
Y PV+ + A A+D + + +TP+ + GP SNRV
Sbjct: 407 VYKPVA-----------------AHAPAVDAPATFQCFHVSITPTTMILEGPFPERSNRV 449
Query: 292 VRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGD 351
+R Y + FLR+SF DE+ + +G R+ I R LR+GI I
Sbjct: 450 IRMYWQNEECFLRVSFQDENRLQFRFD------REVDG--RSFINRRFRGVLRDGITIAG 501
Query: 352 KKFETLAFSNSQERENTLWM---FASRPE------LTAADIRERMGDFREIKNVT----- 397
F LA+S S +E+ +W F R + A I E +G+FR + T
Sbjct: 502 AHFSFLAYSQSALKEHAVWFVKPFRHRDGHGVECYVDATTIIENLGNFRVSFDTTLIHCP 561
Query: 398 -KYAARLGQSFASSREALHVDSN--------------------IGKISAELAETV----- 431
+YAAR+ Q+F ++ ++ VD + +G IS ELA +
Sbjct: 562 ARYAARIAQAFTATDASITVDVDQIERGEDLEDATGNYCFTDGVGTISRELAREIWRSVR 621
Query: 432 --AKKCGYAIYTPSAFQIRY-------------GGYKVTLRNNMFKYKSESTSLDILANS 476
++ P A+Q+R+ G K+ +R +M K+++ +S +A +
Sbjct: 622 ERGRRSRPDRTYPRAYQVRFQGSKGMLSVDHTLSGRKIVIRPSMTKFEANQSSTIEVARA 681
Query: 477 KYQREGVARLR---------LDNVFERKQREVVARLDAILTD----------SSKVQEAL 517
+ R G L L +E Q A DA + D S+++ EA
Sbjct: 682 -FDRPGPYFLNRPLIMLLEGLGVSYETLQ----ALQDAAVYDAQQSVTSLERSARLLEAH 736
Query: 518 ELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLL-ELRTRARIFI-------- 568
L S T+ + L G P + F +++L EL+ ARI +
Sbjct: 737 GLGVSFRLTSAMLGLHKLGLDPLNDDVFWRQAMDFAINHVLRELKHHARIPVPSLDSWTL 796
Query: 569 ----------QNGQAMMGCLDE--KGTLEYGQGLMVVAKKPCLHPGDMRVLRAVDVP--- 613
Q+G+ + C+D + L Y +G ++++ P +HPGD++V+ A+ P
Sbjct: 797 VGVADVHGELQDGE-IFACIDSPTESRLIYLEGPCLISRSPTIHPGDVQVVHAIGRPPAG 855
Query: 614 ---ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPE 670
A + + V+F +GERP + G D DG++Y V D +PP + P +Y PA +
Sbjct: 856 SALAKESLRNAVVFSIQGERPLPSCLGGGDLDGDLYNVTTRRDLLPPRTYTPASYEPAAK 915
Query: 671 KILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGD 730
K++ + T+EDV ++ A+YI +D+LGII + A D + C L L S D
Sbjct: 916 KLVEHECTMEDVADFVAEYISSDTLGIIATTWLKIADQSADGILDQDCLKLAALHSHAVD 975
Query: 731 FSKTG--VAATIPSRLRVKIYPDF-----MEKQDKTWYESQHIVGNLYREVN 775
+ K+G V +L+ K PD+ + + ++ +Y S +G L+R ++
Sbjct: 976 YPKSGQPVPVNQIPKLKSKTKPDWSAPETISRGNEDYYTSMKAIGKLFRSID 1027
>gi|336388940|gb|EGO30084.1| RNA-directed RNA polymerase [Serpula lacrymans var. lacrymans S7.9]
Length = 1246
Score = 157 bits (397), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 141/481 (29%), Positives = 206/481 (42%), Gaps = 85/481 (17%)
Query: 337 ERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMF-ASRPELTAADIRERMGDFREIKN 395
E ++ ++ G+ + ++ SNSQ R T + A+ E A I ++GDF I N
Sbjct: 66 EYIVRLMKAGLFLNGLQYRFYHHSNSQLRSRTCFFREANSDEELDARIY-KLGDFGRIMN 124
Query: 396 VTKYAARLGQSFASSREALHVD------------------SNIGKISAELAETVAKKCGY 437
+ K A R+G F+++ L +D G ++ A V+K
Sbjct: 125 IAKRAKRIGLLFSAAEVDLQLDPKWVTDIDDITVGDIVFSDGCGLMAKRFAVQVSKAKSI 184
Query: 438 AI----YTPSAFQIRYGGYK----------------VTLRNNMFKYKS-ESTSLDILANS 476
YTP+ FQIRY GYK V R +M K+ + E S ++ S
Sbjct: 185 IFRNQRYTPTVFQIRYLGYKGVLMLDPKLDEEKKFLVKFRKSMKKFSTTEDKSFSVVGYS 244
Query: 477 KYQREGVARLRLDNV------------FERKQREVVARLDAILTDSSKVQEALELMSSAE 524
Q RL D V F+ KQR ++ D+ K A++ +SS
Sbjct: 245 --QPYSFGRLNNDIVVLLSSLGISDEKFQAKQRAYFEWIEGASHDAVK---AIDFLSSLG 299
Query: 525 NTNVLKELLNCGY-KPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGT 583
++ + LL G P + + A L R R R+ I + + G D G
Sbjct: 300 KYSLAERLLLDGMDSPAVSKEIRALQNAEVAQFLKNNRPRTRMIIHKSRLLYGVCDPYGV 359
Query: 584 LEYGQ-----------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPA 626
L+ GQ G ++V + PCLHPGD LRAVD P+L H++DC++F
Sbjct: 360 LKEGQVQIRITSSRGGATTPINGDILVVRNPCLHPGDCLKLRAVDHPSLSHLLDCIVFAT 419
Query: 627 ---KGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVE 683
G +P SG D DG+ +FVCWD D +P L +P Y P E++ +DVT D+
Sbjct: 420 VGRPGHQPAPAMSSGGDLDGDKFFVCWDPDLVPSLVHEPYDYPPNKERV-GKDVTRMDLA 478
Query: 684 EYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSR 743
YFA Y N SL + H + S PD A+ +C +L L S D G IP R
Sbjct: 479 TYFASY-NNMSLAKVSALHQKWVRSSPDGALCVQCQELNALHSQSVD----GGRIKIPDR 533
Query: 744 L 744
L
Sbjct: 534 L 534
>gi|336364173|gb|EGN92535.1| hypothetical protein SERLA73DRAFT_99065 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1660
Score = 157 bits (396), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 141/481 (29%), Positives = 206/481 (42%), Gaps = 85/481 (17%)
Query: 337 ERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMF-ASRPELTAADIRERMGDFREIKN 395
E ++ ++ G+ + ++ SNSQ R T + A+ E A I ++GDF I N
Sbjct: 91 EYIVRLMKAGLFLNGLQYRFYHHSNSQLRSRTCFFREANSDEELDARIY-KLGDFGRIMN 149
Query: 396 VTKYAARLGQSFASSREALHVD------------------SNIGKISAELAETVAKKCGY 437
+ K A R+G F+++ L +D G ++ A V+K
Sbjct: 150 IAKRAKRIGLLFSAAEVDLQLDPKWVTDIDDITVGDIVFSDGCGLMAKRFAVQVSKAKSI 209
Query: 438 AI----YTPSAFQIRYGGYK----------------VTLRNNMFKYKS-ESTSLDILANS 476
YTP+ FQIRY GYK V R +M K+ + E S ++ S
Sbjct: 210 IFRNQRYTPTVFQIRYLGYKGVLMLDPKLDEEKKFLVKFRKSMKKFSTTEDKSFSVVGYS 269
Query: 477 KYQREGVARLRLDNV------------FERKQREVVARLDAILTDSSKVQEALELMSSAE 524
Q RL D V F+ KQR ++ D+ K A++ +SS
Sbjct: 270 --QPYSFGRLNNDIVVLLSSLGISDEKFQAKQRAYFEWIEGASHDAVK---AIDFLSSLG 324
Query: 525 NTNVLKELLNCGY-KPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGT 583
++ + LL G P + + A L R R R+ I + + G D G
Sbjct: 325 KYSLAERLLLDGMDSPAVSKEIRALQNAEVAQFLKNNRPRTRMIIHKSRLLYGVCDPYGV 384
Query: 584 LEYGQ-----------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPA 626
L+ GQ G ++V + PCLHPGD LRAVD P+L H++DC++F
Sbjct: 385 LKEGQVQIRITSSRGGATTPINGDILVVRNPCLHPGDCLKLRAVDHPSLSHLLDCIVFAT 444
Query: 627 ---KGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVE 683
G +P SG D DG+ +FVCWD D +P L +P Y P E++ +DVT D+
Sbjct: 445 VGRPGHQPAPAMSSGGDLDGDKFFVCWDPDLVPSLVHEPYDYPPNKERV-GKDVTRMDLA 503
Query: 684 EYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSR 743
YFA Y N SL + H + S PD A+ +C +L L S D G IP R
Sbjct: 504 TYFASY-NNMSLAKVSALHQKWVRSSPDGALCVQCQELNALHSQSVD----GGRIKIPDR 558
Query: 744 L 744
L
Sbjct: 559 L 559
>gi|299753212|ref|XP_002911846.1| calcium:hydrogen antiporter [Coprinopsis cinerea okayama7#130]
gi|298410195|gb|EFI28352.1| calcium:hydrogen antiporter [Coprinopsis cinerea okayama7#130]
Length = 1681
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 180/757 (23%), Positives = 307/757 (40%), Gaps = 142/757 (18%)
Query: 260 ALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTV 319
+LD G + TP++V GP + SNR++R Y D FLR+ F DED +
Sbjct: 880 SLDRGTFPCCHVTFTPTRVLLEGPCPTQSNRIIRKYAGFEDKFLRVDFRDEDRLQYRWD- 938
Query: 320 LSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE-- 377
+G R +RV + L+ G + + FE LA+S+S RE+ +W + +
Sbjct: 939 -----REVDGSVFVR--DRVGTVLKLGFELAGRTFEFLAYSSSALREHAVWFMSPFKKDG 991
Query: 378 --LTAADIRERMGDFRE---IKNVTKYAARLGQSFASSREALHV---------------- 416
+ A IR +GDF+ +K + YAARL Q+F ++ ++ +
Sbjct: 992 VIVDAESIRNSVGDFKGTELLKRPSMYAARLAQAFTATDPSVKIRRGEWEDVDDLGEKPY 1051
Query: 417 --DSNIGKISAELAETVAKKCGYA-IYTPSAFQIRYGGYK-----------------VTL 456
+G IS+ LA+ + G P AFQIR+ GYK + L
Sbjct: 1052 LFTDGVGTISSALADRIWAAVGRKNQRRPDAFQIRFLGYKGMVSVDKELDNHPHGIQMRL 1111
Query: 457 RNNMFKYKSESTSLDILA---------NSKYQREGVARLRLDNVFERKQREVVARLDAI- 506
R +M K++++ D N+ Y + L L+++ RK E RL +
Sbjct: 1112 RPSMRKFENKGEEEDAEIEIAQSFSSPNAAYLNRPLVML-LEDLGARK--EDFLRLQNLE 1168
Query: 507 LTDSSKVQEALELMSSAENTN----------VLKELLNCGYKPDAE--------PFLSMM 548
+ D+ + E+LE + + +L++L N G + PFL ++
Sbjct: 1169 IADACTIDESLEQFQKFMSGHGLGRPFGFQYLLRKLWNLGLDLSSNKKGSSIDTPFLHLL 1228
Query: 549 PQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLE----------------------- 585
L +++ ARI I + ++G DE E
Sbjct: 1229 RSVAINDVLRDIKHSARIKIPDSYLLVGIADEGPAYEKRGYKNVYSLREGNIYACIQRHE 1288
Query: 586 -----YGQGLMVVAKKPCLHPGDMRVLRAVDVP------ALHHMVDCVLFPAKGERPHTN 634
Y QG + +++ P H GD++ + A+ P A + + V+ P+ G+R +
Sbjct: 1289 DDEPTYIQGTVSISRSPVAHRGDVQRVYAIGEPPAGMFCAFRGLRNVVVLPSVGDRSLAS 1348
Query: 635 ECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDS 694
G D DG+++ V +P F+P+AY A K L RD T+ED+ ++ +YI +D
Sbjct: 1349 CLGGGDVDGDMFSVITCDALLPSETFEPSAYESAGTKTLDRDSTVEDICDFVVEYINSDV 1408
Query: 695 LGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPS----RLRVKIYP 750
LG++ + ++ A D C L +L S D+ K G+ + S R ++ P
Sbjct: 1409 LGLLSDRLLIIADQSKDGFSDEACLALAELCSQAVDYPKQGIPVDLDSNDLPRTLIRCKP 1468
Query: 751 DF-----MEKQDKTWYESQHIVGNLYREV--------------NGIAPSTTTIKSFAKEG 791
D+ + ++ +Y S +G LYR V N P T I
Sbjct: 1469 DWHAAEVVSPRETDYYRSTRALGFLYRAVELKPITEEEKKLAPNKFPPLTDAISRALIPY 1528
Query: 792 AMQFYDTDMEVNG-FKEVAMQFDGFKYRTEYDNKLGNLMDYYGIK-TEAEMLSRCIMEMA 849
+ + NG F E+ F + Y L + G+K EAE+++ I+
Sbjct: 1529 VKTYLGAAVNPNGQFAEIDKIFQRYVNELNYICITHTLSNTPGVKLLEAEVVAGTILAKC 1588
Query: 850 KSFDKKRD-LEAISFSVRSLRKEARAWFNKKKNDSDS 885
+ D + + +L K+ + F + N DS
Sbjct: 1589 AQKRMRSDRIYRMRLHSETLVKDVQKDFKGRTNSPDS 1625
>gi|443895352|dbj|GAC72698.1| RNA-directed RNA polymerase QDE-1 [Pseudozyma antarctica T-34]
Length = 1496
Score = 156 bits (394), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 149/602 (24%), Positives = 259/602 (43%), Gaps = 102/602 (16%)
Query: 271 ILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGE 330
I VTP++V GP +SNRV+R+Y D +F R++F +ED G +T + E
Sbjct: 389 IDVTPTRVLLSGPHTHVSNRVIRAYSDHWHHFARVTFSNEDRGG--ATTIKANYGFVESE 446
Query: 331 RRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA-----SRPELTAADIRE 385
R I RVL L+ GI + + +E LA+S+S +T+W + A IR
Sbjct: 447 RY--IQSRVLKILQRGINVAGRHWEMLAWSSSSMSAHTVWFVTPFRDKDGTHVHAEVIRR 504
Query: 386 RMGDFREI-KNVTKYAARLGQSFASSREALHVDSN--------------------IGKIS 424
+GDF ++ + Y ARL Q+F+++ + VDS+ +G+IS
Sbjct: 505 ELGDFTDVARYPAMYGARLSQAFSATARTVEVDSSLILHMPDIETPDRKMAYTDGVGQIS 564
Query: 425 AELAETV------------AKKCGYAIYTPSAFQIRYGGYK-------------VTLRNN 459
EL V K+ + PSA QIR GG+K + LR +
Sbjct: 565 PELMAEVWEKYVTSALGEPRKRKFFKAAAPSAIQIRIGGHKGCLTVNPRLQGKQLALRPS 624
Query: 460 MFKYKSESTSLDILANSKYQREGVARLRLDNVFERK----------QREVVARLDAILT- 508
M K+ S L++ +S L N + + Q+E +A + T
Sbjct: 625 MSKFVSPHQDLEVANSSARCLSAKLNRPLINALDDRGVPATALLDIQKEAIAHIGRARTH 684
Query: 509 --DSSKVQEALELMSSAENTNVLKELLNCGYKPDA---EPFLSMMPQTFHASNLLELRTR 563
+++K+ A + + + ++L G + + F ++ + A+ L +++ +
Sbjct: 685 FDETAKLCSAYSFGTGCDLHILFQKLHKHGMGATSIHSDSFFLVLAKAVIAAALGDMKRK 744
Query: 564 ARIFIQNGQAMMGCLDEKGTLEYGQ-------------------GLMVVAKKPCLHPGDM 604
ARI ++ G ++G DE L+ G+ G ++ + P + PGD+
Sbjct: 745 ARIPVR-GVTLIGVADEFAFLKEGEVFAQVEHVDLGQVRRRVLVGTKLIGRSPTVDPGDI 803
Query: 605 RVLRAVDVPALHHMV---DCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRI--PPLQ 659
+++ V P H ++ + V+F + G + ++ +R+ P Q
Sbjct: 804 AMVKCVRPPPGHPLLQLRNVVVFNTCTRQEPLPRRLGGGDLDGDLYTIYEDERLFLPTPQ 863
Query: 660 FQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCP 719
T + L R D+ +FAD+++ND +G++ + H+ A + ++ RC
Sbjct: 864 PGTTFHAKTRPMELDRYCNSTDLANFFADFMLNDFIGLVSHMHLRIADASKAGSLDGRCK 923
Query: 720 DLVKLSSIVGDFSKTGVAA--TIPSRLRVKIYPDFM----EKQDKTWYESQHIVGNLYRE 773
L L S+ DF KTGVA T R+ I PDF+ +Q Y S ++G LYR
Sbjct: 924 QLAMLHSLATDFRKTGVAVKRTQLPRMDEPIIPDFLAQGEPRQGGLTYPSTRVLGYLYRA 983
Query: 774 VN 775
V+
Sbjct: 984 VS 985
>gi|340521489|gb|EGR51723.1| Hypothetical protein TRIREDRAFT_55637 [Trichoderma reesei QM6a]
Length = 1734
Score = 155 bits (391), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 137/454 (30%), Positives = 201/454 (44%), Gaps = 87/454 (19%)
Query: 343 LRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAAR 402
L+ GI I + SNSQ + T ++ A+ E + + E +GDF ++K V K A R
Sbjct: 124 LKAGISIHGVHYNFYGHSNSQLKSRTCYLCAASKEDISRKV-EALGDFTKMKTVAKKAKR 182
Query: 403 LGQSFASSREALHVDSNI------------------GKISAELAETVAKKCGYAI----Y 440
+G F+ +R A+ VD + G I+ LA+ ++++ Y
Sbjct: 183 IGLLFSVARAAMQVDPKMVQDIPDIEVGDFIFTDGCGLIAPHLAKELSRRTRIVFRNMRY 242
Query: 441 TPSAFQIRYGGYK--VTLRNNMFK---------YKSESTSLDILANSKYQREGVARLRLD 489
TPS FQIRY GYK VTL M K + + D L+ S Y
Sbjct: 243 TPSVFQIRYRGYKGVVTLDPTMAKGVPWLKMRKSMKKFSGGDDLSFSPY----------- 291
Query: 490 NVFERKQREVVARLDAI----LTDSSKVQEALELMSSAENTNVL--KELLNCGYKPDAE- 542
VF EV+ LDA+ T K QE E ++ A + ++ + L + DAE
Sbjct: 292 -VFGHLNDEVIVLLDALGISRQTLLRKQQEHFEFLAQAYHNPIVAFRILCHLNMPEDAEK 350
Query: 543 ----------PFLSMMPQTFHASNLLELR--TRARIFIQNGQAMMGCLDEKGTLEYGQGL 590
P ++ + + + +L R R RI I + + G D G L+ GQ
Sbjct: 351 VIIDSLDAVRPTINRLVKAEY-DKMLNKRDEQRCRILIPKSRLLFGVCDAWGVLKPGQCA 409
Query: 591 M------------------VVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPH 632
+ +V + PCLHPGD++ L V+ P L H+VDC++FP G RP
Sbjct: 410 VKVTMDGDGQPYALKGTKVLVTRNPCLHPGDLQKLDVVERPELAHLVDCIVFPTTGRRPT 469
Query: 633 TNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVN 692
+ SG D DG+ +FV WD D IP Q Y E + +T ED YFA Y N
Sbjct: 470 ADMMSGGDLDGDTFFVTWDPDIIPTTVSQAAHYPGVREPLRFSPITDEDRLVYFAKY-TN 528
Query: 693 DSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSS 726
SLG + N ++ +A + AMS C +L +L S
Sbjct: 529 VSLGRVKNLYLKWARAT--GAMSAECQELNRLFS 560
>gi|320586448|gb|EFW99118.1| RNA-directed RNA polymerase [Grosmannia clavigera kw1407]
Length = 2177
Score = 154 bits (390), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 113/377 (29%), Positives = 179/377 (47%), Gaps = 56/377 (14%)
Query: 255 TSPAVALDGG-LIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDE-DL 312
T P LD +Y+ K +VTP+ + F P + NRV+R Y + D FLR+ F DE +
Sbjct: 1087 TPPEATLDKDRAVYIRKAIVTPTTIVFSTPALEAGNRVLRHYREHHDRFLRVQFTDELHI 1146
Query: 313 GKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMF 372
G+L P + T+ + R L+NGI +G + F+ LAF NSQ REN + F
Sbjct: 1147 GRLSG---GPDTTRTD-----ECFTRAFRALKNGIRVGGRHFKFLAFGNSQLRENGAYFF 1198
Query: 373 ASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSRE---------ALHV------- 416
A +T D+R+ MGDF IK V KYAARLGQ +++R H+
Sbjct: 1199 APTELVTCQDVRDWMGDFSNIKTVAKYAARLGQCLSTTRPVPTFGVPTTVQHIPDVEGGG 1258
Query: 417 ---DSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK--------------VTLRNN 459
+GKIS A +A + PSAFQ R GG K V +R +
Sbjct: 1259 FCFTDGVGKISKWWARVIASHLRVS-EVPSAFQFRMGGCKGVLVVWPDVPSGQVVQVRPS 1317
Query: 460 MFKYKS--ESTSLDIL-----ANSKYQREGVARLRL----DNVFERKQREVVARLDAILT 508
K+ + ++ L+I+ A + ++ + L +VF E + +DA++
Sbjct: 1318 QEKFPTSDKANVLEIVRCSETATATLNQQTILLLTCLGIPTSVFLELLNEELTGIDAVMK 1377
Query: 509 DSSK-VQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIF 567
D+ K V + + + T+ L +++ G+ EPF+ + Q + + L L+ +ARI
Sbjct: 1378 DARKAVDQLMVRVDQNHTTHALADMVKAGFMDSDEPFVWALLQLWRSWTLKALKEKARIT 1437
Query: 568 IQNGQAMMGCLDEKGTL 584
++ ++GC+DE TL
Sbjct: 1438 VERSAFVLGCVDETDTL 1454
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 130/257 (50%), Gaps = 12/257 (4%)
Query: 589 GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFV 648
GL +V + P LHPGD+RV+ AVDVPALHH+ D V+FP G+R CSG D DG+ YFV
Sbjct: 1519 GLCLVGRNPSLHPGDLRVVEAVDVPALHHLRDVVVFPRVGDRDIPGMCSGGDLDGDDYFV 1578
Query: 649 CWDHDRIPP---LQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVY 705
WD +PP ++ Y + E + R VT+ + +F ++ +D+L I +H +
Sbjct: 1579 FWDKRLLPPHRVWNYEAMNYEASREPDVDR-VTLRHLISFFVQHMKHDTLPRIALSHRGF 1637
Query: 706 AYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQH 765
A AM RC +L +L S D++KTG+ A +P RL K +P +M + K Y S
Sbjct: 1638 ADQLDGGAMHPRCLELAQLHSQAVDYAKTGIPALLPHRLNPKQWPHWMNRIQKHTYRSPT 1697
Query: 766 IVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKL 825
+G +Y V + K F + D D++ + + +T+YD L
Sbjct: 1698 ALGKIYDRVKVDSFEPAYDKPFDVRILHHYPDLDID--------LLRRARRIKTQYDLAL 1749
Query: 826 GNLMDYYGIKTEAEMLS 842
M I +E EM +
Sbjct: 1750 RRAMAQKEIGSEFEMWT 1766
>gi|70608336|gb|AAZ04410.1| putative RNA-dependent RNA polymerase SDE1/SGS2/RDR6 [Nicotiana
benthamiana]
Length = 172
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 98/163 (60%), Gaps = 32/163 (19%)
Query: 521 SSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDE 580
S AE N +L+ G+KP +EP L M + AS L +LR +ARIF+ +G+ +MGCLDE
Sbjct: 10 SCAEAGNTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDE 69
Query: 581 KGTLEYGQ--------------------------------GLMVVAKKPCLHPGDMRVLR 608
G LE GQ GL+++AK PCLHPGD+R+L
Sbjct: 70 LGELEQGQCFIQVSSPSLESCFVKHGPNFSDIKKNLQVIKGLVIIAKNPCLHPGDVRILE 129
Query: 609 AVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWD 651
AVDVP LHH+ DC++FP KG+RPH ++ SGSD DG++YFV WD
Sbjct: 130 AVDVPGLHHLYDCLVFPQKGDRPHPDQASGSDLDGDLYFVTWD 172
>gi|358384596|gb|EHK22193.1| hypothetical protein TRIVIDRAFT_149633 [Trichoderma virens Gv29-8]
Length = 1731
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 139/453 (30%), Positives = 200/453 (44%), Gaps = 85/453 (18%)
Query: 343 LRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAAR 402
LR GI I + SNSQ + T ++ A+ E A + E +GDF ++K V K A R
Sbjct: 124 LRAGITIQGVHYNFYGHSNSQLKSRTCYLCAASKEQIAQKV-EALGDFTKMKTVAKKAKR 182
Query: 403 LGQSFASSREALHVD------------------SNIGKISAELAETVAKKCGYAI----Y 440
+G F+ +R A+ VD G I+ LA ++++ A Y
Sbjct: 183 IGLLFSVARAAMQVDPKKVEDIPDIEVGDFIFTDGCGLIAPGLASQLSRRIKIAFRNMRY 242
Query: 441 TPSAFQIRYGGYK--VTLRNNMFK---------YKSESTSLDILANSKYQREGVARLRLD 489
TPS FQIRY GYK VTL M K + + D L+ S Y
Sbjct: 243 TPSVFQIRYRGYKGVVTLDPTMAKGGPWLKMRKSMKKFSGGDDLSFSPY----------- 291
Query: 490 NVFERKQREVVARLDAI----LTDSSKVQEALELMSSA-ENTNVLKELLNCGYKPDA--- 541
VF EV+ LDA+ T K QE + ++ A ++ V +L P+
Sbjct: 292 -VFGNLNDEVIVLLDALGISRQTLLRKQQEHFDFLAKAYKDPRVAFRILCHLNMPEVAER 350
Query: 542 ---EPFLSMMPQTFHASN-----LLELR--TRARIFIQNGQAMMGCLDEKGTLEYGQ--- 588
+ ++ P+ N +L R + RI I + + G D G L+ GQ
Sbjct: 351 VIIDSLDAVRPKINKLINAEYDKMLNKRDEQKCRILIPKSRLLFGVCDAWGVLKPGQCAV 410
Query: 589 --------------GLMV-VAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHT 633
G+ V V + PCLHPGD++ L V+ P L H+VDC++FP G RP
Sbjct: 411 KVTMDGDGQPYALKGMKVLVTRNPCLHPGDLQKLDVVERPELAHLVDCIVFPTTGRRPTA 470
Query: 634 NECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVND 693
+ SG D DG+ +FV WD D IP Q Y E + +T +D YFA Y N
Sbjct: 471 DMMSGGDLDGDTFFVTWDPDIIPSTISQAAHYPGVREPLRFSPITDDDRLLYFAKY-TNA 529
Query: 694 SLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSS 726
SLG + N ++ +A + AMS+ C +L +L S
Sbjct: 530 SLGRVKNLYLKWARAS--NAMSSECQELNRLFS 560
>gi|395334238|gb|EJF66614.1| RdRP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 1233
Score = 154 bits (388), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 166/615 (26%), Positives = 269/615 (43%), Gaps = 120/615 (19%)
Query: 270 KILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNG 329
++ VTP+ + GP SNRV+R Y D FLR+SF DE+ L + +
Sbjct: 434 RLTVTPTTMILEGPFPERSNRVMRKYYHSQDCFLRVSFQDENR-------LQYRFNREVD 486
Query: 330 ERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWM---FASRPE------LTA 380
RR I RV L GI I F LA+S S +E+ +W F R + A
Sbjct: 487 GRRF-IDLRVKRVLLEGIRIAGAHFRFLAYSQSALKEHAVWFVKPFRYRDSHQNVHFVDA 545
Query: 381 ADIRERMGDFREI-------KNVTKYAARLGQSFASSREALHV----------------- 416
I + +G F + + +YAAR+ Q+F ++ A+ +
Sbjct: 546 TTIIQSLGQFHNLPFDPTLMRCPARYAARISQAFTATDAAVSMAVGVVYMGRDIKGRNGK 605
Query: 417 ---DSNIGKISAELAETVAK-------KCGYAIYTPSAFQIRYGG--------YKVT--- 455
+G +S LAE++ K K P AFQ+R+ G YK+T
Sbjct: 606 DVFTDGVGTLSPMLAESIWKALQSRSGKTRKGKTYPRAFQVRFQGSKGMLSVDYKLTDNA 665
Query: 456 --LRNNMFKYKSESTSLDILANSKYQREGVARLRLD------------NVFERKQREVVA 501
LR +M K+ +++ +A + + R G L F++ Q + V
Sbjct: 666 IMLRPSMIKFDDSKSAIVEVARA-FDRPGAYYLNRPLIMLLEGLGVPYTTFKKLQDDAVR 724
Query: 502 RLDAILTD---SSKVQEALELMSSAENTNVLKELLNCGYKP-DAEPFLSMMPQTFHASNL 557
+T S+K+ E L S V+ L G P D + F M F +++
Sbjct: 725 DAQTSVTSLKLSAKLFEDHGLGVSFRIAPVMLGLHKLGLGPLDDDIFWRQM-MDFAVNHV 783
Query: 558 L-ELRTRARIFI--QNGQAMMG---------------CLD---EKGTLEYGQGLMVVAKK 596
L EL+ RARI + + ++G C+D EKG L + +G VV++
Sbjct: 784 LRELKHRARIPVPGTDSWTLVGVADIHRELKEGEIFVCVDSPKEKG-LIFLEGPCVVSRS 842
Query: 597 PCLHPGDMRVLRAVDVPA------LHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
P +HPGD+++ A+ P + + + V+F G RP + G D DG+ Y V
Sbjct: 843 PTIHPGDVQIATAIGRPRPGSHYDVESLRNTVVFSTTGSRPLPSCLGGGDLDGDEYNVTT 902
Query: 651 DHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYA--YS 708
D +P + P +Y PAP K++ + T++DV E+ A++I +D+LGII ++ A +
Sbjct: 903 RPDLMPKRTYDPASYEPAPRKMVDHESTMDDVAEFVAEFISSDTLGIIATNWLITADQTN 962
Query: 709 EPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPS--RLRVKIYPDFME------KQDKTW 760
+ D ++ C L +L S+ D++KTG I R ++I PD+ K ++
Sbjct: 963 DTDGILNPDCLRLAELHSLAVDYAKTGQPVPIEQIPRPPLRIKPDWNAPETHSGKNSLSF 1022
Query: 761 YESQHIVGNLYREVN 775
Y S VG L+R ++
Sbjct: 1023 YRSMTAVGKLFRAID 1037
>gi|395333779|gb|EJF66156.1| RdRP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 1220
Score = 152 bits (385), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 157/640 (24%), Positives = 278/640 (43%), Gaps = 128/640 (20%)
Query: 260 ALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTV 319
A D G + TP+++ GP +S SNRV+R + D+FLR+ F DED
Sbjct: 413 ARDSGKFKCYHVTFTPTRILLEGPYVSQSNRVIRQFAGYEDHFLRVDFRDEDR---LQYR 469
Query: 320 LSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMF-----AS 374
+ ++ T T + ERV TL++G +G + FE LA+S S RE+ +W +
Sbjct: 470 WAREVDGT-----TLLEERVGGTLKHGFDLGGRHFEFLAYSQSALREHAVWFMNPFDHPT 524
Query: 375 RPELTAADIRERMGDFREIKNV-TKYAARLGQSFASSREALHVDSNIGKISAELAE---- 429
R + IR+ +GDF ++ + +KYAARL Q+F ++ ++ + + + +++ E
Sbjct: 525 RGYVDGQRIRDSLGDFSKVIDAPSKYAARLAQAFTATDPSVSISHDQCEEMSDMGEEPYL 584
Query: 430 ------TVAKKCGYAIY---------------TPSAFQIRYGGYK-------------VT 455
T++ K G I+ PSA+QIRY GYK +
Sbjct: 585 FTDGVGTISPKLGDMIWEALCTAKEDLRRHERKPSAYQIRYLGYKGMVGIDERLEGVKMR 644
Query: 456 LRNNMFKYKS---ESTSLDIL-----ANSKYQREGVARLRLDN-----VFERKQREVVAR 502
LR +M K+ + + ++I + Y + + D VF++ Q + V
Sbjct: 645 LRPSMNKFDALDKDVAPIEIARWFDNPGTSYLNRSLVMILEDRGVDKAVFQKLQDKAV-- 702
Query: 503 LDAILTDSSKVQEALELMS------SAENTNVLKEL--LNCGYKPDAEPFLSMMPQTF-- 552
+A++T S + + L+ S +L+ L + G K + E + TF
Sbjct: 703 -EAVVTASDSIDGTVTLLKTHNIGLSLGLPYILRGLKAIGMGMK-EKEVTTGTLNDTFLY 760
Query: 553 ------HASNLLELRTRARIFIQNGQAMMGCLDEKGTLE--------------------- 585
A L +++ ARI I + ++G DE E
Sbjct: 761 SLIGYAQAHILRDMKHSARIPIPDSYLLVGLADEGPAYEAEGVQNVFCLKENQIFACVQN 820
Query: 586 -------YGQGLMVVAKKPCLHPGDMRVLRAVDVPA------LHHMVDCVLFPAKGERPH 632
Y QG++V+++ P +HPGD++ + A+ P ++ + V+ P+ G+R
Sbjct: 821 ETDDEPTYLQGVVVISRSPVVHPGDVQRVYAIGKPPDDKVCFFRNLRNVVVLPSVGKRSL 880
Query: 633 TNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKIL--ARDVTIEDVEEYFADYI 690
+ G D DG++Y V +P P +Y P K L R T++D+ ++ +Y+
Sbjct: 881 ASMLGGGDLDGDLYSVIKYSPLLPTEHADPGSYEPVGTKRLPDGRQSTVDDICDFVVEYL 940
Query: 691 VNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATI--PSRLRVKI 748
+D LG++ + H++ A + C DL +L S D+ K G+ I RL ++
Sbjct: 941 NSDVLGLLSDRHLIIADQSREGTNDPACLDLAQLCSQAVDYPKNGIPVDIHDSPRLLIRF 1000
Query: 749 YPDFM-----EKQDKTWYESQHIVGNLYREVNGIAPSTTT 783
PD+ + +D +Y S +G L+R + P +
Sbjct: 1001 KPDWKMAEDNDPRDTDYYLSPRALGELFRSITIPKPKPSA 1040
>gi|358393899|gb|EHK43300.1| hypothetical protein TRIATDRAFT_294361 [Trichoderma atroviride IMI
206040]
Length = 1759
Score = 152 bits (384), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 138/453 (30%), Positives = 198/453 (43%), Gaps = 67/453 (14%)
Query: 337 ERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNV 396
E + LR GI I + SNSQ + T + A+ E + I E +GDF ++K V
Sbjct: 118 EYAVKFLRTGISIQGVHYNFYGHSNSQLKSRTCYFLAAPKEQISKKI-EGLGDFTKMKTV 176
Query: 397 TKYAARLGQSFASSREALHVD------------------SNIGKISAELAETVAKKCGYA 438
K A R+G F+ +R A+ VD G I+ LA+ ++++
Sbjct: 177 AKKAKRIGLLFSVARAAMKVDPKKVEDIPDIEVGDYVFTDGCGLIAPALAKELSRRTRII 236
Query: 439 I----YTPSAFQIRYGGYK--VTLRNNMFK---YKSESTSLDILANSKYQREGVARLRLD 489
YTPS FQ+RY GYK VTL M K + S+ + V
Sbjct: 237 FRNMRYTPSVFQLRYRGYKGVVTLDPTMAKGGTWLKMRKSMKKFSGGDDLSFSVVEYSKP 296
Query: 490 NVFERKQREVVARLDAILTDSS----KVQEALELMSSA-ENTNVLKELLNCGYKPD-AEP 543
VF EV+ LDA+ D K QE ++ A ++ +L +PD AE
Sbjct: 297 YVFGHLNDEVIVLLDALGVDRKILLRKQQEHFNFLAEAYQDPRAAFRVLCHLDRPDLAER 356
Query: 544 FL-----SMMPQTFHASN-----LLELR--TRARIFIQNGQAMMGCLDEKGTLEYGQ--- 588
+ S+ P N +L R + RI I + + G D G L+ GQ
Sbjct: 357 VIIDSLDSVRPSINRLINAEYDKMLNKRDEQKCRILIPKSRLLFGVCDAWGVLKPGQCAV 416
Query: 589 -------GL--------MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHT 633
GL ++V + PCLHPGD++ L V+ P L H+VDC++FP G RP
Sbjct: 417 KVTMDVDGLPYALKGTKVLVTRNPCLHPGDLQKLDVVERPELAHLVDCIVFPTTGRRPAA 476
Query: 634 NECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVND 693
+ SG D DG+ +FV WD D IP Q Y E + +T +D YFA Y N
Sbjct: 477 DMMSGGDLDGDTFFVTWDPDIIPSTISQAAHYPGVREPLRFAPITDDDRLLYFAKY-TNA 535
Query: 694 SLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSS 726
SLG + N ++ +A + AM C +L +L S
Sbjct: 536 SLGRVKNLYLRWARAT--NAMRPECQELNRLFS 566
>gi|169623159|ref|XP_001804987.1| hypothetical protein SNOG_14810 [Phaeosphaeria nodorum SN15]
gi|160704927|gb|EAT77662.2| hypothetical protein SNOG_14810 [Phaeosphaeria nodorum SN15]
Length = 1674
Score = 152 bits (384), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 148/533 (27%), Positives = 233/533 (43%), Gaps = 93/533 (17%)
Query: 288 SNRVVRSYPDEIDNFLRLSFVDEDLG---KLYSTVLSPQISSTNGERRTRIYERVLSTLR 344
SNRV + + +D F+ LSF D L + L P NG+ T++ L
Sbjct: 64 SNRV--TMDEVLDRFVLLSFPDFRLQWPPVAANDALRPATGRENGDWITKM-------LV 114
Query: 345 NGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARLG 404
+GI I + SNSQ + + +M+A+ E A I E MGD ++++V K + R+G
Sbjct: 115 SGITINAISYHFFGHSNSQLKSRSCFMYAASKEEVARKI-EGMGDLSKLRSVAKKSKRIG 173
Query: 405 QSFASSREALHVDS------------------NIGKISAELAETVAKKCGYAI----YTP 442
F+S+ + + S G +S + A+ +A++ Y P
Sbjct: 174 LLFSSAEVSTMLPSERCQDIDDVTSKDYIFTDGCGLMSPQFAKLLAQRRNIVFRDKRYLP 233
Query: 443 SAFQIRYGGYK--------------VTLRNNMFKYK-SESTSLDILANSKYQREGVAR-- 485
S +QIRY GYK V R +M K+K S S ++ SK G
Sbjct: 234 SVYQIRYRGYKGVLTLDPTLSGQTQVQFRASMRKFKDSPDYSFAVVDYSKPYAFGSLNDE 293
Query: 486 -LRLDNVFERKQREVVARLDAILTDSSKVQ-----EALELMSSAENTNVLKELLNCGYKP 539
+ L + ++ ++A+ L VQ A + +S T + ++LL G +
Sbjct: 294 IVVLLHTLGISEKTLLAKQTQHLDFIQNVQGGDPRSAFQFLSYINRTELAEKLLLEGPES 353
Query: 540 DAEPFLSMMPQTFHASNLLELR--TRARIFIQNGQAMMGCLDEK------GTLEYGQGLM 591
LS++ Q + + ++ R R RI + + + G D G L+ G+ +
Sbjct: 354 VRPTLLSLVKQEY--ARMINKRDEQRCRILVPKSRLLFGVCDPTAKDGCPGRLKEGECFV 411
Query: 592 ------------------VVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHT 633
+V + PCLHPGD++ + VD+P H+VDC++F +G+RP
Sbjct: 412 RITQDGDGRAQTIINTEVLVTRNPCLHPGDLQKFKVVDIPEFSHLVDCIVFTTQGKRPSA 471
Query: 634 NECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVND 693
+ SG D DG+ +FV WD D +P +P Y E I DVT + EYFA Y N
Sbjct: 472 DLMSGGDLDGDKFFVTWDSDLVPSTVAEPAQYPGGKELITFGDVTGDSRAEYFARY-TNA 530
Query: 694 SLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRV 746
SLG + N ++ +A AMS +C L +L S D G IP L+V
Sbjct: 531 SLGKVKNLYMKWA--RLGNAMSPQCQQLNRLFSQCVD----GNHIRIPQNLKV 577
>gi|347841952|emb|CCD56524.1| hypothetical protein [Botryotinia fuckeliana]
Length = 461
Score = 152 bits (384), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 99/304 (32%), Positives = 156/304 (51%), Gaps = 18/304 (5%)
Query: 572 QAMMGCLDEKGTLEYG--QGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGE 629
Q + D + T +Y +G+ +V + P LHPGD+RV++AV++PALHH+ D V+FP GE
Sbjct: 24 QIFIQVPDRENTTQYNVIEGICLVGRNPSLHPGDLRVVQAVNIPALHHLRDVVVFPQSGE 83
Query: 630 RPHTNECSGSDQDGEIYFVCWDHDRIPP-LQFQPTAYTPAPEKILARDVTIEDVEEYFAD 688
R + CSG D DG+ +FV WD D P +P +Y L R V + D++++F
Sbjct: 84 RDVPSMCSGGDLDGDDFFVIWDKDLQPTEWNCEPMSYAALDPVALKRPVVVTDLQKFFVK 143
Query: 689 YIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKI 748
Y+ NDSL I +AH+ A + +C L +L S D+ KTG AT+ L
Sbjct: 144 YMKNDSLPSIAHAHLAQADYQKQGIKDPKCLKLAELHSKAVDYVKTGQPATMQKYLAPPK 203
Query: 749 YPDFMEKQDKT---WYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGF 805
+P FMEK + Y SQ I+G L+ +V + + F K ++ Y+ D N
Sbjct: 204 WPHFMEKIHQPASKQYHSQKILGQLHDKVESVDFVPQYEEPFDKR-ILRAYELD---NAT 259
Query: 806 KEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAK---SFDKKRDLEAIS 862
+ A Q +T+YD + ++ IKTE E+ S I+ K + + D+ I+
Sbjct: 260 LKAARQ-----TKTKYDTAMRRILAQQDIKTEFEVWSTFILSKPKVGSDYKLQEDMAVIT 314
Query: 863 FSVR 866
+++
Sbjct: 315 GALK 318
>gi|343426952|emb|CBQ70480.1| related to RNA-directed RNA polymerase [Sporisorium reilianum SRZ2]
Length = 1037
Score = 151 bits (382), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 154/583 (26%), Positives = 257/583 (44%), Gaps = 95/583 (16%)
Query: 271 ILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGE 330
I +TP++V GP +SNRV+RSYP D+F RLS E + +T ++P + E
Sbjct: 135 IDLTPTRVLLSGPHWHMSNRVIRSYPGHWDHFARLSITSE--SREGATTITPNYGFDDAE 192
Query: 331 RRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELT-----AADIRE 385
R R RVL L+NGI++ ++F+ LA+S+S +T+W + T A +R+
Sbjct: 193 RYIR--GRVLDILKNGIIVAGRRFQLLAWSSSSMSSHTVWFVTPFLDATGRLVDANSVRK 250
Query: 386 RMGDFREIKNVTKYAARLGQSFASSREALHVDSNIGKISAELAETV-----------AKK 434
+G+F+++ A GQ H D +G+IS L V K+
Sbjct: 251 SLGNFKDVIRKPAMYADNGQD--------HTD-GVGQISPALMADVWESYLVNHGEFRKR 301
Query: 435 CGYAIYTPSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLDILANSKYQRE 481
PSA QIR GG K + +R +M K+ S+ L++ ANS R
Sbjct: 302 KLLKASAPSAIQIRLGGSKGMLSLNPRLTGKVLYIRPSMSKFDSQHQDLEV-ANSS-SRC 359
Query: 482 GVARLRLDNVFERKQREVVARLDAILTDSSKVQ---------EALELMSSAE-----NTN 527
A+L V R V A + D + Q E L+S+ N
Sbjct: 360 LTAKLNRPLVNALDDRGVHASAFIAIQDEAISQIGRARHNFDETARLVSAFSFGTGCNLR 419
Query: 528 VLKELLN----CGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKG- 582
+L E ++ D E F ++ + A+ L +++ +ARI + G ++G DE G
Sbjct: 420 ILFEKVHKVGLGAASTDPESFFLVLAKAVTAAALGDMKRKARIPVA-GVTLLGIADEFGY 478
Query: 583 -----------TLEYGQ-------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMV---DC 621
T+++GQ G ++ + P + P D+ +++ P H ++ +
Sbjct: 479 LKEGEVFVQVETVDFGQVSRRILTGRKLIGRSPTIDPSDITMVQCKKPPPGHPLLQLRNV 538
Query: 622 VLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTA--YTPAPEKILARDVTI 679
V+F G + ++ +R+ P QP A + K L+
Sbjct: 539 VVFNTCTRLQPLPRRLGGGDLDGDLYTIYEDERLFPPTPQPEAVFHAKVEAKELSHPCNA 598
Query: 680 EDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVA-- 737
D+ ++FAD+++ND +G++ + H+ + + A RC L KL S DF KTGVA
Sbjct: 599 HDLADFFADFMLNDFVGLVSSLHLRISDASEAGAADPRCKTLAKLHSQATDFRKTGVAVK 658
Query: 738 -ATIPSRLRVKIYPDFM----EKQDKTWYESQHIVGNLYREVN 775
+ +P + I PDF+ +++ K Y S+ +G LYR V+
Sbjct: 659 RSQLPP-MHEPIVPDFLAQSEKREGKLVYSSRRALGYLYRSVS 700
>gi|409046075|gb|EKM55555.1| hypothetical protein PHACADRAFT_161565 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1108
Score = 151 bits (381), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 155/594 (26%), Positives = 264/594 (44%), Gaps = 95/594 (15%)
Query: 273 VTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERR 332
VTPS++ GP NRVVR Y NFLR+SF+DE+ +L + +
Sbjct: 328 VTPSRLLLEGPFPERCNRVVRKYAGHTSNFLRVSFMDEN--RLQYRF------DRDVDGY 379
Query: 333 TRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMF--------ASRPELTAADIR 384
I +R + L G+ I + F+ LA+S S + +++W + +T I
Sbjct: 380 DFIRKRFGTLLFEGLWIAGRHFKFLAYSQSALKNHSVWFVRDFTAHENGTEVHVTVDSII 439
Query: 385 ERMGDFREI-------KNVTKYAARLGQSFASSREALH------------VDSN------ 419
+G FR + + +Y AR+ Q+F ++ A+ +D N
Sbjct: 440 AGLGIFRNVPQDLELMRCPARYGARVAQAFTTTEAAVEVEVEEVFPVEDMMDPNGYRSFT 499
Query: 420 --IGKISAELA--------ETVAKKCGYAIYTPSAFQIRYGGYK-------------VTL 456
IG +S ELA E + Y P AFQIR+ G+K V L
Sbjct: 500 DGIGLVSQELAADIWGALQEKSVRHRRYGRCMPRAFQIRFQGFKGMLSVDHNLSGRAVCL 559
Query: 457 RNNMFKYKS-ESTSLDIL-ANSKYQREGVAR---LRLDNVFERKQREVVARL-DAILTDS 510
R +M K+++ ES ++++ A +K R ++R + L+ + R + L DA++ D+
Sbjct: 560 RLSMKKFEAPESMTIEVASAFNKPGRLYLSRPLTMLLEGLKVRGGFGIFKTLQDAVIKDT 619
Query: 511 ----------SKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLEL 560
+ + EA L ++ + +++ +L G + +PFL + L +L
Sbjct: 620 KEATRSFRQAATLWEAYGLGTAFKLSSIFLDLAKFGSEAIEDPFLLQCLKFGIYHILRDL 679
Query: 561 RTRARIFIQNGQAMMGCLDEKGTLEYGQGLMVVAKK--PCLHPGDMRVLRAVDVPALHHM 618
+ ARI + G +++G D G L+ G+ VA+ +HPGD++V A+ P +
Sbjct: 680 KYHARIPVPKGYSLVGVADIHGYLKEGEIFACVAQSWSSTIHPGDVQVATAIGRPPPGTV 739
Query: 619 VD------CVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKI 672
D V+F +G RP + SG D DG+++ + +P ++P Y A K
Sbjct: 740 FDEEPLTNTVVFSTRGTRPLASCLSGGDLDGDVFMLTTLEGLLPTEIYEPAEYASAQRKT 799
Query: 673 LARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFS 732
+ T DV ++ +Y +D++G+I ++ +V A C L +L S D+
Sbjct: 800 VPHTSTRRDVADFILEYFYSDNIGMIVSSWLVQADQSDQGIFDEACLTLAELHSDAADYP 859
Query: 733 KTGVAAT---IPSRLRVKIYPDFM--EKQDK--TWYESQHIVGNLYREVNGIAP 779
KTG + +P + PD+ E QD+ +Y+SQ +G LYREV P
Sbjct: 860 KTGNPVSMRKVPRYALPTMKPDWSAPEIQDRLGLFYQSQRSIGRLYREVQLPVP 913
>gi|392564352|gb|EIW57530.1| RdRP-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 1232
Score = 150 bits (379), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 158/642 (24%), Positives = 274/642 (42%), Gaps = 145/642 (22%)
Query: 264 GLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQ 323
G + ++VTP+++ GP + SNRVVR Y D +NF+R+ F DE+ + +
Sbjct: 417 GTLKCFHVIVTPTRILLEGPYDTQSNRVVRKYHDYRENFVRVEFRDENR---MAFRWPKE 473
Query: 324 ISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFAS--RPE---L 378
++S + I ER + L+ G+ I ++F L +SNS RE+T W + P+ L
Sbjct: 474 VNSA-----SLIEERFGTILKEGLEIAGRRFRFLGYSNSGLREHTTWFMSDFEHPDEGLL 528
Query: 379 TAADIRERMGDFREIKNV-TKYAARLGQSFASSREAL--------------------HVD 417
T IR+ +G+F + + +KYAAR+ Q+F+ + ++ H D
Sbjct: 529 TPDRIRDSLGNFSNVNTIPSKYAARIAQAFSGTDPSVRIRRDQWDDQLADLGKKPFWHTD 588
Query: 418 SNIGKISAELAETVAKKCGYA-------IYTPSAFQIRYGGYK-------------VTLR 457
G IS L + + A PSA+QIR+ G+K + LR
Sbjct: 589 GQ-GTISVGLRDEIWDVLVKAQPDKAKLTLKPSAYQIRFLGFKGIVVVDETLEGVYMRLR 647
Query: 458 NNMFKYKS---ESTSLDILANSKYQREGVARL------RLDNVFERKQREVVARLD---- 504
M K+K+ + +I + G ARL L+++ RK E + L
Sbjct: 648 PTMNKFKAHADDEADAEIEIAKAFIYPGTARLCRPLIMVLEDLGVRK--EAMLELQNLAK 705
Query: 505 -AILTDSSKVQEALELM------SSAENTNVLKELLNCGY-------KPDA--EPFLSMM 548
++T S + E + L+ S ++L+ L G PD F+ +
Sbjct: 706 AVVVTASDSMGETINLLRKHALGDSFGLRHILEHLRRAGMCMRREAGSPDVMDNDFILQL 765
Query: 549 PQTFHASNLLELRTRARIFIQNGQAMMGCLDEK--------------------------- 581
+ L E++ ARI I N ++G DE
Sbjct: 766 VKYAQHHILHEIKHDARIPIPNAHQLVGVADEGPAYMQREEYKDKEVFCLGMGEIFACVE 825
Query: 582 ----GTLEYGQGLMVVAKKPCLHPGDMRVLRAVDVPA------LHHMVDCVLFPAKGERP 631
G Y +G + +++ P +HPGD++ +RA+ P ++ + V+ P+ GER
Sbjct: 826 QPDGGEPLYVKGQVTISRSPHIHPGDVQRVRAIGKPPDDKLCLFRNLRNVVVLPSVGERS 885
Query: 632 HTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIV 691
+ +G D DG+ + V D +P P +Y + + R TI+D+ + +Y+
Sbjct: 886 LASCLAGGDVDGDEFLVIKDPTLLPTTNADPASYDAGDPRDIGRPSTIDDICNFLLEYMQ 945
Query: 692 NDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAA---TIPSRLRVKI 748
+D +G++ + H+ A C L +L S D+ K GV ++P L ++
Sbjct: 946 SDVMGLVADQHLKIA----------DCMVLARLCSQAVDYPKNGVPVNLESMPEPL-IRA 994
Query: 749 YPDFMEKQDK-----TWYESQHIVGNLYR--EVNGI-APSTT 782
PD+ + +D +YES +G L+R E+ + AP T+
Sbjct: 995 KPDWKKSEDNDPRPSDYYESTRALGALFRNFEIKPLHAPETS 1036
>gi|392567096|gb|EIW60271.1| RdRP-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 1228
Score = 150 bits (379), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 156/629 (24%), Positives = 272/629 (43%), Gaps = 123/629 (19%)
Query: 262 DGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLS 321
D G + I TP++V GP +S+SNRV+R + D+F+R+ F DED +
Sbjct: 421 DMGKFQCHHITFTPTRVILEGPYVSVSNRVIRQFAGFEDHFVRVDFRDED---RLQYRWA 477
Query: 322 PQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMF-----ASRP 376
++ T T + ERV L++G +G +++E LA+S+S RE+ +W ++
Sbjct: 478 REVDGT-----TLLTERVGGILKHGFELGGRQYEFLAYSSSALREHAVWFMNPFEHPTQG 532
Query: 377 ELTAADIRERMGDFRE-IKNVTKYAARLGQSFASSREALHVDSN---------------- 419
+ A IR+ +GDF IK +KYAARL Q+F ++ ++ + +
Sbjct: 533 FVCAQRIRDSLGDFTNVIKQPSKYAARLAQAFTATDPSVSISRDQWEEMEDLESEQEDYL 592
Query: 420 ----IGKISAELAETVAKKCGYAI-------YTPSAFQIRYGGY-------------KVT 455
+G IS EL + + + A +TP A+QIR+ G+ K+
Sbjct: 593 FTDGVGTISQELGDMIWEALCTAKESLRRVDHTPHAYQIRFLGFKGVVVIDKRLKGIKMR 652
Query: 456 LRNNMFKYKSESTSLDILANSK-YQREGVARLR--LDNVFERKQREVVARLD------AI 506
LR +M K++ + + ++ + R G + L L + E + E A L A
Sbjct: 653 LRPSMNKFEVPDMDIAPIEIARWFDRPGTSYLNKALIMILEDRGVEQKAFLKLQEMAAAQ 712
Query: 507 LTDSSKVQEALELMSSAENTN-------VLKELLNCGYKPDAEP----------FLSMMP 549
+T +S + L+ A N VLK L G EP FL +
Sbjct: 713 ITTASDTITSTTLLLKAHNLGQSFNIPFVLKALRAAGLGMRGEPDSPAGDLGDTFLRSLL 772
Query: 550 QTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLE------------------------ 585
L +++ ARI I + ++G DE E
Sbjct: 773 IFAQHHILRDIKHGARIPIPDSYLLVGVADEGPVYEKEGVEDVFMLQEGQIYACIQNEAD 832
Query: 586 ----YGQGLMVVAKKPCLHPGDMRVLRAVDVPA------LHHMVDCVLFPAKGERPHTNE 635
Y +G + +++ P +HPGD++ + A+ P + + V+ P+ G+R +
Sbjct: 833 EKPVYLKGTVSISRSPVVHPGDVQRVWAIGEPPAGKECFFRGLKNVVVLPSVGKRSLASM 892
Query: 636 CSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKIL--ARDVTIEDVEEYFADYIVND 693
G D DG++Y + IP +P +Y + L RD T++D+ ++ +YI +D
Sbjct: 893 LGGGDLDGDLYSIIKYDPLIPIEHAEPGSYVSVGTRSLPDGRDSTVDDICDFIVEYINSD 952
Query: 694 SLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATI--PSRLRVKIYPD 751
LG++ + H++ A D C +L +L S D+ K GV I +L ++ PD
Sbjct: 953 VLGLLSDRHLIIADQSKDGTSDPACLELARLCSQAVDYPKNGVPVDIFDSPKLLIREKPD 1012
Query: 752 FMEKQDK-----TWYESQHIVGNLYREVN 775
+ + +D +Y S +G L+R ++
Sbjct: 1013 WKKAEDSDPRDTDYYFSSRALGELFRSID 1041
>gi|159123458|gb|EDP48577.1| RNA-directed RNA polymerase, putative [Aspergillus fumigatus A1163]
Length = 809
Score = 150 bits (378), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 157/642 (24%), Positives = 255/642 (39%), Gaps = 132/642 (20%)
Query: 288 SNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGI 347
SNR + S P +++ + SF LG+ + + R+ L+ GI
Sbjct: 63 SNRAIASQP--LEHLVHFSFSGFRLGQWKDDKWQSCTARETADYLARL-------LKEGI 113
Query: 348 VIGDKKFETLAFSNSQERENTLWMF-ASRPELTAADIRERMGDFREIKNVTKYAARLGQS 406
++ + S+SQ R ++ S+ E+ A++ E +GDF IK V K A R+G
Sbjct: 114 ILNGVLYSFYGHSSSQLRSRACYLLRGSKNEV--AELVESLGDFSGIKTVAKKAKRIGLL 171
Query: 407 FASSREALHVDSNI------------------GKISAELAETVAKKCGY----AIYTPSA 444
F+S + V G + A+ A +++K Y P+
Sbjct: 172 FSSCHALMKVPDGTYEVIDDIEFSGYNFTDGCGLVGAKTARVLSQKLSIISRNTRYHPAV 231
Query: 445 FQIRYGGYK--------------VTLRNNMFKYKS-ESTSLDILANSKYQ---------- 479
+QIR+ GYK R +M K+ S ++ SK Q
Sbjct: 232 YQIRFKGYKGVVMLEPQMPPQYWFQFRRSMRKFSGIGDRSFAVVEYSKTQPATPLFYSLP 291
Query: 480 ------------REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEALELMSSA 523
E + L VF RKQ+E RL +T+ + A + S
Sbjct: 292 LMVQPYTYGYLNDEVILLLHTLGVSAEVFLRKQKEHFQRLQESVTEPTV---AFTFLCSL 348
Query: 524 ENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELR--TRARIFIQNGQAMMGCLDEK 581
++ ++L+ G + + S++ +L R + RI + + + G D +
Sbjct: 349 NRFDLAEKLVLHGIERVSGALRSLVAD--EHKKMLNKREDQKCRILVPESRLVFGVCDPR 406
Query: 582 GTLEYGQGLM-------------------VVAKKPCLHPGDMRVLRAVDVPALHHMVDCV 622
G L+ G+ + VV + PCLHPGD+R L+AVD P L H+ DC+
Sbjct: 407 GVLQEGECFLRVTDDMNGGRPRTIVGCEVVVTRNPCLHPGDLRKLKAVDRPELSHLRDCI 466
Query: 623 LFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDV 682
+F KGERP ++ SG D DG+ +FVCWD D +P + Y P E ++T++
Sbjct: 467 VFAVKGERPAADQMSGGDLDGDTFFVCWDPDLVPSTVSEAAHYPPGREPFAVEEITVDHR 526
Query: 683 EEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPS 742
EYFA Y S+ + + A++ A S C ++ +L S+ D G IP
Sbjct: 527 IEYFARYT---SISLGRTKKLFLAWAILKGAFSVECQEINRLHSLCVD----GNRIKIPD 579
Query: 743 RLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEV 802
RL P E I+ L+RE +++ A GA YD+ V
Sbjct: 580 RLMNVPSPS-------KEVEDSFILNVLHREAE-----KESLQKLAARGAWNRYDSSEVV 627
Query: 803 ----------NGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGI 834
+ F+ V + +D R +L L+ Y+ I
Sbjct: 628 ETILCQPRLCSEFRLVVLAYDW--CRKNGKGQLLELLPYFNI 667
>gi|403358446|gb|EJY78873.1| RNA-directed RNA polymerase [Oxytricha trifallax]
Length = 1379
Score = 149 bits (377), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 161/682 (23%), Positives = 266/682 (39%), Gaps = 191/682 (28%)
Query: 270 KILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNG 329
+I TP+ F + +NRV+R + DNF RL V++ L K + +
Sbjct: 453 RIYQTPTLTLFFANQREQTNRVIRQFKKYKDNFFRLVLVNDQLQKFHFGSM--------- 503
Query: 330 ERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASR--PELTAADIRERM 387
++ + + + ++ + IGD + L +SNSQ + +++WM S PE+ I R+
Sbjct: 504 -KQKEMLQHMKDLMKQELYIGDSLAQVLNYSNSQLKNHSVWMVCSTSIPEIQPNAIISRL 562
Query: 388 GDFREIKNVTKYAARLGQSFASSR--EALHVDSNI------------------------- 420
G F K AR GQ F++++ L DSN+
Sbjct: 563 GTFTNEGGNLKMFARRGQCFSTTKYVTKLDPDSNVEVIEDIERPKKNDPDLAQAEPDQRE 622
Query: 421 ---------GKISAELAETVAKKCGYAIYTPSAFQIRYGGYK-------------VTLRN 458
G IS LA +A+ + + SAFQ+R GG K V LR
Sbjct: 623 GNYVFTDGCGNISELLASEIAQ--SHQLMKCSAFQVRIGGVKGVLMLKPDLDGRKVQLRK 680
Query: 459 NMFKYKSESTSLDILANSKYQREGVARLRL---------DNVF-------------ERKQ 496
+ K+ E+ L+++ S + + + R + DNVF E+
Sbjct: 681 SQIKFACENWGLEVIRCSTFSQGYLNRQVILLLSCLGVDDNVFLSHLHTALENLNVEKVI 740
Query: 497 REVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNCGYKP----------------- 539
+ + +R +T SK ++ + + N +K L+ + P
Sbjct: 741 KNLYSRSTVFMTSKSKNRK--DENENKSKANEMKNELDVFFGPSKIFSPIFKHCLAQTLK 798
Query: 540 DAEPFLSMMPQTFHASNL----------------------------LELRTRARIFIQNG 571
E +P+ +L + L+ +ARI I+N
Sbjct: 799 QIEQVKKGLPEEMRTKDLHLSPKQVFFLENEPIFDSILSNMVLGLAVNLKKKARIRIKNS 858
Query: 572 QAMMGCLDEKGTLEYGQ------------------------------------------- 588
++G +DE GTL+ G+
Sbjct: 859 CTLIGVIDETGTLDEGEIYLKINRGSYDYDQIQEKLVDEYDEIENADGKKSRLAEINTWL 918
Query: 589 -----GLMVVAKKPCLHPGDMRVLRAV-DVPALHHMVDCVLFPAKGERPHTNECSGSDQD 642
G ++V K PC HPGD+R LRAV + H+ + ++F +KG RP ++ SG D D
Sbjct: 919 DQIIEGDVIVTKNPCSHPGDIRKLRAVGEHSTFEHLTNVIVFSSKGCRPEQHKMSGGDLD 978
Query: 643 GEIYFVCWDHDRIPPLQF--QPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICN 700
G++Y WD + LQ +P Y E I D + + +Y A+Y D+LG + +
Sbjct: 979 GDVYLCMWDESLVNALQKIEKPAVYKKFEESI-KTDSQKDTIVDYMAEYFEKDNLGHLAH 1037
Query: 701 AHVVYAYSEPDKAMSNR-CPDLVKLSSIVGDFSKTG--VAATIPSRLRVKI--YPDFMEK 755
H+ + + N+ C +L SI DF+K G V + K+ +PD+MEK
Sbjct: 1038 LHLGLSDQLGVEGPYNKECVELSWYISIAVDFAKHGKHVDKDKYEMIEKKLDRWPDYMEK 1097
Query: 756 QD--KTWYESQHIVGNLYREVN 775
D + ES I+G LYR V+
Sbjct: 1098 NDIGRKTVESPLILGQLYRAVD 1119
>gi|308458494|ref|XP_003091586.1| hypothetical protein CRE_24272 [Caenorhabditis remanei]
gi|308255699|gb|EFO99651.1| hypothetical protein CRE_24272 [Caenorhabditis remanei]
Length = 1634
Score = 149 bits (377), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 173/736 (23%), Positives = 287/736 (38%), Gaps = 180/736 (24%)
Query: 264 GLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQ 323
G V K+++TP++ + PE ++NR +R + +R + D++L K+ +L
Sbjct: 443 GYRKVRKVILTPTRKIYLAPEKIMANRAIRGACHDGTRIIRATLRDDNLQKMRFNLLG-- 500
Query: 324 ISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADI 383
+ GE L LR+G I ++ F LA SNSQ RE + A+
Sbjct: 501 --NLQGEI-------TLGHLRDGFGIMERAFGYLASSNSQMREGGAYFMERYDAEQLAEY 551
Query: 384 RER--------------------MGDFREIKNVTKYAARLGQSFASSREALHVD------ 417
+E +G F + ++ K ARLGQ F +R +V
Sbjct: 552 KEEHPGEPVPHSFKPMIKEYWNVLGKFVDTGSIPKALARLGQCFTQARPIDNVSISPTDY 611
Query: 418 --------------------SNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYKVTL- 456
+G ISA LAE + G + P AFQ R+ G+K L
Sbjct: 612 KMIPDAIGGKNTEGKPYMYTDGVGCISAGLAEQIFGSLGIK-HVPCAFQFRFRGFKGMLA 670
Query: 457 --------------------------RNNMFKYKS-----------ESTSLDILANSKY- 478
R + K++S S+ + N +
Sbjct: 671 IDPNIDHTANHWESLGLRYHRIKCLFRKSQLKFESCQEDEQMEMVKWSSPTPVTLNKPFI 730
Query: 479 ----QREGVARLRLDNVFERKQREVVA----RLDAILTDSSKVQEALELM------SSAE 524
Q G+ L + E+++ A + + K +E LE M +S E
Sbjct: 731 NILDQVSGLQSLECHKRVSGRVEELLSMEMDNYSAAVVNEEKCREVLEGMPRRIHFASME 790
Query: 525 NTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQN--GQAMMGCLDEKG 582
N G+ EPF + + S + L + +I I G++M G DE G
Sbjct: 791 RKN--------GFVLSTEPFFRSLVKATIDSAMSRLLRKLQIPIPGNLGRSMFGITDETG 842
Query: 583 TLEYGQ------------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHM 618
L+YGQ G ++V K P L GD+R+ AVD+P LHH+
Sbjct: 843 QLQYGQVFVRYTENVNEKHPSRHKKTITLTGKVLVTKFPSLCEGDVRMYEAVDIPELHHL 902
Query: 619 VDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTA-----YTPAPEKIL 673
D ++FP G R +E +GSD DG+ Y V WD P L F+ + P++
Sbjct: 903 QDVIVFPQTGPRSQPDEMAGSDLDGDEYAVIWD----PQLFFERNQKAFEYSSEKPDQHF 958
Query: 674 ARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSK 733
A + + ++ +Y + +G+ H+ S+ S+ C + + + D++K
Sbjct: 959 AAEEMDDGFHWFYTEYAKQEDVGVTSINHL--HQSDQFGINSDVCRSIAIKNGMALDYAK 1016
Query: 734 TGVAATIPSRL--------RVKIYPDFMEKQ--DKTWYESQHIVGNLYREVNGIAPSTTT 783
+GVA + + R + PD+ + Y+S ++G LYRE+
Sbjct: 1017 SGVAPPPLTSVWSSEGPPERSERRPDYANNRYNGSPSYQSSRLLGQLYRELR-------C 1069
Query: 784 IKSFAKEGAMQF---YDTDMEVNGFKEVAMQFDGFK-YRTEYDNKLGNLMDYYGIKTEAE 839
+ E + Q D + G++E DG + T Y+ ++ ++MD YG+ TEAE
Sbjct: 1070 VNDVCSEDSKQVPVAIDPLLTWQGWEEFV---DGAHLHMTRYNAEVRSIMDTYGVATEAE 1126
Query: 840 MLSRCIMEMAKSFDKK 855
+ S C E+ +K
Sbjct: 1127 IFSGCYREIRNRHSEK 1142
>gi|393244712|gb|EJD52224.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 1061
Score = 149 bits (376), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 151/625 (24%), Positives = 277/625 (44%), Gaps = 132/625 (21%)
Query: 265 LIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQI 324
+++ + ++VTPS ++ GP+ + SNRV+R Y FLR+ F +ED +
Sbjct: 266 VLFSHHLVVTPSGLHLEGPDPNKSNRVLRHYDQYTQFFLRVRFANEDRLQFRWP------ 319
Query: 325 SSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMF-----------A 373
+GE + +YERV L+NGI + +KF+ L +S S + + W
Sbjct: 320 RDVDGE--SFVYERVGGILKNGIEVAGRKFQFLGYSLSSLHQYSAWFVTDFYAEVEPGSG 377
Query: 374 SRPELTAADIRERMGDFREIKNV-TKYAARLGQSFASSREAL-----HVDSNIGKISAEL 427
R +T IR+ +G+F ++ + + Y AR+ Q+F+++ + ++ N+ I E
Sbjct: 378 HRVRVTPQYIRDHLGNFAKVIDCPSLYGARMAQAFSATDPTITLADGEIEYNVPDIRTET 437
Query: 428 AETVAKKCGYAIYTP-----------------------SAFQIRYG-------------G 451
E ++ CG +P +A+QIR G G
Sbjct: 438 GELMSDGCG--TISPELSLEMNEQRIHGRTRAEWEKVVNAYQIRVGGAKGVVGVDPRLEG 495
Query: 452 YKVTLRNNMFKYKS-ESTSLDILANSKYQREGVAR---LRLD------NVFERKQREVVA 501
K+ LR +M K+ + ST +++ ++ R + R + L+ +VFE Q VV
Sbjct: 496 RKLRLRVSMIKFDALHSTDVEVANIARPARMYLNRPLIMTLETLGVRRHVFETLQANVV- 554
Query: 502 RLDAILTDSSK--VQEALELMSSAENTNVLKELLN--CGYKPDA---------EPFLSMM 548
R DS + + +L + VL++L++ CG++ D + F+ +
Sbjct: 555 RTAHEAGDSIRRFIPNVGKLGDRFQLRFVLEQLVDIGCGFRDDCSETDGVVLDDSFVRQL 614
Query: 549 PQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL------------------EYGQGL 590
++ L +++ ARI + ++G +DE L ++ +G
Sbjct: 615 VKSVLWETLRDVKYSARIQVPESWTLLGKVDEHDILTNEKEVMVYVMDSDYPNGKWLEGP 674
Query: 591 MVVAKKPCLHPGDMRVLRAVDVP-----ALHHMVDCVLFPAKGERPHTNECSGSDQDGEI 645
++ + P +HPGD++++ + P + +++C++F AKG R + +G D DG+
Sbjct: 675 ALICRSPVMHPGDVQMVTCISPPQGSDPSRCPLINCIIFSAKGTRSLASCLAGGDYDGDE 734
Query: 646 YFVCWDHDRIPPLQFQPTAY-TPAPE-----KILARDVTIEDVEEYFADYIVNDSLGIIC 699
+ + + L + +A+ PAPE + R TIEDV ++F DYI DS+G++
Sbjct: 735 FHI----SQYEQLFIKKSAHPAPAPEVVERLYVPERQGTIEDVADFFVDYINRDSVGLLA 790
Query: 700 NAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSR----LRVKIYPDFMEK 755
H++ A + +C L ++ S DF KTG+ +P R L PD++
Sbjct: 791 RQHLIIADQNDRGVKAPKCLTLAEMYSRAVDFPKTGIP--VPPRDMPALEFDAKPDWITN 848
Query: 756 ------QDKTWYESQHIVGNLYREV 774
Y S +G+LYR V
Sbjct: 849 EVAAEEAAGAVYRSTKALGHLYRAV 873
>gi|46133873|ref|XP_389252.1| hypothetical protein FG09076.1 [Gibberella zeae PH-1]
Length = 1721
Score = 149 bits (375), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 133/482 (27%), Positives = 210/482 (43%), Gaps = 87/482 (18%)
Query: 332 RTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFR 391
R + + + LR GI I + SNSQ + + ++ A+ E + I E +GDF
Sbjct: 112 RQEVSDYSIRCLRAGISINGVHYNFYGHSNSQLKSRSCFLLAATKEGISRQI-ESLGDFT 170
Query: 392 EIKNVTKYAARLGQSFASSREALHVDSN------------------IGKISAELAETVAK 433
++K V K A R+G F+S++ A+ ++ + G I+ LA+ +++
Sbjct: 171 KMKTVGKKAKRIGLLFSSAKTAMTINPDRCEDIPDVETADYIFTDGCGLIAPSLAQELSR 230
Query: 434 KCGYAI----YTPSAFQIRYGGYK--VTLRNNMFKYKS--------------ESTSLDIL 473
+ YTPS FQIRY GYK VT+ M K K+ + S
Sbjct: 231 RTRIIFRDTRYTPSVFQIRYRGYKGVVTVDTRMKKQKALLKFRKSMKKFSGGDDHSFAPF 290
Query: 474 ANSKYQREGVARLRLDNVFER----KQREVVARLDAILTDSSKVQEALELMSSAENTNVL 529
+ E + L + + KQR D + + ++A L+S + ++
Sbjct: 291 SYGFLNDETIILLHALGISQETLLAKQRR---HFDLLRNAKTDHRDAFRLLSYSNRPDLA 347
Query: 530 KELLNCGYKPDAEPFLSMMPQTFHASNLLELR--------TRARIFIQNGQAMMGCLDEK 581
+ +L G S+ PQ N EL+ R RIF+Q + + G D
Sbjct: 348 ERVLLDGSD-------SIKPQINSIVNA-ELKKMLNKKDGQRCRIFVQKSRLLFGVCDAW 399
Query: 582 GTLEYGQ----------GL--------MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVL 623
L G+ G+ + V + PCLHPGD + + V+ P L H+ DC++
Sbjct: 400 DVLREGEVAVKVTMEETGVPHALKNTEVTVIRNPCLHPGDWQKFKVVERPELAHLTDCIV 459
Query: 624 FPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVE 683
F +G+RP + SG D DG+ +FVCWD D IP P Y + I R +T +D
Sbjct: 460 FSTRGKRPAADMMSGGDLDGDTFFVCWDPDLIPSTISTPALYPGGRDPITFRPITDDDRL 519
Query: 684 EYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSR 743
YFA Y N SLG + N ++ +A + MS +C +L +L S D G IP +
Sbjct: 520 VYFAKY-NNASLGKVKNLYLDWARAT--GPMSAQCQELNRLFSQCVD----GNRIRIPEK 572
Query: 744 LR 745
L+
Sbjct: 573 LQ 574
>gi|343428005|emb|CBQ71530.1| related to RNA-dependent RNA polymerase [Sporisorium reilianum SRZ2]
Length = 1505
Score = 149 bits (375), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 149/617 (24%), Positives = 256/617 (41%), Gaps = 114/617 (18%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
V + +TP++ GP + SNRV+R +P+ +FLR++F DED + +S +
Sbjct: 466 VFHVTITPTRTLLEGPFMDASNRVLRLFPEFGSHFLRVAFCDEDGDRF---PVSRHDFAD 522
Query: 328 NGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE-----LTAAD 382
+ + + + ER+ + L+ GI I ++FE LA+S S + W + + A
Sbjct: 523 DIDSESFVRERIGTPLKEGIDIAGRRFEALAWSGSGLGSHHCWFVTAFTDKDGKWWNAER 582
Query: 383 IRERMGDFREIKN-VTKYAARLGQSFASSREALHVDSN---------------------- 419
IR +G+F ++N ++ ARL Q+F+++ + + +
Sbjct: 583 IRASLGNFSRVENQPARFGARLSQAFSATSSTIRISDDWIQIVEDDFSHALMPSSNGNGR 642
Query: 420 -----------IGKISAELAETVAKK-CGY-------------AIYTPSAFQIRYGGYKV 454
+G+IS L + ++ C A PSA Q R GG K
Sbjct: 643 SSKQRYLLTDGVGEISRALLNEIWRELCAVKNMRREWTLCEQDAARIPSAIQFRLGGAKG 702
Query: 455 TL-------------RNNMFKYKS-ESTSLDILANSKYQREGVARLRLDNVFER------ 494
L R++M K+ + E L++ S L N E
Sbjct: 703 VLCLNPQLKGKVMKVRHSMIKFSAPEHRDLEVATTSFSALPARLNRPLINALEDLGVPAH 762
Query: 495 -------KQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELLN-CGYKPDAEP--- 543
K E +S++ L +AE + + L + G +PD P
Sbjct: 763 VFLTLQDKAVESAQSARKCFRRASQLMGTFALSDTAEMHRLFRRLDSIVGIQPDQLPADG 822
Query: 544 FLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ--------------- 588
L+ + A+ L +L+ +ARI + +G ++G +DE G L+ G+
Sbjct: 823 ILNRLCTIVIAAALGDLKRKARIPV-DGCTLIGVVDEFGFLQKGEIFAQVDYGKDGSFTA 881
Query: 589 --GLMVVAKKPCLHPGDMRVLRAVDVPALH---HMVDCVLF-PAKGERPHTNECSGSDQD 642
G ++V + P +HPGD+RV+ AV P H + + ++F RP + SG D D
Sbjct: 882 VEGRVMVGRSPTIHPGDVRVVNAVVPPRGHPLWQLRNVLVFNKCPTGRPLQSILSGGDLD 941
Query: 643 GEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAH 702
G+IY + D P P Y + LA T D+ ++F DY++ND +G++ + H
Sbjct: 942 GDIYTIYRDPQLFPKRIESPGQYKTVAPRSLAAPCTFADLADFFVDYVINDQVGLVSHFH 1001
Query: 703 VVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAA---TIPSRLRVKIYPDFMEKQ--D 757
+ A ++ C L +L + D+ KTG A +P PDF+ ++
Sbjct: 1002 LQIADKSHLHSLDPDCIRLAQLHAKAVDYRKTGQAVHRRDVPMPPFGAERPDFLVQRPAG 1061
Query: 758 KTWYESQHIVGNLYREV 774
Y S +G LYR +
Sbjct: 1062 PGIYPSTRALGQLYRAI 1078
>gi|169844306|ref|XP_001828874.1| RNA-directed RNA polymerase 2 [Coprinopsis cinerea okayama7#130]
gi|116509986|gb|EAU92881.1| RNA-directed RNA polymerase 2 [Coprinopsis cinerea okayama7#130]
Length = 1232
Score = 146 bits (369), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 163/640 (25%), Positives = 268/640 (41%), Gaps = 137/640 (21%)
Query: 255 TSPAV-ALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSY-PDEIDNFLRLSFVDEDL 312
T+P + DG L + +TP+K+ GP SNRV+R+Y P ++FLR++F DE
Sbjct: 409 TTPTLEPTDGSLYQAQHVTITPTKILLEGPFPERSNRVIRAYEPRHQESFLRVTFADE-- 466
Query: 313 GKLYSTVLSPQISSTNGE--RRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLW 370
G+L Q S + E + ER L NG+ I + F LA+S S +E+++W
Sbjct: 467 GRL-------QYRSNDRELDHEAFVRERFGEFLLNGLTIAKRHFRFLAYSQSALKEHSVW 519
Query: 371 MFASRPE-----LTAADIRERMGDF-------REIKNVTKYAARLGQSFASSREALH--- 415
+ + A I +G+F + + +YAARL Q+F ++ +
Sbjct: 520 FVKPFVDTKHGLVNAESIIHSLGNFDGLDFDSQLMHCPARYAARLSQAFTATDACIIEVE 579
Query: 416 -------------------VDSNIGKISAELAETVAK-------KCGYAIYTPSAFQIRY 449
+G +S ELA + K + P+A+Q+R+
Sbjct: 580 EIINGRDIEVVSPEGQKYCFTDGVGTLSPELAREIWKHLKRTKRRARSVKGHPAAYQVRF 639
Query: 450 GGYK-------------VTLRNNMFKYKSESTSLDILANSKYQR--------------EG 482
G K + LR +M K+++ ++ +A S + R EG
Sbjct: 640 MGSKGMLSVDYRLQGSTIYLRPSMIKFEAPNSRAIEIARS-FDRPTPYFLNRPLITLLEG 698
Query: 483 VA------RLRLDN-VFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLK-ELLN 534
+ + D V E +Q A + D+ + + L S + N L +LN
Sbjct: 699 LGVPLSTFKFFQDRAVRETQQAASSLATAAAMLDTYGLGASFRLPSVMNSLNKLGIPVLN 758
Query: 535 CGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLE--------- 585
+ FLS + L L+ ARI + ++G D L+
Sbjct: 759 ------QDRFLSRAMEYAINHILRLLKNHARIPVPGAWTLVGVADVHRFLQPRQIFAYVK 812
Query: 586 -------YGQGLMVVAKKPCLHPGDMRVLRAV-----DVPALHH-MVDCVLFPAKGERPH 632
Y +G +++++ P +HPGD+++++A+ D P H + + V+F G+RP
Sbjct: 813 PLNSRGIYLEGPVLISRSPTIHPGDVQLVQAIGHPPPDSPFAHEPLANTVVFSVLGDRPL 872
Query: 633 TNECSGSDQDGEIYFVCWDHDR----------IPPLQFQPTAYTPAPEKILARDVTIEDV 682
+ G D DG+IY + D + PLQ P+ Y PA KIL R T+ DV
Sbjct: 873 PSCLGGGDLDGDIYNLIPLEDPQRPELRGFTPVRPLQ-APSQYAPAQRKILDRKATMRDV 931
Query: 683 EEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTG--VAATI 740
E+ +YI++D LGII ++ A P + C L L S D+ KTG VA T
Sbjct: 932 AEFVMEYILSDVLGIIAINWLIIADQSPRGIYDSDCLKLADLHSDAVDYPKTGNPVALTN 991
Query: 741 PSRLRVKIYPDFMEKQ------DKTWYESQHIVGNLYREV 774
RL+ + PD+ + +Y S +G L+R +
Sbjct: 992 IPRLKYRTKPDWNAPETVDTSASGNYYTSSKAIGKLFRAI 1031
>gi|403164222|ref|XP_003324286.2| hypothetical protein PGTG_05092 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375164936|gb|EFP79867.2| hypothetical protein PGTG_05092 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1282
Score = 145 bits (367), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 160/602 (26%), Positives = 270/602 (44%), Gaps = 111/602 (18%)
Query: 271 ILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGE 330
+ +TP+ + GP SN ++R Y D F+R++ DED G Y +
Sbjct: 477 VTITPTTLILEGPLPEESNSILRLY-DYNSAFIRVAIRDED-GSNYH-------HDREVD 527
Query: 331 RRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWM---FASRPELTAAD-IRER 386
RT + +R L +G+ + ++F L +S+S + + W F + + +A+ IR R
Sbjct: 528 GRTFLKQRYRPFLVDGLYVAGRRFMFLGYSSSALKCHQAWFVCPFVHKGAVMSAEKIRSR 587
Query: 387 MGDFREIKNV-TKYAARLGQSFASSREALHV------------------DSNIGKISAEL 427
MG F + + +Y AR+ Q+F ++++A+ + +G IS L
Sbjct: 588 MGTFSLVNRIPARYMARIAQAFTTTQKAVTLAPSQLRKIPDVQRNGSVFTDGVGTISPSL 647
Query: 428 AETVAK---------KCGYAIYTPSAFQIRYGGYK-------------VTLRNNMFKYKS 465
A V + K AI + S +QIR GGYK V LR +M K+ +
Sbjct: 648 ARQVEQALLGTMMVLKRRNAINS-SCYQIRLGGYKGMLSIDPTLAGEIVGLRPSMSKFDA 706
Query: 466 ESTSLDILANSK-----YQREGVARLRLD-----NVFERKQREVVARLD---AILTDSSK 512
+S +LDI ++ + + + ++ D +VF Q++ V ++ S+K
Sbjct: 707 DSYTLDIASSFRRPLPSFLNRPLIKILEDLKIPSHVFMTAQQKTVRSIERSRESFRQSAK 766
Query: 513 VQEALELMSSAENTNVLKEL--LNCGYKPDA--EPFLSMMPQTFHASNLLELRTRARIFI 568
+ E L S+ +LK L PD F+ L +L+ RARI +
Sbjct: 767 LMEKAGLGFSSSFPKILKRFSSLMRTDNPDEVRSTFIDDCLDLAVIECLRDLKYRARIPL 826
Query: 569 QNGQAMMGCLDEKGTLEYGQ----------------GLMVVAKKPCLHPGDMRVLRAVDV 612
+ ++G DE+ L+ GQ G + +++ P +HPGD++V+ A+
Sbjct: 827 EGSYTLVGVADEEFCLQEGQIYACVQEKGKPRKYLSGKIAISRSPSIHPGDVQVVHAIGR 886
Query: 613 PA-----LHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQ-----P 662
P L +V+CV+F G+R + G D DG++Y + D IP FQ P
Sbjct: 887 PPPGSEKLGALVNCVVFSVIGKRSLPSCLGGGDLDGDLYSLITDPQMIP---FQKDICSP 943
Query: 663 TAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLV 722
+Y+P +L + TI D E+F DYI +D +GII H+ A + + C L
Sbjct: 944 GSYSPIQPILLPQPCTILDGIEFFLDYISSDLVGIIATRHLQIADQQTLGTLHPDCLKLA 1003
Query: 723 KLSSIVGDFSKTGVAATIPSRLRVK-IYPDFM---------EKQDKTWYESQHIVGNLYR 772
+L S D+ KTGV +I +V+ PDFM +K ++ +YES ++G L+R
Sbjct: 1004 ELHSKAVDYPKTGVPVSIQDLPKVESAKPDFMCPEYMLNVHKKGNERYYESDKVLGRLFR 1063
Query: 773 EV 774
+
Sbjct: 1064 AI 1065
>gi|452978294|gb|EME78058.1| hypothetical protein MYCFIDRAFT_145022 [Pseudocercospora fijiensis
CIRAD86]
Length = 1703
Score = 145 bits (366), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 149/537 (27%), Positives = 225/537 (41%), Gaps = 115/537 (21%)
Query: 289 NRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTR------IYERVLST 342
NRV++ D + FL LS D L QI++ + T+ E V
Sbjct: 65 NRVIKD--DPLHQFLLLSVADFRL----------QITANTKDGETQPAPARESAEYVARL 112
Query: 343 LRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAAR 402
L+ G+V+ + SNSQ + + ++FA+ E+ + E + DF +++V K A R
Sbjct: 113 LKTGVVLNGLAYHFFGHSNSQLKSRSCFLFAASKEVIKEKV-EALADFSNMQSVGKKAKR 171
Query: 403 LGQSFASSREALHVD------------------SNIGKISAELAETVAKKCGYAI----Y 440
LG F+S+ AL + G I+ LA+ VA++ Y
Sbjct: 172 LGLLFSSAEHALELQPERCTDIDDVKLGDYVFTDGCGLIAVRLAKQVAQRKRIVYRNKRY 231
Query: 441 TPSAFQIRYGGYK--------------VTLRNNMFKYKS-ESTSLDILANSKYQREGVAR 485
PS QIRY GYK V R +M K K + S ++ +SK
Sbjct: 232 LPSVLQIRYRGYKGVLMIDPTLTGQTQVLFRKSMKKLKDVKDLSFSVVEHSK-------- 283
Query: 486 LRLDNVFERKQREVVARLDA--ILTDS--SKVQEALELMSSAENTNVLKELLNCGYKPDA 541
F E+V L+A + TD+ SK E L+ + A N Y+ +
Sbjct: 284 ---PYTFGFLNDEIVVLLNALGVSTDTILSKQTEYLQFLDEAYNGEPRAAFRFLSYQNEL 340
Query: 542 EPFLSMMPQTFHA-------------SNLLEL--RTRARIFIQNGQAMMGCLDEKG---- 582
+ ++ + H+ S +L R RI + + + G D G
Sbjct: 341 DLAEKLLIEGVHSVRKSLRSLVKTEYSRMLNKYEEQRCRIMLTQSRLLFGVCDPTGRDGG 400
Query: 583 -------------TLEYGQG--------LMVVAKKPCLHPGDMRVLRAVDVPALHHMVDC 621
TL+ G G ++V + PCLHPGD++ RAVDVP H+VDC
Sbjct: 401 MSRLPPGTCFVRITLD-GDGEPRTLINTEVLVTRNPCLHPGDLQKFRAVDVPEFSHLVDC 459
Query: 622 VLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIED 681
++FP +G RP + SG D DG+ +FV WD D IP + Y E+ ++T +D
Sbjct: 460 IVFPIRGSRPSADLMSGGDLDGDKFFVTWDPDIIPKKIAEAAMYPGVKERHHFGEITGDD 519
Query: 682 VEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAA 738
EYFA Y + SLG I N ++ +A + AMS C L +L S D + V A
Sbjct: 520 RAEYFARY-RSTSLGKIKNLYLKWARLK--GAMSPECQQLNRLFSQCVDGNHVKVPA 573
>gi|392597024|gb|EIW86346.1| RdRP-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 1218
Score = 145 bits (366), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 162/605 (26%), Positives = 250/605 (41%), Gaps = 119/605 (19%)
Query: 271 ILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKL---YSTVLSPQISST 327
++ TP+ GP SN V+R + + FLR+SF DE+ L + +S + S
Sbjct: 430 LIFTPTTQILEGPLPDQSNSVLRRFGHH-ECFLRVSFQDENCAPLRRDFEWSISELMKS- 487
Query: 328 NGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA----SRPE-LTAAD 382
R G + +KFE L +S S RE+++W A R E L AA
Sbjct: 488 ----------RFRPKFLKGHRVAGRKFEFLGYSMSGLREHSVWFVAPFQNDRGEWLNAAA 537
Query: 383 IRERMGDFREI-KNVTKYAARLGQSFASS--------REALHVDSNIG------------ 421
IR +GDF E+ K + AR Q+F+++ E VD I
Sbjct: 538 IRNLLGDFSELLKRPARLGARWSQAFSTTDPSVVLRQEEIFRVDDIISPRSKKVMTDGCS 597
Query: 422 KISAELAETVAKKC-------GYAIYTPSAFQIRYGGYK-------------VTLRNNMF 461
IS +LA + +K PSAFQ R GG K V LR +
Sbjct: 598 SISPDLARNIWEKLRTDRRQLSSLKNPPSAFQFRLGGAKGVVVQNPDLEGKVVCLRPSQL 657
Query: 462 KYKSESTSLDILANSKYQR-----------EGVARLRLDNVFERKQREVVARLDAI---L 507
K++ + D+ ++S+ + E VA L + Q + + +
Sbjct: 658 KFEGSELTFDVQSHSRSRPMYLNRPLIALLEHVAASGLVTRVLKLQHDDIMEAQGVRSSF 717
Query: 508 TDSSKVQEALEL------------MSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHAS 555
D+SK+ E L +SS N +V G + E + M +
Sbjct: 718 KDASKMLEVHGLGAPFRLGSLFHNLSSELNLHVWTSETPRGLR--NEIIIDAM-RCISTH 774
Query: 556 NLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ-----------------GLMVVAKKPC 598
L EL+ RA I + +MG DE L G+ G + V + P
Sbjct: 775 ALRELKYRAHIRVPGSYTLMGVSDEWDCLNPGEIFATVRDYRTGVYHAIEGPVAVTRSPQ 834
Query: 599 LHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPL 658
+HPGD++V++AV P L H+ + ++F +G+RP N G D DG+ + + D + P
Sbjct: 835 IHPGDIQVVKAVRRPELEHLTNVIVFSTRGDRPLPNYLGGGDLDGDDFNLILDENLFPTY 894
Query: 659 QFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYA-YSEPDKAMSNR 717
P +Y P K +EDV ++ DY +D +G+I AH+ +A +PD S
Sbjct: 895 NRIPGSYVSLPIKETPHICGVEDVVDFIFDYFESDLVGLISIAHLRFADLGDPD---SQE 951
Query: 718 CPDLVKLSSIVGDFSKTGVAATIPS--RLRVKIYPDFMEK------QDKTWYESQHIVGN 769
C L +L+S DF KTG R I PDF+ K Q+ +Y+S ++G
Sbjct: 952 CMTLAELASQAVDFPKTGTPVQFEDLPRFPDTIKPDFLAKEGEDPHQNSRFYKSPKLLGR 1011
Query: 770 LYREV 774
L+R +
Sbjct: 1012 LFRRI 1016
>gi|403374620|gb|EJY87268.1| RNA-directed RNA polymerase [Oxytricha trifallax]
Length = 1352
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 154/653 (23%), Positives = 262/653 (40%), Gaps = 160/653 (24%)
Query: 270 KILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNG 329
+I TP+ F + +NRV+R + DNF RL V++ L K + +
Sbjct: 453 RIYQTPTLTLFFANQREQTNRVIRQFKKYKDNFFRLVLVNDQLQKFHFGSM--------- 503
Query: 330 ERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASR--PELTAADIRERM 387
++ + + + ++ + IGD + L +SNSQ + +++WM S PE+ I R+
Sbjct: 504 -KQKEMLQHMKDLMKQELYIGDSLAQVLNYSNSQLKNHSVWMVCSTSIPEIQPNAIISRL 562
Query: 388 GDFREIKNVTKYAARLGQSFASSR--EALHVDSNIGKI---------SAELAETVA-KKC 435
G F K AR GQ F++++ L DSN+ I +LA+ ++
Sbjct: 563 GTFTNEGGNLKMFARRGQCFSTTKYVTKLDPDSNVEVIEDIERPKKNDPDLAQAEPDQRE 622
Query: 436 GYAIYTPSAFQIR--------YGGYKVTLRNNMFKYKSESTSLDILANSKYQREGVARLR 487
G ++T ++ G KV LR + K+ E+ L+++ S + + + R
Sbjct: 623 GNYVFTDGCGGVKGVLMLKPDLDGRKVQLRKSQIKFACENWGLEVIRCSTFSQGYLNRQV 682
Query: 488 L---------DNVF-------------ERKQREVVARLDAILTDSSKVQEALELMSSAEN 525
+ DNVF E+ + + +R +T SK ++ + +
Sbjct: 683 ILLLSCLGVDDNVFLSHLHTALENLNVEKVIKNLYSRSTVFMTSKSKNRK--DENENKSK 740
Query: 526 TNVLKELLNCGYKPDA-----------------EPFLSMMPQTFHASNL----------- 557
N +K L+ + P E +P+ +L
Sbjct: 741 ANEMKNELDVFFGPSKIFSPIFKHCLAQTLKQIEQVKKGLPEEMRTKDLHLSPKQVFFLE 800
Query: 558 -----------------LELRTRARIFIQNGQAMMGCLDEKGTLEYGQ------------ 588
+ L+ +ARI I+N ++G +DE GTL+ G+
Sbjct: 801 NEPIFDSILSNMVLGLAVNLKKKARIRIKNSCTLIGVIDETGTLDEGEIYLKINRGSYDY 860
Query: 589 ------------------------------------GLMVVAKKPCLHPGDMRVLRAV-D 611
G ++V K PC HPGD+R LRAV +
Sbjct: 861 DQIQEKLVDEYDEIENADGKKSRLAEINTWLDQIIEGDVIVTKNPCSHPGDIRKLRAVGE 920
Query: 612 VPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQF--QPTAYTPAP 669
H+ + ++F +KG RP ++ SG D DG++Y WD + LQ +P Y
Sbjct: 921 HSTFEHLTNVIVFSSKGCRPEQHKMSGGDLDGDVYLCMWDESLVNALQKIEKPAVYKKFE 980
Query: 670 EKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNR-CPDLVKLSSIV 728
E I D + + +Y A+Y D+LG + + H+ + + N+ C +L SI
Sbjct: 981 ESI-KTDSQKDTIVDYMAEYFEKDNLGHLAHLHLGLSDQLGVEGPYNKECVELSWYISIA 1039
Query: 729 GDFSKTG--VAATIPSRLRVKI--YPDFMEKQD--KTWYESQHIVGNLYREVN 775
DF+K G V + K+ +PD+MEK D + ES I+G LYR V+
Sbjct: 1040 VDFAKHGKHVDKDKYEMIEKKLDRWPDYMEKNDIGRKTVESPLILGQLYRAVD 1092
>gi|403337310|gb|EJY67868.1| RNA-directed RNA polymerase [Oxytricha trifallax]
Length = 1352
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 154/653 (23%), Positives = 262/653 (40%), Gaps = 160/653 (24%)
Query: 270 KILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNG 329
+I TP+ F + +NRV+R + DNF RL V++ L K + +
Sbjct: 453 RIYQTPTLTLFFANQREQTNRVIRQFKKYKDNFFRLVLVNDQLQKFHFGSM--------- 503
Query: 330 ERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASR--PELTAADIRERM 387
++ + + + ++ + IGD + L +SNSQ + +++WM S PE+ I R+
Sbjct: 504 -KQKEMLQHMKDLMKQELYIGDSLAQVLNYSNSQLKNHSVWMVCSTSIPEIQPNAIISRL 562
Query: 388 GDFREIKNVTKYAARLGQSFASSR--EALHVDSNIGKI---------SAELAETVA-KKC 435
G F K AR GQ F++++ L DSN+ I +LA+ ++
Sbjct: 563 GTFTNEGGNLKMFARRGQCFSTTKYVTKLDPDSNVEVIEDIERPKKNDPDLAQAEPDQRE 622
Query: 436 GYAIYTPSAFQIR--------YGGYKVTLRNNMFKYKSESTSLDILANSKYQREGVARLR 487
G ++T ++ G KV LR + K+ E+ L+++ S + + + R
Sbjct: 623 GNYVFTDGCGGVKGVLMLKPDLDGRKVQLRKSQIKFACENWGLEVIRCSTFSQGYLNRQV 682
Query: 488 L---------DNVF-------------ERKQREVVARLDAILTDSSKVQEALELMSSAEN 525
+ DNVF E+ + + +R +T SK ++ + +
Sbjct: 683 ILLLSCLGVDDNVFLSHLHTALENLNVEKVIKNLYSRSTVFMTSKSKNRK--DENENKSK 740
Query: 526 TNVLKELLNCGYKPDA-----------------EPFLSMMPQTFHASNL----------- 557
N +K L+ + P E +P+ +L
Sbjct: 741 ANEMKNELDVFFGPSKIFSPIFKHCLAQTLKQIEQVKKGLPEEMRTKDLHLSPKQVFFLE 800
Query: 558 -----------------LELRTRARIFIQNGQAMMGCLDEKGTLEYGQ------------ 588
+ L+ +ARI I+N ++G +DE GTL+ G+
Sbjct: 801 NEPIFDSILSNMVLGLAVNLKKKARIRIKNSCTLIGVIDETGTLDEGEIYLKINRGSYDY 860
Query: 589 ------------------------------------GLMVVAKKPCLHPGDMRVLRAV-D 611
G ++V K PC HPGD+R LRAV +
Sbjct: 861 DQIQEKLVDEYDEIENADGKKSRLAEINTWLDQIIEGDVIVTKNPCSHPGDIRKLRAVGE 920
Query: 612 VPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQF--QPTAYTPAP 669
H+ + ++F +KG RP ++ SG D DG++Y WD + LQ +P Y
Sbjct: 921 HSTFEHLTNVIVFSSKGCRPEQHKMSGGDLDGDVYLCMWDESLVNALQKIEKPAVYKKFE 980
Query: 670 EKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNR-CPDLVKLSSIV 728
E I D + + +Y A+Y D+LG + + H+ + + N+ C +L SI
Sbjct: 981 ESI-KTDSQKDTIVDYMAEYFEKDNLGHLAHLHLGLSDQLGVEGPYNKECVELSWYISIA 1039
Query: 729 GDFSKTG--VAATIPSRLRVKI--YPDFMEKQD--KTWYESQHIVGNLYREVN 775
DF+K G V + K+ +PD+MEK D + ES I+G LYR V+
Sbjct: 1040 VDFAKHGKHVDKDKYEMIEKKLDRWPDYMEKNDIGRKTVESPLILGQLYRAVD 1092
>gi|402468934|gb|EJW04010.1| hypothetical protein EDEG_01704 [Edhazardia aedis USNM 41457]
Length = 2457
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/185 (42%), Positives = 101/185 (54%), Gaps = 7/185 (3%)
Query: 589 GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFV 648
G +VVAK PCLHPGD+R+ AV L H+ D ++F KG RP N CSGSD DG+ Y V
Sbjct: 39 GSIVVAKNPCLHPGDVRIAEAVYKKELEHLQDVIVFSGKGSRPLFNMCSGSDLDGDQYAV 98
Query: 649 CWDHDRIPPLQFQPTAYTPAPEKILARD-VTIEDVEEYFADYIVNDSLGIICNAHVVYAY 707
WD IP P Y IL ++ VT+ DV ++ Y+ D LG+I AH+ A
Sbjct: 99 IWDKRLIPTKTVDPDTYDNTT--ILMKEMVTLNDVINFYVRYMKEDELGLIATAHL--AT 154
Query: 708 SEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIV 767
S+ M C L KL + DF KTG A +P L YPDFM Q + Y+S I+
Sbjct: 155 SDRLSIMDKECITLAKLFNKGVDFPKTGYVARLPDDLLPSSYPDFM--QQNSQYKSDKIL 212
Query: 768 GNLYR 772
G +YR
Sbjct: 213 GKMYR 217
>gi|336367253|gb|EGN95598.1| hypothetical protein SERLA73DRAFT_162413 [Serpula lacrymans var.
lacrymans S7.3]
gi|336379975|gb|EGO21129.1| hypothetical protein SERLADRAFT_417518 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1199
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 156/622 (25%), Positives = 262/622 (42%), Gaps = 119/622 (19%)
Query: 264 GLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDED-LGKLYSTVLSP 322
G + + + TP+++ GP I SNRV+R+Y D+F+R+ F DED L ++ L
Sbjct: 407 GRFFCHHVTFTPTRMLLEGPYIIQSNRVIRNYEGYEDHFIRVDFRDEDRLNYRWNREL-- 464
Query: 323 QISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA--SRPE--- 377
+ + RV L+NG + + FE LA+S+S RE+ +W S P
Sbjct: 465 -------DALAFLEPRVGGILKNGFELAGRDFEFLAYSSSALREHAVWFVNPFSHPTEGW 517
Query: 378 LTAADIRERMGDFRE-IKNVTKYAARLGQSFASSREALHVDSN----------------- 419
+T+ IR +GDF I + +KYAAR+ Q+F+++ ++ + +
Sbjct: 518 VTSESIRSGLGDFSGVIFHPSKYAARMAQAFSATDPSVKIHKSQWREIPDLGDETTCFTD 577
Query: 420 -IGKISAELAETV-------AKKCGYAIYTPSAFQIRYGGYK-------------VTLRN 458
+G IS EL + + + G PSA+QIR+ GYK + LR
Sbjct: 578 GVGTISRELGDMIWGALCEARRDHGEHTIKPSAYQIRFLGYKGMVAIDAQLTGVQMCLRP 637
Query: 459 NMFKYKSESTSL-DILANSKYQREGVARLRLDNV------------FERKQREVVARLDA 505
+M K+ + T +I ++R + L V F + Q EV+A
Sbjct: 638 SMNKFLGKETEYAEIEIARAFERPNLPHLNRPLVMVLEDRGAKRDSFVKLQDEVIAETRM 697
Query: 506 ILTDSSKVQEALELMSSAEN---TNVLKELLNCGYKPDAE--------PFLSMMPQTFHA 554
+ + LE + N + +L++L G + A+ PFL+
Sbjct: 698 ANDSIERFRSLLEEHNLGHNFRLSPILQQLNALGLELKADQTKEAMDSPFLAQTRSCAIN 757
Query: 555 SNLLELRTRARIFIQNGQAMMG--------------------------CLDEKGTLE--Y 586
L ++ ARI I ++G C+ + G +E +
Sbjct: 758 HVLRSVKHEARIQIPKSYMLVGVADEGPAYVNAGRDNVFCLPEGKIYACVQKPGDMEPIW 817
Query: 587 GQGLMVVAKKPCLHPGDMRVLRAVDVPA------LHHMVDCVLFPAKGERPHTNECSGSD 640
+GL V+++ P +HPGD++ + A+ P H+ + V+ P+ G R + G D
Sbjct: 818 LEGLCVISRSPVIHPGDVQRVYAIGKPPANKLCLFSHLKNVVVLPSVGARSLASCLGGGD 877
Query: 641 QDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICN 700
DG++Y V + P Y L R TIEDV ++ +YI +D +G++ +
Sbjct: 878 LDGDLYEVIQHSPFLVTEHHDPAEYPAGSIFTLDRPSTIEDVCDFVVEYIHSDVVGLVSD 937
Query: 701 AHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIP--SRLRVKIYPDF----ME 754
H+V A + C L L S D+ K G+ I R + PD+ ++
Sbjct: 938 KHIVIADQSKHGTLDQNCLKLSALHSQAVDYPKNGIKVDISFLPRSLIPYKPDWHAAEVD 997
Query: 755 KQDKT-WYESQHIVGNLYREVN 775
KT +YES +G LYR +
Sbjct: 998 SPRKTDYYESSRALGYLYRNIT 1019
>gi|389748402|gb|EIM89579.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1346
Score = 143 bits (360), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 160/650 (24%), Positives = 272/650 (41%), Gaps = 145/650 (22%)
Query: 259 VALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSY----PDEIDNFLRLSFVDEDLGK 314
+ L G Y + I TP++ GP + SNRV+R Y P +NF+R+ F DED
Sbjct: 414 LKLSKGHFYCHHITFTPTRTILEGPNPTQSNRVIRKYQEIDPTFTENFIRVDFRDEDR-- 471
Query: 315 LYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMF-- 372
S + T + +RV L+NG + + FE LA+S S RE+ +W
Sbjct: 472 -LSYRWDRDVDGT-----YFLQQRVGHILKNGFELAGRDFEFLAYSTSALREHAVWFVHP 525
Query: 373 ----ASRPE-----LTAADIRERMGDFRE-IKNVTKYAARLGQSFASSREA--------- 413
+S P + IR+ +GDF I+ +KYAAR+ Q+F ++ +
Sbjct: 526 FHLPSSHPSHSGTYVNGHYIRQSLGDFSNVIRQPSKYAARIAQAFTATDPSVKVTRDQWE 585
Query: 414 -----------LHVDSNIGKISAELAETV-AKKC------GYAIYTPSAFQIRYGGYK-- 453
LH D +G IS EL + A+ C G PSA+QIR+ GYK
Sbjct: 586 EMEDIGDDDRYLHTD-GVGTISLELGGMIWAELCESRLDHGGNTVRPSAYQIRFLGYKGM 644
Query: 454 -----------VTLRNNMFKY---KSESTSLDILANSKYQREGVARLR------LDNVFE 493
+ LR +M K+ E L+I ++R L L++
Sbjct: 645 VVIDHRLVGIKMRLRPSMRKFVVDNDEDAWLEIA--RAFERPNSFSLNRALVMILEDRGV 702
Query: 494 RKQREVVARLDA---ILTDSSKVQEALELMSSA------ENTNVLKELLNCGY------- 537
RK+ + + I T S +++ + L+ + +L++L+ G
Sbjct: 703 RKESFISLQEQTKSLIYTSSDSIEKFVSLLRTHGMGFGYHLPFILEQLVKLGLDFKETNR 762
Query: 538 ---KPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDE------KG------ 582
K FL + + L +++ +A+I + ++GC DE +G
Sbjct: 763 DGSKAIENAFLGRVLRFAMNGCLRDIKHKAQIPVPGSYKLVGCADEGLAYIREGLDKDSV 822
Query: 583 -TLEYG-----------------QGLMVVAKKPCLHPGDMRVLRAVDVPA------LHHM 618
TL G +G ++++ P +HPGD++ + AV P +
Sbjct: 823 YTLPAGCIFACVQEGPGSETKFLKGPCMISRSPVVHPGDIQRVWAVGEPPKDKICFFKDL 882
Query: 619 VDCVLFPAKGE------RPHTNECSGSDQDGEIYFVCWDHDRI-PPLQFQPTAYTPAPEK 671
+ V+ P+ + R + G D DG+ Y + D+ + P + QP YT A +
Sbjct: 883 KNLVVLPSVADPSSDTDRSLASMLGGGDLDGDQYDIIIDNGSLMPEVHSQPADYTGAGTR 942
Query: 672 ILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDF 731
L RD T++D+ ++ +YI +D LG++ + H+ A + +RC L +L S D+
Sbjct: 943 TLDRDATVDDICDFIVEYINSDVLGLLSDKHLTIADQSREGTFDHRCMLLAELCSQAVDY 1002
Query: 732 SKTGVAATIPSRLR--VKIYPDFMEKQ-----DKTWYESQHIVGNLYREV 774
K G I R + PD+ + + + +YES +G+L+R +
Sbjct: 1003 PKNGKPVDISDLPRSLSRFKPDWHQAEVSGPRENDYYESDRALGHLFRNI 1052
>gi|390597813|gb|EIN07212.1| RdRP-domain-containing protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 1217
Score = 142 bits (359), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 155/683 (22%), Positives = 276/683 (40%), Gaps = 160/683 (23%)
Query: 258 AVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYS 317
A G+ I PS++ GP + NRV+R Y ++F+R+ F +ED G Y
Sbjct: 396 ATTCPSGMFSCYHITFCPSRMILEGPFPTQGNRVIREYSGYEEHFVRVDFREED-GLQYR 454
Query: 318 TVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA---- 373
+ R+ + ERV L+ G + + F+ LA+S+S +++ +W
Sbjct: 455 W-------DREVDCRSFLAERVGRILKEGFELAGRHFQFLAYSSSALKQHAVWFVHPFEH 507
Query: 374 -SRPELTAADIRERMGDF----------REIKNV------TKYAARLGQSFASSREALHV 416
+ + A IR+R+GDF R+ K + +KYAAR+ Q+F ++ ++ +
Sbjct: 508 HEKGSVDAYIIRDRLGDFSGAIDNNNETRDAKTIQLRMQPSKYAARMAQAFTATDPSVRI 567
Query: 417 DSN------------------IGKISAELAETV-AKKCGYAIY------TPSAFQIRYGG 451
+ + G IS +LA+ + A C Y +P +QIR+ G
Sbjct: 568 NEDQWQEIPDLGKEPHLHTDGCGTISRKLADMIWAALCKDRPYFQACKSSPDCYQIRFLG 627
Query: 452 YK-------------VTLRNNMFKYKSEST-SLDILANSKYQREGVARLR------LDN- 490
YK + LR +M K+++ T S +I + + L L++
Sbjct: 628 YKGIVTVDETLEGEQMCLRPSMNKFRAHKTPSAEIEIAKPFWKPTQVNLNRALIMILEDR 687
Query: 491 -----VFERKQREVVARLDAILTDSSKVQEALELMS---SAENTN-----VLKELLNCGY 537
F + Q E V ++ T S + + ++S + +N +++ L G+
Sbjct: 688 GVSWKCFMKLQDEAVRDIN---TASFSIDNFVRMLSDRGAGLGSNYRLLYIMRNLAELGF 744
Query: 538 --------KPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLE---- 585
+P + PF+ + + L E++ A I +++ + G DE E
Sbjct: 745 DFKQRLRVQPLSHPFILRLVEFIRHHLLREIKHGASIPLRDAYLLPGVADEGPAYEARGH 804
Query: 586 ------------------------YGQGLMVVAKKPCLHPGDMRVLRAVDVPA------L 615
+ +G V+ + P +HPGD++ + A+ P
Sbjct: 805 QNVFKLAENRIFACVQGPDDVEPKWLKGNCVIWRSPVVHPGDIQRVYAIGKPPEDQLCFF 864
Query: 616 HHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILAR 675
+ + V+ P+ GER + G D DG+ Y V +P Q P Y P L R
Sbjct: 865 SRLKNVVVLPSVGERSLASCLGGGDLDGDEYCVSMLPTLLPTEQQPPAEYPPVETLTLDR 924
Query: 676 DVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTG 735
I+D+ ++ +Y+ +D LG++ + H+V A D +C L +L S D++K G
Sbjct: 925 PAEIDDICDFIVEYVHSDVLGLLSDKHLVIADQSKDGVRDEKCLRLAELCSQAVDYAKNG 984
Query: 736 VAATIPSRLR-----VKIYPDF-----MEKQDKTWYESQHIVGNLYREVNGIAPST---- 781
+A + R + PD+ + + +YES +G+LYRE+ P
Sbjct: 985 IAINLAKEKRAMKQLIPFKPDWHAAEIISPRSTDYYESSRALGHLYREIRLTEPEEDYPE 1044
Query: 782 -------------TTIKSFAKEG 791
T+K FAK G
Sbjct: 1045 AHGVHNAISGALRKTLKRFAKTG 1067
>gi|409051493|gb|EKM60969.1| hypothetical protein PHACADRAFT_168316 [Phanerochaete carnosa
HHB-10118-sp]
Length = 968
Score = 142 bits (359), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 140/511 (27%), Positives = 225/511 (44%), Gaps = 98/511 (19%)
Query: 271 ILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDE-DLGKLYSTVLSPQISSTNG 329
+ VTP+ GP SNRV+R+Y + D F+R++FVDE DL + +G
Sbjct: 433 VTVTPTTHRPEGPYPERSNRVMRTYSNNHDCFVRVNFVDETDLQFRFD-------REVDG 485
Query: 330 ERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLW-----MFASRPELTAADIR 384
R I RV L NGIV+ + FE LA+S S +E+ +W + + A I
Sbjct: 486 --RAFIKRRVGEVLANGIVVAGRYFEFLAYSQSALKEHAVWFVKEFLLPDGTVVNACTII 543
Query: 385 ERMGDFREIKNV----TKYAARLGQSFASSREALHVDS--------------------NI 420
+GDF + + +Y AR+ Q+F ++ ++ V++ +
Sbjct: 544 AGLGDFTRDRQLIYCPARYGARISQAFTATDSSVTVEAEEVIEVPDIEDPTGTWCFTDGV 603
Query: 421 GKISAELAETV-----AKKCGYAIYT-PSAFQIRYGGYK-------------VTLRNNMF 461
G +S LA + A++ G T P A QIR+ G K + LR +M
Sbjct: 604 GTMSVRLAREIWKVLAARRRGSRWQTYPRALQIRFQGSKGMLSVDHTLSGRAICLRPSMI 663
Query: 462 KYKSESTSLDILANSKYQREGVARLR--LDNVFER--KQREVVARL-DAILTDSSKVQEA 516
K+++ +++ I + R G L L + E Q EV L DA + D+ + E+
Sbjct: 664 KFEALNSN-QIEVARAFNRPGPFYLNRPLIMILEHLGVQHEVFQDLQDAAVMDAQQSVES 722
Query: 517 LE----------LMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLL-ELRTRAR 565
LE L +S T+V L P E F +++L EL+ AR
Sbjct: 723 LEKAARLLETFGLGASFRLTSVFLSLHKLAVGPLTEDNFWRKMMDFAVNHVLRELKHHAR 782
Query: 566 IFIQNGQAMMGCLDEKGTLE-----------------YGQGLMVVAKKPCLHPGDMRVLR 608
I + N ++G D G LE Y G ++V + P +HPGD++V++
Sbjct: 783 IPVPNAWNLVGVADVHGYLEEHEVFGCIYPTDGTGPIYLDGRVLVTRSPTIHPGDVQVVQ 842
Query: 609 AVDVPA------LHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQP 662
+ P + + ++F KG RP + G D DG+ Y V +PP + P
Sbjct: 843 GIGRPPPGSPFERESLRNTLVFSVKGTRPLPSYLGGGDLDGDEYRVTMLDPLLPPRTYLP 902
Query: 663 TAYTPAPEKILARDVTIEDVEEYFADYIVND 693
+YTPA +K+L R T++DV ++ +YI +D
Sbjct: 903 ASYTPAEKKLLDRPSTMKDVADFVMEYINSD 933
>gi|113205191|gb|AAT39934.2| RNA-directed RNA polymerase-like, identical [Solanum demissum]
Length = 190
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 105/166 (63%), Gaps = 5/166 (3%)
Query: 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKG-SRAHAIVEFTTVEAADF 59
M K I ++GF +L S + VK FLE+HTG GT+ +EV Q+KG SRA A V+F +AD
Sbjct: 1 MGKTIQVFGFPNLLSAEVVKLFLEKHTGYGTICALEVKQSKGGSRAFAKVQFVDNISADK 60
Query: 60 IKCLARERLSYGNSFLKASSAKRRTPHFAKRTPHYKLGGDLKLNFGCQISKDKFSVFWSQ 119
I LA +RL +G+S+LKA K H + LNFGCQIS+DKF+V S
Sbjct: 61 IINLASKRLYFGSSYLKAWEMKTDIVQLRAYVDHMD---GITLNFGCQISEDKFAVLGST 117
Query: 120 ENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSGHS 165
E VS+K L+KF FFLS S DYKL+LS E+IWQ+ LHRP G +
Sbjct: 118 E-VSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQN 162
>gi|171681273|ref|XP_001905580.1| hypothetical protein [Podospora anserina S mat+]
gi|170940595|emb|CAP65823.1| unnamed protein product [Podospora anserina S mat+]
Length = 1721
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 139/536 (25%), Positives = 221/536 (41%), Gaps = 94/536 (17%)
Query: 289 NRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRT----RIYERVLSTLR 344
NR +R P ++ FL +S + S +ST+ + + + LR
Sbjct: 70 NRAIRGEP--LNKFLVVSIAELRAPPGRRPPRSAAATSTDDSLQPSTPRECTDYAIRLLR 127
Query: 345 NGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARLG 404
GI I + SNSQ + T + +A PE + + + +GDF ++K V K A R+
Sbjct: 128 TGISIQGVHYNFYGHSNSQLKSRTCFFYAGSPEEISRKVND-LGDFSKMKTVAKKAKRIS 186
Query: 405 QSFASSREALHV------------------DSNIGKISAELAETVAKKCGYAI----YTP 442
F++ A+ + G IS LA +A++ YTP
Sbjct: 187 LLFSTGSVAMLIPPERVEDIPDIETADYIFTDGCGLISPNLARELARRDRIIFRNRRYTP 246
Query: 443 SAFQIRYGGYK-----------------------VTLRNNMFKYKS-ESTSLDILANSK- 477
S FQIRY GYK + LR +M K+ + S ++ SK
Sbjct: 247 SVFQIRYRGYKGVVEVDQTMPRPKNKSSDAPPIWLKLRKSMKKFSGGDDYSFSVVEYSKP 306
Query: 478 -----YQREGVARLRLDNV----FERKQREVVARLDAILTDSSKVQEALELMSSAENTNV 528
E + L + F +KQ E L+ D + A +S A +
Sbjct: 307 YTYGYLNDESILLLSALGITHKTFHQKQNEHFQFLEEATRDP---RAAFRFLSYANMPEM 363
Query: 529 LKELLNCGYKPDAEPFLSMMPQTFHASNLLELR--TRARIFIQNGQAMMGCLDEKGTLEY 586
+++L A+ + + + + +L R + RI I + + G D L+
Sbjct: 364 AEKILMADNVEHAQSKVKALVKAEYG-KMLNKRDDQKCRILIPQSRLLFGVCDAWDCLKE 422
Query: 587 GQ-----------------GL-MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKG 628
G+ G+ ++V + PCLHPGDM+ R V+ P L H+ DC++F ++G
Sbjct: 423 GECAVKVTLFEDGQPAALKGMEVLVTRNPCLHPGDMQKFRVVERPELAHLTDCIVFSSRG 482
Query: 629 ERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFAD 688
RP + SG D DG+ +FVCWD IP +P Y A E I + +T +D YFA
Sbjct: 483 RRPAADLMSGGDLDGDTFFVCWDKSVIPSTMSEPAKYPGAREAISFKAITDDDRLVYFAK 542
Query: 689 YIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRL 744
Y N SLG + ++ +A + M+ C +L +L S D G IP +L
Sbjct: 543 Y-NNMSLGRVKKLYLAWARAR--GPMAPECQELNRLFSQCVD----GTIIRIPPKL 591
>gi|290993029|ref|XP_002679136.1| predicted protein [Naegleria gruberi]
gi|284092751|gb|EFC46392.1| predicted protein [Naegleria gruberi]
Length = 464
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 117/469 (24%), Positives = 192/469 (40%), Gaps = 89/469 (18%)
Query: 387 MGDFREIKNVTKYAARLGQSFASSREALHVD---------------SNIGKISAELAETV 431
+G+F IK +YAAR+GQ F+ + E + + +G+IS E A +
Sbjct: 1 LGNFSHIKVKARYAARIGQCFSHTYEGISKEYEIIPDITRNNYVFTDGVGRISLEFAVEL 60
Query: 432 AKKCGYAI----YTPSAFQIRYGGYK--VTLRNNMFKYK---------------SESTSL 470
KK + Y PSAFQ R GG K V + ++ Y S S+
Sbjct: 61 TKKFQISFAGKEYIPSAFQFRMGGLKGVVVVDPDIHLYSDLDLLLSKSQEKFIDSSSSEF 120
Query: 471 DILANSKYQREGVARLRL----------DNVFERKQREVVARLDAILTDSSKVQEALELM 520
+++ SK R +L D+VF + + + + D ++ L
Sbjct: 121 ELITYSKRNRFASLNRQLIALLSSNKVSDSVFLQLLDRDLEEIKKLFNDKKYMRRVLRKS 180
Query: 521 SSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDE 580
+K++ + Y F ++ ++ RI + +MG +D
Sbjct: 181 QDNIVGKNMKKVASLNYLDSQYDFSKVVQSGEDIKFFYQIEPNGRIILDKALLLMGVVDF 240
Query: 581 KGTLEYGQ----------------------------GLMVVAKKPCLHPGDMRVLRAVDV 612
G LE + G + + + PCLHPGD+R +AV
Sbjct: 241 YGVLEEDEVFIQLSELENSDSDLYDDNCFVNGGTLSGTVAITRSPCLHPGDIRKFKAVTD 300
Query: 613 P----ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWD-----HDRIPPLQFQPT 663
P L H+ D ++F KG RP N+ SG D DG+ + V WD + PP+ ++
Sbjct: 301 PEKISKLSHLRDVIVFSQKGNRPAANKMSGGDYDGDFFQVFWDPLLVNFEEYPPMNYEGL 360
Query: 664 AYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVK 723
P EK D + + E+ +YI+ND+LG++ H+ + E D S C L K
Sbjct: 361 ---PPEEKHDGCDYRV--IREFLTEYIINDNLGVVAFLHLEHYDKEGDGLRSEPCLKLAK 415
Query: 724 LSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQ-DKTWYESQHIVGNLY 771
S D++KTGV +P+ L P +M + K Y S+ ++G++Y
Sbjct: 416 HHSYQVDYAKTGVRKPLPTELFSNSRPHYMPRVFGKKTYHSEDVIGSIY 464
>gi|342319755|gb|EGU11702.1| RNA-directed RNA polymerase 2 [Rhodotorula glutinis ATCC 204091]
Length = 1904
Score = 139 bits (351), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 150/595 (25%), Positives = 247/595 (41%), Gaps = 101/595 (16%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
V ++ T ++ GP + +N +VR+Y + F+ ++ ED SS
Sbjct: 1106 VRQVTFTATRALLFGPYLGDTNSIVRAYA-RPELFVSVAVRHED------------GSSL 1152
Query: 328 NGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA-----SRPELTAAD 382
+ I R R+G +G + + LA+S+S + ++ + + +T
Sbjct: 1153 RDRDDSLIASRFSPLFRDGFELGGRSWRFLAWSSSGLKSSSCFFMSPFRLDDETLITPTF 1212
Query: 383 IRERMGDFREIKNV---TKYAARLGQSFASSREALHV-------------------DSNI 420
I +GDF + KY AR+ Q+F+SS+ +L + +
Sbjct: 1213 IHRTIGDFTGSETALIPAKYMARIAQAFSSSKPSLTLRPDQMLSIEDITAPDGSCFSDGV 1272
Query: 421 GKISAELAETVAKKCGYAI----YTPSAFQIRYGGYK-------------VTLRNNMFKY 463
G IS LA V +K G + P+ FQ R GG K V LR + K+
Sbjct: 1273 GLISPSLANDVVEKLGIKLGKEERPPTCFQFRLGGAKGTLQVDPTLEGKVVALRPSQVKF 1332
Query: 464 KSESTSLDIL----ANSKYQREGVARLRLDN------VFERKQREVVARLD---AILTDS 510
+S TSL+I A Y + L L+N VF + Q + A++ A L +
Sbjct: 1333 RSTLTSLEIAGTFEAGPGYLNRPLITL-LENLGIPADVFLKLQAKATAKIRKSRASLPSA 1391
Query: 511 SKVQEALELMSSAENTNVLKELLNCGYKPDA---EPFLSMMPQTFHASNLLELRTRARIF 567
K+ L S + L L DA PF++ L +++ ARI
Sbjct: 1392 VKLPRDWSLASGTRFVSALNLLAKDQATRDAAFANPFVARCLDASVVHALRDIKYLARIP 1451
Query: 568 IQNGQAMMGCLDEKGTL----------------EYGQGLMVVAKKPCLHPGDMRVLRAVD 611
+ ++G +D G L EY QG + +++ P HPGD R++RAV
Sbjct: 1452 LPGCYNLVGVVDVDGCLAQDEIYARISRPDGSTEYLQGTIAISRSPTNHPGDCRLVRAVG 1511
Query: 612 -VPA-----LHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ---FQP 662
+P + + +CV+FP G R + +G D DG++Y + + + P +P
Sbjct: 1512 KLPKGAGERIRGLTNCVVFPVHGPRSLPSMLAGGDLDGDVYLLLTEASGLVPSPDRIAEP 1571
Query: 663 TAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLV 722
AY AP L R+V++ED E+F YI D G++ ++ A S + C L
Sbjct: 1572 AAYDAAPTVKLDREVSVEDGGEFFFKYITQDRTGLVATRQLLLADSHAEGLFHPDCLKLA 1631
Query: 723 KLSSIVGDFSKTG--VAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVN 775
+L S D +K+G V R+ + PDF+ Y S +G+LYR ++
Sbjct: 1632 QLHSNCVDAAKSGSFVQQHAVPRVTQRGLPDFLTNDAPDSYRSSKALGHLYRAID 1686
>gi|281205109|gb|EFA79302.1| hypothetical protein PPL_07720 [Polysphondylium pallidum PN500]
Length = 3481
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 129/470 (27%), Positives = 206/470 (43%), Gaps = 103/470 (21%)
Query: 261 LDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVL 320
L+ ++ K VTPS++ F P + +NR +R + D FL + +E + S
Sbjct: 1135 LNANFCWIKKAYVTPSRILFQRPLMVQTNRAIRLFGP--DRFLMVQITEETISD--SIDY 1190
Query: 321 SPQISSTNGERRTRIYERVLSTLRNGI-VIGDKKFETLAFSNSQERENTLWMFA------ 373
P IS + +L L +GI V G ++ L +SNSQ R+NT W +
Sbjct: 1191 QPLIS-----------KLMLDKLIDGIAVAGYGQYHFLGYSNSQLRKNTCWFYCPDAIDS 1239
Query: 374 --SRPELTAADIRERM-GDFREIKNVTKYAARLGQSFASSR-------EALH-----VDS 418
P L D+++ + GD +Y L F S+ E +H V +
Sbjct: 1240 LDDAPSLD--DVKQILIGDTSIYTEPRQYLRSLSLVFPSTTPSLLIPAEHIHEVPDVVSA 1297
Query: 419 NIGKISAELAETVAKKCGYAIYT-------PSAFQIRYGGYK------------VTLRNN 459
N G+I ++ + K+ + AFQIR GYK + LR +
Sbjct: 1298 NTGQIFSDGIGYIGKRVALQVIEFASLPEETCAFQIRIAGYKGVVTIHPTIDDGIYLRPS 1357
Query: 460 MFKYKSESTS-----LDILA----NSKYQREGVARLRL-----DNVFERKQREVVARLDA 505
M K++++ T L+I++ N + V L D F R Q+E + L
Sbjct: 1358 MKKFQADLTQQHNCILEIISINGDNPCHLNRQVINLLSGLGVPDQYFLRLQKEALMDLAD 1417
Query: 506 IL---TDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRT 562
+L +S + E L + + E KE L ++P + + + ++ E
Sbjct: 1418 LLHNPAESIRCSEDLPWLRTIE-----KEDLR------SDPMIRSLVHLVYQKSIAEYSD 1466
Query: 563 RARIFIQNGQAMMGCLDEKGTLEYGQ-----------------GLMVVAKKPCLHPGDMR 605
+ I I NG+ ++G LDE G LE GQ G + V K PCLHPGD+R
Sbjct: 1467 KCFIPIANGKTIIGVLDETGLLEAGQVYINIYNTKNGQSMVIQGAVAVCKNPCLHPGDVR 1526
Query: 606 VLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRI 655
+L+ D+ L H+ + V+F A+G+ P +CSGSD DG+ YF+C+D + I
Sbjct: 1527 ILQGTDIELLSHLKNVVVFSARGDNPDFKKCSGSDLDGDRYFICYDPEVI 1576
>gi|449547217|gb|EMD38185.1| hypothetical protein CERSUDRAFT_113336 [Ceriporiopsis subvermispora
B]
Length = 1207
Score = 139 bits (349), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 160/658 (24%), Positives = 271/658 (41%), Gaps = 140/658 (21%)
Query: 248 VSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSF 307
V Q+ P + + GG + TP+K+ GP + SNRV+R Y D F+R+ F
Sbjct: 388 VVPTQYGLEP-LQISGGNFTCYHVTFTPTKMVLEGPYVIQSNRVIRRYVGFQDRFIRVDF 446
Query: 308 VDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQEREN 367
DED + Y SS +++RV LR G + ++FE LA+S S RE+
Sbjct: 447 RDEDRLQ-YRWAKEVDGSSL-------LHDRVGGILRKGFDLAGRRFEFLAYSTSALREH 498
Query: 368 TLWMFA--SRPE---LTAADIRERMGDF---REIKNVTKYAARLGQSFASSREALHVDSN 419
+W P +TA IRE +GDF + IK +KYAAR+ Q+F ++ ++ + +
Sbjct: 499 AVWFMNPFEHPREGLVTAQGIRESLGDFSGSKVIKQPSKYAARMAQAFTATDPSVSITRD 558
Query: 420 ------------------IGKISAELAETV----------AKKCGYAIYTPSAFQIRYGG 451
+G ISAEL + + K+ G PSA+QIR+ G
Sbjct: 559 QWETVPDLGEDPYLYTDGVGTISAELGDMIWDALCAASPDGKRRG---VKPSAYQIRFLG 615
Query: 452 Y-------------KVTLRNNMFKYKSEST-----------SLDILANSKYQREGVARLR 487
+ K+ LR +M K+K+ + + D R V L
Sbjct: 616 FKGVVAVDERLQGIKMRLRPSMDKFKARADEEAEAKIEIARAFDYPGTCYLNRPLVTVLE 675
Query: 488 LDNV----FERKQREVVARLDAILTDSSKVQEALELMSSAENTN------VLKELLNCGY 537
V F R Q + A I T S + +A+ ++ + N +L+ L N G
Sbjct: 676 DRGVDKSAFMRLQERIKAE---IYTASDSLAQAISVLKANSIGNGYKLGFILQGLKNIGM 732
Query: 538 KPDAEPFLSMMPQTF------HASN--LLELRTRARIFIQNGQAMMGCLDEKGTLE---- 585
E + ++ +F +A N L ++ ARI I ++G DE E
Sbjct: 733 GLPYEKNVQVLNDSFIDRLLQYAKNYVLRNIKHDARIPIPESYLLVGIADEGPAYEAEGC 792
Query: 586 ------------------------YGQGLMVVAKKPCLHPGDMRVLRAVDVPA------L 615
Y +G ++V + P +HPGD++ + A+ P
Sbjct: 793 ENVYILPEGHIYACVQHPDDPEPIYLEGNIMVTRSPTVHPGDVQQVTAIGKPPEGKICFF 852
Query: 616 HHMVDCVLFPAK----GERPHT-NECSGSDQDGEIYFVCWDHDRIPPLQFQ-PTAYTPAP 669
++ + V+ P+ G+ P + C G + + + PL+ Q +Y A
Sbjct: 853 RNLKNVVVLPSTGNCGGDCPRSLASCLGGGDLDGDLYQVVKYAPLVPLESQLAGSYESAG 912
Query: 670 EKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVG 729
L RD T++D+ ++ +YI +D LG++ + H++ A C +L +L S
Sbjct: 913 THTLDRDSTVDDIIDFIVEYIDSDVLGLLSDRHLMIADQSKYGVNDPSCLELARLCSQAV 972
Query: 730 DFSKTGVAATI--PSRLRVKIYPDFMEKQDK-----TWYESQHIVGNLYREVNGIAPS 780
D+ K G+ R + P++ + +D +YES +G L+R ++ P+
Sbjct: 973 DYPKNGIPVDKGDAPRTLLPYKPNWKQAEDNDSRPTDYYESNRALGELFRNISITEPN 1030
>gi|393235346|gb|EJD42902.1| RNA-directed RNA polymerase [Auricularia delicata TFB-10046 SS5]
Length = 1654
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 149/530 (28%), Positives = 226/530 (42%), Gaps = 107/530 (20%)
Query: 288 SNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGI 347
SNR++R+ D+ F+ +SF + + + Y+TV + + L G+
Sbjct: 49 SNRILRN--DDPSKFISVSFREFRMPE-YTTV-----------------DYIKRFLAAGL 88
Query: 348 VIGDKKFETLAFSNSQERENTLWM--FASRPELTAADIRERMGDFREIKNVTKYAARLGQ 405
+ D+++ S SQ RE ++ AS EL A GDF I NV K A R+G
Sbjct: 89 FLDDRQYRFYHHSPSQLRERGCFLREAASDEELDARIYS--YGDFSRINNVAKRAKRIGL 146
Query: 406 SFASSREALHVDSNI------------------GKISAELAETVA--KKCGY--AIYTPS 443
F+ + ++D G +S LA ++ KK + A YTPS
Sbjct: 147 LFSGASIDYNLDPQFTEDIDDIIVGNELFSDGCGLVSRRLAVALSRQKKIVFRGARYTPS 206
Query: 444 AFQIRYGGYKVTL----------------RNNMFKYKSE-STSLDILANSKYQREG---- 482
FQIRY GYK L R +M K+ + + ++ S G
Sbjct: 207 VFQIRYRGYKGVLMLHPELDRSHGPLAQFRRSMKKFNATLDDTFTVVGYSTPYAFGRLNN 266
Query: 483 -----VARLRLDN-VFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNCG 536
++ L + N KQ E D +L S V A++L+S + + + +L G
Sbjct: 267 DVIVLISSLGITNETLLAKQAEY---FDWLLRAVSDVSCAVDLLSCLGDFAMAERVLLDG 323
Query: 537 YKPD-----AEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQGLM 591
D +S ++F N R R+R+ I+ + + G D G L G+ +
Sbjct: 324 LDADHVQKALAGIVSREVKSFRKDNG---RLRSRMIIRKSRLLFGVCDPFGVLREGEVHV 380
Query: 592 -----------------VVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTN 634
+V K PCLHPGD+ L AV+ P L H+VDCV+FP+ G+R +
Sbjct: 381 RVSAGRQPATTLTHCDVLVVKNPCLHPGDVLKLHAVENPRLAHLVDCVVFPSVGKRAPAS 440
Query: 635 ECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDS 694
SGSD DG+ +FVCWD D IP P Y E+I +R ++ +D+ +FA Y S
Sbjct: 441 MTSGSDLDGDQFFVCWDSDIIPSKTTDPYLYPKGKEQI-SRSISRQDLAAHFAAY-SGAS 498
Query: 695 LGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRL 744
+ + H +A AM C +L L S+ D K V P RL
Sbjct: 499 IAKVAGLHSKWARHSQQGAMCTECLELSALHSLAVDGGKIKV----PKRL 544
>gi|330798142|ref|XP_003287114.1| hypothetical protein DICPUDRAFT_54684 [Dictyostelium purpureum]
gi|325082892|gb|EGC36360.1| hypothetical protein DICPUDRAFT_54684 [Dictyostelium purpureum]
Length = 2341
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 171/657 (26%), Positives = 273/657 (41%), Gaps = 128/657 (19%)
Query: 267 YVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISS 326
+V ++ VTPS++ F P++ +NR +R + E NF+ L +E L L L+P
Sbjct: 1181 FVKEVFVTPSRIIFKEPKLERTNRALRRFGSE--NFILLKVANESLEPLRG--LNP---- 1232
Query: 327 TNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRER 386
+ +Y + +GI + K+ + SNSQ + + W + IR
Sbjct: 1233 -----KHPLYTTIQKYFDSGIELSGTKYYYVGNSNSQHSDFSAWFVNDLAHVFL--IRNW 1285
Query: 387 MGDFREIKNVTKYAARLGQSFASS--------REALHVDSNI----------GKISAELA 428
D + K+A L F ++ R +D I G I +L+
Sbjct: 1286 SQDQSLVMQPRKFARGLSLMFTTTSPSFVIPQRNYYIIDDIISNGHNFTEGCGFIGKDLS 1345
Query: 429 ETVAKKCGYAIYTPSAFQIRYGGYK-------------VTLRNNMFKYKS---------E 466
+ + Y T A+QIR GG K V +R + K K E
Sbjct: 1346 RRINELFHYKSST-CAYQIRIGGAKGMLVVSETVDPDGVYIRKSQIKTKPAHYDEHRTLE 1404
Query: 467 STSLDILANSKYQREGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEALELMSS 522
S+ +N K R+ +A L D+VF Q + L + L D ++ L+
Sbjct: 1405 ICSISTSSNCKLNRQVIALLSCKGVKDHVFYSIQDRYMNYLASTLNDVEYSRKVLDEFFK 1464
Query: 523 AENTNVL------KELLNCGYKPDAEPFLSMMPQTFH-----ASNLLELRTRAR------ 565
N N L + +L YK E Q H + NLL + R
Sbjct: 1465 DLNDNELLQDNFIRRILITHYKLSIE----RAQQKSHLDIEKSRNLLGVTDPTRLLPADC 1520
Query: 566 IFIQNGQAMMGCLDEKGTLEYG--QGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVL 623
IFIQ Q +E G+ Y +G +VV K PC HPGD+R+LRAV++ ALHH+ D ++
Sbjct: 1521 IFIQIEQE-----EEDGSRHYVPLKGDVVVTKNPCTHPGDLRILRAVNIEALHHLKDVIV 1575
Query: 624 FPAKGERPHTNECSGSDQDGEIYFVCWDHD------RIPPLQFQPTAYTPAPEKILARDV 677
F G P+ E SGSD DG+ YFVC+D+D IP L T P P+ +
Sbjct: 1576 FSTYGNVPNFKEISGSDLDGDRYFVCFDNDLMINGNSIPYLGDNLTKEDP-PQNVYNDPK 1634
Query: 678 TIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVA 737
+ V +Y A+ + +G + NAH+ A S+ A S +L D KTGV
Sbjct: 1635 LL--VGQYLAN-VEKQKIGTLYNAHL--AISDYYGADSVHAIELSIECFKEIDAVKTGVH 1689
Query: 738 ATIPSRLRVKI----YPDFMEKQD---KTWYESQHIVGNLYREVNGIA------PSTTTI 784
+P ++ + YP +M + D K +Y+S+ + G ++ ++ + P +
Sbjct: 1690 GEVPRNIQFHLNHFGYPHYMRRDDNSPKKYYQSKKVQGLMFDQLEQLVYIGDFLPEISVN 1749
Query: 785 KSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEML 841
+ K+G + ++ + Q EY NK+ +L+ YG + E +L
Sbjct: 1750 EKNLKDGYNDYLNS-------ASILYQ--------EYKNKINSLLQRYGGEDEESLL 1791
>gi|260793153|ref|XP_002591577.1| hypothetical protein BRAFLDRAFT_105111 [Branchiostoma floridae]
gi|229276785|gb|EEN47588.1| hypothetical protein BRAFLDRAFT_105111 [Branchiostoma floridae]
Length = 3516
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 156/585 (26%), Positives = 238/585 (40%), Gaps = 108/585 (18%)
Query: 339 VLSTLRNG--IVIGDKKFETLAF---SNSQERENTLWMFASRPELTAADIRERMGDFREI 393
V + LR+G + +G + F S SQ RE T ++ + G+F I
Sbjct: 108 VSAVLRSGFKVTVGKGQRRHYVFFGHSASQLRERTCILYDQGVLGPWERLVNGFGEFEAI 167
Query: 394 KNVTKYAARLGQSFASSREALHVDSNIGKISAELAE---TVAKKCGYAIY---------- 440
KN +K AAR+G +++ + L +D ++++ T CG+
Sbjct: 168 KNPSKRAARIGLLLSTATKCLELDEKEIDHTSDIERDGFTFTDGCGFISVACARKIMQDK 227
Query: 441 ------------TPSAFQIRYGGYK------------VTLRNNMFKYKSESTSLDILA-- 474
PS Q R G K V +R + K+K + +
Sbjct: 228 DISERYRHQDPPVPSVIQFRMKGCKGVVMTDPSLPNGVCIRPSQEKFKWKLPPPHVFGVC 287
Query: 475 -------------NSKYQREGVARLRLDNVFERKQREVVARLDAILTDSSKVQEALELMS 521
N +Y A D VF KQ LD + TD + A +
Sbjct: 288 DDGISQPYAFGQLNKQYIMMLSALGIKDEVFLSKQETYFKELDCLETDK---EVAFRHLC 344
Query: 522 SAENTNVLKELLNCGYKPDAEP------FLSMMPQTFHASNLLEL------RTRA-RIFI 568
+ + + L + PD E F S + + A+ L +L RA +I I
Sbjct: 345 ARGYIGLAERLFSREGGPDNETLEILRGFRSRVRRPPKANKLHKLLNTKPEPARALKIPI 404
Query: 569 QNGQAMMGCLDEKGTLEYGQGL----------------MVVAKKPCLHPGDMRVLRAVDV 612
+ + + G D GTLE GQ + V K PC HPGD RVL+ V+V
Sbjct: 405 EKSRNVFGVCDPSGTLEPGQCFFQATVRGKMQVFADTKVAVVKCPCYHPGDFRVLQCVNV 464
Query: 613 PALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKI 672
H+VDCV+FP +GERPH +E +GSD DG+ +FVCWD D +P + P +Y P E
Sbjct: 465 EDCRHLVDCVVFPVQGERPHADEIAGSDLDGDKFFVCWDPDLVPECEEAPLSY-PGGEAA 523
Query: 673 LARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFS 732
V+I D+ FA+Y +S + + +++ S+ C + KL S D +
Sbjct: 524 KKERVSIGDLISVFANY---NSRTVSRLNELFNRWADVKGVTSSECRKIAKLFSTAVDTA 580
Query: 733 KTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIV--GNLYREVNGIAPSTTTIKSFAKE 790
KTG IP RL PD EK+ Y Q ++ NLY + A S T++ F +
Sbjct: 581 KTGKGVDIPPRLLKP--PDAQEKR----YVWQKMLERANLYLADSVAADSDLTVRVFEEA 634
Query: 791 GAMQFYDT-DMEVNGFKEVAMQFDGFKYR-TEYDNKLGNLMDYYG 833
+ D+ V+ + Q F Y+ E + +L +L Y G
Sbjct: 635 DITDLLNNKDINVSEY-----QLFRFLYKWCESNGRLQDLQRYVG 674
>gi|14475571|emb|CAC41975.1| putative RNA dependent RNA polymerase [Dictyostelium discoideum]
Length = 1964
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 143/610 (23%), Positives = 252/610 (41%), Gaps = 136/610 (22%)
Query: 263 GGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSP 322
G + + +TPS+ F P + S R VR + NF+ + V+E L L
Sbjct: 760 GEFTMIRDVFITPSRTIFIQPTLQRSCRAVRKFGSS--NFIMVKIVNESLEPLQGV---- 813
Query: 323 QISSTNGERRTRIYE-RVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAA 381
+ ++E R+ L GI++G K + SNSQ RE + W +++
Sbjct: 814 -------NNKHPLHENRIKPILEGGILVGGKIYSYAGNSNSQLREYSSWFVSNQIGTHTV 866
Query: 382 DIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN------------------IGKI 423
I + NV K+ +G F+++ + + N G+I
Sbjct: 867 KI---WSGIEHVDNVRKFFRCIGLMFSTTIPTVTLPQNRIYRIQDITRNTHVFTEGCGEI 923
Query: 424 SAELAETVAKKCGYAIYTPSAFQIRYGGYK--------------VTLRNNMFKYK----- 464
ELA+ + + + T A+Q+R GG K + +R +M K+
Sbjct: 924 GPELAKHLNENYNFRPST-CAYQVRIGGNKGMLVVNNQAPDPSGIYIRPSMVKFNPIVCG 982
Query: 465 SESTSLDILANS-----KYQREGVARLRL----DNVFERKQREVVARLDAILTDSSKVQE 515
E +L+I + S K R+ ++ L DNVF Q + ++ I+ D++ ++
Sbjct: 983 DEHRTLEICSVSTTSRCKLNRQVISLLSTLGTQDNVFFALQDHYLNQVAQIVNDTNASKQ 1042
Query: 516 ALELMSSAENTNVLKELLNCGYKPD-------AEPFLSMMPQTFHASNLLELRTRARIFI 568
A+ + PD +P++ + + + + ++ + I I
Sbjct: 1043 AI-----------------VEFFPDITEGELYQDPYIRRILISLYKLKMERIQQKCHIEI 1085
Query: 569 QNGQAMMGCLDEKGTL-----------------------EYGQGLMVVAKKPCLHPGDMR 605
++ + ++G D +L + +GL++V K PC HPGD+R
Sbjct: 1086 KDSRMLLGVCDPTNSLPPNTVFVQLEEEDEDDDDGRKYEKVIEGLVMVIKNPCTHPGDVR 1145
Query: 606 VLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAY 665
L+AVD L H+ + ++F KG+ P+ E SGSD DG+ YF C+D I TAY
Sbjct: 1146 YLKAVDNLRLRHLRNVLVFSTKGDVPNFKEISGSDLDGDRYFFCYDKSLIGNRSKSETAY 1205
Query: 666 TPAPEKILARDVTIEDVEEYFA---DYIVN---DSLGIICNAHVVY-----AYSEPDKAM 714
E + D + FA Y N LG + N+H+ A E +
Sbjct: 1206 L-GDETVSNNDKKANVFNDPFALSSMYSTNVERQELGKMYNSHLAISDLFGANHEFSIQI 1264
Query: 715 SNRCPDLVKLSSIVGDFSKTGVAATIPSR----LRVKIYPDFMEKQDKT--WYESQHIVG 768
S C + D+ KTG+ TIP L+ K YP +M++++ T +Y+S+ I+G
Sbjct: 1265 SKECFKEI-------DYPKTGIHGTIPKEANVWLKTKGYPHYMQRENSTRVYYQSKTIMG 1317
Query: 769 NLYREVNGIA 778
+Y +++ +
Sbjct: 1318 KMYDQIDQLV 1327
>gi|170094614|ref|XP_001878528.1| RNA-directed RNA polymerase [Laccaria bicolor S238N-H82]
gi|164646982|gb|EDR11227.1| RNA-directed RNA polymerase [Laccaria bicolor S238N-H82]
Length = 1051
Score = 137 bits (345), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 153/666 (22%), Positives = 264/666 (39%), Gaps = 147/666 (22%)
Query: 252 QFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDED 311
+F A + LI + +TP+++ GP + SN +R Y DNF+R+ F DED
Sbjct: 198 KFKPRKARGFNASLISAAHVTITPTRMLLEGPLPTQSNNAIRKYKGCDDNFIRVDFRDED 257
Query: 312 LGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWM 371
S + + + + + ERV L+ GI+I + F+ LA+S S RE+ +W
Sbjct: 258 R--------SSYKRNQDVDDMSVLRERVGDVLKQGIMIAGRHFQFLAYSTSSLREHAVWF 309
Query: 372 FASRPE----LTAADIRERMGDFREI-KNVTKYAARLGQSFASSREALHVDSN------- 419
+S +T + +GDF + + +KYAAR+ Q F+++ ++H+ +
Sbjct: 310 MSSFESGGEMITPQKVVRDLGDFSALAQQPSKYAARIAQKFSATDPSVHIHGHEWERVDD 369
Query: 420 ----------------------------IGKIS----AELAETVAKKCGY---AIYTPSA 444
+G IS E+ ET+ G PSA
Sbjct: 370 IEYIEERTIRNDDGDIETRKTVHCFTDGVGTISESLGQEIFETLRNNEGRLEEKAPLPSA 429
Query: 445 FQIRY-----------------GGYKVTLRNNMFKYKS--ESTSLDILANSKYQREGVAR 485
+QIR+ G ++ LR +M K+ S +S L+I +Y +
Sbjct: 430 YQIRFMGSKGVVVVDKQLDKNSSGIRMRLRPSMIKFPSLAQSEPLEISEAFRYPKLCYLN 489
Query: 486 LRLDNVFERKQREVVARLD---AILTDSSKVQEALELMSSAENT------------NVLK 530
L E + LD A + ++ + ++LE S T ++LK
Sbjct: 490 RPLVMFLEDLGVRLQTFLDLQNAAIAEAQTIDDSLEQFRSIMETHRGGLGKSFDFPDILK 549
Query: 531 ELLNCGY---KPDAEP-----FLSMMPQTFHASNLLELRTRARIFIQNGQAMMG------ 576
+ G+ D P F+ + L E++ ARI I + ++G
Sbjct: 550 HFEDDGFDLHSQDGRPGIDNQFIKQLRNVARIEVLREIKHSARIKIPDSYLLVGVADEGP 609
Query: 577 --------------------CLDEKGTLE--YGQGLMVVAKKPCLHPGDMRVLRAVDVPA 614
C+ + G E + G +++ P HPGD++ +R + P
Sbjct: 610 AYRKDGYQNVYELPEGHIYACVQKAGDKEPTWLSGSCSISRSPVAHPGDVQRVRCIGKPP 669
Query: 615 ------LHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPA 668
H+V+ V+ P+ G+R + G D DG+IY V +P P +Y
Sbjct: 670 EDKLCLFSHLVNVVVLPSVGKRSLASCLGGGDLDGDIYSVIMLEPLLPTQMVVPASYDSL 729
Query: 669 PEKILARDVTIED-VEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSI 727
P + L +IE+ V ++ +YI +D LG++ N +V A + C L L S
Sbjct: 730 PPRALPPGQSIEEAVCDFIVEYIHSDVLGLLSNRLLVIADQSKEGVFDQDCEHLAVLCSQ 789
Query: 728 VGDFSKTG-----VAATIPSRLRVKIYPDFMEKQ-----DKTWYESQHIVGNLYR----E 773
D+ K G +P L ++ PD+ + +Y+S +G ++R E
Sbjct: 790 AVDYPKQGNPVDLSGGALPHPL-IRCKPDWQSAEINAPRQTDYYKSTRALGVMFRDHRLE 848
Query: 774 VNGIAP 779
V+G P
Sbjct: 849 VDGPLP 854
>gi|66802840|ref|XP_635263.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
gi|60463423|gb|EAL61608.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
Length = 2403
Score = 137 bits (345), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 143/610 (23%), Positives = 252/610 (41%), Gaps = 136/610 (22%)
Query: 263 GGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSP 322
G + + +TPS+ F P + S R VR + NF+ + V+E L L
Sbjct: 1203 GEFTMIRDVFITPSRTIFIQPTLQRSCRAVRKFGSS--NFIMVKIVNESLEPLQGV---- 1256
Query: 323 QISSTNGERRTRIYE-RVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAA 381
+ ++E R+ L GI++G K + SNSQ RE + W +++
Sbjct: 1257 -------NNKHPLHENRIKPILEGGILVGGKIYSYAGNSNSQLREYSSWFVSNQIGTHTV 1309
Query: 382 DIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN------------------IGKI 423
I + NV K+ +G F+++ + + N G+I
Sbjct: 1310 KI---WSGIEHVDNVRKFFRCIGLMFSTTIPTVTLPQNRIYRIQDITRNTHVFTEGCGEI 1366
Query: 424 SAELAETVAKKCGYAIYTPSAFQIRYGGYK--------------VTLRNNMFKYK----- 464
ELA+ + + + T A+Q+R GG K + +R +M K+
Sbjct: 1367 GPELAKHLNENYNFRPST-CAYQVRIGGNKGMLVVNNQAPDPSGIYIRPSMVKFNPIVCG 1425
Query: 465 SESTSLDILANS-----KYQREGVARLRL----DNVFERKQREVVARLDAILTDSSKVQE 515
E +L+I + S K R+ ++ L DNVF Q + ++ I+ D++ ++
Sbjct: 1426 DEHRTLEICSVSTTSRCKLNRQVISLLSTLGTQDNVFFALQDHYLNQVAQIVNDTNASKQ 1485
Query: 516 ALELMSSAENTNVLKELLNCGYKPD-------AEPFLSMMPQTFHASNLLELRTRARIFI 568
A+ + PD +P++ + + + + ++ + I I
Sbjct: 1486 AI-----------------VEFFPDITEGELYQDPYIRRILISLYKLKMERIQQKCHIEI 1528
Query: 569 QNGQAMMGCLDEKGTL-----------------------EYGQGLMVVAKKPCLHPGDMR 605
++ + ++G D +L + +GL++V K PC HPGD+R
Sbjct: 1529 KDSRMLLGVCDPTNSLPPNTVFVQLEEEDEDDDDGRKYEKVIEGLVMVIKNPCTHPGDVR 1588
Query: 606 VLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAY 665
L+AVD L H+ + ++F KG+ P+ E SGSD DG+ YF C+D I TAY
Sbjct: 1589 YLKAVDNLRLRHLRNVLVFSTKGDVPNFKEISGSDLDGDRYFFCYDKSLIGNRSKSETAY 1648
Query: 666 TPAPEKILARDVTIEDVEEYFA---DYIVN---DSLGIICNAHVVY-----AYSEPDKAM 714
E + D + FA Y N LG + N+H+ A E +
Sbjct: 1649 L-GDETVSNNDKKANVFNDPFALSSMYSTNVERQELGKMYNSHLAISDLFGANHEFSIQI 1707
Query: 715 SNRCPDLVKLSSIVGDFSKTGVAATIPSR----LRVKIYPDFMEKQDKT--WYESQHIVG 768
S C + D+ KTG+ TIP L+ K YP +M++++ T +Y+S+ I+G
Sbjct: 1708 SKECFKEI-------DYPKTGIHGTIPKEANVWLKTKGYPHYMQRENSTRVYYQSKTIMG 1760
Query: 769 NLYREVNGIA 778
+Y +++ +
Sbjct: 1761 KMYDQIDQLV 1770
>gi|353236430|emb|CCA68425.1| related to NAM7-nonsense-mediated mRNA decay protein (RdRP)
[Piriformospora indica DSM 11827]
Length = 678
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 150/550 (27%), Positives = 236/550 (42%), Gaps = 110/550 (20%)
Query: 271 ILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGE 330
I TP K+ E NR++++ D+ FL SF G L ++P+++
Sbjct: 43 ISFTPEKIILSLNEFP-KNRILQT--DDQHLFLLASF-----GSLRFPDVAPKVN----- 89
Query: 331 RRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRER---M 387
+ + L +G+ + KK+ SNSQ R ++ ++ R E ADI R +
Sbjct: 90 -----IDYIARCLTSGVTLNGKKYFFYGHSNSQLRSHSCFLRQGRSE---ADIHSRILSL 141
Query: 388 GDFREIKNVTKYAARLGQSFASSREALHVDSN------------------IGKISAELAE 429
GDF+ I + K A R+G F+++ + +D + G IS A
Sbjct: 142 GDFKSIDSPAKLAKRIGLLFSAAEQDSVLDPSHTRDIPDLMVGDTLFSDGCGLISQAYAR 201
Query: 430 TVAKKCGYAI-----YTPSAFQIRYGGYK----------------VTLRNNMFKYKS-ES 467
+AKK AI Y PS FQIRY GYK V R +M K+ +
Sbjct: 202 LLAKK-KQAIFRQVKYVPSVFQIRYKGYKGVLMLHPPLDSQNDGYVHFRKSMRKFTGVPN 260
Query: 468 TSLDILANS------KYQREGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEAL 517
+L I+ S + E VA L D V K R ++ L + T+ S AL
Sbjct: 261 DTLSIIKYSVPYTYGRLNNEIVALLSSLGISDEVLLGKLRAYMSWLRTVCTNLS---SAL 317
Query: 518 ELMSSAENTNVLKELL-----NCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQ 572
+ +SS + ++++ +L + G + + + L + F ++ + + R+ + N +
Sbjct: 318 DFVSSIDKHSLVERILLEGIDSAGIQRELKKALKQEIEKFKKVDIE--KKKLRVLVNNSR 375
Query: 573 AMMGCLDEKGTLEYGQGLM-----------------VVAKKPCLHPGDMRVLRAVDVPAL 615
+ G D L G+ + ++ + PC+HPGD LRAVD P L
Sbjct: 376 RLFGVCDPFQILREGEVFVRVTMPHAGPRTIHSCSVLIFRNPCMHPGDCLKLRAVDKPEL 435
Query: 616 HHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILAR 675
H+VDCV+F +KG + SG D D Y + WD D IP F+ Y P EK +
Sbjct: 436 RHLVDCVVFASKGRHAAPSLSSGGDLDE--YTIIWDKDLIPSRVFEHYLYPPVKEKKKSV 493
Query: 676 DVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTG 735
+T D+ +FA+Y + S+G + + P+ A S C DL L S D G
Sbjct: 494 -ITRRDLAAHFANY-NSISMGTTARLYWQWVRFHPEGAKSQECQDLNALYSQCVD----G 547
Query: 736 VAATIPSRLR 745
+ IP RLR
Sbjct: 548 GSIKIPERLR 557
>gi|281207108|gb|EFA81291.1| RNA-directed RNA polymerase [Polysphondylium pallidum PN500]
Length = 2852
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 173/670 (25%), Positives = 274/670 (40%), Gaps = 133/670 (19%)
Query: 273 VTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERR 332
+TP++V P I L NR +R +P E F+ + F +EDL QI +
Sbjct: 1325 ITPTRVILNLPRIQLGNRCIRQFPSE--RFMSVQFTEEDL----------QIRIEYQDFL 1372
Query: 333 TRIYERVLSTLRNGIVIGDK-KFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFR 391
Y +L NGI + + F L S+SQ R W + + R+ + R
Sbjct: 1373 LPFYSHIL---LNGINVPEMGTFYFLGSSSSQVRNYQSWFYCVE---EGVNKESRLKEIR 1426
Query: 392 EI---KNVTKYAAR-----LGQSFASSREALHV---------------DSNI----GKIS 424
E K + ++AR + F S+ + + D N G +
Sbjct: 1427 EAMIGKTDSSWSARKALRAMSLVFPSTIPTIRIPPHEYHEGLDDIVRNDHNFTEGCGYVG 1486
Query: 425 AELAETVAKKCGYAIYTPSAFQIRYGGYK------------VTLRNNMFKYKSE-----S 467
E A +A + T SA+QIR GG K + LR +M K+ + +
Sbjct: 1487 IETAREIAIAGNFPQDT-SAYQIRIGGNKGVVSVHHSIRRGIYLRKSMRKFNTTDEHAYN 1545
Query: 468 TSLDILANS-----KYQREGVARLR----LDNVFERKQREVVARLDAILTDSSKVQEALE 518
+L++++ S R+ + L LD F Q+ + +L I D S + +
Sbjct: 1546 RTLEVISVSSKKACNLNRQIINLLVGLGVLDGFFLSLQQAALDKLAHIFNDESVRRHIMH 1605
Query: 519 LMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCL 578
+SS + EL +P + Q + L +++ + I I + + ++G
Sbjct: 1606 ELSSIDEA--FDELDLAA----NDPLICSSLQLCYLKKLDQIKDKCMIEIDSARTVLGVS 1659
Query: 579 DEKGTL-------------EYGQ-------GLMVVAKKPCLHPGDMRVLRAVDVPALHH- 617
DE G L E G G + V K PCLHPGD+RVL AVDVP L +
Sbjct: 1660 DESGILGPDEVFLQISIDEEDGHISRKVITGQVFVCKNPCLHPGDIRVLTAVDVPELRNC 1719
Query: 618 MVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRI------PPLQFQPTAYTPAPEK 671
VD + F GE P+ +CSGSD DG+ YFV +D + PP +A T
Sbjct: 1720 YVDVIAFSQNGEVPNFKQCSGSDLDGDRYFVGFDQTMVKFITPEPPFLGDESANTKVEP- 1778
Query: 672 ILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSS---IV 728
D + + + + + I SLG I +H+ DK S P ++L+ I
Sbjct: 1779 --PYDGSHKQLVKQYITNITRGSLGKIALSHLAIC----DK-FSPTHPLAIELAIQHFIE 1831
Query: 729 GDFSKTGVAATIPSRLR-----VKIYPDFMEKQ--DKTWYESQHIVGNLYREVNGIAPST 781
D KTGV +P ++ K+YP+FME K ++ S I+G LY+ +
Sbjct: 1832 VDAFKTGVNGKVPDIVKKHLNYFKLYPNFMESSMPKKNYWVSHKILGKLYQ-------IS 1884
Query: 782 TTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEML 841
+K+ + F D + V+G++E D K T Y + +L+ Y I E +++
Sbjct: 1885 VPLKAIPRYIPDTFVDEGLLVDGYQEYLA--DAKKTYTRYKFAINSLLTRYDIDREEDII 1942
Query: 842 SRCIMEMAKS 851
I E S
Sbjct: 1943 IEFIKETINS 1952
>gi|113205255|gb|ABI34312.1| RNA-directed RNA polymerase, putative [Solanum demissum]
Length = 241
Score = 136 bits (342), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 102/166 (61%), Gaps = 6/166 (3%)
Query: 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKG-SRAHAIVEFTTVEAADF 59
M K I +YGF L + VK FLE+HTG GTV ++V Q+KG SRA A V+F +AD
Sbjct: 66 MGKTIQVYGFPDLLPAEVVKSFLEKHTGYGTVCALDVKQSKGGSRAFAKVQFVDNISADK 125
Query: 60 IKCLARERLSYGNSFLKASSAKRRTPHFAKRTPHYKLGGDLKLNFGCQISKDKFSVFWSQ 119
I LA +RL +G+S+LKA K A H + LNFGCQIS DKF+V S
Sbjct: 126 IINLASKRLYFGSSYLKAWEMKTDIVQVA-YVDHMD---GITLNFGCQISDDKFAVLGST 181
Query: 120 ENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSGHS 165
E VS+K L+K FFLS S DYKL+LS E+IWQ+ LHRP G +
Sbjct: 182 E-VSIKFGIGLKKIYFFLSRGSADYKLQLSYENIWQVVLHRPYGQN 226
>gi|389741441|gb|EIM82629.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1527
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 130/489 (26%), Positives = 198/489 (40%), Gaps = 87/489 (17%)
Query: 340 LSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKY 399
L + G+ + ++ SNSQ R ++ + + + GDF +I NV K
Sbjct: 41 LRFFQAGLFLNGVQYRFYGHSNSQLRSGGCFLRRANSDEELDQVVYAKGDFGKIMNVAKR 100
Query: 400 AARLGQSFASSREALHVDSN------------------IGKISAELAETVAKKCGYA--- 438
A R+G F+ + +D G IS L+ ++KK G
Sbjct: 101 AKRIGLLFSGAEVDYMLDPQYTGDIDDLKIGDEVFSDGCGLISRWLSVQISKKKGIVHNR 160
Query: 439 -IYTPSAFQIRYGGYKVTLRNNMFKYKSESTSLDILANSKYQREGVARLRL--------- 488
YTP FQIRY GYK M ++ + K Q++ A +
Sbjct: 161 RRYTPCVFQIRYRGYKGV---QMLHPPLDAAKIHQAEFRKSQKKFTATDDMIFSIVDYSK 217
Query: 489 DNVFERKQREVVARL------------------DAILTDSSKVQEALELMSSAENTNVLK 530
+ F R E+ L D + SS A EL S+ ++ +
Sbjct: 218 PHTFGRLNNEITILLSSLGVTNDDFVALQQEYFDWVQRASSDPVHAFELFSTLGKHDIAE 277
Query: 531 ELLNCGYKPDAEPFLSMMP-------QTFHASNLLELRTRARIFIQNGQAMMGCLDEKGT 583
+L G D+ + + Q FH + R R+ I+ + + G D G
Sbjct: 278 RVLLDGL--DSPTIVKQIRSAQAAEIQAFHKEGD-ATKERVRMLIRKSRRLFGVCDPFGV 334
Query: 584 LEYGQGLM-----------------VVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPA 626
L+ GQ + +V + PCLHPGD+ LRAVD P L H+VDCV+FP+
Sbjct: 335 LKEGQVHVRITVSRAGASTINHLDVIVVRNPCLHPGDILKLRAVDHPQLSHLVDCVVFPS 394
Query: 627 KGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYF 686
G+R + SG D DG+ YFVCWD R+ P + + P ++ +T +D+ +F
Sbjct: 395 VGKRAAPSMSSGGDLDGDEYFVCWD-PRLVPKKISESYTYPPNKEFTQNKITRQDLARHF 453
Query: 687 ADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLR- 745
A Y N + H +A PD A+S C +L L S D G +IP+RL
Sbjct: 454 ASY-NNSGMAKAAKYHNKWARYPPDGALSKECQELNALYSQAVD----GARVSIPARLTE 508
Query: 746 -VKIYPDFM 753
+ PDF+
Sbjct: 509 VPESRPDFI 517
>gi|113205315|gb|ABI34338.1| RNA-directed RNA polymerase-like, putative [Solanum demissum]
Length = 215
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 102/166 (61%), Gaps = 6/166 (3%)
Query: 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKG-SRAHAIVEFTTVEAADF 59
M K I +YGF L + VK FLE+HTG GTV ++V Q+KG SRA A V+F +AD
Sbjct: 27 MGKTIQVYGFPDLLPAEVVKSFLEKHTGYGTVCALDVKQSKGGSRAFAKVQFVDNISADK 86
Query: 60 IKCLARERLSYGNSFLKASSAKRRTPHFAKRTPHYKLGGDLKLNFGCQISKDKFSVFWSQ 119
I LA +RL +G+S+LKA K A H + LNFGCQIS DKF+V S
Sbjct: 87 IINLASKRLYFGSSYLKAWEMKTDIVQVA-YVDHMD---GITLNFGCQISDDKFAVLGST 142
Query: 120 ENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSGHS 165
E VS+K L+K FFLS S DYKL+LS E+IWQ+ LHRP G +
Sbjct: 143 E-VSIKFGIGLKKIYFFLSRGSADYKLQLSYENIWQVVLHRPYGQN 187
>gi|392595557|gb|EIW84880.1| RdRP-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 1235
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 152/643 (23%), Positives = 269/643 (41%), Gaps = 152/643 (23%)
Query: 264 GLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQ 323
G + + +TP+++ GP I+ SNRV+R Y D+FLR+ F DED +
Sbjct: 403 GRFFCYHVTITPTRMLLEGPYITQSNRVIRKYEGFEDHFLRVEFRDEDRLQFRWD----- 457
Query: 324 ISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADI 383
+G+ + + +RV L+NGI I + F LA+S+S R +++W ++A +I
Sbjct: 458 -REVDGQ--SFLEDRVGGMLKNGIDIAGRHFTFLAYSSSALRSHSVWFVNEEDFMSATNI 514
Query: 384 RERMGDFRE-IKNVTKYAARLG-----------------QSFASSREALHVDSN------ 419
R+ +G F E I +KYAAR+G Q+F+++ ++ + +
Sbjct: 515 RDSLGVFAETIYQPSKYAARIGVSNGFLRFDLHMFNLPQQAFSATDPSVKISKDQWKEIR 574
Query: 420 -------------IGKISAELAETVAKKC-------GYAIYTPSAFQIRYGGYKVTL--- 456
+G IS EL V +K G PSA+QIR+ G+K +
Sbjct: 575 DIKNAQGQLFTDGVGTISRELGRMVWEKLCEARRDRGANSVIPSAYQIRFLGFKGVVAID 634
Query: 457 ----------RNNMFKYKSESTSLDILANSKYQR----------------EGV------- 483
R +M K+ ++ +I + + GV
Sbjct: 635 EQLEGIMLCPRTSMRKFADQTEHAEIEIVRAFDKPNQPNLNRPLVMVLEDSGVDKGAFME 694
Query: 484 --------ARLRLDNV-------------FERKQREVVARLDAILTD--SSKVQEALELM 520
AR+ D+V F + ++ +LDA+ D S+ QE+L+
Sbjct: 695 LLDDAVAGARMAHDSVEKFVNVLRSNRLGFSYRLAHILLKLDALGLDLKSNSNQESLDTA 754
Query: 521 SSAEN-----TNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQ--- 572
A +VL+++ + P +PQ++ L+ + ++++G
Sbjct: 755 FLARVRGCVINHVLRDIKHFARIP--------IPQSYQ---LVGVADEGPAYVKDGHENV 803
Query: 573 ------AMMGCLDEKGT-LEYGQGLMVVAKKPCLHPGDMRVLRAVDVPA------LHHMV 619
+ C+ G ++ +G V+++ P +HPGD++ + AV P H+
Sbjct: 804 YTLPPGKIFACIQNFGEEPKWLEGPCVISRSPVVHPGDVQRVYAVGKPPANQLCLFEHLR 863
Query: 620 DCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTI 679
+ V+ P++G RP N G D DG++Y + + P Y + L R TI
Sbjct: 864 NVVVLPSQGPRPLANCLGGGDLDGDLYEIIMFQRLLITEHSDPAQYEDRKPRTLDRPSTI 923
Query: 680 EDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAAT 739
+DV ++ +YI +D +G+I + H++ A D + C L L S D+ K G
Sbjct: 924 DDVCDFVVEYIHSDVVGLISDKHIIIADQSKDGTRDDLCLKLADLHSQAVDYPKNGNPVD 983
Query: 740 I---PSRLRVKIYPDFMEKQDKT-----WYESQHIVGNLYREV 774
I P L + PD+ + + +YES +G++YR V
Sbjct: 984 IRRLPRNL-IPYKPDWHAAEVSSPRSLDYYESDRALGHMYRSV 1025
>gi|409080807|gb|EKM81167.1| hypothetical protein AGABI1DRAFT_56570 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1201
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 157/619 (25%), Positives = 271/619 (43%), Gaps = 137/619 (22%)
Query: 270 KILVTPSKVYFCGPEISLSNRVVRSYPD-EIDNFLRLSFVDEDLGKLYSTVLSPQISSTN 328
++ ++P+ ++ GP I SNRV+R Y +NFLR+ F DE+ + S I
Sbjct: 400 QVTISPTSIFLNGPFIDKSNRVLRRYSKANHENFLRVEFRDENNLQYRS---DKDIDDEE 456
Query: 329 GERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE-----LTAADI 383
RR R+ + G+VI ++F LA+S S RE+++W + + + A I
Sbjct: 457 FVRR-----RLGHFMHEGLVIAGRRFRFLAYSQSALREHSVWFVKAFRDPKHGIVNAGKI 511
Query: 384 RERMGDFREIKN-------VTKYAARLGQSFASSREAL-HVDSNI--------------- 420
E +G+FR++ ++ AR+ Q+F+++ A+ VD +
Sbjct: 512 IESLGNFRDLAYDRTLGYCPARFGARVSQAFSATDAAIVEVDEILIKRDITTPDGQYTFT 571
Query: 421 ---GKISAELA----ETVAKKCGYAIYTPSAFQIRYGGYK--------------VTLRNN 459
G +SA+LA +A+K + P A+QIR+ G K ++LR++
Sbjct: 572 DGSGDMSADLARDIWHRIARKRDRNDF-PRAYQIRHEGSKGMISVDYRLNGSNTLSLRDS 630
Query: 460 MFKYKS-ESTSLD----ILANSKYQREGVARLRLDN------VFERKQREVVARLDAILT 508
M K+ + ES ++ I + Y + L+ VF+ Q E V
Sbjct: 631 MIKFDAPESNEIEVSRAIDQPTPYYLNRFLIMILEGLGVKHEVFQGFQDEAV-------- 682
Query: 509 DSSKVQEALELMSSAEN-----------------TNVLK-ELLNCGYKPDAEPFLSMMPQ 550
Q+A+E +SSA + N+ K +L N P + L +
Sbjct: 683 --RGTQQAMEHLSSASHLLQAHGLGLTFKIPSTMANLSKLDLDNLARDPLFDQPLRL--G 738
Query: 551 TFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLE----------------YGQGLMVVA 594
+H L +L+ +ARI I N ++G D G L+ Y +G ++++
Sbjct: 739 VYHV--LRDLKYKARIPIPNAWTLVGVADTHGYLKADEVFVCIKHPEKGSFYLEGPVLIS 796
Query: 595 KKPCLHPGDMRVLRAVDVP------ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFV 648
+ P +HPGD+++ A+ P A + + V+F KG+RP + G D DG+ Y +
Sbjct: 797 RSPTIHPGDVQLAMAIGGPRQGSPFAREPLPNTVVFSVKGDRPLPSCLGGGDLDGDPYNI 856
Query: 649 C--WDHDRIPPLQ-FQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVY 705
DH P + ++P Y A +++ T++DV ++ YIV+D +G++ ++
Sbjct: 857 IPLRDHPYFTPEKTYEPANYEAAEKQLTEWPCTMKDVADFVMQYIVSDVIGVVATNWLII 916
Query: 706 AYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAAT---IPSRLRVK---IYPDFMEK---Q 756
A D + C L KL S D+ KTG IP K + P+ +E Q
Sbjct: 917 ADQRQD-ITDDDCLVLAKLHSDAVDYPKTGRPVQQDHIPRPRNPKPDWLAPETLENVLSQ 975
Query: 757 DKTWYESQHIVGNLYREVN 775
+YESQ +G L R ++
Sbjct: 976 GGRYYESQTALGKLTRAID 994
>gi|392587026|gb|EIW76361.1| RdRP-domain-containing protein, partial [Coniophora puteana
RWD-64-598 SS2]
Length = 935
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 154/665 (23%), Positives = 265/665 (39%), Gaps = 157/665 (23%)
Query: 236 PVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSY 295
P+ L E S+ T PA G + + + +TP+++ GP I+ SNRV+R Y
Sbjct: 116 PLELLDELVNYRASNQPRRTPPA-----GHFFCSHVTITPTRMLLEGPYITQSNRVIRKY 170
Query: 296 PDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYE----RVLSTLRNGIVIGD 351
D+F+R+ F +E+ K ER + E RV + L+ G+ +
Sbjct: 171 DQFKDHFIRVEFREENRQKY------------RWEREVDVLEFLTSRVGAKLKGGVDVAG 218
Query: 352 KKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKN-VTKYAARLG------ 404
++F +A+S S R ++LW I + +G+F N K AAR+G
Sbjct: 219 RRFSFVAYSPSALRNHSLWFVCEEGFRPPVQILKELGNFSATTNQPAKRAARMGVSTNAC 278
Query: 405 -----------QSFASSREALHVDSN-------------------------IGKISAELA 428
Q+F++++ ++ V + IG IS +L
Sbjct: 279 YVPQCTKASFQQAFSATQPSIKVSKDQIVEIPDITGPHNNPARPPHVFTDGIGTISPKLR 338
Query: 429 ETVAKKCGYAIYTPSAFQIRYGGYK-------------VTLRNNMFKY----KSESTSLD 471
+ + + + P AFQ+R G K + R +M K+ +SE ++
Sbjct: 339 DRICEALSIST-KPDAFQVRCAGLKGVFVVDHQLEGKIMCPRPSMKKFLPLDESEDAEIE 397
Query: 472 I-------------------LANSKYQREGVARLRLDNVFE-RKQREVVARLDAILTDSS 511
I L + + EG L D V + R + V + A+L
Sbjct: 398 IVRAFDKPGRSFLNRPLVMVLEDRGVKTEGFLELFNDAVADARTAHDSVDQFVAVL-QKH 456
Query: 512 KVQEALELMSSAENTNVLKELLNCGYKPDA--EPFLSMMPQTFHASNLLELRTRARIFIQ 569
++ L + L +L G ++ FL+ + L ++R ARI I
Sbjct: 457 RLGIPYRLDQTLLKLKALGLVLRTGQDQESLDTDFLARVRLCVIKHILRDIRHSARIPIP 516
Query: 570 NGQAMMGCLDEKG-----------TLEYGQ-----------------GLMVVAKKPCLHP 601
++G DE TL GQ G V+++ P +HP
Sbjct: 517 GSYQLVGVADEGQAYINAGKENVFTLRQGQIYACIQDPSDAEPQWLQGTCVISRSPVVHP 576
Query: 602 GDMRVLRAVDVP------ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRI 655
GD++ + A+ P A + + V+F ++G P N C G D F+
Sbjct: 577 GDVQRVYAIGKPPENQLCAFARLKNVVVFASRGTLPLAN-CLGGDGHVTRLFITE----- 630
Query: 656 PPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMS 715
Q PT Y L R VT++D+ ++ +YI +D +G++ + H++ A + D +
Sbjct: 631 ---QVDPTEYDAREPYTLDRPVTLDDICDFVVEYIHSDVVGLVADTHIIIADASSDGTLD 687
Query: 716 NRCPDLVKLSSIVGDFSKTGVAATI---PSRLRVKIYPDFMEKQDKT-----WYESQHIV 767
RC +L K+ S D+ K G+ I P RL + PD+ E +D++ +Y S +
Sbjct: 688 RRCLELAKMHSQAVDYLKNGIPVDIRRMPRRL-IPFKPDWHEAEDESSHPCDYYRSNRAL 746
Query: 768 GNLYR 772
G++YR
Sbjct: 747 GHMYR 751
>gi|113205404|gb|ABI34379.1| RNA-directed RNA polymerase-like, putative [Solanum tuberosum]
Length = 274
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 102/166 (61%), Gaps = 6/166 (3%)
Query: 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKG-SRAHAIVEFTTVEAADF 59
M K I +YGF L + VK FLE+HTG GTV ++V Q+KG SRA A V+F +AD
Sbjct: 86 MGKTIQVYGFPDLLPAEVVKSFLEKHTGYGTVCALDVKQSKGGSRAFAKVQFVDNISADK 145
Query: 60 IKCLARERLSYGNSFLKASSAKRRTPHFAKRTPHYKLGGDLKLNFGCQISKDKFSVFWSQ 119
I LA +RL +G+S+LKA K A H + LNFGCQIS DKF+V S
Sbjct: 146 IINLASKRLYFGSSYLKAWEMKTDIVQVA-YVDHMD---GITLNFGCQISDDKFAVLGST 201
Query: 120 ENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSGHS 165
E VS+K L+K FFLS S DYKL+LS E+IWQ+ LHRP G +
Sbjct: 202 E-VSIKFGIGLKKIYFFLSRGSADYKLQLSYENIWQVVLHRPYGQN 246
>gi|426197722|gb|EKV47649.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
Length = 1202
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 158/627 (25%), Positives = 273/627 (43%), Gaps = 137/627 (21%)
Query: 262 DGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPD-EIDNFLRLSFVDEDLGKLYSTVL 320
D + ++ ++P+ ++ GP I SNRV+R Y +NFLR+ F DE+ + S
Sbjct: 394 DASYYHSLQVTISPTSIFLNGPFIDKSNRVLRRYSKANHENFLRVEFRDENNLQYRS--- 450
Query: 321 SPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE--- 377
I RR R+ + G+VI ++F LA+S S RE+++W + +
Sbjct: 451 DKDIDDEEFVRR-----RLGHFMHEGLVIAGRRFRFLAYSQSALREHSVWFVKAFRDPKH 505
Query: 378 --LTAADIRERMGDFREIKN-------VTKYAARLGQSFASSREAL-HVDSNI------- 420
+ A I E +G+FR++ ++ AR+ Q+F+++ A+ VD +
Sbjct: 506 GIVNAGKIIESLGNFRDLAYDRTLGYCPARFGARVSQAFSATDAAIVEVDEILIKRDITT 565
Query: 421 -----------GKISAELA----ETVAKKCGYAIYTPSAFQIRYGGYK------------ 453
G +SA+LA +A+K + P A+QIR+ G K
Sbjct: 566 PDGQYTFTDGSGDMSADLARDIWHRIARKRDRNDF-PRAYQIRHEGSKGMISVDYRLNGS 624
Query: 454 --VTLRNNMFKYKS-ESTSLD----ILANSKYQREGVARLRLDN------VFERKQREVV 500
++LR++M K+ + ES ++ I + Y + L+ VF+ Q E V
Sbjct: 625 NTLSLRDSMIKFDAPESNEIEVSRAIDQPTPYYLNRFLIMILEGLGVKHEVFQGFQDEAV 684
Query: 501 ARLDAILTDSSKVQEALELMSSAEN-----------------TNVLK-ELLNCGYKPDAE 542
Q+A+E +SSA + N+ K +L N P +
Sbjct: 685 ----------RGTQQAMEHLSSASHLLQAHGLGLTFKIPSTMANLSKLDLDNLVRDPLFD 734
Query: 543 PFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLE----------------Y 586
L + +H L +L+ +ARI I N ++G D G L+ Y
Sbjct: 735 QPLRL--GVYHV--LRDLKYKARIPIPNAWTLVGVADTHGYLKADEVFVCIKHPEKGSFY 790
Query: 587 GQGLMVVAKKPCLHPGDMRVLRAVDVP------ALHHMVDCVLFPAKGERPHTNECSGSD 640
+G +++++ P +HPGD+++ A+ P A + + V+F KG+RP + G D
Sbjct: 791 LEGPVLISRSPTIHPGDVQLAMAIGGPRQGSPFAREPLPNTVVFSVKGDRPLPSCLGGGD 850
Query: 641 QDGEIYFVC--WDHDRIPPLQ-FQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGI 697
DG+ Y + DH P + ++P Y A +++ T++DV ++ YIV+D +G+
Sbjct: 851 LDGDPYNIIPLRDHPYFTPEKTYEPANYEAAEKQLTEWPCTMKDVADFVMQYIVSDVIGV 910
Query: 698 ICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAAT---IPSRLRVK---IYPD 751
+ ++ A D + C L KL S D+ KTG IP K + P+
Sbjct: 911 VATNWLIIADQRKD-ITDDDCLVLAKLHSDAVDYPKTGRPVQQDHIPRPRNPKPDWLAPE 969
Query: 752 FMEK---QDKTWYESQHIVGNLYREVN 775
+E Q +YESQ +G L R ++
Sbjct: 970 TLENVLSQGGRYYESQTALGKLTRAID 996
>gi|66804721|ref|XP_636093.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
gi|60464394|gb|EAL62541.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
Length = 2417
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 139/606 (22%), Positives = 253/606 (41%), Gaps = 127/606 (20%)
Query: 263 GGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSP 322
G + + +TPS+ F P + S R VR + NF+ + V+E L L
Sbjct: 1188 GEFTMIRDVFITPSRTIFIQPTLQRSCRAVRKFGSS--NFIVVKIVNESLEPLQGV---- 1241
Query: 323 QISSTNGERRTRIYE-RVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAA 381
+ ++E R+ L GI++G + + SNSQ RE + W +++
Sbjct: 1242 -------NNKHPLHENRIKPILEGGILVGGEIYSYAGNSNSQLREYSSWFVSNQIGTHTV 1294
Query: 382 DIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN------------------IGKI 423
I + NV K+ +G F+++ + + N G+I
Sbjct: 1295 KI---WSGIEHVDNVRKFFRCIGLMFSTTIPTVTLPQNRIYRIQDITRNTHEFTEGCGEI 1351
Query: 424 SAELAETVAKKCGYAIYTPSAFQIRYGGYK--------------VTLRNNMFKYK----- 464
ELA+ + + + T A+Q+R GG K + +R +M K+
Sbjct: 1352 GPELAKHLNENYNFRPST-CAYQVRIGGNKGVLVVNNQAPDPSGIYIRPSMVKFNPIDCG 1410
Query: 465 SESTSLDILANS-----KYQREGVARLRL----DNVFERKQREVVARLDAILTDSSKVQE 515
E +L+I + S K R+ ++ L DNVF Q + ++ I+ D++ ++
Sbjct: 1411 DEHRTLEICSVSTTSRCKLNRQVISLLSTLGTQDNVFFALQDHYLNQVAQIVNDTNASKQ 1470
Query: 516 ALELMSSAENTNVLKELLNCGYKPD-------AEPFLSMMPQTFHASNLLELRTRARIFI 568
A+ + PD +P++ + + + + ++ + I I
Sbjct: 1471 AI-----------------VEFFPDITEGELYQDPYIRRILISLYKLKMERIQQKCHIEI 1513
Query: 569 QNGQAMMGCLDEKGTL------------------------EYGQGLMVVAKKPCLHPGDM 604
++ + ++G D +L + +GL++V K PC HPGD+
Sbjct: 1514 KDSRMLLGVCDPTNSLPPNTVFVQLEEEDEDDDDDGRKYEKVIEGLVMVIKNPCTHPGDV 1573
Query: 605 RVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTA 664
R L+AVD L H+ + ++F KG+ P+ E SGSD DG+ YF C+D I TA
Sbjct: 1574 RYLKAVDNIRLRHLRNVLVFSTKGDVPNFKEISGSDLDGDRYFFCYDKSLIGNRSESETA 1633
Query: 665 YTPAPEKILARDVTIEDVEEYFA---DYIVN---DSLGIICNAHVVYAYSEPDKAMSNRC 718
Y E + D + FA Y N LG + ++H+ A S+ A
Sbjct: 1634 YL-VVETVSNNDKKANVFNDPFALSSMYSTNAERQELGKLYHSHL--AISDQYGANHKYS 1690
Query: 719 PDLVKLSSIVGDFSKTGVAATIPSRLRVKI----YPDFMEKQDKT--WYESQHIVGNLYR 772
+ K D+ KTG+ TIP + +++ YP +M++++ T +Y+S+ I+G +Y
Sbjct: 1691 IQISKECFKEIDYPKTGIHGTIPKEVNIRLQTVGYPHYMQRENSTRVYYQSKKIMGKMYD 1750
Query: 773 EVNGIA 778
+++ +
Sbjct: 1751 QIDQLV 1756
>gi|14475569|emb|CAC41974.1| putative RNA dependent RNA polymerase [Dictyostelium discoideum]
Length = 1883
Score = 132 bits (333), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 139/606 (22%), Positives = 253/606 (41%), Gaps = 127/606 (20%)
Query: 263 GGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSP 322
G + + +TPS+ F P + S R VR + NF+ + V+E L L
Sbjct: 935 GEFTMIRDVFITPSRTIFIQPTLQRSCRAVRKFGSS--NFIVVKIVNESLEPLQGV---- 988
Query: 323 QISSTNGERRTRIYE-RVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAA 381
+ ++E R+ L GI++G + + SNSQ RE + W +++
Sbjct: 989 -------NNKHPLHENRIKPILEGGILVGGEIYSYAGNSNSQLREYSSWFVSNQIGTHTV 1041
Query: 382 DIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN------------------IGKI 423
I + NV K+ +G F+++ + + N G+I
Sbjct: 1042 KI---WSGIEHVDNVRKFFRCIGLMFSTTIPTVTLPQNRIYRIQDITRNTHEFTEGCGEI 1098
Query: 424 SAELAETVAKKCGYAIYTPSAFQIRYGGYK--------------VTLRNNMFKYK----- 464
ELA+ + + + T A+Q+R GG K + +R +M K+
Sbjct: 1099 GPELAKHLNENYNFRPST-CAYQVRIGGNKGVLVVNNQAPDPSGIYIRPSMVKFNPIDCG 1157
Query: 465 SESTSLDILANS-----KYQREGVARLRL----DNVFERKQREVVARLDAILTDSSKVQE 515
E +L+I + S K R+ ++ L DNVF Q + ++ I+ D++ ++
Sbjct: 1158 DEHRTLEICSVSTTSRCKLNRQVISLLSTLGTQDNVFFALQDHYLNQVAQIVNDTNASKQ 1217
Query: 516 ALELMSSAENTNVLKELLNCGYKPD-------AEPFLSMMPQTFHASNLLELRTRARIFI 568
A+ + PD +P++ + + + + ++ + I I
Sbjct: 1218 AI-----------------VEFFPDITEGELYQDPYIRRILISLYKLKMERIQQKCHIEI 1260
Query: 569 QNGQAMMGCLDEKGTL------------------------EYGQGLMVVAKKPCLHPGDM 604
++ + ++G D +L + +GL++V K PC HPGD+
Sbjct: 1261 KDSRMLLGVCDPTNSLPPNTVFVQLEEEDEDDDDDGRKYEKVIEGLVMVIKNPCTHPGDV 1320
Query: 605 RVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTA 664
R L+AVD L H+ + ++F KG+ P+ E SGSD DG+ YF C+D I TA
Sbjct: 1321 RYLKAVDNIRLRHLRNVLVFSTKGDVPNFKEISGSDLDGDRYFFCYDKSLIGNRSESETA 1380
Query: 665 YTPAPEKILARDVTIEDVEEYFA---DYIVN---DSLGIICNAHVVYAYSEPDKAMSNRC 718
Y E + D + FA Y N LG + ++H+ A S+ A
Sbjct: 1381 YL-VVETVSNNDKKANVFNDPFALSSMYSTNAERQELGKLYHSHL--AISDQYGANHKYS 1437
Query: 719 PDLVKLSSIVGDFSKTGVAATIPSRLRVKI----YPDFMEKQDKT--WYESQHIVGNLYR 772
+ K D+ KTG+ TIP + +++ YP +M++++ T +Y+S+ I+G +Y
Sbjct: 1438 IQISKECFKEIDYPKTGIHGTIPKEVNIRLQTVGYPHYMQRENSTRVYYQSKKIMGKMYD 1497
Query: 773 EVNGIA 778
+++ +
Sbjct: 1498 QIDQLV 1503
>gi|429964430|gb|ELA46428.1| hypothetical protein VCUG_02106 [Vavraia culicis 'floridensis']
Length = 2289
Score = 132 bits (332), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 108/203 (53%), Gaps = 16/203 (7%)
Query: 576 GCLDEKGTLEYGQGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNE 635
G L + G + G +VAK PCLHPGD+R ++ V L H + ++F KG RP N
Sbjct: 1172 GVLRDDGVVVGGA---IVAKNPCLHPGDIRKVQCVYKKELMHYKNVLVFSKKGRRPVFNM 1228
Query: 636 CSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAP----EKILARDVTIEDVEEYFADYIV 691
CSGSD DG++YFV WD IPP++ P Y + E I+A+D+ +F +
Sbjct: 1229 CSGSDLDGDLYFVSWDARLIPPIEHFPQNYQSSSYLSKEHIVAQDMV-----NFFTRFAK 1283
Query: 692 NDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPD 751
D LG I NAH+V YS+ + L L S+ DF KTG A +P L YPD
Sbjct: 1284 EDELGKISNAHLV--YSDVHGITDPQALKLAYLFSMGVDFPKTGYIARLPQNLEPYEYPD 1341
Query: 752 FMEKQDKTWYESQHIVGNLYREV 774
FME+ YES ++G +YR V
Sbjct: 1342 FMERMRS--YESVRVMGMMYRRV 1362
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 32/180 (17%)
Query: 420 IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK-----------VTLRNNMFKYKSEST 468
IG+IS +A+ VAKK TP+AFQIR+ GYK + LR +M K+KS
Sbjct: 941 IGRISNRVADMVAKKLKLT-STPTAFQIRFAGYKGVLVRANIPHDLMLRKSMRKFKSTYN 999
Query: 469 SLDILANSKYQREGVARLRLDNVFERKQREVVARLDAILTDSSKV----QEALELMSSAE 524
L++++ S+ ++ R+++ L+ + E L M A
Sbjct: 1000 VLEVVSYSQ------------SIECYLNRQIIMILEGLGVPKHNFICLQNEYLMHMYRAI 1047
Query: 525 NTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL 584
N +++ + + + M E+ + RIF++NG +MG +DE+G L
Sbjct: 1048 NHSLIGKYC----RISGVALVDRMSGALLGRLFREMCAKGRIFVKNGIVLMGVIDEEGVL 1103
>gi|429963046|gb|ELA42590.1| hypothetical protein VICG_00342 [Vittaforma corneae ATCC 50505]
Length = 2092
Score = 132 bits (332), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 103/350 (29%), Positives = 165/350 (47%), Gaps = 37/350 (10%)
Query: 450 GGYKVTLRNNMFKYKSESTSLDILANSKYQREGVARLRLDNVFERKQREVVARLDAILTD 509
G + +R +M K+ S +L+I+A SK + R ++ + E + +D L D
Sbjct: 1093 GTPDLIVRKSMNKFDSSYRTLEIIAVSKSSSFYLNR-QIILILEGLGVPIQIFID--LQD 1149
Query: 510 SSKVQEALELMSSAENTNVLKELLNCGYKPDAE-PFLSMMPQTFHASNLLELRTRARIFI 568
+Q L +S + T +K+ +N + PF + + EL T+++I I
Sbjct: 1150 KY-IQNMLSKLSQ-DFTLFIKKYVNTTMNISTDLPFYRKLQSPILSKVFEELNTKSKILI 1207
Query: 569 QNGQAMMGCLDEKGTLE---------------------YGQGLM-----VVAKKPCLHPG 602
G++ +G LDE G LE YG ++ +VAK P +HPG
Sbjct: 1208 GQGRSAIGVLDELGILEEDQIFCMFQKDVDESMENLKDYGSYIVPNCYCIVAKNPVMHPG 1267
Query: 603 DMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQP 662
D+RV++ VD P LH++ + ++F KG RP N+CSGSD DG+I+ V W IP F+P
Sbjct: 1268 DIRVVKCVDAPKLHYLKNVIVFSKKGSRPIFNQCSGSDLDGDIFLVSWCKALIPKATFKP 1327
Query: 663 TAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLV 722
Y ++ V + D+ ++ ++ LG I AH A S+ + + L
Sbjct: 1328 YNYINTCA-LIKDKVLLSDIVNFYIRHMKFYQLGQI--AHSYLAMSDKFSIFNEKSLRLS 1384
Query: 723 KLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYR 772
+ + D+ KTG +IP L YPDFME+ Y S +G+LYR
Sbjct: 1385 DIFNKNIDYVKTGHITSIPEDLIPTEYPDFMERSPS--YYSTKAIGHLYR 1432
Score = 73.2 bits (178), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 100/202 (49%), Gaps = 31/202 (15%)
Query: 272 LVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGER 331
++TP V F S SNRV+ ++ + D F ++ +E+ GK ++ +T+G
Sbjct: 840 ILTPLSVIFNYETTSESNRVLNNF--DPDKFCKVVIREEN-GK--DRFMADLAKNTDG-- 892
Query: 332 RTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE---LTAAD-IRERM 387
+Y+ + NG VIG +K+ LA + SQ + + W + AD I+ +
Sbjct: 893 ---VYDYFRRVMLNGFVIGLRKYFFLAMTTSQLKIHGSWFITPYEHDDMVIGADYIKSWI 949
Query: 388 GDFREIKNVTKYAARLGQSFASS------REALHVD----------SNIGKISAELAETV 431
G+F +IKN+ KYA R+G + +S+ + + VD IG I+ + A +
Sbjct: 950 GNFHKIKNIGKYAIRIGLALSSTTPTYPFNDFVEVDDIQKNSYCFTDGIGLITKKWAHNI 1009
Query: 432 AKKCGYAIYTPSAFQIRYGGYK 453
+ G + PSAFQIR+GGYK
Sbjct: 1010 SNILGLG-FIPSAFQIRFGGYK 1030
>gi|409079686|gb|EKM80047.1| hypothetical protein AGABI1DRAFT_72859 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1258
Score = 132 bits (332), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 159/714 (22%), Positives = 286/714 (40%), Gaps = 155/714 (21%)
Query: 202 TLLPGFVFSCNSDLNQDGKHALEMLFHLRECCYD------PVSWLREQYRKHVSSGQFPT 255
+LLP C +D + L E D P + RK+V
Sbjct: 362 SLLPRVRKLCQEHPQRDHAYVDHFLRKYGEVLQDRGPRVSPTDCFEQVKRKYVP------ 415
Query: 256 SPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKL 315
P LD + + TP+++ GP + SNR++R Y + F+R+ F DED +
Sbjct: 416 -PKATLD--IFRCRHVTFTPTRMLMEGPYATQSNRIIRQYSGYEEFFIRVDFRDEDRLQY 472
Query: 316 YSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFAS- 374
+G R ERV + L++G I ++FE LA+S+S RE+ +W
Sbjct: 473 RWN------REVDGASFVR--ERVGTILKDGFTIAGRQFEFLAYSSSALREHAVWFMCPF 524
Query: 375 ---RPELTAAD---IRERMGDFRE---IKNVTKYAARLGQSFASSREALHVDSN------ 419
P+ D IRE++G+F+ +K +KYAARL Q+F ++ ++ + +
Sbjct: 525 EHHDPKYGRVDSMKIREQIGNFKGTDLMKQPSKYAARLAQAFTATEASVSIKRDEWEEIE 584
Query: 420 --------------------IGKISAELAETV-AKKC------GYAIYTPSAFQIRYGGY 452
+G IS L + + A+ C G PSA+QIR+ GY
Sbjct: 585 DIKPPNFEDGKPNPYLFTDGVGSISKSLGDKIWAELCSNRRDHGENSIQPSAYQIRFLGY 644
Query: 453 KVTLRNNMFKYKSESTSLDILANSKYQ----REGVARLRLDNVFERKQREVVAR------ 502
K + + K+ + L NS + + VA + + F R + R
Sbjct: 645 KGVVAVDEQLDKTGAGKHMRLRNSMRKFLVVNDDVAPIEIAQAFAHPNRCYLNRPLVMLL 704
Query: 503 ------LDAILTDSSK-VQEALELMSSAEN----------------TNVLKELLNCGYK- 538
+DA LT K V +A + S + + ++K+L G +
Sbjct: 705 EDLGVNVDAFLTLQDKEVAKARTIHDSIDRFLSVISEHGLGRSFRFSYLVKQLQGLGLEI 764
Query: 539 ----PDA----EPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDE---------- 580
PD PFL + + + +++ ARI + + ++G DE
Sbjct: 765 NSKDPDKLNVDTPFLKQVREVAMMDVMRDIKHSARILVPDSHLLVGIADEGPAYVSAGFE 824
Query: 581 ------------------KGTLEYGQGLMVVAKKPCLHPGDMRVLRAVDVPA------LH 616
G E+ +G +V + P H GD++ +RA+ P
Sbjct: 825 NVYCLPPGFIYACVQESPDGKAEWLEGHCLVTRSPVAHIGDVQRVRAIGKPPQGKLCLFS 884
Query: 617 HMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQ-PTAYTPAPEKILAR 675
H+ + ++ ++G R + G D DG+++ V ++ + P+ ++ P Y K +
Sbjct: 885 HIKNALVMSSQGNRSLASCLGGGDVDGDLFQVI-QYEPLLPMTYELPMEYESVGTKAITT 943
Query: 676 DVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTG 735
+ T++D+ ++ +YI +D LG++ + ++ A C L +L S D+ K G
Sbjct: 944 ECTVDDICDFVVEYINSDVLGLLSDRLLMIADQSKLGMNDKDCIRLAELCSQAVDYPKNG 1003
Query: 736 VAA-----TIPSRLRVKIYPDF-----MEKQDKTWYESQHIVGNLYREVNGIAP 779
+ +P L ++ PD+ + ++ +Y S +G LYR ++ P
Sbjct: 1004 IPVDLNKEKLPHTL-IRCKPDWHAAEVVSPRETDYYRSTRALGELYRNISLTEP 1056
>gi|426198551|gb|EKV48477.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
Length = 1258
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 149/666 (22%), Positives = 271/666 (40%), Gaps = 168/666 (25%)
Query: 257 PAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLY 316
P LD + + TP+++ GP + SNR++R Y + F+R+ F DED +
Sbjct: 416 PKATLD--IFRCRHVTFTPTRMLMEGPYATQSNRIIRQYSGYEEFFIRVDFRDEDRLQYR 473
Query: 317 STVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFAS-- 374
+G R ERV + L++G I ++FE LA+S+S RE+ +W
Sbjct: 474 WN------REVDGASFVR--ERVGTILKDGFTIAGRQFEFLAYSSSALREHAVWFMCPFE 525
Query: 375 --RPELTAAD---IRERMGDFRE---IKNVTKYAARLGQSFASSREALHVDSN------- 419
P+ D IRE++G+F+ +K +KYAARL Q+F ++ ++ + +
Sbjct: 526 HHDPKYGRVDSMKIREQIGNFKGTDLMKQPSKYAARLAQAFTATEASVSIKRDEWEEIED 585
Query: 420 -------------------IGKISAELAETV-AKKC------GYAIYTPSAFQIRYGGYK 453
+G IS L + + A+ C G PSA+QIR+ GYK
Sbjct: 586 IKPPKFEDGKPNPYLFTDGVGSISKSLGDKIWAELCSNRRDHGENSIQPSAYQIRFLGYK 645
Query: 454 -----------------VTLRNNMFKYKSESTSLDILANSKYQREGVARLRLDNVFERKQ 496
+ LRN+M K+ ++ N + VA + + F
Sbjct: 646 GVVAVDEQLDKTGAGKHMRLRNSMRKF--------LVVN-----DDVAPIEIAQAFAHPN 692
Query: 497 REVVAR------------LDAILTDSSK-VQEALELMSSAEN----------------TN 527
R + R +DA LT K V +A + S + +
Sbjct: 693 RCYLNRPLVMLLEDLGVNVDAFLTLQDKEVAKARTIHDSIDRFLSVISEHGLGRSFRFSY 752
Query: 528 VLKELLNCGYK-----PDA----EPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCL 578
++K+L G + PD PFL + + + +++ ARI + + ++G
Sbjct: 753 LVKQLQGLGLEINSKDPDKLNVDTPFLKQVREVAMMDVMRDIKHSARILVPDSHLLVGIA 812
Query: 579 DE----------------------------KGTLEYGQGLMVVAKKPCLHPGDMRVLRAV 610
DE G E+ +G +V + P H GD++ +RA+
Sbjct: 813 DEGPAYVSAGFENVYCLPPGFIYACVQESPDGKAEWLEGHCLVTRSPVAHIGDVQRVRAI 872
Query: 611 DVPA------LHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQ-PT 663
P H+ + ++ ++G R + G D DG+++ V ++ + P+ ++ P
Sbjct: 873 GKPPQGKLCLFSHIKNALVMSSQGNRSLASCLGGGDVDGDLFQVI-QYEPLLPMTYELPM 931
Query: 664 AYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVK 723
Y K + + T++D+ ++ +YI +D LG++ + ++ A C L +
Sbjct: 932 EYESVGTKAITTECTVDDICDFVVEYINSDVLGLLSDRLLMIADQSKLGMNDKDCIRLAE 991
Query: 724 LSSIVGDFSKTGVAA-----TIPSRLRVKIYPDF-----MEKQDKTWYESQHIVGNLYRE 773
L S D+ K G+ +P L ++ PD+ + ++ +Y S +G LYR
Sbjct: 992 LCSQAVDYPKNGIPVDLNKEKLPHTL-IRCKPDWHAAEVVSPRETDYYRSTRALGELYRN 1050
Query: 774 VNGIAP 779
++ P
Sbjct: 1051 ISLTEP 1056
>gi|4138610|emb|CAA09895.1| RNA-directed RNA polymerase [Triticum aestivum]
Length = 107
Score = 132 bits (331), Expect = 1e-27, Method: Composition-based stats.
Identities = 65/106 (61%), Positives = 72/106 (67%)
Query: 631 PHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYI 690
PH NECSGSD DG+IYFV WD D IP P YTPAP + L DV IE+V EYF +YI
Sbjct: 1 PHPNECSGSDLDGDIYFVSWDPDLIPTRMVAPMDYTPAPTETLDHDVMIEEVHEYFTNYI 60
Query: 691 VNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGV 736
VN+SLGII NAHVV+A E KA S C L +L SI DF KTGV
Sbjct: 61 VNESLGIIANAHVVFADREILKAESTPCIKLAELFSIAVDFPKTGV 106
>gi|353237176|emb|CCA69155.1| related to RNA-directed RNA polymerase (RdRP) [Piriformospora indica
DSM 11827]
Length = 1262
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 151/622 (24%), Positives = 256/622 (41%), Gaps = 115/622 (18%)
Query: 261 LDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVL 320
L G + + +TP+ + GP SN V+R Y + ++FLR++F DE+ ++
Sbjct: 461 LPPGWYWACSVTITPTTMRLEGPHHGQSNGVIRRYVEHSEHFLRVNFTDEERLQIR---W 517
Query: 321 SPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFAS-----R 375
+ T+ R ERV + L+NG IG + F+ LA+SNS RE+++W A
Sbjct: 518 DRDVDGTSFVR-----ERVGNFLKNGFDIGGRHFDFLAYSNSGLREHSMWFVAPFRDRYN 572
Query: 376 PELTAADIR--------ERMGD---FREIKNVTKYAARLGQSFASS-------------R 411
++ A IR ++ GD F+ K K+ ARL Q+F+++ +
Sbjct: 573 NQVNAEIIRNLIMDIELQKGGDTAEFKLEKQPAKFGARLAQAFSTTEPAIELKEDEVEIK 632
Query: 412 EALHVDSNIGKISAELAETVAKKCGYA---------IYTPSAFQIRYGG----------- 451
E + VD K T GY I+ +R GG
Sbjct: 633 EDIMVDPKFTKPDGPKTATEFTD-GYGCMSLAVRDEIWRALNPGVRLGGAKGVLGINPTL 691
Query: 452 --YKVTLRNNMFKYKSESTSLDILANSKY------QREGVARLRLDNV----FER----K 495
KV L +M K+KS+ L I + R +A L V F+R
Sbjct: 692 EGRKVVLHRSMVKFKSKDYGLHIAFKFDHPLKLFLNRPLIAILEHLGVQIDWFKRLLVNA 751
Query: 496 QREVVARLDAILTDSSKVQEALELMSSAENTNVLK-----ELLNCGYKPDAEPFLSMMPQ 550
Q ++ + L +I +++ E+ L + +L+ E+ + PF +
Sbjct: 752 QSKMNSTLLSIDEGAAEFFESRRLGLPFDLPRILRSLEKYEVTRVKLQEYDHPFNDFWLR 811
Query: 551 TFHASNL---LELRTRARIFIQNGQAMMGCLDEKGTLEYGQ------------------- 588
+ EL+ +ARI + G +++G D LE +
Sbjct: 812 CLDVAKAHIDRELKYKARIPVPFGCSLVGVPDVHMELEADEVYICKQERDREPKWFPEKP 871
Query: 589 GLMVVAKKPCLHPGDMRVLRAVDVPA-----LHHMVDCVLFPAKGERPHTNECSGSDQDG 643
G + + + P +HPGD++ +A P H +V+ V+F KG RP + G D DG
Sbjct: 872 GYVYITRSPSIHPGDVQKFKAKHPPRGSVYYNHPVVNAVVFSCKGARPPASMLGGGDVDG 931
Query: 644 EIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHV 703
+++ + + P +Y L R TIED+ ++ +YI +D +G++ H+
Sbjct: 932 DLFQIIPEKPDFKLEVGPPASYEVEDTLTLERPTTIEDIADFVVEYINSDKMGLVAIQHL 991
Query: 704 VYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAAT---IPSRLRVKIYPDFMEKQDK-- 758
+ A +C L +L S DF+K+G + +P R PDF K+ +
Sbjct: 992 ILADQSNSGLHDPKCLKLAELHSKAVDFAKSGKPVSFQDLPKRY-FPYTPDFQHKETRFD 1050
Query: 759 ---TWYESQHIVGNLYREVNGI 777
++YES +G LYR + I
Sbjct: 1051 DQTSYYESPKALGVLYRMIKHI 1072
>gi|302698389|ref|XP_003038873.1| hypothetical protein SCHCODRAFT_64962 [Schizophyllum commune H4-8]
gi|300112570|gb|EFJ03971.1| hypothetical protein SCHCODRAFT_64962 [Schizophyllum commune H4-8]
Length = 984
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 143/549 (26%), Positives = 228/549 (41%), Gaps = 124/549 (22%)
Query: 262 DGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEI-DNFLRLSFVDEDLGKLYSTVL 320
DG + ++VTP+ + GP SNR++R Y + D FLR+SFV+E G+L
Sbjct: 403 DGSVFDSLHVIVTPTTMILEGPFPERSNRIIRMYDAKYHDCFLRVSFVEE--GRLQYRF- 459
Query: 321 SPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMF------AS 374
+ RT I ER+ L+ G+ I KFE LA+S S +E+ +W
Sbjct: 460 -----DREVDGRTFIRERIGPLLKKGLHIAGHKFEFLAYSQSALKEHAVWFVKPFRPDGQ 514
Query: 375 RPELTAADIRERMGDFREIKN---VTKYAARLGQSF--------------------ASSR 411
R ++ AA I +GDF K+ +YAARL Q+F ++S
Sbjct: 515 RADVNAATIIAGIGDFSTSKDRFCPARYAARLSQAFTATDASVFVEAEEIGYHDDISTSD 574
Query: 412 EALHVDSNIGKISAELAETV-------AKKCGYAIYTPSAFQIRYGGYK----------- 453
A H +G +S E+A K+ + TP++FQ+R G K
Sbjct: 575 GAYHFTDGVGTMSKEMARDTWTELRRTRKRARKSKGTPASFQVRLMGSKGMLSVDYKLRG 634
Query: 454 --VTLRNNMFKYKSESTSLDILANSKYQREGVARLRLDNV------------FERKQREV 499
V LR +M K+++ SL++ + R G L + F + Q
Sbjct: 635 RAVCLRPSMIKFEAPD-SLNLEIARAFDRPGKYYLNRPLIMLLEGLGVPYETFLKYQDLA 693
Query: 500 V---ARLDAILTDSSKVQEALELMSSAENTNVLKEL--LNCGYKPDAEPFLSMMPQTFHA 554
V R L ++++ EA L +S +VL L L + P + F M +
Sbjct: 694 VRDAHRATESLEHAARMLEAFGLGTSFRLPSVLLNLEKLGIDHLP-GDAFYDRMLEFAIN 752
Query: 555 SNLLELRTRARIFIQNGQAMMGCLD-----------------EKGTLEYGQGLMVVAKKP 597
L L+ ARI I ++G D + +EY +G +++++ P
Sbjct: 753 HVLRVLKNHARIPIPGAYTLVGVADVHRYLAEGEVFACVKEVDSNRIEYLEGDILISRSP 812
Query: 598 CLHPGDMRVLRAVDVP------ALHHMVDCVLFPAK--------------------GERP 631
+HPGD++V+RA+ P A + + V+F K G RP
Sbjct: 813 TIHPGDVQVVRAIGRPPAGSPFAQEPLANTVVFSVKGMLLGPFQARHEQHLTVSHSGSRP 872
Query: 632 HTNECSGSDQDGEIY-FVCWD--HDRIPPLQF-QPTAYTPAPEKILARDVTIEDVEEYFA 687
+ G D DG++Y +C D H P + P +Y AP K+L R ++DV ++
Sbjct: 873 LPSMLGGGDLDGDVYNLICLDTTHPEFRPARTCDPASYAAAPRKVLDRPANMDDVADFVL 932
Query: 688 DYIVNDSLG 696
D++ D G
Sbjct: 933 DFMSFDVRG 941
>gi|393247225|gb|EJD54733.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 1245
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 150/611 (24%), Positives = 260/611 (42%), Gaps = 121/611 (19%)
Query: 271 ILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGE 330
+ V+PS V GP SNR++ ++ + ++F+R++F D D G+ + N +
Sbjct: 451 VAVSPSSVSITGPIPDRSNRILHAFGNFQEHFIRVAFTDND-GQTFRY-------DANVD 502
Query: 331 RRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMF------ASRPELTAADIR 384
+ + VL L+NG +G + FE LA+S S +++++WM A R +A+ IR
Sbjct: 503 TQALVRSHVLPILQNGFKLGGRLFEYLAYSQSALKQHSVWMVHPFTDTAGR-RHSASTIR 561
Query: 385 ERMGDF-REIKNVTKYAARLGQSFAS---SREALHVDSNI----------------GKIS 424
MG F ++ + + AR+ +F++ S E L + + G IS
Sbjct: 562 ADMGTFTKDERCPARVGARMSLAFSATEPSGELLSSNRRMEPDIGGDGPACMSDGSGLIS 621
Query: 425 AE-LAETVAKKC-GYAIYT-------PSAFQIRYGGYK-------------VTLRNNMFK 462
E +A + C G + T PS Q+R GG K V LR +M K
Sbjct: 622 IEAMAAVWMEFCRGRSKRTVIRPPPPPSVIQVRVGGAKGTLFVDPMLPGRAVVLRPSMMK 681
Query: 463 YKSESTSLDILANSKYQREGVARLRL------------DNVFERKQREVVARLDA---IL 507
+++ I + + A L F R Q++VV R L
Sbjct: 682 FEAGERFNQIEVCMAFTKPSPAYLNRPLIMVLEARGVPKETFLRLQQDVVERTQLATRTL 741
Query: 508 TDSSKVQEALELMSSAENTNVLKELLN-CGYKPDAEPFL----SMMPQT--FHASNLLE- 559
++ + E+ L + + + P+ + ++ + + +T F +++L
Sbjct: 742 ESAAALLESNGLGGPVGLPTLFRRIRQRFSNFPEVDSYVLTQDAFVARTLDFTVNHVLRG 801
Query: 560 LRTRARIFIQNGQAMMGCLDEKGTL-----------------EYGQGLMVVAKKPCLHPG 602
L+ R RI I ++G D G L EY +G +VV++ P HPG
Sbjct: 802 LKFRGRIPIPFSWTLVGVPDHHGILNEGEIFVCIREEDISQVEYLEGDVVVSRSPTCHPG 861
Query: 603 DMRVLRAVDVP------ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIP 656
D+ +++A+ P A ++CV+F KG R + G D DG+ Y V P
Sbjct: 862 DVMIMKAIGRPPAGTAFATERPINCVVFSTKGARSPGSCLGGGDYDGDEYVVTKLPSLRP 921
Query: 657 PLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSN 716
P Y P + + R T+ED+ E+F ++++ND L I + + A S + +
Sbjct: 922 TKPAGPAMYKNTPRQDIGRPYTMEDIYEFFTNFVINDQLPRIASLWLRIADSSEESVYNE 981
Query: 717 RCPDLVKLSSIVGDFSKTGVAAT------IPSRLRVKIYPDF------MEKQDKTWYESQ 764
+C L +L S+ D+ KTGV P+R+ PD+ +D+ Y S+
Sbjct: 982 QCMKLAELHSVAVDYPKTGVPVNHSDIPQAPNRI-----PDWSISELGASDRDRV-YRSE 1035
Query: 765 HIVGNLYREVN 775
+G L+R V+
Sbjct: 1036 KALGYLFRAVS 1046
>gi|400596583|gb|EJP64354.1| RNA dependent RNA polymerase [Beauveria bassiana ARSEF 2860]
Length = 527
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/253 (33%), Positives = 122/253 (48%), Gaps = 43/253 (16%)
Query: 560 LRTRARIFIQNGQAMMGCLDEKGTL----------------------------EYG---- 587
++ + RI I+ +MGC+DE GTL +YG
Sbjct: 1 MKEKCRIQIEKSAFVMGCVDETGTLRGHSIQTEGSRGKNKAVLPQIFLQMSDRKYGNKTT 60
Query: 588 --QGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEI 645
QG+ + + P LH GD+RV+ AVD P L H+ D V+FP+KG+R + SG D DG+
Sbjct: 61 IIQGVCFIGRNPSLHAGDIRVVEAVDTPCLRHLKDVVVFPSKGDRSLPSILSGGDLDGDE 120
Query: 646 YFVCWDHDRIPPLQFQPTAY-TPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVV 704
YFV WD +P + P + TP + L R V ++D+ + Y+ ND LG + AH+
Sbjct: 121 YFVIWDSTLVPKIWNSPPMHSTPVTPQDLERGVEVDDLRNFAVKYMKNDCLGFVAVAHLA 180
Query: 705 YAYSEPDKAMSNR--CPDLVKLSSIVGDFSKTGVAATIP-SRLRVKIYPDFMEKQDKTWY 761
+A D N C L KL S D+ KTGV A +R + +P FM++ T Y
Sbjct: 181 HA----DALGLNHPICLQLAKLHSQAVDYLKTGVPAEWNRARYQPSKWPHFMQRNSCT-Y 235
Query: 762 ESQHIVGNLYREV 774
S +G LY V
Sbjct: 236 PSHKALGKLYNRV 248
>gi|170577358|ref|XP_001893975.1| RNA dependent RNA polymerase family protein [Brugia malayi]
gi|158599674|gb|EDP37189.1| RNA dependent RNA polymerase family protein [Brugia malayi]
Length = 261
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 127/262 (48%), Gaps = 47/262 (17%)
Query: 552 FHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ----------------------- 588
+H L + + +I G++M G +DE G L++GQ
Sbjct: 5 YHYLEKLIAKIQIQIPSHLGRSMFGVMDETGQLQWGQIFVQCTRNIWLKTPSPSAAKFIL 64
Query: 589 -GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYF 647
G +++ K PC+ GD+RV AVD+P LHH+VD V+FP G RPH +E +GSD DG+ Y
Sbjct: 65 KGKVMLTKNPCIVAGDVRVFEAVDIPELHHLVDVVVFPQHGPRPHPDEMAGSDLDGDEYS 124
Query: 648 VCWDHDRI-----PPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAH 702
V WD + I PPL F T T + I V +E + ++F +YI DS+G I NA
Sbjct: 125 VIWDQELIFEHNEPPLDF--TKSTSGNKIIDEAQVDLE-MRKFFVNYIKQDSIGSISNAF 181
Query: 703 VVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRL-------------RVKIY 749
+V A + S C ++ K S DF KTG A +R R + +
Sbjct: 182 LVNA--DLYGITSEVCINIAKKHSKAVDFPKTGDAPAPLTRQWTHDKNGNMLPPERAERW 239
Query: 750 PDFMEKQDKTWYESQHIVGNLY 771
PDFM K + Y S +VG LY
Sbjct: 240 PDFMCKNHEPSYISSRLVGQLY 261
>gi|340960580|gb|EGS21761.1| hypothetical protein CTHT_0036280 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1520
Score = 129 bits (325), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 111/381 (29%), Positives = 166/381 (43%), Gaps = 75/381 (19%)
Query: 421 GKISAELAETVAKKCGYAI----YTPSAFQIRYGGYK----------------VTLRNNM 460
G IS LA+ +A++ G YTPS QIRY GYK + +R +M
Sbjct: 42 GLISPHLAQDLARRLGIVFRDRRYTPSVLQIRYRGYKGVVTVDPRMTSDPRILLRMRKSM 101
Query: 461 FKYKS-ESTSLDILANSKYQREGVARLRLDNVFERKQREVVARLDAILTDSSKVQEALE- 518
K+ + S ++ SK G EV+ L+A+ D +++ +
Sbjct: 102 KKFSGGDDHSFSVVEYSKPFTYGFL-----------NDEVIVLLNALGVDREIIKKKQDN 150
Query: 519 ----LMSSAENTNVLKELLNCGYKPD------AEPFLSMMPQTFHA-----SNLLELR-- 561
L ++ + L+ PD E F ++ P+ + +L R
Sbjct: 151 HFKFLADASRDPRSAFRFLSGLNMPDLAESVLVESFDAIRPRIRSLVKNEYAKMLNKREE 210
Query: 562 TRARIFIQNGQAMMGCLDEKGTLEYGQ----------GL--------MVVAKKPCLHPGD 603
+ RI I + + G D G L+ G+ GL ++V + PCLHPGD
Sbjct: 211 QKCRILIPKSRLLFGVCDAWGVLKEGECAVKITLEENGLPMALKNCEVLVTRNPCLHPGD 270
Query: 604 MRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPT 663
++ R V+ P L H+VDC++F KG+RP + SG D DG+ +FVCWD D IP QP
Sbjct: 271 LQKFRVVERPELSHLVDCIVFSTKGKRPAADMMSGGDLDGDTFFVCWDLDLIPKTLSQPA 330
Query: 664 AYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVK 723
Y E I +T +D E+F Y N SLG + N ++ +A + MS C +L +
Sbjct: 331 KYPGVKEPIRFTPITDDDRLEFFVRY-TNASLGRVKNLYLDWARA--GGPMSPECQELNR 387
Query: 724 LSSIVGDFSKTGVAATIPSRL 744
L S D G IP RL
Sbjct: 388 LFSQCVD----GNRIKIPPRL 404
>gi|241083169|ref|XP_002409050.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
gi|215492623|gb|EEC02264.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
Length = 167
Score = 129 bits (324), Expect = 7e-27, Method: Composition-based stats.
Identities = 64/162 (39%), Positives = 91/162 (56%), Gaps = 29/162 (17%)
Query: 571 GQAMMGCLDEKGTLEYGQ----------------------------GLMVVAKKPCLHPG 602
G+ M+G LDE +LEYG+ G ++V K PCLHPG
Sbjct: 6 GRNMLGVLDETQSLEYGEVFVQFTEHQLDDGSCEDDPKVPTTKILVGAVLVTKCPCLHPG 65
Query: 603 DMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQP 662
D+R AVD+P LHH+ DC++FPAKG RPH NE +GSD DG+ Y V W+ D + P QP
Sbjct: 66 DVRKFAAVDIPGLHHVKDCIVFPAKGPRPHPNEMAGSDLDGDEYIVIWEKDLLFPGNNQP 125
Query: 663 TAYTPAPEKILARDVTIED-VEEYFADYIVNDSLGIICNAHV 703
++ D ++ED + ++ +YI ND++GI+ NAH+
Sbjct: 126 AMVFCDHSSVVPSDDSLEDGMVKFICNYIKNDNVGILSNAHL 167
>gi|330794390|ref|XP_003285262.1| hypothetical protein DICPUDRAFT_149105 [Dictyostelium purpureum]
gi|325084804|gb|EGC38224.1| hypothetical protein DICPUDRAFT_149105 [Dictyostelium purpureum]
Length = 2292
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 155/674 (22%), Positives = 267/674 (39%), Gaps = 130/674 (19%)
Query: 262 DGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDED------LGKL 315
D I V ++ VTP+++ P ++ NRV+RS+ ++ FL +F DE+ L K
Sbjct: 1074 DDLFIPVKEVFVTPTRIVLVPPRLTSGNRVIRSFGNDPSRFLLYNFTDENFEPFLGLNKS 1133
Query: 316 YSTVLSPQISSTNGERRTRIYERVLSTLRNG---IVIGDKKFETLAFSNSQERENTLWMF 372
+ +L Q L+NG I + + + + S SQ ++ + W +
Sbjct: 1134 HPLILDGQSKH----------------LKNGLEIIPLSGEYYRYIGNSQSQSKKYSAWFY 1177
Query: 373 ASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN------------- 419
P+ D + G I + K + F+S+ +++ +D +
Sbjct: 1178 LEDPKYKIEDAFKWSGIDTSIP-MRKVYRQFCLLFSSTSKSIVIDKSKYKTIDDVYDSTG 1236
Query: 420 -------IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK--VTLRNNMFKYKSESTSL 470
G I L + + KK Y T A+QIR GG K V L + S+
Sbjct: 1237 AHNFTEGCGIIGKYLVDAINKKMNYHPCT-CAYQIRIGGSKGVVVLNDTDSISLGNGKSI 1295
Query: 471 DILANSKYQREGVARLRLDNVFERKQR--EVVA------------RLDAILTDSSKVQEA 516
+ Y RE + + D + R E+++ ++ +L ++
Sbjct: 1296 PMDPTCIYIRESMTKFMKDPSDDETHRTLEIISVSTTSRCKLNRQAINLLLNAGTEESSI 1355
Query: 517 LELMSSAENTN--------VLKELLNCGYKPDAEP------FLSMMPQTFHASNLLELRT 562
L + + N N + K+LLN Y +E ++ + + LL ++
Sbjct: 1356 LSFLDKSLNENAQTLVDIGLSKDLLNEFYPNISEYELFNDYYIRTIVLKHFKTKLLRIQD 1415
Query: 563 RARIFIQNGQAMMGCLDEKGTLEYGQ---------------------GLMVVAKKPCLHP 601
+ I +++ + ++G D G L Q G + V K PC HP
Sbjct: 1416 KCHIEVEDSRNVLGVTDFSGKLGPNQVYLEVADFDDNNNIIRSKVITGRVAVLKNPCHHP 1475
Query: 602 GDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRI------ 655
GD+R+L AVD+P LH + + F GE P+ ECSGSD DG+ YF+ +D+ I
Sbjct: 1476 GDIRILEAVDIPLLHGKRNILFFSINGEVPNFKECSGSDLDGDRYFIVYDNVLINDKMKN 1535
Query: 656 -PPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAM 714
P + A T E DV + ++++ +LG + N H++ S+ +
Sbjct: 1536 SDPYLGESVAATVGGEGEGLHDVYLFNIDK--------TNLGKLSNKHLI--ISDLEGVD 1585
Query: 715 SNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKI----YPDFMEKQ---DKTWYESQHIV 767
S DL +I D KT +P+ + + P FM Y S ++
Sbjct: 1586 SEIAIDLAIQCAIEVDSVKTNKHGVLPANAKAAMNKCGIPHFMASTTLGTTNIYHSDKVI 1645
Query: 768 GNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGN 827
G +Y A F E + D +M V+G+K Q + YR Y ++ N
Sbjct: 1646 GQIYDS----ASRLMWFGDFLPEIKV---DENMLVDGYKNYIDQKNLITYRL-YKTRINN 1697
Query: 828 LMDYYGIKTEAEML 841
L+ YG +E ++L
Sbjct: 1698 LLRIYGSNSEEDLL 1711
>gi|409046078|gb|EKM55558.1| hypothetical protein PHACADRAFT_173705 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1167
Score = 127 bits (318), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 141/606 (23%), Positives = 252/606 (41%), Gaps = 108/606 (17%)
Query: 271 ILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGE 330
+ +TPS+ GP +NRV+R Y NFLR+ F DE+ G Y ++
Sbjct: 381 VTITPSRFILSGPFPERNNRVMRKYASHTSNFLRVDFADEE-GFQY------RMDRVLDS 433
Query: 331 RRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMF----ASRPELTAADIRER 386
RR + ER L G V+ D+ F+ L +S S +++ +W S +T I
Sbjct: 434 RRF-VRERFGRFLSQGFVLVDRHFDFLQWSQSGLKQHAVWFVKEFQMSHDTVTVDSIIAD 492
Query: 387 MGDF-------REIKNVTKYAARLGQSFASSREALHV------------DSN-------- 419
+G F R + + AR +F ++ A+ V D+N
Sbjct: 493 LGTFHDTPYDPRLMYCPARLGARRALAFTTTDAAVEVEAEEIVVEPDIEDANGKRSFTDG 552
Query: 420 IGKISAELAETV-------AKKCGYAIYTPSAFQIRYGGYKVT-------------LRNN 459
G IS EL V +++ A P Q R+ G K T +R +
Sbjct: 553 AGLISEELMTAVWEELRKKSRRYRRAHMMPDVIQHRFQGSKGTSTVSRRLPGRVLVIRPS 612
Query: 460 MFKYKSESTSLDILANSKYQREGVARLR------LDNVFERKQREVVARL-DAI------ 506
M K+++ + + +A + + R G RL L+ + R E++ +L DA+
Sbjct: 613 MIKFEATGSRMVEVA-AAFTRAGPFRLNRPLIMLLEGLRIRGGYEILKKLQDAVIQETKD 671
Query: 507 ----LTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRT 562
L+ ++++ E L + + ++V L +PF + L +L+
Sbjct: 672 AANSLSTAARLLEPHGLGTGFKVSSVFANLARLELDSMPDPFFHRVLNVAIYHILRDLKY 731
Query: 563 RARIFIQNGQAMMGCLDEKGTLEYGQ-----------------GLMVVAKKPCLHPGDMR 605
ARI + G ++G D G L G+ G M++++ P +HPGD++
Sbjct: 732 HARIPVPGGYTLVGVADPYGYLGEGEVFACVTTSTNAEPIFLEGEMMISRSPTVHPGDVQ 791
Query: 606 VLRAVDVPAL------HHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ 659
++RA+ P H +++ ++F G+RP + D DG++Y + +P
Sbjct: 792 IVRAIGRPPKGSEFDKHPIMNALVFATIGKRPPASCLGNGDLDGDVYVCTTKEELLPKQT 851
Query: 660 FQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCP 719
P +Y A K + T +D+ ++ ++I +D++GII + + A + C
Sbjct: 852 RAPASYDAAARKEVPHQSTQQDMADFVTEFICSDNIGIIASRWLELA--DKRGIFDPGCL 909
Query: 720 DLVKLSSIVGDFSKTGVAAT---IPSRLRVKIYPDFMEKQ---DKTWYESQHIVGNLYRE 773
L L S+ D+ KTG+ +P + PD+ + + +Y+S +G L+RE
Sbjct: 910 RLAYLHSLATDYPKTGLPVPLEYLPGTDMRRGRPDWSAPETEGSRRFYQSTRYLGRLFRE 969
Query: 774 VNGIAP 779
V P
Sbjct: 970 VRLPVP 975
>gi|116195262|ref|XP_001223443.1| hypothetical protein CHGG_04229 [Chaetomium globosum CBS 148.51]
gi|88180142|gb|EAQ87610.1| hypothetical protein CHGG_04229 [Chaetomium globosum CBS 148.51]
Length = 1676
Score = 126 bits (317), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 114/425 (26%), Positives = 186/425 (43%), Gaps = 92/425 (21%)
Query: 391 REIKNVTKYAARLGQSFASSREALHVDSNI-----------GKISAELAETVAKKCGYAI 439
R + Y+ R Q + S R + +I G ++ +LA+ +A++ G
Sbjct: 139 RRLSGSASYSPRPRQPWPSRRNRVEDIPDIETADYIFTDGCGLVAPKLAQELARRVGIVF 198
Query: 440 ----YTPSAFQIRYGGYK----------------VTLRNNMFKYKS-ESTSLDILANSKY 478
YTPS QIRY GYK + +R +M K+ + S ++ +SK
Sbjct: 199 RDRRYTPSVLQIRYRGYKGVVTVDPTMAADKKYLLRMRKSMKKFSGGDDHSFSVVEHSKP 258
Query: 479 QREGVARLRLDNVFERKQREVVARLDAILTDSS----KVQEALELMSSAE---------- 524
G L++ EV+ LDA+ D + K +E ++ A
Sbjct: 259 YTYGY----LND-------EVIILLDALGVDRAVIKRKQEEHFRFLADATQDPRSAFRFL 307
Query: 525 ---NTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELR--TRARIFIQNGQAMMGCLD 579
N L E + P + + + +A +L R + RI + + + G D
Sbjct: 308 CYVNMPQLAERVLMDSLESVRPRIQALVKNEYA-KMLNKRDEQKCRILLPKSRLLFGVCD 366
Query: 580 EKGTLEYGQGLM------------------VVAKKPCLHPGDMRVLRAVDVPALHHMVDC 621
G L+ G+ + +V + PCLHPGDM+ + V+ L H+VDC
Sbjct: 367 AWGVLKEGECAVKITMDGDGQPAALKGCDVLVTRNPCLHPGDMQKFKVVEKRELAHLVDC 426
Query: 622 VLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIED 681
++F ++G RP + SG D DG+ +FVCWD D +P QP Y A E++ +T +D
Sbjct: 427 IVFSSQGRRPAADLMSGGDLDGDTFFVCWDSDIVPATLSQPAQYPGAKERLRFEPITDDD 486
Query: 682 VEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSS--IVGDFSKTGVAAT 739
EYFA Y N SLG + N ++ +A + AM+ +C +L +L S + G+F +
Sbjct: 487 RLEYFARY-NNASLGRVKNLYLDWARAR--GAMAEQCQELNRLFSQCVDGNFIR------ 537
Query: 740 IPSRL 744
IP +L
Sbjct: 538 IPQKL 542
>gi|66813222|ref|XP_640790.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
gi|60468778|gb|EAL66778.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
Length = 2285
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 169/717 (23%), Positives = 289/717 (40%), Gaps = 157/717 (21%)
Query: 262 DGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLS 321
+ G + +N+I VTPS++ P ++L NR++R + E F+ +F DE+ L
Sbjct: 1068 NNGWVLINEIFVTPSRIVLKPPRLTLGNRILRKFSPE--KFILFNFTDEN--------LE 1117
Query: 322 PQISSTNGERRTRIYERVLSTLRNGIVI---GDKKFETLAFSNSQERENTLWMFASRPEL 378
P T+ ER+ + NGI I KK+ + S SQ R + W
Sbjct: 1118 PFRGLNKSSPLTKTIERIFN---NGIEIIQGSGKKYFFIGCSQSQVRNYSAWFVLEDKVT 1174
Query: 379 TAADIRERMGDFREIKNVTKYAARLGQSFAS-----------------SREALHVDSNIG 421
G E + K L F++ S+E + G
Sbjct: 1175 NEKSALNWSGIKYESLQMIKVFRNLCLLFSTTLKSQVIYKIEMIPDIISKEGHNFTEGCG 1234
Query: 422 KISAELAETVAKKCGYAIYTPSAFQIRYGGYK-------------VTLRNNMFK----YK 464
I ++L E + ++ Y T A+QIR GG K + +R +M K YK
Sbjct: 1235 FIGSKLVELINQQNNYNSST-CAYQIRLGGSKGVLVLNENIDEMSLQIRPSMSKFELDYK 1293
Query: 465 S-----ESTSLDILANSKYQREGVARLRLDNVFERKQREVVARL-DAILTDSSKVQE-AL 517
S E +L+I++ S +R +L+ R+ + L +A + DS+ +Q +
Sbjct: 1294 SGQLDEEHKTLEIVSAS-----TTSRCKLN-------RQAITLLSNAGVEDSTFLQMLEV 1341
Query: 518 ELMSSAE---NTNVLKELLN------CGYKPDAEPFLSMMPQTFHASNLLELRTRARIFI 568
EL +A+ + N+ KELL Y+ + ++ + + S L++++ + I +
Sbjct: 1342 ELNQNAQTLVDVNLSKELLGDFFQHITEYELFNDYYIRSILLKLYKSKLIKIQDKCWIEV 1401
Query: 569 QNGQAMMGCLDEKGTLEYGQ---------------------GLMVVAKKPCLHPGDMRVL 607
+ + ++G D GTL G + V K PC HPGD+R L
Sbjct: 1402 KESRNLLGVCDTSGTLPEDTVYIEVEELDPIDNLMKPKVIIGRVAVLKNPCHHPGDVRFL 1461
Query: 608 RAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRI-------PPLQF 660
+A+D P L+ + + F G P+ +CSGSD DG+ YFV +D I P
Sbjct: 1462 KAIDHPPLNGKRNVLFFSTNGMVPNFKQCSGSDLDGDRYFVIYDQTLIREDLITHEPYLG 1521
Query: 661 QPTAYTPAPEKILARDVTIED----------------------VEEYFADYIVNDSLGII 698
+ P + + D E+ + + + + LG I
Sbjct: 1522 EEQTVNPLIGEEDSDDDQYENDDNDITIPTSTTTKSTNNTPTKLSDIYLKNVDKSKLGTI 1581
Query: 699 CNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIP----SRLRVKIYPDFME 754
N H+ A S+ +K S + +I D KT V IP S L+ K YP FM+
Sbjct: 1582 SNTHL--AISDIEKVSSINSIKVAIQCAIEVDSVKTSVHGIIPRDVKSILKEKGYPHFMK 1639
Query: 755 KQD-----------KTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVN 803
++ + +Y S ++G +Y A + F E + D + V
Sbjct: 1640 IKNGSTFEYKGGNQRKYYISDRVIGKIYDS----AENLLWFGDFLPEAKV---DESLLVQ 1692
Query: 804 GFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRDLEA 860
G+KE + + F +Y +K+ +++ +G ++E ++L I M F +K +EA
Sbjct: 1693 GYKE-YLNHENFTTYMDYKSKINSILRRFGAQSEEDLL---IGFMDPQFSEKLSIEA 1745
>gi|299752904|ref|XP_001832921.2| RNA-dependent RNA polymerase [Coprinopsis cinerea okayama7#130]
gi|298410053|gb|EAU88888.2| RNA-dependent RNA polymerase [Coprinopsis cinerea okayama7#130]
Length = 1251
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 163/654 (24%), Positives = 275/654 (42%), Gaps = 161/654 (24%)
Query: 256 SPAV-ALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSY-PDEIDNFLRLSFVDEDLG 313
SP++ A DG + VTP+ ++ GP SNRV+R+Y P +FLR++F DE G
Sbjct: 421 SPSLEATDGSNYQSLHVTVTPTAIFLEGPYPEQSNRVIRAYDPQHHSSFLRVTFADE--G 478
Query: 314 KLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMF- 372
+L Q+ + + + R L NG+ I ++FE LA+S S +E+++W
Sbjct: 479 RLQYRSSDRQV-----DHKAFVRARFGDILLNGLEIAGRRFEFLAYSMSALKEHSVWFVK 533
Query: 373 -------ASRPELTAADIRERMGDF-------REIKNVTKYAARLGQSFASS-------- 410
R +TA I + +G F R + +YAAR+ Q+F ++
Sbjct: 534 PFDVIENGHRVTVTADSIIQSLGTFDGLDFEPRLMHCPARYAARISQAFTATDLCTIEVQ 593
Query: 411 ----------------REALHVDSNIGKISA----ELAETVAKKCGYAIYTPSAFQIRYG 450
+ H D +G +S + + + K+ G A P+A Q+R G
Sbjct: 594 DLEITVIDDIEVTSGGHKWTHTD-GVGTMSPMASRAIWKALPKRKGPA---PAADQVRIG 649
Query: 451 G-------------YKVTLRNNMFKYKSESTSLDILANSKYQRE---------------- 481
G +K+ LR +M K+++ + +A + + R
Sbjct: 650 GAKGMLSVDYTLTGHKICLRPSMVKFEAPTRKYIEIARA-FDRPTPYYLNRPLIMILEGL 708
Query: 482 GVARLRLDNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNCGYK--- 538
GV ++ +R RE + + L ++ + ++ L SS ++V+ L G +
Sbjct: 709 GVPYSTFEHFQDRAVRET-RQAASSLRRAASMLDSYGLGSSFRLSSVMNSLDRLGIRHLN 767
Query: 539 PDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLD------------------E 580
PD F S + L +L+ ARI I ++G D E
Sbjct: 768 PDK--FYSKAMEFAINHVLRDLKNHARIPIPGAWTLVGVADVHRFLQPGEIFAYVKPTNE 825
Query: 581 KGTLEYGQGLMVVAKKPCLHPGDMRVLRAVDVPA------LHHMVDCVLFPAKGERPHTN 634
KG Y +G +++++ PC+HPGD+R+ RA+ P + + V+F
Sbjct: 826 KGF--YLEGDILISRSPCIHPGDVRITRAIGPPPPGSPFEREPLANTVVFNVLA------ 877
Query: 635 EC-SGSDQDGEIYFVCWDHDRIPPLQ-FQPT------AYTPAPEKILARDVTIEDVEEYF 686
C G D DG+ Y + D P LQ F+PT Y PA ++ L T+ DV E+
Sbjct: 878 SCLGGGDLDGDTYNLLPLSD--PALQGFRPTRIPEPSQYAPAEKRYLEEKSTMRDVAEFV 935
Query: 687 ADYIVNDSLGII-CNAHVV-----YAY--------SEPDKA--MSNRCPDLVKLSSIVGD 730
+YI++D LG++ N ++ +AY +PD + C L L S D
Sbjct: 936 LEYILSDVLGMVSINWRIIADQSRHAYLATYPTANGDPDSTGIFDSDCMLLADLHSAAVD 995
Query: 731 FSKTGVAA---TIPSRLRVKIYPDF-------MEKQDKTWYESQHIVGNLYREV 774
+ K+G IP RL+ K+ PD+ + + +Y S +G L+R +
Sbjct: 996 YPKSGTPVDFKKIP-RLKHKLKPDWNAPETLDAQALSEKYYVSSTALGKLFRRI 1048
>gi|392597023|gb|EIW86345.1| RdRP-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 1223
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 155/618 (25%), Positives = 255/618 (41%), Gaps = 113/618 (18%)
Query: 255 TSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGK 314
TSP +A DG ++ TPS GP SN V+R + + + FLR+SF DE+
Sbjct: 424 TSP-LARDGAY-EAYHLIFTPSTYILDGPLPDQSNSVLRRFGNH-ECFLRVSFQDENRAP 480
Query: 315 LYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWM--- 371
L IS +R I+ G + + +E L +S S RE+++W
Sbjct: 481 LRRD-FEYSISELMQKRFRPIF-------LGGHKVAGRHYEFLGYSMSGLREHSVWFVTP 532
Query: 372 FASRPELT--AADIRERMGDFREIK-NVTKYAARLGQSFASS--------REALHVDS-- 418
F S +T A IR ++GDF E++ + AR Q+F+++ RE +V+
Sbjct: 533 FTSDKGITMDAETIRGQLGDFSELQYKPARLGARWSQAFSTTDPSVTLERREIQYVNDIT 592
Query: 419 ---------NIGKISAELAETV------AKKCGYAI-YTPSAFQIRYGGYK--------- 453
IS ELA + ++ + + + PSAFQ R GG K
Sbjct: 593 SASGNCMTDGCSSISIELAREIWTSLNRTRRRTFPLKFPPSAFQFRLGGAKGVVVQNPDL 652
Query: 454 ----VTLRNNMFKYKSEST-SLDILANSKYQREGVARLRLDNVFERKQREVVARLDAIL- 507
V LR + K+++ + + D+ +++ R L + E + +D IL
Sbjct: 653 NDRVVCLRKSQRKFEAPNVLTFDVQSHTARPRPMFLNRPLIAILEHLGEQDT--MDRILE 710
Query: 508 TDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFH-------------- 553
+ +QEA + SS + + ++ G + + +
Sbjct: 711 LQHADIQEAQGVRSSFRDAAKMLQVHGLGASFHLTSLFGNLAKELNMRVWTRESDDGWQN 770
Query: 554 -----------ASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ-------------- 588
L EL+ RA I + +MG DE L G+
Sbjct: 771 EVVIDALRCISTHALRELKYRAHIRVPGSYTLMGVSDEWNCLRPGEIFATVRDIRNGLDK 830
Query: 589 ---GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEI 645
G + V + P +HPGD++V+ AV P L H+ + V+F +G+R + G D DG+
Sbjct: 831 PIVGRVAVTRSPQIHPGDIQVVTAVRRPELEHLTNVVVFSTQGDRALPSFLGGGDLDGDD 890
Query: 646 YFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVY 705
+ + D P +P +Y P K IEDV ++ +Y D +G I H+ +
Sbjct: 891 FNLILDEALFPTANSEPGSYVSLPIKETTHPCGIEDVVDFVFNYFETDLVGRIAIMHLRF 950
Query: 706 AYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAA---TIPSRLRVKIYPDFMEKQ------ 756
A E S C L +L++ DF KTG +P +I PDF+ ++
Sbjct: 951 ADLEDPGCAS--CMTLAELAAQAVDFPKTGTPVDFKLLPRLPDKEIKPDFLAREGENPHK 1008
Query: 757 DKTWYESQHIVGNLYREV 774
++ +YESQ ++G L+R V
Sbjct: 1009 NERFYESQKLLGELFRRV 1026
>gi|440493516|gb|ELQ75976.1| RNA-directed RNA polymerase QDE-1, partial [Trachipleistophora
hominis]
Length = 714
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/186 (39%), Positives = 101/186 (54%), Gaps = 5/186 (2%)
Query: 589 GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFV 648
G +VAK PCLHPGD+R + V L H + ++F KG RP N CSGSD DG++YF+
Sbjct: 259 GNAIVAKNPCLHPGDIRKVHCVYKKELLHYKNVLVFSRKGTRPTFNMCSGSDLDGDLYFI 318
Query: 649 CWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYS 708
WD IP + P +Y + VT +D+ +F + D LG I NAH+V YS
Sbjct: 319 SWDKRLIPRNEHFPQSYQSSSYLSKEHIVT-QDMVNFFTRFAKEDELGKISNAHLV--YS 375
Query: 709 EPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVG 768
+ + L L S+ DF KTG A +P L ++YPDFME+ Y+S ++G
Sbjct: 376 DIHGITDPQALKLAYLFSMGVDFPKTGYIARLPQNLEPEVYPDFMERGRS--YKSGRVMG 433
Query: 769 NLYREV 774
LYR V
Sbjct: 434 VLYRRV 439
>gi|409044334|gb|EKM53816.1| hypothetical protein PHACADRAFT_125775, partial [Phanerochaete
carnosa HHB-10118-sp]
Length = 1091
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 132/538 (24%), Positives = 225/538 (41%), Gaps = 105/538 (19%)
Query: 289 NRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIV 348
NR+++S D+ F+ +SF KL SP+++ E ++ + G+
Sbjct: 52 NRILQS--DDATKFVLVSF-----EKLRFPDTSPRVAQ----------EYMIRFFKAGLF 94
Query: 349 IGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFA 408
+ ++ SNSQ R + ++ + + + R+GDF +I + +K A R+G F+
Sbjct: 95 LNGTQYRFYGHSNSQLRSRSCFLRQAENDEELDALIYRLGDFLKITSASKRAKRIGLLFS 154
Query: 409 SSREALHVDSNI----------------------GKISAELAETVAKKCGYAI----YTP 442
++ +D N+ G IS + A+ ++K YTP
Sbjct: 155 EAK----IDWNLQPRWTKDIDDIVVNGETFSDGCGLISVKFAKQLSKHKRILYHGRPYTP 210
Query: 443 SAFQIRYGGYKVTL------RNNMFKYKSESTSLDILANSKYQREGVARLRLDNVFERKQ 496
+ +QIRY GYK L + ++ N + V F R
Sbjct: 211 TVYQIRYRGYKGVLAIDPRLTTDHVHFRKSQKKFTATQNDTF---SVVDHSTPFAFARLN 267
Query: 497 REVVARL-------DAILTDSSKVQE-----------ALELMSSAENTNVLKELLNCGYK 538
++V L DA L E A +L+ +A + + LL G
Sbjct: 268 NDIVVLLASLGISSDAFLAKQRGYHEWLQKASDGWEAAFDLLCAANRYAMAERLLLEGI- 326
Query: 539 PDAEPFLSMMPQTFHASNLLELRT----RARIFIQNGQAMMGCLDEKGTLEYGQ------ 588
D++P + + S L +R R R + + + G D L G+
Sbjct: 327 -DSKPVRQEI-RALQNSELASIRKNDRLRVRTLVPKSRFLFGVCDPYSVLREGEVHVRIM 384
Query: 589 ----GL-------MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECS 637
G+ ++V + PCL+PGD LRAV PAL H++DC++F ++G R + S
Sbjct: 385 IPRKGITTLTNVDVLVVRNPCLYPGDCLKLRAVHHPALDHLIDCLVFASRGRRAAPSMSS 444
Query: 638 GSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGI 697
G D DG+ + V WD D +P Q Y PE++ A+ + +D+ ++FA Y + ++G
Sbjct: 445 GGDLDGDKFTVIWDPDLVPRKVAQSYDYPAPPERLNAK-IARQDLAKHFAAY-NSITMGR 502
Query: 698 ICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEK 755
+ H + P AMS C +L L S+ D G + IP RL VK+ + M++
Sbjct: 503 VAALHQKWIRLSPAGAMSAECQELNALYSLAVD----GGSIKIPERL-VKVPQNVMQE 555
>gi|67537240|ref|XP_662394.1| hypothetical protein AN4790.2 [Aspergillus nidulans FGSC A4]
gi|40741170|gb|EAA60360.1| hypothetical protein AN4790.2 [Aspergillus nidulans FGSC A4]
Length = 854
Score = 122 bits (307), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 114/416 (27%), Positives = 181/416 (43%), Gaps = 112/416 (26%)
Query: 287 LSNRVVRSYPDEIDNFLRLSFVD-EDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRN 345
+SN V+R Y + DNFLR+ F D + +G++++TV +T E TRI +R L+ N
Sbjct: 233 ISNCVIRRYANLADNFLRVRFTDAKHIGRIHATV-----DNTMDEVLTRI-KRALA---N 283
Query: 346 GIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARL-- 403
GI IG ++E LAF NS +T R I T + ++
Sbjct: 284 GITIGSTRYEFLAFGNSSSCFSTT---------------------RAISGCTAHVKKIDD 322
Query: 404 --GQSFASSREALHVDSNIGKISAELAETVAKKCGYAIYT---PSAFQIRYGGYK----- 453
G + S +G+IS LA+ V + T PSA+Q R G K
Sbjct: 323 IEGNGYIFS-------DGVGRISKFLAQIVKSELKIKTPTKEPPSAYQFRLVGCKGMLIV 375
Query: 454 --------VTLRNNMFKYKSESTSLDILANSKYQREGVARLRL---------DNVFERKQ 496
V +R + FK+ + S L+I+ S++ + R + D VF K
Sbjct: 376 FPQARPQEVHIRKSQFKFAALSQGLEIIRWSQFTVASLNRQLILVLSTLGITDKVFHLKL 435
Query: 497 REVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASN 556
+ ++ LD EA+E S + ++L++ ++ P+ +P+
Sbjct: 436 KTMLRNLD----------EAME--SDPKAAHLLRKYVD----PNQVTLTIYLPK------ 473
Query: 557 LLELRTRARIFIQNGQAMMGCLDEKGTLEYGQGLMVVAKKPCLHPGDMRVLRAVDVPALH 616
NG+ E +G+ ++A+ P LHPG +RV+RAV+ P LH
Sbjct: 474 -------------NGEKY----------EIIEGICILARNPSLHPGGIRVVRAVNAPGLH 510
Query: 617 HMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKI 672
H+ D V+ P G+R + CSGSD DG+ + V WD D +P F+ P +I
Sbjct: 511 HLKDIVVLPRTGDRDIASMCSGSDLDGDDFLVIWDQDLLPDDWFRSFQLRQLPTRI 566
>gi|259482364|tpe|CBF76776.1| TPA: RNA-directed RNA polymerase (Sad-1), putative (AFU_orthologue;
AFUA_3G06790) [Aspergillus nidulans FGSC A4]
Length = 869
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 114/416 (27%), Positives = 181/416 (43%), Gaps = 112/416 (26%)
Query: 287 LSNRVVRSYPDEIDNFLRLSFVD-EDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRN 345
+SN V+R Y + DNFLR+ F D + +G++++TV +T E TRI +R L+ N
Sbjct: 248 ISNCVIRRYANLADNFLRVRFTDAKHIGRIHATV-----DNTMDEVLTRI-KRALA---N 298
Query: 346 GIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARL-- 403
GI IG ++E LAF NS +T R I T + ++
Sbjct: 299 GITIGSTRYEFLAFGNSSSCFSTT---------------------RAISGCTAHVKKIDD 337
Query: 404 --GQSFASSREALHVDSNIGKISAELAETVAKKCGYAIYT---PSAFQIRYGGYK----- 453
G + S +G+IS LA+ V + T PSA+Q R G K
Sbjct: 338 IEGNGYIFS-------DGVGRISKFLAQIVKSELKIKTPTKEPPSAYQFRLVGCKGMLIV 390
Query: 454 --------VTLRNNMFKYKSESTSLDILANSKYQREGVARLRL---------DNVFERKQ 496
V +R + FK+ + S L+I+ S++ + R + D VF K
Sbjct: 391 FPQARPQEVHIRKSQFKFAALSQGLEIIRWSQFTVASLNRQLILVLSTLGITDKVFHLKL 450
Query: 497 REVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASN 556
+ ++ LD EA+E S + ++L++ ++ P+ +P+
Sbjct: 451 KTMLRNLD----------EAME--SDPKAAHLLRKYVD----PNQVTLTIYLPK------ 488
Query: 557 LLELRTRARIFIQNGQAMMGCLDEKGTLEYGQGLMVVAKKPCLHPGDMRVLRAVDVPALH 616
NG+ E +G+ ++A+ P LHPG +RV+RAV+ P LH
Sbjct: 489 -------------NGEKY----------EIIEGICILARNPSLHPGGIRVVRAVNAPGLH 525
Query: 617 HMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKI 672
H+ D V+ P G+R + CSGSD DG+ + V WD D +P F+ P +I
Sbjct: 526 HLKDIVVLPRTGDRDIASMCSGSDLDGDDFLVIWDQDLLPDDWFRSFQLRQLPTRI 581
>gi|218188371|gb|EEC70798.1| hypothetical protein OsI_02249 [Oryza sativa Indica Group]
Length = 307
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 121/220 (55%), Gaps = 5/220 (2%)
Query: 665 YTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKL 724
Y+P K L R V+ D+ ++F +++++LG ICNAHVV+A AM +C L +L
Sbjct: 3 YSPPEAKQLPRQVSQHDIIDFFLKNMISENLGRICNAHVVHADLSEYGAMDEKCIHLAEL 62
Query: 725 SSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTI 784
++ DF KTG A +P L+ K+YPDFM K+D Y+S+ I+G LYR + +
Sbjct: 63 AATAVDFPKTGKLAIMPPHLKPKVYPDFMGKEDGQSYKSEKILGRLYRSIQEASNGDVVS 122
Query: 785 KSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRC 844
+ + YD D+EV G + ++ + YD +L L+ Y ++TEAE+++
Sbjct: 123 QEVCTPNDLP-YDIDLEVPGASDFLAS--AWQCKCSYDAQLSALLSQYRVRTEAELVTGH 179
Query: 845 IMEMAKSFDKKR-DL-EAISFSVRSLRKEARAWFNKKKND 882
I + K+ KK+ D+ + + + +LRKE ++ F +D
Sbjct: 180 ITSLVKNSSKKQGDIKDRLKTAYSALRKEFKSTFESIASD 219
>gi|302690464|ref|XP_003034911.1| hypothetical protein SCHCODRAFT_255915 [Schizophyllum commune H4-8]
gi|300108607|gb|EFJ00009.1| hypothetical protein SCHCODRAFT_255915 [Schizophyllum commune H4-8]
Length = 1237
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 157/710 (22%), Positives = 278/710 (39%), Gaps = 182/710 (25%)
Query: 232 CCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRV 291
C+D + L E H++ G F I+ TP++ GP SNR+
Sbjct: 407 ACFDRIMKLFEFAELHITPGYFQCC-------------HIIFTPTRTVLEGPYPVQSNRI 453
Query: 292 VRSYPDEIDNFLRLSFVDED-LGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIG 350
+R YP +F+R+ F DED L + + +G + R ERV L NG +G
Sbjct: 454 IRRYPGYEHHFIRVEFRDEDRLAYRWD-------RTVDGSQFVR--ERVGGILANGFKLG 504
Query: 351 DKKFETLAFSNSQERENTLWMFAS--RPEL----TAADIRERMGDFREIKNVTKYAARLG 404
+ F LA+S S RE+++W EL TA IR+ +G F E + YAARL
Sbjct: 505 GRSFVFLAYSTSALREHSVWYLNEFYHEELGYCITADYIRDSIGHFPEDSKL--YAARLA 562
Query: 405 QSFASSREALHVDSN--------------------------IGKISAELAETV------- 431
Q+F ++ ++ + + +G IS L + +
Sbjct: 563 QAFTATEPSVKIRRDEWEEMEDLSPPPPPGKRVSPYLFTDGVGTISRSLGDRIWGKLISE 622
Query: 432 ----------AKKCGYAIYTPSAFQIRYGGYK-----------------VTLRNNMFKYK 464
A +CG + +IR+ GYK + LR +M K+
Sbjct: 623 RGGDLTQAVAAGRCGSI-----SGRIRFLGYKGMVAVDEEMDKDNTGIHMRLRPSMRKFD 677
Query: 465 SESTSL---DI-------LANSKYQREGVARLRLDNV------FERKQREVVARLDAILT 508
S+ + DI N+ + + + + L+N+ FE+ Q+ VA ++ I
Sbjct: 678 SKEEDMWEADIEIARHFAYPNNMFTNKALVTV-LENLGVGCDQFEKLQQSAVASVERIHD 736
Query: 509 DSSKVQEALE---LMSSAENTNVLKELLNCGYKPDA--------------EPFLSMMPQT 551
D ++ L L + ++L + G + PF + +
Sbjct: 737 DIDAWRDVLRSNNLCRTFRLAHILDNFVAMGLEMKGTPSRPRRAPLPGFDSPFFKKIREV 796
Query: 552 FHASNLLELRTRARIFIQNGQAMMGCLDEK--------------GTLE------------ 585
+ L +++ AR I + ++G DE G E
Sbjct: 797 ARMAILRDIKHDARFGIPDSYKLVGIADEGPAYIKAGKENVYCLGDREIYACVQRTEGED 856
Query: 586 --YGQGLMVVAKKPCLHPGDMRVLRAVDVP------ALHHMVDCVLFPAKGERPHTNECS 637
+ +G ++++ P H GD++ + A+ P + + + V+ P+ G+R + S
Sbjct: 857 PVWLEGNCIISRSPVTHVGDVQRVHAIGRPPADMLSSFGKLKNLVVLPSVGDRSLCSMLS 916
Query: 638 GSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGI 697
G D DG++Y + D + Q +P + P L R T++D+ + +YI +D +G+
Sbjct: 917 GGDLDGDLYDIIMCEDLLYSQQEKPLDFDPGETFQLNRPATVDDICNFIVEYINSDVVGL 976
Query: 698 ICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPS----RLRVKIYPDF- 752
+ + +V A + C + KL S D+ K G+ + + R ++ PD+
Sbjct: 977 LSDRLLVIADQSKNGIFDEDCVKIAKLCSQAVDYPKQGIPVDLENGNLPRPLMRQKPDWH 1036
Query: 753 ----MEKQDKTWYESQHIVGNLY-----REVNGI----APSTTTIKSFAK 789
+ +D +Y S +G LY REV + A STT + + K
Sbjct: 1037 AAEVIRPRDNDYYRSDKALGRLYRNIQIREVEALSEEEAASTTGVNAITK 1086
>gi|406693965|gb|EKC97304.1| hypothetical protein A1Q2_08384 [Trichosporon asahii var. asahii
CBS 8904]
Length = 945
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 120/482 (24%), Positives = 210/482 (43%), Gaps = 53/482 (10%)
Query: 261 LDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLG-KLYSTV 319
LD + V LVTP+++ P + S +R++ D FLR+ F+DE+ G ++ TV
Sbjct: 278 LDENSVVVYHCLVTPTRLVLLPPGVETSTDAIRNHLSFSDRFLRVEFIDEEDGFQVNPTV 337
Query: 320 L-SPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRP-- 376
L + Q+ G RV + NG+ I + + LA+ + R+ + W A P
Sbjct: 338 LEADQMEPAEG-----TVARVRRAMMNGLNIAGRHYVFLAYGATSARQQSCWFLAEDPAK 392
Query: 377 ELTAADIRERMG-DFREIKNVTKYAARLGQSF-----ASSREALHVDSNIGK--ISA-EL 427
LT ++ +G D V ++ +++ A +E + +S+ G+ ISA E
Sbjct: 393 NLTVESVKRNLGLDLLRDTTVARFVSKMAIILPDILHADQQEKGYCESDAGRTEISAVED 452
Query: 428 AETVAKKCGYAIYTPSAFQIRYGGYKVTLRNNMFKYKSESTSLDILANSKYQREGVARLR 487
E++ + S + R G + N+ ++K S + + GV
Sbjct: 453 KESMENISEEVYFRQSQVKYRTGSKTMAYGLNIVEFKRAHLSRQAVVIMNHL--GVPDAV 510
Query: 488 LDNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSM 547
+++F RE L T + ++E L L+S + V EL + G+K D P L
Sbjct: 511 FESLFILAMREARGLLKRSAT-AGLLKEDLSLVSQHTHFPV-SELYSFGFKTD--PMLLD 566
Query: 548 MPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ------------------G 589
+ + L + R AR+ + +MG DE L + G
Sbjct: 567 ICRATAVRLLSDYRHNARLQVDQSVKLMGIADELNVLSEHEVFCQYDDPDSSDGPNVVLG 626
Query: 590 LMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVC 649
+ + P LHPGD++++ AVD P LHH+ + ++F +G+ S + G+ Y +
Sbjct: 627 ACAIMRDPVLHPGDIQLVHAVDRPELHHLRNVIVFSVQGQ-----PLSRGNLAGDQYSLI 681
Query: 650 WDHDRIPPLQFQPTAYTPAPEKILAR--DVTIEDVEEYFADYIVNDSLGII---CNAHVV 704
WD IPP Q +P++YTP + + D + DV A+ + + I+ C+AH+
Sbjct: 682 WDPVLIPPEQVEPSSYTPPEPATVPKVADKHLRDVGSERAE-LTQKLMAIVEQLCDAHLA 740
Query: 705 YA 706
A
Sbjct: 741 IA 742
>gi|167405748|gb|ABZ79701.1| RNA-dependent RNA polymerase [Solanum lycopersicum]
Length = 163
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/152 (48%), Positives = 95/152 (62%), Gaps = 5/152 (3%)
Query: 15 SPKAVKEFLEEHTGEGTVSGVEVGQNKG-SRAHAIVEFTTVEAADFIKCLARERLSYGNS 73
S + V FLE++TG GT +EV Q+KG SRA A V+F +AD I LA RL +G+S
Sbjct: 2 SAEVVLSFLEKYTGYGTSCALEVKQSKGGSRAFAKVQFADNISADKIITLANNRLYFGSS 61
Query: 74 FLKASSAKRRTPHFAKRTPHYKLGGDLKLNFGCQISKDKFSVFWSQENVSVKLCSDLRKF 133
+LKA K R ++ G + LNFGCQIS DKF+V S E VS++ L+KF
Sbjct: 62 YLKAWEMKTDIVQL--RAYVDQMDG-ITLNFGCQISDDKFAVLGSTE-VSIQFGIGLKKF 117
Query: 134 GFFLSYESVDYKLELSNESIWQIELHRPSGHS 165
FFLS S DYKL+LS E+IWQ+ LHRP G +
Sbjct: 118 FFFLSSGSADYKLQLSYENIWQVVLHRPYGQN 149
>gi|170117206|ref|XP_001889791.1| RNA-directed RNA polymerase [Laccaria bicolor S238N-H82]
gi|164635257|gb|EDQ99567.1| RNA-directed RNA polymerase [Laccaria bicolor S238N-H82]
Length = 1690
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 133/528 (25%), Positives = 218/528 (41%), Gaps = 96/528 (18%)
Query: 288 SNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGI 347
SNRV+ S D+ F+ LSF GK + P +GE R+ L+ G
Sbjct: 58 SNRVIHS--DDPSKFILLSF-----GKEFRFPDHP--PRVSGEYIARL-------LKAGF 101
Query: 348 VIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARLGQSF 407
+ D ++ SNSQ R + ++ + + D ++GDF I N+ K A R+G F
Sbjct: 102 FLNDIQYRFYHHSNSQLRGRSCFLRQANNDKELDDRIYQLGDFGRIMNIAKRAKRIGLLF 161
Query: 408 ASSREALHVD------------------SNIGKISAEL--AETVAKKCGY--AIYTPSAF 445
+S++ +D G IS L A + AK+ + YTP+ F
Sbjct: 162 SSAQIDYRLDPKYIADIPDIQDGDELFSDGCGLISKRLSIALSKAKRITFRNVRYTPTVF 221
Query: 446 QIRYGGYKVTLR---------NNMFKYKSESTSLDILANSKYQREGVARLRLDNVFERKQ 496
QIRY GYK L ++ +++ + + G +R F R
Sbjct: 222 QIRYLGYKGVLMLHPQLDAEGKHLAQFRKSMKKFTTTTDHTFSVVGHSR---PYTFGRLN 278
Query: 497 REVVARLDAILTDSSKVQEALE-----LMSSAENTNVLKELLNC--GYKPDAEPFLSMM- 548
+++ L + + K+ + L ++ E+ + L+C Y + L+ +
Sbjct: 279 NDIIVLLSCLGVTNEKLLNKQDEYFQWLRNATEDPTAAVDFLSCIDQYPLAGKVLLNGIN 338
Query: 549 -PQTFHASNLLEL-----------RTRARIFIQNGQAMMGCLDEKGTLEYGQ-------- 588
P L+L + ++R+ I+ + + G D L+ G+
Sbjct: 339 DPDVAKEIRRLQLGEIARYTDEREKFKSRMIIRESRRLFGVCDPFQVLKEGEVHIRIMAS 398
Query: 589 ---------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPA---KGERPHTNEC 636
G +++ + PCLHPGD LRAV L H+VDC++F + G +
Sbjct: 399 RKGPSTPIHGDVLIVRNPCLHPGDCLKLRAVHNDKLSHLVDCLVFASVARPGHHAAPSMS 458
Query: 637 SGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLG 696
SG D DG+ + VCWD D +PP + Y P ++ +++ VT ED+ +FA Y L
Sbjct: 459 SGGDLDGDEFLVCWDKDLVPPRISESYDY-PGNKERISKKVTREDLAVHFASYNAA-GLA 516
Query: 697 IICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRL 744
+ H +A P A+S +C +L L S D G IP RL
Sbjct: 517 RVSALHNKWARYSPQGALSVQCQELNALHSQSVD----GAGIKIPDRL 560
>gi|241633128|ref|XP_002410399.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
gi|215503416|gb|EEC12910.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
Length = 756
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 109/381 (28%), Positives = 174/381 (45%), Gaps = 71/381 (18%)
Query: 240 LREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEI 299
L E +RK + P P G V ++ VTPS V+F P + NRV+R + E
Sbjct: 391 LPELFRKFCLAYVPPKVPR-----GSCLVRRVFVTPSCVFFLPPNVHSENRVLRCFDAEY 445
Query: 300 DNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAF 359
LR+SF D++L L +++ + ++ + V LR GI +G ++F+ LA
Sbjct: 446 A--LRVSFRDDNLQHLSHSLM------FHRQKEEMVDTIVAKFLRTGIEVGGRQFKFLAS 497
Query: 360 SNSQERENTLWMFA-SRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHV-- 416
S SQ R++ +W++A R TA IR MGDF I NV K AR+GQ F+S+ E++ V
Sbjct: 498 SCSQLRDHGVWLYAMDRQGFTAESIRRWMGDFSAIPNVAKKMARMGQCFSSTEESVKVPL 557
Query: 417 -------------------------DSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGG 451
IG IS L + V KK A PSA QIRY G
Sbjct: 558 HGGNMEEVPDVVGGVHPVSGKEFTFSDGIGMISTSLMQKVCKKLDLA-EVPSAIQIRYAG 616
Query: 452 Y-------------KVTLRNNMFKYK-SESTSLDILANSKYQREGVARLRLDNVFER--- 494
Y K+ LR++M K+ S S SL+++ S + + R L + E+
Sbjct: 617 YKGMLCVNPELRGDKLVLRDSMRKFSCSNSDSLEVIKVSAPRTVYLNRF-LITILEQLGV 675
Query: 495 --------KQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLS 546
+Q+ ++ DA++ +S+ ++ L + T L G+ +PF+
Sbjct: 676 PSRVFLCLQQKMMLTFADALVCESTALR---VLCTYVGGTLPFLRLQQNGFCLARDPFVR 732
Query: 547 MMPQTFHASNLLELRTRARIF 567
++ T + S + + R R ++F
Sbjct: 733 LLLYTVYRSTMGKRRCRPQLF 753
>gi|406695038|gb|EKC98353.1| RNA-dependent RNA polymerase [Trichosporon asahii var. asahii CBS
8904]
Length = 1018
Score = 119 bits (298), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 121/455 (26%), Positives = 201/455 (44%), Gaps = 94/455 (20%)
Query: 251 GQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDE 310
G+FP S + + + + VTP++V P+ SN V R Y D++D +R+ F DE
Sbjct: 368 GEFPVSRHI------VMIRTVTVTPTRVLVGPPQPETSNSVTRRYSDKLDAIIRVHFTDE 421
Query: 311 DLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLW 370
+L + E+ + RV L+ GI + ++ +A S SQ++++ +W
Sbjct: 422 G-ERLNVQKFTKPADDACPEKG--LMARVRRALQYGIEVAGCRYYPVASSGSQQKDHNMW 478
Query: 371 MF----ASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSRE-ALHVD-SNIGKI- 423
RPEL+ MG +E + V K+AARLG F++SR AL V S++ +
Sbjct: 479 FIDHTVIDRPELS-----RWMGQVKE-QVVAKHAARLGLPFSASRAVALKVTVSDLADVF 532
Query: 424 -------------------SAELAETVAKKCGYAIYTPSAFQIRYGGYK----------- 453
A + +K G A PSA Q R GG K
Sbjct: 533 RNDHCFTDGCGVAGIDVMRQAARSMNNKRKTGEA---PSALQFRLGGAKGVLAYWPGMAG 589
Query: 454 ---VTLRNNMFKYKSESTSLDILANSKYQREGVARLRL---------DNVFERKQREVVA 501
+ +R + K++S L+++ +KYQ + R + D +FE+ E
Sbjct: 590 NDEILMRPSQTKFESRLKELNVVRIAKYQAAFLNRQFINIMSACGVPDALFEQLFVEATQ 649
Query: 502 RLD-----AILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASN 556
++ A+L D +K + L L ++ ++++ G+ + P + + + A
Sbjct: 650 AIEGLPDRAVLRDLTK--DDLVLFQQYTEFPMV-QVIDAGFARN--PMIQDLARLVEARA 704
Query: 557 LLELRTRARIFIQNGQAMMGCLDEKGTLEYGQGLM-----------------VVAKKPCL 599
L +L+ RAR+ + G ++G DE G L+ G+ + VV + P L
Sbjct: 705 LQDLKWRARVKLDMGVYLIGVADETGLLKEGEVFVQYQVTENDEPVVVTGAVVVCRAPAL 764
Query: 600 HPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTN 634
HPGD+R RAVD P L H+ + V+F KG RP N
Sbjct: 765 HPGDVRTARAVDHPQLRHLKNVVVFSIKGARPLPN 799
>gi|347841951|emb|CCD56523.1| hypothetical protein [Botryotinia fuckeliana]
Length = 717
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 119/254 (46%), Gaps = 43/254 (16%)
Query: 267 YVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDN--FLRLSFVDEDL-GKLYSTVLSPQ 323
+ K VTP+ + F P + +NRV+R Y E FLR+ F DE G++ S
Sbjct: 446 FSRKATVTPTSILFNSPTVETTNRVLRHYSKENQEGRFLRVQFTDEKFEGRINSCA---- 501
Query: 324 ISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADI 383
+ R I+ RV + NGI IGD+ +E LAF NSQ REN + F L+ DI
Sbjct: 502 ----DKIRNDAIFTRVFRVISNGIRIGDRHYEFLAFGNSQFRENGAYFFCPSANLSCNDI 557
Query: 384 RERMGDFREIKNVTKYAARLGQSFASSREALHVDS------------------NIGKISA 425
R+ MG F I V KYAARLGQ F+++R + + +GKIS
Sbjct: 558 RQWMGTFSHINVVAKYAARLGQCFSTTRAIKGLSAPDIVKIPDIGRGRYCFTDGVGKISP 617
Query: 426 ELAETVAKKCGYAI-YTPSAFQIRYGGYK-------------VTLRNNMFKYKSESTSLD 471
LA+ +A + + PSAFQ R GG K V +R + K+ + L+
Sbjct: 618 YLAQMIASELKLRVDLAPSAFQFRLGGCKGILVVSPDAKDNEVHIRKSQQKFTAAYNGLE 677
Query: 472 ILANSKYQREGVAR 485
I+ S++ + R
Sbjct: 678 IIRCSQFSSATLNR 691
>gi|397614211|gb|EJK62661.1| hypothetical protein THAOC_16717 [Thalassiosira oceanica]
Length = 540
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 99/374 (26%), Positives = 155/374 (41%), Gaps = 96/374 (25%)
Query: 570 NGQAMMGCLDEKGTLEYGQ---------------------GLMVVAKKPCLHPGDMRVLR 608
N + +MG +DE G LE Q G ++VAK P +HPGD+R+L
Sbjct: 8 NSEVLMGGIDETGLLEENQIFIQVSKHTKENNKPAYEVITGRVMVAKHPVIHPGDLRMLE 67
Query: 609 AVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAY--- 665
AVD+P L + + VLF G RP TN SGSD DG+ + +CWD P + +Y
Sbjct: 68 AVDLPELRGVKNVVLFSQHGHRPVTNMMSGSDLDGDEFAICWDRRLFLPKTVEAMSYDSH 127
Query: 666 TPAPEKILARDV--------TIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNR 717
+P +L V T E + +F ++ ND+LG I + +A + A +
Sbjct: 128 SPDETGLLPLSVLEEEFGVTTNEALVRHFINHAKNDNLGKISMLWLDHAI-DKGSASCSE 186
Query: 718 CPDLVKLSSIVGDFSKTGVAATIPSRL-------------RVKIYPDF------------ 752
C +L L SI DF K+ + A +P RL + P F
Sbjct: 187 CLELAALHSISVDFPKSSIPAKLPDRLVLGSTFPRAHWREKAGGSPSFHCRSIVGRLYDN 246
Query: 753 -------MEKQDKTWYE-----SQHIVGNLYREVNG------------------IAPSTT 782
M QD++ + + + YR+ NG PS
Sbjct: 247 VLHELKVMSDQDESSFNWGGGSDKDAMAGRYRDRNGQIIMQGNEEKILRAKKSLFDPSLV 306
Query: 783 TIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLS 842
++ +G Q YD + F + R +++++L LM+ Y IK+E E+++
Sbjct: 307 HRLGWSMDGKSQDYD-------LHRCLLDF-ALEQRNDFEDELVELMNQYHIKSEGEVVT 358
Query: 843 RCIMEMAKSFDKKR 856
C++E K +KR
Sbjct: 359 GCVLEYHKLHQRKR 372
>gi|401885409|gb|EJT49528.1| hypothetical protein A1Q1_01432 [Trichosporon asahii var. asahii
CBS 2479]
Length = 1000
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 117/444 (26%), Positives = 193/444 (43%), Gaps = 83/444 (18%)
Query: 251 GQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDE 310
G+FP S + + + + VTP++V P+ SN V R Y D++D +R+ F DE
Sbjct: 368 GEFPVSRHI------VMIRTVTVTPTRVLVGPPQPETSNSVTRRYSDKLDAIIRVHFTDE 421
Query: 311 DLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLW 370
+L + E+ + RV L+ GI + ++ +A S SQ++++ +W
Sbjct: 422 G-ERLNVQKFTKPADDACPEKG--LMARVRRALQYGIEVAGCRYYPVASSGSQQKDHNMW 478
Query: 371 MF----ASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASS-----REALHVDSNIG 421
RPEL+ MG +E + V K+AARLG S R G
Sbjct: 479 FIDHTVIDRPELS-----RWMGQVKE-QVVAKHAARLGLVTVSDLADVFRNGHCFTDGCG 532
Query: 422 KISAELAETVAK------KCGYAIYTPSAFQIRYGGYK--------------VTLRNNMF 461
++ A+ K G A PSA Q R GG K + +R +
Sbjct: 533 VAGIDVMRQAARSMNNKRKTGEA---PSALQFRLGGAKGVLAYWPGMAGNDEILMRPSQT 589
Query: 462 KYKSESTSLDILANSKYQREGVARLRL---------DNVFERKQREVVARLD-----AIL 507
K++S L+++ +KYQ + R + D +FE+ E ++ A+L
Sbjct: 590 KFESRLKELNVVRIAKYQSAFLNRQFINIMSACGVPDALFEQLFVEATQAIEGLPERAVL 649
Query: 508 TDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIF 567
D +K + L L ++ ++++ G+ + P + + + A L +L+ RAR+
Sbjct: 650 RDLTK--DDLVLFQQYTEFPMV-QVIDAGFARN--PMIQDLARLVEARALQDLKWRARVK 704
Query: 568 IQNGQAMMGCLDEKGTLEYGQGLM-----------------VVAKKPCLHPGDMRVLRAV 610
+ G ++G DE G L+ G+ + VV + P LHPGD+R RAV
Sbjct: 705 LDMGVYLIGVADETGLLKEGEVFVQYQVTENDEPVVVTGAVVVCRAPALHPGDVRTARAV 764
Query: 611 DVPALHHMVDCVLFPAKGERPHTN 634
D P L H+ + V+F KG RP N
Sbjct: 765 DHPQLRHLKNVVVFSIKGARPLPN 788
>gi|400596582|gb|EJP64353.1| RNA dependent RNA polymerase [Beauveria bassiana ARSEF 2860]
Length = 590
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 122/249 (48%), Gaps = 53/249 (21%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
V K +TP+ + P + SNRV+R Y + D FLR+ F+ E + +
Sbjct: 300 VLKANITPTSLKLNLPNVESSNRVMRKYNNLHDRFLRVQFLSE--------------TES 345
Query: 328 NGERRTR-----IYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAAD 382
N + R +++R+L L GI IG++ +E LAF NSQ RE ++ F ++ D
Sbjct: 346 NRIAKDRYNNDDVWKRLLRALHKGIRIGERTYEFLAFGNSQLREGSVTFFCPTAHVSCDD 405
Query: 383 IRERMGDFREIKNVTKYAARLGQSFASSREA--------LHVD----------SNIGKIS 424
IR+ +G+F I+NV K+ AR+GQ F+++RE H+D +G IS
Sbjct: 406 IRKWLGNFDHIRNVAKFGARIGQCFSTTREVRGVRVPTIRHIDDIEAKGECFTDGVGIIS 465
Query: 425 AELAETVAKKCGYAIY-TPSAFQIRYGGYK---------------VTLRNNMFKYKSEST 468
A LA+ V + I PSAFQ R GG K V LR + K+ +E+
Sbjct: 466 ALLAQLVVDELELDIVGNPSAFQFRMGGAKGVLAVWPREYAKHMEVCLRKSQIKFSTEAN 525
Query: 469 SLDILANSK 477
+L+I+ +K
Sbjct: 526 TLEIIKCAK 534
>gi|395327643|gb|EJF60041.1| RdRP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 734
Score = 113 bits (283), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 121/476 (25%), Positives = 196/476 (41%), Gaps = 100/476 (21%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
+ K+LV+ S C +++SN+ +S+P+ R + + +D + + S
Sbjct: 2 LQKVLVSISTA-VCQDGVNISNKEQQSHPET-----RATRLVQDTTRFL-------LVSV 48
Query: 328 NGERRTRIYERVLST-LRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRER 386
N + R + L+ + GI + L ++ SQ + L F T + E
Sbjct: 49 NKKARDSTLRQTLARWIYEGIEHNGTVYRFLGYTESQVKAGKLMFFHEGEGWTVERMLES 108
Query: 387 MGDFREI---KNVTKYAARLGQSFASSREALHV-------------------DSNIGKIS 424
GD + KYAARLG SF+S+ ++L + G I
Sbjct: 109 FGDLPGVYLKSGYGKYAARLGLSFSSTVQSLDIPLECAIEIPDLTAPDGSLHSDGCGMIR 168
Query: 425 AELAETVAKKCGYAIYTP--SAFQIRYGG---------------------------YKVT 455
A A+ C P + FQ+R GG Y +
Sbjct: 169 DSFA---AQLCARHNLPPDTTVFQVRRGGIKGLLVRYPDNEFDVRCRTHSRTRGGHYMIA 225
Query: 456 LRNNMFKYKSESTSLDILANSKYQREGVARLRLDNV---------FERKQREVVARLD-- 504
R +MFKY T L++ N+ ARL + + F QR V+ +LD
Sbjct: 226 YRPSMFKYAGGPTCLEL--NNHNSPSASARLNVQFMALLLTLGVPFAIFQRLVLDQLDLI 283
Query: 505 -AILTDSSKVQEAL--ELMSSAEN--TNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLE 559
+ILTD K + + EL ++AE+ L +L + +EP++ +TF +
Sbjct: 284 GSILTDREKALQYVKGELDAAAEDDFAQGLYAML-LARQDLSEPYVRHKLETFQRKQYIT 342
Query: 560 LRTRARIFIQNGQAMMGCLDEKGTLEYGQ---------GLMV----VAKKPCLHPGDMRV 606
LR + + I + + G +DE G L + G++V V + P +PGD R
Sbjct: 343 LRNKMSLRIPDSAYLFGVVDEAGVLAPNEVHVNLPNRSGVLVRDVIVGRNPSYYPGDFRK 402
Query: 607 LRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQP 662
LRAVD P+L H +C++F + + +G D DG++YFVCWD IPP + P
Sbjct: 403 LRAVDHPSLRHHRNCIVFSSNAAHSIPDTIAGGDLDGDMYFVCWDPCLIPPREAPP 458
>gi|392569009|gb|EIW62183.1| RdRP-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 793
Score = 112 bits (281), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 106/395 (26%), Positives = 164/395 (41%), Gaps = 78/395 (19%)
Query: 343 LRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREI---KNVTKY 399
+R G+ I ++ L F+ SQ + L F T + GD + KY
Sbjct: 65 VREGVEINGVRYRFLGFTESQVKAGKLMFFREGHGWTVERLLASFGDLSAVYLKSGYGKY 124
Query: 400 AARLGQSFASSREALHVDSNIGKISAELA---------------ETVAKK-CGYAIYTP- 442
+ARLG SF+S+ E+L V +L ++ AKK C + P
Sbjct: 125 SARLGLSFSSTVESLDVPREAAHEMPDLKAPDGSLYTDGCGMIRDSFAKKLCTKHNFPPD 184
Query: 443 -SAFQIRYGGYK-----------------------VTLRNNMFKYKSESTSLDILANSKY 478
S FQ+R GG K + R +M+KY+ T L+I N+
Sbjct: 185 TSVFQVRRGGIKGLLVRYPDEKFERLGGTSSSSHLIAYRPSMYKYEDGPTMLEI--NNHN 242
Query: 479 QREGVARLRLD------------NVFERKQREVVARLDAILTDSSKVQEAL--ELMSSAE 524
A L + +VF+R ++ V + +I+TD K + EL + E
Sbjct: 243 LPPAPAHLNVQFTVLLLSLGVPVDVFKRLLQDQVDIIGSIVTDREKALHYIKGELDAGVE 302
Query: 525 ---NTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEK 581
N ++ LL +EP++ + LR + + I + + G +DE
Sbjct: 303 DGLNQSLYAMLL--AQHDLSEPYVRQRLLKYQEVQYESLRRKMNLRIMDSCYVFGVVDED 360
Query: 582 GTLEYGQ---------GLMV----VAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKG 628
L G+ G++V VA+ P HPGD+R LRAVD P L H +C++FP KG
Sbjct: 361 SVLAPGEVYVNLPARSGILVRDVVVARNPSYHPGDIRKLRAVDRPQLRHHRNCIVFPRKG 420
Query: 629 ERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPT 663
R + S D DG++YFV W+ IP + +P
Sbjct: 421 PRSVPDTISSGDLDGDMYFVAWEPTLIPSTEMKPV 455
>gi|105990550|gb|ABF81697.1| truncated MOP1 [Zea mays]
Length = 310
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 102/185 (55%), Gaps = 15/185 (8%)
Query: 208 VFSCNSDLNQDG-KHALEMLFHLRECCYDPVSWLREQ-----YRKHVSSGQFPTSPAVAL 261
+F DL+ D + E + L+ CY+P+ ++R + RK S + +
Sbjct: 132 LFKVLEDLSIDTLRRIFEKMSKLKSTCYEPLQFIRHEAHSMNMRKKALSNKRES------ 185
Query: 262 DGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLS 321
G L+ +I +TPSK+Y GPE +SN VV+ + + +F R++FVDED KL LS
Sbjct: 186 -GKLMRCYRIHITPSKIYCLGPEEEVSNYVVKYHSEYASDFARVTFVDEDWSKLSPNALS 244
Query: 322 PQISSTNGER--RTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELT 379
+ + +T +Y R+LS L+ G IG KK+E LAFS SQ R N++WMFAS LT
Sbjct: 245 ARTEQGFFSKPLKTGLYHRILSILKEGFCIGPKKYEFLAFSASQLRGNSVWMFASNSSLT 304
Query: 380 AADIR 384
A +IR
Sbjct: 305 AENIR 309
>gi|401885543|gb|EJT49653.1| hypothetical protein A1Q1_01210 [Trichosporon asahii var. asahii
CBS 2479]
Length = 957
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 115/463 (24%), Positives = 200/463 (43%), Gaps = 61/463 (13%)
Query: 284 EISLSNRVVRSYPDEIDNFLRLSFVDEDLG-KLYSTVL-SPQISSTNGERRTRIYERVLS 341
E+ S +R++ D FLR+ F+DE+ G ++ TVL + Q+ G RV
Sbjct: 313 EVETSTDAIRNHLSFSDRFLRVEFIDEEDGFQVNPTVLEADQMEPAEG-----TVARVRR 367
Query: 342 TLRNGIVIGDKKFETLAFSNSQERENTLWMFASRP--ELTAADIRERMG-DFREIKNVTK 398
+ NG+ I + + LA+ + R+ + W A P LT ++ +G D V +
Sbjct: 368 AMMNGLNIAGRHYVFLAYGATSARQQSCWFLAEDPAKNLTVESVKRNLGLDLLRDTTVAR 427
Query: 399 YAARLGQSF-----ASSREALHVDSNIGK--ISA-ELAETVAKKCGYAIYTPSAFQIRYG 450
+ +++ A +E + +S+ G+ ISA E E++ + S + R G
Sbjct: 428 FVSKMAIILPDILHADQQEKGYCESDAGRTEISAVEDKESMENVSEEVYFRQSQVKYRTG 487
Query: 451 GYKVTLRNNMFKYKSESTSLDILANSKYQREGVARLRLDNVFERKQREVVARLDAILTDS 510
+ N+ ++K S + + GV +++F RE L T +
Sbjct: 488 SKTMAYGLNIVEFKRAHLSRQAVVIMNHL--GVPDAVFESLFILAMREARGLLKRSAT-A 544
Query: 511 SKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQN 570
++E L L+S + V EL + G+K D P L + + L + R AR+ +
Sbjct: 545 GLLKEGLSLVSQHTHFPV-SELYSFGFKTD--PMLLDICRATAVRLLSDYRHNARLQVDQ 601
Query: 571 GQAMMGCLDEKGTLEYGQ------------------GLMVVAKKPCLHPGDMRVLRAVDV 612
+MG DE L + G + + P LHPGD++++ AVD
Sbjct: 602 SVKLMGIADELNVLSEHEVFCQYDDPDSSDGPNVVLGACAIMRDPVLHPGDIQLVHAVDR 661
Query: 613 PALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKI 672
P LHH+ + ++F +G+ S + G+ Y + WD IPP Q +P++YTP PE
Sbjct: 662 PELHHLRNVIVFSVQGQ-----PLSRGNLAGDQYSLIWDPVLIPPEQVEPSSYTP-PEPA 715
Query: 673 LARDVTIEDVEEYFADY------IVNDSLGII---CNAHVVYA 706
VT +++F D + + I+ C+AH+ A
Sbjct: 716 TVSKVT----DKHFPDVGSERAELTQKLMAIVEQLCDAHLAIA 754
>gi|402580635|gb|EJW74584.1| hypothetical protein WUBG_14509 [Wuchereria bancrofti]
Length = 168
Score = 108 bits (271), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 85/162 (52%), Gaps = 32/162 (19%)
Query: 574 MMGCLDEKGTLEYGQ------------------------GLMVVAKKPCLHPGDMRVLRA 609
M G +DE G L++GQ G +++ K PC+ GD+RV A
Sbjct: 1 MFGVMDETGQLQWGQIFVQCTRNIWLKTPSQSAAKIILKGKVMLTKNPCIVAGDVRVFEA 60
Query: 610 VDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRI-----PPLQFQPTA 664
VD+P LHH+VD V+FP G RPH +E +GSD DG+ Y V WD I PPL F T
Sbjct: 61 VDIPELHHLVDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQKLIFEHNEPPLDF--TK 118
Query: 665 YTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYA 706
T + I V +E + ++F +YI DS+G I NA +V A
Sbjct: 119 STSGNKIIDEAQVDLE-MRKFFVNYIKQDSIGSISNAFLVNA 159
>gi|405974296|gb|EKC38952.1| Putative RNA-dependent RNA polymerase SHL2 [Crassostrea gigas]
Length = 520
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 113/244 (46%), Gaps = 46/244 (18%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
V + ++TPS++ E NR++R Y D F+RL + DED K IS
Sbjct: 255 VRRAVLTPSRLILLSKEPVYFNRILRQY--NADYFIRLVYRDEDFEK---------ISGM 303
Query: 328 NGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERM 387
+ E + NG I D+ +E L SNSQ RE++ W F+S +TA IR+
Sbjct: 304 KYRGPQHLLEDMKQHFINGFTIYDRHYEFLGCSNSQLREHSFWFFSSYDGITAEFIRQSS 363
Query: 388 GDFREIKNVTKYAARLGQSFASSREALHVDSN-------------------IGKISAELA 428
GD + + V Y +R G F+SS L ++ + IGKIS LA
Sbjct: 364 GDLAKERCVASYVSRFGLCFSSSWNTLTIEEHEEVRFEKDVTRNGYCFTDGIGKISKRLA 423
Query: 429 ETVAKKCGYAIYTPSAFQIRYGGYK---------------VTLRNNMFKYKSESTSLDIL 473
VAK I PSAFQIRYGG K + +R +M K++S S SL++L
Sbjct: 424 AKVAKSMDLNI-VPSAFQIRYGGCKGVIAIDPSLGENREIIVIRESMKKFESNSKSLEVL 482
Query: 474 ANSK 477
S+
Sbjct: 483 QVSR 486
>gi|308469043|ref|XP_003096761.1| hypothetical protein CRE_23681 [Caenorhabditis remanei]
gi|308241452|gb|EFO85404.1| hypothetical protein CRE_23681 [Caenorhabditis remanei]
Length = 1721
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 94/361 (26%), Positives = 159/361 (44%), Gaps = 61/361 (16%)
Query: 536 GYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQN--GQAMMGCLDEKGTLEYGQ----- 588
G+ AEPF + + S++ L + +I I + G+++ G +DE G L+YGQ
Sbjct: 841 GFVLSAEPFFRSIVKAAIDSSMSRLLRKLQIPIPSHLGRSVFGVVDETGQLQYGQVFVRY 900
Query: 589 ------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGER 630
G ++V K P L GD+R+ AVD+P L+H+ D ++FP G R
Sbjct: 901 TENVDNKSPLKDFGTTLTGKVLVTKFPSLCEGDVRMYEAVDIPELYHLKDVIVFPQTGPR 960
Query: 631 PHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTP-APEKILARDVTIEDVEEYFADY 689
+E +GSD DG+ Y V WD + AY+ PE + ++A+Y
Sbjct: 961 SQPDEMAGSDLDGDEYAVIWDAELFFERNEPAFAYSSEKPEVPFTSSEMDHKMNLFYAEY 1020
Query: 690 IVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRL----- 744
+ + +G+ H+ S+ S+ C + +++ D+SK+GVA P L
Sbjct: 1021 MKQEDVGVTSTNHL--HQSDQFGINSDVCNAIAVKNAMALDYSKSGVA---PPPLTSEWT 1075
Query: 745 ------------RVKIYPDFMEKQ--DKTWYESQHIVGNLYRE---VNGIAPSTTTIKSF 787
R + PDF + Y+S ++G L+RE VN + S++ +
Sbjct: 1076 FNHVTGINEPPERSERRPDFAANRYNGNVSYQSSRLLGQLHRELRCVNDVLASSSAKQVP 1135
Query: 788 AKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIME 847
+ + + + V M Y+ +L ++MD +GI TEAE+ S C E
Sbjct: 1136 IEIDPLLVWKRWEKYAEVARVQM--------IRYNGQLRSIMDTFGINTEAEIFSGCYRE 1187
Query: 848 M 848
+
Sbjct: 1188 I 1188
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 102/240 (42%), Gaps = 63/240 (26%)
Query: 264 GLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQ 323
G V K+++TP+++ F PE ++NR + + +R +F D++ K+ L
Sbjct: 476 GYRKVRKVILTPTRIIFLAPETIMANRAINGADHDGTRIIRATFRDDNFQKMRYNQL--- 532
Query: 324 ISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAA-- 381
R + ER L+ LR+G VI + F LA SNSQ R+ + + A
Sbjct: 533 --------RDLLEERTLNHLRDGFVIYGRGFSYLASSNSQMRDGGAYFMERWNKTQLAEY 584
Query: 382 -------------------DIRERMGDFREIKNVTKYAARLGQSFASSRE---------- 412
D R+++G F + ++ K ARLGQ F +R
Sbjct: 585 KERYPRIRFPDPSFKPKIIDYRKKLGKFSKTGSIPKAMARLGQCFTQARRCDGVEICLQD 644
Query: 413 -ALHVDS-----------NIGKISAELA----ETVAKKCGYAIYTPSAFQIRYGGYKVTL 456
+ VD+ +G ISA LA ++++ KC PSA+QIR+ G K L
Sbjct: 645 YTMIVDAVGGAGQYKFTDGVGCISARLAAKICQSISIKC-----LPSAYQIRFRGLKGML 699
>gi|341877528|gb|EGT33463.1| hypothetical protein CAEBREN_18731 [Caenorhabditis brenneri]
Length = 1708
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 97/371 (26%), Positives = 173/371 (46%), Gaps = 62/371 (16%)
Query: 536 GYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQN--GQAMMGCLDEKGTLEYGQ----- 588
G+ EPF + + +++ L + I I + G++M G DE G L+YGQ
Sbjct: 815 GFSLCTEPFFRALIKAAIDFSMMRLLKKVNIPIPSNVGRSMFGVTDETGLLQYGQVFVQY 874
Query: 589 ------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGER 630
G ++V K P + GD+R+ AVD+P L H+ + ++FP G R
Sbjct: 875 TENVNNKHPSGVSGKILKGPLMVTKFPSMCEGDVRMYEAVDIPELRHLENVIVFPQNGPR 934
Query: 631 PHTNECSGSDQDGEIYFVCWDHDRIPPLQFQ--PTAY---TPAPEKILARDVTIEDVEEY 685
+E +GSD DG+ Y V WD P L F+ TA+ PEK L D E + +
Sbjct: 935 SMPDEMAGSDLDGDEYAVIWD----PFLFFERNETAFAYCNDKPEKKLNIDEMDEGMNVF 990
Query: 686 FADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAAT------ 739
+A+++ + +GI H+ S+ S C L + ++++ D+SK+GVA +
Sbjct: 991 YAEFMNQEDVGITATNHL--HQSDQYGINSKVCNILAEKNAMLLDYSKSGVAPSPLTFNW 1048
Query: 740 ---------IPSRLRVKIYPDFMEKQ---DKTWYESQHIVGNLYREVNGIAPSTTTIKSF 787
+P + + PDF + ++T Y+S ++G L+RE+ + + +
Sbjct: 1049 DKHPETKKWVPPE-KSERKPDFANNRFSMNQT-YQSSRLLGTLHRELRSV---NDVVATS 1103
Query: 788 AKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIME 847
A++ D + G+++ + R Y+ L ++M+ +G+ TEAE+ S E
Sbjct: 1104 AEKQVPLVLDDLLVWTGWEQYKSVAEAQLLR--YNGSLRSIMETFGVNTEAEVFSGYYRE 1161
Query: 848 M-AKSFDKKRD 857
+ + DK++D
Sbjct: 1162 IRNRQSDKEQD 1172
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 98/242 (40%), Gaps = 62/242 (25%)
Query: 264 GLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQ 323
G K L+T ++ + PE+ +SNR V + +R + D++ K+ L
Sbjct: 444 GFRKTRKALLTTTRKIYLAPEMIMSNRAVTGVDHDGTRIIRTTIRDDNFQKMRQYQLGDL 503
Query: 324 ISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMF----------- 372
+S E+V+ L+ G VI + F LA SNSQ RE +
Sbjct: 504 LS-----------EKVMRRLKKGFVIMGRSFSYLASSNSQMREGGTYHMERFNKKQLDLD 552
Query: 373 -----------ASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHVD---- 417
+P++ A R+++G F + +++K ARLGQ F +R + ++
Sbjct: 553 YPGIHLRKIPSGYKPKILA--YRKKLGKFEKTGSISKAMARLGQCFTQARACIGIEIGNQ 610
Query: 418 ----------------------SNIGKISAELAETVAKKCGYAI-YTPSAFQIRYGGYKV 454
+G ISA LA+ +AK + PSA+QIR+ G K
Sbjct: 611 DYQMVPDAIGGKNANGAPYMYTDGVGMISARLAQKIAKSMKLPNGFVPSAYQIRFRGLKG 670
Query: 455 TL 456
L
Sbjct: 671 ML 672
>gi|403377070|gb|EJY88529.1| Suppressor of ascus dominance [Oxytricha trifallax]
Length = 1160
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 136/642 (21%), Positives = 252/642 (39%), Gaps = 142/642 (22%)
Query: 262 DGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLS 321
D G I + +TP+ + LSN ++R + D FL++ F +DL +L
Sbjct: 313 DDGKIEAYSLTITPTFNIYNLNSQQLSNVILRQNQNYHDKFLKVDFKGDDLEDA-GQILQ 371
Query: 322 PQISSTNGE---RRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPEL 378
+ G+ + + V + GI I ++ L SNS +++T+WM +
Sbjct: 372 SKYGFKQGKPIKHKNSLSNYVWKPISEGINILHMNYQFLGNSNSSLKQHTIWMLNTSQFE 431
Query: 379 TAAD--------------IRERMGDFREI---------KNVTKYA-ARLGQSFASSREAL 414
D I+E G ++ K +T + AR Q F+ +R
Sbjct: 432 DKCDNVVRLYNGMELLQQIQESFGHLPKVVKSENKELNKGITLHTLARAAQLFSGTRHIC 491
Query: 415 HV-------------------DSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYKVT 455
+ D N G IS ELA + Y + SA+Q R GG K T
Sbjct: 492 ELRADQIEYIPDIIKNGKNFSDGN-GCISQELANKI--NAIYNLQDCSAYQFRLGGCKGT 548
Query: 456 L-------------RNNMFKYKSESTSLDILANSKYQREGVARLRLDNVFERKQREVVAR 502
L R +M K+++ TSL+I A +G +L ++ E Q +
Sbjct: 549 LVVNQELQGEKIQIRKSMKKFENSDTSLNI-ARCATPSQGFFNRQLISLIEN-QGIIFED 606
Query: 503 LDAILTDSSKVQEALELMSSAENT---------------------NVLKELLN----CGY 537
++ IL S ++ + + ++S ENT N KE +N G
Sbjct: 607 IEQILESSDQL-KFINQINSFENTIKDEDLIFSQQQAKISNLMLTNTQKEFINYISESGQ 665
Query: 538 K-----------PDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEY 586
+ ++PF+ + + +++ + RI I++ ++G D L+
Sbjct: 666 QMFKTFVEKRMDVQSDPFIKNLSKLLSHQITSQIKNKGRIPIKDSAILIGVADYLQVLQP 725
Query: 587 GQ----------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLF 624
G+ G +++ + PCLHP D+ ++AV+ H+ + V+F
Sbjct: 726 GEIFLQVQDPDINEESKDIYEVITGDVIITRSPCLHPNDVMKVKAVNCNQYKHLNNVVVF 785
Query: 625 PAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPA---PEKILARDVTIED 681
A G+ P ++ +G D DG+++ + W+ + QF P ++I+
Sbjct: 786 SANGDEPIQSQLAGGDLDGDVFHIIWNERLVS--QFTPQFLEKQKFDSKRIVGYQAKYTL 843
Query: 682 VEEYFADYIV----NDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVA 737
+ + AD ++ N+ LG I + H+ + + + + ++ DF K G
Sbjct: 844 IPQEIADSLLHFFKNNILGKIDSLHLAICDKQSPNSQHALSTEFLHQQAV--DFQKHGCK 901
Query: 738 ATIPSRLRVK-------IYPDFMEKQDKTWYESQHIVGNLYR 772
I ++ ++PD+M+ + + Y SQ I+G +YR
Sbjct: 902 PDIEEYHEIRNEGLDNQMFPDYMQSKSQDSYASQKIMGTIYR 943
>gi|255635133|gb|ACU17923.1| unknown [Glycine max]
Length = 290
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 102/197 (51%), Gaps = 8/197 (4%)
Query: 690 IVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIY 749
+VN+ LG ICNAHVV+A S A+ +C L +L++ DF KTG T+P L+ K+Y
Sbjct: 1 MVNEHLGAICNAHVVHADSSDYGALDEKCIHLAELAATAVDFPKTGKLVTMPPHLKPKLY 60
Query: 750 PDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIK--SFAKEGAMQFYDTDMEVNGFKE 807
PDFM K+ Y S+ I+G LYR + +F G YD D+EV G +
Sbjct: 61 PDFMGKERHQSYRSKKILGRLYRRIKDAYDEDIDAPYLNFVTGGIP--YDKDLEVPGSAD 118
Query: 808 VAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRD--LEAISFSV 865
D ++ + YD +L L+ Y +K E E+++ I M K +K+ E + S
Sbjct: 119 FIA--DAWEQKCSYDGQLSGLLGQYKVKREEEVVTGQIWSMPKYNSRKQGELKERLKHSY 176
Query: 866 RSLRKEARAWFNKKKND 882
+L+KE R F K +D
Sbjct: 177 SALKKEFRHTFEKLNSD 193
>gi|769816|emb|CAA83245.1| unnamed protein product [Phanerochaete chrysosporium]
Length = 953
Score = 107 bits (266), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 114/426 (26%), Positives = 168/426 (39%), Gaps = 93/426 (21%)
Query: 271 ILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDE-DLGKLYSTVLSPQISSTNG 329
+ VTP+ GP SNRV+R YPD D F+R++FVDE DL + +G
Sbjct: 434 VTVTPTTHRLDGPYPERSNRVMRMYPDYHDCFVRINFVDETDLQFRFD-------REVDG 486
Query: 330 ERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLW-----MFASRPELTAADIR 384
R I RV L NGI I + FE LA+S S +E+ +W M + + A I
Sbjct: 487 --RAFIKRRVGEILTNGIDIAGRHFEFLAYSQSALKEHAVWFVKEFMLPNGTIVNARTII 544
Query: 385 ERMGDFRE----IKNVTKYAARLGQSFASSREALHVD--------------------SNI 420
+GDF I +Y AR+ Q+F ++ ++ V S +
Sbjct: 545 AGLGDFTRDHQLIYCPARYGARISQAFTATDSSVKVQPDEVFEIDDIEGPTGTWCFTSGV 604
Query: 421 GKISAELAETVAKKCG-------YAIYTPSAFQIRYGGYK-------------VTLRNNM 460
G +S +LA + KK + Y P A QIR+ G K + LR +M
Sbjct: 605 GTMSVQLARDIWKKLAARRGGSRWKTY-PRALQIRFRGSKGMLSVDHTLQGRAICLRPSM 663
Query: 461 FKYKSESTSLDILANSKYQREGVARLRLD------------NVFERKQREVVARLD---A 505
K+++ + DI + R G L VFE Q V
Sbjct: 664 IKFEAPESLTDIEIARAFNRPGPFYLNRPLIMIMEHLGVPYEVFEELQDMAVEEAQESVE 723
Query: 506 ILTDSSKVQEALELMSSAENTNVLKELLNCGYKP-DAEPFLSMMPQTFHASNLLELRTRA 564
L ++++ E L +S T++ L G P + F M L EL+ A
Sbjct: 724 SLEKAARLLETFGLGASYRLTSIFLSLHKLGVGPLTGDEFWQKMMDFAINHVLRELKHHA 783
Query: 565 RIFIQNGQAMMGCLDEKGTLE-----------------YGQGLMVVAKKPCLHPGDMRVL 607
RI + N ++G D G LE Y G +V + P +HPGD++V
Sbjct: 784 RIPVPNAWNLVGVADVHGYLEQDEVFGCIYPLDGTGPIYLDGPTLVTRSPTIHPGDVQVA 843
Query: 608 RAVDVP 613
+ P
Sbjct: 844 HGIGRP 849
>gi|405952888|gb|EKC20645.1| Putative RNA-dependent RNA polymerase SHL2 [Crassostrea gigas]
Length = 1226
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 126/251 (50%), Gaps = 45/251 (17%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
V ++++TP+K F E NR++R Y D F+R+ + DED K+ +TV S +
Sbjct: 930 VGRMILTPTKTVFLPKEPVFQNRILREYGP--DFFIRVVYRDEDFEKM-NTVQSCLLDD- 985
Query: 328 NGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERM 387
+ + + L++G I ++ +E L SNSQ RE++ W F ++T+ IR
Sbjct: 986 -------VLKIMKQFLKDGFRIRNRHYEFLGCSNSQLREHSFWFFHPHDDITSESIRNNS 1038
Query: 388 GDFREIKNVTKYAARLGQSFASSREALHVDSN------------------IGKISAELAE 429
G+F + + V Y +R G F+S+R + VD + IG+IS +LA+
Sbjct: 1039 GEFSKDRCVASYVSRFGLCFSSTRRTVDVDESCLIYDDDVKKDEYCFTDGIGRISTKLAK 1098
Query: 430 TVAKKCGYAIYTPSAFQIRYGGYK---------------VTLRNNMFKYKSESTSLDILA 474
VA + + PSAFQIR+GG K + +R +M K++S+S +L+IL
Sbjct: 1099 KVAAELHISP-IPSAFQIRFGGCKGVVAQDPTLGDDADVLVIRKSMIKFESKSNNLEILG 1157
Query: 475 NSKYQREGVAR 485
++ R + R
Sbjct: 1158 ETRPGRLHLNR 1168
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 106/204 (51%), Gaps = 30/204 (14%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
V ++++TP++ F E NR+VR Y + D F+R+ F DED K+ STV S + +
Sbjct: 371 VARMVLTPTRSLFLPKEPMFQNRIVREYGE--DFFIRVVFRDEDFEKI-STVQSDAVEN- 426
Query: 328 NGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERM 387
I ER+ + +G I + +E L SNSQ RE++ W F R ++T+ +IR
Sbjct: 427 -------ILERMKTFFEDGFQIQTRDYEFLGCSNSQLREHSFWFFHPRDDITSENIRNSS 479
Query: 388 GDFREIKNVTKYAARLGQSFASSREALHVD------------------SNIGKISAELAE 429
G+ + V Y +R G F+S+++ + VD IG+IS +LAE
Sbjct: 480 GELSTERCVASYVSRFGLCFSSTKKTVDVDKGCVQYTDDVQNDEYCFTDGIGRISTKLAE 539
Query: 430 TVAKKCGYAIYTPSAFQIRYGGYK 453
V+ + + PSAFQIR+GG K
Sbjct: 540 KVSNELNISP-VPSAFQIRFGGCK 562
>gi|66736429|gb|AAY54273.1| RNA-dependent RNA polymerase [Caenorhabditis remanei]
Length = 200
Score = 106 bits (264), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 101/198 (51%), Gaps = 36/198 (18%)
Query: 571 GQAMMGCLDEKGTLEYGQ-------------------------------GLMVVAKKPCL 599
G++M+G +DE G L+YGQ G +++ K PC+
Sbjct: 6 GRSMLGIVDETGRLQYGQIFVQYTRNSNEKLPPRSNMQHMKVQGSQVVTGTVLLTKNPCI 65
Query: 600 HPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ 659
GD+R+ AVD+P LHH+ D V+FP G RPH +E +GSD DG+ Y V WD +
Sbjct: 66 VTGDVRIFEAVDIPELHHLCDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQQLLLDKN 125
Query: 660 FQPTAYTPAPEKI-LARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNR- 717
P +T +++ R++ + + E++ Y+ DS+G I N H+ ++ +++R
Sbjct: 126 EAPFDFTVEKKEMPYDREMIDQLMHEFYVKYLKLDSVGTISNNHL---HNSDQYGLNSRV 182
Query: 718 CPDLVKLSSIVGDFSKTG 735
C DL K + DF+K+G
Sbjct: 183 CMDLAKKNCQAVDFTKSG 200
>gi|336378304|gb|EGO19462.1| hypothetical protein SERLADRAFT_478899 [Serpula lacrymans var.
lacrymans S7.9]
Length = 496
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 103/397 (25%), Positives = 172/397 (43%), Gaps = 67/397 (16%)
Query: 547 MMPQTFHASN---LLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ--------------- 588
++ T H ++ L EL+ RA I + ++G DE G L G+
Sbjct: 42 LVGNTLHCASTHALRELKYRAHIAVPGSYTLLGVSDEWGCLREGEIYATVQDERTGLYKP 101
Query: 589 --GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIY 646
G +V+ + P +HPGD++ + AV P L H+ + V+F +G+R + +G D DG+ +
Sbjct: 102 IEGPVVITRSPQVHPGDLQFVTAVRRPELSHLTNVVVFSCEGDRSLASCLAGGDLDGDDF 161
Query: 647 FVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYA 706
+ D P P AY P K I DV ++ +YI +D +G I H+ +A
Sbjct: 162 NLILDEALFPEKVAMPGAYDSLPIKQTTSPCGISDVVDFVMNYIESDLIGYISILHLRFA 221
Query: 707 YSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPS--RLRVKIYPDFMEK-----QDKT 759
+ N C L + +S D+ KTG + +L K PDF+ + Q +
Sbjct: 222 --DIKDPGCNECLKLAQFASHAVDYPKTGSPVKMQDLPQLPGKERPDFLAREGANLQGED 279
Query: 760 WYESQHIVGNLYREVNGIAPSTTTI-----KSFAKEGAMQFYDTDMEVNGFKEVAMQFDG 814
+Y+SQ ++G LYR V P + I + ++ DT M N F+ Q D
Sbjct: 280 FYQSQKLLGKLYRRV----PVSEWIPVPWNRDYSPSDGGVIRDTLMRFN-FR----QLDL 330
Query: 815 FKYRTEYDN---KLGNLMDYYGIK------------------TEAEMLSRCIMEMAKSFD 853
T D+ ++G L++ Y + +EAE++S IM
Sbjct: 331 PSLDTPSDDLIEEMGYLLEDYSEQLLVIAKTHTISRHKDIYVSEAELVSGTIMANWSDHR 390
Query: 854 KKRD-LEAISFSVRSLRKEARAWFNKKKNDSDSSHKD 889
K+R+ + A++ + L K R + +D DS + D
Sbjct: 391 KRREAIGAMNLQTQVLAKNIRQAL--QWSDPDSYYDD 425
>gi|393244916|gb|EJD52427.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 813
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 105/399 (26%), Positives = 164/399 (41%), Gaps = 83/399 (20%)
Query: 338 RVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREI---K 394
R+L +R+G+ G +F L F+ SQ L F T + E G+ +
Sbjct: 72 RLLELMRHGLETGGSRFSFLGFTESQLGAGALLFFEEGDGYTIDSMLEYFGELEPVFVKS 131
Query: 395 NVTKYAARLGQSFASSR--------------EALHVDSNI-----GKISAELAETVAKKC 435
KYAARLG SF+S++ + +D + G I LA +
Sbjct: 132 GYGKYAARLGLSFSSTKPVYELSPSDLISIDDRFALDGTVTTDGCGLIKDSLARQLCILL 191
Query: 436 GYAIYTPSAFQIRYGGYKVTL---------------------RNNMFKYKSESTSLDILA 474
G A T + FQ+R GG K L R +MFKY+ +++
Sbjct: 192 GIA-NTTAIFQVRIGGIKGVLARYPDDVFERLAQNSVAVIAYRPSMFKYRGGPQIVELNK 250
Query: 475 NSKYQREGVARLRLD------------NVFERKQREVVARLDAILTDSSK----VQEALE 518
SK R ARL + VF++ + R+D I +D ++ A +
Sbjct: 251 ISK-TRPDSARLNIQFILLLLTLGVGVEVFQQLLSIQLERIDNIFSDRKSAIAFLENAYD 309
Query: 519 LMSSAENTNVLKE----LLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAM 574
+ + T L + +L+ G+ +EP L T L L+ + +I +Q+ +
Sbjct: 310 VTLDSNATRSLYQDAFLMLHAGFDL-SEPQLQWSLNTLRTQMLKRLQDKLQIEVQDSAML 368
Query: 575 MGCLDEKGTLE--------------YGQGLMVVAKKPCLHPGDMRVLRAVDVPALHHM-V 619
G DE +LE +G +VV K P PGD+RV +AVD P+L
Sbjct: 369 FGVCDETNSLEEDEVYVNLPERGGGFGGRTVVVMKNPAYAPGDIRVFKAVDRPSLRICPT 428
Query: 620 DCVLFP--AKGERPHTNECSGSDQDGEIYFVCWDHDRIP 656
+C++F A+ R ++ SG D DG+ +FV WD IP
Sbjct: 429 NCIVFASSARCGRSPADKMSGGDLDGDTFFVSWDSSLIP 467
>gi|405974297|gb|EKC38953.1| Translocon-associated protein subunit beta [Crassostrea gigas]
Length = 1284
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 121/267 (45%), Gaps = 47/267 (17%)
Query: 246 KHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRL 305
K + + A + G + +I++TP+K F E + NR++R Y +E F+R+
Sbjct: 439 KQIEKNEIIIKEADDMPPGYSNIRRIVLTPTKHVFYPKEPIVQNRIIRQYAEEY--FIRI 496
Query: 306 SFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQER 365
F DED K+ + ++P + + + + L G I +++E L SNSQ R
Sbjct: 497 VFRDEDYEKV--SAIAPNSLDS-------VIDAMKQFLCAGFRILTRRYEFLGCSNSQLR 547
Query: 366 ENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHV--------- 416
E+ W F + A IR+ GD + V Y +R G F++SR+ + V
Sbjct: 548 EHGFWFFCPNDDTNAQMIRDNCGDIYLERCVASYVSRFGLCFSASRDTVDVGMQDGELVH 607
Query: 417 -----------DSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK------------ 453
IGKIS LA V K GY + PSAFQIRYGG K
Sbjct: 608 QKDIEWNNYCFSDGIGKISPCLANKVTKALGYKV-KPSAFQIRYGGCKGVVSQDPDLGEE 666
Query: 454 ---VTLRNNMFKYKSESTSLDILANSK 477
+ +R +M K+ SES L+IL +K
Sbjct: 667 KDVLVIRESMNKFNSESKKLEILQVTK 693
>gi|241168347|ref|XP_002410232.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
gi|215494759|gb|EEC04400.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
Length = 632
Score = 103 bits (256), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 97/340 (28%), Positives = 152/340 (44%), Gaps = 61/340 (17%)
Query: 560 LRTRARIFI--QNGQAMMGCLDEKGTLEYGQGLMVVAKKPCLHPGDMRVLRAVDVPALHH 617
LRTR RI + G+ M+G +DE +LEYG+ + V P +D A
Sbjct: 2 LRTRTRIAVPPNKGRNMLGVVDETYSLEYGE--VFVQYTP------------LDTTA--- 44
Query: 618 MVDCVLFPAKGERPHTNECS-------GSDQDGEIYFVCWDHDRI-PPLQFQPTAYTPAP 669
+G + E S GSD DG+ Y V W+ D P QP ++ +
Sbjct: 45 --------GQGAQKKEEEGSRRAQILTGSDLDGDEYIVIWEEDLFFPGCNKQPMVFSDSS 96
Query: 670 EKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVG 729
+ + + ++ +YI ND++GI+ NAH+ +A E D S RC + + S
Sbjct: 97 STATSNNSL--GMIQFVCNYIKNDNVGIMSNAHLAWADKEGDGIFSKRCLKIAQKISTCL 154
Query: 730 DFSKTGVAATIPSRLRVKIYPDFMEKQD-KTWYESQHIVGNLYREVNGIAPSTTTIKSFA 788
DF+KTG A++ + YPDFMEK K Y SQH++G+LYR + +T
Sbjct: 155 DFAKTGETASLDRDEKPLQYPDFMEKGGFKDTYRSQHVLGHLYRLHRSLEAVVST----- 209
Query: 789 KEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTE--------YDNKLGNLMDYYGIKTEAEM 840
F D + +G ++ G++ E Y +++ ++ +GIKTE E+
Sbjct: 210 -----NFQDRAADGDG-NHALFEYPGWRDHEESAQTALAVYGSRMEQILRQHGIKTEGEV 263
Query: 841 LSRCIMEMA---KSFDKKRDLEA-ISFSVRSLRKEARAWF 876
+S I ++ KS K +EA + R L K R F
Sbjct: 264 VSGIINSVSDYNKSKTDKASVEALVEKQYRDLVKSTREQF 303
>gi|341879478|gb|EGT35413.1| hypothetical protein CAEBREN_30970 [Caenorhabditis brenneri]
Length = 1948
Score = 103 bits (256), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 97/385 (25%), Positives = 173/385 (44%), Gaps = 76/385 (19%)
Query: 536 GYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQN--GQAMMGCLDEKGTLEYGQ----- 588
G+ EPF + + +++ L + I I + G++M G DE G L+YGQ
Sbjct: 1006 GFSLCTEPFFRALIKAAIDFSMMRLLKKVNIPIPSNVGRSMFGVTDETGLLQYGQVFVQY 1065
Query: 589 --------------------------------GLMVVAKKPCLHPGDMRVLRAVDVPALH 616
G ++V K P + GD+R+ AVD+P L
Sbjct: 1066 TENVNNKHPSGVSGKILKGKSNFLSFKIQFISGPLMVTKFPSMCEGDVRMYEAVDIPELR 1125
Query: 617 HMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQ--PTAY---TPAPEK 671
H+ + ++FP G R +E +GSD DG+ Y V WD P L F+ TA+ PEK
Sbjct: 1126 HLENVIVFPQNGPRSMPDEMAGSDLDGDEYAVIWD----PFLFFERNETAFAYCNDKPEK 1181
Query: 672 ILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDF 731
L D E + ++A+++ + +GI H+ S+ S C L + ++++ D+
Sbjct: 1182 KLNIDEMDEGMNVFYAEFMNQEDVGITATNHL--HQSDQYGINSKVCNILAEKNAMLLDY 1239
Query: 732 SKTGVAAT---------------IPSRLRVKIYPDFMEKQ---DKTWYESQHIVGNLYRE 773
SK+GVA + +P + + PDF + ++T Y+S ++G L+RE
Sbjct: 1240 SKSGVAPSPLTFNWDKHPETKKWVPPE-KSERKPDFANNRFSMNQT-YQSSRLLGTLHRE 1297
Query: 774 VNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYG 833
+ + + + A++ D + G+++ + R Y+ L ++M+ +G
Sbjct: 1298 LRSV---NDVVATSAEKQVPLVLDDLLVWTGWEQYKSVAEAQLLR--YNGALRSIMETFG 1352
Query: 834 IKTEAEMLSRCIMEM-AKSFDKKRD 857
+ TEAE+ S E+ + DK++D
Sbjct: 1353 VNTEAEVFSGYYREIRNRQSDKEQD 1377
>gi|134077480|emb|CAK40045.1| unnamed protein product [Aspergillus niger]
Length = 377
Score = 103 bits (256), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 104/212 (49%), Gaps = 6/212 (2%)
Query: 590 LMVVAKKPCLHPGDMRVLRAVDVPALH---HMVDCVLFPAKGERPHTNECSGSDQDGEIY 646
+++V + P LH GD++ + V P H + + ++F +KG R ++ SG D DG+I+
Sbjct: 1 MVLVTRSPALHDGDIQFAQNVIPPDNHPLAELTNSIVFSSKGYRDLPSQLSGGDLDGDIF 60
Query: 647 FVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYA 706
V WD D P F P Y + R V +D+ ++F D++ D LG+I H++ A
Sbjct: 61 NVIWDTDAYPVRTFAPADYPRVSPVDIGRPVERDDMAQFFLDFMKTDHLGVIATRHMIMA 120
Query: 707 YSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIY-PDFMEKQDKTWYESQH 765
E + C L +L S DFSKTG+ + + K + PD +Y S+
Sbjct: 121 DQEAEGTSHPVCRKLAQLHSTAVDFSKTGIPVQMSEIPKGKPFRPDLYPFH--KYYRSEK 178
Query: 766 IVGNLYREVNGIAPSTTTIKSFAKEGAMQFYD 797
I+G LYR V+ I+S + +F++
Sbjct: 179 ILGKLYRGVDERQIWQEDIQSKVQPNEDEFWN 210
>gi|389748392|gb|EIM89569.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1274
Score = 102 bits (254), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 151/664 (22%), Positives = 267/664 (40%), Gaps = 176/664 (26%)
Query: 269 NKILVTPSKVYFCGPEISLSNRVVRSYPDE----IDNFLRLSFVDEDLGKLYSTVLSPQI 324
+ I +TP+++ GP + +NRV+R Y + + NF+R+ F DED +
Sbjct: 426 HHITITPTRMLLEGPYPTQNNRVIRGYQEYDSTLVGNFVRVDFRDEDRFQYRFN------ 479
Query: 325 SSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERE-NTLWMF-------ASRP 376
+ +G + +RVL L+ G +G + F+ A+S+S R+ + LW + P
Sbjct: 480 RAVDGG--YLLEKRVLDFLKPGFSLGGRHFDFFAYSSSSLRDSHALWAIHPFDVPVGASP 537
Query: 377 -----ELTAADIRERMGDFREIKN-VTKYAARLGQSFASSREAL---------------- 414
+TA IR +G+F + N +K AAR+GQ+ +++ ++
Sbjct: 538 TILCGHITADMIRHSLGNFSTVINQPSKLAARVGQTCSATTPSVRLKREQWDDDMVDLGE 597
Query: 415 ----HVDSNIGKISAELAETV-AKKCGYAI------YTPSAFQIRYGGYK---------- 453
H D +G IS++L + + A C P AFQIR+ G+K
Sbjct: 598 SPYEHTDG-VGTISSDLRDEIWATLCSKGWDKDKDRAKPDAFQIRFLGFKGVVVVDYCLT 656
Query: 454 ---VTLRNNMFKY-----KSESTSLDIL-ANSKYQREGVAR----------LRLDNVF-- 492
+ LR +M K+ + + S +I+ A + R + R + +D
Sbjct: 657 GIRMRLRPSMKKFDVDEEEKNNASFEIVRAFDRPNRYSLNRSTIMVLEDRGVPIDTFMKL 716
Query: 493 -ERKQREVVARLDAILT--------------DSSKVQEALELMSSAENTNVLKELLNCGY 537
E+ + + D+I + D + E L ++ + + NV++ N
Sbjct: 717 QEKAKETIFTAGDSIASFVAFLRINRLGIGFDLPLILERLAVLKDSSHKNVVRSFEN--- 773
Query: 538 KPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEK-------------GTL 584
PFL + + S L +L+ +A+I + G ++G DE TL
Sbjct: 774 -----PFLERVLRFAMNSRLRDLKHKAQIPVPGGFKLVGVADEGQAYIQEGLDPSSVATL 828
Query: 585 EYGQ-----------------GLMVVAKKPCLHPGDMRVLRAVDVPA------LHHMVDC 621
+ G+ G + + P PGD++ +RA+ P + +
Sbjct: 829 KEGEIYACVRDGHKAEPKFLKGDCFITRSPVNDPGDIQRVRAIGKPPEDKVCFFRGLQNV 888
Query: 622 VLFPA-KGERPHTNECSGSDQDGEIY----FVCWDHDRIPPLQFQPTAYTPAPEKILARD 676
V+ PA G R + G D DG+++ F C D + +P L P Y L
Sbjct: 889 VVLPAVPGTRSLASCLGGGDVDGDMFDIVGFDC-DSNLLPTLHKPPAEYKSVGTYTLDHP 947
Query: 677 VTIEDVEEYFADYIVNDSLGIICNAHVVYAYS---------------EPDKA---MSNR- 717
T +DV + +YI +D LG++ + A PD++ MSN
Sbjct: 948 ATEDDVWSFVVEYIQSDVLGLLSERLLTIAGETLSSSVHRPTNGTDVSPDQSEDGMSNPL 1007
Query: 718 CPDLVKLSSIVGDFSKTGVAATI------PSRLRVK-IYPDFMEKQDKTWYESQHIVGNL 770
C +L KL S D+ K G+A P+R R + ++++ +Y+S +G L
Sbjct: 1008 CLELAKLCSQAVDYPKNGIAVETDRIPYPPTRFRPNWARAEVSDEREGDFYQSDRALGRL 1067
Query: 771 YREV 774
+ V
Sbjct: 1068 FENV 1071
>gi|413938755|gb|AFW73306.1| hypothetical protein ZEAMMB73_707398 [Zea mays]
Length = 208
Score = 101 bits (252), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 95/170 (55%), Gaps = 9/170 (5%)
Query: 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKG----SRAHAIVEFTTVEA 56
+ + I + GFA S ++VK FLE G GT+ +++ + SRA AIV+F + E+
Sbjct: 2 VGRTIQVQGFALTDSAESVKLFLERIAGAGTICALKLRHPRNISANSRAFAIVQFQSQES 61
Query: 57 ADFIKCLA-RERLSYGNSFLKASSAKRR-TPHFAKRTPHYKLGGDLKLNFGCQISKDKFS 114
A ++ A R+ L G +L+ A R P R P + L D+ L+ GC + ++ S
Sbjct: 62 ASLVENAAQRQVLKIGRFYLRTRPADRDIVPR--PRIPMFSLE-DIVLHLGCLVKENILS 118
Query: 115 VFWSQENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSGH 164
+ NVSV+ D++K F+LSY +KLELS ESIW+++LHRP +
Sbjct: 119 ALFRASNVSVQFGFDMKKIYFYLSYNFTKFKLELSYESIWEMQLHRPPAY 168
>gi|317031168|ref|XP_001392956.2| hypothetical protein ANI_1_2224074 [Aspergillus niger CBS 513.88]
Length = 1206
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 101/221 (45%), Gaps = 34/221 (15%)
Query: 589 GLMVVAKKPCLHPGDMRVLRAVDVPALH---HMVDCVLFPAKGERPHTNECSGSDQDGEI 645
G+++V + P LH GD++ + V P H + + ++F +KG R ++ SG D DG+I
Sbjct: 797 GMVLVTRSPALHDGDIQFAQNVIPPDNHPLAELTNSIVFSSKGYRDLPSQLSGGDLDGDI 856
Query: 646 YFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVY 705
+ V WD D P F P Y + R V +D+ ++F D++ D LG+I H++
Sbjct: 857 FNVIWDTDAYPVRTFAPADYPRVSPVDIGRPVERDDMAQFFLDFMKTDHLGVIATRHMIM 916
Query: 706 AYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIY-PDFM---------EK 755
A E + C L +L S DFSKTG+ + + K + PDFM K
Sbjct: 917 ADQEAEGTSHPVCRKLAQLHSTAVDFSKTGIPVQMSEIPKGKPFRPDFMALGPVARIHNK 976
Query: 756 QD---------------------KTWYESQHIVGNLYREVN 775
D +Y S+ I+G LYR V+
Sbjct: 977 SDIELEEYVIQAAYDEDDDMEPFHKYYRSEKILGKLYRGVD 1017
>gi|403358455|gb|EJY78878.1| RNA-directed RNA polymerase [Oxytricha trifallax]
Length = 1079
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 124/567 (21%), Positives = 229/567 (40%), Gaps = 110/567 (19%)
Query: 288 SNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGE---RRTRIYERVLSTLR 344
SN+V+R + +D FL++ F+ G +L+ Q G+ RR + + + L
Sbjct: 259 SNQVIRRHFTNVDKFLKIKFLG---GNQELELLNDQYMRIKGDYQIRRNLVTNLLWNILG 315
Query: 345 NGIVIGDKKFETLAFSNSQERENTLWMFASRPE----LTAA--------DIRERMGDFRE 392
GI I +K F+ L +SNSQ ++ + W E L +A I +
Sbjct: 316 YGISINNKTFKFLGYSNSQLKDRSFWFLRQAVENDLKLNSAIMSMYGIVAIPSNLNKKEY 375
Query: 393 IKNVTKYAARLGQSFASS-------REALHVDSNI-----------------GKISAELA 428
+ V ++ ++ SS R + V ++I G IS +L+
Sbjct: 376 LGEVLNCHGKVANNYTSSDFIIKLERNQIQVINDIVRHDYQDNRDFNFTDGNGLISQKLS 435
Query: 429 ETVAKKCGYAIYTPSAFQIRYGG-------------YKVTLRNNMFKYKSESTSLDILAN 475
+ + Y + S +Q+R GG KV LR++M K K+ T L+I+
Sbjct: 436 NMINQH--YGLKNCSVYQVRIGGAKGTLTVDQRLKGKKVILRSSMIKLKNNITDLNIVQC 493
Query: 476 SKY-----QREGVARLRLDNV-----FERKQREVVARLDAILT----------DSSKVQE 515
K R+ +A D V FE ++ + + L+ D + +++
Sbjct: 494 GKAGLGYSNRQVIALFEHDGVHKEEFFELIKKNIQYQFFKQLSQGQAQSVSYYDLAFLEQ 553
Query: 516 ALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMM 575
L + A + K+ Y P + ++ + Q + ++ + RI+++N ++
Sbjct: 554 HLTHLVGAFKYFIRKKPEILRYDPLFQSIVNQLKQEI----MRQITEKGRIYMKNSVVLL 609
Query: 576 GCLDEKGTLEYGQ---------------------GLMVVAKKPCLHPGDMRVLRAVDVPA 614
G D G L+ + G +VV + P LHP D+R L AVD P
Sbjct: 610 GVPDFLGILQENEIFLQIPKYNDLEQGEQYQVIRGDVVVTRNPALHPNDIRKLVAVDRPE 669
Query: 615 LHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTP-APEKIL 673
++ + V+F +G P + +G D DG+ Y + W+ + Y P++++
Sbjct: 670 FRYLRNAVVFSTQGSIPPSTMMAGGDHDGDRYLIIWERSIVNNFLANQIRYKYFDPKRLM 729
Query: 674 AR---DVTIEDVEEYFADYIVNDSLGIICNAHV-VYAYSEPDKAMSNRCPDLVKLSSIVG 729
+ ++ + + Y+ +D LG+I + H+ + Y P+ + L L
Sbjct: 730 KKGRYNIQPQMIASSIVKYVRSDYLGLIDSMHLGLCDYLGPNHDFT---LYLEYLHRQAV 786
Query: 730 DFSKTGVAATIPSRLRVKIYPDFMEKQ 756
D+SK G A I L +I ++ KQ
Sbjct: 787 DYSKHGKAPNIKQFLLERIRLNYDRKQ 813
>gi|389743114|gb|EIM84299.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1120
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 119/494 (24%), Positives = 195/494 (39%), Gaps = 93/494 (18%)
Query: 328 NGERRTRIYERVLS-TLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRE- 385
+G+ R+R +++ + GI ++ L ++ SQ + MF T +R
Sbjct: 78 DGDVRSRDIPKIMEHVVHEGIQQDGHRYTFLGYTESQLKATQFMMFEGDKAATQKLLRTF 137
Query: 386 -RMGDFREIKNVTKYAARLGQSFASSREALHVDSNIGKISAELAETVAKK-------CG- 436
++ + KYAARLG SF+S+ A+ +D+ +++ E+ + VA+ CG
Sbjct: 138 GKLDAVYQKSGYGKYAARLGLSFSST--AVGLDAPHSRVT-EIPDLVARDGTLMSDGCGV 194
Query: 437 -----YAIYTPS--------AFQIRYGGYK---------------------VTLRNNMFK 462
AI + QIR+ G+K + +R +M K
Sbjct: 195 IRDSVLAIICANRGIRRDTHCIQIRWNGHKGMLVGYPDAFCTDVLHMGENWIAVRPSMKK 254
Query: 463 YKSESTSLDILANSKYQREGVARLRLDNVF------------ERKQREVVARLDAILTDS 510
Y TSL+I N+ G ARL + E + +LD +TD
Sbjct: 255 YDGRLTSLEI--NAVSHPAGSARLNKMYILLLLTAGIPAATIHELLNEQLEKLDLFMTDR 312
Query: 511 SKVQEALELMSSAE--------NTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRT 562
K E LE SA+ N + + LL +EP++ + + LR
Sbjct: 313 DKAIEILEGTDSAQLDADGEGFNQELFEGLL--ASHDLSEPYVKWLMLKYQKLRYRRLRE 370
Query: 563 RARIFIQNGQAMMGCLDEKGTLEYGQ-------------GLMVVAKKPCLHPGDMRVLRA 609
+ I ++ + G +DE TL+ + G +VV + P PGDMRV +A
Sbjct: 371 KICIDVKLSWLLFGIVDESRTLKPDEVYIHMPHRDGVIIGWVVVCRTPAYAPGDMRVFKA 430
Query: 610 VDVPALHHMVDCVLFPAKGERPH--TNECSGSDQDGEIYFVCWDHDRIPPLQ--FQPTAY 665
V P L H +C++F P T+ SG D DG+ ++VC D +P F P+
Sbjct: 431 VSKPELLHHTNCIVFSGHESCPRSVTDMISGGDLDGDKFWVCSDPRLVPKRSNIFPPSQR 490
Query: 666 TPAPEKILARDVTIEDVEEYFADYIV----NDSLGIICNAHVVYAYSEPDKAMSNRCPDL 721
+ +R +++D+ + D V LG I + + PD A S L
Sbjct: 491 ASPAAAVSSRKNSLKDMPQASIDTFVIQHGTSLLGQISRKWTAHTANHPDLAASEESRKL 550
Query: 722 VKLSSIVGDFSKTG 735
D +KTG
Sbjct: 551 ASCFEAAVDLTKTG 564
>gi|4768840|gb|AAD29638.1|AF117611_1 DosA protein [Dictyostelium discoideum]
Length = 1069
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 126/538 (23%), Positives = 222/538 (41%), Gaps = 124/538 (23%)
Query: 421 GKISAELAETVAKKCGYAIYTPSAFQIRYGGYK-------------VTLRNNMFKYKSES 467
G I +L E + ++ Y T A+QIR GG K + +R +M K++ +
Sbjct: 18 GFIGFKLVELINQQNNYNSST-CAYQIRLGGSKGVLVLNENIDEMSLQIRPSMSKFELDY 76
Query: 468 TS---------LDILANSKYQREGVARLRLDNVFERKQREVVARL-DAILTDSSKVQE-A 516
S L+I++ S +R +L+ R+ + L +A + DS+ +Q
Sbjct: 77 KSGQLDGGHKTLEIVSAST-----TSRCKLN-------RQAITLLSNAGVEDSTFLQMLE 124
Query: 517 LELMSSAE---NTNVLKELLN------CGYKPDAEPFLSMMPQTFHASNLLELRTRARIF 567
+EL +A+ + N+ KELL Y+ + ++ + + S L++++ + I
Sbjct: 125 VELNQNAQTLVDVNLSKELLGDFFQHITEYELFNDYYIRSILLKLYKSKLIKIQDKCWIE 184
Query: 568 IQNGQAMMGCLDEKGTLEYGQ---------------------GLMVVAKKPCLHPGDMRV 606
++ + ++G D GTL G + V K PC HPGD+R
Sbjct: 185 VKESRNLLGVCDTSGTLPEDTVYIEVEELDPIDNLMKPKVIIGRVAVLKNPCHHPGDVRF 244
Query: 607 LRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRI-------PPLQ 659
L+A+D P L+ + + F G P+ +CSGSD DG+ YFV +D I P
Sbjct: 245 LKAIDHPPLNGKRNVLFFSTNGMVPNFKQCSGSDLDGDRYFVIYDQTLIREDLITHEPYL 304
Query: 660 FQPTAYTPAPEKILARDVTIED----------------------VEEYFADYIVNDSLGI 697
+ P + + D E+ + + + + LG
Sbjct: 305 GEEQTVNPLIGEEDSDDDQYENDDNDITIPTSTTTKSTNNTPTKLSDIYLKNVDKSKLGT 364
Query: 698 ICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIP----SRLRVKIYPDFM 753
I N H+ A S+ +K S + +I D KT V IP S L+ K YP FM
Sbjct: 365 ISNTHL--AISDIEKVSSINSIKVAIQCAIEVDSVKTSVHGIIPRDVKSILKEKGYPHFM 422
Query: 754 EKQD-----------KTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEV 802
+ ++ + +Y S ++G +Y A + F E + D + V
Sbjct: 423 KIKNGSTFEYKGGNQRKYYISDRVIGKIYDS----AENLLWFGDFLPEAKV---DESLLV 475
Query: 803 NGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRDLEA 860
G+KE + + F +Y +K+ +++ +G ++E ++L I M F +K +EA
Sbjct: 476 QGYKE-YLNHENFTTYMDYKSKINSILRRFGAQSEEDLL---IGFMDPQFSEKLSIEA 529
>gi|241083173|ref|XP_002409051.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
gi|215492624|gb|EEC02265.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
Length = 597
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 166/344 (48%), Gaps = 59/344 (17%)
Query: 240 LREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEI 299
L Q+RK SS P G + ++ VTPS+V+F P + NRV+R + E
Sbjct: 261 LFHQFRKVHSSDIVP--------AGSYLIRRLFVTPSRVFFLPPLLFRENRVLRRFNPEY 312
Query: 300 DNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLST-LRNGIVIGDKKFETLA 358
+R++F D++L +L +++ + RR + + ++ LR G+ +G+++F+ LA
Sbjct: 313 A--MRVTFRDDNLQQLSRSLMFHR-------RRDEMVDAIVGKFLREGVAVGNRRFKFLA 363
Query: 359 FSNSQERENTLWMFASRPELTAAD-IRERMGDFREIKNVTKYAARLGQSFASSREALHV- 416
S SQ R++ W++A D IR MGDF I N+ K AR+GQ F+S+ E L V
Sbjct: 364 TSCSQLRDHGAWLYAEDSLGNTVDLIRTWMGDFSGIPNIAKKMARMGQCFSSTMETLKVP 423
Query: 417 -DSNIGKISAEL--------AETVAKKCGYAIYTPSAFQ-IRYGGY-------------K 453
+I +++ ++ A+ + G + + S + IRY GY K
Sbjct: 424 LKGDIVQMTPDIVGGRHPVSAKEFSFSDGIGMISASLMEKIRYAGYKGMLCLNPCLQGDK 483
Query: 454 VTLRNNMFKYK-SESTSLDILANSK-----YQREGVARLRLDNVFER-----KQREVVAR 502
+ LR +M K+ S S +L+++ S R + L V R +Q V+
Sbjct: 484 LVLRPSMRKFDCSSSDNLELVKVSAPRLVCLNRPLITILEQLGVPSRVFLCLQQSTVLQC 543
Query: 503 LDAILTDSSKVQEALELMSSAENTNV-LKELLNCGYKPDAEPFL 545
DA++ +++ AL+++S T++ EL+ G+ +PF+
Sbjct: 544 TDALVCETT----ALQVLSGFGGTSLPFAELVRGGFCLTRDPFV 583
>gi|302682736|ref|XP_003031049.1| hypothetical protein SCHCODRAFT_57049 [Schizophyllum commune H4-8]
gi|300104741|gb|EFI96146.1| hypothetical protein SCHCODRAFT_57049 [Schizophyllum commune H4-8]
Length = 739
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 113/445 (25%), Positives = 190/445 (42%), Gaps = 97/445 (21%)
Query: 272 LVTPSKVYFCGPEISLSNRVVRSYP-DEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGE 330
++TP+++ GP SNRV+R + D+FLR+SF +E T L + +
Sbjct: 297 IITPTRIILQGPYPERSNRVIRMFDVQHHDSFLRVSFTEE-------TKLQYRFDR-EVD 348
Query: 331 RRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMF----ASRPELTAADIRER 386
+ + RV S L+NG+VI ++FE LA+S S +E+T++ E+ AA +
Sbjct: 349 TASFVRSRVGSILKNGLVIAGREFEFLAYSQSALKEHTVYFVKPFRVGDTEVNAASVIAS 408
Query: 387 MGDFREIKN---VTKYAARLGQSFASSREAL--------------------HVDSNIGKI 423
+G+F + + +YAARL Q+F ++ ++ H +G +
Sbjct: 409 IGNFEKSSDRLCPARYAARLSQAFTATDASIVVNPAETHIISDISTPDGMYHFTDGVGTM 468
Query: 424 SAELA-------ETVAKKCGYAIYTPSAFQIRYGGYK-------------VTLRNNMFKY 463
S E+A K+ P+AFQIR+ G K V LR++M K+
Sbjct: 469 SREMAVDAYTEVNRYRKRAMNGRGIPAAFQIRFMGSKGMLSVDHTLQGRVVCLRDSMIKF 528
Query: 464 KSESTS-------LDILANSKYQREGVARLR-LDNVFER-KQREVVARLDAI-----LTD 509
+ D A R + L L +E Q + A DA LT
Sbjct: 529 DCPNNRNLEIARVFDRPAKYYLNRPLIMLLEGLGVPYETFLQHQDAAVQDAYSSTESLTK 588
Query: 510 SSKVQEALELMSSAENTNVLKELL---NCGYKPDAEPFLSMMPQTFHASNLLELRTRARI 566
++++ EAL L +S ++L L+ N D + + M+ H L EL+ ARI
Sbjct: 589 AARMLEALGLGTSFRLPSLLLNLVKLCNIENLGDNKFYSRMLEFAIHHV-LRELKNHARI 647
Query: 567 FIQNGQAMMGCLDEKGTLE-----------------YGQGLMVVAKKPCLHPGDMRVLRA 609
I ++G D G L+ Y +G +++ + P +HPGD+++ RA
Sbjct: 648 PIPGAYTLVGVADVHGYLKEWEIFACIKAHDSDEVIYLEGDILIPRSPSIHPGDVQIARA 707
Query: 610 VDVP------ALHHMVDCVLFPAKG 628
+ P A + + V+F +G
Sbjct: 708 IGRPRPGSPFAKEPLANTVVFSVRG 732
>gi|402594185|gb|EJW88111.1| hypothetical protein WUBG_00980 [Wuchereria bancrofti]
Length = 902
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 101/406 (24%), Positives = 155/406 (38%), Gaps = 90/406 (22%)
Query: 262 DGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLS 321
D G V K ++TP+++ PE+ + NRV+R + + D+ LR+ F D+D L +
Sbjct: 466 DEGFQRVRKAVITPTRMLLVVPELLMGNRVLREFDESGDSALRIQFRDDDGAHLRRSRAG 525
Query: 322 PQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAA 381
I T + + L G+ I D+ F LA SNSQ R+N + F +
Sbjct: 526 LYIIETT----------IHNCLLRGVHISDRHFVYLASSNSQMRDNGCYFFNDGVDGKVK 575
Query: 382 DIRERMGDFREIKNVTKYAARLGQSFASSREA-------------------------LHV 416
IR+++G F + N+ K +R+GQ F S+E+
Sbjct: 576 KIRDKLGKF-DHTNIPKLMSRMGQCFTQSKESDVTLRRRKYNKTYDVIGGKDSCGEPFIF 634
Query: 417 DSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYKVTL--------------RNNMFK 462
+GK+S + AE +A G PS FQ RY G K L RN +
Sbjct: 635 SDGVGKLSEDFAEQIANDLGLGKCVPSCFQFRYRGLKGVLSVDPALRQRRLWAERNGLED 694
Query: 463 YKSES---TSLDILANSKYQREGVARLRLDNV-------FERKQREVVARLDAI------ 506
+++ LDIL + R + + F R ++ LD +
Sbjct: 695 KHAKTEKVNDLDILFRPSQDKFHAPRKEIIEIVKYSCPTFVYLNRPLINILDQVSDMQGF 754
Query: 507 ------------LTDSSKVQEALELMSSAENTNVLKEL---LNCGYKPDAEPFLSMMPQT 551
L D ++ + LMS L E +N Y A F
Sbjct: 755 DVHSRIVNRIHGLLDRQLLKLSDALMSEDRCRERLAEFPRRINVQYLSLARGFTLTQEPF 814
Query: 552 FHASNLLELR-------TRARIFIQN--GQAMMGCLDEKGTLEYGQ 588
FH + +R ++ I I G+ M G LDE G L+YGQ
Sbjct: 815 FHGLLIASVRFALQKQLSKEHIQIPTNLGRTMFGILDETGLLQYGQ 860
>gi|361130100|gb|EHL01954.1| putative RNA-dependent RNA polymerase 2 [Glarea lozoyensis 74030]
Length = 263
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 112/260 (43%), Gaps = 74/260 (28%)
Query: 421 GKISAELAETVAKKCGYAI----YTPSAFQIRYGGYKVTLRNNMFKYKSESTSLDILANS 476
G IS LA +++ A YTPS FQIRY GYK
Sbjct: 26 GLISKHLARELSRVLRVAFRNTRYTPSVFQIRYRGYK----------------------- 62
Query: 477 KYQREGVARLRLDNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNCG 536
GV L LD E++ A ++ + +++L G
Sbjct: 63 -----GV--LMLDPGMEKQT------------------SAFRFLTYTNKPELAEKVLIDG 97
Query: 537 YKPDAEPFLSMMPQTFHASNLLELR--TRARIFIQNGQAMMGCLDEKGTLEYGQ------ 588
++ +P L+ + + + ++ R R RI I + + G D G L+ G+
Sbjct: 98 FE-TVQPTLTKLVNSEY-DRMINKRDEQRCRILIPKSRLLFGICDAWGVLKEGECAVKVT 155
Query: 589 -----------GL-MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNEC 636
G+ ++V + PCLHPGD++ +AV+ L H+VDC++FP +G RP +
Sbjct: 156 MDGDGQPYTLKGMDVLVTRNPCLHPGDLQKFKAVERDELAHLVDCIVFPTRGARPAADLM 215
Query: 637 SGSDQDGEIYFVCWDHDRIP 656
SG D DG+ +FVCWD D IP
Sbjct: 216 SGGDLDGDTFFVCWDSDLIP 235
>gi|393247227|gb|EJD54735.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 1217
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 106/252 (42%), Gaps = 38/252 (15%)
Query: 560 LRTRARIFIQNGQAMMGCLDEKGTLEYGQ-----------------GLMVVAKKPCLHPG 602
L+ R RI + + ++G D G LE G+ G + V + P HPG
Sbjct: 751 LKFRGRIPVPDSWTLVGVPDHHGILEEGEVLVGIMDGDPLRLRYLKGGVTVTRSPVCHPG 810
Query: 603 DMRVLRAVDVP------ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIP 656
D+ V+RA+ P L +C++F KG R + G D DG+ Y V P
Sbjct: 811 DVMVMRAIGPPRAGSAFELLRPKNCIVFSTKGSRSPVSCLGGGDYDGDEYVVMKPAYMRP 870
Query: 657 PLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSN 716
P P Y +P + + R ED+ + D+I ND L I + A P
Sbjct: 871 PEPAAPAMYKNSPRQDIGRRYRKEDLLKVVPDFINNDQLPRIAATWLRIADISPQGVYDP 930
Query: 717 RCPDLVKLSSIVGDFSKTGVA---ATIPSRLRVKIYPDF------MEKQDKTW----YES 763
RC L L SI DF KTG+ A IP ++PD+ +K++ Y S
Sbjct: 931 RCLKLSALHSIAVDFPKTGIPVKHADIPQ--APNMFPDWSMSELGAADHNKSFMDRIYPS 988
Query: 764 QHIVGNLYREVN 775
+G+LYR ++
Sbjct: 989 DRALGHLYRAIS 1000
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 78/148 (52%), Gaps = 16/148 (10%)
Query: 271 ILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGE 330
+ V+P+ V GP NRV+ Y +NF+R++FVD D G+ + P +++
Sbjct: 397 VSVSPANVSIIGPIPDDLNRVLYQYRAYHENFIRVAFVDND-GQPFR--YDPDVNT---- 449
Query: 331 RRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQEREN--TLWMFASRPEL-----TAADI 383
+ + VL LR+G+ +G + F+ LA+S S +++ +W+ + + +A+ I
Sbjct: 450 -QALVDAHVLPILRDGLTLGGRLFKFLAYSQSGLKQHWEQVWLVHTFTDALGHTHSASTI 508
Query: 384 RERMGDF-REIKNVTKYAARLGQSFASS 410
R +G F ++ + + AR+ +F+++
Sbjct: 509 RASLGTFTKDERCPARVGARMSLAFSAT 536
>gi|290976086|ref|XP_002670772.1| predicted protein [Naegleria gruberi]
gi|284084334|gb|EFC38028.1| predicted protein [Naegleria gruberi]
Length = 1384
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 64/103 (62%), Gaps = 6/103 (5%)
Query: 564 ARIFIQNGQAMMGCLDEKGTLEYGQGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVL 623
+IFIQ + L++ + ++V K+PCLH GD+R L AV++P L+ + D ++
Sbjct: 607 GQIFIQ-----VSSLNDPKKKNVIENTVIVTKEPCLHRGDLRKLEAVNIPELNFLYDVIV 661
Query: 624 FPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPL-QFQPTAY 665
FP KG RP TN +GSD DG+ YF CWD++ + L +F P ++
Sbjct: 662 FPTKGSRPITNMIAGSDLDGDQYFACWDNELVESLVEFDPGSF 704
>gi|449550168|gb|EMD41133.1| hypothetical protein CERSUDRAFT_111700, partial [Ceriporiopsis
subvermispora B]
Length = 595
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 110/460 (23%), Positives = 176/460 (38%), Gaps = 94/460 (20%)
Query: 343 LRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREI---KNVTKY 399
+ G+ + ++ F+ + +E + F T ++E+ GD E+ KY
Sbjct: 65 VHEGVTVASARYAFFGFTENHVKEGRVICFREDESWTVRHVKEQFGDLDEVYQKHGYGKY 124
Query: 400 AARLGQSFASSREALHVDSN----IGKISAELAETVAKKCG-----------YAIYTP-- 442
AARLG SF+S+ ++L V + + A CG +A P
Sbjct: 125 AARLGLSFSSTVQSLDVAPEEALEVPDLRAPDGSLHTDGCGMICDSFAAEICHAHELPAD 184
Query: 443 -SAFQIRYGGYKVTL----------------------------RNNMFKYKSESTSLDIL 473
+ FQ+R GG K L R +M KY T+L++
Sbjct: 185 TTVFQVRRGGIKGLLVRYPDDKFAELCAKHRGIPTPPSIKMAYRPSMLKYSGGPTALEL- 243
Query: 474 ANSKYQREGVARLRLDNV------------FERKQREVVARLDAILTDSSKVQEAL--EL 519
N + ARL + FE+ +E + + I D L EL
Sbjct: 244 -NDCSRCPTSARLNAQFIIMLLTLGINIETFEKMLKEHLDIIGCITHDRDVALRYLKGEL 302
Query: 520 MSSAENT---NVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMG 576
+S +T +V LL Y +EP++ + F A L + + ++ + G
Sbjct: 303 DASDHDTFGQDVYALLL--AYHDLSEPYVEWKLKQFQALQYKSLYKKLNLRVEESCYVYG 360
Query: 577 CLDEKGTLEYGQ-------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVL 623
+DE G LE + G ++VA+ P PGD R LRAV P L H C++
Sbjct: 361 VVDEDGILEGDEVFINLPGRTGVVLGNVLVARNPSYSPGDFRKLRAVHDPRLKHHKHCIV 420
Query: 624 FPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQP---------TAYTPAPEKILA 674
F K + + D DG+ YFV WD IP P T + +P +I
Sbjct: 421 FSRKASHSIPDSMASGDLDGDEYFVTWDPTLIPSHMATPHQRALPASATRASVSPTRI-T 479
Query: 675 RDVTIEDVE-EYFADYIVNDSLGIICNAHVVYAYSEPDKA 713
R T+E+ + F + + LG + N+ + A + P A
Sbjct: 480 RQCTLEEAAIDTFIENAFSRLLGKMANSWSILAEATPQLA 519
>gi|443927204|gb|ELU45719.1| RNA-directed RNA polymerase [Rhizoctonia solani AG-1 IA]
Length = 1713
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 75/147 (51%), Gaps = 20/147 (13%)
Query: 561 RTRARIFIQNGQAMMGCLDEKGTLEYGQ------------------GLMVVAKKPCLHPG 602
+ R+RIF+ + + G D G LE G+ LMVV + PCLHPG
Sbjct: 370 KDRSRIFLLQSRFLFGVCDPYGLLEEGEVHVRIMEPRKGATTLSNIDLMVV-RNPCLHPG 428
Query: 603 DMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQP 662
D+ LRAV L H+VDC++F KG+R SG D DG+ + V WD D +P Q
Sbjct: 429 DILKLRAVHHTGLDHLVDCIVFSGKGKRAAPAMSSGGDLDGDRFTVVWDPDIVPRTIAQS 488
Query: 663 TAYTPAPEKILARDVTIEDVEEYFADY 689
Y A ++ R +T +D+ +FA+Y
Sbjct: 489 YDYPAAKTQVNLR-ITRKDLATHFANY 514
Score = 39.7 bits (91), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 24/129 (18%)
Query: 343 LRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAAR 402
L G+ I +++ SNSQ R + W+ A+ + E++ D +I N+ K A R
Sbjct: 92 LTKGLFINGQQYRFYHHSNSQLRSRSCWLRAASSDEELDRRIEKLCDVSKINNIAKRAKR 151
Query: 403 LGQSFASSR------EALHVD------------SNIGKISAELAETVAKKC-----GYAI 439
+G F+ + AL D G IS + +AKK GY
Sbjct: 152 IGLLFSGAEIDWDLNPALTKDIPDITIAEELFSDGCGLISRRFMQLLAKKKKIVHRGYR- 210
Query: 440 YTPSAFQIR 448
YTPS QIR
Sbjct: 211 YTPSVIQIR 219
>gi|409046080|gb|EKM55560.1| hypothetical protein PHACADRAFT_173707 [Phanerochaete carnosa
HHB-10118-sp]
Length = 876
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 129/531 (24%), Positives = 207/531 (38%), Gaps = 122/531 (22%)
Query: 211 CNSDLNQDGKHALEMLFHLRECCYDPVSWLRE-------------QYRKHVSSGQFPTSP 257
C ++D K+ + HL DP SW R + RK + + SP
Sbjct: 345 CRMAADKDAKYLASFVRHLAREARDP-SWYRGAANPKDALKELFIRCRKEFTPPRDTPSP 403
Query: 258 AVALDGGL--IYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKL 315
+G +VTPS V GP + NRV+R Y FLR+ F DE +
Sbjct: 404 DDIANGTRPEFECFHAIVTPSTVRLEGPFLEQCNRVIRKYARNTSCFLRVRFADEARLQF 463
Query: 316 YSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASR 375
S + R I+ R + LR G+VI + F L ++ + +E+T W S
Sbjct: 464 R--------SEREVDCRAFIHNRFGNVLRRGLVIAGRHFHFLGYTQASLKEHTAWFVRSF 515
Query: 376 PE-------------LTAADIRERMGDF-------REIKNVTKYAARLGQSFASSREALH 415
+ +TA I +G F I +Y AR Q F+S+ ++
Sbjct: 516 KQPAVTSDGTSCEETVTADTIIAGLGVFDGILYDPELIMCPARYGARQAQCFSSTSASVT 575
Query: 416 VD--------------------SNIGKISAEL-AETVAKKCGYAIYTPSA-----FQIR- 448
+D +G IS L AE + C + PS FQIR
Sbjct: 576 IDLDDIEVVEDIVDADGERSFTDGVGTISPNLAAEIWTRLCAASGRPPSERGPRRFQIRI 635
Query: 449 ------------YGGYKVTLRNNMFK-YKSESTSLDI----LANSKY--QREGVARL-RL 488
G K+ LR +M K Y ++S +L+I + SK+ R V L L
Sbjct: 636 QGAKGMVSVDHLLQGRKLCLRPSMIKFYAADSRTLEIADAFVKPSKFYLNRPLVMLLEEL 695
Query: 489 D-----NVFERKQREVVARLDAI---LTDSSKVQEALELMSSAENTNVLKELLNCGYKPD 540
D + + Q VV + +A L ++ + + L + + +NV +EL + G
Sbjct: 696 DILGGYDFLKFLQESVVEKTEAAVQSLYAAADLFDDFNLGRTYDLSNVFRELHHMGIATL 755
Query: 541 AEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ------------ 588
+ F + L +L+ RARI + +G ++G D G LE G+
Sbjct: 756 DDTFSQQVLCFGRHHVLRDLKYRARIPVPSGWNLVGVADIHGCLEEGEIFACVIPYEGQE 815
Query: 589 -----GLMVVAKKPCLHPGDMRVLRAVDVPA------LHHMVDCVLFPAKG 628
G ++++ P +H GD++V+RA+ P + + + V+F KG
Sbjct: 816 PIYLHGPTLISRSPVIHRGDVQVVRAIGPPPPGSPFEIEPLHNSVVFSTKG 866
>gi|241636823|ref|XP_002410661.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
gi|215503493|gb|EEC12987.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
Length = 385
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 116/232 (50%), Gaps = 11/232 (4%)
Query: 638 GSDQDGEIYFVCWDHDRI-PPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLG 696
GSD DG+ Y V W+ D P P ++ + A + E + ++ +YI+ND++G
Sbjct: 12 GSDLDGDEYIVIWEPDLFFPGSNKTPMTFSDSSSVGSADENLEEGMIKFICNYIINDNVG 71
Query: 697 IICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEK- 755
I+ NAH+ ++ D S C + K S DF+KTG+A+ + + +YPDFMEK
Sbjct: 72 IMSNAHLAWSDQLEDGIFSPLCLGVAKKISTCVDFAKTGLASCLDRHEKPLLYPDFMEKG 131
Query: 756 QDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYD---TDMEVNGFKEVAMQF 812
K Y S+ ++G+LYR + T A+ G + D T E G+K+ Q
Sbjct: 132 GSKDTYRSKRVLGHLYRLHRSLQAVINT-DFMARTGQLAEGDGHCTLFEYPGWKD--HQE 188
Query: 813 DGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMA---KSFDKKRDLEAI 861
K Y ++ ++ YG+ +E E++S I+ ++ KS + K ++A+
Sbjct: 189 VAEKALAAYTVQMSRILHQYGVGSEGEVVSGIIVNVSDYNKSNEDKNSVKAL 240
>gi|397621217|gb|EJK66181.1| hypothetical protein THAOC_12913, partial [Thalassiosira oceanica]
Length = 906
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 84/357 (23%), Positives = 152/357 (42%), Gaps = 68/357 (19%)
Query: 266 IYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEI----DNFLRLSFVDEDLGKLYSTVLS 321
+ + ++L++P ++ + +SNR VR + + F+RL+ DE+ KL+ LS
Sbjct: 561 VSLPRVLLSPLRLSITAFQSEMSNRFVRLFINRHKFSESAFVRLTIGDENGDKLFGGELS 620
Query: 322 PQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAA 381
Q+ ER+ + G+ +G K + LA+S+SQ +E ++W+ + +
Sbjct: 621 RQVE-----------ERIRQLILQGVRLGGKTYHFLAYSSSQLKEQSMWLVCAERGWSVD 669
Query: 382 DIRERMGDFREIKNVTKYAARLGQSFASS----------REALHVDSNIGKISAELAETV 431
+R+ MGDF ++ +KYAAR+GQ F+++ + L V ++ I + + V
Sbjct: 670 SMRDLMGDFSMCESPSKYAARVGQCFSTTVTVSTRSHRRNDGLRVKDDLPDIPSSIESLV 729
Query: 432 -AKKCG-------------YAIYTP------SAFQIRYGGYKVTLRNNMFKY-------- 463
+ CG Y P SA Q R GG K L F
Sbjct: 730 HSDGCGLIRHEVLLKSVLPLVPYAPRFKSDISAIQFRCGGAKGVLVGWDFNTLGIQNYDV 789
Query: 464 ---KSESTSLDILANSKYQREGVARLRL----------DNVFERKQREVVARLDAILTDS 510
S+ S+ + + G+ ++ VF Q E+++ L+ +L D+
Sbjct: 790 CLRPSQGVSICMRGIGGTHQLGIDWRQVILLGTHLGISGEVFLSLQDEMMSSLNRMLVDA 849
Query: 511 SKVQEALELMSS--AENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRAR 565
+ + + AE L ++L G KP +PFL + +L+ LR +AR
Sbjct: 850 RFAAQYVPFIGGIDAEIVTSLCDMLASGLKPSRDPFLYSCLHATRSHHLMGLRKKAR 906
>gi|290993091|ref|XP_002679167.1| RNA dependent RNA polymerase [Naegleria gruberi]
gi|284092782|gb|EFC46423.1| RNA dependent RNA polymerase [Naegleria gruberi]
Length = 1235
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 112/271 (41%), Gaps = 76/271 (28%)
Query: 440 YTPSAFQIRYGGYK----------------VTLRNNMFKYKSES------TSLDILANSK 477
Y PSAFQIR+ G K + LR +M K K+ ++L I+ +S
Sbjct: 404 YIPSAFQIRFRGAKGMLVVNTETFEKYRVHIVLRESMVKCKTNEKVDQSFSTLQIVGHSS 463
Query: 478 -----------------YQREGVARLRLDNVFERKQREVVARLDAILTDSSKVQEALELM 520
G R R V E V LD + + ++V A + M
Sbjct: 464 PCELTRVNSTIMHLLSGCDSNGEVRKR---VLEMASAHVQNSLDKYVHEDTEVI-ARQYM 519
Query: 521 SSAE--NTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCL 578
+ NVL N G+ A P+ S++ T +I N + + G +
Sbjct: 520 KDNNLISLNVLSTTKNKGFAFLAGPYKSLI-------------TSLKIPFSNSRRLYGVV 566
Query: 579 DEKGTLEYG------------------QGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVD 620
D L G Q +V+ K+PCLH GD+R ++AV P L H+ D
Sbjct: 567 DPYEVLNEGEVFVQISSFKNPSHKQVLQKEIVLTKEPCLHRGDLRKIKAVYYPKLSHLCD 626
Query: 621 CVLFPAKGERPHTNECSGSDQDGEIYFVCWD 651
++F +KG+RP N SGSD DG+ +FVCWD
Sbjct: 627 VIVFSSKGKRPVPNMISGSDLDGDQFFVCWD 657
>gi|268565349|ref|XP_002639417.1| Hypothetical protein CBG04006 [Caenorhabditis briggsae]
Length = 797
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 130/280 (46%), Gaps = 36/280 (12%)
Query: 592 VVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWD 651
+V K P + GD+R+ AVD+P LHH+ D ++FP G R +E +GSD DG+ Y V WD
Sbjct: 1 MVTKFPTMCAGDIRMYEAVDIPELHHLTDVIVFPQSGPRSQPDEMAGSDLDGDEYAVIWD 60
Query: 652 HDRIPPLQFQPTAYTPA-------PEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVV 704
P L FQ A PA K + ++FA + + +G+ H+
Sbjct: 61 ----PILFFQKNA--PAFGYCSEKKNKQFTLGEMDHKMNDFFALSMRQEDVGVTAINHL- 113
Query: 705 YAYSEPDKAMSNRCPDLVKLSSIVGDFSKTG---VAATIPSRL-----------RVKIYP 750
S+ S+ LV+ +++ DF+K+G + T R+ R + P
Sbjct: 114 -HQSDQFGIDSDVANSLVEKNAMALDFAKSGDPPLPLTNEGRINPETGLWEPPERSERRP 172
Query: 751 DFMEKQD--KTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEV 808
DF + + Y S ++G L+RE+ I + S +++ D + G+++
Sbjct: 173 DFSQSRHAGSASYASSRLLGTLHRELRSI---NDVVMSSSEKQVPVVIDDLLIWEGWEK- 228
Query: 809 AMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEM 848
+ + Y+ +L ++M+ +G+ TEAE+ S C ++
Sbjct: 229 -HKDNATLQMIRYNGQLRSIMETFGVATEAEVFSGCFRDI 267
>gi|302678369|ref|XP_003028867.1| hypothetical protein SCHCODRAFT_236896 [Schizophyllum commune H4-8]
gi|300102556|gb|EFI93964.1| hypothetical protein SCHCODRAFT_236896 [Schizophyllum commune H4-8]
Length = 711
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 94/378 (24%), Positives = 157/378 (41%), Gaps = 74/378 (19%)
Query: 353 KFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSRE 412
K+ L F+ SQ ++ T + T + +G+ + I + + A + F ++
Sbjct: 85 KYSWLGFTESQLKDGTFLLLREDEHWTVDRFLDALGNVKSIPD--ELVATI-PDFQATDG 141
Query: 413 ALHVDSNIGKISAELAETVAKKCGYAIYTP---SAFQIRYGG------------------ 451
L D + ++ A + A+ P + FQIR GG
Sbjct: 142 TLFTDG-----CGLIRDSCAAEVCSALEIPEDTTVFQIRRGGVKGLLVRYPDVVFDRICR 196
Query: 452 -------YKVTLRNNMFKYKSESTSLDILANSKYQREGVARL-------------RLDNV 491
K+ LR +M KY T L+I +S +R ARL RL+
Sbjct: 197 DAGRRGPMKIALRPSMRKYPGGPTVLEI--HSVARRPRSARLNRHFIILLLTLGVRLE-A 253
Query: 492 FERKQREVVARLDAILTDSSKVQEALELMSSAENTNV---LKELLNCGYKPDAEPFLSMM 548
FE R + +D I+T + +ALE A+ L +LL G++ +EP + +
Sbjct: 254 FESLLRANLEFIDLIMTSRQRALDALEAELDADGAGFDQELHDLLLAGFQL-SEPHVRCL 312
Query: 549 PQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ-----------GLMVVAKKP 597
+ +L LR + I ++N + G DE G L G+ G ++V + P
Sbjct: 313 LERLQKRSLDVLRKKLNIRVKNSFYLFGVCDELGVLREGEVYINVAGDVKLGTVLVGRNP 372
Query: 598 CLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPP 657
+RVL+AV+ P L H+ +C++F + G R T++ G D DG+ ++V + IPP
Sbjct: 373 AYSTSVLRVLQAVNRPGLSHLRNCIVFASGGARSETSKMQG-DVDGDNFWVTTEPSLIPP 431
Query: 658 LQ------FQPTAYTPAP 669
QP + PAP
Sbjct: 432 RMAEPPPFAQPVSTAPAP 449
>gi|242211203|ref|XP_002471441.1| predicted protein [Postia placenta Mad-698-R]
gi|220729496|gb|EED83369.1| predicted protein [Postia placenta Mad-698-R]
Length = 865
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 87/189 (46%), Gaps = 22/189 (11%)
Query: 563 RARIFIQNGQAMMGCLDEKGTLEYGQGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCV 622
R+R+ I + + G D G L G+ +H L AVD P L H+VDCV
Sbjct: 139 RSRMIILKSRLLFGVCDPYGVLREGE----------VH------LWAVDHPKLAHLVDCV 182
Query: 623 LFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDV 682
+F +KG+R + SG D DG+ + V WD D +P + Y PAP++ + VT D+
Sbjct: 183 VFSSKGKRAAPSMSSGGDLDGDRFLVMWDPDLVPKKVAESYTY-PAPKERVGTQVTRADL 241
Query: 683 EEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPS 742
++FA Y +L I H + P AM + C +L L S D G IP
Sbjct: 242 AKHFAAYNTM-ALAKITALHARWVRCSPKGAMGDECQELNALHSQAVD----GAPIKIPE 296
Query: 743 RLRVKIYPD 751
RL PD
Sbjct: 297 RLLSPPDPD 305
>gi|156374435|ref|XP_001629812.1| predicted protein [Nematostella vectensis]
gi|156216821|gb|EDO37749.1| predicted protein [Nematostella vectensis]
Length = 110
Score = 86.7 bits (213), Expect = 5e-14, Method: Composition-based stats.
Identities = 40/110 (36%), Positives = 59/110 (53%), Gaps = 19/110 (17%)
Query: 561 RTRARIFIQNGQAMMGCLDEKGTLEYGQ------------------GLMVVAKKPCLHPG 602
+TR R+ + + + G D L G+ + V + PC HPG
Sbjct: 1 KTRLRVLVPKSRMVFGVCDPYEVLRQGECYFRPSIFDEDEGDFQAANKVAVIRNPCYHPG 60
Query: 603 DMRVLRAV-DVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWD 651
D+RVL+ V + P L+H+ DC++FP +G RPH ECSG+D DG+ +FV WD
Sbjct: 61 DVRVLKLVRNKPELNHLRDCIVFPVRGRRPHALECSGADMDGDKFFVTWD 110
>gi|156390354|ref|XP_001635236.1| predicted protein [Nematostella vectensis]
gi|156222327|gb|EDO43173.1| predicted protein [Nematostella vectensis]
Length = 127
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 20/110 (18%)
Query: 562 TRARIFIQNGQAMMGCLDEKGTLEYGQGL-------------------MVVAKKPCLHPG 602
++ RI + N + + G D G LEYGQ + ++V + PC +PG
Sbjct: 18 SKLRILVPNSRVVFGVCDPFGELEYGQCVFHPTLYDEVRIAEYQVATEVMVVRNPCYYPG 77
Query: 603 DMRVLRAV-DVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWD 651
D+RVL+ V ++P ++ DC++FP KG RPH +E SG D DG+ +FV WD
Sbjct: 78 DIRVLKLVKNLPQYAYLNDCIVFPTKGSRPHADESSGGDLDGDEFFVSWD 127
>gi|290988183|ref|XP_002676801.1| predicted protein [Naegleria gruberi]
gi|284090405|gb|EFC44057.1| predicted protein [Naegleria gruberi]
Length = 1650
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 111/481 (23%), Positives = 193/481 (40%), Gaps = 75/481 (15%)
Query: 338 RVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERM---GDFREIK 394
+++ + I K++ + S S R + ++ F + +++ E M G +
Sbjct: 298 KIIDVVPASIECCGKEYRPVGGSLSMLRSDYVYFFDTTAMPACSEVDELMQIFGTYDSNL 357
Query: 395 NVTKYAARLGQSFASSREA------------LHVDSN-----IGKISAELAETVAKKCGY 437
N K +R +F +++E L +D + IGKIS +A+ ++ + G
Sbjct: 358 NPFKLVSRHALNFTTTKETCTINKWKCVKDELAIDGSEMTDGIGKISQSIAQQISNQLG- 416
Query: 438 AIYTPSAFQIRYGGYK----------------VTLRNNMFKY--KSESTSLDILANSKYQ 479
+ P+A QIR+ G+K V LR +M K+ K E +++++ + +
Sbjct: 417 LVSVPTALQIRFLGFKGVLSVLPDEDLGDGMDVILRESMCKFNGKEELNKIELVSCTTAR 476
Query: 480 REGVAR----LRLDNVFERKQREVVARLDAILTDSSKVQEALELMSSAENT--NVLKELL 533
+ L L + K+ + LD S K+ + + + L +
Sbjct: 477 KPAYLNKQIILLLTTLGITKETFLSIFLDYFKDLSEKITSPKYFLKVLKENCMDTLPAIQ 536
Query: 534 NCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL-------EY 586
+ PD E FL + + + +++T+A I I+ M +DE L +
Sbjct: 537 SLNEMPDDE-FLQYLARYLIYDEIKKVQTKAMIPIEKAVIAMSIVDEYKQLKENEVMVQL 595
Query: 587 GQGLMV-------VAKKPCLHPGDMRVLRAVDVPALHHMVD----CVLFPAKGERPHTNE 635
G G + + + PCLHP D++ D L ++FP +G
Sbjct: 596 GDGNYIEDGTQVFICRNPCLHPSDIQTFTCRDNSLLRSKYRPSNAAIIFPTQG----YTS 651
Query: 636 CSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSL 695
D DG+ FVCWD IP Q + +P + T E E + + N L
Sbjct: 652 IKICDFDGDRVFVCWDSRLIPD---QVSNLSPLTHDNEPMESTTEH-SEVLSKILENGKL 707
Query: 696 -GIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFME 754
G I +A V SE A S+R +L L DF K G ++P+ + IYPDFME
Sbjct: 708 LGKISDAWVAIVDSE--GADSDRALELADLFVKAVDFPKNGKQISLPNWFKDIIYPDFME 765
Query: 755 K 755
+
Sbjct: 766 R 766
>gi|224148789|ref|XP_002336714.1| hypothetical protein POPTRDRAFT_593566 [Populus trichocarpa]
gi|222836572|gb|EEE74979.1| hypothetical protein POPTRDRAFT_593566 [Populus trichocarpa]
Length = 196
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 698 ICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQD 757
I +HVV+A A+ +C L +L++ DF KTG ++PS L+ KIYPDFM K++
Sbjct: 25 IPKSHVVHADLSEYGALDEKCLTLAELAATSVDFPKTGKIVSMPSDLKPKIYPDFMGKEE 84
Query: 758 KTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQF------YDTDMEVNGFKEVAMQ 811
Y+S+ I+G LYR++ S + F YD D+EV G +
Sbjct: 85 HQSYKSKKILGRLYRQIKDAYDDDDVAAS----SELNFVRGDIPYDLDLEVPGVTDFIS- 139
Query: 812 FDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKR 856
D + + YD +L L+ Y +K E E+++ + M K +K+
Sbjct: 140 -DAWDQKCSYDGQLNGLLAQYKVKREEEVVTWHVWSMPKGSSRKQ 183
>gi|299740358|ref|XP_001838853.2| RNA-directed RNA polymerase [Coprinopsis cinerea okayama7#130]
gi|298404206|gb|EAU82968.2| RNA-directed RNA polymerase [Coprinopsis cinerea okayama7#130]
Length = 1548
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 72/143 (50%), Gaps = 10/143 (6%)
Query: 607 LRAVDVPALHHMVDCVLFPA----KGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQP 662
LRAVD P L H+VDC++F + G +P + SG D DG+ +FVCWD D +PP +P
Sbjct: 309 LRAVDHPQLSHLVDCLVFASAVRRPGSKPAPSLSSGGDLDGDEFFVCWDQDLVPPRVSEP 368
Query: 663 TAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLV 722
Y P E + VT D+ +FA Y + + + H +A S P A+ C +L
Sbjct: 369 YDYPPNKEP-RPKAVTRADLANHFASY-TSSGVAKVSALHNKWAISSPLGALCVECQELN 426
Query: 723 KLSSIVGDFSKTGVAATIPSRLR 745
L S D G IP RL+
Sbjct: 427 ALHSQSVD----GAPIKIPERLQ 445
Score = 46.2 bits (108), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 55/136 (40%), Gaps = 22/136 (16%)
Query: 343 LRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAAR 402
+ G+ + ++ SNSQ R + ++ + + D +GDF I N+ K A R
Sbjct: 42 FKAGVFLNGVQYRFYHHSNSQLRGRSCFLREANSDKELDDRIYALGDFSRINNIAKRAKR 101
Query: 403 LGQSFASSREALHVDSNI------------------GKISAELAETVAKKCGYAI----Y 440
+G F+S+ ++D G IS L + +AK Y
Sbjct: 102 IGLLFSSAEVDFNLDPTFVEDIGDIEIGGEVFSDGCGLISKSLTKQIAKAKKLMFRGIRY 161
Query: 441 TPSAFQIRYGGYKVTL 456
TP QIRY GYK L
Sbjct: 162 TPVVIQIRYEGYKGVL 177
>gi|402579794|gb|EJW73745.1| hypothetical protein WUBG_15348 [Wuchereria bancrofti]
Length = 203
Score = 82.8 bits (203), Expect = 8e-13, Method: Composition-based stats.
Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 35/182 (19%)
Query: 490 NVFERKQREVVARLDAILT-------DSSKVQEALELMSSAENTNVLKELLNCGYKPDAE 542
+V ER ++ + LD LT + K +E L + NV + L G+ E
Sbjct: 15 SVHERIKKRIHDLLDVHLTQLADMLMNEDKCRERLNELPL--RVNVSRLTLARGFALTQE 72
Query: 543 PFLSMMPQTFHASNLLELRTRARIFI--QNGQAMMGCLDEKGTLEYGQ------------ 588
PF + + L +L + +I I G++M G +DE G L++GQ
Sbjct: 73 PFFRSLLRAHIKCTLKKLIAKIQIQIPPHLGRSMFGVMDETGQLQWGQIFVQCTRNIWLK 132
Query: 589 ------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNEC 636
G +++ K PC+ GD+RV AVD+P LHH+VD V+FP G RPH +E
Sbjct: 133 TPSQSAAKIILKGKVMLTKNPCIVAGDVRVFEAVDIPELHHLVDVVVFPQHGPRPHPDEM 192
Query: 637 SG 638
+G
Sbjct: 193 AG 194
>gi|290988454|ref|XP_002676936.1| predicted protein [Naegleria gruberi]
gi|284090541|gb|EFC44192.1| predicted protein [Naegleria gruberi]
Length = 1745
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 94/202 (46%), Gaps = 21/202 (10%)
Query: 580 EKGTLEYGQGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGE-RPHTNECSG 638
E GTL+ +G + + K+PCLH GD+R+L+A + +L ++ + ++FP KGE RP N +G
Sbjct: 731 EDGTLKTLEGTIAITKEPCLHRGDLRLLKAKKIESLEYLSEVIVFPIKGEKRPIPNMITG 790
Query: 639 SDQDGEIYFVCWDHDRIPPL--QFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLG 696
SD DG+ Y V WD + QF+P + D IE + F + D +G
Sbjct: 791 SDLDGDKYLVIWDEPLVSSFVQQFEPGNF----------DEEIEGEKRNFEPDVFKDWIG 840
Query: 697 IICNAHVVYAY----SEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRL--RVKIYP 750
+ + Y Y E K M R D+V ++ KT A + + YP
Sbjct: 841 LRHSYVDSYGYEWSKGENWKTMQ-RLSDIVNMAVDAPKKGKTFKAGAMEKDIVRNFPKYP 899
Query: 751 DFMEKQDKTWYE-SQHIVGNLY 771
F + K S +VG +Y
Sbjct: 900 HFHNSKTKEAVRVSTSVVGKMY 921
>gi|405974294|gb|EKC38950.1| Putative RNA-dependent RNA polymerase 1 [Crassostrea gigas]
Length = 299
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 110/248 (44%), Gaps = 46/248 (18%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
V ++TPS+ + R++R Y + D F+ L + D+D K+ + P S
Sbjct: 27 VRMAVLTPSRFILLPNKPVHLTRILRLYNN--DYFILLDYRDDDFDKVCG--IHPYGS-- 80
Query: 328 NGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERM 387
+I + + NG I D+ ++ L SNS+ R ++ W F+S +TA IR+
Sbjct: 81 -----MKIVQDMKRFFINGFEIHDRHYDFLGCSNSELRNHSFWFFSSYDGITAEFIRQNC 135
Query: 388 GDFREIKNVTKYAARLGQSFASS-------------------REALHVDSNIGKISAELA 428
GD + V Y +++G F+ S R L IGKIS LA
Sbjct: 136 GDLSMERCVASYVSKIGLCFSPSLSTLTMEEHQEVRFEEDVRRNGLCFTDGIGKISRRLA 195
Query: 429 ETVAKKCGYAIYTPSAFQIRYGGYK---------------VTLRNNMFKYKSESTSLDIL 473
VAKK PS FQI YGG K + +R++M K++S S SL++L
Sbjct: 196 AKVAKKMNLNT-VPSVFQICYGGCKGMIALDPSLGENREILVIRHSMKKFESSSKSLEVL 254
Query: 474 ANSKYQRE 481
S+ R+
Sbjct: 255 QVSRPARK 262
>gi|391343492|ref|XP_003746043.1| PREDICTED: uncharacterized protein LOC100902078 [Metaseiulus
occidentalis]
Length = 1371
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 155/695 (22%), Positives = 267/695 (38%), Gaps = 108/695 (15%)
Query: 265 LIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQI 324
L V + +V PSK P + + ++RS E + + D+D +L
Sbjct: 395 LYLVKRAIVCPSKTIVKPPTVVRVSALLRSVDPE--KVMLVDVRDDDGTRLRF------- 445
Query: 325 SSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRP--ELTAAD 382
+T E RT I + ++ GI I K + L S SQ + + W +A T +
Sbjct: 446 -NTQNEARTFIQVSIAEKIKRGIKIAGKTYYFLGNSKSQAEDFSFWAYAIEKGDTDTISS 504
Query: 383 IRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN------------------IGKIS 424
+RER+G N+ + A FA + A+ +D + IG+IS
Sbjct: 505 VRERLGI---TGNLARRIAVQDLVFAEALGAVSIDPSWVSEESEDVPAASDFKHGIGRIS 561
Query: 425 AELAETVAKKCGYAIYTPSAFQIRYGGYKVTL-------------RNNMFKYKSESTSLD 471
TV + C ++ SA ++ +GG + TL R + +SE ++L
Sbjct: 562 EAALRTVVENCHWSRTLCSAIRVIHGGRRGTLVYDPSLEGSRIIYRKSQTVIRSEDSTLY 621
Query: 472 ILANSKYQREGVARLRLDNVFERKQ--REVVARLDAILTDSSKVQEALELMSSAENTN-- 527
++ S+ + R + + + E + D + + E L L S+
Sbjct: 622 LIGRSEMKNAAFDRTLISTLSSKADGLTEEFSVEDFLTPLYELLTEPLSLYSTGARVKRV 681
Query: 528 ----VLKELLN-----CGYKPDAEPFLSMMPQTFHASNLLELRTRARI--FIQNGQAMMG 576
VL + GY + + Q L LR ++ + N +M
Sbjct: 682 AAEPVLDHIFRKGEDLYGYDKRGD---GLFRQAVRCKALKALRDLKKLKQHMTNAYEIMP 738
Query: 577 CLDEKGTLEYGQ----------------GLMVVAKKPCLHPGDMRVLRAVDVP----ALH 616
+DE G LE G+ G +V+A+K +H + R + AV+ P AL
Sbjct: 739 VVDELGLLEEGEVFIQVSSPGGDLRVLSGDLVLARKDAMHLEEFRRVTAVNRPDVVGALG 798
Query: 617 HMVDCVLFPAK-GERPHTNECSGSDQDGE--IYFVCWDHDRIPPLQFQPTAYTPAPEKIL 673
H+ +CV+ P+K G RP + GE I + D P F+ + +
Sbjct: 799 HLFNCVVLPSKGGSRPLEFLAREASYAGESDIILIASHPDEEPAFLFKRNDPPRSTSIAV 858
Query: 674 ARDVTIE-DVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFS 732
+V D E ++ +Y+ S A S P A S C + ++ +
Sbjct: 859 GSEVDASCDTETHYFNYLAYVSFNDFEEVFCALADSLPQHASSESCIRVGVQRRLLDKYR 918
Query: 733 KTGV-AATIPSRLRVKIYPDFMEK-QDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKE 790
+ G A +P +V +P F+EK D+ Y S +G++YR+ I E
Sbjct: 919 RGGREVAPLP---KVVNFPHFLEKISDRRTYCSARPLGHIYRKGRLIDTEYFEDTQMMTE 975
Query: 791 GAMQFYDTDMEVNG---FKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIME 847
+ ++ V G F E+A + D ++R + L + YGI + E+L+ I
Sbjct: 976 DLT--FQHELRVEGSEAFAEIAAR-DIRQFRGD----LEGIASLYGISVD-EVLTGTIFS 1027
Query: 848 ---MAKSFDKKRDLE-AISFSVRSLRKEARAWFNK 878
S +++ D+E A+ V+ L R F K
Sbjct: 1028 DRGQHSSNERRSDIEAAVKLQVKHLALICRRKFKK 1062
>gi|242053113|ref|XP_002455702.1| hypothetical protein SORBIDRAFT_03g022060 [Sorghum bicolor]
gi|241927677|gb|EES00822.1| hypothetical protein SORBIDRAFT_03g022060 [Sorghum bicolor]
Length = 108
Score = 80.5 bits (197), Expect = 4e-12, Method: Composition-based stats.
Identities = 37/106 (34%), Positives = 64/106 (60%)
Query: 665 YTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKL 724
YT +I+ VT+E+++++F Y+ ND+LG+I H+++A P A + +C L L
Sbjct: 3 YTATRPRIMDHAVTLEEIQKHFDSYMTNDTLGVISTVHLIHADHNPLNAHTPKCLQLAAL 62
Query: 725 SSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNL 770
S+ DF+KTG A + LR + +PDFME+ ++ Y S +++ L
Sbjct: 63 HSMAVDFAKTGPPAEMSLTLRPREFPDFMEQWERPMYVSNNVLDKL 108
>gi|226294787|gb|EEH50207.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 615
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 77/160 (48%), Gaps = 17/160 (10%)
Query: 266 IYVNKIL-----VTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVL 320
I++N IL VTP +Y GP++ NRV+R Y +D+FLR+ FVDE
Sbjct: 411 IHLNNILIHRAQVTPCGIYLYGPQLETKNRVLRIYEANVDHFLRVEFVDES--------G 462
Query: 321 SPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWM---FASRPE 377
P + R L+ GI I +KFE L FS+S R T W F S
Sbjct: 463 DPIRYDSRASVDAIFQSRFKGVLKEGITIAGRKFEFLGFSHSSLRSQTCWFVAPFVSGGT 522
Query: 378 L-TAADIRERMGDFREIKNVTKYAARLGQSFASSREALHV 416
L A I + +G F I + K AAR+GQ+F+ + ++ +
Sbjct: 523 LYNATVIIQNLGRFDHIHSPAKQAARIGQTFSDTLTSIPI 562
>gi|313244084|emb|CBY14941.1| unnamed protein product [Oikopleura dioica]
Length = 784
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 87/189 (46%), Gaps = 15/189 (7%)
Query: 580 EKGTLEYGQGLMVVAKK-PCLHPGDMRVLRAVDVPALHHMVDCVLFPAKG-------ERP 631
E+ L G G V+ K P HPGD RVL+ VP L H+ D ++FP +RP
Sbjct: 586 ERRMLPLGNGAKVLVNKCPTYHPGDFRVLQNTHVPELMHLCDVIVFPVYDKVYNPDLKRP 645
Query: 632 HTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIE-DVEEYFADYI 690
H +E SD DG+ YFV WD IP +P P P+K + ++ E V++ ++
Sbjct: 646 HPHEMHESDLDGDEYFVSWDERLIPEKLEKP---FPCPDKTIGANIKDEITVQDLIREFT 702
Query: 691 VNDSL-GIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIY 749
++ L G I N + +A A SN C L KL + D +K G I L
Sbjct: 703 ASEHLVGRINNLFIDWAKLA--GASSNECRQLAKLFNQSVDTAKHGGKVEISKHLTRGRR 760
Query: 750 PDFMEKQDK 758
P K D+
Sbjct: 761 PTAPWKNDR 769
>gi|242051713|ref|XP_002455002.1| hypothetical protein SORBIDRAFT_03g002800 [Sorghum bicolor]
gi|241926977|gb|EES00122.1| hypothetical protein SORBIDRAFT_03g002800 [Sorghum bicolor]
Length = 1127
Score = 79.3 bits (194), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 104/245 (42%), Gaps = 34/245 (13%)
Query: 564 ARIFIQNGQAMMGCLDEKGTLEYGQ-----------GLMVVAKKPCLHPGDMRVLRAVDV 612
RI I + +MG D GTL+ Q G ++V K P LH GD+ +L A +
Sbjct: 733 GRIPIDDTYYLMGTTDPTGTLKRDQVCIILDNGQLSGKVLVYKHPGLHFGDIHILTATYI 792
Query: 613 PALHHMVD----CVLFPAKGERPHTNECSGSDQDGEIYFVCWDHD--------------R 654
L +V + FP G R +E + SD DG++Y+V + R
Sbjct: 793 DGLEKIVGNSKYAIFFPTCGPRSLADEMANSDFDGDLYWVSRNPQLLEGFTKQRKPWVRR 852
Query: 655 IPPLQFQ---PTAYT-PAPEKILARD-VTIEDVEEYFADYIVNDSLGIICNAHVVYAYSE 709
I P + + P YT P E +L + + Y N L ++
Sbjct: 853 IQPTKTELKKPQDYTGPKLESLLFHEFLRARFTPSYVLGAASNCWLALMDRLLTGGVPKS 912
Query: 710 PDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGN 769
+A+ + DLV + + D K G T+P L+VK YP FME+ +K Y S ++G
Sbjct: 913 ERQAIKKKMLDLVDIYYLALDAPKEGNKITVPGELKVKKYPHFMERDEKKSYTSTSVLGK 972
Query: 770 LYREV 774
+Y EV
Sbjct: 973 IYDEV 977
>gi|170579664|ref|XP_001894930.1| RNA-directed RNA polymerase 1 [Brugia malayi]
gi|158598304|gb|EDP36223.1| RNA-directed RNA polymerase 1, putative [Brugia malayi]
Length = 312
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 95/218 (43%), Gaps = 42/218 (19%)
Query: 264 GLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQ 323
G V K+++TP+++ PE+ + NRV+R++ + + LR+ F D+D L +
Sbjct: 73 GYQRVRKVIITPTRIILVVPELLMGNRVLRTFDKDGNGALRIQFRDDDGTPLRVNTVGLF 132
Query: 324 ISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADI 383
+ T +TL GI IGD+ F L SNSQ R+N + + A I
Sbjct: 133 LIQTT----------TFNTLSRGIYIGDRHFVYLGSSNSQMRDNGCYFYDDGKGGQAHKI 182
Query: 384 RERMGDFREIKNVTKYAARLGQSFASSREALHV----------------DSN-------- 419
RE++G F N+ K +R+GQ F ++ + D+N
Sbjct: 183 REQLGKFDSC-NIPKMMSRMGQCFTQAKRCKVILKRQKYNKTYDIIGGRDTNQASYIFSD 241
Query: 420 -IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYKVTL 456
+GK+S E AE +A G IR+ G K L
Sbjct: 242 GVGKVSKEFAEKIAFDIGLGT------SIRHRGIKGVL 273
>gi|169598368|ref|XP_001792607.1| hypothetical protein SNOG_01986 [Phaeosphaeria nodorum SN15]
gi|111069078|gb|EAT90198.1| hypothetical protein SNOG_01986 [Phaeosphaeria nodorum SN15]
Length = 1428
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 99/228 (43%), Gaps = 37/228 (16%)
Query: 470 LDILANSKYQREGVARL---RLDNVFERKQR----EVVARLDAILTDSSKVQEALELMS- 521
+ IL + Q+ +A+L RLD+ ERKQ + RL +T AL ++
Sbjct: 855 IPILVDRGVQKSTIAKLMISRLDD--ERKQLLEMLDDPVRLHNWVTKQGSATPALGILPW 912
Query: 522 SAENTNVLKE----LLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGC 577
A L E LL G++P PFL+ + F L + + R + ++G
Sbjct: 913 QAALPLTLPEKAKLLLRTGFQPYQSPFLARTLKRFVQQRQLWMEEKLRAPLGRATYLIGL 972
Query: 578 LDEKGTL---------------EYGQGL--------MVVAKKPCLHPGDMRVLRAVDVPA 614
D G L EYG+ +V+ ++P DM+ +RAV P
Sbjct: 973 ADPLGILKPGEVHVQFSKPFLDEYGRNTYRNLAGEEVVITRQPACRRSDMQKMRAVSHPQ 1032
Query: 615 LHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQP 662
L H+VD V+F ++G P + G D DG+ ++VCW+ D + P P
Sbjct: 1033 LSHLVDVVVFSSRGIYPAAGKLQGGDYDGDTFWVCWEPDLVVPFLNAP 1080
>gi|402584478|gb|EJW78419.1| hypothetical protein WUBG_10674, partial [Wuchereria bancrofti]
Length = 355
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 104/228 (45%), Gaps = 22/228 (9%)
Query: 637 SGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPA--PEKILARDVTIEDVEEYFADYIVNDS 694
+GSD DG+ Y V WD + +P ++ P IL D + ++ ++ +Y++ DS
Sbjct: 2 AGSDLDGDEYSVIWDDQMLFSYNEEPMDFSKLVRPPDILKEDEVVREMRRFYVEYVMQDS 61
Query: 695 LGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGV--------------AATI 740
+GII NA +V S+ S+ C + + S DF KTG I
Sbjct: 62 IGIIANAFLV--NSDTFGIASDVCMSIAEKHSQSVDFPKTGQPPKPLVKEWSSRPDGKMI 119
Query: 741 PSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDM 800
P R + +PDFM K + Y S +VG L+R + I TI S K + D +
Sbjct: 120 PPE-RPERWPDFMCKTHEPSYVSTRLVGQLFRRIRLID-DVLTITSTHKAQSEVKVDPLL 177
Query: 801 EVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEM 848
E G++ + + D T Y + LMD YGI+ E ++ S C ++
Sbjct: 178 EYIGWE--SYENDAVLNLTAYSAHIRALMDNYGIEDEYQLYSGCFCKI 223
>gi|327301211|ref|XP_003235298.1| hypothetical protein TERG_04355 [Trichophyton rubrum CBS 118892]
gi|326462650|gb|EGD88103.1| hypothetical protein TERG_04355 [Trichophyton rubrum CBS 118892]
Length = 1302
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 98/224 (43%), Gaps = 26/224 (11%)
Query: 510 SSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNL------LELRTR 563
SS++ E S T L LL+ G+ P F+ + + + L+++T
Sbjct: 793 SSQIPALNESTFSHSLTGRLNMLLDAGFSPSTLAFVRRLFKEYSLGGFVQKLEALKIKTP 852
Query: 564 ARIFI----------QNGQAMMGCLD--EKGTLEYGQGLMVVAKKPCLHPGDMRVLRAVD 611
++ + GQ + D E GT + ++VA+ P P D++ RAV
Sbjct: 853 QSTYVYCIPDPYGVLEEGQVHLDLGDSWEDGTTDLDGIDVLVARAPAHLPSDIQKCRAVF 912
Query: 612 VPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPE- 670
PAL ++ + +FP KGE P + SG D DG+ +VCWD + + P P P PE
Sbjct: 913 HPALRYLKNVAIFPTKGEVPLASLLSGGDYDGDEVWVCWDQEIVKPFVNYPMPDIPEPEE 972
Query: 671 ----KILAR--DVTIEDVEEY-FADYIVNDSLGIICNAHVVYAY 707
K+ R D+ + EY F + + LG+ N H Y Y
Sbjct: 973 YGLVKVSRRVGDMPFDRFMEYSFIFNMSQNPLGLCTNEHERYCY 1016
>gi|119370386|gb|ABL68090.1| putative RNA-directed RNA polymerase 3 [Nicotiana attenuata]
Length = 110
Score = 76.6 bits (187), Expect = 6e-11, Method: Composition-based stats.
Identities = 39/96 (40%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Query: 489 DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMM 548
D +F Q+E+++ LD +L DS + + S AE N +L+ G+KP +EP L M
Sbjct: 16 DGIFWEMQKEMISGLDKMLVDSDVAFDVIT-ASCAEAGNTAAIMLSAGFKPQSEPHLRGM 74
Query: 549 PQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL 584
+ AS L +LR +ARIF+ +G+ +MGCLDE G L
Sbjct: 75 LSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGEL 110
>gi|452002294|gb|EMD94752.1| hypothetical protein COCHEDRAFT_1201293 [Cochliobolus heterostrophus
C5]
Length = 1666
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 105/244 (43%), Gaps = 48/244 (19%)
Query: 470 LDILANSKYQREGVARLRLDNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVL 529
+ ILA+ +E ++ L D++ ++E + L+ +L D++KV E + + NT +
Sbjct: 1088 IPILADRGVPKEAISDLMFDSL----EKERMNLLN-VLQDTTKVHEWV--YRNGANTKLR 1140
Query: 530 KE-----------------LLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQ 572
+E LL G+ P P+L+ ++F S + + R+ +
Sbjct: 1141 EETPGRAGQPASLEEKVLNLLESGFDPLKFPYLAQNLESFILSRQIFQEAKLRVLLPKST 1200
Query: 573 AMMGCLDEKGTLEYGQGLMV-----------------------VAKKPCLHPGDMRVLRA 609
+ G D KG L G+ ++ VA+ P D++ +R
Sbjct: 1201 FLYGVADPKGVLNPGEIQVLFSWPFLDETTNERYLELRDLNVLVARHPACRRSDIQKVRT 1260
Query: 610 VDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAP 669
V P L H+VD +F +KG P + G D DG+I+++CW++ + P P P P
Sbjct: 1261 VIHPELSHLVDVAVFSSKGSFPLAGKLQGGDYDGDIFWICWENTLVQPFFNAPAPVQP-P 1319
Query: 670 EKIL 673
E L
Sbjct: 1320 EPSL 1323
>gi|451845380|gb|EMD58693.1| hypothetical protein COCSADRAFT_194603 [Cochliobolus sativus
ND90Pr]
Length = 1215
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 106/243 (43%), Gaps = 52/243 (21%)
Query: 467 STSLDILANSKYQREGVARLRLDNVFERKQREVVARLDAILTDSSKVQEALELMSSAENT 526
S+ + ILA+ +E ++ L LD++ ++E + L+ +L D++KV E + + NT
Sbjct: 634 SSFIPILADRGVTKEAISDLMLDSL----EKERINLLN-VLQDATKVHEWV--YRNGANT 686
Query: 527 NVLKE-----------------LLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQ 569
+ +E LL G+ P P+L+ ++F S + + R+ +
Sbjct: 687 KLREETHGRVGQPASLKEKALNLLESGFDPLKFPYLAQNLESFIMSRQIFQEAKLRVLLP 746
Query: 570 NGQAMMGCLDEKGTLEYGQGLMV-----------------------VAKKPCLHPGDMRV 606
+ G D G L G+ ++ VA++P D++
Sbjct: 747 KSTFLYGVADPLGVLNPGEIQILFSWPFVDETTNERYSDLRDLEVLVARQPACRRSDIQK 806
Query: 607 LRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYT 666
+R V P L H+VD +F +KG P + G D DG+I+++CW+ + QP
Sbjct: 807 VRTVIHPELSHLVDVAVFSSKGPFPLAGKLQGGDYDGDIFWICWEDTLV-----QPFFNA 861
Query: 667 PAP 669
PAP
Sbjct: 862 PAP 864
>gi|440298585|gb|ELP91216.1| RNA-dependent RNA polymerase, putative [Entamoeba invadens IP1]
Length = 1008
Score = 72.4 bits (176), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 98/393 (24%), Positives = 149/393 (37%), Gaps = 96/393 (24%)
Query: 420 IGKISAELAETV---AKKCGYAIY---TPSAFQIRYGGYKVTLRNNMFKYKSESTSLDIL 473
+G+IS LA V ++CG + P+AFQIR+ G K + S+D L
Sbjct: 391 VGRISLSLASKVFAEYRRCGENVIRVEEPAAFQIRFAGVKGVV------------SVDCL 438
Query: 474 ANSKYQREGVARLRLDNVFERKQREVVARLDAILTDSSKVQEALEL-------------- 519
S+ ++++++ ER Q+ V ++ + Q AL L
Sbjct: 439 DKSENIYFRPSQIKIEAFPERVQKLRVVQIPQYRSGRMNEQLALGLEYLEIPIPNFIQCA 498
Query: 520 --------------------MSSAENTNV---LKELLNCGY--KPDAEPFLSMMPQTFHA 554
+A+N V LK ++ G K EPF+
Sbjct: 499 KEYLRKYFTSIPNDEVVRLFQKNAKNPTVAIALKMVMAAGRDSKIFEEPFVKANSLVLRM 558
Query: 555 SNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQGL--------------MVVAKKPCLH 600
+ L E + I N +MG +DE G LE GQ ++ K P H
Sbjct: 559 AMLSEKSDFIKFDIDNSAFLMGVMDETGILEEGQVFIQLSSNSVFVPSSRLLAVKFPATH 618
Query: 601 PGDMRVLRAV----------DVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
PGD +LR V L ++ D ++F +KG RP N+ +G D DG+ Y V W
Sbjct: 619 PGDFLLLRNVCENVLFERKRGYERLAYLKDVIVFSSKGYRPDPNKMAGGDLDGDEYLVIW 678
Query: 651 DHDRIPPL--QFQPTAYTPAPEKILARDVTIEDVEEYFADYIVND-SLGIICNAHVVYAY 707
+ +P L + P A E L R + D++ F + + L I H
Sbjct: 679 NPLFLPKLGKKSHPPANYDFEETHLERFLEYNDMKHAFVSQLYSKYVLAQISTCHKKACM 738
Query: 708 S-----EPDKAMSNRCPDLVKLSSIVGDFSKTG 735
S E KA+S +L S+ D KTG
Sbjct: 739 SLGMQDEISKALS-------QLISVAVDAPKTG 764
>gi|299740231|ref|XP_001838952.2| hypothetical protein CC1G_05505 [Coprinopsis cinerea okayama7#130]
gi|298404148|gb|EAU82883.2| hypothetical protein CC1G_05505 [Coprinopsis cinerea okayama7#130]
Length = 1214
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 22/168 (13%)
Query: 257 PAVALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLY 316
P D L + + TPS+ GP + NR++R Y D D+F+R+ F DED G+ +
Sbjct: 339 PRQDQDSKLFECHHVTCTPSRFILVGPNPTGFNRIIRKYRDYTDHFIRVDFRDED-GQYF 397
Query: 317 STVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMF---- 372
SS + T + R+ L+ GI I + FE LA+S+S + ++ W
Sbjct: 398 R-------SSFEVDASTLVKTRIGGVLKGGITIAGRHFEFLAYSSSSMKVHSTWFLNPFE 450
Query: 373 -----ASRPELTAADIRERM-----GDFREIKNVTKYAARLGQSFASS 410
R +TA IRE + + + ++ +KYAAR+ +F +S
Sbjct: 451 FKDRTGQRIRVTAQRIREDIIPDIPANVQLMRTPSKYAARIALAFTTS 498
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 103/471 (21%), Positives = 176/471 (37%), Gaps = 127/471 (26%)
Query: 420 IGKISAELAETVAK----KCGYAIYT---PSAFQIRYGGYK--------------VTLRN 458
+G IS EL + + K K G ++ PSA+ +R GYK + LR
Sbjct: 568 VGSISKELNDRIWKEYYEKRGLEVHPNFYPSAWMLRMLGYKGVVAVDPEMEGPIHLRLRK 627
Query: 459 NMFKYKS------ESTSLDILANSKYQREGVARL-------------------------- 486
+M K++S + + + I Y + G+ L
Sbjct: 628 SMHKFESLEDDLSQHSEVRIEIAEIYDKPGLCYLNRFYLPFFPHLHRLLITPVLFRPLVM 687
Query: 487 ------RLDNVFERKQREVVA---RLDAILTDSSKVQEALELMSSAENTNVLKELLNCGY 537
R VFE QR VA +DA + S++ + L + + T +L+ + G
Sbjct: 688 MFDLHDRPLEVFEELQRMAVADAMTIDASIDQFSRLMQMHGLGNPFKITYLLEHVEALGL 747
Query: 538 KPD----AEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMG----------------- 576
+ P + + + +R ARI + ++G
Sbjct: 748 SLEELDQVSPLWKALRDVAFKTVMAGIRYEARIPVPKSWVLVGVADEGPAYKGQPGYENV 807
Query: 577 -CL-----------DEKGTLEYGQGLMVVAKKPCLHPGDMRVLRAVDVPA------LHHM 618
CL D+ E+ +G VV + P + PGD++ +RA+ P +
Sbjct: 808 YCLPENCIFVCIQEDQDSEPEWLEGDCVVTRNPVVRPGDIQKVRAIGKPPRGVKCLFRDL 867
Query: 619 VDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPL---QFQPTAYTPAPEKILAR 675
+ V+F ++G R + +G D DG+ Y V + + P + K AR
Sbjct: 868 KNVVVFSSQGRRSLPSCLAGGDLDGDKYAVIQYEGLLTETYRREADPDEAKDSKFKDKAR 927
Query: 676 DVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEP--DKAMSNRCPDLVKLSSIVGDFSK 733
V ED+ ++F Y+ N V+ ++E ++ + C L KL S D+ K
Sbjct: 928 KVKPEDICDFFVQYV---------NRDVLDPFNEKGYNQQGDDECSILAKLCSQAVDYPK 978
Query: 734 TGVA-----ATIPSRLRVKIY--PDF-----MEKQDKTWYESQHIVGNLYR 772
G+ I LR KI PD+ + D +Y+S ++G+LYR
Sbjct: 979 KGIPIDLDNPEIKRILRPKITHKPDWDRDGSSDMVDTIYYKSSRVLGHLYR 1029
>gi|115435092|ref|NP_001042304.1| Os01g0198000 [Oryza sativa Japonica Group]
gi|56201772|dbj|BAD73222.1| RNA-dependent RNA polymerase -like [Oryza sativa Japonica Group]
gi|56201879|dbj|BAD73329.1| RNA-dependent RNA polymerase -like [Oryza sativa Japonica Group]
gi|113531835|dbj|BAF04218.1| Os01g0198000 [Oryza sativa Japonica Group]
gi|215693837|dbj|BAG89036.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 582
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 121/283 (42%), Gaps = 48/283 (16%)
Query: 541 AEPFLSMMP--QTFHASNLLELRTRARIFIQNGQA-------MMGCLDEKG--------- 582
A LS +P +++ S L L R I+NG+ +MG D G
Sbjct: 153 ARMILSGIPLEESYLQSRLDFLSLLERKGIKNGKIPIDDCYYLMGTADPTGKLGPNEVCV 212
Query: 583 TLEYGQ--GLMVVAKKPCLHPGDMRVLRAVDVPALHHMV----DCVLFPAKGERPHTNEC 636
L+YGQ G ++V K P LHPGD+ VL+A + +V +LFP G+R +E
Sbjct: 213 ILDYGQVSGDVLVYKYPGLHPGDIHVLKATYSSDIEKVVGNSKHAILFPTTGQRSLADEM 272
Query: 637 SGSDQDGEIYFVCWDHDRIPPLQFQPT-----AYTP------APEKI----LARDVTIED 681
+ SD DG+IY+V + + F+P+ A TP PE L R + E
Sbjct: 273 ANSDFDGDIYWVSLNPKLLE--HFKPSKPWVPAITPNGTKQKGPEDFNESELERVLFHEF 330
Query: 682 VEEYFADYIVNDSLG----IICNAHVVYAYSEPDKAM-SNRCPDLVKLSSIVGDFSKTGV 736
++ FA + + + + + E +K + + LV L + D K G
Sbjct: 331 LKTRFAPSYARATAATNWLVYMDRLLTVSLDESEKKLIEKKMLKLVDLYYLALDAPKMGN 390
Query: 737 AATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAP 779
IP L VK YP FM++ Y S I+G +Y + P
Sbjct: 391 KVNIPRDLMVKQYPHFMDRSPS--YHSSSILGKIYDKAGDPKP 431
>gi|452845289|gb|EME47222.1| hypothetical protein DOTSEDRAFT_69242 [Dothistroma septosporum
NZE10]
Length = 816
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 86/195 (44%), Gaps = 34/195 (17%)
Query: 531 ELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ-- 588
++L G+ P + +L+ + + L R +I + ++G D G L+ G+
Sbjct: 315 QMLESGFFPQEDAYLAELVVEMVGNYLTLKRKNFKIHVPRSTTVIGISDPLGCLQPGEIH 374
Query: 589 --------------------GLMVVA-KKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAK 627
G+ V++ + P + DM+ LRAV P L H+ D V+FP++
Sbjct: 375 IGFSTPFRDHKAGASWMHLHGMNVLSTRNPSMAGSDMQKLRAVYKPELAHLRDVVVFPSQ 434
Query: 628 GERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAY---TPAPEK--ILARDVTIED- 681
G RP + G D DG+ +++CW+ + P P + P PE+ I+ T+ D
Sbjct: 435 GMRPLAGKLQGGDYDGDTFWLCWEPSLVDPFLNAPAPWETDVPTPEQLGIIKDSTTLADT 494
Query: 682 -----VEEYFADYIV 691
+ AD++V
Sbjct: 495 VGSCPTDSALADWLV 509
>gi|402577566|gb|EJW71522.1| hypothetical protein WUBG_17571 [Wuchereria bancrofti]
Length = 89
Score = 70.9 bits (172), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 24/89 (26%)
Query: 574 MMGCLDEKGTLEYGQ------------------------GLMVVAKKPCLHPGDMRVLRA 609
M G LDE G L+YGQ G +++ K P + GD+R+ A
Sbjct: 1 MFGILDETGLLQYGQVFVQFTNDVFLKTPPKAAAKTIVKGFVLITKNPSIVAGDVRIFEA 60
Query: 610 VDVPALHHMVDCVLFPAKGERPHTNECSG 638
VD+P L H+VD V+FP G RPHT+E +G
Sbjct: 61 VDLPELRHLVDVVVFPQHGPRPHTDEMAG 89
>gi|407036402|gb|EKE38145.1| RNA-directed RNA polymerase, putative [Entamoeba nuttalli P19]
Length = 1026
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 90/213 (42%), Gaps = 39/213 (18%)
Query: 497 REVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASN 556
RE+++ T++ ++ AL+++ ++ + E EPF+ S
Sbjct: 549 REIISLFQR-FTNNPVIEVALKIIMASNGNQKIYE----------EPFIRATSLVLRMSL 597
Query: 557 LLELRTRARIFIQNGQAMMGCLDEKGTLEYGQGL--------------MVVAKKPCLHPG 602
L E + I N +MG +DE G LE G+ ++V K P HPG
Sbjct: 598 LSEKTDFIKFDIDNSAFLMGVMDESGLLEEGEVFIQVTTPTVTIPSSRLLVVKFPATHPG 657
Query: 603 DMRVLRAV----------DVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDH 652
D +L V L ++ D ++F +KG RP N+ SG D DG+ Y + W+
Sbjct: 658 DFVLLNNVVDKINSEKKKGFERLTYLRDVIVFSSKGNRPDPNKLSGGDLDGDEYLIIWNP 717
Query: 653 DRIPPLQFQPTAYTPAPEKILARDVTIEDVEEY 685
+P +P ++ AP + V +E E+
Sbjct: 718 LFLP----KPEIHSHAPATYDSEKVHLEKFLEF 746
>gi|397594531|gb|EJK56264.1| hypothetical protein THAOC_23889, partial [Thalassiosira oceanica]
Length = 225
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 76/161 (47%), Gaps = 8/161 (4%)
Query: 637 SGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVT-IEDVE--EYFADYIVND 693
SGSD DG+++ V WD P Y+P P L ++ I D +F + ND
Sbjct: 2 SGSDLDGDLFAVTWDERLFLRQSLDPMDYSPPP--TLGQETPPINDASLLAHFVGHAKND 59
Query: 694 SLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVK-IYP-- 750
+LG I + +A ++ A + C L KL+SI DF K+G+ AT+P L++K P
Sbjct: 60 NLGRISMLWLDHAVTKGGGAGCHECVRLAKLASIAVDFPKSGIPATLPDDLKIKSTVPRA 119
Query: 751 DFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEG 791
+ E ++ T + I+G LY V TT A G
Sbjct: 120 HWRELKNNTSFHCNSILGRLYDMVVSAMKDGTTFDCVALAG 160
>gi|183233879|ref|XP_651309.2| RNA-directed RNA polymerase [Entamoeba histolytica HM-1:IMSS]
gi|169801365|gb|EAL45936.2| RNA-directed RNA polymerase, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449710750|gb|EMD49768.1| RNA-dependent RNA polymerase, putative [Entamoeba histolytica KU27]
Length = 1026
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 90/213 (42%), Gaps = 39/213 (18%)
Query: 497 REVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASN 556
RE+++ T++ ++ AL+++ ++ + E EPF+ S
Sbjct: 549 REIISLFQR-FTNNPVIEVALKIIMASNGNQKIYE----------EPFIRATSLVLRMSL 597
Query: 557 LLELRTRARIFIQNGQAMMGCLDEKGTLEYGQGL--------------MVVAKKPCLHPG 602
L E + I N +MG +DE G LE G+ ++V K P HPG
Sbjct: 598 LSEKTDFIKFDIDNSAFLMGVMDESGLLEEGEVFIQVTTSTVTIPSSRLLVVKFPATHPG 657
Query: 603 DMRVLRAV----------DVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDH 652
D +L V L ++ D ++F +KG RP N+ SG D DG+ Y + W+
Sbjct: 658 DFVLLNNVVDKINLEKKKGFERLTYLRDVIVFSSKGNRPDPNKLSGGDLDGDEYLIIWNP 717
Query: 653 DRIPPLQFQPTAYTPAPEKILARDVTIEDVEEY 685
+P +P ++ AP + V +E E+
Sbjct: 718 LFLP----KPEIHSHAPATYDSEKVHLEKFLEF 746
>gi|396489578|ref|XP_003843139.1| similar to RNA-directed RNA polymerase 2 [Leptosphaeria maculans JN3]
gi|312219717|emb|CBX99660.1| similar to RNA-directed RNA polymerase 2 [Leptosphaeria maculans JN3]
Length = 1435
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 31/154 (20%)
Query: 529 LKELLNCGYKPDAEPFLS--MMPQTFHASNLLELRTRARIFIQNGQA--MMGCLDEKGTL 584
+K LL G+ P PFL+ ++ +++E + RA + G A ++G D +G L
Sbjct: 928 VKLLLRAGFTPQDSPFLAKVLINLIRQRQSVMEQKLRAPL----GSATFLLGLADPEGVL 983
Query: 585 EYGQ----------------------GLMV-VAKKPCLHPGDMRVLRAVDVPALHHMVDC 621
E GQ GL V +A++P D++ +R V L H+ D
Sbjct: 984 EPGQVHISFSLPFVDEFSRQTYRHLDGLEVLIARQPACRRSDIQKVRVVTYSKLAHLRDV 1043
Query: 622 VLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRI 655
++FP +G+ P + G D DG+I++ CW++D +
Sbjct: 1044 IVFPTRGQYPLAGKLQGGDYDGDIFWTCWENDLV 1077
>gi|451994085|gb|EMD86556.1| hypothetical protein COCHEDRAFT_1034368 [Cochliobolus
heterostrophus C5]
Length = 158
Score = 69.7 bits (169), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 75/155 (48%), Gaps = 12/155 (7%)
Query: 685 YFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRL 744
+F +YI ND+LG I +AH+ A + C +L +L S DF K+G+ A + L
Sbjct: 4 FFVNYIKNDALGPIAHAHLAQADFNENGVGDPICLELAELHSRAVDFPKSGIPAEMKREL 63
Query: 745 RVKIYPDFMEKQ---DKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDME 801
R K +P FMEK+ Y+S+ I+G LY EV I F K ++ +D D E
Sbjct: 64 RPKKWPHFMEKKYLSQHQIYKSKKILGLLYDEVKLIDFEPQWENQFDKR-ILEAFDLDQE 122
Query: 802 VNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKT 836
+ + A + YD L LM +GI+T
Sbjct: 123 L--LDKAA------SLKLSYDEALRPLMAKHGIRT 149
>gi|251765120|sp|Q5QMN4.2|RDR4_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 4; Short=OsRDR4
Length = 1183
Score = 69.7 bits (169), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 121/283 (42%), Gaps = 48/283 (16%)
Query: 541 AEPFLSMMP--QTFHASNLLELRTRARIFIQNGQA-------MMGCLDEKG--------- 582
A LS +P +++ S L L R I+NG+ +MG D G
Sbjct: 754 ARMILSGIPLEESYLQSRLDFLSLLERKGIKNGKIPIDDCYYLMGTADPTGKLGPNEVCV 813
Query: 583 TLEYGQ--GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVD----CVLFPAKGERPHTNEC 636
L+YGQ G ++V K P LHPGD+ VL+A + +V +LFP G+R +E
Sbjct: 814 ILDYGQVSGDVLVYKYPGLHPGDIHVLKATYSSDIEKVVGNSKHAILFPTTGQRSLADEM 873
Query: 637 SGSDQDGEIYFVCWDHDRIPPLQFQPT-----AYTP------APEKI----LARDVTIED 681
+ SD DG+IY+V + + F+P+ A TP PE L R + E
Sbjct: 874 ANSDFDGDIYWVSLNPKLLE--HFKPSKPWVPAITPNGTKQKGPEDFNESELERVLFHEF 931
Query: 682 VEEYFADYIVNDSLG----IICNAHVVYAYSEPDKAM-SNRCPDLVKLSSIVGDFSKTGV 736
++ FA + + + + + E +K + + LV L + D K G
Sbjct: 932 LKTRFAPSYARATAATNWLVYMDRLLTVSLDESEKKLIEKKMLKLVDLYYLALDAPKMGN 991
Query: 737 AATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAP 779
IP L VK YP FM++ Y S I+G +Y + P
Sbjct: 992 KVNIPRDLMVKQYPHFMDRSPS--YHSSSILGKIYDKAGDPKP 1032
>gi|7505900|pir||T23669 hypothetical protein M01G12.12 - Caenorhabditis elegans (fragment)
gi|25395342|pir||F87936 protein M01G12.12 [imported] - Caenorhabditis elegans
Length = 604
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 83/168 (49%), Gaps = 25/168 (14%)
Query: 261 LDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVL 320
++ G V K++ TP++V + PE+ + NRV+R++ + + LR++F D++ K+ +
Sbjct: 443 IEEGYQRVRKVIFTPTRVIYTPPEMIMGNRVLRNFDRDGTHVLRVTFRDDNNRKMRANAT 502
Query: 321 SPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFA------- 373
+ V L +GIV+ ++ F L S+SQ R+N +
Sbjct: 503 GELLDIC-----------VKKYLEHGIVVANRDFGFLGCSSSQMRDNGAYFMVKNTDNRH 551
Query: 374 -------SRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREAL 414
S+ + +R ++G+F +I+N+ K ARLGQ F SR ++
Sbjct: 552 KNACKMNSKFKPNIDSVRNQLGNFLQIENIPKLMARLGQCFTQSRVSV 599
>gi|222617921|gb|EEE54053.1| hypothetical protein OsJ_00746 [Oryza sativa Japonica Group]
Length = 1148
Score = 69.3 bits (168), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 108/251 (43%), Gaps = 39/251 (15%)
Query: 564 ARIFIQNGQAMMGCLDEKG---------TLEYGQ--GLMVVAKKPCLHPGDMRVLRAVDV 612
+I I + +MG D G L+YGQ G ++V K P LHPGD+ VL+A
Sbjct: 751 GKIPIDDCYYLMGTADPTGKLGPNEVCVILDYGQVSGDVLVYKYPGLHPGDIHVLKATYS 810
Query: 613 PALHHMVD----CVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPT----- 663
+ +V +LFP G+R +E + SD DG+IY+V + + F+P+
Sbjct: 811 SDIEKVVGNSKHAILFPTTGQRSLADEMANSDFDGDIYWVSLNPKLLE--HFKPSKPWVP 868
Query: 664 AYTP------APEKI----LARDVTIEDVEEYFADYIVNDSLG----IICNAHVVYAYSE 709
A TP PE L R + E ++ FA + + + + + E
Sbjct: 869 AITPNGTKQKGPEDFNESELERVLFHEFLKTRFAPSYARATAATNWLVYMDRLLTVSLDE 928
Query: 710 PDKAM-SNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVG 768
+K + + LV L + D K G IP L VK YP FM++ Y S I+G
Sbjct: 929 SEKKLIEKKMLKLVDLYYLALDAPKMGNKVNIPRDLMVKQYPHFMDRSPS--YHSSSILG 986
Query: 769 NLYREVNGIAP 779
+Y + P
Sbjct: 987 KIYDKAGDPKP 997
>gi|330915603|ref|XP_003297095.1| hypothetical protein PTT_07392 [Pyrenophora teres f. teres 0-1]
gi|311330417|gb|EFQ94809.1| hypothetical protein PTT_07392 [Pyrenophora teres f. teres 0-1]
Length = 1415
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 28/164 (17%)
Query: 529 LKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ 588
+K LL G+ P L+ Q F + + ++ R+ + + G +D G LE G+
Sbjct: 914 VKLLLESGFSPAKFSPLAQSLQRFIQAKQILQESKLRVPLAKSTFLFGIVDPLGVLEPGE 973
Query: 589 -----------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFP 625
++VA++P D++ +R V L H+VD V+FP
Sbjct: 974 IQVQFSSSFADDTTDEKYLCLRDMEVLVARQPACRRSDIQKVRTVIRSELSHLVDVVVFP 1033
Query: 626 AKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAP 669
+KG P + G D DG+I+++CW+ P QP PAP
Sbjct: 1034 SKGRYPLAGKLQGGDYDGDIFWICWE-----PQLVQPFLNAPAP 1072
>gi|218187687|gb|EEC70114.1| hypothetical protein OsI_00773 [Oryza sativa Indica Group]
Length = 1172
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 108/251 (43%), Gaps = 39/251 (15%)
Query: 564 ARIFIQNGQAMMGCLDEKG---------TLEYGQ--GLMVVAKKPCLHPGDMRVLRAVDV 612
+I I + +MG D G L+YGQ G ++V K P LHPGD+ VL+A
Sbjct: 762 GKIPIDDCYYLMGTADPTGKLGPNEVCVILDYGQVSGDVLVYKYPGLHPGDIHVLKATYS 821
Query: 613 PALHHMVD----CVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPT----- 663
+ +V +LFP G+R +E + SD DG+IY+V + + F+P+
Sbjct: 822 SDIGKVVGNSKHAILFPTTGQRSLADEMANSDFDGDIYWVSLNPKLLE--HFKPSKPWVP 879
Query: 664 AYTP------APEKI----LARDVTIEDVEEYFADYIVNDSLG----IICNAHVVYAYSE 709
A TP PE L R + E ++ FA + + + + + E
Sbjct: 880 AITPNGTKQKGPEDFNESELERVLFHEFLKTRFAPSYARATAATNWLVYMDRLLTVSLDE 939
Query: 710 PDKAM-SNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVG 768
+K + + LV L + D K G IP L VK YP FM++ Y S I+G
Sbjct: 940 SEKKLIEKKMLKLVDLYYLALDAPKMGNKVNIPRDLMVKQYPHFMDRSPS--YHSSSILG 997
Query: 769 NLYREVNGIAP 779
+Y + P
Sbjct: 998 KIYDKAGDPKP 1008
>gi|406867650|gb|EKD20688.1| RNA-dependent RNA polymerase 1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 901
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 101/220 (45%), Gaps = 24/220 (10%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
+++ VT + + GP++ +NR +R Y + D F+R+SF ED L
Sbjct: 371 IHRARVTATSITLSGPQLESNNRTLRKYKEFHDYFMRVSFGAEDGEPLMYHSKVSNYHVY 430
Query: 328 NGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAA----DI 383
+G R I +R G+ IG + F L F S RE + W+ A L + DI
Sbjct: 431 HG-RFQEIPDR-------GVKIGGRVFSFLGFPQSSLRERSYWLVAPFGSLGSLLLDRDI 482
Query: 384 RERMGDFREIKNVTKYAARLGQSFASSREALHVDSNIGKISAELAET---VAKKCGYAIY 440
+G+F I++ K AAR+GQ+F+ +R + +D I + ++ + + CG
Sbjct: 483 TGGLGNFTLIRSPAKCAARIGQAFSDTRSFMTIDPLIVRNMEDIKRSGYVFSDGCGTIAL 542
Query: 441 T--------PSAFQIRYGGYKVTLRNNMFKYKSESTSLDI 472
+ + R G ++ LR++M K+ STS DI
Sbjct: 543 SLLCLGAKGMISLDSRLDGDQLCLRDSMIKFDG-STSNDI 581
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 88/231 (38%), Gaps = 58/231 (25%)
Query: 564 ARIFIQNGQAMMGCLDEKGTLEYGQGL----------------MVVAKKPCLHPGDMRVL 607
ARI + G + G +DE G+L+ G+ +V+ + P L PGD+R+
Sbjct: 655 ARIPVPRGWHLHGIMDETGSLKEGEIFCVGVEEGVKNVITSERLVITRAPALDPGDVRIA 714
Query: 608 RAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTP 667
+AV PA E P E G D DG+ ++V WD D +P +F+ Y
Sbjct: 715 KAVMPPA--------------ESPLM-ELGGGDLDGDRFYVIWDDDALPENEFEAAEYPS 759
Query: 668 APEKILA----------RDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNR 717
P ILA + I+ +V S IIC + +
Sbjct: 760 LPRWILAALFNAKISLDSALIIKRTSGSVPSQLVTASQQIICRG----------GTDAEK 809
Query: 718 CPDLVKLSSIVGDFSKTGVAAT------IPSRLRVKIYPDFMEKQDKTWYE 762
C L + DF KTG+ A IP R R+ I + K W E
Sbjct: 810 CKTFAMLHGVAVDFPKTGIPACCVDPTQIPVRRRLWITYSIL-KDGGDWPE 859
>gi|189208947|ref|XP_001940806.1| RNA-directed RNA polymerase 2 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976899|gb|EDU43525.1| RNA-directed RNA polymerase 2 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 1436
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 529 LKELLNCGYKPDA-EPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYG 587
+K LL G+ P +P + + A +L+ ++ R+ + + G +D LE G
Sbjct: 932 VKLLLESGFSPAKFQPLAQSLQRFIQAKQILQ-ESKLRVPLAKSTFLFGIVDPFEVLEPG 990
Query: 588 Q-------------------GL----MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLF 624
Q GL ++VA++P D++ +R V P L H+VD V+F
Sbjct: 991 QIQVQFSSSFADDTTDEKYLGLRDMEVLVARQPACRRSDIQKVRTVIRPELSHLVDVVVF 1050
Query: 625 PAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAY-TPAPEKILARDVT--IED 681
P++G P + G D DG+I+++CW+ + P P +P P + + T + D
Sbjct: 1051 PSRGRYPLAGKLQGGDYDGDIFWICWEPQLVLPFLNAPAPVQSPDPARYEIKKTTAKVRD 1110
Query: 682 V 682
V
Sbjct: 1111 V 1111
>gi|115400193|ref|XP_001215685.1| predicted protein [Aspergillus terreus NIH2624]
gi|114191351|gb|EAU33051.1| predicted protein [Aspergillus terreus NIH2624]
Length = 1285
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 18/160 (11%)
Query: 591 MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
++VA+ P P D++ +RAV P L H D ++FP G+ P ++ SG D DG+ +VCW
Sbjct: 869 VLVARVPAHFPSDIQRVRAVWKPELRHFKDVIVFPTTGDVPLAHKLSGGDYDGDTPWVCW 928
Query: 651 DHDRIP-------PLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVND----SLGIIC 699
D + + P ++ P + + RD I+ V+E+ I + SLG
Sbjct: 929 DQEIVQNFQNSDLPREYPPEHFGLTNHSVPMRD--IQSVDEFLQSAITYNLTLSSLGKCT 986
Query: 700 NAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAAT 739
H AY E S P+ +KL+S++ A T
Sbjct: 987 IEHERLAYDE-----SIGSPNAMKLASLLSHLVDARKAGT 1021
>gi|297738765|emb|CBI28010.3| unnamed protein product [Vitis vinifera]
Length = 929
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 115/253 (45%), Gaps = 50/253 (19%)
Query: 574 MMGCLDEKGTL---------EYGQ--GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVD-- 620
+MG D GTL ++GQ G ++V K P LH GD+ VL A V AL V
Sbjct: 552 LMGTADPTGTLKSDEVCIILDHGQVQGRVLVYKHPGLHFGDIHVLNATYVEALEEFVGNA 611
Query: 621 --CVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRI-------PPLQFQPTAYTPAPEK 671
+ FP KG R +E + SD DG++Y+V + + P ++ + T + P+
Sbjct: 612 KYAIFFPIKGPRSLADEMANSDFDGDMYWVSRNQQLLQYFRASEPWMRKRSTRHVPSKRP 671
Query: 672 ILARDVTIEDVE-EYFADYI-----VNDSLGIICNAHVVYAYSEPDKAMSNR--CPD--- 720
D + +++E E F ++ + ++G+ + +V+ D+ ++ R C D
Sbjct: 672 T---DFSPDELEHELFQLFLTTRFQTSSAIGMAADNWLVFM----DRLLTLRDDCSDEKE 724
Query: 721 -----LVKLSSI---VGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYR 772
+++L+ I D K+G+ + L+ + +P FM ++ Y S I+G +Y
Sbjct: 725 CLKRKMLELTDIYYDALDAPKSGMKVNVSKELKAEKFPHFMGRESS--YHSTSILGQIYD 782
Query: 773 EVNGIAPSTTTIK 785
V P + K
Sbjct: 783 AVESFQPENQSTK 795
>gi|367049126|ref|XP_003654942.1| hypothetical protein THITE_2079458 [Thielavia terrestris NRRL 8126]
gi|347002206|gb|AEO68606.1| hypothetical protein THITE_2079458 [Thielavia terrestris NRRL 8126]
Length = 1373
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 43/63 (68%)
Query: 591 MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
++VA+ P P D++ +RAV P LH + D ++FPAKG+ P ++ SG D DG++ +VCW
Sbjct: 918 VLVARSPAHFPSDIQKVRAVFKPQLHALKDVIVFPAKGDIPLADKLSGGDYDGDMAWVCW 977
Query: 651 DHD 653
D D
Sbjct: 978 DPD 980
>gi|225445110|ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
vinifera]
Length = 943
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 115/253 (45%), Gaps = 50/253 (19%)
Query: 574 MMGCLDEKGTL---------EYGQ--GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVD-- 620
+MG D GTL ++GQ G ++V K P LH GD+ VL A V AL V
Sbjct: 566 LMGTADPTGTLKSDEVCIILDHGQVQGRVLVYKHPGLHFGDIHVLNATYVEALEEFVGNA 625
Query: 621 --CVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRI-------PPLQFQPTAYTPAPEK 671
+ FP KG R +E + SD DG++Y+V + + P ++ + T + P+
Sbjct: 626 KYAIFFPIKGPRSLADEMANSDFDGDMYWVSRNQQLLQYFRASEPWMRKRSTRHVPSKRP 685
Query: 672 ILARDVTIEDVE-EYFADYI-----VNDSLGIICNAHVVYAYSEPDKAMSNR--CPD--- 720
D + +++E E F ++ + ++G+ + +V+ D+ ++ R C D
Sbjct: 686 T---DFSPDELEHELFQLFLTTRFQTSSAIGMAADNWLVFM----DRLLTLRDDCSDEKE 738
Query: 721 -----LVKLSSI---VGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYR 772
+++L+ I D K+G+ + L+ + +P FM ++ Y S I+G +Y
Sbjct: 739 CLKRKMLELTDIYYDALDAPKSGMKVNVSKELKAEKFPHFMGRESS--YHSTSILGQIYD 796
Query: 773 EVNGIAPSTTTIK 785
V P + K
Sbjct: 797 AVESFQPENQSTK 809
>gi|367029127|ref|XP_003663847.1| hypothetical protein MYCTH_2306054 [Myceliophthora thermophila ATCC
42464]
gi|347011117|gb|AEO58602.1| hypothetical protein MYCTH_2306054 [Myceliophthora thermophila ATCC
42464]
Length = 1364
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 83/350 (23%), Positives = 134/350 (38%), Gaps = 81/350 (23%)
Query: 523 AENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKG 582
A+ +L L+N G+ P ++ +L + LRT+ I + + +D G
Sbjct: 832 ADKNEILALLMNSGFDPKSQRYLRDLAWELQKQKCDTLRTKLNIKVGRSAYIYMVVDFWG 891
Query: 583 TLEYGQ--------------GL---------MVVAKKPCLHPGDMRVLRAVDVPALHHMV 619
LE + G+ ++VA+ P D++ +RAV P LH +
Sbjct: 892 VLEENEVHVGFSSKFRDELDGVSYTLLADCDVLVARSPAHFVSDIQKVRAVFKPELHALK 951
Query: 620 DCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTI 679
D ++F KG+ P ++ SG D DG+ +VCWD + + + P L +D T
Sbjct: 952 DVIVFSTKGDIPLADKLSGGDYDGDFAWVCWDPEIVDNFENAEVPVEPDLSAYLRKDKTT 1011
Query: 680 ED---------------------VEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRC 718
D +++ F + + LGI N Y E +N
Sbjct: 1012 FDELVCRTGKTGRRARHDAVYDMIDKSFQFAMQPNYLGICTN------YKERLCYYNNSV 1065
Query: 719 PD--LVKLSSIVG---DFSKTGVAATIPS--RLRVKIYPDFMEKQDKTWY--------ES 763
D V LSS+VG D SK G+ T S RLR +P M D + E
Sbjct: 1066 SDEGAVLLSSLVGKLVDQSKQGIIFTADSWDRLRRDKFPGKMYLDDPAYKGNYWSGPGEP 1125
Query: 764 QHIVGNLYREV-------------NGIAPSTTTIKSFAKEGAMQFYDTDM 800
HI+ L V + P ++ + A +GA ++D D+
Sbjct: 1126 SHIIDYLRFSVAKPAIDHELQSLHESMGPESS---AGASDGAAHWWDPDL 1172
>gi|333440980|gb|AEF32765.1| RdRP2 [Ascaris suum]
Length = 384
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 90/230 (39%), Gaps = 50/230 (21%)
Query: 264 GLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQ 323
G V K+++TP+++ PE+ + NRV+R++ + D LR+ F D+D ++ + P
Sbjct: 88 GYRRVRKVVLTPTRMLLVVPELLMGNRVLRTHDESGDRALRVQFRDDDGTRMKHNTVGPY 147
Query: 324 ISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMF----------- 372
+ T V + L G+ I D+ F LA SNSQ R+N + F
Sbjct: 148 LIQTT----------VHNALVRGVYIADRHFVYLASSNSQMRDNGCYFFDDGDGGXXXXX 197
Query: 373 ----ASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREA----LH--------- 415
AR+GQ F ++E LH
Sbjct: 198 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLMARMGQCFTQAKECSIKLLHRRYNKTFDI 257
Query: 416 ---VDSN---------IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK 453
+DS+ G++S E A+ +A PS FQIR+ G K
Sbjct: 258 IGGMDSSGEPYTFSDGCGRLSPEFAQRIADDLHLGKCVPSCFQIRFRGIK 307
>gi|238597177|ref|XP_002394255.1| hypothetical protein MPER_05887 [Moniliophthora perniciosa FA553]
gi|215462994|gb|EEB95185.1| hypothetical protein MPER_05887 [Moniliophthora perniciosa FA553]
Length = 279
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 103/217 (47%), Gaps = 23/217 (10%)
Query: 586 YGQGLMVVAKKPCLHPGDMRVLRAVDVPA------LHHMVDCVLFPAKGERPHTNECSGS 639
Y +G +++ P HPGD++ + A+ P HM + V+ P++G+R ++ G
Sbjct: 9 YLEGRCTISRSPVAHPGDVQTVHAIGKPPTDKLCLFAHMKNVVVLPSRGKRSLASKLGGG 68
Query: 640 DQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIE--DVEEYFADYIVNDSLGI 697
D DG++Y V + PPL +P +Y L D T+E D+ ++ +YI +D LG+
Sbjct: 69 DLDGDLYDVITYPELQPPLDNKPMSYEAGETLTLKEDRTVEPRDICDFIVNYINSDVLGL 128
Query: 698 ICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVG----DFSKTGVAAT-----IPSRLRVKI 748
+ + +V A D C L KL S D+ K G+ +P+ L ++
Sbjct: 129 LSDRLLVIADQSKDGIYDRDCEKLAKLCSQTTYQAVDYPKNGIPVDLDKDRLPNTL-IRC 187
Query: 749 YPDF-----MEKQDKTWYESQHIVGNLYREVNGIAPS 780
PD+ ++ + +Y S +G ++R+V P+
Sbjct: 188 KPDWHAAEVVDPRGTDYYMSTRALGEMFRKVRLAEPT 224
>gi|384496670|gb|EIE87161.1| hypothetical protein RO3G_11872 [Rhizopus delemar RA 99-880]
Length = 1225
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 578 LDEKGTLEYGQ--GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNE 635
+DEK + G G +VVA+ PC D++ ++A+D PAL D ++F KGE ++
Sbjct: 767 VDEKTGIRAGLILGDVVVARNPCGLKSDVQKVKAIDCPALRMYTDLIIFSTKGESSLASK 826
Query: 636 CSGSDQDGEIYFVCWDHDRIPPLQFQP 662
G D DG++ F CWD + P P
Sbjct: 827 LGGGDYDGDLVFCCWDQRIVEPFTASP 853
>gi|296817563|ref|XP_002849118.1| RNA-dependent RNA polymerase [Arthroderma otae CBS 113480]
gi|238839571|gb|EEQ29233.1| RNA-dependent RNA polymerase [Arthroderma otae CBS 113480]
Length = 1255
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 18/157 (11%)
Query: 532 LLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ--- 588
LL+ G+ P FL + + F+ N L+ +I I + D G LE G+
Sbjct: 819 LLDAGFLPSKLYFLRRLFK-FYFDNYLQKLGDLKIKIPKSTYVYCIADPYGVLEEGEVHL 877
Query: 589 -------------GL-MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTN 634
G+ ++VA+ P P D++ RA+ PAL H+ +F KG+ P +
Sbjct: 878 APGDNWEDTPDLDGIDILVARAPAHLPSDIQKCRAIFHPALRHLKGVAIFSTKGDVPLAS 937
Query: 635 ECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEK 671
SG D DG+ + CW+ + P + QP P PEK
Sbjct: 938 LLSGGDYDGDEVWACWEPGLVNPFRNQPFQEIPKPEK 974
>gi|238599737|ref|XP_002394960.1| hypothetical protein MPER_05070 [Moniliophthora perniciosa FA553]
gi|215464849|gb|EEB95890.1| hypothetical protein MPER_05070 [Moniliophthora perniciosa FA553]
Length = 346
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 33/171 (19%)
Query: 271 ILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGE 330
+ TP+++ GP + S+R++R Y D+F+R+ F +ED K I G
Sbjct: 158 VTFTPTRMITEGPYPTQSHRIIRRYKGFEDHFIRVDFCEEDRTKYGDDREVDSIPFLKG- 216
Query: 331 RRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE-----LTAADIRE 385
RV + L+ G +G + F+ LA+S S R +++W + + AA IR+
Sbjct: 217 -------RVGNILKRGFPLGGRHFQFLAYSGSGLRSHSVWFMSEFHHPLEGLVNAAKIRD 269
Query: 386 RMGDFRE--------------------IKNVTKYAARLGQSFASSREALHV 416
+GDFR+ +++ +KY ARLG +F ++R ++ +
Sbjct: 270 SIGDFRDLRIEEYPEQERRFYQADQDLLRHPSKYGARLGLAFTATRPSVRI 320
>gi|167375406|ref|XP_001733628.1| RNA-dependent RNA polymerase [Entamoeba dispar SAW760]
gi|165905172|gb|EDR30241.1| RNA-dependent RNA polymerase, putative [Entamoeba dispar SAW760]
Length = 1026
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 82/198 (41%), Gaps = 46/198 (23%)
Query: 497 REVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASN 556
RE+++ T++ ++ AL+++ ++ N K EPF+ S
Sbjct: 549 REIISLFQR-FTNNPVIEVALKMIMAS----------NGNQKIYEEPFIRATSLVLRMSL 597
Query: 557 LLELRTRARIFIQNGQAMMGCLDEKGTLEYGQGL--------------MVVAKKPCLHPG 602
L E + I N +MG +DE G LE G+ ++V K P HPG
Sbjct: 598 LSEKTDFIKFDIDNSAFLMGVMDESGLLEEGEVFIQVTSPTITIPSSRLLVVKFPATHPG 657
Query: 603 DMRVLRAV----------DVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDH 652
D +L V L ++ D ++F +KG RP N+ SG D DG+ Y + W+
Sbjct: 658 DFVLLNNVVDKINLEKKKGYERLTYLRDVIVFSSKGNRPDPNKLSGGDLDGDEYLIIWN- 716
Query: 653 DRIPPLQFQPTAYTPAPE 670
PL + P PE
Sbjct: 717 ----PL------FLPKPE 724
>gi|361130936|gb|EHL02666.1| putative RNA-dependent RNA polymerase 2 [Glarea lozoyensis 74030]
Length = 902
Score = 66.2 bits (160), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 77/182 (42%), Gaps = 34/182 (18%)
Query: 627 KGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYF 686
KG R ++ SG D DG+ Y++ WD P F Y + R V ED+ ++F
Sbjct: 537 KGARDLPSKLSGGDLDGDRYYIMWDELARPKRTFAAADYPKVSPVNIGRRVEREDMSDFF 596
Query: 687 ADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRV 746
++ +D LG I H V A P C + ++ S DFSKTG+ + SR+
Sbjct: 597 LQFMESDQLGRIAVNHRVKADQRPGGTNDPECLLMAEMHSTAVDFSKTGIPVDM-SRMPF 655
Query: 747 --KIYPDF------------------------MEKQDKT-------WYESQHIVGNLYRE 773
K PDF ME +D+ +Y+S+ I+G LYR
Sbjct: 656 GNKYRPDFEAPGPHVHIEEDGINFDDPTFEDPMEIEDEDDEYSTYRYYKSEKILGKLYRA 715
Query: 774 VN 775
++
Sbjct: 716 ID 717
>gi|297832162|ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329803|gb|EFH60222.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 981
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 111/247 (44%), Gaps = 45/247 (18%)
Query: 564 ARIFIQNGQAMMGCLDEKG---------TLEYGQ--GLMVVAKKPCLHPGDMRVLRAVDV 612
R+ + +MG +D G LE GQ G ++V + P LH GD+ +L+A V
Sbjct: 595 GRLPVTESYYLMGTVDPTGELKEDEVCVILESGQISGEVLVYRNPGLHFGDIHILKATYV 654
Query: 613 PALHHMVD----CVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPL--QFQPT--- 663
AL V V FP KG R +E +G D DG++YF+ R P L F+P+
Sbjct: 655 KALEEYVGNSKYAVFFPQKGPRSLGDEIAGGDFDGDMYFI----SRNPELLEHFKPSEPW 710
Query: 664 -AYTP--------APEKILARDVTIEDVEEYF-ADYIVNDSLGIICNAHVVYA------- 706
+ TP AP ++ ++ E E + A + ++ +GI ++ +
Sbjct: 711 VSLTPPSKSNSGRAPSQLSPEELEEELFEMFLKAGFHASNVIGIAADSWLTIMDRLLILG 770
Query: 707 --YSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQ 764
+E M + L+ + D K G +P+ LR I+P +ME++ K ++S
Sbjct: 771 DERAEEKAEMKKKMLKLIDIYYDALDAPKKGDKVYLPNELRPDIFPHYMEREKK--FKST 828
Query: 765 HIVGNLY 771
I+G +Y
Sbjct: 829 SILGLIY 835
>gi|452985629|gb|EME85385.1| hypothetical protein MYCFIDRAFT_83458, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 1527
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 592 VVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWD 651
++A+ P + P DM+ ++AV P L H+ + V+ AKG+RP G D DG+ +++CW+
Sbjct: 1095 LIARNPAMAPWDMQKVKAVFKPELAHLPNVVILSAKGKRPLAELLQGGDYDGDTFWLCWE 1154
Query: 652 HDRIPPLQFQPTAYTPAP 669
+ P + P + P P
Sbjct: 1155 PRLVRPFRNHPAPWDPPP 1172
>gi|388853529|emb|CCF52928.1| uncharacterized protein [Ustilago hordei]
Length = 1363
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 69/166 (41%), Gaps = 24/166 (14%)
Query: 531 ELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ-- 588
E+L G+ P + P+L+ + + + + R I + M D GTLE G+
Sbjct: 778 EMLLVGFHPKSCPYLAELLVEIADNAMKRIIKRFTIPVPRSAEAMVMPDPTGTLEEGEIQ 837
Query: 589 ----------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPA 626
G ++V + PCL P D+R +RAV P L D V+F
Sbjct: 838 FRFSGDRLLDPETRLKLNHVPEGDVLVTRHPCLLPTDIRKVRAVVRPELSTYEDVVVFSI 897
Query: 627 KGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKI 672
KG+ P + G D DG+ V W+ + P Q T Y P +I
Sbjct: 898 KGQGPLASLLGGGDHDGDTIRVFWEPKLVEPFQNSDTKYADCPFEI 943
>gi|346978355|gb|EGY21807.1| RNA-dependent RNA polymerase [Verticillium dahliae VdLs.17]
Length = 1394
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 32/173 (18%)
Query: 523 AENTNVLKELLNCGYKPDAEPFLSMMP--QTFHASNLLELRTRARIFIQNGQAMMGCLDE 580
AE N+L L+ G++P FL M F LL+ + ++ M+ +D
Sbjct: 830 AERVNLL---LDAGFQPKKLSFLREMSYKMAFRKCELLKSKMNIKVGCSTYAKMV--VDF 884
Query: 581 KGTLEYGQ----------------------GL-MVVAKKPCLHPGDMRVLRAVDVPALHH 617
KG LE G+ G+ ++VA+ P P D++ +RAV P L H
Sbjct: 885 KGVLEEGEIHLGFSTKFMDPDGQFSDTLLHGMDVLVARAPAHFPSDIQRVRAVFRPELRH 944
Query: 618 MVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPE 670
+ D ++F KG+ P + SG D DG+ +VCWD + FQ AY P+
Sbjct: 945 LKDVIVFSIKGDSPLADLLSGGDYDGDQAWVCWDSTIVN--SFQNVAYPVVPD 995
>gi|443920944|gb|ELU40764.1| calcium:hydrogen antiporter [Rhizoctonia solani AG-1 IA]
Length = 862
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 101/223 (45%), Gaps = 48/223 (21%)
Query: 271 ILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGE 330
+ +TP+ V+ SNRV+R YP +F+R++F DE G+ ++ T
Sbjct: 522 VKITPTAVHLN----EQSNRVIRRYPGYETHFIRVAFTDEADGRARFEYEVDTMAFTQ-- 575
Query: 331 RRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFAS---RPELTAAD-IRER 386
+RV L+N I + D+++E L +S S REN + A + E+ + IR
Sbjct: 576 ------KRVGKFLKNAIRLCDREYELLGYSQSGFRENACFFVAPFEWKDEIINGEYIRYS 629
Query: 387 MGDFREIKNV-TKYAARLGQSFAS-SREALHVDSNI------------------GKISAE 426
+G+F ++ + +Y AR+ Q+F+S S+ + +S I G IS E
Sbjct: 630 LGNFDKVIDCPARYGARMSQAFSSTSQSTMLQESEIRHIMELKNRRDEMFSDGCGTISRE 689
Query: 427 LAETVAKKCGYAI------------YTPSAFQIRYGGYKVTLR 457
LA+ V K + P AFQIR GG K +R
Sbjct: 690 LAKDVWKSMLQHLPPSRQGFHHENELPPPAFQIRIGGSKGMVR 732
>gi|375281950|gb|AFA45121.1| RNA-directed RNA polymerase 2 [Plenodomus tracheiphilus]
Length = 1382
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 31/166 (18%)
Query: 529 LKELLNCGYKPDAEPFLS--MMPQTFHASNLLELRTRARIFIQNGQA--MMGCLDEKGTL 584
+K LL G+ P PFL+ +M +++E + RA + G A ++G D + L
Sbjct: 880 VKYLLRAGFTPQDSPFLARGLMQLIRQRQSVMEQKLRAPL----GSATFLLGLADPENVL 935
Query: 585 EYGQ----------------------GLMV-VAKKPCLHPGDMRVLRAVDVPALHHMVDC 621
G+ GL V +A++P D++ +R V P L H+ D
Sbjct: 936 RPGEVHINFSSPFVDEFNRQTYRHLDGLEVLIARQPACRQSDIQKVRVVAHPQLAHLRDV 995
Query: 622 VLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTP 667
V+F +G+ P + G D DG+ +++CW+ + P + P P
Sbjct: 996 VVFATRGQYPLAGKLQGGDYDGDTFWICWESILVEPFKNAPAPMNP 1041
>gi|440633788|gb|ELR03707.1| hypothetical protein GMDG_06341 [Geomyces destructans 20631-21]
Length = 1330
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 81/321 (25%), Positives = 126/321 (39%), Gaps = 91/321 (28%)
Query: 416 VDSNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK---------------------- 453
++ G+IS +LA +A+K YTPSAFQ R GG K
Sbjct: 664 MNDGCGQISRKLAHHIAQKLKLD-YTPSAFQARIGGAKGMWIVDVKDFGDKTNIKIYPSQ 722
Query: 454 VTLRNNMF----------------KYKSESTSLDILA--------NSKYQREGVARLRLD 489
V NN F +S + +L L N K R+ ++R+ L+
Sbjct: 723 VKWDNNSFFVDPSHRIFEVICWSRPVRSATLNLQFLPILEDRGRNNGKGMRDALSRV-LE 781
Query: 490 N--VFE-RKQREVVARLDAI----------LTDSSKVQ----EALELMSSAENTNVLKEL 532
N +E +QRE + A +TD +K+ EA S E N+L
Sbjct: 782 NGLTYEISRQREAMDSPQAFRKWVRETAPRITDRNKLGQVGYEAGLPKSQGEKMNLL--- 838
Query: 533 LNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL---EYGQG 589
L+ G+ P FL + + + L+ + I + M+ +D G L E G
Sbjct: 839 LDAGFNPKELCFLRDLAWKANVARGEILKKKLNISVGRSAYMLMVVDFAGILGPREVHVG 898
Query: 590 L--------------------MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGE 629
++VA+ P + D++ +RAV P L + D ++F +G+
Sbjct: 899 FSTAFKDESTDFCDTILSNMDILVARSPAHYTSDIQKVRAVFKPELSALKDVIVFSTRGD 958
Query: 630 RPHTNECSGSDQDGEIYFVCW 650
P E SG D DG+I +VCW
Sbjct: 959 FPLAGELSGGDYDGDIAWVCW 979
>gi|315048949|ref|XP_003173849.1| RNA directed RNA polymerase [Arthroderma gypseum CBS 118893]
gi|311341816|gb|EFR01019.1| RNA directed RNA polymerase [Arthroderma gypseum CBS 118893]
Length = 1245
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 8/136 (5%)
Query: 580 EKGTLEYGQGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGS 639
E GT + ++V++ P P D++ RAV P L H+ + +F KG+ P + SG
Sbjct: 814 EDGTTDLDGIDVLVSRAPAHFPSDVQKCRAVYRPELRHLKNVAIFSTKGKVPLASLLSGG 873
Query: 640 DQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKI-------LARDVTIED-VEEYFADYIV 691
D DG+ +VCW+ + + P P P PE+ RD+ +D +E F +
Sbjct: 874 DYDGDQVWVCWEPEIVKPFVNYPMPDIPKPEEYGLVKVSQRIRDMPFDDFMENSFLFNMW 933
Query: 692 NDSLGIICNAHVVYAY 707
+ LG+ H Y Y
Sbjct: 934 QNPLGLCTFKHEKYCY 949
>gi|449296300|gb|EMC92320.1| hypothetical protein BAUCODRAFT_569676 [Baudoinia compniacensis
UAMH 10762]
Length = 1367
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 591 MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
++VA+ PC+ DM+ LRAV AL + D ++F +G R ++ SG D DG+I +VCW
Sbjct: 794 ILVARNPCIRNSDMQKLRAVSCAALAGIFDVIVFSTQGPRSLASKLSGGDYDGDIAWVCW 853
Query: 651 DHDRIPPLQFQPTAYTPAPEKI 672
D P P PAP K+
Sbjct: 854 D-----PRLVLPFKNAPAPWKL 870
>gi|119370384|gb|ABL68089.1| putative RNA-directed RNA polymerase 2 [Nicotiana attenuata]
Length = 108
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 56/107 (52%), Gaps = 35/107 (32%)
Query: 400 AARLGQSFASSREALHVDS----------------------NIGKISAELAETVAKKCGY 437
AAR+GQ F++S + + V S IGKIS A VA+KCG
Sbjct: 1 AARMGQLFSTSFQTMEVQSPHVEILPDIEVTSDGVSYCFSDGIGKISQAFASQVAQKCGL 60
Query: 438 AIYTPSAFQIRYGGY------------KVTLRNNMFKYKSESTSLDI 472
+ YTPSAFQIRYGGY K++LR +M K++S++ L+I
Sbjct: 61 S-YTPSAFQIRYGGYKGVIAVDRNSFRKLSLRGSMLKFESKNRMLNI 106
>gi|302411624|ref|XP_003003645.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
gi|261357550|gb|EEY19978.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
Length = 1283
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 89/199 (44%), Gaps = 34/199 (17%)
Query: 521 SSAENTNVLKELLNCGYKPDAEPFLSMMP--QTFHASNLLELRTRARIFIQNGQAMMGCL 578
+ AE N+L L+ G++P FL + F LL+ + ++ M+ +
Sbjct: 828 NEAERVNML---LDAGFRPKKLSFLREVSYKMAFRKCELLKSKMNIKVGCSTYAKMV--V 882
Query: 579 DEKGTLEYGQ----------------------GL-MVVAKKPCLHPGDMRVLRAVDVPAL 615
D KG LE G+ G+ ++VA+ P P D++ +RAV P L
Sbjct: 883 DFKGVLEEGEIHLGFSTKFMDPDGQFSDTLLHGMDVLVARAPAHFPSDIQRVRAVFRPEL 942
Query: 616 HHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILAR 675
H+ D ++F KG+ P + SG D DG+ +VCWD + FQ AY P+ L
Sbjct: 943 RHLKDVIVFSIKGDSPLADLLSGGDYDGDQAWVCWDPAIVN--SFQNVAYPVVPD--LFA 998
Query: 676 DVTIEDVEEYFADYIVNDS 694
+E + F D + N+S
Sbjct: 999 LGYLEKRKGTFQDLVQNNS 1017
>gi|302501841|ref|XP_003012912.1| RNA-directed RNA polymerase, putative [Arthroderma benhamiae CBS
112371]
gi|291176473|gb|EFE32272.1| RNA-directed RNA polymerase, putative [Arthroderma benhamiae CBS
112371]
Length = 1125
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 72/167 (43%), Gaps = 18/167 (10%)
Query: 510 SSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQ 569
SS++ E +T L LL+ G+ P F+ + + ++ +I I
Sbjct: 508 SSQIPALNESTFPTNHTAQLNGLLDAGFSPSNLAFVRRLFKENSLGGFVQKLEALKIKIP 567
Query: 570 NGQAMMGCLDEKGTLEYGQ-----------------GL-MVVAKKPCLHPGDMRVLRAVD 611
+ D G LE GQ G+ ++VA+ P P D++ RAV
Sbjct: 568 QSTYVYCIPDPYGVLEEGQIHLDLGDSWEDGTTDLDGIDVLVARAPAHLPSDIQKCRAVF 627
Query: 612 VPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPL 658
PAL ++ +FP KG+ P + SG D DG+ +VCWD + + P
Sbjct: 628 HPALRYLKHVAIFPTKGDVPLASLLSGGDYDGDEVWVCWDQEIVKPF 674
>gi|116208690|ref|XP_001230154.1| hypothetical protein CHGG_03638 [Chaetomium globosum CBS 148.51]
gi|88184235|gb|EAQ91703.1| hypothetical protein CHGG_03638 [Chaetomium globosum CBS 148.51]
Length = 1372
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 23/151 (15%)
Query: 526 TNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLE 585
+ +L LLN G+ P ++ +L + LRT+ I + + +D G LE
Sbjct: 834 SEILHFLLNSGFDPKSQKYLQDLAFELQKQKCDILRTKLNIRVGRSAYIYMVIDFWGVLE 893
Query: 586 YGQ---GL--------------------MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCV 622
+ G ++VA+ P D++ +RAV P LH + D +
Sbjct: 894 ENEVHVGFSSKFRDESDDISYTLLADCDVLVARSPAHFVSDVQKVRAVFKPELHALKDVI 953
Query: 623 LFPAKGERPHTNECSGSDQDGEIYFVCWDHD 653
+F AKG P ++ SG D DG++ +VCWD D
Sbjct: 954 VFSAKGNIPLADKLSGGDYDGDMAWVCWDPD 984
>gi|326475512|gb|EGD99521.1| hypothetical protein TESG_06788 [Trichophyton tonsurans CBS 112818]
Length = 1298
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 568 IQNGQAMMGCLD--EKGTLEYGQGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFP 625
++ GQ + D E GT + ++VA+ P P D++ RAV PAL ++ + +FP
Sbjct: 863 LEEGQIHLDLGDSWEDGTTDLDGIDVLVARAPAHLPSDIQKCRAVFHPALRYLKNVAIFP 922
Query: 626 AKGERPHTNECSGSDQDGEIYFVCWDHDRIPPL 658
KGE P + SG D DG+ +VCWD + + P
Sbjct: 923 TKGEVPLASLLSGGDYDGDEVWVCWDQEIVKPF 955
>gi|122920829|pdb|2J7N|A Chain A, Structure Of The Rnai Polymerase From Neurospora Crassa
gi|122920830|pdb|2J7N|B Chain B, Structure Of The Rnai Polymerase From Neurospora Crassa
gi|122920831|pdb|2J7O|A Chain A, Structure Of The Rnai Polymerase From Neurospora Crassa
Length = 1022
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 92/388 (23%), Positives = 151/388 (38%), Gaps = 88/388 (22%)
Query: 519 LMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCL 578
L S E T L L+N G+ P + +L + L+++ I + +
Sbjct: 487 LPDSQEET--LNFLMNSGFDPKKQKYLQDIAWDLQKRKCDTLKSKLNIRVGRSAYIYMIA 544
Query: 579 DEKGTLEYGQ---GL------------------MVVAKKPCLHPGDMRVLRAVDVPALHH 617
D G LE + G ++VA+ P P D++ +RAV P LH
Sbjct: 545 DFWGVLEENEVHVGFSSKFRDEEESFTLLSDCDVLVARSPAHFPSDIQRVRAVFKPELHS 604
Query: 618 MVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARD- 676
+ D ++F KG+ P + SG D DG++ +VCWD + + P + L +D
Sbjct: 605 LKDVIIFSTKGDVPLAKKLSGGDYDGDMAWVCWDPEIVDGFVNAEMPLEPDLSRYLKKDK 664
Query: 677 -------------------VTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNR 717
T + +++ F + + LG+ N Y + ++SN+
Sbjct: 665 TTFKQLMASHGTGSAAKEQTTYDMIQKSFHFALQPNFLGMCTNYKERLCYI--NNSVSNK 722
Query: 718 CPDLVKLSSIVG---DFSKTGVAATIPS--RLRVKI------YPDFMEKQDKTWY---ES 763
P ++ LSS+VG D SK G+ S +LR ++ PD M K D +W E
Sbjct: 723 -PAII-LSSLVGNLVDQSKQGIVFNEASWAQLRRELLGGALSLPDPMYKSD-SWLGRGEP 779
Query: 764 QHIVGNLY---------REVNGIAPSTTTIKSFAKEGAMQFYDTDME--VNGFKEV---- 808
HI+ L +E+ + K E F+D D+ FKE+
Sbjct: 780 THIIDYLKFSIARPAIDKELEAFHNAMKAAKD--TEDGAHFWDPDLASYYTFFKEISDKS 837
Query: 809 ---AMQFDGFKYRTEYDNKLGNLMDYYG 833
A+ F K N++G + YG
Sbjct: 838 RSSALLFTTLK------NRIGEVEKEYG 859
>gi|42569168|ref|NP_179583.3| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
gi|322967572|sp|O82188.2|RDR5_ARATH RecName: Full=Probable RNA-dependent RNA polymerase 5;
Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase
5
gi|330251850|gb|AEC06944.1| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
Length = 977
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 106/237 (44%), Gaps = 45/237 (18%)
Query: 574 MMGCLDEKGTL---------EYGQ--GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVD-- 620
+MG +D G L E GQ G ++V + P LH GD+ +L+A V AL V
Sbjct: 601 LMGTVDPTGALKEDEVCVILESGQISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNS 660
Query: 621 --CVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPL--QFQPT----AYTP----- 667
V FP KG R +E +G D DG++YF+ R P L F+P+ + TP
Sbjct: 661 KFAVFFPQKGPRSLGDEIAGGDFDGDMYFI----SRNPELLENFKPSEPWVSLTPPSKSN 716
Query: 668 --------APEKILARDVTIEDVEEYFADYIVN---DSLGIICNAHVVYA--YSEPDKAM 714
+PE++ + + A ++ DS I + ++ +E M
Sbjct: 717 SGRAPSQLSPEELEEELFEMFLTAGFHASNVIGIAADSWLTIMDRFLILGDDRAEEKAEM 776
Query: 715 SNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLY 771
+ +L+ + D K G +P++L+ I+P +ME+ K ++S I+G ++
Sbjct: 777 KKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHYMERDKK--FQSTSILGLIF 831
>gi|3687225|gb|AAC62123.1| hypothetical protein [Arabidopsis thaliana]
Length = 929
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 106/237 (44%), Gaps = 45/237 (18%)
Query: 574 MMGCLDEKGTL---------EYGQ--GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVD-- 620
+MG +D G L E GQ G ++V + P LH GD+ +L+A V AL V
Sbjct: 521 LMGTVDPTGALKEDEVCVILESGQISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNS 580
Query: 621 --CVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPL--QFQPT----AYTP----- 667
V FP KG R +E +G D DG++YF+ R P L F+P+ + TP
Sbjct: 581 KFAVFFPQKGPRSLGDEIAGGDFDGDMYFI----SRNPELLENFKPSEPWVSLTPPSKSN 636
Query: 668 --------APEKILARDVTIEDVEEYFADYIVN---DSLGIICNAHVVYA--YSEPDKAM 714
+PE++ + + A ++ DS I + ++ +E M
Sbjct: 637 SGRAPSQLSPEELEEELFEMFLTAGFHASNVIGIAADSWLTIMDRFLILGDDRAEEKAEM 696
Query: 715 SNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLY 771
+ +L+ + D K G +P++L+ I+P +ME+ K ++S I+G ++
Sbjct: 697 KKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHYMERDKK--FQSTSILGLIF 751
>gi|380489167|emb|CCF36884.1| RNA-directed RNA polymerase [Colletotrichum higginsianum]
Length = 1354
Score = 63.2 bits (152), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 86/192 (44%), Gaps = 30/192 (15%)
Query: 521 SSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDE 580
SS E N L ++ G++P ++ +L + + ++ +L + I + + +D
Sbjct: 818 SSEERMNFL---IDGGFEPQSQKYLQDLSWSLRRAHCDKLLKKMSIKVPESAYLFMVIDF 874
Query: 581 KGTLEYGQGLM---------------------VVAKKPCLHPGDMRVLRAVDVPALHHMV 619
LE G+ + +VA+ P D++ ++AV P LH +
Sbjct: 875 WNVLEEGEVHLCFSSKFQTDTFSDSMLHGCDVLVARSPAHFVSDVQRVKAVFKPELHAIK 934
Query: 620 DCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTI 679
D ++F AKG P ++ SG D DG+ +VCWD + + T +P+ E+ L +D T
Sbjct: 935 DVIVFSAKGNVPLADKLSGGDYDGDKAWVCWDPAIVLNFKNAETPASPSLERYLRKDKTT 994
Query: 680 EDVEEYFADYIV 691
FAD +V
Sbjct: 995 ------FADLVV 1000
>gi|119479435|ref|XP_001259746.1| RNA-directed RNA polymerase, putative [Neosartorya fischeri NRRL 181]
gi|119407900|gb|EAW17849.1| RNA-directed RNA polymerase, putative [Neosartorya fischeri NRRL 181]
Length = 1338
Score = 63.2 bits (152), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 12/156 (7%)
Query: 591 MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
++V + P P D++ RAV P L H D ++FP G+ P + SG D DG+ ++CW
Sbjct: 922 VLVGRLPAHVPSDIQRRRAVWKPELRHFKDVIVFPTTGDIPLAHMLSGGDYDGDTPWICW 981
Query: 651 DHD--------RIPPLQFQPTAYTPAPEKILARDV--TIEDVEEYFADYIVNDSLGIICN 700
D + +P ++ P + + RD+ T E ++ F + +LG
Sbjct: 982 DQNIVQRFQNSDLPTEEYPPEHFGLTKHSVSMRDIESTDEFLQSAFTFNLTTSNLGRCTL 1041
Query: 701 AHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGV 736
H AY E S R +L L S + D K GV
Sbjct: 1042 EHEKIAYDE--SIDSARAKELACLLSHLVDGRKGGV 1075
>gi|326483110|gb|EGE07120.1| RNA-directed RNA polymerase [Trichophyton equinum CBS 127.97]
Length = 1286
Score = 62.8 bits (151), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%)
Query: 580 EKGTLEYGQGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGS 639
E GT + ++VA+ P P D++ RAV PAL ++ + +FP KGE P + SG
Sbjct: 865 EDGTTDLDGIDVLVARAPAHLPSDIQKCRAVFHPALRYLKNVAIFPTKGEVPLASLLSGG 924
Query: 640 DQDGEIYFVCWDHDRIPPL 658
D DG+ +VCWD + + P
Sbjct: 925 DYDGDEVWVCWDQEIVKPF 943
>gi|237843439|ref|XP_002371017.1| RNA dependent RNA polymerase domain-containing protein [Toxoplasma
gondii ME49]
gi|211968681|gb|EEB03877.1| RNA dependent RNA polymerase domain-containing protein [Toxoplasma
gondii ME49]
gi|221502280|gb|EEE28013.1| RNA-dependent RNA polymerase, putative [Toxoplasma gondii VEG]
Length = 1186
Score = 62.4 bits (150), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 99/402 (24%), Positives = 160/402 (39%), Gaps = 80/402 (19%)
Query: 261 LDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDN--FLRLSFVDEDLGKLYST 318
L G I V +ILVTP KV G L +R+ R Y +E+ +RL+FV+ED + S+
Sbjct: 296 LRQGGIPVLQILVTPLKVLLKGVYSELGSRLTRQYANEVAAGLLVRLAFVEEDGKAMSSS 355
Query: 319 VLSPQISSTNGERRTRIYERVL-------STLRNGIV---IGDKKFETLAFSNSQERENT 368
+ Q + + E +L S++ G++ +G TL + ++ E
Sbjct: 356 LHRAQDAPLEDRNKELSAEAILSRMGVFNSSISPGVLTKRLGICFSSTLPTIDVRDEEML 415
Query: 369 LWMFASRPELTAA---DIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSNIGKISA 425
L + +TAA + + R GD E + ++ A +L +S E + D + G IS
Sbjct: 416 LVPDVTSSAVTAAMSGEAQRRKGD--EERRISSRAIKLD---PNSPEFIFTDGS-GAISL 469
Query: 426 ELAETVAKKCGYAIYTPSAFQIRYGGYK---------------------VTLRNNMFKYK 464
+L + C A+ T SAFQIR GG K + + +M+K+
Sbjct: 470 DLWRRIV-ACLPALRTSSAFQIRLGGIKGMLLLHPAFPLPRPPAPRLKHLLISQSMYKFH 528
Query: 465 SES-------------------------TSLDILANSKYQRE------GVARLRLDNV-- 491
S S + L L + + R L LD +
Sbjct: 529 SRSRIRKSAEANPGKAKLAWRFSDMASVSLLQCLEINDFSRRLPYFLNRQVILLLDTLGV 588
Query: 492 ----FERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSM 547
F+R QR ++ L I T K + E + ++ E ++ EPFL
Sbjct: 589 EFSVFDRLQRRMLHFLRDIDTRGRKPRRDAESLGTSRFAQTCLEFVSVHGVSPKEPFLRA 648
Query: 548 MPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQG 589
+ S +LR +ARIF++ G + G D +L Y G
Sbjct: 649 CLEAMRNSLADDLRKKARIFVEKGANLFGVPDFTHSLAYDHG 690
>gi|85091735|ref|XP_959047.1| hypothetical protein NCU07534 [Neurospora crassa OR74A]
gi|4803727|emb|CAB42634.1| RNA-dependent RNA polymerase [Neurospora crassa]
gi|28920444|gb|EAA29811.1| predicted protein [Neurospora crassa OR74A]
Length = 1402
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 76/307 (24%), Positives = 125/307 (40%), Gaps = 62/307 (20%)
Query: 519 LMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCL 578
L S E T L L+N G+ P + +L + L+++ I + +
Sbjct: 867 LPDSQEET--LNFLMNSGFDPKKQKYLQDIAWDLQKRKCDTLKSKLNIRVGRSAYIYMIA 924
Query: 579 DEKGTLEYGQ---GL------------------MVVAKKPCLHPGDMRVLRAVDVPALHH 617
D G LE + G ++VA+ P P D++ +RAV P LH
Sbjct: 925 DFWGVLEENEVHVGFSSKFRDEEESFTLLSDCDVLVARSPAHFPSDIQRVRAVFKPELHS 984
Query: 618 MVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARD- 676
+ D ++F KG+ P + SG D DG++ +VCWD + + P + L +D
Sbjct: 985 LKDVIIFSTKGDVPLAKKLSGGDYDGDMAWVCWDPEIVDGFVNAEMPLEPDLSRYLKKDK 1044
Query: 677 -------------------VTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNR 717
T + +++ F + + LG+ N Y + ++SN+
Sbjct: 1045 TTFKQLMASHGTGSAAKEQTTYDMIQKSFHFALQPNFLGMCTNYKERLCYI--NNSVSNK 1102
Query: 718 CPDLVKLSSIVG---DFSKTGVAATIPS--RLRVKI------YPDFMEKQDKTWY---ES 763
P ++ LSS+VG D SK G+ S +LR ++ PD M K D +W E
Sbjct: 1103 -PAII-LSSLVGNLVDQSKQGIVFNEASWAQLRRELLGGALSLPDPMYKSD-SWLGRGEP 1159
Query: 764 QHIVGNL 770
HI+ L
Sbjct: 1160 THIIDYL 1166
>gi|238580928|ref|XP_002389446.1| hypothetical protein MPER_11425 [Moniliophthora perniciosa FA553]
gi|215451719|gb|EEB90376.1| hypothetical protein MPER_11425 [Moniliophthora perniciosa FA553]
Length = 316
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 79/161 (49%), Gaps = 20/161 (12%)
Query: 262 DGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDE-IDNFLRLSFVDEDLGKLYSTVL 320
D G+ + +TP+ + F GP SNRV+R Y E NFLR+SF DE G+L
Sbjct: 48 DDGIFLCMHVQITPTGMIFDGPIPERSNRVIRQYKSEHHHNFLRVSFNDE--GRL-QLQF 104
Query: 321 SPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFAS----RP 376
+ +I + +R RV R G+ + + F L +S S +E+ ++ AS
Sbjct: 105 NREIDGDDFIKR-----RVQPFFREGLRVAGRVFYFLGYSQSALKEHAVYFMASFEQDGK 159
Query: 377 ELTAADIRERMGDFREIKNVTK-------YAARLGQSFASS 410
++T A + E +G F ++ +K YAAR+ Q F ++
Sbjct: 160 QITTASVIESLGSFADLPFDSKLIYCPARYAARISQGFTAT 200
>gi|336470141|gb|EGO58303.1| hypothetical protein NEUTE1DRAFT_82729 [Neurospora tetrasperma FGSC
2508]
gi|350290166|gb|EGZ71380.1| RNA-dependent RNA polymerase [Neurospora tetrasperma FGSC 2509]
Length = 1402
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 23/154 (14%)
Query: 519 LMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCL 578
L S E T L L+N G+ P + +L + L+++ I + +
Sbjct: 867 LPDSQEET--LNFLMNSGFDPKKQKYLQDIAWDLQKRKCDTLKSKLNIRVGRSAYIYMIA 924
Query: 579 DEKGTLEYGQ---GL------------------MVVAKKPCLHPGDMRVLRAVDVPALHH 617
D G LE + G ++VA+ P P D++ +RAV P LH
Sbjct: 925 DFWGVLEENEVHVGFSSKFRDEEESFTLLSDCDVLVARSPAHFPSDIQRVRAVFKPELHS 984
Query: 618 MVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWD 651
+ D ++F KG+ P + SG D DG++ +VCWD
Sbjct: 985 LKDVIIFSTKGDVPLAKKLSGGDYDGDMAWVCWD 1018
>gi|42569164|ref|NP_179581.2| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
gi|322967566|sp|O82190.2|RDR3_ARATH RecName: Full=Probable RNA-dependent RNA polymerase 3;
Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
3
gi|330251848|gb|AEC06942.1| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
Length = 992
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 106/251 (42%), Gaps = 43/251 (17%)
Query: 564 ARIFIQNGQAMMGCLDEKGTLEYGQ-----------GLMVVAKKPCLHPGDMRVLRAVDV 612
R I +MG +D G L+ + G ++V + P LH GD+ VL+A V
Sbjct: 602 GRFPIDESYYIMGTVDPTGELKENEICVILHSGQISGDVLVYRNPGLHFGDIHVLKATYV 661
Query: 613 PALHHMVD----CVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPL--QFQPT--- 663
AL V V FP KG R +E +G D DG++YF+ R P L F+P+
Sbjct: 662 KALEDYVGNAKFAVFFPQKGPRSLGDEIAGGDFDGDMYFIS----RNPKLLEHFKPSEPW 717
Query: 664 AYTPAPEKILA-----RDVTIEDVEEYF-----ADYIVNDSLGII--CNAHVVYAY---- 707
+ P KI E EE F A + D +G+ C ++ +
Sbjct: 718 VSSSKPSKIYCGRKPSELSEEELEEELFKMFLKARFCKRDVIGMAADCWLGIMDPFLTLG 777
Query: 708 SEPDKAMSNRCPDLVKLSSI---VGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQ 764
E K R +++KL I D K G +P L +K +P +ME+ K + S
Sbjct: 778 DESAKEKYERKKNILKLIDIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRST 837
Query: 765 HIVGNLYREVN 775
I+G ++ V+
Sbjct: 838 SILGLIFDTVD 848
>gi|343429506|emb|CBQ73079.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 1287
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 67/153 (43%), Gaps = 24/153 (15%)
Query: 531 ELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ-- 588
E+L G+ P+ +L+ + A + ++ R I + M D GTLE G+
Sbjct: 730 EMLLSGFHPEKCAYLADLLVEIAALAMSKVIKRFAIPVARSAEAMVIPDPTGTLEEGEIQ 789
Query: 589 ----------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPA 626
G ++V + PCL P D+R +RAV P L D V+F
Sbjct: 790 FRFSSDNIVDPDTRLRLTHVPEGQVLVTRHPCLLPTDIRKVRAVVRPELSLYKDVVVFST 849
Query: 627 KGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ 659
KG+RP + SG D DG++ V W+ + P +
Sbjct: 850 KGKRPLASLLSGGDYDGDLIRVFWEPKLVEPFE 882
>gi|3687227|gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana]
Length = 966
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 106/251 (42%), Gaps = 43/251 (17%)
Query: 564 ARIFIQNGQAMMGCLDEKGTLEYGQ-----------GLMVVAKKPCLHPGDMRVLRAVDV 612
R I +MG +D G L+ + G ++V + P LH GD+ VL+A V
Sbjct: 576 GRFPIDESYYIMGTVDPTGELKENEICVILHSGQISGDVLVYRNPGLHFGDIHVLKATYV 635
Query: 613 PALHHMVD----CVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPL--QFQPT--- 663
AL V V FP KG R +E +G D DG++YF+ R P L F+P+
Sbjct: 636 KALEDYVGNAKFAVFFPQKGPRSLGDEIAGGDFDGDMYFIS----RNPKLLEHFKPSEPW 691
Query: 664 AYTPAPEKILA-----RDVTIEDVEEYF-----ADYIVNDSLGII--CNAHVVYAY---- 707
+ P KI E EE F A + D +G+ C ++ +
Sbjct: 692 VSSSKPSKIYCGRKPSELSEEELEEELFKMFLKARFCKRDVIGMAADCWLGIMDPFLTLG 751
Query: 708 SEPDKAMSNRCPDLVKLSSI---VGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQ 764
E K R +++KL I D K G +P L +K +P +ME+ K + S
Sbjct: 752 DESAKEKYERKKNILKLIDIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRST 811
Query: 765 HIVGNLYREVN 775
I+G ++ V+
Sbjct: 812 SILGLIFDTVD 822
>gi|398407389|ref|XP_003855160.1| RNA-directed RNA polymerase [Zymoseptoria tritici IPO323]
gi|339475044|gb|EGP90136.1| RNA-directed RNA polymerase [Zymoseptoria tritici IPO323]
Length = 1316
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 38/152 (25%)
Query: 532 LLNCGYKPDAEPFLS-----MMPQTFHASNLLELRTRA-RIFIQNGQAMMGCLDEKGTLE 585
LL G+ P P+L+ ++ TF +L+ R +I + +MG D KG LE
Sbjct: 782 LLESGFVPTQCPYLARDVIDLVKYTF------DLKQRNFKIRLGRSTTLMGIADPKGCLE 835
Query: 586 YGQ--------------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMV 619
G+ +VA+ P + D++ +R V P L H+
Sbjct: 836 PGEVHVNFSAPFIDPVTKEQFQNLSSPEVAFGLVARNPAMAAWDIQRVRFVYKPELKHLT 895
Query: 620 DCVLFPAKGERPHTNECSGSDQDGEIYFVCWD 651
D +F ++G RP ++ G D DG+ +++CWD
Sbjct: 896 DLAVFSSRGHRPLASKLQGGDYDGDTFWICWD 927
>gi|15419599|gb|AAK97084.1|AF293414_1 RNA-dependent RNA-polymerase [Giardia intestinalis]
Length = 1377
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 27/123 (21%)
Query: 588 QGLMVVAKKPCLHPGDMRVLRAVDV--------------PALHHMV----------DCVL 623
+G +VVAK PC + GD+R+ AV++ P L V +
Sbjct: 606 EGRVVVAKNPCFYRGDVRIYHAVNIFERLRREASRQNLKPVLPSFVAQEAIRGMYRGVIC 665
Query: 624 FPAKGE-RPHTNECSGSDQDGEIYFVCWDHDRIPPLQ--FQPTAYTPAPEKILARDVTIE 680
FP E RP T+ SGSD DG+IY+V WD + +Q ++P ++ P +I A + +
Sbjct: 666 FPKYYEGRPMTDCLSGSDLDGDIYWVSWDASLLGTIQREYEPASFQANPGEIDAHALDLR 725
Query: 681 DVE 683
D+E
Sbjct: 726 DIE 728
>gi|297832164|ref|XP_002883964.1| hypothetical protein ARALYDRAFT_319567 [Arabidopsis lyrata subsp.
lyrata]
gi|297329804|gb|EFH60223.1| hypothetical protein ARALYDRAFT_319567 [Arabidopsis lyrata subsp.
lyrata]
Length = 893
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 111/250 (44%), Gaps = 29/250 (11%)
Query: 564 ARIFIQNGQAMMGCLDEKGTLEYGQGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVD--- 620
R+ I +MG +D G L+ + + V P LH GD+ +L+A V L V
Sbjct: 609 GRLPIDESYYLMGTVDPTGELKEDE--VCVILNPGLHFGDIHILQATYVKTLEQYVGNSK 666
Query: 621 -CVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPL-----QFQPTAYTPAPEKILA 674
V FP KG R +E +G D DG++YF+ R P L +P + P KI
Sbjct: 667 YAVFFPQKGPRSLGDEIAGGDFDGDMYFIS----RNPKLLEHYKPSEPWVSSSPPSKIYT 722
Query: 675 ----RDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGD 730
+++ E +EE + + ++V+ ++ + +R L ++I D
Sbjct: 723 GRKPSELSPEQLEEELFNMFLKTGFS---PSNVIGQAADSWLGIMDRFLTLGDENAI--D 777
Query: 731 FSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREV---NGIAPSTTTIKSF 787
KTG +P ++ ++P +ME+ ++S I+G ++ V N P+ + +
Sbjct: 778 APKTGTEVNLPFDVKADVFPHYMERN--KIFKSISILGLIFDTVDSHNAEDPTPSALGYL 835
Query: 788 AKEGAMQFYD 797
++ +Q ++
Sbjct: 836 SEISKLQCFE 845
>gi|242215346|ref|XP_002473489.1| predicted protein [Postia placenta Mad-698-R]
gi|220727390|gb|EED81310.1| predicted protein [Postia placenta Mad-698-R]
Length = 1162
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 90/212 (42%), Gaps = 52/212 (24%)
Query: 271 ILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLG--KLYSTVLSPQISSTN 328
+ TP+++ GP SN V+R Y D+F+R+ F+DE+L + V P
Sbjct: 348 VTFTPTRMILEGPTRVQSNSVIRKYWPHRDHFIRVDFLDENLSQYRFDREVDGPAF---- 403
Query: 329 GERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMG 388
+++ V L+ G + F+ +S E + + M A R IR +G
Sbjct: 404 ------LHDHVGKVLKGGFEVAGSPFD---YSPDSEMQPAVRMTADR-------IRGALG 447
Query: 389 DFREIKNVTKYAARLGQSFASSREAL----------------------HVDSNIGKISAE 426
D EIK KYAAR+GQ+F S+ ++ H D +G++S
Sbjct: 448 DLSEIKIPAKYAARIGQAFTSTMCSMPISRDQWEEIDEIWEDRENPRSHTD-GVGRLSQA 506
Query: 427 LAETVAK-KCG----YAIY--TPSAFQIRYGG 451
L + + C Y +Y PSA Q R+ G
Sbjct: 507 LMDRIWDIVCNLYPDYGVYGVKPSAVQFRFLG 538
>gi|159120120|ref|XP_001710276.1| RNA-directed RNA polymerase, putative [Giardia lamblia ATCC 50803]
gi|21666386|gb|AAM73688.1|AF393743_1 RNA dependent RNA polymerase [Giardia intestinalis]
gi|157438394|gb|EDO82602.1| RNA-directed RNA polymerase, putative [Giardia lamblia ATCC 50803]
Length = 2001
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 27/123 (21%)
Query: 588 QGLMVVAKKPCLHPGDMRVLRAVDV--------------PALHHMV----------DCVL 623
+G +VVAK PC + GD+R+ AV++ P L V +
Sbjct: 774 EGRVVVAKNPCFYRGDVRIYHAVNIFERLRREASRQNLKPVLPSFVAQEAIRGMYRGVIC 833
Query: 624 FPAKGE-RPHTNECSGSDQDGEIYFVCWDHDRIPPLQ--FQPTAYTPAPEKILARDVTIE 680
FP E RP T+ SGSD DG+IY+V WD + +Q ++P ++ P +I A + +
Sbjct: 834 FPKYYEGRPMTDCLSGSDLDGDIYWVSWDASLLGTIQREYEPASFQANPGEIDAHALDLR 893
Query: 681 DVE 683
D+E
Sbjct: 894 DIE 896
>gi|414588061|tpg|DAA38632.1| TPA: hypothetical protein ZEAMMB73_690745 [Zea mays]
Length = 462
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 127/291 (43%), Gaps = 49/291 (16%)
Query: 527 NVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL-- 584
++L+ +++ G P EP+L + +F A +++ ++ I +MG D GTL
Sbjct: 34 SMLERMIHSGI-PLEEPYL-LSRLSFMAKQEMKVFREGKLPIDECYYLMGTTDPTGTLKP 91
Query: 585 -------EYGQ--GLMVVAKKPCLHPGDMRVLRAVDVPALH-----HMVDCVLFPAKGER 630
+ GQ G ++V K P LH GD+ +L A + L + + +LFP G+R
Sbjct: 92 NEVCVILDSGQYSGDVLVFKHPGLHFGDIHILTARQIDGLEKNFIGYSKNAILFPTSGQR 151
Query: 631 PHTNECSGSDQDGEIYFVCWDH-------DRIPP----LQFQPTAYTPAP-----EKILA 674
+E + SD DG+ ++V ++ R P L+ + T + + E IL
Sbjct: 152 SLADEMANSDFDGDEFWVSRNNMLLKTFEKRSEPWVELLKLKETQHRLSKPGDLNELILE 211
Query: 675 RDVTIEDVEEYFADYIVNDSLGIICN---AHVVYAYSE-----PDKAMSNRCPDLVKLSS 726
R + E + F I N + G+ + AH+ +E K++ LV L
Sbjct: 212 RVLFNECLTTMF---IPNYTKGLAPDCWLAHMDRLLTEGVDQDEKKSIVENMIKLVDLYY 268
Query: 727 IVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGI 777
D G + LRVK YP FMEK+ Y S I+G +Y E I
Sbjct: 269 AALD----GHKVDVDRHLRVKAYPHFMEKKGFESYHSSSILGRIYDETEEI 315
>gi|336268466|ref|XP_003348998.1| hypothetical protein SMAC_02019 [Sordaria macrospora k-hell]
gi|380094257|emb|CCC08474.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1403
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 591 MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
++VA+ P P D++ +RAV P LH + D ++F KG+ P + SG D DG++ +VCW
Sbjct: 959 VLVARSPAHFPSDIQRVRAVFKPELHMLKDVIIFSTKGDIPLAKKLSGGDYDGDMAWVCW 1018
Query: 651 D 651
D
Sbjct: 1019 D 1019
>gi|384493387|gb|EIE83878.1| hypothetical protein RO3G_08583 [Rhizopus delemar RA 99-880]
Length = 1222
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 589 GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFV 648
G ++V + PC D++ ++AVD PAL D ++F KG+ ++ G D DG++ +
Sbjct: 779 GDVIVTRNPCGLKSDVQKVKAVDCPALRMYTDLIIFSVKGDTSLASKLGGGDYDGDLIYC 838
Query: 649 CWDHDRIPPLQFQP 662
CWD + P + P
Sbjct: 839 CWDQRIVEPFKPSP 852
>gi|358377627|gb|EHK15310.1| hypothetical protein TRIVIDRAFT_122493, partial [Trichoderma virens
Gv29-8]
Length = 1284
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%)
Query: 591 MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
++VA+ P P D++ +R V P L + D ++F KG++P + SG D DG++ +VCW
Sbjct: 842 ILVARAPAHFPSDIQRVRVVSRPELRKLKDVIIFSTKGDKPLADMLSGGDYDGDMAWVCW 901
Query: 651 DHDRIPPLQFQPTAYTP 667
D + + P P
Sbjct: 902 DQNIVKNFDNAPMPDKP 918
>gi|46117554|ref|XP_384795.1| hypothetical protein FG04619.1 [Gibberella zeae PH-1]
Length = 1079
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 58/111 (52%), Gaps = 6/111 (5%)
Query: 591 MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
++VA+ P P D++ ++AV P L H+ D V+FP G+ P + SG D DG+ ++CW
Sbjct: 646 VIVARCPAHLPSDIQKVKAVFKPELRHLKDVVVFPFVGQEPLAGKLSGGDYDGDKAWICW 705
Query: 651 DHDRIPPLQFQPTAYTPAPEKIL-ARDVTIEDV-----EEYFADYIVNDSL 695
D D + + P+ A D T+E + + ++ DY++ ++
Sbjct: 706 DADIVDNFRNSEVPQKPSFNGYFEANDHTVESLILKHGKSHYLDYLLEEAF 756
>gi|221481781|gb|EEE20151.1| RNA-dependent RNA polymerase, putative [Toxoplasma gondii GT1]
Length = 1186
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 100/406 (24%), Positives = 157/406 (38%), Gaps = 88/406 (21%)
Query: 261 LDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDN--FLRLSFVDEDLGKLYST 318
L G I V +ILVTP KV G L +R+ R Y +E+ +RL+FV+ED + S+
Sbjct: 296 LRQGGIPVLQILVTPLKVLLKGVYSELGSRLTRQYANEVAAGLLVRLAFVEEDGKAMSSS 355
Query: 319 VLSPQISSTNGERRTRIYERVLSTL--------------RNGIVIGDKKFETLAFSNSQE 364
+ Q + + E +LS L R GI TL + ++
Sbjct: 356 LHRAQDAPLEDRNKELSAEAILSRLGVFNSSISPGVLTKRLGICFSS----TLPTIDVRD 411
Query: 365 RENTLWMFASRPELTAA---DIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSNIG 421
E L + +TAA + + R G+ E + ++ +L +S E + D + G
Sbjct: 412 EEMLLVPDVTSSAVTAAMSGEAQRRKGE--EERRISSRGIKLD---PNSPEFIFTDGS-G 465
Query: 422 KISAELAETVAKKCGYAIYTPSAFQIRYGGYK---------------------VTLRNNM 460
IS +L + C A+ T SAFQIR GG K + + +M
Sbjct: 466 AISLDLWRRIV-ACLPALRTSSAFQIRLGGIKGMLLLHPAFPLPRPPAPRLKHLLISQSM 524
Query: 461 FKYKSES------TSLDILANSKYQREGVAR-------------------------LRLD 489
+K+ S S S A ++ G+A L LD
Sbjct: 525 YKFHSRSRIRKSAESNPGKAKLAWRFSGMASVSFLQCLEINDFSRRLPYFLNRQVILLLD 584
Query: 490 ------NVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEP 543
+VF+R QR ++ L I T K + E + ++ E ++ EP
Sbjct: 585 TLGVEFSVFDRLQRRMLHFLRDIDTRGRKPRREAESLGTSRFAQTCLEFVSVHGVSPKEP 644
Query: 544 FLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQG 589
FL + S +LR + RIF++ G + G D +L Y G
Sbjct: 645 FLRACLEAMRNSLADDLRKKTRIFVEKGANLFGVPDFTHSLAYDHG 690
>gi|253743974|gb|EET00246.1| RNA-directed RNA polymerase, putative [Giardia intestinalis ATCC
50581]
Length = 1989
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 27/134 (20%)
Query: 588 QGLMVVAKKPCLHPGDMRVLRAVD--------------VPALHHMVD----------CVL 623
+G +VVAK PC + GD+RV +AV+ VP+L V +
Sbjct: 778 EGRVVVAKNPCFYRGDVRVYQAVNLLERLKREASEKTLVPSLPPFVTQEAIKAMYKGVIC 837
Query: 624 FPAKGE-RPHTNECSGSDQDGEIYFVCWDHDRIPPLQ--FQPTAYTPAPEKILARDVTIE 680
FP E RP + SGSD DG+IY+V WD I +Q ++P ++ +I +E
Sbjct: 838 FPQYYEGRPMADCLSGSDLDGDIYWVSWDASIIGTIQYEYEPASFQANSGEINTCAPNLE 897
Query: 681 DVEEYFADYIVNDS 694
DVE + + N+S
Sbjct: 898 DVEAGLGNLLRNES 911
>gi|402468935|gb|EJW04011.1| hypothetical protein EDEG_01705 [Edhazardia aedis USNM 41457]
Length = 1964
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 51/97 (52%), Gaps = 18/97 (18%)
Query: 374 SRPELTAAD-IRERMGDFREIKNVTKYAARLGQSFASSREALHVDS-------------- 418
S+ L AD IR+ +G F IKN+ KYA RLGQ+ +S+ + +D+
Sbjct: 1252 SKQILVGADYIRQWLGTFSTIKNIGKYAIRLGQALSSTIGTIEIDNLVCIDDKFFNGYCF 1311
Query: 419 --NIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK 453
IG+I A+ V +C I PSAFQIR GGYK
Sbjct: 1312 TDGIGRIDYSTAKKVC-ECLGIINIPSAFQIRIGGYK 1347
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 15/109 (13%)
Query: 271 ILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGE 330
I+VTP + + P +L NRV+R++ D F+R+SF DE+L S +
Sbjct: 1096 IIVTPLQQIYTYPTKTLGNRVLRTF--NADFFIRVSFKDENL-----------TSVRKYD 1142
Query: 331 RRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELT 379
I+E++ ++ G +IG++K+ LA S SQ + ++ W P LT
Sbjct: 1143 SNKFIFEKIRKIMKEGFLIGNRKYFFLAMSASQLKTHSAWFIC--PYLT 1189
>gi|302782930|ref|XP_002973238.1| hypothetical protein SELMODRAFT_413790 [Selaginella moellendorffii]
gi|300158991|gb|EFJ25612.1| hypothetical protein SELMODRAFT_413790 [Selaginella moellendorffii]
Length = 878
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 115/291 (39%), Gaps = 58/291 (19%)
Query: 558 LELRTRARIFIQNGQAMMGCLDEKGTLEYGQGLMV------------VAKKPCLHPGDMR 605
L+ +A + ++ +MG D TL Q ++ V K P +HPGD+
Sbjct: 445 LKRYAKANVPLEGSYYLMGSADPTNTLARNQVAILLENGPLHRHKVLVYKHPGMHPGDVH 504
Query: 606 VLRAVDVPALHHMVD----CVLFPAKGERPHTNECSGSDQDGEIYFVC------------ 649
V A L + ++FP KG R +E + SD DG++Y++C
Sbjct: 505 VFEATWNQELESCLGNSKYVIIFPTKGPRSVVHEIANSDLDGDLYWICTNEQVSNLYKPQ 564
Query: 650 --WDHDRIPPLQFQPTAYTPAPEKILARDVTI---EDVEEYFADYIVNDSLGIICNAHVV 704
W R P+ +PE I++R V + + FA + I + ++
Sbjct: 565 LPWQEKRTNGTTAVPSCLGMSPEVIMSRLVAMFLRAIFKPNFAISRAATNWLIHMDKYLS 624
Query: 705 YAYSEP-DKAMSNRC-PDLVKLSSIVGDFSKTGVAATIPSRLRV-KIYPDFM-------- 753
++ ++ C +L L + D KTG TI RL KI P F+
Sbjct: 625 TSFDNVREREFRQNCLLELADLYYLALDADKTGEMVTIEDRLLCDKIKPHFLVEENSNNP 684
Query: 754 -----EKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKE--GAMQFYD 797
++QD Y S I G +Y V T I++ AKE G + FY+
Sbjct: 685 NRRKIQQQDNV-YRSTSIFGKIYNLV------TEVIENEAKEFTGPLMFYE 728
>gi|302823993|ref|XP_002993644.1| hypothetical protein SELMODRAFT_431698 [Selaginella moellendorffii]
gi|300138572|gb|EFJ05336.1| hypothetical protein SELMODRAFT_431698 [Selaginella moellendorffii]
Length = 884
Score = 59.7 bits (143), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 115/291 (39%), Gaps = 58/291 (19%)
Query: 558 LELRTRARIFIQNGQAMMGCLDEKGTLEYGQGLMV------------VAKKPCLHPGDMR 605
L+ +A + ++ +MG D TL Q ++ V K P +HPGD+
Sbjct: 451 LKRYAKANVPLEGSYYLMGSADPTNTLARNQVAILLENGPLHRHKVLVYKHPGMHPGDVH 510
Query: 606 VLRAVDVPALHHMVD----CVLFPAKGERPHTNECSGSDQDGEIYFVC------------ 649
V A L + ++FP KG R +E + SD DG++Y++C
Sbjct: 511 VFEATWNQELESSLGNSKYVIIFPTKGPRSVVHEIANSDLDGDLYWICTNEQVSNLYKPQ 570
Query: 650 --WDHDRIPPLQFQPTAYTPAPEKILARDVTI---EDVEEYFADYIVNDSLGIICNAHVV 704
W R P+ +PE I++R V + + FA + I + ++
Sbjct: 571 LPWQEKRTNGTTAVPSCLGMSPEVIMSRLVAMFLRAIFKPNFAISRAATNWLIHMDKYLS 630
Query: 705 YAYSEP-DKAMSNRC-PDLVKLSSIVGDFSKTGVAATIPSRLRV-KIYPDFM-------- 753
++ ++ C +L L + D KTG TI RL KI P F+
Sbjct: 631 TSFDNVREREFRQNCLLELADLYYLALDADKTGEMVTIEDRLLCDKIKPHFLVEENSNNP 690
Query: 754 -----EKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKE--GAMQFYD 797
++QD Y S I G +Y V T I++ AKE G + FY+
Sbjct: 691 NRRKIQQQDNV-YRSTSIFGKIYNVV------TEVIENEAKEFTGPLMFYE 734
>gi|310799490|gb|EFQ34383.1| RNA-directed RNA polymerase [Glomerella graminicola M1.001]
Length = 1348
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 21/148 (14%)
Query: 525 NTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL 584
N ++ L++ G+ P + +L + S L+ + I + N + +D L
Sbjct: 823 NEEIMNSLIDAGFDPRRQRYLQELAWNLRYSLCESLKKKMSIKVSNSAYLFMVVDFWNVL 882
Query: 585 EYGQGLM---------------------VVAKKPCLHPGDMRVLRAVDVPALHHMVDCVL 623
E G+ + +VA+ P D++ ++AV P LH + D ++
Sbjct: 883 EEGEVHLCFSSKFQTDTFSDSILHGCDVLVARSPAHFVSDIQRVKAVFKPELHTIKDVIV 942
Query: 624 FPAKGERPHTNECSGSDQDGEIYFVCWD 651
F AKG P ++ SG D DG+ +VCW+
Sbjct: 943 FSAKGNVPLADKLSGGDYDGDKAWVCWE 970
>gi|242790556|ref|XP_002481575.1| RNA-directed RNA polymerase, putative [Talaromyces stipitatus ATCC
10500]
gi|218718163|gb|EED17583.1| RNA-directed RNA polymerase, putative [Talaromyces stipitatus ATCC
10500]
Length = 1360
Score = 59.3 bits (142), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 75/172 (43%), Gaps = 12/172 (6%)
Query: 591 MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
++V + P P D++ RAV L H D ++F KG P + SG D DG+ +VCW
Sbjct: 929 VLVGRTPAHCPWDIQRRRAVWKSELRHFKDVIVFSTKGTTPLASLLSGGDYDGDRTWVCW 988
Query: 651 DHDRIPPL-QFQPTAYTPAPEKI----LARDV-TIEDVEEYFADY----IVNDSLGIICN 700
D + P A P PE AR + T+ VE+ + + +LG
Sbjct: 989 DSGIVESFTNTTPPAIEPGPEHFGLVKHARPMETVSSVEDMLQNTFKFNLATTNLGQCTV 1048
Query: 701 AHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIP--SRLRVKIYP 750
H AY E + S +L L S + D +K+G+ T +R R I P
Sbjct: 1049 EHNKLAYDEKEGISSPLSLELATLLSHLVDSTKSGLQLTEEQWARYRKSISP 1100
>gi|401412157|ref|XP_003885526.1| hypothetical protein NCLIV_059230 [Neospora caninum Liverpool]
gi|325119945|emb|CBZ55498.1| hypothetical protein NCLIV_059230 [Neospora caninum Liverpool]
Length = 1367
Score = 59.3 bits (142), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 78/304 (25%), Positives = 120/304 (39%), Gaps = 72/304 (23%)
Query: 266 IYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDN--FLRLSFVDEDLGKLYSTVLSPQ 323
I V +L TP KV G L +RV R Y E+ +R++FV+ED G+ P
Sbjct: 525 IPVLHLLATPLKVLVRGIYCELGSRVTRQYAREVATGLLVRVAFVEED-GR-------PM 576
Query: 324 ISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMF--ASRPELTAA 381
SS + + + ER+ + G+ +G ++++ A S SQ RE WM + L+A
Sbjct: 577 SSSLHRAQDESLQERMRLMMVGGLSVGHERYKFFAASLSQLREGCCWMIRVSGDTRLSAE 636
Query: 382 DIRERMGDFREIKNVTKYAARLGQSFASSREA---------------------------- 413
I R+G F + RLG F+S+ A
Sbjct: 637 AILSRLGVFDSSISPGVLTKRLGVCFSSTLPAIDIRDEEMLLIPDVTSSAAAPTAREEAA 696
Query: 414 -------------LHVDS-------NIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK 453
L VDS G IS +L + + A++T SAFQIR GG K
Sbjct: 697 ENEGRQARARPIPLAVDSPEFVFTDGSGAISLDLWRRIVARL-PALHTSSAFQIRLGGIK 755
Query: 454 VTL------RNNMFKYKSESTSLDILANSKYQREGVARLRLDNVFERK-----QREVVAR 502
L + + +ES +++ S + +R N F R+ R+V+
Sbjct: 756 GMLVLHPAFPRPVPHHPAESLKHILVSQSMQKFHSSSRCLEVNDFSRRFPYYLNRQVILL 815
Query: 503 LDAI 506
LD +
Sbjct: 816 LDTL 819
>gi|159126570|gb|EDP51686.1| RNA-directed RNA polymerase, putative [Aspergillus fumigatus A1163]
Length = 1318
Score = 59.3 bits (142), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 12/156 (7%)
Query: 591 MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
++V + P P D++ RAV L H D ++FP G+ P + SG D DG+ ++CW
Sbjct: 902 VLVGRLPAHVPSDIQRRRAVWKTELRHFKDVIVFPTTGDIPLAHMLSGGDYDGDTPWICW 961
Query: 651 DHD--------RIPPLQFQPTAYTPAPEKILARDV--TIEDVEEYFADYIVNDSLGIICN 700
D + +P ++ P + + RD+ T E ++ F + +LG
Sbjct: 962 DQNIVQRFQNSDLPTEEYPPEHFGLTKHSVSMRDIQSTDEFLQSAFTFNLTTSNLGRCTV 1021
Query: 701 AHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGV 736
H AY E S R +L L S + D K GV
Sbjct: 1022 EHEKIAYDE--SIDSARAKELACLLSHLVDGRKGGV 1055
>gi|358392113|gb|EHK41517.1| hypothetical protein TRIATDRAFT_321718 [Trichoderma atroviride IMI
206040]
Length = 1316
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 591 MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
++VA+ P P D++ +R V P L + D ++F KG P ++ SG D DG+I +VCW
Sbjct: 870 ILVARAPAHLPSDIQRVRVVSRPELRRLKDVIIFSTKGSVPLADKLSGGDYDGDIAWVCW 929
Query: 651 DH 652
D
Sbjct: 930 DQ 931
>gi|70997928|ref|XP_753696.1| RNA-directed RNA polymerase [Aspergillus fumigatus Af293]
gi|66851332|gb|EAL91658.1| RNA-directed RNA polymerase, putative [Aspergillus fumigatus Af293]
Length = 1318
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 12/156 (7%)
Query: 591 MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
++V + P P D++ RAV L H D ++FP G+ P + SG D DG+ ++CW
Sbjct: 902 VLVGRLPAHVPSDIQRRRAVWKTELRHFKDVIVFPTTGDIPLAHMLSGGDYDGDTPWICW 961
Query: 651 DHD--------RIPPLQFQPTAYTPAPEKILARDV--TIEDVEEYFADYIVNDSLGIICN 700
D + +P ++ P + + RD+ T E ++ F + +LG
Sbjct: 962 DQNIVQRFQNSDLPTEEYPPEHFGLTKHPVSMRDIQSTDEFLQSAFTFNLTTSNLGRCTV 1021
Query: 701 AHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGV 736
H AY E S R +L L S + D K GV
Sbjct: 1022 EHEKIAYDE--SIDSARAKELACLLSHLVDGRKGGV 1055
>gi|121713002|ref|XP_001274112.1| RNA-directed RNA polymerase, putative [Aspergillus clavatus NRRL 1]
gi|119402265|gb|EAW12686.1| RNA-directed RNA polymerase, putative [Aspergillus clavatus NRRL 1]
Length = 1313
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 18/159 (11%)
Query: 591 MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
++V + P P D++ RAV P L H D ++FP G+ P + SG D DG++ ++CW
Sbjct: 900 VLVGRLPAHVPSDIQRRRAVWKPELRHFKDVIVFPTAGDIPLAHMLSGGDYDGDMPWICW 959
Query: 651 DHDRI-------------PPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGI 697
D + + PP F T ++ +I + D E ++ F + LG
Sbjct: 960 DQNMVQDFRNSGLPTEEFPPEHFGLTKHSVPMMQIQSTD---EFLQSAFTFNLTMSKLGR 1016
Query: 698 ICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGV 736
H +Y E S R +L L S + D K GV
Sbjct: 1017 CTVEHEKLSYDE--SIDSARAKELACLLSHLVDGRKGGV 1053
>gi|115435090|ref|NP_001042303.1| Os01g0197900 [Oryza sativa Japonica Group]
gi|56201770|dbj|BAD73220.1| unknown protein [Oryza sativa Japonica Group]
gi|56201877|dbj|BAD73327.1| unknown protein [Oryza sativa Japonica Group]
gi|113531834|dbj|BAF04217.1| Os01g0197900 [Oryza sativa Japonica Group]
Length = 387
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 99/223 (44%), Gaps = 35/223 (15%)
Query: 584 LEYGQ--GLMVVAKKPCLHPGDMRVLRAVDVPALH-----HMVDCVLFPAKGERPHTNEC 636
LE GQ G ++V K P LH GD+ VL+A + L + +LFP G R +E
Sbjct: 19 LENGQFSGDVLVYKHPGLHFGDIHVLKATYIRDLEKEYVGYAKYAILFPISGPRSLADEM 78
Query: 637 SGSDQDGEIYFVCWDHDRIPPL--QFQPT-AYTPAPEKILARDVTIEDVEE------YFA 687
+ SD DG+IY+V + P L F+P+ + A + + +D E F
Sbjct: 79 ANSDFDGDIYWV----SKNPKLLEHFKPSEPWVQAIKPKKTKQKKPQDCNESKLERLLFH 134
Query: 688 DYIVND-----SLGIICNAHVVY-------AYSEPDKAM-SNRCPDLVKLSSIVGDFSKT 734
+++ +LG ++ + Y + E +K + + LV L + D KT
Sbjct: 135 EFLKTRFTPSFALGTAADSWLAYMDRLLTDSLDEIEKKLIEEKMLKLVDLYYLALDAPKT 194
Query: 735 GVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGI 777
G IPS L VK YP FM + Y S I+G +Y + +
Sbjct: 195 GNKVNIPSDLMVKQYPHFMGRSFS--YHSSSILGQIYDKAEDV 235
>gi|297832166|ref|XP_002883965.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329805|gb|EFH60224.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 934
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 100/231 (43%), Gaps = 33/231 (14%)
Query: 574 MMGCLDEKGTLEYGQ-GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVD----CVLFPAKG 628
+ L+E T+ Y + V + P LH GD+ VL+A V AL V V FP KG
Sbjct: 564 LRNTLEESKTIFYSERAAFKVYRNPGLHFGDIHVLKATYVKALEDYVGNSKYAVFFPQKG 623
Query: 629 ERPHTNECSGSDQDGEIYFVCWDHDRIPPL--QFQPT---AYTPAPEKILA-----RDVT 678
R +E +G D DG++YF+ R P L F+P+ + P KI +
Sbjct: 624 PRSLGDEIAGGDFDGDMYFIS----RNPKLLEYFKPSEPWVSSSKPSKIYSGRKPSELSE 679
Query: 679 IEDVEEYF-----ADYIVNDSLGIICNAH------VVYAYSEPDKAMSNRCPDLVKLSSI 727
E EE F A + D +G+ + ++ E K R +++KL I
Sbjct: 680 EELEEELFKMFLKARFCKRDVIGMAADCWLGIMDPLLTLGDESAKEKYERKKNILKLIDI 739
Query: 728 ---VGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVN 775
D K G +P L +K +P +ME+ K + S I+G ++ V+
Sbjct: 740 YYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIFDTVD 790
>gi|340959153|gb|EGS20334.1| RNA polymerase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1441
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 63/147 (42%), Gaps = 25/147 (17%)
Query: 532 LLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ--- 588
LLN G+ P + +L + L+T+ I + + +D G LE +
Sbjct: 877 LLNSGFDPKKQKYLQKLAWELQYQRCELLKTKLNIKVGRSAYVYMVVDFWGMLEENEVHL 936
Query: 589 GL----------------------MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPA 626
G ++VA+ P D++ +RAV P LH + D ++FP
Sbjct: 937 GFSSRFCANTDLDQESFTLLADCDVLVARSPAHFVSDVQKVRAVFKPELHALKDVIVFPL 996
Query: 627 KGERPHTNECSGSDQDGEIYFVCWDHD 653
KG ++ SG D DG++ +VCWD D
Sbjct: 997 KGNVALADKLSGGDYDGDMAWVCWDPD 1023
>gi|407919378|gb|EKG12628.1| RNA-dependent RNA polymerase eukaryotic-type [Macrophomina phaseolina
MS6]
Length = 1485
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 68/158 (43%), Gaps = 14/158 (8%)
Query: 591 MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
++VA+ P L D++ +R+ L H+ D V+FP +G P + G D DG+ +++CW
Sbjct: 984 VLVARNPALRASDIQKVRSTFNLRLGHLKDVVVFPTRGTFPLAGKLQGGDYDGDTFWICW 1043
Query: 651 DHDRIPPLQFQPTAYT-PAPEKILAR------------DVTIEDVEEYFADYIVNDSLGI 697
+ + + P + P P P+K + D E + E F LG
Sbjct: 1044 EPEMVEPFKNAPPPLEDPDPKKCQIKVDKRKLADMCKGDSISEFLRESFKFRCKPSLLGQ 1103
Query: 698 ICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTG 735
H Y E A + R L L ++ D+SK G
Sbjct: 1104 ATKFHERLVYMEGSLA-TERSRALADLHDLLVDYSKNG 1140
>gi|251765119|sp|Q5QMN5.2|RDR3_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 3; Short=OsRDR3
Length = 1153
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 106/247 (42%), Gaps = 44/247 (17%)
Query: 563 RARIFIQNGQAMMGCLDEKGTL---------EYGQ--GLMVVAKKPCLHPGDMRVLRAVD 611
+ +I I +M D GTL E GQ G ++V K P LH GD+ VL+A
Sbjct: 764 QGKIPIDECYYLMDTTDPTGTLRPNEVCVILENGQFSGDVLVYKHPGLHFGDIHVLKATY 823
Query: 612 VPALH-----HMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPL--QFQPT- 663
+ L + +LFP G R +E + SD DG+IY+V + P L F+P+
Sbjct: 824 IRDLEKEYVGYAKYAILFPISGPRSLADEMANSDFDGDIYWV----SKNPKLLEHFKPSE 879
Query: 664 AYTPAPEKILARDVTIEDVEE------YFADYIVND-----SLGIICNAHVVY------- 705
+ A + + +D E F +++ +LG ++ + Y
Sbjct: 880 PWVQAIKPKKTKQKKPQDCNESKLERLLFHEFLKTRFTPSFALGTAADSWLAYMDRLLTD 939
Query: 706 AYSEPDKAM-SNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQ 764
+ E +K + + LV L + D KTG IPS L VK YP FM + Y S
Sbjct: 940 SLDEIEKKLIEEKMLKLVDLYYLALDAPKTGNKVNIPSDLMVKQYPHFMGRSFS--YHSS 997
Query: 765 HIVGNLY 771
I+G +Y
Sbjct: 998 SILGQIY 1004
>gi|242216941|ref|XP_002474274.1| predicted protein [Postia placenta Mad-698-R]
gi|220726566|gb|EED80511.1| predicted protein [Postia placenta Mad-698-R]
Length = 998
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 88/387 (22%), Positives = 149/387 (38%), Gaps = 83/387 (21%)
Query: 343 LRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNV---TKY 399
+R+G+++ D+ + L F++ +E L F + A + +G+ R++ + KY
Sbjct: 71 MRDGLLLRDEHYTFLGFTDGHVKEGKLVFFREDASWSVARFMDYIGNLRDVYSAYGYGKY 130
Query: 400 AARLGQSFASSREALHV-------------------DSNIGKISAELAETVAKKCGYAIY 440
AARL SF+S+ E+L V G I A V + G A
Sbjct: 131 AARLALSFSSTVESLDVPFVKAARIPDRRARDGSLHSDGCGLIRHSFAMDVCRNNGIAPD 190
Query: 441 TPSAFQIRYGGYK---VTLRNNMFKYKSESTSLDILANSKYQREGVARLRLDNVFERKQR 497
T FQIR GG K V +N F + +L R + R +FE+ +
Sbjct: 191 T-CVFQIRRGGIKGLLVRYPDNQF----DKVTL---------RMAIRRA----IFEKMLQ 232
Query: 498 EVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNCGY--KPD-AEPFLSMMPQTFHA 554
+ + + IL + + ++ ++ A NT + L K D EP++ + F
Sbjct: 233 DQLDLIGCILHNRDQAEKYIKGELDASNTTAFNQDLYAILLAKHDLNEPYVEWKLRQFQQ 292
Query: 555 SNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQGLMVVAKKPCLHPGDMRVLRAVDVPA 614
L + + +++ + G +DE G LE + + + PG VL
Sbjct: 293 QQCNLLHKKLNLRVEDSCYVFGVIDESGVLEEDEVFLNL-------PGRTGVL------- 338
Query: 615 LHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPT--AYTPA---- 668
D ++ G D DG+ YFV W+ IP +P A TP
Sbjct: 339 ---TRDVIV--------------GRDLDGDEYFVTWEPGLIPRDMPEPQHRAGTPTANTK 381
Query: 669 PEKILARDVTIEDVEEYFADYIVNDSL 695
P + L D + + F + N +L
Sbjct: 382 PPRRLTEDAMNDAALDTFIRHKYNKTL 408
>gi|342876307|gb|EGU77937.1| hypothetical protein FOXB_11547 [Fusarium oxysporum Fo5176]
Length = 821
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 21/154 (13%)
Query: 523 AENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKG 582
A+ + L + G++P FL+ M ++ T+ I I + + +D +G
Sbjct: 314 ADWPGTMSFLADGGFEPRRLDFLNTMMFNHQKQRWKQMETKLHIKIAKSTSALMTIDFQG 373
Query: 583 TL---------------------EYGQGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDC 621
L + G ++V + P P D++ + AV P L H +
Sbjct: 374 VLAPNEVQLCFSPAFDDGQQTLDDLGGFDVLVGRCPAHLPSDIQKVNAVFKPELRHFKNV 433
Query: 622 VLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRI 655
++F + G+ P N+ SG D DG+ +VCWD D +
Sbjct: 434 IIFSSLGDEPLANKLSGGDYDGDKAWVCWDADIV 467
>gi|42569166|ref|NP_179582.2| RNA-dependent RNA polymerase family protein [Arabidopsis thaliana]
gi|322967571|sp|O82189.2|RDR4_ARATH RecName: Full=Probable RNA-dependent RNA polymerase 4;
Short=AtRDRP4; AltName: Full=RNA-directed RNA polymerase
4
gi|330251849|gb|AEC06943.1| RNA-dependent RNA polymerase family protein [Arabidopsis thaliana]
Length = 927
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 74/293 (25%), Positives = 129/293 (44%), Gaps = 56/293 (19%)
Query: 539 PDAEPFLSMMPQTFHASNLLELRT----RARIFIQNGQAMMGCLDEKGTLEYGQ--GL-- 590
P EP+L + S LL+L ++ I +MG +D G L+ + GL
Sbjct: 571 PLDEPYLK-----HYLSKLLKLEKDDLKAGKLPIDESYYLMGTVDPTGELKEDEVSGLAK 625
Query: 591 ---MVVAKKPCLHPGDMRVLRAVDVPALHHMVD----CVLFPAKGERPHTNECSGSDQDG 643
++V + P LH GD+ +L+A V +L V V FP KG R +E +G D DG
Sbjct: 626 SQDVLVYRNPGLHFGDIHILKATYVKSLEQYVGNSKYGVFFPQKGPRSLGDEIAGGDFDG 685
Query: 644 EIYFVCWDHDRIPPL--QFQPT----AYTPAPEKILAR---DVTIEDVEEYFADYIVNDS 694
++YF+ R P L ++P+ + +P + R +++ E +EE +
Sbjct: 686 DMYFIS----RNPKLLEHYKPSEPWVSSSPRSKIYTGRQPSELSPEQLEEELFKIFLKTG 741
Query: 695 LGIICNAHVVYAYSEPDKAMSNRCPDL---------------VKLSSI---VGDFSKTGV 736
+ V+ ++ A+ +R L +KL+ I D KTG
Sbjct: 742 F---SPSSVIGQAADSWLAIMDRFLTLGDENVKEKAEMKKKMLKLTDIYYDAIDAPKTGT 798
Query: 737 AATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAK 789
+P ++V ++P +ME+ +KT ++S I+G ++ V+ TT +K
Sbjct: 799 EVNLPLDVKVDLFPHYMER-NKT-FKSTSILGLIFDTVDFHNAEDTTPSGISK 849
>gi|453087546|gb|EMF15587.1| hypothetical protein SEPMUDRAFT_123844 [Mycosphaerella populorum
SO2202]
Length = 1406
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 591 MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
++VA+ P + P D++ +RAV P L ++F A+G RP N+ G D DG+ ++ W
Sbjct: 986 ILVARNPAMGPSDIQKVRAVFKPQLAKYAGNIIFSARGMRPLANKLQGGDYDGDAFWFTW 1045
Query: 651 DHDRIPPLQFQPTAYTPAPEK 671
+ PL +P PAP K
Sbjct: 1046 E-----PLLTEPFKNAPAPWK 1061
>gi|222617920|gb|EEE54052.1| hypothetical protein OsJ_00745 [Oryza sativa Japonica Group]
Length = 1243
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 106/247 (42%), Gaps = 44/247 (17%)
Query: 563 RARIFIQNGQAMMGCLDEKGTL---------EYGQ--GLMVVAKKPCLHPGDMRVLRAVD 611
+ +I I +M D GTL E GQ G ++V K P LH GD+ VL+A
Sbjct: 845 QGKIPIDECYYLMDTTDPTGTLRPNEVCVILENGQFSGDVLVYKHPGLHFGDIHVLKATY 904
Query: 612 VPALH-----HMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPL--QFQPT- 663
+ L + +LFP G R +E + SD DG+IY+V + P L F+P+
Sbjct: 905 IRDLEKEYVGYAKYAILFPISGPRSLADEMANSDFDGDIYWV----SKNPKLLEHFKPSE 960
Query: 664 AYTPAPEKILARDVTIEDVEE------YFADYIVND-----SLGIICNAHVVY------- 705
+ A + + +D E F +++ +LG ++ + Y
Sbjct: 961 PWVQAIKPKKTKQKKPQDCNESKLERLLFHEFLKTRFTPSFALGTAADSWLAYMDRLLTD 1020
Query: 706 AYSEPDKAM-SNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQ 764
+ E +K + + LV L + D KTG IPS L VK YP FM + Y S
Sbjct: 1021 SLDEIEKKLIEEKMLKLVDLYYLALDAPKTGNKVNIPSDLMVKQYPHFMGRSFS--YHSS 1078
Query: 765 HIVGNLY 771
I+G +Y
Sbjct: 1079 SILGQIY 1085
>gi|429856861|gb|ELA31752.1| RNA-dependent RNA polymerase [Colletotrichum gloeosporioides Nara
gc5]
Length = 1365
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 21/148 (14%)
Query: 525 NTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL 584
N + L++ G++P + F+ + L+ + I I N +D G L
Sbjct: 842 NEETMNFLIDGGFEPSKQKFIQDIAWNLRRQKCENLKKKMSIKIPNSAYFYMVIDFWGVL 901
Query: 585 EYGQGLM---------------------VVAKKPCLHPGDMRVLRAVDVPALHHMVDCVL 623
E + + +VA+ P D++ ++AV P LH + D ++
Sbjct: 902 EENEVHLCFSSKFQTESFSDSMLHGCDVLVARSPAHFVSDVQRVKAVFKPELHALKDVIV 961
Query: 624 FPAKGERPHTNECSGSDQDGEIYFVCWD 651
F AKG+ P ++ SG D DG+ +VCW+
Sbjct: 962 FSAKGDIPLADKLSGGDYDGDKAWVCWE 989
>gi|3687226|gb|AAC62124.1| hypothetical protein [Arabidopsis thaliana]
Length = 905
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 121/272 (44%), Gaps = 51/272 (18%)
Query: 539 PDAEPFLSMMPQTFHASNLLELRT----RARIFIQNGQAMMGCLDEKGTLEYGQGLMVVA 594
P EP+L + S LL+L ++ I +MG +D G L+ + + V
Sbjct: 576 PLDEPYLK-----HYLSKLLKLEKDDLKAGKLPIDESYYLMGTVDPTGELKEDE--VCVI 628
Query: 595 KKPCLHPGDMRVLRAVDVPALHHMVD----CVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
P LH GD+ +L+A V +L V V FP KG R +E +G D DG++YF+
Sbjct: 629 LNPGLHFGDIHILKATYVKSLEQYVGNSKYGVFFPQKGPRSLGDEIAGGDFDGDMYFIS- 687
Query: 651 DHDRIPPL--QFQPT----AYTPAPEKILAR---DVTIEDVEEYFADYIVNDSLGIICNA 701
R P L ++P+ + +P + R +++ E +EE + +
Sbjct: 688 ---RNPKLLEHYKPSEPWVSSSPRSKIYTGRQPSELSPEQLEEELFKIFLKTGF---SPS 741
Query: 702 HVVYAYSEPDKAMSNRCPDL---------------VKLSSI---VGDFSKTGVAATIPSR 743
V+ ++ A+ +R L +KL+ I D KTG +P
Sbjct: 742 SVIGQAADSWLAIMDRFLTLGDENVKEKAEMKKKMLKLTDIYYDAIDAPKTGTEVNLPLD 801
Query: 744 LRVKIYPDFMEKQDKTWYESQHIVGNLYREVN 775
++V ++P +ME+ +KT ++S I+G ++ V+
Sbjct: 802 VKVDLFPHYMER-NKT-FKSTSILGLIFDTVD 831
>gi|297848118|ref|XP_002891940.1| hypothetical protein ARALYDRAFT_892768 [Arabidopsis lyrata subsp.
lyrata]
gi|297337782|gb|EFH68199.1| hypothetical protein ARALYDRAFT_892768 [Arabidopsis lyrata subsp.
lyrata]
Length = 117
Score = 57.0 bits (136), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 222 ALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFC 281
AL L L ECCY SWL+++Y Q P S +L+G ++Y++++ VTP++VYFC
Sbjct: 58 ALAKLRCLNECCYTLASWLKQEYTDWGKKTQPPRSKE-SLEGVVVYIHQVKVTPTRVYFC 116
Query: 282 G 282
G
Sbjct: 117 G 117
>gi|308161550|gb|EFO63991.1| RNA-directed RNA polymerase, putative [Giardia lamblia P15]
Length = 1999
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 27/134 (20%)
Query: 588 QGLMVVAKKPCLHPGDMRVLRAVDV-----------------------PALHHMVDCVL- 623
+G ++VAK PC + GD+R+ +AV++ A+ M V+
Sbjct: 774 EGRVIVAKNPCFYRGDVRIYQAVNIFERLKQETSRQKLKAVLPSFVTREAIRGMYRGVIC 833
Query: 624 FPAKGE-RPHTNECSGSDQDGEIYFVCWDHDRIPPLQ--FQPTAYTPAPEKILARDVTIE 680
FP E RP T+ SGSD DG+IY+V WD + +Q ++P ++ P +I ++
Sbjct: 834 FPKYYEGRPMTDCLSGSDLDGDIYWVSWDASLLGTIQREYEPASFQARPGEIDICTPDLK 893
Query: 681 DVEEYFADYIVNDS 694
D+E + + DS
Sbjct: 894 DIEAGLGNLLRIDS 907
>gi|342881586|gb|EGU82475.1| hypothetical protein FOXB_07061 [Fusarium oxysporum Fo5176]
Length = 1387
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 69/162 (42%), Gaps = 21/162 (12%)
Query: 527 NVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEY 586
+++ +L+ G+ FL M +L+ + I I +D GTLE
Sbjct: 874 DIISYMLDAGFDATKCRFLRDMVWNNQKRQADQLKAKMNIKIPRSTYAFMTVDFTGTLEE 933
Query: 587 GQ--------------------GL-MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFP 625
G+ G+ ++VA+ P D++ ++AV P L + D ++F
Sbjct: 934 GEVQLAFSSKFQADGESDTLLDGIDILVARAPAHFVSDIQKVKAVFRPNLKRLKDVIVFS 993
Query: 626 AKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTP 667
+KG+ P + SG D DG++ ++CWD D + P P
Sbjct: 994 SKGKSPLADMLSGGDYDGDLAWICWDPDVVNNFHNAPKPVEP 1035
>gi|358369575|dbj|GAA86189.1| RNA-directed RNA polymerase [Aspergillus kawachii IFO 4308]
Length = 1306
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 11/156 (7%)
Query: 591 MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
++V + P P D++ AV L H D ++FP+ G P + SG D DG+ ++CW
Sbjct: 891 VLVGRLPAHLPSDIQRRTAVWKQELRHFKDVIVFPSVGNIPLAHMLSGGDYDGDTPWICW 950
Query: 651 DHDRI--------PPLQFQPTAYTPAPEKILARDVTIED--VEEYFADYIVNDSLGIICN 700
D + + P +F P Y + +D+ D ++ F + +LG
Sbjct: 951 DQNIVRNFYNSGLPDTEFPPEHYGLTKYAVDMKDIQSMDEFLQSSFTFNLTLSNLGRCTV 1010
Query: 701 AHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGV 736
H + AY E + S++ +L L S + D K GV
Sbjct: 1011 EHEMIAYDE-ESIDSDKAKELACLLSHLVDGRKAGV 1045
>gi|83773600|dbj|BAE63727.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1260
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 591 MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
++VA+ P P D++ RAV P L H D ++FP G P + SG D DG+ +VCW
Sbjct: 849 VLVARLPAHVPSDIQRRRAVWKPELRHFKDVIVFPTVGTTPLAHMLSGGDYDGDTTWVCW 908
Query: 651 DHD 653
D +
Sbjct: 909 DQN 911
>gi|391867215|gb|EIT76465.1| hypothetical protein Ao3042_07438 [Aspergillus oryzae 3.042]
Length = 1260
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 591 MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
++VA+ P P D++ RAV P L H D ++FP G P + SG D DG+ +VCW
Sbjct: 849 VLVARLPAHVPSDIQRRRAVWKPELRHFKDVIVFPTVGTTPLAHMLSGGDYDGDTTWVCW 908
Query: 651 DHD 653
D +
Sbjct: 909 DQN 911
>gi|317151716|ref|XP_001824860.2| RNA-directed RNA polymerase [Aspergillus oryzae RIB40]
Length = 1291
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 591 MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
++VA+ P P D++ RAV P L H D ++FP G P + SG D DG+ +VCW
Sbjct: 880 VLVARLPAHVPSDIQRRRAVWKPELRHFKDVIVFPTVGTTPLAHMLSGGDYDGDTTWVCW 939
Query: 651 DHD 653
D +
Sbjct: 940 DQN 942
>gi|296417840|ref|XP_002838558.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634502|emb|CAZ82749.1| unnamed protein product [Tuber melanosporum]
Length = 1700
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 27/134 (20%)
Query: 559 ELRTRARIFIQNGQAMMGCLDEKGTLEYGQ----------------------GLMVVAKK 596
EL+ + I I + ++ D GTL G+ G ++VA+
Sbjct: 1234 ELKEKLHIRIPHSTTLLCVADPTGTLREGEVSLRFSNGFLDPKTLRRTQVITGDILVARN 1293
Query: 597 PCLHPGDMRVLRAVDVP-----ALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWD 651
P P D++ ++AVD+ AL + D ++F +G++ + SG D DG+ +VCW+
Sbjct: 1294 PAHIPSDIQKVKAVDIQPYHSLALRELQDVIVFSTQGDQSLASLLSGGDYDGDKPWVCWE 1353
Query: 652 HDRIPPLQFQPTAY 665
+ P PT Y
Sbjct: 1354 ERLVKPFTNSPTTY 1367
>gi|171685170|ref|XP_001907526.1| hypothetical protein [Podospora anserina S mat+]
gi|170942546|emb|CAP68197.1| unnamed protein product [Podospora anserina S mat+]
Length = 1478
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 38/61 (62%)
Query: 591 MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
++VA+ P D++ +RAV P LH + D ++F +KG P + SG D DG++ +VCW
Sbjct: 1048 VLVARSPAHFASDVQRVRAVFKPQLHALKDVIVFSSKGNVPLAEKLSGGDYDGDMAWVCW 1107
Query: 651 D 651
D
Sbjct: 1108 D 1108
>gi|449436040|ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
sativus]
Length = 1056
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 107/252 (42%), Gaps = 46/252 (18%)
Query: 564 ARIFIQNGQAMMGCLDEKGTLEYGQ-----------GLMVVAKKPCLHPGDMRVLRA--V 610
R+ + +MG +D TLE G+ G ++V + P LH GD+ VL A V
Sbjct: 670 GRLHVPECYYLMGTVDPTFTLESGEVCVILYNGQINGKVLVYRNPGLHFGDIHVLTAKYV 729
Query: 611 D--VPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPT-AYTP 667
+ VP + + + F +KG R +E +G D DG++Y+V + + F+P + P
Sbjct: 730 EKLVPVVGNAKYAIFFSSKGPRSVADEIAGGDFDGDMYWVSRNSQLLE--YFRPCEPWRP 787
Query: 668 APEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEP----------------- 710
+P VT + +E+ AD + N+ + + +Y++
Sbjct: 788 SPS---TEVVTNKKPKEFSADELENELFKLFLSTRFQPSYAKSVAADNWLALMDQFLMLG 844
Query: 711 -DKAMSNRC--PDLVKLSSIVGDF----SKTGVAATIPSRLRVKIYPDFMEKQDKTWYES 763
++ C +++L +I D K G +P L+ P FME+ K Y S
Sbjct: 845 EERKEERNCIRAKILQLINIYYDALDAPKKGGKKIEVPKHLKAGTLPHFMER-GKNSYVS 903
Query: 764 QHIVGNLYREVN 775
I+G ++ N
Sbjct: 904 TSILGQIFDTAN 915
>gi|302883308|ref|XP_003040555.1| hypothetical protein NECHADRAFT_106579 [Nectria haematococca mpVI
77-13-4]
gi|256721441|gb|EEU34842.1| hypothetical protein NECHADRAFT_106579 [Nectria haematococca mpVI
77-13-4]
Length = 936
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 591 MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
++V + P P D++ ++AV P L H+ D ++FP G++P + SG + DG ++CW
Sbjct: 514 VLVGRCPAHLPSDIQKVKAVFRPELRHLKDIIIFPCTGDKPLAQKLSGGNYDGNRAWICW 573
Query: 651 DHDRIPPLQFQPTAYTPAP 669
D D + F+ P P
Sbjct: 574 DPDMVN--NFEGVDIPPKP 590
>gi|238505018|ref|XP_002383738.1| RNA-directed RNA polymerase, putative [Aspergillus flavus NRRL3357]
gi|220689852|gb|EED46202.1| RNA-directed RNA polymerase, putative [Aspergillus flavus NRRL3357]
Length = 1131
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 591 MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
++VA+ P P D++ RAV P L H D ++FP G P + SG D DG+ +VCW
Sbjct: 720 VLVARLPAHVPSDIQRRRAVWKPELRHFKDVIVFPTVGTTPLAHMLSGGDYDGDTTWVCW 779
Query: 651 DHD 653
D +
Sbjct: 780 DQN 782
>gi|347839298|emb|CCD53870.1| RNA Polymerase RNA dependante [Botryotinia fuckeliana]
Length = 1007
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 22/151 (14%)
Query: 523 AENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKG 582
+N + L LL+ G+ P ++ + + EL+ R I + + D G
Sbjct: 833 TKNEDKLNLLLDAGFDPRRLQYVMDLVKKSFDMKCAELKERLNITVAKSTKVYMVPDFWG 892
Query: 583 TLEYGQ-------------GL---------MVVAKKPCLHPGDMRVLRAVDVPALHHMVD 620
LE + GL ++VA+ P +P D++ + AV+ L H+ D
Sbjct: 893 VLEPNEVHLDFSSFVDNETGLSDIQLEDMDVLVARNPAHYPSDIQRVTAVNKHELRHLKD 952
Query: 621 CVLFPAKGERPHTNECSGSDQDGEIYFVCWD 651
++F KG ++ SG D DG+I +VCWD
Sbjct: 953 VIVFSTKGYPALADKLSGGDYDGDIAWVCWD 983
>gi|302653254|ref|XP_003018456.1| RNA-directed RNA polymerase, putative [Trichophyton verrucosum HKI
0517]
gi|291182103|gb|EFE37811.1| RNA-directed RNA polymerase, putative [Trichophyton verrucosum HKI
0517]
Length = 1082
Score = 56.2 bits (134), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 90/224 (40%), Gaps = 27/224 (12%)
Query: 510 SSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQ 569
SS++ E +T L LL+ G+ P F+ + + ++ +I I
Sbjct: 574 SSQILALNESTFPTNHTAQLNGLLDAGFSPSNLAFVRRLFKENSLGGFVQKLEALKIKIP 633
Query: 570 NGQAMMGCLDEKGTLEYGQ-----------------GL-MVVAKKPCLHPGDMRVLRAVD 611
+ + D G LE GQ G+ ++VA+ P P D++ RAV
Sbjct: 634 HSTYVYCIPDPYGVLEEGQIHLDLGDSWEDGTTDLDGIDVLVARAPAHLPSDIQKCRAVF 693
Query: 612 VPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPL-------QFQPTA 664
PAL ++ +F KG+ P + SG D DG+ +VCWD + + P +P
Sbjct: 694 HPALRYLKHVAIF-TKGDVPLASLLSGGDYDGDEVWVCWDQEIVKPFVNYPMPEIPEPEE 752
Query: 665 YTPAPEKILARDVTIEDVEEY-FADYIVNDSLGIICNAHVVYAY 707
Y D+ + EY F + + LG+ N H Y Y
Sbjct: 753 YGLVKVSRRVGDMPFDRFMEYAFTFNMSQNPLGLCTNEHERYCY 796
>gi|242048812|ref|XP_002462152.1| hypothetical protein SORBIDRAFT_02g020722 [Sorghum bicolor]
gi|241925529|gb|EER98673.1| hypothetical protein SORBIDRAFT_02g020722 [Sorghum bicolor]
Length = 88
Score = 55.8 bits (133), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 655 IPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADY-IVNDSLGIICNAHVVYAYSEPDKA 713
IP P YT I+ VT+E+++++F Y + ND+LG+I H+++A P KA
Sbjct: 8 IPEKVDAPMDYTATRPCIMDHAVTLEEIQKHFVSYYMTNDTLGVISIVHLIHADHNPLKA 67
Query: 714 MSNRCPDLVKLSSIVGDFSKT 734
S C L L S+ DF+KT
Sbjct: 68 HSPECLQLAALHSMAVDFAKT 88
>gi|443894414|dbj|GAC71762.1| RNA-directed RNA polymerase QDE-1 [Pseudozyma antarctica T-34]
Length = 1339
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 76/186 (40%), Gaps = 29/186 (15%)
Query: 531 ELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ-- 588
++L G+ P + +L+ + + ++ R + I M D GTLE G+
Sbjct: 767 DMLKIGFHPRSCSYLAGFLVEIADTAMKKVTQRFAVSIARSAEAMVIPDPTGTLEEGEIQ 826
Query: 589 ----------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPA 626
G ++V + PCL P D+R +RAV L D V+F
Sbjct: 827 FRFSGDSICDPDSRLALHHVPEGDVLVTRHPCLLPTDIRKVRAVVRSELSRFQDVVVFST 886
Query: 627 KGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAP---EKILARDVTIEDVE 683
KG P + SG D DG++ V W+ + P + + P +K+ R + E V
Sbjct: 887 KGHTPLASLLSGGDYDGDLIRVFWEPRLVDPFKNADIKFAECPFEMDKVFNR--SEETVS 944
Query: 684 EYFADY 689
E+ A +
Sbjct: 945 EFVAQH 950
>gi|350635543|gb|EHA23904.1| hypothetical protein ASPNIDRAFT_40039 [Aspergillus niger ATCC 1015]
Length = 1307
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 12/156 (7%)
Query: 591 MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
++V + P P D++ +AV L H D ++FP+ G P + SG D DG+ ++CW
Sbjct: 893 VLVGRLPAHLPSDIQRRKAVWKSELRHFKDVIVFPSVGSIPLAHMLSGGDYDGDTPWICW 952
Query: 651 DHD--------RIPPLQFQPTAYTPAPEKILARDVTIED--VEEYFADYIVNDSLGIICN 700
D + ++P ++F Y + +D+ D ++ F + +LG
Sbjct: 953 DQNIVQNFNNSKLPDIEFPAEHYGLTKYAVGMKDIQSMDEFLQSSFTFNLTLSNLGRCTV 1012
Query: 701 AHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGV 736
H AY D S++ +L L S + D K GV
Sbjct: 1013 EHEKIAYD--DSIDSDKAKELACLLSHLVDGRKAGV 1046
>gi|156058730|ref|XP_001595288.1| hypothetical protein SS1G_03377 [Sclerotinia sclerotiorum 1980]
gi|154701164|gb|EDO00903.1| hypothetical protein SS1G_03377 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1390
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 22/151 (14%)
Query: 523 AENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKG 582
A++ + L LL+ G+ P ++ + + EL+ R I + + D G
Sbjct: 833 AKHEDRLSTLLDAGFDPRKLHYIMELAKKAFDMKCEELKERLNITVAKSTKVYMVPDFWG 892
Query: 583 TLEYGQ-------------GL---------MVVAKKPCLHPGDMRVLRAVDVPALHHMVD 620
LE + GL ++VA+ P +P D++ + AV L H+ D
Sbjct: 893 VLEPNEVHLNFSSFVDNESGLSDTQLENVDVLVARNPAHYPSDIQRVTAVSKHELRHLKD 952
Query: 621 CVLFPAKGERPHTNECSGSDQDGEIYFVCWD 651
++F KG ++ SG D DG+I +VCWD
Sbjct: 953 VIVFSTKGYPSLADKLSGGDYDGDIAWVCWD 983
>gi|224146916|ref|XP_002336366.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222834816|gb|EEE73265.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 320
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 525 NTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL 584
+ N++ ++ CG P EP+L L+ +I + +MG D G L
Sbjct: 32 DDNIVATMIGCGI-PLEEPYLQCRLSILMKEEKKSLKG-GKIPVPESYYLMGTADPTGLL 89
Query: 585 EY---------GQ--GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVD----CVLFPAKGE 629
E GQ G +++ + P LH GD+ +L+A V L V + FP KG
Sbjct: 90 ESDEVCIILDCGQISGEVLIYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIFFPCKGP 149
Query: 630 RPHTNECSGSDQDGEIYFV 648
R +E SG D DG+++FV
Sbjct: 150 RSLADEMSGGDFDGDMFFV 168
>gi|393236487|gb|EJD44035.1| hypothetical protein AURDEDRAFT_114369 [Auricularia delicata
TFB-10046 SS5]
Length = 1203
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 67/164 (40%), Gaps = 22/164 (13%)
Query: 589 GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFV 648
G ++V + PC+ P D+R + AVD AL D + F KG R N SG D DG+ +
Sbjct: 780 GDVLVGRHPCVLPTDVRKVVAVDSLALRPYRDIIFFSTKGTRSLANILSGGDYDGDTAVL 839
Query: 649 CWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVN---------------- 692
W + + P Q P P + + + E + D + N
Sbjct: 840 IWQTEVVQPFQNAPLHLADPPANV---ETSFEAEMQSVKDLLTNGHFNHLRLSFLLSGLK 896
Query: 693 -DSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTG 735
+ +G+ N H++ Y + + R L +S + D KTG
Sbjct: 897 KNPVGLYSNFHLLACYVQGYRNEETR--RLAHISGQLLDAPKTG 938
>gi|393232270|gb|EJD39854.1| hypothetical protein AURDEDRAFT_171128 [Auricularia delicata
TFB-10046 SS5]
Length = 1291
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 566 IFIQNGQAMMGCLDEKG-TLEYGQGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLF 624
IF+ + + + LD G T+ + G ++V + P P D++ ++AV P L H D ++F
Sbjct: 862 IFLSSSKVL---LDNSGRTMNHLSGDVLVYRNPVRLPCDIQKVKAVYKPELDHYRDVIVF 918
Query: 625 PAKGERPHTNECSGSDQDGEIYFVCWDHD 653
AKG R ++ +G D DG+ V WD D
Sbjct: 919 SAKGTRSLASKLAGGDYDGDTAVVIWDQD 947
>gi|340515396|gb|EGR45650.1| predicted protein [Trichoderma reesei QM6a]
Length = 989
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%)
Query: 591 MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
++VA+ P P D++ ++ V P L + D ++F KG P ++ SG D DG++ +VCW
Sbjct: 545 ILVARVPAHLPSDIQRVKVVSRPELRKLKDVIIFSTKGGVPLAHKLSGGDYDGDMAWVCW 604
Query: 651 DHD 653
D +
Sbjct: 605 DQN 607
>gi|408399167|gb|EKJ78292.1| hypothetical protein FPSE_01753 [Fusarium pseudograminearum CS3096]
Length = 1388
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 21/150 (14%)
Query: 525 NTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL 584
+ +++ +L+ G+ FL + +L+ + I I +D GTL
Sbjct: 870 DDDIVSFMLDAGFDATKCRFLRDLVWNNQKRQAEQLKAKMNIKIPRSAYAFMVVDFTGTL 929
Query: 585 EYGQGLM---------------------VVAKKPCLHPGDMRVLRAVDVPALHHMVDCVL 623
E G+ + +VA+ P D++ +RAV P L + D ++
Sbjct: 930 EEGEVQLAFSSKFQADGESDTLLDDIDILVARAPAHFVSDVQKVRAVFRPNLKRLKDVIV 989
Query: 624 FPAKGERPHTNECSGSDQDGEIYFVCWDHD 653
F +KG+ P + SG D DG+ +VCWD D
Sbjct: 990 FSSKGKSPLADMLSGGDYDGDQAWVCWDPD 1019
>gi|46124253|ref|XP_386680.1| hypothetical protein FG06504.1 [Gibberella zeae PH-1]
Length = 1372
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 21/150 (14%)
Query: 525 NTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL 584
+ +++ +L+ G+ FL + +L+ + I I +D GTL
Sbjct: 854 DDDIVSFMLDAGFDATKCRFLRDLVWNNQKRQAEQLKAKMNIKIPRSAYAFMVVDFTGTL 913
Query: 585 EYGQGLM---------------------VVAKKPCLHPGDMRVLRAVDVPALHHMVDCVL 623
E G+ + +VA+ P D++ +RAV P L + D ++
Sbjct: 914 EEGEVQLAFSSKFQADGESDTLLDDIDILVARAPAHFVSDVQKVRAVFRPNLKRLKDVIV 973
Query: 624 FPAKGERPHTNECSGSDQDGEIYFVCWDHD 653
F +KG+ P + SG D DG+ +VCWD D
Sbjct: 974 FSSKGKSPLADMLSGGDYDGDQAWVCWDPD 1003
>gi|336378305|gb|EGO19463.1| hypothetical protein SERLADRAFT_442939 [Serpula lacrymans var.
lacrymans S7.9]
Length = 733
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 75/330 (22%), Positives = 130/330 (39%), Gaps = 61/330 (18%)
Query: 454 VTLRNNMFKYKSESTSLDILANSKYQREGV-ARLRLDNVFERKQREVVARLDAILTDSSK 512
+ L+NN + + + A+ +Q+ A RL ++F A L D
Sbjct: 236 IALQNNAISEAQTAHNSFLDASKMFQKNNFGASFRLPSLFHNL---------ATLLDIHP 286
Query: 513 VQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQ 572
+L L+S++ +++ +LL C L EL+ RA I +
Sbjct: 287 GDSSLGLVSTSWKHDLVAKLLQC----------------VSTYALRELKYRAHIAVPGSY 330
Query: 573 AMMGCLDEK-GTLEYGQGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERP 631
++G DE+ G + +G +++ + +HPGD++V+ AV P L H+ + V+F KG R
Sbjct: 331 TLLG--DERTGLYKSIEGRVLITRSAQIHPGDVQVVTAVRHPELSHLTNVVVFSCKGNRS 388
Query: 632 HTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIV 691
+ G G+ + + D P +P Y P K TI
Sbjct: 389 LASCLGGGGLAGDDFNLLLDESLFPKKVAKPGTYDSLPIK-----KTINP---------- 433
Query: 692 NDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPS--RLRVKIY 749
C+A + +P + C L + +S DF KTG + +L
Sbjct: 434 -------CSASDIADVKDPG---CSECLQLAQYASHAVDFPKTGSPVRMKDLPQLSGLSK 483
Query: 750 PDFMEKQDKT-----WYESQHIVGNLYREV 774
PDF+ + +Y S ++G L+R V
Sbjct: 484 PDFLAPEGANIRSDQYYFSPKLLGVLHRRV 513
>gi|322695803|gb|EFY87605.1| Rnai Polymerase [Metarhizium acridum CQMa 102]
Length = 685
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 66/147 (44%), Gaps = 21/147 (14%)
Query: 528 VLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYG 587
V+ LL+ G+ P + +L + + L+ + +I + ++ +D TLE
Sbjct: 168 VMAVLLDSGFHPKSCKYLQDLFRDAARDRAAFLKAKMKICVPCSAYLLMVVDFSSTLEED 227
Query: 588 Q--------------------GL-MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPA 626
+ G+ ++VA+ P P D++ ++ V P L H+ D ++F
Sbjct: 228 EVHVSFSTKFQVDGFCDTLLEGMDVLVARAPSHLPSDIQRVKVVSRPQLRHLKDVIVFST 287
Query: 627 KGERPHTNECSGSDQDGEIYFVCWDHD 653
KG ++ SG D DG+ +VCWD +
Sbjct: 288 KGRSSLADKLSGGDYDGDRAWVCWDQE 314
>gi|389627942|ref|XP_003711624.1| RNA-dependent RNA polymerase [Magnaporthe oryzae 70-15]
gi|351643956|gb|EHA51817.1| RNA-dependent RNA polymerase [Magnaporthe oryzae 70-15]
Length = 1261
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 70/168 (41%), Gaps = 25/168 (14%)
Query: 525 NTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARI----------------FI 568
+ +V+ E++ G+ P + +L + LR + I +
Sbjct: 745 DEDVMAEMVRAGFNPRGQKYLQDIAWNIQKQKCETLREKLNIKVGMSTYALMVVDFWGVV 804
Query: 569 QNGQAMMGCLDEKGTLEYGQGLMV------VAKKPCLHPGDMRVLRAVDVPALHHMVDCV 622
G+ + C EK T + G ++ VA+ P + D++ ++AV P L + D +
Sbjct: 805 PEGEVHL-CFSEKFTCDGFSGTLLNDQEVLVARSPAHYVSDIQKVKAVFRPELKDLKDVI 863
Query: 623 LFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPE 670
+F G + SG D DG+I +VCWD + FQ A +P+
Sbjct: 864 VFSRNGNVALADRLSGGDYDGDIAWVCWDSKIVD--NFQNAAVPDSPD 909
>gi|218187686|gb|EEC70113.1| hypothetical protein OsI_00772 [Oryza sativa Indica Group]
Length = 1155
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 98/229 (42%), Gaps = 42/229 (18%)
Query: 563 RARIFIQNGQAMMGCLDEKGTL---------EYGQ--GLMVVAKKPCLHPGDMRVLRAVD 611
+ +I I +M D GTL E GQ G ++V K P LH GD+ VL+A
Sbjct: 784 QGKIPIDECYYLMDTTDPTGTLRPNEVCVILENGQFSGDVLVYKHPGLHFGDIHVLKATY 843
Query: 612 VPALH-----HMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPL--QFQPT- 663
+ L + +LFP G R +E + SD DG+IY+V + P L F+P+
Sbjct: 844 IRDLEKEYVGYAKYAILFPISGPRSLADEMANSDFDGDIYWV----SKNPKLLEHFKPSE 899
Query: 664 AYTPAPEKILARDVTIEDVEE------YFADYIVND-----SLGIICNAHVVY------- 705
+ A + + +D E F +++ +LG ++ + Y
Sbjct: 900 PWVQAIKPKKTKQKKPQDCNESKLERLLFHEFLKTRFTPSFALGTAADSWLAYMDRLLTD 959
Query: 706 AYSEPDKAM-SNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFM 753
+ E +K + + LV L + D KTG IPS L VK YP FM
Sbjct: 960 SLDEIEKKLIEEKMIKLVDLYYLALDAPKTGNKVNIPSDLMVKQYPHFM 1008
>gi|402074256|gb|EJT69785.1| RNA-dependent RNA polymerase [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1442
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 591 MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
++VA+ P + D++ ++AV PAL + D ++FP KG ++ SG D DG+ +VCW
Sbjct: 983 LLVARSPAHYISDIQKVKAVFKPALKDLKDVIVFPRKGRVALADKLSGGDYDGDKAWVCW 1042
Query: 651 DH 652
D
Sbjct: 1043 DQ 1044
>gi|440464051|gb|ELQ33552.1| RNA-dependent RNA polymerase [Magnaporthe oryzae Y34]
gi|440477644|gb|ELQ58660.1| RNA-dependent RNA polymerase [Magnaporthe oryzae P131]
Length = 1738
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 70/168 (41%), Gaps = 25/168 (14%)
Query: 525 NTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARI----------------FI 568
+ +V+ E++ G+ P + +L + LR + I +
Sbjct: 750 DEDVMAEMVRAGFNPRGQKYLQDIAWNIQKQKCETLREKLNIKVGMSTYALMVVDFWGVV 809
Query: 569 QNGQAMMGCLDEKGTLEYGQGLMV------VAKKPCLHPGDMRVLRAVDVPALHHMVDCV 622
G+ + C EK T + G ++ VA+ P + D++ ++AV P L + D +
Sbjct: 810 PEGEVHL-CFSEKFTCDGFSGTLLNDQEVLVARSPAHYVSDIQKVKAVFRPELKDLKDVI 868
Query: 623 LFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPE 670
+F G + SG D DG+I +VCWD + FQ A +P+
Sbjct: 869 VFSRNGNVALADRLSGGDYDGDIAWVCWDSKIVD--NFQNAAVPDSPD 914
>gi|402224034|gb|EJU04097.1| hypothetical protein DACRYDRAFT_14289 [Dacryopinax sp. DJM-731 SS1]
Length = 1239
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 21/151 (13%)
Query: 539 PDAEPFL--SMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQGLMVVAKK 596
P AE F S +P + +R R+ + G A + G +++ +
Sbjct: 866 PSAEGFAIPSPIPSALKPGEIFLRMSRERVDSRTGMAT----------DVVVGDVLIVRH 915
Query: 597 PCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHT--NECSGSDQDGEIYFVCWDHDR 654
PC P D+++++AVD P L H D ++ +P + ++ +G D DG+ + WD D
Sbjct: 916 PCKLPSDIQLVKAVDCPELRHWKDVIITSVDRSQPRSLLSKLAGGDYDGDTVVIYWDKDL 975
Query: 655 IPPLQFQPTAYTPAPEKILARDVTIEDVEEY 685
I + PA ++ L ++D EY
Sbjct: 976 I-------AGFKPASDECLDPPDRVKDCFEY 999
>gi|224093866|ref|XP_002310026.1| hypothetical protein POPTRDRAFT_562705 [Populus trichocarpa]
gi|222852929|gb|EEE90476.1| hypothetical protein POPTRDRAFT_562705 [Populus trichocarpa]
Length = 406
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 17/137 (12%)
Query: 527 NVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEY 586
N++ ++ CG P EP+L + + +I + +MG D G LE
Sbjct: 258 NIVATMIGCGI-PLEEPYLQHH-LSILKKEEKKSLKGGKIPVPESYYLMGTADPTGLLES 315
Query: 587 ---------GQ--GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVD----CVLFPAKGERP 631
GQ G ++V + P LH GD+ +L+A V L V + FP KG R
Sbjct: 316 DEVCIILDCGQVSGEVLVYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIFFPCKGPRS 375
Query: 632 HTNECSGSDQDGEIYFV 648
+E SG D DG+++FV
Sbjct: 376 LADEMSGGDFDGDMFFV 392
>gi|302673317|ref|XP_003026345.1| expressed protein [Schizophyllum commune H4-8]
gi|300100027|gb|EFI91442.1| expressed protein [Schizophyllum commune H4-8]
Length = 984
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 588 QGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYF 647
+G ++V + P P D+R ++AV+ PALH + +L P GER + SG D DG+I F
Sbjct: 588 EGEVIVGRYPIRLPSDLRKVKAVNRPALHQYTNVILVPTVGERSLVSLLSGGDCDGDILF 647
Query: 648 V 648
+
Sbjct: 648 M 648
>gi|295666726|ref|XP_002793913.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226277566|gb|EEH33132.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1176
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 580 EKGTLEYGQGL----MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNE 635
E G++ G L ++VA+ P P D++ RAV L H D ++FP G+ P +
Sbjct: 776 EDGSVVVGTELHNINVLVARLPAHLPTDIQKRRAVYKNELRHFKDVIIFPTTGDVPLASL 835
Query: 636 CSGSDQDGEIYFVCWD 651
SG D DG+ +VCWD
Sbjct: 836 LSGGDYDGDQCWVCWD 851
>gi|299747708|ref|XP_001837206.2| RNA-directed RNA polymerase [Coprinopsis cinerea okayama7#130]
gi|298407644|gb|EAU84823.2| RNA-directed RNA polymerase [Coprinopsis cinerea okayama7#130]
Length = 1221
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 74/183 (40%), Gaps = 46/183 (25%)
Query: 521 SSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQN------GQAM 574
SS E T + E L+ G+ MPQ+ H +L+ R FI+N A+
Sbjct: 667 SSLEET--VLEFLDSGF----------MPQSCHVQRE-KLKHIIRRFIKNISKTYRMTAL 713
Query: 575 MGC-----LDEKGTLEYGQ----------------------GLMVVAKKPCLHPGDMRVL 607
M C D +G LE G+ G ++V + P P D++
Sbjct: 714 MSCSAWIIPDTRGVLEEGEIYFKSSSRNLLRPNGTLTDELIGDVLVTRNPSKLPTDVQKW 773
Query: 608 RAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTP 667
RAV P L +VD V+ KG R + +G D DG+ V WD + P + ++
Sbjct: 774 RAVHRPELRDLVDVVVLSTKGARRAADWLAGGDYDGDKVTVIWDPKIVDPFKTADPSHGD 833
Query: 668 APE 670
P+
Sbjct: 834 PPD 836
>gi|406863804|gb|EKD16851.1| hypothetical protein MBM_05320 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1323
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 78/185 (42%), Gaps = 29/185 (15%)
Query: 527 NVLKE----LLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKG 582
NVL+E LL+ G+ P F+ + + + EL+ R I + D G
Sbjct: 793 NVLEERLNILLDAGFHPKGIRFMEDLAKKVFTKRIDELKKRLNITVGRSTYAYMVPDFWG 852
Query: 583 TLEYGQ-------------GL---------MVVAKKPCLHPGDMRVLRAVDVPALHHMVD 620
LE G+ GL ++VA+ P D++ ++AV L + D
Sbjct: 853 VLEEGEVYIDFSSFVDNVSGLSGASPSGSQILVARSPAHFVSDIQKVKAVIREELVGLKD 912
Query: 621 CVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIE 680
++F KG ++ SG D DG++ +VCW+ + + TA P ++AR + +
Sbjct: 913 VIIFSVKGYPALADKLSGGDYDGDVAWVCWEPAIVDNFE---TAEVPKAIDLVARGLIRQ 969
Query: 681 DVEEY 685
D Y
Sbjct: 970 DKTTY 974
>gi|258570921|ref|XP_002544264.1| predicted protein [Uncinocarpus reesii 1704]
gi|237904534|gb|EEP78935.1| predicted protein [Uncinocarpus reesii 1704]
Length = 1348
Score = 52.8 bits (125), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 65/159 (40%), Gaps = 18/159 (11%)
Query: 591 MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
+++ + P P D++ RAV L H D ++FP G+ P SG D DG+ +VCW
Sbjct: 934 VLLGRNPAHLPNDIQKRRAVFKKELRHFKDVIVFPTVGKVPLAGMLSGGDYDGDQVWVCW 993
Query: 651 DHDRIPPLQFQPTAYTPAPEKILARDVTIE-------DVEEYFADYIVNDS----LGIIC 699
D + + P PE V+ D E+ V ++ LG
Sbjct: 994 DPELVNTFINTPFEPEKVPEPHEFGLVSCSEKLKEPFDFNEFLTKVFVFNAAPSLLGHCT 1053
Query: 700 NAHVVYAYSEPDKAMSNRCPDLVKLSSIVG---DFSKTG 735
N H Y E A P ++LS ++G D KTG
Sbjct: 1054 NEHEKLCYYENGIA----SPGAIQLSHLLGHLADVRKTG 1088
>gi|378728492|gb|EHY54951.1| RNA-directed RNA polymerase [Exophiala dermatitidis NIH/UT8656]
Length = 1308
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 82/223 (36%), Gaps = 37/223 (16%)
Query: 470 LDILANSKYQREGVARLRLDNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNV- 528
L+I + + GV R L + E + L + D ++ ++ A T V
Sbjct: 679 LNIQLITILEDRGVPRAALRKLLEDDTKSYFESLKEAMEDPKALRAWMQEHGLASRTEVT 738
Query: 529 -------------LKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMM 575
+K LL G+ P L + F + R I + +
Sbjct: 739 RFLGSFPLDRRDQMKYLLESGFDPTECARLKDLAAGFLQEYMTNYVERLWINVPCSTVVF 798
Query: 576 GCLDEKGTLEYGQ----------------------GL-MVVAKKPCLHPGDMRVLRAVDV 612
D G LE GQ GL ++VA+ P DM++ +AV
Sbjct: 799 CAPDPLGVLEEGQVFINFTSPVYDPVKGYHDTVLEGLDVLVARNPAYLASDMQLCQAVYK 858
Query: 613 PALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRI 655
LH + +LFP KG++P + SG D DG+ V WD D +
Sbjct: 859 HELHLYKNVILFPVKGKQPLASLLSGGDYDGDTVTVIWDPDIV 901
>gi|426200996|gb|EKV50919.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
Length = 1000
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 62/123 (50%), Gaps = 7/123 (5%)
Query: 552 FHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYG--QGLMVVAKKPCLHPGDMRVLRA 609
F A + L + I+ ++ +++ LD + L Y G +++ + P D++ ++A
Sbjct: 595 FVAPDPLGILDEGEIYFRSSESL---LDPRTQLTYDIVTGDVILGRYPVRLASDLQKVKA 651
Query: 610 VDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAP 669
V+ P L+ D ++ KG+R + SG D DG+ F+ + D + P + QP + P P
Sbjct: 652 VNKPELYRWPDVIIVSTKGKRSLASLLSGGDMDGDTLFMLREPDIVEPFRNQP--FVPPP 709
Query: 670 EKI 672
+ +
Sbjct: 710 DDL 712
>gi|391343490|ref|XP_003746042.1| PREDICTED: uncharacterized protein LOC100901929 [Metaseiulus
occidentalis]
Length = 1356
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 109/502 (21%), Positives = 188/502 (37%), Gaps = 87/502 (17%)
Query: 352 KKFETLAFSNSQERENTLWMFASRP--ELTAADIRERMGDFREIKNVTKYAARLGQSFAS 409
K + L S SQ + + W +A T + +RER+G N+ + A FA
Sbjct: 457 KTYYFLGNSKSQAEDFSFWAYAIEKGDTDTISSVRERLGI---TGNLARRIAVQDLVFAE 513
Query: 410 SREALHVDSN------------------IGKISAELAETVAKKCGYAIYTPSAFQIRYGG 451
+ A+ +D + IG+IS TV + C ++ SA ++ +GG
Sbjct: 514 ALGAVSIDPSWVSEESEDVPAASDFKHGIGRISEAALRTVVENCHWSRTLCSAIRVVHGG 573
Query: 452 YKVTL-------------RNNMFKYKSESTSLDI-----LANSKYQREGVARL--RLDNV 491
+ TL R + KSE ++L + + N+ + R ++ L + D +
Sbjct: 574 RRGTLVYDPSLEGSRIIYRKSQTVIKSEDSTLYLIERSEIKNAAFDRTFISTLSSKADGL 633
Query: 492 FERKQRE-VVARLDAILTDSSKVQEALELMSSAENTNVLKELLN-----CGYKPDAEPFL 545
E E + L +LT+ + + VL + GY +
Sbjct: 634 TEEFSVEDFLTPLYELLTEPLSLYSTGARVKRVAAEPVLDHIFREGEDLYGYDKRGD--- 690
Query: 546 SMMPQTFHASNLLELRTRARI--FIQNGQAMMGCLDEK----------------GTLEYG 587
+ Q L LR ++ + N +M +DE G L
Sbjct: 691 GLFRQAVRCKALKALRDLKKLKQHMTNAYEIMPVVDELELLEEGEVFIQVCSPGGDLRVL 750
Query: 588 QGLMVVAKKPCLHPGDMRVLRAVDVP----ALHHMVDCVLFPAK-GERPHTNECSGSDQD 642
G +V+A+K +H + R + AV+ P AL H+ +CV+ P+K G RP +
Sbjct: 751 SGDLVLARKDAMHLEEFRRVTAVNRPDVVGALGHLFNCVVLPSKGGSRPLEFLAREASYA 810
Query: 643 GE--IYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIE---DVEEYFADYIVNDSLGI 697
GE I + D P F+ P +A ++ D+E +F +Y+ S
Sbjct: 811 GESDIILIASHPDEEPAFLFKRN--DPPRSTSIAVGPAVDSGCDIETHFFNYLSYVSFND 868
Query: 698 ICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGV-AATIPSRLRVKIYPDFMEK- 755
A P A S C ++ + + G A +P +V +P F+EK
Sbjct: 869 FEEVFCALADYLPQHASSESCIRAGAQQRLLDKYRRGGREGAPLP---KVVKFPHFLEKI 925
Query: 756 QDKTWYESQHIVGNLYREVNGI 777
D Y S + ++Y++ I
Sbjct: 926 SDGKTYCSTRPLAHIYQKGRAI 947
>gi|345568648|gb|EGX51541.1| hypothetical protein AOL_s00054g240 [Arthrobotrys oligospora ATCC
24927]
Length = 1615
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 588 QGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGE---RPHTNECSGSDQDGE 644
+G ++V + P D++ + AVDVP L + D ++FPA E R + SG D DG+
Sbjct: 1158 RGGVLVGRNPAHFASDIQKVTAVDVPELRFLTDVIVFPADPESNDRSLADYLSGGDYDGD 1217
Query: 645 IYFVCWDH 652
+ CWD
Sbjct: 1218 RVWTCWDQ 1225
>gi|225683475|gb|EEH21759.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 1341
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 591 MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
++VA+ P P D++ RAV L H D ++FP G+ P + SG D DG+ +VCW
Sbjct: 926 VLVARLPAHLPTDIQKRRAVYKNELRHFKDVIVFPTTGDVPLASLLSGGDYDGDQCWVCW 985
Query: 651 D 651
D
Sbjct: 986 D 986
>gi|290988738|ref|XP_002677050.1| predicted protein [Naegleria gruberi]
gi|284090655|gb|EFC44306.1| predicted protein [Naegleria gruberi]
Length = 553
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 97/441 (21%), Positives = 167/441 (37%), Gaps = 107/441 (24%)
Query: 289 NRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIV 348
N+V R Y ID F+R+ F DE ST V+ T G
Sbjct: 111 NKVFRYYG--IDKFIRVDFEDER-------------DST-----------VMQTTLKGFC 144
Query: 349 IGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFA 408
+ + F+ + S+S E ++ + DI E K AR +F
Sbjct: 145 LYGQMFKPIGASSSLLSERGVYFTCEEDPMKMMDIFGIYASEIETK-----IARQCLNFT 199
Query: 409 SSREALHV-------DSN-----------IGKISAELAETVAKKC------GYAIYTPSA 444
S++E + V D N IG IS A+ V G ++ P A
Sbjct: 200 STKETIRVHKYIVIDDINSRDGKGIVSDGIGMISYSFAKAVCCSLRDQSIDGKYVHIPRA 259
Query: 445 FQIRYGGYKVTLRNNMFKYKSESTSLDILANSK--YQREGVARLRLDNVFERKQREVVAR 502
FQIR+ G+K L + D + N RE + + + +F + E+V
Sbjct: 260 FQIRFLGFKGML----------TVCPDKIMNGNQIILRESMKKFEGNPLFNK--LEIVEG 307
Query: 503 LDAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRT 562
L+ +D++ + + ++ S+ V E+ K + F A + +
Sbjct: 308 LNE--SDTANINRQIIILLSS--LQVKDEVFLNAQKKALARNKCRNDEEFRA-RIKNAKE 362
Query: 563 RARIFIQNGQAMMGCLDEKGTLEYGQGLMV--------------VAKKPCLHPGDMRVLR 608
+ + F+++ G LDE L+ Q +++ V + P LHP D+R+
Sbjct: 363 KTKFFMKDSVIAKGILDETKQLKDNQVIVITKNGRMVPGGKKVIVFRNPGLHPRDVRIFE 422
Query: 609 AVDVPALH-----HMVD----CVLFPAK-------GERPHTNECSGSD---QDGEIYFVC 649
V +P + H VD ++F A GE + + S S+ +DG+ +F
Sbjct: 423 TVSIPDYYQKWFGHEVDLKGSVIIFAADCQQHNIPGELGNFHLFSISNLQFKDGDRFFTS 482
Query: 650 WDHDRIPPLQFQPTAYTPAPE 670
W+ + IP Q+ + ++ A E
Sbjct: 483 WNTEIIPQAQYIQSWWSKANE 503
>gi|302413491|ref|XP_003004578.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
gi|261357154|gb|EEY19582.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
Length = 99
Score = 52.0 bits (123), Expect = 0.001, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 45/90 (50%)
Query: 615 LHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILA 674
L + +C++F G++ ++ SG D +G+ Y + WD P F Y+ L
Sbjct: 10 LRDLRNCIVFSQHGDQDLPSQLSGGDLNGDQYNIIWDRQACPKRFFASADYSRITPTELN 69
Query: 675 RDVTIEDVEEYFADYIVNDSLGIICNAHVV 704
R VT + +F D++ +D LG+I H++
Sbjct: 70 RQVTRDGKAGFFVDFMKSDMLGMITTEHLI 99
>gi|226287106|gb|EEH42619.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 1366
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 591 MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
++VA+ P P D++ RAV L H D ++FP G+ P + SG D DG+ +VCW
Sbjct: 951 VLVARLPAHLPTDIQKRRAVYKNELRHFKDVIVFPTTGDVPLASLLSGGDYDGDQCWVCW 1010
Query: 651 D 651
D
Sbjct: 1011 D 1011
>gi|302893516|ref|XP_003045639.1| hypothetical protein NECHADRAFT_39599 [Nectria haematococca mpVI
77-13-4]
gi|256726565|gb|EEU39926.1| hypothetical protein NECHADRAFT_39599 [Nectria haematococca mpVI
77-13-4]
Length = 1363
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 21/148 (14%)
Query: 525 NTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL 584
+ +V+ LL+ G++ L + + +L+ + I I +D GTL
Sbjct: 848 DEDVISYLLDAGFEATKCRHLRDLVWSMQKRQADQLKAKMNIKIPRSTYAYMVVDFTGTL 907
Query: 585 EYGQ--------------------GL-MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVL 623
E G+ G+ ++VA+ P D++ ++AV P L + D ++
Sbjct: 908 EEGEVQLAFSSKFQADGESDTLLDGIDILVARAPAHFVSDIQKVKAVFRPNLKRLKDVIV 967
Query: 624 FPAKGERPHTNECSGSDQDGEIYFVCWD 651
F +KG+ P + SG D DG+ +VCWD
Sbjct: 968 FSSKGKSPLADLLSGGDYDGDKAWVCWD 995
>gi|119183445|ref|XP_001242762.1| hypothetical protein CIMG_06658 [Coccidioides immitis RS]
gi|392865671|gb|EAS31478.2| hypothetical protein CIMG_06658 [Coccidioides immitis RS]
Length = 1372
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 579 DEKGTLEYGQGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSG 638
D +G + ++V + P P D++ RAV L H D ++FP G P + SG
Sbjct: 939 DSEGYTDLDGMDVLVGRNPAHLPSDIQKRRAVFKKELRHFKDVIVFPTAGALPLASMLSG 998
Query: 639 SDQDGEIYFVCWDHDRIPPLQFQPTAYTPA--PEK 671
D DG+ + CWD + QF T + P PE+
Sbjct: 999 GDYDGDQVWTCWDPQLVN--QFTNTPFDPKKIPER 1031
>gi|403411358|emb|CCL98058.1| predicted protein [Fibroporia radiculosa]
Length = 1270
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 61/159 (38%), Gaps = 22/159 (13%)
Query: 531 ELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ-- 588
ELL G+ P P L + + E RI ++N D G LE GQ
Sbjct: 782 ELLQAGFHPLELPILYEKLRQIVEKRIEEFIKEYRIVLENSAEAFIMPDPYGVLEEGQIQ 841
Query: 589 --------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKG 628
G +++ + P P D+R + AV P L V+ ++ P KG
Sbjct: 842 FIATQNLKDPLEDPMPMAITGEVLLYRNPARVPSDVRKVIAVVHPKLVEYVNVIVLPTKG 901
Query: 629 ERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTP 667
+R N +G D DG++ ++ + P + P P
Sbjct: 902 KRSLANILAGGDVDGDVAVCIYEPSLVKPFRNGPINDPP 940
>gi|170091852|ref|XP_001877148.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648641|gb|EDR12884.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1193
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/263 (20%), Positives = 105/263 (39%), Gaps = 54/263 (20%)
Query: 545 LSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQGLMVVAKKPCLHPGDM 604
+ M F ++L + IF ++ + + D T + G +++ + PC P D+
Sbjct: 712 VPMSASAFLVPDILGVLKPGEIFYKSSRRNLRQTDGTET-DIMLGDVLITRHPCKLPTDI 770
Query: 605 RVLRA-----------------VDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYF 647
+ +RA VD P LHH+ D ++ P G+R + SG D DG+
Sbjct: 771 QKVRASSQFMFVKHLYSPQWKAVDRPELHHLTDVIVLPTTGDRRAADLLSGGDYDGDKGL 830
Query: 648 VCWDHDRIPPLQFQPTAYTPAPEK--------------------ILARDVTIEDVEEYFA 687
+ + + P P ++ P +L+ D I + ++Y
Sbjct: 831 ITNQPELVIPFINAPLHFSEPPSNMQKYFVRENEAVPAFLERTSVLSDDAKIHERQQYLL 890
Query: 688 DYIVNDS-LGIICNAHVVYAYSEPDKAMSNRCPDLVKLS---SIVGDFSKTGVAATIPSR 743
I + S +G N H Y+ + P+ ++L+ + D +KTG+ +P
Sbjct: 891 GAIRDTSVVGKYSNFHEAAIYT-----LGYTHPETIRLAYMFCMTLDGAKTGM-TVLPQV 944
Query: 744 LR--VKIYPDFMEKQDKTWYESQ 764
L+ + Y +K+ TW E++
Sbjct: 945 LKDDTRKY----QKRPPTWKETE 963
>gi|255956165|ref|XP_002568835.1| Pc21g18410 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590546|emb|CAP96738.1| Pc21g18410 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1430
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 69/159 (43%), Gaps = 18/159 (11%)
Query: 591 MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
++V + P P D++ RAV L H + ++FP GE P SG D DG+ ++CW
Sbjct: 1033 VLVGRLPAHLPSDIQRRRAVWKSELRHFKNVIVFPTTGEFPLAGMLSGGDYDGDTPWICW 1092
Query: 651 D--------HDRIPPLQFQPTAYTPAPEKI-LARDVTIEDVEEYFADYIVNDS-LGIICN 700
D + +P ++ Y + +A + ED E D+ +N S LG
Sbjct: 1093 DPMIVERFQNSPMPTDEYSAEHYGLTKHSVPMASLESTEDFLESVFDFNLNVSNLGRCTV 1152
Query: 701 AHVVYAYSEPDKAMSNRCPDLVKLSSIVG---DFSKTGV 736
H AY E S P +L+ ++G D K GV
Sbjct: 1153 EHEKLAYDE-----SVDSPKAKELACLLGHLVDGRKGGV 1186
>gi|170084677|ref|XP_001873562.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164651114|gb|EDR15354.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1268
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 65/165 (39%), Gaps = 32/165 (19%)
Query: 531 ELLNCGYKPDAEPFLS-----MMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLE 585
EL+ G+ P L M+ QT ++S + RI I+ D G LE
Sbjct: 797 ELIQAGFHPSQCKILQDKIKFMVQQTINSS-----VEKYRIPIKESTGGYIVADPTGLLE 851
Query: 586 YGQ----------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVL 623
GQ G +V+ + P P DM+ + AVD+P L + D ++
Sbjct: 852 EGQIYYRSSVPMTDPDTEMDYFVLQGEVVLGRYPIRLPSDMQKVTAVDIPELFNWPDVII 911
Query: 624 FPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPA 668
KG+ + SG DQDG+ V D + + QP P+
Sbjct: 912 VSTKGKFSLASLLSGGDQDGDELLVIKDKLIVDSFKNQPLTVIPS 956
>gi|168049572|ref|XP_001777236.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
gi|162671338|gb|EDQ57891.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
Length = 1040
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 100/434 (23%), Positives = 168/434 (38%), Gaps = 96/434 (22%)
Query: 430 TVAKKC----GYAIYTPSAFQIRYGGYKVTLRNNMFKYKSESTSLDILA---------NS 476
T+ + C G AI + G ++ R +M K S+ DI N+
Sbjct: 483 TLVQGCLFWKGMAIKGTWQVNHQLKGLQILYRPSMVKVTSDPILKDIPTIKSFEVVNTNT 542
Query: 477 KYQREGVARLRLDNVFERKQREVVARLDAILTDSSKVQEALELMSS--AENTNVLKELLN 534
Y+ E ARL D + V A L V++ALE + + E V +EL +
Sbjct: 543 CYKLEE-ARLSQDLIILLSINNVPASFFLEL-----VEKALEKLRTFFTERGQVFRELKS 596
Query: 535 CGYKPD---AEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMM--GCL----------- 578
C PD + L M+ SN +++ + Q+ A++ GCL
Sbjct: 597 CS--PDYAVGDQTLRMIMANIPMSNP-QMQNNLKKITQDKIALLRKGCLPLPQSYYLMGT 653
Query: 579 -----------DEKGTLEYGQ---GLMVVAKKPCLHPGDMRVLRAVDVPALHHMV----D 620
+E ++ G+ G ++V K P H GD+ + AV L+ V
Sbjct: 654 SDPTKEKVLKPNEVAIVKNGEKVIGKVLVYKNPGKHWGDVHIFDAVWDERLNPYVGPTKH 713
Query: 621 CVLFPAKGERPHTNECSGSDQDGEIYFVC--------WDHDRIPPLQFQPTAYTPAPEKI 672
+ F +G RP +E + SD G+++++ W RI P P+
Sbjct: 714 AIFFSVRGNRPVVDEIANSDLCGDLFWLISLFTPSLPW--KRIGEKINYPIGDGPSNLTS 771
Query: 673 LARDVTIED--VEEYFADYIVNDSLGIICNAHV--------VYAYSEPDKAMSNRCPDLV 722
A + T+ D ++ F Y GI AH+ YS+ + +S +L+
Sbjct: 772 RALEYTLFDKFLKSRFTPYKPMSQAGIFWTAHMDRYLSLKDADEYSDELELISESLEELI 831
Query: 723 KLSSIVGDFSKTG------------VAATIPSRLRVKIYPDFME--KQDKTWYESQHIVG 768
+ D KTG ++ +P RL +P F++ + ++T+Y S I+G
Sbjct: 832 DIFYRALDADKTGEELCLHRHTFAWMSVKLPRRLEPDCFPHFLKEIQTNRTYYTSTSILG 891
Query: 769 NLY----REVNGIA 778
+Y R V+GI
Sbjct: 892 QIYDMVVRNVDGIG 905
>gi|110738636|dbj|BAF01243.1| hypothetical protein [Arabidopsis thaliana]
Length = 339
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 88/198 (44%), Gaps = 34/198 (17%)
Query: 602 GDMRVLRAVDVPALHHMVD----CVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPP 657
GD+ +L+A V AL V V FP KG R +E +G D DG++YF+ R P
Sbjct: 2 GDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFIS----RNPE 57
Query: 658 L--QFQPT----AYTP-------------APEKILARDVTIEDVEEYFADYIVN---DSL 695
L F+P+ + TP +PE++ + + A ++ DS
Sbjct: 58 LLENFKPSEPWVSLTPPSKSNSGRAPSQLSPEELEEELFEMFLTAGFHASNVIGIAADSW 117
Query: 696 GIICNAHVVYA--YSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFM 753
I + ++ +E M + +L+ + D K G +P++L+ I+P +M
Sbjct: 118 LTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHYM 177
Query: 754 EKQDKTWYESQHIVGNLY 771
E+ K ++S I+G ++
Sbjct: 178 ERDKK--FQSTSILGLIF 193
>gi|320587947|gb|EFX00422.1| RNA-dependent RNA polymerase [Grosmannia clavigera kw1407]
Length = 1358
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%)
Query: 591 MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
++VA+ P D++ +RAV L + D V+F KG+ P ++ SG D DG++ +VCW
Sbjct: 896 VLVARSPAHFASDVQRVRAVFRKELCVLKDVVIFSRKGDSPLADKLSGGDYDGDMAWVCW 955
Query: 651 D 651
D
Sbjct: 956 D 956
>gi|392575871|gb|EIW69003.1| hypothetical protein TREMEDRAFT_73994 [Tremella mesenterica DSM 1558]
Length = 1405
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Query: 568 IQNGQAMMGCLDEKGTLEYGQGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAK 627
I + GC + Y +G ++ + PC P D+R AV P L H+ DC++ A+
Sbjct: 947 IAPSDPVTGC-----RISYLEGPVLALRSPCKLPSDIRKFTAVYRPELVHLTDCIVMSAR 1001
Query: 628 GE--RPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPE 670
+ R + G D DG+ + WD + + P + ++ P+
Sbjct: 1002 DDCRRSPASFLGGGDYDGDTVQIIWDPEIVGPFKNADDSFADTPQ 1046
>gi|212534570|ref|XP_002147441.1| RNA-directed RNA polymerase, putative [Talaromyces marneffei ATCC
18224]
gi|210069840|gb|EEA23930.1| RNA-directed RNA polymerase, putative [Talaromyces marneffei ATCC
18224]
Length = 1361
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 71/178 (39%), Gaps = 24/178 (13%)
Query: 591 MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
++V + P P D++ RAV L H D ++F +G P + SG D DG+ ++CW
Sbjct: 929 VLVGRTPAHCPWDIQRRRAVWKSELRHFKDVIVFSTRGTTPLASLLSGGDYDGDRPWICW 988
Query: 651 DH-------DRIPPLQFQPTAYTPAPEKI-LARDVTIEDVEEYFADYIVN--------DS 694
D + PPL+ PE L + D++ N +
Sbjct: 989 DQGIVETFTNTFPPLE------ESGPEHFGLVKHAQPMSTVGSVGDFLRNAFKFNLAMSN 1042
Query: 695 LGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIP--SRLRVKIYP 750
LG H +Y E + S +L L S + D K+G+ T SR R I P
Sbjct: 1043 LGRCTVEHEKLSYDEKEGISSPLSLELATLLSHLVDSKKSGLQLTEEQWSRYRKSISP 1100
>gi|242216295|ref|XP_002473956.1| predicted protein [Postia placenta Mad-698-R]
gi|220726900|gb|EED80835.1| predicted protein [Postia placenta Mad-698-R]
Length = 1264
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 61/159 (38%), Gaps = 22/159 (13%)
Query: 531 ELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ-- 588
ELL G++P P L + A + + +I + D G LE GQ
Sbjct: 792 ELLQAGFQPLKLPLLYEKLRKVVADRIEDYIRNYKITVPRSAEAFIIPDPYGVLEEGQIH 851
Query: 589 --------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKG 628
G +++ + P P D+R ++AV P L V+ ++ P KG
Sbjct: 852 FKSTQNLKDPLEESNPTIVTGDVLIYRNPTRVPSDVRKVKAVSHPKLDKYVNVIVLPVKG 911
Query: 629 ERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTP 667
R N +G D DG++ +D D + + P P
Sbjct: 912 SRSLANILAGGDVDGDVCTCIFDPDLVDSFENSPINDPP 950
>gi|320034225|gb|EFW16170.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
Length = 1289
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 579 DEKGTLEYGQGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSG 638
D +G + ++V + P P D++ RAV L + D ++FP G P + SG
Sbjct: 856 DSEGYTDLDGMDVLVGRNPAHLPSDIQKRRAVFKKELRYFKDVIVFPTAGALPLASMLSG 915
Query: 639 SDQDGEIYFVCWDHDRIPPLQFQPTAYTPA--PEK 671
D DG+ + CWD + QF T + P PE+
Sbjct: 916 GDYDGDQVWTCWDPQLVN--QFTNTPFDPKKIPER 948
>gi|356497593|ref|XP_003517644.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine
max]
Length = 953
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 60/133 (45%), Gaps = 17/133 (12%)
Query: 531 ELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ-- 588
E++ CG P EPFL F +LR ++++ + +MG +D G L+ Q
Sbjct: 533 EMILCGI-PLDEPFLKHHLSRFAREEKKKLRG-GKLYMPDCFYLMGTVDPTGHLKKNQVC 590
Query: 589 ---------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVD----CVLFPAKGERPHTNE 635
G ++V + P LH GD+ + A V L V + FP G R +E
Sbjct: 591 IIHENSQIVGDVLVYRNPGLHFGDIHKMDATYVKELESYVGHSKYGIFFPRVGTRSVADE 650
Query: 636 CSGSDQDGEIYFV 648
+G D DG+ Y+V
Sbjct: 651 IAGGDFDGDTYWV 663
>gi|409079756|gb|EKM80117.1| hypothetical protein AGABI1DRAFT_127795 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1114
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 589 GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFV 648
G +++ + PC P D++ +A+DVP LH D ++ +G R + +G D DG+ +
Sbjct: 710 GDVLITRDPCRLPTDVQKWKAIDVPELHQYKDVIILSVQGPRRAADWLAGGDYDGDKAKL 769
Query: 649 CW 650
W
Sbjct: 770 IW 771
>gi|426198482|gb|EKV48408.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
Length = 1114
Score = 48.5 bits (114), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 589 GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFV 648
G +++ + PC P D++ +A+DVP LH D ++ +G R + +G D DG+ +
Sbjct: 710 GDVLITRDPCRLPTDVQKWKAIDVPELHQYKDVIILSVQGPRRAADWLAGGDYDGDKAKL 769
Query: 649 CW 650
W
Sbjct: 770 IW 771
>gi|425774605|gb|EKV12907.1| RNA-directed RNA polymerase, putative [Penicillium digitatum Pd1]
gi|425776464|gb|EKV14681.1| RNA-directed RNA polymerase, putative [Penicillium digitatum PHI26]
Length = 1445
Score = 48.5 bits (114), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 591 MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
++V + P P D++ +AV L H D ++FP G P SG D DG+ ++CW
Sbjct: 1048 VLVGRLPAHLPSDIQRRKAVWKTELRHFKDVIVFPTTGNFPLAGMLSGGDYDGDTPWICW 1107
Query: 651 D 651
D
Sbjct: 1108 D 1108
>gi|345562071|gb|EGX45143.1| hypothetical protein AOL_s00173g244 [Arthrobotrys oligospora ATCC
24927]
Length = 1092
Score = 48.5 bits (114), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 584 LEYGQGLMVVAKKPCLHPGDMRVLRAVDVP----ALHHMVDCVLFPAKGERPHTNECSGS 639
L++ G ++V + P D++ AV P A +VDC++FP GE + SG
Sbjct: 643 LKFLSGKVLVGRSPAYIASDIQSAIAVMNPEVLEAYGDLVDCIVFPIVGEYSLASRLSGG 702
Query: 640 DQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDV 682
D DG+ V WD + P + + + K L ++ T +D
Sbjct: 703 DYDGDSVLVIWDQRVVEPFSSRLPPKSTSVRKDLFKESTEQDT 745
>gi|303319845|ref|XP_003069922.1| RNA dependent RNA polymerase family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240109608|gb|EER27777.1| RNA dependent RNA polymerase family protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 1372
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 579 DEKGTLEYGQGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSG 638
D +G + ++V + P P D++ RAV L + D ++FP G P + SG
Sbjct: 939 DSEGYTDLDGMDVLVGRNPAHLPSDIQKRRAVFKKELRYFKDVIVFPTAGALPLASMLSG 998
Query: 639 SDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILAR 675
D DG+ + CWD P L Q T P+KI R
Sbjct: 999 GDYDGDQVWTCWD----PQLVNQFTNAPFDPKKIPER 1031
>gi|225557198|gb|EEH05485.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus G186AR]
Length = 1388
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 591 MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
+++A+ P D++ R+V L HM D ++FP G+ P + SG D DG+ +VCW
Sbjct: 953 VLLARLPAHLATDIQKRRSVYKNELRHMKDVIVFPTTGDTPLASLLSGGDYDGDQCWVCW 1012
Query: 651 DHDRIPPLQFQPTAYTPA 668
D I +F+ T + P
Sbjct: 1013 DP--IIVREFKSTEFDPG 1028
>gi|327354916|gb|EGE83773.1| hypothetical protein BDDG_06718 [Ajellomyces dermatitidis ATCC
18188]
Length = 1096
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 591 MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
+++A+ P D++ R+V AL H D ++FP G+ P + SG D DG+ +VCW
Sbjct: 666 ILLARLPAHLSTDIQKRRSVYKNALRHFKDVIVFPTTGDTPLASLLSGGDYDGDQCWVCW 725
Query: 651 D 651
D
Sbjct: 726 D 726
>gi|325093828|gb|EGC47138.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus H88]
Length = 1387
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 591 MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
+++A+ P D++ R+V L HM D ++FP G+ P + SG D DG+ +VCW
Sbjct: 953 VLLARLPAHLATDIQKRRSVYKNELRHMKDVIVFPTTGDTPLASLLSGGDYDGDQCWVCW 1012
Query: 651 DHDRIPPLQFQPTAYTPA 668
D I +F+ T + P
Sbjct: 1013 DP--IIVREFKSTEFDPG 1028
>gi|240277746|gb|EER41254.1| RNA-directed RNA polymerase [Ajellomyces capsulatus H143]
Length = 1317
Score = 48.5 bits (114), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 591 MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
+++A+ P D++ R+V L HM D ++FP G+ P + SG D DG+ +VCW
Sbjct: 883 VLLARLPAHLATDIQKRRSVYKNELRHMKDVIVFPTTGDTPLASLLSGGDYDGDQCWVCW 942
Query: 651 DHDRIPPLQFQPTAYTPA 668
D I +F+ T + P
Sbjct: 943 DP--IIVREFKSTEFDPG 958
>gi|239612171|gb|EEQ89158.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis ER-3]
Length = 1382
Score = 48.1 bits (113), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 591 MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
+++A+ P D++ R+V AL H D ++FP G+ P + SG D DG+ +VCW
Sbjct: 952 ILLARLPAHLSTDIQKRRSVYKNALRHFKDVIVFPTTGDTPLASLLSGGDYDGDQCWVCW 1011
Query: 651 D 651
D
Sbjct: 1012 D 1012
>gi|261202284|ref|XP_002628356.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis SLH14081]
gi|239590453|gb|EEQ73034.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis SLH14081]
Length = 1382
Score = 48.1 bits (113), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 591 MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
+++A+ P D++ R+V AL H D ++FP G+ P + SG D DG+ +VCW
Sbjct: 952 ILLARLPAHLSTDIQKRRSVYKNALRHFKDVIVFPTTGDTPLASLLSGGDYDGDQCWVCW 1011
Query: 651 D 651
D
Sbjct: 1012 D 1012
>gi|449541618|gb|EMD32601.1| hypothetical protein CERSUDRAFT_126709 [Ceriporiopsis subvermispora
B]
Length = 1473
Score = 48.1 bits (113), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 9/98 (9%)
Query: 589 GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFV 648
G ++V + PC D++ + AV P L D ++ P KG+R + +G D DG++
Sbjct: 1064 GDVLVYRNPCRVASDVQKVTAVSHPKLTEYTDVIVLPTKGDRSLASLLAGGDVDGDVCVC 1123
Query: 649 CWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYF 686
WD + + Q P E L EEYF
Sbjct: 1124 IWDPEIVSQFQLPPGPPREPDESFL---------EEYF 1152
>gi|401882100|gb|EJT46373.1| RNA-directed RNA polymerase [Trichosporon asahii var. asahii CBS
2479]
Length = 1106
Score = 47.8 bits (112), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 588 QGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECS---GSDQDGE 644
+G +++ + PC P D+R +RAV L H+ DC++ A + S G D DG+
Sbjct: 715 EGDVLIFRSPCKLPTDVRKMRAVYHSKLKHLQDCIVMSADSAMCTASPASLLAGGDYDGD 774
Query: 645 IYFVCWDHDRIPPLQFQP 662
V WD D + P + P
Sbjct: 775 TATVIWDEDLVKPFRNAP 792
>gi|406700852|gb|EKD04014.1| RNA-directed RNA polymerase [Trichosporon asahii var. asahii CBS
8904]
Length = 1087
Score = 47.8 bits (112), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 588 QGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECS---GSDQDGE 644
+G +++ + PC P D+R +RAV L H+ DC++ A + S G D DG+
Sbjct: 696 EGDVLIFRSPCKLPTDVRKMRAVYHSKLKHLQDCIVMSADSAMCTASPASLLAGGDYDGD 755
Query: 645 IYFVCWDHDRIPPLQFQP 662
V WD D + P + P
Sbjct: 756 TATVIWDEDLVKPFRNAP 773
>gi|154285562|ref|XP_001543576.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150407217|gb|EDN02758.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1055
Score = 47.4 bits (111), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 591 MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCW 650
+++A+ P D++ ++V L HM D ++FP G+ P + SG D DG+ +VCW
Sbjct: 619 VLLARLPAHLATDIQKRKSVYKNELRHMKDVIVFPTTGDTPLASLLSGGDYDGDQCWVCW 678
Query: 651 DHDRIPPLQFQPTAYTPA 668
D I +F+ T + P
Sbjct: 679 DP--IIVREFKSTEFDPG 694
>gi|336376861|gb|EGO05196.1| hypothetical protein SERLA73DRAFT_68825 [Serpula lacrymans var.
lacrymans S7.3]
gi|336389793|gb|EGO30936.1| hypothetical protein SERLADRAFT_432597 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1094
Score = 47.4 bits (111), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 25/178 (14%)
Query: 521 SSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDE 580
SS E T ++ LL+ G+ P P L+ + +++ R R+ + D
Sbjct: 601 SSLEETVMV--LLDAGFTPGDCPILADKLKHIIDTSVDNYVQRYRVDVPMSCIAFMVPDP 658
Query: 581 KGTLEYGQ----------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHM 618
GTL G+ G +++ + PC P D++ +RAV+ L H
Sbjct: 659 TGTLGPGEIHIKSSHPKFLCEDGTETDIVLGDVLLTRHPCKLPTDVQKVRAVEKAELRHF 718
Query: 619 VDCVLFPAKG-ERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILAR 675
D ++ P KG R + +G D DG+ W + + P + Y+ P + A+
Sbjct: 719 KDVIVCPVKGTNRRFADLLAGGDYDGDKAIAIWQKEIVSPFKNADLKYSHPPADLPAQ 776
>gi|353241158|emb|CCA72990.1| related to qde-1 RNA-dependent RNA polymerase (RdRP) [Piriformospora
indica DSM 11827]
Length = 1766
Score = 46.6 bits (109), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 566 IFIQNGQAMMGCLDEKG-TLEYGQGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLF 624
+F AM+ E G +++ +G ++V + P L P DMR ++AV VP L +
Sbjct: 1313 VFFSPKSAMVDS--ETGLAVQFIEGDVIVGRHPALLPTDMRKVKAVFVPKLQDFKGILFC 1370
Query: 625 PAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQP 662
GE P + +G D DG+ + W+ + P + P
Sbjct: 1371 SIHGELPLASILAGGDYDGDEGTIIWEQRIVHPFKNAP 1408
>gi|299747734|ref|XP_001837224.2| hypothetical protein CC1G_00360 [Coprinopsis cinerea okayama7#130]
gi|298407654|gb|EAU84841.2| hypothetical protein CC1G_00360 [Coprinopsis cinerea okayama7#130]
Length = 1039
Score = 46.6 bits (109), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 64/160 (40%), Gaps = 31/160 (19%)
Query: 532 LLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ--- 588
LL G+ P P L+ + + + L RI + M D++G L+ G+
Sbjct: 531 LLQSGFHPGFCPVLAEKLKAVIRTRVSRLTHSYRIEVPMSCMAMIVPDKRGILKEGEIFF 590
Query: 589 -------------------GLMVVAKKPCLHPGDMR--VLRAVDVPALHHMVDCVLFPAK 627
G +++ + PC P D++ +AVD P LH +V ++ K
Sbjct: 591 RSSHRDLLDRDGEKTDIITGDVLITRYPCKLPTDIQKASCKAVDHPGLHDLVGVIILSTK 650
Query: 628 GERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTP 667
G R + G D DG+ + W PP+ A+TP
Sbjct: 651 GTRRAADFIGGGDYDGDKAMIIWH----PPMV---EAFTP 683
>gi|429863502|gb|ELA37949.1| RNA-dependent RNA polymerase, partial [Colletotrichum
gloeosporioides Nara gc5]
Length = 989
Score = 46.6 bits (109), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 21/144 (14%)
Query: 529 LKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ 588
L L + G++P + F+ M + + + I I N + +D G LE +
Sbjct: 754 LSYLGDGGFEPTKQKFMQDMMWKLQSKKCENVTKKMSIRIPNSAYLYMVVDFWGILEENE 813
Query: 589 ------------GL---------MVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAK 627
G ++VA+ P D++ ++AV P L + + ++FPAK
Sbjct: 814 VHVCFSSTFRTEGFSDSMLHGCDVLVARSPAHLVSDIQRVKAVFKPELRALKNVIVFPAK 873
Query: 628 GERPHTNECSGSDQDGEIYFVCWD 651
G+ ++ SG D DG +VCW+
Sbjct: 874 GDVALADKLSGGDYDGGRAWVCWE 897
>gi|242207403|ref|XP_002469555.1| predicted protein [Postia placenta Mad-698-R]
gi|220731359|gb|EED85204.1| predicted protein [Postia placenta Mad-698-R]
Length = 1264
Score = 46.2 bits (108), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 589 GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFV 648
G +++ + P P D+R ++AV P L V+ ++ P KG R N +G D DG++
Sbjct: 872 GDVLIYRNPTRVPSDVRKVKAVSHPKLDKYVNVIVLPVKGSRSLANILAGGDVDGDVCTC 931
Query: 649 CWDHDRIPPLQFQPTAYTP 667
+D D + + P P
Sbjct: 932 IFDPDLVDSFENSPINDPP 950
>gi|353241842|emb|CCA73629.1| hypothetical protein PIIN_07582 [Piriformospora indica DSM 11827]
Length = 1021
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 584 LEYGQGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDG 643
+++ +G +++ + P L P D++ +R ++ +L ++ +G RP + SG D DG
Sbjct: 626 VDFTKGEVLIGRHPALLPTDIQKVRLANITSLKQKRGLIICSTQGSRPLADLLSGGDYDG 685
Query: 644 EIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDV----TIEDV 682
+ + WD + + Q T + P ++ A V TI+D+
Sbjct: 686 DEAIIIWDRNVVNAFQNADTQLSFKPAEVDASFVKDSQTIQDL 728
>gi|402219719|gb|EJT99791.1| hypothetical protein DACRYDRAFT_100977 [Dacryopinax sp. DJM-731
SS1]
Length = 1204
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 587 GQGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIY 646
G L++ +K G + ++AVD+ LH+M D ++ +GER + G D DG+
Sbjct: 805 GDVLLLYQEKKFYAEGIVIKMKAVDIDELHYMYDVIVMSTEGERSPASMLGGGDYDGDRA 864
Query: 647 FVCWDHDRIPPLQFQPTAYTPAPE---KILARDVT 678
V W+ + P + + PE + L RD T
Sbjct: 865 TVIWEPQIVEPFKTADPKFADQPENFDRFLDRDTT 899
>gi|255546343|ref|XP_002514231.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
gi|223546687|gb|EEF48185.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
Length = 114
Score = 45.8 bits (107), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 585 EYGQGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVD----CVLFPAKGERPHTNECSGSD 640
E+ G ++V + P LH GD+ VL+A V AL V + FP KG + +E +G D
Sbjct: 26 EHISGKVLVYRNPGLHFGDIHVLKATYVKALEDFVGNAKYAIFFPCKGPQSLADEIAGGD 85
Query: 641 QDGEIYFV 648
+ ++YFV
Sbjct: 86 FNNDMYFV 93
>gi|393224586|gb|EJD32918.1| hypothetical protein AURDEDRAFT_177990 [Auricularia delicata
TFB-10046 SS5]
Length = 655
Score = 44.7 bits (104), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 20/150 (13%)
Query: 578 LDEKG-TLEYGQGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNEC 636
LD +G + +G V+ + PC+ P D++ +RAV+ L D V+ +G R +
Sbjct: 250 LDSQGYQFDVLEGDCVMGRHPCMLPSDLQKVRAVNRAELGQYRDVVVCATRGRRSLASLL 309
Query: 637 SGSDQDGEIYFVCWDHDRIPPLQFQPTA----YTPAPE----------KILARDVTIEDV 682
+G D DG+ + W + P + A TP E LA V+ +
Sbjct: 310 AGGDYDGDKVVITWYAPIVTPFEMSEEASERFATPPAELASCFEQESAPTLAELVSTGPL 369
Query: 683 EEYFADYIV-----NDSLGIICNAHVVYAY 707
+ I+ +G++ N H+V AY
Sbjct: 370 SDKGPAVILRGLRDKGRVGLVANFHLVSAY 399
>gi|168064128|ref|XP_001784017.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
gi|162664466|gb|EDQ51185.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
Length = 1042
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 589 GLMVVAKKPCLHPGDMRVLRAVDVPALHHMV----DCVLFPAKGERPHTNECSGSDQDGE 644
G ++V K P H GD+ V AV L+ V + F +G RP +E + SD DG+
Sbjct: 684 GKVLVYKNPGKHWGDVHVFDAVWDERLNPYVGPANQTIFFSVRGNRPVVDEIANSDLDGD 743
Query: 645 IYFVCWD 651
Y+VC++
Sbjct: 744 FYWVCFN 750
>gi|403160269|ref|XP_003320812.2| hypothetical protein PGTG_02834 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375169485|gb|EFP76393.2| hypothetical protein PGTG_02834 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1164
Score = 44.7 bits (104), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 588 QGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYF 647
+G VVA+ PC+ P D R ++AV L D ++ +G++ + SG D DG++
Sbjct: 711 KGDCVVARSPCVLPTDARKVKAVTNQRLACYEDVLVCSIQGKKSLLDYLSGGDYDGDVVI 770
Query: 648 VCWD 651
V WD
Sbjct: 771 VIWD 774
>gi|341039071|gb|EGS24063.1| hypothetical protein CTHT_0007750 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 392
Score = 44.3 bits (103), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 25/121 (20%)
Query: 637 SGSDQDGEIYFVCWD---HDRIPPLQ-FQPTAYTPAPEKILARDVTIEDVEEYFADYIVN 692
SG D DG+++ V WD + P L+ F+P Y P L ++TI D+ +FAD+
Sbjct: 110 SGGDLDGDLFHVIWDPALFNAKPKLETFEPADYPRIPPLELEGEITIRDMANFFADFKT- 168
Query: 693 DSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIY-PD 751
++PD C L KL+S + SKTG + + + + PD
Sbjct: 169 -------------ILADPD------CMKLAKLASSAVNLSKTGRPVDMTQLPKCRRWRPD 209
Query: 752 F 752
F
Sbjct: 210 F 210
>gi|395335049|gb|EJF67425.1| hypothetical protein DICSQDRAFT_177042 [Dichomitus squalens
LYAD-421 SS1]
Length = 1306
Score = 43.9 bits (102), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 589 GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFV 648
G +++ + PC P D++ + AV L D ++ P G R + +G D DG++ V
Sbjct: 871 GEVLIYRNPCRLPSDVQKVTAVQCDVLAAYTDVIVLPTVGARSFASYLAGGDYDGDVAVV 930
Query: 649 CWDHDRI------PPLQFQPTAY 665
+D DR+ PP+ +P +
Sbjct: 931 IYD-DRLVKDFTTPPVTQEPPDF 952
>gi|219117572|ref|XP_002179579.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408632|gb|EEC48565.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|225382106|gb|ACN89265.1| putative RNA-dependent RNA polymerase [Phaeodactylum tricornutum]
Length = 976
Score = 43.5 bits (101), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 27/131 (20%)
Query: 561 RTRARIFIQNGQAMMGCLDEKGTLEYG-----------QGLMVVAKKPCLHPGDMRVLRA 609
+TR RI + M G D G + +G + L+ V + PC+ P D R+L
Sbjct: 739 QTRCRI---HHTFMPGYADPTGAIPHGHVFVTGSKPFQENLLFVTRSPCIFPSDGRLLPN 795
Query: 610 VDVPALHHMVD-----------CVLFP--AKGERPHTNECSGSDQDGEIYFVCWDHDRIP 656
+ ++D ++F G +P + D DG++YFVCWD + +
Sbjct: 796 LVTKPNAMVIDDWNWLNSLPFGALIFADATPGMKPLPAHIANGDLDGDLYFVCWDSEILR 855
Query: 657 PLQFQPTAYTP 667
++ P P
Sbjct: 856 NVRADPIVEEP 866
>gi|440493517|gb|ELQ75977.1| RNA-directed RNA polymerase QDE-1 [Trachipleistophora hominis]
Length = 1082
Score = 42.7 bits (99), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 30/154 (19%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
+ + V P + P+ +LSNR++R++ N +R++F +T
Sbjct: 831 IRTVHVYPLSIACMYPKNNLSNRILRNF----SNMIRITF-----------------KNT 869
Query: 328 NGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPE---LTAAD-I 383
E + E + + NGI I D+ + +A S+SQ R N+ W + + L +D +
Sbjct: 870 CDEN---VMEYIREIMSNGITI-DRPYYFVATSSSQLRSNSAWFISPYRKGNVLVGSDYV 925
Query: 384 RERMGDFREIKNVTKYAARLGQSFASSREALHVD 417
R MG E N+ KY R+G +S+ VD
Sbjct: 926 RNWMGVI-ECDNIGKYMIRVGLGLSSTFSMFEVD 958
>gi|328855319|gb|EGG04446.1| hypothetical protein MELLADRAFT_117081 [Melampsora larici-populina
98AG31]
Length = 789
Score = 42.7 bits (99), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 63/154 (40%), Gaps = 18/154 (11%)
Query: 588 QGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYF 647
+G +VA+ PC+HP D R + AV L D ++ GER + SG G+
Sbjct: 538 RGECIVARSPCVHPCDARKVTAVANQNLVRYDDVLVCSVLGERSLLDYLSG----GDTVT 593
Query: 648 VCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAH----- 702
V WD P +P E I ++ +++ E+YF +N NAH
Sbjct: 594 VIWD-----PHITEPFVNADVGECISQKE--LKEYEKYFEVSTINSISNSKDNAHHSSLT 646
Query: 703 --VVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKT 734
V Y D S D +++S +V F T
Sbjct: 647 SGTVKDYVHLDDNGSTSYEDALRMSQLVTLFQST 680
>gi|224144332|ref|XP_002336131.1| hypothetical protein POPTRDRAFT_584507 [Populus trichocarpa]
gi|222873590|gb|EEF10721.1| hypothetical protein POPTRDRAFT_584507 [Populus trichocarpa]
Length = 211
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 20/95 (21%)
Query: 733 KTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGA 792
K G +P L+ +++P FMEK +K Y S I+G +Y +V
Sbjct: 38 KGGRKIEVPEALKAELFPHFMEKHEKKTYRSTSILGKIYDKVKA---------------- 81
Query: 793 MQFYDTDMEVNGFKEVAMQFDGF--KYRTEYDNKL 825
+ D D+ N + +++ G +YRTE N L
Sbjct: 82 --YEDMDLSSNVHESCLVKWKGLYGQYRTEMRNAL 114
>gi|409052182|gb|EKM61658.1| hypothetical protein PHACADRAFT_135496 [Phanerochaete carnosa
HHB-10118-sp]
Length = 913
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%)
Query: 589 GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFV 648
G ++ + P D+R +RAVDVP L D ++ P KG + +G D DG+
Sbjct: 513 GDCLLYRNPARLASDVRKVRAVDVPELVLYKDVIVVPCKGPVSLPSMLAGGDVDGDTAVC 572
Query: 649 CWDHDRIPPL 658
WD + P
Sbjct: 573 IWDPALVKPF 582
>gi|392597983|gb|EIW87305.1| hypothetical protein CONPUDRAFT_87147 [Coniophora puteana
RWD-64-598 SS2]
Length = 1075
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 588 QGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYF 647
+G ++V + P P D++ +RAV P L D ++FP G R + G G+
Sbjct: 695 KGDVLVLRNPTRLPSDVQKVRAVTYPELEKYYDVIIFPTCGARSLASYLGG----GDTVL 750
Query: 648 VCWDHDRIPPLQFQPTAYTP 667
V WD + P P P
Sbjct: 751 VVWDKQLVQPFNSTPLYEEP 770
>gi|328861348|gb|EGG10451.1| hypothetical protein MELLADRAFT_103030 [Melampsora larici-populina
98AG31]
Length = 1075
Score = 41.6 bits (96), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 589 GLMVVAKKPCLHPGDMRVLRAVDVPALHHM-VDCVLFPAKGERPHTNECSGSDQDGEIYF 647
G ++ + PC P D+R ++ V L + D ++ +G+R + SG D DG+
Sbjct: 598 GPALIWRSPCAAPIDVRKIQLVANEHLQRVYFDVIVCSTRGDRAMLSMLSGGDYDGDQVS 657
Query: 648 VCWDHDRIPPLQ-FQPTAY 665
V WD + P Q P AY
Sbjct: 658 VTWDKRLVDPFQNADPGAY 676
>gi|361124327|gb|EHK96429.1| putative RNA-dependent RNA polymerase 1 [Glarea lozoyensis 74030]
Length = 900
Score = 41.2 bits (95), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 580 EKGTLEYGQGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGS 639
+ G L + Q ++V A+ P D++ ++AV L + D ++F KG + SG
Sbjct: 476 QSGVLLHRQDVLV-ARSPAHFVSDIQKVKAVAKVELIGLKDVIVFSTKGNPSLAAKLSGG 534
Query: 640 DQDGEIYFVCWD 651
D DG++ ++CW+
Sbjct: 535 DYDGDLAWLCWE 546
>gi|393904651|gb|EJD73759.1| hypothetical protein LOAG_18838 [Loa loa]
Length = 543
Score = 40.8 bits (94), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 10/83 (12%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISST 327
V K+++TP++V PE+ + NRV+R++ + + LR+ F D+D +P +T
Sbjct: 464 VRKVVITPTRVLLVVPELLMGNRVLRTFDKDGNGALRIQFRDDD--------GTPLRLNT 515
Query: 328 NGERRTRIYERVLSTLRNGIVIG 350
G I +TL GI IG
Sbjct: 516 TG--LFLIQTTTFNTLSRGIYIG 536
>gi|392597508|gb|EIW86830.1| hypothetical protein CONPUDRAFT_115565 [Coniophora puteana
RWD-64-598 SS2]
Length = 1143
Score = 40.8 bits (94), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 589 GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFV 648
G +++ + PC P D++ + AV L D ++ +G+R + +G D DG+ V
Sbjct: 745 GSVLLTRHPCKLPTDVQKVTAVQRGELAGYTDVIVCSIQGDRRFADLLAGGDYDGDKAIV 804
Query: 649 CWDHDRIPPLQFQPTAYTPAPEKI----LARDVTIEDVEE 684
W+ I + ++ APE + L ++T+E E
Sbjct: 805 IWEPTIINTFRNADLKFSKAPEDLMSHFLKENITVEQFLE 844
>gi|300709176|ref|XP_002996755.1| hypothetical protein NCER_100131 [Nosema ceranae BRL01]
gi|239606078|gb|EEQ83084.1| hypothetical protein NCER_100131 [Nosema ceranae BRL01]
Length = 849
Score = 40.8 bits (94), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Query: 272 LVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGER 331
+VTP ++ + P + SNR++R + E FLR+SF +ED L +I T +
Sbjct: 773 VVTPLRIVYKLPVVFESNRILREFDYE--KFLRISFREED--------LKTKIKDTVNKD 822
Query: 332 RTRIYERVLSTLRNGIVIGDK 352
+ IY+ + L GI +G K
Sbjct: 823 QNFIYDYFRNILNEGIFVGKK 843
>gi|390599418|gb|EIN08814.1| hypothetical protein PUNSTDRAFT_44349 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 1065
Score = 40.4 bits (93), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%)
Query: 606 VLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAY 665
+++AV PALH + ++ KG+R + +G D DG+ FV WD + P + Y
Sbjct: 742 LVKAVYRPALHRYTNQIVISVKGDRSLASILAGGDYDGDKCFVTWDPAIVEPFKNAHLRY 801
Query: 666 TPAPE 670
P+
Sbjct: 802 ADPPD 806
>gi|409051063|gb|EKM60539.1| hypothetical protein PHACADRAFT_82474, partial [Phanerochaete
carnosa HHB-10118-sp]
Length = 639
Score = 40.0 bits (92), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 57/132 (43%), Gaps = 10/132 (7%)
Query: 564 ARIFIQNGQAMMGCLDEKGTLEYGQGLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVL 623
I++++ ++ D K + G +++ + PC P D++ ++AV+ L D V+
Sbjct: 417 GEIYVESSAPLLSA-DGKTEADVIVGDVLITRHPCKVPSDVQKVKAVNRRELRGYKDLVV 475
Query: 624 FPAKGERPHT--------NECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKI-LA 674
KG R T + G D DG+ V W+ + + Q A+ P+ + L
Sbjct: 476 VSTKGHRVQTQLLDRHLLSMLGGGDYDGDRVQVFWNPELVDGFQPADPAFATPPKSVELG 535
Query: 675 RDVTIEDVEEYF 686
+ E VE +
Sbjct: 536 LEKNTESVESFL 547
>gi|262375872|ref|ZP_06069103.1| predicted protein [Acinetobacter lwoffii SH145]
gi|262308966|gb|EEY90098.1| predicted protein [Acinetobacter lwoffii SH145]
Length = 1147
Score = 40.0 bits (92), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 17/110 (15%)
Query: 492 FERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQT 551
F+RK+R A L + T + K + A+ L+ NV++++L + D +
Sbjct: 389 FQRKER---AGLLIMATGTGKTRTAIALVDVLMKANVVQKVL---FLADRTSLVVQATNA 442
Query: 552 FHAS-------NLLELRTR-ARIFIQNGQAMMGCLDE---KGTLEYGQGL 590
F A+ NL+E +T+ R+++ Q MMG +DE GT +YG G+
Sbjct: 443 FKANLPDSAPVNLVESKTQNGRVYLSTYQTMMGLIDEMNADGTRKYGTGM 492
>gi|409047033|gb|EKM56512.1| hypothetical protein PHACADRAFT_118286 [Phanerochaete carnosa
HHB-10118-sp]
Length = 965
Score = 39.7 bits (91), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 589 GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFV 648
G +++ + P P D++ +RAV P +D ++ P KG R + +G D DG++
Sbjct: 578 GDVLIYRNPARVPSDVQKVRAVCRPEYADYLDVIILPTKGRRSLASLLAGGDYDGDVATC 637
Query: 649 CWDHDRIPPLQFQPTAYTPAPEKILAR 675
+D + F+ +T P L +
Sbjct: 638 IFDPQIVG--DFRQPVFTAEPPNFLEK 662
>gi|389740950|gb|EIM82140.1| hypothetical protein STEHIDRAFT_124929 [Stereum hirsutum FP-91666
SS1]
Length = 982
Score = 39.7 bits (91), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 3/106 (2%)
Query: 589 GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFV 648
G ++V + PC P D++ + AV L D ++F KG R + + D DG+
Sbjct: 567 GPVLVTRNPCKLPSDIQKVTAVFCAELRDYDDVIVFSTKGRRSLASLLATGDYDGDKAVA 626
Query: 649 CWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDS 694
W + + T + P +++ E E AD+++ S
Sbjct: 627 IWQPEIVDDFVNADTKFADPPADLMS---FFEKENETVADFLLRTS 669
>gi|163816754|ref|ZP_02208117.1| hypothetical protein COPEUT_02944 [Coprococcus eutactus ATCC 27759]
gi|158448011|gb|EDP25006.1| hypothetical protein COPEUT_02944 [Coprococcus eutactus ATCC 27759]
Length = 554
Score = 39.7 bits (91), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 56/277 (20%), Positives = 110/277 (39%), Gaps = 51/277 (18%)
Query: 364 ERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSNIGKI 423
E+E + ++A++ LT I ++ + + N + + GQ+ N+G
Sbjct: 87 EKELNMPIYATK--LTMGLIENKLKEHNLMNNTRRKVVKYGQNI-----------NLGAF 133
Query: 424 SAELAET---VAKKCGYAIYTPSAFQIRYGGYKV--------TLRNNMFKYKSESTSLDI 472
E T +A AIYTP+ + G +K+ T+ F + L +
Sbjct: 134 RVEFIRTNHSIADSAALAIYTPAGLLVHTGDFKIDYTPVFGGTIDLQRFAELGKKGVLAL 193
Query: 473 LANS-KYQREGVARLRLDNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKE 531
+A+S ++EG F + ++ V D + D+ + + + A N + +++
Sbjct: 194 MADSTNAEKEG---------FTQSEKTVGRTFDNLFNDNK--DHRIIIATFASNVDRVQQ 242
Query: 532 LLNCGYKPDAEPFL---SMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTL---- 584
++N YK D + + SM+ AS L + I Q M DEK L
Sbjct: 243 IINSAYKYDRKVIIEGRSMVNIITTASELGYINIPDNTLIDISQ-MKNYPDEKVVLITTG 301
Query: 585 EYGQGLMVVAK-------KPCLHPGDMRVLRAVDVPA 614
G+ + +++ K + PGD+ + + +P
Sbjct: 302 SQGENMAALSRIAASIHNKVAIKPGDVVIFSSHPIPG 338
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,513,358,035
Number of Sequences: 23463169
Number of extensions: 566376962
Number of successful extensions: 1352302
Number of sequences better than 100.0: 752
Number of HSP's better than 100.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 85
Number of HSP's that attempted gapping in prelim test: 1348133
Number of HSP's gapped (non-prelim): 1484
length of query: 890
length of database: 8,064,228,071
effective HSP length: 152
effective length of query: 738
effective length of database: 8,792,793,679
effective search space: 6489081735102
effective search space used: 6489081735102
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 82 (36.2 bits)