BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035741
(890 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LQV2|RDR1_ARATH RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2
SV=1
Length = 1107
Score = 902 bits (2330), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/1038 (48%), Positives = 630/1038 (60%), Gaps = 169/1038 (16%)
Query: 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAAD 58
M K I ++GF + S + VK+FLE TG GTV ++V Q K G R +AIV+FT+
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60
Query: 59 FIKCLARERLSYGNSFLKASSAKRRTPHFAKRTPHYKLGGDLKLNFGCQISKDKFSVFWS 118
I A ERL YG S+LKA ++ + + H G LK+ FGCQ+S KF WS
Sbjct: 61 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISG--LKMFFGCQVSTKKFLTLWS 118
Query: 119 QENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSGHSVS----------- 167
++V V +RK F S+ DY+LELS E+IWQI+LH P G S
Sbjct: 119 AQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPK 178
Query: 168 --------------------------------------IGQSSAICLELPSRALIPKALK 189
IGQS+A CLELP +P +
Sbjct: 179 IFEKEDQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRE 238
Query: 190 DFFHYKESLVQFTLL--------------------PGF------VFSCNSD--------- 214
+F +Y E L+ PGF +F N+
Sbjct: 239 NFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGP 298
Query: 215 ---------LNQDG------KHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAV 259
LNQ H LE LFHL ECCY+P WLR++Y+K +S G+ P SP +
Sbjct: 299 ALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTI 358
Query: 260 ALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTV 319
+LD GL+Y+ ++ VTP++VYF GPE+++SNRV+R Y I+NFLR+SFVDEDL K+ S
Sbjct: 359 SLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMD 418
Query: 320 LSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELT 379
LSP+ S+ +RRT++Y+R+ S LR+GIVIGDKKFE LAFS+SQ REN+ WMFA +T
Sbjct: 419 LSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDRIT 475
Query: 380 AADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN-------------------- 419
AA IR MGDF I+NV KYAARLGQSF+SSRE L+V S+
Sbjct: 476 AAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVFS 535
Query: 420 --IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK------------VTLRNNMFKYKS 465
IGKISAE A VA+KCG ++PSAFQIRYGGYK ++LR +M K++S
Sbjct: 536 DGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFES 595
Query: 466 ESTSLDILANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEA 516
E+T LD+LA SKYQ R+ + L D+VFE+KQREVV RLDAILT + EA
Sbjct: 596 ENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHEA 655
Query: 517 LELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMG 576
L LM+ ENTN+LK L+ CGYKPDAEPFLSMM Q F AS LLELRT+ RIFI G++MMG
Sbjct: 656 LGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMG 715
Query: 577 CLDEKGTLEYGQ------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHM 618
CLDE TLEYGQ G +VVAK PCLHPGD+RVL+AV+VPAL+HM
Sbjct: 716 CLDETRTLEYGQVVVQYSDPMRPGRRFIITGPVVVAKNPCLHPGDVRVLQAVNVPALNHM 775
Query: 619 VDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVT 678
VDCV+FP KG RPH NECSGSD DG+IYFVCWD + +PP +P YTP P +IL DVT
Sbjct: 776 VDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDYTPEPTQILDHDVT 835
Query: 679 IEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAA 738
IE+VEEYFA+YIVNDSLGII NAH +A EP KA S+ C +L K S DF KTGVAA
Sbjct: 836 IEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFSTAVDFPKTGVAA 895
Query: 739 TIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDT 798
IP L VK YPDFMEK DK YES++++G L+REV AP +IKSF + A + YD
Sbjct: 896 VIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVASKSYDK 955
Query: 799 DMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRDL 858
DMEV+GF+E + F + YD KLGNLMDYYGIKTEAE+LS IM M+KSF K+RD
Sbjct: 956 DMEVDGFEEYVDE--AFYQKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRDA 1013
Query: 859 EAISFSVRSLRKEARAWF 876
E+I +VR+LRKE + F
Sbjct: 1014 ESIGRAVRALRKETLSLF 1031
>sp|Q0DXS3|RDR1_ORYSJ Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp.
japonica GN=RDR1 PE=2 SV=2
Length = 740
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/672 (53%), Positives = 451/672 (67%), Gaps = 63/672 (9%)
Query: 276 SKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRI 335
S VYF GPEI++SNRVVR++ +I+NFLR+SFVDED KL +T LSP+ +S + RT +
Sbjct: 7 STVYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASGHDANRTAL 66
Query: 336 YERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKN 395
Y+RVLS L +GI IG K FE LAFS+SQ R+N+ WMFASR L A+DIR MGDFR I+N
Sbjct: 67 YKRVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRN 126
Query: 396 VTKYAARLGQSFASSREAL------------------HVDSN-IGKISAELAETVAKKCG 436
V KYAARLGQSF+SS E L HV S+ IGKIS+ A VA KC
Sbjct: 127 VAKYAARLGQSFSSSTETLKVQKYEVEEISDIKNGTQHVFSDGIGKISSAFANEVAMKCN 186
Query: 437 YAIYTPSAFQIRYGGYK------------VTLRNNMFKYKSESTSLDILANSKYQ----- 479
+ PSAFQIRYGGYK ++LR +M K++S++ ++D+LA SKYQ
Sbjct: 187 LKRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQPGFLN 246
Query: 480 REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKELLNC 535
R+ + L D+VFE+KQ E V +L+ ++TD EA+ELM E TN +KELL C
Sbjct: 247 RQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKELLLC 306
Query: 536 GYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ------- 588
GY+PD EP+LSM+ QTF AS LLEL+T++RI I G+AMMGCLDE TL+YGQ
Sbjct: 307 GYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIRATS 366
Query: 589 -----------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECS 637
G +V+AK PCLHPGD+R+L AVDVP LHHM +CV+FP +G RPH NECS
Sbjct: 367 GVNDNDRFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHMFNCVVFPQQGPRPHPNECS 426
Query: 638 GSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGI 697
GSD DG+IYFV WD IPP P YTPAP + L DVTIE+VEEYF +YIVN+SLG+
Sbjct: 427 GSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPTETLDHDVTIEEVEEYFTNYIVNESLGM 486
Query: 698 ICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQD 757
I NAHVV+A E KA S+ C +L KL SI DF KTGV A IP L VK YPDFMEK D
Sbjct: 487 IANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPALIPPELHVKEYPDFMEKLD 546
Query: 758 KTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKY 817
K YES+ ++G LYRE+ P IK F +E A + YDTDM V+G+++ +
Sbjct: 547 KVTYESKGVIGKLYREIKKHTPH---IKHFTREVARRSYDTDMIVDGYEDYITE--AMAL 601
Query: 818 RTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRDLEAISFSVRSLRKEARAWFN 877
+ EYD KLGNLMD+YGIK+EAE++S CI++MAK+F KK D +AI +VRSLRKEAR+ F+
Sbjct: 602 KDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSDADAIRLAVRSLRKEARSRFS 661
Query: 878 KKKNDSDSSHKD 889
+ D + D
Sbjct: 662 EMSLDDNGHGHD 673
>sp|O82504|RDR2_ARATH RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana GN=RDR2 PE=3
SV=1
Length = 1133
Score = 456 bits (1172), Expect = e-127, Method: Compositional matrix adjust.
Identities = 279/755 (36%), Positives = 408/755 (54%), Gaps = 99/755 (13%)
Query: 223 LEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVA----LDGGLIYVNKILVTPSKV 278
L+ L CYDPV +++ Q + V + SPA A + ++ + VTPSK+
Sbjct: 334 LKKLHQQSSICYDPVFFVKTQMQSVVK--KMKHSPASAYKRLTEQNIMSCQRAYVTPSKI 391
Query: 279 YFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNG----ERRTR 334
Y GPE+ +N VV+++ + + +F+R++FV+ED KL + LS ++S G RT
Sbjct: 392 YLLGPELETANYVVKNFAEHVSDFMRVTFVEEDWSKLPANALS--VNSKEGYFVKPSRTN 449
Query: 335 IYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIK 394
IY RVLS L GI +G K+FE LAFS SQ R N++WMFAS ++ A DIRE MG FR+I+
Sbjct: 450 IYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVWMFASNEKVKAEDIREWMGCFRKIR 509
Query: 395 NVTKYAARLGQSFASSREALHVDSN----------------------IGKISAELAETVA 432
+++K AAR+GQ F++SR+ L V + IGKIS A+ VA
Sbjct: 510 SISKCAARMGQLFSASRQTLIVRAQDVEQIPDIEVTTDGADYCFSDGIGKISLAFAKQVA 569
Query: 433 KKCGYAIYTPSAFQIRYGGY------------KVTLRNNMFKYKSESTSLDILANSK--- 477
+KCG + + PSAFQIRYGGY K++LR++M K+ S + L++ ++
Sbjct: 570 QKCGLS-HVPSAFQIRYGGYKGVIAVDRSSFRKLSLRDSMLKFDSNNRMLNVTRWTESMP 628
Query: 478 --YQREGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKE 531
RE + L D +FE Q ++ L +L D L+ +S + N+L +
Sbjct: 629 CFLNREIICLLSTLGIEDAMFEAMQAVHLSMLGNMLEDRDAALNVLQKLSGENSKNLLVK 688
Query: 532 LLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ--- 588
+L GY P +EP+LSMM + H S L EL++R RI + G+ ++GC+DE G LEYGQ
Sbjct: 689 MLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRILVPKGRILIGCMDEMGILEYGQVYV 748
Query: 589 ----------------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHH--M 618
G +VV K PCLHPGD+RVL A+
Sbjct: 749 RVTLTKAELKSRDQSYFRKIDEETSVVIGKVVVTKNPCLHPGDIRVLDAIYEVHFEEKGY 808
Query: 619 VDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVT 678
+DC++FP KGERPH NECSG D DG+ +FV WD IP P Y + +++ DVT
Sbjct: 809 LDCIIFPQKGERPHPNECSGGDLDGDQFFVSWDEKIIPSEMDPPMDYAGSRPRLMDHDVT 868
Query: 679 IEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAA 738
+E++ ++F DY+++D+LG+I AH+V+A +P+KA S +C +L L S DF+KTG A
Sbjct: 869 LEEIHKFFVDYMISDTLGVISTAHLVHADRDPEKARSQKCLELANLHSRAVDFAKTGAPA 928
Query: 739 TIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDT 798
+P L+ + +PDF+E+ +K Y S+ + G LYR V S K A+ YD
Sbjct: 929 EMPYALKPREFPDFLERFEKPTYISESVFGKLYRAVKS---SLAQRKPEAESEDTVAYDV 985
Query: 799 DMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCI--MEMAKSFDKKR 856
+E GF+ +R Y KL +LM YYG E E+L+ + EM + D +R
Sbjct: 986 TLEEAGFESFIETAKA--HRDMYGEKLTSLMIYYGAANEEEILTGILKTKEMYLARDNRR 1043
Query: 857 --DL-EAISFSVRSLRKEARAWFNKKKNDSDSSHK 888
D+ + I+ SV+ L KEA WF K D K
Sbjct: 1044 YGDMKDRITLSVKDLHKEAMGWFEKSCEDEQQKKK 1078
>sp|Q7XM31|RDR2_ORYSJ Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp.
japonica GN=RDR2 PE=2 SV=1
Length = 1136
Score = 425 bits (1092), Expect = e-118, Method: Compositional matrix adjust.
Identities = 270/753 (35%), Positives = 389/753 (51%), Gaps = 89/753 (11%)
Query: 220 KHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDG--GLIYVNKILVTPSK 277
+ E + L CY P+ +++++ S S +G L+ ++ +TPSK
Sbjct: 326 RRIFEKMHKLESTCYGPLQFIQQEAYSMKRSHNVLLSNEGEGEGERKLMKCYRVNITPSK 385
Query: 278 VYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGER--RTRI 335
++ GPE ++N VV+ + +F+R++FVDED KL S +S +I + +T +
Sbjct: 386 IFCFGPEEEVTNYVVKHHSAYASDFVRVTFVDEDWSKLSSNAISARIEQGFFSKPFKTGL 445
Query: 336 YERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKN 395
Y R+LS L+ G IG K FE LAFS SQ R N++WMFAS L A IR MG F I++
Sbjct: 446 YYRILSILKKGFSIGPKNFEFLAFSASQLRGNSVWMFASNASLNAGGIRRWMGHFENIRS 505
Query: 396 VTKYAARLGQSFASSREALHV----------------------DSNIGKISAELAETVAK 433
V+K AAR+GQ F+SSR+ V IGKIS A+ VA
Sbjct: 506 VSKCAARMGQLFSSSRQTFEVLRWDVEVIPDIEITTDGSKYIFSDGIGKISLRFAKRVAH 565
Query: 434 KCGY-AIYTPSAFQIRYGGYK------------VTLRNNMFKYKSESTSLDILANSKYQ- 479
G PSAFQIRYGGYK ++LR +M K++SES L+I + SK Q
Sbjct: 566 HVGLDPTNLPSAFQIRYGGYKGVIAIDPMSSIDLSLRPSMKKFESESRMLNITSWSKSQP 625
Query: 480 ----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLKE 531
RE ++ L D +F Q++ + + +LT+ L + +E +K
Sbjct: 626 CYVNREIISLLSTLGIRDEIFVAMQQDEMRETEEMLTNKEVALSVLGKLGGSETKTAVKM 685
Query: 532 LLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ--- 588
LL GY+P +EP+LSM+ + + L ++RTR +I + G+ ++GCLDE G LEYGQ
Sbjct: 686 LLQ-GYEPSSEPYLSMILKAHQENRLTDIRTRCKIHVPKGRVLIGCLDETGVLEYGQVYI 744
Query: 589 ----------------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVD 620
G + + K PCLHPGD+RVL A+ P L MVD
Sbjct: 745 RITKNSKEQKDSNQSYFYNDDGKTATVVGKVAITKNPCLHPGDIRVLEAIYDPDLVGMVD 804
Query: 621 CVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIE 680
C++FP +GERPH NECSG D DG++YF+ WD IP P YT +I+ VT+E
Sbjct: 805 CLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIPEKVDTPMDYTATRPRIMDHVVTLE 864
Query: 681 DVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATI 740
+++++F DY++NDSLG I AH+++A P KA S C L L S+ DF+KTG A +
Sbjct: 865 EIQKHFVDYMINDSLGAISTAHLIHADRSPLKARSPECLQLATLHSMAVDFAKTGAPAEM 924
Query: 741 PSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAM--QFYDT 798
P LR + YPDFME+ +K Y S ++G LYR G + + + A YD
Sbjct: 925 PRTLRPREYPDFMERWEKPMYISNGVLGKLYRSAMGHMEKSGDSGALSSSSAQPSPTYDP 984
Query: 799 DMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIME--MAKSFDKKR 856
D+EV G E +Y Y+ KL LM+YY + E E+L+ I + D KR
Sbjct: 985 DLEVPGSDEFLQA--AEEYYELYEEKLTTLMNYYRAELEDEILTGNIRNKMLYLKRDNKR 1042
Query: 857 DLEA---ISFSVRSLRKEARAWFNKKKNDSDSS 886
E I +V +L +EAR W + + D+S
Sbjct: 1043 YFEMKDRIVAAVDALHREARGWLLSSRKEEDAS 1075
>sp|Q8LHH9|SHL2_ORYSJ Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp.
japonica GN=SHL2 PE=2 SV=1
Length = 1218
Score = 394 bits (1013), Expect = e-108, Method: Compositional matrix adjust.
Identities = 241/700 (34%), Positives = 377/700 (53%), Gaps = 90/700 (12%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSP----- 322
V ++++TP++ Y PE+ SNRV+R Y + D FLR++F+DE + L + VL+
Sbjct: 436 VRRLVITPTRAYCLPPEVERSNRVLRHYHEVADRFLRVTFMDEGMQVLNNNVLNSFTAPI 495
Query: 323 --QISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTA 380
+ S +++T +Y+RV L G + +K+ LAFS++Q R+ + W FA + T
Sbjct: 496 VKDLMSNFFQQKTTVYKRVRMLLTEGFHMCGRKYSFLAFSSNQLRDKSAWFFAEDRKTTV 555
Query: 381 ADIRERMGDFREIKNVTKYAARLGQSFASSREAL-----HVDSN--------------IG 421
IR+ MG F KNV K+AAR+GQ F+S+ + VD + IG
Sbjct: 556 EAIRKWMGRFTS-KNVAKHAARMGQCFSSTYATVTMRPDEVDESFDDVVHNEYIFSDGIG 614
Query: 422 KISAELAETVAKKCGYAIYTPSAFQIRYGGYK--------------VTLRNNMFKYKSES 467
KI+ +LA VA++ PSA+QIR+ G+K + LR +M K++S
Sbjct: 615 KITPDLALEVAERLQLTDNPPSAYQIRFAGFKGVIAVWQGHGDGTRLFLRPSMRKFESNH 674
Query: 468 TSLDILANSKYQREGVARLRL---------DNVFERKQREVVARLDAILTDSSKVQEALE 518
L++++ +K+Q + R + D++F + Q +++ L+ IL+D E L
Sbjct: 675 LVLEVVSWTKFQPGFLNRQIIILLSSLNVPDSIFWQMQETMLSNLNNILSDRDVAFEVLT 734
Query: 519 LMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCL 578
S A++ N +L+ G++P EP L M ++ L +L +ARIF+ G+ +MGCL
Sbjct: 735 -TSCADDGNTAALMLSAGFEPRTEPHLKAMLLAIRSAQLQDLLEKARIFVPKGRWLMGCL 793
Query: 579 DEKGTLEYGQ--------------------------------GLMVVAKKPCLHPGDMRV 606
DE G LE GQ G +V+AK PCLHPGD+R+
Sbjct: 794 DELGVLEQGQCFIRATVPSLNSYFVKHGSRFSSTDKNTEVILGTVVIAKNPCLHPGDVRI 853
Query: 607 LRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ--FQPTA 664
L AVDVP LHH+VDC++FP KGERPH NE SGSD DG++YFV WD IPP + + P
Sbjct: 854 LEAVDVPELHHLVDCLVFPQKGERPHANEASGSDLDGDLYFVTWDEKLIPPGKKSWNPMD 913
Query: 665 YTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKL 724
Y+P K L R V+ D+ ++F +++++LG ICNAHVV+A AM +C L +L
Sbjct: 914 YSPPEAKQLPRQVSQHDIIDFFLKNMISENLGRICNAHVVHADLSEYGAMDEKCIHLAEL 973
Query: 725 SSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTI 784
++ DF KTG A +P L+ K+YPDFM K+D Y+S+ I+G LYR + +
Sbjct: 974 AATAVDFPKTGKLAIMPPHLKPKVYPDFMGKEDGQSYKSEKILGRLYRSIQEASNGDVVS 1033
Query: 785 KSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRC 844
+ + YD D+EV G + ++ + YD +L L+ Y ++TEAE+++
Sbjct: 1034 QEVCTPNDLP-YDIDLEVPGASDFLAS--AWQCKCSYDAQLSALLSQYRVRTEAELVTGH 1090
Query: 845 IMEMAKSFDKKR-DL-EAISFSVRSLRKEARAWFNKKKND 882
I + K+ KK+ D+ + + + +LRKE ++ F +D
Sbjct: 1091 ITFLVKNSSKKQGDIKDRLKTAYSALRKEFKSTFESIASD 1130
>sp|Q9SG02|RDR6_ARATH RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana GN=RDR6 PE=1
SV=1
Length = 1196
Score = 389 bits (1000), Expect = e-107, Method: Compositional matrix adjust.
Identities = 244/705 (34%), Positives = 377/705 (53%), Gaps = 91/705 (12%)
Query: 268 VNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLS------ 321
+ ++++TP++ Y PE+ LSNRV+R Y + FLR++F+DE + + S VLS
Sbjct: 411 IRRLVITPTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPI 470
Query: 322 -PQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTA 380
++S++ ++T +++RV S L +G + +K+ LAFS +Q R+ + W FA +
Sbjct: 471 VKDLTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRV 530
Query: 381 ADIRERMGDFREIKNVTKYAARLGQSFASSREALHV-------------------DSNIG 421
+DI+ MG F++ KNV K AAR+G F+S+ + V IG
Sbjct: 531 SDIKTWMGKFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERNGYVFSDGIG 589
Query: 422 KISAELAETVAKKCGYAI-YTPSAFQIRYGGYK--------------VTLRNNMFKYKSE 466
I+ +LA+ V +K + Y+P A+QIRY G+K + LR++M K+ S+
Sbjct: 590 TITPDLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFSK 649
Query: 467 STSLDILANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEAL 517
T L+I + +++Q R+ + L + D +F Q ++ +L+ IL D+ E L
Sbjct: 650 HTILEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVL 709
Query: 518 ELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGC 577
S AE N +L+ G+KP EP L M + + L LR ++RIF+ +G+ +MGC
Sbjct: 710 T-ASCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGC 768
Query: 578 LDEKGTLEYGQ--------------------------------GLMVVAKKPCLHPGDMR 605
LDE G LE+GQ G + +AK PCLHPGD+R
Sbjct: 769 LDEAGILEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVR 828
Query: 606 VLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQ--FQPT 663
+L AVDVP LHHM DC++FP KG+RPHTNE SGSD DG++YFV WD IPP + +
Sbjct: 829 ILEAVDVPQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAM 888
Query: 664 AYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVK 723
Y A EK L R V +D+ ++FA + N+ LG ICNAHVV+A AM C L +
Sbjct: 889 HYDAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAE 948
Query: 724 LSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTT 783
L++ DF KTG ++P L+ K+YPDFM K+D Y+S I+G LYR V +
Sbjct: 949 LAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDAE 1008
Query: 784 IKS-FAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLS 842
S + + + YD +E+ GF+++ + + ++ YD +L L+ Y ++ E E+++
Sbjct: 1009 ASSEESTDPSAIPYDAVLEIPGFEDLIPE--AWGHKCLYDGQLIGLLGQYKVQKEEEIVT 1066
Query: 843 RCIMEMAKSFDKKRD--LEAISFSVRSLRKEARAWFNKKKNDSDS 885
I M K KK+ E + S SL+KE R F + D ++
Sbjct: 1067 GHIWSMPKYTSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHEN 1111
>sp|O14227|RDR1_SCHPO RNA-dependent RNA polymerase 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rdr1 PE=1 SV=1
Length = 1215
Score = 254 bits (648), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 191/696 (27%), Positives = 325/696 (46%), Gaps = 100/696 (14%)
Query: 266 IYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQIS 325
I++ K+ VTP+ + + NRV+R++ D + F+R+ DE Y +
Sbjct: 452 IHIKKLYVTPTTLRIVEDSLEAGNRVIRNFKDFANRFMRVQITDE----YYKQKIR---G 504
Query: 326 STNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRE 385
++G R ++Y R+ L GI +G++ +E LAF NSQ RE+ + FAS +L A IRE
Sbjct: 505 GSDGFRNEKLYSRIQQLLTYGIKVGNQIYEFLAFGNSQLREHGAYFFASGSDLNAKQIRE 564
Query: 386 RMGDFREIKNVTKYAARLGQSFASSRE--------ALHVD---------SNIGKISAELA 428
MGDF EI +V+KYAAR+GQ F++++E +L D +G S +
Sbjct: 565 WMGDFSEINSVSKYAARMGQCFSTTKEINRFCVDISLQDDIVRNNHCFTDGVGMASLSVI 624
Query: 429 ETVAKKCGYAIYTPSAFQIRYGGYKVTL------------------RNNMFKYKSESTSL 470
++ + PSAFQ R GGYK L R + K+KS ++L
Sbjct: 625 RRLSLEVKNHDMFPSAFQFRMGGYKGVLSLAPPTKLEYHQGNLVFPRRSQDKFKSFHSTL 684
Query: 471 DILANSKYQREGVARLRLDNVFERKQREVVARLDAILTDSSKVQEALE------LM---- 520
+++ S++ + ++L + E E L+ + SK+ E++ LM
Sbjct: 685 EVIKISRFSNAHL-NMQLITLLEGLGVEKTVFLELTRSQLSKMNESINSKQKSILMLRDN 743
Query: 521 -SSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLD 579
+T ++ + + G+ + F + ++ L ++ + ++ + G ++G D
Sbjct: 744 VDEYHSTLIIADFIQAGFLERDDAFTENLLNLYYEWVLRLIKEKQKVSVPKGAYLLGVAD 803
Query: 580 EKGTLE-----------------------YGQ------------GLMVVAKKPCLHPGDM 604
E GTL+ +G GL +VA+ P LHPGD+
Sbjct: 804 ETGTLKGHYDDAVLSVPEIFIQITDTSTSFGSYSTGKLKTRVIVGLCIVARNPSLHPGDV 863
Query: 605 RVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTA 664
RV +AV L H+ + ++FP G+R CSG D DG+ Y V WD +P + P
Sbjct: 864 RVCKAVRCDELMHLKNVIVFPTTGDRSIPAMCSGGDLDGDEYTVIWDQRLLPKIVNYPPL 923
Query: 665 YTPAPEK---ILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAY---SEPDKAMSNRC 718
+P+K L I+ V+E+F +YI DSLG+I NA +A+ + P+ N C
Sbjct: 924 LESSPKKSIDFLEGKPLIDSVKEFFVNYIKYDSLGLISNAWKAWAHDHDNNPEGIFGNVC 983
Query: 719 PDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIA 778
+L ++ S DF+K+GVA + ++ K YPDFM+K + S+ VG ++R
Sbjct: 984 LELAEMHSKAVDFAKSGVACKMQAKYHPKRYPDFMQKTKTRSFRSETAVGKIFRYAARFQ 1043
Query: 779 PSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEA 838
+ ++ YD M++ FK + + + YDN L ++M + I TE
Sbjct: 1044 RESGRPATY-NPIMNTVYDPCMKLPRFKTEYLNV-AEEVKKHYDNDLRSIMARFDISTEY 1101
Query: 839 EMLSRCIM---EMAKSFDKKRDLEAISFSVRSLRKE 871
E+ + I+ ++AK+ ++ E +SF L+K+
Sbjct: 1102 EVYTAFILFKDDLAKTVNEYGLREEVSFQFDLLKKK 1137
>sp|Q5QMN4|RDR4_ORYSJ Probable RNA-dependent RNA polymerase 4 OS=Oryza sativa subsp.
japonica GN=RDR4 PE=2 SV=2
Length = 1183
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 121/283 (42%), Gaps = 48/283 (16%)
Query: 541 AEPFLSMMP--QTFHASNLLELRTRARIFIQNGQA-------MMGCLDEKG--------- 582
A LS +P +++ S L L R I+NG+ +MG D G
Sbjct: 754 ARMILSGIPLEESYLQSRLDFLSLLERKGIKNGKIPIDDCYYLMGTADPTGKLGPNEVCV 813
Query: 583 TLEYGQ--GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVD----CVLFPAKGERPHTNEC 636
L+YGQ G ++V K P LHPGD+ VL+A + +V +LFP G+R +E
Sbjct: 814 ILDYGQVSGDVLVYKYPGLHPGDIHVLKATYSSDIEKVVGNSKHAILFPTTGQRSLADEM 873
Query: 637 SGSDQDGEIYFVCWDHDRIPPLQFQPT-----AYTP------APEKI----LARDVTIED 681
+ SD DG+IY+V + + F+P+ A TP PE L R + E
Sbjct: 874 ANSDFDGDIYWVSLNPKLLE--HFKPSKPWVPAITPNGTKQKGPEDFNESELERVLFHEF 931
Query: 682 VEEYFADYIVNDSLG----IICNAHVVYAYSEPDKAM-SNRCPDLVKLSSIVGDFSKTGV 736
++ FA + + + + + E +K + + LV L + D K G
Sbjct: 932 LKTRFAPSYARATAATNWLVYMDRLLTVSLDESEKKLIEKKMLKLVDLYYLALDAPKMGN 991
Query: 737 AATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAP 779
IP L VK YP FM++ Y S I+G +Y + P
Sbjct: 992 KVNIPRDLMVKQYPHFMDRSPS--YHSSSILGKIYDKAGDPKP 1032
>sp|O82188|RDR5_ARATH Probable RNA-dependent RNA polymerase 5 OS=Arabidopsis thaliana
GN=RDR5 PE=2 SV=2
Length = 977
Score = 63.5 bits (153), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 106/237 (44%), Gaps = 45/237 (18%)
Query: 574 MMGCLDEKGTL---------EYGQ--GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVD-- 620
+MG +D G L E GQ G ++V + P LH GD+ +L+A V AL V
Sbjct: 601 LMGTVDPTGALKEDEVCVILESGQISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNS 660
Query: 621 --CVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPL--QFQPT----AYTP----- 667
V FP KG R +E +G D DG++YF+ R P L F+P+ + TP
Sbjct: 661 KFAVFFPQKGPRSLGDEIAGGDFDGDMYFI----SRNPELLENFKPSEPWVSLTPPSKSN 716
Query: 668 --------APEKILARDVTIEDVEEYFADYIVN---DSLGIICNAHVVYA--YSEPDKAM 714
+PE++ + + A ++ DS I + ++ +E M
Sbjct: 717 SGRAPSQLSPEELEEELFEMFLTAGFHASNVIGIAADSWLTIMDRFLILGDDRAEEKAEM 776
Query: 715 SNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLY 771
+ +L+ + D K G +P++L+ I+P +ME+ K ++S I+G ++
Sbjct: 777 KKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHYMERDKK--FQSTSILGLIF 831
>sp|O82190|RDR3_ARATH Probable RNA-dependent RNA polymerase 3 OS=Arabidopsis thaliana
GN=RDR3 PE=3 SV=2
Length = 992
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 106/251 (42%), Gaps = 43/251 (17%)
Query: 564 ARIFIQNGQAMMGCLDEKGTLEYGQ-----------GLMVVAKKPCLHPGDMRVLRAVDV 612
R I +MG +D G L+ + G ++V + P LH GD+ VL+A V
Sbjct: 602 GRFPIDESYYIMGTVDPTGELKENEICVILHSGQISGDVLVYRNPGLHFGDIHVLKATYV 661
Query: 613 PALHHMVD----CVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPL--QFQPT--- 663
AL V V FP KG R +E +G D DG++YF+ R P L F+P+
Sbjct: 662 KALEDYVGNAKFAVFFPQKGPRSLGDEIAGGDFDGDMYFIS----RNPKLLEHFKPSEPW 717
Query: 664 AYTPAPEKILA-----RDVTIEDVEEYF-----ADYIVNDSLGII--CNAHVVYAY---- 707
+ P KI E EE F A + D +G+ C ++ +
Sbjct: 718 VSSSKPSKIYCGRKPSELSEEELEEELFKMFLKARFCKRDVIGMAADCWLGIMDPFLTLG 777
Query: 708 SEPDKAMSNRCPDLVKLSSI---VGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQ 764
E K R +++KL I D K G +P L +K +P +ME+ K + S
Sbjct: 778 DESAKEKYERKKNILKLIDIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRST 837
Query: 765 HIVGNLYREVN 775
I+G ++ V+
Sbjct: 838 SILGLIFDTVD 848
>sp|Q5QMN5|RDR3_ORYSJ Probable RNA-dependent RNA polymerase 3 OS=Oryza sativa subsp.
japonica GN=RDR3 PE=2 SV=2
Length = 1153
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 106/247 (42%), Gaps = 44/247 (17%)
Query: 563 RARIFIQNGQAMMGCLDEKGTL---------EYGQ--GLMVVAKKPCLHPGDMRVLRAVD 611
+ +I I +M D GTL E GQ G ++V K P LH GD+ VL+A
Sbjct: 764 QGKIPIDECYYLMDTTDPTGTLRPNEVCVILENGQFSGDVLVYKHPGLHFGDIHVLKATY 823
Query: 612 VPALH-----HMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPL--QFQPT- 663
+ L + +LFP G R +E + SD DG+IY+V + P L F+P+
Sbjct: 824 IRDLEKEYVGYAKYAILFPISGPRSLADEMANSDFDGDIYWV----SKNPKLLEHFKPSE 879
Query: 664 AYTPAPEKILARDVTIEDVEE------YFADYIVND-----SLGIICNAHVVY------- 705
+ A + + +D E F +++ +LG ++ + Y
Sbjct: 880 PWVQAIKPKKTKQKKPQDCNESKLERLLFHEFLKTRFTPSFALGTAADSWLAYMDRLLTD 939
Query: 706 AYSEPDKAM-SNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQ 764
+ E +K + + LV L + D KTG IPS L VK YP FM + Y S
Sbjct: 940 SLDEIEKKLIEEKMLKLVDLYYLALDAPKTGNKVNIPSDLMVKQYPHFMGRSFS--YHSS 997
Query: 765 HIVGNLY 771
I+G +Y
Sbjct: 998 SILGQIY 1004
>sp|O82189|RDR4_ARATH Probable RNA-dependent RNA polymerase 4 OS=Arabidopsis thaliana
GN=RDR4 PE=3 SV=2
Length = 927
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 74/293 (25%), Positives = 129/293 (44%), Gaps = 56/293 (19%)
Query: 539 PDAEPFLSMMPQTFHASNLLELRT----RARIFIQNGQAMMGCLDEKGTLEYGQ--GL-- 590
P EP+L + S LL+L ++ I +MG +D G L+ + GL
Sbjct: 571 PLDEPYLK-----HYLSKLLKLEKDDLKAGKLPIDESYYLMGTVDPTGELKEDEVSGLAK 625
Query: 591 ---MVVAKKPCLHPGDMRVLRAVDVPALHHMVD----CVLFPAKGERPHTNECSGSDQDG 643
++V + P LH GD+ +L+A V +L V V FP KG R +E +G D DG
Sbjct: 626 SQDVLVYRNPGLHFGDIHILKATYVKSLEQYVGNSKYGVFFPQKGPRSLGDEIAGGDFDG 685
Query: 644 EIYFVCWDHDRIPPL--QFQPT----AYTPAPEKILAR---DVTIEDVEEYFADYIVNDS 694
++YF+ R P L ++P+ + +P + R +++ E +EE +
Sbjct: 686 DMYFIS----RNPKLLEHYKPSEPWVSSSPRSKIYTGRQPSELSPEQLEEELFKIFLKTG 741
Query: 695 LGIICNAHVVYAYSEPDKAMSNRCPDL---------------VKLSSI---VGDFSKTGV 736
+ V+ ++ A+ +R L +KL+ I D KTG
Sbjct: 742 F---SPSSVIGQAADSWLAIMDRFLTLGDENVKEKAEMKKKMLKLTDIYYDAIDAPKTGT 798
Query: 737 AATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAK 789
+P ++V ++P +ME+ +KT ++S I+G ++ V+ TT +K
Sbjct: 799 EVNLPLDVKVDLFPHYMER-NKT-FKSTSILGLIFDTVDFHNAEDTTPSGISK 849
>sp|B0Y224|AGALB_ASPFC Probable alpha-galactosidase B OS=Neosartorya fumigata (strain
CEA10 / CBS 144.89 / FGSC A1163) GN=aglB PE=3 SV=1
Length = 426
Score = 37.7 bits (86), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 55/137 (40%), Gaps = 21/137 (15%)
Query: 669 PEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPD---KAMSNRCPDLVKLS 725
P + D+ + E+ DY+ D+ G+ N Y Y PD KA + CPD K
Sbjct: 110 PASLGYEDIDAQTFAEWGIDYLKYDNCGVPSNWTDTYTYCVPDPGSKATNGTCPD-NKNP 168
Query: 726 SIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKT-------WYESQ-----HIVGNLYRE 773
+ G +T + A R+R D + D+T W ++ + GN +R
Sbjct: 169 APAGYDWRTSLTAERYRRMR-----DALVSVDRTILYSLCEWGQANVNDWGNETGNSWRT 223
Query: 774 VNGIAPSTTTIKSFAKE 790
I PS I + A E
Sbjct: 224 TGDITPSWPRIAAIANE 240
>sp|Q4WE86|AGALB_ASPFU Probable alpha-galactosidase B OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=aglB PE=3
SV=2
Length = 447
Score = 37.7 bits (86), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 55/137 (40%), Gaps = 21/137 (15%)
Query: 669 PEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPD---KAMSNRCPDLVKLS 725
P + D+ + E+ DY+ D+ G+ N Y Y PD KA + CPD K
Sbjct: 131 PASLGYEDIDAQTFAEWGIDYLKYDNCGVPSNWTDTYTYCVPDPGSKATNGTCPD-NKNP 189
Query: 726 SIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKT-------WYESQ-----HIVGNLYRE 773
+ G +T + A R+R D + D+T W ++ + GN +R
Sbjct: 190 APAGYDWRTSLTAERYRRMR-----DALVSVDRTILYSLCEWGQANVNDWGNETGNSWRT 244
Query: 774 VNGIAPSTTTIKSFAKE 790
I PS I + A E
Sbjct: 245 TGDITPSWPRIAAIANE 261
>sp|Q68F79|LRC8E_XENTR Leucine-rich repeat-containing protein 8E OS=Xenopus tropicalis
GN=lrrc8e PE=2 SV=1
Length = 806
Score = 37.0 bits (84), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 28/137 (20%)
Query: 180 SRALIPKALKDFFHYKE-SLVQFTL--LPGFVFSCNS----DLNQDGKHALEMLFHLREC 232
++ L ALK KE LV+ L +P VFS + DL ++ H +E + L+ C
Sbjct: 580 TKLLTLNALKRLALVKELELVRCELERIPHAVFSLTNLQVLDLKENTLHTIEEIISLQHC 639
Query: 233 --------CYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKVYFCGP- 283
++ ++++ E RK L+ + NKILV PS+++ C
Sbjct: 640 RKLSVLRLWHNQIAYIPEHIRK-----------LKGLEELSLNRNKILVIPSQLFLCNKL 688
Query: 284 -EISLSNRVVRSYPDEI 299
+ LSN +R P EI
Sbjct: 689 RHLDLSNNEIRELPPEI 705
>sp|A1D0A3|AGALB_NEOFI Probable alpha-galactosidase B OS=Neosartorya fischeri (strain ATCC
1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=aglB PE=3
SV=1
Length = 447
Score = 37.0 bits (84), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 59/146 (40%), Gaps = 23/146 (15%)
Query: 669 PEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPD---KAMSNRCPDLVKLS 725
P + D+ + E+ DY+ D+ G+ N Y Y PD K+ + CPD K
Sbjct: 131 PASLGYEDIDAQTFAEWGIDYLKYDNCGVPSNWTDAYTYCVPDPGSKSTNGTCPD-NKNP 189
Query: 726 SIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKT-------WYESQ-----HIVGNLYRE 773
+ G +T + A R+R D + D+T W ++ + GN +R
Sbjct: 190 APAGYDWRTSLTAERYRRMR-----DALVSVDRTILYSLCNWGQADVNDWGNETGNSWRT 244
Query: 774 VNGIAPSTTTIKSFAKEGA--MQFYD 797
I PS I + A E + M + D
Sbjct: 245 TGDITPSWPRIAAIANENSFLMNYVD 270
>sp|P50532|SMC4_XENLA Structural maintenance of chromosomes protein 4 OS=Xenopus laevis
GN=smc4 PE=1 SV=1
Length = 1290
Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 69/152 (45%), Gaps = 15/152 (9%)
Query: 285 ISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLR 344
+ ++N +++ D++D V +++ + S + Q+S +R + E ++
Sbjct: 886 VDINNHKLKAQQDKLDK------VTKEIDECASAITKAQVSIKTADRNLKKSEEAVARTE 939
Query: 345 NGIVIGDKKFETLA--FSNSQERENTLWMFASRPELTAADIRERMGD-FREIKNVTKYAA 401
IV DK E L +E+ T+ E + +++E+ +EIK + +
Sbjct: 940 KEIVANDKSIEELTEDLKKLEEKATTVMNECKEAECSLPEVQEQHRSLLQEIKAIQE--- 996
Query: 402 RLGQSFASSREALHVDSNIGKISAELAETVAK 433
+ A +EAL++ NI +I + +AE +K
Sbjct: 997 ---KEHALQKEALNIRLNIEQIDSHIAEHQSK 1025
>sp|Q5K2P2|K1C15_PROAT Keratin, type I cytoskeletal 15 (Fragment) OS=Protopterus
aethiopicus GN=KRT15 PE=1 SV=1
Length = 441
Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 11/109 (10%)
Query: 776 GIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGN--LMDYYG 833
G+ +K E A+ DTDM++ G ++ + D K E D K + +
Sbjct: 194 GVEADINGLKRVLDELALAKADTDMQIEGLRD---ELDYLKKNHEEDMKAASSGIAGQVN 250
Query: 834 IKTEAEMLSRCIMEMAKSFDKKRDLEAISFSVRSLRKEARAWFNKKKND 882
++ +A + + E+ +RD EA+ + +R+EA W+N+K D
Sbjct: 251 VELDAAPGTNLLDELDAC---RRDHEAM---LDQMRREAERWYNEKAKD 293
>sp|Q811M1|RHG15_MOUSE Rho GTPase-activating protein 15 OS=Mus musculus GN=Arhgap15 PE=2
SV=1
Length = 481
Score = 33.1 bits (74), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 469 SLDILANSKYQREGVARLRLDNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNV 528
SL+IL NS +Q G ++R+ N + R+ + ILTD+ KV E + + +V
Sbjct: 18 SLEIL-NSAHQATGAVQMRIKNANSHQDRQSQTK-SMILTDAGKVTEPISRHRRNHSQHV 75
Query: 529 LKELL 533
LK+++
Sbjct: 76 LKDVI 80
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 322,941,946
Number of Sequences: 539616
Number of extensions: 13684707
Number of successful extensions: 32564
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 32493
Number of HSP's gapped (non-prelim): 39
length of query: 890
length of database: 191,569,459
effective HSP length: 127
effective length of query: 763
effective length of database: 123,038,227
effective search space: 93878167201
effective search space used: 93878167201
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)