Query 035741
Match_columns 890
No_of_seqs 369 out of 560
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 05:58:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035741.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035741hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0988 RNA-directed RNA polym 100.0 1E-161 2E-166 1424.4 49.5 858 2-877 10-1059(1145)
2 PF05183 RdRP: RNA dependent R 100.0 6E-114 1E-118 1012.1 17.4 486 276-778 1-574 (579)
3 PLN03134 glycine-rich RNA-bind 99.5 8.1E-14 1.8E-18 137.6 10.3 80 1-84 33-115 (144)
4 PLN03213 repressor of silencin 99.4 9.1E-13 2E-17 146.9 9.0 78 3-86 11-91 (759)
5 PLN03120 nucleic acid binding 99.4 2.1E-12 4.5E-17 137.7 10.7 77 1-82 3-79 (260)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.3 2.7E-12 5.9E-17 141.9 10.2 77 2-82 269-348 (352)
7 PF00076 RRM_1: RNA recognitio 99.3 3.7E-12 8E-17 107.5 8.5 68 5-76 1-70 (70)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.3 1.1E-11 2.3E-16 137.3 9.4 76 3-82 4-82 (352)
9 PF14259 RRM_6: RNA recognitio 99.2 2.4E-11 5.2E-16 103.9 8.3 68 5-76 1-70 (70)
10 TIGR01659 sex-lethal sex-letha 99.2 2.1E-11 4.5E-16 136.4 9.9 76 3-82 108-186 (346)
11 KOG0125 Ataxin 2-binding prote 99.2 5.6E-11 1.2E-15 128.2 7.7 78 3-84 97-175 (376)
12 TIGR01645 half-pint poly-U bin 99.1 1.8E-10 3.8E-15 136.3 11.2 74 2-79 107-183 (612)
13 smart00362 RRM_2 RNA recogniti 99.1 2.7E-10 5.8E-15 94.4 9.1 71 4-78 1-72 (72)
14 KOG0149 Predicted RNA-binding 99.1 9.1E-11 2E-15 122.2 7.4 83 3-91 13-98 (247)
15 PLN03121 nucleic acid binding 99.1 1.9E-10 4.1E-15 121.3 9.9 80 2-86 5-84 (243)
16 TIGR01645 half-pint poly-U bin 99.1 2E-10 4.4E-15 135.7 10.0 76 3-82 205-283 (612)
17 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 3.4E-10 7.4E-15 131.8 11.6 111 2-119 2-119 (481)
18 smart00360 RRM RNA recognition 99.1 4E-10 8.8E-15 92.9 8.0 68 7-78 1-71 (71)
19 TIGR01659 sex-lethal sex-letha 99.1 3.6E-10 7.9E-15 126.5 10.1 80 3-86 194-278 (346)
20 TIGR01628 PABP-1234 polyadenyl 99.0 5.2E-10 1.1E-14 132.2 10.2 79 2-84 285-365 (562)
21 TIGR01622 SF-CC1 splicing fact 99.0 8.6E-10 1.9E-14 126.7 9.8 75 2-81 89-166 (457)
22 TIGR01642 U2AF_lg U2 snRNP aux 99.0 1E-09 2.2E-14 127.7 9.9 78 3-84 296-376 (509)
23 COG0724 RNA-binding proteins ( 99.0 1.5E-09 3.2E-14 111.2 9.6 76 3-82 116-194 (306)
24 cd00590 RRM RRM (RNA recogniti 99.0 3E-09 6.5E-14 88.6 9.6 71 4-78 1-73 (74)
25 TIGR01628 PABP-1234 polyadenyl 99.0 1.7E-09 3.6E-14 128.0 9.9 76 4-83 2-80 (562)
26 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.0 2.2E-09 4.7E-14 125.1 10.7 79 2-86 275-354 (481)
27 TIGR01622 SF-CC1 splicing fact 99.0 1.8E-09 3.9E-14 124.1 9.7 77 3-83 187-266 (457)
28 TIGR01648 hnRNP-R-Q heterogene 98.9 1.5E-09 3.3E-14 128.1 9.1 73 3-79 59-134 (578)
29 KOG0108 mRNA cleavage and poly 98.9 1.4E-09 3E-14 124.3 7.9 78 3-84 19-99 (435)
30 KOG0107 Alternative splicing f 98.9 4.5E-09 9.7E-14 105.5 7.3 74 1-80 9-82 (195)
31 TIGR01648 hnRNP-R-Q heterogene 98.8 8.1E-09 1.7E-13 122.1 9.8 74 3-83 234-307 (578)
32 smart00361 RRM_1 RNA recogniti 98.8 1.7E-08 3.7E-13 87.6 7.3 59 16-78 2-70 (70)
33 KOG0122 Translation initiation 98.7 3.5E-08 7.5E-13 103.6 8.5 78 2-83 189-269 (270)
34 KOG4207 Predicted splicing fac 98.7 1.7E-08 3.7E-13 103.5 6.0 78 3-84 14-94 (256)
35 KOG0145 RNA-binding protein EL 98.7 3.4E-08 7.4E-13 104.1 8.3 72 4-79 280-354 (360)
36 TIGR01642 U2AF_lg U2 snRNP aux 98.7 3.1E-08 6.6E-13 115.4 8.9 77 2-83 175-260 (509)
37 KOG0131 Splicing factor 3b, su 98.7 2.7E-08 5.8E-13 100.6 6.8 93 2-107 9-104 (203)
38 KOG0111 Cyclophilin-type pepti 98.7 9.6E-09 2.1E-13 106.0 3.3 78 3-84 11-91 (298)
39 KOG0145 RNA-binding protein EL 98.6 7.1E-08 1.5E-12 101.7 7.5 86 5-104 44-132 (360)
40 KOG0105 Alternative splicing f 98.6 5.9E-08 1.3E-12 98.1 6.3 76 3-82 7-82 (241)
41 PF13893 RRM_5: RNA recognitio 98.5 3.1E-07 6.8E-12 75.8 7.4 55 19-79 1-55 (56)
42 KOG0117 Heterogeneous nuclear 98.5 2.6E-07 5.7E-12 103.6 8.7 75 2-79 83-160 (506)
43 KOG0127 Nucleolar protein fibr 98.5 2.7E-07 5.9E-12 105.4 8.3 77 2-81 292-376 (678)
44 KOG0148 Apoptosis-promoting RN 98.5 1.9E-07 4.1E-12 99.3 6.5 152 5-226 65-220 (321)
45 KOG0114 Predicted RNA-binding 98.5 5E-07 1.1E-11 84.1 8.3 72 4-79 20-91 (124)
46 KOG0123 Polyadenylate-binding 98.4 4.6E-07 9.9E-12 102.6 8.3 77 5-86 79-156 (369)
47 KOG0127 Nucleolar protein fibr 98.4 3.6E-07 7.7E-12 104.5 6.8 79 2-84 5-86 (678)
48 KOG0126 Predicted RNA-binding 98.4 3.8E-08 8.1E-13 99.4 -1.2 77 4-84 37-116 (219)
49 KOG0113 U1 small nuclear ribon 98.4 9.9E-07 2.1E-11 95.0 9.0 87 3-97 102-192 (335)
50 KOG0109 RNA-binding protein LA 98.4 3.9E-07 8.4E-12 97.7 5.7 75 1-84 1-75 (346)
51 KOG0121 Nuclear cap-binding pr 98.4 7E-07 1.5E-11 86.0 6.8 74 2-79 36-112 (153)
52 KOG0148 Apoptosis-promoting RN 98.3 1E-06 2.3E-11 93.7 7.3 72 3-81 165-236 (321)
53 KOG4212 RNA-binding protein hn 98.3 1.9E-06 4.2E-11 96.3 8.5 76 4-82 46-123 (608)
54 KOG0144 RNA-binding protein CU 98.3 1.6E-06 3.5E-11 97.1 7.8 93 3-107 35-132 (510)
55 KOG0124 Polypyrimidine tract-b 98.2 1E-06 2.2E-11 96.6 4.4 73 2-78 113-188 (544)
56 KOG0110 RNA-binding protein (R 98.2 2.8E-06 6E-11 100.1 7.7 73 5-81 518-596 (725)
57 KOG0117 Heterogeneous nuclear 98.1 4.9E-06 1.1E-10 93.7 7.5 73 3-84 260-332 (506)
58 KOG4205 RNA-binding protein mu 98.1 2.9E-06 6.3E-11 93.8 5.6 80 2-86 97-179 (311)
59 KOG0130 RNA-binding protein RB 98.1 4E-06 8.7E-11 81.5 5.7 77 4-84 74-153 (170)
60 KOG0147 Transcriptional coacti 98.1 2.7E-06 5.8E-11 97.8 5.1 78 5-86 281-361 (549)
61 KOG4205 RNA-binding protein mu 98.1 2.3E-06 5.1E-11 94.5 4.3 80 2-86 6-88 (311)
62 KOG0146 RNA-binding protein ET 98.1 5.2E-06 1.1E-10 88.2 5.8 78 2-83 285-365 (371)
63 KOG4208 Nucleolar RNA-binding 98.0 1.7E-05 3.6E-10 82.1 7.7 76 5-83 52-130 (214)
64 KOG4661 Hsp27-ERE-TATA-binding 98.0 1.6E-05 3.4E-10 91.3 7.7 80 2-85 405-487 (940)
65 KOG4206 Spliceosomal protein s 97.9 2.7E-05 5.8E-10 81.6 7.7 81 4-89 11-97 (221)
66 KOG0144 RNA-binding protein CU 97.9 1.2E-05 2.5E-10 90.4 5.1 79 3-84 125-207 (510)
67 KOG0123 Polyadenylate-binding 97.9 1.3E-05 2.9E-10 90.9 5.7 80 3-86 271-352 (369)
68 KOG4211 Splicing factor hnRNP- 97.9 3.3E-05 7.1E-10 88.2 8.3 77 3-85 11-88 (510)
69 KOG0109 RNA-binding protein LA 97.9 1.4E-05 3.1E-10 86.0 5.0 76 2-86 78-153 (346)
70 KOG0153 Predicted RNA-binding 97.9 2.5E-05 5.5E-10 85.9 6.8 75 2-82 228-302 (377)
71 KOG0124 Polypyrimidine tract-b 97.8 2.7E-05 5.8E-10 85.7 6.7 74 3-80 211-287 (544)
72 KOG0132 RNA polymerase II C-te 97.8 3.3E-05 7.1E-10 91.8 7.6 70 2-78 421-490 (894)
73 KOG0116 RasGAP SH3 binding pro 97.7 4.5E-05 9.7E-10 87.5 7.0 75 2-82 288-366 (419)
74 KOG4454 RNA binding protein (R 97.7 1.8E-05 4E-10 82.3 2.0 114 1-131 8-123 (267)
75 KOG0533 RRM motif-containing p 97.5 0.00024 5.3E-09 76.2 8.1 78 3-84 84-163 (243)
76 KOG0110 RNA-binding protein (R 97.5 9.3E-05 2E-09 87.6 5.1 79 3-85 614-695 (725)
77 KOG4212 RNA-binding protein hn 97.4 0.00033 7.2E-09 78.9 6.8 70 3-79 537-607 (608)
78 KOG0106 Alternative splicing f 97.3 0.00022 4.7E-09 75.2 3.9 70 2-80 1-70 (216)
79 KOG0131 Splicing factor 3b, su 97.2 0.0005 1.1E-08 70.2 5.3 78 2-83 96-177 (203)
80 KOG4209 Splicing factor RNPS1, 97.1 0.00049 1.1E-08 73.6 5.1 79 2-86 101-182 (231)
81 KOG4211 Splicing factor hnRNP- 96.9 0.0016 3.6E-08 74.8 6.4 74 4-82 105-181 (510)
82 KOG0146 RNA-binding protein ET 96.9 0.0015 3.3E-08 70.0 5.7 79 3-84 20-102 (371)
83 KOG0151 Predicted splicing reg 96.8 0.0023 5.1E-08 76.0 6.6 77 1-81 173-255 (877)
84 KOG1457 RNA binding protein (c 96.7 0.0057 1.2E-07 64.4 8.0 76 3-82 35-117 (284)
85 KOG4660 Protein Mei2, essentia 96.5 0.0022 4.7E-08 74.8 4.5 68 3-76 76-143 (549)
86 KOG0129 Predicted RNA-binding 96.1 0.013 2.8E-07 68.1 7.6 66 2-79 370-439 (520)
87 KOG0415 Predicted peptidyl pro 96.1 0.0089 1.9E-07 66.4 5.8 71 4-78 241-314 (479)
88 KOG0120 Splicing factor U2AF, 96.0 0.0052 1.1E-07 72.0 3.8 77 4-84 291-370 (500)
89 KOG1548 Transcription elongati 95.8 0.025 5.4E-07 63.0 7.9 77 3-83 135-221 (382)
90 KOG0147 Transcriptional coacti 95.7 0.0054 1.2E-07 71.4 2.5 70 5-79 182-254 (549)
91 KOG4210 Nuclear localization s 95.7 0.0065 1.4E-07 67.1 2.7 75 3-82 185-263 (285)
92 PF04059 RRM_2: RNA recognitio 95.5 0.066 1.4E-06 50.2 8.3 75 3-78 2-79 (97)
93 KOG1365 RNA-binding protein Fu 95.4 0.018 3.9E-07 64.7 4.8 77 5-82 283-361 (508)
94 KOG1365 RNA-binding protein Fu 95.3 0.022 4.8E-07 64.0 5.2 71 5-77 164-237 (508)
95 KOG1190 Polypyrimidine tract-b 95.1 0.092 2E-06 59.7 9.4 77 4-86 299-376 (492)
96 KOG0226 RNA-binding proteins [ 94.6 0.037 8E-07 59.5 4.2 73 4-80 192-267 (290)
97 PF11608 Limkain-b1: Limkain b 94.3 0.18 3.8E-06 46.3 7.5 69 4-80 4-74 (90)
98 KOG1995 Conserved Zn-finger pr 94.1 0.055 1.2E-06 60.7 4.6 78 3-84 67-155 (351)
99 PF08777 RRM_3: RNA binding mo 94.0 0.2 4.4E-06 47.5 7.7 69 3-77 2-74 (105)
100 KOG0106 Alternative splicing f 94.0 0.03 6.5E-07 59.4 2.3 64 5-77 102-165 (216)
101 KOG4206 Spliceosomal protein s 92.5 0.34 7.4E-06 51.5 7.1 74 3-81 147-220 (221)
102 KOG1190 Polypyrimidine tract-b 92.1 0.28 6.1E-06 55.9 6.3 77 2-82 414-490 (492)
103 PF14605 Nup35_RRM_2: Nup53/35 90.1 0.76 1.6E-05 38.3 5.5 53 2-61 1-53 (53)
104 KOG2202 U2 snRNP splicing fact 90.1 0.17 3.6E-06 54.7 2.0 59 17-79 83-144 (260)
105 KOG4307 RNA binding protein RB 89.8 0.53 1.2E-05 56.7 6.0 70 1-77 1-71 (944)
106 KOG1548 Transcription elongati 89.4 0.89 1.9E-05 51.1 7.0 58 17-79 291-348 (382)
107 KOG4849 mRNA cleavage factor I 89.2 0.28 6E-06 54.9 3.0 73 5-79 83-158 (498)
108 KOG1457 RNA binding protein (c 88.8 0.5 1.1E-05 50.3 4.3 59 3-65 211-269 (284)
109 PF05172 Nup35_RRM: Nup53/35/4 88.3 1.4 3.1E-05 41.6 6.7 67 4-76 8-84 (100)
110 KOG3152 TBP-binding protein, a 87.8 0.38 8.3E-06 52.0 2.8 66 5-74 77-157 (278)
111 KOG0128 RNA-binding protein SA 87.2 0.28 6.1E-06 60.2 1.6 75 4-82 738-814 (881)
112 KOG4307 RNA binding protein RB 86.4 1 2.3E-05 54.4 5.5 71 4-78 869-942 (944)
113 KOG1855 Predicted RNA-binding 85.7 0.69 1.5E-05 53.2 3.5 69 2-73 231-316 (484)
114 COG5175 MOT2 Transcriptional r 83.6 2.6 5.6E-05 47.3 6.7 70 5-80 117-200 (480)
115 KOG0120 Splicing factor U2AF, 83.3 2.1 4.6E-05 50.8 6.2 55 28-83 432-492 (500)
116 KOG0128 RNA-binding protein SA 80.4 0.22 4.8E-06 61.1 -3.1 71 4-78 669-742 (881)
117 KOG1456 Heterogeneous nuclear 80.1 4.3 9.4E-05 46.2 6.9 67 2-72 406-474 (494)
118 KOG0115 RNA-binding protein p5 79.9 2 4.3E-05 46.8 4.1 62 1-65 30-93 (275)
119 KOG1996 mRNA splicing factor [ 79.3 3.9 8.4E-05 45.3 6.1 59 16-78 300-362 (378)
120 PF08952 DUF1866: Domain of un 79.0 4.7 0.0001 40.7 6.1 58 18-85 52-109 (146)
121 KOG0105 Alternative splicing f 78.7 8.7 0.00019 40.2 8.0 73 4-83 117-192 (241)
122 PF03880 DbpA: DbpA RNA bindin 78.6 6.8 0.00015 34.6 6.4 61 13-80 12-74 (74)
123 KOG4676 Splicing factor, argin 77.2 2.5 5.5E-05 48.3 4.0 80 4-88 9-94 (479)
124 KOG0129 Predicted RNA-binding 75.8 7.2 0.00016 46.2 7.3 70 2-79 259-339 (520)
125 KOG2253 U1 snRNP complex, subu 71.5 2.5 5.4E-05 51.2 2.3 69 1-79 39-107 (668)
126 PF00623 RNA_pol_Rpb1_2: RNA p 71.3 5 0.00011 41.2 4.2 49 589-649 98-149 (166)
127 KOG2193 IGF-II mRNA-binding pr 70.0 4.7 0.0001 46.5 4.0 68 3-78 2-71 (584)
128 KOG2314 Translation initiation 69.6 7 0.00015 46.7 5.3 73 5-80 61-141 (698)
129 PF10309 DUF2414: Protein of u 63.6 28 0.0006 30.4 6.5 55 4-63 7-61 (62)
130 smart00663 RPOLA_N RNA polymer 60.7 9.6 0.00021 42.7 4.2 48 590-649 204-253 (295)
131 KOG4210 Nuclear localization s 59.8 6.8 0.00015 43.6 2.8 89 3-97 89-180 (285)
132 KOG1456 Heterogeneous nuclear 52.2 39 0.00085 38.9 7.0 75 5-85 290-365 (494)
133 KOG2416 Acinus (induces apopto 50.0 15 0.00033 44.2 3.7 78 2-85 444-524 (718)
134 PF07576 BRAP2: BRCA1-associat 38.0 1.7E+02 0.0036 28.3 8.1 64 5-71 16-80 (110)
135 KOG0112 Large RNA-binding prot 37.4 9.8 0.00021 47.8 -0.4 59 3-64 373-433 (975)
136 PF04847 Calcipressin: Calcipr 35.6 67 0.0015 33.7 5.4 60 15-80 8-68 (184)
137 cd01213 tensin Tensin Phosphot 31.8 2E+02 0.0043 29.0 7.7 86 270-388 47-134 (138)
138 cd00292 EF1B Elongation factor 28.2 1.6E+02 0.0035 27.4 6.0 56 331-389 18-73 (88)
139 PRK02625 rpoC1 DNA-directed RN 27.0 65 0.0014 39.7 4.1 47 590-648 428-476 (627)
140 CHL00018 rpoC1 RNA polymerase 26.9 59 0.0013 40.3 3.7 48 589-648 448-497 (663)
141 TIGR02387 rpoC1_cyan DNA-direc 26.2 58 0.0013 40.0 3.4 48 589-648 420-469 (619)
142 TIGR00489 aEF-1_beta translati 26.0 2E+02 0.0043 26.8 6.1 60 331-393 18-77 (88)
143 PRK00435 ef1B elongation facto 25.2 2.1E+02 0.0045 26.7 6.1 60 331-393 18-77 (88)
144 PF11303 DUF3105: Protein of u 23.6 60 0.0013 32.2 2.5 71 589-692 50-120 (130)
145 PF01316 Arg_repressor: Argini 22.7 4.3E+02 0.0094 23.6 7.4 58 515-582 12-69 (70)
146 PF15023 DUF4523: Protein of u 21.7 1.8E+02 0.004 29.7 5.3 56 3-65 87-146 (166)
No 1
>KOG0988 consensus RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference [RNA processing and modification]
Probab=100.00 E-value=9.9e-162 Score=1424.44 Aligned_cols=858 Identities=32% Similarity=0.479 Sum_probs=728.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCce-eEE
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSF-LKA 77 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~-L~v 77 (890)
..++-++++|.+.++.++.+|.+..+|.++|+..++-+++ ..+-|+.++|++.+.--.++........|+... ++.
T Consensus 10 ~~~~~~~~f~e~~~~~~~~~f~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~l~~~~~~~~~a~v~f~~~~~~~~ 89 (1145)
T KOG0988|consen 10 VEEQDCNGFPESNSAVELGDFLELLIGAITVYLLKMNTTKPYRPNRVYHGSDFTSIALDCSGIETPLAKVYFKHNQGLNP 89 (1145)
T ss_pred eeeeeccCcccchhHHHhhhHHHHHhcchHHHHHhcCCCCCCCCccccccccccccccccccchhhHHHHhhccCCCCCc
Confidence 4678899999999999999999999999999999999998 388999999988765555333322235555555 888
Q ss_pred ecCCC--CCCCCCCCCccccccCCcEEEEeec---cccceeEEeecc---cCceeEeccCceeEEEEeeecCe-eeEEEe
Q 035741 78 SSAKR--RTPHFAKRTPHYKLGGDLKLNFGCQ---ISKDKFSVFWSQ---ENVSVKLCSDLRKFGFFLSYESV-DYKLEL 148 (890)
Q Consensus 78 ~ea~~--di~p~rp~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~ 148 (890)
.|+.. ++++ .+..+.+.+. .+++.++|. +..-.|..||+| +.|.|+..+.+|.+.++++.... |+.-++
T Consensus 90 ~e~~~~~~~l~-~~a~~~~~l~-~i~~~~~F~~~~~~t~~~~~~~~~~v~~~v~V~~~~~~~~~~~p~~~~~~~~v~f~~ 167 (1145)
T KOG0988|consen 90 WEVETSRRILS-SLAVIRESLN-QIVLEKVFDKPDGITKTFDCLESYKVNDQVTVRGSPVRRIVESPVVEYCKLCVPFEH 167 (1145)
T ss_pred cchhhhhhhcc-ccccchHHHh-hHHHhhccCcccceeeeecceEEEeecceEEEeccceeeeeecccccccccccchhh
Confidence 88877 8889 8666677777 777777664 445689999999 99999999999999999866544 777777
Q ss_pred cchhhhh---hhccCCC------CC-----------------------------------------------ccccccee
Q 035741 149 SNESIWQ---IELHRPS------GH-----------------------------------------------SVSIGQSS 172 (890)
Q Consensus 149 ~~~~~~~---~~~~~~~------~~-----------------------------------------------~~~~~~~~ 172 (890)
++..+.+ +.++-|. .. ..+||+++
T Consensus 168 ~~~~~i~~~~~D~~~~s~~~~~~~~~~~~~G~~k~~~~~~~p~~~~~~~~~~Ef~k~~~~~~~~i~~~~~~~~~~v~~et 247 (1145)
T KOG0988|consen 168 SCRVLIETVSLDLDKPSIIRYPKSRRYLDNGGSKYFRFAFSPLLLALGDSELEFKKDFLADLLYIRTTDLRSRTGVGIET 247 (1145)
T ss_pred cchhheeeEEeccCcchhccCcchhhhhhcCccceeecccccHHHhhccceeeeecccccccceeeecceecccccccee
Confidence 7766553 2222221 00 55799999
Q ss_pred eEEEecCC--CCccchhhhhcccccccc-ceeEeecCCcccc-cchhh------------------------HHH-----
Q 035741 173 AICLELPS--RALIPKALKDFFHYKESL-VQFTLLPGFVFSC-NSDLN------------------------QDG----- 219 (890)
Q Consensus 173 ~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~------------------------~~~----- 219 (890)
+.|.|++. |..+|.+..+ ..+.|.. ..+....|..|++ +.+++ |.|
T Consensus 248 a~~~eI~~~i~~~lP~~r~~-~~~~~~~~~s~~ir~~~~~~~~~~~~~~l~~~~~~git~~~e~l~~r~slv~dq~~~~~ 326 (1145)
T KOG0988|consen 248 ASCDEIRVPIWKDLPYNRYN-GSTAEEFRLSVWIRLGSKYDVSSAQLVPLNDERDFGITHLYECLVSRGSLVKDQVLLEE 326 (1145)
T ss_pred eccceecchhhccCCccccc-ccchhhhhhhhheecccccccccceeeeccccccccceeehhhhhcccchhhhhHHhhh
Confidence 99999999 5666665543 1122222 2345556665542 22222 222
Q ss_pred ---------------------HHHHHHHHhcccccccchhHHHHHHhhhhcCCCCCCCCccccCCCcEEEEEEEEccCce
Q 035741 220 ---------------------KHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKV 278 (890)
Q Consensus 220 ---------------------~~~le~~~~~~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~v~vTPtri 278 (890)
.+.||+|.++..+||||+++.+..+++..+|..+ .+..++++|++.|+||+|||||+
T Consensus 327 ~~~~~f~~l~~~~~~~d~~v~~a~LekL~~~~~~cfd~~~~~k~i~~~~~~ng~~--~~~~~~~~g~~~vrk~v~TPtrv 404 (1145)
T KOG0988|consen 327 AHLLEFLGLLRHKVLGDDNVLEAKLEKLLKLSTKCFDPYCQYKKIAKLNPSNGKL--VTTKEIMEGLRRVRKVVFTPTRV 404 (1145)
T ss_pred hHHHHHHHHHhhhhccchhHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhcccCcc--ccchhhhhcceeEEEEEEcCcee
Confidence 7889999999999999999999988876666653 34567889999999999999999
Q ss_pred eecCCeecccCceeccCCCCCCcEEEEEEEcCCCCccCCcccCCCccCCCcchhhhHHHHHHHHhhcCeEecceEeEEEe
Q 035741 279 YFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLA 358 (890)
Q Consensus 279 ~l~~P~~e~sNRVlR~f~~~~drFLRV~F~DE~~~~l~~~~~~p~~~~~~~~~~~~i~~rv~~~L~~Gi~I~gR~y~FLa 358 (890)
|+.+||++++|||+|+|..+++|||||+|+||+++ +..+.+++ ..++.+|.||..+|++||.||+|.|+|||
T Consensus 405 ~~~~PE~~~gNRVlR~f~~~~t~~lRvtF~De~~~-~~ir~~S~-------~~~t~l~~rv~~~L~~Gi~v~~r~y~FL~ 476 (1145)
T KOG0988|consen 405 YLLAPEVEMGNRVLRKFDKDSTRFLRVTFRDEDNK-LKIRTLST-------GSRTKLDMRVNSYLTDGISVANRRYEFLA 476 (1145)
T ss_pred EecCchhhhcchhheeccccCceEEEEEEEccccc-cccccCCc-------chhhHHHHHHHHHHhcccEEccceeEEEE
Confidence 99999999999999999999999999999999986 44333321 12689999999999999999999999999
Q ss_pred eccCccccCeEEEEecCCCCCHHHHHHHhcCccCCCCHHHHHHHhccccccccCceec-c--------------------
Q 035741 359 FSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHV-D-------------------- 417 (890)
Q Consensus 359 ~SnSqLRe~s~wFfa~~~~~t~~~Ir~wmG~F~~i~~vaK~aARlgq~FSsT~~tv~v-~-------------------- 417 (890)
|||||||+||+||++.....++++||.|||+|++|.|++|||||||||||+|++|..+ +
T Consensus 477 ~s~sQlRdngy~m~~~s~~~~i~~iR~wmG~F~~i~nv~K~aARmGqCFs~Sr~T~~~~~~~~~~~~~DI~~g~~g~~y~ 556 (1145)
T KOG0988|consen 477 FSNSQLRDNGYFMARFSDKTKIEDIREWMGDFRDIDNVPKLAARMGQCFSQSRGTGYVLERLDRMCPPDIEGGKRGNNYC 556 (1145)
T ss_pred ecccccccCceEEeecCCCccHHHHHHHhcchhhccCHHHHHhhcCcceeccccccccccccccccCCcccccccCCcee
Confidence 9999999999888887777999999999999999999999999999999999999655 1
Q ss_pred --cceeeccHHHHHHHHHHcCCCCCCCceEEEeecCee--EEeC----------CCccCCCCCCCceeEeecCCcccccc
Q 035741 418 --SNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK--VTLR----------NNMFKYKSESTSLDILANSKYQREGV 483 (890)
Q Consensus 418 --~GvG~IS~~lA~~I~~~l~l~~~~PSAfQiR~gG~K--I~lR----------pSm~KF~s~~~~LeIv~~S~~~p~~L 483 (890)
+|||+||.++|++|++++++...+||||||||||+| |.++ .||.||.|.+..++|+.|++|+||+|
T Consensus 557 FSDGvG~iS~~~a~~vsq~~~~~~~vPsaFQiR~~G~KGVvav~Ps~~~~~~~~~~~~~s~S~n~~~~v~~~~~f~~~~l 636 (1145)
T KOG0988|consen 557 FSDGVGMISLQFAREVSQKRKFGKAVPSAFQIRYGGYKGVVAVDPSMDKVLKLRDSMNKSQSFNSLLEVTPSSKFQPAFL 636 (1145)
T ss_pred ecCCcccccHHHHHHHHHHHcccccCChheeeeccCCcceEEeCccHhhhhhhhhhhhhhhhhcceeeeeeccCCccccc
Confidence 199999999999999999998789999999999999 5554 55566778889999999999999999
Q ss_pred cc--------c-CChHHHHHHHHHHHHHH--HHHhcCHHHHHHHHHhcCCCchHHHHHHHHHCCCCCCCchHHHHHHHHH
Q 035741 484 AR--------L-RLDNVFERKQREVVARL--DAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTF 552 (890)
Q Consensus 484 NR--------L-V~d~vF~~lq~~~l~~l--~~~l~d~~~a~~~L~~~~~~~~~~~l~~ll~~Gf~~~~ePfl~~lL~~~ 552 (890)
|| | |++++|+++|+..++.- ...+..+..+..+|......+..+++..++..++.++.|||+++||...
T Consensus 637 nr~lI~Lls~~gv~n~~F~~il~~vle~~r~~~n~~e~~~~~~~l~~~~~m~~en~a~~~l~~~~~~D~EPflr~mL~~~ 716 (1145)
T KOG0988|consen 637 NRQLITLLSYLGVLNKPFINILDQVLEKQRRITNRIEELLDRAALNYGEQMDDENIAAMILKGFPRIDSEPFLRSMLSSL 716 (1145)
T ss_pred cHHHHHHHHhcCccchHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhhhhccchHHHHHHHhcCCCCCcCHHHHHHHHHH
Confidence 99 2 99999999999999843 3344455556666654433445565555666666688899999999999
Q ss_pred HHHHHHHHhhhcceeecCcceEEEeecCCCCCCCCc---------------------ceEEEeeCCCCCCCceEEEEEec
Q 035741 553 HASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ---------------------GLMVVAKKPCLHPGDMRVLRAVD 611 (890)
Q Consensus 553 ~~~~L~~Lk~K~RI~Vp~s~~l~GV~DetG~L~~GE---------------------G~VlV~RnPclHPGDIr~v~AVd 611 (890)
+++.++.+|+|.|||||.||+||||+||||+||||| |+|||||||||||||||+++||+
T Consensus 717 ~k~~~~~~kek~ripv~~Gr~lmGvvDETG~L~ygQVfVq~t~~~~~~~~~~~~vitG~VlvtKNPcLhpGDVRVl~AV~ 796 (1145)
T KOG0988|consen 717 LKFTLQLLKEKIRIPVDLGRSLMGVVDETGILKYGQVFVQYTKTIRNSDSGRKEVITGKVLVTKNPCLHPGDVRVLKAVY 796 (1145)
T ss_pred HHHHHHHHHhcccccCcCCceeEeeeccccccccCeEEEEEcccccccccCCceEEEeeEEEecCCCCCCCceEEEEeec
Confidence 999999999999999999999999999999999999 99999999999999999999999
Q ss_pred CCCCCCCCCeEEcCCCCCCCCCCcccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHhhc
Q 035741 612 VPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIV 691 (890)
Q Consensus 612 ~P~L~hL~dVIVFp~kG~Rplps~lSGGDLDGD~Y~ViWD~~Lip~~~~~P~~Y~~~~~~~l~~~vt~~di~~ffv~ym~ 691 (890)
+|+|+||+|||||||||+||||+||||||||||+|||||||+|+|+.+++||+|++++++.+.+.++.++|.+||++||+
T Consensus 797 vp~L~h~~dvVvFPQkGpRphpdE~aGsDLDGDeYfViWDqkLL~~~~~epmd~~~~~sk~~~~~~~~~~m~effv~yL~ 876 (1145)
T KOG0988|consen 797 VPALEHMVDVVVFPQKGPRPHPDEMAGSDLDGDEYFVIWDQKLLPPRNEEPMDSSSEKSKILDGRVPLDEMSEFFVEYLK 876 (1145)
T ss_pred cHHHHhhcCEEEcCCCCCCCCccccccCCCCCceEEEEeChhhccCcCCCccccCccccccccCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHHHHhccCCCCCCCCchHHHHHHHhhccccCCCCCccccCccccCCCCCCCcCCCCCCccccCCccchhh
Q 035741 692 NDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLY 771 (890)
Q Consensus 692 ~d~LG~is~aHl~~aD~~~~G~~~~~Cl~LA~L~S~AVD~~KTG~~v~ip~~L~~~~~PdFMek~~~~~Y~S~kiLG~LY 771 (890)
+|+||+|+|||+++||+ .|++++.|+.||++||+||||||||..+.+|..++|++|||||++.++|+|.|++++||||
T Consensus 877 ~DslG~isnAhl~~aD~--~G~~~~~Cl~LA~k~~~AVDF~KsG~d~~~~~~ek~e~~PDfm~~~d~p~Y~S~~l~GkLf 954 (1145)
T KOG0988|consen 877 EDSLGLISNAHLANADV--YGLFSDVCLELAKKHSQAVDFPKSGADESMPEKEKPERYPDFMEKTDKPTYYSERLCGKLF 954 (1145)
T ss_pred HHHHHHHhhccccchhh--cchhhHHHHHHHHhhcccccccccCCcccccchhchhhcchhhhCCCCceeecchhhhHHH
Confidence 99999999999999999 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCccccccccccccccccCCCccccChhhhhchhhHHHHHHHHHHHHHHHHHhcCCCCcceEEEE--Eeeccc
Q 035741 772 REVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSR--CIMEMA 849 (890)
Q Consensus 772 r~v~~~~~~~~~~~~~~~~~~~~~~D~~l~v~g~~~yl~~~~A~~~k~~Y~~~l~~lm~~y~i~tE~Ev~sG--~i~~~~ 849 (890)
|+++.+............... ..||++++++||++|+ +.|+++++.|+.+|++||++|||.+|+||+|| .+..|+
T Consensus 955 R~~~aid~~~~~~e~~~~~~~-i~yD~~l~v~gFe~ym--e~a~~~~~~y~~qL~slm~~ygi~~E~eI~sG~~~~ddms 1031 (1145)
T KOG0988|consen 955 REAKAIDAPLKGSEERSEQVE-VEYDEDLEVDGFEHYM--ERAKKQVASYNGQLRSLMDFYGISTEGEIFSGILDQDDMS 1031 (1145)
T ss_pred HHHHhhcchhhcCccccCccc-ccCCcccCcCCcHHHH--HHHHHHHhhhhhHHHHHHHHhCccchhhhhccCccccchh
Confidence 988776543222222222233 6899999999999999 99999999999999999999999999999999 666788
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHhc
Q 035741 850 KSFDKKRDLEAISFSVRSLRKEARAWFN 877 (890)
Q Consensus 850 ~~~~~~~~~~~i~~~~~~l~~~~r~~f~ 877 (890)
++.+++..-+++...+..||+.|-+.|.
T Consensus 1032 ~~~t~~~~e~~~~~l~~~~r~~~~qef~ 1059 (1145)
T KOG0988|consen 1032 FYNTERMIELKLERLVLKLREKFFQEFG 1059 (1145)
T ss_pred hhcccccchhhhHHHHHHHHHHHHHHhh
Confidence 8888887777778888888877777773
No 2
>PF05183 RdRP: RNA dependent RNA polymerase; InterPro: IPR007855 This entry represents various eukaryotic RNA-dependent RNA polymerases (RDRP; 2.7.7.48 from EC), such as RCRP-1, RDRP-2 and RDRP-6. These enzymes are involved in the amplification of regulatory microRNAs during post-transcriptional gene silencing []; they are also required for transcriptional gene silencing. Double-stranded RNA has been shown to induce gene silencing in diverse eukaryotes and by a variety of pathways []. These enzymes also play a role in the RNA interference (RNAi) pathway, which is important for heterochromatin formation, accurate chromosome segregation, centromere cohesion and telomere function during mitosis and meiosis. RDRP enzymes are highly conserved in most eukaryotes, but are missing in archaea and bacteria. The core catalytic domain of RDRP enzymes is structurally similar to the beta' subunit of DNA-dependent RNA polymerases (DDRP), however the other domains of DDRP show no similarity to those of RDRP.; GO: 0003968 RNA-directed RNA polymerase activity; PDB: 2J7O_A 2J7N_A.
Probab=100.00 E-value=6e-114 Score=1012.05 Aligned_cols=486 Identities=41% Similarity=0.708 Sum_probs=346.9
Q ss_pred CceeecCCeecccCceeccCCCCCCcEEEEEEEcCCCCccCCcccCCCccCCCcchhhhHHHHHHHHhhcCeEecceEeE
Q 035741 276 SKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFE 355 (890)
Q Consensus 276 tri~l~~P~~e~sNRVlR~f~~~~drFLRV~F~DE~~~~l~~~~~~p~~~~~~~~~~~~i~~rv~~~L~~Gi~I~gR~y~ 355 (890)
||++|.||+++.||||+|+|++ ||||||+|+||++..++.+. ..++.|++++|.+||.|+||+|+
T Consensus 1 ~r~~l~~p~~~~snr~~R~fg~--~~Flrv~f~d~~~~~~~~~~-------------~~~~~~~~~~l~~gi~i~~~~y~ 65 (579)
T PF05183_consen 1 TRIILEPPELEKSNRVLRRFGS--DRFLRVSFPDENSSSLRFSP-------------RVLGRRIRKFLKNGIKIGGRHYR 65 (579)
T ss_dssp --EEE---EEEE-BHHHHHH-G--GGEEEEEEE-TT---SSS-T-------------TSTTEEEEEEEEEE---------
T ss_pred CeEEEECCEecCCCceeEEeCC--CCEEEEEEEcCCCCcccccc-------------hhHHHHHHHHHhccceECcEEEE
Confidence 7999999999999999999976 78999999999988765321 11567789999999999999999
Q ss_pred EEeeccCccccCeEEEEecC----CCCCHHHHHHHhcCccCCCCH-HHHHHHhccccccccCceecc-------------
Q 035741 356 TLAFSNSQERENTLWMFASR----PELTAADIRERMGDFREIKNV-TKYAARLGQSFASSREALHVD------------- 417 (890)
Q Consensus 356 FLa~SnSqLRe~s~wFfa~~----~~~t~~~Ir~wmG~F~~i~~v-aK~aARlgq~FSsT~~tv~v~------------- 417 (890)
|||+|+||+|+|+||||+++ ..+++++|++|||+|++++++ +||+||||||||+|.+++.++
T Consensus 66 fl~~S~sqlr~~~~~f~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~K~~aRl~l~fS~T~~~~~i~~~~~~~i~Di~~~ 145 (579)
T PF05183_consen 66 FLGFSNSQLRDHSCWFFAEDDGDRPPLTVEDIRNWMGDFSNIQSIPAKYAARLGLCFSSTVPTVVIPPDEIEVIPDITSR 145 (579)
T ss_dssp ----------EEEEEEEEEE----B---HHHHHHHHH-GGGTSBH-HHHHHTTHHHHSB-EEEEE--GGGEE-SS--TTS
T ss_pred EeecCCccccCCeEEEEecCCccCCcccHHHHHHhcccccccccHHHHHHHHHHHhccCccceEEecccceEEcCCcCCC
Confidence 99999999999999999987 789999999999999998886 999999999999999976542
Q ss_pred ------cceeeccHHHHHHHHHHcCCCCCCCceEEEeecCee-------------EEeCCCccCC----CCCCCceeEee
Q 035741 418 ------SNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK-------------VTLRNNMFKY----KSESTSLDILA 474 (890)
Q Consensus 418 ------~GvG~IS~~lA~~I~~~l~l~~~~PSAfQiR~gG~K-------------I~lRpSm~KF----~s~~~~LeIv~ 474 (890)
+|||+||+++|++||+++++ ..+|||||||+||+| |+|||||.|| ++.+++|||++
T Consensus 146 ~~~~ftDG~G~IS~~la~~I~~~l~~-~~~PsA~QiR~~G~KGml~vdp~~~~~~I~lr~Sm~Kf~~~~~~~~~~lei~~ 224 (579)
T PF05183_consen 146 NGYVFTDGCGRISPDLARKIAEKLGL-DYVPSAFQIRIGGAKGMLVVDPTLDGPWIQLRPSMIKFDEPWDSEHRTLEIVK 224 (579)
T ss_dssp S--BSSTTEEEE-HHHHHHHHHHHT--SS--SEEEEEETTEEEEEEE-TT-----EEE-TTTB-S----SGGGSEEEEEE
T ss_pred CCccccCCchhhCHHHHHHHHHHcCC-CCCCeEEEEeccCceeEEEECCCCCcceEEEehhhhhhccCcccccCeEEecc
Confidence 39999999999999999998 789999999999999 8999999999 77789999999
Q ss_pred cCC-cccccccc-----c----CChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcCCCchHHHHH-HHHHCCCCCCCch
Q 035741 475 NSK-YQREGVAR-----L----RLDNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVLK-ELLNCGYKPDAEP 543 (890)
Q Consensus 475 ~S~-~~p~~LNR-----L----V~d~vF~~lq~~~l~~l~~~l~d~~~a~~~L~~~~~~~~~~~l~-~ll~~Gf~~~~eP 543 (890)
+|+ +.+++||| | ||+++|+++|+++++++..+++++..|.+++............. .|+.+||.+.++|
T Consensus 225 ~s~~~~~~~LN~q~I~iL~~~gv~~~~f~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~g~~~~~~p 304 (579)
T PF05183_consen 225 YSRPPRPAYLNRQLITILEDLGVPDEVFLELQDEALEELRNILTDPDAARDLLSNQSRDGDFRLIRRQLLDAGFDPLNDP 304 (579)
T ss_dssp E--------B-TTTHHHHHHTBSS-HHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHS--HHHHHHHTHHHHTT--TTTBH
T ss_pred cCCCCCcccccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHhcCCCcchhHHHHHHHHcCCCcccCH
Confidence 999 89999999 3 99999999999999999999999999999998765544333332 8999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcceeecCcceEEEeecCCCCCCCCc-------------------ceEEEeeCCCCCCCce
Q 035741 544 FLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ-------------------GLMVVAKKPCLHPGDM 604 (890)
Q Consensus 544 fl~~lL~~~~~~~L~~Lk~K~RI~Vp~s~~l~GV~DetG~L~~GE-------------------G~VlV~RnPclHPGDI 604 (890)
|++++++.++.+.+.++|+|+||+||+|++||||+||||+|+||| |+|+|+||||+|||||
T Consensus 305 fl~~~l~~~~~~~l~~~~~~~ri~v~~s~~l~gv~D~~g~L~~geV~~~~s~~~~~~~~~~~~~g~VlV~R~P~~~pgDi 384 (579)
T PF05183_consen 305 FLRSLLKALIKKKLKELKKKARIPVPKSRYLMGVPDPTGVLKEGEVFVQFSSDEETGSQSQVLEGDVLVTRNPCLHPGDI 384 (579)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--B--SSEEEEEEEE-TTS---TTEEEEEEEEEEEETTEEEEEE-EEEEE-SS--SGGGE
T ss_pred HHHHHHHHHHHHHHHhccceEEEEcCCCcEEEEeeCCcCCCCCCEEEEEeccccccCCCcceeeeeEEEecCCccCcCce
Confidence 999999999999999999999999999999999999999999998 8999999999999999
Q ss_pred EEEEEecCCCCCCCCCeEEcCCCCCCCCCCcccCCCCCCCeEEEEecCCCCCCC-------CCCCCCCCCCcc-------
Q 035741 605 RVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPL-------QFQPTAYTPAPE------- 670 (890)
Q Consensus 605 r~v~AVd~P~L~hL~dVIVFp~kG~Rplps~lSGGDLDGD~Y~ViWD~~Lip~~-------~~~P~~Y~~~~~------- 670 (890)
|+|+||++|+|+||+||||||++|+||+|++|||||||||.|||||||+||.++ ..+|+.|...+.
T Consensus 385 r~~~av~~p~L~~l~~vIVF~~~G~r~~~~~lsGgDlDGD~~~V~wd~~lv~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 464 (579)
T PF05183_consen 385 RKVKAVDKPELRHLKDVIVFSTKGDRPLPSELSGGDLDGDEYFVCWDPRLVEPFKNPPPPKSEEPMNYESEKVSDSSGDP 464 (579)
T ss_dssp EEEEE---GGGTT--SEEEE-S-SSS-HHHHTTT--SSS-EEEEE--HHHHHTB-----------TTTSEE---BHHHHT
T ss_pred eEEEeeccHHHcccCCEEEeCCCCCCCchHHhcCCCCCCceEEEEeCHhhhhhhhccCcccCCCccccccccccccccCc
Confidence 999999999999999999999999999999999999999999999999995444 456666443322
Q ss_pred cccCCCCCHHHHHHHHHH-hhccChhHHHHHHHHHHhccCCCCCCCCchHHHHHHHhhccccCCCCCccccCcc-ccCCC
Q 035741 671 KILARDVTIEDVEEYFAD-YIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSR-LRVKI 748 (890)
Q Consensus 671 ~~l~~~vt~~di~~ffv~-ym~~d~LG~is~aHl~~aD~~~~G~~~~~Cl~LA~L~S~AVD~~KTG~~v~ip~~-L~~~~ 748 (890)
..+.++++.+++++||++ |+.++.||+|+|+|+++||+.+ |+.++.|++||++||+||||+|||+++.++.. ++++.
T Consensus 465 ~~~~~~~~~~~~~~f~~~~~~~~~~lG~~s~~h~~~~d~~~-g~~~~~~~~La~l~s~~vD~~KtG~~~~~~~~~~~~~~ 543 (579)
T PF05183_consen 465 KPLSRPVTEEDIQDFFLEFYINNDNLGLISNAHLAIADQSS-GIDSPECLKLAQLHSQAVDAPKTGVPVKLPRWPLKPPE 543 (579)
T ss_dssp T-SSHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHT--SSSHHHHHHHHHHHHHTTHHHHTEE--HHHHHSS---
T ss_pred cccCccccHHHHHHHHHHhhcccCcHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHhCccccCCCccccchhhcCCC
Confidence 234566788999999999 9999999999999999999886 99999999999999999999999999999988 89999
Q ss_pred CCCCcCCCCCCc-cccCCccchhhhhhcccC
Q 035741 749 YPDFMEKQDKTW-YESQHIVGNLYREVNGIA 778 (890)
Q Consensus 749 ~PdFMek~~~~~-Y~S~kiLG~LYr~v~~~~ 778 (890)
|||||++..++. |+|++|||+|||+|++..
T Consensus 544 ~P~~~~~~~~~~~y~S~~ilg~ly~~v~~~~ 574 (579)
T PF05183_consen 544 YPDFMEKEDKKSYYKSTSILGQLYREVKEIV 574 (579)
T ss_dssp --GGGSS-----SSS--SHHHHHHHTTH---
T ss_pred CChhhccccccccCCCccHHHHHHHHHHhhc
Confidence 999999977665 799999999999998875
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.50 E-value=8.1e-14 Score=137.62 Aligned_cols=80 Identities=16% Similarity=0.232 Sum_probs=75.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEE
Q 035741 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKA 77 (890)
Q Consensus 1 M~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v 77 (890)
++.+|||+|||+++|+++|+++|++| |+|.+++|+.|+ ++||||||+|++.++|++|++.+| +..++|+.|+|
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~---G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~ln-g~~i~Gr~l~V 108 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHF---GDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMD-GKELNGRHIRV 108 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC---CCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcC-CCEECCEEEEE
Confidence 46789999999999999999999999 999999999998 699999999999999999999888 79999999999
Q ss_pred ecCCCCC
Q 035741 78 SSAKRRT 84 (890)
Q Consensus 78 ~ea~~di 84 (890)
+.|.++-
T Consensus 109 ~~a~~~~ 115 (144)
T PLN03134 109 NPANDRP 115 (144)
T ss_pred EeCCcCC
Confidence 9987664
No 4
>PLN03213 repressor of silencing 3; Provisional
Probab=99.37 E-value=9.1e-13 Score=146.92 Aligned_cols=78 Identities=15% Similarity=0.189 Sum_probs=72.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC-CCCceEEEEecCH--HHHHHHHHHHhcCccccCceeEEec
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK-GSRAHAIVEFTTV--EAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr-~sRgfgfVem~~~--~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
.+||||||+|++|++||++.|++| |+|..|+|+ | ..||||||+|.+. +++.+||+.+| |..++||.|+||.
T Consensus 11 MRIYVGNLSydVTEDDLravFSeF---GsVkdVEIp--RETGRGFAFVEMssdddaEeeKAISaLN-GAEWKGR~LKVNK 84 (759)
T PLN03213 11 VRLHVGGLGESVGRDDLLKIFSPM---GTVDAVEFV--RTKGRSFAYIDFSPSSTNSLTKLFSTYN-GCVWKGGRLRLEK 84 (759)
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhc---CCeeEEEEe--cccCCceEEEEecCCcHHHHHHHHHHhc-CCeecCceeEEee
Confidence 579999999999999999999999 999999999 5 4499999999987 67899999998 8999999999999
Q ss_pred CCCCCCC
Q 035741 80 AKRRTPH 86 (890)
Q Consensus 80 a~~di~p 86 (890)
|++--+.
T Consensus 85 AKP~YLe 91 (759)
T PLN03213 85 AKEHYLA 91 (759)
T ss_pred ccHHHHH
Confidence 9887665
No 5
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.37 E-value=2.1e-12 Score=137.67 Aligned_cols=77 Identities=16% Similarity=0.191 Sum_probs=72.1
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecC
Q 035741 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSA 80 (890)
Q Consensus 1 M~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea 80 (890)
|.+||||||||+++|+++|++||+.| |+|..|+|..|+.+||||||+|++.++|+.|+. +| |..++||.|+|+.+
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~---G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-Ln-G~~l~gr~V~Vt~a 77 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFS---GDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LS-GATIVDQSVTITPA 77 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hc-CCeeCCceEEEEec
Confidence 56889999999999999999999999 999999999999889999999999999999995 55 89999999999997
Q ss_pred CC
Q 035741 81 KR 82 (890)
Q Consensus 81 ~~ 82 (890)
+.
T Consensus 78 ~~ 79 (260)
T PLN03120 78 ED 79 (260)
T ss_pred cC
Confidence 53
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.34 E-value=2.7e-12 Score=141.94 Aligned_cols=77 Identities=16% Similarity=0.242 Sum_probs=72.3
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
+.+|+|+|||+++++++|+++|++| |.|.+|+|+.|+ +|||||||+|.+.++|.+|++.+| |..++||.|+|.
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~f---G~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~ln-G~~~~gr~i~V~ 344 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPF---GAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLN-GYTLGNRVLQVS 344 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhC---CCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhC-CCEECCeEEEEE
Confidence 3479999999999999999999999 999999999998 799999999999999999999998 899999999998
Q ss_pred cCCC
Q 035741 79 SAKR 82 (890)
Q Consensus 79 ea~~ 82 (890)
-+..
T Consensus 345 ~~~~ 348 (352)
T TIGR01661 345 FKTN 348 (352)
T ss_pred EccC
Confidence 7643
No 7
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.34 E-value=3.7e-12 Score=107.54 Aligned_cols=68 Identities=16% Similarity=0.263 Sum_probs=64.8
Q ss_pred EEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccccCceeE
Q 035741 5 IMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLK 76 (890)
Q Consensus 5 i~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~ 76 (890)
|||+|||..+|+++|+++|++| |.|..+++..+. +++|||||+|++.++|++|++.++ |..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~---g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~-g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQF---GKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELN-GKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTT---STEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHT-TEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHh---hhcccccccccccccccceEEEEEcCHHHHHHHHHHcC-CCEECccCcC
Confidence 7999999999999999999999 999999999975 799999999999999999999888 7999999986
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.26 E-value=1.1e-11 Score=137.25 Aligned_cols=76 Identities=14% Similarity=0.201 Sum_probs=71.8
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
.||||||||+++|++||+++|++| |+|.+|+|+.|+ +|||||||+|.+.++|++|+..+| |..++|+.|+|.-
T Consensus 4 ~~l~V~nLp~~~~e~~l~~~F~~~---G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~-g~~l~g~~i~v~~ 79 (352)
T TIGR01661 4 TNLIVNYLPQTMTQEEIRSLFTSI---GEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLN-GLRLQNKTIKVSY 79 (352)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHcc---CCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcc-cEEECCeeEEEEe
Confidence 479999999999999999999999 999999999997 699999999999999999999998 7999999999987
Q ss_pred CCC
Q 035741 80 AKR 82 (890)
Q Consensus 80 a~~ 82 (890)
+++
T Consensus 80 a~~ 82 (352)
T TIGR01661 80 ARP 82 (352)
T ss_pred ecc
Confidence 754
No 9
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.24 E-value=2.4e-11 Score=103.91 Aligned_cols=68 Identities=24% Similarity=0.325 Sum_probs=62.8
Q ss_pred EEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccccCceeE
Q 035741 5 IMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLK 76 (890)
Q Consensus 5 i~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~ 76 (890)
|||+|||+++|+++|+++|+.+ |.|..+++..++ ++||+|||+|.+.++|+.|+...+ +..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~---g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~-~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRF---GPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLN-GKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTS---SBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHT-TEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhc---CCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCC-CcEECCEEcC
Confidence 7999999999999999999999 999999999997 699999999999999999999987 7999999985
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.24 E-value=2.1e-11 Score=136.43 Aligned_cols=76 Identities=13% Similarity=0.111 Sum_probs=71.9
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
.||||+|||+++|+++|+++|+++ |.|.+|+|+.|+ ++||||||+|++.++|+.|++.+| +..+.++.|+|..
T Consensus 108 ~~LfVgnLp~~~te~~L~~lF~~~---G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~Ln-G~~l~gr~i~V~~ 183 (346)
T TIGR01659 108 TNLIVNYLPQDMTDRELYALFRTI---GPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLN-GITVRNKRLKVSY 183 (346)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcC-CCccCCceeeeec
Confidence 579999999999999999999999 999999999997 699999999999999999999888 8999999999998
Q ss_pred CCC
Q 035741 80 AKR 82 (890)
Q Consensus 80 a~~ 82 (890)
|++
T Consensus 184 a~p 186 (346)
T TIGR01659 184 ARP 186 (346)
T ss_pred ccc
Confidence 754
No 11
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=5.6e-11 Score=128.18 Aligned_cols=78 Identities=18% Similarity=0.207 Sum_probs=74.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC-CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCC
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK-GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAK 81 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr-~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~ 81 (890)
|.|+|+||||..-+-||+..|++| |.|.+||||..- +|||||||.|++.+.|+.|-+.++ |..+.||.+-||-|-
T Consensus 97 kRLhVSNIPFrFRdpDL~aMF~kf---G~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LH-gt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 97 KRLHVSNIPFRFRDPDLRAMFEKF---GKVLDVEIIFNERGSKGFGFVTMENPADADRARAELH-GTVVEGRKIEVNNAT 172 (376)
T ss_pred ceeEeecCCccccCccHHHHHHhh---CceeeEEEEeccCCCCccceEEecChhhHHHHHHHhh-cceeeceEEEEeccc
Confidence 679999999999999999999999 999999999876 799999999999999999999999 899999999999998
Q ss_pred CCC
Q 035741 82 RRT 84 (890)
Q Consensus 82 ~di 84 (890)
+++
T Consensus 173 arV 175 (376)
T KOG0125|consen 173 ARV 175 (376)
T ss_pred hhh
Confidence 876
No 12
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.13 E-value=1.8e-10 Score=136.28 Aligned_cols=74 Identities=12% Similarity=0.180 Sum_probs=70.7
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
+.+|||||||+++++++|+++|++| |.|.+|+|+.|+ +|||||||+|++.++|+.|+..+| |..++||.|+|+
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~f---G~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~ln-G~~i~GR~IkV~ 182 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPF---GPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMN-GQMLGGRNIKVG 182 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHcc---CCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcC-CeEEecceeeec
Confidence 4689999999999999999999999 999999999998 699999999999999999999988 899999999998
Q ss_pred c
Q 035741 79 S 79 (890)
Q Consensus 79 e 79 (890)
.
T Consensus 183 r 183 (612)
T TIGR01645 183 R 183 (612)
T ss_pred c
Confidence 4
No 13
>smart00362 RRM_2 RNA recognition motif.
Probab=99.13 E-value=2.7e-10 Score=94.44 Aligned_cols=71 Identities=18% Similarity=0.297 Sum_probs=66.3
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC-CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 4 MIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK-GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 4 ti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr-~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
||+|+|||..++.++|+++|++| |+|..+++..++ .++|+|||+|.+.++|+.|+..++ +..+.|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~---g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~-~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKF---GPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALN-GTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhc---CCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhC-CcEECCEEEeeC
Confidence 68999999999999999999999 999999999886 689999999999999999999887 788999999874
No 14
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.12 E-value=9.1e-11 Score=122.15 Aligned_cols=83 Identities=17% Similarity=0.122 Sum_probs=74.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
.+|+||||||.++.|+|+++||+| |+|..+.||+|| ||||||||.|.+.++|..|..-.| -..+||.-++|-
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqf---GeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~--piIdGR~aNcnl 87 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQF---GEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN--PIIDGRKANCNL 87 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHh---CceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC--Ccccccccccch
Confidence 469999999999999999999999 999999999999 899999999999999998877654 789999999998
Q ss_pred CCCCCCCCCCCC
Q 035741 80 AKRRTPHFAKRT 91 (890)
Q Consensus 80 a~~di~p~rp~~ 91 (890)
|.---.| ||..
T Consensus 88 A~lg~~p-R~~~ 98 (247)
T KOG0149|consen 88 ASLGGKP-RPVP 98 (247)
T ss_pred hhhcCcc-CCCC
Confidence 8765556 6543
No 15
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.12 E-value=1.9e-10 Score=121.32 Aligned_cols=80 Identities=15% Similarity=0.118 Sum_probs=72.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCC
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAK 81 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~ 81 (890)
+-||+|+||++++|+++|++||+.+ |+|..|+|+.|++++|||||+|.+.++|+.|+.| | |..+.++.+.|..+.
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~---G~I~~V~I~~D~et~gfAfVtF~d~~aaetAllL-n-Ga~l~d~~I~It~~~ 79 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHC---GAIEHVEIIRSGEYACTAYVTFKDAYALETAVLL-S-GATIVDQRVCITRWG 79 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhc---CCeEEEEEecCCCcceEEEEEECCHHHHHHHHhc-C-CCeeCCceEEEEeCc
Confidence 3479999999999999999999999 9999999999998889999999999999999955 4 899999999999876
Q ss_pred CCCCC
Q 035741 82 RRTPH 86 (890)
Q Consensus 82 ~di~p 86 (890)
.-..|
T Consensus 80 ~y~~~ 84 (243)
T PLN03121 80 QYEDE 84 (243)
T ss_pred ccccC
Confidence 54433
No 16
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.10 E-value=2e-10 Score=135.74 Aligned_cols=76 Identities=12% Similarity=0.262 Sum_probs=72.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
++|||||||.++++++|+++|+.| |+|.+++|..|+ ++||||||+|++.++|.+|++.+| +..++|+.|+|+.
T Consensus 205 ~rLfVgnLp~~vteedLk~lFs~F---G~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amN-g~elgGr~LrV~k 280 (612)
T TIGR01645 205 NRIYVASVHPDLSETDIKSVFEAF---GEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN-LFDLGGQYLRVGK 280 (612)
T ss_pred ceEEeecCCCCCCHHHHHHHHhhc---CCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhC-CCeeCCeEEEEEe
Confidence 579999999999999999999999 999999999997 599999999999999999999998 8999999999997
Q ss_pred CCC
Q 035741 80 AKR 82 (890)
Q Consensus 80 a~~ 82 (890)
|-+
T Consensus 281 Ai~ 283 (612)
T TIGR01645 281 CVT 283 (612)
T ss_pred cCC
Confidence 653
No 17
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.10 E-value=3.4e-10 Score=131.82 Aligned_cols=111 Identities=14% Similarity=0.078 Sum_probs=85.6
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHh-cCccccCceeEEecC
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLAR-ERLSYGNSFLKASSA 80 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~-~~~~~~gr~L~v~ea 80 (890)
+++|+|||||+++|+++|+++|++| |+|.+|+|+ ++||||||||++.++|++|+..++ ++..++|+.|+|+-+
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~f---G~V~~v~i~---~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPF---GPVSYVMML---PGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhc---CCeeEEEEE---CCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 6899999999999999999999999 999999999 467999999999999999999764 478999999999999
Q ss_pred CCCCCCCCCCCcc---ccccCCcEEEEe---eccccceeEEeecc
Q 035741 81 KRRTPHFAKRTPH---YKLGGDLKLNFG---CQISKDKFSVFWSQ 119 (890)
Q Consensus 81 ~~di~p~rp~~~~---~~~~~~~~~~~g---~~~~~~~~~~~~~~ 119 (890)
.++.+. ++.... ...+.-..|.++ +.+.++.+.-+++.
T Consensus 76 ~~~~~~-~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~ 119 (481)
T TIGR01649 76 TSQEIK-RDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNP 119 (481)
T ss_pred CCcccc-cCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhc
Confidence 877666 554211 011101234444 35666665555553
No 18
>smart00360 RRM RNA recognition motif.
Probab=99.07 E-value=4e-10 Score=92.90 Aligned_cols=68 Identities=19% Similarity=0.254 Sum_probs=63.8
Q ss_pred EeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 7 LYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 7 Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
|+|||.++++++|+++|+++ |+|..++|..++ +++|+|||+|.+.++|..|+..++ +..++|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~---g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~-~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKF---GKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALN-GKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhh---CCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcC-CCeeCCcEEEeC
Confidence 68999999999999999999 999999999987 689999999999999999999987 788999999874
No 19
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.07 E-value=3.6e-10 Score=126.55 Aligned_cols=80 Identities=13% Similarity=0.120 Sum_probs=72.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccC--ceeEE
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGN--SFLKA 77 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~g--r~L~v 77 (890)
.+|||+|||+++|+++|+++|++| |+|..++|+.|+ ++||||||+|++.++|++||+.+| +..+.| +.|+|
T Consensus 194 ~~lfV~nLp~~vtee~L~~~F~~f---G~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ln-g~~~~g~~~~l~V 269 (346)
T TIGR01659 194 TNLYVTNLPRTITDDQLDTIFGKY---GQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALN-NVIPEGGSQPLTV 269 (346)
T ss_pred ceeEEeCCCCcccHHHHHHHHHhc---CCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhC-CCccCCCceeEEE
Confidence 469999999999999999999999 999999999998 699999999999999999999998 565544 79999
Q ss_pred ecCCCCCCC
Q 035741 78 SSAKRRTPH 86 (890)
Q Consensus 78 ~ea~~di~p 86 (890)
.-|+..--+
T Consensus 270 ~~a~~~~~~ 278 (346)
T TIGR01659 270 RLAEEHGKA 278 (346)
T ss_pred EECCccccc
Confidence 988876543
No 20
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.04 E-value=5.2e-10 Score=132.23 Aligned_cols=79 Identities=18% Similarity=0.230 Sum_probs=74.6
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
+.+|||+|||.++|+++|+++|++| |+|.+++|+.|. +|||||||+|++.++|.+|+..+| |..++|+.|+|..
T Consensus 285 ~~~l~V~nl~~~~~~~~L~~~F~~~---G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~-g~~~~gk~l~V~~ 360 (562)
T TIGR01628 285 GVNLYVKNLDDTVTDEKLRELFSEC---GEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMH-GRMLGGKPLYVAL 360 (562)
T ss_pred CCEEEEeCCCCccCHHHHHHHHHhc---CCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhc-CCeeCCceeEEEe
Confidence 3579999999999999999999999 999999999998 799999999999999999999998 7999999999999
Q ss_pred CCCCC
Q 035741 80 AKRRT 84 (890)
Q Consensus 80 a~~di 84 (890)
|.++-
T Consensus 361 a~~k~ 365 (562)
T TIGR01628 361 AQRKE 365 (562)
T ss_pred ccCcH
Confidence 98764
No 21
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.01 E-value=8.6e-10 Score=126.72 Aligned_cols=75 Identities=21% Similarity=0.237 Sum_probs=69.7
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
.+||||+|||+++|+++|++||+.+ |.|.+|+|+.|+ ++||||||+|.+.+.|++|+.+ +|..+.|+.|.|.
T Consensus 89 ~~~l~V~nlp~~~~~~~l~~~F~~~---G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l--~g~~~~g~~i~v~ 163 (457)
T TIGR01622 89 DRTVFVLQLALKARERDLYEFFSKV---GKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALAL--TGQMLLGRPIIVQ 163 (457)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhc---CCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHh--CCCEECCeeeEEe
Confidence 4689999999999999999999999 999999999998 6999999999999999999985 4899999999998
Q ss_pred cCC
Q 035741 79 SAK 81 (890)
Q Consensus 79 ea~ 81 (890)
.+.
T Consensus 164 ~~~ 166 (457)
T TIGR01622 164 SSQ 166 (457)
T ss_pred ecc
Confidence 654
No 22
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.99 E-value=1e-09 Score=127.67 Aligned_cols=78 Identities=17% Similarity=0.189 Sum_probs=73.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
.+|||||||+++|+++|+++|++| |.|.+++|+.|+ +++|||||+|++.++|..|+..+| |..++|+.|+|..
T Consensus 296 ~~l~v~nlp~~~~~~~l~~~f~~~---G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~-g~~~~~~~l~v~~ 371 (509)
T TIGR01642 296 DRIYIGNLPLYLGEDQIKELLESF---GDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALN-GKDTGDNKLHVQR 371 (509)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcC-CCEECCeEEEEEE
Confidence 579999999999999999999999 999999999987 599999999999999999999998 8999999999999
Q ss_pred CCCCC
Q 035741 80 AKRRT 84 (890)
Q Consensus 80 a~~di 84 (890)
|....
T Consensus 372 a~~~~ 376 (509)
T TIGR01642 372 ACVGA 376 (509)
T ss_pred CccCC
Confidence 86554
No 23
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.98 E-value=1.5e-09 Score=111.25 Aligned_cols=76 Identities=18% Similarity=0.249 Sum_probs=73.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
.+|||||||+.+|+++|+++|.++ |.|..+.|..|+ ++||||||+|.+.+.|..|+..++ +..|.|+.|+|..
T Consensus 116 ~~l~v~nL~~~~~~~~l~~~F~~~---g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~-~~~~~~~~~~v~~ 191 (306)
T COG0724 116 NTLFVGNLPYDVTEEDLRELFKKF---GPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELN-GKELEGRPLRVQK 191 (306)
T ss_pred ceEEEeCCCCCCCHHHHHHHHHhc---CceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcC-CCeECCceeEeec
Confidence 689999999999999999999999 999999999998 799999999999999999999998 8999999999999
Q ss_pred CCC
Q 035741 80 AKR 82 (890)
Q Consensus 80 a~~ 82 (890)
+..
T Consensus 192 ~~~ 194 (306)
T COG0724 192 AQP 194 (306)
T ss_pred ccc
Confidence 765
No 24
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.98 E-value=3e-09 Score=88.60 Aligned_cols=71 Identities=20% Similarity=0.288 Sum_probs=66.7
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 4 MIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 4 ti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
+|+|+|||..+++++|+++|+.+ |.|..+++..+. +++|+|+|+|.+.++|..|+..++ +..+.|+.+.|+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~---g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~-~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKF---GKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALN-GKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhc---CCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhC-CCeECCeEEEEe
Confidence 58999999999999999999999 999999999888 689999999999999999999987 677999999886
No 25
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.96 E-value=1.7e-09 Score=127.95 Aligned_cols=76 Identities=13% Similarity=0.124 Sum_probs=71.2
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecC
Q 035741 4 MIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSA 80 (890)
Q Consensus 4 ti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea 80 (890)
+|||||||.++|+++|+++|+++ |+|.+|+|..|+ +|+|||||+|.+.++|++|++.+| +..+.|+.|+|.-+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~---G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln-~~~i~gk~i~i~~s 77 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPF---GPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMN-FKRLGGKPIRIMWS 77 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhC-CCEECCeeEEeecc
Confidence 79999999999999999999999 999999999998 699999999999999999999998 78899999999876
Q ss_pred CCC
Q 035741 81 KRR 83 (890)
Q Consensus 81 ~~d 83 (890)
..+
T Consensus 78 ~~~ 80 (562)
T TIGR01628 78 QRD 80 (562)
T ss_pred ccc
Confidence 544
No 26
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.96 E-value=2.2e-09 Score=125.13 Aligned_cols=79 Identities=14% Similarity=0.185 Sum_probs=72.5
Q ss_pred CceEEEeCCCC-CCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecC
Q 035741 2 AKMIMLYGFAS-LASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSA 80 (890)
Q Consensus 2 ~kti~Vgnlp~-~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea 80 (890)
+.+|||+|||+ .+|+++|+++|++| |+|.+|+|..+ +||||||||.+.++|+.|+..+| |..+.|+.|+|+.+
T Consensus 275 ~~~l~v~nL~~~~vt~~~L~~lF~~y---G~V~~vki~~~--~~g~afV~f~~~~~A~~Ai~~ln-g~~l~g~~l~v~~s 348 (481)
T TIGR01649 275 GSVLMVSGLHQEKVNCDRLFNLFCVY---GNVERVKFMKN--KKETALIEMADPYQAQLALTHLN-GVKLFGKPLRVCPS 348 (481)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHhc---CCeEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhC-CCEECCceEEEEEc
Confidence 35899999998 69999999999999 99999999976 47999999999999999999998 79999999999999
Q ss_pred CCCCCC
Q 035741 81 KRRTPH 86 (890)
Q Consensus 81 ~~di~p 86 (890)
+...+.
T Consensus 349 ~~~~~~ 354 (481)
T TIGR01649 349 KQQNVQ 354 (481)
T ss_pred cccccc
Confidence 877654
No 27
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.95 E-value=1.8e-09 Score=124.11 Aligned_cols=77 Identities=12% Similarity=0.204 Sum_probs=72.8
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
.+|||+|||+++|+++|+++|++| |+|.+|.|..|+ ++||||||+|.+.++|.+|+..+| |..++|+.|+|.-
T Consensus 187 ~~l~v~nl~~~~te~~l~~~f~~~---G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~-g~~i~g~~i~v~~ 262 (457)
T TIGR01622 187 LKLYVGNLHFNITEQELRQIFEPF---GDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMN-GFELAGRPIKVGY 262 (457)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHhc---CCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcC-CcEECCEEEEEEE
Confidence 589999999999999999999999 999999999998 689999999999999999999998 7999999999999
Q ss_pred CCCC
Q 035741 80 AKRR 83 (890)
Q Consensus 80 a~~d 83 (890)
|..-
T Consensus 263 a~~~ 266 (457)
T TIGR01622 263 AQDS 266 (457)
T ss_pred ccCC
Confidence 8843
No 28
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.95 E-value=1.5e-09 Score=128.07 Aligned_cols=73 Identities=14% Similarity=0.089 Sum_probs=66.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccc-cCceeEEec
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSY-GNSFLKASS 79 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~-~gr~L~v~e 79 (890)
.+|+|||||+++++++|+++|+++ |+|..++|+.|. +|||||||+|++.++|++|+..+| +..+ .|+.|.|..
T Consensus 59 ~~lFVgnLp~~~tEd~L~~~F~~~---G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~ln-g~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 59 CEVFVGKIPRDLYEDELVPLFEKA---GPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLN-NYEIRPGRLLGVCI 134 (578)
T ss_pred CEEEeCCCCCCCCHHHHHHHHHhh---CCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcC-CCeecCCccccccc
Confidence 589999999999999999999999 999999999998 799999999999999999999998 5655 477777754
No 29
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.93 E-value=1.4e-09 Score=124.30 Aligned_cols=78 Identities=14% Similarity=0.166 Sum_probs=73.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
.++||||+||+.++++|.+.|++. |-|.+++++.|| ++|||||+||++.+.|+.|++.+| |.+++||.|+|+-
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~---g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lN-g~~~~gr~l~v~~ 94 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGV---GPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLN-GAEFNGRKLRVNY 94 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhcc---CccceeeecccccCCCcCceeeEecCchhhHHHHHHhcC-CcccCCceEEeec
Confidence 469999999999999999999999 999999999999 799999999999999999999998 8999999999998
Q ss_pred CCCCC
Q 035741 80 AKRRT 84 (890)
Q Consensus 80 a~~di 84 (890)
+..+=
T Consensus 95 ~~~~~ 99 (435)
T KOG0108|consen 95 ASNRK 99 (435)
T ss_pred ccccc
Confidence 75543
No 30
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=98.86 E-value=4.5e-09 Score=105.50 Aligned_cols=74 Identities=15% Similarity=0.139 Sum_probs=67.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecC
Q 035741 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSA 80 (890)
Q Consensus 1 M~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea 80 (890)
|..++|||||+..|+..||...|..| |.+.+|=|. +++-|||||||++...|+.|+..|+ |..+.|..++|.-.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~y---G~lrsvWvA--rnPPGfAFVEFed~RDA~DAvr~LD-G~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKY---GPLRSVWVA--RNPPGFAFVEFEDPRDAEDAVRYLD-GKDICGSRIRVELS 82 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhc---CcceeEEEe--ecCCCceEEeccCcccHHHHHhhcC-CccccCceEEEEee
Confidence 45679999999999999999999999 999987655 5899999999999999999999998 89999999999754
No 31
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.84 E-value=8.1e-09 Score=122.09 Aligned_cols=74 Identities=19% Similarity=0.149 Sum_probs=68.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCCC
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAKR 82 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~~ 82 (890)
++|||+|||+++|+++|+++|++| +.|+|..|+++ |+||||+|++.++|++|++.+| +..++|+.|+|.-|++
T Consensus 234 k~LfVgNL~~~~tee~L~~~F~~f-~~G~I~rV~~~-----rgfAFVeF~s~e~A~kAi~~ln-G~~i~Gr~I~V~~Akp 306 (578)
T TIGR01648 234 KILYVRNLMTTTTEEIIEKSFSEF-KPGKVERVKKI-----RDYAFVHFEDREDAVKAMDELN-GKELEGSEIEVTLAKP 306 (578)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhc-CCCceEEEEee-----cCeEEEEeCCHHHHHHHHHHhC-CCEECCEEEEEEEccC
Confidence 679999999999999999999998 67899999875 6899999999999999999988 7999999999999876
Q ss_pred C
Q 035741 83 R 83 (890)
Q Consensus 83 d 83 (890)
.
T Consensus 307 ~ 307 (578)
T TIGR01648 307 V 307 (578)
T ss_pred C
Confidence 4
No 32
>smart00361 RRM_1 RNA recognition motif.
Probab=98.77 E-value=1.7e-08 Score=87.59 Aligned_cols=59 Identities=14% Similarity=0.138 Sum_probs=53.7
Q ss_pred HHHHHHHHh----hccCCceEEEEE-eeecC-----CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 16 PKAVKEFLE----EHTGEGTVSGVE-VGQNK-----GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 16 ~~~l~~~f~----~~~~~G~V~s~~-i~~dr-----~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
+++|+++|+ .| |+|.++. |+.|+ +|||||||+|++.++|++|+..+| |..++||.|+++
T Consensus 2 ~~~l~~~~~~~~~~f---G~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~-g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYF---GEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLN-GRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhc---CCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhC-CCEECCEEEEeC
Confidence 678999999 99 9999995 88876 489999999999999999999998 799999999874
No 33
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=3.5e-08 Score=103.56 Aligned_cols=78 Identities=17% Similarity=0.234 Sum_probs=72.7
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
+.||+|.|||-+++++||.++|-.+ |.|..+-|..|+ .|||||||.|.+.+.|++||+.|| |.-|+.=-|+|-
T Consensus 189 ~~tvRvtNLsed~~E~dL~eLf~~f---g~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~Ln-G~gyd~LILrvE 264 (270)
T KOG0122|consen 189 EATVRVTNLSEDMREDDLEELFRPF---GPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLN-GYGYDNLILRVE 264 (270)
T ss_pred cceeEEecCccccChhHHHHHhhcc---CccceeEEEEccccCcccceEEEEEecHHHHHHHHHHcc-CcccceEEEEEE
Confidence 4689999999999999999999999 999999999999 699999999999999999999998 788888889998
Q ss_pred cCCCC
Q 035741 79 SAKRR 83 (890)
Q Consensus 79 ea~~d 83 (890)
=++|.
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 77654
No 34
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.71 E-value=1.7e-08 Score=103.51 Aligned_cols=78 Identities=18% Similarity=0.211 Sum_probs=73.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
.+|.|-||-|-+|+++|+..||.| |.|-.|-|--|+ .|||||||-|-+..+|+.|+++++ |..++|+.|+|.-
T Consensus 14 ~SLkVdNLTyRTspd~LrrvFekY---G~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damD-G~~ldgRelrVq~ 89 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSPDDLRRVFEKY---GRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMD-GAVLDGRELRVQM 89 (256)
T ss_pred eeEEecceeccCCHHHHHHHHHHh---CcccceecccccccccccceeEEEeeecchHHHHHHhhc-ceeeccceeeehh
Confidence 479999999999999999999999 999999999999 699999999999999999999997 8999999999999
Q ss_pred CCCCC
Q 035741 80 AKRRT 84 (890)
Q Consensus 80 a~~di 84 (890)
|+-.-
T Consensus 90 arygr 94 (256)
T KOG4207|consen 90 ARYGR 94 (256)
T ss_pred hhcCC
Confidence 86554
No 35
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.71 E-value=3.4e-08 Score=104.09 Aligned_cols=72 Identities=18% Similarity=0.274 Sum_probs=68.5
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 4 MIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 4 ti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
-|+|+||...+.|.-|.++|..| |.|..|||+.|- +.+|||||.|++-++|.-||..|| |..+++|.|.|+-
T Consensus 280 ciFvYNLspd~de~~LWQlFgpF---GAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLN-Gy~lg~rvLQVsF 354 (360)
T KOG0145|consen 280 CIFVYNLSPDADESILWQLFGPF---GAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLN-GYRLGDRVLQVSF 354 (360)
T ss_pred EEEEEecCCCchHhHHHHHhCcc---cceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhc-CccccceEEEEEE
Confidence 38999999999999999999999 999999999998 799999999999999999999998 8999999999974
No 36
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.70 E-value=3.1e-08 Score=115.42 Aligned_cols=77 Identities=29% Similarity=0.426 Sum_probs=62.4
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhcc---C------CceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccC
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHT---G------EGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGN 72 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~---~------~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~g 72 (890)
+.||||||||+++|+++|++||.++. | .+.|.++.+. +++|||||||.+.++|..|++ +| |..|.|
T Consensus 175 ~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~---~~kg~afVeF~~~e~A~~Al~-l~-g~~~~g 249 (509)
T TIGR01642 175 ARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN---KEKNFAFLEFRTVEEATFAMA-LD-SIIYSN 249 (509)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC---CCCCEEEEEeCCHHHHhhhhc-CC-CeEeeC
Confidence 46899999999999999999999861 2 1334444443 678999999999999999996 55 899999
Q ss_pred ceeEEecCCCC
Q 035741 73 SFLKASSAKRR 83 (890)
Q Consensus 73 r~L~v~ea~~d 83 (890)
+.|+|......
T Consensus 250 ~~l~v~r~~~~ 260 (509)
T TIGR01642 250 VFLKIRRPHDY 260 (509)
T ss_pred ceeEecCcccc
Confidence 99999865443
No 37
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.69 E-value=2.7e-08 Score=100.57 Aligned_cols=93 Identities=15% Similarity=0.196 Sum_probs=82.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
..|||||||+..+|++-|.++|-+. |-|..+.|-.|| ..+|||||||.++|.|+-|+..+| ...+-||.|+||
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqa---gpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln-~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQA---GPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILN-MVKLYGRPIRVN 84 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhc---CceeeeecchhhhcccccceeEEEEechhhhHHHHHHHH-HHHhcCceeEEE
Confidence 3689999999999999999999999 999999999999 589999999999999999999999 788999999999
Q ss_pred cCCCCCCCCCCCCccccccCCcEEEEeec
Q 035741 79 SAKRRTPHFAKRTPHYKLGGDLKLNFGCQ 107 (890)
Q Consensus 79 ea~~di~p~rp~~~~~~~~~~~~~~~g~~ 107 (890)
-|..+- -++++++.|.+|.+
T Consensus 85 kas~~~---------~nl~vganlfvgNL 104 (203)
T KOG0131|consen 85 KASAHQ---------KNLDVGANLFVGNL 104 (203)
T ss_pred eccccc---------cccccccccccccc
Confidence 987332 35666777777763
No 38
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=9.6e-09 Score=106.00 Aligned_cols=78 Identities=15% Similarity=0.185 Sum_probs=73.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
.|||||||.-.+|+.-|.+-|=.+ |.|..++|-.|. +-||||||||+-.|.|++||.-+| +.++-||.|+||-
T Consensus 11 rtlYVGGladeVtekvLhaAFIPF---GDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMn-esEL~GrtirVN~ 86 (298)
T KOG0111|consen 11 RTLYVGGLADEVTEKVLHAAFIPF---GDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMN-ESELFGRTIRVNL 86 (298)
T ss_pred eeEEeccchHHHHHHHHHhccccc---cchhhcccccchhcccccceeEEEeeccchhHHHhhcCc-hhhhcceeEEEee
Confidence 469999999999999999999999 999999999999 799999999999999999999998 7899999999999
Q ss_pred CCCCC
Q 035741 80 AKRRT 84 (890)
Q Consensus 80 a~~di 84 (890)
|+|.-
T Consensus 87 AkP~k 91 (298)
T KOG0111|consen 87 AKPEK 91 (298)
T ss_pred cCCcc
Confidence 87644
No 39
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.61 E-value=7.1e-08 Score=101.72 Aligned_cols=86 Identities=14% Similarity=0.183 Sum_probs=76.8
Q ss_pred EEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCC
Q 035741 5 IMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAK 81 (890)
Q Consensus 5 i~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~ 81 (890)
|-|-=||.++|+||++.+|.+. |+|.|||++.|+ +|=|||||-.-+.+.|++||.-+| ||.+....+||+-|+
T Consensus 44 LIvNYLPQ~MTqdE~rSLF~Si---GeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlN-GLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 44 LIVNYLPQNMTQDELRSLFGSI---GEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLN-GLRLQNKTIKVSYAR 119 (360)
T ss_pred eeeeecccccCHHHHHHHhhcc---cceeeeeeeeccccccccccceeeecChHHHHHHHhhhc-ceeeccceEEEEecc
Confidence 7788899999999999999999 999999999999 699999999999999999999998 899999999999865
Q ss_pred CCCCCCCCCCccccccCCcEEEE
Q 035741 82 RRTPHFAKRTPHYKLGGDLKLNF 104 (890)
Q Consensus 82 ~di~p~rp~~~~~~~~~~~~~~~ 104 (890)
|- ...+. |+-|++
T Consensus 120 PS---------s~~Ik-~aNLYv 132 (360)
T KOG0145|consen 120 PS---------SDSIK-DANLYV 132 (360)
T ss_pred CC---------hhhhc-ccceEE
Confidence 32 33455 666665
No 40
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.60 E-value=5.9e-08 Score=98.14 Aligned_cols=76 Identities=16% Similarity=0.228 Sum_probs=70.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCCC
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAKR 82 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~~ 82 (890)
.+|||||||..+-+.|++++|-.| |.|..+++...+++=.|+||||++...|+-||-.-+ |.+|+|..|+|.-++-
T Consensus 7 ~~iyvGNLP~diRekeieDlFyKy---g~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRd-GYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 7 RRIYVGNLPGDIREKEIEDLFYKY---GRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRD-GYDYDGCRLRVEFPRG 82 (241)
T ss_pred ceEEecCCCcchhhccHHHHHhhh---cceEEEEeccCCCCCCeeEEEecCccchhhhhhccc-ccccCcceEEEEeccC
Confidence 579999999999999999999999 999999999888888999999999999999998876 8999999999987543
No 41
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.52 E-value=3.1e-07 Score=75.80 Aligned_cols=55 Identities=25% Similarity=0.318 Sum_probs=49.3
Q ss_pred HHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 19 VKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 19 l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
|+++|++| |+|..+++...+ +|+|||||.+.++|+.|++.+| |..++|+.|+|.-
T Consensus 1 L~~~f~~f---G~V~~i~~~~~~--~~~a~V~f~~~~~A~~a~~~l~-~~~~~g~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKF---GEVKKIKIFKKK--RGFAFVEFASVEDAQKAIEQLN-GRQFNGRPLKVSY 55 (56)
T ss_dssp HHHHHTTT---S-EEEEEEETTS--TTEEEEEESSHHHHHHHHHHHT-TSEETTEEEEEEE
T ss_pred ChHHhCCc---ccEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhC-CCEECCcEEEEEE
Confidence 68899999 999999997554 7999999999999999999998 7999999999974
No 42
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.50 E-value=2.6e-07 Score=103.59 Aligned_cols=75 Identities=13% Similarity=0.061 Sum_probs=67.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
+.-||||.||.++.|+||..|||+. |.|+.+.|.+|+ .+||||||.|.+.++|+.||..+|+.--=-|+.|+|+
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEki---G~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKI---GKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhc---cceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 3459999999999999999999999 999999999998 6999999999999999999999995222368888876
Q ss_pred c
Q 035741 79 S 79 (890)
Q Consensus 79 e 79 (890)
-
T Consensus 160 ~ 160 (506)
T KOG0117|consen 160 V 160 (506)
T ss_pred E
Confidence 4
No 43
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.48 E-value=2.7e-07 Score=105.38 Aligned_cols=77 Identities=22% Similarity=0.236 Sum_probs=72.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHh----cC-ccccCc
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLAR----ER-LSYGNS 73 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~----~~-~~~~gr 73 (890)
++|++|.||||.+|+++|++.|.+| |.|-.+.|+-|+ +|+|=|||.|.+..+|+.+|+.+. .| ..+.||
T Consensus 292 ~~tVFvRNL~fD~tEEel~~~fskF---G~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR 368 (678)
T KOG0127|consen 292 GKTVFVRNLPFDTTEEELKEHFSKF---GEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGR 368 (678)
T ss_pred cceEEEecCCccccHHHHHHHHHhh---ccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEecc
Confidence 5899999999999999999999999 999999999999 799999999999999999999983 24 889999
Q ss_pred eeEEecCC
Q 035741 74 FLKASSAK 81 (890)
Q Consensus 74 ~L~v~ea~ 81 (890)
-|+|+.|=
T Consensus 369 ~Lkv~~Av 376 (678)
T KOG0127|consen 369 LLKVTLAV 376 (678)
T ss_pred EEeeeecc
Confidence 99999863
No 44
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=1.9e-07 Score=99.26 Aligned_cols=152 Identities=14% Similarity=0.173 Sum_probs=116.7
Q ss_pred EEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCC
Q 035741 5 IMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAK 81 (890)
Q Consensus 5 i~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~ 81 (890)
+.||-|...++-+.||+-|..| |+|..+|||.|- +|+|||||-|-..++|+.||..+| |.|+|+|.++-|=|-
T Consensus 65 vfvgdls~eI~~e~lr~aF~pF---GevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~Mn-GqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 65 VFVGDLSPEIDNEKLREAFAPF---GEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMN-GQWLGRRTIRTNWAT 140 (321)
T ss_pred EEehhcchhcchHHHHHHhccc---cccccceEeecccCCcccceeEEeccchHHHHHHHHHhC-Ceeeccceeeccccc
Confidence 6899999999999999999999 999999999999 899999999999999999999998 899999999999874
Q ss_pred CCCCCCCCCCccccccCCcEEEEeeccccceeEEeecccCceeEeccCceeEEEEeeecCeeeEEEecchhhhhhhccCC
Q 035741 82 RRTPHFAKRTPHYKLGGDLKLNFGCQISKDKFSVFWSQENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRP 161 (890)
Q Consensus 82 ~di~p~rp~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 161 (890)
++ | ..+. +.. +.||+|..-
T Consensus 141 RK-----p----~e~n-~~~----------------------------------------------ltfdeV~NQ----- 159 (321)
T KOG0148|consen 141 RK-----P----SEMN-GKP----------------------------------------------LTFDEVYNQ----- 159 (321)
T ss_pred cC-----c----cccC-CCC----------------------------------------------ccHHHHhcc-----
Confidence 32 2 2333 110 678877641
Q ss_pred CCCcccccceeeEEEecCCCCccchhhhhccccccccceeEe-ecCCcccccchhhHHHHHHHHHH
Q 035741 162 SGHSVSIGQSSAICLELPSRALIPKALKDFFHYKESLVQFTL-LPGFVFSCNSDLNQDGKHALEML 226 (890)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~le~~ 226 (890)
+|=-.+|.+|=-++.++.--.+.+.|..|-.+..-.+. ..|..| ...+--..+.+|+..+
T Consensus 160 ----ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qGYaF-VrF~tkEaAahAIv~m 220 (321)
T KOG0148|consen 160 ----SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQGYAF-VRFETKEAAAHAIVQM 220 (321)
T ss_pred ----CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecccceEE-EEecchhhHHHHHHHh
Confidence 22335788999999888888888888888777433333 466666 3333334445555555
No 45
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.47 E-value=5e-07 Score=84.14 Aligned_cols=72 Identities=14% Similarity=0.229 Sum_probs=69.0
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 4 MIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 4 ti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
-|||.|||+++|.||+-++|.+| |+|.-+.|-.++..||-|||-.++-..|..|..-++ |..+.+++|.|--
T Consensus 20 iLyirNLp~~ITseemydlFGky---g~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhls-g~n~~~ryl~vly 91 (124)
T KOG0114|consen 20 ILYIRNLPFKITSEEMYDLFGKY---GTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLS-GYNVDNRYLVVLY 91 (124)
T ss_pred eEEEecCCccccHHHHHHHhhcc---cceEEEEecCccCcCceEEEEehHhhhHHHHHHHhc-ccccCCceEEEEe
Confidence 38999999999999999999999 999999999999999999999999999999999998 8999999999964
No 46
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=4.6e-07 Score=102.60 Aligned_cols=77 Identities=14% Similarity=0.227 Sum_probs=72.7
Q ss_pred EEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC-CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCCCC
Q 035741 5 IMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK-GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAKRR 83 (890)
Q Consensus 5 i~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr-~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~~d 83 (890)
|||-||+-+++-++|.++|+.+ |+|.||||.+|+ .|+|| ||||+++++|.+||..+| |..+.|..+-|-.+.++
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~---g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~n-g~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEF---GNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLN-GMLLNGKKIYVGLFERK 153 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhh---cCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhc-CcccCCCeeEEeeccch
Confidence 7999999999999999999999 999999999999 89999 999999999999999998 79999999999888776
Q ss_pred CCC
Q 035741 84 TPH 86 (890)
Q Consensus 84 i~p 86 (890)
...
T Consensus 154 ~er 156 (369)
T KOG0123|consen 154 EER 156 (369)
T ss_pred hhh
Confidence 654
No 47
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.41 E-value=3.6e-07 Score=104.46 Aligned_cols=79 Identities=18% Similarity=0.266 Sum_probs=74.7
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
+.||+|++||++++.++|.+||+.. |-|--+-++++. .+||||||.|.=.+.++.|++.++ +.-|+||.|+|.
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~v---GPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~-~~kf~Gr~l~v~ 80 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYV---GPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETE-QSKFEGRILNVD 80 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcc---cCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhh-cCcccceecccc
Confidence 3899999999999999999999999 999999999999 589999999999999999999998 689999999999
Q ss_pred cCCCCC
Q 035741 79 SAKRRT 84 (890)
Q Consensus 79 ea~~di 84 (890)
.|.++.
T Consensus 81 ~A~~R~ 86 (678)
T KOG0127|consen 81 PAKKRA 86 (678)
T ss_pred cccccc
Confidence 998776
No 48
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.39 E-value=3.8e-08 Score=99.41 Aligned_cols=77 Identities=8% Similarity=0.097 Sum_probs=67.9
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecC
Q 035741 4 MIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSA 80 (890)
Q Consensus 4 ti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea 80 (890)
-||||||||..||.||...|++| |+|..|.++.|+ +|+||+|.-.++...--.|+.-+| |.-++||.|+|--.
T Consensus 37 ~Iyiggl~~~LtEgDil~VFSqy---Ge~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~N-Giki~gRtirVDHv 112 (219)
T KOG0126|consen 37 YIYIGGLPYELTEGDILCVFSQY---GEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLN-GIKILGRTIRVDHV 112 (219)
T ss_pred EEEECCCcccccCCcEEEEeecc---CceEEEEEEecCCCCcccceEEEEecCccceEEEEeccC-CceecceeEEeeec
Confidence 49999999999999999999999 999999999999 799999999999886666666565 89999999999865
Q ss_pred CCCC
Q 035741 81 KRRT 84 (890)
Q Consensus 81 ~~di 84 (890)
...-
T Consensus 113 ~~Yk 116 (219)
T KOG0126|consen 113 SNYK 116 (219)
T ss_pred cccc
Confidence 4433
No 49
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.38 E-value=9.9e-07 Score=95.00 Aligned_cols=87 Identities=16% Similarity=0.224 Sum_probs=79.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
+||+|+-|+|.++|+.|+.-|+.| |.|.-+.|+.|+ +|||||||||++..+..+|-..+. |+.++|+.+.|--
T Consensus 102 ~TLFv~RLnydT~EskLrreF~~Y---G~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~ad-G~~Idgrri~VDv 177 (335)
T KOG0113|consen 102 KTLFVARLNYDTSESKLRREFEKY---GPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDAD-GIKIDGRRILVDV 177 (335)
T ss_pred ceeeeeeccccccHHHHHHHHHhc---CcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhcc-CceecCcEEEEEe
Confidence 799999999999999999999999 999999999998 799999999999999999999887 8999999999998
Q ss_pred CCCCCCC-CCCCCcccccc
Q 035741 80 AKRRTPH-FAKRTPHYKLG 97 (890)
Q Consensus 80 a~~di~p-~rp~~~~~~~~ 97 (890)
-..+.++ |.|+ ||.
T Consensus 178 ERgRTvkgW~PR----RLG 192 (335)
T KOG0113|consen 178 ERGRTVKGWLPR----RLG 192 (335)
T ss_pred cccccccccccc----ccc
Confidence 8888877 3344 565
No 50
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.38 E-value=3.9e-07 Score=97.74 Aligned_cols=75 Identities=12% Similarity=0.173 Sum_probs=70.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecC
Q 035741 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSA 80 (890)
Q Consensus 1 M~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea 80 (890)
|.-+|+|||||-.+++.||+.+||+| |+|..|.|| +-||||-|++..+|+-||.-|+ |.-+.|-+++|..+
T Consensus 1 ~~~KLFIGNLp~~~~~~elr~lFe~y---gkVlECDIv-----KNYgFVHiEdktaaedairNLh-gYtLhg~nInVeaS 71 (346)
T KOG0109|consen 1 MPVKLFIGNLPREATEQELRSLFEQY---GKVLECDIV-----KNYGFVHIEDKTAAEDAIRNLH-GYTLHGVNINVEAS 71 (346)
T ss_pred CccchhccCCCcccchHHHHHHHHhh---CceEeeeee-----cccceEEeecccccHHHHhhcc-cceecceEEEEEec
Confidence 67789999999999999999999999 999999999 5799999999999999999887 89999999999988
Q ss_pred CCCC
Q 035741 81 KRRT 84 (890)
Q Consensus 81 ~~di 84 (890)
+-+-
T Consensus 72 ksKs 75 (346)
T KOG0109|consen 72 KSKS 75 (346)
T ss_pred cccC
Confidence 8774
No 51
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.37 E-value=7e-07 Score=85.98 Aligned_cols=74 Identities=8% Similarity=0.156 Sum_probs=68.3
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
+.|||||||++.+|||.+-++|+.. |+|--|-+--|| .+=||-||||-+.++|+.|+.-+| |..+..|.|++.
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~c---G~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryis-gtrLddr~ir~D 111 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSKC---GDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYIS-GTRLDDRPIRID 111 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHhc---cchheeEeccccCCcCccceEEEEEecchhHHHHHHHhc-cCcccccceeee
Confidence 5689999999999999999999999 999999888899 588999999999999999999998 788888888875
Q ss_pred c
Q 035741 79 S 79 (890)
Q Consensus 79 e 79 (890)
-
T Consensus 112 ~ 112 (153)
T KOG0121|consen 112 W 112 (153)
T ss_pred c
Confidence 3
No 52
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=1e-06 Score=93.75 Aligned_cols=72 Identities=21% Similarity=0.229 Sum_probs=66.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCC
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAK 81 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~ 81 (890)
.|+|||||+...|++++++.|+.| |.+..|.|. +-+||+||-|++.|+|..||-.+| +.+.+|...|-.=-+
T Consensus 165 tsVY~G~I~~~lte~~mr~~Fs~f---G~I~EVRvF---k~qGYaFVrF~tkEaAahAIv~mN-ntei~G~~VkCsWGK 236 (321)
T KOG0148|consen 165 TSVYVGNIASGLTEDLMRQTFSPF---GPIQEVRVF---KDQGYAFVRFETKEAAAHAIVQMN-NTEIGGQLVRCSWGK 236 (321)
T ss_pred ceEEeCCcCccccHHHHHHhcccC---CcceEEEEe---cccceEEEEecchhhHHHHHHHhc-CceeCceEEEEeccc
Confidence 479999999999999999999999 999999999 556999999999999999999998 799999999986443
No 53
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.28 E-value=1.9e-06 Score=96.29 Aligned_cols=76 Identities=17% Similarity=0.161 Sum_probs=71.8
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCC
Q 035741 4 MIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAK 81 (890)
Q Consensus 4 ti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~ 81 (890)
.+|+.||||.+-=.+||++|.+.+ |+|.=|++..|+ ++||-|.|||.+.|.+++|.+.+| ..+..||.|+|.|-+
T Consensus 46 ~vfItNIpyd~rWqdLKdLvrekv--Gev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~ln-k~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 46 SVFITNIPYDYRWQDLKDLVREKV--GEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLN-KYEVNGRELVVKEDH 122 (608)
T ss_pred eEEEecCcchhhhHhHHHHHHHhc--CceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhh-hccccCceEEEeccC
Confidence 489999999999999999999987 899999999999 899999999999999999999999 799999999999943
Q ss_pred C
Q 035741 82 R 82 (890)
Q Consensus 82 ~ 82 (890)
+
T Consensus 123 d 123 (608)
T KOG4212|consen 123 D 123 (608)
T ss_pred c
Confidence 3
No 54
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.27 E-value=1.6e-06 Score=97.07 Aligned_cols=93 Identities=19% Similarity=0.193 Sum_probs=77.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcC--ccccCceeEE
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARER--LSYGNSFLKA 77 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~--~~~~gr~L~v 77 (890)
-++|||-+|-++||+||+++||+| |.|+.|.|+.|| .|||.-||-|-+.++|.+|+.++.+- +.=+.+.+.|
T Consensus 35 vKlfVgqIprt~sE~dlr~lFe~y---g~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 35 VKLFVGQIPRTASEKDLRELFEKY---GNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred hhheeccCCccccHHHHHHHHHHh---CceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 368999999999999999999999 999999999999 59999999999999999999999753 4556678888
Q ss_pred ecCCCCCCCCCCCCccccccCCcEEEEeec
Q 035741 78 SSAKRRTPHFAKRTPHYKLGGDLKLNFGCQ 107 (890)
Q Consensus 78 ~ea~~di~p~rp~~~~~~~~~~~~~~~g~~ 107 (890)
..|+-..- | -.+ +-+|.+|+.
T Consensus 112 k~Ad~E~e--r------~~~-e~KLFvg~l 132 (510)
T KOG0144|consen 112 KYADGERE--R------IVE-ERKLFVGML 132 (510)
T ss_pred cccchhhh--c------ccc-chhhhhhhc
Confidence 87754331 1 034 677888874
No 55
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.21 E-value=1e-06 Score=96.57 Aligned_cols=73 Identities=12% Similarity=0.184 Sum_probs=70.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
+..||||.++|...++.++.-|..| |-+-|+.+.-|- +-+||||||++-.|+|+.|.+.+| |..+|||+|||+
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PF---GPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMN-g~mlGGRNiKVg 188 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPF---GPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMN-GQMLGGRNIKVG 188 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCC---CCcceeecccccccccccceEEEEEeCcHHHHHHHHHhc-cccccCcccccc
Confidence 3579999999999999999999999 999999999998 799999999999999999999999 899999999999
No 56
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.19 E-value=2.8e-06 Score=100.05 Aligned_cols=73 Identities=16% Similarity=0.238 Sum_probs=69.2
Q ss_pred EEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCC------CCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 5 IMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKG------SRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 5 i~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~------sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
|||.|++|+.|.+++...|... |+|.++.|..-++ |.|||||||.+.+.|++|+.+++ |..+.|+.|.|.
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~---G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lq-gtvldGH~l~lk 593 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQ---GTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQ-GTVLDGHKLELK 593 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhc---CeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhc-CceecCceEEEE
Confidence 9999999999999999999998 9999999999883 56999999999999999999998 899999999999
Q ss_pred cCC
Q 035741 79 SAK 81 (890)
Q Consensus 79 ea~ 81 (890)
-+.
T Consensus 594 ~S~ 596 (725)
T KOG0110|consen 594 ISE 596 (725)
T ss_pred ecc
Confidence 876
No 57
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.12 E-value=4.9e-06 Score=93.69 Aligned_cols=73 Identities=21% Similarity=0.210 Sum_probs=67.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCCC
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAKR 82 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~~ 82 (890)
|-|||.||+-++|+|-|+++|++| |.|..||.+ |-||||-|++.++|-+|+.-+| |.++.|+.|-|.-|+|
T Consensus 260 KvLYVRNL~~~tTeE~lk~~F~~~---G~veRVkk~-----rDYaFVHf~eR~davkAm~~~n-gkeldG~~iEvtLAKP 330 (506)
T KOG0117|consen 260 KVLYVRNLMESTTEETLKKLFNEF---GKVERVKKP-----RDYAFVHFAEREDAVKAMKETN-GKELDGSPIEVTLAKP 330 (506)
T ss_pred eeeeeeccchhhhHHHHHHHHHhc---cceEEeecc-----cceeEEeecchHHHHHHHHHhc-CceecCceEEEEecCC
Confidence 459999999999999999999999 999999977 5599999999999999999998 8999999999999876
Q ss_pred CC
Q 035741 83 RT 84 (890)
Q Consensus 83 di 84 (890)
--
T Consensus 331 ~~ 332 (506)
T KOG0117|consen 331 VD 332 (506)
T ss_pred hh
Confidence 43
No 58
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.11 E-value=2.9e-06 Score=93.80 Aligned_cols=80 Identities=18% Similarity=0.295 Sum_probs=72.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
.|+|.||++|.++++++++++|+++ |.|.-+.+..|+ ++||||||+|.++++..++... .-..+.|+.+.|.
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~---g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~--~f~~~~gk~vevk 171 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQF---GKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ--KFHDFNGKKVEVK 171 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhcc---ceeEeeEEeecccccccccceeeEeccccccceeccc--ceeeecCceeeEe
Confidence 3689999999999999999999999 999999999999 7999999999999988777666 3578999999999
Q ss_pred cCCCCCCC
Q 035741 79 SAKRRTPH 86 (890)
Q Consensus 79 ea~~di~p 86 (890)
-|-|+-+=
T Consensus 172 rA~pk~~~ 179 (311)
T KOG4205|consen 172 RAIPKEVM 179 (311)
T ss_pred eccchhhc
Confidence 99777653
No 59
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.11 E-value=4e-06 Score=81.45 Aligned_cols=77 Identities=12% Similarity=0.183 Sum_probs=72.0
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCC---CCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecC
Q 035741 4 MIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKG---SRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSA 80 (890)
Q Consensus 4 ti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~---sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea 80 (890)
-|.|.|+--.+|++++.+.|..| |.|-.+.+--||| .+|||.||+++.++|++|++.+| |+++.|.++.|.-+
T Consensus 74 Ii~VtgvHeEatEedi~d~F~dy---GeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~N-g~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 74 IIFVTGVHEEATEEDIHDKFADY---GEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALN-GAELLGQNVSVDWC 149 (170)
T ss_pred EEEEeccCcchhHHHHHHHHhhc---ccccceeeccccccccccceeeeehHhHHHHHHHHHhcc-chhhhCCceeEEEE
Confidence 38899999999999999999999 9999999999994 89999999999999999999998 89999999999877
Q ss_pred CCCC
Q 035741 81 KRRT 84 (890)
Q Consensus 81 ~~di 84 (890)
.-.=
T Consensus 150 Fv~g 153 (170)
T KOG0130|consen 150 FVKG 153 (170)
T ss_pred EecC
Confidence 6554
No 60
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.10 E-value=2.7e-06 Score=97.85 Aligned_cols=78 Identities=13% Similarity=0.214 Sum_probs=72.7
Q ss_pred EEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCC
Q 035741 5 IMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAK 81 (890)
Q Consensus 5 i~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~ 81 (890)
+|||||=++.||+.|+..||.+ |.|..|.+..|- +++||||+||-..+.|.+|...+| |+++-||.++|.-..
T Consensus 281 l~vgnLHfNite~~lr~ifepf---g~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~ln-gfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPF---GKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLN-GFELAGRLIKVSVVT 356 (549)
T ss_pred hhhcccccCchHHHHhhhccCc---ccceeeeeccccccccccCcceEEEecHHHHHHHHHHhc-cceecCceEEEEEee
Confidence 8999999999999999999999 999999999995 799999999999999999999998 699999999999876
Q ss_pred CCCCC
Q 035741 82 RRTPH 86 (890)
Q Consensus 82 ~di~p 86 (890)
.++-+
T Consensus 357 ~r~~~ 361 (549)
T KOG0147|consen 357 ERVDT 361 (549)
T ss_pred eeccc
Confidence 66643
No 61
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.09 E-value=2.3e-06 Score=94.54 Aligned_cols=80 Identities=18% Similarity=0.283 Sum_probs=69.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
..+|.||+|+|.+|+|.|++.|.+| |+|..+.|..|+ ||||||||+|++.+.-.+++.. ....+.||.+-+-
T Consensus 6 ~~KlfiGgisw~ttee~Lr~yf~~~---Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~--~~h~~dgr~ve~k 80 (311)
T KOG4205|consen 6 SGKLFIGGLSWETTEESLREYFSQF---GEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA--RTHKLDGRSVEPK 80 (311)
T ss_pred CcceeecCcCccccHHHHHHHhccc---CceeeEEEeccCCCCCcccccceecCCCcchheeecc--cccccCCccccce
Confidence 3579999999999999999999999 999999999999 8999999999988877766666 3467999999888
Q ss_pred cCCCCCCC
Q 035741 79 SAKRRTPH 86 (890)
Q Consensus 79 ea~~di~p 86 (890)
+|-++--.
T Consensus 81 ~av~r~~~ 88 (311)
T KOG4205|consen 81 RAVSREDQ 88 (311)
T ss_pred eccCcccc
Confidence 88766644
No 62
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.06 E-value=5.2e-06 Score=88.24 Aligned_cols=78 Identities=13% Similarity=0.176 Sum_probs=72.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
+-+|+++.||...++.||-..|-.| |.|.|.||..|| .|+-||||-|++...|++||.++| |.-.|=..|||.
T Consensus 285 GCNlFIYHLPQEFgDaEliQmF~PF---GhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMN-GFQIGMKRLKVQ 360 (371)
T KOG0146|consen 285 GCNLFIYHLPQEFGDAELIQMFLPF---GHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMN-GFQIGMKRLKVQ 360 (371)
T ss_pred cceEEEEeCchhhccHHHHHHhccc---cceeeeeeeehhccccccceeeEecCCchhHHHHHHHhc-chhhhhhhhhhh
Confidence 4589999999999999999999999 999999999999 799999999999999999999999 899999999998
Q ss_pred cCCCC
Q 035741 79 SAKRR 83 (890)
Q Consensus 79 ea~~d 83 (890)
--+|+
T Consensus 361 LKRPk 365 (371)
T KOG0146|consen 361 LKRPK 365 (371)
T ss_pred hcCcc
Confidence 64444
No 63
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=97.98 E-value=1.7e-05 Score=82.09 Aligned_cols=76 Identities=17% Similarity=0.213 Sum_probs=69.0
Q ss_pred EEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCC
Q 035741 5 IMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAK 81 (890)
Q Consensus 5 i~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~ 81 (890)
+||+.+|+..-+.++..+|.++- |+|.-+.+...| .|||||||||++.+.|.-|.+-+| +..|+|+-|.+.-+.
T Consensus 52 ~~~~~~p~g~~e~~~~~~~~q~~--g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMN-NYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 52 VYVDHIPHGFFETEILNYFRQFG--GTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMN-NYLLMEHLLECHVMP 128 (214)
T ss_pred eeecccccchhHHHHhhhhhhcC--CeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhh-hhhhhhheeeeEEeC
Confidence 68999999999999999999993 888888886666 699999999999999999999998 699999999999877
Q ss_pred CC
Q 035741 82 RR 83 (890)
Q Consensus 82 ~d 83 (890)
|.
T Consensus 129 pe 130 (214)
T KOG4208|consen 129 PE 130 (214)
T ss_pred ch
Confidence 66
No 64
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.95 E-value=1.6e-05 Score=91.26 Aligned_cols=80 Identities=20% Similarity=0.277 Sum_probs=74.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
+.++.|++|+.++-|.+|+++|+.| |.|..+||+|.- ..|-||||.|.+.++|.+.|+-|. +.++-||-|.|.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKy---GKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLH-rTELHGrmISVE 480 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKY---GKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLH-RTELHGRMISVE 480 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHh---cceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhh-hhhhcceeeeee
Confidence 5689999999999999999999999 999999999987 589999999999999999999998 899999999999
Q ss_pred cCCCCCC
Q 035741 79 SAKRRTP 85 (890)
Q Consensus 79 ea~~di~ 85 (890)
-|+--+.
T Consensus 481 kaKNEp~ 487 (940)
T KOG4661|consen 481 KAKNEPG 487 (940)
T ss_pred ecccCcc
Confidence 8887764
No 65
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.90 E-value=2.7e-05 Score=81.62 Aligned_cols=81 Identities=12% Similarity=0.158 Sum_probs=75.2
Q ss_pred eEEEeCCCCCCCHHHHHH----HHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 4 MIMLYGFASLASPKAVKE----FLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 4 ti~Vgnlp~~~t~~~l~~----~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
||||-||+=....+||+. +|++| |+|..|......+.||=|||-|.+.++|..|...++ |..|-|.++++--
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqf---G~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~-gfpFygK~mriqy 86 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQF---GKILDISAFKTPKMRGQAFVVFKETEAASAALRALQ-GFPFYGKPMRIQY 86 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhh---CCeEEEEecCCCCccCceEEEecChhHHHHHHHHhc-CCcccCchhheec
Confidence 899999999999999999 99999 999999998888999999999999999999999998 8999999999998
Q ss_pred C--CCCCCCCCC
Q 035741 80 A--KRRTPHFAK 89 (890)
Q Consensus 80 a--~~di~p~rp 89 (890)
| +-||+- |+
T Consensus 87 A~s~sdii~-~~ 97 (221)
T KOG4206|consen 87 AKSDSDIIA-QA 97 (221)
T ss_pred ccCccchhh-cc
Confidence 8 556776 54
No 66
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=97.89 E-value=1.2e-05 Score=90.38 Aligned_cols=79 Identities=16% Similarity=0.129 Sum_probs=70.8
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCc--cccCceeEEe
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERL--SYGNSFLKAS 78 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~--~~~gr~L~v~ 78 (890)
.+||||-|+-.+||.||++.|++| |.|..|.|..|- .|||.|||.|++.|-|.+||..+|+.. +=....|.|.
T Consensus 125 ~KLFvg~lsK~~te~evr~iFs~f---G~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 125 RKLFVGMLSKQCTENEVREIFSRF---GHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred hhhhhhhccccccHHHHHHHHHhh---CccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 468999999999999999999999 999999999988 699999999999999999999999423 3445789999
Q ss_pred cCCCCC
Q 035741 79 SAKRRT 84 (890)
Q Consensus 79 ea~~di 84 (890)
-|++.-
T Consensus 202 FADtqk 207 (510)
T KOG0144|consen 202 FADTQK 207 (510)
T ss_pred ecccCC
Confidence 998765
No 67
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=1.3e-05 Score=90.87 Aligned_cols=80 Identities=16% Similarity=0.227 Sum_probs=74.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecC
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSA 80 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea 80 (890)
.+|||.|++-.++.+.|++.|+.+ |+|++++|..+. +++|||||+|++.++|..|+..+| +...+|+.|.|..+
T Consensus 271 ~nl~vknld~~~~~e~L~~~f~~~---GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n-~~~i~~k~l~vav~ 346 (369)
T KOG0123|consen 271 ANLYVKNLDETLSDEKLRKIFSSF---GEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMN-GRLIGGKPLYVAVA 346 (369)
T ss_pred cccccccCccccchhHHHHHHhcc---cceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhC-hhhhcCCchhhhHH
Confidence 579999999999999999999999 999999999998 799999999999999999999998 79999999999988
Q ss_pred CCCCCC
Q 035741 81 KRRTPH 86 (890)
Q Consensus 81 ~~di~p 86 (890)
.+..-|
T Consensus 347 qr~~~r 352 (369)
T KOG0123|consen 347 QRKEDR 352 (369)
T ss_pred hhhccc
Confidence 755544
No 68
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.87 E-value=3.3e-05 Score=88.19 Aligned_cols=77 Identities=21% Similarity=0.295 Sum_probs=67.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC-CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCC
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK-GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAK 81 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr-~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~ 81 (890)
+-|++.+|||++|++||++||+.. +|..+++..+- |++|=|+|||++.|.++.|+.+ ++..++.|||-|-.+.
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~----~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alkk--dR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNC----GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKK--DRESMGHRYIEVFTAG 84 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcC----ceeEEEEeccCCCcCcceEEEeechHHHHHHHHh--hHHHhCCceEEEEccC
Confidence 458999999999999999999999 78887666554 8999999999999999999999 6789999999999886
Q ss_pred CCCC
Q 035741 82 RRTP 85 (890)
Q Consensus 82 ~di~ 85 (890)
.+..
T Consensus 85 ~~e~ 88 (510)
T KOG4211|consen 85 GAEA 88 (510)
T ss_pred Cccc
Confidence 5554
No 69
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=97.86 E-value=1.4e-05 Score=86.05 Aligned_cols=76 Identities=12% Similarity=0.119 Sum_probs=69.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCC
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAK 81 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~ 81 (890)
+.||.|||+..+.+.+||++.|++| |+|..++|+ |++|||-|+-.+.|..||..|| +.+|.|..|+|.-.-
T Consensus 78 stkl~vgNis~tctn~ElRa~fe~y---gpviecdiv-----kdy~fvh~d~~eda~~air~l~-~~~~~gk~m~vq~st 148 (346)
T KOG0109|consen 78 STKLHVGNISPTCTNQELRAKFEKY---GPVIECDIV-----KDYAFVHFDRAEDAVEAIRGLD-NTEFQGKRMHVQLST 148 (346)
T ss_pred ccccccCCCCccccCHHHhhhhccc---CCceeeeee-----cceeEEEEeeccchHHHHhccc-ccccccceeeeeeec
Confidence 3479999999999999999999999 999999998 7899999999999999999998 799999999999877
Q ss_pred CCCCC
Q 035741 82 RRTPH 86 (890)
Q Consensus 82 ~di~p 86 (890)
-++-+
T Consensus 149 srlrt 153 (346)
T KOG0109|consen 149 SRLRT 153 (346)
T ss_pred ccccc
Confidence 76644
No 70
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.85 E-value=2.5e-05 Score=85.87 Aligned_cols=75 Identities=20% Similarity=0.232 Sum_probs=67.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCC
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAK 81 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~ 81 (890)
.+|||||||--.+++.+|+++|.+| |++.++.|...+ |-|||+|+|.++|+.|.+.+-+.+...|+.|+|.=.+
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqy---Geirsi~~~~~~---~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQY---GEIRSIRILPRK---GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhc---CCeeeEEeeccc---ccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 3689999998899999999999999 999999999544 5899999999999999988766899999999998655
Q ss_pred C
Q 035741 82 R 82 (890)
Q Consensus 82 ~ 82 (890)
+
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 5
No 71
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=97.84 E-value=2.7e-05 Score=85.72 Aligned_cols=74 Identities=12% Similarity=0.278 Sum_probs=68.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
..|||..+-.+.+++|+|..||.| |.+..|++..+- +-|||||+||....+.+.||+-+| =.++||.+|+|-.
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAF---G~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMN-lFDLGGQyLRVGk 286 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAF---GEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN-LFDLGGQYLRVGK 286 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhh---cceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcc-hhhcccceEeccc
Confidence 369999999999999999999999 999999999887 689999999999999999999998 5799999999975
Q ss_pred C
Q 035741 80 A 80 (890)
Q Consensus 80 a 80 (890)
+
T Consensus 287 ~ 287 (544)
T KOG0124|consen 287 C 287 (544)
T ss_pred c
Confidence 4
No 72
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=97.83 E-value=3.3e-05 Score=91.81 Aligned_cols=70 Identities=11% Similarity=0.209 Sum_probs=61.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
+.||.||+||.++++.||.++||+| |.|.||.+| .+||.|||-|....+|..|+..++ ..-+.+..+|+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feef---GeiqSi~li---~~R~cAfI~M~~RqdA~kalqkl~-n~kv~~k~Iki~ 490 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEF---GEIQSIILI---PPRGCAFIKMVRRQDAEKALQKLS-NVKVADKTIKIA 490 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhc---ccceeEeec---cCCceeEEEEeehhHHHHHHHHHh-cccccceeeEEe
Confidence 5799999999999999999999999 999999999 799999999999999999999987 344555555443
No 73
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.75 E-value=4.5e-05 Score=87.48 Aligned_cols=75 Identities=17% Similarity=0.248 Sum_probs=65.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeee----cCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEE
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQ----NKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKA 77 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~----dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v 77 (890)
.-+|||.|||+++|.++|+++|..| |.|....|-. ++.. .||||+|.+.++++.||.+. -+..||+.|.|
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~F---G~Ik~~~I~vr~~~~~~~-~fgFV~f~~~~~~~~~i~As--p~~ig~~kl~V 361 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQF---GPIKEGGIQVRSPGGKNP-CFGFVEFENAAAVQNAIEAS--PLEIGGRKLNV 361 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhc---ccccccceEEeccCCCcC-ceEEEEEeecchhhhhhhcC--ccccCCeeEEE
Confidence 3469999999999999999999999 9998877655 2234 99999999999999999984 58999999999
Q ss_pred ecCCC
Q 035741 78 SSAKR 82 (890)
Q Consensus 78 ~ea~~ 82 (890)
-|=++
T Consensus 362 eek~~ 366 (419)
T KOG0116|consen 362 EEKRP 366 (419)
T ss_pred Eeccc
Confidence 98443
No 74
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.67 E-value=1.8e-05 Score=82.33 Aligned_cols=114 Identities=18% Similarity=0.148 Sum_probs=85.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 1 M~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
|-.||||+|+...|+++-|.++|=+. |-|+.|+|..++ +.+ ||||+|+++-....|+.|+| |...-++.+++.
T Consensus 8 ~drtl~v~n~~~~v~eelL~Elfiqa---GPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~n-g~~l~~~e~q~~ 82 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQA---GPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLEN-GDDLEEDEEQRT 82 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhcc---CceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcc-cchhccchhhcc
Confidence 56799999999999999999999999 999999999999 566 99999999999999999998 788778877775
Q ss_pred cCCCCCCCCCCCCccccccCCcEEEEeeccccceeEEeecccCceeEeccCce
Q 035741 79 SAKRRTPHFAKRTPHYKLGGDLKLNFGCQISKDKFSVFWSQENVSVKLCSDLR 131 (890)
Q Consensus 79 ea~~di~p~rp~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (890)
.- ----. -| ...|+. ..+-.+.|++.=.-++|+..---+.|
T Consensus 83 ~r-~G~sh-ap--ld~r~~--------~ei~~~v~s~a~p~~~~R~~~~~d~r 123 (267)
T KOG4454|consen 83 LR-CGNSH-AP--LDERVT--------EEILYEVFSQAGPIEGVRIPTDNDGR 123 (267)
T ss_pred cc-cCCCc-ch--hhhhcc--------hhhheeeecccCCCCCccccccccCC
Confidence 41 11111 11 122333 33444556666677788766555533
No 75
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.52 E-value=0.00024 Score=76.21 Aligned_cols=78 Identities=15% Similarity=0.123 Sum_probs=71.8
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecC
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSA 80 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea 80 (890)
.+|+|.|||+.++++||+++|+++ |.+.-+-|-.|+ +|-|=|-|-|+..+.|.+|+...| +...+|+.++++.+
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~---~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~-gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEF---GELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYN-GVALDGRPMKIEII 159 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHh---ccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhc-CcccCCceeeeEEe
Confidence 369999999999999999999999 899999999999 788999999999999999999999 69999999999987
Q ss_pred CCCC
Q 035741 81 KRRT 84 (890)
Q Consensus 81 ~~di 84 (890)
....
T Consensus 160 ~~~~ 163 (243)
T KOG0533|consen 160 SSPS 163 (243)
T ss_pred cCcc
Confidence 5544
No 76
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.50 E-value=9.3e-05 Score=87.59 Aligned_cols=79 Identities=16% Similarity=0.153 Sum_probs=71.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
.+|-|.|+||.|+-.||+.+|..| |.|.+|.|-.-. -+||||||+|-+...|..|+..+- ..-+.||.|.+--
T Consensus 614 tKIlVRNipFeAt~rEVr~LF~aF---GqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~-STHlyGRrLVLEw 689 (725)
T KOG0110|consen 614 TKILVRNIPFEATKREVRKLFTAF---GQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALG-STHLYGRRLVLEW 689 (725)
T ss_pred ceeeeeccchHHHHHHHHHHHhcc---cceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhc-ccceechhhheeh
Confidence 368899999999999999999999 999999987653 379999999999999999999887 7899999999988
Q ss_pred CCCCCC
Q 035741 80 AKRRTP 85 (890)
Q Consensus 80 a~~di~ 85 (890)
|+.|-.
T Consensus 690 A~~d~~ 695 (725)
T KOG0110|consen 690 AKSDNT 695 (725)
T ss_pred hccchH
Confidence 887764
No 77
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.35 E-value=0.00033 Score=78.95 Aligned_cols=70 Identities=16% Similarity=0.161 Sum_probs=65.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC-CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK-GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr-~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
-+|.|.|||++.|=+-|++=|.++ |.|..++| +.+ +||| .|-|.+.+.|+.|++++| +..+.||.++|+-
T Consensus 537 ~qIiirNlP~dfTWqmlrDKfre~---G~v~yadi-me~GkskG--VVrF~s~edAEra~a~Mn-gs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 537 CQIIIRNLPFDFTWQMLRDKFREI---GHVLYADI-MENGKSKG--VVRFFSPEDAERACALMN-GSRLDGRNIKVTY 607 (608)
T ss_pred cEEEEecCCccccHHHHHHHHHhc---cceehhhh-hccCCccc--eEEecCHHHHHHHHHHhc-cCcccCceeeeee
Confidence 469999999999999999999999 99999999 666 8998 999999999999999998 8999999999974
No 78
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.26 E-value=0.00022 Score=75.22 Aligned_cols=70 Identities=16% Similarity=0.149 Sum_probs=62.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecC
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSA 80 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea 80 (890)
+..+|||+||+.+.+++|..||-.| |.+..|.+. -|||||+|++..+|.-|+--+| +..|+|-.|.|--|
T Consensus 1 m~rv~vg~~~~~~~~~d~E~~f~~y---g~~~d~~mk-----~gf~fv~fed~rda~Dav~~l~-~~~l~~e~~vve~~ 70 (216)
T KOG0106|consen 1 MPRVYIGRLPYRARERDVERFFKGY---GKIPDADMK-----NGFGFVEFEDPRDADDAVHDLD-GKELCGERLVVEHA 70 (216)
T ss_pred CCceeecccCCccchhHHHHHHhhc---cccccceee-----cccceeccCchhhhhcccchhc-Cceecceeeeeecc
Confidence 3578999999999999999999999 999988886 3999999999999999999998 78888888555544
No 79
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=97.18 E-value=0.0005 Score=70.24 Aligned_cols=78 Identities=10% Similarity=0.144 Sum_probs=67.7
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEE-EeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEE
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGV-EVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKA 77 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~-~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v 77 (890)
+.+|+||||-..+.+.-|.+.|+.+ |...+. +|..|- .++|||||-|.+.|++.+|+..+| |.....|.++|
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsaf---G~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~n-gq~l~nr~itv 171 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAF---GVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMN-GQYLCNRPITV 171 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhc---cccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhc-cchhcCCceEE
Confidence 3478999999999999999999999 876553 566555 699999999999999999999998 79999999999
Q ss_pred ecCCCC
Q 035741 78 SSAKRR 83 (890)
Q Consensus 78 ~ea~~d 83 (890)
.-|...
T Consensus 172 ~ya~k~ 177 (203)
T KOG0131|consen 172 SYAFKK 177 (203)
T ss_pred EEEEec
Confidence 988543
No 80
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.14 E-value=0.00049 Score=73.60 Aligned_cols=79 Identities=15% Similarity=0.167 Sum_probs=72.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
.+.++|||+-+.+|.+++..-|+.+ |+|.-++|-.|+ .+|||++|+|.+.+.++.++. +| +-.+-|+.++|.
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~C---g~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~-gs~i~~~~i~vt 175 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESC---GGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LD-GSEIPGPAIEVT 175 (231)
T ss_pred CceEEEeccccccccchhhheeecc---CCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cC-Ccccccccceee
Confidence 3679999999999999999999999 999999999999 599999999999999999999 44 899999999999
Q ss_pred cCCCCCCC
Q 035741 79 SAKRRTPH 86 (890)
Q Consensus 79 ea~~di~p 86 (890)
-.+-.+ |
T Consensus 176 ~~r~~~-p 182 (231)
T KOG4209|consen 176 LKRTNV-P 182 (231)
T ss_pred eeeeec-C
Confidence 877774 5
No 81
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.87 E-value=0.0016 Score=74.76 Aligned_cols=74 Identities=18% Similarity=0.317 Sum_probs=61.1
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhccCCceEEE-EEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecC
Q 035741 4 MIMLYGFASLASPKAVKEFLEEHTGEGTVSG-VEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSA 80 (890)
Q Consensus 4 ti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s-~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea 80 (890)
.|++.+|||++|++|+.+||+.- --|.. +-+..|+ |+-|=|||||++.+.|+.|+.. .+-.++.|++-|-.+
T Consensus 105 vVRLRGLPfscte~dI~~FFaGL---~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r--hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 105 VVRLRGLPFSCTEEDIVEFFAGL---EIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR--HRENIGHRYIEVFRS 179 (510)
T ss_pred eEEecCCCccCcHHHHHHHhcCC---cccccceeeeccCCCCcccceEEEecCHHHHHHHHHH--HHHhhccceEEeehh
Confidence 48899999999999999999987 44554 4455666 6779999999999999999888 357899999998766
Q ss_pred CC
Q 035741 81 KR 82 (890)
Q Consensus 81 ~~ 82 (890)
..
T Consensus 180 s~ 181 (510)
T KOG4211|consen 180 SR 181 (510)
T ss_pred HH
Confidence 43
No 82
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=96.86 E-value=0.0015 Score=69.96 Aligned_cols=79 Identities=15% Similarity=0.169 Sum_probs=70.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcC--ccccCceeEEe
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARER--LSYGNSFLKAS 78 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~--~~~~gr~L~v~ 78 (890)
++|+||=|.-.-+||||+.+|..+ |.+..|.+...- .|+|-+||-|.+..+|++||..|.+. +.=-.+.|.|.
T Consensus 20 rklfvgml~kqq~e~dvrrlf~pf---G~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 20 RKLFVGMLNKQQSEDDVRRLFQPF---GNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred hhhhhhhhcccccHHHHHHHhccc---CCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 679999999999999999999999 999999998766 69999999999999999999999842 34456889999
Q ss_pred cCCCCC
Q 035741 79 SAKRRT 84 (890)
Q Consensus 79 ea~~di 84 (890)
-|+.|-
T Consensus 97 ~ADTdk 102 (371)
T KOG0146|consen 97 FADTDK 102 (371)
T ss_pred eccchH
Confidence 987765
No 83
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=96.75 E-value=0.0023 Score=75.96 Aligned_cols=77 Identities=10% Similarity=0.051 Sum_probs=71.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC------CCCceEEEEecCHHHHHHHHHHHhcCccccCce
Q 035741 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK------GSRAHAIVEFTTVEAADFIKCLARERLSYGNSF 74 (890)
Q Consensus 1 M~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr------~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~ 74 (890)
|.+++|||||+.+++++.|..-|..| |-|.|+||.-+| +.|--|||-|-+.+.|++|+.-++ |..+.++.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrf---gPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lq-g~iv~~~e 248 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRF---GPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQ-GIIVMEYE 248 (877)
T ss_pred cccceeeecCCccccHHHHHHHhccc---CcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhc-ceeeeeee
Confidence 56789999999999999999999999 999999999999 588899999999999999999998 89999999
Q ss_pred eEEecCC
Q 035741 75 LKASSAK 81 (890)
Q Consensus 75 L~v~ea~ 81 (890)
+|.-=++
T Consensus 249 ~K~gWgk 255 (877)
T KOG0151|consen 249 MKLGWGK 255 (877)
T ss_pred eeecccc
Confidence 9876553
No 84
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=96.66 E-value=0.0057 Score=64.41 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=60.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccC-CceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCcccc---Ccee
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTG-EGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYG---NSFL 75 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~-~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~---gr~L 75 (890)
.||+|+|||-++...||-.+|-.+-| +|.-. =.+++ -.+-+|||.|++...|.+|+..|| |..|+ ++.|
T Consensus 35 RTLFVSGLP~DvKpREiynLFR~f~GYEgslL---K~Tsk~~~~~~pvaFatF~s~q~A~aamnaLN-GvrFDpE~~stL 110 (284)
T KOG1457|consen 35 RTLFVSGLPNDVKPREIYNLFRRFHGYEGSLL---KYTSKGDQVCKPVAFATFTSHQFALAAMNALN-GVRFDPETGSTL 110 (284)
T ss_pred ceeeeccCCcccCHHHHHHHhccCCCccceee---eeccCCCccccceEEEEecchHHHHHHHHHhc-CeeeccccCcee
Confidence 58999999999999999999999976 44332 23344 255799999999999999999999 77765 6777
Q ss_pred EEecCCC
Q 035741 76 KASSAKR 82 (890)
Q Consensus 76 ~v~ea~~ 82 (890)
.+.-|+-
T Consensus 111 hiElAKS 117 (284)
T KOG1457|consen 111 HIELAKS 117 (284)
T ss_pred Eeeehhc
Confidence 7766543
No 85
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=96.55 E-value=0.0022 Score=74.75 Aligned_cols=68 Identities=15% Similarity=0.222 Sum_probs=63.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeE
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLK 76 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~ 76 (890)
.||-|-|||.++|.++|+..|+.| |+|-. |...+..||.-||+|=|-..|++|...+| +..+.|+.|+
T Consensus 76 ~~L~v~nl~~~Vsn~~L~~~f~~y---Geir~--ir~t~~~~~~~~v~FyDvR~A~~Alk~l~-~~~~~~~~~k 143 (549)
T KOG4660|consen 76 GTLVVFNLPRSVSNDTLLRIFGAY---GEIRE--IRETPNKRGIVFVEFYDVRDAERALKALN-RREIAGKRIK 143 (549)
T ss_pred ceEEEEecCCcCCHHHHHHHHHhh---cchhh--hhcccccCceEEEEEeehHhHHHHHHHHH-HHHhhhhhhc
Confidence 479999999999999999999999 99987 56666789999999999999999999998 8999999999
No 86
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.12 E-value=0.013 Score=68.08 Aligned_cols=66 Identities=14% Similarity=0.188 Sum_probs=60.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHHh-hccCCceEEEEEeeecC--C-CCceEEEEecCHHHHHHHHHHHhcCccccCceeEE
Q 035741 2 AKMIMLYGFASLASPKAVKEFLE-EHTGEGTVSGVEVGQNK--G-SRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKA 77 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~-~~~~~G~V~s~~i~~dr--~-sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v 77 (890)
-|||+||++|--.+|+||-.+|+ -| |.|.=|-|-+|- + ++|=|.|.|.+..+=-+||++ |+|.+
T Consensus 370 rrTVFVGgvprpl~A~eLA~imd~ly---GgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa---------rFvql 437 (520)
T KOG0129|consen 370 RRTVFVGGLPRPLTAEELAMIMEDLF---GGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA---------RFVQL 437 (520)
T ss_pred cceEEecCCCCcchHHHHHHHHHHhc---CceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh---------heEEE
Confidence 38999999999999999999999 77 999999999994 4 999999999999999999998 67777
Q ss_pred ec
Q 035741 78 SS 79 (890)
Q Consensus 78 ~e 79 (890)
.-
T Consensus 438 ~h 439 (520)
T KOG0129|consen 438 DH 439 (520)
T ss_pred ec
Confidence 64
No 87
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.0089 Score=66.39 Aligned_cols=71 Identities=11% Similarity=0.232 Sum_probs=61.0
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 4 MIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 4 ti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
-|+|--|..-+|.++|.-.|+.| |+|.+|+||.|+ -|=-+|||||++.+..++|-=.+.| .....|.+-|.
T Consensus 241 VLFVCKLNPVTtDeDLeiIFSrF---G~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdN-vLIDDrRIHVD 314 (479)
T KOG0415|consen 241 VLFVCKLNPVTTDEDLEIIFSRF---GKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDN-VLIDDRRIHVD 314 (479)
T ss_pred eEEEEecCCcccccchhhHHhhc---ccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcc-eeeccceEEee
Confidence 48899999999999999999999 999999999999 4889999999999999999988873 45555544443
No 88
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.00 E-value=0.0052 Score=71.97 Aligned_cols=77 Identities=18% Similarity=0.255 Sum_probs=72.6
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecC
Q 035741 4 MIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSA 80 (890)
Q Consensus 4 ti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea 80 (890)
+|+|||||...++++++++++.+ |..-+-+++.|. .|+||+|-|+.+..-...|++.+| |...|+..|.|.-|
T Consensus 291 ki~v~~lp~~l~~~q~~Ell~~f---g~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLn-Gm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 291 KIFVGGLPLYLTEDQVKELLDSF---GPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLN-GMQLGDKKLVVQRA 366 (500)
T ss_pred hhhhccCcCccCHHHHHHHHHhc---ccchhheeecccccccccceeeeeeeCCcchhhhhcccc-hhhhcCceeEeehh
Confidence 58999999999999999999999 999999999999 599999999999999999999998 89999999999988
Q ss_pred CCCC
Q 035741 81 KRRT 84 (890)
Q Consensus 81 ~~di 84 (890)
-++-
T Consensus 367 ~~g~ 370 (500)
T KOG0120|consen 367 IVGA 370 (500)
T ss_pred hccc
Confidence 6554
No 89
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=95.84 E-value=0.025 Score=62.98 Aligned_cols=77 Identities=12% Similarity=0.163 Sum_probs=68.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEE--------EEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccccC
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVS--------GVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYGN 72 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~--------s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~g 72 (890)
+.|||+|||..+|-+|+.++|+.. |-|- -||+-.+. ..+|=|.+-+--.++...|+.+++ +..+.|
T Consensus 135 t~VYVsgLP~DiT~dE~~~~~sKc---GiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilD-e~~~rg 210 (382)
T KOG1548|consen 135 TSVYVSGLPLDITVDEFAEVMSKC---GIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILD-EDELRG 210 (382)
T ss_pred ceEEecCCCCcccHHHHHHHHHhc---ceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhC-cccccC
Confidence 359999999999999999999999 7764 46777777 699999999999999999999998 789999
Q ss_pred ceeEEecCCCC
Q 035741 73 SFLKASSAKRR 83 (890)
Q Consensus 73 r~L~v~ea~~d 83 (890)
+.|+|..|+-.
T Consensus 211 ~~~rVerAkfq 221 (382)
T KOG1548|consen 211 KKLRVERAKFQ 221 (382)
T ss_pred cEEEEehhhhh
Confidence 99999987643
No 90
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=95.73 E-value=0.0054 Score=71.43 Aligned_cols=70 Identities=19% Similarity=0.236 Sum_probs=61.6
Q ss_pred EEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 5 IMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 5 i~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
+.+.-++..+++-+|.+||+.. |+|-.|.||+|| +|+|-|+|||-+.+.-..||+| .|+.++|-+|.|-.
T Consensus 182 vf~~qla~r~~pRdL~efFs~~---gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaL--sGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 182 VFCMQLARRNPPRDLEEFFSIV---GKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIAL--SGQRLLGVPVIVQL 254 (549)
T ss_pred HHHHHHhhcCCchhHHHHHHhh---cCcceeEeeccccchhhcceeEEEEecccchhhHhhh--cCCcccCceeEecc
Confidence 3344456678899999999999 999999999999 7999999999999999999977 58999999998854
No 91
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=95.67 E-value=0.0065 Score=67.09 Aligned_cols=75 Identities=16% Similarity=0.225 Sum_probs=65.3
Q ss_pred ceEE-EeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 3 KMIM-LYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 3 kti~-Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
.+++ |+|++++++.++|+.+|... |.|..+.+.+++ .++|||+|+|.+...+..++.. + .-..+|+++.+-
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~~---~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~ 259 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVSS---GEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-Q-TRSIGGRPLRLE 259 (285)
T ss_pred ccceeecccccccchHHHhhhccCc---CcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-c-cCcccCcccccc
Confidence 3677 99999999999999888888 999999999999 6999999999998877777766 3 678899999998
Q ss_pred cCCC
Q 035741 79 SAKR 82 (890)
Q Consensus 79 ea~~ 82 (890)
+.++
T Consensus 260 ~~~~ 263 (285)
T KOG4210|consen 260 EDEP 263 (285)
T ss_pred cCCC
Confidence 8543
No 92
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=95.51 E-value=0.066 Score=50.24 Aligned_cols=75 Identities=16% Similarity=0.058 Sum_probs=60.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
.||-+.|||...|.++|.+.++++ .+|+-.=+-+-.|- .++|||||-|.+.++|..-....++..|=....-||-
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~-~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc 79 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEH-FKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVC 79 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHh-ccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEE
Confidence 479999999999999999999998 57887778888887 4889999999999999988888874344333334443
No 93
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.39 E-value=0.018 Score=64.65 Aligned_cols=77 Identities=14% Similarity=0.204 Sum_probs=59.5
Q ss_pred EEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCCC
Q 035741 5 IMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAKR 82 (890)
Q Consensus 5 i~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~~ 82 (890)
|++.||||++|-+++.+||..+--.=.-..|.++-.. |+-|=|||||.++|.|.+|...-. .....+||+-|-.+..
T Consensus 283 vRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~h-k~~mk~RYiEvfp~S~ 361 (508)
T KOG1365|consen 283 VRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCH-KKLMKSRYIEVFPCSV 361 (508)
T ss_pred eEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHH-HhhcccceEEEeeccH
Confidence 8999999999999999999998322223345666555 788999999999999999888854 2334599998876543
No 94
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.30 E-value=0.022 Score=63.98 Aligned_cols=71 Identities=23% Similarity=0.271 Sum_probs=57.7
Q ss_pred EEEeCCCCCCCHHHHHHHHhhcc--CCceEEEEEeee-cCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEE
Q 035741 5 IMLYGFASLASPKAVKEFLEEHT--GEGTVSGVEVGQ-NKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKA 77 (890)
Q Consensus 5 i~Vgnlp~~~t~~~l~~~f~~~~--~~G~V~s~~i~~-dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v 77 (890)
|++.||||++|+.+|.+||...+ +.|++--+-|.. |-|+-|=|||.|+.++.|+.|+.. .+..+|-||+-+
T Consensus 164 vRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k--hrq~iGqRYIEl 237 (508)
T KOG1365|consen 164 VRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK--HRQNIGQRYIEL 237 (508)
T ss_pred EEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH--HHHHHhHHHHHH
Confidence 78899999999999999997544 556665555554 338999999999999999999888 457788888754
No 95
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=95.15 E-value=0.092 Score=59.70 Aligned_cols=77 Identities=13% Similarity=0.189 Sum_probs=66.7
Q ss_pred eEEEeCC-CCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCCC
Q 035741 4 MIMLYGF-ASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAKR 82 (890)
Q Consensus 4 ti~Vgnl-p~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~~ 82 (890)
.|-|.|+ +..+|.+.|-.+|.-| |+|..|||.-.++ -.|.|||.+...|+.|++.|+ |...-|+.|+|+..++
T Consensus 299 vllvsnln~~~VT~d~LftlFgvY---GdVqRVkil~nkk--d~ALIQmsd~~qAqLA~~hL~-g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 299 VLLVSNLNEEAVTPDVLFTLFGVY---GDVQRVKILYNKK--DNALIQMSDGQQAQLAMEHLE-GHKLYGKKLRVTLSKH 372 (492)
T ss_pred EEEEecCchhccchhHHHHHHhhh---cceEEEEeeecCC--cceeeeecchhHHHHHHHHhh-cceecCceEEEeeccC
Confidence 4667776 6789999999999999 9999999997765 789999999999999999998 6766679999998876
Q ss_pred CCCC
Q 035741 83 RTPH 86 (890)
Q Consensus 83 di~p 86 (890)
.-+-
T Consensus 373 ~~vq 376 (492)
T KOG1190|consen 373 TNVQ 376 (492)
T ss_pred cccc
Confidence 5543
No 96
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=94.55 E-value=0.037 Score=59.52 Aligned_cols=73 Identities=11% Similarity=0.044 Sum_probs=66.6
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecC
Q 035741 4 MIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSA 80 (890)
Q Consensus 4 ti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea 80 (890)
.|+-|.|...++.+-|-.-|..| =+-.-++++.|+ +|+|||||-|.+.+.+..|+.-+| |..+|.|.++++-.
T Consensus 192 RIfcgdlgNevnd~vl~raf~Kf---psf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~-gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 192 RIFCGDLGNEVNDDVLARAFKKF---PSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMN-GKYVGSRPIKLRKS 267 (290)
T ss_pred eeecccccccccHHHHHHHHHhc---cchhhccccccccccccccceeeeecCHHHHHHHHHhhc-ccccccchhHhhhh
Confidence 57888899999999999999999 888899999999 699999999999999999999998 89999999887643
No 97
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=94.35 E-value=0.18 Score=46.29 Aligned_cols=69 Identities=19% Similarity=0.209 Sum_probs=46.4
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhccC--CceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecC
Q 035741 4 MIMLYGFASLASPKAVKEFLEEHTG--EGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSA 80 (890)
Q Consensus 4 ti~Vgnlp~~~t~~~l~~~f~~~~~--~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea 80 (890)
.|||+|||.......++.-+.+... .|.|.+| +.|-|+|-|.+.+.|+.|...++ |-+.-|+.+.|+..
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-------~~~tAilrF~~~~~A~RA~KRme-gEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-------SGGTAILRFPNQEFAERAQKRME-GEDVFGNKISVSFS 74 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------TT-EEEEESSHHHHHHHHHHHT-T--SSSS--EEESS
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-------eCCEEEEEeCCHHHHHHHHHhhc-ccccccceEEEEEc
Confidence 5899999999998877655543321 4778776 35889999999999999999998 78888899999875
No 98
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=94.14 E-value=0.055 Score=60.66 Aligned_cols=78 Identities=19% Similarity=0.294 Sum_probs=68.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEE--------EEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCcccc
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVS--------GVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYG 71 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~--------s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~ 71 (890)
-||||-++|-+++++.+.+||-+. |.|- -++|-+|+ +++|=|.|.+++.-+|++||.-.+ +.+|.
T Consensus 67 ~ti~v~g~~d~~~~~~~~~~f~qc---g~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~a-gkdf~ 142 (351)
T KOG1995|consen 67 ETIFVWGCPDSVCENDNADFFLQC---GVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFA-GKDFC 142 (351)
T ss_pred ccceeeccCccchHHHHHHHHhhc---ceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhc-ccccc
Confidence 479999999999999999999999 7663 34555666 699999999999999999999988 89999
Q ss_pred CceeEEecCCCCC
Q 035741 72 NSFLKASSAKRRT 84 (890)
Q Consensus 72 gr~L~v~ea~~di 84 (890)
|..+||..|..+.
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999999987765
No 99
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=94.02 E-value=0.2 Score=47.45 Aligned_cols=69 Identities=22% Similarity=0.257 Sum_probs=42.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhc----CccccCceeEE
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARE----RLSYGNSFLKA 77 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~----~~~~~gr~L~v 77 (890)
--|++.|++-.++-++|++.|++| |+|.=|.+. +.-.-|+|-|.+.++|++|++.+.. ++.+.+..+++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~---g~V~yVD~~---~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQF---GEVAYVDFS---RGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS-----EEEEE-----TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhc---CCcceEEec---CCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 357899999999999999999999 888777665 5667899999999999999999862 34444444443
No 100
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=94.02 E-value=0.03 Score=59.39 Aligned_cols=64 Identities=19% Similarity=0.198 Sum_probs=57.5
Q ss_pred EEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEE
Q 035741 5 IMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKA 77 (890)
Q Consensus 5 i~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v 77 (890)
+-|-|++..+...+|++.|..+ |.+..+.+ .++||||+|++.+.|..|+++++ +..+.|+.|++
T Consensus 102 ~~~~~~~~r~~~qdl~d~~~~~---g~~~~~~~-----~~~~~~v~Fs~~~da~ra~~~l~-~~~~~~~~l~~ 165 (216)
T KOG0106|consen 102 LIVRNLSLRVSWQDLKDHFRPA---GEVTYVDA-----RRNFAFVEFSEQEDAKRALEKLD-GKKLNGRRISV 165 (216)
T ss_pred eeeccchhhhhHHHHhhhhccc---CCCchhhh-----hccccceeehhhhhhhhcchhcc-chhhcCceeee
Confidence 6788999999999999999999 98833332 78999999999999999999998 79999999999
No 101
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=92.45 E-value=0.34 Score=51.51 Aligned_cols=74 Identities=15% Similarity=0.161 Sum_probs=56.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCC
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAK 81 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~ 81 (890)
.++.+.|||..++++.+..+|+++.|-..|.=+. .-+|.|||+|+++..|..|...+++..--....+++..|+
T Consensus 147 ~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~-----~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 147 NILFLTNIPSESESEMLSDLFEQFPGFKEIRLIP-----PRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred eEEEEecCCcchhHHHHHHHHhhCcccceeEecc-----CCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 4689999999999999999999998877664332 2359999999999999999998873221126666665543
No 102
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=92.11 E-value=0.28 Score=55.91 Aligned_cols=77 Identities=18% Similarity=0.104 Sum_probs=55.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCC
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAK 81 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~ 81 (890)
++||...|+|.++++|++++.|.+. |-+.+....-. +.|-.+.+||++.|+|..|.-.+.++..=.+.-|+|+-.+
T Consensus 414 satlHlsnip~svsee~lk~~f~~~---g~~vkafkff~-kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 414 SATLHLSNIPPSVSEEDLKNLFQEP---GGQVKAFKFFQ-KDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSK 489 (492)
T ss_pred hhheeeccCCcccchhHHHHhhhcC---CceEEeeeecC-CCcceeecccCChhHhhhhccccccccCCCCceEEEEeec
Confidence 4689999999999999999999999 65544433322 4677999999999988766655543333334478887655
Q ss_pred C
Q 035741 82 R 82 (890)
Q Consensus 82 ~ 82 (890)
-
T Consensus 490 s 490 (492)
T KOG1190|consen 490 S 490 (492)
T ss_pred c
Confidence 3
No 103
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=90.09 E-value=0.76 Score=38.33 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=43.6
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHH
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIK 61 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~ 61 (890)
.+.|-|.|+|.+.. ++|..+|+++ |+|....+- ...-+.+|+|.+..+|+.|+
T Consensus 1 ~~wI~V~Gf~~~~~-~~vl~~F~~f---GeI~~~~~~---~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLA-EEVLEHFASF---GEIVDIYVP---ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHH-HHHHHHHHhc---CCEEEEEcC---CCCcEEEEEECCHHHHHhhC
Confidence 35799999997765 5666799999 999998776 45678999999999998873
No 104
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=90.06 E-value=0.17 Score=54.72 Aligned_cols=59 Identities=20% Similarity=0.140 Sum_probs=50.8
Q ss_pred HHHHHHHh-hccCCceEEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 17 KAVKEFLE-EHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 17 ~~l~~~f~-~~~~~G~V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
++|...|+ .| |+|..++|-... --+|-+.|+|..+|+|++|++.+| +-||+|+.+.+.-
T Consensus 83 Ed~f~E~~~ky---gEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~ln-nRw~~G~pi~ae~ 144 (260)
T KOG2202|consen 83 EDVFTELEDKY---GEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLN-NRWYNGRPIHAEL 144 (260)
T ss_pred HHHHHHHHHHh---hhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHc-CccccCCcceeee
Confidence 55666666 78 999999888777 589999999999999999999999 7999999987763
No 105
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=89.77 E-value=0.53 Score=56.71 Aligned_cols=70 Identities=21% Similarity=0.319 Sum_probs=55.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhcc-CCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEE
Q 035741 1 MAKMIMLYGFASLASPKAVKEFLEEHT-GEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKA 77 (890)
Q Consensus 1 M~kti~Vgnlp~~~t~~~l~~~f~~~~-~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v 77 (890)
|+--|++-|||++|.+.|++.||+..+ -.|.|+ ||- .--|=|||-|.|+|.|..|+.. +++-+.|...++
T Consensus 1 MsVIIRLqnLP~tAga~DIR~FFSGL~IPdGgVH---IIG--Ge~GeaFI~FsTDeDARlaM~k--dr~~i~g~~VrL 71 (944)
T KOG4307|consen 1 MSVIIRLQNLPMTAGASDIRTFFSGLKIPDGGVH---IIG--GEEGEAFIGFSTDEDARLAMTK--DRLMIHGAEVRL 71 (944)
T ss_pred CceEEEecCCcccccchHHHHhhcccccCCCceE---Eec--ccccceEEEecccchhhhhhhh--cccceecceEEE
Confidence 788899999999999999999999986 466654 441 3568999999999999999887 556565554443
No 106
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=89.40 E-value=0.89 Score=51.12 Aligned_cols=58 Identities=24% Similarity=0.182 Sum_probs=50.2
Q ss_pred HHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 17 KAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 17 ~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
++|++==+.| |.|.+|.| .||-|-|-+-|-|.+.++|.++|..++ |.+|+||.|.+.-
T Consensus 291 edl~eec~K~---G~v~~vvv-~d~hPdGvvtV~f~n~eeA~~ciq~m~-GR~fdgRql~A~i 348 (382)
T KOG1548|consen 291 EDLTEECEKF---GQVRKVVV-YDRHPDGVVTVSFRNNEEADQCIQTMD-GRWFDGRQLTASI 348 (382)
T ss_pred HHHHHHHHHh---CCcceEEE-eccCCCceeEEEeCChHHHHHHHHHhc-CeeecceEEEEEE
Confidence 4455556777 99999966 577799999999999999999999998 8999999999885
No 107
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=89.23 E-value=0.28 Score=54.86 Aligned_cols=73 Identities=10% Similarity=0.040 Sum_probs=60.5
Q ss_pred EEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 5 IMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 5 i~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
+|||||-|-+|++||.+.+-+. |--.+..+|....| +|+|||.|-..++++..+-+++|- ...+-|.+=.|..
T Consensus 83 ~YvGNL~W~TTD~DL~~A~~S~-G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP-~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 83 CYVGNLLWYTTDADLLKALQST-GLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILP-TKTIHGQSPTVLS 158 (498)
T ss_pred EEecceeEEeccHHHHHHHHhh-hHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcc-cceecCCCCeeec
Confidence 7999999999999999988775 55567778888888 699999999999999999999886 5666676655543
No 108
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=88.81 E-value=0.5 Score=50.31 Aligned_cols=59 Identities=14% Similarity=0.244 Sum_probs=46.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHh
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLAR 65 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~ 65 (890)
.||+|.||...+||++|+.+|+.|.| -.-++|. .|..---|||+|++.+.|..|+.-+.
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~g---f~~l~~~-~~~g~~vaf~~~~~~~~at~am~~lq 269 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPG---FHILKIR-ARGGMPVAFADFEEIEQATDAMNHLQ 269 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCC---ceEEEEe-cCCCcceEeecHHHHHHHHHHHHHhh
Confidence 47999999999999999999999943 4445543 33344679999999888887777765
No 109
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=88.31 E-value=1.4 Score=41.62 Aligned_cols=67 Identities=10% Similarity=0.124 Sum_probs=49.5
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeec--------C--CCCceEEEEecCHHHHHHHHHHHhcCccccCc
Q 035741 4 MIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQN--------K--GSRAHAIVEFTTVEAADFIKCLARERLSYGNS 73 (890)
Q Consensus 4 ti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~d--------r--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr 73 (890)
-|-|.|+|.+ ....|.+.|+++ |+|....-... . .....--|+|++..+|+.|+.. ||..++|.
T Consensus 8 wVtVFGfp~~-~~~~Vl~~F~~~---G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~--NG~i~~g~ 81 (100)
T PF05172_consen 8 WVTVFGFPPS-ASNQVLRHFSSF---GTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK--NGTIFSGS 81 (100)
T ss_dssp EEEEE---GG-GHHHHHHHHHCC---S-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT--TTEEETTC
T ss_pred EEEEEccCHH-HHHHHHHHHHhc---ceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh--CCeEEcCc
Confidence 4889999998 678899999999 99977641111 1 3557889999999999988877 79999998
Q ss_pred eeE
Q 035741 74 FLK 76 (890)
Q Consensus 74 ~L~ 76 (890)
.+.
T Consensus 82 ~mv 84 (100)
T PF05172_consen 82 LMV 84 (100)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
No 110
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=87.84 E-value=0.38 Score=52.02 Aligned_cols=66 Identities=21% Similarity=0.285 Sum_probs=55.4
Q ss_pred EEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCC--------CCce-------EEEEecCHHHHHHHHHHHhcCcc
Q 035741 5 IMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKG--------SRAH-------AIVEFTTVEAADFIKCLARERLS 69 (890)
Q Consensus 5 i~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~--------sRgf-------gfVem~~~~~a~~a~~~~~~~~~ 69 (890)
||++|||......-|+++|++| |.|--|-+-.... -+|+ |-|||.+...|..+.++|| +..
T Consensus 77 vylS~IPp~m~~~rlReil~~y---GeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Ln-n~~ 152 (278)
T KOG3152|consen 77 VYLSNIPPYMDPVRLREILSQY---GEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLN-NTP 152 (278)
T ss_pred EEeccCCCccCHHHHHHHHHhc---cccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhC-CCc
Confidence 9999999999999999999999 9988887765441 1222 7799999999999999998 688
Q ss_pred ccCce
Q 035741 70 YGNSF 74 (890)
Q Consensus 70 ~~gr~ 74 (890)
.||+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 88863
No 111
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=87.19 E-value=0.28 Score=60.24 Aligned_cols=75 Identities=11% Similarity=0.104 Sum_probs=63.2
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCC
Q 035741 4 MIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAK 81 (890)
Q Consensus 4 ti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~ 81 (890)
.+.|.|.|+..|.++++.++..+ |+|.++.+++.| +++|-++|.+.+...|+....-.. .+-+.-+.+.|+-.+
T Consensus 738 ~v~i~g~pf~gt~e~~k~l~~~~---gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d-~~~~rE~~~~v~vsn 813 (881)
T KOG0128|consen 738 SVAISGPPFQGTKEELKSLASKT---GNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVD-VAGKRENNGEVQVSN 813 (881)
T ss_pred hhheeCCCCCCchHHHHhhcccc---CCccccchhhhhccccccceeccCCCcchhhhhcccch-hhhhhhcCccccccC
Confidence 47799999999999999999999 999999999999 799999999999998888776654 455566666666533
Q ss_pred C
Q 035741 82 R 82 (890)
Q Consensus 82 ~ 82 (890)
|
T Consensus 814 p 814 (881)
T KOG0128|consen 814 P 814 (881)
T ss_pred C
Confidence 3
No 112
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=86.41 E-value=1 Score=54.38 Aligned_cols=71 Identities=13% Similarity=0.165 Sum_probs=55.9
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhcc-CCceEEEEEeeec-C-CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 4 MIMLYGFASLASPKAVKEFLEEHT-GEGTVSGVEVGQN-K-GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 4 ti~Vgnlp~~~t~~~l~~~f~~~~-~~G~V~s~~i~~d-r-~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
-|.+-|+|+++|-+|+.+||..|- -+| +|.|... . .+-|=+.|-|++.++|.+|..-++ +..+..|.+++.
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~---sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~-~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPN---SIRIRRNDDGVPTGECMVAFESQEEARRASMDLD-GQKIRNRVVSLR 942 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCC---ceeEeecCCCCcccceeEeecCHHHHHhhhhccc-cCcccceeEEEE
Confidence 378999999999999999999993 122 2222222 2 588999999999999999988887 688888887764
No 113
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=85.74 E-value=0.69 Score=53.22 Aligned_cols=69 Identities=17% Similarity=0.201 Sum_probs=59.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeec---C-------------CCCceEEEEecCHHHHHHHHHHHh
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQN---K-------------GSRAHAIVEFTTVEAADFIKCLAR 65 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~d---r-------------~sRgfgfVem~~~~~a~~a~~~~~ 65 (890)
++||-|.|||-+-.-+.|.++|..+ |.|.+|.|-.+ - .-+-.|+||+++.++|.+|.+++|
T Consensus 231 srtivaenLP~Dh~~enl~kiFg~~---G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 231 SRTIVAENLPLDHSYENLSKIFGTV---GSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred cceEEEecCCcchHHHHHHHHhhcc---cceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 5789999999999999999999999 99999999988 1 136789999999999999999997
Q ss_pred -cCccccCc
Q 035741 66 -ERLSYGNS 73 (890)
Q Consensus 66 -~~~~~~gr 73 (890)
.+.|=.|=
T Consensus 308 ~e~~wr~gl 316 (484)
T KOG1855|consen 308 PEQNWRMGL 316 (484)
T ss_pred hhhhhhhcc
Confidence 23444443
No 114
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=83.65 E-value=2.6 Score=47.31 Aligned_cols=70 Identities=20% Similarity=0.293 Sum_probs=56.9
Q ss_pred EEEeCCCCCCCHHHH------HHHHhhccCCceEEEEEeeecC-----C-CCceE--EEEecCHHHHHHHHHHHhcCccc
Q 035741 5 IMLYGFASLASPKAV------KEFLEEHTGEGTVSGVEVGQNK-----G-SRAHA--IVEFTTVEAADFIKCLARERLSY 70 (890)
Q Consensus 5 i~Vgnlp~~~t~~~l------~~~f~~~~~~G~V~s~~i~~dr-----~-sRgfg--fVem~~~~~a~~a~~~~~~~~~~ 70 (890)
+||-+||..+-.+|+ .+||.+| |.+-. |+-.| . .-+++ ++.|.+.|+|..+|+..+ |...
T Consensus 117 vYVigi~pkva~Ee~~~vLk~~eyFGQy---GkI~K--IvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vD-gs~~ 190 (480)
T COG5175 117 VYVIGIPPKVADEEVAPVLKRHEYFGQY---GKIKK--IVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVD-GSLL 190 (480)
T ss_pred eEEecCCCCCCcccccccccchhhhhhc---cceeE--EEecccccccccccccceEEEEecchHHHHHHHHHhc-cccc
Confidence 799999999988883 5799999 99864 44444 1 22455 999999999999999987 8999
Q ss_pred cCceeEEecC
Q 035741 71 GNSFLKASSA 80 (890)
Q Consensus 71 ~gr~L~v~ea 80 (890)
+||-||+.--
T Consensus 191 DGr~lkatYG 200 (480)
T COG5175 191 DGRVLKATYG 200 (480)
T ss_pred cCceEeeecC
Confidence 9999998753
No 115
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=83.27 E-value=2.1 Score=50.83 Aligned_cols=55 Identities=20% Similarity=0.160 Sum_probs=46.9
Q ss_pred CCceEEEEEeeecC------CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCCCC
Q 035741 28 GEGTVSGVEVGQNK------GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAKRR 83 (890)
Q Consensus 28 ~~G~V~s~~i~~dr------~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~~d 83 (890)
+-|.|.+|+|-.+- -.=|-.||||.+.++++.|.+.|+ |.-|.||.....--++|
T Consensus 432 k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~-GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 432 KFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELT-GRKFANRTVVASYYDED 492 (500)
T ss_pred ccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHcc-CceeCCcEEEEEecCHH
Confidence 44999999999883 255888999999999999999998 89999999988754444
No 116
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=80.44 E-value=0.22 Score=61.12 Aligned_cols=71 Identities=23% Similarity=0.242 Sum_probs=58.5
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 4 MIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 4 ti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
|+.|+|+++.+.+.+|..+|..+ |++..+.|.... +.||.|+|+|..++.+.+|++... +..++-..+-++
T Consensus 669 ~~fvsnl~~~~~~~dl~~~~~~~---~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d-~~~~gK~~v~i~ 742 (881)
T KOG0128|consen 669 KIFVSNLSPKMSEEDLSERFSPS---GTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRD-SCFFGKISVAIS 742 (881)
T ss_pred HHHHhhcchhhcCchhhhhcCcc---chhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhh-hhhhhhhhhhee
Confidence 57899999999999999999999 888888887444 799999999999999999998854 455554444333
No 117
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=80.09 E-value=4.3 Score=46.24 Aligned_cols=67 Identities=12% Similarity=0.071 Sum_probs=56.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccccC
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYGN 72 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~g 72 (890)
+++|.-.|-|..+||+.|-+++.+..=. -.+++|..-| || .-|..||++.+.|-.|+.++| ++...|
T Consensus 406 s~vLHffNaP~~vtEe~l~~i~nek~v~--~~svkvFp~kserS-ssGllEfe~~s~Aveal~~~N-H~pi~~ 474 (494)
T KOG1456|consen 406 SNVLHFFNAPLGVTEEQLIGICNEKDVP--PTSVKVFPLKSERS-SSGLLEFENKSDAVEALMKLN-HYPIEG 474 (494)
T ss_pred cceeEEecCCCccCHHHHHHHhhhcCCC--cceEEeeccccccc-ccceeeeehHHHHHHHHHHhc-cccccC
Confidence 4678999999999999999999999433 5788888888 44 678999999999999999998 555443
No 118
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=79.89 E-value=2 Score=46.75 Aligned_cols=62 Identities=16% Similarity=0.171 Sum_probs=55.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHh
Q 035741 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLAR 65 (890)
Q Consensus 1 M~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~ 65 (890)
|-+.|||-|++.-|+-+.+..-|+.+ |.|...=++.|- ++-|=|+|+|...-+|.+|....+
T Consensus 30 ~~a~l~V~nl~~~~sndll~~~f~~f---g~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 30 MHAELYVVNLMQGASNDLLEQAFRRF---GPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ccceEEEEecchhhhhHHHHHhhhhc---CccchheeeecccccccccchhhhhcchhHHHHHHHhc
Confidence 44679999999999999999999999 999988777776 677999999999999999988876
No 119
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=79.30 E-value=3.9 Score=45.29 Aligned_cols=59 Identities=24% Similarity=0.184 Sum_probs=48.3
Q ss_pred HHHHHHHHhhccCCceEEEEEeeecC-C---CCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 16 PKAVKEFLEEHTGEGTVSGVEVGQNK-G---SRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 16 ~~~l~~~f~~~~~~G~V~s~~i~~dr-~---sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
++|+++=-|.| |+|..|-|..+- . ---=-||||+..+.|.+|.--+| |..||||..++-
T Consensus 300 ede~keEceKy---g~V~~viifeip~~p~deavRiFveF~r~e~aiKA~Vdln-GRyFGGr~v~A~ 362 (378)
T KOG1996|consen 300 EDETKEECEKY---GKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLN-GRYFGGRVVSAC 362 (378)
T ss_pred HHHHHHHHHhh---cceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcC-Cceecceeeehe
Confidence 56778888899 999999888776 1 12346899999999988888887 899999988764
No 120
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=78.97 E-value=4.7 Score=40.69 Aligned_cols=58 Identities=16% Similarity=0.039 Sum_probs=44.8
Q ss_pred HHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCCCCCC
Q 035741 18 AVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAKRRTP 85 (890)
Q Consensus 18 ~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~~di~ 85 (890)
+|.+-|++| |+|.=++.+. +-=.|.|.+.+.|.+|+++ +|..++|+.|+|+.--||-+
T Consensus 52 ~ll~~~~~~---GevvLvRfv~-----~~mwVTF~dg~sALaals~--dg~~v~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 52 ELLQKFAQY---GEVVLVRFVG-----DTMWVTFRDGQSALAALSL--DGIQVNGRTLKIRLKTPDWL 109 (146)
T ss_dssp HHHHHHHCC---S-ECEEEEET-----TCEEEEESSCHHHHHHHHG--CCSEETTEEEEEEE------
T ss_pred HHHHHHHhC---CceEEEEEeC-----CeEEEEECccHHHHHHHcc--CCcEECCEEEEEEeCCccHH
Confidence 788888888 9999888874 4568999999999888888 79999999999998877765
No 121
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=78.66 E-value=8.7 Score=40.22 Aligned_cols=73 Identities=15% Similarity=0.314 Sum_probs=59.5
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhc-Cc--cccCceeEEecC
Q 035741 4 MIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARE-RL--SYGNSFLKASSA 80 (890)
Q Consensus 4 ti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~-~~--~~~gr~L~v~ea 80 (890)
.+-|.+||.+.+=.|||+..-+. |.|.=+++-.| |.|.|+|...|..+-|+..+.+ .. .=...+++|.+.
T Consensus 117 RVvVsGLp~SgSWQDLKDHmRea---GdvCfadv~rD----g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~~~ 189 (241)
T KOG0105|consen 117 RVVVSGLPPSGSWQDLKDHMREA---GDVCFADVQRD----GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVRGD 189 (241)
T ss_pred eEEEecCCCCCchHHHHHHHHhh---CCeeeeeeecc----cceeeeeeehhhHHHHHHhhccccccCcCcEeeEEeccc
Confidence 36799999999999999999999 99999998855 7999999999999999999872 11 122346677776
Q ss_pred CCC
Q 035741 81 KRR 83 (890)
Q Consensus 81 ~~d 83 (890)
..+
T Consensus 190 ~~~ 192 (241)
T KOG0105|consen 190 ENR 192 (241)
T ss_pred CCC
Confidence 555
No 122
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=78.58 E-value=6.8 Score=34.62 Aligned_cols=61 Identities=10% Similarity=0.115 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHhhccC--CceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecC
Q 035741 13 LASPKAVKEFLEEHTG--EGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSA 80 (890)
Q Consensus 13 ~~t~~~l~~~f~~~~~--~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea 80 (890)
.++..+|..++...+| ...|-.++|. .-|.||+-... .|+.+++.++ +..+.|+.++|..|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~-----~~~S~vev~~~-~a~~v~~~l~-~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIF-----DNFSFVEVPEE-VAEKVLEALN-GKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE------SS-EEEEE-TT--HHHHHHHHT-T--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEe-----eeEEEEEECHH-HHHHHHHHhc-CCCCCCeeEEEEEC
Confidence 4678899999999965 5667777775 47999999555 5778888887 79999999999876
No 123
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=77.18 E-value=2.5 Score=48.27 Aligned_cols=80 Identities=10% Similarity=0.105 Sum_probs=66.7
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC------CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEE
Q 035741 4 MIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK------GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKA 77 (890)
Q Consensus 4 ti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr------~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v 77 (890)
-|+|.||..+||-+.+.++|... |.|..+.+...- -..--+||-|.+...+..|--|-| ..|-++.|.|
T Consensus 9 vIqvanispsat~dqm~tlFg~l---GkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtn--tvfvdraliv 83 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNL---GKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTN--TVFVDRALIV 83 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhc---cccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhcc--ceeeeeeEEE
Confidence 59999999999999999999999 999999988733 244568999999988877766644 8999999999
Q ss_pred ecCCCCCCCCC
Q 035741 78 SSAKRRTPHFA 88 (890)
Q Consensus 78 ~ea~~di~p~r 88 (890)
.++-.-.+|++
T Consensus 84 ~p~~~~~~p~r 94 (479)
T KOG4676|consen 84 RPYGDEVIPDR 94 (479)
T ss_pred EecCCCCCccH
Confidence 99776666744
No 124
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=75.82 E-value=7.2 Score=46.15 Aligned_cols=70 Identities=14% Similarity=0.211 Sum_probs=50.7
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC--------CCCc---eEEEEecCHHHHHHHHHHHhcCccc
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--------GSRA---HAIVEFTTVEAADFIKCLARERLSY 70 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr--------~sRg---fgfVem~~~~~a~~a~~~~~~~~~~ 70 (890)
+.+|.||+||+..+|++|.+.|-++ |+|. |-=++ -++| |+|.-|+++.+.++-+.+-. ..-
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~F---Gs~~---VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~--~~~ 330 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQF---GSVK---VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS--EGE 330 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccc---cceE---eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh--hcc
Confidence 4679999999999999999999999 7764 32221 2677 99999988876555444432 344
Q ss_pred cCceeEEec
Q 035741 71 GNSFLKASS 79 (890)
Q Consensus 71 ~gr~L~v~e 79 (890)
+.-+++|+.
T Consensus 331 ~~~yf~vss 339 (520)
T KOG0129|consen 331 GNYYFKVSS 339 (520)
T ss_pred cceEEEEec
Confidence 556676664
No 125
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=71.46 E-value=2.5 Score=51.17 Aligned_cols=69 Identities=16% Similarity=0.113 Sum_probs=61.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 1 M~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
|.-|+.|||+.+.+..+=++..++.. |-|.+.+.+. |||-+|....++..|+.+++ -+..+|.-|.+|.
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~---g~v~s~kr~~------fgf~~f~~~~~~~ra~r~~t-~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKS---GFVPSWKRDK------FGFCEFLKHIGDLRASRLLT-ELNIDDQKLIENV 107 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhC---Ccchhhhhhh------hcccchhhHHHHHHHHHHhc-ccCCCcchhhccc
Confidence 45689999999999999999999999 9999999884 99999999999999999987 4677787777775
No 126
>PF00623 RNA_pol_Rpb1_2: RNA polymerase Rpb1, domain 2; InterPro: IPR000722 RNA polymerases catalyse the DNA dependent polymerisation of RNA from DNA, using the four ribonucleoside triphosphates as substrates. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Eukaryotic RNA polymerase I is essentially used to transcribe ribosomal RNA units, polymerase II is used for mRNA precursors, and III is used to transcribe 5S and tRNA genes. Each class of RNA polymerase is assembled from nine to fourteen different polypeptides. Members of the family include the largest subunit from eukaryotes; the gamma subunit from Cyanobacteria; the beta' subunit from bacteria; the A' subunit from archaea; and the B'' subunit from chloroplast RNA polymerases.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_M 2PMZ_Q 3HKZ_I 1ZYR_D 1SMY_D 2A68_N 2O5J_D 3AOH_N 2O5I_D 2CW0_N ....
Probab=71.34 E-value=5 Score=41.25 Aligned_cols=49 Identities=24% Similarity=0.433 Sum_probs=32.8
Q ss_pred c-eEEEeeCCCCCCCceEEEEEecCCCCCCCCCeEEcCCCCCCCCCCccc--CCCCCCCeEEEE
Q 035741 589 G-LMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECS--GSDQDGEIYFVC 649 (890)
Q Consensus 589 G-~VlV~RnPclHPGDIr~v~AVd~P~L~hL~dVIVFp~kG~Rplps~lS--GGDLDGD~Y~Vi 649 (890)
| .|++-|.|+||..-++-+++.-.+. +-=|=+|..|+ +.|+|||+-.|.
T Consensus 98 gd~vl~nRqPtLh~~s~~a~~~~~~~~------------~t~~~~~~~c~~~NADFDGDem~i~ 149 (166)
T PF00623_consen 98 GDIVLLNRQPTLHRMSIMAHKVRVLPG------------KTIRINPLVCSPFNADFDGDEMNIH 149 (166)
T ss_dssp T-EEEEEESS-SSGGGEEEEEEEEESS------------SSEEEEGGGHHHHT--TSS-EEEEE
T ss_pred CceeEEeccchhccceeeeeeeeeecc------------cEEEeeccchhhhhccCCcceEEEE
Confidence 5 6999999999999999999876554 11122344444 689999998875
No 127
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=70.02 E-value=4.7 Score=46.54 Aligned_cols=68 Identities=10% Similarity=0.121 Sum_probs=54.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcc--CCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHT--GEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~--~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
.++|+|||...++.++|...|...- |.|.+. + ++ |++||--.+..-|.+|++.+++.....|..+-|-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl----~---k~-gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~ 71 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL----V---KS-GYAFVDCPDQQWANKAIETLSGKVELQGKRQEVE 71 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee----e---ec-ceeeccCCchhhhhhhHHhhchhhhhcCceeecc
Confidence 5799999999999999999998873 233321 1 33 9999999999999999999986567888776553
No 128
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=69.57 E-value=7 Score=46.71 Aligned_cols=73 Identities=10% Similarity=0.145 Sum_probs=58.5
Q ss_pred EEEeCCCCCCCHH------HHHHHHhhccCCceEEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccccCceeE
Q 035741 5 IMLYGFASLASPK------AVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLK 76 (890)
Q Consensus 5 i~Vgnlp~~~t~~------~l~~~f~~~~~~G~V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~ 76 (890)
|-|-|+|---.+. -|..+|+.+ |.+..+.+--|- +++||.|+|+++...|+.|+.-+||...-..+.+.
T Consensus 61 Vvv~g~PvV~~~rl~klk~vl~kvfsk~---gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 61 VVVDGAPVVGPARLEKLKKVLTKVFSKA---GKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred EEECCCcccChhHHHHHHHHHHHHHHhh---ccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 5677887654443 356789999 988888877666 79999999999999999999999954556788888
Q ss_pred EecC
Q 035741 77 ASSA 80 (890)
Q Consensus 77 v~ea 80 (890)
||-.
T Consensus 138 v~~f 141 (698)
T KOG2314|consen 138 VRLF 141 (698)
T ss_pred eehh
Confidence 8854
No 129
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=63.58 E-value=28 Score=30.40 Aligned_cols=55 Identities=18% Similarity=0.144 Sum_probs=45.7
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHH
Q 035741 4 MIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCL 63 (890)
Q Consensus 4 ti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~ 63 (890)
+|+|.|+ -+.+.++++.||..|.+......|+-|-|-. +=|-|.|.+.|..|+..
T Consensus 7 avhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdDtS----cNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 7 AVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDDTS----CNVVFKDEETAARALVA 61 (62)
T ss_pred eEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecCCc----EEEEECCHHHHHHHHHc
Confidence 5888887 4688999999999997767788999997752 56889999999888765
No 130
>smart00663 RPOLA_N RNA polymerase I subunit A N-terminus.
Probab=60.74 E-value=9.6 Score=42.72 Aligned_cols=48 Identities=23% Similarity=0.351 Sum_probs=35.3
Q ss_pred eEEEeeCCCCCCCceEEEEEecCCCCCCCCCeEEcCCCCCCCCCCccc--CCCCCCCeEEEE
Q 035741 590 LMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECS--GSDQDGEIYFVC 649 (890)
Q Consensus 590 ~VlV~RnPclHPGDIr~v~AVd~P~L~hL~dVIVFp~kG~Rplps~lS--GGDLDGD~Y~Vi 649 (890)
.|++-|.|+||..-|+-+++.-.|. +-=|=+|..|+ +.|+|||+-.+.
T Consensus 204 ~Vl~NRqPsLHr~si~a~~v~v~~~------------~tir~n~~~c~~fNADFDGDeMnih 253 (295)
T smart00663 204 VVLFNRQPTLHRMSIQAHRVRVLEG------------KTIRLNPLVCSPYNADFDGDEMNLH 253 (295)
T ss_pred EEEEecCCccccccceeEEEEEecC------------ceEEecCccCCcccCCcCCCEEEEe
Confidence 7999999999999999998876664 11122333333 589999998764
No 131
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=59.79 E-value=6.8 Score=43.62 Aligned_cols=89 Identities=10% Similarity=-0.004 Sum_probs=65.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
.+.++|++.+.+.+++...++.++ |++..+..+..+ .++|++-|.|...+++.+++..+. .....++.+...-
T Consensus 89 ~~~f~g~~s~~~e~~~~~~~~~~~---g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~-~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 89 STFFVGELSENIEESEDDNFSSEA---GLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESG-SKVLDGNKGEKDL 164 (285)
T ss_pred ccccccccccchhhccccccchhh---cCcccchhhhhccccccccceeeccccHHHHHHHHHhhh-ccccccccccCcc
Confidence 578999999999999999999999 999988888866 799999999999999999888864 2333333333333
Q ss_pred CCCCCCCCCCCCcccccc
Q 035741 80 AKRRTPHFAKRTPHYKLG 97 (890)
Q Consensus 80 a~~di~p~rp~~~~~~~~ 97 (890)
...++ + +|-.+.-++.
T Consensus 165 ~~~~~-~-~~~n~~~~~~ 180 (285)
T KOG4210|consen 165 NTRRG-L-RPKNKLSRLS 180 (285)
T ss_pred ccccc-c-cccchhcccc
Confidence 33333 3 3444444444
No 132
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=52.16 E-value=39 Score=38.88 Aligned_cols=75 Identities=17% Similarity=0.165 Sum_probs=57.1
Q ss_pred EEEeCCCCC-CCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCCCC
Q 035741 5 IMLYGFASL-ASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAKRR 83 (890)
Q Consensus 5 i~Vgnlp~~-~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~~d 83 (890)
+.|+||-.. ..-+-|-.+|=.| |.|..||....+ -|=|.|||.|..|.+.|+.-||+-..| |-.|.|-..+..
T Consensus 290 mMVyGLdh~k~N~drlFNl~ClY---GNV~rvkFmkTk--~gtamVemgd~~aver~v~hLnn~~lf-G~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 290 MMVYGLDHGKMNCDRLFNLFCLY---GNVERVKFMKTK--PGTAMVEMGDAYAVERAVTHLNNIPLF-GGKLNVCVSKQN 363 (494)
T ss_pred EEEEeccccccchhhhhhhhhhc---CceeeEEEeecc--cceeEEEcCcHHHHHHHHHHhccCccc-cceEEEeecccc
Confidence 557777654 4567789999999 999999988433 288999999999999999999953345 455776666555
Q ss_pred CC
Q 035741 84 TP 85 (890)
Q Consensus 84 i~ 85 (890)
-+
T Consensus 364 ~v 365 (494)
T KOG1456|consen 364 FV 365 (494)
T ss_pred cc
Confidence 44
No 133
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=49.98 E-value=15 Score=44.22 Aligned_cols=78 Identities=18% Similarity=0.187 Sum_probs=63.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC-CCCceEEEEecCHHHHHHHHHHHhcCc--cccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK-GSRAHAIVEFTTVEAADFIKCLARERL--SYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr-~sRgfgfVem~~~~~a~~a~~~~~~~~--~~~gr~L~v~ 78 (890)
+.-||+.||---.|...|++++...+ |.|... ++|| +| +-||-+.+.++|.+.+.+|+|=. .-+++.|.|-
T Consensus 444 SnvlhI~nLvRPFTlgQLkelL~rtg--g~Vee~--WmDkIKS--hCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ad 517 (718)
T KOG2416|consen 444 SNVLHIDNLVRPFTLGQLKELLGRTG--GNVEEF--WMDKIKS--HCYVSYSSVEEAAATREALHNVQWPPSNPKHLIAD 517 (718)
T ss_pred cceEeeecccccchHHHHHHHHhhcc--CchHHH--HHHHhhc--ceeEecccHHHHHHHHHHHhccccCCCCCceeEee
Confidence 45699999999999999999999773 667666 8898 66 78999999999999999998423 3677888887
Q ss_pred cCCCCCC
Q 035741 79 SAKRRTP 85 (890)
Q Consensus 79 ea~~di~ 85 (890)
.+..|-+
T Consensus 518 f~~~del 524 (718)
T KOG2416|consen 518 FVRADEL 524 (718)
T ss_pred ecchhHH
Confidence 7766554
No 134
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=38.03 E-value=1.7e+02 Score=28.34 Aligned_cols=64 Identities=11% Similarity=0.066 Sum_probs=52.0
Q ss_pred EEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC-CCCceEEEEecCHHHHHHHHHHHhcCcccc
Q 035741 5 IMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK-GSRAHAIVEFTTVEAADFIKCLARERLSYG 71 (890)
Q Consensus 5 i~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr-~sRgfgfVem~~~~~a~~a~~~~~~~~~~~ 71 (890)
+=+...|+..+.++|..|.+.+ ...|..++|+.|- ..|==+.+.|.+.++|..=-..-| |..|.
T Consensus 16 ~~l~vp~~~~~~d~l~~f~~~~--~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fN-Gk~Fn 80 (110)
T PF07576_consen 16 CCLAVPPYMTPSDFLLFFGAPF--REDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFN-GKPFN 80 (110)
T ss_pred EEEEeCcccccHHHHHHhhhcc--cccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhC-CCccC
Confidence 4467788888999998888777 4888999999988 588889999999998887777776 56553
No 135
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=37.42 E-value=9.8 Score=47.75 Aligned_cols=59 Identities=17% Similarity=0.240 Sum_probs=49.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC--CCCceEEEEecCHHHHHHHHHHH
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLA 64 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~ 64 (890)
.||++||++..+++.+++.-|+.+ |.|..|.|.+.+ +-=.||||-|.+..++-.|..-+
T Consensus 373 rTLf~Gnl~~kl~eseiR~af~e~---gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~ 433 (975)
T KOG0112|consen 373 RTLFLGNLDSKLTESEIRPAFDES---GKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEE 433 (975)
T ss_pred hhhhhcCcccchhhhhhhhhhhhh---ccccccccccCCCCcccchhhhhhhccccCcccchhh
Confidence 579999999999999999999999 999999999997 33389999888777665554443
No 136
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=35.56 E-value=67 Score=33.71 Aligned_cols=60 Identities=15% Similarity=0.089 Sum_probs=43.7
Q ss_pred CHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHh-cCccccCceeEEecC
Q 035741 15 SPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLAR-ERLSYGNSFLKASSA 80 (890)
Q Consensus 15 t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~-~~~~~~gr~L~v~ea 80 (890)
.-+.|+++|..+ +.+.+.-.. +|=+=..|-|.+.++|++|...+. ++..++|..|++.-+
T Consensus 8 ~~~~l~~l~~~~---~~~~~~~~L---~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~ 68 (184)
T PF04847_consen 8 NLAELEELFSTY---DPPVQFSPL---KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFG 68 (184)
T ss_dssp -HHHHHHHHHTT----SS-EEEEE---TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE--
T ss_pred hHHHHHHHHHhc---CCceEEEEc---CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEc
Confidence 457899999999 888777666 555567899999999999999986 468999999999877
No 137
>cd01213 tensin Tensin Phosphotyrosine-binding (PTB) domain. Tensin Phosphotyrosine-binding (PTB) domain. Tensin is a a focal adhesion protein, which contains a C-terminal SH2 domain followed by a PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=31.80 E-value=2e+02 Score=29.01 Aligned_cols=86 Identities=17% Similarity=0.222 Sum_probs=53.6
Q ss_pred EEEEccCceeecCCeecccCceec-cCCCCCCcEEEEEEEcCCCCccCCcccCCCccCCCcchhhhHHHHHHHHhhcCeE
Q 035741 270 KILVTPSKVYFCGPEISLSNRVVR-SYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIV 348 (890)
Q Consensus 270 ~v~vTPtri~l~~P~~e~sNRVlR-~f~~~~drFLRV~F~DE~~~~l~~~~~~p~~~~~~~~~~~~i~~rv~~~L~~Gi~ 348 (890)
++.||.-.|.+..|.- .-+.| +|..+ .|+|+.-+.+.-+ |+..|-.
T Consensus 47 h~kVS~qGItLtDn~r---k~ffrrhypl~-----~Vs~ca~dp~n~~-------------------------~~~~~~~ 93 (138)
T cd01213 47 HFKVSSQGITLTDNTR---KKFFRRHYKVD-----SVIFCAIDPEERM-------------------------WENEGAI 93 (138)
T ss_pred EEEEEcCCeeeecccc---ceeehhhCCcC-----eEEEEeeCCcccc-------------------------ccccccc
Confidence 7778888888876542 22233 35542 5788775433211 1222222
Q ss_pred ecceEeEEEeeccCccccCeEEEEec-CCCCCHHHHHHHhc
Q 035741 349 IGDKKFETLAFSNSQERENTLWMFAS-RPELTAADIRERMG 388 (890)
Q Consensus 349 I~gR~y~FLa~SnSqLRe~s~wFfa~-~~~~t~~~Ir~wmG 388 (890)
...|.|.|.+=...+-.++.||.|++ ++...+..|.+..+
T Consensus 94 ~~kriFgFVar~~~~~~~~~ChvF~e~~~~qpa~~iv~~~~ 134 (138)
T cd01213 94 AKARIFAFVARIPHSSTDNACHVFAELEPEQPASAIVNFAN 134 (138)
T ss_pred cccEEEEEEEecCCCCCCeeEEEeccCCCCCCHHHHHHHHH
Confidence 36788889997655557899999996 46677888876543
No 138
>cd00292 EF1B Elongation factor 1 beta (EF1B) guanine nucleotide exchange domain. EF1B catalyzes the exchange of GDP bound to the G-protein, EF1A, for GTP, an important step in the elongation cycle of the protein biosynthesis. EF1A binds to and delivers the aminoacyl tRNA to the ribosome. The guanine nucleotide exchange domain of EF1B, which is the alpha subunit in yeast, is responsible for the catalysis of this exchange reaction.
Probab=28.24 E-value=1.6e+02 Score=27.37 Aligned_cols=56 Identities=18% Similarity=0.372 Sum_probs=43.0
Q ss_pred hhhhHHHHHHHHhhcCeEecceEeEEEeeccCccccCeEEEEecCCCCCHHHHHHHhcC
Q 035741 331 RRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGD 389 (890)
Q Consensus 331 ~~~~i~~rv~~~L~~Gi~I~gR~y~FLa~SnSqLRe~s~wFfa~~~~~t~~~Ir~wmG~ 389 (890)
..+.+.+.|+.++.+|+.+++-+.+.+||+-.-|+ +.+.-++...+.+++-+-+-.
T Consensus 18 Dl~~l~~~Ik~~~~~gl~~~~~~~epiaFGlk~L~---i~~vv~D~~~~td~lee~i~~ 73 (88)
T cd00292 18 DLDELEEKIRAILMDGLLWGKSKLEPIAFGLKALQ---IYCVVEDDEGGTDELEEAISE 73 (88)
T ss_pred CHHHHHHHHHHhCcCCcEEEEEEEEEeeeEeeEEE---EEEEEEeCCcCcHHHHHHHhc
Confidence 36788899999999999999999999999855554 555556655666777665443
No 139
>PRK02625 rpoC1 DNA-directed RNA polymerase subunit gamma; Provisional
Probab=27.05 E-value=65 Score=39.67 Aligned_cols=47 Identities=21% Similarity=0.360 Sum_probs=33.9
Q ss_pred eEEEeeCCCCCCCceEEEEEecCCCCCCCCCeEEcCCCCCCCCCCccc--CCCCCCCeEEE
Q 035741 590 LMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECS--GSDQDGEIYFV 648 (890)
Q Consensus 590 ~VlV~RnPclHPGDIr~v~AVd~P~L~hL~dVIVFp~kG~Rplps~lS--GGDLDGD~Y~V 648 (890)
.|+.-|-|+||.--||-++++=.+.- -=|=||..|+ ..|+|||+-.|
T Consensus 428 ~VLlNRqPTLHR~sIqAf~~~l~~~k------------tirlhplvC~~fNADFDGDeMnv 476 (627)
T PRK02625 428 PVLLNRAPTLHRLGIQAFEPILVEGR------------AIQLHPLVCPAFNADFDGDQMAV 476 (627)
T ss_pred EEEecCCCccccccceeEeeEEcCCC------------eEEeccccCCcccCCcCCCeEEE
Confidence 79999999999999999988755531 1122333333 47999999765
No 140
>CHL00018 rpoC1 RNA polymerase beta' subunit
Probab=26.88 E-value=59 Score=40.33 Aligned_cols=48 Identities=21% Similarity=0.357 Sum_probs=34.1
Q ss_pred ceEEEeeCCCCCCCceEEEEEecCCCCCCCCCeEEcCCCCCCCCCCccc--CCCCCCCeEEE
Q 035741 589 GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECS--GSDQDGEIYFV 648 (890)
Q Consensus 589 G~VlV~RnPclHPGDIr~v~AVd~P~L~hL~dVIVFp~kG~Rplps~lS--GGDLDGD~Y~V 648 (890)
..|++-|-|+||.--||-+++|=.+. +-=|=||..|+ ..|+|||+-.|
T Consensus 448 d~VLlNRqPTLHR~sIqAf~~~L~~g------------ktIrLhplvC~~fNADFDGDqMnv 497 (663)
T CHL00018 448 HPVLLNRAPTLHRLGIQAFQPILVEG------------RAICLHPLVCKGFNADFDGDQMAV 497 (663)
T ss_pred ceeeecCCCcccccccceeeEEecCC------------CeEEeCcccCCcccCCccCcEEEE
Confidence 38999999999999999988865553 11122233333 47999999776
No 141
>TIGR02387 rpoC1_cyan DNA-directed RNA polymerase, gamma subunit. The RNA polymerase gamma subunit, encoded by the rpoC1 gene, is found in cyanobacteria and corresponds to the N-terminal region the beta' subunit, encoded by rpoC, in other bacteria. The equivalent subunit in plastids and chloroplasts is designated beta', while the product of the rpoC2 gene is designated beta''.
Probab=26.17 E-value=58 Score=40.03 Aligned_cols=48 Identities=21% Similarity=0.374 Sum_probs=34.1
Q ss_pred ceEEEeeCCCCCCCceEEEEEecCCCCCCCCCeEEcCCCCCCCCCCccc--CCCCCCCeEEE
Q 035741 589 GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECS--GSDQDGEIYFV 648 (890)
Q Consensus 589 G~VlV~RnPclHPGDIr~v~AVd~P~L~hL~dVIVFp~kG~Rplps~lS--GGDLDGD~Y~V 648 (890)
..|+.-|-|+||.--||-++++=.+. +-=|=||..|+ ..|+|||+..|
T Consensus 420 d~VLlNRqPTLHR~sIqAf~~~l~~~------------ktirlhplvC~~fNADFDGDeMnv 469 (619)
T TIGR02387 420 HPVMLNRAPTLHRLGIQAFEPILVDG------------RAIQLHPLVCPAFNADFDGDQMAV 469 (619)
T ss_pred CEEEecCCCccchhcceeeeeEEecC------------CeEEECcccCCcccCCCCCceeee
Confidence 37999999999999999988765443 11122344444 47999999765
No 142
>TIGR00489 aEF-1_beta translation elongation factor aEF-1 beta. This model describes the archaeal translation elongation factor aEF-1 beta. The member from Sulfolobus solfataricus was demonstrated experimentally. It is a dimer that catalyzes the exchange of GDP for GTP on aEF-1 alpha.
Probab=26.01 E-value=2e+02 Score=26.84 Aligned_cols=60 Identities=13% Similarity=0.189 Sum_probs=46.4
Q ss_pred hhhhHHHHHHHHhhcCeEecceEeEEEeeccCccccCeEEEEecCCCCCHHHHHHHhcCccCC
Q 035741 331 RRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREI 393 (890)
Q Consensus 331 ~~~~i~~rv~~~L~~Gi~I~gR~y~FLa~SnSqLRe~s~wFfa~~~~~t~~~Ir~wmG~F~~i 393 (890)
..+.+.++++..+.+|..+++-..+.+||+--.|+ +++.-++.....+.|-+-+..+.+.
T Consensus 18 Dle~L~~~ik~~~~~g~~~~~~~~ePiaFGLkaL~---~~~vv~D~~g~td~lee~i~~ve~V 77 (88)
T TIGR00489 18 DLEALKEKIKERIPEGVEIRKIDEEPIAFGLVAIN---VMVVMGDAEGGTEAAEESLSGIEGV 77 (88)
T ss_pred CHHHHHHHHHHhCcCCcEEeeeEEEeeeccceeeE---EEEEEecCCcChHHHHHHHhcCCCc
Confidence 36888999999999999999999999999855554 6666666556667777777666653
No 143
>PRK00435 ef1B elongation factor 1-beta; Validated
Probab=25.23 E-value=2.1e+02 Score=26.74 Aligned_cols=60 Identities=17% Similarity=0.270 Sum_probs=46.1
Q ss_pred hhhhHHHHHHHHhhcCeEecceEeEEEeeccCccccCeEEEEecCCCCCHHHHHHHhcCccCC
Q 035741 331 RRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREI 393 (890)
Q Consensus 331 ~~~~i~~rv~~~L~~Gi~I~gR~y~FLa~SnSqLRe~s~wFfa~~~~~t~~~Ir~wmG~F~~i 393 (890)
..+.+.+.|+.++.+|+.+++-..+.+||+-..|+ +++.-++.....+.+-+-+-.|.+.
T Consensus 18 Dl~~L~~~ik~~~~~g~~~~~~~~ePIaFGLkaL~---i~~vv~D~~~~td~lee~i~~~e~V 77 (88)
T PRK00435 18 DLDELKEKIKEVLPEGYKINGIEEEPIAFGLKALK---LYVIMPDEEGGTEPVEEAFANVEGV 77 (88)
T ss_pred CHHHHHHHHHHhCcCCcEEeEeEEEEeeccceeEE---EEEEEEcCCcCcHHHHHHHhccCCC
Confidence 36788899999999999999999999999855444 6666666666667777766666553
No 144
>PF11303 DUF3105: Protein of unknown function (DUF3105); InterPro: IPR021454 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=23.59 E-value=60 Score=32.23 Aligned_cols=71 Identities=20% Similarity=0.409 Sum_probs=50.4
Q ss_pred ceEEEeeCCCCCCCceEEEEEecCCCCCCCCCeEEcCCCCCCCCCCcccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCC
Q 035741 589 GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPA 668 (890)
Q Consensus 589 G~VlV~RnPclHPGDIr~v~AVd~P~L~hL~dVIVFp~kG~Rplps~lSGGDLDGD~Y~ViWD~~Lip~~~~~P~~Y~~~ 668 (890)
|-|+|+-+||+.|.+|..|+++-..-+. -+||-|.. ++|.-...+-|...|--
T Consensus 50 GaV~i~Y~p~~~~~~v~~L~~l~~~~~~---~~visP~~------------~~~~pialtaWg~~l~~------------ 102 (130)
T PF11303_consen 50 GAVWITYDPCLPPDQVAKLKALAKSCLP---YVVISPYP------------GLDRPIALTAWGRQLKL------------ 102 (130)
T ss_pred CcEEEEECCCCCHHHHHHHHHHHhccCC---cEEEecCC------------CCCCCEEEeecCCEeec------------
Confidence 8999999999999999998886544222 56666632 25666778888766522
Q ss_pred cccccCCCCCHHHHHHHHHHhhcc
Q 035741 669 PEKILARDVTIEDVEEYFADYIVN 692 (890)
Q Consensus 669 ~~~~l~~~vt~~di~~ffv~ym~~ 692 (890)
..++...|..|+.+|+++
T Consensus 103 ------~~~d~~~i~~Fi~~~~~~ 120 (130)
T PF11303_consen 103 ------DSADDPRIKQFIRKYLQG 120 (130)
T ss_pred ------CcCCHHHHHHHHHHHhcC
Confidence 124456799999988754
No 145
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=22.75 E-value=4.3e+02 Score=23.57 Aligned_cols=58 Identities=16% Similarity=0.152 Sum_probs=35.2
Q ss_pred HHHHhcCCCchHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHhhhcceeecCcceEEEeecCCC
Q 035741 515 EALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKG 582 (890)
Q Consensus 515 ~~L~~~~~~~~~~~l~~ll~~Gf~~~~ePfl~~lL~~~~~~~L~~Lk~K~RI~Vp~s~~l~GV~DetG 582 (890)
+++.........+++..|...||..+ .+-+ .+-|++|. =.|++..+|.+.|.++++++
T Consensus 12 ~li~~~~i~sQ~eL~~~L~~~Gi~vT-QaTi--------SRDLkeL~-~vKv~~~~g~~~Y~l~~~~~ 69 (70)
T PF01316_consen 12 ELISEHEISSQEELVELLEEEGIEVT-QATI--------SRDLKELG-AVKVPDGNGKYRYVLPEETE 69 (70)
T ss_dssp HHHHHS---SHHHHHHHHHHTT-T---HHHH--------HHHHHHHT--EEEECTTSSEEEE-TTSTT
T ss_pred HHHHHCCcCCHHHHHHHHHHcCCCcc-hhHH--------HHHHHHcC-cEEeeCCCCCEEEEecCcCC
Confidence 44555555667788899999999753 2223 23344553 56788889999999999876
No 146
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=21.71 E-value=1.8e+02 Score=29.72 Aligned_cols=56 Identities=20% Similarity=0.229 Sum_probs=45.5
Q ss_pred ceEEE----eCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHh
Q 035741 3 KMIML----YGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLAR 65 (890)
Q Consensus 3 kti~V----gnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~ 65 (890)
.||-| .|++.+-.-+.|-..++.+ |+|.||..- .|--|.|.|.+-.+|=.|.++..
T Consensus 87 sTIVVRWlkknm~~~edl~sV~~~Ls~f---GpI~SVT~c----GrqsavVvF~d~~SAC~Av~Af~ 146 (166)
T PF15023_consen 87 STIVVRWLKKNMQPTEDLKSVIQRLSVF---GPIQSVTLC----GRQSAVVVFKDITSACKAVSAFQ 146 (166)
T ss_pred eeEEeehhhhcCChHHHHHHHHHHHHhc---CCcceeeec----CCceEEEEehhhHHHHHHHHhhc
Confidence 35656 3566666667788889999 999999887 78889999999999999998864
Done!