Query 035741
Match_columns 890
No_of_seqs 369 out of 560
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 09:43:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035741.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035741hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j7n_A RNA-dependent RNA polym 100.0 4E-112 1E-116 1027.5 26.3 482 276-770 131-777 (1022)
2 4fxv_A ELAV-like protein 1; RN 99.7 1E-16 3.6E-21 146.1 9.9 77 2-82 19-98 (99)
3 2lxi_A RNA-binding protein 10; 99.6 9.5E-17 3.3E-21 143.9 6.1 79 2-83 1-83 (91)
4 4f25_A Polyadenylate-binding p 99.6 6.3E-16 2.2E-20 144.0 10.0 78 3-84 6-84 (115)
5 3p5t_L Cleavage and polyadenyl 99.6 2.2E-16 7.7E-21 140.4 6.5 80 3-86 2-86 (90)
6 2dgx_A KIAA0430 protein; RRM d 99.6 2.9E-15 9.9E-20 134.9 10.8 81 2-86 9-93 (96)
7 3s8s_A Histone-lysine N-methyl 99.6 3.3E-15 1.1E-19 138.9 10.1 78 2-83 6-86 (110)
8 3md1_A Nuclear and cytoplasmic 99.6 4.2E-15 1.4E-19 129.1 9.9 78 2-83 1-81 (83)
9 1sjq_A Polypyrimidine tract-bi 99.6 3.5E-15 1.2E-19 138.6 9.8 79 2-86 16-95 (105)
10 2lkz_A RNA-binding protein 5; 99.6 1.4E-15 4.7E-20 138.3 6.8 78 2-82 9-94 (95)
11 1s79_A Lupus LA protein; RRM, 99.6 2.5E-15 8.5E-20 138.3 8.3 76 2-82 11-88 (103)
12 3bs9_A Nucleolysin TIA-1 isofo 99.6 5.5E-15 1.9E-19 129.4 9.6 78 2-83 6-86 (87)
13 2x1f_A MRNA 3'-END-processing 99.6 7.7E-15 2.6E-19 131.6 10.6 81 2-86 2-85 (96)
14 2wbr_A GW182, gawky, LD47780P; 99.6 5.7E-15 2E-19 133.1 9.6 75 1-82 6-80 (89)
15 1whw_A Hypothetical protein ri 99.6 1.1E-14 3.7E-19 131.0 11.4 81 2-86 8-91 (99)
16 3r27_A HnRNP L, heterogeneous 99.6 9.2E-15 3.2E-19 134.7 11.1 78 2-85 21-99 (100)
17 3ns6_A Eukaryotic translation 99.6 1.9E-15 6.6E-20 137.4 6.3 77 2-82 6-92 (100)
18 3ucg_A Polyadenylate-binding p 99.6 8.3E-15 2.8E-19 128.8 9.3 78 2-84 6-86 (89)
19 4a8x_A RNA-binding protein wit 99.6 1E-14 3.6E-19 127.7 9.6 78 2-83 4-85 (88)
20 2dnz_A Probable RNA-binding pr 99.6 2.1E-14 7.2E-19 127.9 11.6 81 2-86 5-88 (95)
21 2cq3_A RNA-binding protein 9; 99.6 2.2E-14 7.5E-19 130.1 11.9 81 2-86 15-96 (103)
22 2cqi_A Nucleolysin TIAR; RNA r 99.5 2E-14 7E-19 130.3 11.5 80 2-85 15-95 (103)
23 3mdf_A Peptidyl-prolyl CIS-tra 99.5 1.1E-14 3.9E-19 126.9 9.4 76 2-81 7-85 (85)
24 2cq0_A Eukaryotic translation 99.5 9.9E-15 3.4E-19 132.4 9.0 81 2-86 15-98 (103)
25 2dgs_A DAZ-associated protein 99.5 1.6E-14 5.6E-19 130.0 10.4 78 2-84 10-90 (99)
26 2do4_A Squamous cell carcinoma 99.5 1.6E-14 5.4E-19 130.3 10.3 79 2-84 17-97 (100)
27 2div_A TRNA selenocysteine ass 99.5 8.4E-15 2.9E-19 131.7 8.3 81 1-85 8-96 (99)
28 1x4a_A Splicing factor, argini 99.5 2.5E-14 8.4E-19 131.2 11.6 79 2-84 22-100 (109)
29 1x4d_A Matrin 3; structural ge 99.5 8.4E-15 2.9E-19 135.2 8.5 76 2-83 15-92 (102)
30 2dnm_A SRP46 splicing factor; 99.5 1.6E-14 5.6E-19 130.9 10.1 79 2-84 13-94 (103)
31 1x5u_A Splicing factor 3B subu 99.5 1.7E-14 5.6E-19 131.1 10.0 79 2-84 15-96 (105)
32 1p27_B RNA-binding protein 8A; 99.5 1.6E-14 5.4E-19 131.5 9.8 79 2-84 23-104 (106)
33 2cpf_A RNA binding motif prote 99.5 1.7E-14 5.8E-19 129.5 9.9 81 2-86 5-91 (98)
34 2la6_A RNA-binding protein FUS 99.5 1.3E-14 4.3E-19 130.9 9.0 76 2-81 13-99 (99)
35 2cqb_A Peptidyl-prolyl CIS-tra 99.5 1.3E-14 4.4E-19 131.1 9.0 81 2-86 12-95 (102)
36 2cph_A RNA binding motif prote 99.5 2.3E-14 8E-19 130.4 10.7 79 2-84 15-98 (107)
37 2dgv_A HnRNP M, heterogeneous 99.5 2E-14 7E-19 127.3 10.1 81 2-86 8-89 (92)
38 2err_A Ataxin-2-binding protei 99.5 9.6E-15 3.3E-19 134.8 8.2 79 2-84 29-108 (109)
39 2cqd_A RNA-binding region cont 99.5 2.3E-14 7.8E-19 132.8 10.6 88 2-95 17-107 (116)
40 2cpz_A CUG triplet repeat RNA- 99.5 1.9E-14 6.5E-19 133.2 9.9 81 2-86 25-108 (115)
41 2kt5_A RNA and export factor-b 99.5 2.3E-14 8E-19 134.5 10.5 83 2-89 35-119 (124)
42 2cqc_A Arginine/serine-rich sp 99.5 2.4E-14 8.3E-19 127.3 10.1 77 2-82 15-94 (95)
43 2dnh_A Bruno-like 5, RNA bindi 99.5 2.9E-14 1E-18 129.5 10.8 81 2-86 15-100 (105)
44 2dhg_A TRNA selenocysteine ass 99.5 1.8E-14 6E-19 130.7 9.2 80 2-85 9-92 (104)
45 3n9u_C Cleavage and polyadenyl 99.5 1.3E-14 4.4E-19 143.1 8.9 77 3-83 56-137 (156)
46 2cq1_A PTB-like protein L; RRM 99.5 2.3E-14 7.8E-19 131.8 9.8 79 2-86 15-94 (101)
47 2ad9_A Polypyrimidine tract-bi 99.5 1.7E-14 5.7E-19 136.8 9.1 79 2-86 31-110 (119)
48 1x5s_A Cold-inducible RNA-bind 99.5 1.7E-14 5.9E-19 130.3 8.8 81 2-86 12-95 (102)
49 1wex_A Hypothetical protein (r 99.5 4.1E-14 1.4E-18 130.7 11.4 81 2-89 15-96 (104)
50 2j8a_A Histone-lysine N-methyl 99.5 6.8E-15 2.3E-19 141.2 6.2 75 1-79 1-92 (136)
51 2dgo_A Cytotoxic granule-assoc 99.5 3.8E-14 1.3E-18 131.0 11.1 81 2-86 15-98 (115)
52 1x5t_A Splicing factor 3B subu 99.5 1.2E-14 4.2E-19 129.7 7.5 79 2-84 5-87 (96)
53 2cpi_A CCR4-NOT transcription 99.5 1.6E-14 5.4E-19 133.6 8.4 79 2-84 15-102 (111)
54 2ywk_A Putative RNA-binding pr 99.5 2.8E-14 9.6E-19 127.1 9.7 77 2-82 16-94 (95)
55 2e5h_A Zinc finger CCHC-type a 99.5 2.9E-14 9.8E-19 126.8 9.7 76 2-81 16-94 (94)
56 2jrs_A RNA-binding protein 39; 99.5 2.3E-14 7.9E-19 132.3 9.4 78 2-83 26-106 (108)
57 3lqv_A PRE-mRNA branch site pr 99.5 2.6E-14 9E-19 132.1 9.7 79 1-83 7-85 (115)
58 2jvr_A Nucleolar protein 3; RN 99.5 1.6E-14 5.5E-19 135.1 8.3 76 3-83 29-105 (111)
59 2mss_A Protein (musashi1); RNA 99.5 1.3E-14 4.3E-19 124.1 6.9 72 4-80 1-75 (75)
60 1oo0_B CG8781-PA, drosophila Y 99.5 3.1E-14 1.1E-18 130.6 9.9 79 2-84 26-107 (110)
61 2krb_A Eukaryotic translation 99.5 1.4E-14 4.8E-19 126.1 7.0 73 2-78 1-81 (81)
62 1x4f_A Matrin 3; structural ge 99.5 1.3E-14 4.5E-19 136.2 7.1 77 2-84 25-103 (112)
63 1x4h_A RNA-binding protein 28; 99.5 4.8E-14 1.6E-18 129.1 10.7 80 2-84 15-102 (111)
64 2d9p_A Polyadenylate-binding p 99.5 4.4E-14 1.5E-18 128.1 10.3 81 2-86 15-96 (103)
65 2fy1_A RNA-binding motif prote 99.5 2.7E-14 9.3E-19 133.4 9.2 80 2-85 7-88 (116)
66 2dgp_A Bruno-like 4, RNA bindi 99.5 3E-14 1E-18 129.6 9.2 79 2-84 13-97 (106)
67 1wg5_A Heterogeneous nuclear r 99.5 2.6E-14 9E-19 130.6 8.8 79 2-85 15-96 (104)
68 2nlw_A Eukaryotic translation 99.5 2.7E-14 9.3E-19 130.7 8.8 78 1-82 14-99 (105)
69 1p1t_A Cleavage stimulation fa 99.5 1.7E-14 5.8E-19 130.6 7.3 79 2-84 8-89 (104)
70 2ki2_A SS-DNA binding protein 99.5 7.1E-15 2.4E-19 129.9 4.5 79 3-86 2-83 (90)
71 2dis_A Unnamed protein product 99.5 3.9E-14 1.3E-18 129.5 9.5 82 2-86 8-95 (109)
72 3s7r_A Heterogeneous nuclear r 99.5 3.2E-14 1.1E-18 124.9 8.6 74 2-80 11-87 (87)
73 2do0_A HnRNP M, heterogeneous 99.5 7.2E-14 2.5E-18 128.7 11.3 79 2-84 15-95 (114)
74 1x4e_A RNA binding motif, sing 99.5 1.7E-14 5.7E-19 126.2 6.7 75 2-80 5-82 (85)
75 1wez_A HnRNP H', FTP-3, hetero 99.5 1.1E-14 3.9E-19 133.3 5.9 79 1-85 14-94 (102)
76 2dh8_A DAZ-associated protein 99.5 2.9E-14 9.9E-19 129.7 8.5 78 2-84 16-96 (105)
77 2cpe_A RNA-binding protein EWS 99.5 3.2E-14 1.1E-18 131.1 8.7 79 2-84 15-104 (113)
78 2e5j_A Methenyltetrahydrofolat 99.5 3.7E-14 1.3E-18 127.6 8.6 77 1-83 18-94 (97)
79 2j76_E EIF-4B, EIF4B, eukaryot 99.5 2.4E-14 8.3E-19 129.8 7.3 76 2-83 19-98 (100)
80 3ex7_B RNA-binding protein 8A; 99.5 6.3E-14 2.1E-18 131.5 10.1 81 2-86 22-105 (126)
81 2la4_A Nuclear and cytoplasmic 99.5 4.4E-14 1.5E-18 127.6 8.6 75 2-83 27-101 (101)
82 2lmi_A GRSF-1, G-rich sequence 99.5 1E-14 3.5E-19 134.0 4.5 77 2-83 11-92 (107)
83 2db1_A Heterogeneous nuclear r 99.5 1E-14 3.5E-19 136.7 4.5 77 2-83 17-98 (118)
84 2kn4_A Immunoglobulin G-bindin 99.5 7.2E-14 2.5E-18 135.9 10.6 79 2-84 70-151 (158)
85 2cq4_A RNA binding motif prote 99.5 2.4E-14 8.2E-19 132.3 6.7 77 2-83 25-104 (114)
86 2khc_A Testis-specific RNP-typ 99.5 4.3E-14 1.5E-18 131.2 8.4 76 2-81 40-118 (118)
87 2kxn_B Transformer-2 protein h 99.5 7.6E-14 2.6E-18 133.1 10.3 79 2-84 46-127 (129)
88 2m2b_A RNA-binding protein 10; 99.5 1.8E-14 6.3E-19 136.9 6.0 78 2-84 23-109 (131)
89 1wi8_A EIF-4B, eukaryotic tran 99.5 6E-14 2E-18 127.6 9.1 77 2-84 15-95 (104)
90 2cpy_A RNA-binding protein 12; 99.5 1.4E-14 4.9E-19 134.5 5.0 78 2-84 15-95 (114)
91 2hgl_A HNRPF protein, heteroge 99.5 1.2E-14 4E-19 140.7 4.4 77 2-83 44-125 (136)
92 1u6f_A Tcubp1, RNA-binding pro 99.5 6.2E-14 2.1E-18 133.8 9.4 79 2-84 42-123 (139)
93 2rs2_A Musashi-1, RNA-binding 99.5 1E-13 3.4E-18 128.1 10.2 78 2-84 25-105 (109)
94 1uaw_A Mouse-musashi-1; RNP-ty 99.5 2.7E-14 9.3E-19 122.2 5.9 73 3-80 1-76 (77)
95 3ulh_A THO complex subunit 4; 99.5 8.8E-14 3E-18 126.7 9.6 76 2-81 29-106 (107)
96 1fj7_A Nucleolin RBD1, protein 99.5 2E-14 6.8E-19 129.9 5.2 77 2-84 17-96 (101)
97 2ek1_A RNA-binding protein 12; 99.5 2.6E-14 8.8E-19 127.4 5.8 76 2-81 15-93 (95)
98 2dng_A Eukaryotic translation 99.5 9.8E-14 3.4E-18 125.9 9.5 78 2-85 15-95 (103)
99 2cqp_A RNA-binding protein 12; 99.5 2.6E-14 8.9E-19 128.2 5.3 77 2-82 15-94 (98)
100 1iqt_A AUF1, heterogeneous nuc 99.5 2.8E-14 9.6E-19 121.7 5.3 72 4-80 1-75 (75)
101 2a3j_A U1 small nuclear ribonu 99.5 1.2E-13 4E-18 132.1 10.1 78 2-83 29-110 (127)
102 2jwn_A Embryonic polyadenylate 99.5 1.1E-13 3.9E-18 129.4 9.8 77 3-84 37-116 (124)
103 1x4b_A Heterogeneous nuclear r 99.5 6.2E-14 2.1E-18 129.9 7.8 77 3-84 28-107 (116)
104 1nu4_A U1A RNA binding domain; 99.5 7.7E-14 2.6E-18 124.7 8.0 79 2-84 8-90 (97)
105 2hvz_A Splicing factor, argini 99.5 1.1E-13 3.6E-18 125.1 8.8 76 3-84 1-76 (101)
106 1why_A Hypothetical protein ri 99.5 2E-13 6.9E-18 122.5 10.5 75 2-83 17-93 (97)
107 2dnn_A RNA-binding protein 12; 99.5 7.8E-14 2.7E-18 129.9 7.6 75 3-83 17-93 (109)
108 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 1.4E-13 4.8E-18 130.7 9.5 75 2-80 63-140 (140)
109 2cqg_A TDP-43, TAR DNA-binding 99.5 2.1E-13 7.1E-18 123.6 10.0 78 2-85 15-95 (103)
110 2xnq_A Nuclear polyadenylated 99.5 2.6E-13 8.9E-18 122.8 10.6 74 1-83 21-95 (97)
111 1whx_A Hypothetical protein ri 99.4 2.1E-13 7.3E-18 126.4 10.2 77 3-86 11-87 (111)
112 1x4c_A Splicing factor, argini 99.4 2.1E-13 7.1E-18 125.3 10.0 75 2-84 15-94 (108)
113 2ytc_A PRE-mRNA-splicing facto 99.4 1.6E-13 5.4E-18 119.8 8.6 74 2-81 12-85 (85)
114 2dha_A FLJ20171 protein; RRM d 99.4 3E-14 1E-18 135.6 4.3 77 2-83 23-105 (123)
115 2dnq_A RNA-binding protein 4B; 99.4 4E-13 1.4E-17 119.0 11.3 75 2-85 8-82 (90)
116 1x4g_A Nucleolysin TIAR; struc 99.4 4E-13 1.4E-17 123.3 11.3 78 2-86 25-102 (109)
117 2lea_A Serine/arginine-rich sp 99.4 1.1E-13 3.6E-18 133.0 7.6 81 2-86 47-130 (135)
118 2dgw_A Probable RNA-binding pr 99.4 1.4E-13 4.9E-18 121.9 7.8 76 2-83 10-87 (91)
119 2hgm_A HNRPF protein, heteroge 99.4 7.1E-14 2.4E-18 133.7 6.1 77 2-83 42-121 (126)
120 1h2v_Z 20 kDa nuclear CAP bind 99.4 2.4E-13 8.3E-18 132.4 9.9 79 2-84 39-120 (156)
121 3d2w_A TAR DNA-binding protein 99.4 2.4E-13 8.1E-18 121.4 8.8 73 2-83 11-84 (89)
122 2hgn_A Heterogeneous nuclear r 99.4 4.5E-14 1.6E-18 137.1 4.4 77 2-84 46-124 (139)
123 2fc9_A NCL protein; structure 99.4 3.3E-13 1.1E-17 121.8 9.5 76 2-84 15-92 (101)
124 2jvo_A Nucleolar protein 3; nu 99.4 3.2E-13 1.1E-17 124.7 9.2 74 2-84 31-104 (108)
125 2cpd_A Apobec-1 stimulating pr 99.4 5.7E-13 1.9E-17 120.0 10.6 76 2-84 15-90 (99)
126 1x5o_A RNA binding motif, sing 99.4 3.5E-13 1.2E-17 124.3 9.4 77 2-82 25-111 (114)
127 2cpj_A Non-POU domain-containi 99.4 2.6E-13 8.9E-18 122.3 8.3 76 2-84 15-90 (99)
128 2i2y_A Fusion protein consists 99.4 3.6E-13 1.2E-17 130.4 9.8 76 2-83 73-148 (150)
129 3q2s_C Cleavage and polyadenyl 99.4 1.4E-13 4.9E-18 143.6 7.4 78 3-84 69-151 (229)
130 2dnp_A RNA-binding protein 14; 99.4 7E-13 2.4E-17 117.4 10.7 74 2-84 9-82 (90)
131 1wf1_A RNA-binding protein RAL 99.4 3.1E-13 1.1E-17 124.2 8.7 77 1-86 26-103 (110)
132 2xs2_A Deleted in azoospermia- 99.4 9.8E-14 3.4E-18 125.5 5.1 75 2-82 9-85 (102)
133 1wg1_A KIAA1579 protein, homol 99.4 2.3E-13 8E-18 120.3 7.3 77 2-86 5-81 (88)
134 3md3_A Nuclear and cytoplasmic 99.4 8.5E-13 2.9E-17 126.8 11.4 78 3-84 1-80 (166)
135 2kvi_A Nuclear polyadenylated 99.4 3.3E-13 1.1E-17 121.3 8.0 76 2-86 10-86 (96)
136 2cpx_A Hypothetical protein FL 99.4 4.7E-13 1.6E-17 123.4 9.1 78 2-84 25-106 (115)
137 2dgt_A RNA-binding protein 30; 99.4 7.2E-13 2.5E-17 117.8 9.9 76 2-86 10-85 (92)
138 1wel_A RNA-binding protein 12; 99.4 5.5E-14 1.9E-18 132.3 2.5 77 2-83 25-104 (124)
139 1fjc_A Nucleolin RBD2, protein 99.4 2.4E-13 8.4E-18 121.4 6.6 77 2-84 16-92 (96)
140 1rk8_A CG8781-PA, CG8781-PA pr 99.4 4.9E-13 1.7E-17 132.0 9.4 79 2-84 72-153 (165)
141 2e5g_A U6 snRNA-specific termi 99.4 7.4E-13 2.5E-17 118.3 9.7 76 2-85 8-84 (94)
142 4f02_A Polyadenylate-binding p 99.4 6.5E-13 2.2E-17 135.6 10.4 79 2-84 15-96 (213)
143 2cqh_A IGF-II mRNA-binding pro 99.4 3.2E-13 1.1E-17 120.2 7.1 75 2-84 8-84 (93)
144 4f02_A Polyadenylate-binding p 99.4 4.2E-13 1.4E-17 137.1 8.9 77 3-83 104-181 (213)
145 2fc8_A NCL protein; structure 99.4 4.9E-13 1.7E-17 120.8 8.3 76 2-84 15-93 (102)
146 2dgu_A Heterogeneous nuclear r 99.4 8.8E-13 3E-17 119.8 9.9 75 3-86 12-86 (103)
147 1sjr_A Polypyrimidine tract-bi 99.4 1.1E-12 3.6E-17 131.0 10.1 77 4-85 48-126 (164)
148 2cq2_A Hypothetical protein LO 99.4 8.7E-13 3E-17 124.2 8.9 76 2-84 25-107 (114)
149 2lcw_A RNA-binding protein FUS 99.1 4.9E-14 1.7E-18 130.8 0.0 79 2-84 7-96 (116)
150 2qfj_A FBP-interacting repress 99.4 1.6E-12 5.5E-17 130.9 11.1 81 2-86 125-208 (216)
151 2e44_A Insulin-like growth fac 99.4 1.6E-12 5.3E-17 116.2 9.6 79 2-85 15-94 (96)
152 3tyt_A Heterogeneous nuclear r 99.4 1.2E-12 4.1E-17 134.1 10.1 77 2-84 4-81 (205)
153 1fxl_A Paraneoplastic encephal 99.4 1.6E-12 5.4E-17 125.0 10.3 79 2-84 2-83 (167)
154 2hzc_A Splicing factor U2AF 65 99.4 1.1E-12 3.7E-17 114.7 8.2 73 2-79 6-86 (87)
155 2cjk_A Nuclear polyadenylated 99.4 6.3E-13 2.2E-17 128.5 7.4 76 3-83 88-166 (167)
156 1l3k_A Heterogeneous nuclear r 99.4 1.7E-12 5.9E-17 128.7 10.7 79 2-85 13-94 (196)
157 3beg_B Splicing factor, argini 99.4 1.1E-12 3.8E-17 122.2 8.7 75 2-84 16-95 (115)
158 1wf0_A TDP-43, TAR DNA-binding 99.4 3.9E-13 1.3E-17 118.6 5.2 74 2-84 5-79 (88)
159 1b7f_A Protein (SXL-lethal pro 99.4 1.4E-12 4.9E-17 125.9 9.6 79 2-84 3-84 (168)
160 2f3j_A RNA and export factor b 99.4 9.4E-13 3.2E-17 132.3 8.2 81 2-86 88-170 (177)
161 3md3_A Nuclear and cytoplasmic 99.3 1.8E-12 6.3E-17 124.4 9.7 77 2-82 87-166 (166)
162 3zzy_A Polypyrimidine tract-bi 99.3 2E-12 7E-17 124.4 9.9 77 4-86 30-109 (130)
163 2e5i_A Heterogeneous nuclear r 99.3 3E-12 1E-16 122.2 10.8 75 5-86 28-105 (124)
164 3egn_A RNA-binding protein 40; 99.3 8.9E-13 3.1E-17 126.6 7.3 79 2-84 45-131 (143)
165 2g4b_A Splicing factor U2AF 65 99.3 2E-12 6.9E-17 125.6 9.1 75 2-80 94-171 (172)
166 1x5p_A Negative elongation fac 99.3 4.2E-12 1.5E-16 114.0 10.4 74 2-84 15-88 (97)
167 2dnl_A Cytoplasmic polyadenyla 99.3 1.3E-12 4.4E-17 121.3 6.7 73 1-80 7-85 (114)
168 1l3k_A Heterogeneous nuclear r 99.3 3.2E-12 1.1E-16 126.7 8.9 79 3-86 105-186 (196)
169 2qfj_A FBP-interacting repress 99.3 4.9E-12 1.7E-16 127.3 10.3 78 2-83 28-108 (216)
170 2yh0_A Splicing factor U2AF 65 99.3 3.8E-12 1.3E-16 126.4 9.4 79 2-84 114-195 (198)
171 2voo_A Lupus LA protein; RNA-b 99.3 3.2E-12 1.1E-16 130.0 8.4 76 2-82 109-186 (193)
172 2pe8_A Splicing factor 45; RRM 99.3 9.5E-12 3.2E-16 115.0 10.5 79 1-83 7-94 (105)
173 3nmr_A Cugbp ELAV-like family 99.3 7.7E-12 2.6E-16 121.3 10.0 76 3-81 96-175 (175)
174 3nmr_A Cugbp ELAV-like family 99.3 8.6E-12 2.9E-16 121.0 10.2 79 2-84 3-89 (175)
175 3pgw_S U1-70K; protein-RNA com 99.3 5.5E-12 1.9E-16 143.5 9.9 80 3-86 103-185 (437)
176 2cjk_A Nuclear polyadenylated 99.3 5.2E-12 1.8E-16 122.1 7.9 75 2-82 3-80 (167)
177 1qm9_A Polypyrimidine tract-bi 99.3 8.1E-12 2.8E-16 124.9 8.8 80 1-86 1-82 (198)
178 2adc_A Polypyrimidine tract-bi 99.2 1.9E-11 6.6E-16 126.1 11.3 79 2-86 34-113 (229)
179 2diu_A KIAA0430 protein; struc 99.2 1.8E-11 6E-16 111.6 9.4 69 3-82 9-83 (96)
180 1b7f_A Protein (SXL-lethal pro 99.2 1.6E-11 5.5E-16 118.5 9.7 75 2-80 89-168 (168)
181 2bz2_A Negative elongation fac 99.2 1.3E-11 4.6E-16 116.4 8.6 74 2-84 39-112 (121)
182 1fje_B Nucleolin RBD12, protei 99.2 1.4E-11 4.7E-16 120.4 8.9 76 2-83 99-174 (175)
183 2g4b_A Splicing factor U2AF 65 99.2 4.3E-11 1.5E-15 116.1 12.3 78 2-84 4-89 (172)
184 1fxl_A Paraneoplastic encephal 99.2 2.2E-11 7.7E-16 116.9 9.9 74 2-79 88-166 (167)
185 3pgw_A U1-A; protein-RNA compl 99.2 2.5E-11 8.4E-16 128.1 10.0 79 2-84 9-91 (282)
186 2yh0_A Splicing factor U2AF 65 99.2 2.9E-11 9.8E-16 120.1 8.7 76 1-84 3-89 (198)
187 3u1l_A PRE-mRNA-splicing facto 99.2 2.8E-11 9.6E-16 127.6 8.5 78 2-86 134-232 (240)
188 1fje_B Nucleolin RBD12, protei 99.2 1.1E-11 3.9E-16 121.0 4.7 77 2-84 13-92 (175)
189 2dit_A HIV TAT specific factor 99.2 4.6E-11 1.6E-15 110.6 8.4 78 2-84 15-103 (112)
190 3smz_A Protein raver-1, ribonu 99.2 8.9E-11 3.1E-15 124.0 11.5 93 3-106 96-191 (284)
191 3tyt_A Heterogeneous nuclear r 99.2 2.8E-11 9.7E-16 123.9 7.1 68 3-74 124-194 (205)
192 3sde_A Paraspeckle component 1 99.1 6.9E-11 2.4E-15 124.4 9.7 80 2-84 96-180 (261)
193 1qm9_A Polypyrimidine tract-bi 99.1 5.4E-11 1.8E-15 118.9 8.4 77 2-84 120-198 (198)
194 3smz_A Protein raver-1, ribonu 99.1 4.6E-11 1.6E-15 126.2 8.0 79 2-84 184-265 (284)
195 2adc_A Polypyrimidine tract-bi 99.1 1.1E-10 3.7E-15 120.5 10.7 77 2-84 151-229 (229)
196 1jmt_A Splicing factor U2AF 35 99.1 2.2E-11 7.4E-16 112.2 4.6 70 7-80 20-103 (104)
197 3pgw_A U1-A; protein-RNA compl 99.1 9.6E-11 3.3E-15 123.6 9.8 73 3-81 208-281 (282)
198 2ghp_A U4/U6 snRNA-associated 99.1 1.3E-10 4.5E-15 123.1 10.5 79 2-84 117-198 (292)
199 2ghp_A U4/U6 snRNA-associated 99.1 8.4E-11 2.9E-15 124.7 8.7 77 2-83 210-291 (292)
200 3sde_A Paraspeckle component 1 99.1 1.1E-10 3.6E-15 123.0 8.7 72 3-81 23-94 (261)
201 3tht_A Alkylated DNA repair pr 99.0 2.5E-10 8.7E-15 126.1 9.1 73 2-81 18-97 (345)
202 3v4m_A Splicing factor U2AF 65 99.0 3.3E-10 1.1E-14 104.5 7.8 78 2-83 5-97 (105)
203 3ue2_A Poly(U)-binding-splicin 99.0 6.7E-10 2.3E-14 104.9 7.9 77 2-82 20-108 (118)
204 2d9o_A DNAJ (HSP40) homolog, s 98.9 5E-09 1.7E-13 96.2 10.7 65 12-84 27-91 (100)
205 3s6e_A RNA-binding protein 39; 98.7 9.2E-09 3.1E-13 96.6 6.1 76 2-82 7-92 (114)
206 2dnr_A Synaptojanin-1; RRM dom 98.7 4.3E-08 1.5E-12 88.7 7.8 73 3-85 8-88 (91)
207 1owx_A Lupus LA protein, SS-B, 98.5 2E-07 7E-12 88.6 8.9 71 3-79 19-92 (121)
208 3dxb_A Thioredoxin N-terminall 98.5 2.4E-07 8.3E-12 94.9 7.9 66 13-82 140-212 (222)
209 1ufw_A Synaptojanin 2; RNP dom 98.3 4.7E-07 1.6E-11 82.4 5.4 67 3-79 16-91 (95)
210 2dhx_A Poly (ADP-ribose) polym 97.2 0.0014 4.8E-08 60.5 9.4 74 2-82 8-83 (104)
211 2l9w_A U4/U6 snRNA-associated- 97.0 0.0015 5.3E-08 60.9 7.8 74 2-79 21-96 (117)
212 2kn4_A Immunoglobulin G-bindin 94.9 0.038 1.3E-06 52.9 6.7 32 34-65 2-34 (158)
213 2i2y_A Fusion protein consists 90.9 0.4 1.4E-05 45.5 6.8 46 36-83 4-51 (150)
214 1wey_A Calcipressin 1; structu 88.5 0.64 2.2E-05 42.9 5.8 73 3-82 6-83 (104)
215 1wwh_A Nucleoporin 35, nucleop 87.3 1.5 5E-05 41.5 7.6 67 4-79 26-93 (119)
216 3pq1_A Poly(A) RNA polymerase; 83.2 0.51 1.7E-05 54.1 2.8 52 3-60 54-105 (464)
217 3ctr_A Poly(A)-specific ribonu 64.5 11 0.00038 34.6 5.9 62 5-75 9-70 (101)
218 1whv_A Poly(A)-specific ribonu 58.5 12 0.00041 34.3 5.0 60 5-73 19-78 (100)
219 1uw4_A UPF3X; nonsense mediate 51.1 53 0.0018 29.3 8.0 64 3-70 2-70 (91)
220 3p3d_A Nucleoporin 53; structu 42.2 34 0.0012 32.8 5.6 69 5-79 10-95 (132)
221 1b64_A Elongation factor 1-bet 33.8 51 0.0017 29.6 5.0 58 332-392 21-78 (91)
222 1f60_B Elongation factor EEF1B 30.4 55 0.0019 29.5 4.7 58 332-392 24-81 (94)
223 1gh8_A Translation elongation 29.4 52 0.0018 29.4 4.3 61 331-394 18-78 (89)
224 4ayb_A DNA-directed RNA polyme 26.2 32 0.0011 42.4 3.1 48 590-649 416-465 (880)
225 2g0c_A ATP-dependent RNA helic 26.0 95 0.0032 25.8 5.2 63 12-81 11-75 (76)
226 2yy3_A Elongation factor 1-bet 24.9 72 0.0025 28.6 4.4 60 331-393 20-80 (91)
227 3lu0_D DNA-directed RNA polyme 24.1 52 0.0018 42.3 4.4 50 589-650 419-470 (1407)
No 1
>2j7n_A RNA-dependent RNA polymerase; RNAI response, RNA-directed RNA polymerase, hydrolase; 2.30A {Neurospora crassa} PDB: 2j7o_A
Probab=100.00 E-value=4.1e-112 Score=1027.53 Aligned_cols=482 Identities=19% Similarity=0.290 Sum_probs=400.9
Q ss_pred CceeecCCeecccCceeccCCCCCCcEEEEEEEcCCCCccCCcccCCCccCCCcchhhhHHHHHHHHhhcC-eEecceEe
Q 035741 276 SKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNG-IVIGDKKF 354 (890)
Q Consensus 276 tri~l~~P~~e~sNRVlR~f~~~~drFLRV~F~DE~~~~l~~~~~~p~~~~~~~~~~~~i~~rv~~~L~~G-i~I~gR~y 354 (890)
.++.|.+|++++|||+.|+||+ ||||||+|++++....+ +.|... . ....+++|.++|.+| +.+.||+|
T Consensus 131 ~~l~L~p~~l~~s~R~~RrfGs--DrFL~V~fp~~~~~~~~---~~~~~~-~----~~~~~~~v~~~l~~~~~~~~gr~~ 200 (1022)
T 2j7n_A 131 YLVKLKPLMFEQGCRLTRRFGP--DRFFEILIPSPTSTSPS---VPPVVS-K----QPAAVEEVIQWLTMGQHSLVGRQW 200 (1022)
T ss_dssp EEEEECCCEEEECBHHHHHHCG--GGEEEEEEECTTCCCSS---SCTTSS-S----SSSCHHHHHHHHHSSCEEETTEEE
T ss_pred eEEEecCCccCCCceEEEeeCC--ceeEEEEecCCcccccc---ccchhc-c----chHHHHHHHHHHhcCcEEEeccee
Confidence 5899999999999999999996 99999999998654321 112111 0 111367888888777 56788888
Q ss_pred EEEeec---------cCccc--------cCeEEEEecC------------------------CCCCHHHHHHHhcCccCC
Q 035741 355 ETLAFS---------NSQER--------ENTLWMFASR------------------------PELTAADIRERMGDFREI 393 (890)
Q Consensus 355 ~FLa~S---------nSqLR--------e~s~wFfa~~------------------------~~~t~~~Ir~wmG~F~~i 393 (890)
+++-.- ..|+| ...||||+.+ ..+|+++||+|||+|+++
T Consensus 201 r~f~~~d~~~r~~~~~~~l~~~~~~~~~~~Rv~~f~~~G~~i~~~~f~fl~~s~lre~s~~~~~ls~~~ir~wmg~f~~n 280 (1022)
T 2j7n_A 201 RAFFAKDAGYRKPLREFQLRAEDPKPIIKERVHFFAETGITFRPDVFKTRSVVPAEEPVEQRTEFKVSQMLDWLLQLDNN 280 (1022)
T ss_dssp EEEEEEECC--------------CCCCCEEEEEEEEEEETTCBCCCC-------------CCBCCCHHHHHHHHHCGGGC
T ss_pred EEEeeccccccccccccccccccccccccceEEEEeccCccccCccccccccccccccccccCCCCHHHHHHhccChhhc
Confidence 844221 12332 2457777631 248999999999999986
Q ss_pred C--CHHHHHHHhccccccccCceeccc----------------------ceeeccHHHHHHHHHHcCCCCCCCceEEEee
Q 035741 394 K--NVTKYAARLGQSFASSREALHVDS----------------------NIGKISAELAETVAKKCGYAIYTPSAFQIRY 449 (890)
Q Consensus 394 ~--~vaK~aARlgq~FSsT~~tv~v~~----------------------GvG~IS~~lA~~I~~~l~l~~~~PSAfQiR~ 449 (890)
+ +++|||||||||||+|.+|+.|.+ |||+||+++|++|++++++ ..+||||||||
T Consensus 281 ~~q~~aK~aARigq~FS~T~~tv~v~~~~I~~~~dDI~~~~g~g~vFTDGvG~IS~~lA~~I~~~l~l-~~~PSAfQiR~ 359 (1022)
T 2j7n_A 281 TWQPHLKLFSRIQLGLSKTYAIMTLEPHQIRHHKTDLLSPSGTGEVMNDGVGRMSRSVAKRIRDVLGL-GDVPSAVQGRF 359 (1022)
T ss_dssp TTSBHHHHHHTTHHHHSBCEEEEECCGGGEEECSSCCBCTTSSCCBSSTTEEEECHHHHHHHHHHHTC-SSCCSEEEEEE
T ss_pred ccchHHHHHHHhhhhhcCccCcEEechHHEEEcCCccccCCCCCCeecCCchHhhHHHHHHHHHHcCC-CCCCcEEEEEe
Confidence 4 599999999999999999875422 9999999999999999999 57899999999
Q ss_pred cCee---------------EEeCCCccCCCCC-----CCceeEeecC-Ccccccccc--------c-CChHHHHHHHHHH
Q 035741 450 GGYK---------------VTLRNNMFKYKSE-----STSLDILANS-KYQREGVAR--------L-RLDNVFERKQREV 499 (890)
Q Consensus 450 gG~K---------------I~lRpSm~KF~s~-----~~~LeIv~~S-~~~p~~LNR--------L-V~d~vF~~lq~~~ 499 (890)
|||| |+|||||.||+++ +++||||++| +|.|++||| | |++++|++++.+.
T Consensus 360 gGaKGvl~vdp~~~~~~~~I~lRpSm~KF~~~~~d~~~~~LEIv~~s~~~~~~~LNRQlI~lL~~lGV~~~~f~~~i~~~ 439 (1022)
T 2j7n_A 360 GSAKGMWVIDVDDTGDEDWIETYPSQRKWECDFVDKHQRTLEVRSVASELKSAGLNLQLLPVLEDRARDKVKMRQAIGDR 439 (1022)
T ss_dssp TTEEEEEEECTTCCSCCCCEEECTTTBCSCCCCCSGGGSEEEEEEECCCCCCCCBCTTTHHHHHHTBSSHHHHHHHHHHH
T ss_pred ccceEEEEECcccCCCcceEEeCCcceeecCCCCCcccCeEEEEeecCCCCCceecHHHHHHHHhCCcCHHHHHHHHHHH
Confidence 9999 7899999999973 6899999997 589999999 3 9999998875544
Q ss_pred H-H-------HHHHHhcCHHHHHHHHHhcC------------------CCchHHHHHHHHHCCCCCCCchHHHHHHHHHH
Q 035741 500 V-A-------RLDAILTDSSKVQEALELMS------------------SAENTNVLKELLNCGYKPDAEPFLSMMPQTFH 553 (890)
Q Consensus 500 l-~-------~l~~~l~d~~~a~~~L~~~~------------------~~~~~~~l~~ll~~Gf~~~~ePfl~~lL~~~~ 553 (890)
+ + ....+++++..++.++.... +...++++..|+.+||+|.++|||+++++.++
T Consensus 440 ~~~~L~~~l~~~~~al~~~~~~r~~l~~~~~~~~~r~~~g~~~~~~glp~s~~~~l~~Ll~aGf~p~~epfL~~~l~~~~ 519 (1022)
T 2j7n_A 440 LINDLQRQFSEQKHALNRPVEFRQWVYESYSSRATRVSHGRVPFLAGLPDSQEETLNFLMNSGFDPKKQKYLQDIAWDLQ 519 (1022)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHSCCHHHHHHHTSCCEETTEESSHHHHHHHHHHTTCCTTTBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHhhccccccccccccchhhccCccchHHHHHHHHHcCCCccccHHHHHHHHHHH
Confidence 2 2 23455778877777664321 12345788999999999999999999999999
Q ss_pred HHHHHHHhhhcceeecCcceEEEeecCCCCCCCCc---------------------ceEEEeeCCCCCCCceEEEEEecC
Q 035741 554 ASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ---------------------GLMVVAKKPCLHPGDMRVLRAVDV 612 (890)
Q Consensus 554 ~~~L~~Lk~K~RI~Vp~s~~l~GV~DetG~L~~GE---------------------G~VlV~RnPclHPGDIr~v~AVd~ 612 (890)
..+|+.||+|+||+||+|++||||+||||+|+||| |+|||+|||||||||||+|+||++
T Consensus 520 ~~~l~~LK~k~rI~V~~s~~L~GV~DetG~L~eGEVfv~~s~~~~~~~~~~~~l~gg~VlVtRnP~lhPGDIrvv~AV~~ 599 (1022)
T 2j7n_A 520 KRKCDTLKSKLNIRVGRSAYIYMIADFWGVLEENEVHVGFSSKFRDEEESFTLLSDCDVLVARSPAHFPSDIQRVRAVFK 599 (1022)
T ss_dssp HHHHHHHHHHCCBCCSSEEEEEEEECTTSCCCTTEEEEEEEEEEEETTEEEEEECSEEEEEECSSCCSGGGEEEEEECCC
T ss_pred HHHHHHHHHhhccccccceEEEEEecCCCccCCCeEEEEeccccccCCCCceeecCceEEEEeCCCcCcCceeEEEeccC
Confidence 99999999999999999999999999999999998 589999999999999999999999
Q ss_pred CCCCCCCCeEEcCCCCCCCCCCcccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCcc-------ccc----C-------
Q 035741 613 PALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPE-------KIL----A------- 674 (890)
Q Consensus 613 P~L~hL~dVIVFp~kG~Rplps~lSGGDLDGD~Y~ViWD~~Lip~~~~~P~~Y~~~~~-------~~l----~------- 674 (890)
|+||||+||||||++|+||+||||||||||||+|||||||+|||++.+.|++..++.. ..+ +
T Consensus 600 PeL~hL~DvIVFp~kG~Rplps~lSGGDLDGD~Y~ViWD~~Lv~~f~na~~p~~p~~~~y~~k~~~~~~~~~~~~~~g~~ 679 (1022)
T 2j7n_A 600 PELHSLKDVIIFSTKGDVPLAKKLSGGDYDGDMAWVCWDPEIVDGFVNAEMPLEPDLSRYLKKDKTTFKQLMASHGTGSA 679 (1022)
T ss_dssp GGGTTCCSEEEECSCSSSCHHHHTTTCCSSSCEEEEECCHHHHHTBCCCCCCCCCCCTTTSEECCCBHHHHHTTTCSSHH
T ss_pred hhhhccCCeEEccCCCCCCChhHhcCCCCCCCeEEEEechhhcccccCCCCCCCCchhhhccccccchhhhhhccccccc
Confidence 9999999999999999999999999999999999999999999998776655333211 111 0
Q ss_pred -CCCCHHH-HHHHHHHhhccChhHHHHHHHHHHhccCCCCCCCCchHHHHHHHhhccccCCCCCcccc--CccccCCCCC
Q 035741 675 -RDVTIED-VEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATI--PSRLRVKIYP 750 (890)
Q Consensus 675 -~~vt~~d-i~~ffv~ym~~d~LG~is~aHl~~aD~~~~G~~~~~Cl~LA~L~S~AVD~~KTG~~v~i--p~~L~~~~~P 750 (890)
++++.+| +++||+.||++|.||+|||+|+..+|++ .|+.+++|++||+|||+||||||||+++++ |++|+++.||
T Consensus 680 ~~~~~~~d~i~~ff~~~m~~d~LG~is~~h~~~~~~~-~g~~~~~cl~LA~L~S~AVD~~KtG~pv~~~~~~~lr~~~~p 758 (1022)
T 2j7n_A 680 AKEQTTYDMIQKSFHFALQPNFLGMCTNYKERLCYIN-NSVSNKPAIILSSLVGNLVDQSKQGIVFNEASWAQLRRELLG 758 (1022)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH-TCSSSHHHHHHHHHHHHHTTHHHHTEECCHHHHHHHHHHHSC
T ss_pred cCchhHHHHHHHHHHHhcCcchHHHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHhhCccccCcccChhhhhhhhHhhCC
Confidence 1233344 5679999999999999999999888875 699999999999999999999999999998 8899999999
Q ss_pred CCcCCCCCCccccCCccchh
Q 035741 751 DFMEKQDKTWYESQHIVGNL 770 (890)
Q Consensus 751 dFMek~~~~~Y~S~kiLG~L 770 (890)
|||+ .++++|+|++++|+.
T Consensus 759 ~~m~-~~~p~Y~s~~~~g~~ 777 (1022)
T 2j7n_A 759 GALS-LPDPMYKSDSWLGRG 777 (1022)
T ss_dssp CSSC-CCCCGGGSSSCCSSS
T ss_pred CCCC-CCCCccccCcccCCC
Confidence 9999 678999999999984
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.67 E-value=1e-16 Score=146.10 Aligned_cols=77 Identities=14% Similarity=0.180 Sum_probs=73.4
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
+.+|||||||+++|+++|+++|++| |+|.+|+|+.|+ ++||||||+|++.++|++|+..+| |..++||.|+|+
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~---G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ln-g~~~~gr~l~V~ 94 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSI---GEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLN-GLRLQSKTIKVS 94 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTT---SCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHT-TCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhC-CCEECCEEEEEE
Confidence 4689999999999999999999999 999999999998 699999999999999999999998 899999999999
Q ss_pred cCCC
Q 035741 79 SAKR 82 (890)
Q Consensus 79 ea~~ 82 (890)
.|+|
T Consensus 95 ~AkP 98 (99)
T 4fxv_A 95 YARP 98 (99)
T ss_dssp ECCB
T ss_pred EeeC
Confidence 9875
No 3
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.65 E-value=9.5e-17 Score=143.91 Aligned_cols=79 Identities=22% Similarity=0.284 Sum_probs=73.4
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCc-eEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEE
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEG-TVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKA 77 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G-~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v 77 (890)
+++|+|+|||+++|+++|+++|++| | +|.+|+|+.|+ ++||||||+|++.++|++|++.++++..++||.|+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~---G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V 77 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSH---GVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSM 77 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHH---TCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHh---CCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEE
Confidence 5789999999999999999999999 9 89999999998 699999999999999999998876578999999999
Q ss_pred ecCCCC
Q 035741 78 SSAKRR 83 (890)
Q Consensus 78 ~ea~~d 83 (890)
+-|+++
T Consensus 78 ~~a~~~ 83 (91)
T 2lxi_A 78 HYSDPK 83 (91)
T ss_dssp ECCCSC
T ss_pred EEcCCC
Confidence 998754
No 4
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.63 E-value=6.3e-16 Score=144.02 Aligned_cols=78 Identities=19% Similarity=0.199 Sum_probs=73.9
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC-CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCC
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK-GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAK 81 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr-~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~ 81 (890)
.||||||||+++|+++|+++|++| |.|.+|+|+.|+ +|||||||+|++.++|++|+..+| |..++|+.|+|..|.
T Consensus 6 ~~lfV~nLp~~~te~~L~~~F~~~---G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~-~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 6 GNIFIKNLDKSIDNKALYDTFSAF---GNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN-GMLLNDRKVFVGRFK 81 (115)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHT-TCEETTEECEEEESS
T ss_pred CEEEECCCCCCCCHHHHHHHHhcc---CCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcC-CCEECCEEEEEEECC
Confidence 469999999999999999999999 999999999999 799999999999999999999998 799999999999987
Q ss_pred CCC
Q 035741 82 RRT 84 (890)
Q Consensus 82 ~di 84 (890)
++-
T Consensus 82 ~~~ 84 (115)
T 4f25_A 82 SRK 84 (115)
T ss_dssp CCC
T ss_pred Ccc
Confidence 654
No 5
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.63 E-value=2.2e-16 Score=140.38 Aligned_cols=80 Identities=10% Similarity=0.127 Sum_probs=69.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCc--eEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEE
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEG--TVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKA 77 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G--~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v 77 (890)
-||||||||+++|+++|+++|++| | +|.+++|+.|+ +|||||||+|.+.++|++|++.+| |..++||.|+|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~---G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~-g~~~~gr~i~V 77 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSL---GVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLP-KRELHGQNPVV 77 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTT---TCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGG-GSCSSSCCCEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHh---CCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcC-CCeeCCEEEEE
Confidence 379999999999999999999999 9 99999999998 699999999999999999999998 79999999999
Q ss_pred ecCCCCCCC
Q 035741 78 SSAKRRTPH 86 (890)
Q Consensus 78 ~ea~~di~p 86 (890)
..|.+...|
T Consensus 78 ~~~~~~~~~ 86 (90)
T 3p5t_L 78 TPSNKLEHH 86 (90)
T ss_dssp CCC------
T ss_pred EECCCCccc
Confidence 999887644
No 6
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.9e-15 Score=134.90 Aligned_cols=81 Identities=19% Similarity=0.181 Sum_probs=75.6
Q ss_pred CceEEEeCCCCCCCHHHHH----HHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEE
Q 035741 2 AKMIMLYGFASLASPKAVK----EFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKA 77 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~----~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v 77 (890)
+++|||||||+++|+++|+ ++|++| |+|.+|+|..|+..||||||+|++.++|++|+..+| |..++||.|+|
T Consensus 9 ~~~l~V~nL~~~~~~~~l~~~l~~~F~~~---G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~-g~~~~gr~l~V 84 (96)
T 2dgx_A 9 GADVQVSNIDYRLSRKELQQLLQEAFARH---GKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLH-RYKIGSKKILV 84 (96)
T ss_dssp CEEEEEESCCTTSCHHHHHHHHHHHHHHH---SCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHT-TEEETTEEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhcccc---CcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhC-CCEECCeEEEE
Confidence 4689999999999999999 999999 999999999999559999999999999999999998 89999999999
Q ss_pred ecCCCCCCC
Q 035741 78 SSAKRRTPH 86 (890)
Q Consensus 78 ~ea~~di~p 86 (890)
+.|++.-.|
T Consensus 85 ~~a~~~~~~ 93 (96)
T 2dgx_A 85 SLATGASGP 93 (96)
T ss_dssp EECCCSSCC
T ss_pred EEcCCCCCC
Confidence 999887644
No 7
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.59 E-value=3.3e-15 Score=138.87 Aligned_cols=78 Identities=17% Similarity=0.072 Sum_probs=73.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
.+||||+|||+++|+++|+++|++| |+|.+|+|+.|+ +|||||||+|++.++|++|++.+| |..++||.|+|.
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~---G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~ln-g~~~~gr~i~V~ 81 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKY---GEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLH-LTSVMGNIIHAQ 81 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTT---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-TCEETTEECEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhc---CCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhC-CCEECCeEEEEE
Confidence 4789999999999999999999999 999999999998 699999999999999999999998 899999999999
Q ss_pred cCCCC
Q 035741 79 SAKRR 83 (890)
Q Consensus 79 ea~~d 83 (890)
-|...
T Consensus 82 ~a~~~ 86 (110)
T 3s8s_A 82 LDIKG 86 (110)
T ss_dssp ECSTT
T ss_pred ECCCC
Confidence 88654
No 8
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.58 E-value=4.2e-15 Score=129.06 Aligned_cols=78 Identities=12% Similarity=0.065 Sum_probs=73.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
+.||||+|||+++|+++|+++|++| |.|.+++|+.++ ++||||||+|.+.++|++|+..+| |..++|+.|+|+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~---G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~-g~~~~g~~l~v~ 76 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDF---PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ-GQDLNGRPLRIN 76 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTS---TTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHT-TCEETTEECEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhc---CCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhc-CCeeCCcEEEEE
Confidence 4689999999999999999999999 999999999996 689999999999999999999888 799999999999
Q ss_pred cCCCC
Q 035741 79 SAKRR 83 (890)
Q Consensus 79 ea~~d 83 (890)
.|+++
T Consensus 77 ~a~~~ 81 (83)
T 3md1_A 77 WAAKL 81 (83)
T ss_dssp ECCCC
T ss_pred ecCcC
Confidence 98764
No 9
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.5e-15 Score=138.58 Aligned_cols=79 Identities=13% Similarity=0.098 Sum_probs=72.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHh-cCccccCceeEEecC
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLAR-ERLSYGNSFLKASSA 80 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~-~~~~~~gr~L~v~ea 80 (890)
+++|||||||+++|+++|+++|++| |+|.+|+|+.+ ||||||+|++.++|++|++.++ ++..++||.|+|+.|
T Consensus 16 ~~~LfV~nLp~~vte~dL~~lF~~f---G~V~~v~i~~~---kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 16 SRVIHIRKLPIDVTEGEVISLGLPF---GKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp CCEEEECSCCTTSCHHHHHHHHHHH---CCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 5789999999999999999999999 99999999954 8999999999999999999887 368999999999999
Q ss_pred CCCCCC
Q 035741 81 KRRTPH 86 (890)
Q Consensus 81 ~~di~p 86 (890)
+++-+.
T Consensus 90 ~~~~~~ 95 (105)
T 1sjq_A 90 NHKELK 95 (105)
T ss_dssp SSSSCC
T ss_pred CCCCCC
Confidence 877654
No 10
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.58 E-value=1.4e-15 Score=138.33 Aligned_cols=78 Identities=17% Similarity=0.201 Sum_probs=70.7
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCc--eEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcC---ccccCc
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEG--TVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARER---LSYGNS 73 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G--~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~---~~~~gr 73 (890)
+.||||+|||+++|+++|+++|++| | +|.+|+|+.|+ +|||||||+|.+.++|++|+..+|+. +.++||
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~---G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPY---ASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTT---CCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhh---CCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 4789999999999999999999999 7 57899999998 69999999999999999999999831 358999
Q ss_pred eeEEecCCC
Q 035741 74 FLKASSAKR 82 (890)
Q Consensus 74 ~L~v~ea~~ 82 (890)
.|+|+-|+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999998864
No 11
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.5e-15 Score=138.28 Aligned_cols=76 Identities=20% Similarity=0.301 Sum_probs=70.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
.+||||||||+++|+++|+++|++| |+|.+|.|..|+ +|||||||+|++.++|++|+. +| +..++|+.|+|..
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~---G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~-~~~~~gr~l~V~~ 85 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDK---GQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TP-GQKYKETDLLILF 85 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTS---SCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SS-CCCCTTTTCEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhc---CCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cC-CCEECCEEEEEEE
Confidence 5789999999999999999999999 999999999998 699999999999999999999 55 8999999999986
Q ss_pred CCC
Q 035741 80 AKR 82 (890)
Q Consensus 80 a~~ 82 (890)
+.+
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 543
No 12
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.57 E-value=5.5e-15 Score=129.44 Aligned_cols=78 Identities=14% Similarity=0.125 Sum_probs=72.3
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
..+|||+|||+++|+++|+++|++| |.|.+++|..++ ++||||||+|.+.++|++|+..+| |..++|+.|+|+
T Consensus 6 ~~~l~v~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~v~ 81 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIAAAFAPF---GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG-GQWLGGRQIRTN 81 (87)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-TCEETTEECEEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhc---CCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC-CCEECCeEEEEE
Confidence 3589999999999999999999999 999999999997 699999999999999999999998 799999999999
Q ss_pred cCCCC
Q 035741 79 SAKRR 83 (890)
Q Consensus 79 ea~~d 83 (890)
.|+++
T Consensus 82 ~a~~k 86 (87)
T 3bs9_A 82 WATRK 86 (87)
T ss_dssp EEC--
T ss_pred ecCCC
Confidence 98764
No 13
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.57 E-value=7.7e-15 Score=131.60 Aligned_cols=81 Identities=15% Similarity=0.212 Sum_probs=75.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
+++|||||||+++|+++|+++|++| |.|.+++|+.|+ ++||||||+|++.++|++|+..+| |..++|+.|+|+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~-g~~~~g~~l~V~ 77 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNV---GPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLN-GYQLGSRFLKCG 77 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTT---SCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHT-TCEETTEECEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhc---CCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhC-CCeECCeEEEEE
Confidence 4789999999999999999999999 999999999997 689999999999999999999998 799999999999
Q ss_pred cCCCCCCC
Q 035741 79 SAKRRTPH 86 (890)
Q Consensus 79 ea~~di~p 86 (890)
.|+++-.+
T Consensus 78 ~a~~~~~~ 85 (96)
T 2x1f_A 78 YSSNSDIS 85 (96)
T ss_dssp ECSCSSGG
T ss_pred EcCCCCCC
Confidence 99876544
No 14
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.57 E-value=5.7e-15 Score=133.05 Aligned_cols=75 Identities=15% Similarity=0.183 Sum_probs=70.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecC
Q 035741 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSA 80 (890)
Q Consensus 1 M~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea 80 (890)
|+..||||||++.+|+++|+++|++| |+|.++++.. |||||||||.+.++|++|+..+| +..++||.|+|+.|
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~---G~V~~~~l~~---~kGfaFVey~~~~eA~~Ai~~Ln-~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQH---GPLVSFHPYL---NQGIALCKYTTREEANKAQMALN-NCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHH---SCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHT-TEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhh---CCEEEEEEcC---CCcEEEEEECCHHHHHHHHHHhc-CCEECCcEEEEEEC
Confidence 56679999999999999999999999 9999999984 89999999999999999999998 79999999999998
Q ss_pred CC
Q 035741 81 KR 82 (890)
Q Consensus 81 ~~ 82 (890)
.+
T Consensus 79 ~e 80 (89)
T 2wbr_A 79 SE 80 (89)
T ss_dssp CH
T ss_pred CH
Confidence 53
No 15
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.1e-14 Score=131.00 Aligned_cols=81 Identities=11% Similarity=0.139 Sum_probs=75.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
+++|||+|||+++|+++|+++|++| |.|.+|+|+.|+ ++||||||+|.+.++|++|+..+| +..++|+.|+|.
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~V~ 83 (99)
T 1whw_A 8 SGRLFVRNLSYTSSEEDLEKLFSAY---GPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVD-GQVFQGRMLHVL 83 (99)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHHTT---SCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTT-TEESSSCEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhC-CCEECCcEEEEE
Confidence 4689999999999999999999999 999999999998 699999999999999999999988 799999999999
Q ss_pred cCCCCCCC
Q 035741 79 SAKRRTPH 86 (890)
Q Consensus 79 ea~~di~p 86 (890)
.|+++--+
T Consensus 84 ~a~~~~~~ 91 (99)
T 1whw_A 84 PSTIKKEA 91 (99)
T ss_dssp ECCCCSTT
T ss_pred EcCCCccc
Confidence 99887643
No 16
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.57 E-value=9.2e-15 Score=134.68 Aligned_cols=78 Identities=19% Similarity=0.165 Sum_probs=71.3
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhc-CccccCceeEEecC
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARE-RLSYGNSFLKASSA 80 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~-~~~~~gr~L~v~ea 80 (890)
+++|||+|||+++|+++|+++|++| |+|.+|.|+ ++||||||||++.++|++|+..+|+ .+.++||.|+|+-|
T Consensus 21 s~~l~V~NLp~~~te~~L~~lF~~f---G~V~~v~i~---~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 21 SPVVHIRGLIDGVVEADLVEALQEF---GPISYVVVM---PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEE---TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHhcc---CCEEEEEEE---cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 5789999999999999999999999 999999998 5789999999999999999999983 34689999999999
Q ss_pred CCCCC
Q 035741 81 KRRTP 85 (890)
Q Consensus 81 ~~di~ 85 (890)
+.+.+
T Consensus 95 ~~k~l 99 (100)
T 3r27_A 95 TSQKI 99 (100)
T ss_dssp SCSCC
T ss_pred ccccc
Confidence 87653
No 17
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.56 E-value=1.9e-15 Score=137.38 Aligned_cols=77 Identities=17% Similarity=0.138 Sum_probs=73.0
Q ss_pred CceEEEeCCCC------CCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccC
Q 035741 2 AKMIMLYGFAS------LASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGN 72 (890)
Q Consensus 2 ~kti~Vgnlp~------~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~g 72 (890)
++||||+|||+ ++++++|+++|++| |+|.+|+|..|+ +|||||||+|.+.++|++|+..+| |..++|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~---G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ln-g~~~~g 81 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKA---GKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFH-GKRLDL 81 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTT---SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT-TCBSSS
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhc---CCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhC-CcccCC
Confidence 57899999999 99999999999999 999999999998 599999999999999999999998 799999
Q ss_pred -ceeEEecCCC
Q 035741 73 -SFLKASSAKR 82 (890)
Q Consensus 73 -r~L~v~ea~~ 82 (890)
|.|+|+.|.+
T Consensus 82 ~r~l~V~~a~~ 92 (100)
T 3ns6_A 82 KHRLFLYTMKD 92 (100)
T ss_dssp SCBCEEEESHH
T ss_pred CeEEEEEECch
Confidence 9999998854
No 18
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.56 E-value=8.3e-15 Score=128.82 Aligned_cols=78 Identities=15% Similarity=0.181 Sum_probs=72.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
.+||||+|||+++|+++|+++|++| |.|.+++|..|+ ++||||||+|.+.++|++|+ .+| +..++|+.|+|.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~-g~~~~g~~l~V~ 80 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGC---GSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALD-ESLFRGRQIKVI 80 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGG---CCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGT-TCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC---CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcC-CCEECCcEEEEE
Confidence 3689999999999999999999999 999999999997 69999999999999999999 776 799999999999
Q ss_pred cCCCCC
Q 035741 79 SAKRRT 84 (890)
Q Consensus 79 ea~~di 84 (890)
.|++..
T Consensus 81 ~a~~~~ 86 (89)
T 3ucg_A 81 PKRTNR 86 (89)
T ss_dssp ETTTTS
T ss_pred EccCCC
Confidence 998754
No 19
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.55 E-value=1e-14 Score=127.71 Aligned_cols=78 Identities=12% Similarity=0.115 Sum_probs=73.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---C-CCceEEEEecCHHHHHHHHHHHhcCccccCceeEE
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---G-SRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKA 77 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~-sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v 77 (890)
.++|||+|||+++|+++|+++|++| |.|.+++|..++ + +||||||+|.+.++|++|+..+| |..++|+.|+|
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~v 79 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTY---GKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMD-GGQIDGQEITA 79 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTT---SCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHT-TCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC---CCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcC-CCeECCeEEEE
Confidence 4689999999999999999999999 999999999998 3 99999999999999999999888 89999999999
Q ss_pred ecCCCC
Q 035741 78 SSAKRR 83 (890)
Q Consensus 78 ~ea~~d 83 (890)
+.|.+.
T Consensus 80 ~~a~~~ 85 (88)
T 4a8x_A 80 TAVLAP 85 (88)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 998654
No 20
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=2.1e-14 Score=127.94 Aligned_cols=81 Identities=9% Similarity=0.135 Sum_probs=75.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
+.+|||+|||+++|+++|+++|++| |+|..++|..|+ ++||||||+|.+.++|++|+..+| +..++|+.|+|+
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~---G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~V~ 80 (95)
T 2dnz_A 5 SSGLYVGSLHFNITEDMLRGIFEPF---GKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLN-GFELAGRPMRVG 80 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTT---SCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHT-TCCSSSSCCEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhc---CCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhC-CCeeCCcEEEEE
Confidence 4689999999999999999999999 999999999997 699999999999999999999888 799999999999
Q ss_pred cCCCCCCC
Q 035741 79 SAKRRTPH 86 (890)
Q Consensus 79 ea~~di~p 86 (890)
.|+++--+
T Consensus 81 ~a~~~~~~ 88 (95)
T 2dnz_A 81 HVTERLDG 88 (95)
T ss_dssp ESSCCCCC
T ss_pred EcccccCC
Confidence 99887643
No 21
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.2e-14 Score=130.07 Aligned_cols=81 Identities=16% Similarity=0.194 Sum_probs=76.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC-CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecC
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK-GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSA 80 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr-~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea 80 (890)
.++|||+|||+++|+++|+++|++| |+|.+|+|..|+ ++||||||+|.+.++|++|+..+| +..++|+.|+|..|
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~f~~~---G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 15 PKRLHVSNIPFRFRDPDLRQMFGQF---GKILDVEIIFNERGSKGFGFVTFENSADADRAREKLH-GTVVEGRKIEVNNA 90 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGGT---SCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHT-TCEETTEECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhC-CCEECCEEEEEEEc
Confidence 4789999999999999999999999 999999999998 799999999999999999999888 79999999999999
Q ss_pred CCCCCC
Q 035741 81 KRRTPH 86 (890)
Q Consensus 81 ~~di~p 86 (890)
+++..+
T Consensus 91 ~~~~~~ 96 (103)
T 2cq3_A 91 TARVMT 96 (103)
T ss_dssp CSSCCC
T ss_pred ccCCCC
Confidence 887643
No 22
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2e-14 Score=130.26 Aligned_cols=80 Identities=9% Similarity=0.063 Sum_probs=75.4
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC-CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecC
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK-GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSA 80 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr-~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea 80 (890)
.++|||+|||+++|+++|+++|++| |.|.+|+|+.|+ .+||||||+|.+.++|++|+..+| +..++|+.|+|..|
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 15 PRTLYVGNLSRDVTEVLILQLFSQI---GPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMN-GRKILGKEVKVNWA 90 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHH---SCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHT-TEEETTEEEEEEEC
T ss_pred CCEEEEeCCCccCCHHHHHHHHHhc---CCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhC-CCCcCCCeEEEEEC
Confidence 4689999999999999999999999 999999999999 799999999999999999999888 79999999999999
Q ss_pred CCCCC
Q 035741 81 KRRTP 85 (890)
Q Consensus 81 ~~di~ 85 (890)
+++--
T Consensus 91 ~~~~~ 95 (103)
T 2cqi_A 91 TTPSS 95 (103)
T ss_dssp CCTTC
T ss_pred CCCcc
Confidence 88653
No 23
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.55 E-value=1.1e-14 Score=126.90 Aligned_cols=76 Identities=17% Similarity=0.202 Sum_probs=71.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
.++|||+|||+++|+++|+++|++| |.|.+++|..|+ ++||||||+|.+.++|++|+..+| |..++|+.|+|+
T Consensus 7 ~~~l~V~nl~~~~~~~~l~~~f~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~v~ 82 (85)
T 3mdf_A 7 KRVLYVGGLAEEVDDKVLHAAFIPF---GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN-ESELFGRTIRVN 82 (85)
T ss_dssp SSEEEEECCCTTCCHHHHHHHHGGG---SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT-TCEETTEECEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHhcc---CCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhC-CCEECCcEEEEE
Confidence 4689999999999999999999999 999999999986 599999999999999999999888 799999999999
Q ss_pred cCC
Q 035741 79 SAK 81 (890)
Q Consensus 79 ea~ 81 (890)
.|+
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 774
No 24
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=9.9e-15 Score=132.35 Aligned_cols=81 Identities=19% Similarity=0.252 Sum_probs=76.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
+++|||+|||+++|+++|+++|++| |+|.+|+|..++ ++||||||+|.+.++|++|+..+| +..++|+.|+|.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~f~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~v~ 90 (103)
T 2cq0_A 15 NATIRVTNLSEDTRETDLQELFRPF---GSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVS-GFGYDHLILNVE 90 (103)
T ss_dssp SEEEEEESCCTTCCHHHHHTTSTTT---CCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTT-TCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC---CCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcC-CCeeCCcEEEEE
Confidence 4689999999999999999999999 999999999997 699999999999999999999998 799999999999
Q ss_pred cCCCCCCC
Q 035741 79 SAKRRTPH 86 (890)
Q Consensus 79 ea~~di~p 86 (890)
.|+++--+
T Consensus 91 ~a~~~~~~ 98 (103)
T 2cq0_A 91 WAKPSTNS 98 (103)
T ss_dssp ESSCCCCS
T ss_pred ECCCCCCC
Confidence 99887744
No 25
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.6e-14 Score=129.97 Aligned_cols=78 Identities=14% Similarity=0.213 Sum_probs=73.4
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
.++|||+|||+++|+++|+++|++| |+|..|+|+.|+ ++||||||+|++.++|++|++ +| +..++|+.|+|.
T Consensus 10 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~-~~~~~g~~l~V~ 84 (99)
T 2dgs_A 10 SNKIFVGGIPHNCGETELREYFKKF---GVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MH-FHDIMGKKVEVK 84 (99)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHSSS---SCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HC-CCBSSSCBCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hC-CCEECCeEEEEE
Confidence 4789999999999999999999999 999999999997 699999999999999999999 66 799999999999
Q ss_pred cCCCCC
Q 035741 79 SAKRRT 84 (890)
Q Consensus 79 ea~~di 84 (890)
.|+++-
T Consensus 85 ~a~~~~ 90 (99)
T 2dgs_A 85 RAEPRD 90 (99)
T ss_dssp ECCCCC
T ss_pred ECCCCc
Confidence 998765
No 26
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.6e-14 Score=130.31 Aligned_cols=79 Identities=15% Similarity=0.259 Sum_probs=74.3
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
.++|||+|||+++|+++|+++|++| |.|..++|..|+ ++||||||+|.+.++|++|+..+| +..++|+.|+|..
T Consensus 17 ~~~l~v~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~v~~ 92 (100)
T 2do4_A 17 KHKLFISGLPFSCTKEELEEICKAH---GTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMD-GMTIKENIIKVAI 92 (100)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTT---SCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT-TEESSSCEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC---CCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhC-CCEECCEEEEEEE
Confidence 4689999999999999999999999 999999999999 799999999999999999999998 7999999999999
Q ss_pred CCCCC
Q 035741 80 AKRRT 84 (890)
Q Consensus 80 a~~di 84 (890)
|+++-
T Consensus 93 a~~~~ 97 (100)
T 2do4_A 93 SNSGP 97 (100)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 87653
No 27
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=8.4e-15 Score=131.70 Aligned_cols=81 Identities=15% Similarity=0.153 Sum_probs=76.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhccCCceEE-EEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCce--
Q 035741 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVS-GVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSF-- 74 (890)
Q Consensus 1 M~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~-s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~-- 74 (890)
++++|||||||+++|+++|+++|++| |.|. +++|+.|+ ++||||||+|.+.++|++|+..+| |..++|+.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~~~ 83 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATM---GETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKIN-GKPLPGATPA 83 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHT---TCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTT-TSEESSCSSC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHh---CCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHc-CCccCCCCcc
Confidence 46899999999999999999999999 9999 99999998 699999999999999999999888 79999999
Q ss_pred --eEEecCCCCCC
Q 035741 75 --LKASSAKRRTP 85 (890)
Q Consensus 75 --L~v~ea~~di~ 85 (890)
|+|+.|++.-.
T Consensus 84 ~~l~v~~a~~~~~ 96 (99)
T 2div_A 84 KRFKLNYATYSGP 96 (99)
T ss_dssp EECCEEETTCCSS
T ss_pred eeEEEeecCCCCC
Confidence 99999987753
No 28
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.5e-14 Score=131.20 Aligned_cols=79 Identities=14% Similarity=0.198 Sum_probs=75.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCC
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAK 81 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~ 81 (890)
.++|||+|||+++|+++|+++|++| |.|..|+|..++++||||||+|++.++|++|+..+| +..++|+.|+|..|+
T Consensus 22 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 22 DCRIYVGNLPPDIRTKDIEDVFYKY---GAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRD-GYDYDGYRLRVEFPR 97 (109)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHT-TCEETTEECEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcC-CCEECCeEEEEEEcc
Confidence 3689999999999999999999999 999999999888999999999999999999999988 789999999999998
Q ss_pred CCC
Q 035741 82 RRT 84 (890)
Q Consensus 82 ~di 84 (890)
++-
T Consensus 98 ~~~ 100 (109)
T 1x4a_A 98 SGR 100 (109)
T ss_dssp CCC
T ss_pred cCC
Confidence 876
No 29
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=8.4e-15 Score=135.18 Aligned_cols=76 Identities=12% Similarity=0.103 Sum_probs=69.8
Q ss_pred CceEEEeCCCC-CCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHh-cCccccCceeEEec
Q 035741 2 AKMIMLYGFAS-LASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLAR-ERLSYGNSFLKASS 79 (890)
Q Consensus 2 ~kti~Vgnlp~-~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~-~~~~~~gr~L~v~e 79 (890)
+++|||||||+ ++|++||+++|++| |+|.+|.|+. .||||||||++.++|++|+..+| .+..+.||.|+|+.
T Consensus 15 ~~~l~V~nLp~~~~te~dL~~lF~~f---G~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 15 RRVVHIMDFQRGKNLRYQLLQLVEPF---GVISNHLILN---KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCEEEEESCCCSSSHHHHHHTTTGGG---SCEEEEEECS---SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHhc---CCEEEEEEEc---CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 57899999999 99999999999999 9999999984 56999999999999999999988 35679999999999
Q ss_pred CCCC
Q 035741 80 AKRR 83 (890)
Q Consensus 80 a~~d 83 (890)
|+..
T Consensus 89 a~~~ 92 (102)
T 1x4d_A 89 SQKY 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 9753
No 30
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.6e-14 Score=130.89 Aligned_cols=79 Identities=16% Similarity=0.212 Sum_probs=74.7
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
+++|||+|||+++|+++|+++|++| |.|..|+|..|+ ++||||||+|.+.++|++|+..+| +..++|+.|+|.
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~V~ 88 (103)
T 2dnm_A 13 MITLKVDNLTYRTSPDSLRRVFEKY---GRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMD-GAELDGRELRVQ 88 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTT---SCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHS-SCCBTTBCCEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcC-CCEECCcEEEEE
Confidence 4689999999999999999999999 999999999998 699999999999999999999888 799999999999
Q ss_pred cCCCCC
Q 035741 79 SAKRRT 84 (890)
Q Consensus 79 ea~~di 84 (890)
.|++.-
T Consensus 89 ~a~~~~ 94 (103)
T 2dnm_A 89 VARYGR 94 (103)
T ss_dssp ECSSCC
T ss_pred ECCcCC
Confidence 998765
No 31
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.7e-14 Score=131.13 Aligned_cols=79 Identities=15% Similarity=0.228 Sum_probs=74.7
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
.++|||+|||+++|+++|+++|++| |.|..|+|..|+ ++||||||+|.+.++|++|+..+| +..++|+.|+|.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~v~ 90 (105)
T 1x5u_A 15 DATVYVGGLDEKVSEPLLWELFLQA---GPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMD-MIKLYGKPIRVN 90 (105)
T ss_dssp TTEEEEECCCTTCCHHHHHHHHHTT---SCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSS-SCBCSSCBCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhC-CCeECCeEEEEE
Confidence 4689999999999999999999999 999999999998 699999999999999999999988 799999999999
Q ss_pred cCCCCC
Q 035741 79 SAKRRT 84 (890)
Q Consensus 79 ea~~di 84 (890)
.|+++-
T Consensus 91 ~a~~~~ 96 (105)
T 1x5u_A 91 KASAHN 96 (105)
T ss_dssp ETTTTS
T ss_pred ECCCCC
Confidence 997765
No 32
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.6e-14 Score=131.47 Aligned_cols=79 Identities=11% Similarity=0.131 Sum_probs=73.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
+.+|||||||+++|+++|+++|++| |.|.+|+|..|+ ++||||||+|.+.++|++|+..+| |..++|+.|+|.
T Consensus 23 ~~~l~V~nlp~~~t~~~l~~~f~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~V~ 98 (106)
T 1p27_B 23 GWILFVTGVHEEATEEDIHDKFAEY---GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLN-GQDLMGQPISVD 98 (106)
T ss_dssp BEEEEEECCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHT-TCBSSSSBCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcc---CCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhc-CCEECCcEEEEE
Confidence 3579999999999999999999999 999999999998 689999999999999999999888 799999999999
Q ss_pred cCCCCC
Q 035741 79 SAKRRT 84 (890)
Q Consensus 79 ea~~di 84 (890)
.|+++-
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 987654
No 33
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.7e-14 Score=129.46 Aligned_cols=81 Identities=14% Similarity=0.161 Sum_probs=75.4
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC------CCCceEEEEecCHHHHHHHHHHHhcCccccCcee
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK------GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFL 75 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr------~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L 75 (890)
.++|||+|||+++|+++|+++|++| |+|.+|+|..++ ++||||||+|.+.++|++|+..+| +..++|+.|
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l 80 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLKGVFSKV---GAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQ-GHTVDGHKL 80 (98)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTT---SCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHST-TCEETTEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhC-CCeeCCeEE
Confidence 4689999999999999999999999 999999999876 478999999999999999999998 799999999
Q ss_pred EEecCCCCCCC
Q 035741 76 KASSAKRRTPH 86 (890)
Q Consensus 76 ~v~ea~~di~p 86 (890)
+|..|+++--+
T Consensus 81 ~V~~a~~~~~~ 91 (98)
T 2cpf_A 81 EVRISERATKP 91 (98)
T ss_dssp EEECSSCSSCC
T ss_pred EEEEccCCCCC
Confidence 99999888755
No 34
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.54 E-value=1.3e-14 Score=130.93 Aligned_cols=76 Identities=14% Similarity=0.232 Sum_probs=71.6
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEE--------EEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccc
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSG--------VEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSY 70 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s--------~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~ 70 (890)
..+|||||||+++|+++|+++|++| |.|.. ++|..|+ ++||||||+|.+.++|++|+..+| |..+
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~-g~~~ 88 (99)
T 2la6_A 13 NNTIFVQGLGENVTIESVADYFKQI---GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD-GKEF 88 (99)
T ss_dssp CSEEEEECCCSSCCHHHHHHHHTTT---SCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHT-TCBS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHh---CCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhC-CCEe
Confidence 4689999999999999999999999 99999 9999997 699999999999999999999888 7999
Q ss_pred cCceeEEecCC
Q 035741 71 GNSFLKASSAK 81 (890)
Q Consensus 71 ~gr~L~v~ea~ 81 (890)
+|+.|+|+.|+
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999874
No 35
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.3e-14 Score=131.14 Aligned_cols=81 Identities=16% Similarity=0.170 Sum_probs=75.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
.++|||+|||+++|+++|+++|++| |+|.+|+|+.|+ ++||||||+|++.++|++|+..+| +..++|+.|+|.
T Consensus 12 ~~~l~V~nLp~~~t~~~l~~~f~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~V~ 87 (102)
T 2cqb_A 12 KRVLYVGGLAEEVDDKVLHAAFIPF---GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN-ESELFGRTIRVN 87 (102)
T ss_dssp CSCEEEESCCSSCCHHHHHHHHTTT---SCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHT-TEEETTEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhhcc---CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhC-CCEECCcEEEEE
Confidence 4689999999999999999999999 999999999997 699999999999999999999888 799999999999
Q ss_pred cCCCCCCC
Q 035741 79 SAKRRTPH 86 (890)
Q Consensus 79 ea~~di~p 86 (890)
.|+++-..
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99887644
No 36
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=2.3e-14 Score=130.37 Aligned_cols=79 Identities=15% Similarity=0.180 Sum_probs=74.6
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeec-C---CCCceEEEEecCHHHHHHHHHHH-hcCccccCceeE
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQN-K---GSRAHAIVEFTTVEAADFIKCLA-RERLSYGNSFLK 76 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~d-r---~sRgfgfVem~~~~~a~~a~~~~-~~~~~~~gr~L~ 76 (890)
..+|||+|||+++|+++|+++|++| |+|.+|+|..+ + ++||||||+|.+.++|++|+..+ | +..++|+.|+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~-~~~~~g~~l~ 90 (107)
T 2cph_A 15 TSKILVRNIPFQANQREIRELFSTF---GELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCH-STHLYGRRLV 90 (107)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTT---SCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHT-CCBSSSCBCE
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHcc---CCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhcc-CCeECCCEEE
Confidence 4689999999999999999999999 99999999999 5 69999999999999999999999 6 7999999999
Q ss_pred EecCCCCC
Q 035741 77 ASSAKRRT 84 (890)
Q Consensus 77 v~ea~~di 84 (890)
|..|+++-
T Consensus 91 v~~a~~~~ 98 (107)
T 2cph_A 91 LEWADSEV 98 (107)
T ss_dssp EEECCCCC
T ss_pred EEeCCCCC
Confidence 99998775
No 37
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.53 E-value=2e-14 Score=127.29 Aligned_cols=81 Identities=15% Similarity=0.152 Sum_probs=75.6
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC-CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecC
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK-GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSA 80 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr-~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea 80 (890)
+.+|||+|||+++|+++|+++|++| |+|.+++|..+. ++||||||+|.+.++|++|+..+| +..++|+.|+|..|
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~f~~~---G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~-g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 8 ACQIFVRNLPFDFTWKMLKDKFNEC---GHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMN-GMKLSGREIDVRID 83 (92)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTT---SCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHT-TCCBTTBCCCCEEC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhC-CCEECCcEEEEEEc
Confidence 4689999999999999999999999 999999999877 799999999999999999999998 79999999999999
Q ss_pred CCCCCC
Q 035741 81 KRRTPH 86 (890)
Q Consensus 81 ~~di~p 86 (890)
+++--|
T Consensus 84 ~~~~~~ 89 (92)
T 2dgv_A 84 RNASGP 89 (92)
T ss_dssp SCCSSC
T ss_pred CCCCCC
Confidence 887643
No 38
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=9.6e-15 Score=134.76 Aligned_cols=79 Identities=16% Similarity=0.210 Sum_probs=75.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC-CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecC
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK-GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSA 80 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr-~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea 80 (890)
.++|||||||+++|+++|+++|++| |+|.+++|..|+ ++||||||+|.+.++|++|+..+| |..++|+.|+|..|
T Consensus 29 ~~~l~V~nLp~~~te~~l~~~F~~~---G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~-g~~~~g~~l~V~~a 104 (109)
T 2err_A 29 PKRLHVSNIPFRFRDPDLRQMFGQF---GKILDVEIIFNERGSKGFGFVTFENSADADRAREKLH-GTVVEGRKIEVNNA 104 (109)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGGT---CCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHT-TCEETTEECEEEEC
T ss_pred CCEEEEECCCCcCCHHHHHHHHHhc---CCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcC-CCEECCEEEEEEEC
Confidence 4789999999999999999999999 999999999998 799999999999999999999988 79999999999999
Q ss_pred CCCC
Q 035741 81 KRRT 84 (890)
Q Consensus 81 ~~di 84 (890)
+++.
T Consensus 105 ~~~~ 108 (109)
T 2err_A 105 TARV 108 (109)
T ss_dssp CCSC
T ss_pred CCCc
Confidence 8765
No 39
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.3e-14 Score=132.84 Aligned_cols=88 Identities=13% Similarity=0.101 Sum_probs=79.4
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
.+||||+|||+++|+++|+++|++| |+|.+|+|+.++ ++||||||+|.+.++|++|+..++ + .++|+.|+|.
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~-~-~~~g~~l~V~ 91 (116)
T 2cqd_A 17 FTKIFVGGLPYHTTDASLRKYFEGF---GDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-P-IIDGRKANVN 91 (116)
T ss_dssp SSEEEEECCCSSCCHHHHHHHHHTT---SCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSS-C-EETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC---CCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCC-C-cCCCEEEEEE
Confidence 3689999999999999999999999 999999999997 699999999999999999999987 6 8999999999
Q ss_pred cCCCCCCCCCCCCcccc
Q 035741 79 SAKRRTPHFAKRTPHYK 95 (890)
Q Consensus 79 ea~~di~p~rp~~~~~~ 95 (890)
.|++.--| ++..+...
T Consensus 92 ~a~~~~~~-~~~~~~~~ 107 (116)
T 2cqd_A 92 LAYLGAKP-RSLQTGFA 107 (116)
T ss_dssp ESTTTCCC-CCCCCCCS
T ss_pred EcccCCCc-cccCCCcc
Confidence 99888767 66544333
No 40
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.53 E-value=1.9e-14 Score=133.17 Aligned_cols=81 Identities=14% Similarity=0.162 Sum_probs=75.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
..+|||+|||+++|+++|+++|++| |.|..|+|+.|+ ++||||||+|.+.++|++|+..+| +..++|+.|+|.
T Consensus 25 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~V~ 100 (115)
T 2cpz_A 25 GANLFIYHLPQEFGDQDLLQMFMPF---GNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMN-GFQIGMKRLKVQ 100 (115)
T ss_dssp TCCEEEESCCSSCCHHHHHHHHGGG---SCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHT-TCEETTEECEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcC-CCEECCEEEEEE
Confidence 3689999999999999999999999 999999999998 699999999999999999999998 799999999999
Q ss_pred cCCCCCCC
Q 035741 79 SAKRRTPH 86 (890)
Q Consensus 79 ea~~di~p 86 (890)
.|+++--.
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpz_A 101 LKRSKNDS 108 (115)
T ss_dssp CCCCSCCC
T ss_pred EcCCCCcC
Confidence 99887644
No 41
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.53 E-value=2.3e-14 Score=134.48 Aligned_cols=83 Identities=13% Similarity=0.099 Sum_probs=78.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
+.+|||+|||+++|+++|+++|++| |+|.+|+|..|+ ++||||||+|.+.++|++|+..+| |..++|+.|+|+.
T Consensus 35 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~-g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 35 GAKLLVSNLDFGVSDADIQELFAEF---GTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYK-GVPLDGRPMDIQL 110 (124)
T ss_dssp CEEEEEESCCSSCCHHHHHHHHHTT---SCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHT-TEESSSCEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcC-CCEECCcEEEEEE
Confidence 4689999999999999999999999 999999999998 699999999999999999999888 7999999999999
Q ss_pred CCCCCCCCCC
Q 035741 80 AKRRTPHFAK 89 (890)
Q Consensus 80 a~~di~p~rp 89 (890)
|.+...+ .|
T Consensus 111 a~~~~~~-~~ 119 (124)
T 2kt5_A 111 VASQIDL-EH 119 (124)
T ss_dssp ECCTTCC-CC
T ss_pred eCCCCCC-CC
Confidence 9998877 44
No 42
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.4e-14 Score=127.31 Aligned_cols=77 Identities=18% Similarity=0.303 Sum_probs=72.6
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
.++|||+|||+++|+++|+++|++| |.|..++|..|+ ++||||||+|.+.++|++|+..+| +..++|+.|+|.
T Consensus 15 ~~~l~v~nlp~~~t~~~l~~~f~~~---G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~v~ 90 (95)
T 2cqc_A 15 NCCLGVFGLSLYTTERDLREVFSKY---GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN-GMELDGRRIRVS 90 (95)
T ss_dssp GGCEEEESCCSSCCHHHHHHHHHTT---SCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHT-TEEETTEEEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhc---CCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhC-CCEECCEEEEEE
Confidence 3689999999999999999999999 999999999997 689999999999999999999998 799999999999
Q ss_pred cCCC
Q 035741 79 SAKR 82 (890)
Q Consensus 79 ea~~ 82 (890)
.|+.
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 8764
No 43
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.53 E-value=2.9e-14 Score=129.49 Aligned_cols=81 Identities=15% Similarity=0.108 Sum_probs=74.7
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccccC---ceeE
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYGN---SFLK 76 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~g---r~L~ 76 (890)
.++|||+|||+++|+++|+++|++| |.|.+|+|..|+ ++||||||+|.+.++|++|+..+| +..+.| +.|+
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~-g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 15 DRKLFVGMLNKQQSEEDVLRLFQPF---GVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALH-GSQTMPGASSSLV 90 (105)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTT---SCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHS-SCCCCTTCSSCCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHc-CCccCCCCCccEE
Confidence 4689999999999999999999999 999999999998 689999999999999999999998 677777 9999
Q ss_pred EecCCCCCCC
Q 035741 77 ASSAKRRTPH 86 (890)
Q Consensus 77 v~ea~~di~p 86 (890)
|+.|+++--.
T Consensus 91 V~~a~~~~~~ 100 (105)
T 2dnh_A 91 VKFADTDKES 100 (105)
T ss_dssp EEESCSSCCC
T ss_pred EEECccCccc
Confidence 9999887643
No 44
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1.8e-14 Score=130.73 Aligned_cols=80 Identities=14% Similarity=0.101 Sum_probs=74.7
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhh-ccCCceEEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCcc-ccCceeEE
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEE-HTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLS-YGNSFLKA 77 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~-~~~~G~V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~-~~gr~L~v 77 (890)
+.+|||+|||+++|+++|+++|++ | |+|.+|+|+.|+ ++||||||+|.+.++|++|+..+| +.. ++|+.|+|
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~~---G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-g~~~~~g~~l~v 84 (104)
T 2dhg_A 9 EYSLFVGDLTPDVDDGMLYEFFVKVY---PSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQ-GAVGLGSKPVRL 84 (104)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHC---TTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTT-TCCSSSSSCCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhC---CCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHcc-CCcccCCEeEEE
Confidence 468999999999999999999999 9 999999999998 799999999999999999999998 777 99999999
Q ss_pred ecCCCCCC
Q 035741 78 SSAKRRTP 85 (890)
Q Consensus 78 ~ea~~di~ 85 (890)
+.|.++--
T Consensus 85 ~~a~~~~~ 92 (104)
T 2dhg_A 85 SVAIPKAS 92 (104)
T ss_dssp CBCCCCCS
T ss_pred EEccCCCc
Confidence 99977653
No 45
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.53 E-value=1.3e-14 Score=143.14 Aligned_cols=77 Identities=13% Similarity=0.162 Sum_probs=73.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCc--eEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEE
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEG--TVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKA 77 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G--~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v 77 (890)
.+|||||||+++|+++|+++|++| | +|.+|+|+.|+ ++||||||+|.+.++|++|+..+| |..++|+.|+|
T Consensus 56 ~~lfVgnLp~~~te~~L~~~F~~~---G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~ln-g~~~~Gr~l~V 131 (156)
T 3n9u_C 56 AAVYVGSFSWWTTDQQLIQVIRSI---GVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLP-GKVLNGEKVDV 131 (156)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHT---TCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHST-TCEETTEECEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHH---CCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC-CCEECCeEeEE
Confidence 489999999999999999999999 9 99999999998 699999999999999999999998 89999999999
Q ss_pred ecCCCC
Q 035741 78 SSAKRR 83 (890)
Q Consensus 78 ~ea~~d 83 (890)
+.|.+.
T Consensus 132 ~~a~~~ 137 (156)
T 3n9u_C 132 RPATRQ 137 (156)
T ss_dssp EECCHH
T ss_pred EEcCCC
Confidence 998654
No 46
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.3e-14 Score=131.77 Aligned_cols=79 Identities=13% Similarity=0.110 Sum_probs=72.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHh-cCccccCceeEEecC
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLAR-ERLSYGNSFLKASSA 80 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~-~~~~~~gr~L~v~ea 80 (890)
+++|||+|||+.+|+++|+++|++| |+|..|.|..+ ||||||+|++.++|++|+..++ ++..++|+.|+|+.|
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~f---G~v~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 15 SRVLHIRKLPGEVTETEVIALGLPF---GKVTNILMLKG---KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHTTTTT---SCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 5789999999999999999999999 99999998854 8999999999999999999886 578999999999999
Q ss_pred CCCCCC
Q 035741 81 KRRTPH 86 (890)
Q Consensus 81 ~~di~p 86 (890)
+++-+-
T Consensus 89 ~~~~~~ 94 (101)
T 2cq1_A 89 NHKELK 94 (101)
T ss_dssp SCSSCC
T ss_pred CcccCc
Confidence 876643
No 47
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.7e-14 Score=136.84 Aligned_cols=79 Identities=13% Similarity=0.098 Sum_probs=72.6
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHh-cCccccCceeEEecC
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLAR-ERLSYGNSFLKASSA 80 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~-~~~~~~gr~L~v~ea 80 (890)
+++|||||||+++|+++|+++|++| |+|.+|+|+.+ ||||||||++.++|++|++.++ ++..++|+.|+|+.|
T Consensus 31 s~~LfVgNLp~~vte~dL~~lF~~f---G~V~~v~i~~~---kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 31 SRVIHIRKLPIDVTEGEVISLGLPF---GKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHTTT---SCCCEEEEEGG---GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 5789999999999999999999999 99999999965 8999999999999999999887 368999999999999
Q ss_pred CCCCCC
Q 035741 81 KRRTPH 86 (890)
Q Consensus 81 ~~di~p 86 (890)
+++-+-
T Consensus 105 ~~k~~~ 110 (119)
T 2ad9_A 105 NHKELK 110 (119)
T ss_dssp SSSSCC
T ss_pred cCCCCC
Confidence 877643
No 48
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.7e-14 Score=130.32 Aligned_cols=81 Identities=15% Similarity=0.235 Sum_probs=75.3
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
.++|||+|||+++|+++|+++|++| |+|..|+|+.|+ ++||||||+|++.++|++|+..+| +..++|+.|+|.
T Consensus 12 ~~~l~v~nLp~~~t~~~l~~~f~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~v~ 87 (102)
T 1x5s_A 12 EGKLFVGGLSFDTNEQSLEQVFSKY---GQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN-GKSVDGRQIRVD 87 (102)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHHH---SCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHT-TCCTTSCCCEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhc---CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhC-CCEECCeEEEEE
Confidence 4689999999999999999999999 999999999998 699999999999999999999998 789999999999
Q ss_pred cCCCCCCC
Q 035741 79 SAKRRTPH 86 (890)
Q Consensus 79 ea~~di~p 86 (890)
.|+++--.
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x5s_A 88 QAGKSSDN 95 (102)
T ss_dssp EEECCCCC
T ss_pred ECCCCCCC
Confidence 99876633
No 49
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=4.1e-14 Score=130.68 Aligned_cols=81 Identities=16% Similarity=0.165 Sum_probs=73.3
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHh-cCccccCceeEEecC
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLAR-ERLSYGNSFLKASSA 80 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~-~~~~~~gr~L~v~ea 80 (890)
+++|||+|||+++|+++|+++|++| |+|..|.|+. +||||||||++.++|++|+..++ .++.++|+.|+|+.|
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~f---G~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLVEALEKF---GTICYVMMMP---FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CSEEEEESCCSSCCHHHHHHHHTTT---SCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC---CCEEEEEEEC---CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 5789999999999999999999999 9999999984 58999999999999999999887 356899999999999
Q ss_pred CCCCCCCCC
Q 035741 81 KRRTPHFAK 89 (890)
Q Consensus 81 ~~di~p~rp 89 (890)
+++-.- +|
T Consensus 89 ~~~~~~-~~ 96 (104)
T 1wex_A 89 TSKRIT-RP 96 (104)
T ss_dssp SSSSCC-CS
T ss_pred cCcccc-CC
Confidence 887755 54
No 50
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.52 E-value=6.8e-15 Score=141.16 Aligned_cols=75 Identities=12% Similarity=0.061 Sum_probs=65.7
Q ss_pred CCceEEEeCC----CCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecC-----HHH---HHHHHH--H
Q 035741 1 MAKMIMLYGF----ASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTT-----VEA---ADFIKC--L 63 (890)
Q Consensus 1 M~kti~Vgnl----p~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~-----~~~---a~~a~~--~ 63 (890)
|.++|||||| |+++++++|+++|++| |+|.++++++|+ +|||||||+|.+ .++ |..|+. .
T Consensus 1 mp~kI~VgnL~~~~~~~tte~~Lk~~Fs~f---GeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~ 77 (136)
T 2j8a_A 1 MSCEIVVYPAQDSTTTNIQDISIKNYFKKY---GEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHE 77 (136)
T ss_dssp -CCEEEEEESSSSCCCCCCHHHHHHHHHTT---SCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTT
T ss_pred CCcEEEEeCCCCCCCCCCCHHHHHHHHHhc---CCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 8999999999 9999999999999999 999999999999 799999999995 343 566665 3
Q ss_pred HhcCccccCceeEEec
Q 035741 64 ARERLSYGNSFLKASS 79 (890)
Q Consensus 64 ~~~~~~~~gr~L~v~e 79 (890)
+| |..++||.|+|+-
T Consensus 78 ln-g~~I~Gr~irV~l 92 (136)
T 2j8a_A 78 SS-GCFIMGFKFEVIL 92 (136)
T ss_dssp TT-CEEETTEEEEEEE
T ss_pred hc-CCeecCcEEEEEE
Confidence 44 8999999999995
No 51
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.52 E-value=3.8e-14 Score=130.97 Aligned_cols=81 Identities=15% Similarity=0.159 Sum_probs=75.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
..+|||+|||+.+|+++|+++|++| |.|.+|+|+.++ ++||||||+|.+.++|++|+..+| +..++|+.|+|.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~V~ 90 (115)
T 2dgo_A 15 HFHVFVGDLSPEITTEDIKAAFAPF---GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG-GQWLGGRQIRTN 90 (115)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT-TCEETTEECEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhC-CCEECCEEEEEE
Confidence 4689999999999999999999999 999999999997 699999999999999999999998 799999999999
Q ss_pred cCCCCCCC
Q 035741 79 SAKRRTPH 86 (890)
Q Consensus 79 ea~~di~p 86 (890)
.|+++-.+
T Consensus 91 ~a~~~~~~ 98 (115)
T 2dgo_A 91 WATRKPPA 98 (115)
T ss_dssp ESSCCCCC
T ss_pred EccCCCCC
Confidence 99887743
No 52
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.2e-14 Score=129.73 Aligned_cols=79 Identities=14% Similarity=0.163 Sum_probs=74.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEE-EeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEE
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGV-EVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKA 77 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~-~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v 77 (890)
+.+|||+|||+++|+++|+++|++| |.|.++ +|..|+ ++||||||+|++.++|++|+..+| +..++|+.|+|
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~v 80 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSAF---GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMN-GQYLCNRPITV 80 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTT---SCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTT-TCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcC-CCEECCEEEEE
Confidence 4689999999999999999999999 999999 999996 699999999999999999999888 79999999999
Q ss_pred ecCCCCC
Q 035741 78 SSAKRRT 84 (890)
Q Consensus 78 ~ea~~di 84 (890)
..|+++-
T Consensus 81 ~~a~~~~ 87 (96)
T 1x5t_A 81 SYAFKKD 87 (96)
T ss_dssp EESCCCC
T ss_pred EEecccC
Confidence 9998765
No 53
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1.6e-14 Score=133.60 Aligned_cols=79 Identities=19% Similarity=0.258 Sum_probs=74.1
Q ss_pred CceEEEeCCCCCCCHHHHH---HHHhhccCCceEEEEEeeecC------CCCceEEEEecCHHHHHHHHHHHhcCccccC
Q 035741 2 AKMIMLYGFASLASPKAVK---EFLEEHTGEGTVSGVEVGQNK------GSRAHAIVEFTTVEAADFIKCLARERLSYGN 72 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~---~~f~~~~~~G~V~s~~i~~dr------~sRgfgfVem~~~~~a~~a~~~~~~~~~~~g 72 (890)
..+|||+|||+++|+++|+ ++|++| |+|..|+|..|+ ++||||||+|++.++|++|+..+| |..++|
T Consensus 15 ~~~l~V~nLp~~~~~~~l~~~~~~F~~~---G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~ln-g~~~~g 90 (111)
T 2cpi_A 15 KNLVFVVGLSQRLADPEVLKRPEYFGKF---GKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVN-NVVVDG 90 (111)
T ss_dssp SSCEEEEEECTTTCCHHHHHSTTTTTTT---SCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHT-TEEETT
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhhcc---CCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhC-CCEECC
Confidence 4689999999999999999 999999 999999999887 477999999999999999999998 799999
Q ss_pred ceeEEecCCCCC
Q 035741 73 SFLKASSAKRRT 84 (890)
Q Consensus 73 r~L~v~ea~~di 84 (890)
+.|+|+.|.++-
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998765
No 54
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.52 E-value=2.8e-14 Score=127.13 Aligned_cols=77 Identities=10% Similarity=0.227 Sum_probs=72.6
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
.++|||+|||+++|+++|+++|++| |.|.+|+|..|+ ++||||||+|.+.++|++|+..+| +..++|+.|+|+.
T Consensus 16 ~~~l~v~nlp~~~~~~~l~~~F~~~---G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 16 DRTVFVGNLEARVREEILYELFLQA---GPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN-GIRLYGRPINVSG 91 (95)
T ss_dssp GGEEEEECCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHT-TCEETTEECEEEC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhc---CCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhC-CCEECCCEEEEEE
Confidence 4689999999999999999999999 999999999998 799999999999999999999888 7999999999998
Q ss_pred CCC
Q 035741 80 AKR 82 (890)
Q Consensus 80 a~~ 82 (890)
|+.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 753
No 55
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=2.9e-14 Score=126.82 Aligned_cols=76 Identities=16% Similarity=0.140 Sum_probs=71.7
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
.++|||+|||+++|+++|+++|++| |.|..++|..++ ++||||||+|.+.++|++|+..+| +..++|+.|+|+
T Consensus 16 ~~~l~V~nlp~~~t~~~l~~~f~~~---G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~v~ 91 (94)
T 2e5h_A 16 KSTVYVSNLPFSLTNNDLYRIFSKY---GKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAIN-NKQLFGRVIKAS 91 (94)
T ss_dssp TTSEEEESCCTTSCHHHHHHHTTTT---SCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTT-TEEETTEEEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhc---CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcC-CCeeCCcEEEEE
Confidence 4689999999999999999999999 999999999997 699999999999999999999988 799999999998
Q ss_pred cCC
Q 035741 79 SAK 81 (890)
Q Consensus 79 ea~ 81 (890)
-|+
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 774
No 56
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.52 E-value=2.3e-14 Score=132.27 Aligned_cols=78 Identities=10% Similarity=0.159 Sum_probs=73.4
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
+.+|||+|||+++|+++|+++|++| |.|.+++|+.++ ++||||||+|.+.++|++|+..+| |..++|+.|+|+
T Consensus 26 ~~~l~V~nLp~~~te~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~-g~~i~g~~l~V~ 101 (108)
T 2jrs_A 26 PMRLYVGSLHFNITEDMLRGIFEPF---GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLN-GFELAGRPMKVG 101 (108)
T ss_dssp CEEEEEECCCSSCCHHHHHHHHTTT---SCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHT-TCCSSSSCCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcC-CCEECCEEEEEE
Confidence 3689999999999999999999999 999999999997 589999999999999999999888 799999999999
Q ss_pred cCCCC
Q 035741 79 SAKRR 83 (890)
Q Consensus 79 ea~~d 83 (890)
.|+++
T Consensus 102 ~a~~k 106 (108)
T 2jrs_A 102 HVTER 106 (108)
T ss_dssp CSCSS
T ss_pred EcccC
Confidence 98764
No 57
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.52 E-value=2.6e-14 Score=132.06 Aligned_cols=79 Identities=11% Similarity=0.201 Sum_probs=74.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecC
Q 035741 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSA 80 (890)
Q Consensus 1 M~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea 80 (890)
++++|||+|||+++|+++|+++|++| |.|.+|.|..++++||||||+|.+.++|++|+..+| |..++|+.|+|..|
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~---G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKY---GPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLS-GFNVSNRYLVVLYY 82 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTT---SCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHT-TCBSSSCBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcC-CCEECCeEEEEEEe
Confidence 36799999999999999999999999 999999999998899999999999999999999888 89999999999998
Q ss_pred CCC
Q 035741 81 KRR 83 (890)
Q Consensus 81 ~~d 83 (890)
.++
T Consensus 83 ~~~ 85 (115)
T 3lqv_A 83 NAN 85 (115)
T ss_dssp CHH
T ss_pred cCC
Confidence 754
No 58
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.52 E-value=1.6e-14 Score=135.09 Aligned_cols=76 Identities=12% Similarity=0.085 Sum_probs=70.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCc-eEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCC
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEG-TVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAK 81 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G-~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~ 81 (890)
.+|||||||+++|+++|+++|++| | +|..++|..+ ++||||||+|++.++|++|++.+| |..++||.|+|..|.
T Consensus 29 ~~l~VgnLp~~~te~dL~~~F~~~---G~~v~~v~i~~~-~~rGfaFV~F~~~e~A~~Ai~~ln-g~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 29 YRITMKNLPEGCSWQDLKDLAREN---SLETTFSSVNTR-DFDGTGALEFPSEEILVEALERLN-NIEFRGSVITVERDD 103 (111)
T ss_dssp EEEEEECSSCCCCHHHHHHHHHHH---TCCCSEEECSSC-SSSCCEEEEESSHHHHHHHHHHTT-TEEETTEEEEEEESC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHh---CCeeEEEEEEcC-CCCCEEEEEECCHHHHHHHHHHcC-CCEECCeEEEEEECC
Confidence 579999999999999999999999 9 9999999754 699999999999999999999998 899999999999986
Q ss_pred CC
Q 035741 82 RR 83 (890)
Q Consensus 82 ~d 83 (890)
..
T Consensus 104 ~~ 105 (111)
T 2jvr_A 104 NP 105 (111)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 59
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.52 E-value=1.3e-14 Score=124.05 Aligned_cols=72 Identities=18% Similarity=0.271 Sum_probs=67.9
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecC
Q 035741 4 MIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSA 80 (890)
Q Consensus 4 ti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea 80 (890)
+|||+|||+++|+++|+++|++| |+|.+++|..++ ++||||||+|.+.++|++|++ +| +..++|+.|+|+.|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~-~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQF---GKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IH-FHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTT---SCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SS-CCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhc---CCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CC-CCEECCEEEEEEeC
Confidence 69999999999999999999999 999999999997 699999999999999999998 55 89999999999875
No 60
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.52 E-value=3.1e-14 Score=130.58 Aligned_cols=79 Identities=13% Similarity=0.123 Sum_probs=74.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
+++|||||||+++|+++|+++|++| |.|.+|+|+.|+ ++||||||+|.+.++|++|+..+| |..++|+.|+|.
T Consensus 26 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~-g~~~~g~~l~V~ 101 (110)
T 1oo0_B 26 GWILFVTSIHEEAQEDEIQEKFCDY---GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALN-GAEIMGQTIQVD 101 (110)
T ss_dssp BEEEEEESCCTTCCHHHHHHHHGGG---SCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHT-TCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcC-CCEECCcEEEEE
Confidence 4679999999999999999999999 999999999997 689999999999999999999888 799999999999
Q ss_pred cCCCCC
Q 035741 79 SAKRRT 84 (890)
Q Consensus 79 ea~~di 84 (890)
.|+++-
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 987654
No 61
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.51 E-value=1.4e-14 Score=126.12 Aligned_cols=73 Identities=7% Similarity=0.121 Sum_probs=67.2
Q ss_pred CceEEEeCCCCCC------CHHHHHHHHhhccCCceEEEEEeeecC-CCCceEEEEecCHHHHHHHHHHHhcCccccCc-
Q 035741 2 AKMIMLYGFASLA------SPKAVKEFLEEHTGEGTVSGVEVGQNK-GSRAHAIVEFTTVEAADFIKCLARERLSYGNS- 73 (890)
Q Consensus 2 ~kti~Vgnlp~~~------t~~~l~~~f~~~~~~G~V~s~~i~~dr-~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr- 73 (890)
+.+|||||||+++ |+++|+++|++| |.|.+++|..+. ++||||||+|++.++|++|+..+| |..++|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~---G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~ln-g~~~~g~~ 76 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF---GKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNAD-GYKLDKQH 76 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTT---CCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSS-SCCCSSSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhc---CCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhc-CcccCCce
Confidence 4789999999999 779999999999 999999998433 799999999999999999999988 8999999
Q ss_pred eeEEe
Q 035741 74 FLKAS 78 (890)
Q Consensus 74 ~L~v~ 78 (890)
.|+||
T Consensus 77 ~l~V~ 81 (81)
T 2krb_A 77 TFRVN 81 (81)
T ss_dssp CCCCC
T ss_pred eEEeC
Confidence 99986
No 62
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=1.3e-14 Score=136.20 Aligned_cols=77 Identities=18% Similarity=0.182 Sum_probs=71.1
Q ss_pred CceEEEeCCCCC-CCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHh-cCccccCceeEEec
Q 035741 2 AKMIMLYGFASL-ASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLAR-ERLSYGNSFLKASS 79 (890)
Q Consensus 2 ~kti~Vgnlp~~-~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~-~~~~~~gr~L~v~e 79 (890)
+++|||+|||++ +|+++|+++|++| |+|.+|.|+ ++||||||||++.++|++|+..+| ++..+.||.|+|+.
T Consensus 25 ~~~l~V~NLp~~~~te~~L~~lF~~f---G~V~~v~i~---~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 25 GRVIHLSNLPHSGYSDSAVLKLAEPY---GKIKNYILM---RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp CCEEEEESCCCSSCCSHHHHTTTTTT---SCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCEEEEeCCCCccCCHHHHHHHHHhc---CCEEEEEEe---cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 578999999998 9999999999999 999999998 689999999999999999999887 46789999999999
Q ss_pred CCCCC
Q 035741 80 AKRRT 84 (890)
Q Consensus 80 a~~di 84 (890)
|+..-
T Consensus 99 a~~~~ 103 (112)
T 1x4f_A 99 SEKYK 103 (112)
T ss_dssp ECSCS
T ss_pred Ccccc
Confidence 97544
No 63
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=4.8e-14 Score=129.13 Aligned_cols=80 Identities=26% Similarity=0.268 Sum_probs=74.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHh-c----CccccCc
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLAR-E----RLSYGNS 73 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~-~----~~~~~gr 73 (890)
.++|||+|||+++|+++|+++|++| |+|.+|+|+.|+ ++||||||+|.+.++|++|+..+| + +..++|+
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 15 GKTVFIRNLSFDSEEEALGEVLQQF---GDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTT---SCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhc---CCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 4689999999999999999999999 999999999998 699999999999999999999986 1 6899999
Q ss_pred eeEEecCCCCC
Q 035741 74 FLKASSAKRRT 84 (890)
Q Consensus 74 ~L~v~ea~~di 84 (890)
.|+|..|.++-
T Consensus 92 ~l~v~~a~~~~ 102 (111)
T 1x4h_A 92 QLKVDLAVTRD 102 (111)
T ss_dssp EEEEECCCCCC
T ss_pred EEEEEECCCCc
Confidence 99999997765
No 64
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=4.4e-14 Score=128.08 Aligned_cols=81 Identities=14% Similarity=0.125 Sum_probs=75.7
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC-CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecC
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK-GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSA 80 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr-~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea 80 (890)
+.+|||+|||+++|+++|+++|++| |+|.+|+|..+. ++||||||+|.+.++|++|+..+| +..++|+.|+|..|
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 15 VVNLYVKNLDDGIDDERLRKAFSPF---GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN-GRIVATKPLYVALA 90 (103)
T ss_dssp CCCEEEECCCTTCCHHHHHHTTTTT---SCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHT-TCBSSSSBCEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhC-CCEeCCcEEEEEEe
Confidence 4689999999999999999999999 999999999986 799999999999999999999998 79999999999999
Q ss_pred CCCCCC
Q 035741 81 KRRTPH 86 (890)
Q Consensus 81 ~~di~p 86 (890)
+++--+
T Consensus 91 ~~~~~~ 96 (103)
T 2d9p_A 91 QRKEER 96 (103)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 887643
No 65
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.51 E-value=2.7e-14 Score=133.43 Aligned_cols=80 Identities=20% Similarity=0.233 Sum_probs=75.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
.++|||+|||+++|+++|+++|++| |+|.+|+|..|+ ++||||||+|++.++|++|+..+| |..++|+.|+|..
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~-g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 7 PGKLFIGGLNRETNEKMLKAVFGKH---GPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN-GKSLHGKAIKVEQ 82 (116)
T ss_dssp CCEEEEECCTTTCCHHHHHHHHHTS---SCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCS-SCBCSSSBCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhC-CCEECCEEEEEEE
Confidence 4789999999999999999999999 999999999998 799999999999999999999988 7999999999999
Q ss_pred CCCCCC
Q 035741 80 AKRRTP 85 (890)
Q Consensus 80 a~~di~ 85 (890)
|++.-.
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 976653
No 66
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.51 E-value=3e-14 Score=129.60 Aligned_cols=79 Identities=15% Similarity=0.163 Sum_probs=73.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccc---cCcee
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSY---GNSFL 75 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~---~gr~L 75 (890)
..+|||+|||+++|+++|+++|++| |+|.+|+|+.|+ ++||||||+|.+.++|++|+..+| +..+ +|+.|
T Consensus 13 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~-g~~~~~~~g~~l 88 (106)
T 2dgp_A 13 AIKLFIGQIPRNLDEKDLKPLFEEF---GKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALH-EQKTLPGMNRPI 88 (106)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHHH---SCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHT-TTCCCTTCSSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhc-CCcccCCCCceE
Confidence 3689999999999999999999999 999999999998 699999999999999999999998 6666 89999
Q ss_pred EEecCCCCC
Q 035741 76 KASSAKRRT 84 (890)
Q Consensus 76 ~v~ea~~di 84 (890)
+|+.|+++-
T Consensus 89 ~v~~a~~~~ 97 (106)
T 2dgp_A 89 QVKPADSES 97 (106)
T ss_dssp EEEECCCCS
T ss_pred EEEECCccc
Confidence 999997765
No 67
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.6e-14 Score=130.62 Aligned_cols=79 Identities=16% Similarity=0.218 Sum_probs=72.6
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEE-EEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSG-VEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s-~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
..+|||+|||+++|+++|++||++| |.|.. |.|..|+ ++||||||+|++.++|++|+.. | +..++||.|+|.
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~---G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~-~~~~~gr~i~v~ 89 (104)
T 1wg5_A 15 DGFVRLRGLPFGCSKEEIVQFFSGL---EIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-H-KERIGHRYIEIF 89 (104)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTTTC---CEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-T-TCCSSSSCCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-C-cchhCCcEEEEE
Confidence 4689999999999999999999999 99987 9999887 7999999999999999999998 6 899999999999
Q ss_pred cCCCCCC
Q 035741 79 SAKRRTP 85 (890)
Q Consensus 79 ea~~di~ 85 (890)
.+.++-+
T Consensus 90 ~~~~~~~ 96 (104)
T 1wg5_A 90 KSSRAEV 96 (104)
T ss_dssp EECTTTS
T ss_pred ECCHHHH
Confidence 9876554
No 68
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.51 E-value=2.7e-14 Score=130.74 Aligned_cols=78 Identities=6% Similarity=0.105 Sum_probs=71.4
Q ss_pred CCceEEEeCCCCCC------CHHHHHHHHhhccCCceEEEEEeeecC-CCCceEEEEecCHHHHHHHHHHHhcCccccCc
Q 035741 1 MAKMIMLYGFASLA------SPKAVKEFLEEHTGEGTVSGVEVGQNK-GSRAHAIVEFTTVEAADFIKCLARERLSYGNS 73 (890)
Q Consensus 1 M~kti~Vgnlp~~~------t~~~l~~~f~~~~~~G~V~s~~i~~dr-~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr 73 (890)
|+.+|||||||+++ |+++|+++|++| |+|.+|+|..+. +|||||||+|.+.++|++|+..+| |..++|+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~---G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~-g~~~~g~ 89 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF---GKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNAD-GYKLDKQ 89 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGG---SCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCS-SEECSTT
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcC---CCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhC-CcccCCC
Confidence 46789999999999 789999999999 999999998433 799999999999999999999998 7999998
Q ss_pred -eeEEecCCC
Q 035741 74 -FLKASSAKR 82 (890)
Q Consensus 74 -~L~v~ea~~ 82 (890)
.|+|+.|.+
T Consensus 90 ~~l~V~~a~~ 99 (105)
T 2nlw_A 90 HTFRVNLFTD 99 (105)
T ss_dssp CEEEEECSCC
T ss_pred ceEEEEEcch
Confidence 999998864
No 69
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.7e-14 Score=130.61 Aligned_cols=79 Identities=13% Similarity=0.169 Sum_probs=74.3
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
.+||||+|||+++|+++|+++|++| |.|.+++|..++ ++||||||+|.+.++|++|+..+| |..++|+.|+|.
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~---G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~v~ 83 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEV---GPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLN-GREFSGRALRVD 83 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTT---SCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSS-SBSCSSSCBEEE
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhc---CCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhC-CCeeCCcEEEEE
Confidence 3689999999999999999999999 999999999997 589999999999999999999888 799999999999
Q ss_pred cCCCCC
Q 035741 79 SAKRRT 84 (890)
Q Consensus 79 ea~~di 84 (890)
.|.++-
T Consensus 84 ~a~~~~ 89 (104)
T 1p1t_A 84 NAASEK 89 (104)
T ss_dssp ETTCTT
T ss_pred eCCCcc
Confidence 988765
No 70
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.50 E-value=7.1e-15 Score=129.93 Aligned_cols=79 Identities=14% Similarity=0.196 Sum_probs=70.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
++|||||||+++|+++|+++|++| |+|.+++|..|+ ++||||||+|.+.+ |++|+..+| |..++|+.|+|+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~-g~~~~g~~l~V~~ 76 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQF---GKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLD-NTDFMGRTIRVTE 76 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHH---TCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSC-SSCCSSSSCSEEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhc---CCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhC-CCEECCeEEEEEE
Confidence 689999999999999999999999 999999999998 69999999999999 999999888 7999999999999
Q ss_pred CCCCCCC
Q 035741 80 AKRRTPH 86 (890)
Q Consensus 80 a~~di~p 86 (890)
|.+.-.+
T Consensus 77 a~~~~~~ 83 (90)
T 2ki2_A 77 ANPKKSL 83 (90)
T ss_dssp C------
T ss_pred cCCCCCC
Confidence 9887755
No 71
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3.9e-14 Score=129.52 Aligned_cols=82 Identities=15% Similarity=0.113 Sum_probs=75.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCce-EEEEEee-ecC---CCCceEEEEecCHHHHHHHHHHHhcC-ccccCcee
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGT-VSGVEVG-QNK---GSRAHAIVEFTTVEAADFIKCLARER-LSYGNSFL 75 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~-V~s~~i~-~dr---~sRgfgfVem~~~~~a~~a~~~~~~~-~~~~gr~L 75 (890)
..||||||||+++|+++|+++|++| |. |.++.|+ .|+ ++||||||+|.+.++|++|+..+++| ..++|+.|
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~---G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 8 NCRLFIGGIPKMKKREEILEEIAKV---TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHH---STTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHh---cCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 3579999999999999999999999 98 9999999 777 69999999999999999999998534 89999999
Q ss_pred EEecCCCCCCC
Q 035741 76 KASSAKRRTPH 86 (890)
Q Consensus 76 ~v~ea~~di~p 86 (890)
+|+.|+++--|
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999887755
No 72
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.50 E-value=3.2e-14 Score=124.90 Aligned_cols=74 Identities=15% Similarity=0.255 Sum_probs=68.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
.++|||+|||+++|+++|+++|++| |+|.+++|+.|+ ++||||||+|.+.++|++|+++ + +..++|+.|+|+
T Consensus 11 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~-~~~~~g~~i~v~ 85 (87)
T 3s7r_A 11 AGKMFVGGLSWDTSKKDLKDYFTKF---GEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-K-EHRLDGRVIDPK 85 (87)
T ss_dssp TTEEEEECCCTTCCHHHHHHHHTTT---SCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-S-CEEETTEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC---CCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-C-CCEECCEEEEEE
Confidence 4689999999999999999999999 999999999997 6999999999999999999976 4 678999999998
Q ss_pred cC
Q 035741 79 SA 80 (890)
Q Consensus 79 ea 80 (890)
.|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 73
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=7.2e-14 Score=128.73 Aligned_cols=79 Identities=15% Similarity=0.108 Sum_probs=74.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
+.||||+|||+++|+++|+++|++| |+|..|+|..|+ ++||||||+|.+.++|++|+..+| +..++|+.|+|..
T Consensus 15 ~~~l~V~nlp~~~~~~~l~~~f~~~---G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~v~~ 90 (114)
T 2do0_A 15 GSTVFVANLDYKVGWKKLKEVFSMA---GVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN-GQLLFDRPMHVKM 90 (114)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTT---SCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHT-TCEETTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhC-CCEeCCCEEEEEE
Confidence 5789999999999999999999999 999999999998 689999999999999999999888 7999999999998
Q ss_pred CCCCC
Q 035741 80 AKRRT 84 (890)
Q Consensus 80 a~~di 84 (890)
|++..
T Consensus 91 a~~~~ 95 (114)
T 2do0_A 91 DERAL 95 (114)
T ss_dssp CSCCC
T ss_pred cccCC
Confidence 86544
No 74
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.7e-14 Score=126.22 Aligned_cols=75 Identities=12% Similarity=0.157 Sum_probs=70.7
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
+++|||+|||+++|+++|+++|++| |+|.+++|..|+ ++||||||+|.+.++|++|+..+| |..++|+.|+++
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~---G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~~~~~ 80 (85)
T 1x4e_A 5 SSGLYIRGLQPGTTDQDLVKLCQPY---GKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALK-ASGVQAQMAKQS 80 (85)
T ss_dssp CCEEEEESCCTTCCHHHHHTTSTTT---SCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHH-HHTCCEESCCSS
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhc-CCeEeeEEEeec
Confidence 4789999999999999999999999 999999999997 699999999999999999999998 799999999987
Q ss_pred cC
Q 035741 79 SA 80 (890)
Q Consensus 79 ea 80 (890)
.+
T Consensus 81 ~~ 82 (85)
T 1x4e_A 81 GP 82 (85)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 75
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.1e-14 Score=133.27 Aligned_cols=79 Identities=14% Similarity=0.153 Sum_probs=71.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 1 M~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
+..+|||+|||+++|++||+++|+++ |.| +|+|+.|+ ++||||||+|++.++|++|+++ | +..++||.|+|.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~---G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~-~~~~~gr~i~V~ 87 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPL---NPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMAK-D-KANMQHRYVELF 87 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSC---CCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHTT-S-SCCSSSSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHc---Cce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-C-CCeECCcEEEEE
Confidence 35789999999999999999999999 966 99999998 7999999999999999999964 5 899999999999
Q ss_pred cCCCCCC
Q 035741 79 SAKRRTP 85 (890)
Q Consensus 79 ea~~di~ 85 (890)
.+.+..-
T Consensus 88 ~~~~~~~ 94 (102)
T 1wez_A 88 LNSTAGT 94 (102)
T ss_dssp EECCCCC
T ss_pred ECCCCCC
Confidence 8876653
No 76
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=2.9e-14 Score=129.70 Aligned_cols=78 Identities=13% Similarity=0.237 Sum_probs=73.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
.++|||+|||+++|+++|+++|++| |+|..|+|+.|+ ++||||||+|++.++|++|+.. | +..++|+.|+|.
T Consensus 16 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~-~~~~~g~~l~V~ 90 (105)
T 2dh8_A 16 IGKLFVGGLDWSTTQETLRSYFSQY---GEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-R-PHTLDGRNIDPK 90 (105)
T ss_dssp SSEECCBSCCTTCCHHHHHHHHHTT---SCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-C-SEEETTEEEBCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-C-CCeECCEEEEEE
Confidence 4689999999999999999999999 999999999997 6999999999999999999999 6 899999999999
Q ss_pred cCCCCC
Q 035741 79 SAKRRT 84 (890)
Q Consensus 79 ea~~di 84 (890)
.|.++-
T Consensus 91 ~a~~~~ 96 (105)
T 2dh8_A 91 PCTPRG 96 (105)
T ss_dssp CSCCSS
T ss_pred EccCCC
Confidence 998776
No 77
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3.2e-14 Score=131.06 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=74.3
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEE--------EEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccc
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVS--------GVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSY 70 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~--------s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~ 70 (890)
..+|||+|||+++|+++|+++|++| |.|. .|+|..|+ ++||||||+|.+.++|++|+..+| +..+
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~-g~~~ 90 (113)
T 2cpe_A 15 NSAIYVQGLNDSVTLDDLADFFKQC---GVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFD-GKDF 90 (113)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHTTT---SCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHT-TCEE
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhc---CCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcC-CCcc
Confidence 4689999999999999999999999 9999 59999997 699999999999999999999998 7999
Q ss_pred cCceeEEecCCCCC
Q 035741 71 GNSFLKASSAKRRT 84 (890)
Q Consensus 71 ~gr~L~v~ea~~di 84 (890)
+|+.|+|..|+++-
T Consensus 91 ~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 91 QGSKLKVSLARKKP 104 (113)
T ss_dssp TTEECEEECSSCCC
T ss_pred CCCEEEEEECCCCC
Confidence 99999999998765
No 78
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=3.7e-14 Score=127.56 Aligned_cols=77 Identities=21% Similarity=0.289 Sum_probs=70.8
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecC
Q 035741 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSA 80 (890)
Q Consensus 1 M~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea 80 (890)
++.+|||||||+++|+++|+++|++| |.|. ++++++ ++||||||+|.+.++|++|+..+| |..++|+.|+|..|
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~---G~v~-~~~~~~-~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALREL---GSVP-LRLTWQ-GPRRRAFLHYPDSAAAQQAVSCLQ-GLRLGTDTLRVALA 91 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHT---TCCC-SEEEEE-TTTTEEEEECSSHHHHHHHHHHHT-TCCSSSSCCEEEEC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhc---CCEE-EEEEcC-CCCcEEEEEECCHHHHHHHHHHhC-CCEECCcEEEEEEc
Confidence 36789999999999999999999999 9997 777765 689999999999999999999998 79999999999998
Q ss_pred CCC
Q 035741 81 KRR 83 (890)
Q Consensus 81 ~~d 83 (890)
+++
T Consensus 92 ~~~ 94 (97)
T 2e5j_A 92 RQQ 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 79
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.49 E-value=2.4e-14 Score=129.78 Aligned_cols=76 Identities=16% Similarity=0.199 Sum_probs=70.3
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC----CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEE
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK----GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKA 77 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr----~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v 77 (890)
.+||||||||+++|+++|+++|++| | |.+|+|+.++ ++||||||+|.+.++|++|+ .+| |..++|+.|+|
T Consensus 19 ~~~l~V~nLp~~~t~~~l~~~F~~~---G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~-g~~~~g~~l~V 92 (100)
T 2j76_E 19 PYTAFLGNLPYDVTEESIKEFFRGL---N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLN-EESLGNRRIRV 92 (100)
T ss_dssp -CEEEESCCSSCCSSSHHHHHSCSS---C-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTT-TCCBTTBCCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhc---C-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcC-CCEECCeEEEE
Confidence 5789999999999999999999999 9 9999999986 58999999999999999999 676 89999999999
Q ss_pred ecCCCC
Q 035741 78 SSAKRR 83 (890)
Q Consensus 78 ~ea~~d 83 (890)
..|+++
T Consensus 93 ~~a~~~ 98 (100)
T 2j76_E 93 DVADQA 98 (100)
T ss_dssp EECCCS
T ss_pred EeccCC
Confidence 998764
No 80
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.49 E-value=6.3e-14 Score=131.55 Aligned_cols=81 Identities=12% Similarity=0.155 Sum_probs=75.6
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
+.+|||+|||+++|+++|+++|++| |+|.+|+|+.|+ ++||||||+|.+.++|++|+..+| +..++|+.|+|.
T Consensus 22 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~v~ 97 (126)
T 3ex7_B 22 GWILFVTGVHEEATEEDIHDKFAEY---GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLN-GQDLMGQPISVD 97 (126)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTT---SCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHT-TCBSSSSBCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC-CCeeCCeEEEEE
Confidence 3589999999999999999999999 999999999997 689999999999999999999888 799999999999
Q ss_pred cCCCCCCC
Q 035741 79 SAKRRTPH 86 (890)
Q Consensus 79 ea~~di~p 86 (890)
.|.++-.+
T Consensus 98 ~a~~~~~~ 105 (126)
T 3ex7_B 98 WCFVRGPP 105 (126)
T ss_dssp ESEESSSC
T ss_pred EecCCCCC
Confidence 99877644
No 81
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.49 E-value=4.4e-14 Score=127.60 Aligned_cols=75 Identities=11% Similarity=0.173 Sum_probs=70.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCC
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAK 81 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~ 81 (890)
++||||||||+++|+++|+++|++| |+|.+++|. ++||||||+|.+.++|++|+..+| |..++|+.|+|+.|+
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~---G~i~~~~~~---~~~g~afV~f~~~~~A~~Ai~~l~-g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNF---GFILDFKHY---PEKGCCFIKYDTHEQAAVCIVALA-NFPFQGRNLRTGWGK 99 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTT---SCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHT-TCEETTEECCCCBCC
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhC---CCEEEEEEe---cCCCEEEEEECCHHHHHHHHHHhC-CCeECCeEEEEEecc
Confidence 4689999999999999999999999 999999998 789999999999999999999998 899999999999987
Q ss_pred CC
Q 035741 82 RR 83 (890)
Q Consensus 82 ~d 83 (890)
++
T Consensus 100 ~~ 101 (101)
T 2la4_A 100 ER 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 82
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.49 E-value=1e-14 Score=133.97 Aligned_cols=77 Identities=14% Similarity=0.237 Sum_probs=71.4
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCce---EEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccccCceeE
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGT---VSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLK 76 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~---V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~ 76 (890)
..+|||||||+++|+++|++||+++ |. |.+|+|+.|+ ++||||||+|++.++|++|+. +| +..++||.|+
T Consensus 11 ~~~l~V~nLp~~~te~~l~~~F~~~---g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~-~~~~~gr~i~ 85 (107)
T 2lmi_A 11 VFLIRAQGLPWSCTMEDVLNFFSDC---RIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KH-RMYMGQRYVE 85 (107)
T ss_dssp CCEEEEECCCSSCCSHHHHHHTTTS---CBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TT-TCCSSSSCCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhc---CCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hC-cceeCCeEEE
Confidence 4689999999999999999999999 77 9999999999 799999999999999999999 66 7999999999
Q ss_pred EecCCCC
Q 035741 77 ASSAKRR 83 (890)
Q Consensus 77 v~ea~~d 83 (890)
|..|.++
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9988654
No 83
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.49 E-value=1e-14 Score=136.73 Aligned_cols=77 Identities=21% Similarity=0.312 Sum_probs=71.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCce---EEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccccCceeE
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGT---VSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLK 76 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~---V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~ 76 (890)
..+|||+|||+++|+++|++||++| |. |.+|+|+.|+ ++||||||+|++.++|++|+. +| +..++||.|+
T Consensus 17 ~~~l~V~nLp~~~te~~l~~~F~~~---G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~-g~~~~gr~i~ 91 (118)
T 2db1_A 17 GYVVKLRGLPWSCSIEDVQNFLSDC---TIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KD-RESMGHRYIE 91 (118)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTTTS---CBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GT-TEEETTEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHc---CCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cC-CCeECCeEEE
Confidence 4689999999999999999999999 88 8999999998 799999999999999999999 66 8999999999
Q ss_pred EecCCCC
Q 035741 77 ASSAKRR 83 (890)
Q Consensus 77 v~ea~~d 83 (890)
|..|.++
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9987554
No 84
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.49 E-value=7.2e-14 Score=135.91 Aligned_cols=79 Identities=18% Similarity=0.213 Sum_probs=75.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
..+|||||||+++|+++|+++|++| |+|.+|+|..|+ ++||||||+|.+.++|++|+..+| |..++|+.|+|.
T Consensus 70 ~~~l~v~nl~~~~~~~~l~~~F~~~---G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~v~ 145 (158)
T 2kn4_A 70 MTSLKVDNLTYRTSPDTLRRVFEKY---GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMD-GAVLDGRELRVQ 145 (158)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHH---SCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHST-TEESSSSEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhC-CCEECCeEEEEE
Confidence 3689999999999999999999999 999999999997 699999999999999999999988 799999999999
Q ss_pred cCCCCC
Q 035741 79 SAKRRT 84 (890)
Q Consensus 79 ea~~di 84 (890)
.|++.-
T Consensus 146 ~a~~~~ 151 (158)
T 2kn4_A 146 MARYGR 151 (158)
T ss_dssp EECCSS
T ss_pred ECCCCC
Confidence 998876
No 85
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2.4e-14 Score=132.30 Aligned_cols=77 Identities=16% Similarity=0.253 Sum_probs=71.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
.+||||+|||+++|+++|+++|++| |+|..|+|+.|+ ++||||||+|.+.++|++|+ .+| +..++|+.|+|+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~-g~~~~g~~l~V~ 99 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAV---GKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLT-GQRLLGVPIIVQ 99 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTT---SCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHT-TEEETTEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC---CCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcC-CCEeCCeEEEEE
Confidence 3689999999999999999999999 999999999998 69999999999999999999 777 899999999999
Q ss_pred cCCCC
Q 035741 79 SAKRR 83 (890)
Q Consensus 79 ea~~d 83 (890)
.|+++
T Consensus 100 ~a~~~ 104 (114)
T 2cq4_A 100 ASQAE 104 (114)
T ss_dssp EHHHH
T ss_pred ecCCC
Confidence 87654
No 86
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.49 E-value=4.3e-14 Score=131.22 Aligned_cols=76 Identities=17% Similarity=0.182 Sum_probs=71.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
..+|||+|||+++|+++|+++|++| |+|..++|+.|+ ++||||||+|.+.++|++|+..+| |..++|+.|+|.
T Consensus 40 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~V~ 115 (118)
T 2khc_A 40 GCNLFIYHLPQEFTDTDLASTFLPF---GNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMN-GFQVGTKRLKVQ 115 (118)
T ss_dssp SEEEEEECSCTTCCHHHHHHHTTTS---CEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCC-CCEETTEECCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcC-CCEECCEEEEEE
Confidence 3689999999999999999999999 999999999997 699999999999999999999988 799999999998
Q ss_pred cCC
Q 035741 79 SAK 81 (890)
Q Consensus 79 ea~ 81 (890)
.|+
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 764
No 87
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.48 E-value=7.6e-14 Score=133.14 Aligned_cols=79 Identities=16% Similarity=0.279 Sum_probs=74.3
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
+++|||+|||+++|+++|+++|++| |+|..|+|+.|+ ++||||||+|++.++|++|+..+| |..++|+.|+|.
T Consensus 46 ~~~l~V~nLp~~~te~~L~~~F~~~---G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ln-g~~i~g~~l~V~ 121 (129)
T 2kxn_B 46 NCCLGVFGLSLYTTERDLREVFSKY---GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN-GMELDGRRIRVD 121 (129)
T ss_dssp SSCBCEETCTTSCCHHHHHHHHTTT---SCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHT-TCCSSSSCCEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC-CCEECCEEEEEE
Confidence 4689999999999999999999999 999999999998 699999999999999999999998 799999999999
Q ss_pred cCCCCC
Q 035741 79 SAKRRT 84 (890)
Q Consensus 79 ea~~di 84 (890)
.|.++-
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 987754
No 88
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.48 E-value=1.8e-14 Score=136.95 Aligned_cols=78 Identities=18% Similarity=0.226 Sum_probs=72.6
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEE--EEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCc----cccC
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSG--VEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERL----SYGN 72 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s--~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~----~~~g 72 (890)
.+||||||||+++|+++|+++|++| |.|.+ |+|+.|+ ++||||||+|++. +|.+|+..+| |. .++|
T Consensus 23 ~~~lfV~nL~~~~te~~L~~~F~~~---G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~-g~~~~~~~~g 97 (131)
T 2m2b_A 23 NDTIILRNLNPHSTMDSILGALAPY---AVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQ-ALHPPLTIDG 97 (131)
T ss_dssp CCEEEECSCCTTCCSHHHHHHHGGG---CCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHT-TCCCSCCGGG
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHh---CCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhc-CCCCCccCCC
Confidence 4689999999999999999999999 99988 9999999 6999999999999 9999999998 77 9999
Q ss_pred ceeEEecCCCCC
Q 035741 73 SFLKASSAKRRT 84 (890)
Q Consensus 73 r~L~v~ea~~di 84 (890)
|.|+|+.|++.-
T Consensus 98 r~l~V~~a~~~~ 109 (131)
T 2m2b_A 98 KTINVEFAKGSK 109 (131)
T ss_dssp CCCCCEECCCSC
T ss_pred EEEEEEECCCCC
Confidence 999999997653
No 89
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=6e-14 Score=127.58 Aligned_cols=77 Identities=16% Similarity=0.198 Sum_probs=71.6
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC----CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEE
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK----GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKA 77 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr----~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v 77 (890)
..+|||+|||+++|+++|+++|++| | |.+|+|+.|+ ++||||||+|.+.++|++|+ .+| +..++|+.|+|
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~---G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~-g~~~~g~~l~V 88 (104)
T 1wi8_A 15 PYTAFLGNLPYDVTEESIKEFFRGL---N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLN-EESLGNKRIRV 88 (104)
T ss_dssp CEEEEEESCCSSCCHHHHHHHTTTS---C-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGG-TCEETTEECEE
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHC---C-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcC-CCEeCCcEEEE
Confidence 3689999999999999999999999 9 9999999996 57999999999999999999 777 79999999999
Q ss_pred ecCCCCC
Q 035741 78 SSAKRRT 84 (890)
Q Consensus 78 ~ea~~di 84 (890)
+.|+++-
T Consensus 89 ~~a~~~~ 95 (104)
T 1wi8_A 89 DVADQAQ 95 (104)
T ss_dssp EECCCCC
T ss_pred EEccCCC
Confidence 9998765
No 90
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.4e-14 Score=134.48 Aligned_cols=78 Identities=15% Similarity=0.074 Sum_probs=72.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceE-EEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTV-SGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V-~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
..+|||+|||+++|+++|+++|++| |.| .+|+|+.|+ ++||||||+|++.++|++|+.+ | +..++||.|+|+
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~---g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~-~~~~~gr~i~v~ 89 (114)
T 2cpy_A 15 KVCAHITNIPFSITKMDVLQFLEGI---PVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-H-RKKLNGREAFVH 89 (114)
T ss_dssp CCEEEEESCCTTSCHHHHHHHTTTS---CCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-C-SEEETTEEEEEE
T ss_pred ccEEEEeCcCCcCCHHHHHHHHHhC---CCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-C-CCccCCeEEEEE
Confidence 4689999999999999999999999 999 899999999 7999999999999999999988 5 899999999999
Q ss_pred cCCCCC
Q 035741 79 SAKRRT 84 (890)
Q Consensus 79 ea~~di 84 (890)
.|.++-
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 987654
No 91
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.48 E-value=1.2e-14 Score=140.71 Aligned_cols=77 Identities=19% Similarity=0.290 Sum_probs=71.7
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCce---EEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccccCceeE
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGT---VSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLK 76 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~---V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~ 76 (890)
..+|||+|||+++|+++|++||+++ |. |.+|+|+.|+ +|||||||+|++.++|++|+. +| +..++||.|+
T Consensus 44 ~~~lfVgnLp~~~te~dL~~~F~~~---G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~-g~~l~gr~i~ 118 (136)
T 2hgl_A 44 GFVVKLRGLPWSCSVEDVQNFLSDC---TIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KD-RESMGHRYIE 118 (136)
T ss_dssp TCEEEEESCCTTCCHHHHHHHTTTC---CCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TT-EEESSSSEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHh---CCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cC-CCEECCEEEE
Confidence 3679999999999999999999999 99 8999999999 799999999999999999999 76 7999999999
Q ss_pred EecCCCC
Q 035741 77 ASSAKRR 83 (890)
Q Consensus 77 v~ea~~d 83 (890)
|+.|.++
T Consensus 119 V~~a~~~ 125 (136)
T 2hgl_A 119 VFKSHRT 125 (136)
T ss_dssp EEECCHH
T ss_pred EEECChH
Confidence 9987543
No 92
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.48 E-value=6.2e-14 Score=133.76 Aligned_cols=79 Identities=16% Similarity=0.196 Sum_probs=75.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
.++|||+|||+++|+++|+++|+.| |+|.+|+|+.|+ ++||||||+|++.++|++|+..+| +..++|+.|+|.
T Consensus 42 ~~~l~V~nLp~~~~~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~v~ 117 (139)
T 1u6f_A 42 LRNLMVNYIPTTVDEVQLRQLFERY---GPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLN-GFNILNKRLKVA 117 (139)
T ss_dssp TSEEEEESCSTTCCHHHHHHHHHHH---SCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTT-TEECSSCEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhC-CCEECCeEEEEE
Confidence 4689999999999999999999999 999999999998 589999999999999999999998 799999999999
Q ss_pred cCCCCC
Q 035741 79 SAKRRT 84 (890)
Q Consensus 79 ea~~di 84 (890)
.|+++-
T Consensus 118 ~a~~~~ 123 (139)
T 1u6f_A 118 LAASGH 123 (139)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 998876
No 93
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.48 E-value=1e-13 Score=128.07 Aligned_cols=78 Identities=17% Similarity=0.255 Sum_probs=72.3
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
+.||||||||+++|+++|+++|++| |+|.+|+|+.|+ ++||||||+|.+.++|++|+..+ +..++|+.|+|.
T Consensus 25 ~~~lfV~nLp~~~te~~L~~~F~~~---G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~--~~~l~g~~l~V~ 99 (109)
T 2rs2_A 25 GCKMFIGGLSWQTTQEGLREYFGQF---GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS--RHELDSKTIDPK 99 (109)
T ss_dssp -CCEEEESCCTTCCHHHHHHHHTTT---SCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS--CEEETTEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHcc---CCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC--CCcCCCEEEEEE
Confidence 4689999999999999999999999 999999999997 69999999999999999999984 489999999999
Q ss_pred cCCCCC
Q 035741 79 SAKRRT 84 (890)
Q Consensus 79 ea~~di 84 (890)
.|.++-
T Consensus 100 ~a~~~~ 105 (109)
T 2rs2_A 100 VAFPRR 105 (109)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 998765
No 94
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=2.7e-14 Score=122.18 Aligned_cols=73 Identities=16% Similarity=0.269 Sum_probs=69.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
.||||+|||+++|+++|+++|++| |.|.+++|..++ ++||||||+|.+.++|++|++.++ ..++|+.|+|+.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~---G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~--~~~~g~~l~v~~ 75 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQF---GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR--HELDSKTIDPKV 75 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTT---SCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT--CCCSSCCCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC--CccCCEEEEEEe
Confidence 379999999999999999999999 999999999997 699999999999999999999876 899999999987
Q ss_pred C
Q 035741 80 A 80 (890)
Q Consensus 80 a 80 (890)
|
T Consensus 76 a 76 (77)
T 1uaw_A 76 A 76 (77)
T ss_dssp C
T ss_pred c
Confidence 6
No 95
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.48 E-value=8.8e-14 Score=126.74 Aligned_cols=76 Identities=14% Similarity=0.098 Sum_probs=71.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
+.+|||+|||+.+|+++|+++|++| |.|.+|+|+.++ ++||||||+|.+.++|++|+..+| +..++|+.|+|+-
T Consensus 29 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 29 GGKLLVSNLDFGVSDADIQELFAEF---GTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN-GVPLDGRPMNIQL 104 (107)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTT---SCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT-TCEETTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhC-CCEeCCcEEEEEE
Confidence 4689999999999999999999999 999999999998 789999999999999999999988 7999999999987
Q ss_pred CC
Q 035741 80 AK 81 (890)
Q Consensus 80 a~ 81 (890)
|.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 96
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.47 E-value=2e-14 Score=129.87 Aligned_cols=77 Identities=14% Similarity=0.043 Sum_probs=70.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
..+|||||||+++|+++|+++|++| |.|.+ .++.|+ ++||||||+|++.++|++|++ +| +..++|+.|+|+
T Consensus 17 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~-g~~~~g~~l~V~ 90 (101)
T 1fj7_A 17 PFNLFIGNLNPNKSVAELKVAISEL---FAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LT-GLKVFGNEIKLE 90 (101)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHH---HHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GG-GCCBTTBCCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHh---CCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cC-CcEECCcEEEEE
Confidence 4689999999999999999999999 99998 777776 799999999999999999999 87 799999999999
Q ss_pred cCCCCC
Q 035741 79 SAKRRT 84 (890)
Q Consensus 79 ea~~di 84 (890)
.|+++-
T Consensus 91 ~a~~~~ 96 (101)
T 1fj7_A 91 KPKGRD 96 (101)
T ss_dssp CCSCCC
T ss_pred EcCCCC
Confidence 997654
No 97
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.47 E-value=2.6e-14 Score=127.37 Aligned_cols=76 Identities=14% Similarity=0.122 Sum_probs=71.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
.++|||+|||+++|+++|+++|++| |.|..+.++.++ ++||||||+|.+.++|++|+..+| +..++||.|+|+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~-g~~~~gr~l~v~ 90 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGY---QVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLN-DRPIGSRKVKLS 90 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTS---CBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT-TCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhC-CCeECCcEEEEE
Confidence 3689999999999999999999999 999999999987 689999999999999999999888 799999999999
Q ss_pred cCC
Q 035741 79 SAK 81 (890)
Q Consensus 79 ea~ 81 (890)
.+.
T Consensus 91 ~a~ 93 (95)
T 2ek1_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred ecc
Confidence 764
No 98
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.47 E-value=9.8e-14 Score=125.93 Aligned_cols=78 Identities=13% Similarity=0.147 Sum_probs=72.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
..+|||+|||+++|+++|+++|++| | |.+|+|+.|+ ++||||||+|++.++|++|+ .+| +..++|+.|+|.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~---g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~-g~~~~g~~l~V~ 88 (103)
T 2dng_A 15 PYTAYVGNLPFNTVQGDIDAIFKDL---S-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYD-GALLGDRSLRVD 88 (103)
T ss_dssp CEEEEEESCCTTCCHHHHHHHTTTS---C-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGT-TCEETTEECEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhC---C-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhC-CCeECCeEEEEE
Confidence 3689999999999999999999999 7 9999999998 69999999999999999999 676 899999999999
Q ss_pred cCCCCCC
Q 035741 79 SAKRRTP 85 (890)
Q Consensus 79 ea~~di~ 85 (890)
.|+++--
T Consensus 89 ~a~~~~~ 95 (103)
T 2dng_A 89 IAEGRKQ 95 (103)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9987653
No 99
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=2.6e-14 Score=128.25 Aligned_cols=77 Identities=13% Similarity=0.097 Sum_probs=71.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
.++|||+|||+++|+++|+++|++| |.|..++++.++ ++||||||+|.+.++|++|+..+| +..++|+.|+|.
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~---G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~-g~~~~g~~l~V~ 90 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEILDFFYGY---QVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLN-DRPIGSRKVKLV 90 (98)
T ss_dssp SEEEEEESCCTTCCHHHHHHHTTTS---CCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTT-TCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHc---CCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhC-CCeeCCeEEEEE
Confidence 3679999999999999999999999 999999999887 689999999999999999999988 799999999999
Q ss_pred cCCC
Q 035741 79 SAKR 82 (890)
Q Consensus 79 ea~~ 82 (890)
.|.+
T Consensus 91 ~a~~ 94 (98)
T 2cqp_A 91 LGSG 94 (98)
T ss_dssp ESSC
T ss_pred EcCC
Confidence 8764
No 100
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.47 E-value=2.8e-14 Score=121.71 Aligned_cols=72 Identities=18% Similarity=0.267 Sum_probs=67.7
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecC
Q 035741 4 MIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSA 80 (890)
Q Consensus 4 ti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea 80 (890)
||||+|||+++|+++|+++|++| |+|.+++|..|+ ++||||||+|.+.++|++|+++ + +..++|+.|+|+.|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~-~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGF---GEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-K-YHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHH---SCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-S-SCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-C-CCeECCEEEEEEEC
Confidence 79999999999999999999999 999999999997 6999999999999999999996 4 78899999999865
No 101
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=1.2e-13 Score=132.11 Aligned_cols=78 Identities=10% Similarity=0.190 Sum_probs=71.2
Q ss_pred CceEEEeCCCCCCCHHHHH----HHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEE
Q 035741 2 AKMIMLYGFASLASPKAVK----EFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKA 77 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~----~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v 77 (890)
++||||||||+++++++|+ ++|++| |.|..|.+..+.++||||||+|++.++|+.|+..+| |..+.|+.|+|
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~---G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~ln-g~~l~gr~l~V 104 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQ---GDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQ-GYPFQGNPLVI 104 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHH---SCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHST-TCCCTTSCCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccC---CCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHC-CCEeCCCEEEE
Confidence 4689999999999999977 699999 999998887655899999999999999999999998 79999999999
Q ss_pred ecCCCC
Q 035741 78 SSAKRR 83 (890)
Q Consensus 78 ~ea~~d 83 (890)
+-|+.+
T Consensus 105 ~~a~~~ 110 (127)
T 2a3j_A 105 TFSETP 110 (127)
T ss_dssp EECCCC
T ss_pred EEccCc
Confidence 998754
No 102
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.47 E-value=1.1e-13 Score=129.43 Aligned_cols=77 Identities=9% Similarity=0.175 Sum_probs=72.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
.+|||+|||+++|+++|+++|++| |.|.+|+|..|+ ++||||||+|.+.++|++|+ .+| |..++|+.|+|..
T Consensus 37 ~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~-g~~~~g~~l~V~~ 111 (124)
T 2jwn_A 37 RSVYVGNVDYGSTAQDLEAHFSSC---GSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMD-ETVFRGRTIKVLP 111 (124)
T ss_dssp TEEEEEEECTTCCHHHHHHHHHTT---SCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTT-TCEETTEECEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcC-CCeECCeEEEEEE
Confidence 689999999999999999999999 999999999987 69999999999999999999 566 8999999999999
Q ss_pred CCCCC
Q 035741 80 AKRRT 84 (890)
Q Consensus 80 a~~di 84 (890)
++++.
T Consensus 112 a~~~~ 116 (124)
T 2jwn_A 112 KRTNM 116 (124)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 98765
No 103
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=6.2e-14 Score=129.94 Aligned_cols=77 Identities=17% Similarity=0.316 Sum_probs=73.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
++|||+|||+++|+++|+++|++| |+|..|+|+.|+ ++||||||+|.+.++|++|+.. + +..++|+.|+|..
T Consensus 28 ~~l~V~nLp~~~te~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~-~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 28 RKLFIGGLSFETTEESLRNYYEQW---GKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-R-PHSIDGRVVEPKR 102 (116)
T ss_dssp TEEEEECCTTCCCHHHHHHHHTSS---CCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-C-SEEETTEEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-C-CcEECCEEEEEEE
Confidence 689999999999999999999999 999999999997 6999999999999999999998 5 8999999999999
Q ss_pred CCCCC
Q 035741 80 AKRRT 84 (890)
Q Consensus 80 a~~di 84 (890)
|.++-
T Consensus 103 a~~~~ 107 (116)
T 1x4b_A 103 AVARE 107 (116)
T ss_dssp CSSCC
T ss_pred CCCCc
Confidence 97765
No 104
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.46 E-value=7.7e-14 Score=124.74 Aligned_cols=79 Identities=15% Similarity=0.205 Sum_probs=72.6
Q ss_pred CceEEEeCCCCCCCHHHHH----HHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEE
Q 035741 2 AKMIMLYGFASLASPKAVK----EFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKA 77 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~----~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v 77 (890)
+++|||||||+++|+++|+ ++|++| |+|..++|..+.++||||||+|.+.++|++|+..+| |..++|+.|+|
T Consensus 8 ~~~l~V~nLp~~~~~~~l~~~l~~~f~~~---G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~v 83 (97)
T 1nu4_A 8 NHTIYINNLNEKIKKDELKKSLHAIFSRF---GQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQ-GFPFYDKPMRI 83 (97)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHGGG---SCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHT-TCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhC---CCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhC-CCEECCcEEEE
Confidence 4689999999999999999 999999 999999998544799999999999999999999998 79999999999
Q ss_pred ecCCCCC
Q 035741 78 SSAKRRT 84 (890)
Q Consensus 78 ~ea~~di 84 (890)
..|+++-
T Consensus 84 ~~a~~~~ 90 (97)
T 1nu4_A 84 QYAKTDS 90 (97)
T ss_dssp EECSSCC
T ss_pred EEccCCC
Confidence 9987653
No 105
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=1.1e-13 Score=125.11 Aligned_cols=76 Identities=13% Similarity=0.055 Sum_probs=71.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCCC
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAKR 82 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~~ 82 (890)
.||||||||+++|+++|+++|++| |+|.+++|..+ +||||||+|++.++|++|+..+| +..++|+.|+|..|++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYY---GPLRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLD-GKVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHH---CCCSEEEEESS--SSSEEEEECSSHHHHHHHHHHHH-HSCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHC-CCeECCcEEEEEEccC
Confidence 389999999999999999999999 99999999988 99999999999999999999988 6899999999999976
Q ss_pred CC
Q 035741 83 RT 84 (890)
Q Consensus 83 di 84 (890)
+-
T Consensus 75 ~~ 76 (101)
T 2hvz_A 75 MP 76 (101)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 106
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=2e-13 Score=122.53 Aligned_cols=75 Identities=16% Similarity=0.263 Sum_probs=70.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCcccc--CceeEEec
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYG--NSFLKASS 79 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~--gr~L~v~e 79 (890)
+++|||+|||+++|+++|+++|++| |+|.++++.++ ||||||+|.+.++|++|+..+| +..++ |+.|+|+.
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~v~~v~~~~~---~g~afV~f~~~~~A~~A~~~l~-g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 17 TTRLWVGGLGPNTSLAALAREFDRF---GSIRTIDHVKG---DSFAYIQYESLDAAQAACAKMR-GFPLGGPDRRLRVDF 89 (97)
T ss_dssp CSCEEEECCCSSCCHHHHHHHHHTT---SCEEEEEECSS---SCCEEEEESSHHHHHHHHHHHT-TCBCSSSSCBCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeeEEEEeCC---CCEEEEEECCHHHHHHHHHHHC-CCEeCCCCcEEEEEE
Confidence 4789999999999999999999999 99999999864 8999999999999999999998 78888 99999999
Q ss_pred CCCC
Q 035741 80 AKRR 83 (890)
Q Consensus 80 a~~d 83 (890)
|+++
T Consensus 90 a~~~ 93 (97)
T 1why_A 90 AKSG 93 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8775
No 107
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=7.8e-14 Score=129.92 Aligned_cols=75 Identities=16% Similarity=0.229 Sum_probs=68.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecC
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSA 80 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea 80 (890)
.+|||+|||+++|++||++||++| +|.+|.|..|+ ++||||||+|++.++|++|+. +| +..++||.|.|..|
T Consensus 17 ~~v~V~nLp~~~te~dl~~~F~~~----~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~-~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 17 LYVSVHGMPFSAMENDVRDFFHGL----RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALK-RN-RMLMIQRYVEVSPA 90 (109)
T ss_dssp HEEEEECCCSSCCHHHHHHHTTTS----CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHH-TT-TEEETTEEEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHhccC----CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cC-CCeECCeEEEEEEC
Confidence 479999999999999999999999 37899999998 799999999999999999994 55 89999999999988
Q ss_pred CCC
Q 035741 81 KRR 83 (890)
Q Consensus 81 ~~d 83 (890)
.++
T Consensus 91 ~~~ 93 (109)
T 2dnn_A 91 TER 93 (109)
T ss_dssp CHH
T ss_pred Ccc
Confidence 543
No 108
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.45 E-value=1.4e-13 Score=130.67 Aligned_cols=75 Identities=16% Similarity=0.190 Sum_probs=70.3
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
.++|||+|||+++|+++|+++|++| |+|.+++|..|+ ++||||||+|.+.++|++|+..+| |..++|+.|+|+
T Consensus 63 ~~~l~v~nlp~~~~~~~l~~~f~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~v~ 138 (140)
T 2ku7_A 63 KRVLYVGGLAEEVDDKVLHAAFIPF---GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN-ESELFGRTIRVN 138 (140)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHGGG---SCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHST-EEEETTEEEEEE
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHhc---CCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhC-CCEECCEEEEEE
Confidence 4689999999999999999999999 999999999997 699999999999999999999888 799999999998
Q ss_pred cC
Q 035741 79 SA 80 (890)
Q Consensus 79 ea 80 (890)
-|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 65
No 109
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=2.1e-13 Score=123.62 Aligned_cols=78 Identities=17% Similarity=0.278 Sum_probs=71.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
..+|||+|||+++|+++|+++|++| |+|.+|+|+.|+ ++||||||+|++.++|++|+. + +..++|+.|+|.
T Consensus 15 ~~~l~v~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~-~~~~~g~~l~v~ 88 (103)
T 2cqg_A 15 TSDLIVLGLPWKTTEQDLKEYFSTF---GEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--Q-RHMIDGRWCDCK 88 (103)
T ss_dssp CCCEEEESCCSSCCHHHHHHHHGGG---SCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--S-CEEETTEEEEEE
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhc---CCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--c-CCeeCCeEEEEE
Confidence 3689999999999999999999999 999999999997 699999999999999999998 3 679999999999
Q ss_pred cCCCCCC
Q 035741 79 SAKRRTP 85 (890)
Q Consensus 79 ea~~di~ 85 (890)
.|.++--
T Consensus 89 ~a~~~~~ 95 (103)
T 2cqg_A 89 LPNSKQS 95 (103)
T ss_dssp CCCTTCC
T ss_pred ecCCCCc
Confidence 9977653
No 110
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.45 E-value=2.6e-13 Score=122.75 Aligned_cols=74 Identities=8% Similarity=0.068 Sum_probs=69.2
Q ss_pred CCceEEEeCCCC-CCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 1 MAKMIMLYGFAS-LASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 1 M~kti~Vgnlp~-~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
++++|||||||+ ++|+++|+++|++| |.|.+++| +||||||+|++.++|++|+..+| |..++|+.|+|..
T Consensus 21 ~~~~l~V~nLp~~~~t~~~L~~~F~~~---G~v~~v~i-----~~g~afV~f~~~~~A~~Ai~~l~-g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSKEDLFRIFSPY---GHIMQINI-----KNAFGFIQFDNPQSVRDAIEXES-QEMNFGKKLILEV 91 (97)
T ss_dssp TTCEEEEESCCSSCCCHHHHHHHHGGG---SCEEEEEE-----CSSEEEEEESSHHHHHHHHHHHT-TSEETTEECEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhc---CCEEEEEE-----eCCEEEEEECCHHHHHHHHHHcC-CCEECCEEEEEEe
Confidence 468999999999 99999999999999 99999999 49999999999999999999988 7999999999998
Q ss_pred CCCC
Q 035741 80 AKRR 83 (890)
Q Consensus 80 a~~d 83 (890)
|+..
T Consensus 92 a~~~ 95 (97)
T 2xnq_A 92 SSSN 95 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8653
No 111
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=2.1e-13 Score=126.42 Aligned_cols=77 Identities=16% Similarity=0.043 Sum_probs=72.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCCC
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAKR 82 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~~ 82 (890)
.+|||+|||+++|+++|+++|++| |.|..|.|. ++||||||+|.+.++|++|+..+| |..++|+.|+|.-|+.
T Consensus 11 ~~l~V~nLp~~~te~~L~~~F~~~---G~i~~v~i~---~~~g~afV~f~~~~~A~~Ai~~l~-g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 11 TVILAKNLPAGTLAAEIQETFSRF---GSLGRVLLP---EGGITAIVEFLEPLEARKAFRHLA-YSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTT---SCEEEEECC---SSSSCEEEEESCHHHHHHHHHHHT-TCBSSSSBCEEEEEET
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEe---CCCCEEEEEeCCHHHHHHHHHHhC-CCEECCeEEEEEECCC
Confidence 479999999999999999999999 999999987 589999999999999999999998 8999999999999988
Q ss_pred CCCC
Q 035741 83 RTPH 86 (890)
Q Consensus 83 di~p 86 (890)
+...
T Consensus 84 ~~~~ 87 (111)
T 1whx_A 84 GVFG 87 (111)
T ss_dssp TTTC
T ss_pred CccC
Confidence 8765
No 112
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=2.1e-13 Score=125.33 Aligned_cols=75 Identities=16% Similarity=0.311 Sum_probs=71.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccC-----ceeE
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGN-----SFLK 76 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~g-----r~L~ 76 (890)
..+|||+|||+++|+++|+++|++| |+|..|+|+.| |||||+|++.++|++|+..+| +..++| +.|+
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~-g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 15 ENRVVVSGLPPSGSWQDLKDHMREA---GDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLD-NTKFRSHEGETAYIR 86 (108)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHGGG---SCEEEEEEETT----TEEEEEESSHHHHHHHHHHSS-SEEEECTTSCEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEeEEEEecC----CEEEEEECCHHHHHHHHHHHC-cCCccCCcCcceEEE
Confidence 4689999999999999999999999 99999999987 999999999999999999998 799999 9999
Q ss_pred EecCCCCC
Q 035741 77 ASSAKRRT 84 (890)
Q Consensus 77 v~ea~~di 84 (890)
|+.|+++-
T Consensus 87 V~~a~~~~ 94 (108)
T 1x4c_A 87 VKVDGPRS 94 (108)
T ss_dssp EEESSCCS
T ss_pred EEeCCCCC
Confidence 99998865
No 113
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1.6e-13 Score=119.80 Aligned_cols=74 Identities=15% Similarity=0.235 Sum_probs=68.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCC
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAK 81 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~ 81 (890)
.++|||+|||+++|+++|+++|++| |.|.+++|.. +||||||+|.+.++|++|+..++++..++|+.|+|+.|+
T Consensus 12 ~~~l~V~~l~~~~t~~~l~~~f~~~---G~i~~~~~~~---~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 12 ITTLYVGGLGDTITETDLRNHFYQF---GEIRTITVVQ---RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CCCEEEECCTTTSCHHHHHHHHHTT---SCEEEEEEEG---GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhC---CCEeEEEEEC---CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 4689999999999999999999999 9999999994 689999999999999999998733899999999999874
No 114
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=3e-14 Score=135.58 Aligned_cols=77 Identities=16% Similarity=0.184 Sum_probs=69.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCce----EEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccccCcee
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGT----VSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFL 75 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~----V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L 75 (890)
..+|||+||||++|++||++||++| |. |.+|.|+.|+ +|||||||+|++.++|++|+.. | +..++||+|
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~---g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~-~~~l~gR~i 97 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQH---CPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-H-KDLLGKRYI 97 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTT---SCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-T-TEESSSCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhh---CCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-C-CCeeCCeEE
Confidence 3689999999999999999999999 76 4799999988 7999999999999999999997 5 799999999
Q ss_pred EEecCCCC
Q 035741 76 KASSAKRR 83 (890)
Q Consensus 76 ~v~ea~~d 83 (890)
.|..|.++
T Consensus 98 ~V~~a~~~ 105 (123)
T 2dha_A 98 ELFRSTAA 105 (123)
T ss_dssp CCEEECHH
T ss_pred EEEECCHH
Confidence 99987543
No 115
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=4e-13 Score=118.97 Aligned_cols=75 Identities=11% Similarity=0.150 Sum_probs=70.4
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCC
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAK 81 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~ 81 (890)
.+||||+|||+++|+++|+++|++| |+|.+++|. ||||||+|.+.++|++|+..+| +..++|+.|+|..|+
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 8 MVKLFIGNLPREATEQEIRSLFEQY---GKVLECDII-----KNYGFVHIEDKTAAEDAIRNLH-HYKLHGVNINVEASK 78 (90)
T ss_dssp CEEEEEESCCSSCCHHHHHHHHHTS---SCEEEEEEE-----TTEEEEEESSHHHHHHHHHHHT-TCBCSSCBCEEECSS
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhC---CCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhc-CCccCCcEEEEEECC
Confidence 4689999999999999999999999 999999998 8999999999999999999988 799999999999998
Q ss_pred CCCC
Q 035741 82 RRTP 85 (890)
Q Consensus 82 ~di~ 85 (890)
++--
T Consensus 79 ~~~~ 82 (90)
T 2dnq_A 79 NKSK 82 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7663
No 116
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=4e-13 Score=123.26 Aligned_cols=78 Identities=15% Similarity=0.152 Sum_probs=72.6
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCC
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAK 81 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~ 81 (890)
..+|||+|||+++|+++|+++|++| |+|.+|+|..+ ||||||+|++.++|++|+..+| |..++|+.|+|..|+
T Consensus 25 ~~~l~V~nl~~~~t~~~l~~~F~~~---G~i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 25 NCTVYCGGIASGLTDQLMRQTFSPF---GQIMEIRVFPE---KGYSFVRFSTHESAAHAIVSVN-GTTIEGHVVKCYWGK 97 (109)
T ss_dssp CCEEEEECCSSCCCHHHHHHHHHHH---SCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHT-TCEETTEECEEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHcC-CCEECCcEEEEEecC
Confidence 4689999999999999999999999 99999999965 8999999999999999999988 799999999999998
Q ss_pred CCCCC
Q 035741 82 RRTPH 86 (890)
Q Consensus 82 ~di~p 86 (890)
++--+
T Consensus 98 ~~~~~ 102 (109)
T 1x4g_A 98 ESPDM 102 (109)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 87644
No 117
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.44 E-value=1.1e-13 Score=133.03 Aligned_cols=81 Identities=19% Similarity=0.234 Sum_probs=75.6
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
+.||||+|||+++|+++|+++|++| |.|..|+|+.|+ ++||||||+|++.++|++|+..+| +..++|+.|+|.
T Consensus 47 ~~~l~V~nLp~~~te~~L~~~F~~~---G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~-g~~i~g~~l~V~ 122 (135)
T 2lea_A 47 MTSLKVDNLTYRTSPDTLRRVFEKY---GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMD-GAVLDGRELRVQ 122 (135)
T ss_dssp CCCEEEECCCSSCHHHHHHHHHGGG---SCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTT-TCCSSSSCCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC-CCEECCEEEEEE
Confidence 3589999999999999999999999 999999999997 699999999999999999999888 789999999999
Q ss_pred cCCCCCCC
Q 035741 79 SAKRRTPH 86 (890)
Q Consensus 79 ea~~di~p 86 (890)
-|++.-.|
T Consensus 123 ~a~~~~~~ 130 (135)
T 2lea_A 123 MARYGRPP 130 (135)
T ss_dssp ECCCCCCC
T ss_pred ECCCCCCC
Confidence 99887643
No 118
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=1.4e-13 Score=121.92 Aligned_cols=76 Identities=18% Similarity=0.225 Sum_probs=70.4
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
..+|||+|||+++|+++|+++|++| +|.+|+|+.+. ++||||||+|++.++|++|+. +| +..++||.|+|+.
T Consensus 10 ~~~l~v~nLp~~~t~~~l~~~F~~~----~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~-g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 10 CHTVKLRGAPFNVTEKNVMEFLAPL----KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CN-REYMGGRYIEVFR 83 (91)
T ss_dssp CCEEEEECCCSSCCHHHHHHHHTTS----CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SC-SEEETTEEEEEEE
T ss_pred ccEEEEECCCCCCCHHHHHHHHhhC----CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hC-CceeCCcEEEEEE
Confidence 4689999999999999999999999 48899999987 799999999999999999999 77 8999999999999
Q ss_pred CCCC
Q 035741 80 AKRR 83 (890)
Q Consensus 80 a~~d 83 (890)
|.++
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 8765
No 119
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.44 E-value=7.1e-14 Score=133.70 Aligned_cols=77 Identities=14% Similarity=0.252 Sum_probs=69.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEE-EEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVS-GVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~-s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
..+|||+|||+++|+++|++||++| |.|. +|+|+.|+ +|||||||+|++.++|++|+.+ + +..++||.|+|.
T Consensus 42 ~~~lfVgnLp~~~te~dL~~~F~~~---~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~-~~~l~gR~I~V~ 116 (126)
T 2hgm_A 42 DGFVRLRGLPFGCTKEEIVQFFSGL---EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-H-KERIGHRYIEVF 116 (126)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTTTS---CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-T-TCCBTTBCCCCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcC---CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-C-CCEECCEEEEEE
Confidence 3689999999999999999999999 6553 99999999 7999999999999999999986 4 699999999999
Q ss_pred cCCCC
Q 035741 79 SAKRR 83 (890)
Q Consensus 79 ea~~d 83 (890)
.|.++
T Consensus 117 ~a~~~ 121 (126)
T 2hgm_A 117 KSSQE 121 (126)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 87654
No 120
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.43 E-value=2.4e-13 Score=132.44 Aligned_cols=79 Identities=9% Similarity=0.161 Sum_probs=74.6
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
.++|||+|||+++|+++|+++|++| |+|.+|+|+.++ ++||||||+|++.++|++|+..+| +..++|+.|+|.
T Consensus 39 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~-g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 39 SCTLYVGNLSFYTTEEQIYELFSKS---GDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYIN-GTRLDDRIIRTD 114 (156)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT-TSEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC-CCEECCeEEEEE
Confidence 4689999999999999999999999 999999999998 599999999999999999999988 799999999999
Q ss_pred cCCCCC
Q 035741 79 SAKRRT 84 (890)
Q Consensus 79 ea~~di 84 (890)
.|++.-
T Consensus 115 ~a~~~~ 120 (156)
T 1h2v_Z 115 WDAGFK 120 (156)
T ss_dssp EESCCC
T ss_pred ECCCCC
Confidence 998755
No 121
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.43 E-value=2.4e-13 Score=121.41 Aligned_cols=73 Identities=18% Similarity=0.181 Sum_probs=62.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhc-CccccCceeEEecC
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARE-RLSYGNSFLKASSA 80 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~-~~~~~gr~L~v~ea 80 (890)
..||||||||+++|+++|+++|++| |+|.+|+|+.+ |||||||+|++.++|++ +++ ....+|+.|+|..|
T Consensus 11 ~~~l~V~~Lp~~~te~~L~~~F~~~---G~i~~v~i~~~--srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 11 GSKVFVGRCTEDMTAEELQQFFCQY---GEVVDVFIPKP--FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTT---SCEEEEECCSS--CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcc---CCEEEEEEeeC--CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEc
Confidence 4689999999999999999999999 99999999875 99999999999998873 342 34567999999998
Q ss_pred CCC
Q 035741 81 KRR 83 (890)
Q Consensus 81 ~~d 83 (890)
.++
T Consensus 82 ~~k 84 (89)
T 3d2w_A 82 EPK 84 (89)
T ss_dssp C--
T ss_pred CCC
Confidence 754
No 122
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.43 E-value=4.5e-14 Score=137.10 Aligned_cols=77 Identities=16% Similarity=0.153 Sum_probs=70.4
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
.++|||+|||+++|++||++||++| | |.+|+|+.|+ +|||||||+|++.++|++|+ .+| +..++||.|+|..
T Consensus 46 ~~~lfV~nLp~~~te~dL~~~F~~~---G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~-g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 46 GHCVHMRGLPYKATENDIYNFFSPL---N-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKD-RANMQHRYIELFL 119 (139)
T ss_dssp CCCEECCSCCTTCCHHHHHHHHCSC---C-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCC-SCSSSSCCCCCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---C-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhC-CCEECCEEEEEEE
Confidence 4689999999999999999999999 9 6699999999 79999999999999999999 445 8999999999998
Q ss_pred CCCCC
Q 035741 80 AKRRT 84 (890)
Q Consensus 80 a~~di 84 (890)
+.+.-
T Consensus 120 a~~~~ 124 (139)
T 2hgn_A 120 NSTTG 124 (139)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 87654
No 123
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=3.3e-13 Score=121.85 Aligned_cols=76 Identities=20% Similarity=0.253 Sum_probs=69.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
.++|||+|||+++|+++|+++|++| |.| +|+.+. ++||||||+|.+.++|++|+..+| +..++|+.|+|..
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~---g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 15 SKTLVLSNLSYSATEETLQEVFEKA---TFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCN-KREIEGRAIRLEL 87 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHHCSSC---SEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTS-SEEETTEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC---CEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhC-CCEeCCeEEEEEE
Confidence 5789999999999999999999999 988 666665 799999999999999999999888 7999999999999
Q ss_pred CCCCC
Q 035741 80 AKRRT 84 (890)
Q Consensus 80 a~~di 84 (890)
|+++-
T Consensus 88 a~~~~ 92 (101)
T 2fc9_A 88 QGPRG 92 (101)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 98775
No 124
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.42 E-value=3.2e-13 Score=124.74 Aligned_cols=74 Identities=19% Similarity=0.197 Sum_probs=70.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCC
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAK 81 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~ 81 (890)
.++|||||||+++|+++|+++|++| |.|..++|. ||||||+|.+.++|++|+..+| |..++|+.|+|..|+
T Consensus 31 ~~~l~V~nLp~~~t~~~L~~~F~~~---G~i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~-g~~~~g~~l~V~~a~ 101 (108)
T 2jvo_A 31 NTRLFVRPFPLDVQESELNEIFGPF---GPMKEVKIL-----NGFAFVEFEEAESAAKAIEEVH-GKSFANQPLEVVYSK 101 (108)
T ss_dssp CSEEEECSSCTTCCHHHHHHHHTTT---SCCCEEEEE-----TTEEEEECSSHHHHHHHHHHHT-TCEETTEECEEESCS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhc---CCEEEEEEE-----CCEEEEEECCHHHHHHHHHHcC-CCEECCeEEEEEEec
Confidence 4689999999999999999999999 999999998 8999999999999999999998 799999999999998
Q ss_pred CCC
Q 035741 82 RRT 84 (890)
Q Consensus 82 ~di 84 (890)
++-
T Consensus 102 ~~~ 104 (108)
T 2jvo_A 102 LPA 104 (108)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 125
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=5.7e-13 Score=120.03 Aligned_cols=76 Identities=18% Similarity=0.135 Sum_probs=69.7
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCC
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAK 81 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~ 81 (890)
.++|||+|||+++|+++|+++|++| |.|.|..+++ +||||||+|.+.++|++|+..+| +..++|+.|+|..|+
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~-g~g~v~~~~~-----~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 15 VKILYVRNLMLSTSEEMIEKEFNNI-KPGAVERVKK-----IRDYAFVHFSNREDAVEAMKALN-GKVLDGSPIEVTLAK 87 (99)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTT-STTCEEEEEE-----CSSEEEEEESSHHHHHHHHHHHS-SEEETTEEEEEECCC
T ss_pred cCEEEEeCCCCCCCHHHHHHHHHhc-CCcceEEEEE-----eCCeEEEEeCCHHHHHHHHHHhC-CCEeCCcEEEEEECC
Confidence 3689999999999999999999999 6689999876 48999999999999999999888 799999999999998
Q ss_pred CCC
Q 035741 82 RRT 84 (890)
Q Consensus 82 ~di 84 (890)
++-
T Consensus 88 ~~~ 90 (99)
T 2cpd_A 88 PVD 90 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 126
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=3.5e-13 Score=124.30 Aligned_cols=77 Identities=9% Similarity=0.083 Sum_probs=70.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccc--------c
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSY--------G 71 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~--------~ 71 (890)
..+|||+|||+++|+++|+++|++| |+|.+++|..|+ ++||||||+|.+.++|++|+..+| |..+ .
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 25 PTNLYISNLPLSMDEQELENMLKPF---GQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFN-GKFIKTPPGVSAP 100 (114)
T ss_dssp TTEEEEESCCTTCCHHHHHHTTTTT---SCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHB-TCCCCCCTTSCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhC-CCEEcCCccccCC
Confidence 3589999999999999999999999 999999999998 689999999999999999999998 6777 5
Q ss_pred CceeEEecCCC
Q 035741 72 NSFLKASSAKR 82 (890)
Q Consensus 72 gr~L~v~ea~~ 82 (890)
|+.|+|.-|++
T Consensus 101 ~~~l~v~~a~p 111 (114)
T 1x5o_A 101 TEPLLCKFSGP 111 (114)
T ss_dssp SSCBEEEECCC
T ss_pred CCceeEEccCC
Confidence 77788877764
No 127
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=2.6e-13 Score=122.28 Aligned_cols=76 Identities=11% Similarity=0.168 Sum_probs=70.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCC
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAK 81 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~ 81 (890)
.++|||+|||+++|+++|+++|++| |+|..++|. ++||||||+|.+.++|++|+..+| +..++|+.|+|..|+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~~~---~~kg~afV~f~~~~~a~~a~~~l~-g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 15 RSRLFVGNLPPDITEEEMRKLFEKY---GKAGEVFIH---KDKGFGFIRLETRTLAEIAKVELD-NMPLRGKQLRVRFAC 87 (99)
T ss_dssp TTEEEEESCCTTCCHHHHHHHTSTT---CCCSEEEEE---TTTTEEEEECSSSHHHHHHHHHHT-TCCBTTBCCEEEESS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhc---CCeEEEEEe---cCCCEEEEEECCHHHHHHHHHHhC-CCEeCCceEEEEEcC
Confidence 3689999999999999999999999 999999998 568999999999999999999998 789999999999987
Q ss_pred CCC
Q 035741 82 RRT 84 (890)
Q Consensus 82 ~di 84 (890)
+.-
T Consensus 88 ~~~ 90 (99)
T 2cpj_A 88 HSA 90 (99)
T ss_dssp CCS
T ss_pred CCC
Confidence 754
No 128
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.42 E-value=3.6e-13 Score=130.44 Aligned_cols=76 Identities=12% Similarity=0.064 Sum_probs=71.3
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCC
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAK 81 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~ 81 (890)
.++|||||||+++|+++|+++|++| |.|.+|+|..| +||||||+|.+.++|++|+..+| |..++|+.|+|..|+
T Consensus 73 ~~~l~V~nl~~~~t~~~l~~~F~~~---G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 73 DCKVYVGNLGNNGNKTELERAFGYY---GPLRSVWVARN--PPGFAFVEFEDPRDAADAVRELD-GRTLCGCRVRVELSN 146 (150)
T ss_dssp SCEEEEESCCSCCSCHHHHHHHHHH---SCEEEEEECSS--SCSEEEEEESSHHHHHHHHHHHS-SSCSSSSCCEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhh---CCEEEEEEeeC--CCcEEEEEECCHHHHHHHHHHcC-CCEECCeEEEEEEcC
Confidence 3689999999999999999999999 99999999877 89999999999999999999888 799999999999987
Q ss_pred CC
Q 035741 82 RR 83 (890)
Q Consensus 82 ~d 83 (890)
++
T Consensus 147 ~~ 148 (150)
T 2i2y_A 147 GE 148 (150)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 129
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.42 E-value=1.4e-13 Score=143.56 Aligned_cols=78 Identities=9% Similarity=0.112 Sum_probs=73.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCc--eEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEE
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEG--TVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKA 77 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G--~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v 77 (890)
.||||+|||+++|+++|+++|++| | +|.+|+|+.|+ ++||||||+|++.++|++||..+| +..++|+.|+|
T Consensus 69 ~~lfVgnL~~~~te~~L~~~F~~~---G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~ln-g~~~~Gr~l~V 144 (229)
T 3q2s_C 69 IALYIGNLTWWTTDEDLTEAVHSL---GVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLP-KRELHGQNPVV 144 (229)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHTT---TCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTST-TSCBTTBCCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHH---CCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC-CCeECCEEeEE
Confidence 479999999999999999999999 9 99999999998 799999999999999999999888 79999999999
Q ss_pred ecCCCCC
Q 035741 78 SSAKRRT 84 (890)
Q Consensus 78 ~ea~~di 84 (890)
+.|++.-
T Consensus 145 ~~a~~~~ 151 (229)
T 3q2s_C 145 TPVNKQF 151 (229)
T ss_dssp EECCHHH
T ss_pred EECCCCc
Confidence 9886543
No 130
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=7e-13 Score=117.42 Aligned_cols=74 Identities=11% Similarity=0.125 Sum_probs=69.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCC
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAK 81 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~ 81 (890)
+++|||+|||+++|+++|+++|++| |+|..++|. ||||||+|.+.++|++|+..+| +..++|+.|+|..|+
T Consensus 9 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~v~~~~~~-----~~~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 9 TWKIFVGNVSAACTSQELRSLFERR---GRVIECDVV-----KDYAFVHMEKEADAKAAIAQLN-GKEVKGKRINVELST 79 (90)
T ss_dssp SCCEEEESCCTTCCHHHHHHHHHHH---SCEEEEEEC-----SSCEEEEESCHHHHHHHHHHHT-TCEETTEECEEEESC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHcC---CCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhC-CCEECCcEEEEEECC
Confidence 4689999999999999999999999 999999997 6699999999999999999998 799999999999998
Q ss_pred CCC
Q 035741 82 RRT 84 (890)
Q Consensus 82 ~di 84 (890)
+.-
T Consensus 80 ~~~ 82 (90)
T 2dnp_A 80 KGQ 82 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 775
No 131
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.42 E-value=3.1e-13 Score=124.20 Aligned_cols=77 Identities=14% Similarity=0.202 Sum_probs=71.3
Q ss_pred CCceEEEeCCCCC-CCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 1 MAKMIMLYGFASL-ASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 1 M~kti~Vgnlp~~-~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
|+.+|||+|||+. +|+++|+++|++| |.|..|+| +||||||+|++.++|++|+..+| +..++|+.|+|..
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~---G~v~~v~i-----~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKY---GRVAGCSV-----HKGYAFVQYSNERHARAAVLGEN-GRVLAGQTLDINM 96 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGG---SCCSEEEE-----ETTEEEEECSSSHHHHHHHHHHT-TCEETTEECCEEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhC---CCeEEEEE-----eCCEEEEEECCHHHHHHHHHHcC-CCEECCeEEEEEE
Confidence 4579999999999 9999999999999 99999999 79999999999999999999888 7999999999999
Q ss_pred CCCCCCC
Q 035741 80 AKRRTPH 86 (890)
Q Consensus 80 a~~di~p 86 (890)
|+++--+
T Consensus 97 a~~~~~~ 103 (110)
T 1wf1_A 97 AGEPKPD 103 (110)
T ss_dssp SCCCCSC
T ss_pred CCCCCCC
Confidence 9865544
No 132
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.41 E-value=9.8e-14 Score=125.53 Aligned_cols=75 Identities=17% Similarity=0.263 Sum_probs=70.3
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
..+|||||||+++|+++|+++|++| |+|.+++|..|+ ++||||||+|++.++|++|+. + +..++|+.|.|..
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~-~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARY---GSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--S-QINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--C-CCEETTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC---CCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--C-CCeECCEEEEEEE
Confidence 5789999999999999999999999 999999999998 699999999999999999999 5 7999999999988
Q ss_pred CCC
Q 035741 80 AKR 82 (890)
Q Consensus 80 a~~ 82 (890)
|.+
T Consensus 83 a~~ 85 (102)
T 2xs2_A 83 AIR 85 (102)
T ss_dssp EEE
T ss_pred CCc
Confidence 753
No 133
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.41 E-value=2.3e-13 Score=120.34 Aligned_cols=77 Identities=13% Similarity=0.094 Sum_probs=70.7
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCC
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAK 81 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~ 81 (890)
..||||||||+++|+++|+++|++| +|..++|. ++||||||+|++.++|++|+..+| |..++|+.|+|+.|.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~----~v~~~~i~---~~~g~afV~f~~~~~a~~Ai~~l~-g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY----DLKYCYVD---RNKRTAFVTLLNGEQAQNAIQMFH-QYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS----CCCCEEEE---GGGTEEEECCSCHHHHHHHHHHHT-TEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC----CeEEEEEe---CCCcEEEEEECCHHHHHHHHHHhC-CCeECCcEEEEEEcC
Confidence 5689999999999999999999999 47788884 799999999999999999999988 899999999999998
Q ss_pred CCCCC
Q 035741 82 RRTPH 86 (890)
Q Consensus 82 ~di~p 86 (890)
.+.+.
T Consensus 77 ~~~~~ 81 (88)
T 1wg1_A 77 TDALL 81 (88)
T ss_dssp CCCCC
T ss_pred CCceE
Confidence 88754
No 134
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.41 E-value=8.5e-13 Score=126.78 Aligned_cols=78 Identities=13% Similarity=0.206 Sum_probs=73.8
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecC
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSA 80 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea 80 (890)
+||||+|||+++|+++|+++|++| |.|.+++|..++ ++||||||+|.+.++|++|+..+| |..++|+.|+|+.+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~---G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-~~~~~g~~i~v~~~ 76 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVG---GPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLN-GKQIENNIVKINWA 76 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGG---SCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHT-TCEETTEECEEEEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhc---CCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcC-CCccCCCeeEEEEc
Confidence 589999999999999999999999 999999999999 799999999999999999998888 89999999999998
Q ss_pred CCCC
Q 035741 81 KRRT 84 (890)
Q Consensus 81 ~~di 84 (890)
.+.-
T Consensus 77 ~~~~ 80 (166)
T 3md3_A 77 FQSQ 80 (166)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7665
No 135
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.41 E-value=3.3e-13 Score=121.28 Aligned_cols=76 Identities=7% Similarity=0.037 Sum_probs=70.1
Q ss_pred CceEEEeCCCC-CCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecC
Q 035741 2 AKMIMLYGFAS-LASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSA 80 (890)
Q Consensus 2 ~kti~Vgnlp~-~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea 80 (890)
+++|||||||+ ++|+++|+++|++| |.|.+++| +||||||+|.+.++|++|+..+| |..++|+.|+|..|
T Consensus 10 ~~~l~V~nlp~~~~t~~~l~~~F~~~---G~v~~v~i-----~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 10 KSRLFIGNLPLKNVSKEDLFRIFSPY---GHIMQINI-----KNAFGFIQFDNPQSVRDAIECES-QEMNFGKKLILEVS 80 (96)
T ss_dssp CEEEEEESSTTSCCCHHHHHHHHTTT---CCCCEEEE-----ETTEEEEEESCHHHHHHHHHHHT-CSSCBTTTBCEEEE
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhc---CCEEEEEE-----eCCEEEEEECCHHHHHHHHHHcC-CCeeCCcEEEEEEc
Confidence 46899999999 99999999999999 99999999 48999999999999999999988 79999999999999
Q ss_pred CCCCCC
Q 035741 81 KRRTPH 86 (890)
Q Consensus 81 ~~di~p 86 (890)
+++--|
T Consensus 81 ~~~~~~ 86 (96)
T 2kvi_A 81 SSNARP 86 (96)
T ss_dssp ECCCC-
T ss_pred CcCCCC
Confidence 877644
No 136
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=4.7e-13 Score=123.44 Aligned_cols=78 Identities=13% Similarity=0.119 Sum_probs=70.3
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceE----EEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEE
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTV----SGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKA 77 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V----~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v 77 (890)
+.+|||+|||+++|+++|+++|++| |.| ..+++. ..++||||||+|.+.++|++|+..+| +..++|+.|+|
T Consensus 25 ~~~l~V~nLp~~~t~~~l~~~f~~~---G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~-g~~~~g~~l~v 99 (115)
T 2cpx_A 25 NKVLYLKNLSPRVTERDLVSLFARF---QEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVN-GYKLYGKILVI 99 (115)
T ss_dssp CSEEEEECCCTTCCHHHHHHHTHHH---HHSSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHST-TCBCSSCBCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHh---CCccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhC-CCEeCCcEEEE
Confidence 3689999999999999999999999 999 555555 33799999999999999999999998 79999999999
Q ss_pred ecCCCCC
Q 035741 78 SSAKRRT 84 (890)
Q Consensus 78 ~ea~~di 84 (890)
..|+++-
T Consensus 100 ~~a~~~~ 106 (115)
T 2cpx_A 100 EFGKNKK 106 (115)
T ss_dssp EECCCCS
T ss_pred EEccCCC
Confidence 9998776
No 137
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=7.2e-13 Score=117.78 Aligned_cols=76 Identities=12% Similarity=0.106 Sum_probs=70.3
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCC
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAK 81 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~ 81 (890)
.++|||+|||+++|+++|+++|++| |+|..++|. |+||||+|++.++|++|+..+| +..++|+.|+|+.|+
T Consensus 10 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~v~~v~~~-----~~~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 10 STKLHVGNISPTCTNQELRAKFEEY---GPVIECDIV-----KDYAFVHMERAEDAVEAIRGLD-NTEFQGKRMHVQLST 80 (92)
T ss_dssp SEEEEEESCCSSCCHHHHHHHHHTT---SCCCEEEEC-----SSEEEEEESCHHHHHHHHHHHT-TEEETTEEEEEEESS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEE-----CCEEEEEECCHHHHHHHHHHhC-CCeeCCcEEEEEEcc
Confidence 4689999999999999999999999 999999997 6699999999999999999988 799999999999998
Q ss_pred CCCCC
Q 035741 82 RRTPH 86 (890)
Q Consensus 82 ~di~p 86 (890)
++--+
T Consensus 81 ~~~~~ 85 (92)
T 2dgt_A 81 SRLRT 85 (92)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 77643
No 138
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=5.5e-14 Score=132.29 Aligned_cols=77 Identities=18% Similarity=0.251 Sum_probs=69.7
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
..+|||+|||+++|+++|+++|++| |.|..+.++.++ ++||||||+|++.++|++|+. +| +..++||.|+|+
T Consensus 25 ~~~l~V~nLp~~~te~~l~~~F~~~---G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~-g~~~~gr~i~V~ 99 (124)
T 1wel_A 25 GFCVYLKGLPFEAENKHVIDFFKKL---DIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RH-KQYMGNRFIQVH 99 (124)
T ss_dssp CCEEEEECCCTTCCHHHHHHHSCSS---CBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SC-SBCSTTSCBEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhc---CCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hC-CCeECCcEEEEE
Confidence 3589999999999999999999999 999986666665 699999999999999999999 66 899999999999
Q ss_pred cCCCC
Q 035741 79 SAKRR 83 (890)
Q Consensus 79 ea~~d 83 (890)
.|.+.
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 88654
No 139
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.40 E-value=2.4e-13 Score=121.42 Aligned_cols=77 Identities=14% Similarity=0.112 Sum_probs=68.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCC
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAK 81 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~ 81 (890)
.++|||+|||+++|+++|+++|++| |.|..+ ....++||||||+|.+.++|++|+..+| |..++|+.|+|..|.
T Consensus 16 ~~~l~V~nL~~~~t~~~l~~~F~~~---g~v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 16 ARTLLAKNLSFNITEDELKEVFEDA---LEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQ-GAEIDGRSVSLYYTG 89 (96)
T ss_dssp GGEEEEESCCSSCCHHHHHHHHCSE---EEECCE--EETTEEEEEEEEEESSHHHHHHHHHHTT-EEEETTEEEEEEECS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC---CcEEEe--CCCCCcceEEEEEECCHHHHHHHHHHhC-CCEECCeEEEEEEcC
Confidence 4689999999999999999999999 988766 2233799999999999999999999988 799999999999987
Q ss_pred CCC
Q 035741 82 RRT 84 (890)
Q Consensus 82 ~di 84 (890)
++-
T Consensus 90 ~~~ 92 (96)
T 1fjc_A 90 EKG 92 (96)
T ss_dssp SSC
T ss_pred CCC
Confidence 653
No 140
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.40 E-value=4.9e-13 Score=131.95 Aligned_cols=79 Identities=13% Similarity=0.123 Sum_probs=74.3
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
+.||||+|||+++|+++|+++|++| |.|..|.|+.++ ++||||||+|.+.++|++|+..+| |..++|+.|+|.
T Consensus 72 ~~~l~V~nLp~~~t~~~L~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~-g~~~~g~~l~V~ 147 (165)
T 1rk8_A 72 GWILFVTSIHEEAQEDEIQEKFCDY---GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALN-GAEIMGQTIQVD 147 (165)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHT-TCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhhcC---CCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhC-CCEECCEEEEEE
Confidence 3579999999999999999999999 999999999997 589999999999999999999998 799999999999
Q ss_pred cCCCCC
Q 035741 79 SAKRRT 84 (890)
Q Consensus 79 ea~~di 84 (890)
.|.++-
T Consensus 148 ~a~~~~ 153 (165)
T 1rk8_A 148 WCFVKG 153 (165)
T ss_dssp ESEECC
T ss_pred EecCCC
Confidence 997766
No 141
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=7.4e-13 Score=118.33 Aligned_cols=76 Identities=21% Similarity=0.309 Sum_probs=68.3
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC-CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecC
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK-GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSA 80 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr-~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea 80 (890)
.++|||||||+++|+++|+++|++| |+|..| +.|+ ..+ ||||+|.+.++|++|++ +| +..++|+.|+|+.|
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~---G~v~~v--~~~~~~g~-~afV~f~~~~~a~~ai~-l~-g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAF---GPVASV--VMDKDKGV-FAIVEMGDVGAREAVLS-QS-QHSLGGHRLRVRPR 79 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGT---SCEEEE--EECSSSCC-EEEEEESSHHHHHHHHT-CS-CCEETTEECCCBCS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhc---CCeEEE--EEcCCCCc-EEEEEECCHHHHHHHHh-cC-CeEECCEEEEEEEC
Confidence 3689999999999999999999999 999987 6676 444 99999999999999999 77 89999999999999
Q ss_pred CCCCC
Q 035741 81 KRRTP 85 (890)
Q Consensus 81 ~~di~ 85 (890)
.++-.
T Consensus 80 ~~~~~ 84 (94)
T 2e5g_A 80 EQKEF 84 (94)
T ss_dssp CCSCC
T ss_pred CcCCC
Confidence 76653
No 142
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.39 E-value=6.5e-13 Score=135.64 Aligned_cols=79 Identities=11% Similarity=0.032 Sum_probs=73.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
+.||||||||+++|+++|+++|++| |+|.+|+|+.|+ ++||||||+|.+.++|++|+..+| +..+.|+.|++.
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~---G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~-~~~~~g~~i~~~ 90 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPA---GPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN-FDVIKGKPVRIM 90 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-TCEETTEECEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhh---CCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhh-hhhcCCcccccc
Confidence 3589999999999999999999999 999999999998 699999999999999999999998 799999999999
Q ss_pred cCCCCC
Q 035741 79 SAKRRT 84 (890)
Q Consensus 79 ea~~di 84 (890)
.+....
T Consensus 91 ~~~~~~ 96 (213)
T 4f02_A 91 WSQRDP 96 (213)
T ss_dssp ECCCCT
T ss_pred cccccc
Confidence 876544
No 143
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=3.2e-13 Score=120.16 Aligned_cols=75 Identities=5% Similarity=0.091 Sum_probs=68.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCce-EEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcC-ccccCceeEEec
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGT-VSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARER-LSYGNSFLKASS 79 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~-V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~-~~~~gr~L~v~e 79 (890)
.++|||+|||+++|+++|+++|++| |. |..+.+ .+||||||+|.+.++|++|+..+| + ..++|+.|+|+.
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~vv~~~~~----~~~g~afV~f~~~~~A~~A~~~l~-g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 8 MNKLYIGNLSPAVTADDLRQLFGDR---KLPLAGQVL----LKSGYAFVDYPDQNWAIRAIETLS-GKVELHGKIMEVDY 79 (93)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHT---TCCCSSCEE----EETTEEEECCSCHHHHHHHHHHHT-TTCEETTEECEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHc---CCceEEEEE----cCCCEEEEEECCHHHHHHHHHHcc-CCeeECCEEEEEEE
Confidence 4689999999999999999999999 98 666655 479999999999999999999998 7 899999999999
Q ss_pred CCCCC
Q 035741 80 AKRRT 84 (890)
Q Consensus 80 a~~di 84 (890)
|+++-
T Consensus 80 a~~~~ 84 (93)
T 2cqh_A 80 SVSKK 84 (93)
T ss_dssp CCCCC
T ss_pred ccCcc
Confidence 98765
No 144
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.39 E-value=4.2e-13 Score=137.10 Aligned_cols=77 Identities=19% Similarity=0.201 Sum_probs=73.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC-CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCC
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK-GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAK 81 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr-~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~ 81 (890)
++|||+|||+++|+++|+++|++| |+|.+|+|+.|+ ++||||||+|.+.++|++|+..+| |..++|+.|+|+.|+
T Consensus 104 ~~l~v~nl~~~~t~~~l~~~F~~~---G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~ln-g~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 104 GNIFIKNLDKSIDNKALYDTFSAF---GNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN-GMLLNDRKVFVGRFK 179 (213)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHT-TCEETTEECEEEECC
T ss_pred ccceECCcccccHHHHHHHHHhhc---CCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhC-CCEECCEEEEEEEcC
Confidence 579999999999999999999999 999999999999 799999999999999999999998 899999999999887
Q ss_pred CC
Q 035741 82 RR 83 (890)
Q Consensus 82 ~d 83 (890)
++
T Consensus 180 ~~ 181 (213)
T 4f02_A 180 SR 181 (213)
T ss_dssp CH
T ss_pred CC
Confidence 54
No 145
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=4.9e-13 Score=120.76 Aligned_cols=76 Identities=16% Similarity=0.207 Sum_probs=69.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
.++|||+|||+++|+++|+++|+++ + .++++.++ ++||||||+|++.++|++|+..+| +..++|+.|+|.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~---~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~V~ 87 (102)
T 2fc8_A 15 SKTLFVKGLSEDTTEETLKESFDGS---V---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAME-DGEIDGNKVTLD 87 (102)
T ss_dssp CSSEEEECCCTTCCHHHHHHTSTTC---S---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHT-TCEETTEECEEE
T ss_pred CCEEEEeCCCCccCHHHHHHHhcCC---e---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhC-CCeECCeEEEEE
Confidence 4689999999999999999999988 4 56777776 689999999999999999999988 799999999999
Q ss_pred cCCCCC
Q 035741 79 SAKRRT 84 (890)
Q Consensus 79 ea~~di 84 (890)
.|+++-
T Consensus 88 ~a~~~~ 93 (102)
T 2fc8_A 88 WAKPKG 93 (102)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 998765
No 146
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.39 E-value=8.8e-13 Score=119.79 Aligned_cols=75 Identities=12% Similarity=0.125 Sum_probs=69.9
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCCC
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAKR 82 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~~ 82 (890)
++|||+|||+++|+++|+++|++| |.|..|+|. ||||||+|.+.++|++|+..+| +..+.|+.|+|..|++
T Consensus 12 ~~l~V~nl~~~~t~~~l~~~F~~~---G~i~~v~~~-----~~~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 12 KVLFVRNLANTVTEEILEKAFSQF---GKLERVKKL-----KDYAFIHFDERDGAVKAMEEMN-GKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCEEEECCCTTCCHHHHHHHHHHH---SCEEEEEEC-----SSCEEEEESSHHHHHHHHHHHT-TEEETTEEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEE-----CCEEEEEeCCHHHHHHHHHHHC-CCccCCCEEEEEEcCC
Confidence 679999999999999999999999 999999986 7899999999999999999988 7899999999999987
Q ss_pred CCCC
Q 035741 83 RTPH 86 (890)
Q Consensus 83 di~p 86 (890)
+--.
T Consensus 83 ~~~~ 86 (103)
T 2dgu_A 83 PDQK 86 (103)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 6643
No 147
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.37 E-value=1.1e-12 Score=130.99 Aligned_cols=77 Identities=13% Similarity=0.107 Sum_probs=69.8
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCcccc--CceeEEecCC
Q 035741 4 MIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYG--NSFLKASSAK 81 (890)
Q Consensus 4 ti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~--gr~L~v~ea~ 81 (890)
+|||+|||+.+|+++|+++|++| |+|..|.|.. +++||||||||++.++|++|+..+| |..+. |+.|+|+.|+
T Consensus 48 ~l~VgNL~~~vted~L~~~Fs~f---G~V~~V~i~~-k~~rgfAFVeF~d~~~A~~Ai~~Ln-G~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 48 RIIVENLFYPVTLDVLHQIFSKF---GTVLKIITFT-KNNQFQALLQYADPVSAQHAKLSLD-GQNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEECSCCSCCCHHHHHHHHHHH---SCEEEEEEEE-SSSCEEEEEEESCHHHHHHHHHHST-TBCSSSSCSCEEEEECS
T ss_pred EEEEeCcCCCCCHHHHHHHHHhc---CCEEEEEEEe-CCCCCEEEEEECCHHHHHHHHHHhC-CCEecCCCcEEEEEEec
Confidence 58999999999999999999999 9999999875 4589999999999999999999998 78774 4999999998
Q ss_pred CCCC
Q 035741 82 RRTP 85 (890)
Q Consensus 82 ~di~ 85 (890)
++-+
T Consensus 123 ~~~l 126 (164)
T 1sjr_A 123 LTSL 126 (164)
T ss_dssp SSSC
T ss_pred CCcc
Confidence 7643
No 148
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=8.7e-13 Score=124.23 Aligned_cols=76 Identities=12% Similarity=0.121 Sum_probs=68.4
Q ss_pred CceEEE--eCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccc-----cCce
Q 035741 2 AKMIML--YGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSY-----GNSF 74 (890)
Q Consensus 2 ~kti~V--gnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~-----~gr~ 74 (890)
+++||| ||||+++|+++|+++|++| |+|.+|.|.+ +||||||+|++.++|++|+..+| |..+ +|+.
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~~~F~~f---G~v~~v~i~~---~rgfaFV~f~~~~~A~~Ai~~ln-G~~~~~~lg~g~~ 97 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLLPVLEKC---GLVDALLMPP---NKPYSFARYRTTEESKRAYVTLN-GKEVVDDLGQKIT 97 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHHHHHHHH---SCEEEEECCT---TCSCEEEEESSHHHHHHHHHHTT-TCEEECTTSCEEE
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHhc---CCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhC-CCEEccccCCCcE
Confidence 468999 8899999999999999999 9999999874 58999999999999999999998 6776 7999
Q ss_pred eEEecCCCCC
Q 035741 75 LKASSAKRRT 84 (890)
Q Consensus 75 L~v~ea~~di 84 (890)
|.|..|+..-
T Consensus 98 l~v~~a~~~p 107 (114)
T 2cq2_A 98 LYLNFVEKVQ 107 (114)
T ss_dssp CEEEEESCCC
T ss_pred EEEEecccCc
Confidence 9999987443
No 149
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.06 E-value=4.9e-14 Score=130.80 Aligned_cols=79 Identities=16% Similarity=0.265 Sum_probs=73.7
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEE--------EEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccc
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSG--------VEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSY 70 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s--------~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~ 70 (890)
..+|||+|||+++|+++|+++|++| |.|.+ |+|..|+ ++||||||+|.+.++|++|+..+| +..+
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~-g~~~ 82 (116)
T 2lcw_A 7 NNTIFVQGLGENVTIESVADYFKQI---GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD-GKEF 82 (116)
Confidence 3689999999999999999999999 99999 9999997 699999999999999999999888 7999
Q ss_pred cCceeEEecCCCCC
Q 035741 71 GNSFLKASSAKRRT 84 (890)
Q Consensus 71 ~gr~L~v~ea~~di 84 (890)
+|+.|+|..|+++-
T Consensus 83 ~g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 83 SGNPIKVSFATRRA 96 (116)
Confidence 99999999987654
No 150
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.37 E-value=1.6e-12 Score=130.87 Aligned_cols=81 Identities=11% Similarity=0.203 Sum_probs=76.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
.++|||+|||+++|+++|+++|++| |+|..|+|..|+ ++||||||+|.+.++|.+|+..+| |..++|+.|+|+
T Consensus 125 ~~~l~v~nlp~~~t~~~l~~~f~~~---G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~-g~~~~g~~i~V~ 200 (216)
T 2qfj_A 125 FNRIYVASVHQDLSDDDIKSVFEAF---GKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN-LFDLGGQYLRVG 200 (216)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHTTS---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-TCBCSSSBCEEE
T ss_pred CcEEEEeCCCCcCCHHHHHHHHhcc---CCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHcc-CCEeCCcEEEEE
Confidence 3689999999999999999999999 999999999997 689999999999999999999998 799999999999
Q ss_pred cCCCCCCC
Q 035741 79 SAKRRTPH 86 (890)
Q Consensus 79 ea~~di~p 86 (890)
.|.+.-.|
T Consensus 201 ~a~~~~~~ 208 (216)
T 2qfj_A 201 KAVTPPMP 208 (216)
T ss_dssp ECSSCSST
T ss_pred EecCCCCC
Confidence 99888655
No 151
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1.6e-12 Score=116.17 Aligned_cols=79 Identities=14% Similarity=0.130 Sum_probs=70.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEE-eeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecC
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVE-VGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSA 80 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~-i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea 80 (890)
..+|||||||+++|+++|+++|++| |+|.+++ |+.|+.. |.|||+|.+.++|++|+..+| |..++|+.|+|+.|
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~---G~v~~~~~i~~~~~~-~~afV~f~~~~~a~~Ai~~l~-g~~~~g~~l~V~~a 89 (96)
T 2e44_A 15 IRKLQIRNIPPHLQWEVLDSLLVQY---GVVESCEQVNTDSET-AVVNVTYSSKDQARQALDKLN-GFQLENFTLKVAYI 89 (96)
T ss_dssp CCCEEEEEECSSSCHHHHHHHHHHH---SCEEEEEEECCSSSS-EEEEEEESSHHHHHHHHHHHT-TCBCSSCBCEEEEC
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHhc---CCeEEEEEeecCCCC-CEEEEEECCHHHHHHHHHHhC-CCEECCcEEEEEEc
Confidence 3679999999999999999999999 9999994 8888732 339999999999999999888 79999999999999
Q ss_pred CCCCC
Q 035741 81 KRRTP 85 (890)
Q Consensus 81 ~~di~ 85 (890)
.++-.
T Consensus 90 ~~~~~ 94 (96)
T 2e44_A 90 PDEMA 94 (96)
T ss_dssp CCCCS
T ss_pred Ccccc
Confidence 87643
No 152
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.36 E-value=1.2e-12 Score=134.11 Aligned_cols=77 Identities=18% Similarity=0.141 Sum_probs=71.5
Q ss_pred CceEEEeCCC-CCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecC
Q 035741 2 AKMIMLYGFA-SLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSA 80 (890)
Q Consensus 2 ~kti~Vgnlp-~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea 80 (890)
+.|||||||| +++|+++|+++|++| |.|.+|+|+.+ +||||||+|++.++|++|+..+| |..+.|+.|+|+.|
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~---G~v~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~ln-g~~~~g~~l~v~~s 77 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLY---GNVEKVKFMKS--KPGAAMVEMADGYAVDRAITHLN-NNFMFGQKMNVCVS 77 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTT---SCEEEEEECTT--STTCEEEEESSHHHHHHHHHHHT-TCEETTEECEEEEC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhc---CCeEEEEEecC--CCCEEEEEECCHHHHHHHHHHhC-CCEECCceEEEEEc
Confidence 4689999999 899999999999999 99999999865 58999999999999999999998 89999999999999
Q ss_pred CCCC
Q 035741 81 KRRT 84 (890)
Q Consensus 81 ~~di 84 (890)
+..-
T Consensus 78 ~~~~ 81 (205)
T 3tyt_A 78 KQPA 81 (205)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7554
No 153
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.36 E-value=1.6e-12 Score=125.01 Aligned_cols=79 Identities=11% Similarity=0.151 Sum_probs=73.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
+.||||+|||+++|+++|+++|++| |.|.+++++.++ ++||||||+|.+.++|++|+..+| |..++|+.|+|.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~---G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~-~~~~~g~~l~v~ 77 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSI---GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLN-GLRLQTKTIKVS 77 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTT---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-TCEETTEECEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhc---CCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcC-CCccCCceEEEE
Confidence 3579999999999999999999999 999999999998 689999999999999999999888 799999999999
Q ss_pred cCCCCC
Q 035741 79 SAKRRT 84 (890)
Q Consensus 79 ea~~di 84 (890)
.+.+..
T Consensus 78 ~~~~~~ 83 (167)
T 1fxl_A 78 YARPSS 83 (167)
T ss_dssp ECCCCC
T ss_pred ecCCCc
Confidence 877544
No 154
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.36 E-value=1.1e-12 Score=114.73 Aligned_cols=73 Identities=16% Similarity=0.262 Sum_probs=64.6
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhcc---C-----CceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCc
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHT---G-----EGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNS 73 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~---~-----~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr 73 (890)
++||||||||+++|+++|+++|++|. | .++|.++++. ++||||||+|.+.++|++|+ .+| |..++|+
T Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~---~~kg~afV~f~~~~~a~~A~-~l~-g~~~~g~ 80 (87)
T 2hzc_A 6 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFD-GIIFQGQ 80 (87)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC---SSSSEEEEEESSHHHHHHHG-GGT-TCEETTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec---CCCcEEEEEcCCHHHHHHHH-hcC-CCEECCe
Confidence 57899999999999999999999992 2 1289999988 45899999999999999999 777 8999999
Q ss_pred eeEEec
Q 035741 74 FLKASS 79 (890)
Q Consensus 74 ~L~v~e 79 (890)
.|+|+.
T Consensus 81 ~l~V~r 86 (87)
T 2hzc_A 81 SLKIRR 86 (87)
T ss_dssp ECEEEC
T ss_pred EEEEeC
Confidence 999973
No 155
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.36 E-value=6.3e-13 Score=128.51 Aligned_cols=76 Identities=21% Similarity=0.368 Sum_probs=71.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
.+|||+|||+++|+++|+++|++| |+|.+++|..|+ ++||||||+|.+.++|++|+. ++ +..++|+.|+|..
T Consensus 88 ~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~-~~~~~g~~i~V~~ 162 (167)
T 2cjk_A 88 GKIFVGGIGPDVRPKEFEEFFSQW---GTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NK-FIDFKDRKIEIKR 162 (167)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHTT---SCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CS-EECSSSSCEEEEE
T ss_pred CeEEECCCCCCCCHHHHHHHHHhC---ccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CC-CEEeCCeEEEEee
Confidence 579999999999999999999999 999999999997 699999999999999999998 44 8999999999999
Q ss_pred CCCC
Q 035741 80 AKRR 83 (890)
Q Consensus 80 a~~d 83 (890)
|.++
T Consensus 163 a~pk 166 (167)
T 2cjk_A 163 AEPR 166 (167)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8765
No 156
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.36 E-value=1.7e-12 Score=128.70 Aligned_cols=79 Identities=19% Similarity=0.290 Sum_probs=71.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
+.+|||||||+++|+++|+++|++| |.|.+|+|+.|+ ++||||||+|.+.++|++|+.+ + +..++|+.|+|.
T Consensus 13 ~~~l~V~nLp~~~te~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~-~~~~~g~~l~v~ 87 (196)
T 1l3k_A 13 LRKLFIGGLSFETTDESLRSHFEQW---GTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-R-PHKVDGRVVEPK 87 (196)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-C-SCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC---CCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-C-CCEECCEEeeee
Confidence 4689999999999999999999999 999999999997 5999999999999999999988 4 799999999999
Q ss_pred cCCCCCC
Q 035741 79 SAKRRTP 85 (890)
Q Consensus 79 ea~~di~ 85 (890)
.+.+...
T Consensus 88 ~~~~~~~ 94 (196)
T 1l3k_A 88 RAVSRED 94 (196)
T ss_dssp ECCC---
T ss_pred cccCccc
Confidence 9876653
No 157
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.36 E-value=1.1e-12 Score=122.16 Aligned_cols=75 Identities=16% Similarity=0.265 Sum_probs=67.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCce-----eE
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSF-----LK 76 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~-----L~ 76 (890)
+.+|||+|||+++|+++|+++|++| |+|..|+|+.| |||||+|++.++|++|+..+| +..++|+. ++
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~-g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREA---GDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLD-NTKFRSHEGETAYIR 87 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGG---SCEEEEEECTT----SEEEEEESSHHHHHHHHHHHT-TCBCCCTTSCCCBCE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEecC----CEEEEEECCHHHHHHHHHHhC-CCEECCcEeeeEEEE
Confidence 3679999999999999999999999 99999999977 999999999999999999998 79999988 88
Q ss_pred EecCCCCC
Q 035741 77 ASSAKRRT 84 (890)
Q Consensus 77 v~ea~~di 84 (890)
|.++.++-
T Consensus 88 v~~~~~~~ 95 (115)
T 3beg_B 88 VKVDGPRS 95 (115)
T ss_dssp EEECC---
T ss_pred eccCCCCC
Confidence 88877655
No 158
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=3.9e-13 Score=118.60 Aligned_cols=74 Identities=20% Similarity=0.228 Sum_probs=65.4
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHh-cCccccCceeEEecC
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLAR-ERLSYGNSFLKASSA 80 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~-~~~~~~gr~L~v~ea 80 (890)
++||||||||+++|+++|+++|++| |+|.+|+|+.+ +||||||+|++.++|++| + ..+.+.|+.|+|..|
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~---G~i~~v~i~~~--~~g~afV~f~~~~~a~~~----~~~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQY---GDVMDVFIPKP--FRAFAFVTFADDQIAQSL----CGEDLIIKGISVHISNA 75 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTT---SCCCEEECCSS--CCSCCEEECSCHHHHHHT----TTCEEEETTEEEEEECC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHc---CCeeEEEEecC--CCCEEEEEECCHHHHHHH----hcCCceeCCEEEEEEec
Confidence 5789999999999999999999999 99999999865 899999999999988753 3 235679999999998
Q ss_pred CCCC
Q 035741 81 KRRT 84 (890)
Q Consensus 81 ~~di 84 (890)
.++-
T Consensus 76 ~~~~ 79 (88)
T 1wf0_A 76 EPKH 79 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7765
No 159
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.36 E-value=1.4e-12 Score=125.90 Aligned_cols=79 Identities=14% Similarity=0.130 Sum_probs=73.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
+.+|||+|||+++|+++|+++|++| |.|.+++|+.++ ++||||||+|.+.++|++|++.++ |..++|+.|+|.
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~-~~~~~g~~l~v~ 78 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAI---GPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLN-GITVRNKRLKVS 78 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTT---SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT-TCEETTEECEEE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhc---CCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcC-CCEeCCcEEEEE
Confidence 3689999999999999999999999 999999999987 599999999999999999999887 799999999999
Q ss_pred cCCCCC
Q 035741 79 SAKRRT 84 (890)
Q Consensus 79 ea~~di 84 (890)
.+.++.
T Consensus 79 ~~~~~~ 84 (168)
T 1b7f_A 79 YARPGG 84 (168)
T ss_dssp ECCCCS
T ss_pred ecCCCc
Confidence 887654
No 160
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.35 E-value=9.4e-13 Score=132.28 Aligned_cols=81 Identities=14% Similarity=0.099 Sum_probs=76.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
+.+|||+|||+.+|+++|+++|++| |.|.+|+|..|+ ++||||||+|.+.++|++|+..+| +..++|+.|+|..
T Consensus 88 ~~~l~V~nLp~~~te~~L~~~F~~~---G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~ln-g~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 88 GAKLLVSNLDFGVSDADIQELFAEF---GTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYK-GVPLDGRPMDIQL 163 (177)
T ss_dssp CEEEEEECCCSCCCHHHHHHHHHHT---SCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHST-TCBCSSSBCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhC-CCEECCEEEEEEE
Confidence 3689999999999999999999999 999999999998 799999999999999999999988 7999999999999
Q ss_pred CCCCCCC
Q 035741 80 AKRRTPH 86 (890)
Q Consensus 80 a~~di~p 86 (890)
|.+...+
T Consensus 164 a~~~~~~ 170 (177)
T 2f3j_A 164 VASQIDL 170 (177)
T ss_dssp ESSGGGG
T ss_pred ecCCCCC
Confidence 9877755
No 161
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.35 E-value=1.8e-12 Score=124.41 Aligned_cols=77 Identities=12% Similarity=0.075 Sum_probs=72.3
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
..+|+|+|||+++|+++|+++|++| |.|.+++|..|+ ++||||||+|.+.++|.+|+..+| |..++|+.|+|+
T Consensus 87 ~~~l~v~nl~~~~t~~~l~~~f~~~---G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~i~v~ 162 (166)
T 3md3_A 87 TFNLFVGDLNVNVDDETLRNAFKDF---PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ-GQDLNGRPLRIN 162 (166)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHTTS---TTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHT-TCEETTEECEEE
T ss_pred CceEEECCCCCCCCHHHHHHHHhcc---CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC-CCccCCcEEEEE
Confidence 3579999999999999999999999 999999999996 699999999999999999999998 799999999999
Q ss_pred cCCC
Q 035741 79 SAKR 82 (890)
Q Consensus 79 ea~~ 82 (890)
-|++
T Consensus 163 ~a~~ 166 (166)
T 3md3_A 163 WAAK 166 (166)
T ss_dssp ESCC
T ss_pred ecCC
Confidence 8864
No 162
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.35 E-value=2e-12 Score=124.38 Aligned_cols=77 Identities=13% Similarity=0.114 Sum_probs=69.9
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCce-EEEEecCHHHHHHHHHHHhcCccccC--ceeEEecC
Q 035741 4 MIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAH-AIVEFTTVEAADFIKCLARERLSYGN--SFLKASSA 80 (890)
Q Consensus 4 ti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgf-gfVem~~~~~a~~a~~~~~~~~~~~g--r~L~v~ea 80 (890)
.|||+|||+.+|+++|+++|++| |+|.+|.|.. ++||| |||||++.++|++|+..+| |..+.| +.|+|..|
T Consensus 30 ~I~V~NL~~~vte~~L~~lFs~y---G~V~~V~i~~--~~~gfqAFVef~~~~~A~~Ai~~Ln-G~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQIFSKF---GTVLKIITFT--KNNQFQALLQYADPVSAQHAKLSLD-GQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTS---SCEEEEEEEE--ETTEEEEEEEESCHHHHHHHHHHHT-TCEEETTEEEEEEEEC
T ss_pred EEEECCCCCCCCHHHHHHHHhCc---CCEEEEEEEc--CCCCcEEEEEECCHHHHHHHHHHcC-CCeecCCCcEEEEEec
Confidence 58999999999999999999999 9999998875 45799 9999999999999999998 787766 99999999
Q ss_pred CCCCCC
Q 035741 81 KRRTPH 86 (890)
Q Consensus 81 ~~di~p 86 (890)
+++-+.
T Consensus 104 k~~~l~ 109 (130)
T 3zzy_A 104 KLTSLN 109 (130)
T ss_dssp SCSSCC
T ss_pred CCCcee
Confidence 877654
No 163
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.35 E-value=3e-12 Score=122.23 Aligned_cols=75 Identities=16% Similarity=0.099 Sum_probs=67.3
Q ss_pred EEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCce-EEEEecCHHHHHHHHHHHhcCccccC--ceeEEecCC
Q 035741 5 IMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAH-AIVEFTTVEAADFIKCLARERLSYGN--SFLKASSAK 81 (890)
Q Consensus 5 i~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgf-gfVem~~~~~a~~a~~~~~~~~~~~g--r~L~v~ea~ 81 (890)
|||||||+.+|+++|+++|++| |+|..|.|+. + +|| |||||++.++|++|+..|| |..+.| +.|+|+.|+
T Consensus 28 l~V~NL~~~vt~~~L~~~Fs~y---G~V~~v~i~~-~--~Gf~aFVef~~~~~A~~A~~~Ln-G~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 28 LSIQNPLYPITVDVLYTVCNPV---GKVQRIVIFK-R--NGIQAMVEFESVLCAQKAKAALN-GADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEESCCSCCCHHHHHHHHTTT---SCEEEEEEEE-S--SSEEEEEEESSHHHHHHHHHHHT-TCCCBTTBSEEEEECCS
T ss_pred EEEcCcCCCCCHHHHHHHHHhc---CCEEEEEEEe-C--CCCEEEEEECCHHHHHHHHHHhC-CCEecCCCeEEEEEEec
Confidence 7899999999999999999999 9999999975 3 397 9999999999999999998 787766 799999998
Q ss_pred CCCCC
Q 035741 82 RRTPH 86 (890)
Q Consensus 82 ~di~p 86 (890)
++-+.
T Consensus 101 ~~~l~ 105 (124)
T 2e5i_A 101 PTRLN 105 (124)
T ss_dssp CSCCC
T ss_pred CCcce
Confidence 77543
No 164
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.35 E-value=8.9e-13 Score=126.64 Aligned_cols=79 Identities=13% Similarity=0.010 Sum_probs=69.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEE--------EeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCc
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGV--------EVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNS 73 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~--------~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr 73 (890)
+.+|||||||+++|+++|+++|++| |+|.++ .+....++||||||+|.+.++|++|+..+| |..++|+
T Consensus 45 ~~~l~V~nLp~~~te~~L~~~F~~~---G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~ln-g~~~~g~ 120 (143)
T 3egn_A 45 NCRIYVKNLAKHVQEKDLKYIFGRY---VDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEAN-GYVLFGK 120 (143)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHGGG---CCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHT-TBEETTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHh---CCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhC-CCEeCCc
Confidence 3589999999999999999999999 999875 222333799999999999999999999998 8999999
Q ss_pred eeEEecCCCCC
Q 035741 74 FLKASSAKRRT 84 (890)
Q Consensus 74 ~L~v~ea~~di 84 (890)
.|+|..|++.-
T Consensus 121 ~l~V~~a~~~~ 131 (143)
T 3egn_A 121 PMVVQFARSAR 131 (143)
T ss_dssp ECEEEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999997654
No 165
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.33 E-value=2e-12 Score=125.57 Aligned_cols=75 Identities=19% Similarity=0.288 Sum_probs=71.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
..+|||+|||+++|+++|+++|++| |+|.+++|..++ ++||||||+|++.++|++|+..+| |..++|+.|+|+
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~---G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~V~ 169 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSF---GPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLN-GMQLGDKKLLVQ 169 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTT---SCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHT-TCEETTEECEEE
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhc---CCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CCEECCeEEEEE
Confidence 3689999999999999999999999 999999999997 689999999999999999999998 899999999998
Q ss_pred cC
Q 035741 79 SA 80 (890)
Q Consensus 79 ea 80 (890)
.|
T Consensus 170 ~A 171 (172)
T 2g4b_A 170 RA 171 (172)
T ss_dssp EC
T ss_pred eC
Confidence 76
No 166
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=4.2e-12 Score=114.04 Aligned_cols=74 Identities=18% Similarity=0.281 Sum_probs=69.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCC
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAK 81 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~ 81 (890)
..||||+|+ ++|+++|+++|++| |+|.+|+|. ++||||||+|.+.++|++|+..+| +..++|+.|+|..|+
T Consensus 15 ~~~l~V~n~--~~t~~~l~~~F~~~---G~i~~v~i~---~~~g~afV~f~~~~~a~~Ai~~l~-g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 15 GNTLYVYGE--DMTPTLLRGAFSPF---GNIIDLSMD---PPRNCAFVTYEKMESADQAVAELN-GTQVESVQLKVNIAR 85 (97)
T ss_dssp CSEEEEECS--SCCHHHHHHHHTTT---SCEEEEEEE---TTTTEEEEEESSHHHHHHHHHHTT-TEEETTEEEEEECCS
T ss_pred CCEEEEcCC--CCCHHHHHHHHhhC---CCEEEEEec---CCCCEEEEEECCHHHHHHHHHHhC-CCeECCeEEEEEECC
Confidence 568999995 99999999999999 999999996 799999999999999999999998 799999999999997
Q ss_pred CCC
Q 035741 82 RRT 84 (890)
Q Consensus 82 ~di 84 (890)
++-
T Consensus 86 ~~~ 88 (97)
T 1x5p_A 86 KQP 88 (97)
T ss_dssp SCC
T ss_pred CCC
Confidence 765
No 167
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.3e-12 Score=121.28 Aligned_cols=73 Identities=8% Similarity=0.108 Sum_probs=64.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC------CCCceEEEEecCHHHHHHHHHHHhcCccccCce
Q 035741 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK------GSRAHAIVEFTTVEAADFIKCLARERLSYGNSF 74 (890)
Q Consensus 1 M~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr------~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~ 74 (890)
+++||||||||+++|+++|+++|++| |.|. +.++.++ ++||||||+|++.++|++|+..++ .+.|+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~---G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~---~~~G~~ 79 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRF---GPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL---EEDGKL 79 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTT---CCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE---EETTEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhc---CCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh---hcCCcE
Confidence 35789999999999999999999999 9999 8888886 579999999999999999999874 267787
Q ss_pred eEEecC
Q 035741 75 LKASSA 80 (890)
Q Consensus 75 L~v~ea 80 (890)
|.++.+
T Consensus 80 ~~~~~~ 85 (114)
T 2dnl_A 80 YLCVSS 85 (114)
T ss_dssp EEEECC
T ss_pred EEeccC
Confidence 877754
No 168
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.31 E-value=3.2e-12 Score=126.74 Aligned_cols=79 Identities=16% Similarity=0.264 Sum_probs=70.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
++|||+|||+++|+++|+++|++| |+|.+|+|..|+ ++||||||+|++.++|.+|+.. + +..++|+.|+|..
T Consensus 105 ~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~-~~~~~G~~i~v~~ 179 (196)
T 1l3k_A 105 KKIFVGGIKEDTEEHHLRDYFEQY---GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-K-YHTVNGHNCEVRK 179 (196)
T ss_dssp SEEEEECCTTTCCHHHHHHHHTTT---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-S-CCEETTEECEEEE
T ss_pred ceEEEeCCCCCCCHHHHHHHHhcC---CCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-C-CcEECCEEEEEEe
Confidence 689999999999999999999999 999999999997 6999999999999999999987 5 7999999999999
Q ss_pred CCCCCCC
Q 035741 80 AKRRTPH 86 (890)
Q Consensus 80 a~~di~p 86 (890)
|.++--.
T Consensus 180 a~~k~~~ 186 (196)
T 1l3k_A 180 ALSKQEM 186 (196)
T ss_dssp CC-----
T ss_pred cCChhHh
Confidence 9877633
No 169
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.31 E-value=4.9e-12 Score=127.33 Aligned_cols=78 Identities=12% Similarity=0.191 Sum_probs=70.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
+.||||+|||+++|+++|+++|++| |.|.+|+|+.|+ ++||||||+|.+.++|++|++.+| +..++|+.|+|.
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~-~~~~~g~~l~v~ 103 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPF---GPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMN-SVMLGGRNIKVG 103 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGG---SCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHS-SCCCC-CCCEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhC---CCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHcc-CCeeCCeeEEEe
Confidence 4689999999999999999999999 999999999987 699999999999999999999887 799999999998
Q ss_pred cCCCC
Q 035741 79 SAKRR 83 (890)
Q Consensus 79 ea~~d 83 (890)
.+...
T Consensus 104 ~~~~~ 108 (216)
T 2qfj_A 104 RPSNI 108 (216)
T ss_dssp CCSCC
T ss_pred cCCCc
Confidence 75543
No 170
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.31 E-value=3.8e-12 Score=126.43 Aligned_cols=79 Identities=18% Similarity=0.264 Sum_probs=74.3
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
..+|||+|||+++|+++|+++|++| |.|.+++|..++ ++||||||+|.+.++|++|+..+| |..++|+.|+|.
T Consensus 114 ~~~l~v~nl~~~~~~~~l~~~f~~~---G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~v~ 189 (198)
T 2yh0_A 114 AHKLFIGGLPNYLNDDQVKELLTSF---GPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLN-GMQLGDKKLLVQ 189 (198)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTB---SCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHT-TCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHc---CCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcC-CCEECCEEEEEE
Confidence 3689999999999999999999999 999999999997 689999999999999999999998 799999999999
Q ss_pred cCCCCC
Q 035741 79 SAKRRT 84 (890)
Q Consensus 79 ea~~di 84 (890)
.|+++-
T Consensus 190 ~a~~~~ 195 (198)
T 2yh0_A 190 RASVGA 195 (198)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 998764
No 171
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.30 E-value=3.2e-12 Score=129.97 Aligned_cols=76 Identities=20% Similarity=0.298 Sum_probs=69.7
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
.+||||+|||+++|+++|+++|++| |+|.+|.|..++ ++||||||+|++.++|++|+...+ ..++||.|+|..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~---G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~--~~~~Gr~l~V~~ 183 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDK---GQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG--QKYKETDLLILF 183 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTS---CCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT--CEETTEECEEEE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcC---CCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC--CeECCEEEEEEE
Confidence 3689999999999999999999999 999999999988 699999999999999999998754 589999999997
Q ss_pred CCC
Q 035741 80 AKR 82 (890)
Q Consensus 80 a~~ 82 (890)
+++
T Consensus 184 ~~~ 186 (193)
T 2voo_A 184 KDD 186 (193)
T ss_dssp TTT
T ss_pred hHH
Confidence 654
No 172
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.29 E-value=9.5e-12 Score=114.98 Aligned_cols=79 Identities=19% Similarity=0.130 Sum_probs=70.9
Q ss_pred CCceEEEeCCCC-----CCCHHHHHHHHhhccCCceEEEEEeeecC----CCCceEEEEecCHHHHHHHHHHHhcCcccc
Q 035741 1 MAKMIMLYGFAS-----LASPKAVKEFLEEHTGEGTVSGVEVGQNK----GSRAHAIVEFTTVEAADFIKCLARERLSYG 71 (890)
Q Consensus 1 M~kti~Vgnlp~-----~~t~~~l~~~f~~~~~~G~V~s~~i~~dr----~sRgfgfVem~~~~~a~~a~~~~~~~~~~~ 71 (890)
.+++|+|.|+.. ..++++|++.|++| |+|.+|.|..|+ +|||||||+|++.++|++|+..+| |..|+
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~---G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~ln-G~~~~ 82 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKY---GKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLN-GRYFG 82 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGG---SCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHT-TCEET
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhc---CCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHC-CCEEC
Confidence 368899999984 34899999999999 999999999986 589999999999999999999998 89999
Q ss_pred CceeEEecCCCC
Q 035741 72 NSFLKASSAKRR 83 (890)
Q Consensus 72 gr~L~v~ea~~d 83 (890)
||.|+|+.|+++
T Consensus 83 Gr~i~v~~a~~~ 94 (105)
T 2pe8_A 83 GRVVKACFYNLD 94 (105)
T ss_dssp TEECEEEECCHH
T ss_pred CcEEEEEEcCHH
Confidence 999999998653
No 173
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.28 E-value=7.7e-12 Score=121.34 Aligned_cols=76 Identities=14% Similarity=0.146 Sum_probs=68.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCcccc--CceeEEe
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYG--NSFLKAS 78 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~--gr~L~v~ 78 (890)
.+|||+|||+++|+++|+++|++| |+|.+++|..++ ++||||||+|++.++|.+|+..+|+...++ |+.|+|.
T Consensus 96 ~~l~v~nl~~~~t~~~l~~~F~~~---G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 96 RKLFIGMISKKCTENDIRVMFSSF---GQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp SEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CeEEEcCCCCcCCHHHHHHHHHhC---CCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 579999999999999999999999 999999999998 689999999999999999999998433444 4999998
Q ss_pred cCC
Q 035741 79 SAK 81 (890)
Q Consensus 79 ea~ 81 (890)
-|+
T Consensus 173 ~ad 175 (175)
T 3nmr_A 173 FAD 175 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 764
No 174
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.28 E-value=8.6e-12 Score=121.00 Aligned_cols=79 Identities=19% Similarity=0.184 Sum_probs=69.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC-----CCCceEEEEecCHHHHHHHHHHHhcCcccc---Cc
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK-----GSRAHAIVEFTTVEAADFIKCLARERLSYG---NS 73 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr-----~sRgfgfVem~~~~~a~~a~~~~~~~~~~~---gr 73 (890)
+.||||||||+++|+++|+++|++| |.|.+++|+.++ ++||||||+|.+.++|++|+..+| +..+. ++
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~---G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-~~~~~~~~~~ 78 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQY---GAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALH-NMKVLPGMHH 78 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTT---SCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHT-TTCCCTTCSS
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhC---CCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhc-CcEEccCCcc
Confidence 4689999999999999999999999 999999999998 489999999999999999999998 45443 67
Q ss_pred eeEEecCCCCC
Q 035741 74 FLKASSAKRRT 84 (890)
Q Consensus 74 ~L~v~ea~~di 84 (890)
.+.+..+.+.-
T Consensus 79 ~~~~~~~~~~~ 89 (175)
T 3nmr_A 79 PIQMKPADSEK 89 (175)
T ss_dssp CCEEEECGGGC
T ss_pred ceEEccccccc
Confidence 78887765443
No 175
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.28 E-value=5.5e-12 Score=143.46 Aligned_cols=80 Identities=13% Similarity=0.100 Sum_probs=75.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
+||||||||+.+|+++|+++|++| |+|..|+|+.|+ +++|||||+|.+.++|++|+..+| |..++|+.|+|..
T Consensus 103 ~~lfV~nL~~~~te~~L~~~F~~~---G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ln-g~~i~gr~i~V~~ 178 (437)
T 3pgw_S 103 KTLFVARVNYDTTESKLRREFEVY---GPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHAD-GKKIDGRRVLVDV 178 (437)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHc---CCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcC-CCEECCEEEEEEE
Confidence 689999999999999999999999 999999999997 699999999999999999999998 8999999999999
Q ss_pred CCCCCCC
Q 035741 80 AKRRTPH 86 (890)
Q Consensus 80 a~~di~p 86 (890)
|.+....
T Consensus 179 a~~~~~~ 185 (437)
T 3pgw_S 179 ERGRTVK 185 (437)
T ss_pred eCCCCCC
Confidence 9887654
No 176
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.27 E-value=5.2e-12 Score=122.06 Aligned_cols=75 Identities=13% Similarity=0.232 Sum_probs=68.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
+.+|||||||+++|+++|+++|++| |.|.+|+|+.|+ ++||||||+|.+.++|++|+.. +..++|+.|+|.
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~---~~~~~g~~i~v~ 76 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKY---GTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT---QHILDGKVIDPK 76 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTT---CCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS---CCEETTEECCCE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhC---CCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc---ccccCCeEcccc
Confidence 4689999999999999999999999 999999999997 6999999999999999999884 578999999998
Q ss_pred cCCC
Q 035741 79 SAKR 82 (890)
Q Consensus 79 ea~~ 82 (890)
.+.+
T Consensus 77 ~~~~ 80 (167)
T 2cjk_A 77 RAIP 80 (167)
T ss_dssp ECCC
T ss_pred cccc
Confidence 7654
No 177
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.26 E-value=8.1e-12 Score=124.87 Aligned_cols=80 Identities=14% Similarity=0.223 Sum_probs=73.4
Q ss_pred CC-ceEEEeCCCC-CCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 1 MA-KMIMLYGFAS-LASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 1 M~-kti~Vgnlp~-~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
|+ ++|||+|||+ ++|+++|+++|++| |.|..|+|..++ ||||||+|.+.++|++|+..+| |..++|+.|+|.
T Consensus 1 m~~~~l~v~nlp~~~~~~~~l~~~F~~~---G~i~~v~i~~~~--~g~afV~f~~~~~a~~A~~~l~-~~~~~g~~l~v~ 74 (198)
T 1qm9_A 1 MGNSVLLVSNLNPERVTPQSLFILFGVY---GDVQRVKILFNK--KENALVQMADGNQAQLAMSHLN-GHKLHGKPIRIT 74 (198)
T ss_dssp CCCCEEEEECCCSSSCCHHHHHHHHHTT---CCCSEEECSTTC--SSCCEEECTTTHHHHHHHHHHT-TCCCSSCCCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhc---CCEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhC-CCeecCeEEEEE
Confidence 44 7799999999 99999999999999 999999999876 8999999999999999999887 799999999999
Q ss_pred cCCCCCCC
Q 035741 79 SAKRRTPH 86 (890)
Q Consensus 79 ea~~di~p 86 (890)
.++++-..
T Consensus 75 ~a~~~~~~ 82 (198)
T 1qm9_A 75 LSKHQNVQ 82 (198)
T ss_dssp ECCCCSCC
T ss_pred EecCCCcC
Confidence 98766543
No 178
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.25 E-value=1.9e-11 Score=126.09 Aligned_cols=79 Identities=13% Similarity=0.204 Sum_probs=73.1
Q ss_pred CceEEEeCCCC-CCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecC
Q 035741 2 AKMIMLYGFAS-LASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSA 80 (890)
Q Consensus 2 ~kti~Vgnlp~-~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea 80 (890)
++||||+|||+ ++|+++|+++|++| |.|.+|+|+.++ ||||||+|.+.++|++|++.+| |..++|+.|+|..|
T Consensus 34 ~~~l~V~nLp~~~~te~~L~~~F~~~---G~i~~v~i~~~~--~g~afV~F~~~~~A~~Ai~~l~-g~~~~g~~l~v~~a 107 (229)
T 2adc_A 34 NSVLLVSNLNPERVTPQSLFILFGVY---GDVQRVKILFNK--KENALVQMADGNQAQLAMSHLN-GHKLHGKPIRITLS 107 (229)
T ss_dssp CSEEEEESCCTTTCCHHHHHHHHHHH---TCEEEEEECCTT--SCCEEEEESCHHHHHHHHHHHT-TCBCSSSBCEEECC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhC---CCeEEEEEEECC--CCEEEEEECCHHHHHHHHHHhC-CCeECCeEEEEEEe
Confidence 46899999999 99999999999999 999999999887 8999999999999999999887 79999999999999
Q ss_pred CCCCCC
Q 035741 81 KRRTPH 86 (890)
Q Consensus 81 ~~di~p 86 (890)
++.-..
T Consensus 108 ~~~~~~ 113 (229)
T 2adc_A 108 KHQNVQ 113 (229)
T ss_dssp SCCCCC
T ss_pred cCcccc
Confidence 766543
No 179
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=1.8e-11 Score=111.64 Aligned_cols=69 Identities=14% Similarity=0.205 Sum_probs=62.8
Q ss_pred ce-EEEeCCCCCCCHHHHH----HHHhhccCCc-eEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeE
Q 035741 3 KM-IMLYGFASLASPKAVK----EFLEEHTGEG-TVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLK 76 (890)
Q Consensus 3 kt-i~Vgnlp~~~t~~~l~----~~f~~~~~~G-~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~ 76 (890)
.| |||+|||+.+++++|+ ++|++| | .|..| ..|||||+|.+.++|+.|+..+| |.++.||.++
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~y---GG~Vl~V-------tgG~AfV~F~~~esA~~A~~~l~-G~~l~gr~i~ 77 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNC---GGKVLSI-------TGCSAILRFINQDSAERAQKRME-NEDVFGNRII 77 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTT---TCCEEEC-------CTTCEEEEESSHHHHHHHHHHHT-TCCSSSSCCE
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHc---CCeeEEE-------ecCEEEEEECCHHHHHHHHHHhc-CCccCCceEE
Confidence 46 9999999999999855 899999 8 99988 23999999999999999999998 8999999999
Q ss_pred EecCCC
Q 035741 77 ASSAKR 82 (890)
Q Consensus 77 v~ea~~ 82 (890)
|+.|+.
T Consensus 78 v~~A~~ 83 (96)
T 2diu_A 78 VSFTPK 83 (96)
T ss_dssp EESSCC
T ss_pred EEecCC
Confidence 999954
No 180
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.24 E-value=1.6e-11 Score=118.50 Aligned_cols=75 Identities=12% Similarity=0.127 Sum_probs=69.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccC--ceeE
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGN--SFLK 76 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~g--r~L~ 76 (890)
..+|+|+|||+++|+++|+++|++| |.|..++|..++ ++||||||+|.+.++|.+|+..+| |..+.| +.|+
T Consensus 89 ~~~l~v~nl~~~~t~~~l~~~f~~~---G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~~~l~ 164 (168)
T 1b7f_A 89 DTNLYVTNLPRTITDDQLDTIFGKY---GSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN-NVIPEGGSQPLS 164 (168)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHTSS---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-TCCCTTCSSCCE
T ss_pred CCCEEEeCCCCCCCHHHHHHhhhcC---CcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhc-CCEecCCCeEEE
Confidence 3689999999999999999999999 999999999987 689999999999999999999998 788877 9999
Q ss_pred EecC
Q 035741 77 ASSA 80 (890)
Q Consensus 77 v~ea 80 (890)
|+-|
T Consensus 165 V~~A 168 (168)
T 1b7f_A 165 VRLA 168 (168)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9754
No 181
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.24 E-value=1.3e-11 Score=116.40 Aligned_cols=74 Identities=18% Similarity=0.281 Sum_probs=68.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCC
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAK 81 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~ 81 (890)
+.||||||+ ++|+++|+++|++| |.|.+|+|. ++||||||+|++.++|++|+..+| |..++|+.|+|+.|+
T Consensus 39 ~~~lfVgnl--~~te~~L~~~F~~~---G~I~~v~i~---~~kg~aFV~f~~~~~A~~Ai~~ln-g~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 39 GNTLYVYGE--DMTPTLLRGAFSPF---GNIIDLSMD---PPRNCAFVTYEKMESADQAVAELN-GTQVESVQLKVNIAR 109 (121)
T ss_dssp CCEEEEECS--SCCHHHHHHHHSTT---CCCSCEEEE---TTTTEEEEECSSHHHHHHHHHHHT-TCBCSSCBCEEEECC
T ss_pred CCEEEEcCC--CCCHHHHHHHHHcc---CCEEEEEEe---CCCCEEEEEECCHHHHHHHHHHhC-CCEECCeEEEEEEeC
Confidence 578999995 79999999999999 999999997 799999999999999999999998 789999999999998
Q ss_pred CCC
Q 035741 82 RRT 84 (890)
Q Consensus 82 ~di 84 (890)
++-
T Consensus 110 ~~~ 112 (121)
T 2bz2_A 110 KQP 112 (121)
T ss_dssp SSC
T ss_pred CCC
Confidence 764
No 182
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.23 E-value=1.4e-11 Score=120.41 Aligned_cols=76 Identities=14% Similarity=0.118 Sum_probs=68.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCC
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAK 81 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~ 81 (890)
..+|||+|||+++|+++|+++|+++ |.|..+ ..+.++||||||+|.+.++|.+|+..+| |..++|+.|+|+-|.
T Consensus 99 ~~~l~v~nlp~~~t~~~l~~~F~~~---g~v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 99 ARTLLAKNLSFNITEDELKEVFEDA---LEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQ-GAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGEEEEESCCSSCCHHHHHHHCTTC---SEEEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHT-EEEETTEEEEEEECS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc---CeEEEe--cCCCCCceEEEEEECCHHHHHHHHHHhC-CCEECCeEEEEEecC
Confidence 3689999999999999999999999 999877 2333799999999999999999999998 799999999999987
Q ss_pred CC
Q 035741 82 RR 83 (890)
Q Consensus 82 ~d 83 (890)
++
T Consensus 173 ~k 174 (175)
T 1fje_B 173 EK 174 (175)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 183
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.23 E-value=4.3e-11 Score=116.13 Aligned_cols=78 Identities=15% Similarity=0.235 Sum_probs=65.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccC-Cc-------eEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCc
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTG-EG-------TVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNS 73 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~-~G-------~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr 73 (890)
+++|||||||+++|+++|+++|+++-. .| .|.++++. ++||||||+|.+.++|++|+ .+| |..++|+
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~---~~~g~afV~f~~~~~A~~A~-~~~-~~~~~g~ 78 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFD-GIIFQGQ 78 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE---TTTTEEEEEESSHHHHHHHG-GGT-TCEETTE
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec---CCCCEEEEEeCCHHHHHHHH-HhC-CcEecCc
Confidence 478999999999999999999999910 12 56666665 68999999999999999999 566 8999999
Q ss_pred eeEEecCCCCC
Q 035741 74 FLKASSAKRRT 84 (890)
Q Consensus 74 ~L~v~ea~~di 84 (890)
.|+|+.+.+.-
T Consensus 79 ~i~v~~~~~~~ 89 (172)
T 2g4b_A 79 SLKIRRPHDYQ 89 (172)
T ss_dssp ECEEECCSSCC
T ss_pred eeeecCCcccC
Confidence 99999865544
No 184
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.23 E-value=2.2e-11 Score=116.92 Aligned_cols=74 Identities=9% Similarity=0.095 Sum_probs=67.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCce--eE
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSF--LK 76 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~--L~ 76 (890)
..+|+|+|||+++|+++|+++|++| |.|..++|..++ ++||||||+|.+.++|++|+..+| |..++|+. |+
T Consensus 88 ~~~l~v~nl~~~~t~~~l~~~f~~~---G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~~~i~ 163 (167)
T 1fxl_A 88 DANLYVSGLPKTMTQKELEQLFSQY---GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN-GQKPSGATEPIT 163 (167)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-TCCCTTCSSCCE
T ss_pred CCcEEECCCCCcCCHHHHHHHHHhc---CCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhc-CCccCCCccceE
Confidence 3579999999999999999999999 999999999987 589999999999999999999998 78999986 66
Q ss_pred Eec
Q 035741 77 ASS 79 (890)
Q Consensus 77 v~e 79 (890)
|+-
T Consensus 164 v~~ 166 (167)
T 1fxl_A 164 VKF 166 (167)
T ss_dssp EEE
T ss_pred EEe
Confidence 654
No 185
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.21 E-value=2.5e-11 Score=128.10 Aligned_cols=79 Identities=15% Similarity=0.210 Sum_probs=72.8
Q ss_pred CceEEEeCCCCCCCHHHHH----HHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEE
Q 035741 2 AKMIMLYGFASLASPKAVK----EFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKA 77 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~----~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v 77 (890)
.+||||+|||+++|+++|+ ++|++| |.|.+|+|..+.++||||||+|.+.++|++|+..+| |..+.|+.|+|
T Consensus 9 ~~~l~V~nlp~~~~~~~l~~~L~~~F~~~---G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~v 84 (282)
T 3pgw_A 9 NHTIYINNLNEKIKKDELKKSLYAIFSQF---GQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQ-GFPFYDKPMRI 84 (282)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhcc---CCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhc-CCeeCCcEEEE
Confidence 4689999999999999977 899999 999999999877899999999999999999999988 79999999999
Q ss_pred ecCCCCC
Q 035741 78 SSAKRRT 84 (890)
Q Consensus 78 ~ea~~di 84 (890)
..|+.+-
T Consensus 85 ~~a~~~~ 91 (282)
T 3pgw_A 85 QYAKTDS 91 (282)
T ss_pred EEeccCc
Confidence 9886543
No 186
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.19 E-value=2.9e-11 Score=120.06 Aligned_cols=76 Identities=16% Similarity=0.225 Sum_probs=65.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhccCCce-----------EEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCcc
Q 035741 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGT-----------VSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLS 69 (890)
Q Consensus 1 M~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~-----------V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~ 69 (890)
|++||||||||+++|+++|+++|++| |+ |.++++. ++||||||+|.+.++|++|+ .+| |..
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~---g~i~g~~~~~~~~v~~~~~~---~~~g~afV~F~~~~~A~~Al-~l~-g~~ 74 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQ---MRLGGLTQAPGNPVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFD-GII 74 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHH---HHHHTCCSSSSCSEEEEEEE---TTTTEEEEEESCSHHHHHHG-GGT-TEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHH---HhhcccccCCCCceEEeEec---CCCCEEEEEeCCHHHHHHHH-Hhc-CCE
Confidence 57899999999999999999999999 64 4444443 78999999999999999999 566 899
Q ss_pred ccCceeEEecCCCCC
Q 035741 70 YGNSFLKASSAKRRT 84 (890)
Q Consensus 70 ~~gr~L~v~ea~~di 84 (890)
++|+.|+|+.+.+..
T Consensus 75 ~~g~~i~v~~~~~~~ 89 (198)
T 2yh0_A 75 FQGQSLKIRRPHDYQ 89 (198)
T ss_dssp ETTEEEEEECCCCCC
T ss_pred EcCceEEEeCCCCCC
Confidence 999999999887665
No 187
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.18 E-value=2.8e-11 Score=127.58 Aligned_cols=78 Identities=14% Similarity=0.148 Sum_probs=68.7
Q ss_pred CceEEEeCCCCCC---------CHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccc--
Q 035741 2 AKMIMLYGFASLA---------SPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSY-- 70 (890)
Q Consensus 2 ~kti~Vgnlp~~~---------t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~-- 70 (890)
.+||||||||..+ |+++|+++|++| |+|.+|+|+ .+||||||+|++.++|+.|+..++ |..+
T Consensus 134 ~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f---G~I~~v~v~---~~kG~AFV~F~~~~~Ae~A~~am~-g~~l~~ 206 (240)
T 3u1l_A 134 NKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL---GDIDRIRYV---ESKNCGFVKFKYQANAEFAKEAMS-NQTLLL 206 (240)
T ss_dssp CCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT---SCEEEEEEE---GGGTEEEEEESSHHHHHHHHHHHT-TCCCCC
T ss_pred CceeecCCCChhhhcccccccCcHHHHHHHHHcc---CCEEEEEEE---CCCCEEEEEeCCHHHHHHHHHHhC-CCEEec
Confidence 3689999999998 899999999999 999999999 478999999999999999999998 6777
Q ss_pred ----------cCceeEEecCCCCCCC
Q 035741 71 ----------GNSFLKASSAKRRTPH 86 (890)
Q Consensus 71 ----------~gr~L~v~ea~~di~p 86 (890)
.|+.|+|+-|+++--|
T Consensus 207 ~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 207 PSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp TTSTTGGGGGGSCCCEEEECC-----
T ss_pred cccccccccCCCCEEEEEEccCCCCH
Confidence 8999999999887533
No 188
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.17 E-value=1.1e-11 Score=120.99 Aligned_cols=77 Identities=14% Similarity=0.063 Sum_probs=67.4
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
..+|||||||+++|+++|+++|+++ |.|..+ ++.+. ++||||||+|.+.++|++|++ +| |..++|+.|+|.
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~---g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~-g~~~~g~~l~v~ 86 (175)
T 1fje_B 13 PFNLFIGNLNPNKSVAELKVAISEL---FAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKALE-LT-GLKVFGNEIKLE 86 (175)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHH---HHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHHH-GG-GEEETTEEEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHh---CCcceE-EEEECCCCccccEEEEEECCHHHHHHHHh-cC-CCEeCCeEEEEe
Confidence 4689999999999999999999999 988883 34443 799999999999999999996 66 799999999999
Q ss_pred cCCCCC
Q 035741 79 SAKRRT 84 (890)
Q Consensus 79 ea~~di 84 (890)
.+.+.-
T Consensus 87 ~~~~~~ 92 (175)
T 1fje_B 87 KPKGRD 92 (175)
T ss_dssp CCCCSS
T ss_pred cCCCcc
Confidence 887643
No 189
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=4.6e-11 Score=110.60 Aligned_cols=78 Identities=13% Similarity=0.169 Sum_probs=69.1
Q ss_pred CceEEEeCCCCCCC-----------HHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccc
Q 035741 2 AKMIMLYGFASLAS-----------PKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSY 70 (890)
Q Consensus 2 ~kti~Vgnlp~~~t-----------~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~ 70 (890)
+++|+|.|+..... +++|+++|++| |+|..|.| .|+.+||||||+|.+.++|++|+..+| |..+
T Consensus 15 s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~---G~v~~v~i-~~~~~~G~afV~f~~~~~A~~Ai~~ln-g~~~ 89 (112)
T 2dit_A 15 ERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF---GQIRKLLL-FDRHPDGVASVSFRDPEEADYCIQTLD-GRWF 89 (112)
T ss_dssp CCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT---SCCSEEEE-ETTCTTCEEEEECSCHHHHHHHHHHST-TCEE
T ss_pred ceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHcc---CCEeEEEE-ecCCCCEEEEEEECCHHHHHHHHHHcC-CCEE
Confidence 57899999954432 68999999999 99999955 778899999999999999999999998 7999
Q ss_pred cCceeEEecCCCCC
Q 035741 71 GNSFLKASSAKRRT 84 (890)
Q Consensus 71 ~gr~L~v~ea~~di 84 (890)
+||.|+|+.|.++.
T Consensus 90 ~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 90 GGRQITAQAWDGTT 103 (112)
T ss_dssp TTEECEEEECCSCC
T ss_pred CCcEEEEEEeCCCC
Confidence 99999999987654
No 190
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.16 E-value=8.9e-11 Score=123.95 Aligned_cols=93 Identities=11% Similarity=0.061 Sum_probs=80.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
.+|||+|||+++|+++|+++|++| |.|.+++|+.|+ ++||||||+|.+.++|.+|+..++ |..++|+.|+|..
T Consensus 96 ~~l~v~nlp~~~t~~~l~~~f~~~---G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-~~~~~g~~i~v~~ 171 (284)
T 3smz_A 96 ALLCVANLPPSLTQQQFEELVRPF---GSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLL-GKPLGPRTLYVHW 171 (284)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-TCEETTEECEEEE
T ss_pred CEEEEcCCCCcCCHHHHHHHHHhc---CCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhC-CCEeCCcEEEEEE
Confidence 579999999999999999999999 999999999987 699999999999999999998888 7999999999999
Q ss_pred CCCCCCCCCCCCccccccCCcEEEEee
Q 035741 80 AKRRTPHFAKRTPHYKLGGDLKLNFGC 106 (890)
Q Consensus 80 a~~di~p~rp~~~~~~~~~~~~~~~g~ 106 (890)
|.+.-.+ + .... ..+|+++.
T Consensus 172 a~~~~~~--~----~~~~-~~~l~v~n 191 (284)
T 3smz_A 172 TDAGQLT--P----ALLH-SRCLCVDR 191 (284)
T ss_dssp CCGGGCC--T----TTTS-CSEEEEEC
T ss_pred CCCCCCC--c----ccCC-ccEEEEec
Confidence 8766533 1 1223 45666665
No 191
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.16 E-value=2.8e-11 Score=123.93 Aligned_cols=68 Identities=13% Similarity=0.136 Sum_probs=63.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceE--EEEEeeecC-CCCceEEEEecCHHHHHHHHHHHhcCccccCce
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTV--SGVEVGQNK-GSRAHAIVEFTTVEAADFIKCLARERLSYGNSF 74 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V--~s~~i~~dr-~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~ 74 (890)
++|||+|||+++|+++|+++|++| |+| .+++|+.++ +++|||||+|++.++|.+|+..+| |..++|+.
T Consensus 124 ~~l~v~NLp~~~t~~~L~~~F~~~---G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~ln-g~~~~g~~ 194 (205)
T 3tyt_A 124 NVLHFFNAPLEVTEENFFEICDEL---GVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLN-HYQMKNPN 194 (205)
T ss_dssp SEEEEEEECTTCCHHHHHHHHHHH---TCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHT-TCEECCSS
T ss_pred ceEEEeCCCCCCCHHHHHHHHHhc---CCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhC-CCCccCCC
Confidence 579999999999999999999999 999 999999998 677999999999999999999998 78888874
No 192
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.15 E-value=6.9e-11 Score=124.41 Aligned_cols=80 Identities=10% Similarity=0.073 Sum_probs=72.6
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCcccc---CceeE
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYG---NSFLK 76 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~---gr~L~ 76 (890)
+.+|||+|||+++|+++|+++|+.| |.|.+|+|+.|. ++||||||+|.+.++|.+|+..+|++..+. ||.|.
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~---G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~ 172 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQF---GPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVI 172 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGG---SCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCE
T ss_pred CCcccccCCCCCCCHHHHHHHHHhc---CCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEE
Confidence 3689999999999999999999999 999999999998 699999999999999999999997566655 99999
Q ss_pred EecCCCCC
Q 035741 77 ASSAKRRT 84 (890)
Q Consensus 77 v~ea~~di 84 (890)
|..+.+.-
T Consensus 173 v~~~~~~~ 180 (261)
T 3sde_A 173 VEPMEQFD 180 (261)
T ss_dssp EEECCCEE
T ss_pred EeeccccC
Confidence 99886543
No 193
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.15 E-value=5.4e-11 Score=118.89 Aligned_cols=77 Identities=22% Similarity=0.265 Sum_probs=71.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCc-eEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCcccc-CceeEEec
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEG-TVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYG-NSFLKASS 79 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G-~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~-gr~L~v~e 79 (890)
+++|||+|||.++|+++|+++|++| | +|.+++|+.+ +||||||+|++.++|.+|+..+| |..++ |+.|+|.-
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~---G~~v~~v~i~~~--~~g~afV~f~~~~~A~~A~~~l~-g~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSN---GGVVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLH-NHDLGENHHLRVSF 193 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHT---TSCCCEEEESST--TSSCEEEECSSHHHHHHHHHHHT-SSCCSSCCSCCEEE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHc---CCCceEEEEEeC--CCcEEEEEeCCHHHHHHHHHHhc-CCccCCCCeEEEEe
Confidence 4679999999999999999999999 9 9999999754 58999999999999999999998 78888 99999999
Q ss_pred CCCCC
Q 035741 80 AKRRT 84 (890)
Q Consensus 80 a~~di 84 (890)
|++.|
T Consensus 194 a~~~i 198 (198)
T 1qm9_A 194 SKSTI 198 (198)
T ss_dssp ECCCC
T ss_pred ecccC
Confidence 88765
No 194
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.14 E-value=4.6e-11 Score=126.19 Aligned_cols=79 Identities=18% Similarity=0.162 Sum_probs=74.1
Q ss_pred CceEEEeCCCCCC-CHHHHHHHHhhccCCceEEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLA-SPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~-t~~~l~~~f~~~~~~G~V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
+++|||+|||+++ |+++|+++|+.| |+|.+++|..|+ ++||||||+|++.++|.+|+..+| |..++|+.|+|+
T Consensus 184 ~~~l~v~nlp~~~~~~~~l~~~f~~~---G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~v~ 259 (284)
T 3smz_A 184 SRCLCVDRLPPGFNDVDALCRALSAV---HSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQAD-GLSLGGSHLRVS 259 (284)
T ss_dssp CSEEEEECCCTTCCCHHHHHHHTCSS---SCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHT-TCEETTEECEEE
T ss_pred ccEEEEecCCcccCCHHHHHHHhhCC---CCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhC-CCccCCeEEEEE
Confidence 4689999999995 999999999999 999999999998 689999999999999999999998 899999999999
Q ss_pred cCCCCC
Q 035741 79 SAKRRT 84 (890)
Q Consensus 79 ea~~di 84 (890)
-|.++-
T Consensus 260 ~a~~~~ 265 (284)
T 3smz_A 260 FCAPGP 265 (284)
T ss_dssp ECCSSS
T ss_pred EecCCC
Confidence 998765
No 195
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.14 E-value=1.1e-10 Score=120.47 Aligned_cols=77 Identities=22% Similarity=0.257 Sum_probs=71.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCc-eEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCcccc-CceeEEec
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEG-TVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYG-NSFLKASS 79 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G-~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~-gr~L~v~e 79 (890)
+++|||+|||+++|+++|+++|++| | +|.+++|+. ++||||||+|++.++|.+|+..+| |..++ |+.|+|.-
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~---G~~i~~v~i~~--~~~g~afV~f~~~~~A~~Ai~~l~-g~~~~~g~~l~v~~ 224 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSN---GGVVKGFKFFQ--KDRKMALIQMGSVEEAVQALIDLH-NHDLGENHHLRVSF 224 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTT---SCCEEEEEECS--SSTTCEEEEESSHHHHHHHHHHHT-TCBSSSSCBCEEEE
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHc---CCCeeEEEEEE--CCCcEEEEEECCHHHHHHHHHHHC-CCccCCCCeEEEEE
Confidence 3679999999999999999999999 9 999999975 368999999999999999999998 78888 99999999
Q ss_pred CCCCC
Q 035741 80 AKRRT 84 (890)
Q Consensus 80 a~~di 84 (890)
|++.|
T Consensus 225 a~~~i 229 (229)
T 2adc_A 225 SKSTI 229 (229)
T ss_dssp CSSCC
T ss_pred ecCCC
Confidence 98865
No 196
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.14 E-value=2.2e-11 Score=112.23 Aligned_cols=70 Identities=20% Similarity=0.162 Sum_probs=63.5
Q ss_pred EeCCCCCCCHHHHHHHH------------hhccCCceEEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccccC
Q 035741 7 LYGFASLASPKAVKEFL------------EEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYGN 72 (890)
Q Consensus 7 Vgnlp~~~t~~~l~~~f------------~~~~~~G~V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~g 72 (890)
++|||+.+|+++|++.| ++| |+|.+|+|..++ +|||||||+|++.++|++|+..+| |..|+|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~---G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~ln-g~~~~G 95 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKY---GEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLN-NRWFNG 95 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHT-TCEETT
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccC---CceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHC-CCEECC
Confidence 67888888998888777 999 999999999988 699999999999999999999998 899999
Q ss_pred ceeEEecC
Q 035741 73 SFLKASSA 80 (890)
Q Consensus 73 r~L~v~ea 80 (890)
|.|+|.-+
T Consensus 96 r~i~v~~s 103 (104)
T 1jmt_A 96 QPIHAELS 103 (104)
T ss_dssp EECCEEEC
T ss_pred EEEEEEEc
Confidence 99999754
No 197
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.13 E-value=9.6e-11 Score=123.59 Aligned_cols=73 Identities=16% Similarity=0.176 Sum_probs=68.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCcccc-CceeEEecCC
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYG-NSFLKASSAK 81 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~-gr~L~v~ea~ 81 (890)
++|||+|||.++|+++|+++|++| |.|.+|+|+.++ ||||||+|.+.++|.+|+..+| |..++ |+.|+|.-|+
T Consensus 208 ~~l~v~nl~~~~~~~~l~~~F~~~---G~i~~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~-g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 208 HILFLTNLPEETNELMLSMLFNQF---PGFKEVRLVPGR--HDIAFVEFDNEVQAGAARDALQ-GFKITQNNAMKISFAK 281 (282)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhc---CCeEEEEEecCC--CcEEEEEeCCHHHHHHHHHHcC-CcEeCCCCEEEEEEec
Confidence 679999999999999999999999 999999999666 6999999999999999999998 78888 9999999875
No 198
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.12 E-value=1.3e-10 Score=123.15 Aligned_cols=79 Identities=13% Similarity=0.176 Sum_probs=69.4
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCc-eEEEEEeeecC--CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEe
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEG-TVSGVEVGQNK--GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKAS 78 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G-~V~s~~i~~dr--~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ 78 (890)
..+|||+|||+++|+++|+++|++| | .|.+|+|..++ ++||||||+|.+.++|++|+..+| |..++|+.|+|.
T Consensus 117 ~~~l~v~nlp~~~t~~~l~~~f~~~---G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~v~ 192 (292)
T 2ghp_A 117 ECTLWMTNFPPSYTQRNIRDLLQDI---NVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLN-GLKIEGYTLVTK 192 (292)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHHT---TCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHT-TCEETTEECEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHh---CCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhC-CCEeCCcEEEEE
Confidence 3689999999999999999999999 9 99999999999 699999999999999999999888 799999999999
Q ss_pred cCCCCC
Q 035741 79 SAKRRT 84 (890)
Q Consensus 79 ea~~di 84 (890)
.|.+..
T Consensus 193 ~a~~~~ 198 (292)
T 2ghp_A 193 VSNPLE 198 (292)
T ss_dssp ECCCC-
T ss_pred ECCCCc
Confidence 987665
No 199
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.12 E-value=8.4e-11 Score=124.65 Aligned_cols=77 Identities=17% Similarity=0.268 Sum_probs=71.9
Q ss_pred CceEEEeCCCCC-CCHHHHHHHHhhccCCceEEEEEeeecC----CCCceEEEEecCHHHHHHHHHHHhcCccccCceeE
Q 035741 2 AKMIMLYGFASL-ASPKAVKEFLEEHTGEGTVSGVEVGQNK----GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLK 76 (890)
Q Consensus 2 ~kti~Vgnlp~~-~t~~~l~~~f~~~~~~G~V~s~~i~~dr----~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~ 76 (890)
+++|||+|||++ +|+++|+++|++| |+|.+|+|..|. ++||||||+|.+.++|.+|+ .+| |..++|+.|+
T Consensus 210 ~~~l~v~nlp~~~~t~~~l~~~F~~~---G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~-g~~~~g~~i~ 284 (292)
T 2ghp_A 210 GREIMIRNLSTELLDENLLRESFEGF---GSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMN-RSLLGNREIS 284 (292)
T ss_dssp TTEEEEEEECTTTCCHHHHHHHHGGG---SCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGT-TEEETTEEEE
T ss_pred CceEEEECCCcccCCHHHHHHHHhcc---CCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hhc-CCEECCcEEE
Confidence 368999999999 9999999999999 999999999985 58999999999999999999 887 7999999999
Q ss_pred EecCCCC
Q 035741 77 ASSAKRR 83 (890)
Q Consensus 77 v~ea~~d 83 (890)
|.-|.++
T Consensus 285 V~~a~~k 291 (292)
T 2ghp_A 285 VSLADKK 291 (292)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9998764
No 200
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.10 E-value=1.1e-10 Score=123.03 Aligned_cols=72 Identities=14% Similarity=0.137 Sum_probs=67.9
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCC
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAK 81 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~ 81 (890)
.+|||||||+++|+++|+++|+.| |.|.+|+|. ++||||||+|.+.++|++|+..+| |..++|+.|+|..+.
T Consensus 23 ~~l~V~nLp~~~te~~l~~~F~~~---G~i~~v~i~---~~kg~afV~f~~~~~A~~A~~~l~-g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 23 CRLFVGNLPTDITEEDFKRLFERY---GEPSEVFIN---RDRGFGFIRLESRTLAEIAKAELD-GTILKSRPLRIRFAT 94 (261)
T ss_dssp GEEEEESCCTTCCHHHHHHHTGGG---CCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHT-TCEETTEECEEEECC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhc---CCEEEEEEe---CCCcEEEEEECCHHHHHHHHHHcC-CcEECCceeEeeecc
Confidence 479999999999999999999999 999999997 678999999999999999999887 799999999999865
No 201
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.05 E-value=2.5e-10 Score=126.12 Aligned_cols=73 Identities=11% Similarity=0.088 Sum_probs=62.8
Q ss_pred CceEEEeC--CCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccc---cCc--e
Q 035741 2 AKMIMLYG--FASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSY---GNS--F 74 (890)
Q Consensus 2 ~kti~Vgn--lp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~---~gr--~ 74 (890)
+++||||| |++.+|+++|+++|++| |+|.+|.+. .+||||||+|++.++|++||+.+| |..+ .|+ .
T Consensus 18 s~~l~VgN~gl~~~~te~~L~~~F~~~---G~V~~v~~~---~~kgfaFV~f~~~~~A~~Ai~~ln-G~~~~~~~g~~~~ 90 (345)
T 3tht_A 18 TQSLVVANGGLGNGVSRNQLLPVLEKC---GLVDALLMP---PNKPYSFARYRTTEESKRAYVTLN-GKEVVDDLGQKIT 90 (345)
T ss_dssp CSEEEEETCSGGGTCCHHHHHHHHHTT---SCEEEEECC---TTCSEEEEEESSHHHHHHHHHHTT-TCEEECTTSCEEE
T ss_pred CCEEEEEcCCCCCCCCHHHHHHHHHhc---CCeEEEEEe---CCCCEEEEEECCHHHHHHHHHHhC-CCccccccCCceE
Confidence 57899999 68999999999999999 999998776 378999999999999999999999 5544 456 5
Q ss_pred eEEecCC
Q 035741 75 LKASSAK 81 (890)
Q Consensus 75 L~v~ea~ 81 (890)
|.++-++
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 7777663
No 202
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.03 E-value=3.3e-10 Score=104.55 Aligned_cols=78 Identities=14% Similarity=0.137 Sum_probs=67.9
Q ss_pred CceEEEeCC--CCCC--------CHHHHHHHHhhccCCceEEEEEeeecC-----CCCceEEEEecCHHHHHHHHHHHhc
Q 035741 2 AKMIMLYGF--ASLA--------SPKAVKEFLEEHTGEGTVSGVEVGQNK-----GSRAHAIVEFTTVEAADFIKCLARE 66 (890)
Q Consensus 2 ~kti~Vgnl--p~~~--------t~~~l~~~f~~~~~~G~V~s~~i~~dr-----~sRgfgfVem~~~~~a~~a~~~~~~ 66 (890)
++.|.+.|+ |... +++||++.|++| |+|.+|+|..|+ ++||||||+|++.++|++|+..+|
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~---G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~ln- 80 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY---GLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLT- 80 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTT---SCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHT-
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHcc---CCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhC-
Confidence 567888888 3333 347999999999 999999999987 479999999999999999999998
Q ss_pred CccccCceeEEecCCCC
Q 035741 67 RLSYGNSFLKASSAKRR 83 (890)
Q Consensus 67 ~~~~~gr~L~v~ea~~d 83 (890)
|..|+||.|+|.-+.++
T Consensus 81 G~~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 81 GRKFANRVVVTKYCDPD 97 (105)
T ss_dssp TCEETTEECEEEEECHH
T ss_pred CCEeCCCEEEEEEeCHH
Confidence 89999999999976543
No 203
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.98 E-value=6.7e-10 Score=104.91 Aligned_cols=77 Identities=16% Similarity=0.096 Sum_probs=68.4
Q ss_pred CceEEEeCCCC-----CCCHHHHHHHHhhccCCceEEEEEeeecC-------CCCceEEEEecCHHHHHHHHHHHhcCcc
Q 035741 2 AKMIMLYGFAS-----LASPKAVKEFLEEHTGEGTVSGVEVGQNK-------GSRAHAIVEFTTVEAADFIKCLARERLS 69 (890)
Q Consensus 2 ~kti~Vgnlp~-----~~t~~~l~~~f~~~~~~G~V~s~~i~~dr-------~sRgfgfVem~~~~~a~~a~~~~~~~~~ 69 (890)
+++|++.|+-. .-.++||++.|++| |+|.+|+|..|+ ++||||||+|++.++|++|+..+| |.+
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~---G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~Ln-Gr~ 95 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKF---GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALN-GRW 95 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTT---SCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHT-TCE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhcc---CCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHC-CCE
Confidence 67899999953 23579999999999 999999999987 267999999999999999999998 899
Q ss_pred ccCceeEEecCCC
Q 035741 70 YGNSFLKASSAKR 82 (890)
Q Consensus 70 ~~gr~L~v~ea~~ 82 (890)
|+||.|+|+-+..
T Consensus 96 f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 96 FAGRKVVAEVYDQ 108 (118)
T ss_dssp ETTEECEEEEECH
T ss_pred ECCcEEEEEEcCh
Confidence 9999999997644
No 204
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=5e-09 Score=96.18 Aligned_cols=65 Identities=23% Similarity=0.229 Sum_probs=57.6
Q ss_pred CCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCCCCC
Q 035741 12 SLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAKRRT 84 (890)
Q Consensus 12 ~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~~di 84 (890)
..+|+++|+++|++| |+|..|.|. +++||||||+|++.++|+.|+..+ ..+.|+.|+|+-|+++-
T Consensus 27 ~~~te~~L~~~F~~~---G~V~~v~i~--~~~rGfaFVeF~~~~~A~~Ai~~~---~~~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKY---GEVLNLVLS--SKKPGTAVVEFATVKAAELAVQNE---VGLVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTT---SCEEEEEEE--SSSSSEEEEEESCHHHHHHHHHTC---CBCSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhc---CCEEEEEEc--cCCCCEEEEEECCHHHHHHHHHhc---CCCCCCeEEEEEccCCC
Confidence 457999999999999 999999998 689999999999999999999884 34689999999987654
No 205
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.73 E-value=9.2e-09 Score=96.60 Aligned_cols=76 Identities=16% Similarity=0.133 Sum_probs=63.3
Q ss_pred CceEEEeCCCCCC----------CHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCcccc
Q 035741 2 AKMIMLYGFASLA----------SPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYG 71 (890)
Q Consensus 2 ~kti~Vgnlp~~~----------t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~ 71 (890)
++.|.+.|+=... .++||++.|++| |+|.+|.|..+ .+||||||+|++.++|++|+..+| |.+|+
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kf---G~V~~v~i~~~-~~~G~~fV~f~~~e~A~~Ai~~ln-G~~f~ 81 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKH---GGVIHIYVDKN-SAQGNVYVKCPSIAAAIAAVNALH-GRWFA 81 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTT---TCCSEEEECTT-CTTCCEEEECSSHHHHHHHHHHHT-TCEET
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhcc---CCEEEEEEecC-CCcEEEEEEECCHHHHHHHHHHhC-CCEEC
Confidence 3457777774432 356889999999 99999988544 479999999999999999999998 89999
Q ss_pred CceeEEecCCC
Q 035741 72 NSFLKASSAKR 82 (890)
Q Consensus 72 gr~L~v~ea~~ 82 (890)
||.|+|+-+..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999997643
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.66 E-value=4.3e-08 Score=88.66 Aligned_cols=73 Identities=12% Similarity=0.018 Sum_probs=63.8
Q ss_pred ceEEEeCCCC----CCCH----HHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCce
Q 035741 3 KMIMLYGFAS----LASP----KAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSF 74 (890)
Q Consensus 3 kti~Vgnlp~----~~t~----~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~ 74 (890)
-||-|.-.|. +.-. .+|.+.|++| |+|..++|+.|+ +||+|.+.++|.+||+ +| |..++||+
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~---G~Vi~vr~~~d~-----~fVtF~d~~sAlaAi~-mn-G~~v~Gr~ 77 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASF---GEVILIRFVEDK-----MWVTFLEGSSALNVLS-LN-GKELLNRT 77 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTT---CCEEEEEECSSS-----EEEEESSHHHHHHGGG-GT-TCEETTEE
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhC---CCeEEEEEecCC-----EEEEECChHHHHHHHh-cC-CeEeCCeE
Confidence 4777877773 3334 7899999999 999999999877 9999999999999999 76 89999999
Q ss_pred eEEecCCCCCC
Q 035741 75 LKASSAKRRTP 85 (890)
Q Consensus 75 L~v~ea~~di~ 85 (890)
|+|+.+.+|.+
T Consensus 78 LkV~lkt~dW~ 88 (91)
T 2dnr_A 78 ITIALKSPSGP 88 (91)
T ss_dssp EEEEECCCSSC
T ss_pred EEEEeCCCCcc
Confidence 99999999874
No 207
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.53 E-value=2e-07 Score=88.58 Aligned_cols=71 Identities=13% Similarity=0.093 Sum_probs=63.0
Q ss_pred ceEEEeCCCCC-CCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecC-HHHHHHHHHHHh-cCccccCceeEEec
Q 035741 3 KMIMLYGFASL-ASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTT-VEAADFIKCLAR-ERLSYGNSFLKASS 79 (890)
Q Consensus 3 kti~Vgnlp~~-~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~-~~~a~~a~~~~~-~~~~~~gr~L~v~e 79 (890)
.-|||+|+|++ +|.++|+++|++| |+|..|.+..++. +|||+|.+ +++|+.|+..+| +++.+.|..+++.-
T Consensus 19 ~il~v~~l~~~~~sredLke~F~~~---G~V~~Vd~~~g~~---tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 19 CLLKFSGDLDDQTCREDLHILFSNH---GEIKWIDFVRGAK---EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CEEEEEESCCSSCCHHHHHHHTCSS---CCEEEEECCTTCS---EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred eEEEEecCCCCcCCHHHHHHHHHhc---CCEEEEEEecCCC---EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 45999999999 9999999999999 9999999996654 69999999 788888888887 68999999888764
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.45 E-value=2.4e-07 Score=94.91 Aligned_cols=66 Identities=17% Similarity=0.053 Sum_probs=59.0
Q ss_pred CCCHHHHHHHHhhccCCceEEEEEeeecC-------CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCCC
Q 035741 13 LASPKAVKEFLEEHTGEGTVSGVEVGQNK-------GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAKR 82 (890)
Q Consensus 13 ~~t~~~l~~~f~~~~~~G~V~s~~i~~dr-------~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~~ 82 (890)
.-.+++|++.|++| |+|.+|+|..++ ++||||||+|++.++|++|+..+| |.+|+||.|+|.-+..
T Consensus 140 ~e~~~dl~~e~~~~---G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~-gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 140 DDLEGEVTEECGKF---GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALN-GRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp TTHHHHHHHHHTTT---SCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHT-TCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHHcc---CCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhc-CceECCeEEEEEEcCH
Confidence 34578999999999 999999999544 589999999999999999999998 8999999999997654
No 209
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.32 E-value=4.7e-07 Score=82.37 Aligned_cols=67 Identities=16% Similarity=0.167 Sum_probs=59.0
Q ss_pred ceEEEeCCCCC-----CCH----HHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCc
Q 035741 3 KMIMLYGFASL-----ASP----KAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNS 73 (890)
Q Consensus 3 kti~Vgnlp~~-----~t~----~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr 73 (890)
-||-|.-++.+ .-. .+|.+.|++| |+|..++|+.|+ +||+|.+.++|.+||+ +| |..++||
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~---G~Vilvr~v~d~-----~fVtF~d~~sAl~AI~-ld-G~~v~Gr 85 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSY---GTIVLVRINQGQ-----MLVTFADSHSALSVLD-VD-GMKVKGR 85 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHH---SCCSEEEEETTE-----EEEECSCSHHHHHHHH-GG-GSEETTE
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHC---CCEEEEEEecCc-----EEEEEcChHHHHHHHh-cC-CeeeCCe
Confidence 47888888754 222 5799999999 999999999998 9999999999999999 76 8999999
Q ss_pred eeEEec
Q 035741 74 FLKASS 79 (890)
Q Consensus 74 ~L~v~e 79 (890)
+|+|+.
T Consensus 86 ~L~V~~ 91 (95)
T 1ufw_A 86 AVKISG 91 (95)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 999997
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.19 E-value=0.0014 Score=60.48 Aligned_cols=74 Identities=12% Similarity=0.165 Sum_probs=64.3
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhc--cCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEH--TGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~--~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
+++|.|.|||-.+.++-|.-+||+. .|-|.|.+++... +=|+|+|.+.++|+.+++. ....+.|..|.|.+
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-----~~AvItF~d~~va~rVL~k--~~H~L~~~~LsV~P 80 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-----CGGVLTFREPADAERVLAQ--ADHELHGAQLSLRP 80 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-----TEEEEEESSHHHHHHHHTC--SCCBSSSSBCEEEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-----CcEEEEEcChHHHHHHhcC--CcceecCeEEEEEc
Confidence 5789999999999999999999996 5999999999862 7789999999999888776 34789999999987
Q ss_pred CCC
Q 035741 80 AKR 82 (890)
Q Consensus 80 a~~ 82 (890)
..+
T Consensus 81 ~~~ 83 (104)
T 2dhx_A 81 APP 83 (104)
T ss_dssp CCC
T ss_pred CCC
Confidence 433
No 211
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.0015 Score=60.90 Aligned_cols=74 Identities=16% Similarity=0.297 Sum_probs=65.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhcc--CCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEec
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHT--GEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASS 79 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~--~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~e 79 (890)
.+||-+.|||=+++.+-+++|++++. -+|.+..+-++.|++ =|+|+|.+.+.|.+|...++ |..|.||.|++--
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~---GAivef~d~~~AgKasLaL~-G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN---GAIIIFRDSKFAAKMLMILN-GSQFQGKVIRSGT 96 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT---EEEEECSCHHHHHHHHHHHS-SEEETTEEEEEEC
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC---ceEEEEccchhhHHHHhhcC-CeeecCeEEEecC
Confidence 36899999999999999999999993 578888999998874 49999999999999998887 8999999999864
No 212
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=94.94 E-value=0.038 Score=52.94 Aligned_cols=32 Identities=9% Similarity=-0.057 Sum_probs=29.4
Q ss_pred EEEeeecC-CCCceEEEEecCHHHHHHHHHHHh
Q 035741 34 GVEVGQNK-GSRAHAIVEFTTVEAADFIKCLAR 65 (890)
Q Consensus 34 s~~i~~dr-~sRgfgfVem~~~~~a~~a~~~~~ 65 (890)
+++|+.+. ++||||||+|.+.++|++|+..++
T Consensus 2 ~~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~ 34 (158)
T 2kn4_A 2 QYKLILNGKTLKGETTTEAVDAATAEKVFKQYA 34 (158)
T ss_dssp EEEEEEECSSCEEEEEEECSSHHHHHHHHHHHH
T ss_pred cEEEEecCccccchhHHHHHHHHhHHHHHHhhc
Confidence 57888888 899999999999999999998877
No 213
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=90.89 E-value=0.4 Score=45.53 Aligned_cols=46 Identities=9% Similarity=-0.047 Sum_probs=38.8
Q ss_pred EeeecC-CCCceEEEEecCHHHHHHHHHHH-hcCccccCceeEEecCCCC
Q 035741 36 EVGQNK-GSRAHAIVEFTTVEAADFIKCLA-RERLSYGNSFLKASSAKRR 83 (890)
Q Consensus 36 ~i~~dr-~sRgfgfVem~~~~~a~~a~~~~-~~~~~~~gr~L~v~ea~~d 83 (890)
.|..+- +.+|+++|||.+.++|++|+..+ | |..++| .++++.+..+
T Consensus 4 al~l~g~~l~G~~~ve~~~~~~A~~a~~~~~n-g~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 4 KLILNGKTLKGETTTEAVDAATAEKVFKQYAN-DNGVDG-EWTYDDATKT 51 (150)
T ss_dssp EEEECCSSSCEEEEEECSSHHHHTTTHHHHHH-HHTCCC-EEEEETTTTE
T ss_pred EeeeccccccccceeeecCHHHHHHHHHHHhc-CCCCCC-ceecccccCc
Confidence 344444 68999999999999999999998 7 789999 9999988653
No 214
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=88.53 E-value=0.64 Score=42.94 Aligned_cols=73 Identities=8% Similarity=-0.035 Sum_probs=57.9
Q ss_pred ceEEEeCCCCCC-CH----HHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEE
Q 035741 3 KMIMLYGFASLA-SP----KAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKA 77 (890)
Q Consensus 3 kti~Vgnlp~~~-t~----~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v 77 (890)
.||.+.|++..+ .. ++++++|.+| +...+-... +|=.=..|-|.+.++|.+|-..+. +..|+|+.++|
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~---~~~~tF~~l---kSFRRirv~F~~~~~A~~AR~~Lh-~~~f~g~~~r~ 78 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTY---DKDTTFQYF---KSFKRVRINFSNPLSAADARLRLH-KTEFLGKEMKL 78 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTT---CSSCEEEEE---TTTTEEEEECSSTTHHHHHHHTST-TSEETTEECEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhh---CcCcceeec---CcceEEEEEeCChHHHHHHHHHhc-cceecCceeEE
Confidence 579999998866 43 4568899999 666665544 443356899999999999998887 79999999999
Q ss_pred ecCCC
Q 035741 78 SSAKR 82 (890)
Q Consensus 78 ~ea~~ 82 (890)
--|++
T Consensus 79 YFgq~ 83 (104)
T 1wey_A 79 YFAQT 83 (104)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99873
No 215
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=87.27 E-value=1.5 Score=41.48 Aligned_cols=67 Identities=9% Similarity=0.178 Sum_probs=54.4
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCce-eEEec
Q 035741 4 MIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSF-LKASS 79 (890)
Q Consensus 4 ti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~-L~v~e 79 (890)
-|-|.|+|.+. .+.|...|+++ |+|..... + ...-+--|+|++..+|++|+.. ||..++|.. +-|.+
T Consensus 26 wVtVFGFp~~~-~~~VL~~F~~~---G~Iv~~~~--~-~~~NWihI~Y~s~~~A~rAL~k--NG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 26 WVTVFGFPQAS-ASYILLQFAQY---GNILKHVM--S-NTGNWMHIRYQSKLQARKALSK--DGRIFGESIMIGVKP 93 (119)
T ss_dssp EEEEECCCGGG-HHHHHHHHHTT---SCEEEEEE--C-SSSSEEEEEESSHHHHHHHHTT--TTCEETTTEECEEEE
T ss_pred EEEEECCCHHH-HHHHHHHHHhh---CcEEEecc--C-CCCCeEEEEeCCHHHHHHHHHh--CCeEecCCEEEEEEE
Confidence 48899999995 88899999999 99998776 2 3447899999999999999888 688887543 44544
No 216
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=83.19 E-value=0.51 Score=54.09 Aligned_cols=52 Identities=17% Similarity=0.275 Sum_probs=38.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHH
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFI 60 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a 60 (890)
.+|+|. .|...++++|.++|++| |.|.++-.-.+++ -|+.|||.+.++++++
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~---g~i~~~~~~~~~g--~~~~vef~~~~~~~~~ 105 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQF---GPINNHFFYESFG--LYAVVEFCQKESIGSL 105 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGG---SCCCCEEEECSSS--EEEEEECC---CCHHH
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhc---CCcceEEEEccCC--eEEEEEeCCHHHHHHH
Confidence 478997 79999999999999999 9999876664433 7999999998877644
No 217
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=64.53 E-value=11 Score=34.56 Aligned_cols=62 Identities=11% Similarity=0.124 Sum_probs=47.6
Q ss_pred EEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCcee
Q 035741 5 IMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFL 75 (890)
Q Consensus 5 i~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L 75 (890)
++| +||.+-.-.||.++|+.| |. +.|+=+-| +.|||-|.+.+.|..|+..++..-.|.-+.+
T Consensus 9 ~~l-~FP~ewKt~Di~~lFs~f---gg-v~I~WidD----TsAlvvf~~~~~a~~al~~i~~~~~y~i~ty 70 (101)
T 3ctr_A 9 LHV-TFPKEWKTSDLYQLFSAF---GN-IQISWIDD----TSAFVSLSQPEQVKIAVNTSKYAESYRIQTY 70 (101)
T ss_dssp EEE-ECCTTCCHHHHHHHTTTS---EE-EEEEEEET----TEEEEEEEEECHHHHHHHHHTTCSSCCCCCH
T ss_pred EEE-eCChhhhhHHHHHHHhcc---CC-EEEEEEcC----CeEEEEecCHHHHHHHHHhcccCCceEEEEh
Confidence 456 999999999999999999 73 34555544 7899999999999999887652344444443
No 218
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=58.51 E-value=12 Score=34.27 Aligned_cols=60 Identities=12% Similarity=0.156 Sum_probs=45.4
Q ss_pred EEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCc
Q 035741 5 IMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNS 73 (890)
Q Consensus 5 i~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr 73 (890)
+++ +||.+..-.||.++|+.| |.| .|+=+- =+.|||-|.+.+.|..|+..++..-.|.-+
T Consensus 19 f~l-~FP~ewKt~DI~~lFs~f---ggv-~I~Wid----DTsAlvvf~~~~~a~~al~~i~k~~~y~i~ 78 (100)
T 1whv_A 19 LHV-TFPKEWKTSDLYQLFSAF---GNI-QISWID----DTSAFVSLSQPEQVQIAVNTSKYAESYRIQ 78 (100)
T ss_dssp EEE-ECCTTCCHHHHHHHHTTT---CSC-CCEEEE----TTEEEEECSCHHHHHHHHHHHHHCCSSEEE
T ss_pred EEE-eCChhhhhHHHHHHhhcc---CCE-EEEEEc----CCeEEEEecCHHHHHHHHHhcccCCceEEE
Confidence 556 999999999999999999 633 344443 378999999999999998876522334333
No 219
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=51.12 E-value=53 Score=29.34 Aligned_cols=64 Identities=13% Similarity=0.102 Sum_probs=46.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---C--CCceEEEEecCHHHHHHHHHHHhcCccc
Q 035741 3 KMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---G--SRAHAIVEFTTVEAADFIKCLARERLSY 70 (890)
Q Consensus 3 kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~--sRgfgfVem~~~~~a~~a~~~~~~~~~~ 70 (890)
.+|=|.+||.+.|++++.+.++.. +++.-..-+..+ + .-.-|.|.|.+.+....-....+ |..|
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~---~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~-g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPM---PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFD-GYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSC---CCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHT-TCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCc---ccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhC-CcEE
Confidence 356699999999999999999988 666666655555 1 11447899999876666666665 4433
No 220
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=42.17 E-value=34 Score=32.77 Aligned_cols=69 Identities=14% Similarity=0.243 Sum_probs=49.6
Q ss_pred EEEeCCCCCCCHHHHHHHHhhccCCceEEE-EEeee-----------cCC-----CCceEEEEecCHHHHHHHHHHHhcC
Q 035741 5 IMLYGFASLASPKAVKEFLEEHTGEGTVSG-VEVGQ-----------NKG-----SRAHAIVEFTTVEAADFIKCLARER 67 (890)
Q Consensus 5 i~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s-~~i~~-----------dr~-----sRgfgfVem~~~~~a~~a~~~~~~~ 67 (890)
|-|.|+|.+. +..|.+.|+++ |+|.. ..+.. .++ ...+-.|+|++..+|..|+.. +|
T Consensus 10 VtVFGFp~~~-~~~VI~~Fs~~---G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~--NG 83 (132)
T 3p3d_A 10 ILVFGYPETM-ANQVIAYFQEF---GTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE--NG 83 (132)
T ss_dssp EEEECCCGGG-HHHHHHHHGGG---SCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT--TT
T ss_pred EEEEecCHHH-HHHHHHHHHhh---ceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh--CC
Confidence 7799997665 56788899999 98654 11110 011 246679999999999888877 79
Q ss_pred ccccCceeEEec
Q 035741 68 LSYGNSFLKASS 79 (890)
Q Consensus 68 ~~~~gr~L~v~e 79 (890)
..++|.-+=|-+
T Consensus 84 ~ii~G~mIGV~P 95 (132)
T 3p3d_A 84 AVFNGVLLGVIP 95 (132)
T ss_dssp CEETTEECEEEE
T ss_pred eEeCcEEEEEEE
Confidence 999998665654
No 221
>1b64_A Elongation factor 1-beta; guanine nucleotide exchange factor, G-protein, translation elongation; NMR {Homo sapiens} SCOP: d.58.12.1
Probab=33.76 E-value=51 Score=29.59 Aligned_cols=58 Identities=16% Similarity=0.294 Sum_probs=48.4
Q ss_pred hhhHHHHHHHHhhcCeEecceEeEEEeeccCccccCeEEEEecCCCCCHHHHHHHhcCccC
Q 035741 332 RTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFRE 392 (890)
Q Consensus 332 ~~~i~~rv~~~L~~Gi~I~gR~y~FLa~SnSqLRe~s~wFfa~~~~~t~~~Ir~wmG~F~~ 392 (890)
.+.+.++|+.++.+|+.+++-+...+||+ ++.=.+.+.-++...+.+++.+-+-.|.+
T Consensus 21 l~~L~~~Vr~i~~~Gl~wg~~k~~piafG---ikkL~i~~vveDd~v~tD~lee~i~~~ed 78 (91)
T 1b64_A 21 MAKLEECVRSIQADGLVWGSSKLVPVGYG---IKKLQIQCVVEDDKVGTDMLEEQITAFED 78 (91)
T ss_dssp HHHHHHHHHHCCCTTCEEEEEEEEESSSS---CEEEEEEEEECTTSSCHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhCcCCcEEEEEEEEEEEee---EEEEEEEEEEECCccChHHHHHHHHhccC
Confidence 67888999999999999999999999998 44444666667778899999888877765
No 222
>1f60_B Elongation factor EEF1BA; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: d.58.12.1 PDB: 1g7c_B* 2b7c_B 2b7b_B 1ije_B* 1ijf_B*
Probab=30.42 E-value=55 Score=29.52 Aligned_cols=58 Identities=10% Similarity=0.240 Sum_probs=47.4
Q ss_pred hhhHHHHHHHHhhcCeEecceEeEEEeeccCccccCeEEEEecCCCCCHHHHHHHhcCccC
Q 035741 332 RTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFRE 392 (890)
Q Consensus 332 ~~~i~~rv~~~L~~Gi~I~gR~y~FLa~SnSqLRe~s~wFfa~~~~~t~~~Ir~wmG~F~~ 392 (890)
.+.+.+.|+.++.+|+.+++-..+.+||+ |+.=.+.+.-++...+.+++-+-+-.|.+
T Consensus 24 l~~L~~~Vr~i~~~Gl~wg~~k~~piafG---lkkL~i~~vveDd~~~tD~lee~i~~~ed 81 (94)
T 1f60_B 24 LEEMVANVKAIEMEGLTWGAHQFIPIGFG---IKKLQINCVVEDDKVSLDDLQQSIEEDED 81 (94)
T ss_dssp HHHHHHHHHTCCCTTEEEEEEEEEEEETT---EEEEEEEEEEETTTCCHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHhCcCCcEEEEEEEEEEeee---eEEEEEEEEEECCccChHHHHHHHHhccC
Confidence 67888999999999999999999999998 44334666667777888888887777765
No 223
>1gh8_A Translation elongation factor 1BETA; alpha-beta sandwich, gene regulation, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.58.12.1
Probab=29.38 E-value=52 Score=29.38 Aligned_cols=61 Identities=10% Similarity=0.135 Sum_probs=49.1
Q ss_pred hhhhHHHHHHHHhhcCeEecceEeEEEeeccCccccCeEEEEecCCCCCHHHHHHHhcCccCCC
Q 035741 331 RRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIK 394 (890)
Q Consensus 331 ~~~~i~~rv~~~L~~Gi~I~gR~y~FLa~SnSqLRe~s~wFfa~~~~~t~~~Ir~wmG~F~~i~ 394 (890)
..+.+.+.|+.++.+|+.+++-..+.+||+ |+.=.+.+.-++...+.+.+-+-+-.|.+.+
T Consensus 18 Dl~~L~~~vk~~~~~gl~w~~~k~~piafG---lk~L~i~~vveD~~~~td~lee~i~~~e~Vq 78 (89)
T 1gh8_A 18 DLEALKKEIQERIPEGTELHKIDEEPIAFG---LVALNVMVVVGDAEGGTEAAEESLSGIEGVS 78 (89)
T ss_dssp CHHHHHHHHHHHSCTTSEECCCCEEECSSS---CEEEEEEEEESSSCGGGGHHHHHHTTSCSSE
T ss_pred CHHHHHHHHHHhccCCcEEeeeeEEEEEcc---eeeEEEEEEEEcCCcChHHHHHHHhccCCcc
Confidence 367888999999999999999999999998 4444466666777788888888777776543
No 224
>4ayb_A DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_A 2y0s_A 2waq_A 4b1o_A 4b1p_W 2pmz_A 3hkz_A
Probab=26.18 E-value=32 Score=42.43 Aligned_cols=48 Identities=21% Similarity=0.270 Sum_probs=35.9
Q ss_pred eEEEeeCCCCCCCceEEEEEecCCCCCCCCCeEEcCCCCCCCCCCccc--CCCCCCCeEEEE
Q 035741 590 LMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECS--GSDQDGEIYFVC 649 (890)
Q Consensus 590 ~VlV~RnPclHPGDIr~v~AVd~P~L~hL~dVIVFp~kG~Rplps~lS--GGDLDGD~Y~Vi 649 (890)
.||+-|-|+||.-=||-++++=.|. +-=|=||.-|+ ..|+|||+-.|-
T Consensus 416 ~VLlNRqPTLHr~si~a~~~~l~~g------------ktirlhp~vC~~yNADFDGDeMnvH 465 (880)
T 4ayb_A 416 VVLFNRQPSLHRISMMAHRVRVLKG------------LTFRLNLLVCPPYNADFDGDEMNLH 465 (880)
T ss_dssp EEEEECSSCCSGGGEEEEEEEECSS------------SSEEECGGGHHHHTCCSSSCEEEEE
T ss_pred EEEecCCCcccccceeeeeeecccC------------ceeeeccccccccccCcccceeEEe
Confidence 7899999999999999999987764 11122333343 579999998875
No 225
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=26.03 E-value=95 Score=25.84 Aligned_cols=63 Identities=10% Similarity=0.078 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHhhccC--CceEEEEEeeecCCCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecCC
Q 035741 12 SLASPKAVKEFLEEHTG--EGTVSGVEVGQNKGSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSAK 81 (890)
Q Consensus 12 ~~~t~~~l~~~f~~~~~--~G~V~s~~i~~dr~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea~ 81 (890)
-.+...++..++....| ...|-.++|. -.|.||+-.... |..++..++ +....|+.++|+.++
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~-----d~~s~v~v~~~~-~~~~~~~l~-~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIM-----DNASYVEILNGK-GPHVLKVMK-NTTVKGKQLKVNKAN 75 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEEC-----SSCEEEEECTTC-HHHHHHHHT-TCCC---CCCEEECC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEe-----CCcEEEEECHHH-HHHHHHHhc-cccCcCceEEEEECC
Confidence 35677888888887764 5567777775 259999996665 667777776 688999999998775
No 226
>2yy3_A Elongation factor 1-beta; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 2.50A {Pyrococcus horikoshii}
Probab=24.85 E-value=72 Score=28.59 Aligned_cols=60 Identities=10% Similarity=0.212 Sum_probs=47.5
Q ss_pred hhhhHHHHHHHHhhcCeEecceEeEEEeeccCccccCeEEEEecCCCC-CHHHHHHHhcCccCC
Q 035741 331 RRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPEL-TAADIRERMGDFREI 393 (890)
Q Consensus 331 ~~~~i~~rv~~~L~~Gi~I~gR~y~FLa~SnSqLRe~s~wFfa~~~~~-t~~~Ir~wmG~F~~i 393 (890)
..+.+.+.|+.++.+|+.+++-..+.+||+ |+.=.+.+.-++... +.+.+-+-+-.|...
T Consensus 20 Dl~~L~~~vk~~~~~gl~w~~~k~~pIafG---lk~L~i~~vveD~~~~~tD~lee~i~~~e~V 80 (91)
T 2yy3_A 20 NLDELEEKLKKVIPEKYGLAKVEREPIAFG---LVALKFYVLGRDEEGYSFDEVAEKFEEVENV 80 (91)
T ss_dssp CHHHHHHHHHHHSCTTCEEEEEEEEECTTS---CEEEEEEEEECSSTTCCHHHHHHHHHHSTTE
T ss_pred CHHHHHHHHHHhccCCcEEeeeeEEEEEcc---eeeEEEEEEEECCCccccHHHHHHHhcCCCc
Confidence 367888999999999999999999999998 444446666677767 888887776666543
No 227
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=24.12 E-value=52 Score=42.27 Aligned_cols=50 Identities=22% Similarity=0.344 Sum_probs=36.9
Q ss_pred ceEEEeeCCCCCCCceEEEEEecCCCCCCCCCeEEcCCCCCCCCCCccc--CCCCCCCeEEEEe
Q 035741 589 GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECS--GSDQDGEIYFVCW 650 (890)
Q Consensus 589 G~VlV~RnPclHPGDIr~v~AVd~P~L~hL~dVIVFp~kG~Rplps~lS--GGDLDGD~Y~ViW 650 (890)
..||.-|.|+||.--||-++++=.|. +-=|=||.-|+ ..|+|||+..|--
T Consensus 419 d~VLlNRqPTLHr~sIma~~~~l~~~------------ktirlnp~vC~~yNADFDGDeMnvHv 470 (1407)
T 3lu0_D 419 HPVLLNRAPTLHRLGIQAFEPVLIEG------------KAIQLHPLVCAAYNADFDGDQMAVHV 470 (1407)
T ss_dssp CCEEEEESSCCSGGGEEEEEEEEESS------------SSEEECTGGGGTTTCCSSSCEEEEEC
T ss_pred eeeeecCCcccccccceeeeEEecCC------------ceEEeChhhcccccCCcccceeeeec
Confidence 37999999999999999998865543 22233444444 5899999998764
Done!