BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035742
(214 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 52 ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGK 111
+ L+N G +G + + S+ +LV L LS N GTIPS +G+LSKL + L N L G+
Sbjct: 399 LYLQNNGFTGKIPP-TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457
Query: 112 IPLEVGLLTHLKVLHFQFNQ 131
IP E+ + L+ L FN
Sbjct: 458 IPQELMYVKTLETLILDFND 477
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%)
Query: 67 SFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH 126
+F + ++ LD+S N G IP +IG++ L ++L N +SG IP EVG L L +L
Sbjct: 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686
Query: 127 FQFNQ 131
N+
Sbjct: 687 LSSNK 691
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 61/125 (48%), Gaps = 12/125 (9%)
Query: 52 ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGK 111
+SL +G + DF + L LDLS N F G +P G+ S L ++L SN SG+
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 112 IPLEVGL-LTHLKVLHFQFNQXXXXXXXXXXIKGKHPRDFLCSILSSSLTKDVALDEMLD 170
+P++ L + LKVL FN+ G+ P L ++ +S LT D++ +
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNE----------FSGELPES-LTNLSASLLTLDLSSNNFSG 382
Query: 171 PRLPT 175
P LP
Sbjct: 383 PILPN 387
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 70 SFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQF 129
S P L L+L N G+IP ++G+L L+ + L SN+L G+IP + LT L +
Sbjct: 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713
Query: 130 NQ 131
N
Sbjct: 714 NN 715
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 74 LVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFN 130
L L L N G IPS + N + L++ISL +N+L+G+IP +G L +L +L N
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 30/57 (52%)
Query: 74 LVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFN 130
L L L NGF G IP + N S+L + L N LSG IP +G L+ L+ L N
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 52 ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGK 111
ISL N L+G + + L L LS N F G IP+++G+ L ++ L +N +G
Sbjct: 495 ISLSNNRLTGEIPKW-IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553
Query: 112 IP 113
IP
Sbjct: 554 IP 555
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 77 LDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVG 117
+ LS N G IP IG L L+ + L +N SG IP E+G
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535
Score = 33.5 bits (75), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 38/145 (26%)
Query: 15 NRSLLPSWTNATTNVSSKICPCAWFGISCSD--------AGRVINIS------------- 53
+++LLP W SS PC + G++C D + + +N+
Sbjct: 26 DKNLLPDW-------SSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTG 78
Query: 54 -----LRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLG--TIPSQIGNLSKLSYISLQSN 106
L N+ ++G++S F S+ L LDLS N G T + +G+ S L ++++ SN
Sbjct: 79 LESLFLSNSHINGSVSGFKCSA--SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSN 136
Query: 107 QLSGKIPLEVGL-LTHLKVLHFQFN 130
L + GL L L+VL N
Sbjct: 137 TLDFPGKVSGGLKLNSLEVLDLSAN 161
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 52 ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGK 111
++L + +SG++ D L LDLS N G IP + L+ L+ I L +N LSG
Sbjct: 661 LNLGHNDISGSIPD-EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 719
Query: 112 IPLEVG 117
IP E+G
Sbjct: 720 IP-EMG 724
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 45 DAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQ 104
D + ++ + LSG S + S+ +L L++S N F+G IP L L Y+SL
Sbjct: 221 DCSALQHLDISGNKLSGDFSR-AISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLA 277
Query: 105 SNQLSGKIP 113
N+ +G+IP
Sbjct: 278 ENKFTGEIP 286
Score = 30.0 bits (66), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 27/81 (33%)
Query: 77 LDLSLNGFLGTIPSQIGNLSK---------------------------LSYISLQSNQLS 109
LDLS N F G +P + NLS L + LQ+N +
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407
Query: 110 GKIPLEVGLLTHLKVLHFQFN 130
GKIP + + L LH FN
Sbjct: 408 GKIPPTLSNCSELVSLHLSFN 428
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 74 LVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKI-PLEVGLLTHLKVLHFQF 129
L HLD+S N G I ++L +++ SNQ G I PL + L +L + +F
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKF 281
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 52 ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGK 111
+ L+N G +G + + S+ +LV L LS N GTIPS +G+LSKL + L N L G+
Sbjct: 396 LYLQNNGFTGKIPP-TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 454
Query: 112 IPLEVGLLTHLKVLHFQFNQ 131
IP E+ + L+ L FN
Sbjct: 455 IPQELMYVKTLETLILDFND 474
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%)
Query: 67 SFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH 126
+F + ++ LD+S N G IP +IG++ L ++L N +SG IP EVG L L +L
Sbjct: 624 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 683
Query: 127 FQFNQ 131
N+
Sbjct: 684 LSSNK 688
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 61/125 (48%), Gaps = 12/125 (9%)
Query: 52 ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGK 111
+SL +G + DF + L LDLS N F G +P G+ S L ++L SN SG+
Sbjct: 271 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 112 IPLEVGL-LTHLKVLHFQFNQXXXXXXXXXXIKGKHPRDFLCSILSSSLTKDVALDEMLD 170
+P++ L + LKVL FN+ G+ P L ++ +S LT D++ +
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNE----------FSGELPES-LTNLSASLLTLDLSSNNFSG 379
Query: 171 PRLPT 175
P LP
Sbjct: 380 PILPN 384
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 70 SFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQF 129
S P L L+L N G+IP ++G+L L+ + L SN+L G+IP + LT L +
Sbjct: 651 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 710
Query: 130 NQ 131
N
Sbjct: 711 NN 712
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 74 LVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFN 130
L L L N G IPS + N + L++ISL +N+L+G+IP +G L +L +L N
Sbjct: 465 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 521
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 30/57 (52%)
Query: 74 LVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFN 130
L L L NGF G IP + N S+L + L N LSG IP +G L+ L+ L N
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 449
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 52 ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGK 111
ISL N L+G + + L L LS N F G IP+++G+ L ++ L +N +G
Sbjct: 492 ISLSNNRLTGEIPKW-IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 550
Query: 112 IP 113
IP
Sbjct: 551 IP 552
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 77 LDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVG 117
+ LS N G IP IG L L+ + L +N SG IP E+G
Sbjct: 492 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 532
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 38/145 (26%)
Query: 15 NRSLLPSWTNATTNVSSKICPCAWFGISCSD--------AGRVINIS------------- 53
+++LLP W SS PC + G++C D + + +N+
Sbjct: 23 DKNLLPDW-------SSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTG 75
Query: 54 -----LRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLG--TIPSQIGNLSKLSYISLQSN 106
L N+ ++G++S F S+ L LDLS N G T + +G+ S L ++++ SN
Sbjct: 76 LESLFLSNSHINGSVSGFKCSA--SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSN 133
Query: 107 QLSGKIPLEVGL-LTHLKVLHFQFN 130
L + GL L L+VL N
Sbjct: 134 TLDFPGKVSGGLKLNSLEVLDLSAN 158
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 52 ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGK 111
++L + +SG++ D L LDLS N G IP + L+ L+ I L +N LSG
Sbjct: 658 LNLGHNDISGSIPD-EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 716
Query: 112 IPLEVG 117
IP E+G
Sbjct: 717 IP-EMG 721
Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 45 DAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQ 104
D + ++ + LSG S + S+ +L L++S N F+G IP L L Y+SL
Sbjct: 218 DCSALQHLDISGNKLSGDFSR-AISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLA 274
Query: 105 SNQLSGKIP 113
N+ +G+IP
Sbjct: 275 ENKFTGEIP 283
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 27/81 (33%)
Query: 77 LDLSLNGFLGTIPSQIGNLSK---------------------------LSYISLQSNQLS 109
LDLS N F G +P + NLS L + LQ+N +
Sbjct: 345 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 404
Query: 110 GKIPLEVGLLTHLKVLHFQFN 130
GKIP + + L LH FN
Sbjct: 405 GKIPPTLSNCSELVSLHLSFN 425
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 74 LVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKI-PLEVGLLTHLKVLHFQF 129
L HLD+S N G I ++L +++ SNQ G I PL + L +L + +F
Sbjct: 222 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKF 278
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 52 ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGK 111
+ + +T +SG + DF S LV LD S N GT+P I +L L I+ N++SG
Sbjct: 106 LYITHTNVSGAIPDF-LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164
Query: 112 IPLEVGLLTHL 122
IP G + L
Sbjct: 165 IPDSYGSFSKL 175
Score = 30.8 bits (68), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 42 SCSDAGRVINISLRNTGLSGTLSDFSFSSFPQL-VHLDLSLNGFLGTIPSQIGNLSKLSY 100
S S ++ I+ +SG + D S+ SF +L + +S N G IP NL+ L++
Sbjct: 144 SISSLPNLVGITFDGNRISGAIPD-SYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAF 201
Query: 101 ISLQSNQLSGKIPLEVGLLTHLKVLHFQFN 130
+ L N L G + G + + +H N
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 58/158 (36%), Gaps = 36/158 (22%)
Query: 3 ALLKWKASLQSHNRSLLPSWTNATTNVSSKICPCAWFGISC---SDAGRVINISLRNTGL 59
ALL+ K L N + L SW T C W G+ C + RV N+ L L
Sbjct: 10 ALLQIKKDLG--NPTTLSSWLPTT-----DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62
Query: 60 SGTLS-DFSFSSFPQLVHLDLS-LNGFLGTIPSQIGNLSKLSYI---------------- 101
S ++ P L L + +N +G IP I L++L Y+
Sbjct: 63 PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122
Query: 102 --------SLQSNQLSGKIPLEVGLLTHLKVLHFQFNQ 131
N LSG +P + L +L + F N+
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 33.9 bits (76), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 41 ISCSDAGRVINIS---LRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSK 97
IS SD R +N+ L + G++ T+ + SFSS L HLDLS N S LS
Sbjct: 67 ISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 125
Query: 98 LSYISLQSNQLSGKIPLEVGLLTHLKVLH 126
L++++L N K E L +HL L
Sbjct: 126 LTFLNLLGNPY--KTLGETSLFSHLTKLQ 152
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.9 bits (76), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 41 ISCSDAGRVINIS---LRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSK 97
IS SD R +N+ L + G++ T+ + SFSS L HLDLS N S LS
Sbjct: 41 ISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 99
Query: 98 LSYISLQSNQLSGKIPLEVGLLTHLKVLHF 127
L++++L N K E L +HL L
Sbjct: 100 LTFLNLLGNPY--KTLGETSLFSHLTKLQI 127
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 33.5 bits (75), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 62 TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEV 116
TL+ F+SFP L L+L+ N P NL L + L+SN+L IPL V
Sbjct: 46 TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGV 99
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 79 LSLNGF-LGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF 127
L LNG L +P++I NLS L + L N+L+ +P E+G LK +F
Sbjct: 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYF 300
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 74 LVHLDLSLNGFLGT-IPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL 125
L HLDLS N F I + GN+S+L ++ L + L L + L KVL
Sbjct: 92 LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVL 144
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 51 NISLRNTGLSGT--LSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQL 108
N++++N +SGT + S +HLD S N T+ G+L++L + LQ NQL
Sbjct: 301 NMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 30.4 bits (67), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 52 ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLS 109
I L N +S TLS+ SFS+ QL+ L LS N P L L +SL N +S
Sbjct: 59 IDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 52 ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQ 107
I LR L+ DF ++ P LV +DLS N F P+Q N S L +++ +
Sbjct: 493 IDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF-SKFPTQPLNSSTLKGFGIRNQR 547
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 68 FSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEV-GLLTHLKVLH 126
F L L L N P +L+KL+Y+SL N+L +P V LT LK L
Sbjct: 105 FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELR 163
Query: 127 FQFNQ 131
NQ
Sbjct: 164 LYNNQ 168
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 74 LVHLDLSLNGFLGTIP--SQIGNLSKLSYISLQSNQL 108
L HLDLS N F +P + GNL+KL+++ L + +
Sbjct: 123 LRHLDLSFNDF-DVLPVCKEFGNLTKLTFLGLSAAKF 158
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 49 VINISLRNTGLSGT-LSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQ 107
+ N+SL N L T S FS + L LDLS N L L Y+SL+ N
Sbjct: 224 IQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNN 283
Query: 108 LSGKIPLEVGLLTHLKVL 125
+ P L++L+ L
Sbjct: 284 IQRLSPRSFYGLSNLRYL 301
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 22/46 (47%)
Query: 61 GTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSN 106
T+ +F S L HLDLS N S G LS L Y++L N
Sbjct: 89 NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 134
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 22/46 (47%)
Query: 61 GTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSN 106
T+ +F S L HLDLS N S G LS L Y++L N
Sbjct: 63 NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 11/108 (10%)
Query: 34 CPCAWFGISCSDAGRV---INISLRNTGLS------GTLSDFSFSSFPQLVHLDLSLNGF 84
C C+ + C GR I + T L +L + F L L L N
Sbjct: 5 CSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK- 63
Query: 85 LGTIPSQIGN-LSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQ 131
L ++P+ + N L+ L+Y++L +NQL LT LK L NQ
Sbjct: 64 LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ 111
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 26.9 bits (58), Expect = 8.5, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 92 IGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF 127
+ N +++ +SL G++P +G LT LKVL F
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSF 354
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,391,082
Number of Sequences: 62578
Number of extensions: 182711
Number of successful extensions: 864
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 784
Number of HSP's gapped (non-prelim): 90
length of query: 214
length of database: 14,973,337
effective HSP length: 95
effective length of query: 119
effective length of database: 9,028,427
effective search space: 1074382813
effective search space used: 1074382813
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)