Query 035742
Match_columns 214
No_of_seqs 316 out of 2131
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 05:59:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035742.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035742hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.8 2.2E-18 4.7E-23 161.5 10.0 126 1-137 31-157 (968)
2 PLN03150 hypothetical protein; 99.7 7.8E-18 1.7E-22 150.5 8.5 129 2-138 375-508 (623)
3 PLN00113 leucine-rich repeat r 99.3 3.7E-12 7.9E-17 119.7 5.6 91 47-138 475-565 (968)
4 PLN03150 hypothetical protein; 99.1 1.4E-10 3.1E-15 104.1 5.5 91 46-137 441-532 (623)
5 KOG0617 Ras suppressor protein 99.0 2.2E-11 4.9E-16 90.4 -0.5 84 47-134 33-116 (264)
6 KOG0617 Ras suppressor protein 99.0 4E-11 8.6E-16 89.1 -0.5 105 46-153 55-160 (264)
7 PF13855 LRR_8: Leucine rich r 99.0 3.6E-10 7.8E-15 70.6 2.9 60 48-108 2-61 (61)
8 PF13855 LRR_8: Leucine rich r 98.9 2.5E-10 5.5E-15 71.3 1.4 61 72-132 1-61 (61)
9 KOG4237 Extracellular matrix p 98.8 2E-09 4.3E-14 89.2 2.9 107 29-137 36-157 (498)
10 PF08263 LRRNT_2: Leucine rich 98.8 2.7E-09 5.8E-14 61.8 2.3 37 1-44 5-43 (43)
11 KOG4194 Membrane glycoprotein 98.8 1.1E-09 2.5E-14 94.6 -0.5 90 48-138 294-383 (873)
12 KOG0472 Leucine-rich repeat pr 98.7 2.1E-09 4.6E-14 89.3 0.2 105 47-154 435-539 (565)
13 PF14580 LRR_9: Leucine-rich r 98.7 2.3E-08 5E-13 75.6 4.7 82 48-133 43-126 (175)
14 PF14580 LRR_9: Leucine-rich r 98.6 1.6E-08 3.5E-13 76.4 2.9 81 48-134 20-102 (175)
15 KOG0444 Cytoskeletal regulator 98.6 1.1E-08 2.3E-13 89.6 1.5 93 48-143 79-173 (1255)
16 KOG0472 Leucine-rich repeat pr 98.6 5.1E-09 1.1E-13 87.1 -0.7 96 35-133 431-541 (565)
17 KOG0618 Serine/threonine phosp 98.6 6.9E-09 1.5E-13 93.7 -1.0 86 46-135 382-467 (1081)
18 KOG4194 Membrane glycoprotein 98.5 1.4E-08 3.1E-13 88.0 0.1 87 47-134 269-355 (873)
19 KOG0444 Cytoskeletal regulator 98.5 4E-08 8.6E-13 86.1 1.5 83 47-133 103-186 (1255)
20 KOG0532 Leucine-rich repeat (L 98.3 6.7E-08 1.5E-12 83.6 -0.9 87 52-143 103-189 (722)
21 PRK15387 E3 ubiquitin-protein 98.3 3.1E-07 6.8E-12 83.8 3.2 61 73-138 403-463 (788)
22 KOG4579 Leucine-rich repeat (L 98.3 1.4E-07 2.9E-12 67.9 0.3 84 46-133 52-136 (177)
23 KOG4237 Extracellular matrix p 98.3 2.5E-07 5.4E-12 76.9 0.9 86 47-133 274-359 (498)
24 KOG0618 Serine/threonine phosp 98.3 1.4E-07 3.1E-12 85.4 -0.5 100 48-151 46-145 (1081)
25 PF12799 LRR_4: Leucine Rich r 98.2 1E-06 2.2E-11 51.1 2.9 36 73-109 2-37 (44)
26 KOG1259 Nischarin, modulator o 98.2 3.8E-07 8.3E-12 73.7 -0.2 57 49-109 286-342 (490)
27 PF12799 LRR_4: Leucine Rich r 98.1 8.8E-07 1.9E-11 51.3 1.3 39 96-135 1-39 (44)
28 PRK15370 E3 ubiquitin-protein 98.1 3.1E-06 6.7E-11 77.5 5.3 79 47-135 325-403 (754)
29 PRK15387 E3 ubiquitin-protein 98.1 5.2E-06 1.1E-10 76.0 5.2 13 48-60 343-355 (788)
30 COG4886 Leucine-rich repeat (L 98.0 2.8E-06 6.1E-11 72.3 3.0 88 47-138 116-204 (394)
31 PRK15370 E3 ubiquitin-protein 98.0 5.5E-06 1.2E-10 75.9 4.9 35 97-134 263-297 (754)
32 COG4886 Leucine-rich repeat (L 98.0 2.3E-06 4.9E-11 72.9 1.9 97 48-148 141-237 (394)
33 cd00116 LRR_RI Leucine-rich re 98.0 2.4E-06 5.2E-11 70.3 1.1 38 72-109 137-178 (319)
34 KOG1259 Nischarin, modulator o 98.0 2.9E-06 6.3E-11 68.7 1.3 90 38-133 293-387 (490)
35 PLN03210 Resistant to P. syrin 97.9 1.3E-05 2.9E-10 77.1 5.5 81 48-131 612-692 (1153)
36 PLN03210 Resistant to P. syrin 97.9 1.6E-05 3.4E-10 76.6 5.9 95 38-137 627-721 (1153)
37 KOG0532 Leucine-rich repeat (L 97.9 2.4E-06 5.2E-11 74.2 -0.3 36 98-134 213-248 (722)
38 cd00116 LRR_RI Leucine-rich re 97.9 2.8E-06 6E-11 69.9 -0.3 88 46-134 80-179 (319)
39 KOG4579 Leucine-rich repeat (L 97.8 9.3E-07 2E-11 63.7 -2.9 94 42-138 22-118 (177)
40 KOG4658 Apoptotic ATPase [Sign 97.8 9.5E-06 2.1E-10 75.5 2.5 89 47-137 545-635 (889)
41 KOG4658 Apoptotic ATPase [Sign 97.5 4.7E-05 1E-09 71.0 2.1 85 45-131 569-653 (889)
42 KOG0531 Protein phosphatase 1, 97.5 7.1E-05 1.5E-09 64.4 2.6 85 47-137 95-179 (414)
43 KOG1859 Leucine-rich repeat pr 97.3 2.6E-05 5.7E-10 69.8 -2.0 80 47-133 187-267 (1096)
44 KOG1644 U2-associated snRNP A' 97.2 0.00032 6.8E-09 53.8 3.3 82 48-133 43-126 (233)
45 KOG1859 Leucine-rich repeat pr 97.2 2.7E-05 5.8E-10 69.8 -3.5 83 48-135 165-247 (1096)
46 KOG2739 Leucine-rich acidic nu 97.0 0.00044 9.5E-09 54.9 2.2 83 47-134 43-130 (260)
47 KOG0531 Protein phosphatase 1, 97.0 0.00025 5.4E-09 61.0 0.7 82 48-134 73-154 (414)
48 KOG3207 Beta-tubulin folding c 96.9 0.00025 5.5E-09 60.1 0.4 88 46-133 171-259 (505)
49 KOG0473 Leucine-rich repeat pr 96.8 4.2E-05 9.2E-10 59.9 -4.7 84 46-133 41-124 (326)
50 KOG1187 Serine/threonine prote 96.6 0.0034 7.3E-08 53.1 4.7 75 138-213 268-350 (361)
51 KOG3207 Beta-tubulin folding c 96.5 0.00064 1.4E-08 57.7 -0.2 84 48-133 223-314 (505)
52 KOG2982 Uncharacterized conser 96.4 0.00096 2.1E-08 54.3 0.2 84 48-132 72-158 (418)
53 PF00560 LRR_1: Leucine Rich R 96.3 0.0014 3.1E-08 31.7 0.5 18 98-116 2-19 (22)
54 KOG2123 Uncharacterized conser 96.2 0.00036 7.9E-09 56.2 -3.1 86 43-134 15-102 (388)
55 PF00560 LRR_1: Leucine Rich R 96.1 0.002 4.3E-08 31.2 0.5 18 74-92 2-19 (22)
56 KOG1644 U2-associated snRNP A' 96.0 0.0045 9.7E-08 47.7 2.3 79 50-133 22-101 (233)
57 KOG3665 ZYG-1-like serine/thre 95.7 0.006 1.3E-07 55.8 2.0 91 40-134 166-264 (699)
58 KOG2123 Uncharacterized conser 95.3 0.0019 4.1E-08 52.1 -2.2 81 42-126 36-123 (388)
59 KOG1909 Ran GTPase-activating 94.9 0.0082 1.8E-07 49.8 0.5 37 96-132 270-310 (382)
60 KOG2739 Leucine-rich acidic nu 94.9 0.012 2.6E-07 46.8 1.3 66 66-133 37-104 (260)
61 KOG3665 ZYG-1-like serine/thre 94.9 0.0094 2E-07 54.6 0.7 85 46-133 147-233 (699)
62 PF13504 LRR_7: Leucine rich r 94.2 0.024 5.2E-07 25.5 0.9 11 98-108 3-13 (17)
63 PRK15386 type III secretion pr 93.8 0.1 2.2E-06 44.9 4.6 60 47-115 52-113 (426)
64 smart00370 LRR Leucine-rich re 92.4 0.15 3.3E-06 25.3 2.3 14 72-85 2-15 (26)
65 smart00369 LRR_TYP Leucine-ric 92.4 0.15 3.3E-06 25.3 2.3 14 72-85 2-15 (26)
66 PF13306 LRR_5: Leucine rich r 92.2 0.21 4.6E-06 35.0 3.8 79 48-130 13-91 (129)
67 KOG1909 Ran GTPase-activating 91.4 0.1 2.2E-06 43.5 1.4 86 47-133 157-254 (382)
68 KOG2982 Uncharacterized conser 91.1 0.12 2.5E-06 42.5 1.5 70 37-108 85-158 (418)
69 COG5238 RNA1 Ran GTPase-activa 91.0 0.085 1.8E-06 42.8 0.6 84 47-131 30-131 (388)
70 PRK15386 type III secretion pr 89.7 0.26 5.6E-06 42.4 2.5 61 67-134 47-109 (426)
71 cd05048 PTKc_Ror Catalytic Dom 88.9 0.5 1.1E-05 37.8 3.6 31 181-214 252-282 (283)
72 KOG0473 Leucine-rich repeat pr 88.5 0.022 4.7E-07 45.1 -4.3 73 62-136 32-104 (326)
73 PF13306 LRR_5: Leucine rich r 88.3 0.44 9.5E-06 33.4 2.6 77 48-129 36-112 (129)
74 cd05094 PTKc_TrkC Catalytic do 87.2 1 2.2E-05 36.2 4.5 25 189-213 256-280 (291)
75 cd05050 PTKc_Musk Catalytic do 86.9 0.98 2.1E-05 36.2 4.2 28 187-214 261-288 (288)
76 cd05038 PTKc_Jak_rpt2 Catalyti 86.9 0.49 1.1E-05 37.7 2.4 28 187-214 255-282 (284)
77 PF13516 LRR_6: Leucine Rich r 86.8 0.17 3.7E-06 24.6 -0.2 13 73-85 3-15 (24)
78 PHA02988 hypothetical protein; 86.2 1.5 3.2E-05 35.4 4.8 29 182-213 249-277 (283)
79 cd08229 STKc_Nek7 Catalytic do 85.3 1.9 4.2E-05 33.9 5.1 29 182-213 235-263 (267)
80 cd05049 PTKc_Trk Catalytic dom 85.1 1.3 2.8E-05 35.2 4.0 30 182-214 251-280 (280)
81 smart00364 LRR_BAC Leucine-ric 84.3 0.62 1.3E-05 23.4 1.1 17 97-114 3-19 (26)
82 cd05058 PTKc_Met_Ron Catalytic 84.2 2.2 4.8E-05 33.5 4.9 25 189-213 233-257 (262)
83 PF07714 Pkinase_Tyr: Protein 84.0 0.7 1.5E-05 36.7 1.9 28 182-212 232-259 (259)
84 cd05081 PTKc_Jak2_Jak3_rpt2 Ca 83.9 1.3 2.8E-05 35.4 3.5 26 188-213 256-281 (284)
85 cd05091 PTKc_Ror2 Catalytic do 83.8 1.5 3.2E-05 35.1 3.8 25 189-213 257-281 (283)
86 cd05112 PTKc_Itk Catalytic dom 83.5 0.97 2.1E-05 35.4 2.6 27 187-213 230-256 (256)
87 cd05116 PTKc_Syk Catalytic dom 83.3 1.5 3.2E-05 34.6 3.5 29 182-213 225-253 (257)
88 cd05063 PTKc_EphR_A2 Catalytic 83.1 1 2.3E-05 35.6 2.6 27 188-214 240-266 (268)
89 cd05051 PTKc_DDR Catalytic dom 83.1 1.1 2.3E-05 36.1 2.7 29 186-214 268-296 (296)
90 cd05061 PTKc_InsR Catalytic do 82.8 1.3 2.8E-05 35.6 3.1 27 188-214 251-277 (288)
91 cd05095 PTKc_DDR2 Catalytic do 82.8 1.2 2.7E-05 35.9 3.0 27 188-214 270-296 (296)
92 cd05062 PTKc_IGF-1R Catalytic 82.6 1.6 3.4E-05 34.8 3.5 27 188-214 251-277 (277)
93 cd05113 PTKc_Btk_Bmx Catalytic 82.5 2.9 6.2E-05 32.9 5.0 26 188-213 231-256 (256)
94 cd05093 PTKc_TrkB Catalytic do 82.5 1.3 2.9E-05 35.6 3.0 26 188-213 252-277 (288)
95 cd05069 PTKc_Yes Catalytic dom 82.2 3.4 7.4E-05 32.5 5.3 30 181-213 229-258 (260)
96 cd05097 PTKc_DDR_like Catalyti 82.1 1.2 2.6E-05 35.9 2.7 27 187-213 268-294 (295)
97 cd05148 PTKc_Srm_Brk Catalytic 81.9 1.2 2.7E-05 35.0 2.6 26 188-213 234-259 (261)
98 cd05033 PTKc_EphR Catalytic do 81.8 1.9 4.1E-05 34.1 3.7 27 188-214 238-264 (266)
99 cd05052 PTKc_Abl Catalytic dom 81.7 1.3 2.9E-05 34.9 2.7 25 189-213 236-260 (263)
100 cd05045 PTKc_RET Catalytic dom 81.7 1.1 2.3E-05 36.1 2.2 26 188-213 259-284 (290)
101 cd05104 PTKc_Kit Catalytic dom 81.5 1 2.2E-05 38.1 2.1 26 189-214 348-373 (375)
102 cd05053 PTKc_FGFR Catalytic do 81.3 1.3 2.8E-05 35.6 2.6 27 187-213 263-289 (293)
103 cd05102 PTKc_VEGFR3 Catalytic 81.3 1.7 3.7E-05 35.8 3.4 26 188-213 307-332 (338)
104 cd05114 PTKc_Tec_Rlk Catalytic 81.3 1.4 3E-05 34.7 2.6 27 187-213 230-256 (256)
105 cd05075 PTKc_Axl Catalytic dom 81.3 2.1 4.5E-05 33.9 3.7 26 188-213 244-269 (272)
106 cd05092 PTKc_TrkA Catalytic do 81.1 2 4.4E-05 34.3 3.7 30 182-214 251-280 (280)
107 cd08528 STKc_Nek10 Catalytic d 81.0 1.6 3.5E-05 34.5 3.0 22 192-213 247-268 (269)
108 cd05084 PTKc_Fes Catalytic dom 80.5 1.4 3.1E-05 34.4 2.5 26 189-214 227-252 (252)
109 cd05068 PTKc_Frk_like Catalyti 80.3 1.4 3.1E-05 34.7 2.5 27 187-213 233-259 (261)
110 cd05085 PTKc_Fer Catalytic dom 79.9 1.8 3.9E-05 33.7 2.9 28 187-214 223-250 (250)
111 cd05078 PTK_Jak2_Jak3_rpt1 Pse 79.5 1.4 3.1E-05 34.7 2.2 26 188-213 233-258 (258)
112 cd05044 PTKc_c-ros Catalytic d 79.4 3.2 7E-05 32.7 4.3 30 181-213 239-268 (269)
113 smart00365 LRR_SD22 Leucine-ri 79.2 1.9 4E-05 21.7 1.8 12 73-84 3-14 (26)
114 cd05080 PTKc_Tyk2_rpt2 Catalyt 78.7 1.6 3.4E-05 34.9 2.3 26 188-213 254-279 (283)
115 cd05066 PTKc_EphR_A Catalytic 78.4 2.3 4.9E-05 33.7 3.1 27 188-214 239-265 (267)
116 cd05090 PTKc_Ror1 Catalytic do 78.3 3 6.6E-05 33.3 3.8 30 182-214 253-282 (283)
117 KOG0192 Tyrosine kinase specif 78.2 3.8 8.3E-05 34.8 4.5 71 132-213 230-301 (362)
118 cd05096 PTKc_DDR1 Catalytic do 77.7 2 4.3E-05 34.8 2.6 26 188-213 278-303 (304)
119 cd05064 PTKc_EphR_A10 Catalyti 76.9 3.3 7.2E-05 32.8 3.7 26 189-214 239-264 (266)
120 cd05060 PTKc_Syk_like Catalyti 76.9 1.9 4.2E-05 33.8 2.3 26 189-214 229-254 (257)
121 cd05032 PTKc_InsR_like Catalyt 76.6 3.7 8.1E-05 32.5 3.9 27 188-214 251-277 (277)
122 cd05035 PTKc_Axl_like Catalyti 76.5 3.4 7.4E-05 32.5 3.6 26 188-213 245-270 (273)
123 cd05041 PTKc_Fes_like Catalyti 76.2 2.2 4.8E-05 33.3 2.4 30 182-214 222-251 (251)
124 cd05072 PTKc_Lyn Catalytic dom 76.0 2.5 5.4E-05 33.2 2.7 27 188-214 234-260 (261)
125 cd05083 PTKc_Chk Catalytic dom 75.9 3.1 6.7E-05 32.6 3.2 26 189-214 228-253 (254)
126 cd05065 PTKc_EphR_B Catalytic 75.5 2.2 4.8E-05 33.8 2.3 27 188-214 241-267 (269)
127 cd05082 PTKc_Csk Catalytic dom 75.2 3.2 6.9E-05 32.5 3.1 24 190-213 231-254 (256)
128 cd05059 PTKc_Tec_like Catalyti 74.8 2.4 5.2E-05 33.3 2.3 27 187-213 230-256 (256)
129 cd05043 PTK_Ryk Pseudokinase d 74.8 2.5 5.4E-05 33.6 2.4 25 189-213 250-274 (280)
130 cd05070 PTKc_Fyn_Yrk Catalytic 74.6 2.8 6.1E-05 32.9 2.7 26 188-213 233-258 (260)
131 KOG3864 Uncharacterized conser 74.2 0.79 1.7E-05 35.5 -0.6 81 48-129 102-185 (221)
132 cd08529 STKc_FA2-like Catalyti 73.7 6.3 0.00014 30.6 4.5 22 190-211 232-253 (256)
133 cd00192 PTKc Catalytic domain 73.5 3.2 6.9E-05 32.3 2.7 26 188-213 237-262 (262)
134 cd05040 PTKc_Ack_like Catalyti 73.5 3.6 7.9E-05 32.1 3.0 25 189-213 232-256 (257)
135 cd05047 PTKc_Tie Catalytic dom 73.2 2.8 6E-05 33.3 2.3 27 187-213 240-266 (270)
136 COG5238 RNA1 Ran GTPase-activa 73.2 2.5 5.4E-05 34.6 2.0 43 67-109 87-133 (388)
137 cd05101 PTKc_FGFR2 Catalytic d 72.7 2.6 5.6E-05 34.1 2.1 25 189-213 270-294 (304)
138 cd05036 PTKc_ALK_LTK Catalytic 72.6 3.7 8E-05 32.7 2.9 25 189-213 252-276 (277)
139 cd08224 STKc_Nek6_Nek7 Catalyt 72.4 3.7 8.1E-05 32.2 2.9 25 189-213 239-263 (267)
140 cd05074 PTKc_Tyro3 Catalytic d 72.0 3.1 6.7E-05 32.9 2.3 28 186-213 243-270 (273)
141 cd05106 PTKc_CSF-1R Catalytic 71.9 2.6 5.7E-05 35.6 2.0 30 182-214 342-371 (374)
142 cd05039 PTKc_Csk_like Catalyti 71.7 3.4 7.3E-05 32.3 2.5 24 190-213 231-254 (256)
143 cd05098 PTKc_FGFR1 Catalytic d 71.4 3.4 7.3E-05 33.6 2.5 25 189-213 273-297 (307)
144 cd05111 PTK_HER3 Pseudokinase 71.3 3.9 8.4E-05 32.7 2.8 26 188-213 241-266 (279)
145 smart00368 LRR_RI Leucine rich 71.3 3.7 7.9E-05 20.8 1.7 13 73-85 3-15 (28)
146 smart00750 KIND kinase non-cat 71.3 6.9 0.00015 28.7 4.0 25 188-212 142-166 (176)
147 cd05054 PTKc_VEGFR Catalytic d 71.1 3.2 6.9E-05 34.5 2.3 28 186-213 304-331 (337)
148 cd05071 PTKc_Src Catalytic dom 70.8 6.7 0.00015 30.9 4.0 26 188-213 233-258 (262)
149 cd05055 PTKc_PDGFR Catalytic d 70.1 3.8 8.2E-05 33.3 2.5 26 189-214 275-300 (302)
150 cd05046 PTK_CCK4 Pseudokinase 70.0 4.5 9.7E-05 32.0 2.9 27 188-214 249-275 (275)
151 cd05079 PTKc_Jak1_rpt2 Catalyt 69.8 4.1 8.8E-05 32.6 2.6 26 188-213 256-281 (284)
152 KOG0581 Mitogen-activated prot 69.3 8.9 0.00019 32.4 4.4 39 167-210 296-334 (364)
153 KOG2120 SCF ubiquitin ligase, 69.1 2.6 5.6E-05 34.9 1.3 37 71-107 312-349 (419)
154 cd05103 PTKc_VEGFR2 Catalytic 68.8 3.7 8E-05 34.1 2.2 26 188-213 312-337 (343)
155 cd05076 PTK_Tyk2_rpt1 Pseudoki 68.2 4.4 9.5E-05 32.3 2.5 26 188-213 249-274 (274)
156 cd08228 STKc_Nek6 Catalytic do 68.2 4.9 0.00011 31.6 2.7 29 182-213 235-263 (267)
157 cd08218 STKc_Nek1 Catalytic do 68.2 5.7 0.00012 31.0 3.1 26 182-210 227-252 (256)
158 cd05099 PTKc_FGFR4 Catalytic d 68.1 4.1 8.8E-05 33.2 2.3 25 189-213 267-291 (314)
159 smart00219 TyrKc Tyrosine kina 68.1 7 0.00015 30.3 3.6 24 189-212 235-258 (258)
160 cd05115 PTKc_Zap-70 Catalytic 68.0 6.9 0.00015 30.8 3.6 29 182-213 225-253 (257)
161 cd06642 STKc_STK25-YSK1 Cataly 67.7 12 0.00026 29.6 4.9 23 189-211 231-253 (277)
162 cd08217 STKc_Nek2 Catalytic do 67.4 6.6 0.00014 30.6 3.3 23 189-211 240-262 (265)
163 cd06621 PKc_MAPKK_Pek1_like Ca 66.8 8.3 0.00018 30.8 3.8 23 188-210 243-265 (287)
164 cd05067 PTKc_Lck_Blk Catalytic 66.0 5.3 0.00012 31.3 2.5 26 188-213 233-258 (260)
165 cd05089 PTKc_Tie1 Catalytic do 64.9 5.3 0.00012 32.2 2.4 25 189-213 249-273 (297)
166 cd05034 PTKc_Src_like Catalyti 64.7 6.2 0.00013 30.9 2.7 26 188-213 234-259 (261)
167 cd05100 PTKc_FGFR3 Catalytic d 64.1 5 0.00011 33.1 2.1 26 188-213 266-291 (334)
168 cd06623 PKc_MAPKK_plant_like C 63.8 13 0.00028 29.0 4.3 28 181-211 229-256 (264)
169 cd05073 PTKc_Hck Catalytic dom 63.4 6.7 0.00015 30.8 2.7 25 189-213 234-258 (260)
170 cd05056 PTKc_FAK Catalytic dom 63.3 9.2 0.0002 30.1 3.5 29 182-213 235-263 (270)
171 cd05037 PTK_Jak_rpt1 Pseudokin 62.2 6.4 0.00014 30.7 2.3 26 188-213 234-259 (259)
172 cd05086 PTKc_Aatyk2 Catalytic 61.7 9.4 0.0002 30.2 3.2 19 194-213 249-267 (268)
173 cd06605 PKc_MAPKK Catalytic do 61.4 15 0.00034 28.6 4.4 27 182-211 231-257 (265)
174 cd05110 PTKc_HER4 Catalytic do 61.3 7 0.00015 31.6 2.4 27 187-213 240-266 (303)
175 cd05107 PTKc_PDGFR_beta Cataly 61.1 6 0.00013 33.9 2.1 29 182-213 369-397 (401)
176 cd05105 PTKc_PDGFR_alpha Catal 60.4 5.9 0.00013 34.0 1.9 27 187-213 369-395 (400)
177 cd08223 STKc_Nek4 Catalytic do 60.1 10 0.00022 29.5 3.1 22 189-210 232-253 (257)
178 KOG2345 Serine/threonine prote 60.0 13 0.00029 30.0 3.6 29 182-213 270-298 (302)
179 cd05088 PTKc_Tie2 Catalytic do 59.5 7.4 0.00016 31.5 2.3 26 188-213 253-278 (303)
180 cd05077 PTK_Jak1_rpt1 Pseudoki 59.1 7.5 0.00016 30.7 2.2 26 188-213 237-262 (262)
181 cd05087 PTKc_Aatyk1_Aatyk3 Cat 58.1 11 0.00024 29.7 3.1 28 182-213 241-268 (269)
182 cd08221 STKc_Nek9 Catalytic do 57.6 13 0.00027 29.0 3.3 28 182-212 227-254 (256)
183 cd06641 STKc_MST3 Catalytic do 57.3 21 0.00047 28.2 4.6 21 190-210 232-252 (277)
184 cd06628 STKc_MAPKKK_Byr2_like 55.7 22 0.00047 27.8 4.4 26 182-210 238-263 (267)
185 cd06609 STKc_MST3_like Catalyt 55.1 20 0.00044 28.2 4.2 19 192-210 232-250 (274)
186 cd08225 STKc_Nek5 Catalytic do 54.7 14 0.0003 28.7 3.0 18 193-210 236-253 (257)
187 cd05108 PTKc_EGFR Catalytic do 54.7 10 0.00022 30.9 2.3 26 188-213 241-266 (316)
188 KOG0198 MEKK and related serin 54.1 20 0.00043 29.9 3.9 33 172-210 243-275 (313)
189 cd05109 PTKc_HER2 Catalytic do 54.1 11 0.00023 29.9 2.4 26 188-213 241-266 (279)
190 KOG2120 SCF ubiquitin ligase, 54.0 1.1 2.5E-05 36.9 -3.2 55 74-128 187-242 (419)
191 smart00220 S_TKc Serine/Threon 53.9 11 0.00023 28.6 2.3 24 187-210 217-240 (244)
192 cd06624 STKc_ASK Catalytic dom 48.5 21 0.00045 28.1 3.2 20 191-210 245-264 (268)
193 cd08530 STKc_CNK2-like Catalyt 48.5 24 0.00051 27.3 3.5 23 188-210 230-252 (256)
194 TIGR00864 PCC polycystin catio 48.0 11 0.00025 39.9 1.9 32 53-85 1-32 (2740)
195 cd08219 STKc_Nek3 Catalytic do 47.7 20 0.00044 27.8 3.0 19 193-211 234-252 (255)
196 cd06640 STKc_MST4 Catalytic do 47.7 25 0.00053 27.8 3.5 23 188-210 230-252 (277)
197 cd06606 STKc_MAPKKK Catalytic 47.4 23 0.00049 27.2 3.2 26 182-210 231-256 (260)
198 KOG3763 mRNA export factor TAP 46.6 14 0.00029 33.1 1.9 11 96-106 244-254 (585)
199 PF00069 Pkinase: Protein kina 45.7 16 0.00035 28.3 2.1 26 182-210 231-256 (260)
200 PLN00034 mitogen-activated pro 45.3 35 0.00076 28.3 4.2 26 182-210 302-327 (353)
201 cd07835 STKc_CDK1_like Catalyt 45.0 14 0.0003 29.3 1.7 23 188-210 257-279 (283)
202 PHA02882 putative serine/threo 44.9 35 0.00076 27.4 4.1 29 182-213 266-294 (294)
203 cd06620 PKc_MAPKK_Byr1_like Ca 44.7 14 0.0003 29.4 1.6 22 190-211 245-266 (284)
204 cd06646 STKc_MAP4K5 Catalytic 44.1 21 0.00045 28.0 2.5 27 182-211 239-265 (267)
205 cd08220 STKc_Nek8 Catalytic do 43.9 24 0.00052 27.3 2.9 19 192-210 234-252 (256)
206 cd07830 STKc_MAK_like Catalyti 43.7 21 0.00046 28.2 2.6 24 187-210 256-279 (283)
207 cd07846 STKc_CDKL2_3 Catalytic 43.3 17 0.00037 28.8 2.0 23 188-210 260-282 (286)
208 cd06608 STKc_myosinIII_like Ca 42.9 21 0.00045 27.9 2.4 19 192-210 253-271 (275)
209 cd05057 PTKc_EGFR_like Catalyt 42.7 22 0.00048 28.1 2.5 26 188-213 241-266 (279)
210 cd05118 STKc_CMGC Catalytic do 42.3 21 0.00046 28.1 2.3 24 187-210 256-279 (283)
211 cd06625 STKc_MEKK3_like Cataly 42.1 47 0.001 25.8 4.3 27 182-211 234-260 (263)
212 cd06638 STKc_myosinIIIA Cataly 42.0 23 0.00049 28.1 2.5 23 189-211 261-283 (286)
213 cd05042 PTKc_Aatyk Catalytic d 41.9 34 0.00074 26.8 3.5 19 194-213 250-268 (269)
214 cd07860 STKc_CDK2_3 Catalytic 41.8 26 0.00057 27.7 2.9 19 192-210 262-280 (284)
215 cd05122 PKc_STE Catalytic doma 41.6 22 0.00048 27.1 2.3 26 182-210 225-250 (253)
216 cd07838 STKc_CDK4_6_like Catal 40.6 30 0.00064 27.3 3.0 21 190-210 263-283 (287)
217 cd07840 STKc_CDK9_like Catalyt 40.0 22 0.00049 28.0 2.2 24 187-210 260-283 (287)
218 cd06610 STKc_OSR1_SPAK Catalyt 40.0 25 0.00055 27.3 2.5 26 182-210 238-263 (267)
219 PTZ00267 NIMA-related protein 39.6 43 0.00094 29.3 4.1 26 182-210 297-322 (478)
220 cd06629 STKc_MAPKKK_Bck1_like 39.5 23 0.00049 27.9 2.1 26 182-210 243-268 (272)
221 cd06631 STKc_YSK4 Catalytic do 39.3 33 0.00072 26.8 3.0 19 192-210 243-261 (265)
222 cd06635 STKc_TAO1 Catalytic do 38.9 58 0.0013 26.4 4.5 20 192-211 258-277 (317)
223 cd08227 PK_STRAD_alpha Pseudok 38.4 24 0.00051 28.9 2.1 25 183-210 282-306 (327)
224 cd06637 STKc_TNIK Catalytic do 38.2 25 0.00053 27.6 2.1 19 192-210 250-268 (272)
225 cd07833 STKc_CDKL Catalytic do 38.2 20 0.00042 28.4 1.6 23 188-210 262-284 (288)
226 cd05607 STKc_GRK7 Catalytic do 37.5 28 0.0006 27.7 2.4 27 182-211 224-250 (277)
227 cd07841 STKc_CDK7 Catalytic do 37.5 26 0.00055 28.0 2.2 23 189-211 260-282 (298)
228 cd08222 STKc_Nek11 Catalytic d 37.4 43 0.00092 26.0 3.4 18 193-210 239-256 (260)
229 cd05579 STKc_MAST_like Catalyt 37.4 21 0.00045 27.7 1.6 29 182-213 228-256 (265)
230 cd07861 STKc_CDK1_euk Catalyti 37.3 22 0.00048 28.1 1.8 18 193-210 264-281 (285)
231 cd00180 PKc Catalytic domain o 37.3 25 0.00054 25.7 1.9 28 185-212 188-215 (215)
232 cd06613 STKc_MAP4K3_like Catal 37.1 28 0.00062 27.0 2.3 22 189-210 238-259 (262)
233 cd06632 STKc_MEKK1_plant Catal 37.1 35 0.00076 26.3 2.8 18 193-210 237-254 (258)
234 cd07831 STKc_MOK Catalytic dom 36.8 27 0.00059 27.5 2.2 22 189-210 257-278 (282)
235 cd06651 STKc_MEKK3 Catalytic d 36.7 18 0.0004 28.3 1.2 18 193-210 243-260 (266)
236 KOG0194 Protein tyrosine kinas 36.7 38 0.00083 30.0 3.2 31 180-213 388-418 (474)
237 cd06612 STKc_MST1_2 Catalytic 36.4 22 0.00047 27.5 1.5 19 192-210 234-252 (256)
238 cd06617 PKc_MKK3_6 Catalytic d 36.1 63 0.0014 25.4 4.2 26 182-210 235-260 (283)
239 PTZ00283 serine/threonine prot 36.1 38 0.00083 29.9 3.2 26 182-210 271-296 (496)
240 cd05583 STKc_MSK_N N-terminal 35.8 28 0.00061 27.7 2.1 22 192-213 244-265 (288)
241 cd07842 STKc_CDK8_like Catalyt 35.3 27 0.00058 28.1 2.0 24 187-210 289-312 (316)
242 cd06607 STKc_TAO Catalytic dom 35.2 33 0.00072 27.7 2.5 20 192-211 248-267 (307)
243 cd08215 STKc_Nek Catalytic dom 34.9 45 0.00098 25.5 3.2 26 182-210 229-254 (258)
244 TIGR00864 PCC polycystin catio 34.6 29 0.00062 37.2 2.3 32 78-109 1-32 (2740)
245 cd07847 STKc_CDKL1_4 Catalytic 34.2 29 0.00064 27.4 2.0 22 189-210 261-282 (286)
246 cd06649 PKc_MEK2 Catalytic dom 34.1 40 0.00088 27.6 2.9 26 182-210 275-300 (331)
247 KOG1947 Leucine rich repeat pr 32.7 14 0.00031 31.8 -0.1 62 70-131 241-306 (482)
248 cd07864 STKc_CDK12 Catalytic d 32.7 34 0.00074 27.3 2.2 27 181-210 272-298 (302)
249 cd07832 STKc_CCRK Catalytic do 32.6 34 0.00073 27.0 2.1 23 188-210 259-281 (286)
250 KOG4308 LRR-containing protein 32.6 2.2 4.8E-05 37.6 -5.1 38 96-133 262-303 (478)
251 cd06622 PKc_MAPKK_PBS2_like Ca 31.7 59 0.0013 25.7 3.4 19 192-210 243-261 (286)
252 KOG3763 mRNA export factor TAP 31.5 28 0.00061 31.2 1.5 66 46-112 217-286 (585)
253 cd06615 PKc_MEK Catalytic doma 31.0 33 0.00072 27.7 1.9 23 189-211 265-287 (308)
254 cd06639 STKc_myosinIIIB Cataly 30.9 34 0.00073 27.2 1.8 23 188-210 264-286 (291)
255 cd06619 PKc_MKK5 Catalytic dom 30.8 32 0.0007 27.2 1.7 20 192-211 234-253 (279)
256 cd06627 STKc_Cdc7_like Catalyt 30.6 42 0.00091 25.7 2.3 20 191-210 231-250 (254)
257 cd06616 PKc_MKK4 Catalytic dom 30.4 35 0.00075 27.1 1.9 26 182-210 241-266 (288)
258 cd08216 PK_STRAD Pseudokinase 30.3 39 0.00085 27.2 2.2 22 189-210 273-294 (314)
259 cd06650 PKc_MEK1 Catalytic dom 29.6 57 0.0012 26.8 3.0 25 183-210 274-298 (333)
260 cd07843 STKc_CDC2L1 Catalytic 29.4 49 0.0011 26.3 2.6 25 183-210 265-289 (293)
261 cd07829 STKc_CDK_like Catalyti 29.2 45 0.00098 26.1 2.3 23 188-210 256-278 (282)
262 cd07839 STKc_CDK5 Catalytic do 29.1 47 0.001 26.2 2.4 19 192-210 262-280 (284)
263 cd06626 STKc_MEKK4 Catalytic d 29.0 44 0.00095 25.9 2.2 19 192-210 242-260 (264)
264 cd07848 STKc_CDKL5 Catalytic d 28.6 50 0.0011 26.2 2.5 24 184-210 260-283 (287)
265 PLN00009 cyclin-dependent kina 28.5 42 0.0009 26.7 2.0 21 190-210 263-283 (294)
266 cd06618 PKc_MKK7 Catalytic dom 28.4 37 0.0008 27.2 1.7 27 182-211 247-273 (296)
267 cd06917 STKc_NAK1_like Catalyt 27.9 51 0.0011 25.9 2.4 27 182-211 229-255 (277)
268 cd07865 STKc_CDK9 Catalytic do 27.8 42 0.00092 26.8 1.9 22 189-210 285-306 (310)
269 KOG0201 Serine/threonine prote 27.7 86 0.0019 27.5 3.7 61 139-210 202-262 (467)
270 cd07852 STKc_MAPK15 Catalytic 27.6 48 0.001 27.1 2.3 23 189-211 273-295 (337)
271 cd08226 PK_STRAD_beta Pseudoki 27.4 52 0.0011 26.8 2.5 24 187-210 284-307 (328)
272 cd07858 STKc_TEY_MAPK_plant Ca 27.1 41 0.00088 27.7 1.7 22 189-210 269-290 (337)
273 PF12661 hEGF: Human growth fa 26.7 8.5 0.00018 15.9 -1.2 6 38-43 8-13 (13)
274 cd07862 STKc_CDK6 Catalytic do 26.5 45 0.00097 26.5 1.8 22 189-210 265-286 (290)
275 cd07837 STKc_CdkB_plant Cataly 26.4 48 0.001 26.3 2.0 19 192-210 272-290 (295)
276 cd06636 STKc_MAP4K4_6 Catalyti 26.3 47 0.001 26.2 2.0 26 182-210 253-278 (282)
277 cd06643 STKc_SLK Catalytic dom 26.3 58 0.0013 25.7 2.5 26 182-210 236-261 (282)
278 cd07849 STKc_ERK1_2_like Catal 26.1 44 0.00096 27.4 1.8 23 189-211 270-292 (336)
279 cd07855 STKc_ERK5 Catalytic do 25.8 55 0.0012 26.8 2.3 26 182-210 268-293 (334)
280 cd06654 STKc_PAK1 Catalytic do 25.7 57 0.0012 26.2 2.3 19 192-210 251-269 (296)
281 cd07844 STKc_PCTAIRE_like Cata 25.6 51 0.0011 26.2 2.0 23 188-210 265-287 (291)
282 PHA03209 serine/threonine kina 25.6 34 0.00073 28.5 1.0 18 193-210 333-350 (357)
283 KOG1989 ARK protein kinase fam 25.6 1E+02 0.0022 29.0 4.0 38 172-213 272-309 (738)
284 cd06634 STKc_TAO2 Catalytic do 25.5 75 0.0016 25.6 3.0 19 193-211 249-267 (308)
285 cd06645 STKc_MAP4K3 Catalytic 25.2 67 0.0014 25.0 2.6 25 183-210 240-264 (267)
286 cd06614 STKc_PAK Catalytic dom 25.0 56 0.0012 25.9 2.2 27 182-211 244-270 (286)
287 cd07859 STKc_TDY_MAPK_plant Ca 24.9 54 0.0012 26.7 2.1 20 191-210 270-289 (338)
288 cd06658 STKc_PAK5 Catalytic do 24.9 66 0.0014 25.8 2.6 18 194-211 255-272 (292)
289 KOG0193 Serine/threonine prote 24.6 92 0.002 28.5 3.5 30 181-213 622-651 (678)
290 smart00367 LRR_CC Leucine-rich 24.5 58 0.0013 15.7 1.4 11 72-82 2-12 (26)
291 cd07873 STKc_PCTAIRE1 Catalyti 23.9 58 0.0012 26.1 2.0 19 192-210 267-285 (301)
292 cd07834 STKc_MAPK Catalytic do 23.7 67 0.0015 26.1 2.4 19 193-211 271-289 (330)
293 cd07866 STKc_BUR1 Catalytic do 23.6 59 0.0013 25.9 2.1 23 188-210 285-307 (311)
294 cd07874 STKc_JNK3 Catalytic do 23.6 56 0.0012 27.0 2.0 22 189-210 289-310 (355)
295 cd07851 STKc_p38 Catalytic dom 23.5 55 0.0012 27.0 1.9 22 189-210 276-297 (343)
296 cd06656 STKc_PAK3 Catalytic do 23.4 57 0.0012 26.2 1.9 19 192-210 250-268 (297)
297 KOG0195 Integrin-linked kinase 23.1 71 0.0015 26.4 2.3 42 167-214 404-445 (448)
298 cd06611 STKc_SLK_like Catalyti 23.0 55 0.0012 25.8 1.7 18 193-210 244-261 (280)
299 cd06630 STKc_MEKK1 Catalytic d 23.0 86 0.0019 24.3 2.9 22 189-210 242-263 (268)
300 cd07870 STKc_PFTAIRE2 Catalyti 22.7 63 0.0014 25.7 2.0 21 190-210 267-287 (291)
301 cd06644 STKc_STK10_LOK Catalyt 22.6 66 0.0014 25.6 2.2 19 192-210 250-268 (292)
302 cd07863 STKc_CDK4 Catalytic do 22.1 64 0.0014 25.5 2.0 21 190-210 264-284 (288)
303 cd07850 STKc_JNK Catalytic dom 21.6 81 0.0018 26.1 2.6 22 189-210 289-310 (353)
304 cd07836 STKc_Pho85 Catalytic d 21.4 80 0.0017 24.8 2.4 18 193-210 263-280 (284)
305 KOG4721 Serine/threonine prote 21.2 1.3E+02 0.0027 27.8 3.6 65 139-214 302-367 (904)
306 cd06659 STKc_PAK6 Catalytic do 21.1 1E+02 0.0022 24.8 2.9 18 193-210 253-270 (297)
307 cd07857 STKc_MPK1 Catalytic do 21.1 77 0.0017 25.9 2.3 22 189-210 270-291 (332)
308 cd06648 STKc_PAK_II Catalytic 20.4 66 0.0014 25.6 1.7 26 182-210 243-268 (285)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.76 E-value=2.2e-18 Score=161.47 Aligned_cols=126 Identities=32% Similarity=0.614 Sum_probs=100.4
Q ss_pred ChhhhhhhhcccCCCCCCCCCCcCCCCCCCCCCcCcccceeeeCCCCCeEEEEecCCCCccccCccccCCCCCCcEEeCc
Q 035742 1 ADALLKWKASLQSHNRSLLPSWTNATTNVSSKICPCAWFGISCSDAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLS 80 (214)
Q Consensus 1 ~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~c~w~gv~c~~~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~ 80 (214)
++||++||+++.+ +...+.+| ....+ +|.|.||+|+..++++.|+|++|.++|.++ ..|..+++|+.|+++
T Consensus 31 ~~~l~~~~~~~~~-~~~~~~~w-~~~~~------~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~-~~~~~l~~L~~L~Ls 101 (968)
T PLN00113 31 LELLLSFKSSIND-PLKYLSNW-NSSAD------VCLWQGITCNNSSRVVSIDLSGKNISGKIS-SAIFRLPYIQTINLS 101 (968)
T ss_pred HHHHHHHHHhCCC-CcccCCCC-CCCCC------CCcCcceecCCCCcEEEEEecCCCccccCC-hHHhCCCCCCEEECC
Confidence 4689999999964 45667899 45666 999999999977899999999999999998 899999999999999
Q ss_pred CCcCcCCChhhhh-CCcccceeeccccccccCCCccccccccchhhhcccccceeecc
Q 035742 81 LNGFLGTIPSQIG-NLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVL 137 (214)
Q Consensus 81 ~n~l~~~~p~~~~-~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p 137 (214)
+|.+.+.+|..+. .+++|++|++++|.++|.+|. +.+++|++|++++|.+++.+|
T Consensus 102 ~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p 157 (968)
T PLN00113 102 NNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIP 157 (968)
T ss_pred CCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCC
Confidence 9999988998765 788888888888777765553 334555555555555555444
No 2
>PLN03150 hypothetical protein; Provisional
Probab=99.73 E-value=7.8e-18 Score=150.54 Aligned_cols=129 Identities=29% Similarity=0.426 Sum_probs=110.7
Q ss_pred hhhhhhhhcccCCCCCCCCCCcCCCCCCCCCCcCcccceeeeCCC-----CCeEEEEecCCCCccccCccccCCCCCCcE
Q 035742 2 DALLKWKASLQSHNRSLLPSWTNATTNVSSKICPCAWFGISCSDA-----GRVINISLRNTGLSGTLSDFSFSSFPQLVH 76 (214)
Q Consensus 2 ~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~c~w~gv~c~~~-----~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~ 76 (214)
+||+++|+++... . ..+|. .++|+ .+.|.|.||.|... ..++.|+|++|.++|.+| ..+..+++|+.
T Consensus 375 ~aL~~~k~~~~~~-~--~~~W~---g~~C~-p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip-~~i~~L~~L~~ 446 (623)
T PLN03150 375 SALQTLKSSLGLP-L--RFGWN---GDPCV-PQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIP-NDISKLRHLQS 446 (623)
T ss_pred HHHHHHHHhcCCc-c--cCCCC---CCCCC-CcccccccceeeccCCCCceEEEEEECCCCCccccCC-HHHhCCCCCCE
Confidence 6899999988542 1 24793 34121 11247999999621 248999999999999999 99999999999
Q ss_pred EeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhcccccceeecch
Q 035742 77 LDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVLV 138 (214)
Q Consensus 77 L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~ 138 (214)
|+|++|.+.|.+|..++.+++|+.|++++|+++|.+|..++++++|+.|+|++|+++|.+|.
T Consensus 447 L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~ 508 (623)
T PLN03150 447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA 508 (623)
T ss_pred EECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCCh
Confidence 99999999999999999999999999999999999999999999999999999999999885
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.28 E-value=3.7e-12 Score=119.74 Aligned_cols=91 Identities=32% Similarity=0.454 Sum_probs=63.2
Q ss_pred CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhh
Q 035742 47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH 126 (214)
Q Consensus 47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~ 126 (214)
.+|+.|++++|.+++.+| ..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.++|.+|..+..+++|+.|+
T Consensus 475 ~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 553 (968)
T PLN00113 475 KRLENLDLSRNQFSGAVP-RKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLD 553 (968)
T ss_pred ccceEEECcCCccCCccC-hhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEE
Confidence 356777777777776666 6666677777777777777666776676777777777777777766676666667777777
Q ss_pred cccccceeecch
Q 035742 127 FQFNQLKLLVLV 138 (214)
Q Consensus 127 l~~N~l~g~~p~ 138 (214)
+++|+++|.+|.
T Consensus 554 Ls~N~l~~~~p~ 565 (968)
T PLN00113 554 LSQNQLSGEIPK 565 (968)
T ss_pred CCCCcccccCCh
Confidence 777777666664
No 4
>PLN03150 hypothetical protein; Provisional
Probab=99.07 E-value=1.4e-10 Score=104.13 Aligned_cols=91 Identities=31% Similarity=0.466 Sum_probs=81.8
Q ss_pred CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCcccccc-ccchh
Q 035742 46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLL-THLKV 124 (214)
Q Consensus 46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l-~~L~~ 124 (214)
..+|+.|+|++|.++|.+| ..+..+++|+.|+|++|+++|.+|..++++++|+.|++++|.++|.+|..++.+ .++..
T Consensus 441 L~~L~~L~Ls~N~l~g~iP-~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~ 519 (623)
T PLN03150 441 LRHLQSINLSGNSIRGNIP-PSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRAS 519 (623)
T ss_pred CCCCCEEECCCCcccCcCC-hHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCce
Confidence 3589999999999999999 999999999999999999999999999999999999999999999999988764 46678
Q ss_pred hhcccccceeecc
Q 035742 125 LHFQFNQLKLLVL 137 (214)
Q Consensus 125 L~l~~N~l~g~~p 137 (214)
+++.+|......|
T Consensus 520 l~~~~N~~lc~~p 532 (623)
T PLN03150 520 FNFTDNAGLCGIP 532 (623)
T ss_pred EEecCCccccCCC
Confidence 8888887655444
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.05 E-value=2.2e-11 Score=90.43 Aligned_cols=84 Identities=25% Similarity=0.441 Sum_probs=58.8
Q ss_pred CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhh
Q 035742 47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH 126 (214)
Q Consensus 47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~ 126 (214)
++++.|.|++|.++ .+| +.+..+.+|+.|++++|++. .+|..+..++.|+.|+++-|++. .+|..|+.++.|+.||
T Consensus 33 s~ITrLtLSHNKl~-~vp-pnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVP-PNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhcccCcee-ecC-CcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 46677777777777 666 67777777777777777776 66777777777777777777766 6677777777776666
Q ss_pred ccccccee
Q 035742 127 FQFNQLKL 134 (214)
Q Consensus 127 l~~N~l~g 134 (214)
+..|+++.
T Consensus 109 ltynnl~e 116 (264)
T KOG0617|consen 109 LTYNNLNE 116 (264)
T ss_pred cccccccc
Confidence 66666653
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.01 E-value=4e-11 Score=89.12 Aligned_cols=105 Identities=21% Similarity=0.297 Sum_probs=91.5
Q ss_pred CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeecccccccc-CCCccccccccchh
Q 035742 46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSG-KIPLEVGLLTHLKV 124 (214)
Q Consensus 46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g-~~p~~~~~l~~L~~ 124 (214)
..+|+.|++.+|++. .+| ..++.++.|+.|++.-|++. .+|..|+.++.|+.||+.+|++.. .+|..|..++.|+.
T Consensus 55 l~nlevln~~nnqie-~lp-~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlra 131 (264)
T KOG0617|consen 55 LKNLEVLNLSNNQIE-ELP-TSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRA 131 (264)
T ss_pred hhhhhhhhcccchhh-hcC-hhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHH
Confidence 347889999999999 899 99999999999999999998 899999999999999999999974 58889999999999
Q ss_pred hhcccccceeecchhhhhcCCCCchhhhh
Q 035742 125 LHFQFNQLKLLVLVLEVIKGKHPRDFLCS 153 (214)
Q Consensus 125 L~l~~N~l~g~~p~~~~l~g~~p~~~~~~ 153 (214)
|++++|.|.-.+|+.+.++..--..+..|
T Consensus 132 lyl~dndfe~lp~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 132 LYLGDNDFEILPPDVGKLTNLQILSLRDN 160 (264)
T ss_pred HHhcCCCcccCChhhhhhcceeEEeeccC
Confidence 99999999998888777775544444443
No 7
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.97 E-value=3.6e-10 Score=70.61 Aligned_cols=60 Identities=35% Similarity=0.552 Sum_probs=38.2
Q ss_pred CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeecccccc
Q 035742 48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQL 108 (214)
Q Consensus 48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l 108 (214)
+|+.|++++|.++ .+|...|.++++|++|++++|.+....|..|..+++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4666777777666 44435666666777777766666644455566666666666666654
No 8
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.95 E-value=2.5e-10 Score=71.31 Aligned_cols=61 Identities=33% Similarity=0.441 Sum_probs=55.1
Q ss_pred CCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhcccccc
Q 035742 72 PQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQL 132 (214)
Q Consensus 72 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l 132 (214)
++|+.|++++|+++...+..|..+++|++|++++|.++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5789999999999955556789999999999999999977778999999999999999975
No 9
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.82 E-value=2e-09 Score=89.17 Aligned_cols=107 Identities=23% Similarity=0.381 Sum_probs=89.4
Q ss_pred CCCCCcCccc---ceeeeCCCC----------CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCC
Q 035742 29 VSSKICPCAW---FGISCSDAG----------RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNL 95 (214)
Q Consensus 29 ~~~~~~~c~w---~gv~c~~~~----------~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 95 (214)
-|-+.|.|.- .-|+|+..+ ..++|+|..|.|+ .||+..|..+.+|+.|||++|+|+..-|.+|..+
T Consensus 36 ~CP~pC~Cs~~~g~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL 114 (498)
T KOG4237|consen 36 ACPAPCTCSDVEGGIVDCRGKGLTEVPANLPPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGL 114 (498)
T ss_pred cCCCCcccCCCCCceEEccCCCcccCcccCCCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhh
Confidence 3556677765 558898532 6788999999999 7887999999999999999999999999999999
Q ss_pred cccceeeccc-cccccCCC-ccccccccchhhhcccccceeecc
Q 035742 96 SKLSYISLQS-NQLSGKIP-LEVGLLTHLKVLHFQFNQLKLLVL 137 (214)
Q Consensus 96 ~~L~~L~ls~-N~l~g~~p-~~~~~l~~L~~L~l~~N~l~g~~p 137 (214)
++|..|-+-+ |+|+ .+| ..|+++.+|+.|.+.-|++.....
T Consensus 115 ~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLllNan~i~Cir~ 157 (498)
T KOG4237|consen 115 ASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLLLNANHINCIRQ 157 (498)
T ss_pred HhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHhcChhhhcchhH
Confidence 9988887666 9999 555 578999999999999998876543
No 10
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.81 E-value=2.7e-09 Score=61.78 Aligned_cols=37 Identities=38% Similarity=0.969 Sum_probs=27.0
Q ss_pred ChhhhhhhhcccCCCCCCCCCCcCCC--CCCCCCCcCcccceeeeC
Q 035742 1 ADALLKWKASLQSHNRSLLPSWTNAT--TNVSSKICPCAWFGISCS 44 (214)
Q Consensus 1 ~~~l~~~~~~~~~~~~~~~~~W~~~~--~~~~~~~~~c~w~gv~c~ 44 (214)
++||++||.++.+++...+.+|. .+ .+ +|.|.||+|+
T Consensus 5 ~~aLl~~k~~l~~~~~~~l~~W~-~~~~~~------~C~W~GV~Cd 43 (43)
T PF08263_consen 5 RQALLAFKKSLNNDPSGVLSSWN-PSSDSD------PCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHCTT-SC-CCCTT---TT--S-------CCCSTTEEE-
T ss_pred HHHHHHHHHhcccccCcccccCC-CcCCCC------CeeeccEEeC
Confidence 47999999999976567899994 43 56 9999999995
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.76 E-value=1.1e-09 Score=94.64 Aligned_cols=90 Identities=21% Similarity=0.147 Sum_probs=52.6
Q ss_pred CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhc
Q 035742 48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF 127 (214)
Q Consensus 48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l 127 (214)
.|+.|+|+.|.|....+ ..+...++|++|+|++|+++..-+.+|..+..|+.|+|++|.+...--..|..+++|+.|||
T Consensus 294 ~L~~L~lS~NaI~rih~-d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdL 372 (873)
T KOG4194|consen 294 SLEQLDLSYNAIQRIHI-DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDL 372 (873)
T ss_pred hhhhhccchhhhheeec-chhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcC
Confidence 34455555555554434 45555555556666666655444555555555566666666555333344666777777777
Q ss_pred ccccceeecch
Q 035742 128 QFNQLKLLVLV 138 (214)
Q Consensus 128 ~~N~l~g~~p~ 138 (214)
++|.+++.|-+
T Consensus 373 r~N~ls~~IED 383 (873)
T KOG4194|consen 373 RSNELSWCIED 383 (873)
T ss_pred cCCeEEEEEec
Confidence 77777776654
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.73 E-value=2.1e-09 Score=89.27 Aligned_cols=105 Identities=22% Similarity=0.270 Sum_probs=61.3
Q ss_pred CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhh
Q 035742 47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH 126 (214)
Q Consensus 47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~ 126 (214)
.+++.|+|++|-+. .+| .+++.+..|+.|+++.|+|. .+|..+..+..++.+-.++|++....|..+.++.+|.+||
T Consensus 435 ~kLt~L~L~NN~Ln-~LP-~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLD 511 (565)
T KOG0472|consen 435 QKLTFLDLSNNLLN-DLP-EEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLD 511 (565)
T ss_pred hcceeeecccchhh-hcc-hhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceec
Confidence 46777777777766 777 77777777888888877775 5555544444444444444444422222355555555555
Q ss_pred cccccceeecchhhhhcCCCCchhhhhh
Q 035742 127 FQFNQLKLLVLVLEVIKGKHPRDFLCSI 154 (214)
Q Consensus 127 l~~N~l~g~~p~~~~l~g~~p~~~~~~~ 154 (214)
+.+|.+...+|.+..++...-.++..|.
T Consensus 512 L~nNdlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 512 LQNNDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred cCCCchhhCChhhccccceeEEEecCCc
Confidence 5555555555555555544444444443
No 13
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.69 E-value=2.3e-08 Score=75.58 Aligned_cols=82 Identities=27% Similarity=0.374 Sum_probs=24.6
Q ss_pred CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhh-hCCcccceeeccccccccC-CCccccccccchhh
Q 035742 48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLSGK-IPLEVGLLTHLKVL 125 (214)
Q Consensus 48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~ls~N~l~g~-~p~~~~~l~~L~~L 125 (214)
+++.|+|++|.|+ .+. .+..++.|+.|++++|.++ .+.+.+ ..+++|+.|++++|+|... .-..+..+++|+.|
T Consensus 43 ~L~~L~Ls~N~I~-~l~--~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 43 KLEVLDLSNNQIT-KLE--GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp T--EEE-TTS--S---T--T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred CCCEEECCCCCCc-ccc--CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence 4555566666555 333 3555555666666666555 233233 2455566666666655421 11234445555555
Q ss_pred hcccccce
Q 035742 126 HFQFNQLK 133 (214)
Q Consensus 126 ~l~~N~l~ 133 (214)
++.+|.++
T Consensus 119 ~L~~NPv~ 126 (175)
T PF14580_consen 119 SLEGNPVC 126 (175)
T ss_dssp E-TT-GGG
T ss_pred eccCCccc
Confidence 55555554
No 14
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.65 E-value=1.6e-08 Score=76.41 Aligned_cols=81 Identities=25% Similarity=0.378 Sum_probs=29.9
Q ss_pred CeEEEEecCCCCccccCccccC-CCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccc-cccccchhh
Q 035742 48 RVINISLRNTGLSGTLSDFSFS-SFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEV-GLLTHLKVL 125 (214)
Q Consensus 48 ~L~~L~L~~n~l~g~~p~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~-~~l~~L~~L 125 (214)
+++.|+|++|.|+ .+. .++ .+.+|+.|++++|.++ .++ .+..+++|+.|++++|+++ .+...+ ..+++|+.|
T Consensus 20 ~~~~L~L~~n~I~-~Ie--~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 20 KLRELNLRGNQIS-TIE--NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred ccccccccccccc-ccc--chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence 5799999999998 554 565 6899999999999998 444 6788999999999999999 565545 468999999
Q ss_pred hccccccee
Q 035742 126 HFQFNQLKL 134 (214)
Q Consensus 126 ~l~~N~l~g 134 (214)
++++|++..
T Consensus 94 ~L~~N~I~~ 102 (175)
T PF14580_consen 94 YLSNNKISD 102 (175)
T ss_dssp E-TTS---S
T ss_pred ECcCCcCCC
Confidence 999999974
No 15
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.63 E-value=1.1e-08 Score=89.65 Aligned_cols=93 Identities=23% Similarity=0.323 Sum_probs=56.9
Q ss_pred CeEEEEecCCCCcc-ccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCcc-ccccccchhh
Q 035742 48 RVINISLRNTGLSG-TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLE-VGLLTHLKVL 125 (214)
Q Consensus 48 ~L~~L~L~~n~l~g-~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~-~~~l~~L~~L 125 (214)
.|+++.+..|+++. .+| ..+..+..|+.||||+|++. ..|..+....++-.|+||+|+|. .||.. |.+++.|-+|
T Consensus 79 ~LRsv~~R~N~LKnsGiP-~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 79 RLRSVIVRDNNLKNSGIP-TDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFL 155 (1255)
T ss_pred hhHHHhhhccccccCCCC-chhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhh
Confidence 45555556665542 255 56666666666666666666 56666666666666666666666 55533 4566666666
Q ss_pred hcccccceeecchhhhhc
Q 035742 126 HFQFNQLKLLVLVLEVIK 143 (214)
Q Consensus 126 ~l~~N~l~g~~p~~~~l~ 143 (214)
||++|++...+|....+.
T Consensus 156 DLS~NrLe~LPPQ~RRL~ 173 (1255)
T KOG0444|consen 156 DLSNNRLEMLPPQIRRLS 173 (1255)
T ss_pred ccccchhhhcCHHHHHHh
Confidence 666666666666544443
No 16
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.61 E-value=5.1e-09 Score=87.05 Aligned_cols=96 Identities=24% Similarity=0.278 Sum_probs=83.5
Q ss_pred CcccceeeeCCC---------------CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccc
Q 035742 35 PCAWFGISCSDA---------------GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLS 99 (214)
Q Consensus 35 ~c~w~gv~c~~~---------------~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 99 (214)
-|.+.-.+|-+. ..|+.|+++.|+|. .+| ..+..+..++.+-.++|++...-|..+.++.+|.
T Consensus 431 l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr-~lP-~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~ 508 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFR-MLP-ECLYELQTLETLLASNNQIGSVDPSGLKNMRNLT 508 (565)
T ss_pred HHhhhcceeeecccchhhhcchhhhhhhhhheecccccccc-cch-HHHhhHHHHHHHHhccccccccChHHhhhhhhcc
Confidence 677777777531 26899999999998 889 7777778888888888999856666699999999
Q ss_pred eeeccccccccCCCccccccccchhhhcccccce
Q 035742 100 YISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLK 133 (214)
Q Consensus 100 ~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~ 133 (214)
.||+.+|.+. .+|+.++++++|++|++.+|.|+
T Consensus 509 tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 509 TLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred eeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 9999999999 99999999999999999999998
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.58 E-value=6.9e-09 Score=93.73 Aligned_cols=86 Identities=29% Similarity=0.425 Sum_probs=78.8
Q ss_pred CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhh
Q 035742 46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL 125 (214)
Q Consensus 46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L 125 (214)
..+|+.|+|++|.|. .+|+..+.++..|+.|+||+|.++ .+|..+.++..|++|...+|++. .+| .+.+++.|+++
T Consensus 382 ~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~l 457 (1081)
T KOG0618|consen 382 FKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVL 457 (1081)
T ss_pred ccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEE
Confidence 348999999999998 888778999999999999999998 89999999999999999999998 888 78999999999
Q ss_pred hcccccceee
Q 035742 126 HFQFNQLKLL 135 (214)
Q Consensus 126 ~l~~N~l~g~ 135 (214)
|++.|+++..
T Consensus 458 DlS~N~L~~~ 467 (1081)
T KOG0618|consen 458 DLSCNNLSEV 467 (1081)
T ss_pred ecccchhhhh
Confidence 9999998753
No 18
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.55 E-value=1.4e-08 Score=88.04 Aligned_cols=87 Identities=20% Similarity=0.201 Sum_probs=70.4
Q ss_pred CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhh
Q 035742 47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH 126 (214)
Q Consensus 47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~ 126 (214)
.+++.|+|+.|+++..-. ..+.+++.|+.|++++|.|...-+..+...++|++|+|++|+++...+..|..+..|++|+
T Consensus 269 ~kme~l~L~~N~l~~vn~-g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~Ln 347 (873)
T KOG4194|consen 269 EKMEHLNLETNRLQAVNE-GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELN 347 (873)
T ss_pred cccceeecccchhhhhhc-ccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhc
Confidence 367888888888884434 7788888888888888888878888888888888888888888855666788888888888
Q ss_pred ccccccee
Q 035742 127 FQFNQLKL 134 (214)
Q Consensus 127 l~~N~l~g 134 (214)
|++|.+..
T Consensus 348 Ls~Nsi~~ 355 (873)
T KOG4194|consen 348 LSHNSIDH 355 (873)
T ss_pred ccccchHH
Confidence 88888764
No 19
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.49 E-value=4e-08 Score=86.13 Aligned_cols=83 Identities=25% Similarity=0.394 Sum_probs=71.2
Q ss_pred CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhh-hhCCcccceeeccccccccCCCccccccccchhh
Q 035742 47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQ-IGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL 125 (214)
Q Consensus 47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L 125 (214)
..|+.|||++|.++ ..| ..+....++-.|+||+|+|. .+|.. +.+++.|-+||||+|++. .+|+.+..+..|++|
T Consensus 103 ~dLt~lDLShNqL~-EvP-~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 103 KDLTILDLSHNQLR-EVP-TNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTL 178 (1255)
T ss_pred ccceeeecchhhhh-hcc-hhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhh
Confidence 46888999999998 888 88888889999999999998 66655 668899999999999998 888888999999999
Q ss_pred hcccccce
Q 035742 126 HFQFNQLK 133 (214)
Q Consensus 126 ~l~~N~l~ 133 (214)
.|++|.+.
T Consensus 179 ~Ls~NPL~ 186 (1255)
T KOG0444|consen 179 KLSNNPLN 186 (1255)
T ss_pred hcCCChhh
Confidence 99999764
No 20
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.34 E-value=6.7e-08 Score=83.56 Aligned_cols=87 Identities=26% Similarity=0.418 Sum_probs=63.7
Q ss_pred EEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhccccc
Q 035742 52 ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQ 131 (214)
Q Consensus 52 L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~ 131 (214)
+.|..|.+. .+| ..+.++..|++|+|+.|+++ .+|..+..|+ |+.|.+++|+++ .+|..++.+..|..|+.+.|+
T Consensus 103 liLy~n~~r-~ip-~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~ne 177 (722)
T KOG0532|consen 103 LILYHNCIR-TIP-EAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNE 177 (722)
T ss_pred HHHHhccce-ecc-hhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhh
Confidence 344445554 566 66777788888888888887 7777777777 788888888887 788888877788888888888
Q ss_pred ceeecchhhhhc
Q 035742 132 LKLLVLVLEVIK 143 (214)
Q Consensus 132 l~g~~p~~~~l~ 143 (214)
+...++.+..+.
T Consensus 178 i~slpsql~~l~ 189 (722)
T KOG0532|consen 178 IQSLPSQLGYLT 189 (722)
T ss_pred hhhchHHhhhHH
Confidence 877666544443
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.33 E-value=3.1e-07 Score=83.85 Aligned_cols=61 Identities=26% Similarity=0.266 Sum_probs=40.4
Q ss_pred CCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhcccccceeecch
Q 035742 73 QLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVLV 138 (214)
Q Consensus 73 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~ 138 (214)
+|+.|++++|.++ .+|.. ..+|+.|++++|+|+ .+|..+.++++|+.|+|++|+|++.+|.
T Consensus 403 ~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 403 ELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred CCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 4555555555555 34432 234666777777777 6777777788888888888888877654
No 22
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.31 E-value=1.4e-07 Score=67.89 Aligned_cols=84 Identities=24% Similarity=0.386 Sum_probs=68.4
Q ss_pred CCCeEEEEecCCCCccccCccccC-CCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchh
Q 035742 46 AGRVINISLRNTGLSGTLSDFSFS-SFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKV 124 (214)
Q Consensus 46 ~~~L~~L~L~~n~l~g~~p~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~ 124 (214)
.-+|+.++|++|.+. .+| +.|. .++.++.|++++|.++ .+|.++..++.|+.++++.|.|. ..|.-+..+.+|..
T Consensus 52 ~~el~~i~ls~N~fk-~fp-~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 52 GYELTKISLSDNGFK-KFP-KKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDM 127 (177)
T ss_pred CceEEEEecccchhh-hCC-HHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHH
Confidence 346788889999888 777 5554 4568888999999988 78888888999999999999888 78888888888888
Q ss_pred hhcccccce
Q 035742 125 LHFQFNQLK 133 (214)
Q Consensus 125 L~l~~N~l~ 133 (214)
|+..+|.+.
T Consensus 128 Lds~~na~~ 136 (177)
T KOG4579|consen 128 LDSPENARA 136 (177)
T ss_pred hcCCCCccc
Confidence 888888765
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.26 E-value=2.5e-07 Score=76.93 Aligned_cols=86 Identities=22% Similarity=0.211 Sum_probs=55.6
Q ss_pred CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhh
Q 035742 47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH 126 (214)
Q Consensus 47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~ 126 (214)
.+|+.|+|++|.|++.-+ .+|.++..++.|.|..|++...-...|.++..|+.|+|.+|+|+-.-|..|..+.+|.+|+
T Consensus 274 ~~L~~lnlsnN~i~~i~~-~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~ 352 (498)
T KOG4237|consen 274 PNLRKLNLSNNKITRIED-GAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLN 352 (498)
T ss_pred ccceEeccCCCccchhhh-hhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeee
Confidence 466666777777664444 6666677777777777766644444566666677777777777656666666666666666
Q ss_pred cccccce
Q 035742 127 FQFNQLK 133 (214)
Q Consensus 127 l~~N~l~ 133 (214)
|-.|.|.
T Consensus 353 l~~Np~~ 359 (498)
T KOG4237|consen 353 LLSNPFN 359 (498)
T ss_pred hccCccc
Confidence 6666553
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.26 E-value=1.4e-07 Score=85.44 Aligned_cols=100 Identities=26% Similarity=0.485 Sum_probs=85.9
Q ss_pred CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhc
Q 035742 48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF 127 (214)
Q Consensus 48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l 127 (214)
+|.+|++++|.+. ..| ..+..+..|+.|+++.|-+. ..|.+..++.+|+++.|..|++. .+|.++..+.+|++|++
T Consensus 46 ~L~~l~lsnn~~~-~fp-~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-SFP-IQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDL 121 (1081)
T ss_pred eeEEeeccccccc-cCC-chhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhccccccc
Confidence 4899999999987 888 88999999999999999998 88899999999999999999998 99999999999999999
Q ss_pred ccccceeecchhhhhcCCCCchhh
Q 035742 128 QFNQLKLLVLVLEVIKGKHPRDFL 151 (214)
Q Consensus 128 ~~N~l~g~~p~~~~l~g~~p~~~~ 151 (214)
+.|+|.-.++.++.++-..-..++
T Consensus 122 S~N~f~~~Pl~i~~lt~~~~~~~s 145 (1081)
T KOG0618|consen 122 SFNHFGPIPLVIEVLTAEEELAAS 145 (1081)
T ss_pred chhccCCCchhHHhhhHHHHHhhh
Confidence 999998666655544443333333
No 25
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.24 E-value=1e-06 Score=51.09 Aligned_cols=36 Identities=36% Similarity=0.575 Sum_probs=17.1
Q ss_pred CCcEEeCcCCcCcCCChhhhhCCcccceeeccccccc
Q 035742 73 QLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLS 109 (214)
Q Consensus 73 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 109 (214)
+|++|++++|+|+ .+|+.++++++|+.|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3455555555554 34444555555555555555544
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.15 E-value=3.8e-07 Score=73.65 Aligned_cols=57 Identities=25% Similarity=0.361 Sum_probs=31.7
Q ss_pred eEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccc
Q 035742 49 VINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLS 109 (214)
Q Consensus 49 L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 109 (214)
|+.+||++|.|+ .+. ++..-++.++.|++++|.+. .+ ..+..+++|+.||||+|.++
T Consensus 286 LtelDLS~N~I~-~iD-ESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 286 LTELDLSGNLIT-QID-ESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA 342 (490)
T ss_pred hhhccccccchh-hhh-hhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH
Confidence 555666666655 444 55555556666666666554 22 23555556666666666554
No 27
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.14 E-value=8.8e-07 Score=51.32 Aligned_cols=39 Identities=26% Similarity=0.455 Sum_probs=33.6
Q ss_pred cccceeeccccccccCCCccccccccchhhhcccccceee
Q 035742 96 SKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLL 135 (214)
Q Consensus 96 ~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~ 135 (214)
++|++|++++|+|+ .+|..++++++|+.|++++|+++..
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCC
Confidence 47999999999999 7888899999999999999999843
No 28
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.14 E-value=3.1e-06 Score=77.50 Aligned_cols=79 Identities=22% Similarity=0.385 Sum_probs=54.3
Q ss_pred CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhh
Q 035742 47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH 126 (214)
Q Consensus 47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~ 126 (214)
.+|+.|++++|.++ .+| ..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|.|+ .+|..+. ..|+.|+
T Consensus 325 ~sL~~L~Ls~N~Lt-~LP-~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~Ld 394 (754)
T PRK15370 325 PGLKTLEAGENALT-SLP-ASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQ 394 (754)
T ss_pred ccceeccccCCccc-cCC-hhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHh
Confidence 35777777777776 466 4443 57788888888776 5665553 57788888888887 5666553 3577888
Q ss_pred cccccceee
Q 035742 127 FQFNQLKLL 135 (214)
Q Consensus 127 l~~N~l~g~ 135 (214)
+++|+|++.
T Consensus 395 Ls~N~L~~L 403 (754)
T PRK15370 395 ASRNNLVRL 403 (754)
T ss_pred hccCCcccC
Confidence 888887744
No 29
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.07 E-value=5.2e-06 Score=76.03 Aligned_cols=13 Identities=15% Similarity=0.340 Sum_probs=6.8
Q ss_pred CeEEEEecCCCCc
Q 035742 48 RVINISLRNTGLS 60 (214)
Q Consensus 48 ~L~~L~L~~n~l~ 60 (214)
+|+.|+|++|.|+
T Consensus 343 ~Lq~LdLS~N~Ls 355 (788)
T PRK15387 343 GLQELSVSDNQLA 355 (788)
T ss_pred ccceEecCCCccC
Confidence 3455555555554
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.04 E-value=2.8e-06 Score=72.33 Aligned_cols=88 Identities=26% Similarity=0.348 Sum_probs=68.8
Q ss_pred CCeEEEEecCCCCccccCccccCCCC-CCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhh
Q 035742 47 GRVINISLRNTGLSGTLSDFSFSSFP-QLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL 125 (214)
Q Consensus 47 ~~L~~L~L~~n~l~g~~p~~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L 125 (214)
..++.|++.+|.++ .++ +....+. +|+.|++++|.+. .+|..+..++.|+.|++++|+++ .+|...+.++.|+.|
T Consensus 116 ~~l~~L~l~~n~i~-~i~-~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L 191 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIP-PLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL 191 (394)
T ss_pred cceeEEecCCcccc-cCc-cccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence 46788888888888 677 6666664 8888888888887 67677888888888888888888 777766677888888
Q ss_pred hcccccceeecch
Q 035742 126 HFQFNQLKLLVLV 138 (214)
Q Consensus 126 ~l~~N~l~g~~p~ 138 (214)
++++|+++-..+.
T Consensus 192 ~ls~N~i~~l~~~ 204 (394)
T COG4886 192 DLSGNKISDLPPE 204 (394)
T ss_pred eccCCccccCchh
Confidence 8888888765554
No 31
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.04 E-value=5.5e-06 Score=75.91 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=17.6
Q ss_pred ccceeeccccccccCCCccccccccchhhhccccccee
Q 035742 97 KLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKL 134 (214)
Q Consensus 97 ~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g 134 (214)
+|+.|++++|+++ .+|..+. .+|+.|++++|+|++
T Consensus 263 ~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~ 297 (754)
T PRK15370 263 ALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT 297 (754)
T ss_pred CCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc
Confidence 4555555555555 3444332 245555555555543
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.02 E-value=2.3e-06 Score=72.92 Aligned_cols=97 Identities=28% Similarity=0.464 Sum_probs=80.6
Q ss_pred CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhc
Q 035742 48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF 127 (214)
Q Consensus 48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l 127 (214)
+|+.|++++|.+. .+| ..+..++.|+.|++++|++. .+|...+.++.|+.|++++|+++ .+|..+.....|+++.+
T Consensus 141 nL~~L~l~~N~i~-~l~-~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~ 216 (394)
T COG4886 141 NLKELDLSDNKIE-SLP-SPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDL 216 (394)
T ss_pred hcccccccccchh-hhh-hhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhh
Confidence 7999999999998 776 68999999999999999998 78877779999999999999999 88887777778999999
Q ss_pred ccccceeecchhhhhcCCCCc
Q 035742 128 QFNQLKLLVLVLEVIKGKHPR 148 (214)
Q Consensus 128 ~~N~l~g~~p~~~~l~g~~p~ 148 (214)
++|.+...+..+..+....+.
T Consensus 217 ~~N~~~~~~~~~~~~~~l~~l 237 (394)
T COG4886 217 SNNSIIELLSSLSNLKNLSGL 237 (394)
T ss_pred cCCcceecchhhhhccccccc
Confidence 999655555544444433333
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.96 E-value=2.4e-06 Score=70.28 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=16.3
Q ss_pred CCCcEEeCcCCcCcCC----ChhhhhCCcccceeeccccccc
Q 035742 72 PQLVHLDLSLNGFLGT----IPSQIGNLSKLSYISLQSNQLS 109 (214)
Q Consensus 72 ~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~ 109 (214)
++|+.|++++|.+++. ++..+..+++|+.|++++|.++
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 4445555555544421 1222333344444444444444
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.95 E-value=2.9e-06 Score=68.66 Aligned_cols=90 Identities=23% Similarity=0.235 Sum_probs=62.8
Q ss_pred cceeeeCC-----CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCC
Q 035742 38 WFGISCSD-----AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKI 112 (214)
Q Consensus 38 w~gv~c~~-----~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~ 112 (214)
+.-++|.+ ...++.|++++|+|. .+. .+..+++|+.|||++|.++ .+...-..+.+.+.|.|+.|.+. .+
T Consensus 293 ~N~I~~iDESvKL~Pkir~L~lS~N~i~-~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~L 367 (490)
T KOG1259|consen 293 GNLITQIDESVKLAPKLRRLILSQNRIR-TVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-TL 367 (490)
T ss_pred ccchhhhhhhhhhccceeEEecccccee-eeh--hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-hh
Confidence 34456643 347999999999998 554 5899999999999999987 44444445666667777777664 22
Q ss_pred Cccccccccchhhhcccccce
Q 035742 113 PLEVGLLTHLKVLHFQFNQLK 133 (214)
Q Consensus 113 p~~~~~l~~L~~L~l~~N~l~ 133 (214)
..++++-+|..||+++|++.
T Consensus 368 -SGL~KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 368 -SGLRKLYSLVNLDLSSNQIE 387 (490)
T ss_pred -hhhHhhhhheeccccccchh
Confidence 33556666666777777664
No 35
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.93 E-value=1.3e-05 Score=77.10 Aligned_cols=81 Identities=19% Similarity=0.270 Sum_probs=43.5
Q ss_pred CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhc
Q 035742 48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF 127 (214)
Q Consensus 48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l 127 (214)
+|+.|++.+|.+. .++ ..+..+++|+.|+++++...+.+| .+..+++|+.|++++|.....+|..++++++|+.|++
T Consensus 612 ~L~~L~L~~s~l~-~L~-~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 612 NLVKLQMQGSKLE-KLW-DGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred CCcEEECcCcccc-ccc-cccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 4555666655555 444 445555566666665544333444 3555555555555555443455555555555555555
Q ss_pred cccc
Q 035742 128 QFNQ 131 (214)
Q Consensus 128 ~~N~ 131 (214)
++|.
T Consensus 689 ~~c~ 692 (1153)
T PLN03210 689 SRCE 692 (1153)
T ss_pred CCCC
Confidence 5543
No 36
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.92 E-value=1.6e-05 Score=76.63 Aligned_cols=95 Identities=23% Similarity=0.215 Sum_probs=72.3
Q ss_pred cceeeeCCCCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCcccc
Q 035742 38 WFGISCSDAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVG 117 (214)
Q Consensus 38 w~gv~c~~~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~ 117 (214)
|.|+.+ ..+|+.|+|+++...+.+| .+..+++|+.|++++|.....+|..+.++++|+.|++++|..-..+|..+
T Consensus 627 ~~~~~~--l~~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i- 701 (1153)
T PLN03210 627 WDGVHS--LTGLRNIDLRGSKNLKEIP--DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI- 701 (1153)
T ss_pred cccccc--CCCCCEEECCCCCCcCcCC--ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-
Confidence 555532 3579999999876555777 58889999999999987667899999999999999999875545788765
Q ss_pred ccccchhhhcccccceeecc
Q 035742 118 LLTHLKVLHFQFNQLKLLVL 137 (214)
Q Consensus 118 ~l~~L~~L~l~~N~l~g~~p 137 (214)
++++|+.|++++|...+.+|
T Consensus 702 ~l~sL~~L~Lsgc~~L~~~p 721 (1153)
T PLN03210 702 NLKSLYRLNLSGCSRLKSFP 721 (1153)
T ss_pred CCCCCCEEeCCCCCCccccc
Confidence 67777777777765444443
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.88 E-value=2.4e-06 Score=74.21 Aligned_cols=36 Identities=28% Similarity=0.523 Sum_probs=20.2
Q ss_pred cceeeccccccccCCCccccccccchhhhccccccee
Q 035742 98 LSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKL 134 (214)
Q Consensus 98 L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g 134 (214)
|..||++.|+++ .+|..|.+|+.|++|-|.+|.+..
T Consensus 213 Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 213 LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence 345555555555 555555555556655555555543
No 38
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.86 E-value=2.8e-06 Score=69.92 Aligned_cols=88 Identities=20% Similarity=0.239 Sum_probs=63.5
Q ss_pred CCCeEEEEecCCCCccccCccccCCCCC---CcEEeCcCCcCcC----CChhhhhCC-cccceeeccccccccC----CC
Q 035742 46 AGRVINISLRNTGLSGTLSDFSFSSFPQ---LVHLDLSLNGFLG----TIPSQIGNL-SKLSYISLQSNQLSGK----IP 113 (214)
Q Consensus 46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~---L~~L~l~~n~l~~----~~p~~~~~l-~~L~~L~ls~N~l~g~----~p 113 (214)
..+|+.|++++|.+.+..+ ..+..+.. |+.|++++|.+++ .+...+..+ ++|+.|++++|.+++. ++
T Consensus 80 ~~~L~~L~l~~~~~~~~~~-~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~ 158 (319)
T cd00116 80 GCGLQELDLSDNALGPDGC-GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA 158 (319)
T ss_pred cCceeEEEccCCCCChhHH-HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence 4578999999988875555 55555555 9999999988873 233445666 8889999999988743 23
Q ss_pred ccccccccchhhhccccccee
Q 035742 114 LEVGLLTHLKVLHFQFNQLKL 134 (214)
Q Consensus 114 ~~~~~l~~L~~L~l~~N~l~g 134 (214)
..+..+++|++|++++|.+++
T Consensus 159 ~~~~~~~~L~~L~l~~n~l~~ 179 (319)
T cd00116 159 KALRANRDLKELNLANNGIGD 179 (319)
T ss_pred HHHHhCCCcCEEECcCCCCch
Confidence 345566778888888888874
No 39
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.85 E-value=9.3e-07 Score=63.65 Aligned_cols=94 Identities=27% Similarity=0.443 Sum_probs=75.2
Q ss_pred eeCCCCCeEEEEecCCCCccccCc--cccCCCCCCcEEeCcCCcCcCCChhhhhC-CcccceeeccccccccCCCccccc
Q 035742 42 SCSDAGRVINISLRNTGLSGTLSD--FSFSSFPQLVHLDLSLNGFLGTIPSQIGN-LSKLSYISLQSNQLSGKIPLEVGL 118 (214)
Q Consensus 42 ~c~~~~~L~~L~L~~n~l~g~~p~--~~~~~l~~L~~L~l~~n~l~~~~p~~~~~-l~~L~~L~ls~N~l~g~~p~~~~~ 118 (214)
+|.+...+..++|+++.+- .+++ -.+.....|+.++|++|.+. .+|+.|.. .+.++.+++++|.++ .+|..+..
T Consensus 22 rcedakE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aa 98 (177)
T KOG4579|consen 22 RCEDAKELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAA 98 (177)
T ss_pred hhHHHHHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhh
Confidence 3655556788899998875 5551 23456677888899999998 67777765 458999999999999 99999999
Q ss_pred cccchhhhcccccceeecch
Q 035742 119 LTHLKVLHFQFNQLKLLVLV 138 (214)
Q Consensus 119 l~~L~~L~l~~N~l~g~~p~ 138 (214)
++.|+.|+++.|.|.-.+-.
T Consensus 99 m~aLr~lNl~~N~l~~~p~v 118 (177)
T KOG4579|consen 99 MPALRSLNLRFNPLNAEPRV 118 (177)
T ss_pred hHHhhhcccccCccccchHH
Confidence 99999999999999865543
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.82 E-value=9.5e-06 Score=75.55 Aligned_cols=89 Identities=30% Similarity=0.425 Sum_probs=76.6
Q ss_pred CCeEEEEecCCC--CccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchh
Q 035742 47 GRVINISLRNTG--LSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKV 124 (214)
Q Consensus 47 ~~L~~L~L~~n~--l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~ 124 (214)
..+++|-+..|. +. .++...|..++.|+.|||++|.=-+.+|..++.+-+|++|++++..++ .+|..++++..|.+
T Consensus 545 ~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY 622 (889)
T ss_pred CccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence 368999999996 55 555356888999999999998777799999999999999999999999 99999999999999
Q ss_pred hhcccccceeecc
Q 035742 125 LHFQFNQLKLLVL 137 (214)
Q Consensus 125 L~l~~N~l~g~~p 137 (214)
|++..+.....+|
T Consensus 623 Lnl~~~~~l~~~~ 635 (889)
T KOG4658|consen 623 LNLEVTGRLESIP 635 (889)
T ss_pred ecccccccccccc
Confidence 9999876544443
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.51 E-value=4.7e-05 Score=71.04 Aligned_cols=85 Identities=28% Similarity=0.325 Sum_probs=74.0
Q ss_pred CCCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchh
Q 035742 45 DAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKV 124 (214)
Q Consensus 45 ~~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~ 124 (214)
....|+.|||++|.=-+.+| ..++.|-+|++|++++..+. .+|..++++..|.+|++.++.....+|..+..+++|++
T Consensus 569 ~m~~LrVLDLs~~~~l~~LP-~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~ 646 (889)
T KOG4658|consen 569 SLPLLRVLDLSGNSSLSKLP-SSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRV 646 (889)
T ss_pred hCcceEEEECCCCCccCcCC-hHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccE
Confidence 35689999999987767899 99999999999999999998 99999999999999999988766566666677999999
Q ss_pred hhccccc
Q 035742 125 LHFQFNQ 131 (214)
Q Consensus 125 L~l~~N~ 131 (214)
|.+..-.
T Consensus 647 L~l~~s~ 653 (889)
T KOG4658|consen 647 LRLPRSA 653 (889)
T ss_pred EEeeccc
Confidence 8886544
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.46 E-value=7.1e-05 Score=64.38 Aligned_cols=85 Identities=24% Similarity=0.295 Sum_probs=57.8
Q ss_pred CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhh
Q 035742 47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH 126 (214)
Q Consensus 47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~ 126 (214)
.+++.|++..|.|. .+. ..+..+++|++|++++|.|+... .+..++.|+.|++++|.++ .+.. +..+..|+.++
T Consensus 95 ~~l~~l~l~~n~i~-~i~-~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~-~~~~-~~~l~~L~~l~ 168 (414)
T KOG0531|consen 95 KSLEALDLYDNKIE-KIE-NLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS-DISG-LESLKSLKLLD 168 (414)
T ss_pred cceeeeeccccchh-hcc-cchhhhhcchheecccccccccc--chhhccchhhheeccCcch-hccC-Cccchhhhccc
Confidence 46777888888887 444 23677888888888888886332 3555666778888888776 4332 45567777777
Q ss_pred cccccceeecc
Q 035742 127 FQFNQLKLLVL 137 (214)
Q Consensus 127 l~~N~l~g~~p 137 (214)
+++|++...-+
T Consensus 169 l~~n~i~~ie~ 179 (414)
T KOG0531|consen 169 LSYNRIVDIEN 179 (414)
T ss_pred CCcchhhhhhh
Confidence 77777765444
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.30 E-value=2.6e-05 Score=69.83 Aligned_cols=80 Identities=24% Similarity=0.399 Sum_probs=45.7
Q ss_pred CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhh-hhCCcccceeeccccccccCCCccccccccchhh
Q 035742 47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQ-IGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL 125 (214)
Q Consensus 47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L 125 (214)
..++.|+|++|+++ .. ..+..++.|++|||++|.+. .+|.- ...+. |+.|.+.+|.++ .+ ..+.++.+|+.|
T Consensus 187 ~ale~LnLshNk~~-~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~-tL-~gie~LksL~~L 259 (1096)
T KOG1859|consen 187 PALESLNLSHNKFT-KV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALT-TL-RGIENLKSLYGL 259 (1096)
T ss_pred HHhhhhccchhhhh-hh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHH-hh-hhHHhhhhhhcc
Confidence 36778888888887 33 46778888888888888886 44431 22222 444444444443 11 223444445555
Q ss_pred hcccccce
Q 035742 126 HFQFNQLK 133 (214)
Q Consensus 126 ~l~~N~l~ 133 (214)
|++.|-++
T Consensus 260 DlsyNll~ 267 (1096)
T KOG1859|consen 260 DLSYNLLS 267 (1096)
T ss_pred chhHhhhh
Confidence 55555443
No 44
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.21 E-value=0.00032 Score=53.85 Aligned_cols=82 Identities=21% Similarity=0.216 Sum_probs=65.5
Q ss_pred CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCC--ccccccccchhh
Q 035742 48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIP--LEVGLLTHLKVL 125 (214)
Q Consensus 48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p--~~~~~l~~L~~L 125 (214)
....+||++|.+. .+ +.|..++.|..|.+.+|+|+..-|.--..+++|..|.+.+|.|. .+- .-+..++.|++|
T Consensus 43 ~~d~iDLtdNdl~-~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccceecccccchh-hc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCcccee
Confidence 4678999999987 54 47899999999999999999555544456788999999999987 332 235677889999
Q ss_pred hcccccce
Q 035742 126 HFQFNQLK 133 (214)
Q Consensus 126 ~l~~N~l~ 133 (214)
.+-+|..+
T Consensus 119 tll~Npv~ 126 (233)
T KOG1644|consen 119 TLLGNPVE 126 (233)
T ss_pred eecCCchh
Confidence 99999775
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.15 E-value=2.7e-05 Score=69.78 Aligned_cols=83 Identities=27% Similarity=0.349 Sum_probs=66.6
Q ss_pred CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhc
Q 035742 48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF 127 (214)
Q Consensus 48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l 127 (214)
.|...+.++|.+. .+. .++.-++.|+.|+|++|+++. .. .+..++.|++|||++|.+. .+|..-..-..|+.|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD-~SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMD-ESLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHH-HHHHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhc-cccccchhhhhheeeee
Confidence 4677788889887 666 888899999999999999973 33 7889999999999999998 77763222234999999
Q ss_pred ccccceee
Q 035742 128 QFNQLKLL 135 (214)
Q Consensus 128 ~~N~l~g~ 135 (214)
.+|.++..
T Consensus 240 rnN~l~tL 247 (1096)
T KOG1859|consen 240 RNNALTTL 247 (1096)
T ss_pred cccHHHhh
Confidence 99988753
No 46
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.98 E-value=0.00044 Score=54.85 Aligned_cols=83 Identities=25% Similarity=0.309 Sum_probs=65.1
Q ss_pred CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCC--cCcCCChhhhhCCcccceeeccccccccCCCcc---cccccc
Q 035742 47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLN--GFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLE---VGLLTH 121 (214)
Q Consensus 47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n--~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~---~~~l~~ 121 (214)
..+..+.+.+..++ ++ ..|..+++|+.|.++.| ++.+.++.-...+++|++++++.|++.- +.+ +..+.+
T Consensus 43 ~~le~ls~~n~glt-t~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~n 117 (260)
T KOG2739|consen 43 VELELLSVINVGLT-TL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELEN 117 (260)
T ss_pred cchhhhhhhcccee-ec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcc
Confidence 46777777777777 33 46888999999999999 7777777777778999999999999972 333 456677
Q ss_pred chhhhccccccee
Q 035742 122 LKVLHFQFNQLKL 134 (214)
Q Consensus 122 L~~L~l~~N~l~g 134 (214)
|..|++..+..+.
T Consensus 118 L~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 118 LKSLDLFNCSVTN 130 (260)
T ss_pred hhhhhcccCCccc
Confidence 8899998886654
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.95 E-value=0.00025 Score=61.02 Aligned_cols=82 Identities=23% Similarity=0.248 Sum_probs=65.9
Q ss_pred CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhc
Q 035742 48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF 127 (214)
Q Consensus 48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l 127 (214)
.+..+.+..|.++ .+- ..+..+.+|+.|++..|.|. .+...+..+++|++|++++|.|+...+ +..++.|+.|++
T Consensus 73 ~l~~l~l~~n~i~-~~~-~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l 147 (414)
T KOG0531|consen 73 SLKELNLRQNLIA-KIL-NHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNL 147 (414)
T ss_pred hHHhhccchhhhh-hhh-cccccccceeeeeccccchh-hcccchhhhhcchheeccccccccccc--hhhccchhhhee
Confidence 4556668888887 333 56889999999999999998 444447889999999999999984433 667788999999
Q ss_pred cccccee
Q 035742 128 QFNQLKL 134 (214)
Q Consensus 128 ~~N~l~g 134 (214)
++|.++.
T Consensus 148 ~~N~i~~ 154 (414)
T KOG0531|consen 148 SGNLISD 154 (414)
T ss_pred ccCcchh
Confidence 9999874
No 48
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.00025 Score=60.07 Aligned_cols=88 Identities=19% Similarity=0.149 Sum_probs=47.3
Q ss_pred CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCCh-hhhhCCcccceeeccccccccCCCccccccccchh
Q 035742 46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIP-SQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKV 124 (214)
Q Consensus 46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~ 124 (214)
..+|+.|+|+.|.+.-......-..+++|+.|.++.+.++..-- .....+++|+.|+|..|...+..-.....+..|+.
T Consensus 171 Lp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~ 250 (505)
T KOG3207|consen 171 LPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQE 250 (505)
T ss_pred cccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhh
Confidence 34555666666655422221112234555666666665552211 12334567777777777533333334455677888
Q ss_pred hhcccccce
Q 035742 125 LHFQFNQLK 133 (214)
Q Consensus 125 L~l~~N~l~ 133 (214)
|+|++|++-
T Consensus 251 LdLs~N~li 259 (505)
T KOG3207|consen 251 LDLSNNNLI 259 (505)
T ss_pred ccccCCccc
Confidence 888888764
No 49
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.80 E-value=4.2e-05 Score=59.90 Aligned_cols=84 Identities=24% Similarity=0.214 Sum_probs=76.5
Q ss_pred CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhh
Q 035742 46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL 125 (214)
Q Consensus 46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L 125 (214)
..+++.||++.|.+. .+. ..|+.++.|..|+++.|++. .+|..++.+..+..+++..|.++ ..|.+++.+++++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~-~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLG-KNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred cceeeeehhhhhHHH-hhc-cchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 457899999999987 666 78999999999999999998 89999999999999999999998 999999999999999
Q ss_pred hcccccce
Q 035742 126 HFQFNQLK 133 (214)
Q Consensus 126 ~l~~N~l~ 133 (214)
++-.|.|.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 99998864
No 50
>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=96.57 E-value=0.0034 Score=53.12 Aligned_cols=75 Identities=29% Similarity=0.509 Sum_probs=51.8
Q ss_pred hhhhhcCCCCchhhh--------hhcccccchhhhhhhhcCCCCCCCcchhHHHHHHHHHHhhcccCCCCCCCCCHHHHH
Q 035742 138 VLEVIKGKHPRDFLC--------SILSSSLTKDVALDEMLDPRLPTSSCSVQEKLISIMGVAFPCLNESPVSRPTMQTVS 209 (214)
Q Consensus 138 ~~~~l~g~~p~~~~~--------~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~~L~~l~~~~l~C~~~~p~~Rp~m~~V~ 209 (214)
.++.++|..+.+... .|. ........+.+++|+++..........+.++..+|+.|++.++..||+|.+|+
T Consensus 268 llElitgr~~~d~~~~~~~~~l~~w~-~~~~~~~~~~eiiD~~l~~~~~~~~~~~~~~~~~a~~C~~~~~~~RP~m~~Vv 346 (361)
T KOG1187|consen 268 LLELITGRKAVDQSRPRGELSLVEWA-KPLLEEGKLREIVDPRLKEGEYPDEKEVKKLAELALRCLRPDPKERPTMSQVV 346 (361)
T ss_pred HHHHHhCCcccCCCCCcccccHHHHH-HHHHHCcchhheeCCCccCCCCChHHHHHHHHHHHHHHcCcCCCcCcCHHHHH
Confidence 367888887666421 111 11122225678889888742222126778899999999999999999999999
Q ss_pred HHhc
Q 035742 210 QQLQ 213 (214)
Q Consensus 210 ~~L~ 213 (214)
++|+
T Consensus 347 ~~L~ 350 (361)
T KOG1187|consen 347 KELE 350 (361)
T ss_pred HHHH
Confidence 9985
No 51
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.00064 Score=57.71 Aligned_cols=84 Identities=20% Similarity=0.248 Sum_probs=43.3
Q ss_pred CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCCh--hhhhCCcccceeeccccccccC-CCcc-----cccc
Q 035742 48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIP--SQIGNLSKLSYISLQSNQLSGK-IPLE-----VGLL 119 (214)
Q Consensus 48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p--~~~~~l~~L~~L~ls~N~l~g~-~p~~-----~~~l 119 (214)
++..|+|.+|...+... .....+..|+.|||++|++- ..+ ...+.++.|+.|+++.+.+... +|+. ...+
T Consensus 223 sl~~L~L~~N~~~~~~~-~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f 300 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKA-TSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF 300 (505)
T ss_pred cHHHhhhhcccccceec-chhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhccc
Confidence 35555555553221222 33444556666666666654 233 3455566666666666665422 2322 2344
Q ss_pred ccchhhhcccccce
Q 035742 120 THLKVLHFQFNQLK 133 (214)
Q Consensus 120 ~~L~~L~l~~N~l~ 133 (214)
.+|++|++..|++.
T Consensus 301 ~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 301 PKLEYLNISENNIR 314 (505)
T ss_pred ccceeeecccCccc
Confidence 56667777766663
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.00096 Score=54.28 Aligned_cols=84 Identities=25% Similarity=0.255 Sum_probs=50.6
Q ss_pred CeEEEEecCCCCccc--cCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccC-CCccccccccchh
Q 035742 48 RVINISLRNTGLSGT--LSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGK-IPLEVGLLTHLKV 124 (214)
Q Consensus 48 ~L~~L~L~~n~l~g~--~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~-~p~~~~~l~~L~~ 124 (214)
+++.+||.+|.|+.. +. .-+..++.|+.|+++.|++...+-.....+.+|+.|-|.+..+.+. ....+..++.++.
T Consensus 72 ~v~elDL~~N~iSdWseI~-~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIG-AILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhcccchhccHHHHH-HHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 567777777777621 22 3345677778888887777633322223455677777766666543 2334456666777
Q ss_pred hhcccccc
Q 035742 125 LHFQFNQL 132 (214)
Q Consensus 125 L~l~~N~l 132 (214)
|+++.|++
T Consensus 151 lHmS~N~~ 158 (418)
T KOG2982|consen 151 LHMSDNSL 158 (418)
T ss_pred hhhccchh
Confidence 77777743
No 53
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.27 E-value=0.0014 Score=31.73 Aligned_cols=18 Identities=39% Similarity=0.737 Sum_probs=8.5
Q ss_pred cceeeccccccccCCCccc
Q 035742 98 LSYISLQSNQLSGKIPLEV 116 (214)
Q Consensus 98 L~~L~ls~N~l~g~~p~~~ 116 (214)
|++|++++|+|+ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444455555444 444443
No 54
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.17 E-value=0.00036 Score=56.16 Aligned_cols=86 Identities=23% Similarity=0.289 Sum_probs=38.5
Q ss_pred eCCCCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCC--ccccccc
Q 035742 43 CSDAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIP--LEVGLLT 120 (214)
Q Consensus 43 c~~~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p--~~~~~l~ 120 (214)
|++..++..|+.-+++|. .|. -...++.|+.|.|+-|.|+.. ..+..|++|++|+|..|.|. .+- ..+.+++
T Consensus 15 ~sdl~~vkKLNcwg~~L~-DIs--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlp 88 (388)
T KOG2123|consen 15 CSDLENVKKLNCWGCGLD-DIS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLP 88 (388)
T ss_pred hhHHHHhhhhcccCCCcc-HHH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCc
Confidence 333334445555555444 221 234455555555555555421 12444555555555555544 222 1234445
Q ss_pred cchhhhccccccee
Q 035742 121 HLKVLHFQFNQLKL 134 (214)
Q Consensus 121 ~L~~L~l~~N~l~g 134 (214)
+|+.|.|..|.-.|
T Consensus 89 sLr~LWL~ENPCc~ 102 (388)
T KOG2123|consen 89 SLRTLWLDENPCCG 102 (388)
T ss_pred hhhhHhhccCCccc
Confidence 55555555554433
No 55
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.10 E-value=0.002 Score=31.22 Aligned_cols=18 Identities=50% Similarity=0.589 Sum_probs=8.3
Q ss_pred CcEEeCcCCcCcCCChhhh
Q 035742 74 LVHLDLSLNGFLGTIPSQI 92 (214)
Q Consensus 74 L~~L~l~~n~l~~~~p~~~ 92 (214)
|++|++++|+++ .+|+.|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444445544444 444443
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.02 E-value=0.0045 Score=47.67 Aligned_cols=79 Identities=20% Similarity=0.305 Sum_probs=56.9
Q ss_pred EEEEecCCCCccccCccccC-CCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhcc
Q 035742 50 INISLRNTGLSGTLSDFSFS-SFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQ 128 (214)
Q Consensus 50 ~~L~L~~n~l~g~~p~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~ 128 (214)
++++|.+..+. .+. .++ -+.....+||++|.+. .-..|..+++|.+|.+++|+|+.+-|.--..+++|..|.+.
T Consensus 22 ~e~~LR~lkip-~ie--nlg~~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 22 RELDLRGLKIP-VIE--NLGATLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccccccccccc-chh--hccccccccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 56677766554 222 222 2346788999999985 33467789999999999999995555433445679999999
Q ss_pred cccce
Q 035742 129 FNQLK 133 (214)
Q Consensus 129 ~N~l~ 133 (214)
+|++.
T Consensus 97 nNsi~ 101 (233)
T KOG1644|consen 97 NNSIQ 101 (233)
T ss_pred Ccchh
Confidence 99876
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.68 E-value=0.006 Score=55.85 Aligned_cols=91 Identities=16% Similarity=0.160 Sum_probs=54.2
Q ss_pred eeeeCCCCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcC-CChhhhhCCcccceeeccccccccCCC-----
Q 035742 40 GISCSDAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLG-TIPSQIGNLSKLSYISLQSNQLSGKIP----- 113 (214)
Q Consensus 40 gv~c~~~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~ls~N~l~g~~p----- 113 (214)
..-|....+|.+||+++.+++ .+ ..++.+.+|+.|.+.+=.+.. ..-..+.+|++|+.||+|..... ..+
T Consensus 166 ~~lc~sFpNL~sLDIS~TnI~-nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~q 241 (699)
T KOG3665|consen 166 SQLCASFPNLRSLDISGTNIS-NL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQ 241 (699)
T ss_pred HHHhhccCccceeecCCCCcc-Cc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHH
Confidence 344555566777777777766 33 356666677666666555431 22235667777777777776654 222
Q ss_pred --ccccccccchhhhccccccee
Q 035742 114 --LEVGLLTHLKVLHFQFNQLKL 134 (214)
Q Consensus 114 --~~~~~l~~L~~L~l~~N~l~g 134 (214)
+.-..+++|++||.|++.+.+
T Consensus 242 Ylec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 242 YLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HHHhcccCccccEEecCCcchhH
Confidence 122346777777777766554
No 58
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.31 E-value=0.0019 Score=52.15 Aligned_cols=81 Identities=23% Similarity=0.286 Sum_probs=62.9
Q ss_pred eeCCCCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChh--hhhCCcccceeeccccccccCCCcc----
Q 035742 42 SCSDAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPS--QIGNLSKLSYISLQSNQLSGKIPLE---- 115 (214)
Q Consensus 42 ~c~~~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~ls~N~l~g~~p~~---- 115 (214)
.|..-..|+.|.|+-|.|+ .+ ..|..+++|+.|+|..|.|. .+.+ -+.++++|+.|+|..|.-.|.-+..
T Consensus 36 ic~kMp~lEVLsLSvNkIs-sL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~ 111 (388)
T KOG2123|consen 36 ICEKMPLLEVLSLSVNKIS-SL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRK 111 (388)
T ss_pred HHHhcccceeEEeeccccc-cc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccchhHHHH
Confidence 3555567999999999999 44 35899999999999999997 3433 3678999999999999988776653
Q ss_pred -ccccccchhhh
Q 035742 116 -VGLLTHLKVLH 126 (214)
Q Consensus 116 -~~~l~~L~~L~ 126 (214)
+.-|++|+.||
T Consensus 112 VLR~LPnLkKLD 123 (388)
T KOG2123|consen 112 VLRVLPNLKKLD 123 (388)
T ss_pred HHHHcccchhcc
Confidence 34456666664
No 59
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=94.95 E-value=0.0082 Score=49.75 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=16.4
Q ss_pred cccceeecccccccc----CCCccccccccchhhhcccccc
Q 035742 96 SKLSYISLQSNQLSG----KIPLEVGLLTHLKVLHFQFNQL 132 (214)
Q Consensus 96 ~~L~~L~ls~N~l~g----~~p~~~~~l~~L~~L~l~~N~l 132 (214)
++|+.+.+.+|.++- .+-..+...+.|..|+|++|.+
T Consensus 270 p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 270 PSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred CCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 445555555554431 0112233344555555555555
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.90 E-value=0.012 Score=46.81 Aligned_cols=66 Identities=27% Similarity=0.342 Sum_probs=50.2
Q ss_pred cccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeecccc--ccccCCCccccccccchhhhcccccce
Q 035742 66 FSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSN--QLSGKIPLEVGLLTHLKVLHFQFNQLK 133 (214)
Q Consensus 66 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N--~l~g~~p~~~~~l~~L~~L~l~~N~l~ 133 (214)
.-...+..|+.|.+.+..++ .+ ..+..+++|+.|.++.| .+.+.++.....+++|+++++++|++.
T Consensus 37 gl~d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 37 GLTDEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 44555667777777777665 11 24567889999999999 666667666677799999999999987
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.90 E-value=0.0094 Score=54.61 Aligned_cols=85 Identities=20% Similarity=0.275 Sum_probs=59.9
Q ss_pred CCCeEEEEecCCCCccc-cCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeecccccccc-CCCccccccccch
Q 035742 46 AGRVINISLRNTGLSGT-LSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSG-KIPLEVGLLTHLK 123 (214)
Q Consensus 46 ~~~L~~L~L~~n~l~g~-~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g-~~p~~~~~l~~L~ 123 (214)
..+|++|.+.+-.+... +. .-..++++|..||+|+.+++.. ..++++++|+.|.+.+=.|.. ..-..+.+|++|+
T Consensus 147 LPsL~sL~i~~~~~~~~dF~-~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFS-QLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred CcccceEEecCceecchhHH-HHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 34688888887766432 12 3456788999999999888733 678888888888877666652 1123467788999
Q ss_pred hhhcccccce
Q 035742 124 VLHFQFNQLK 133 (214)
Q Consensus 124 ~L~l~~N~l~ 133 (214)
.||+|.....
T Consensus 224 vLDIS~~~~~ 233 (699)
T KOG3665|consen 224 VLDISRDKNN 233 (699)
T ss_pred eeeccccccc
Confidence 9999876554
No 62
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.18 E-value=0.024 Score=25.53 Aligned_cols=11 Identities=36% Similarity=0.594 Sum_probs=3.3
Q ss_pred cceeecccccc
Q 035742 98 LSYISLQSNQL 108 (214)
Q Consensus 98 L~~L~ls~N~l 108 (214)
|+.|++++|+|
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 33444444443
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=93.82 E-value=0.1 Score=44.89 Aligned_cols=60 Identities=13% Similarity=0.242 Sum_probs=42.7
Q ss_pred CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCC-cCcCCChhhhhCCcccceeecccc-ccccCCCcc
Q 035742 47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLN-GFLGTIPSQIGNLSKLSYISLQSN-QLSGKIPLE 115 (214)
Q Consensus 47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~l~~L~~L~ls~N-~l~g~~p~~ 115 (214)
.+++.|+++++.|+ .+| . -..+|+.|.++++ .++ .+|..+ ..+|+.|++++| .+. .+|..
T Consensus 52 ~~l~~L~Is~c~L~-sLP-~---LP~sLtsL~Lsnc~nLt-sLP~~L--P~nLe~L~Ls~Cs~L~-sLP~s 113 (426)
T PRK15386 52 RASGRLYIKDCDIE-SLP-V---LPNELTEITIENCNNLT-TLPGSI--PEGLEKLTVCHCPEIS-GLPES 113 (426)
T ss_pred cCCCEEEeCCCCCc-ccC-C---CCCCCcEEEccCCCCcc-cCCchh--hhhhhheEccCccccc-ccccc
Confidence 46889999999888 666 2 2346999999874 443 666554 357889999888 554 66654
No 64
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.41 E-value=0.15 Score=25.34 Aligned_cols=14 Identities=50% Similarity=0.603 Sum_probs=6.9
Q ss_pred CCCcEEeCcCCcCc
Q 035742 72 PQLVHLDLSLNGFL 85 (214)
Q Consensus 72 ~~L~~L~l~~n~l~ 85 (214)
++|+.|++++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34455555555554
No 65
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.41 E-value=0.15 Score=25.34 Aligned_cols=14 Identities=50% Similarity=0.603 Sum_probs=6.9
Q ss_pred CCCcEEeCcCCcCc
Q 035742 72 PQLVHLDLSLNGFL 85 (214)
Q Consensus 72 ~~L~~L~l~~n~l~ 85 (214)
++|+.|++++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34455555555554
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.24 E-value=0.21 Score=35.01 Aligned_cols=79 Identities=18% Similarity=0.219 Sum_probs=46.5
Q ss_pred CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhc
Q 035742 48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF 127 (214)
Q Consensus 48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l 127 (214)
+|+.+.+.. .+. .++...|.+++.|+.+.+..+ +...-...|.++.+|+.+.+.. .+...-...|..+++|+.+++
T Consensus 13 ~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 13 NLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp T--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred CCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence 678888874 566 565477888888999998775 6534445677887888888865 443233455677888888888
Q ss_pred ccc
Q 035742 128 QFN 130 (214)
Q Consensus 128 ~~N 130 (214)
..|
T Consensus 89 ~~~ 91 (129)
T PF13306_consen 89 PSN 91 (129)
T ss_dssp TTT
T ss_pred Ccc
Confidence 665
No 67
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=91.36 E-value=0.1 Score=43.47 Aligned_cols=86 Identities=20% Similarity=0.278 Sum_probs=45.4
Q ss_pred CCeEEEEecCCCCccc----cCccccCCCCCCcEEeCcCCcCcC----CChhhhhCCcccceeeccccccccC----CCc
Q 035742 47 GRVINISLRNTGLSGT----LSDFSFSSFPQLVHLDLSLNGFLG----TIPSQIGNLSKLSYISLQSNQLSGK----IPL 114 (214)
Q Consensus 47 ~~L~~L~L~~n~l~g~----~p~~~~~~l~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~L~ls~N~l~g~----~p~ 114 (214)
..|+++....|.+... +. ..|...+.|+.+.+..|.|.. .+-..+..+++|+.|||..|.|+.. +..
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A-~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALA-EAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred cceEEEEeeccccccccHHHHH-HHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 4566666666665311 11 334455666666666665531 1223455666666666666666521 122
Q ss_pred cccccccchhhhcccccce
Q 035742 115 EVGLLTHLKVLHFQFNQLK 133 (214)
Q Consensus 115 ~~~~l~~L~~L~l~~N~l~ 133 (214)
.+..+++|+.++++++.++
T Consensus 236 aL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred Hhcccchheeecccccccc
Confidence 3444455666666665554
No 68
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.13 E-value=0.12 Score=42.54 Aligned_cols=70 Identities=21% Similarity=0.325 Sum_probs=51.5
Q ss_pred ccceeeeC--CCCCeEEEEecCCCCccccCcccc-CCCCCCcEEeCcCCcCcCCChh-hhhCCcccceeecccccc
Q 035742 37 AWFGISCS--DAGRVINISLRNTGLSGTLSDFSF-SSFPQLVHLDLSLNGFLGTIPS-QIGNLSKLSYISLQSNQL 108 (214)
Q Consensus 37 ~w~gv~c~--~~~~L~~L~L~~n~l~g~~p~~~~-~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~ls~N~l 108 (214)
.|+-|.|. ...+|+.|+|+.|.+...|. .+ ..+.+|+.|-|.+..+....-. .+..++.++.|+++.|.+
T Consensus 85 dWseI~~ile~lP~l~~LNls~N~L~s~I~--~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 85 DWSEIGAILEQLPALTTLNLSCNSLSSDIK--SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred cHHHHHHHHhcCccceEeeccCCcCCCccc--cCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 47766654 67799999999999985554 23 4567889999988887654443 456788888888888843
No 69
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=90.95 E-value=0.085 Score=42.76 Aligned_cols=84 Identities=17% Similarity=0.270 Sum_probs=39.3
Q ss_pred CCeEEEEecCCCCccccCc---cccCCCCCCcEEeCcCCcCcCC----Ch-------hhhhCCcccceeeccccccccCC
Q 035742 47 GRVINISLRNTGLSGTLSD---FSFSSFPQLVHLDLSLNGFLGT----IP-------SQIGNLSKLSYISLQSNQLSGKI 112 (214)
Q Consensus 47 ~~L~~L~L~~n~l~g~~p~---~~~~~l~~L~~L~l~~n~l~~~----~p-------~~~~~l~~L~~L~ls~N~l~g~~ 112 (214)
..++.++|++|.|...-.. ..+.+-.+|+..+++.- ++|. ++ +.+..|++|+..+||.|-|....
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 3567777777776522110 22333444555554432 1111 11 23334555566666666555444
Q ss_pred Ccc----ccccccchhhhccccc
Q 035742 113 PLE----VGLLTHLKVLHFQFNQ 131 (214)
Q Consensus 113 p~~----~~~l~~L~~L~l~~N~ 131 (214)
|+. +++-+.|.+|.+++|.
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCC
Confidence 433 2333455555555553
No 70
>PRK15386 type III secretion protein GogB; Provisional
Probab=89.75 E-value=0.26 Score=42.41 Aligned_cols=61 Identities=15% Similarity=0.158 Sum_probs=43.5
Q ss_pred ccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccc-cccccCCCccccccccchhhhcccc-ccee
Q 035742 67 SFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQS-NQLSGKIPLEVGLLTHLKVLHFQFN-QLKL 134 (214)
Q Consensus 67 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~-N~l~g~~p~~~~~l~~L~~L~l~~N-~l~g 134 (214)
.+..+.+++.|++++|.+. .+| .-..+|+.|.+++ +.++ .+|..+. .+|+.|++++| .+..
T Consensus 47 r~~~~~~l~~L~Is~c~L~-sLP---~LP~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~Cs~L~s 109 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIE-SLP---VLPNELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHCPEISG 109 (426)
T ss_pred HHHHhcCCCEEEeCCCCCc-ccC---CCCCCCcEEEccCCCCcc-cCCchhh--hhhhheEccCcccccc
Confidence 3445688999999999887 667 2334699999987 4554 6776542 57888888887 5544
No 71
>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer
Probab=88.88 E-value=0.5 Score=37.77 Aligned_cols=31 Identities=26% Similarity=0.640 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742 181 QEKLISIMGVAFPCLNESPVSRPTMQTVSQQLQI 214 (214)
Q Consensus 181 ~~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~~ 214 (214)
+..+.+++ ..|...+|.+||++++|.+.|++
T Consensus 252 ~~~~~~l~---~~c~~~~p~~Rp~~~~i~~~l~~ 282 (283)
T cd05048 252 PARVYALM---IECWNEIPARRPRFKDIHTRLRS 282 (283)
T ss_pred CHHHHHHH---HHHccCChhhCcCHHHHHHHHhc
Confidence 34444444 44999999999999999999974
No 72
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.50 E-value=0.022 Score=45.05 Aligned_cols=73 Identities=19% Similarity=0.209 Sum_probs=60.8
Q ss_pred ccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhcccccceeec
Q 035742 62 TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLV 136 (214)
Q Consensus 62 ~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~ 136 (214)
.+|--++..+...+.||++.|++. .+-..|..++.|..|+++.|++. .+|..++.+..+..+++..|.++-.+
T Consensus 32 ~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p 104 (326)
T KOG0473|consen 32 EIPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQP 104 (326)
T ss_pred ccchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCC
Confidence 344245667788899999999986 55567888899999999999998 89999999999999999999887543
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=88.27 E-value=0.44 Score=33.36 Aligned_cols=77 Identities=18% Similarity=0.235 Sum_probs=45.4
Q ss_pred CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhc
Q 035742 48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF 127 (214)
Q Consensus 48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l 127 (214)
+++.+.+..+ +. .+++..|.+...++.+.+.. .+...-...|..+++|+.+.+..+ +...-...|.+. .|+.+.+
T Consensus 36 ~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~ 110 (129)
T PF13306_consen 36 SLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINI 110 (129)
T ss_dssp T-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-
T ss_pred cccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEE
Confidence 6889998875 66 66657788988899999976 443233445777999999998765 442334456665 6776666
Q ss_pred cc
Q 035742 128 QF 129 (214)
Q Consensus 128 ~~ 129 (214)
..
T Consensus 111 ~~ 112 (129)
T PF13306_consen 111 PS 112 (129)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 74
>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n
Probab=87.23 E-value=1 Score=36.25 Aligned_cols=25 Identities=16% Similarity=0.456 Sum_probs=21.4
Q ss_pred HHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 189 GVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 189 ~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
.+...|...+|.+||+|.+|.++|+
T Consensus 256 ~li~~~l~~~P~~Rpt~~~v~~~l~ 280 (291)
T cd05094 256 DIMLGCWQREPQQRLNIKEIYKILH 280 (291)
T ss_pred HHHHHHcccChhhCcCHHHHHHHHH
Confidence 4444599999999999999999985
No 75
>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase. Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M
Probab=86.94 E-value=0.98 Score=36.25 Aligned_cols=28 Identities=21% Similarity=0.490 Sum_probs=23.8
Q ss_pred HHHHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742 187 IMGVAFPCLNESPVSRPTMQTVSQQLQI 214 (214)
Q Consensus 187 l~~~~l~C~~~~p~~Rp~m~~V~~~L~~ 214 (214)
+..+...|++.+|.+||++.++++.|++
T Consensus 261 l~~li~~~l~~~p~~Rpt~~el~~~l~~ 288 (288)
T cd05050 261 LYNLMRLCWSKLPSDRPSFASINRILQR 288 (288)
T ss_pred HHHHHHHHcccCcccCCCHHHHHHHhhC
Confidence 4455566999999999999999999975
No 76
>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases. Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut
Probab=86.85 E-value=0.49 Score=37.67 Aligned_cols=28 Identities=14% Similarity=0.347 Sum_probs=23.6
Q ss_pred HHHHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742 187 IMGVAFPCLNESPVSRPTMQTVSQQLQI 214 (214)
Q Consensus 187 l~~~~l~C~~~~p~~Rp~m~~V~~~L~~ 214 (214)
+..+...|...+|.+||+|.+|+++|++
T Consensus 255 ~~~li~~cl~~~p~~Rpt~~ei~~~l~~ 282 (284)
T cd05038 255 VYDLMKLCWEAEPQDRPSFADLILIVDR 282 (284)
T ss_pred HHHHHHHHhccChhhCCCHHHHHHHHhh
Confidence 4455556999999999999999999973
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.83 E-value=0.17 Score=24.64 Aligned_cols=13 Identities=46% Similarity=0.434 Sum_probs=5.2
Q ss_pred CCcEEeCcCCcCc
Q 035742 73 QLVHLDLSLNGFL 85 (214)
Q Consensus 73 ~L~~L~l~~n~l~ 85 (214)
+|+.|++++|.|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 4444455444443
No 78
>PHA02988 hypothetical protein; Provisional
Probab=86.19 E-value=1.5 Score=35.40 Aligned_cols=29 Identities=17% Similarity=0.468 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
..+.+++.. |...+|.+||++.+|++.|+
T Consensus 249 ~~l~~li~~---cl~~dp~~Rps~~ell~~l~ 277 (283)
T PHA02988 249 LEIKCIVEA---CTSHDSIKRPNIKEILYNLS 277 (283)
T ss_pred HHHHHHHHH---HhcCCcccCcCHHHHHHHHH
Confidence 555555555 99999999999999999885
No 79
>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.
Probab=85.32 E-value=1.9 Score=33.93 Aligned_cols=29 Identities=28% Similarity=0.541 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
..+.+++. .|...+|.+||+|.+|.++++
T Consensus 235 ~~~~~li~---~~l~~~p~~Rpt~~~i~~~~~ 263 (267)
T cd08229 235 EELRQLVN---MCINPDPEKRPDITYVYDVAK 263 (267)
T ss_pred HHHHHHHH---HhcCCCcccCCCHHHHHHHHh
Confidence 44444444 499999999999998888875
No 80
>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt
Probab=85.12 E-value=1.3 Score=35.19 Aligned_cols=30 Identities=23% Similarity=0.442 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQI 214 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~~ 214 (214)
..+.+++.. |...+|.+||++.+|.++|++
T Consensus 251 ~~~~~li~~---~l~~~p~~Rp~~~eil~~l~~ 280 (280)
T cd05049 251 SEVYDIMLG---CWKRDPQQRINIKDIHERLQK 280 (280)
T ss_pred HHHHHHHHH---HcCCCcccCCCHHHHHHHhhC
Confidence 444444444 999999999999999999974
No 81
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=84.33 E-value=0.62 Score=23.44 Aligned_cols=17 Identities=29% Similarity=0.546 Sum_probs=10.5
Q ss_pred ccceeeccccccccCCCc
Q 035742 97 KLSYISLQSNQLSGKIPL 114 (214)
Q Consensus 97 ~L~~L~ls~N~l~g~~p~ 114 (214)
+|+.|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4566666666666 5554
No 82
>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron. Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca
Probab=84.25 E-value=2.2 Score=33.51 Aligned_cols=25 Identities=24% Similarity=0.583 Sum_probs=21.3
Q ss_pred HHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 189 GVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 189 ~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
.....|...+|.+||++.+|.++|+
T Consensus 233 ~li~~cl~~~p~~Rp~~~~il~~l~ 257 (262)
T cd05058 233 EVMLSCWHPKPEMRPTFSELVSRIE 257 (262)
T ss_pred HHHHHHcCCChhhCCCHHHHHHHHH
Confidence 3444599999999999999999986
No 83
>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity. Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....
Probab=83.98 E-value=0.7 Score=36.67 Aligned_cols=28 Identities=29% Similarity=0.650 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHHHh
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQL 212 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L 212 (214)
..+.+++.. |...+|.+||+|++++++|
T Consensus 232 ~~~~~li~~---C~~~~p~~RPs~~~i~~~L 259 (259)
T PF07714_consen 232 KDIYSLIQQ---CWSHDPEKRPSFQEILQEL 259 (259)
T ss_dssp HHHHHHHHH---HT-SSGGGS--HHHHHHHH
T ss_pred HHHHHHHHH---HcCCChhhCcCHHHHHhcC
Confidence 445555555 9999999999999999986
No 84
>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3. Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th
Probab=83.95 E-value=1.3 Score=35.38 Aligned_cols=26 Identities=23% Similarity=0.574 Sum_probs=21.9
Q ss_pred HHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
..+...|...+|.+||+|++|+++|+
T Consensus 256 ~~li~~cl~~~p~~Rpt~~ei~~~l~ 281 (284)
T cd05081 256 YAIMKECWNNDPSQRPSFSELALQVE 281 (284)
T ss_pred HHHHHHHccCChhhCCCHHHHHHHHH
Confidence 34444599999999999999999986
No 85
>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly
Probab=83.84 E-value=1.5 Score=35.05 Aligned_cols=25 Identities=28% Similarity=0.648 Sum_probs=21.5
Q ss_pred HHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 189 GVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 189 ~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
.+...|...+|.+||++++|...|+
T Consensus 257 ~li~~cl~~~p~~RP~~~~i~~~l~ 281 (283)
T cd05091 257 TLMLECWNEFPSRRPRFKDIHSRLR 281 (283)
T ss_pred HHHHHHhCCCcccCCCHHHHHHHhh
Confidence 4444599999999999999999986
No 86
>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase. Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ
Probab=83.48 E-value=0.97 Score=35.44 Aligned_cols=27 Identities=26% Similarity=0.524 Sum_probs=22.9
Q ss_pred HHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 187 IMGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 187 l~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
+..+...|...+|.+||++.+|.++|+
T Consensus 230 ~~~l~~~~l~~~p~~Rp~~~~~l~~l~ 256 (256)
T cd05112 230 VYELMQHCWKERPEDRPSFSLLLHQLA 256 (256)
T ss_pred HHHHHHHHcccChhhCCCHHHHHHhhC
Confidence 445566699999999999999999885
No 87
>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase. Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio
Probab=83.27 E-value=1.5 Score=34.56 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
..+.+++.. |...+|.+||+|.+|+.+|+
T Consensus 225 ~~l~~li~~---~~~~~p~~Rp~~~~i~~~l~ 253 (257)
T cd05116 225 PEMYDLMKL---CWTYGVDERPGFAVVELRLR 253 (257)
T ss_pred HHHHHHHHH---HhccCchhCcCHHHHHHHHh
Confidence 444555555 99999999999999999986
No 88
>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored
Probab=83.10 E-value=1 Score=35.56 Aligned_cols=27 Identities=15% Similarity=0.379 Sum_probs=22.7
Q ss_pred HHHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQQLQI 214 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~~ 214 (214)
..+...|...+|..||+|++|.++|++
T Consensus 240 ~~li~~c~~~~p~~Rp~~~~i~~~l~~ 266 (268)
T cd05063 240 YQLMLQCWQQDRARRPRFVDIVNLLDK 266 (268)
T ss_pred HHHHHHHcCCCcccCcCHHHHHHHHHh
Confidence 445555999999999999999999863
No 89
>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors. Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke
Probab=83.06 E-value=1.1 Score=36.12 Aligned_cols=29 Identities=24% Similarity=0.426 Sum_probs=23.9
Q ss_pred HHHHHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742 186 SIMGVAFPCLNESPVSRPTMQTVSQQLQI 214 (214)
Q Consensus 186 ~l~~~~l~C~~~~p~~Rp~m~~V~~~L~~ 214 (214)
++..+...|...+|.+||+|.+|.+.|+.
T Consensus 268 ~l~~li~~cl~~~p~~Rpt~~el~~~L~~ 296 (296)
T cd05051 268 DIYELMLECWRRDEEDRPTFREIHLFLQR 296 (296)
T ss_pred HHHHHHHHHhccChhcCCCHHHHHHHhcC
Confidence 34555566999999999999999999873
No 90
>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor. Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta
Probab=82.85 E-value=1.3 Score=35.62 Aligned_cols=27 Identities=22% Similarity=0.317 Sum_probs=22.2
Q ss_pred HHHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQQLQI 214 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~~ 214 (214)
..+...|+..+|.+||+|+++++.|++
T Consensus 251 ~~li~~~l~~~p~~Rps~~~ll~~l~~ 277 (288)
T cd05061 251 TDLMRMCWQFNPKMRPTFLEIVNLLKD 277 (288)
T ss_pred HHHHHHHcCCChhHCcCHHHHHHHHHh
Confidence 344445999999999999999998863
No 91
>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2. Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit
Probab=82.83 E-value=1.2 Score=35.89 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=22.6
Q ss_pred HHHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQQLQI 214 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~~ 214 (214)
..+...|...+|.+||+|.+|.+.|+.
T Consensus 270 ~~li~~cl~~~p~~Rp~~~~i~~~l~~ 296 (296)
T cd05095 270 YKLMLSCWRRNAKERPSFQEIHATLLE 296 (296)
T ss_pred HHHHHHHcCCCcccCCCHHHHHHHHhC
Confidence 344455999999999999999999874
No 92
>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh
Probab=82.63 E-value=1.6 Score=34.78 Aligned_cols=27 Identities=15% Similarity=0.341 Sum_probs=22.3
Q ss_pred HHHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQQLQI 214 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~~ 214 (214)
..+...|.+.+|.+||++.+++++|+.
T Consensus 251 ~~li~~~l~~~p~~Rps~~e~l~~l~~ 277 (277)
T cd05062 251 FELMRMCWQYNPKMRPSFLEIISSIKE 277 (277)
T ss_pred HHHHHHHcCCChhhCcCHHHHHHHhhC
Confidence 334445999999999999999999874
No 93
>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome. Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds
Probab=82.54 E-value=2.9 Score=32.93 Aligned_cols=26 Identities=23% Similarity=0.593 Sum_probs=21.3
Q ss_pred HHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
......|...+|.+||++.++++.|+
T Consensus 231 ~~li~~cl~~~p~~Rp~~~~ll~~~~ 256 (256)
T cd05113 231 YAIMYSCWHEKAEERPTFQQLLSSIE 256 (256)
T ss_pred HHHHHHHcCCCcccCCCHHHHHHhhC
Confidence 33444599999999999999999875
No 94
>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly
Probab=82.47 E-value=1.3 Score=35.56 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=21.7
Q ss_pred HHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
......|...+|.+||++.+|.+.|+
T Consensus 252 ~~li~~~l~~~p~~Rpt~~~v~~~l~ 277 (288)
T cd05093 252 YDLMLGCWQREPHMRLNIKEIHSLLQ 277 (288)
T ss_pred HHHHHHHccCChhhCCCHHHHHHHHH
Confidence 34444599999999999999999886
No 95
>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes. Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an
Probab=82.16 E-value=3.4 Score=32.48 Aligned_cols=30 Identities=30% Similarity=0.558 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 181 QEKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 181 ~~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
+..+.+++. .|...+|.+||++.+|.+.|+
T Consensus 229 ~~~~~~li~---~~l~~~p~~Rp~~~~i~~~l~ 258 (260)
T cd05069 229 PESLHELMK---LCWKKDPDERPTFEYIQSFLE 258 (260)
T ss_pred CHHHHHHHH---HHccCCcccCcCHHHHHHHHh
Confidence 344444544 499999999999999999986
No 96
>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including
Probab=82.06 E-value=1.2 Score=35.91 Aligned_cols=27 Identities=19% Similarity=0.475 Sum_probs=22.7
Q ss_pred HHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 187 IMGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 187 l~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
+......|...+|.+||+|.+|.++|+
T Consensus 268 l~~li~~~l~~~p~~RPs~~~i~~~l~ 294 (295)
T cd05097 268 VFKLMMRCWSRDIKDRPTFNKIHHFLR 294 (295)
T ss_pred HHHHHHHHcCCCchhCcCHHHHHHHHh
Confidence 344555599999999999999999986
No 97
>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk. Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom
Probab=81.94 E-value=1.2 Score=34.96 Aligned_cols=26 Identities=19% Similarity=0.602 Sum_probs=22.2
Q ss_pred HHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
..+...|...+|.+||+++++.++|+
T Consensus 234 ~~~i~~~l~~~p~~Rpt~~~l~~~L~ 259 (261)
T cd05148 234 YKIMLECWAAEPEDRPSFKALREELD 259 (261)
T ss_pred HHHHHHHcCCCchhCcCHHHHHHHHh
Confidence 34445699999999999999999986
No 98
>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment
Probab=81.80 E-value=1.9 Score=34.06 Aligned_cols=27 Identities=19% Similarity=0.411 Sum_probs=22.4
Q ss_pred HHHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQQLQI 214 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~~ 214 (214)
..+...|...+|.+||++.+|.++|++
T Consensus 238 ~~li~~cl~~~p~~Rp~~~ei~~~l~~ 264 (266)
T cd05033 238 YQLMLDCWQKDRNERPTFSQIVSTLDK 264 (266)
T ss_pred HHHHHHHcCCCcccCcCHHHHHHHHHh
Confidence 344445999999999999999999873
No 99
>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase. Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays
Probab=81.73 E-value=1.3 Score=34.93 Aligned_cols=25 Identities=20% Similarity=0.492 Sum_probs=21.4
Q ss_pred HHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 189 GVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 189 ~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
.+...|...+|.+||++.++.++|+
T Consensus 236 ~li~~cl~~~p~~Rp~~~~l~~~l~ 260 (263)
T cd05052 236 ELMRACWQWNPSDRPSFAEIHQAFE 260 (263)
T ss_pred HHHHHHccCCcccCCCHHHHHHHHH
Confidence 3444599999999999999999986
No 100
>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein. Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi
Probab=81.65 E-value=1.1 Score=36.09 Aligned_cols=26 Identities=27% Similarity=0.668 Sum_probs=22.3
Q ss_pred HHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
......|...+|.+||++++++++|+
T Consensus 259 ~~~i~~cl~~~P~~Rp~~~~i~~~l~ 284 (290)
T cd05045 259 YNLMLTCWKQEPDKRPTFADISKELE 284 (290)
T ss_pred HHHHHHHccCCcccCCCHHHHHHHHH
Confidence 34455699999999999999999987
No 101
>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit. Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce
Probab=81.51 E-value=1 Score=38.08 Aligned_cols=26 Identities=23% Similarity=0.594 Sum_probs=22.0
Q ss_pred HHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742 189 GVAFPCLNESPVSRPTMQTVSQQLQI 214 (214)
Q Consensus 189 ~~~l~C~~~~p~~Rp~m~~V~~~L~~ 214 (214)
.+...|.+.+|.+||+|.+|+++|++
T Consensus 348 ~li~~cl~~dP~~RPs~~eil~~l~~ 373 (375)
T cd05104 348 DIMKSCWDADPLKRPTFKQIVQLIEQ 373 (375)
T ss_pred HHHHHHccCChhHCcCHHHHHHHHHh
Confidence 34445999999999999999999874
No 102
>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,
Probab=81.31 E-value=1.3 Score=35.56 Aligned_cols=27 Identities=26% Similarity=0.569 Sum_probs=22.8
Q ss_pred HHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 187 IMGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 187 l~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
+..+...|...+|.+||+|++|++.|+
T Consensus 263 ~~~li~~~l~~~p~~Rps~~eil~~l~ 289 (293)
T cd05053 263 LYHLMRDCWHEVPSQRPTFKQLVEDLD 289 (293)
T ss_pred HHHHHHHHcccCcccCcCHHHHHHHHH
Confidence 445555699999999999999999986
No 103
>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V
Probab=81.27 E-value=1.7 Score=35.83 Aligned_cols=26 Identities=23% Similarity=0.534 Sum_probs=21.9
Q ss_pred HHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
..+...|...+|.+||++.+|+++|+
T Consensus 307 ~~li~~cl~~dp~~RPs~~el~~~l~ 332 (338)
T cd05102 307 YRIMLACWQGDPKERPTFSALVEILG 332 (338)
T ss_pred HHHHHHHccCChhhCcCHHHHHHHHH
Confidence 34444599999999999999999986
No 104
>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h
Probab=81.26 E-value=1.4 Score=34.67 Aligned_cols=27 Identities=26% Similarity=0.642 Sum_probs=22.4
Q ss_pred HHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 187 IMGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 187 l~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
+..+...|...+|.+||+|.+++++|.
T Consensus 230 ~~~li~~c~~~~p~~Rps~~~l~~~l~ 256 (256)
T cd05114 230 VYEVMYSCWHEKPEGRPTFAELLRAIT 256 (256)
T ss_pred HHHHHHHHccCCcccCcCHHHHHHhhC
Confidence 345555699999999999999999873
No 105
>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl. Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor
Probab=81.25 E-value=2.1 Score=33.85 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=21.8
Q ss_pred HHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
..+...|...+|.+||++.++.++|+
T Consensus 244 ~~li~~~l~~~p~~Rps~~~l~~~l~ 269 (272)
T cd05075 244 YSLMSSCWLLNPKDRPSFETLRCELE 269 (272)
T ss_pred HHHHHHHcCCCcccCcCHHHHHHHHH
Confidence 34444599999999999999999986
No 106
>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory
Probab=81.12 E-value=2 Score=34.29 Aligned_cols=30 Identities=23% Similarity=0.487 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQI 214 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~~ 214 (214)
..+.+++. .|.+.+|.+||++.+|.++|++
T Consensus 251 ~~~~~li~---~cl~~~P~~Rp~~~~l~~~l~~ 280 (280)
T cd05092 251 PEVYAIMQ---GCWQREPQQRMVIKDIHSRLQA 280 (280)
T ss_pred HHHHHHHH---HHccCChhhCCCHHHHHHHHhC
Confidence 44444444 4999999999999999999874
No 107
>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.
Probab=81.01 E-value=1.6 Score=34.46 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=19.9
Q ss_pred hcccCCCCCCCCCHHHHHHHhc
Q 035742 192 FPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 192 l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
..|...+|..||+|.+|++++.
T Consensus 247 ~~cl~~~p~~Rp~~~e~~~~~~ 268 (269)
T cd08528 247 TSCLTPDAEARPDIIQVSAMIS 268 (269)
T ss_pred HHHCCCCCccCCCHHHHHHHhc
Confidence 3599999999999999999985
No 108
>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes. Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular
Probab=80.47 E-value=1.4 Score=34.44 Aligned_cols=26 Identities=35% Similarity=0.512 Sum_probs=22.0
Q ss_pred HHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742 189 GVAFPCLNESPVSRPTMQTVSQQLQI 214 (214)
Q Consensus 189 ~~~l~C~~~~p~~Rp~m~~V~~~L~~ 214 (214)
.....|+..+|.+||++.+|.++|+.
T Consensus 227 ~li~~~l~~~p~~Rps~~~~~~~l~~ 252 (252)
T cd05084 227 RLMERCWEYDPGQRPSFSTVHQELQS 252 (252)
T ss_pred HHHHHHcCCChhhCcCHHHHHHHHhC
Confidence 34445999999999999999999974
No 109
>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a
Probab=80.34 E-value=1.4 Score=34.68 Aligned_cols=27 Identities=30% Similarity=0.672 Sum_probs=22.7
Q ss_pred HHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 187 IMGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 187 l~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
+..+...|...+|.+||+|.++..+|+
T Consensus 233 ~~~li~~~l~~~P~~Rp~~~~l~~~l~ 259 (261)
T cd05068 233 LYDIMLDCWKEDPDDRPTFETLQWKLE 259 (261)
T ss_pred HHHHHHHHhhcCcccCCCHHHHHHHHh
Confidence 344555699999999999999999986
No 110
>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer. Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c
Probab=79.86 E-value=1.8 Score=33.73 Aligned_cols=28 Identities=21% Similarity=0.481 Sum_probs=22.9
Q ss_pred HHHHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742 187 IMGVAFPCLNESPVSRPTMQTVSQQLQI 214 (214)
Q Consensus 187 l~~~~l~C~~~~p~~Rp~m~~V~~~L~~ 214 (214)
+......|...+|.+||++.+++++|+.
T Consensus 223 ~~~li~~~l~~~p~~Rp~~~~l~~~l~~ 250 (250)
T cd05085 223 VYKVMQRCWDYKPENRPKFSELQKELAA 250 (250)
T ss_pred HHHHHHHHcccCcccCCCHHHHHHHhcC
Confidence 3444455999999999999999999863
No 111
>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3. Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity
Probab=79.49 E-value=1.4 Score=34.69 Aligned_cols=26 Identities=19% Similarity=0.503 Sum_probs=21.3
Q ss_pred HHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
..+-..|.+.+|.+||++++++++|+
T Consensus 233 ~~li~~~l~~~p~~Rps~~~il~~l~ 258 (258)
T cd05078 233 ANLINQCMDYEPDFRPSFRAIIRDLN 258 (258)
T ss_pred HHHHHHHhccChhhCCCHHHHHHhcC
Confidence 33444499999999999999999874
No 112
>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros. Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male
Probab=79.37 E-value=3.2 Score=32.69 Aligned_cols=30 Identities=30% Similarity=0.661 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 181 QEKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 181 ~~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
+..+.++.. .|...+|.+||++.+|.++|+
T Consensus 239 ~~~~~~li~---~~l~~~p~~Rp~~~~i~~~l~ 268 (269)
T cd05044 239 PDKIYQLMT---NCWAQDPSERPTFDRIQEILQ 268 (269)
T ss_pred hHHHHHHHH---HHcCCCcccCCCHHHHHHHHh
Confidence 344444444 599999999999999999986
No 113
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=79.23 E-value=1.9 Score=21.68 Aligned_cols=12 Identities=50% Similarity=0.562 Sum_probs=5.9
Q ss_pred CCcEEeCcCCcC
Q 035742 73 QLVHLDLSLNGF 84 (214)
Q Consensus 73 ~L~~L~l~~n~l 84 (214)
+|+.|++++|.|
T Consensus 3 ~L~~L~L~~NkI 14 (26)
T smart00365 3 NLEELDLSQNKI 14 (26)
T ss_pred ccCEEECCCCcc
Confidence 444455555444
No 114
>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign
Probab=78.69 E-value=1.6 Score=34.91 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=21.8
Q ss_pred HHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
......|...+|.+||+|++|+++|+
T Consensus 254 ~~li~~cl~~~p~~Rps~~~i~~~l~ 279 (283)
T cd05080 254 YILMKNCWETEAKFRPTFRSLIPILK 279 (283)
T ss_pred HHHHHHHhccChhhCCCHHHHHHHHH
Confidence 33444599999999999999999986
No 115
>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul
Probab=78.40 E-value=2.3 Score=33.65 Aligned_cols=27 Identities=15% Similarity=0.363 Sum_probs=22.3
Q ss_pred HHHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQQLQI 214 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~~ 214 (214)
......|.+.+|.+||+|.+|.++|++
T Consensus 239 ~~li~~~l~~~p~~Rp~~~~i~~~l~~ 265 (267)
T cd05066 239 HQLMLDCWQKDRNERPKFEQIVSILDK 265 (267)
T ss_pred HHHHHHHcccCchhCCCHHHHHHHHHh
Confidence 344445999999999999999999873
No 116
>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly
Probab=78.30 E-value=3 Score=33.26 Aligned_cols=30 Identities=27% Similarity=0.636 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQI 214 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~~ 214 (214)
..+.+++. .|...+|.+||++.+|.++|++
T Consensus 253 ~~~~~li~---~cl~~~p~~Rp~~~~i~~~l~~ 282 (283)
T cd05090 253 PRMYSLMT---ECWQEGPSRRPRFKDIHTRLRS 282 (283)
T ss_pred HHHHHHHH---HHcccCcccCcCHHHHHHHhhc
Confidence 34444444 5999999999999999999874
No 117
>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]
Probab=78.22 E-value=3.8 Score=34.78 Aligned_cols=71 Identities=21% Similarity=0.389 Sum_probs=42.3
Q ss_pred ceeecchhhhhcCCCCchhhhhhcccccchh-hhhhhhcCCCCCCCcchhHHHHHHHHHHhhcccCCCCCCCCCHHHHHH
Q 035742 132 LKLLVLVLEVIKGKHPRDFLCSILSSSLTKD-VALDEMLDPRLPTSSCSVQEKLISIMGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 132 l~g~~p~~~~l~g~~p~~~~~~~~~~~~~~~-~~~~~~l~~~lp~~~~~~~~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
+++.|-.++.++|.+|..-... .... ....+...+.+|.... ..+..++.. |=..+|.+||++.+++.
T Consensus 230 ySFgIvlWEl~t~~~Pf~~~~~-----~~~~~~v~~~~~Rp~~p~~~~---~~l~~l~~~---CW~~dp~~RP~f~ei~~ 298 (362)
T KOG0192|consen 230 YSFGIVLWELLTGEIPFEDLAP-----VQVASAVVVGGLRPPIPKECP---PHLSSLMER---CWLVDPSRRPSFLEIVS 298 (362)
T ss_pred hhHHHHHHHHHHCCCCCCCCCH-----HHHHHHHHhcCCCCCCCccCC---HHHHHHHHH---hCCCCCCcCCCHHHHHH
Confidence 3344444677777777643221 0111 1112444555666533 444445554 99999999999999999
Q ss_pred Hhc
Q 035742 211 QLQ 213 (214)
Q Consensus 211 ~L~ 213 (214)
+|+
T Consensus 299 ~l~ 301 (362)
T KOG0192|consen 299 RLE 301 (362)
T ss_pred HHH
Confidence 986
No 118
>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1. Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k
Probab=77.65 E-value=2 Score=34.82 Aligned_cols=26 Identities=15% Similarity=0.377 Sum_probs=21.9
Q ss_pred HHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
..+...|...+|.+||+|.+|++.|+
T Consensus 278 ~~li~~cl~~~p~~RPs~~~i~~~l~ 303 (304)
T cd05096 278 YELMLQCWSRDCRERPSFSDIHAFLT 303 (304)
T ss_pred HHHHHHHccCCchhCcCHHHHHHHHh
Confidence 34445599999999999999999886
No 119
>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor
Probab=76.93 E-value=3.3 Score=32.77 Aligned_cols=26 Identities=15% Similarity=0.354 Sum_probs=21.5
Q ss_pred HHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742 189 GVAFPCLNESPVSRPTMQTVSQQLQI 214 (214)
Q Consensus 189 ~~~l~C~~~~p~~Rp~m~~V~~~L~~ 214 (214)
.....|...+|.+||++.++.+.|++
T Consensus 239 ~li~~c~~~~p~~RP~~~~i~~~l~~ 264 (266)
T cd05064 239 QLMLDCWQKERGERPRFSQIHSILSK 264 (266)
T ss_pred HHHHHHcCCCchhCCCHHHHHHHHHh
Confidence 33345999999999999999998863
No 120
>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi
Probab=76.91 E-value=1.9 Score=33.83 Aligned_cols=26 Identities=19% Similarity=0.512 Sum_probs=21.9
Q ss_pred HHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742 189 GVAFPCLNESPVSRPTMQTVSQQLQI 214 (214)
Q Consensus 189 ~~~l~C~~~~p~~Rp~m~~V~~~L~~ 214 (214)
.+...|...+|.+||++.+|.++|++
T Consensus 229 ~li~~cl~~~p~~Rp~~~~l~~~l~~ 254 (257)
T cd05060 229 SIMLSCWKYRPEDRPTFSELESTFRR 254 (257)
T ss_pred HHHHHHhcCChhhCcCHHHHHHHHHh
Confidence 44445999999999999999999863
No 121
>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological
Probab=76.63 E-value=3.7 Score=32.48 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=22.6
Q ss_pred HHHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQQLQI 214 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~~ 214 (214)
..+...|.+.+|.+||++.++.++|+.
T Consensus 251 ~~li~~~l~~~p~~Rpt~~~l~~~l~~ 277 (277)
T cd05032 251 LELMRMCWQYNPKMRPTFLEIVSSLKD 277 (277)
T ss_pred HHHHHHHcCCChhhCCCHHHHHHHhcC
Confidence 444455999999999999999999873
No 122
>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu
Probab=76.54 E-value=3.4 Score=32.53 Aligned_cols=26 Identities=23% Similarity=0.622 Sum_probs=21.5
Q ss_pred HHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
......|...+|.+||++.+|++.|+
T Consensus 245 ~~li~~~l~~~p~~Rp~~~e~~~~l~ 270 (273)
T cd05035 245 YDLMYSCWRADPKDRPTFTKLREVLE 270 (273)
T ss_pred HHHHHHHcCCChhhCcCHHHHHHHHH
Confidence 33334499999999999999999886
No 123
>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k
Probab=76.22 E-value=2.2 Score=33.26 Aligned_cols=30 Identities=30% Similarity=0.599 Sum_probs=23.7
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQI 214 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~~ 214 (214)
..+.+++. .|...+|.+||++.+|.+.|++
T Consensus 222 ~~~~~li~---~~l~~~p~~Rp~~~ell~~l~~ 251 (251)
T cd05041 222 EEIYRLML---QCWAYDPENRPSFSEIYNELQI 251 (251)
T ss_pred HHHHHHHH---HHhccChhhCcCHHHHHHHhhC
Confidence 44444444 4999999999999999999874
No 124
>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn. Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa
Probab=76.03 E-value=2.5 Score=33.20 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=22.5
Q ss_pred HHHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQQLQI 214 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~~ 214 (214)
......|...+|.+||++.++.++|+.
T Consensus 234 ~~li~~~l~~~p~~Rp~~~~i~~~l~~ 260 (261)
T cd05072 234 YDIMKTCWKEKAEERPTFDYLQSVLDD 260 (261)
T ss_pred HHHHHHHccCCcccCcCHHHHHHHHhc
Confidence 344555999999999999999999863
No 125
>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase. Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki
Probab=75.90 E-value=3.1 Score=32.55 Aligned_cols=26 Identities=19% Similarity=0.500 Sum_probs=21.9
Q ss_pred HHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742 189 GVAFPCLNESPVSRPTMQTVSQQLQI 214 (214)
Q Consensus 189 ~~~l~C~~~~p~~Rp~m~~V~~~L~~ 214 (214)
.....|...+|..||++++|++.|++
T Consensus 228 ~li~~~l~~~p~~Rp~~~~l~~~l~~ 253 (254)
T cd05083 228 VLMTSCWETEPKKRPSFHKLREKLEK 253 (254)
T ss_pred HHHHHHcCCChhhCcCHHHHHHHHcc
Confidence 33345999999999999999999874
No 126
>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr
Probab=75.50 E-value=2.2 Score=33.75 Aligned_cols=27 Identities=15% Similarity=0.364 Sum_probs=22.5
Q ss_pred HHHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQQLQI 214 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~~ 214 (214)
..+...|...+|.+||+|.+|..+|++
T Consensus 241 ~~li~~~l~~~p~~Rp~~~~i~~~l~~ 267 (269)
T cd05065 241 HQLMLDCWQKDRNARPKFGQIVSTLDK 267 (269)
T ss_pred HHHHHHHcCCChhhCcCHHHHHHHHHh
Confidence 344455999999999999999999863
No 127
>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase. Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re
Probab=75.16 E-value=3.2 Score=32.52 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=20.8
Q ss_pred HhhcccCCCCCCCCCHHHHHHHhc
Q 035742 190 VAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 190 ~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
....|...+|.+||++.+++++|+
T Consensus 231 li~~~l~~~p~~Rpt~~~l~~~l~ 254 (256)
T cd05082 231 VMKQCWHLDAATRPSFLQLREQLE 254 (256)
T ss_pred HHHHHhcCChhhCcCHHHHHHHHh
Confidence 334599999999999999999986
No 128
>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows
Probab=74.79 E-value=2.4 Score=33.29 Aligned_cols=27 Identities=26% Similarity=0.671 Sum_probs=22.2
Q ss_pred HHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 187 IMGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 187 l~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
+..+...|...+|.+||+|.+|.++|.
T Consensus 230 ~~~li~~cl~~~p~~Rpt~~~~l~~l~ 256 (256)
T cd05059 230 VYTIMYSCWHEKPEDRPAFKKLLSQLT 256 (256)
T ss_pred HHHHHHHHhcCChhhCcCHHHHHHHhC
Confidence 344555599999999999999999873
No 129
>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase). Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It
Probab=74.78 E-value=2.5 Score=33.64 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=21.3
Q ss_pred HHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 189 GVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 189 ~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
.+...|...+|.+||++.+|+++|+
T Consensus 250 ~li~~~l~~~p~~Rps~~~~~~~l~ 274 (280)
T cd05043 250 AVMACCWALDPEERPSFSQLVQCLT 274 (280)
T ss_pred HHHHHHcCCChhhCCCHHHHHHHHH
Confidence 3444599999999999999999986
No 130
>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk. Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r
Probab=74.65 E-value=2.8 Score=32.94 Aligned_cols=26 Identities=23% Similarity=0.533 Sum_probs=21.9
Q ss_pred HHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
..+...|...+|.+||+++++.+.|+
T Consensus 233 ~~li~~~l~~~p~~Rpt~~~l~~~l~ 258 (260)
T cd05070 233 HELMLQCWKKDPEERPTFEYLQSFLE 258 (260)
T ss_pred HHHHHHHcccCcccCcCHHHHHHHHh
Confidence 34445599999999999999999886
No 131
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.18 E-value=0.79 Score=35.52 Aligned_cols=81 Identities=11% Similarity=0.113 Sum_probs=47.8
Q ss_pred CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCc-CCChhhhh-CCcccceeecccc-ccccCCCccccccccchh
Q 035742 48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFL-GTIPSQIG-NLSKLSYISLQSN-QLSGKIPLEVGLLTHLKV 124 (214)
Q Consensus 48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~-~~~p~~~~-~l~~L~~L~ls~N-~l~g~~p~~~~~l~~L~~ 124 (214)
.++.++-++..|... .-..+.+++.++.|.+.++.-- ..--..++ -.++|+.|+++.| +|+..--..+.++++|+.
T Consensus 102 ~IeaVDAsds~I~~e-Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYE-GLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHH-HHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 467777777777632 2245666777777777766422 11111222 3467888888865 455333345667777777
Q ss_pred hhccc
Q 035742 125 LHFQF 129 (214)
Q Consensus 125 L~l~~ 129 (214)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 77654
No 132
>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains. Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc
Probab=73.71 E-value=6.3 Score=30.63 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=17.9
Q ss_pred HhhcccCCCCCCCCCHHHHHHH
Q 035742 190 VAFPCLNESPVSRPTMQTVSQQ 211 (214)
Q Consensus 190 ~~l~C~~~~p~~Rp~m~~V~~~ 211 (214)
.-..|...+|.+||+|.+++..
T Consensus 232 ~i~~~l~~~p~~Rp~~~~ll~~ 253 (256)
T cd08529 232 LIDQCLTKDYRQRPDTFQLLRN 253 (256)
T ss_pred HHHHHccCCcccCcCHHHHhhC
Confidence 3334999999999999999763
No 133
>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan
Probab=73.47 E-value=3.2 Score=32.29 Aligned_cols=26 Identities=23% Similarity=0.566 Sum_probs=21.4
Q ss_pred HHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
..+...|++.+|.+||++.++.+.|+
T Consensus 237 ~~li~~~l~~~p~~Rps~~~l~~~l~ 262 (262)
T cd00192 237 YELMLSCWQLDPEDRPTFSELVERLE 262 (262)
T ss_pred HHHHHHHccCCcccCcCHHHHHHhhC
Confidence 33444599999999999999999875
No 134
>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase. Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and
Probab=73.46 E-value=3.6 Score=32.13 Aligned_cols=25 Identities=28% Similarity=0.616 Sum_probs=21.3
Q ss_pred HHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 189 GVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 189 ~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
.+...|.+.+|.+||++.+|++.|.
T Consensus 232 ~li~~~l~~~p~~Rps~~~~~~~l~ 256 (257)
T cd05040 232 NVMLQCWAHNPADRPTFAALREFLP 256 (257)
T ss_pred HHHHHHCCCCcccCCCHHHHHHHhc
Confidence 3444599999999999999999885
No 135
>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l
Probab=73.24 E-value=2.8 Score=33.27 Aligned_cols=27 Identities=22% Similarity=0.517 Sum_probs=22.6
Q ss_pred HHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 187 IMGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 187 l~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
+..+...|...+|.+||++.+++.+|+
T Consensus 240 ~~~li~~~l~~~p~~Rps~~~il~~l~ 266 (270)
T cd05047 240 VYDLMRQCWREKPYERPSFAQILVSLN 266 (270)
T ss_pred HHHHHHHHcccChhhCCCHHHHHHHHH
Confidence 345555599999999999999999986
No 136
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=73.17 E-value=2.5 Score=34.57 Aligned_cols=43 Identities=28% Similarity=0.461 Sum_probs=25.0
Q ss_pred ccCCCCCCcEEeCcCCcCcCCChhhh----hCCcccceeeccccccc
Q 035742 67 SFSSFPQLVHLDLSLNGFLGTIPSQI----GNLSKLSYISLQSNQLS 109 (214)
Q Consensus 67 ~~~~l~~L~~L~l~~n~l~~~~p~~~----~~l~~L~~L~ls~N~l~ 109 (214)
.+.++++|+..+||.|.|.-..|+.+ ...+.|.+|.+++|.+.
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 34456666666666666655555433 33455666666666553
No 137
>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=72.69 E-value=2.6 Score=34.12 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=21.2
Q ss_pred HHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 189 GVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 189 ~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
.....|...+|.+||+|.+|+++|+
T Consensus 270 ~li~~cl~~~p~~Rps~~e~l~~l~ 294 (304)
T cd05101 270 MMMRDCWHAIPSHRPTFKQLVEDLD 294 (304)
T ss_pred HHHHHHcccChhhCCCHHHHHHHHH
Confidence 3444599999999999999999986
No 138
>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase. Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well
Probab=72.58 E-value=3.7 Score=32.68 Aligned_cols=25 Identities=24% Similarity=0.594 Sum_probs=21.4
Q ss_pred HHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 189 GVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 189 ~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
.....|+..+|.+||++.+|.+.|+
T Consensus 252 ~~i~~cl~~~p~~Rps~~~vl~~l~ 276 (277)
T cd05036 252 RIMTDCWQHTPEDRPNFATILERIQ 276 (277)
T ss_pred HHHHHHcCCCcccCcCHHHHHHHhh
Confidence 3444599999999999999999886
No 139
>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a
Probab=72.42 E-value=3.7 Score=32.19 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=21.3
Q ss_pred HHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 189 GVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 189 ~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
..-..|...+|.+||++.+|.++|+
T Consensus 239 ~~i~~cl~~~p~~Rp~~~~il~~~~ 263 (267)
T cd08224 239 DLVSRCINPDPEKRPDISYVLQVAK 263 (267)
T ss_pred HHHHHHcCCCcccCCCHHHHHHHHH
Confidence 3344599999999999999999986
No 140
>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3. Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac
Probab=72.01 E-value=3.1 Score=32.87 Aligned_cols=28 Identities=25% Similarity=0.582 Sum_probs=23.4
Q ss_pred HHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 186 SIMGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 186 ~l~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
.+..+...|...+|..||++.+|.+.|+
T Consensus 243 ~~~~l~~~~l~~~p~~Rps~~~~~~~l~ 270 (273)
T cd05074 243 DVYELMCQCWSPEPKCRPSFQHLRDQLE 270 (273)
T ss_pred HHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence 3445555699999999999999999986
No 141
>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti
Probab=71.95 E-value=2.6 Score=35.61 Aligned_cols=30 Identities=40% Similarity=0.619 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQI 214 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~~ 214 (214)
..+.+++. .|...+|.+||++.+|+++|++
T Consensus 342 ~~l~~li~---~cl~~dp~~RPs~~~l~~~l~~ 371 (374)
T cd05106 342 PEIYSIMK---MCWNLEPTERPTFSQISQLIQR 371 (374)
T ss_pred HHHHHHHH---HHcCCChhhCcCHHHHHHHHHH
Confidence 34444444 4999999999999999999873
No 142
>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk
Probab=71.67 E-value=3.4 Score=32.34 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=20.7
Q ss_pred HhhcccCCCCCCCCCHHHHHHHhc
Q 035742 190 VAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 190 ~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
.-..|+..+|.+||++.++.++|+
T Consensus 231 li~~~l~~~p~~Rp~~~~l~~~l~ 254 (256)
T cd05039 231 VMKDCWELDPAKRPTFKQLREQLA 254 (256)
T ss_pred HHHHHhccChhhCcCHHHHHHHHh
Confidence 333499999999999999999986
No 143
>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=71.44 E-value=3.4 Score=33.56 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=21.3
Q ss_pred HHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 189 GVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 189 ~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
.+...|...+|.+||+|.+|+++|+
T Consensus 273 ~li~~~l~~~p~~Rps~~evl~~l~ 297 (307)
T cd05098 273 MMMRDCWHAVPSQRPTFKQLVEDLD 297 (307)
T ss_pred HHHHHHcccChhhCcCHHHHHHHHH
Confidence 3444599999999999999999985
No 144
>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3. Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r
Probab=71.30 E-value=3.9 Score=32.67 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=21.8
Q ss_pred HHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
......|...+|.+||++.++.++|+
T Consensus 241 ~~li~~c~~~~p~~Rps~~el~~~l~ 266 (279)
T cd05111 241 YMVMVKCWMIDENVRPTFKELANEFT 266 (279)
T ss_pred HHHHHHHcCCCcccCcCHHHHHHHHH
Confidence 34445699999999999999999875
No 145
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=71.26 E-value=3.7 Score=20.77 Aligned_cols=13 Identities=46% Similarity=0.381 Sum_probs=7.5
Q ss_pred CCcEEeCcCCcCc
Q 035742 73 QLVHLDLSLNGFL 85 (214)
Q Consensus 73 ~L~~L~l~~n~l~ 85 (214)
.|+.|+|++|.|.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4556666666553
No 146
>smart00750 KIND kinase non-catalytic C-lobe domain. It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features
Probab=71.26 E-value=6.9 Score=28.68 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=20.2
Q ss_pred HHHhhcccCCCCCCCCCHHHHHHHh
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQQL 212 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~~L 212 (214)
...-..|...+|.+||++.++++.+
T Consensus 142 ~~~i~~cl~~~p~~Rp~~~~ll~~~ 166 (176)
T smart00750 142 ADFMRVCASRLPQRREAANHYLAHC 166 (176)
T ss_pred HHHHHHHHhcccccccCHHHHHHHH
Confidence 3344449999999999999998875
No 147
>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto
Probab=71.10 E-value=3.2 Score=34.48 Aligned_cols=28 Identities=25% Similarity=0.574 Sum_probs=23.3
Q ss_pred HHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 186 SIMGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 186 ~l~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
++..+...|.+.+|.+||++.+|+++|+
T Consensus 304 ~~~~l~~~cl~~~p~~RPs~~ell~~l~ 331 (337)
T cd05054 304 EIYSIMLDCWHNNPEDRPTFSELVEILG 331 (337)
T ss_pred HHHHHHHHHccCChhhCcCHHHHHHHHH
Confidence 3445556699999999999999999986
No 148
>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src. Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo
Probab=70.75 E-value=6.7 Score=30.91 Aligned_cols=26 Identities=23% Similarity=0.493 Sum_probs=21.9
Q ss_pred HHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
..+...|...+|.+||++.++.++|+
T Consensus 233 ~~li~~~l~~~p~~Rp~~~~~~~~l~ 258 (262)
T cd05071 233 HDLMCQCWRKEPEERPTFEYLQAFLE 258 (262)
T ss_pred HHHHHHHccCCcccCCCHHHHHHHHH
Confidence 34444599999999999999999986
No 149
>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept
Probab=70.15 E-value=3.8 Score=33.27 Aligned_cols=26 Identities=23% Similarity=0.553 Sum_probs=21.7
Q ss_pred HHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742 189 GVAFPCLNESPVSRPTMQTVSQQLQI 214 (214)
Q Consensus 189 ~~~l~C~~~~p~~Rp~m~~V~~~L~~ 214 (214)
.....|...+|.+||++.+|+++|++
T Consensus 275 ~li~~cl~~~p~~Rpt~~ell~~l~~ 300 (302)
T cd05055 275 DIMKTCWDADPLKRPTFKQIVQLIGK 300 (302)
T ss_pred HHHHHHcCCCchhCcCHHHHHHHHHh
Confidence 34444999999999999999999864
No 150
>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4. Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s
Probab=69.98 E-value=4.5 Score=32.01 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=22.5
Q ss_pred HHHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQQLQI 214 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~~ 214 (214)
......|+..+|.+||++.++.++|+|
T Consensus 249 ~~~i~~~l~~~p~~Rp~~~~~l~~l~~ 275 (275)
T cd05046 249 YKLMTRCWAVNPKDRPSFSELVSALGE 275 (275)
T ss_pred HHHHHHHcCCCcccCCCHHHHHHHhcC
Confidence 344445999999999999999999875
No 151
>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1. Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a
Probab=69.80 E-value=4.1 Score=32.57 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=21.9
Q ss_pred HHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
......|.+.+|.+||++.+|++.|+
T Consensus 256 ~~li~~~l~~~p~~Rpt~~~il~~l~ 281 (284)
T cd05079 256 YQLMRKCWEFQPSKRTTFQNLIEGFE 281 (284)
T ss_pred HHHHHHHccCCcccCcCHHHHHHHHH
Confidence 34444599999999999999999886
No 152
>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]
Probab=69.35 E-value=8.9 Score=32.36 Aligned_cols=39 Identities=31% Similarity=0.601 Sum_probs=30.2
Q ss_pred hhcCCCCCCCcchhHHHHHHHHHHhhcccCCCCCCCCCHHHHHH
Q 035742 167 EMLDPRLPTSSCSVQEKLISIMGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 167 ~~l~~~lp~~~~~~~~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
+.-.+++|...++ ..+..++.. |++.+|.+||+.+++.+
T Consensus 296 ~~ppP~lP~~~fS--~ef~~FV~~---CL~Kdp~~R~s~~qLl~ 334 (364)
T KOG0581|consen 296 DEPPPRLPEGEFS--PEFRSFVSC---CLRKDPSERPSAKQLLQ 334 (364)
T ss_pred cCCCCCCCcccCC--HHHHHHHHH---HhcCCcccCCCHHHHhc
Confidence 3345677777555 677778887 99999999999998764
No 153
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=69.13 E-value=2.6 Score=34.93 Aligned_cols=37 Identities=30% Similarity=0.284 Sum_probs=16.4
Q ss_pred CCCCcEEeCcCC-cCcCCChhhhhCCcccceeeccccc
Q 035742 71 FPQLVHLDLSLN-GFLGTIPSQIGNLSKLSYISLQSNQ 107 (214)
Q Consensus 71 l~~L~~L~l~~n-~l~~~~p~~~~~l~~L~~L~ls~N~ 107 (214)
.++|..|||+.| .++...-..|..++.|++|.++.+.
T Consensus 312 cp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred CCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence 445555555533 2333333344444555555444443
No 154
>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp
Probab=68.82 E-value=3.7 Score=34.08 Aligned_cols=26 Identities=23% Similarity=0.524 Sum_probs=22.0
Q ss_pred HHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
......|...+|.+||++.+|++.|+
T Consensus 312 ~~~~~~cl~~~p~~Rps~~eil~~l~ 337 (343)
T cd05103 312 YQTMLDCWHGEPSQRPTFSELVEHLG 337 (343)
T ss_pred HHHHHHHccCChhhCcCHHHHHHHHH
Confidence 44445699999999999999999886
No 155
>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt
Probab=68.25 E-value=4.4 Score=32.35 Aligned_cols=26 Identities=27% Similarity=0.569 Sum_probs=21.3
Q ss_pred HHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
..+...|...+|.+||++.+|++.|.
T Consensus 249 ~~li~~cl~~~p~~Rps~~~il~~L~ 274 (274)
T cd05076 249 ATLISQCLTYEPTQRPSFRTILRDLT 274 (274)
T ss_pred HHHHHHHcccChhhCcCHHHHHHhhC
Confidence 33444599999999999999999873
No 156
>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase
Probab=68.24 E-value=4.9 Score=31.60 Aligned_cols=29 Identities=31% Similarity=0.518 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
..+.+++. .|...+|.+||++.+|.+.|+
T Consensus 235 ~~~~~li~---~cl~~~p~~Rp~~~~vl~~~~ 263 (267)
T cd08228 235 EKLRELVS---MCIYPDPDQRPDIGYVHQIAK 263 (267)
T ss_pred HHHHHHHH---HHCCCCcccCcCHHHHHHHHH
Confidence 33444444 499999999999999999876
No 157
>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti
Probab=68.15 E-value=5.7 Score=30.99 Aligned_cols=26 Identities=15% Similarity=0.419 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHH
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
..+.+++.. |.+.+|.+||+|.+|++
T Consensus 227 ~~~~~li~~---~l~~~p~~Rp~~~~vl~ 252 (256)
T cd08218 227 YDLRNLVSQ---LFKRNPRDRPSVNSILE 252 (256)
T ss_pred HHHHHHHHH---HhhCChhhCcCHHHHhh
Confidence 334444444 88999999999999986
No 158
>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=68.13 E-value=4.1 Score=33.23 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=21.2
Q ss_pred HHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 189 GVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 189 ~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
.....|+..+|.+||++.+|.+.|+
T Consensus 267 ~li~~cl~~~p~~Rps~~~ll~~l~ 291 (314)
T cd05099 267 MLMRECWHAVPTQRPTFKQLVEALD 291 (314)
T ss_pred HHHHHHcCCCcccCcCHHHHHHHHH
Confidence 3444599999999999999999886
No 159
>smart00219 TyrKc Tyrosine kinase, catalytic domain. Phosphotransferases. Tyrosine-specific kinase subfamily.
Probab=68.13 E-value=7 Score=30.30 Aligned_cols=24 Identities=29% Similarity=0.607 Sum_probs=19.9
Q ss_pred HHhhcccCCCCCCCCCHHHHHHHh
Q 035742 189 GVAFPCLNESPVSRPTMQTVSQQL 212 (214)
Q Consensus 189 ~~~l~C~~~~p~~Rp~m~~V~~~L 212 (214)
.....|+..+|.+||++.++.++|
T Consensus 235 ~~i~~~l~~~p~~Rpt~~~ll~~l 258 (258)
T smart00219 235 KLMLQCWAEDPEDRPTFSELVEIL 258 (258)
T ss_pred HHHHHHCcCChhhCcCHHHHHhhC
Confidence 344459999999999999999875
No 160
>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa. Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho
Probab=68.05 E-value=6.9 Score=30.77 Aligned_cols=29 Identities=17% Similarity=0.362 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
..+.+++.. |...+|.+||++.+|.+.|+
T Consensus 225 ~~l~~li~~---c~~~~~~~Rp~~~~i~~~l~ 253 (257)
T cd05115 225 PEMYALMKD---CWIYKWEDRPNFAKVEERMR 253 (257)
T ss_pred HHHHHHHHH---HcCCChhhCcCHHHHHHHHh
Confidence 444444444 99999999999999999986
No 161
>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1. Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25
Probab=67.71 E-value=12 Score=29.64 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=18.7
Q ss_pred HHhhcccCCCCCCCCCHHHHHHH
Q 035742 189 GVAFPCLNESPVSRPTMQTVSQQ 211 (214)
Q Consensus 189 ~~~l~C~~~~p~~Rp~m~~V~~~ 211 (214)
..-..|...+|.+||+|.+|+..
T Consensus 231 ~li~~~l~~~p~~Rp~~~~il~~ 253 (277)
T cd06642 231 EFVEACLNKDPRFRPTAKELLKH 253 (277)
T ss_pred HHHHHHccCCcccCcCHHHHHHh
Confidence 33445999999999999999863
No 162
>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi
Probab=67.44 E-value=6.6 Score=30.55 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=18.6
Q ss_pred HHhhcccCCCCCCCCCHHHHHHH
Q 035742 189 GVAFPCLNESPVSRPTMQTVSQQ 211 (214)
Q Consensus 189 ~~~l~C~~~~p~~Rp~m~~V~~~ 211 (214)
.+...|+..+|.+||+|.+|++.
T Consensus 240 ~l~~~~l~~~p~~Rp~~~~il~~ 262 (265)
T cd08217 240 EVIKSMLNVDPDKRPSTEELLQL 262 (265)
T ss_pred HHHHHHccCCcccCCCHHHHhhC
Confidence 34445999999999999999863
No 163
>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases. Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include
Probab=66.82 E-value=8.3 Score=30.84 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=18.8
Q ss_pred HHHhhcccCCCCCCCCCHHHHHH
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
...-..|+..+|.+||+|.+|+.
T Consensus 243 ~~li~~~l~~~p~~Rpt~~eil~ 265 (287)
T cd06621 243 KDFIKQCLEKDPTRRPTPWDMLE 265 (287)
T ss_pred HHHHHHHcCCCcccCCCHHHHHh
Confidence 34445599999999999999976
No 164
>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk. Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr
Probab=65.99 E-value=5.3 Score=31.32 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=21.7
Q ss_pred HHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
......|...+|.+||++.++.+.|+
T Consensus 233 ~~li~~~l~~~p~~Rp~~~~l~~~l~ 258 (260)
T cd05067 233 YELMRLCWKEKPEERPTFEYLRSVLE 258 (260)
T ss_pred HHHHHHHccCChhhCCCHHHHHHHhh
Confidence 34444599999999999999999986
No 165
>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1. Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.
Probab=64.91 E-value=5.3 Score=32.20 Aligned_cols=25 Identities=28% Similarity=0.557 Sum_probs=21.0
Q ss_pred HHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 189 GVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 189 ~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
.....|...+|.+||++.+|+++|+
T Consensus 249 ~li~~~l~~~p~~Rp~~~~i~~~l~ 273 (297)
T cd05089 249 ELMRQCWRDRPYERPPFAQISVQLS 273 (297)
T ss_pred HHHHHHcCCChhhCcCHHHHHHHHH
Confidence 4444599999999999999998875
No 166
>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t
Probab=64.69 E-value=6.2 Score=30.88 Aligned_cols=26 Identities=23% Similarity=0.576 Sum_probs=21.6
Q ss_pred HHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
......|+..+|.+||+++++.+.|+
T Consensus 234 ~~~i~~~l~~~p~~Rp~~~~l~~~l~ 259 (261)
T cd05034 234 YDLMLQCWDKDPEERPTFEYLQSFLE 259 (261)
T ss_pred HHHHHHHcccCcccCCCHHHHHHHHh
Confidence 34444599999999999999999886
No 167
>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=64.12 E-value=5 Score=33.05 Aligned_cols=26 Identities=23% Similarity=0.501 Sum_probs=21.9
Q ss_pred HHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
..+...|...+|.+||+|.++++.|+
T Consensus 266 ~~li~~cl~~~p~~Rps~~ell~~l~ 291 (334)
T cd05100 266 YMIMRECWHAVPSQRPTFKQLVEDLD 291 (334)
T ss_pred HHHHHHHcccChhhCcCHHHHHHHHH
Confidence 34445599999999999999999886
No 168
>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins. Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of
Probab=63.78 E-value=13 Score=28.98 Aligned_cols=28 Identities=21% Similarity=0.540 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCHHHHHHH
Q 035742 181 QEKLISIMGVAFPCLNESPVSRPTMQTVSQQ 211 (214)
Q Consensus 181 ~~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~ 211 (214)
...+.+++.. |+..+|.+||++.++++.
T Consensus 229 ~~~l~~li~~---~l~~~p~~R~~~~~ll~~ 256 (264)
T cd06623 229 SPEFRDFISA---CLQKDPKKRPSAAELLQH 256 (264)
T ss_pred CHHHHHHHHH---HccCChhhCCCHHHHHhC
Confidence 3455555555 889999999999999863
No 169
>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase. Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa
Probab=63.38 E-value=6.7 Score=30.77 Aligned_cols=25 Identities=24% Similarity=0.598 Sum_probs=21.3
Q ss_pred HHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 189 GVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 189 ~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
..-..|.+.+|.+||++.+|.++|+
T Consensus 234 ~~i~~~l~~~p~~Rp~~~~l~~~L~ 258 (260)
T cd05073 234 NIMMRCWKNRPEERPTFEYIQSVLD 258 (260)
T ss_pred HHHHHHcccCcccCcCHHHHHHHHh
Confidence 3344599999999999999999986
No 170
>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase. Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions
Probab=63.34 E-value=9.2 Score=30.13 Aligned_cols=29 Identities=31% Similarity=0.549 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
..+.+++. .|...+|.+||++.++.++|+
T Consensus 235 ~~~~~li~---~~l~~~P~~Rpt~~~~~~~l~ 263 (270)
T cd05056 235 PTLYSLMT---KCWAYDPSKRPRFTELKAQLS 263 (270)
T ss_pred HHHHHHHH---HHcCCChhhCcCHHHHHHHHH
Confidence 44455444 499999999999999999886
No 171
>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases. Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki
Probab=62.20 E-value=6.4 Score=30.67 Aligned_cols=26 Identities=19% Similarity=0.511 Sum_probs=21.3
Q ss_pred HHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
...-..|...+|.+||++.+|.++|.
T Consensus 234 ~~li~~~l~~~p~~Rpt~~~il~~l~ 259 (259)
T cd05037 234 ANLINQCWTYDPTKRPSFRAILRDLN 259 (259)
T ss_pred HHHHHHHhccChhhCCCHHHHHHhcC
Confidence 34444599999999999999999874
No 172
>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage
Probab=61.74 E-value=9.4 Score=30.18 Aligned_cols=19 Identities=37% Similarity=0.553 Sum_probs=16.2
Q ss_pred ccCCCCCCCCCHHHHHHHhc
Q 035742 194 CLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 194 C~~~~p~~Rp~m~~V~~~L~ 213 (214)
|. .+|.+||++++|+++|.
T Consensus 249 c~-~~P~~Rp~~~~i~~~l~ 267 (268)
T cd05086 249 CW-LSPEKRATAEEVHRLLT 267 (268)
T ss_pred Hh-hCcccCCCHHHHHHHhc
Confidence 66 46999999999999874
No 173
>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase. Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity
Probab=61.38 E-value=15 Score=28.60 Aligned_cols=27 Identities=19% Similarity=0.534 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHHH
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQ 211 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~ 211 (214)
..+.+++.. |...+|.+||++.+++..
T Consensus 231 ~~~~~li~~---~l~~~p~~Rpt~~~ll~~ 257 (265)
T cd06605 231 PDFQDFVNL---CLIKDPRERPSYKELLEH 257 (265)
T ss_pred HHHHHHHHH---HcCCCchhCcCHHHHhhC
Confidence 344445444 999999999999998753
No 174
>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4. Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin
Probab=61.26 E-value=7 Score=31.64 Aligned_cols=27 Identities=19% Similarity=0.367 Sum_probs=22.3
Q ss_pred HHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 187 IMGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 187 l~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
+......|...+|..||+|.+++.+|+
T Consensus 240 ~~~li~~c~~~~p~~Rp~~~~l~~~l~ 266 (303)
T cd05110 240 VYMVMVKCWMIDADSRPKFKELAAEFS 266 (303)
T ss_pred HHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence 344555699999999999999999875
No 175
>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D
Probab=61.11 E-value=6 Score=33.92 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
..+.+++. .|...+|..||++++|+++|+
T Consensus 369 ~~l~~li~---~cl~~~P~~RPs~~ell~~L~ 397 (401)
T cd05107 369 DEIYEIMQ---KCWEEKFEIRPDFSQLVHLVG 397 (401)
T ss_pred HHHHHHHH---HHcCCChhHCcCHHHHHHHHH
Confidence 34444444 499999999999999999986
No 176
>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-
Probab=60.36 E-value=5.9 Score=33.96 Aligned_cols=27 Identities=22% Similarity=0.565 Sum_probs=22.6
Q ss_pred HHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 187 IMGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 187 l~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
+..+...|...+|.+||++.+|+++|+
T Consensus 369 l~~li~~cl~~dP~~RPt~~~l~~~l~ 395 (400)
T cd05105 369 VYDIMVKCWNSEPEKRPSFLHLSDIVE 395 (400)
T ss_pred HHHHHHHHCccCHhHCcCHHHHHHHHH
Confidence 344555699999999999999999986
No 177
>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.
Probab=60.05 E-value=10 Score=29.52 Aligned_cols=22 Identities=18% Similarity=0.451 Sum_probs=18.0
Q ss_pred HHhhcccCCCCCCCCCHHHHHH
Q 035742 189 GVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 189 ~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
.....|...+|.+||++++++.
T Consensus 232 ~li~~~l~~~p~~Rp~~~~~l~ 253 (257)
T cd08223 232 ELIATMLSKRPEKRPSVKSILR 253 (257)
T ss_pred HHHHHHhccCcccCCCHHHHhc
Confidence 3444499999999999999875
No 178
>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]
Probab=60.01 E-value=13 Score=29.99 Aligned_cols=29 Identities=28% Similarity=0.457 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
+.+.+++.- |++.+|.+||+..++...++
T Consensus 270 e~l~~lik~---mlqvdP~qRP~i~~ll~~~d 298 (302)
T KOG2345|consen 270 EALHQLIKS---MLQVDPNQRPTIPELLSKLD 298 (302)
T ss_pred HHHHHHHHH---HhcCCcccCCCHHHHHHHHH
Confidence 444455444 99999999999999998875
No 179
>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2. Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A
Probab=59.47 E-value=7.4 Score=31.52 Aligned_cols=26 Identities=23% Similarity=0.497 Sum_probs=21.5
Q ss_pred HHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
..+...|...+|.+||++.+++.+|+
T Consensus 253 ~~li~~~l~~~p~~Rp~~~~il~~l~ 278 (303)
T cd05088 253 YDLMRQCWREKPYERPSFAQILVSLN 278 (303)
T ss_pred HHHHHHHcCCChhhCcCHHHHHHHHH
Confidence 34445599999999999999998874
No 180
>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1. Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom
Probab=59.07 E-value=7.5 Score=30.69 Aligned_cols=26 Identities=19% Similarity=0.515 Sum_probs=21.0
Q ss_pred HHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
..+-..|...+|.+||++.++.+++.
T Consensus 237 ~~li~~cl~~dp~~Rp~~~~il~~~~ 262 (262)
T cd05077 237 ADLMTHCMNYDPNQRPFFRAIMRDIN 262 (262)
T ss_pred HHHHHHHcCCChhhCcCHHHHHHhcC
Confidence 34444599999999999999998763
No 181
>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells
Probab=58.07 E-value=11 Score=29.69 Aligned_cols=28 Identities=25% Similarity=0.521 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
+.+.++... |. .+|.+||++.+|+.+|.
T Consensus 241 ~~~~~l~~~---c~-~~P~~Rpt~~~l~~~l~ 268 (269)
T cd05087 241 DRWYEVMQF---CW-LQPEQRPSAEEVHLLLS 268 (269)
T ss_pred hHHHHHHHH---Hh-cCcccCCCHHHHHHHhc
Confidence 344445543 65 47999999999999875
No 182
>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa
Probab=57.56 E-value=13 Score=29.00 Aligned_cols=28 Identities=36% Similarity=0.521 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHHHh
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQL 212 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L 212 (214)
..+..++. .|.+.+|.+||++.++++.+
T Consensus 227 ~~~~~~i~---~~l~~~p~~R~s~~~ll~~~ 254 (256)
T cd08221 227 SELISLVH---SLLQQDPEKRPTADEVLDQP 254 (256)
T ss_pred HHHHHHHH---HHcccCcccCCCHHHHhhCc
Confidence 44444444 49999999999999998764
No 183
>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int
Probab=57.28 E-value=21 Score=28.20 Aligned_cols=21 Identities=33% Similarity=0.600 Sum_probs=17.7
Q ss_pred HhhcccCCCCCCCCCHHHHHH
Q 035742 190 VAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 190 ~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
....|.+.+|..||+|++++.
T Consensus 232 ~i~~~l~~~p~~Rp~~~~~l~ 252 (277)
T cd06641 232 FVEACLNKEPSFRPTAKELLK 252 (277)
T ss_pred HHHHHccCChhhCcCHHHHHh
Confidence 334499999999999999986
No 184
>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate
Probab=55.67 E-value=22 Score=27.82 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHH
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
..+.+++. .|...+|.+||++.+|.+
T Consensus 238 ~~~~~li~---~~l~~~p~~Rp~~~~il~ 263 (267)
T cd06628 238 SEAIDFLE---KTFEIDHNKRPTAAELLK 263 (267)
T ss_pred HHHHHHHH---HHccCCchhCcCHHHHhh
Confidence 44444554 489999999999999875
No 185
>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)
Probab=55.08 E-value=20 Score=28.19 Aligned_cols=19 Identities=32% Similarity=0.662 Sum_probs=16.4
Q ss_pred hcccCCCCCCCCCHHHHHH
Q 035742 192 FPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 192 l~C~~~~p~~Rp~m~~V~~ 210 (214)
..|+..+|.+||+++++++
T Consensus 232 ~~~l~~~p~~Rpt~~~il~ 250 (274)
T cd06609 232 SLCLNKDPKERPSAKELLK 250 (274)
T ss_pred HHHhhCChhhCcCHHHHhh
Confidence 3489999999999999975
No 186
>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.
Probab=54.71 E-value=14 Score=28.71 Aligned_cols=18 Identities=22% Similarity=0.516 Sum_probs=16.0
Q ss_pred cccCCCCCCCCCHHHHHH
Q 035742 193 PCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 193 ~C~~~~p~~Rp~m~~V~~ 210 (214)
.|...+|.+||++.+|.+
T Consensus 236 ~~l~~~p~~Rpt~~~ll~ 253 (257)
T cd08225 236 QLFKVSPRDRPSITSILK 253 (257)
T ss_pred HHhccChhhCcCHHHHhh
Confidence 488889999999999975
No 187
>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor
Probab=54.68 E-value=10 Score=30.94 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=21.6
Q ss_pred HHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
......|...+|..||++.++...|.
T Consensus 241 ~~li~~cl~~~p~~Rps~~~l~~~l~ 266 (316)
T cd05108 241 YMIMVKCWMIDADSRPKFRELIIEFS 266 (316)
T ss_pred HHHHHHHccCChhhCcCHHHHHHHHH
Confidence 44445699999999999999998865
No 188
>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=54.13 E-value=20 Score=29.89 Aligned_cols=33 Identities=21% Similarity=0.520 Sum_probs=24.0
Q ss_pred CCCCCcchhHHHHHHHHHHhhcccCCCCCCCCCHHHHHH
Q 035742 172 RLPTSSCSVQEKLISIMGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 172 ~lp~~~~~~~~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
.+|..+ .....+++.. |+..+|.+||++.+..+
T Consensus 243 ~ip~~l---s~~a~~Fl~~---C~~~~p~~Rpta~eLL~ 275 (313)
T KOG0198|consen 243 EIPDSL---SDEAKDFLRK---CFKRDPEKRPTAEELLE 275 (313)
T ss_pred CCCccc---CHHHHHHHHH---HhhcCcccCcCHHHHhh
Confidence 555554 3444556666 99999999999998765
No 189
>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2. Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve
Probab=54.09 E-value=11 Score=29.94 Aligned_cols=26 Identities=12% Similarity=0.308 Sum_probs=21.4
Q ss_pred HHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
......|...+|.+||++.++.+.|+
T Consensus 241 ~~li~~~l~~dp~~Rp~~~~l~~~l~ 266 (279)
T cd05109 241 YMIMVKCWMIDSECRPRFRELVDEFS 266 (279)
T ss_pred HHHHHHHcCCChhhCcCHHHHHHHHH
Confidence 34444599999999999999998875
No 190
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=53.97 E-value=1.1 Score=36.93 Aligned_cols=55 Identities=27% Similarity=0.294 Sum_probs=22.7
Q ss_pred CcEEeCcCCcCcCC-ChhhhhCCcccceeeccccccccCCCccccccccchhhhcc
Q 035742 74 LVHLDLSLNGFLGT-IPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQ 128 (214)
Q Consensus 74 L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~ 128 (214)
|+++||++..++.. +-.-+..+..|+.|.+.++++...+-..+.+-..|+.|+++
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnls 242 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLS 242 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccc
Confidence 55555555444311 11123344444444444444444333333333334444333
No 191
>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily.
Probab=53.86 E-value=11 Score=28.64 Aligned_cols=24 Identities=21% Similarity=0.133 Sum_probs=19.4
Q ss_pred HHHHhhcccCCCCCCCCCHHHHHH
Q 035742 187 IMGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 187 l~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
+......|...+|.+||++.++++
T Consensus 217 ~~~~i~~~l~~~p~~Rp~~~~~~~ 240 (244)
T smart00220 217 AKDLIRKLLVKDPEKRLTAEEALQ 240 (244)
T ss_pred HHHHHHHHccCCchhccCHHHHhh
Confidence 344445599999999999999986
No 192
>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase. Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina
Probab=48.55 E-value=21 Score=28.06 Aligned_cols=20 Identities=20% Similarity=0.483 Sum_probs=17.2
Q ss_pred hhcccCCCCCCCCCHHHHHH
Q 035742 191 AFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 191 ~l~C~~~~p~~Rp~m~~V~~ 210 (214)
...|+..+|.+||++.+|+.
T Consensus 245 i~~~l~~~p~~Rpt~~~ll~ 264 (268)
T cd06624 245 ILRCFEPDPDKRASAHDLLQ 264 (268)
T ss_pred HHHHcCCCchhCCCHHHHHh
Confidence 34599999999999999875
No 193
>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains. Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an
Probab=48.51 E-value=24 Score=27.28 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=18.2
Q ss_pred HHHhhcccCCCCCCCCCHHHHHH
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
..+-..|+..+|.+||++.++.+
T Consensus 230 ~~li~~~l~~~p~~Rp~~~~~l~ 252 (256)
T cd08530 230 QNFIRSMLQVKPKLRPNCDKILA 252 (256)
T ss_pred HHHHHHHcCCCcccCCCHHHHhc
Confidence 33444599999999999999874
No 194
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=47.99 E-value=11 Score=39.88 Aligned_cols=32 Identities=28% Similarity=0.339 Sum_probs=28.0
Q ss_pred EecCCCCccccCccccCCCCCCcEEeCcCCcCc
Q 035742 53 SLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFL 85 (214)
Q Consensus 53 ~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~ 85 (214)
||++|+|+ .+|...|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCccc
Confidence 58899999 777578999999999999999885
No 195
>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati
Probab=47.72 E-value=20 Score=27.80 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=16.9
Q ss_pred cccCCCCCCCCCHHHHHHH
Q 035742 193 PCLNESPVSRPTMQTVSQQ 211 (214)
Q Consensus 193 ~C~~~~p~~Rp~m~~V~~~ 211 (214)
.|...+|.+||++.++...
T Consensus 234 ~~l~~~P~~Rp~~~~il~~ 252 (255)
T cd08219 234 QMFKRNPRSRPSATTILSR 252 (255)
T ss_pred HHHhCCcccCCCHHHHhhc
Confidence 4899999999999999865
No 196
>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter
Probab=47.72 E-value=25 Score=27.85 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=18.5
Q ss_pred HHHhhcccCCCCCCCCCHHHHHH
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
...-..|...+|.+||++.+|+.
T Consensus 230 ~~li~~~l~~~p~~Rp~~~~il~ 252 (277)
T cd06640 230 KEFIDACLNKDPSFRPTAKELLK 252 (277)
T ss_pred HHHHHHHcccCcccCcCHHHHHh
Confidence 34444599999999999999965
No 197
>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK
Probab=47.40 E-value=23 Score=27.21 Aligned_cols=26 Identities=31% Similarity=0.567 Sum_probs=20.2
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHH
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
..+.+++. .|+..+|.+||++.+++.
T Consensus 231 ~~l~~~i~---~~l~~~p~~Rp~~~~ll~ 256 (260)
T cd06606 231 EEAKDFLR---KCLRRDPKKRPTADELLQ 256 (260)
T ss_pred HHHHHHHH---HhCcCChhhCCCHHHHhh
Confidence 44455554 499999999999999875
No 198
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=46.60 E-value=14 Score=33.14 Aligned_cols=11 Identities=36% Similarity=0.513 Sum_probs=5.2
Q ss_pred cccceeecccc
Q 035742 96 SKLSYISLQSN 106 (214)
Q Consensus 96 ~~L~~L~ls~N 106 (214)
+.|..|+|++|
T Consensus 244 pklk~L~LS~N 254 (585)
T KOG3763|consen 244 PKLKTLDLSHN 254 (585)
T ss_pred chhheeecccc
Confidence 44444444444
No 199
>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity. Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....
Probab=45.70 E-value=16 Score=28.34 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=19.8
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHH
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
..+.+++.. |+..+|.+||++.++++
T Consensus 231 ~~l~~li~~---~l~~~p~~R~~~~~l~~ 256 (260)
T PF00069_consen 231 EELRDLIKK---MLSKDPEQRPSAEELLK 256 (260)
T ss_dssp HHHHHHHHH---HSSSSGGGSTTHHHHHT
T ss_pred HHHHHHHHH---HccCChhHCcCHHHHhc
Confidence 344444444 89999999999999875
No 200
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=45.28 E-value=35 Score=28.29 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=20.1
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHH
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
..+.+++.. |+..+|.+||++.+|++
T Consensus 302 ~~l~~li~~---~l~~~P~~Rpt~~ell~ 327 (353)
T PLN00034 302 REFRHFISC---CLQREPAKRWSAMQLLQ 327 (353)
T ss_pred HHHHHHHHH---HccCChhhCcCHHHHhc
Confidence 344455544 99999999999999875
No 201
>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc
Probab=45.04 E-value=14 Score=29.34 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=18.5
Q ss_pred HHHhhcccCCCCCCCCCHHHHHH
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
......|.+.+|.+||++++|.+
T Consensus 257 ~~li~~~l~~~P~~Rpt~~~il~ 279 (283)
T cd07835 257 LDLLSKMLVYDPAKRISAKAALQ 279 (283)
T ss_pred HHHHHHHhcCChhhCcCHHHHhc
Confidence 34444599999999999999875
No 202
>PHA02882 putative serine/threonine kinase; Provisional
Probab=44.95 E-value=35 Score=27.41 Aligned_cols=29 Identities=7% Similarity=0.133 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
..+.++... |...++.+||++.++.+.++
T Consensus 266 ~~~~~~~~~---~~~~~~~~rp~~~~l~~~~~ 294 (294)
T PHA02882 266 KFIYDFIEC---VTKLSYEEKPDYDALIKIFD 294 (294)
T ss_pred HHHHHHHHH---HHhCCCCCCCCHHHHHHhhC
Confidence 444555555 88899999999999998763
No 203
>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases. Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include
Probab=44.73 E-value=14 Score=29.45 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=18.6
Q ss_pred HhhcccCCCCCCCCCHHHHHHH
Q 035742 190 VAFPCLNESPVSRPTMQTVSQQ 211 (214)
Q Consensus 190 ~~l~C~~~~p~~Rp~m~~V~~~ 211 (214)
....|...+|.+||++.+|.++
T Consensus 245 li~~~l~~dp~~Rpt~~e~~~~ 266 (284)
T cd06620 245 FVDACLLKDPTERPTPQQLCAM 266 (284)
T ss_pred HHHHHhcCCcccCcCHHHHhcC
Confidence 3345999999999999999876
No 204
>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated
Probab=44.06 E-value=21 Score=28.01 Aligned_cols=27 Identities=19% Similarity=0.431 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHHH
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQ 211 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~ 211 (214)
..+.+++.. |...+|.+||++.++++-
T Consensus 239 ~~~~~li~~---~l~~~P~~Rp~~~~il~~ 265 (267)
T cd06646 239 STFHNFVKI---SLTKNPKKRPTAERLLTH 265 (267)
T ss_pred HHHHHHHHH---HhhCChhhCcCHHHHhcC
Confidence 344445444 899999999999998764
No 205
>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with
Probab=43.89 E-value=24 Score=27.26 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=16.7
Q ss_pred hcccCCCCCCCCCHHHHHH
Q 035742 192 FPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 192 l~C~~~~p~~Rp~m~~V~~ 210 (214)
..|...+|.+||++.++..
T Consensus 234 ~~~l~~~p~~Rpt~~~ll~ 252 (256)
T cd08220 234 LSMLNLDPSKRPQLSQIMA 252 (256)
T ss_pred HHHccCChhhCCCHHHHhh
Confidence 3489999999999999875
No 206
>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili
Probab=43.70 E-value=21 Score=28.17 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=19.6
Q ss_pred HHHHhhcccCCCCCCCCCHHHHHH
Q 035742 187 IMGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 187 l~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
+......|...+|.+||++++++.
T Consensus 256 ~~~li~~cl~~~p~~Rpt~~ei~~ 279 (283)
T cd07830 256 AIDLIKDMLRWDPKKRPTASQALQ 279 (283)
T ss_pred HHHHHHHhcccCcccCCCHHHHhh
Confidence 345555699999999999999975
No 207
>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI
Probab=43.28 E-value=17 Score=28.77 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=18.4
Q ss_pred HHHhhcccCCCCCCCCCHHHHHH
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
..+...|...+|.+||+|.+++.
T Consensus 260 ~~li~~~l~~~P~~Rp~~~~il~ 282 (286)
T cd07846 260 LDLAKQCLRIDPDDRPSSSQLLH 282 (286)
T ss_pred HHHHHHHhcCCcccchhHHHHhc
Confidence 34444599999999999999874
No 208
>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I
Probab=42.95 E-value=21 Score=27.92 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=16.7
Q ss_pred hcccCCCCCCCCCHHHHHH
Q 035742 192 FPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 192 l~C~~~~p~~Rp~m~~V~~ 210 (214)
..|+..+|.+||++.+|++
T Consensus 253 ~~~l~~dp~~Rpt~~~ll~ 271 (275)
T cd06608 253 SECLIKNYEQRPFMEELLE 271 (275)
T ss_pred HHHhhcChhhCcCHHHHhc
Confidence 3499999999999999975
No 209
>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea
Probab=42.75 E-value=22 Score=28.14 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=21.3
Q ss_pred HHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
...-..|...+|..||++.++.++|+
T Consensus 241 ~~~~~~~l~~~p~~Rp~~~~l~~~l~ 266 (279)
T cd05057 241 YMVLVKCWMIDAESRPTFKELINEFS 266 (279)
T ss_pred HHHHHHHcCCChhhCCCHHHHHHHHH
Confidence 34444699999999999999999875
No 210
>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They
Probab=42.29 E-value=21 Score=28.11 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=19.3
Q ss_pred HHHHhhcccCCCCCCCCCHHHHHH
Q 035742 187 IMGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 187 l~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
+.+.-..|...+|.+||++.+++.
T Consensus 256 ~~~~i~~~l~~~P~~Rp~~~~ll~ 279 (283)
T cd05118 256 ALDLLSQMLHYDPHKRITAEQALA 279 (283)
T ss_pred HHHHHHHHhccCcccCcCHHHHhh
Confidence 344445599999999999999975
No 211
>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t
Probab=42.14 E-value=47 Score=25.75 Aligned_cols=27 Identities=11% Similarity=0.220 Sum_probs=20.2
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHHH
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQ 211 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~ 211 (214)
..+.+++.. |...+|.+||++.++++.
T Consensus 234 ~~~~~li~~---~l~~~p~~Rpt~~~ll~~ 260 (263)
T cd06625 234 PDARNFLRR---TFVENAKKRPSAEELLRH 260 (263)
T ss_pred HHHHHHHHH---HhhcCcccCCCHHHHhhC
Confidence 344444444 899999999999999764
No 212
>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin. Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear
Probab=42.00 E-value=23 Score=28.08 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=18.5
Q ss_pred HHhhcccCCCCCCCCCHHHHHHH
Q 035742 189 GVAFPCLNESPVSRPTMQTVSQQ 211 (214)
Q Consensus 189 ~~~l~C~~~~p~~Rp~m~~V~~~ 211 (214)
.+-..|...+|.+||++++|++-
T Consensus 261 ~li~~~l~~~p~~Rps~~ell~~ 283 (286)
T cd06638 261 DFIRKCLTKDYEKRPTVSDLLQH 283 (286)
T ss_pred HHHHHHccCCcccCCCHHHHhhc
Confidence 33344999999999999999864
No 213
>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina
Probab=41.91 E-value=34 Score=26.81 Aligned_cols=19 Identities=37% Similarity=0.679 Sum_probs=16.1
Q ss_pred ccCCCCCCCCCHHHHHHHhc
Q 035742 194 CLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 194 C~~~~p~~Rp~m~~V~~~L~ 213 (214)
|. .+|.+||++.+|.++|.
T Consensus 250 ~~-~dp~~Rpt~~~v~~~l~ 268 (269)
T cd05042 250 CW-LDPETRPTAEEVHELLT 268 (269)
T ss_pred Hh-cCcccccCHHHHHHHhc
Confidence 44 48999999999999874
No 214
>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex
Probab=41.78 E-value=26 Score=27.66 Aligned_cols=19 Identities=16% Similarity=0.132 Sum_probs=16.3
Q ss_pred hcccCCCCCCCCCHHHHHH
Q 035742 192 FPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 192 l~C~~~~p~~Rp~m~~V~~ 210 (214)
..|.+.+|.+||++++++.
T Consensus 262 ~~~l~~~P~~Rpt~~~~l~ 280 (284)
T cd07860 262 SQMLHYDPNKRISAKAALA 280 (284)
T ss_pred HHhcCCCcccCCCHHHHhc
Confidence 3489999999999999874
No 215
>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases. Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core
Probab=41.60 E-value=22 Score=27.14 Aligned_cols=26 Identities=23% Similarity=0.595 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHH
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
..+.+++.. |+..+|.+||++.+|.+
T Consensus 225 ~~~~~~i~~---~l~~~p~~R~t~~~~l~ 250 (253)
T cd05122 225 DEFKDFLKK---CLQKNPEKRPTAEQLLK 250 (253)
T ss_pred HHHHHHHHH---HccCChhhCCCHHHHhc
Confidence 444555544 99999999999999875
No 216
>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both
Probab=40.58 E-value=30 Score=27.30 Aligned_cols=21 Identities=19% Similarity=0.064 Sum_probs=17.3
Q ss_pred HhhcccCCCCCCCCCHHHHHH
Q 035742 190 VAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 190 ~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
.-..|.+.+|.+||++.++..
T Consensus 263 li~~~l~~dp~~Rp~~~~il~ 283 (287)
T cd07838 263 LLKKMLTFNPHKRISAFEALQ 283 (287)
T ss_pred HHHHHhccCCccCCCHHHHhc
Confidence 334599999999999999864
No 217
>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po
Probab=40.02 E-value=22 Score=27.96 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=19.4
Q ss_pred HHHHhhcccCCCCCCCCCHHHHHH
Q 035742 187 IMGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 187 l~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
+......|...+|.+||++.+|++
T Consensus 260 ~~~~i~~~l~~~P~~Rp~~~~~l~ 283 (287)
T cd07840 260 ALDLLDKLLTLDPKKRISADQALQ 283 (287)
T ss_pred HHHHHHHHcCCChhhCcCHHHHhh
Confidence 345555699999999999999875
No 218
>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase. Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1
Probab=39.96 E-value=25 Score=27.31 Aligned_cols=26 Identities=23% Similarity=0.638 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHH
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
..+.+++.. |+..+|.+||++.++++
T Consensus 238 ~~~~~li~~---~l~~~p~~Rp~~~~ll~ 263 (267)
T cd06610 238 KSFRKMISL---CLQKDPSKRPTAEELLK 263 (267)
T ss_pred HHHHHHHHH---HcCCChhhCcCHHHHhh
Confidence 444445444 99999999999999875
No 219
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=39.57 E-value=43 Score=29.33 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHH
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
..+.+++.. |+..+|..||++.+++.
T Consensus 297 ~~~~~li~~---~L~~dP~~Rps~~~~l~ 322 (478)
T PTZ00267 297 SGMKALLDP---LLSKNPALRPTTQQLLH 322 (478)
T ss_pred HHHHHHHHH---HhccChhhCcCHHHHHh
Confidence 444444444 89999999999999864
No 220
>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte
Probab=39.48 E-value=23 Score=27.86 Aligned_cols=26 Identities=23% Similarity=0.515 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHH
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
..+.+++. .|...+|..||+|.+|+.
T Consensus 243 ~~~~~li~---~~l~~~p~~Rps~~~il~ 268 (272)
T cd06629 243 PVALDFLN---ACFTINPDNRPTARELLQ 268 (272)
T ss_pred HHHHHHHH---HHhcCChhhCCCHHHHhh
Confidence 44444444 489999999999999875
No 221
>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4. Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.
Probab=39.29 E-value=33 Score=26.77 Aligned_cols=19 Identities=21% Similarity=0.454 Sum_probs=16.3
Q ss_pred hcccCCCCCCCCCHHHHHH
Q 035742 192 FPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 192 l~C~~~~p~~Rp~m~~V~~ 210 (214)
..|+..+|.+||++.+|.+
T Consensus 243 ~~~l~~~p~~Rp~~~~~l~ 261 (265)
T cd06631 243 TSCLTRDQHERPSALQLLR 261 (265)
T ss_pred HHHhcCCcccCCCHHHHhc
Confidence 3499999999999999864
No 222
>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1. Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron
Probab=38.88 E-value=58 Score=26.44 Aligned_cols=20 Identities=30% Similarity=0.592 Sum_probs=17.5
Q ss_pred hcccCCCCCCCCCHHHHHHH
Q 035742 192 FPCLNESPVSRPTMQTVSQQ 211 (214)
Q Consensus 192 l~C~~~~p~~Rp~m~~V~~~ 211 (214)
..|++.+|..||++.+|.+.
T Consensus 258 ~~~l~~~p~~Rpt~~~il~~ 277 (317)
T cd06635 258 DSCLQKIPQDRPTSEELLKH 277 (317)
T ss_pred HHHccCCcccCcCHHHHHhC
Confidence 35999999999999999874
No 223
>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha. Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype
Probab=38.36 E-value=24 Score=28.90 Aligned_cols=25 Identities=24% Similarity=0.534 Sum_probs=19.3
Q ss_pred HHHHHHHHhhcccCCCCCCCCCHHHHHH
Q 035742 183 KLISIMGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 183 ~L~~l~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
.+.+++.. |++.+|.+||++.+|++
T Consensus 282 ~~~~li~~---~l~~dP~~Rpt~~ell~ 306 (327)
T cd08227 282 HFHHFVEQ---CLQRNPDARPSASTLLN 306 (327)
T ss_pred HHHHHHHH---HHhhCchhcCCHHHHhc
Confidence 34444444 99999999999999975
No 224
>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase. Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ
Probab=38.21 E-value=25 Score=27.61 Aligned_cols=19 Identities=26% Similarity=0.489 Sum_probs=16.6
Q ss_pred hcccCCCCCCCCCHHHHHH
Q 035742 192 FPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 192 l~C~~~~p~~Rp~m~~V~~ 210 (214)
..|...+|.+||++.+|++
T Consensus 250 ~~~l~~~p~~Rpt~~~il~ 268 (272)
T cd06637 250 ESCLVKNHSQRPTTEQLMK 268 (272)
T ss_pred HHHcCCChhhCCCHHHHhh
Confidence 3599999999999999875
No 225
>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning
Probab=38.20 E-value=20 Score=28.41 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=18.4
Q ss_pred HHHhhcccCCCCCCCCCHHHHHH
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
......|...+|.+||++++|+.
T Consensus 262 ~~li~~~l~~~p~~Rps~~~il~ 284 (288)
T cd07833 262 LDFLKACLRMDPKERLTCDELLQ 284 (288)
T ss_pred HHHHHHHhccCchhcccHHHHhc
Confidence 34444599999999999999875
No 226
>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr
Probab=37.50 E-value=28 Score=27.65 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHHH
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQ 211 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~ 211 (214)
..+.+++.. |+..+|.+||+++++++.
T Consensus 224 ~~~~~li~~---~L~~~P~~R~~~~~~~~~ 250 (277)
T cd05607 224 EESKDICRL---FLAKKPEDRLGSREKNDD 250 (277)
T ss_pred HHHHHHHHH---HhccCHhhCCCCccchhh
Confidence 444444444 999999999999776644
No 227
>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is
Probab=37.47 E-value=26 Score=28.02 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=18.7
Q ss_pred HHhhcccCCCCCCCCCHHHHHHH
Q 035742 189 GVAFPCLNESPVSRPTMQTVSQQ 211 (214)
Q Consensus 189 ~~~l~C~~~~p~~Rp~m~~V~~~ 211 (214)
..-..|...+|.+||++++|+..
T Consensus 260 ~li~~~l~~~P~~R~s~~e~l~~ 282 (298)
T cd07841 260 DLLQRLLTLNPNKRITARQALEH 282 (298)
T ss_pred HHHHHHhcCCcccCcCHHHHhhC
Confidence 33444999999999999999864
No 228
>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check
Probab=37.45 E-value=43 Score=26.04 Aligned_cols=18 Identities=28% Similarity=0.534 Sum_probs=15.8
Q ss_pred cccCCCCCCCCCHHHHHH
Q 035742 193 PCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 193 ~C~~~~p~~Rp~m~~V~~ 210 (214)
.|...+|.+||++.++..
T Consensus 239 ~~l~~~p~~Rp~~~~il~ 256 (260)
T cd08222 239 SMLNKDPSLRPSAAEILR 256 (260)
T ss_pred HHhcCChhhCcCHHHHhh
Confidence 488999999999999864
No 229
>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re
Probab=37.40 E-value=21 Score=27.68 Aligned_cols=29 Identities=14% Similarity=0.261 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
..+..++.. |.+.+|.+||++++|.+.|+
T Consensus 228 ~~~~~~i~~---~l~~~p~~Rpt~~~~~~~l~ 256 (265)
T cd05579 228 DEAIDLISK---LLVPDPEKRLGAKSIEEIKN 256 (265)
T ss_pred HHHHHHHHH---HhcCCHhhcCCCccHHHHhc
Confidence 444445544 88999999999977776654
No 230
>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2
Probab=37.29 E-value=22 Score=28.09 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=16.1
Q ss_pred cccCCCCCCCCCHHHHHH
Q 035742 193 PCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 193 ~C~~~~p~~Rp~m~~V~~ 210 (214)
.|++.+|.+||++.+|++
T Consensus 264 ~~l~~dP~~Rpt~~~ll~ 281 (285)
T cd07861 264 KMLIYDPAKRISAKKALN 281 (285)
T ss_pred HHhcCChhhCCCHHHHhc
Confidence 499999999999999874
No 231
>cd00180 PKc Catalytic domain of Protein Kinases. Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which
Probab=37.29 E-value=25 Score=25.67 Aligned_cols=28 Identities=18% Similarity=0.358 Sum_probs=21.9
Q ss_pred HHHHHHhhcccCCCCCCCCCHHHHHHHh
Q 035742 185 ISIMGVAFPCLNESPVSRPTMQTVSQQL 212 (214)
Q Consensus 185 ~~l~~~~l~C~~~~p~~Rp~m~~V~~~L 212 (214)
..+......|...+|.+||++.++++.+
T Consensus 188 ~~~~~~l~~~l~~~p~~R~~~~~l~~~~ 215 (215)
T cd00180 188 PELKDLIRKMLQKDPEKRPSAKEILEHL 215 (215)
T ss_pred HHHHHHHHHHhhCCcccCcCHHHHhhCC
Confidence 3555556669999999999999998653
No 232
>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ
Probab=37.13 E-value=28 Score=26.96 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=17.9
Q ss_pred HHhhcccCCCCCCCCCHHHHHH
Q 035742 189 GVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 189 ~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
..-..|...+|.+||++.+|+.
T Consensus 238 ~li~~~l~~~p~~Rpt~~~il~ 259 (262)
T cd06613 238 DFIKKCLTKDPKKRPTATKLLQ 259 (262)
T ss_pred HHHHHHcCCChhhCCCHHHHhc
Confidence 3344599999999999999875
No 233
>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1. Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops
Probab=37.11 E-value=35 Score=26.33 Aligned_cols=18 Identities=33% Similarity=0.671 Sum_probs=16.0
Q ss_pred cccCCCCCCCCCHHHHHH
Q 035742 193 PCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 193 ~C~~~~p~~Rp~m~~V~~ 210 (214)
.|...+|..||++.+++.
T Consensus 237 ~~l~~~p~~Rp~~~~~l~ 254 (258)
T cd06632 237 KCLQRDPSLRPTAAELLE 254 (258)
T ss_pred HHhhcCcccCcCHHHHhc
Confidence 488999999999999875
No 234
>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase. Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.
Probab=36.78 E-value=27 Score=27.47 Aligned_cols=22 Identities=18% Similarity=0.102 Sum_probs=17.7
Q ss_pred HHhhcccCCCCCCCCCHHHHHH
Q 035742 189 GVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 189 ~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
.+-..|+..+|.+||++.++..
T Consensus 257 ~li~~~l~~~P~~R~~~~~~l~ 278 (282)
T cd07831 257 DLLKKLLAYDPDERITAKQALR 278 (282)
T ss_pred HHHHHHhccCcccccCHHHHhh
Confidence 3334499999999999999875
No 235
>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development
Probab=36.72 E-value=18 Score=28.34 Aligned_cols=18 Identities=17% Similarity=0.407 Sum_probs=15.4
Q ss_pred cccCCCCCCCCCHHHHHH
Q 035742 193 PCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 193 ~C~~~~p~~Rp~m~~V~~ 210 (214)
.|...+|.+||+|++|.+
T Consensus 243 ~~~~~~p~~Rp~~~eil~ 260 (266)
T cd06651 243 GCIFVEARHRPSAEELLR 260 (266)
T ss_pred HHhcCChhhCcCHHHHhc
Confidence 477789999999999975
No 236
>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=36.68 E-value=38 Score=29.96 Aligned_cols=31 Identities=32% Similarity=0.697 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 180 VQEKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 180 ~~~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
.+..+..+.. .|...+|..||+|.+|++.|+
T Consensus 388 ~p~~~~~~~~---~c~~~~p~~R~tm~~i~~~l~ 418 (474)
T KOG0194|consen 388 TPKELAKVMK---QCWKKDPEDRPTMSTIKKKLE 418 (474)
T ss_pred CHHHHHHHHH---HhccCChhhccCHHHHHHHHH
Confidence 3454455555 499999999999999999876
No 237
>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a
Probab=36.38 E-value=22 Score=27.53 Aligned_cols=19 Identities=32% Similarity=0.537 Sum_probs=16.6
Q ss_pred hcccCCCCCCCCCHHHHHH
Q 035742 192 FPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 192 l~C~~~~p~~Rp~m~~V~~ 210 (214)
..|...+|.+||++.+|.+
T Consensus 234 ~~~l~~~P~~Rps~~~il~ 252 (256)
T cd06612 234 KKCLVKDPEERPSAIQLLQ 252 (256)
T ss_pred HHHHhcChhhCcCHHHHhc
Confidence 3499999999999999875
No 238
>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6. Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs
Probab=36.07 E-value=63 Score=25.40 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=20.0
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHH
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
..+..++.. |...+|.+||++.+|.+
T Consensus 235 ~~l~~li~~---~l~~~p~~Rp~~~~il~ 260 (283)
T cd06617 235 PEFQDFVNK---CLKKNYKERPNYPELLQ 260 (283)
T ss_pred HHHHHHHHH---HccCChhhCcCHHHHhc
Confidence 444444444 99999999999999875
No 239
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=36.06 E-value=38 Score=29.93 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHH
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
..+.+++.. |+..+|.+||++.++.+
T Consensus 271 ~~l~~li~~---~L~~dP~~RPs~~ell~ 296 (496)
T PTZ00283 271 PEMQEIVTA---LLSSDPKRRPSSSKLLN 296 (496)
T ss_pred HHHHHHHHH---HcccChhhCcCHHHHHh
Confidence 444444444 89999999999999875
No 240
>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase. Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines
Probab=35.79 E-value=28 Score=27.66 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=18.8
Q ss_pred hcccCCCCCCCCCHHHHHHHhc
Q 035742 192 FPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 192 l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
..|...+|..||++++|.+.|+
T Consensus 244 ~~~l~~~p~~R~t~~~~~~~l~ 265 (288)
T cd05583 244 QKLLEKDPKKRLGANGADEIKN 265 (288)
T ss_pred HHHhcCCHhhccCcchHHHHhc
Confidence 3489999999999999988765
No 241
>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the
Probab=35.25 E-value=27 Score=28.10 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=19.4
Q ss_pred HHHHhhcccCCCCCCCCCHHHHHH
Q 035742 187 IMGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 187 l~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
+...-..|+..+|.+||++.++++
T Consensus 289 ~~~~i~~~l~~~P~~Rps~~eil~ 312 (316)
T cd07842 289 GFDLLRKLLEYDPTKRITAEEALE 312 (316)
T ss_pred HHHHHHHHhcCCcccCcCHHHHhc
Confidence 445555699999999999999875
No 242
>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins. Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily
Probab=35.25 E-value=33 Score=27.65 Aligned_cols=20 Identities=25% Similarity=0.576 Sum_probs=17.4
Q ss_pred hcccCCCCCCCCCHHHHHHH
Q 035742 192 FPCLNESPVSRPTMQTVSQQ 211 (214)
Q Consensus 192 l~C~~~~p~~Rp~m~~V~~~ 211 (214)
..|...+|.+||+|.+|+..
T Consensus 248 ~~~l~~~p~~Rp~~~~il~~ 267 (307)
T cd06607 248 DSCLQKIPQDRPSSEELLKH 267 (307)
T ss_pred HHHhcCChhhCcCHHHHhcC
Confidence 35999999999999999863
No 243
>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They
Probab=34.87 E-value=45 Score=25.55 Aligned_cols=26 Identities=23% Similarity=0.510 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHH
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
..+.+++. .|...+|.+||++.++.+
T Consensus 229 ~~~~~~i~---~~l~~~p~~Rp~~~~ll~ 254 (258)
T cd08215 229 SELRNLVS---SLLQKDPEERPSIAQILQ 254 (258)
T ss_pred HHHHHHHH---HHcCCChhhCcCHHHHhc
Confidence 44444444 499999999999999875
No 244
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=34.64 E-value=29 Score=37.16 Aligned_cols=32 Identities=31% Similarity=0.297 Sum_probs=26.7
Q ss_pred eCcCCcCcCCChhhhhCCcccceeeccccccc
Q 035742 78 DLSLNGFLGTIPSQIGNLSKLSYISLQSNQLS 109 (214)
Q Consensus 78 ~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 109 (214)
||++|+|+-.-+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68899999555556888999999999999875
No 245
>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio
Probab=34.20 E-value=29 Score=27.35 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=17.8
Q ss_pred HHhhcccCCCCCCCCCHHHHHH
Q 035742 189 GVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 189 ~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
..-..|.+.+|.+||++.+++.
T Consensus 261 ~li~~~l~~~p~~Rp~~~eil~ 282 (286)
T cd07847 261 SFLKGCLQMDPTERLSCEELLE 282 (286)
T ss_pred HHHHHHhcCCccccCCHHHHhc
Confidence 3444599999999999999875
No 246
>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2. Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst
Probab=34.15 E-value=40 Score=27.63 Aligned_cols=26 Identities=15% Similarity=0.438 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHH
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
..+.+++.. |...+|.+||++.++.+
T Consensus 275 ~~l~~li~~---~L~~~P~~Rpt~~ell~ 300 (331)
T cd06649 275 PDFQEFVNK---CLIKNPAERADLKMLMN 300 (331)
T ss_pred HHHHHHHHH---HccCCcccCCCHHHHhc
Confidence 344455555 99999999999999875
No 247
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=32.71 E-value=14 Score=31.78 Aligned_cols=62 Identities=21% Similarity=0.112 Sum_probs=29.4
Q ss_pred CCCCCcEEeCcCCc-CcCCChhhhhC-Ccccceeeccccc-cccCC-Cccccccccchhhhccccc
Q 035742 70 SFPQLVHLDLSLNG-FLGTIPSQIGN-LSKLSYISLQSNQ-LSGKI-PLEVGLLTHLKVLHFQFNQ 131 (214)
Q Consensus 70 ~l~~L~~L~l~~n~-l~~~~p~~~~~-l~~L~~L~ls~N~-l~g~~-p~~~~~l~~L~~L~l~~N~ 131 (214)
.+..|+.|++++.. ++...-..+.. +++|+.|.+.++. ++..- -.....+++|++|+++.+.
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 44566666666655 44332233332 5666666654444 22111 1112334556666666543
No 248
>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely
Probab=32.67 E-value=34 Score=27.29 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCHHHHHH
Q 035742 181 QEKLISIMGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 181 ~~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
+..+.+++.. |...+|.+||++.+|+.
T Consensus 272 ~~~~~~li~~---~l~~~P~~Rp~~~~il~ 298 (302)
T cd07864 272 PTPALDLLDH---MLTLDPSKRCTAEEALN 298 (302)
T ss_pred CHHHHHHHHH---HccCChhhCCCHHHHhc
Confidence 3444555555 99999999999999875
No 249
>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase. Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea
Probab=32.61 E-value=34 Score=27.01 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=18.3
Q ss_pred HHHhhcccCCCCCCCCCHHHHHH
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
...-..|+..+|.+||++++++.
T Consensus 259 ~~li~~~l~~~p~~R~~~~~~l~ 281 (286)
T cd07832 259 LDLLKGLLVYDPSKRLSAAEALR 281 (286)
T ss_pred HHHHHHHhccChhhCCCHHHHhh
Confidence 33444599999999999999875
No 250
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=32.59 E-value=2.2 Score=37.62 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=17.1
Q ss_pred cccceeeccccccccCCC----ccccccccchhhhcccccce
Q 035742 96 SKLSYISLQSNQLSGKIP----LEVGLLTHLKVLHFQFNQLK 133 (214)
Q Consensus 96 ~~L~~L~ls~N~l~g~~p----~~~~~l~~L~~L~l~~N~l~ 133 (214)
..++.++++.|.|+..-. ..+..+..++.+.++.|.+.
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 344555555555543222 22333344555555555443
No 251
>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases. Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include
Probab=31.71 E-value=59 Score=25.68 Aligned_cols=19 Identities=37% Similarity=0.646 Sum_probs=16.5
Q ss_pred hcccCCCCCCCCCHHHHHH
Q 035742 192 FPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 192 l~C~~~~p~~Rp~m~~V~~ 210 (214)
..|+..+|..||++.++.+
T Consensus 243 ~~~l~~~p~~Rp~~~~l~~ 261 (286)
T cd06622 243 AKCLNKIPNRRPTYAQLLE 261 (286)
T ss_pred HHHcccCcccCCCHHHHhc
Confidence 3489999999999999875
No 252
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=31.54 E-value=28 Score=31.21 Aligned_cols=66 Identities=26% Similarity=0.222 Sum_probs=42.0
Q ss_pred CCCeEEEEecCCCCccccCc--cccCCCCCCcEEeCcCCcCcCCChhhhhC--CcccceeeccccccccCC
Q 035742 46 AGRVINISLRNTGLSGTLSD--FSFSSFPQLVHLDLSLNGFLGTIPSQIGN--LSKLSYISLQSNQLSGKI 112 (214)
Q Consensus 46 ~~~L~~L~L~~n~l~g~~p~--~~~~~l~~L~~L~l~~n~l~~~~p~~~~~--l~~L~~L~ls~N~l~g~~ 112 (214)
...+.+++|++|+|. .+.. .--...++|..|+|++|...-....++.. ...|++|.+.+|.+...+
T Consensus 217 ~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred Ccceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccch
Confidence 346889999999986 3320 12235689999999999322122223332 234889999999887443
No 253
>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase. Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down
Probab=31.00 E-value=33 Score=27.73 Aligned_cols=23 Identities=17% Similarity=0.507 Sum_probs=18.5
Q ss_pred HHhhcccCCCCCCCCCHHHHHHH
Q 035742 189 GVAFPCLNESPVSRPTMQTVSQQ 211 (214)
Q Consensus 189 ~~~l~C~~~~p~~Rp~m~~V~~~ 211 (214)
..-..|+..+|.+||++.+|...
T Consensus 265 ~li~~~l~~~P~~Rpt~~~ll~~ 287 (308)
T cd06615 265 DFVDKCLKKNPKERADLKELTKH 287 (308)
T ss_pred HHHHHHccCChhhCcCHHHHhcC
Confidence 33345999999999999998754
No 254
>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin. Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre
Probab=30.85 E-value=34 Score=27.25 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=18.5
Q ss_pred HHHhhcccCCCCCCCCCHHHHHH
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
..+...|...+|.+||++.++.+
T Consensus 264 ~~li~~~l~~~p~~Rps~~~il~ 286 (291)
T cd06639 264 NHFISQCLIKDFEARPSVTHLLE 286 (291)
T ss_pred HHHHHHHhhcChhhCcCHHHHhc
Confidence 34444599999999999999875
No 255
>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5. Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p
Probab=30.75 E-value=32 Score=27.22 Aligned_cols=20 Identities=20% Similarity=0.582 Sum_probs=16.9
Q ss_pred hcccCCCCCCCCCHHHHHHH
Q 035742 192 FPCLNESPVSRPTMQTVSQQ 211 (214)
Q Consensus 192 l~C~~~~p~~Rp~m~~V~~~ 211 (214)
..|.+.+|.+||++.++.+.
T Consensus 234 ~~~l~~~P~~Rp~~~eil~~ 253 (279)
T cd06619 234 TQCMRKQPKERPAPENLMDH 253 (279)
T ss_pred HHHhhCChhhCCCHHHHhcC
Confidence 34999999999999998753
No 256
>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast
Probab=30.58 E-value=42 Score=25.75 Aligned_cols=20 Identities=25% Similarity=0.604 Sum_probs=16.7
Q ss_pred hhcccCCCCCCCCCHHHHHH
Q 035742 191 AFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 191 ~l~C~~~~p~~Rp~m~~V~~ 210 (214)
-..|+..+|.+||++.+++.
T Consensus 231 i~~~l~~~p~~R~~~~~~l~ 250 (254)
T cd06627 231 LMQCFQKDPNLRPTAKQLLK 250 (254)
T ss_pred HHHHHhCChhhCcCHHHHhc
Confidence 34588999999999999874
No 257
>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4. Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates
Probab=30.45 E-value=35 Score=27.08 Aligned_cols=26 Identities=15% Similarity=0.452 Sum_probs=20.1
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHH
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
..+.+++. .|...+|.+||++.+|..
T Consensus 241 ~~l~~li~---~~l~~~p~~Rpt~~~i~~ 266 (288)
T cd06616 241 PSFVNFIN---LCLIKDESKRPKYKELLE 266 (288)
T ss_pred HHHHHHHH---HHccCChhhCcCHHHHhc
Confidence 44444444 499999999999999875
No 258
>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein. Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc
Probab=30.35 E-value=39 Score=27.22 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=18.0
Q ss_pred HHhhcccCCCCCCCCCHHHHHH
Q 035742 189 GVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 189 ~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
..-..|.+.+|.+||++.++.+
T Consensus 273 ~li~~~l~~~P~~Rpt~~~ll~ 294 (314)
T cd08216 273 QFVELCLQRDPESRPSASQLLN 294 (314)
T ss_pred HHHHHHhhcCCCcCcCHHHHhc
Confidence 3444599999999999999875
No 259
>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1. Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst
Probab=29.56 E-value=57 Score=26.81 Aligned_cols=25 Identities=16% Similarity=0.454 Sum_probs=19.3
Q ss_pred HHHHHHHHhhcccCCCCCCCCCHHHHHH
Q 035742 183 KLISIMGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 183 ~L~~l~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
.+.+++.- |+..+|.+||++.++..
T Consensus 274 ~~~~li~~---~L~~~P~~Rpt~~ell~ 298 (333)
T cd06650 274 EFQDFVNK---CLIKNPAERADLKQLMV 298 (333)
T ss_pred HHHHHHHH---hccCCcccCcCHHHHhh
Confidence 34444444 99999999999999864
No 260
>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1. Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the
Probab=29.41 E-value=49 Score=26.30 Aligned_cols=25 Identities=12% Similarity=0.197 Sum_probs=19.0
Q ss_pred HHHHHHHHhhcccCCCCCCCCCHHHHHH
Q 035742 183 KLISIMGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 183 ~L~~l~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
.+.+++.. |...+|.+||++.++++
T Consensus 265 ~~~~li~~---~l~~~p~~R~t~~ell~ 289 (293)
T cd07843 265 NGFDLLNR---LLTYDPAKRISAEDALK 289 (293)
T ss_pred HHHHHHHH---HhccCccccCCHHHHhc
Confidence 33444444 89999999999999874
No 261
>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the
Probab=29.22 E-value=45 Score=26.15 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=18.3
Q ss_pred HHHhhcccCCCCCCCCCHHHHHH
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
...-..|+..+|.+||++.+|+.
T Consensus 256 ~~~i~~~l~~~P~~Rp~~~~~l~ 278 (282)
T cd07829 256 IDLLSKMLQYNPAKRISAKEALK 278 (282)
T ss_pred HHHHHHhhccCcccCCCHHHHhh
Confidence 33444499999999999999875
No 262
>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also
Probab=29.10 E-value=47 Score=26.19 Aligned_cols=19 Identities=26% Similarity=0.197 Sum_probs=16.4
Q ss_pred hcccCCCCCCCCCHHHHHH
Q 035742 192 FPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 192 l~C~~~~p~~Rp~m~~V~~ 210 (214)
..|+..+|.+||++.++.+
T Consensus 262 ~~~l~~~P~~R~t~~~il~ 280 (284)
T cd07839 262 QNLLVCNPVQRISAEEALQ 280 (284)
T ss_pred HHHhcCChhhcCCHHHHhc
Confidence 3499999999999999864
No 263
>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4
Probab=29.04 E-value=44 Score=25.92 Aligned_cols=19 Identities=37% Similarity=0.602 Sum_probs=16.4
Q ss_pred hcccCCCCCCCCCHHHHHH
Q 035742 192 FPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 192 l~C~~~~p~~Rp~m~~V~~ 210 (214)
..|...+|.+||++.++..
T Consensus 242 ~~~l~~~p~~R~~~~~i~~ 260 (264)
T cd06626 242 DRCLESDPKKRPTASELLQ 260 (264)
T ss_pred HHHccCCcccCCCHHHHhc
Confidence 3599999999999999864
No 264
>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes
Probab=28.59 E-value=50 Score=26.15 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=18.9
Q ss_pred HHHHHHHhhcccCCCCCCCCCHHHHHH
Q 035742 184 LISIMGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 184 L~~l~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
+.+++.. |+..+|.+||++.++.+
T Consensus 260 ~~dll~~---~L~~~P~~R~s~~~~l~ 283 (287)
T cd07848 260 LLDLMKN---LLKLNPTDRYLTEQCLN 283 (287)
T ss_pred HHHHHHH---HccCCcccCCCHHHHhc
Confidence 4445544 99999999999998864
No 265
>PLN00009 cyclin-dependent kinase A; Provisional
Probab=28.48 E-value=42 Score=26.75 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=17.4
Q ss_pred HhhcccCCCCCCCCCHHHHHH
Q 035742 190 VAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 190 ~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
.-..|...+|.+||++.++++
T Consensus 263 ~i~~~l~~~P~~Rps~~~~l~ 283 (294)
T PLN00009 263 LLSKMLRLDPSKRITARAALE 283 (294)
T ss_pred HHHHHccCChhhCcCHHHHhc
Confidence 333499999999999999875
No 266
>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7. Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it
Probab=28.38 E-value=37 Score=27.16 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHHH
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQ 211 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~ 211 (214)
..+.+++. .|...+|.+||++.+++..
T Consensus 247 ~~l~~li~---~~l~~~p~~Rp~~~~il~~ 273 (296)
T cd06618 247 PDFCSFVD---LCLTKDHRKRPKYRELLQH 273 (296)
T ss_pred HHHHHHHH---HHccCChhhCCCHHHHhcC
Confidence 44444444 5999999999999998754
No 267
>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent
Probab=27.90 E-value=51 Score=25.88 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=20.2
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHHH
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQ 211 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~ 211 (214)
..+.+++. .|...+|.+||++.++...
T Consensus 229 ~~~~~~i~---~~l~~~p~~R~~~~~il~~ 255 (277)
T cd06917 229 KLLREFVA---ACLDEEPKERLSAEELLKS 255 (277)
T ss_pred HHHHHHHH---HHcCCCcccCcCHHHHhhC
Confidence 34444444 4999999999999998753
No 268
>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl
Probab=27.76 E-value=42 Score=26.80 Aligned_cols=22 Identities=18% Similarity=0.083 Sum_probs=18.1
Q ss_pred HHhhcccCCCCCCCCCHHHHHH
Q 035742 189 GVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 189 ~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
+.-..|+..+|.+||++.++.+
T Consensus 285 dli~~~l~~~P~~R~t~~e~l~ 306 (310)
T cd07865 285 DLIDKLLVLDPAKRIDADTALN 306 (310)
T ss_pred HHHHHHhcCChhhccCHHHHhc
Confidence 4445599999999999999874
No 269
>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=27.66 E-value=86 Score=27.46 Aligned_cols=61 Identities=23% Similarity=0.423 Sum_probs=35.2
Q ss_pred hhhhcCCCCchhhhhhcccccchhhhhhhhcCCCCCCCcchhHHHHHHHHHHhhcccCCCCCCCCCHHHHHH
Q 035742 139 LEVIKGKHPRDFLCSILSSSLTKDVALDEMLDPRLPTSSCSVQEKLISIMGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 139 ~~~l~g~~p~~~~~~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
++..+|..|..-..- ......+.....+.+... ++ ..|.+++.. |+..+|..||+..+...
T Consensus 202 iEla~GePP~s~~hP-----mrvlflIpk~~PP~L~~~-~S--~~~kEFV~~---CL~k~P~~RpsA~~LLK 262 (467)
T KOG0201|consen 202 IELAKGEPPHSKLHP-----MRVLFLIPKSAPPRLDGD-FS--PPFKEFVEA---CLDKNPEFRPSAKELLK 262 (467)
T ss_pred HHHhcCCCCCcccCc-----ceEEEeccCCCCCccccc-cC--HHHHHHHHH---HhhcCcccCcCHHHHhh
Confidence 577788888743221 111112222333333332 22 345566666 99999999999998764
No 270
>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul
Probab=27.56 E-value=48 Score=27.14 Aligned_cols=23 Identities=17% Similarity=0.093 Sum_probs=18.5
Q ss_pred HHhhcccCCCCCCCCCHHHHHHH
Q 035742 189 GVAFPCLNESPVSRPTMQTVSQQ 211 (214)
Q Consensus 189 ~~~l~C~~~~p~~Rp~m~~V~~~ 211 (214)
..-..|...+|.+||++.++++.
T Consensus 273 ~li~~~l~~~P~~Rps~~~il~~ 295 (337)
T cd07852 273 DLLKKLLVFNPNKRLTAEEALEH 295 (337)
T ss_pred HHHHHhccCCcccccCHHHHhhC
Confidence 34445999999999999999863
No 271
>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta. Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig
Probab=27.45 E-value=52 Score=26.84 Aligned_cols=24 Identities=21% Similarity=0.487 Sum_probs=19.3
Q ss_pred HHHHhhcccCCCCCCCCCHHHHHH
Q 035742 187 IMGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 187 l~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
+..+-..|++.+|.+||++.++.+
T Consensus 284 ~~~li~~~l~~dP~~Rpta~e~l~ 307 (328)
T cd08226 284 FQNLVELCLQQDPEKRPSASSLLS 307 (328)
T ss_pred HHHHHHHHccCCcccCCCHHHHhh
Confidence 344555599999999999999874
No 272
>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants. Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati
Probab=27.11 E-value=41 Score=27.66 Aligned_cols=22 Identities=18% Similarity=0.093 Sum_probs=18.0
Q ss_pred HHhhcccCCCCCCCCCHHHHHH
Q 035742 189 GVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 189 ~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
.+-..|++.+|.+||+++++++
T Consensus 269 ~li~~~l~~~P~~Rps~~ell~ 290 (337)
T cd07858 269 DLLEKMLVFDPSKRITVEEALA 290 (337)
T ss_pred HHHHHHhcCChhhccCHHHHHc
Confidence 4444599999999999999875
No 273
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=26.65 E-value=8.5 Score=15.85 Aligned_cols=6 Identities=50% Similarity=1.575 Sum_probs=3.2
Q ss_pred cceeee
Q 035742 38 WFGISC 43 (214)
Q Consensus 38 w~gv~c 43 (214)
|.|..|
T Consensus 8 ~~G~~C 13 (13)
T PF12661_consen 8 WTGPNC 13 (13)
T ss_dssp EETTTT
T ss_pred CcCCCC
Confidence 666443
No 274
>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla
Probab=26.52 E-value=45 Score=26.47 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=18.0
Q ss_pred HHhhcccCCCCCCCCCHHHHHH
Q 035742 189 GVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 189 ~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
.+-..|+..+|.+||++.++.+
T Consensus 265 ~li~~~l~~~P~~R~s~~~~l~ 286 (290)
T cd07862 265 DLLLKCLTFNPAKRISAYSALS 286 (290)
T ss_pred HHHHHHhccCchhcCCHHHHhc
Confidence 3444599999999999999874
No 275
>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase. Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm
Probab=26.42 E-value=48 Score=26.32 Aligned_cols=19 Identities=16% Similarity=0.156 Sum_probs=16.3
Q ss_pred hcccCCCCCCCCCHHHHHH
Q 035742 192 FPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 192 l~C~~~~p~~Rp~m~~V~~ 210 (214)
..|+..+|.+||++.+++.
T Consensus 272 ~~~l~~~P~~R~~~~eil~ 290 (295)
T cd07837 272 QKMLRYDPAKRISAKAALT 290 (295)
T ss_pred HHHccCChhhcCCHHHHhc
Confidence 3489999999999999874
No 276
>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea
Probab=26.33 E-value=47 Score=26.19 Aligned_cols=26 Identities=27% Similarity=0.548 Sum_probs=20.0
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHH
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
..+.+++.. |...+|.+||+..++++
T Consensus 253 ~~~~~li~~---cl~~~p~~Rp~~~ell~ 278 (282)
T cd06636 253 KKFIDFIEG---CLVKNYLSRPSTEQLLK 278 (282)
T ss_pred HHHHHHHHH---HhCCChhhCcCHHHHhc
Confidence 444555554 99999999999998864
No 277
>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase. Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.
Probab=26.27 E-value=58 Score=25.70 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=20.2
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHH
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
..+.+++.. |...+|.+||++.++++
T Consensus 236 ~~~~~li~~---~l~~~p~~Rp~~~~il~ 261 (282)
T cd06643 236 SEFKDFLKK---CLEKNVDARWTTTQLLQ 261 (282)
T ss_pred HHHHHHHHH---HccCChhhCcCHHHHhc
Confidence 445555554 99999999999999875
No 278
>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase
Probab=26.07 E-value=44 Score=27.40 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=18.4
Q ss_pred HHhhcccCCCCCCCCCHHHHHHH
Q 035742 189 GVAFPCLNESPVSRPTMQTVSQQ 211 (214)
Q Consensus 189 ~~~l~C~~~~p~~Rp~m~~V~~~ 211 (214)
..-..|+..+|.+||++.++++.
T Consensus 270 ~li~~~l~~dP~~Rpt~~e~l~h 292 (336)
T cd07849 270 DLLDKMLTFNPHKRITVEEALAH 292 (336)
T ss_pred HHHHHHcCCChhhCcCHHHHhcC
Confidence 34445999999999999998753
No 279
>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5. Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the
Probab=25.76 E-value=55 Score=26.82 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHH
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
..+.+++.. |++.+|.+||++.+++.
T Consensus 268 ~~~~~li~~---~l~~~P~~Rpt~~~~l~ 293 (334)
T cd07855 268 PEALDLLSQ---MLQFDPEERITVEQALQ 293 (334)
T ss_pred HHHHHHHHH---HccCChhhCcCHHHHHh
Confidence 334444444 99999999999999876
No 280
>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=25.68 E-value=57 Score=26.18 Aligned_cols=19 Identities=21% Similarity=0.288 Sum_probs=16.8
Q ss_pred hcccCCCCCCCCCHHHHHH
Q 035742 192 FPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 192 l~C~~~~p~~Rp~m~~V~~ 210 (214)
..|...+|.+||++.++++
T Consensus 251 ~~~l~~~p~~Rpt~~eil~ 269 (296)
T cd06654 251 NRCLDMDVEKRGSAKELLQ 269 (296)
T ss_pred HHHCcCCcccCcCHHHHhh
Confidence 3499999999999999886
No 281
>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the
Probab=25.62 E-value=51 Score=26.16 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=18.2
Q ss_pred HHHhhcccCCCCCCCCCHHHHHH
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
......|+..+|.+||++.++..
T Consensus 265 ~~li~~~L~~~p~~Rps~~e~l~ 287 (291)
T cd07844 265 EELALKFLQYEPKKRISAAEAMK 287 (291)
T ss_pred HHHHHHHhccCcccccCHHHHhc
Confidence 34445589999999999999864
No 282
>PHA03209 serine/threonine kinase US3; Provisional
Probab=25.60 E-value=34 Score=28.54 Aligned_cols=18 Identities=17% Similarity=0.279 Sum_probs=16.2
Q ss_pred cccCCCCCCCCCHHHHHH
Q 035742 193 PCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 193 ~C~~~~p~~Rp~m~~V~~ 210 (214)
.|+..+|.+||++.+|++
T Consensus 333 ~mL~~dP~~Rpta~e~l~ 350 (357)
T PHA03209 333 KMLTFDAAMRPSAEEILN 350 (357)
T ss_pred HHHcCCcccCcCHHHHhc
Confidence 589999999999999874
No 283
>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]
Probab=25.59 E-value=1e+02 Score=28.98 Aligned_cols=38 Identities=18% Similarity=0.412 Sum_probs=28.3
Q ss_pred CCCCCcchhHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 172 RLPTSSCSVQEKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 172 ~lp~~~~~~~~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
.+|+.- ...+.|..++.. |++.+|.+||.+-+|..++.
T Consensus 272 ~~P~~p-~ys~~l~~LI~~---mL~~nP~~RPnI~Qv~~~~~ 309 (738)
T KOG1989|consen 272 SFPPFP-NYSDRLKDLIRT---MLQPNPDERPNIYQVLEEIF 309 (738)
T ss_pred cCCCCc-cHHHHHHHHHHH---HhccCcccCCCHHHHHHHHH
Confidence 466652 233566666666 99999999999999998753
No 284
>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2. Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin
Probab=25.48 E-value=75 Score=25.64 Aligned_cols=19 Identities=32% Similarity=0.704 Sum_probs=16.6
Q ss_pred cccCCCCCCCCCHHHHHHH
Q 035742 193 PCLNESPVSRPTMQTVSQQ 211 (214)
Q Consensus 193 ~C~~~~p~~Rp~m~~V~~~ 211 (214)
.|...+|.+||++.+|...
T Consensus 249 ~cl~~~P~~Rp~~~~ll~~ 267 (308)
T cd06634 249 SCLQKIPQDRPTSEVLLKH 267 (308)
T ss_pred HHhhCCcccCCCHHHHhhC
Confidence 4999999999999998753
No 285
>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated
Probab=25.25 E-value=67 Score=25.04 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=18.8
Q ss_pred HHHHHHHHhhcccCCCCCCCCCHHHHHH
Q 035742 183 KLISIMGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 183 ~L~~l~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
.+.+++.. |+..+|.+||++.+|.+
T Consensus 240 ~~~~li~~---~l~~~P~~R~~~~~ll~ 264 (267)
T cd06645 240 SFHHFVKM---ALTKNPKKRPTAEKLLQ 264 (267)
T ss_pred HHHHHHHH---HccCCchhCcCHHHHhc
Confidence 33444444 88999999999999875
No 286
>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou
Probab=25.04 E-value=56 Score=25.87 Aligned_cols=27 Identities=22% Similarity=0.528 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHHH
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQ 211 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~ 211 (214)
..+.+++.. |...+|..||++.+|.+.
T Consensus 244 ~~l~~li~~---~l~~~p~~Rpt~~~il~~ 270 (286)
T cd06614 244 PEFKDFLNK---CLVKDPEKRPSAEELLQH 270 (286)
T ss_pred HHHHHHHHH---HhccChhhCcCHHHHhhC
Confidence 344444444 999999999999999753
No 287
>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants. Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos
Probab=24.93 E-value=54 Score=26.68 Aligned_cols=20 Identities=25% Similarity=0.213 Sum_probs=16.9
Q ss_pred hhcccCCCCCCCCCHHHHHH
Q 035742 191 AFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 191 ~l~C~~~~p~~Rp~m~~V~~ 210 (214)
-..|+..+|.+||++.++.+
T Consensus 270 i~~~l~~~P~~Rpt~~e~l~ 289 (338)
T cd07859 270 LERLLAFDPKDRPTAEEALA 289 (338)
T ss_pred HHHHcCcCcccCCCHHHHhc
Confidence 33489999999999999875
No 288
>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express
Probab=24.89 E-value=66 Score=25.78 Aligned_cols=18 Identities=33% Similarity=0.396 Sum_probs=16.0
Q ss_pred ccCCCCCCCCCHHHHHHH
Q 035742 194 CLNESPVSRPTMQTVSQQ 211 (214)
Q Consensus 194 C~~~~p~~Rp~m~~V~~~ 211 (214)
|...+|.+||++.++++.
T Consensus 255 ~l~~~P~~Rpt~~~il~~ 272 (292)
T cd06658 255 MLVREPSQRATAQELLQH 272 (292)
T ss_pred HccCChhHCcCHHHHhhC
Confidence 788999999999999863
No 289
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=24.57 E-value=92 Score=28.55 Aligned_cols=30 Identities=13% Similarity=0.327 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742 181 QEKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ 213 (214)
Q Consensus 181 ~~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~ 213 (214)
+..+.+++.. |...++.+||...++.++|.
T Consensus 622 pk~mk~Ll~~---C~~~~~~eRP~F~~il~~l~ 651 (678)
T KOG0193|consen 622 PKAMKRLLSD---CWKFDREERPLFPQLLSKLE 651 (678)
T ss_pred HHHHHHHHHH---HHhcCcccCccHHHHHHHHH
Confidence 4566666666 99999999999999998653
No 290
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=24.46 E-value=58 Score=15.70 Aligned_cols=11 Identities=55% Similarity=0.588 Sum_probs=5.8
Q ss_pred CCCcEEeCcCC
Q 035742 72 PQLVHLDLSLN 82 (214)
Q Consensus 72 ~~L~~L~l~~n 82 (214)
++|+.|+++++
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34555555554
No 291
>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl
Probab=23.89 E-value=58 Score=26.10 Aligned_cols=19 Identities=11% Similarity=-0.045 Sum_probs=16.5
Q ss_pred hcccCCCCCCCCCHHHHHH
Q 035742 192 FPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 192 l~C~~~~p~~Rp~m~~V~~ 210 (214)
..|++.+|.+||++.+|.+
T Consensus 267 ~~ml~~dp~~R~t~~eil~ 285 (301)
T cd07873 267 SKLLQFEGRKRISAEEAMK 285 (301)
T ss_pred HHHhcCCcccCcCHHHHhc
Confidence 3489999999999999875
No 292
>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and
Probab=23.70 E-value=67 Score=26.07 Aligned_cols=19 Identities=21% Similarity=0.118 Sum_probs=16.5
Q ss_pred cccCCCCCCCCCHHHHHHH
Q 035742 193 PCLNESPVSRPTMQTVSQQ 211 (214)
Q Consensus 193 ~C~~~~p~~Rp~m~~V~~~ 211 (214)
.|++.+|.+||++.++...
T Consensus 271 ~~l~~~P~~Rpt~~~ll~~ 289 (330)
T cd07834 271 KMLVFDPKKRITADEALAH 289 (330)
T ss_pred HHccCChhhCCCHHHHHhC
Confidence 4899999999999998763
No 293
>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins. Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic
Probab=23.65 E-value=59 Score=25.95 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=18.1
Q ss_pred HHHhhcccCCCCCCCCCHHHHHH
Q 035742 188 MGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 188 ~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
.+.-..|+..+|.+||++.+++.
T Consensus 285 ~~~i~~~l~~~p~~R~t~~ell~ 307 (311)
T cd07866 285 LDLLSKLLSLDPYKRLTASDALE 307 (311)
T ss_pred HHHHHHHcccCcccCcCHHHHhc
Confidence 34444599999999999999874
No 294
>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok
Probab=23.56 E-value=56 Score=27.02 Aligned_cols=22 Identities=18% Similarity=0.161 Sum_probs=18.0
Q ss_pred HHhhcccCCCCCCCCCHHHHHH
Q 035742 189 GVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 189 ~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
.+-..|+..+|.+||++.++.+
T Consensus 289 ~li~~mL~~dP~~Rps~~ell~ 310 (355)
T cd07874 289 DLLSKMLVIDPAKRISVDEALQ 310 (355)
T ss_pred HHHHHHhcCCchhcCCHHHHhc
Confidence 3444589999999999999875
No 295
>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK
Probab=23.54 E-value=55 Score=26.97 Aligned_cols=22 Identities=18% Similarity=0.018 Sum_probs=17.5
Q ss_pred HHhhcccCCCCCCCCCHHHHHH
Q 035742 189 GVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 189 ~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
..-..|+..+|.+||++.+|..
T Consensus 276 dli~~~l~~~P~~Rpt~~ell~ 297 (343)
T cd07851 276 DLLEKMLVLDPDKRITAAEALA 297 (343)
T ss_pred HHHHHhCCCChhhCCCHHHHhc
Confidence 3334499999999999999864
No 296
>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=23.44 E-value=57 Score=26.18 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=16.8
Q ss_pred hcccCCCCCCCCCHHHHHH
Q 035742 192 FPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 192 l~C~~~~p~~Rp~m~~V~~ 210 (214)
..|+..+|.+||++.+|++
T Consensus 250 ~~~l~~~p~~Rps~~~il~ 268 (297)
T cd06656 250 NRCLEMDVDRRGSAKELLQ 268 (297)
T ss_pred HHHccCChhhCcCHHHHhc
Confidence 3599999999999999976
No 297
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=23.07 E-value=71 Score=26.38 Aligned_cols=42 Identities=26% Similarity=0.485 Sum_probs=30.5
Q ss_pred hhcCCCCCCCcchhHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742 167 EMLDPRLPTSSCSVQEKLISIMGVAFPCLNESPVSRPTMQTVSQQLQI 214 (214)
Q Consensus 167 ~~l~~~lp~~~~~~~~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~~ 214 (214)
+.+...||+.+.... .++... |-.++|-+||....||-.|+|
T Consensus 404 eglrv~ippgis~hm---~klm~i---cmnedpgkrpkfdmivpilek 445 (448)
T KOG0195|consen 404 EGLRVHIPPGISRHM---NKLMNI---CMNEDPGKRPKFDMIVPILEK 445 (448)
T ss_pred ccccccCCCCccHHH---HHHHHH---HhcCCCCcCCCcceehhhHHH
Confidence 456667888776433 344444 899999999998888877664
No 298
>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti
Probab=23.04 E-value=55 Score=25.78 Aligned_cols=18 Identities=33% Similarity=0.660 Sum_probs=16.0
Q ss_pred cccCCCCCCCCCHHHHHH
Q 035742 193 PCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 193 ~C~~~~p~~Rp~m~~V~~ 210 (214)
.|...+|.+||++.+|++
T Consensus 244 ~~l~~~p~~Rps~~~il~ 261 (280)
T cd06611 244 SCLVKDPDDRPTAAELLK 261 (280)
T ss_pred HHhccChhhCcCHHHHhc
Confidence 489999999999999864
No 299
>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their
Probab=23.03 E-value=86 Score=24.32 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=17.8
Q ss_pred HHhhcccCCCCCCCCCHHHHHH
Q 035742 189 GVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 189 ~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
..-..|+..+|.+||++.++.+
T Consensus 242 ~~i~~~l~~~p~~R~~~~~ll~ 263 (268)
T cd06630 242 DVTLRCLELQPEDRPPSRELLK 263 (268)
T ss_pred HHHHHHcCCCcccCcCHHHHhc
Confidence 3444599999999999999874
No 300
>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase. Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess
Probab=22.73 E-value=63 Score=25.66 Aligned_cols=21 Identities=24% Similarity=0.093 Sum_probs=17.1
Q ss_pred HhhcccCCCCCCCCCHHHHHH
Q 035742 190 VAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 190 ~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
....|+..+|.+||++.++..
T Consensus 267 ll~~~l~~dp~~R~t~~~~l~ 287 (291)
T cd07870 267 LASQMLMMFPKDRISAQDALL 287 (291)
T ss_pred HHHHHhCcCcccCcCHHHHhc
Confidence 334589999999999999864
No 301
>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase. Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.
Probab=22.64 E-value=66 Score=25.57 Aligned_cols=19 Identities=21% Similarity=0.457 Sum_probs=16.4
Q ss_pred hcccCCCCCCCCCHHHHHH
Q 035742 192 FPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 192 l~C~~~~p~~Rp~m~~V~~ 210 (214)
..|+..+|.+||++.+|++
T Consensus 250 ~~~l~~~p~~Rp~~~~il~ 268 (292)
T cd06644 250 KTALDKHPETRPSAAQLLE 268 (292)
T ss_pred HHHhcCCcccCcCHHHHhc
Confidence 3489999999999999875
No 302
>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou
Probab=22.12 E-value=64 Score=25.48 Aligned_cols=21 Identities=19% Similarity=0.148 Sum_probs=17.0
Q ss_pred HhhcccCCCCCCCCCHHHHHH
Q 035742 190 VAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 190 ~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
+-..|++.+|.+||++.++..
T Consensus 264 li~~~L~~dP~~R~t~~~~l~ 284 (288)
T cd07863 264 LLLEMLTFNPHKRISAFRALQ 284 (288)
T ss_pred HHHHHhccCcccCCCHHHHhc
Confidence 333489999999999998864
No 303
>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK
Probab=21.63 E-value=81 Score=26.05 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=17.9
Q ss_pred HHhhcccCCCCCCCCCHHHHHH
Q 035742 189 GVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 189 ~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
..-..|++.+|.+||++.++++
T Consensus 289 ~li~~~L~~dP~~R~t~~eiL~ 310 (353)
T cd07850 289 DLLSKMLVIDPEKRISVDDALQ 310 (353)
T ss_pred HHHHHHcCCChhhCcCHHHHhc
Confidence 3344599999999999999874
No 304
>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85. Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.
Probab=21.37 E-value=80 Score=24.81 Aligned_cols=18 Identities=22% Similarity=0.165 Sum_probs=15.8
Q ss_pred cccCCCCCCCCCHHHHHH
Q 035742 193 PCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 193 ~C~~~~p~~Rp~m~~V~~ 210 (214)
.|.+.+|.+||++.+|++
T Consensus 263 ~~l~~~p~~R~~~~~~l~ 280 (284)
T cd07836 263 RLLQLNPELRISAHDALQ 280 (284)
T ss_pred HHhcCCcccCCCHHHHhc
Confidence 489999999999999874
No 305
>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]
Probab=21.21 E-value=1.3e+02 Score=27.79 Aligned_cols=65 Identities=20% Similarity=0.355 Sum_probs=41.5
Q ss_pred hhhhcCCCCchhhhhhcccccchhhhh-hhhcCCCCCCCcchhHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742 139 LEVIKGKHPRDFLCSILSSSLTKDVAL-DEMLDPRLPTSSCSVQEKLISIMGVAFPCLNESPVSRPTMQTVSQQLQI 214 (214)
Q Consensus 139 ~~~l~g~~p~~~~~~~~~~~~~~~~~~-~~~l~~~lp~~~~~~~~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~~ 214 (214)
+++|+|.+|.--.... .-...+ .|.|...+|.... +-|.-+++. |....|.-||+.+++..-|+|
T Consensus 302 WEmLT~EiPYkdVdss-----AIIwGVGsNsL~LpvPstcP---~GfklL~Kq---cw~sKpRNRPSFrqil~HldI 367 (904)
T KOG4721|consen 302 WEMLTGEIPYKDVDSS-----AIIWGVGSNSLHLPVPSTCP---DGFKLLLKQ---CWNSKPRNRPSFRQILLHLDI 367 (904)
T ss_pred HHHHhcCCCccccchh-----eeEEeccCCcccccCcccCc---hHHHHHHHH---HHhcCCCCCccHHHHHHHHhh
Confidence 6899999997422110 011111 3556666777664 444444555 999999999999999877654
No 306
>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i
Probab=21.14 E-value=1e+02 Score=24.77 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=16.3
Q ss_pred cccCCCCCCCCCHHHHHH
Q 035742 193 PCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 193 ~C~~~~p~~Rp~m~~V~~ 210 (214)
.|+..+|.+||++.+|++
T Consensus 253 ~~l~~~P~~Rps~~~ll~ 270 (297)
T cd06659 253 RMLTREPQERATAQELLD 270 (297)
T ss_pred HHhcCCcccCcCHHHHhh
Confidence 488999999999999986
No 307
>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1. Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co
Probab=21.09 E-value=77 Score=25.89 Aligned_cols=22 Identities=14% Similarity=0.141 Sum_probs=17.5
Q ss_pred HHhhcccCCCCCCCCCHHHHHH
Q 035742 189 GVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 189 ~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
.+...|+..+|.+||++.++..
T Consensus 270 ~li~~~l~~~P~~R~t~~~ll~ 291 (332)
T cd07857 270 DLLEKLLAFDPTKRISVEEALE 291 (332)
T ss_pred HHHHHHccCCcccCCCHHHHhc
Confidence 4444599999999999998764
No 308
>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun
Probab=20.42 E-value=66 Score=25.60 Aligned_cols=26 Identities=23% Similarity=0.315 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCHHHHHH
Q 035742 182 EKLISIMGVAFPCLNESPVSRPTMQTVSQ 210 (214)
Q Consensus 182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~ 210 (214)
..+.+++.. |+..+|.+||++.++++
T Consensus 243 ~~l~~li~~---~l~~~p~~Rpt~~~il~ 268 (285)
T cd06648 243 PRLRSFLDR---MLVRDPAQRATAAELLN 268 (285)
T ss_pred HHHHHHHHH---HcccChhhCcCHHHHcc
Confidence 344444444 89999999999999875
Done!