BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035743
         (216 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
          Length = 55

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/44 (56%), Positives = 30/44 (68%)

Query: 127 ECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCR 170
           EC +CL+E   GE  R LP+C HGFH  C+D WL  HS+CP CR
Sbjct: 7   ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50


>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
           38
          Length = 75

 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 34/43 (79%), Gaps = 1/43 (2%)

Query: 128 CVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCR 170
           CV+C+ +F S +L+R+LP CNH FH +C+DKWL+ + +CP CR
Sbjct: 26  CVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICR 67


>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
           Finger) Domain Of Ring Finger Protein 126
          Length = 78

 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 123 GLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLI 174
           G   EC +C  ++A GE VR LP CNH FH  CI  WL  H SCP CR  L 
Sbjct: 13  GSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLT 63


>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
          Length = 69

 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 127 ECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCR 170
           +C ICLS    GE VR LP C H FH  C+D+WL  +  CP CR
Sbjct: 16  KCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICR 58


>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
           Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
           Northeast Structural Genomics Consortium (Nesg) Target
           Hr4710b
          Length = 91

 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 104 NNAIKTFPVVKYSAELKIPGLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLH 163
             +I   P +  + +    G +  C IC SE+  G++   LP C+H FH  C+  WL+  
Sbjct: 19  KESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKS 77

Query: 164 SSCPKCR 170
            +CP CR
Sbjct: 78  GTCPVCR 84


>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
           Protein 24
          Length = 74

 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 116 SAELKIPGLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKC 169
           S ++K   L   C +CL +F   + + + P C H FH +C+ KWL +   CP C
Sbjct: 6   SGKVKELNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLC 58


>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
           Finger Protein 141
          Length = 70

 Score = 38.5 bits (88), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 116 SAELKIPGLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCR 170
           S  +K    + EC IC+     G    +LP C H F  +CIDKW   H +CP CR
Sbjct: 6   SGRVKQLTDEEECCICMD----GRADLILP-CAHSFCQKCIDKWSDRHRNCPICR 55


>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
 pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
          Length = 108

 Score = 35.8 bits (81), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 35/92 (38%), Gaps = 21/92 (22%)

Query: 93  STPSVKSSGIKNNAIKTFPVVKYSAELKIPGLD---AECVICLSEF-------------- 135
            TPS  +SG      K F V K++A + +   D     C IC +                
Sbjct: 8   DTPSGTNSGAGK---KRFEVKKWNA-VALWAWDIVVDNCAICRNHIMDLCIECQANQASA 63

Query: 136 ASGELVRLLPKCNHGFHVRCIDKWLRLHSSCP 167
            S E       CNH FH  CI +WL+    CP
Sbjct: 64  TSEECTVAWGVCNHAFHFHCISRWLKTRQVCP 95


>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
           Ligases: Conformational Control Of Conjugation.
 pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
           Protein Transfer: Structural Insights Into Cullin-Ring
           Ligases
 pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
           Protein Transfer: Structural Insights Into Cullin-Ring
           Ligases
 pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
           Protein Transfer: Structural Insights Into Cullin-Ring
           Ligases
 pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
           Protein Transfer: Structural Insights Into Cullin-Ring
           Ligases
 pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
 pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
          Length = 106

 Score = 35.8 bits (81), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 35/92 (38%), Gaps = 21/92 (22%)

Query: 93  STPSVKSSGIKNNAIKTFPVVKYSAELKIPGLD---AECVICLSEF-------------- 135
            TPS  +SG      K F V K++A + +   D     C IC +                
Sbjct: 6   DTPSGTNSGAGK---KRFEVKKWNA-VALWAWDIVVDNCAICRNHIMDLCIECQANQASA 61

Query: 136 ASGELVRLLPKCNHGFHVRCIDKWLRLHSSCP 167
            S E       CNH FH  CI +WL+    CP
Sbjct: 62  TSEECTVAWGVCNHAFHFHCISRWLKTRQVCP 93


>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
           Ring-Box Protein 2
          Length = 81

 Score = 35.4 bits (80), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 120 KIPGLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRH 171
           ++  +DA C+ C +E    + V +  +CNH FH  C+  W++ ++ CP C+ 
Sbjct: 22  RVQVMDA-CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQ 72


>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
           Ligases: Conformational Control Of Conjugation
 pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
           Ligases: Conformational Control Of Conjugation
          Length = 106

 Score = 35.4 bits (80), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 35/92 (38%), Gaps = 21/92 (22%)

Query: 93  STPSVKSSGIKNNAIKTFPVVKYSAELKIPGLD---AECVICLSEF-------------- 135
            TPS  +SG      K F V K++A + +   D     C IC +                
Sbjct: 6   DTPSGTNSGAGK---KRFEVKKWNA-VALWAWDIVVDNCAICRNHIXDLCIECQANQASA 61

Query: 136 ASGELVRLLPKCNHGFHVRCIDKWLRLHSSCP 167
            S E       CNH FH  CI +WL+    CP
Sbjct: 62  TSEECTVAWGVCNHAFHFHCISRWLKTRQVCP 93


>pdb|2LGV|A Chain A, Rbx1
          Length = 100

 Score = 34.3 bits (77), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 20/47 (42%)

Query: 121 IPGLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCP 167
           I  L  EC    +   S E       CNH FH  CI +WL+    CP
Sbjct: 41  IMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCP 87


>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
           Site Containing Dna-Duplex
          Length = 117

 Score = 34.3 bits (77), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 128 CVICLSEFASG---ELVRLLPKCNHGFHVRCIDKWLRLHSSCP 167
           C+ C +  AS    E       CNH FH  CI +WL+    CP
Sbjct: 62  CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCP 104


>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
 pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
 pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
           Site Containing Dna-Duplex
 pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
           Site Containing Dna-Duplex
          Length = 98

 Score = 34.3 bits (77), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 128 CVICLSEFASG---ELVRLLPKCNHGFHVRCIDKWLRLHSSCP 167
           C+ C +  AS    E       CNH FH  CI +WL+    CP
Sbjct: 43  CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCP 85


>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
           Ligase Complex
 pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
           Ligase Complex
          Length = 90

 Score = 33.9 bits (76), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 20/47 (42%)

Query: 121 IPGLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCP 167
           I  L  EC    +   S E       CNH FH  CI +WL+    CP
Sbjct: 31  IMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCP 77


>pdb|3D4J|A Chain A, Crystal Structure Of Human Mevalonate Diphosphate
           Decarboxylase
 pdb|3D4J|B Chain B, Crystal Structure Of Human Mevalonate Diphosphate
           Decarboxylase
          Length = 400

 Score = 33.1 bits (74), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 15/52 (28%), Positives = 28/52 (53%)

Query: 106 AIKTFPVVKYSAELKIPGLDAECVICLSEFASGELVRLLPKCNHGFHVRCID 157
           +++T P++++ AE  +P   AE   C+ E       +L  K ++ FH  C+D
Sbjct: 218 SVETSPLLRFRAESVVPARMAEMARCIRERDFPSFAQLTMKDSNQFHATCLD 269


>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
          Length = 138

 Score = 32.3 bits (72), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 125 DAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCR 170
           + +C+IC   F       +   C H F   CI++W++    CP CR
Sbjct: 53  ELQCIICSEYFIEA----VTLNCAHSFCSYCINEWMKRKIECPICR 94


>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
          Length = 138

 Score = 32.3 bits (72), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 125 DAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCR 170
           + +C+IC   F       +   C H F   CI++W++    CP CR
Sbjct: 53  ELQCIICSEYFIEA----VTLNCAHSFCSYCINEWMKRKIECPICR 94


>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
           HETERODIMER
 pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
           HETERODIMER
 pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
           HETERODIMER
 pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
           HETERODIMER
 pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
           HETERODIMER
          Length = 149

 Score = 32.0 bits (71), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 125 DAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCR 170
           + +C+IC   F       +   C H F   CI++W++    CP CR
Sbjct: 64  ELQCIICSEYFIEA----VTLNCAHSFCSYCINEWMKRKIECPICR 105


>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
 pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
          Length = 99

 Score = 31.6 bits (70), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 128 CVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKC 169
           C IC   F    +  ++P+C+H +   CI K+L   + CP C
Sbjct: 25  CGICFEYF---NIAMIIPQCSHNYCSLCIRKFLSYKTQCPTC 63


>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
           Resonance Spectroscopy; A New Structural Class Of Zinc-
           Finger
          Length = 68

 Score = 30.8 bits (68), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 128 CVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCR 170
           C ICL + ++  +   LP C H F   CI +W+R + +CP C+
Sbjct: 8   CPICLEDPSNYSMA--LP-CLHAFCYVCITRWIRQNPTCPLCK 47


>pdb|1V87|A Chain A, Solution Structure Of The Ring-H2 Finger Domain Of Mouse
           Deltex Protein 2
          Length = 114

 Score = 30.8 bits (68), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 15/59 (25%)

Query: 112 VVKYSAELKIPGLDAECVICLSEFASGE--------------LVRLLPKCNHGFHVRCI 156
           + KY+ ELK+   + +C+IC+ + A                 +V  L KC+H FH+ C+
Sbjct: 13  IRKYTEELKVA-PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCL 70


>pdb|3F0N|A Chain A, Mus Musculus Mevalonate Pyrophosphate Decarboxylase
 pdb|3F0N|B Chain B, Mus Musculus Mevalonate Pyrophosphate Decarboxylase
          Length = 414

 Score = 28.9 bits (63), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 14/56 (25%), Positives = 27/56 (48%)

Query: 104 NNAIKTFPVVKYSAELKIPGLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKW 159
             +++T  ++K+ AE  +P    E   C+ E       +L  K ++ FH  C+D +
Sbjct: 230 QTSVETSTLLKFRAESVVPERMKEMTRCIQEQDFQGFAQLTMKDSNQFHATCLDTF 285


>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
           Northeast Structural Genomics Consortium Target Ht2b
          Length = 52

 Score = 28.9 bits (63), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 128 CVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRH 171
           C ICL +  +  +V  +  C H  H  C ++ L+    CP C H
Sbjct: 8   CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCMH 51


>pdb|3EGC|A Chain A, Crystal Structure Of A Putative Ribose Operon Repressor
           From Burkholderia Thailandensis
 pdb|3EGC|B Chain B, Crystal Structure Of A Putative Ribose Operon Repressor
           From Burkholderia Thailandensis
 pdb|3EGC|C Chain C, Crystal Structure Of A Putative Ribose Operon Repressor
           From Burkholderia Thailandensis
 pdb|3EGC|D Chain D, Crystal Structure Of A Putative Ribose Operon Repressor
           From Burkholderia Thailandensis
 pdb|3EGC|E Chain E, Crystal Structure Of A Putative Ribose Operon Repressor
           From Burkholderia Thailandensis
 pdb|3EGC|F Chain F, Crystal Structure Of A Putative Ribose Operon Repressor
           From Burkholderia Thailandensis
          Length = 291

 Score = 28.9 bits (63), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 4/31 (12%)

Query: 108 KTFPVVKYSAELKIPGLDAECVICLSEFASG 138
           KTFP+V  + EL+IPG    C   LSE   G
Sbjct: 86  KTFPIVAVNRELRIPG----CGAVLSENVRG 112


>pdb|2VOB|A Chain A, Trypanothione Synthetase
 pdb|2VOB|B Chain B, Trypanothione Synthetase
 pdb|2VPS|A Chain A, Structure Of The Bifunctional Leishmania Major
           Trypanothione Synthetase-Amidase
          Length = 652

 Score = 27.3 bits (59), Expect = 6.2,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 148 NHGFHVRCIDKWLRLHSSCPKCRHCLIETCEKI 180
           NH FH+RC+    +LH+   +    +IE+ EK+
Sbjct: 269 NHEFHLRCVAYGTQLHAIFMEATAQVIESDEKL 301


>pdb|2VPM|A Chain A, Trypanothione Synthetase
 pdb|2VPM|B Chain B, Trypanothione Synthetase
          Length = 653

 Score = 27.3 bits (59), Expect = 6.2,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 148 NHGFHVRCIDKWLRLHSSCPKCRHCLIETCEKI 180
           NH FH+RC+    +LH+   +    +IE+ EK+
Sbjct: 270 NHEFHLRCVAYGTQLHAIFMEATAQVIESDEKL 302


>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
 pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
          Length = 71

 Score = 26.9 bits (58), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 122 PGLDAECVICLSEFA----SGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCR 170
           P     C IC+  ++    +G L+ +  +C H F  +C+   L+  ++CP CR
Sbjct: 7   PSGTVSCPICMDGYSEIVQNGRLI-VSTECGHVFCSQCLRDSLKNANTCPTCR 58


>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
           And Chy Zinc Finger Domain-Containing Protein 1 From Mus
           Musculus
          Length = 55

 Score = 26.9 bits (58), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 128 CVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKC 169
           C ICL +  +  +V  +  C H  H  C ++ L+    CP C
Sbjct: 8   CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,546,681
Number of Sequences: 62578
Number of extensions: 183578
Number of successful extensions: 334
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 298
Number of HSP's gapped (non-prelim): 39
length of query: 216
length of database: 14,973,337
effective HSP length: 95
effective length of query: 121
effective length of database: 9,028,427
effective search space: 1092439667
effective search space used: 1092439667
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)