Query 035743
Match_columns 216
No_of_seqs 186 out of 1730
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 09:47:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035743.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035743hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.8 3.2E-19 1.1E-23 128.9 6.3 81 94-175 9-89 (91)
2 1x4j_A Ring finger protein 38; 99.7 7E-18 2.4E-22 117.2 2.6 69 106-176 5-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.6 9.4E-17 3.2E-21 104.7 4.4 51 124-174 4-54 (55)
4 2ep4_A Ring finger protein 24; 99.6 3.1E-16 1.1E-20 108.4 4.3 54 123-177 13-66 (74)
5 2ect_A Ring finger protein 126 99.6 9.1E-16 3.1E-20 107.1 5.5 53 123-176 13-65 (78)
6 2kiz_A E3 ubiquitin-protein li 99.6 5.9E-16 2E-20 105.5 4.4 53 123-176 12-64 (69)
7 2ecl_A Ring-box protein 2; RNF 99.6 6.3E-16 2.2E-20 109.2 3.0 52 125-176 15-77 (81)
8 2ecm_A Ring finger and CHY zin 99.5 4.4E-15 1.5E-19 96.6 4.2 50 124-174 4-54 (55)
9 1v87_A Deltex protein 2; ring- 99.5 1.4E-14 4.9E-19 108.0 3.8 51 125-176 25-95 (114)
10 2d8s_A Cellular modulator of i 99.5 1.9E-14 6.5E-19 101.6 4.0 58 117-176 7-71 (80)
11 2ea6_A Ring finger protein 4; 99.5 1.7E-14 5.8E-19 97.8 3.4 52 123-175 13-68 (69)
12 3ng2_A RNF4, snurf, ring finge 99.5 1.2E-14 4.1E-19 99.3 2.4 52 123-175 8-63 (71)
13 3dpl_R Ring-box protein 1; ubi 99.5 3.1E-14 1.1E-18 105.7 3.7 50 124-174 36-100 (106)
14 2xeu_A Ring finger protein 4; 99.4 1.8E-14 6.3E-19 96.2 2.0 52 124-176 2-57 (64)
15 2ecn_A Ring finger protein 141 99.4 3.5E-14 1.2E-18 96.9 1.9 49 123-176 13-61 (70)
16 1chc_A Equine herpes virus-1 r 99.4 1.1E-13 3.7E-18 93.8 4.2 49 124-175 4-52 (68)
17 2d8t_A Dactylidin, ring finger 99.4 8.9E-14 3E-18 95.3 3.3 50 123-176 13-62 (71)
18 2djb_A Polycomb group ring fin 99.4 2.6E-13 8.8E-18 93.3 3.8 50 123-175 13-62 (72)
19 4a0k_B E3 ubiquitin-protein li 99.4 6.4E-14 2.2E-18 105.7 0.3 50 124-174 47-111 (117)
20 2ct2_A Tripartite motif protei 99.4 4.2E-13 1.4E-17 95.1 4.2 52 123-175 13-68 (88)
21 2csy_A Zinc finger protein 183 99.3 8.7E-13 3E-17 92.5 4.3 48 123-174 13-60 (81)
22 2yur_A Retinoblastoma-binding 99.3 1.2E-12 4E-17 90.5 4.7 51 123-176 13-65 (74)
23 2ct0_A Non-SMC element 1 homol 99.3 1.3E-12 4.6E-17 90.7 4.1 51 122-175 12-64 (74)
24 2ysl_A Tripartite motif-contai 99.3 1.8E-12 6.1E-17 88.9 4.5 49 123-175 18-69 (73)
25 4ayc_A E3 ubiquitin-protein li 99.3 8.8E-13 3E-17 101.8 2.6 46 126-175 54-99 (138)
26 2ecy_A TNF receptor-associated 99.3 1.8E-12 6.2E-17 87.4 3.7 49 123-175 13-62 (66)
27 4ap4_A E3 ubiquitin ligase RNF 99.2 1.7E-12 6E-17 98.2 2.4 53 124-177 6-62 (133)
28 2egp_A Tripartite motif-contai 99.2 2.8E-12 9.7E-17 89.1 2.3 49 123-175 10-65 (79)
29 3lrq_A E3 ubiquitin-protein li 99.2 5.2E-12 1.8E-16 92.3 3.4 48 125-175 22-70 (100)
30 2ecv_A Tripartite motif-contai 99.2 8.6E-12 2.9E-16 87.4 4.4 49 123-175 17-71 (85)
31 2ecw_A Tripartite motif-contai 99.2 8.3E-12 2.8E-16 87.5 4.3 49 123-175 17-71 (85)
32 2ysj_A Tripartite motif-contai 99.2 1.1E-11 3.6E-16 82.8 4.4 43 123-169 18-63 (63)
33 1t1h_A Gspef-atpub14, armadill 99.2 7.6E-12 2.6E-16 86.9 3.8 48 124-175 7-55 (78)
34 4ap4_A E3 ubiquitin ligase RNF 99.2 4.5E-12 1.5E-16 95.9 2.7 53 123-176 70-126 (133)
35 2ecj_A Tripartite motif-contai 99.2 1.3E-11 4.4E-16 80.7 3.8 43 123-169 13-58 (58)
36 2y43_A E3 ubiquitin-protein li 99.2 1.1E-11 3.8E-16 90.0 3.8 48 125-175 22-69 (99)
37 1g25_A CDK-activating kinase a 99.2 8.1E-12 2.8E-16 83.9 2.7 50 125-175 3-55 (65)
38 2ckl_A Polycomb group ring fin 99.2 1.1E-11 3.7E-16 91.6 2.8 48 125-175 15-62 (108)
39 2ckl_B Ubiquitin ligase protei 99.1 2.8E-11 9.7E-16 95.8 3.7 48 125-175 54-102 (165)
40 3fl2_A E3 ubiquitin-protein li 99.1 2.7E-11 9.2E-16 91.6 3.2 47 125-175 52-99 (124)
41 3ztg_A E3 ubiquitin-protein li 99.1 3.9E-11 1.4E-15 85.8 3.9 49 123-174 11-61 (92)
42 1jm7_A BRCA1, breast cancer ty 99.1 4.6E-11 1.6E-15 88.2 3.3 46 126-175 22-70 (112)
43 1bor_A Transcription factor PM 99.0 5.6E-11 1.9E-15 77.8 2.2 48 123-177 4-51 (56)
44 3l11_A E3 ubiquitin-protein li 99.0 5.2E-11 1.8E-15 88.8 1.7 47 125-175 15-62 (115)
45 1e4u_A Transcriptional repress 99.0 2.1E-10 7.2E-15 80.3 4.4 53 123-176 9-63 (78)
46 3hct_A TNF receptor-associated 99.0 8.3E-11 2.8E-15 88.2 2.4 48 124-175 17-65 (118)
47 1z6u_A NP95-like ring finger p 99.0 1.2E-10 4.1E-15 91.3 3.4 48 125-176 78-126 (150)
48 1rmd_A RAG1; V(D)J recombinati 99.0 1.5E-10 5.2E-15 86.3 3.4 47 125-175 23-70 (116)
49 2vje_A E3 ubiquitin-protein li 99.0 9.7E-11 3.3E-15 78.8 1.8 47 124-174 7-56 (64)
50 2y1n_A E3 ubiquitin-protein li 99.0 2.6E-10 8.8E-15 101.8 3.8 49 124-176 331-380 (389)
51 3k1l_B Fancl; UBC, ring, RWD, 98.9 4E-10 1.4E-14 98.6 3.2 53 123-175 306-373 (381)
52 2vje_B MDM4 protein; proto-onc 98.9 2.8E-10 9.5E-15 76.3 1.7 48 125-174 7-55 (63)
53 1jm7_B BARD1, BRCA1-associated 98.9 5.1E-10 1.7E-14 83.8 3.2 44 125-174 22-66 (117)
54 3knv_A TNF receptor-associated 98.9 3.4E-10 1.2E-14 87.8 1.8 48 123-174 29-77 (141)
55 2kr4_A Ubiquitin conjugation f 98.9 1.2E-09 4.1E-14 77.5 4.4 48 124-175 13-60 (85)
56 4ic3_A E3 ubiquitin-protein li 98.8 7.2E-10 2.5E-14 76.5 1.8 42 126-175 25-67 (74)
57 2kre_A Ubiquitin conjugation f 98.8 1.3E-09 4.4E-14 79.8 3.2 48 124-175 28-75 (100)
58 1wgm_A Ubiquitin conjugation f 98.8 2.5E-09 8.6E-14 77.9 4.5 48 124-175 21-69 (98)
59 1vyx_A ORF K3, K3RING; zinc-bi 98.8 3.2E-09 1.1E-13 70.6 3.0 48 123-174 4-58 (60)
60 2ea5_A Cell growth regulator w 98.7 1.2E-08 4E-13 69.4 4.3 46 123-176 13-59 (68)
61 3hcs_A TNF receptor-associated 98.7 5E-09 1.7E-13 83.1 2.4 49 123-175 16-65 (170)
62 1wim_A KIAA0161 protein; ring 98.7 6.9E-09 2.4E-13 74.6 2.6 48 124-172 4-61 (94)
63 2c2l_A CHIP, carboxy terminus 98.6 1.6E-08 5.5E-13 85.3 4.5 48 124-175 207-255 (281)
64 2ecg_A Baculoviral IAP repeat- 98.6 1E-08 3.5E-13 70.7 2.4 42 126-175 26-68 (75)
65 2yu4_A E3 SUMO-protein ligase 98.6 1.4E-08 4.6E-13 73.3 2.7 46 124-172 6-59 (94)
66 2yho_A E3 ubiquitin-protein li 98.5 2.5E-08 8.5E-13 69.7 2.0 43 126-176 19-62 (79)
67 2f42_A STIP1 homology and U-bo 98.4 7.7E-08 2.6E-12 77.4 3.1 49 123-175 104-153 (179)
68 3t6p_A Baculoviral IAP repeat- 98.4 8.8E-08 3E-12 84.5 3.2 44 124-175 294-338 (345)
69 2bay_A PRE-mRNA splicing facto 98.3 2.2E-07 7.5E-12 61.8 2.1 47 126-176 4-51 (61)
70 3htk_C E3 SUMO-protein ligase 98.3 3.3E-07 1.1E-11 77.6 3.0 47 125-174 181-231 (267)
71 3vk6_A E3 ubiquitin-protein li 98.1 1.2E-06 4.1E-11 63.4 2.9 46 127-175 3-49 (101)
72 3nw0_A Non-structural maintena 98.0 3.6E-06 1.2E-10 70.5 4.1 49 123-174 178-228 (238)
73 2ko5_A Ring finger protein Z; 96.6 0.0016 5.3E-08 46.4 3.5 47 126-177 29-75 (99)
74 2lri_C Autoimmune regulator; Z 96.4 0.0022 7.5E-08 42.9 3.2 46 123-172 10-59 (66)
75 1we9_A PHD finger family prote 93.9 0.02 6.9E-07 37.5 1.5 48 124-171 5-57 (64)
76 1wil_A KIAA1045 protein; ring 93.8 0.051 1.7E-06 37.9 3.3 35 123-159 13-47 (89)
77 1mm2_A MI2-beta; PHD, zinc fin 93.7 0.043 1.5E-06 35.8 2.8 47 123-173 7-57 (61)
78 3o36_A Transcription intermedi 93.6 0.049 1.7E-06 43.2 3.6 47 124-174 3-53 (184)
79 3u5n_A E3 ubiquitin-protein li 93.5 0.035 1.2E-06 44.9 2.5 47 123-173 5-55 (207)
80 2jun_A Midline-1; B-BOX, TRIM, 93.3 0.039 1.3E-06 39.1 2.2 35 125-160 3-38 (101)
81 3lqh_A Histone-lysine N-methyl 92.6 0.074 2.5E-06 42.5 3.1 49 126-174 3-65 (183)
82 2l5u_A Chromodomain-helicase-D 92.5 0.073 2.5E-06 34.7 2.5 45 123-171 9-57 (61)
83 2puy_A PHD finger protein 21A; 92.4 0.027 9.3E-07 36.5 0.3 47 124-174 4-54 (60)
84 2yql_A PHD finger protein 21A; 92.0 0.052 1.8E-06 34.6 1.3 45 123-171 7-55 (56)
85 1xwh_A Autoimmune regulator; P 91.0 0.078 2.7E-06 35.0 1.3 45 123-171 6-54 (66)
86 3v43_A Histone acetyltransfera 90.6 0.13 4.5E-06 37.5 2.4 45 127-171 63-111 (112)
87 2k16_A Transcription initiatio 90.0 0.074 2.5E-06 35.9 0.6 49 124-173 17-69 (75)
88 1fp0_A KAP-1 corepressor; PHD 89.7 0.29 9.8E-06 34.4 3.4 46 123-172 23-72 (88)
89 2kgg_A Histone demethylase jar 88.7 0.26 8.9E-06 30.8 2.4 44 127-170 4-52 (52)
90 2ro1_A Transcription intermedi 88.5 0.22 7.6E-06 39.7 2.4 44 125-172 2-49 (189)
91 2yt5_A Metal-response element- 88.3 0.3 1E-05 31.9 2.6 49 123-171 4-60 (66)
92 2ysm_A Myeloid/lymphoid or mix 88.2 0.35 1.2E-05 34.9 3.1 48 123-171 5-56 (111)
93 1f62_A Transcription factor WS 87.5 0.33 1.1E-05 30.0 2.3 44 127-171 2-49 (51)
94 2l43_A N-teminal domain from h 87.4 0.21 7.3E-06 34.9 1.5 49 123-171 23-74 (88)
95 1wep_A PHF8; structural genomi 87.3 0.45 1.5E-05 32.3 3.1 48 125-173 12-64 (79)
96 2e6r_A Jumonji/ARID domain-con 87.1 0.2 6.8E-06 35.4 1.2 49 124-173 15-67 (92)
97 2vpb_A Hpygo1, pygopus homolog 86.4 0.36 1.2E-05 31.8 2.1 35 124-158 7-42 (65)
98 1wee_A PHD finger family prote 85.6 0.19 6.3E-06 33.7 0.4 46 125-171 16-65 (72)
99 1wev_A Riken cDNA 1110020M19; 85.1 0.24 8.2E-06 34.6 0.8 49 125-173 16-73 (88)
100 2ri7_A Nucleosome-remodeling f 84.4 0.18 6.3E-06 39.3 -0.1 47 124-171 7-58 (174)
101 2kwj_A Zinc finger protein DPF 84.3 0.49 1.7E-05 34.5 2.2 46 126-171 2-60 (114)
102 3shb_A E3 ubiquitin-protein li 84.1 0.46 1.6E-05 32.4 1.8 44 127-171 28-76 (77)
103 2lv9_A Histone-lysine N-methyl 84.0 0.89 3E-05 32.2 3.4 46 125-172 28-76 (98)
104 2e6s_A E3 ubiquitin-protein li 83.7 0.57 1.9E-05 31.9 2.2 45 126-171 27-76 (77)
105 4gne_A Histone-lysine N-methyl 82.2 1.3 4.5E-05 32.0 3.7 45 123-173 13-63 (107)
106 3v43_A Histone acetyltransfera 81.6 1.4 4.8E-05 31.8 3.8 47 125-171 5-63 (112)
107 3asl_A E3 ubiquitin-protein li 81.6 0.8 2.8E-05 30.5 2.3 44 127-171 20-68 (70)
108 1wen_A Inhibitor of growth fam 81.6 1.7 5.9E-05 28.9 3.9 44 124-172 15-65 (71)
109 2xb1_A Pygopus homolog 2, B-ce 81.5 1 3.4E-05 32.4 2.9 47 126-172 4-61 (105)
110 1weu_A Inhibitor of growth fam 80.3 1.8 6.2E-05 30.4 3.8 44 124-172 35-85 (91)
111 1wem_A Death associated transc 79.6 0.54 1.9E-05 31.6 0.9 45 125-171 16-69 (76)
112 3o70_A PHD finger protein 13; 79.1 0.85 2.9E-05 30.2 1.7 46 124-171 18-66 (68)
113 2ku3_A Bromodomain-containing 77.9 1.5 5.3E-05 29.2 2.7 49 123-171 14-65 (71)
114 3ask_A E3 ubiquitin-protein li 76.5 1.1 3.9E-05 36.7 2.0 44 127-171 176-224 (226)
115 3t7l_A Zinc finger FYVE domain 75.9 0.25 8.5E-06 34.6 -1.8 48 126-173 21-74 (90)
116 2knc_A Integrin alpha-IIB; tra 75.6 6.8 0.00023 24.7 5.1 28 50-77 11-38 (54)
117 1g47_A Pinch protein; LIM doma 74.8 3.6 0.00012 26.8 4.0 42 124-175 10-51 (77)
118 2lbm_A Transcriptional regulat 74.3 3.2 0.00011 31.5 4.0 47 122-172 60-117 (142)
119 2yw8_A RUN and FYVE domain-con 72.9 3 0.0001 28.3 3.2 35 126-160 20-54 (82)
120 1y02_A CARP2, FYVE-ring finger 72.6 0.93 3.2E-05 33.6 0.5 46 126-171 20-65 (120)
121 3ql9_A Transcriptional regulat 72.5 4.1 0.00014 30.4 4.1 49 122-174 54-113 (129)
122 3c6w_A P28ING5, inhibitor of g 72.0 1.4 4.7E-05 28.3 1.2 43 124-171 8-57 (59)
123 1z2q_A LM5-1; membrane protein 71.7 3.2 0.00011 28.3 3.2 35 125-159 21-55 (84)
124 1wfk_A Zinc finger, FYVE domai 71.1 3.8 0.00013 28.4 3.4 37 124-160 8-44 (88)
125 1vfy_A Phosphatidylinositol-3- 70.9 3.3 0.00011 27.4 3.0 34 126-159 12-45 (73)
126 3kqi_A GRC5, PHD finger protei 69.7 1.2 4.2E-05 29.8 0.6 46 126-172 11-61 (75)
127 1joc_A EEA1, early endosomal a 68.6 3.3 0.00011 30.6 2.8 34 126-159 70-103 (125)
128 2vnf_A ING 4, P29ING4, inhibit 68.6 1.7 5.9E-05 27.9 1.1 43 124-171 9-58 (60)
129 2l8s_A Integrin alpha-1; trans 68.5 11 0.00036 23.8 4.7 28 50-77 8-35 (54)
130 1x4u_A Zinc finger, FYVE domai 68.4 4 0.00014 27.8 3.0 34 126-159 15-48 (84)
131 1dvp_A HRS, hepatocyte growth 68.3 3.1 0.00011 33.5 2.9 36 125-160 161-196 (220)
132 3f6q_B LIM and senescent cell 68.2 4 0.00014 26.0 2.9 41 126-176 12-52 (72)
133 3m62_A Ubiquitin conjugation f 67.0 3.5 0.00012 40.6 3.4 49 123-175 889-938 (968)
134 1wyh_A SLIM 2, skeletal muscle 65.5 7.2 0.00025 24.9 3.8 40 126-175 6-45 (72)
135 3zyq_A Hepatocyte growth facto 65.5 3.8 0.00013 33.3 2.8 36 125-160 164-199 (226)
136 2l2t_A Receptor tyrosine-prote 65.4 8.1 0.00028 23.3 3.6 8 72-79 29-36 (44)
137 2ysm_A Myeloid/lymphoid or mix 65.4 1.5 5.2E-05 31.4 0.4 45 127-172 56-104 (111)
138 2cu8_A Cysteine-rich protein 2 64.9 7.6 0.00026 25.3 3.8 39 125-174 9-47 (76)
139 1x4k_A Skeletal muscle LIM-pro 64.4 4.9 0.00017 25.8 2.8 40 126-175 6-45 (72)
140 2g6q_A Inhibitor of growth pro 64.0 2.5 8.7E-05 27.3 1.2 43 124-171 10-59 (62)
141 2rsd_A E3 SUMO-protein ligase 63.8 1.6 5.6E-05 28.6 0.3 44 126-171 11-64 (68)
142 1wew_A DNA-binding family prot 63.7 1.8 6.2E-05 29.2 0.5 47 124-172 15-72 (78)
143 1x4l_A Skeletal muscle LIM-pro 63.6 8.1 0.00028 24.8 3.8 39 126-174 6-46 (72)
144 1x61_A Thyroid receptor intera 63.0 8.6 0.00029 24.6 3.8 39 126-174 6-44 (72)
145 2co8_A NEDD9 interacting prote 62.7 9.8 0.00034 25.3 4.2 40 125-175 15-54 (82)
146 1iml_A CRIP, cysteine rich int 62.6 4.5 0.00015 26.4 2.3 28 127-157 2-29 (76)
147 2dj7_A Actin-binding LIM prote 61.8 7.4 0.00025 25.9 3.4 39 125-174 15-53 (80)
148 2jwa_A Receptor tyrosine-prote 61.7 14 0.00049 22.2 4.2 25 51-76 14-38 (44)
149 3o7a_A PHD finger protein 13 v 60.8 2.4 8E-05 26.2 0.6 41 130-171 8-51 (52)
150 1x63_A Skeletal muscle LIM-pro 60.4 7.9 0.00027 25.5 3.3 40 126-175 16-55 (82)
151 1zbd_B Rabphilin-3A; G protein 59.9 6.1 0.00021 29.6 2.9 49 123-171 53-106 (134)
152 2kwj_A Zinc finger protein DPF 59.5 1.4 4.8E-05 32.0 -0.7 46 127-173 60-109 (114)
153 1x64_A Alpha-actinin-2 associa 59.4 9.1 0.00031 25.8 3.5 39 125-175 25-63 (89)
154 2gmg_A Hypothetical protein PF 59.2 2.9 0.0001 30.1 0.9 26 146-176 72-97 (105)
155 2jmi_A Protein YNG1, ING1 homo 55.9 4.5 0.00016 28.2 1.4 45 123-170 24-74 (90)
156 2ks1_B Epidermal growth factor 55.8 11 0.00036 22.8 2.9 13 64-76 26-38 (44)
157 1a7i_A QCRP2 (LIM1); LIM domai 55.5 5.2 0.00018 26.4 1.7 29 126-157 8-36 (81)
158 2jmo_A Parkin; IBR, E3 ligase, 55.1 4.3 0.00015 27.4 1.2 14 146-159 55-68 (80)
159 2cs3_A Protein C14ORF4, MY039 55.0 17 0.00059 24.9 4.2 39 123-162 13-52 (93)
160 2k1a_A Integrin alpha-IIB; sin 54.7 26 0.00088 20.8 4.5 26 50-75 9-34 (42)
161 1zfo_A LAsp-1; LIM domain, zin 54.6 5.8 0.0002 21.7 1.5 28 126-156 4-31 (31)
162 2l3k_A Rhombotin-2, linker, LI 54.5 8.2 0.00028 27.8 2.8 31 127-159 10-40 (123)
163 1x68_A FHL5 protein; four-and- 54.3 9.1 0.00031 24.9 2.7 39 126-174 6-46 (76)
164 1wd2_A Ariadne-1 protein homol 54.3 7.4 0.00025 24.9 2.2 37 126-162 7-47 (60)
165 2klu_A T-cell surface glycopro 52.7 11 0.00036 24.9 2.7 6 147-152 59-64 (70)
166 2l2t_A Receptor tyrosine-prote 52.6 12 0.00042 22.5 2.8 28 50-77 11-38 (44)
167 4bbq_A Lysine-specific demethy 52.2 2.6 8.7E-05 30.4 -0.4 45 127-171 61-113 (117)
168 2ct7_A Ring finger protein 31; 51.9 5.6 0.00019 27.2 1.4 37 128-164 28-66 (86)
169 3mpx_A FYVE, rhogef and PH dom 51.9 3 0.0001 36.6 0.0 36 125-160 375-410 (434)
170 2jny_A Uncharacterized BCR; st 51.6 4.8 0.00016 26.5 0.9 22 156-177 3-24 (67)
171 1z60_A TFIIH basal transcripti 51.0 7.8 0.00027 24.9 1.9 42 126-169 16-58 (59)
172 2pk7_A Uncharacterized protein 49.6 5.1 0.00018 26.5 0.8 22 156-177 1-22 (69)
173 3kv5_D JMJC domain-containing 48.8 3.7 0.00013 37.3 0.1 46 126-172 38-88 (488)
174 2cor_A Pinch protein; LIM doma 48.4 22 0.00076 23.3 4.0 39 125-175 15-53 (79)
175 3a1b_A DNA (cytosine-5)-methyl 47.4 11 0.00038 29.1 2.5 36 123-162 77-114 (159)
176 2d8x_A Protein pinch; LIM doma 47.3 15 0.00052 23.2 3.0 39 125-175 5-43 (70)
177 2zet_C Melanophilin; complex, 47.0 13 0.00043 28.5 2.8 47 124-171 67-116 (153)
178 2a20_A Regulating synaptic mem 45.8 5 0.00017 25.9 0.3 48 123-171 7-59 (62)
179 2d8y_A Eplin protein; LIM doma 44.7 19 0.00063 24.3 3.2 30 125-157 15-44 (91)
180 2kpi_A Uncharacterized protein 44.4 4.6 0.00016 25.6 -0.1 22 156-177 3-24 (56)
181 2rgt_A Fusion of LIM/homeobox 44.0 13 0.00043 28.3 2.5 38 126-173 66-103 (169)
182 1x62_A C-terminal LIM domain p 43.7 19 0.00065 23.5 3.1 38 125-174 15-52 (79)
183 2ehe_A Four and A half LIM dom 43.4 18 0.0006 23.7 2.9 39 126-174 16-54 (82)
184 2jr6_A UPF0434 protein NMA0874 43.1 5.1 0.00017 26.5 0.0 21 157-177 2-22 (68)
185 2pv0_B DNA (cytosine-5)-methyl 43.0 13 0.00046 32.7 2.7 45 123-171 91-147 (386)
186 3i2d_A E3 SUMO-protein ligase 42.7 17 0.00058 31.9 3.3 45 126-174 250-299 (371)
187 2egq_A FHL1 protein; LIM domai 42.7 17 0.00059 23.4 2.7 39 126-174 16-57 (77)
188 2knc_B Integrin beta-3; transm 42.7 46 0.0016 22.4 4.9 24 53-76 12-35 (79)
189 1wig_A KIAA1808 protein; LIM d 41.1 21 0.00073 23.0 2.9 37 126-174 6-42 (73)
190 2l4z_A DNA endonuclease RBBP8, 41.1 18 0.00061 26.2 2.8 38 126-174 62-99 (123)
191 2jp3_A FXYD domain-containing 40.7 60 0.002 21.2 4.9 29 45-73 9-37 (67)
192 4fo9_A E3 SUMO-protein ligase 40.6 18 0.00061 31.6 3.1 46 126-174 216-265 (360)
193 1rut_X Flinc4, fusion protein 40.5 14 0.00047 28.7 2.2 31 127-159 71-101 (188)
194 2js4_A UPF0434 protein BB2007; 40.2 5.6 0.00019 26.4 -0.1 21 157-177 2-22 (70)
195 2dar_A PDZ and LIM domain prot 38.7 27 0.00094 23.3 3.3 38 125-174 25-62 (90)
196 2cup_A Skeletal muscle LIM-pro 38.7 29 0.00098 23.6 3.5 28 126-156 6-34 (101)
197 2hf1_A Tetraacyldisaccharide-1 38.5 5.1 0.00017 26.5 -0.5 21 157-177 2-22 (68)
198 2xjy_A Rhombotin-2; oncoprotei 38.4 14 0.00049 26.5 1.9 38 127-174 68-105 (131)
199 2zxe_G FXYD10, phospholemman-l 37.7 55 0.0019 21.8 4.4 30 44-73 10-39 (74)
200 1x6a_A LIMK-2, LIM domain kina 37.7 25 0.00085 22.9 2.9 37 126-174 16-52 (81)
201 2lcq_A Putative toxin VAPC6; P 37.4 10 0.00036 28.8 1.0 25 144-174 135-159 (165)
202 2jtn_A LIM domain-binding prot 37.2 16 0.00056 28.0 2.2 8 148-155 140-147 (182)
203 1zza_A Stannin, AG8_1; helix, 37.2 40 0.0014 22.5 3.7 31 50-82 12-42 (90)
204 1weo_A Cellulose synthase, cat 37.1 38 0.0013 23.6 3.7 49 126-174 17-69 (93)
205 2d8z_A Four and A half LIM dom 36.5 29 0.00099 21.8 3.0 37 126-174 6-42 (70)
206 2jne_A Hypothetical protein YF 36.0 12 0.00043 26.5 1.1 40 126-174 33-72 (101)
207 2jvx_A NF-kappa-B essential mo 35.7 8.7 0.0003 20.9 0.2 12 164-175 4-15 (28)
208 1nyp_A Pinch protein; LIM doma 35.7 21 0.00073 22.2 2.2 37 126-174 6-42 (66)
209 1v6g_A Actin binding LIM prote 34.6 32 0.0011 22.4 3.0 37 126-174 16-52 (81)
210 2wwb_C SEC61BETA, protein tran 34.3 31 0.001 24.3 2.9 25 43-67 63-87 (96)
211 2d8v_A Zinc finger FYVE domain 33.9 35 0.0012 22.3 2.9 31 124-159 7-38 (67)
212 1afo_A Glycophorin A; integral 33.0 74 0.0025 18.5 4.4 12 66-77 23-34 (40)
213 2iyb_E Testin, TESS, TES; LIM 32.5 25 0.00084 22.0 2.1 39 126-174 3-43 (65)
214 2jo1_A Phospholemman; FXYD1, N 32.4 1.1E+02 0.0037 20.2 5.8 27 47-73 10-36 (72)
215 2l9u_A Receptor tyrosine-prote 31.7 74 0.0025 18.1 5.0 24 50-73 6-29 (40)
216 2jrp_A Putative cytoplasmic pr 31.7 23 0.00078 24.2 1.9 40 126-174 3-42 (81)
217 3pwf_A Rubrerythrin; non heme 31.4 28 0.00097 26.8 2.6 24 141-171 138-161 (170)
218 2cur_A Skeletal muscle LIM-pro 31.0 49 0.0017 20.6 3.4 37 126-174 6-42 (69)
219 1j2o_A FLIN2, fusion of rhombo 31.0 42 0.0014 23.5 3.3 28 126-156 4-31 (114)
220 3mjh_B Early endosome antigen 30.1 16 0.00054 20.7 0.7 10 165-174 7-16 (34)
221 2k5r_A Uncharacterized protein 30.0 13 0.00046 26.2 0.5 22 157-178 2-23 (97)
222 2cuq_A Four and A half LIM dom 29.4 39 0.0013 21.8 2.7 37 126-174 16-52 (80)
223 2ww9_C Protein transport prote 28.9 38 0.0013 23.4 2.6 24 43-66 54-77 (87)
224 1b8t_A Protein (CRP1); LIM dom 28.6 36 0.0012 26.3 2.8 31 125-158 115-145 (192)
225 6rxn_A Rubredoxin; electron tr 28.4 35 0.0012 20.6 2.1 8 165-172 32-39 (46)
226 2o35_A Hypothetical protein DU 28.2 15 0.00051 26.2 0.4 13 150-162 42-54 (105)
227 3fyb_A Protein of unknown func 27.8 15 0.00052 26.1 0.4 12 150-161 41-52 (104)
228 2dlo_A Thyroid receptor-intera 27.4 41 0.0014 21.8 2.6 38 125-174 15-52 (81)
229 3kv4_A PHD finger protein 8; e 26.1 13 0.00044 33.4 -0.3 45 128-172 7-56 (447)
230 2akl_A PHNA-like protein PA012 26.1 24 0.00082 26.4 1.2 25 126-150 28-53 (138)
231 2fiy_A Protein FDHE homolog; F 25.7 12 0.00042 31.9 -0.5 48 124-172 181-231 (309)
232 1x3h_A Leupaxin; paxillin fami 24.5 62 0.0021 20.7 3.1 38 126-175 16-53 (80)
233 1yuz_A Nigerythrin; rubrythrin 24.5 42 0.0014 26.5 2.6 25 141-172 171-195 (202)
234 2ku7_A MLL1 PHD3-CYP33 RRM chi 24.2 42 0.0015 23.7 2.4 28 145-172 6-44 (140)
235 1rh5_C Secbeta; protein transl 23.0 1.3E+02 0.0046 18.5 4.2 24 44-67 24-47 (53)
236 2xqn_T Testin, TESS; metal-bin 22.3 54 0.0018 23.1 2.6 39 126-174 64-104 (126)
237 2rdd_B UPF0092 membrane protei 21.5 1E+02 0.0035 17.3 3.2 6 71-76 19-24 (37)
238 1x4i_A Inhibitor of growth pro 21.1 35 0.0012 22.3 1.2 46 125-173 6-56 (70)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.77 E-value=3.2e-19 Score=128.87 Aligned_cols=81 Identities=28% Similarity=0.664 Sum_probs=71.5
Q ss_pred CCccccCCCChhHHhhCCccccCccccCCCCCcccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCccc
Q 035743 94 TPSVKSSGIKNNAIKTFPVVKYSAELKIPGLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCL 173 (216)
Q Consensus 94 ~~~~~~~~~~~~~i~~lp~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l 173 (216)
.......+++++.++.+|.+.+.......+.+.+|+||+++|..++.++.++ |||.||..||+.|++.+.+||+||..+
T Consensus 9 ~~~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~ 87 (91)
T 2l0b_A 9 SHMVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMF 87 (91)
T ss_dssp CCSSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBS
T ss_pred CCCcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccC
Confidence 3455678899999999999999876655566789999999999999999999 999999999999999999999999987
Q ss_pred cc
Q 035743 174 IE 175 (216)
Q Consensus 174 ~~ 175 (216)
..
T Consensus 88 ~~ 89 (91)
T 2l0b_A 88 PP 89 (91)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=7e-18 Score=117.22 Aligned_cols=69 Identities=35% Similarity=0.883 Sum_probs=57.7
Q ss_pred HHhhCCccccCccccCCCCCcccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCccccch
Q 035743 106 AIKTFPVVKYSAELKIPGLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLIET 176 (216)
Q Consensus 106 ~i~~lp~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (216)
.++.+|..+|..... ...+.+|+||+++|..++.++.++ |+|+||..||..|++.+.+||+||+.+.+.
T Consensus 5 ~i~~lp~~~~~~~~~-~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 5 SSGQLPSYRFNPNNH-QSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCSSCCCEEBCSSSC-SSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred hHhhCCcEEecCccc-cCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 345677777765433 345578999999999998999999 999999999999999999999999988754
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.64 E-value=9.4e-17 Score=104.69 Aligned_cols=51 Identities=49% Similarity=1.189 Sum_probs=46.4
Q ss_pred CCcccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCcccc
Q 035743 124 LDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLI 174 (216)
Q Consensus 124 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (216)
++.+|+||+++|.+++.+..++.|||.||..||..|++.+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 447899999999998888888779999999999999999999999998874
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=3.1e-16 Score=108.36 Aligned_cols=54 Identities=31% Similarity=0.906 Sum_probs=48.3
Q ss_pred CCCcccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCccccchh
Q 035743 123 GLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLIETC 177 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~~ 177 (216)
..+.+|+||+++|...+.+++++ |+|.||..||..|++.+.+||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 44578999999999988888898 9999999999999999999999999887533
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.60 E-value=9.1e-16 Score=107.05 Aligned_cols=53 Identities=51% Similarity=1.037 Sum_probs=47.9
Q ss_pred CCCcccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCccccch
Q 035743 123 GLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLIET 176 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (216)
..+.+|+||++.|...+.++.++ |+|.||..||..|++.+.+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 44578999999999888888898 999999999999999999999999988754
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=5.9e-16 Score=105.53 Aligned_cols=53 Identities=43% Similarity=0.907 Sum_probs=47.7
Q ss_pred CCCcccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCccccch
Q 035743 123 GLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLIET 176 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (216)
+.+.+|+||++.|..++.++.++ |||.||..||..|++.+.+||+||..+...
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 45578999999999888899999 999999999999999999999999988643
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=6.3e-16 Score=109.24 Aligned_cols=52 Identities=27% Similarity=0.735 Sum_probs=42.5
Q ss_pred CcccccccccccC-----------CcceeecCCCCCccCccchHHHhccCCCCccCCccccch
Q 035743 125 DAECVICLSEFAS-----------GELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLIET 176 (216)
Q Consensus 125 ~~~C~ICl~~~~~-----------~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (216)
+.+|+||+++|.+ ++.++.++.|+|.||.+||+.||+.+.+||+||+++..+
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 4568888888754 455666666999999999999999999999999987643
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.53 E-value=4.4e-15 Score=96.57 Aligned_cols=50 Identities=28% Similarity=0.653 Sum_probs=43.1
Q ss_pred CCcccccccccccCC-cceeecCCCCCccCccchHHHhccCCCCccCCcccc
Q 035743 124 LDAECVICLSEFASG-ELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLI 174 (216)
Q Consensus 124 ~~~~C~ICl~~~~~~-~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (216)
.+.+|+||++++.++ +.+..++ |||.||..||..|++.+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 347899999999654 4567777 9999999999999999999999998764
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.48 E-value=1.4e-14 Score=108.00 Aligned_cols=51 Identities=29% Similarity=0.744 Sum_probs=41.8
Q ss_pred CcccccccccccCCc---------------ceeecCCCCCccCccchHHHh-----ccCCCCccCCccccch
Q 035743 125 DAECVICLSEFASGE---------------LVRLLPKCNHGFHVRCIDKWL-----RLHSSCPKCRHCLIET 176 (216)
Q Consensus 125 ~~~C~ICl~~~~~~~---------------~~~~lp~C~H~FH~~CI~~Wl-----~~~~~CP~CR~~l~~~ 176 (216)
+.+|+||+++|.... .++.++ |+|+||..||..|+ +.+.+||+||+.+...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 468999999997643 344677 99999999999999 4567899999988654
No 10
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.9e-14 Score=101.61 Aligned_cols=58 Identities=24% Similarity=0.590 Sum_probs=46.4
Q ss_pred ccccCCCCCcccccccccccCCcceeecCCCC-----CccCccchHHHhccC--CCCccCCccccch
Q 035743 117 AELKIPGLDAECVICLSEFASGELVRLLPKCN-----HGFHVRCIDKWLRLH--SSCPKCRHCLIET 176 (216)
Q Consensus 117 ~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~-----H~FH~~CI~~Wl~~~--~~CP~CR~~l~~~ 176 (216)
........+..|.||+++|.+++.+ ++| |+ |.||.+||+.||+.+ .+||+||+.+...
T Consensus 7 ~~s~~~~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 7 GTSITPSSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CCCCCCTTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 3333445567899999999877766 588 96 999999999999765 4899999988643
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.7e-14 Score=97.76 Aligned_cols=52 Identities=25% Similarity=0.631 Sum_probs=43.8
Q ss_pred CCCcccccccccccCC----cceeecCCCCCccCccchHHHhccCCCCccCCccccc
Q 035743 123 GLDAECVICLSEFASG----ELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLIE 175 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (216)
..+.+|+||++.|.+. +.+..++ |||.||..||+.|++.+..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 3457899999999753 3446777 99999999999999999999999998753
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.47 E-value=1.2e-14 Score=99.27 Aligned_cols=52 Identities=25% Similarity=0.631 Sum_probs=44.2
Q ss_pred CCCcccccccccccCC----cceeecCCCCCccCccchHHHhccCCCCccCCccccc
Q 035743 123 GLDAECVICLSEFASG----ELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLIE 175 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (216)
+++.+|+||++.+.+. +.+..++ |||.||..||..|++.+.+||+||..+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 4457899999998753 4556777 99999999999999999999999998764
No 13
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.45 E-value=3.1e-14 Score=105.72 Aligned_cols=50 Identities=30% Similarity=0.638 Sum_probs=42.3
Q ss_pred CCcccccccccccCC---------------cceeecCCCCCccCccchHHHhccCCCCccCCcccc
Q 035743 124 LDAECVICLSEFASG---------------ELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLI 174 (216)
Q Consensus 124 ~~~~C~ICl~~~~~~---------------~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (216)
.++.|+||+++|... ..++.++ |+|.||..||+.||+.+.+||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 357899999999754 1356677 9999999999999999999999999854
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.45 E-value=1.8e-14 Score=96.16 Aligned_cols=52 Identities=25% Similarity=0.630 Sum_probs=44.0
Q ss_pred CCcccccccccccCC----cceeecCCCCCccCccchHHHhccCCCCccCCccccch
Q 035743 124 LDAECVICLSEFASG----ELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLIET 176 (216)
Q Consensus 124 ~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (216)
++.+|+||++.+.+. +.+..++ |||.||..||..|++.+.+||+||..+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 347899999999753 4456777 999999999999999999999999987643
No 15
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=3.5e-14 Score=96.92 Aligned_cols=49 Identities=41% Similarity=0.936 Sum_probs=42.7
Q ss_pred CCCcccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCccccch
Q 035743 123 GLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLIET 176 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (216)
..+.+|+||++.+.+ ..++ |||.||..||..|++.+..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 345789999999876 5677 999999999999999999999999887743
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.41 E-value=1.1e-13 Score=93.84 Aligned_cols=49 Identities=33% Similarity=0.845 Sum_probs=42.6
Q ss_pred CCcccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCccccc
Q 035743 124 LDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLIE 175 (216)
Q Consensus 124 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (216)
.+.+|+||++.+.+ ....++ |||.||..||..|++.+.+||+||..+..
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 45789999999865 356788 99999999999999999999999998864
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=8.9e-14 Score=95.35 Aligned_cols=50 Identities=32% Similarity=0.573 Sum_probs=42.8
Q ss_pred CCCcccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCccccch
Q 035743 123 GLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLIET 176 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (216)
..+.+|+||++.+.+ ...++ |||.||..||..|++.+..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 13 LTVPECAICLQTCVH---PVSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp SSCCBCSSSSSBCSS---EEEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred CCCCCCccCCcccCC---CEEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 345789999999865 35677 999999999999999999999999988743
No 18
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=2.6e-13 Score=93.27 Aligned_cols=50 Identities=24% Similarity=0.525 Sum_probs=42.0
Q ss_pred CCCcccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCccccc
Q 035743 123 GLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLIE 175 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (216)
+.+..|+||++.+.+ .+.+++ |||.||..||..|++.+..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 13 TPYILCSICKGYLID--ATTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp CGGGSCTTTSSCCSS--CEECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred CCCCCCCCCChHHHC--cCEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 345789999999876 244446 99999999999999999999999998764
No 19
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.36 E-value=6.4e-14 Score=105.71 Aligned_cols=50 Identities=32% Similarity=0.682 Sum_probs=0.9
Q ss_pred CCcccccccccccCC-------------c--ceeecCCCCCccCccchHHHhccCCCCccCCcccc
Q 035743 124 LDAECVICLSEFASG-------------E--LVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLI 174 (216)
Q Consensus 124 ~~~~C~ICl~~~~~~-------------~--~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (216)
.++.|+||+++|.+. + .+..++ |+|.||..||+.||+.+.+||+||++..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 347899999999752 2 222245 9999999999999999999999999854
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=4.2e-13 Score=95.14 Aligned_cols=52 Identities=31% Similarity=0.643 Sum_probs=44.1
Q ss_pred CCCcccccccccccCCcc-eeecCCCCCccCccchHHHhccC---CCCccCCccccc
Q 035743 123 GLDAECVICLSEFASGEL-VRLLPKCNHGFHVRCIDKWLRLH---SSCPKCRHCLIE 175 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~~~-~~~lp~C~H~FH~~CI~~Wl~~~---~~CP~CR~~l~~ 175 (216)
....+|+||++.|.+.+. ...++ |||.||..||..|++.+ ..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred cCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 345789999999987664 67787 99999999999999876 689999988754
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=8.7e-13 Score=92.54 Aligned_cols=48 Identities=23% Similarity=0.473 Sum_probs=41.5
Q ss_pred CCCcccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCcccc
Q 035743 123 GLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLI 174 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (216)
+...+|+||++.|.+ ..+++ |||.||..||..|++....||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQN---PVVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCS---EEECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcC---eeEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 345789999999966 34677 9999999999999999999999999874
No 22
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.32 E-value=1.2e-12 Score=90.51 Aligned_cols=51 Identities=22% Similarity=0.556 Sum_probs=41.3
Q ss_pred CCCcccccccccccCCcceeecCCCCCccCccchHHHhccC--CCCccCCccccch
Q 035743 123 GLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLH--SSCPKCRHCLIET 176 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~--~~CP~CR~~l~~~ 176 (216)
..+..|+||++.|.+. ..++.|||.||..||..|++.+ ..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 13 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp CGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred CCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 3457899999999763 4466699999999999999865 6899999976543
No 23
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=1.3e-12 Score=90.67 Aligned_cols=51 Identities=25% Similarity=0.660 Sum_probs=42.4
Q ss_pred CCCCcccccccccccCCcceeecCCCCCccCccchHHHhccC--CCCccCCccccc
Q 035743 122 PGLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLH--SSCPKCRHCLIE 175 (216)
Q Consensus 122 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~--~~CP~CR~~l~~ 175 (216)
.+...+|+||.+.+..++... .|+|.||..||..||+.+ .+||+||+....
T Consensus 12 ~~~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred cCCCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 345579999999998765443 599999999999999887 789999977653
No 24
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.8e-12 Score=88.86 Aligned_cols=49 Identities=24% Similarity=0.588 Sum_probs=40.7
Q ss_pred CCCcccccccccccCCcceeecCCCCCccCccchHHHhc---cCCCCccCCccccc
Q 035743 123 GLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLR---LHSSCPKCRHCLIE 175 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~---~~~~CP~CR~~l~~ 175 (216)
..+.+|+||++.+.+ ...++ |||.||..||..|++ .+..||+||..+..
T Consensus 18 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSBCSS---EEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred ccCCEeccCCcccCC---eEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 345789999999875 45667 999999999999996 45689999998764
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.28 E-value=8.8e-13 Score=101.83 Aligned_cols=46 Identities=33% Similarity=0.867 Sum_probs=41.0
Q ss_pred cccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCccccc
Q 035743 126 AECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLIE 175 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (216)
..|+||++.|.+ ...++ |||.||..||..|+..+.+||+||.++..
T Consensus 54 ~~C~iC~~~~~~---~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 54 LQCIICSEYFIE---AVTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp SBCTTTCSBCSS---EEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred CCCcccCcccCC---ceECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 579999999965 45678 99999999999999999999999998854
No 26
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.8e-12 Score=87.39 Aligned_cols=49 Identities=20% Similarity=0.525 Sum_probs=40.4
Q ss_pred CCCcccccccccccCCcceeecCCCCCccCccchHHHh-ccCCCCccCCccccc
Q 035743 123 GLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWL-RLHSSCPKCRHCLIE 175 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl-~~~~~CP~CR~~l~~ 175 (216)
..+..|+||++.+.+. ..++ |||.||..||..|+ +.+..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP---KQTE-CGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESSC---CCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcCe---eECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 3457899999998764 3367 99999999999999 456789999998764
No 27
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.24 E-value=1.7e-12 Score=98.22 Aligned_cols=53 Identities=25% Similarity=0.604 Sum_probs=44.8
Q ss_pred CCcccccccccccCC----cceeecCCCCCccCccchHHHhccCCCCccCCccccchh
Q 035743 124 LDAECVICLSEFASG----ELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLIETC 177 (216)
Q Consensus 124 ~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~~ 177 (216)
++.+|+||++.|.+. +.+..++ |||.||..||+.|++.+.+||+||..+....
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 457899999999753 4456777 9999999999999999999999999886543
No 28
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.22 E-value=2.8e-12 Score=89.06 Aligned_cols=49 Identities=29% Similarity=0.508 Sum_probs=41.2
Q ss_pred CCCcccccccccccCCcceeecCCCCCccCccchHHHhcc-------CCCCccCCccccc
Q 035743 123 GLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRL-------HSSCPKCRHCLIE 175 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-------~~~CP~CR~~l~~ 175 (216)
..+.+|+||++.|.+. ..++ |||.||..||..|++. ...||+||..+..
T Consensus 10 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTEP---LSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSSC---CCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCCe---eECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 3457899999998763 4577 9999999999999976 5689999998864
No 29
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.21 E-value=5.2e-12 Score=92.31 Aligned_cols=48 Identities=27% Similarity=0.635 Sum_probs=40.3
Q ss_pred CcccccccccccCCcceeecCCCCCccCccchHHHhccC-CCCccCCccccc
Q 035743 125 DAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLH-SSCPKCRHCLIE 175 (216)
Q Consensus 125 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~-~~CP~CR~~l~~ 175 (216)
+..|+||++.|.+ .+..++ |||.||..||..|++.+ ..||+||..+..
T Consensus 22 ~~~C~IC~~~~~~--p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 22 VFRCFICMEKLRD--ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HTBCTTTCSBCSS--EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCccCCccccC--ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 3689999999975 233377 99999999999999887 699999998854
No 30
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=8.6e-12 Score=87.40 Aligned_cols=49 Identities=31% Similarity=0.614 Sum_probs=41.3
Q ss_pred CCCcccccccccccCCcceeecCCCCCccCccchHHHhcc------CCCCccCCccccc
Q 035743 123 GLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRL------HSSCPKCRHCLIE 175 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~------~~~CP~CR~~l~~ 175 (216)
..+.+|+||++.+.+ ...++ |||.||..||..|++. ...||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 17 KEEVTCPICLELLTQ---PLSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCTTTCSCCSS---CBCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred cCCCCCCCCCcccCC---ceeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 345789999999876 34567 9999999999999977 7789999998774
No 31
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.21 E-value=8.3e-12 Score=87.49 Aligned_cols=49 Identities=29% Similarity=0.520 Sum_probs=41.2
Q ss_pred CCCcccccccccccCCcceeecCCCCCccCccchHHHhcc------CCCCccCCccccc
Q 035743 123 GLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRL------HSSCPKCRHCLIE 175 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~------~~~CP~CR~~l~~ 175 (216)
..+.+|+||++.+.+. ..++ |||.||..||..|+.. ...||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 17 KEEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CTTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred ccCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 3457899999998763 4677 9999999999999987 6689999998764
No 32
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.1e-11 Score=82.76 Aligned_cols=43 Identities=28% Similarity=0.645 Sum_probs=36.0
Q ss_pred CCCcccccccccccCCcceeecCCCCCccCccchHHHhc---cCCCCccC
Q 035743 123 GLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLR---LHSSCPKC 169 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~---~~~~CP~C 169 (216)
..+.+|+||++.+.+ ..+++ |||.||..||..|++ .+..||+|
T Consensus 18 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSS---CEECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCC---eEEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 345789999999876 35567 999999999999997 45689998
No 33
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.20 E-value=7.6e-12 Score=86.91 Aligned_cols=48 Identities=25% Similarity=0.538 Sum_probs=40.8
Q ss_pred CCcccccccccccCCcceeecCCCCCccCccchHHHhcc-CCCCccCCccccc
Q 035743 124 LDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRL-HSSCPKCRHCLIE 175 (216)
Q Consensus 124 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~~CP~CR~~l~~ 175 (216)
.+..|+||++.|.+ ...++ |||.||..||..|++. +.+||+||..+..
T Consensus 7 ~~~~C~IC~~~~~~---Pv~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELMKD---PVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCCSS---EEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred ccCCCCCccccccC---CEEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 45789999999876 34567 9999999999999987 7789999988753
No 34
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.20 E-value=4.5e-12 Score=95.94 Aligned_cols=53 Identities=25% Similarity=0.620 Sum_probs=44.4
Q ss_pred CCCcccccccccccCC----cceeecCCCCCccCccchHHHhccCCCCccCCccccch
Q 035743 123 GLDAECVICLSEFASG----ELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLIET 176 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (216)
+...+|+||++.|.+. .....++ |||.||..||+.|++.+.+||+||..+...
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 4457899999998752 3345676 999999999999999999999999988754
No 35
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.3e-11 Score=80.68 Aligned_cols=43 Identities=30% Similarity=0.887 Sum_probs=35.6
Q ss_pred CCCcccccccccccCCcceeecCCCCCccCccchHHHh---ccCCCCccC
Q 035743 123 GLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWL---RLHSSCPKC 169 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl---~~~~~CP~C 169 (216)
..+..|+||++.+.+. ..++ |||.||..||..|+ +.+..||+|
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3457899999999764 4577 99999999999995 456789998
No 36
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.18 E-value=1.1e-11 Score=90.03 Aligned_cols=48 Identities=29% Similarity=0.694 Sum_probs=40.6
Q ss_pred CcccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCccccc
Q 035743 125 DAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLIE 175 (216)
Q Consensus 125 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (216)
+..|+||++.|.+ .+..++ |||.||..||..|+..+..||+||..+..
T Consensus 22 ~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNI--AMIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSS--EEECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChhhCC--cCEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 3689999999976 233336 99999999999999999999999998764
No 37
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.17 E-value=8.1e-12 Score=83.90 Aligned_cols=50 Identities=24% Similarity=0.568 Sum_probs=39.6
Q ss_pred Ccccccccc-cccCCcce-eecCCCCCccCccchHHHhcc-CCCCccCCccccc
Q 035743 125 DAECVICLS-EFASGELV-RLLPKCNHGFHVRCIDKWLRL-HSSCPKCRHCLIE 175 (216)
Q Consensus 125 ~~~C~ICl~-~~~~~~~~-~~lp~C~H~FH~~CI~~Wl~~-~~~CP~CR~~l~~ 175 (216)
+..|+||++ .+.+.... ..++ |||.||..||+.|+.. +..||+||..+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 468999999 77665433 3466 9999999999999754 4679999998764
No 38
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.15 E-value=1.1e-11 Score=91.58 Aligned_cols=48 Identities=27% Similarity=0.652 Sum_probs=41.2
Q ss_pred CcccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCccccc
Q 035743 125 DAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLIE 175 (216)
Q Consensus 125 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (216)
+..|+||++.|.+ .+..++ |||.||..||..|+..+..||+||..+..
T Consensus 15 ~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFID--ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCCccCChHHhC--cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 4789999999865 344447 99999999999999999999999998775
No 39
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.11 E-value=2.8e-11 Score=95.82 Aligned_cols=48 Identities=33% Similarity=0.706 Sum_probs=40.5
Q ss_pred CcccccccccccCCcceeecCCCCCccCccchHHHhcc-CCCCccCCccccc
Q 035743 125 DAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRL-HSSCPKCRHCLIE 175 (216)
Q Consensus 125 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~~CP~CR~~l~~ 175 (216)
+..|+||++.|.+ .+..++ |||.||..||..|++. +..||+||..+..
T Consensus 54 ~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 3689999999976 344457 9999999999999987 7789999998853
No 40
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.11 E-value=2.7e-11 Score=91.58 Aligned_cols=47 Identities=28% Similarity=0.570 Sum_probs=39.7
Q ss_pred CcccccccccccCCcceeecCCCCCccCccchHHHhccCC-CCccCCccccc
Q 035743 125 DAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHS-SCPKCRHCLIE 175 (216)
Q Consensus 125 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~-~CP~CR~~l~~ 175 (216)
+..|+||++.|.+ ...++ |||.||..||..|+..+. .||+||..+..
T Consensus 52 ~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFR---PITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcC---cEEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 3689999999975 45577 999999999999997554 89999998864
No 41
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.11 E-value=3.9e-11 Score=85.82 Aligned_cols=49 Identities=22% Similarity=0.576 Sum_probs=40.0
Q ss_pred CCCcccccccccccCCcceeecCCCCCccCccchHHHhccC--CCCccCCcccc
Q 035743 123 GLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLH--SSCPKCRHCLI 174 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~--~~CP~CR~~l~ 174 (216)
..+..|+||++.|.+. ..++.|||.||..||..|+..+ ..||+||..+.
T Consensus 11 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 4457899999998753 4565599999999999999654 58999999873
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.08 E-value=4.6e-11 Score=88.24 Aligned_cols=46 Identities=30% Similarity=0.630 Sum_probs=38.9
Q ss_pred cccccccccccCCcceeecCCCCCccCccchHHHhccCC---CCccCCccccc
Q 035743 126 AECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHS---SCPKCRHCLIE 175 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~---~CP~CR~~l~~ 175 (216)
.+|+||++.+.+. ..++ |||.||..||..|+..+. .||+||..+..
T Consensus 22 ~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 22 LECPICLELIKEP---VSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp TSCSSSCCCCSSC---CBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCcccChhhcCe---EECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 5899999998653 4467 999999999999998654 89999998764
No 43
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.05 E-value=5.6e-11 Score=77.79 Aligned_cols=48 Identities=25% Similarity=0.464 Sum_probs=39.4
Q ss_pred CCCcccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCccccchh
Q 035743 123 GLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLIETC 177 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~~ 177 (216)
.++..|+||++.|.+ .+.++ |||.||..||..| ...||+||+.+....
T Consensus 4 ~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC---PKLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSCBC---CSCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred ccCCCceEeCCccCC---eEEcC-CCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 345789999999976 36788 9999999999985 668999998876543
No 44
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.03 E-value=5.2e-11 Score=88.78 Aligned_cols=47 Identities=28% Similarity=0.670 Sum_probs=40.3
Q ss_pred CcccccccccccCCcceeecCCCCCccCccchHHHhcc-CCCCccCCccccc
Q 035743 125 DAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRL-HSSCPKCRHCLIE 175 (216)
Q Consensus 125 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~~CP~CR~~l~~ 175 (216)
+..|+||++.+.+ ...++ |||.||..||..|+.. +..||+||..+..
T Consensus 15 ~~~C~iC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVE---PVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSS---CEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccCc---eeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 4789999999875 35667 9999999999999976 5689999998875
No 45
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.02 E-value=2.1e-10 Score=80.30 Aligned_cols=53 Identities=19% Similarity=0.406 Sum_probs=40.5
Q ss_pred CCCcccccccccccCCcc-eeecCCCCCccCccchHHHhcc-CCCCccCCccccch
Q 035743 123 GLDAECVICLSEFASGEL-VRLLPKCNHGFHVRCIDKWLRL-HSSCPKCRHCLIET 176 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~~~-~~~lp~C~H~FH~~CI~~Wl~~-~~~CP~CR~~l~~~ 176 (216)
+++.+|+||++.+...+. +.-++ |||.||..|+..|+.. ...||.||+.+...
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred ccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 445789999999865332 22245 9999999999999743 56899999988754
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.01 E-value=8.3e-11 Score=88.24 Aligned_cols=48 Identities=35% Similarity=0.637 Sum_probs=40.9
Q ss_pred CCcccccccccccCCcceeecCCCCCccCccchHHHhccCC-CCccCCccccc
Q 035743 124 LDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHS-SCPKCRHCLIE 175 (216)
Q Consensus 124 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~-~CP~CR~~l~~ 175 (216)
.+..|+||++.+.+. ..++ |||.||..||..|++.+. .||+||..+..
T Consensus 17 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 17 SKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 447899999998763 5577 999999999999998765 89999998865
No 47
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.01 E-value=1.2e-10 Score=91.28 Aligned_cols=48 Identities=27% Similarity=0.556 Sum_probs=40.6
Q ss_pred CcccccccccccCCcceeecCCCCCccCccchHHHhccCC-CCccCCccccch
Q 035743 125 DAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHS-SCPKCRHCLIET 176 (216)
Q Consensus 125 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~-~CP~CR~~l~~~ 176 (216)
+..|+||++.|.+ ...++ |||.||..||..|+.... .||+||..+...
T Consensus 78 ~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQ---PVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcC---CEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 3689999999876 34577 999999999999998765 899999988754
No 48
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.00 E-value=1.5e-10 Score=86.35 Aligned_cols=47 Identities=32% Similarity=0.582 Sum_probs=40.2
Q ss_pred CcccccccccccCCcceeecCCCCCccCccchHHHhcc-CCCCccCCccccc
Q 035743 125 DAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRL-HSSCPKCRHCLIE 175 (216)
Q Consensus 125 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~~CP~CR~~l~~ 175 (216)
+..|+||++.+.+ ...++ |||.||..||..|+.. +..||+||..+..
T Consensus 23 ~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILAD---PVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhcC---cEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 3689999999865 34577 9999999999999987 6789999998764
No 49
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.99 E-value=9.7e-11 Score=78.82 Aligned_cols=47 Identities=23% Similarity=0.451 Sum_probs=39.2
Q ss_pred CCcccccccccccCCcceeec--CCCCCc-cCccchHHHhccCCCCccCCcccc
Q 035743 124 LDAECVICLSEFASGELVRLL--PKCNHG-FHVRCIDKWLRLHSSCPKCRHCLI 174 (216)
Q Consensus 124 ~~~~C~ICl~~~~~~~~~~~l--p~C~H~-FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (216)
++.+|.||++.+.+ ...+ | |||. |+.+|+..|.+.+..||+||+.+.
T Consensus 7 ~~~~C~IC~~~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKN---GCIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSC---EEEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCC---EEEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 34689999998765 2343 8 9999 789999999988889999999875
No 50
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.96 E-value=2.6e-10 Score=101.80 Aligned_cols=49 Identities=29% Similarity=0.634 Sum_probs=41.9
Q ss_pred CCcccccccccccCCcceeecCCCCCccCccchHHHhc-cCCCCccCCccccch
Q 035743 124 LDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLR-LHSSCPKCRHCLIET 176 (216)
Q Consensus 124 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-~~~~CP~CR~~l~~~ 176 (216)
...+|+||++.+.+ ...+| |||.||..|+..|+. .+..||+||..+...
T Consensus 331 ~~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 331 TFQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 34689999999855 56788 999999999999998 678999999988753
No 51
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.91 E-value=4e-10 Score=98.63 Aligned_cols=53 Identities=26% Similarity=0.600 Sum_probs=40.5
Q ss_pred CCCcccccccccccCCccee----ecCCCCCccCccchHHHhccC-----------CCCccCCccccc
Q 035743 123 GLDAECVICLSEFASGELVR----LLPKCNHGFHVRCIDKWLRLH-----------SSCPKCRHCLIE 175 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~~~~~----~lp~C~H~FH~~CI~~Wl~~~-----------~~CP~CR~~l~~ 175 (216)
+...+|+||++.+.++..+. ..++|+|.||..||.+||+.. .+||+||.++..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 45679999999998733221 123599999999999999752 369999998864
No 52
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.91 E-value=2.8e-10 Score=76.32 Aligned_cols=48 Identities=19% Similarity=0.369 Sum_probs=38.9
Q ss_pred CcccccccccccCCcceeecCCCCCc-cCccchHHHhccCCCCccCCcccc
Q 035743 125 DAECVICLSEFASGELVRLLPKCNHG-FHVRCIDKWLRLHSSCPKCRHCLI 174 (216)
Q Consensus 125 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (216)
+.+|.||++...+. .+..+| |||. |+..|+..|.+.+..||+||+.+.
T Consensus 7 ~~~C~IC~~~~~~~-~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDG-NIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCE-EEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCCCcccCCcCCCe-EEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 46899999986542 122248 9998 999999999988889999999875
No 53
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.91 E-value=5.1e-10 Score=83.76 Aligned_cols=44 Identities=23% Similarity=0.520 Sum_probs=37.7
Q ss_pred CcccccccccccCCcceeec-CCCCCccCccchHHHhccCCCCccCCcccc
Q 035743 125 DAECVICLSEFASGELVRLL-PKCNHGFHVRCIDKWLRLHSSCPKCRHCLI 174 (216)
Q Consensus 125 ~~~C~ICl~~~~~~~~~~~l-p~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (216)
+..|+||++.|.+. ..+ + |||.||..||..|+. ..||+||..+.
T Consensus 22 ~~~C~IC~~~~~~p---v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILREP---VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSSC---BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred CCCCCCCChHhhCc---cEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 36899999999653 455 6 999999999999987 78999999874
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.89 E-value=3.4e-10 Score=87.78 Aligned_cols=48 Identities=21% Similarity=0.409 Sum_probs=40.1
Q ss_pred CCCcccccccccccCCcceeecCCCCCccCccchHHHhccCC-CCccCCcccc
Q 035743 123 GLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHS-SCPKCRHCLI 174 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~-~CP~CR~~l~ 174 (216)
+.+..|+||++.+.+. ..++ |||.||..||..|++.+. .||+||.++.
T Consensus 29 ~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred CcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 3457899999998764 4567 999999999999998665 8999999764
No 55
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.89 E-value=1.2e-09 Score=77.51 Aligned_cols=48 Identities=17% Similarity=0.044 Sum_probs=42.2
Q ss_pred CCcccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCccccc
Q 035743 124 LDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLIE 175 (216)
Q Consensus 124 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (216)
.+..|+||++-|.+ ..+++ |||.|+..||..|+..+.+||+||..+..
T Consensus 13 ~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDTLMTD---PVRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred hheECcccCchhcC---CeECC-CCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 45789999999987 45677 99999999999999988999999988764
No 56
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.84 E-value=7.2e-10 Score=76.49 Aligned_cols=42 Identities=24% Similarity=0.649 Sum_probs=36.6
Q ss_pred cccccccccccCCcceeecCCCCCc-cCccchHHHhccCCCCccCCccccc
Q 035743 126 AECVICLSEFASGELVRLLPKCNHG-FHVRCIDKWLRLHSSCPKCRHCLIE 175 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (216)
..|+||++.+.+ ...+| |||. |+..|+..| ..||+||..+..
T Consensus 25 ~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 25 KLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp TBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 689999998765 56778 9999 999999999 889999998764
No 57
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.84 E-value=1.3e-09 Score=79.78 Aligned_cols=48 Identities=17% Similarity=0.038 Sum_probs=42.0
Q ss_pred CCcccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCccccc
Q 035743 124 LDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLIE 175 (216)
Q Consensus 124 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (216)
.+..|+||++-|.+ ..+++ |||.|+..||..|+..+.+||+||..+..
T Consensus 28 ~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 28 DEFRDPLMDTLMTD---PVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp TTTBCTTTCSBCSS---EEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred HhhCCcCccCcccC---CeECC-CCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 45789999999977 45677 99999999999999988899999988763
No 58
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.83 E-value=2.5e-09 Score=77.93 Aligned_cols=48 Identities=17% Similarity=0.042 Sum_probs=41.8
Q ss_pred CCcccccccccccCCcceeecCCCC-CccCccchHHHhccCCCCccCCccccc
Q 035743 124 LDAECVICLSEFASGELVRLLPKCN-HGFHVRCIDKWLRLHSSCPKCRHCLIE 175 (216)
Q Consensus 124 ~~~~C~ICl~~~~~~~~~~~lp~C~-H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (216)
.+..|+||++-|.+ ..+++ || |.|+..||..|+..+.+||+||..+..
T Consensus 21 ~~~~CpI~~~~m~d---PV~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTLMCD---PVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred HhcCCcCccccccC---CeECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 45789999999977 45677 99 999999999999988899999998763
No 59
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.77 E-value=3.2e-09 Score=70.60 Aligned_cols=48 Identities=25% Similarity=0.625 Sum_probs=36.8
Q ss_pred CCCcccccccccccCCcceeecCCCC--C---ccCccchHHHhcc--CCCCccCCcccc
Q 035743 123 GLDAECVICLSEFASGELVRLLPKCN--H---GFHVRCIDKWLRL--HSSCPKCRHCLI 174 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~~~~~~lp~C~--H---~FH~~CI~~Wl~~--~~~CP~CR~~l~ 174 (216)
+....|.||+++. ++.+ ++| |. | .||..||+.|+.. +.+||+||+.+.
T Consensus 4 ~~~~~CrIC~~~~--~~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEEC--SCCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCC--CCce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 3457899999983 3334 577 65 4 9999999999964 568999998764
No 60
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=1.2e-08 Score=69.39 Aligned_cols=46 Identities=30% Similarity=0.746 Sum_probs=38.0
Q ss_pred CCCcccccccccccCCcceeecCCCCCc-cCccchHHHhccCCCCccCCccccch
Q 035743 123 GLDAECVICLSEFASGELVRLLPKCNHG-FHVRCIDKWLRLHSSCPKCRHCLIET 176 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (216)
..+.+|.||++...+ +..+| |||. |+..|+.. ...||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp CCSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred CCCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 445789999998654 67888 9999 99999984 47899999988754
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.69 E-value=5e-09 Score=83.09 Aligned_cols=49 Identities=35% Similarity=0.615 Sum_probs=40.9
Q ss_pred CCCcccccccccccCCcceeecCCCCCccCccchHHHhccC-CCCccCCccccc
Q 035743 123 GLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLH-SSCPKCRHCLIE 175 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~-~~CP~CR~~l~~ 175 (216)
..+..|+||++.+.+. ..++ |||.|+..||..|++.+ ..||+||..+..
T Consensus 16 ~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 16 ESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 3447899999998763 4577 99999999999999765 489999998865
No 62
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.67 E-value=6.9e-09 Score=74.57 Aligned_cols=48 Identities=25% Similarity=0.710 Sum_probs=40.0
Q ss_pred CCcccccccccccCCcceeecCCCCCccCccchHHHhcc--------CCCCcc--CCcc
Q 035743 124 LDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRL--------HSSCPK--CRHC 172 (216)
Q Consensus 124 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~--------~~~CP~--CR~~ 172 (216)
...+|+||++++...+.+.+.+ |||.|+.+|+..|+.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 3468999999998777676677 9999999999999853 236999 9988
No 63
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.65 E-value=1.6e-08 Score=85.26 Aligned_cols=48 Identities=15% Similarity=0.077 Sum_probs=40.5
Q ss_pred CCcccccccccccCCcceeecCCCCCccCccchHHHhccC-CCCccCCccccc
Q 035743 124 LDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLH-SSCPKCRHCLIE 175 (216)
Q Consensus 124 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~-~~CP~CR~~l~~ 175 (216)
....|+||++-|.+ ..+++ |||.|+..||..|+..+ .+||+||.++..
T Consensus 207 ~~~~c~i~~~~~~d---Pv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSS---EEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhcC---CeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 45789999999977 45677 99999999999999764 459999998853
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=1e-08 Score=70.73 Aligned_cols=42 Identities=24% Similarity=0.653 Sum_probs=35.0
Q ss_pred cccccccccccCCcceeecCCCCCc-cCccchHHHhccCCCCccCCccccc
Q 035743 126 AECVICLSEFASGELVRLLPKCNHG-FHVRCIDKWLRLHSSCPKCRHCLIE 175 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (216)
.+|+||++.+.+ ...+| |||. |+..|+.. ...||+||..+..
T Consensus 26 ~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 26 KLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence 579999998765 45678 9999 99999964 3789999998754
No 65
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.61 E-value=1.4e-08 Score=73.26 Aligned_cols=46 Identities=22% Similarity=0.452 Sum_probs=36.9
Q ss_pred CCcccccccccccCCcceeecCCCCCccCccchHHHhccC------CCCcc--CCcc
Q 035743 124 LDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLH------SSCPK--CRHC 172 (216)
Q Consensus 124 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~------~~CP~--CR~~ 172 (216)
.+..|+||++.|.+ ..+++.|||.|+..||..|+..+ .+||+ |+..
T Consensus 6 ~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 34789999999976 33453499999999999999764 48999 9855
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.53 E-value=2.5e-08 Score=69.70 Aligned_cols=43 Identities=28% Similarity=0.671 Sum_probs=36.9
Q ss_pred cccccccccccCCcceeecCCCCCc-cCccchHHHhccCCCCccCCccccch
Q 035743 126 AECVICLSEFASGELVRLLPKCNHG-FHVRCIDKWLRLHSSCPKCRHCLIET 176 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (216)
..|.||++.+.+ ...+| |||. |+..|+..| ..||+||..+...
T Consensus 19 ~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 19 MLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp TBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 589999998755 56788 9999 999999987 3999999988764
No 67
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.45 E-value=7.7e-08 Score=77.39 Aligned_cols=49 Identities=14% Similarity=0.055 Sum_probs=40.8
Q ss_pred CCCcccccccccccCCcceeecCCCCCccCccchHHHhccC-CCCccCCccccc
Q 035743 123 GLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLH-SSCPKCRHCLIE 175 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~-~~CP~CR~~l~~ 175 (216)
.....|+||++-|.+ ..+++ |||.|+..||..|+..+ .+||+||.++..
T Consensus 104 p~~f~CPI~~elm~D---PV~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCC---CeECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 345789999999986 45667 99999999999999764 579999988753
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.42 E-value=8.8e-08 Score=84.46 Aligned_cols=44 Identities=27% Similarity=0.693 Sum_probs=37.5
Q ss_pred CCcccccccccccCCcceeecCCCCCc-cCccchHHHhccCCCCccCCccccc
Q 035743 124 LDAECVICLSEFASGELVRLLPKCNHG-FHVRCIDKWLRLHSSCPKCRHCLIE 175 (216)
Q Consensus 124 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (216)
.+..|+||++.+.+ ...+| |||. ||..|+..| ..||+||..+..
T Consensus 294 ~~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 34689999999865 56678 9999 999999998 789999998754
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.30 E-value=2.2e-07 Score=61.76 Aligned_cols=47 Identities=15% Similarity=0.112 Sum_probs=40.0
Q ss_pred cccccccccccCCcceeec-CCCCCccCccchHHHhccCCCCccCCccccch
Q 035743 126 AECVICLSEFASGELVRLL-PKCNHGFHVRCIDKWLRLHSSCPKCRHCLIET 176 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~l-p~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (216)
..|+||++.+.+. + ++ + |||+|...||.+|++.+.+||+++.+|...
T Consensus 4 ~~CpIs~~~m~dP--V-~~~~-sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 4 MLCAISGKVPRRP--V-LSPK-SRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp CCCTTTCSCCSSE--E-EETT-TTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred EEecCCCCCCCCC--E-EeCC-CCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 5799999999853 3 45 5 999999999999999888899999888643
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.27 E-value=3.3e-07 Score=77.58 Aligned_cols=47 Identities=23% Similarity=0.528 Sum_probs=38.6
Q ss_pred CcccccccccccCCcceeecCCCCCccCccchHHHhccC--CCCcc--CCcccc
Q 035743 125 DAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLH--SSCPK--CRHCLI 174 (216)
Q Consensus 125 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~--~~CP~--CR~~l~ 174 (216)
+..|+||++.|.+ .++.+. |||.|+..||..|++.+ ..||+ ||..+.
T Consensus 181 el~CPIcl~~f~D--PVts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 181 ELTCPITCKPYEA--PLISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CSBCTTTSSBCSS--EEEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred eeECcCccCcccC--CeeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 4689999999965 355556 99999999999999764 46999 998764
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.12 E-value=1.2e-06 Score=63.45 Aligned_cols=46 Identities=24% Similarity=0.468 Sum_probs=37.4
Q ss_pred ccccccccccCCcceeecCCCCCccCccchHHHhc-cCCCCccCCccccc
Q 035743 127 ECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLR-LHSSCPKCRHCLIE 175 (216)
Q Consensus 127 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-~~~~CP~CR~~l~~ 175 (216)
-|.+|--.+ ....|++| |+|+|+.+|+..|.+ ..++||.|+.++..
T Consensus 3 fC~~C~~Pi--~iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPI--KVYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBC--SEEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCe--EEEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 478885554 44578999 999999999999985 46789999998763
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.00 E-value=3.6e-06 Score=70.48 Aligned_cols=49 Identities=24% Similarity=0.620 Sum_probs=39.8
Q ss_pred CCCcccccccccccCCcceeecCCCCCccCccchHHHhccCC--CCccCCcccc
Q 035743 123 GLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHS--SCPKCRHCLI 174 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~--~CP~CR~~l~ 174 (216)
+...+|.||.+-+..+ ..++.|+|.||..|+..|++.+. .||.|+....
T Consensus 178 ~~i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 178 DAVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp TTCCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCCCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 3467899999998875 34556999999999999998765 8999987643
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.61 E-value=0.0016 Score=46.44 Aligned_cols=47 Identities=23% Similarity=0.419 Sum_probs=37.2
Q ss_pred cccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCccccchh
Q 035743 126 AECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLIETC 177 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~~ 177 (216)
..|-.|+-+... +... .+|.++..|+..-|.....||+|+.+|..+-
T Consensus 29 ~nCKsCWf~~k~---LV~C--~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 29 QFCKSCWFENKG---LVEC--NNHYLCLNCLTLLLSVSNRCPICKMPLPTKL 75 (99)
T ss_dssp CCCCSSCSCCSS---EEEC--SSCEEEHHHHHHTCSSSSEETTTTEECCCCS
T ss_pred ccChhhccccCC---eeee--cchhhHHHHHHHHHhhccCCcccCCcCCcce
Confidence 579999966543 3222 4599999999999999999999999987443
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=96.41 E-value=0.0022 Score=42.90 Aligned_cols=46 Identities=24% Similarity=0.374 Sum_probs=34.9
Q ss_pred CCCcccccccccccCCcceeecCCCCCccCccchHHHhccCC----CCccCCcc
Q 035743 123 GLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHS----SCPKCRHC 172 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----~CP~CR~~ 172 (216)
..+..|.||.+. ..+.....|...||..|++..|.... .||.|+..
T Consensus 10 ~~~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 344679999743 34666777999999999999886654 59999654
No 75
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=93.93 E-value=0.02 Score=37.54 Aligned_cols=48 Identities=23% Similarity=0.515 Sum_probs=35.8
Q ss_pred CCcccccccccccCCcceeecCCCCCccCccchHHHhc-----cCCCCccCCc
Q 035743 124 LDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLR-----LHSSCPKCRH 171 (216)
Q Consensus 124 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-----~~~~CP~CR~ 171 (216)
+...|+||...+.++...+....|..-||..|+..-.. ..-.||.|+.
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 44679999988866565666667999999999976532 2346999964
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=93.77 E-value=0.051 Score=37.87 Aligned_cols=35 Identities=23% Similarity=0.490 Sum_probs=24.1
Q ss_pred CCCcccccccccccCCcceeecCCCCCccCccchHHH
Q 035743 123 GLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKW 159 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~W 159 (216)
..+..|.||- .+..++.. -..-|+-+||..|+.+-
T Consensus 13 ~~D~~C~VC~-~~t~~~l~-pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCE-VWTAESLF-PCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTC-CCCSSCCS-SCSSSSSCCCHHHHHHH
T ss_pred CCCcccCccc-ccccccee-ccccccccccHhhcccc
Confidence 3567899994 44444322 22238999999999996
No 77
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=93.70 E-value=0.043 Score=35.75 Aligned_cols=47 Identities=19% Similarity=0.457 Sum_probs=33.2
Q ss_pred CCCcccccccccccCCcceeecCCCCCccCccchHHHhccCC----CCccCCccc
Q 035743 123 GLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHS----SCPKCRHCL 173 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----~CP~CR~~l 173 (216)
..+..|.||.+. ..+.....|...||..|+..=+.... .||.|+...
T Consensus 7 ~~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC----SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC----CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 345779999752 34556666999999999997554432 599997543
No 78
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=93.64 E-value=0.049 Score=43.15 Aligned_cols=47 Identities=26% Similarity=0.470 Sum_probs=34.8
Q ss_pred CCcccccccccccCCcceeecCCCCCccCccchHHHhccCC----CCccCCcccc
Q 035743 124 LDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHS----SCPKCRHCLI 174 (216)
Q Consensus 124 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----~CP~CR~~l~ 174 (216)
.+..|.+|.+. + .+.....|...||..|+..-+.... .||.|+..-.
T Consensus 3 ~~~~C~~C~~~---g-~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNG---G-ELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCC---S-SCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCC---C-eeeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 45689999743 3 3666777999999999988775432 5999986543
No 79
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=93.51 E-value=0.035 Score=44.92 Aligned_cols=47 Identities=23% Similarity=0.392 Sum_probs=35.1
Q ss_pred CCCcccccccccccCCcceeecCCCCCccCccchHHHhccCC----CCccCCccc
Q 035743 123 GLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHS----SCPKCRHCL 173 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----~CP~CR~~l 173 (216)
..+..|.+|... ..+.....|...||..|+...+.... .||.|+..-
T Consensus 5 ~~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 345789999743 34667778999999999988775433 599998643
No 80
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.32 E-value=0.039 Score=39.12 Aligned_cols=35 Identities=14% Similarity=0.399 Sum_probs=25.5
Q ss_pred CcccccccccccCCcceeecCCCCCccCccchHH-Hh
Q 035743 125 DAECVICLSEFASGELVRLLPKCNHGFHVRCIDK-WL 160 (216)
Q Consensus 125 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~-Wl 160 (216)
+..|.||++++.......=+. |+|.|+..|+.. |.
T Consensus 3 e~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKATHP 38 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHHSC
T ss_pred CCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHHhc
Confidence 368999998754333333366 999999999998 53
No 81
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=92.61 E-value=0.074 Score=42.46 Aligned_cols=49 Identities=18% Similarity=0.430 Sum_probs=37.1
Q ss_pred cccccccccccCCcc---eeecCCCCCccCccchHHH------hc-----cCCCCccCCcccc
Q 035743 126 AECVICLSEFASGEL---VRLLPKCNHGFHVRCIDKW------LR-----LHSSCPKCRHCLI 174 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~---~~~lp~C~H~FH~~CI~~W------l~-----~~~~CP~CR~~l~ 174 (216)
..|+||...+.+++. .+....|..-||..|+.-= +. ..-.||.|+..-.
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 469999999988763 6777789999999998642 11 1568999987544
No 82
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=92.55 E-value=0.073 Score=34.66 Aligned_cols=45 Identities=24% Similarity=0.623 Sum_probs=33.0
Q ss_pred CCCcccccccccccCCcceeecCCCCCccCccchHHHhccC----CCCccCCc
Q 035743 123 GLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLH----SSCPKCRH 171 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~----~~CP~CR~ 171 (216)
..+..|.||... ..+.....|...||..|+..=+... -.||.|+.
T Consensus 9 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 345789999863 3466666799999999999865432 25999964
No 83
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=92.40 E-value=0.027 Score=36.53 Aligned_cols=47 Identities=23% Similarity=0.716 Sum_probs=33.6
Q ss_pred CCcccccccccccCCcceeecCCCCCccCccchHHHhccCC----CCccCCcccc
Q 035743 124 LDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHS----SCPKCRHCLI 174 (216)
Q Consensus 124 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----~CP~CR~~l~ 174 (216)
.+..|.||... + .+.....|...||..|+..=+.... .||.|+....
T Consensus 4 ~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 4 HEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCSSCTTTCCC---S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCcCCCCC---C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 35689999863 3 4556667999999999997554322 5999965544
No 84
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.02 E-value=0.052 Score=34.64 Aligned_cols=45 Identities=27% Similarity=0.773 Sum_probs=32.1
Q ss_pred CCCcccccccccccCCcceeecCCCCCccCccchHHHhccCC----CCccCCc
Q 035743 123 GLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHS----SCPKCRH 171 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----~CP~CR~ 171 (216)
+.+..|.||... + .+.....|...||..|+..=+.... .||.|+.
T Consensus 7 ~~~~~C~vC~~~---g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 445789999864 2 4556667999999999997654332 4888853
No 85
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=90.95 E-value=0.078 Score=35.02 Aligned_cols=45 Identities=24% Similarity=0.579 Sum_probs=32.5
Q ss_pred CCCcccccccccccCCcceeecCCCCCccCccchHHHhccCC----CCccCCc
Q 035743 123 GLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHS----SCPKCRH 171 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----~CP~CR~ 171 (216)
..+..|.||.+. ..+.....|...||..|+..=+.... .||.|+.
T Consensus 6 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDG----GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCC----SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCC----CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 455789999853 34566667999999999996554322 5999953
No 86
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=90.63 E-value=0.13 Score=37.46 Aligned_cols=45 Identities=27% Similarity=0.619 Sum_probs=32.8
Q ss_pred ccccccccccCCcceeecCCCCCccCccchHHHhccCC----CCccCCc
Q 035743 127 ECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHS----SCPKCRH 171 (216)
Q Consensus 127 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----~CP~CR~ 171 (216)
.|.||.+.-.+++.+.....|...||..|++.=|.... .||.||.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 68888865334455667777999999999987664432 5999974
No 87
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=90.04 E-value=0.074 Score=35.86 Aligned_cols=49 Identities=20% Similarity=0.341 Sum_probs=35.0
Q ss_pred CCcccccccccccCCcceeecCCCCCccCccchHHHhcc----CCCCccCCccc
Q 035743 124 LDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRL----HSSCPKCRHCL 173 (216)
Q Consensus 124 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~----~~~CP~CR~~l 173 (216)
....|.||.... +++.......|...||..|+..-... .-.||.|+..+
T Consensus 17 ~~~~C~~C~~~~-~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 17 QIWICPGCNKPD-DGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp EEECBTTTTBCC-SSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCcCCCCCCCCC-CCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 345799998764 34456667779999999999876532 33599997544
No 88
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=89.69 E-value=0.29 Score=34.38 Aligned_cols=46 Identities=24% Similarity=0.496 Sum_probs=33.9
Q ss_pred CCCcccccccccccCCcceeecCCCCCccCccchHHHhccCC----CCccCCcc
Q 035743 123 GLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHS----SCPKCRHC 172 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----~CP~CR~~ 172 (216)
+.+..|.+|... + .+.....|.-.||..|++.=+.... .||.|+..
T Consensus 23 ~n~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 455789999864 3 4556667999999999987664433 59999754
No 89
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=88.67 E-value=0.26 Score=30.82 Aligned_cols=44 Identities=16% Similarity=0.229 Sum_probs=31.7
Q ss_pred ccccccccccCCcceeecC-CCCCccCccchHHHh----ccCCCCccCC
Q 035743 127 ECVICLSEFASGELVRLLP-KCNHGFHVRCIDKWL----RLHSSCPKCR 170 (216)
Q Consensus 127 ~C~ICl~~~~~~~~~~~lp-~C~H~FH~~CI~~Wl----~~~~~CP~CR 170 (216)
.|.+|...+.+++..+... .|..-||..|+.--. ..+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4778988886666666666 699999999987532 2455799885
No 90
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=88.48 E-value=0.22 Score=39.68 Aligned_cols=44 Identities=25% Similarity=0.506 Sum_probs=31.7
Q ss_pred CcccccccccccCCcceeecCCCCCccCccchHHHhccC----CCCccCCcc
Q 035743 125 DAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLH----SSCPKCRHC 172 (216)
Q Consensus 125 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~----~~CP~CR~~ 172 (216)
+..|.+|.+. + .+.....|...||..|+..=+... -.||.|+..
T Consensus 2 ~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---S-SCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---C-ceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 3679999854 3 355566789999999997655432 259999865
No 91
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=88.29 E-value=0.3 Score=31.86 Aligned_cols=49 Identities=24% Similarity=0.627 Sum_probs=35.1
Q ss_pred CCCccccccccccc-CCcceeecCCCCCccCccchHHHhcc-------CCCCccCCc
Q 035743 123 GLDAECVICLSEFA-SGELVRLLPKCNHGFHVRCIDKWLRL-------HSSCPKCRH 171 (216)
Q Consensus 123 ~~~~~C~ICl~~~~-~~~~~~~lp~C~H~FH~~CI~~Wl~~-------~~~CP~CR~ 171 (216)
+.+..|.||..... ++..+.....|...||..|+..=+.. .-.||.|+.
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~ 60 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVF 60 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcC
Confidence 45578999997643 34566677789999999999875432 225888854
No 92
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=88.18 E-value=0.35 Score=34.94 Aligned_cols=48 Identities=23% Similarity=0.456 Sum_probs=32.7
Q ss_pred CCCcccccccccccCCcceeecCCCCCccCccchHHHhcc----CCCCccCCc
Q 035743 123 GLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRL----HSSCPKCRH 171 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~----~~~CP~CR~ 171 (216)
.++..|.||.+.-+. +.+.....|+..||..|++..+.. .-.||.|+.
T Consensus 5 ~~~~~C~~C~~~g~~-~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~~ 56 (111)
T 2ysm_A 5 SSGANCAVCDSPGDL-LDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKV 56 (111)
T ss_dssp CCCSCBTTTCCCCCT-TTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTCC
T ss_pred CCCCCCcCCCCCCCC-cCCeECCCCCCCcChHHhCCccccccccCccCCcCCc
Confidence 355789999876322 233455669999999999988642 224777653
No 93
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=87.50 E-value=0.33 Score=30.03 Aligned_cols=44 Identities=27% Similarity=0.668 Sum_probs=30.6
Q ss_pred ccccccccccCCcceeecCCCCCccCccchHHHhccCC----CCccCCc
Q 035743 127 ECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHS----SCPKCRH 171 (216)
Q Consensus 127 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----~CP~CR~ 171 (216)
.|.||...-. ++.+.....|...||..|++.=+.... .||.|+.
T Consensus 2 ~C~vC~~~~~-~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGE-DDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSC-CSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCC-CCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 4888976533 334566667999999999976443322 4999964
No 94
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=87.35 E-value=0.21 Score=34.90 Aligned_cols=49 Identities=22% Similarity=0.436 Sum_probs=34.1
Q ss_pred CCCcccccccccc-cCCcceeecCCCCCccCccchHHHhc--cCCCCccCCc
Q 035743 123 GLDAECVICLSEF-ASGELVRLLPKCNHGFHVRCIDKWLR--LHSSCPKCRH 171 (216)
Q Consensus 123 ~~~~~C~ICl~~~-~~~~~~~~lp~C~H~FH~~CI~~Wl~--~~~~CP~CR~ 171 (216)
+.+..|.||...- .+.+.+.....|.-.||..|+..=+. ..-.||.|+.
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~ 74 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 74 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccC
Confidence 4557899998653 34446777778999999999986431 1225888854
No 95
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=87.25 E-value=0.45 Score=32.34 Aligned_cols=48 Identities=19% Similarity=0.461 Sum_probs=33.8
Q ss_pred CcccccccccccCCcceeecCCCCCccCccchHHHhc-----cCCCCccCCccc
Q 035743 125 DAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLR-----LHSSCPKCRHCL 173 (216)
Q Consensus 125 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-----~~~~CP~CR~~l 173 (216)
...| ||...+..+...+....|..-||..|+..-.. ..-.||.|+...
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 3567 99888764555666667999999999864321 234699998654
No 96
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.08 E-value=0.2 Score=35.36 Aligned_cols=49 Identities=20% Similarity=0.432 Sum_probs=34.3
Q ss_pred CCcccccccccccCCcceeecCCCCCccCccchHHHhccCC----CCccCCccc
Q 035743 124 LDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHS----SCPKCRHCL 173 (216)
Q Consensus 124 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----~CP~CR~~l 173 (216)
++..|.||...-. .+.+.....|...||..|+..=|.... .||.|+..-
T Consensus 15 ~~~~C~vC~~~~~-~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~ 67 (92)
T 2e6r_A 15 DSYICQVCSRGDE-DDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAE 67 (92)
T ss_dssp CCCCCSSSCCSGG-GGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHHH
T ss_pred CCCCCccCCCcCC-CCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCcc
Confidence 3467999987643 345667777999999999985443322 499996543
No 97
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=86.43 E-value=0.36 Score=31.82 Aligned_cols=35 Identities=26% Similarity=0.419 Sum_probs=28.3
Q ss_pred CCcccccccccccCCcceeecC-CCCCccCccchHH
Q 035743 124 LDAECVICLSEFASGELVRLLP-KCNHGFHVRCIDK 158 (216)
Q Consensus 124 ~~~~C~ICl~~~~~~~~~~~lp-~C~H~FH~~CI~~ 158 (216)
....|.+|...+.+++..+... .|.--||..|+.-
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvgl 42 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGM 42 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTC
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccCC
Confidence 3467999999988877777777 7999999999854
No 98
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=85.61 E-value=0.19 Score=33.68 Aligned_cols=46 Identities=24% Similarity=0.415 Sum_probs=32.4
Q ss_pred CcccccccccccCCcceeecCCCCCccCccchHHHh----ccCCCCccCCc
Q 035743 125 DAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWL----RLHSSCPKCRH 171 (216)
Q Consensus 125 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl----~~~~~CP~CR~ 171 (216)
...| ||.....+++..+....|..-||..|+..-- ..+-.||.|+.
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 3568 7987765555566666799999999987542 22346999964
No 99
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=85.07 E-value=0.24 Score=34.59 Aligned_cols=49 Identities=18% Similarity=0.466 Sum_probs=35.2
Q ss_pred CcccccccccccC-CcceeecCCCCCccCccchHHHhcc--------CCCCccCCccc
Q 035743 125 DAECVICLSEFAS-GELVRLLPKCNHGFHVRCIDKWLRL--------HSSCPKCRHCL 173 (216)
Q Consensus 125 ~~~C~ICl~~~~~-~~~~~~lp~C~H~FH~~CI~~Wl~~--------~~~CP~CR~~l 173 (216)
+..|.||...-.. +..+.....|...||..|+..=|.. .-.|+.|+...
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 4679999876332 3467777789999999999986642 12599996543
No 100
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=84.44 E-value=0.18 Score=39.27 Aligned_cols=47 Identities=21% Similarity=0.498 Sum_probs=34.0
Q ss_pred CCcccccccccccCCcceeecCCCCCccCccchHHHh-----ccCCCCccCCc
Q 035743 124 LDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWL-----RLHSSCPKCRH 171 (216)
Q Consensus 124 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl-----~~~~~CP~CR~ 171 (216)
....| +|......+........|...||..|+..-. ...-.||.|+.
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 44679 9988765555566777799999999996432 12446999975
No 101
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=84.33 E-value=0.49 Score=34.47 Aligned_cols=46 Identities=22% Similarity=0.441 Sum_probs=31.0
Q ss_pred ccccccccccc------CCcceeecCCCCCccCccchHHHhc------c-CCCCccCCc
Q 035743 126 AECVICLSEFA------SGELVRLLPKCNHGFHVRCIDKWLR------L-HSSCPKCRH 171 (216)
Q Consensus 126 ~~C~ICl~~~~------~~~~~~~lp~C~H~FH~~CI~~Wl~------~-~~~CP~CR~ 171 (216)
..|.+|+..-. +++++.....|+..||..|++.+.. . .=.||.|+.
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~ 60 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKS 60 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccCc
Confidence 46999987542 2345666667999999999987632 1 235777643
No 102
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=84.11 E-value=0.46 Score=32.38 Aligned_cols=44 Identities=27% Similarity=0.667 Sum_probs=29.5
Q ss_pred ccccccccccCCcceeecCCCCCccCccchHHHhccC-----CCCccCCc
Q 035743 127 ECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLH-----SSCPKCRH 171 (216)
Q Consensus 127 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~-----~~CP~CR~ 171 (216)
.|.||...- +.+.+.....|...||..|++.-|... =.||.|+.
T Consensus 28 ~C~vC~~~~-d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCC-CCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 466665442 334566666799999999999766432 25999975
No 103
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=83.99 E-value=0.89 Score=32.24 Aligned_cols=46 Identities=22% Similarity=0.429 Sum_probs=31.5
Q ss_pred CcccccccccccCCcceeecCCCCCccCccchHHHhcc---CCCCccCCcc
Q 035743 125 DAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRL---HSSCPKCRHC 172 (216)
Q Consensus 125 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~---~~~CP~CR~~ 172 (216)
...| ||-.....+ .++....|.-.||..|+..=+.. .-.||.|+..
T Consensus 28 ~vrC-iC~~~~~~~-~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 28 VTRC-ICGFTHDDG-YMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp BCCC-TTSCCSCSS-CEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CEEe-ECCCccCCC-cEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 3568 887665444 45566779999999999763322 2369999743
No 104
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.72 E-value=0.57 Score=31.90 Aligned_cols=45 Identities=24% Similarity=0.651 Sum_probs=31.2
Q ss_pred cccccccccccCCcceeecCCCCCccCccchHHHhcc-----CCCCccCCc
Q 035743 126 AECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRL-----HSSCPKCRH 171 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-----~~~CP~CR~ 171 (216)
..|.||...- ++..+.....|...||..|++.=|.. .=.||.|+.
T Consensus 27 c~C~vC~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKH-EPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCC-CSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcC-CCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 3688997542 33456667779999999999964432 225999865
No 105
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=82.17 E-value=1.3 Score=32.04 Aligned_cols=45 Identities=20% Similarity=0.479 Sum_probs=29.9
Q ss_pred CCCcccccccccccCCcceeecC--CCCCccCccchHHHhccCC----CCccCCccc
Q 035743 123 GLDAECVICLSEFASGELVRLLP--KCNHGFHVRCIDKWLRLHS----SCPKCRHCL 173 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~~~~~~lp--~C~H~FH~~CI~~Wl~~~~----~CP~CR~~l 173 (216)
..+..|.+|.+ +.++.... .|...||..|+. |.... .||.|+-.+
T Consensus 13 ~~~~~C~~C~~----~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~ 63 (107)
T 4gne_A 13 MHEDYCFQCGD----GGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDE 63 (107)
T ss_dssp SSCSSCTTTCC----CSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTT
T ss_pred CCCCCCCcCCC----CCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCc
Confidence 45578999983 23355554 488999999998 54432 488775433
No 106
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=81.65 E-value=1.4 Score=31.83 Aligned_cols=47 Identities=21% Similarity=0.453 Sum_probs=31.8
Q ss_pred Ccccccccccc-----cCCcceeecCCCCCccCccchHHH------hc-cCCCCccCCc
Q 035743 125 DAECVICLSEF-----ASGELVRLLPKCNHGFHVRCIDKW------LR-LHSSCPKCRH 171 (216)
Q Consensus 125 ~~~C~ICl~~~-----~~~~~~~~lp~C~H~FH~~CI~~W------l~-~~~~CP~CR~ 171 (216)
...|.+|+..- ..++++.....|+..||..|+..+ +. ..=.||.|+.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~ 63 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKT 63 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCCc
Confidence 36799998763 223466677779999999999643 22 2235777763
No 107
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=81.65 E-value=0.8 Score=30.46 Aligned_cols=44 Identities=27% Similarity=0.685 Sum_probs=29.5
Q ss_pred ccccccccccCCcceeecCCCCCccCccchHHHhcc-----CCCCccCCc
Q 035743 127 ECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRL-----HSSCPKCRH 171 (216)
Q Consensus 127 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-----~~~CP~CR~ 171 (216)
.|.||...- ++..+.....|...||..|++.=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcC-CCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 466776432 23456666679999999999965433 225999974
No 108
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=81.58 E-value=1.7 Score=28.93 Aligned_cols=44 Identities=25% Similarity=0.554 Sum_probs=28.4
Q ss_pred CCcccccccccccCCcceeecCC--CC-CccCccchHHHhccC----CCCccCCcc
Q 035743 124 LDAECVICLSEFASGELVRLLPK--CN-HGFHVRCIDKWLRLH----SSCPKCRHC 172 (216)
Q Consensus 124 ~~~~C~ICl~~~~~~~~~~~lp~--C~-H~FH~~CI~~Wl~~~----~~CP~CR~~ 172 (216)
+...| ||-.... + ..+.... |. ..||..|+. |... -.||.|+..
T Consensus 15 ~~~~C-~C~~~~~-g-~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 15 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp SCCCS-TTCCCSC-S-SEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCEE-ECCCCCC-C-CEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 44678 8977532 3 3444555 55 689999998 4332 359999753
No 109
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=81.53 E-value=1 Score=32.42 Aligned_cols=47 Identities=23% Similarity=0.382 Sum_probs=34.9
Q ss_pred cccccccccccCCcceeecC-CCCCccCccchHHHhc----------cCCCCccCCcc
Q 035743 126 AECVICLSEFASGELVRLLP-KCNHGFHVRCIDKWLR----------LHSSCPKCRHC 172 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp-~C~H~FH~~CI~~Wl~----------~~~~CP~CR~~ 172 (216)
..|.||...+.++...+..- .|..-||..|+.-=-. .+-.||.|+..
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCc
Confidence 57999999987766666665 6999999999864310 23469999754
No 110
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=80.27 E-value=1.8 Score=30.38 Aligned_cols=44 Identities=25% Similarity=0.554 Sum_probs=28.0
Q ss_pred CCcccccccccccCCcceeecCC--CC-CccCccchHHHhcc----CCCCccCCcc
Q 035743 124 LDAECVICLSEFASGELVRLLPK--CN-HGFHVRCIDKWLRL----HSSCPKCRHC 172 (216)
Q Consensus 124 ~~~~C~ICl~~~~~~~~~~~lp~--C~-H~FH~~CI~~Wl~~----~~~CP~CR~~ 172 (216)
....| ||..... + ..+.... |. .-||..|+. |.. +-.||.|+..
T Consensus 35 e~~yC-iC~~~~~-g-~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 35 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCBCS-TTCCBCC-S-CCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCcEE-ECCCCCC-C-CEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 44667 9987542 3 3444444 54 689999998 433 2369999753
No 111
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=79.57 E-value=0.54 Score=31.59 Aligned_cols=45 Identities=22% Similarity=0.504 Sum_probs=31.1
Q ss_pred CcccccccccccCCcceeecCCCCCccCccchHHHh---------ccCCCCccCCc
Q 035743 125 DAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWL---------RLHSSCPKCRH 171 (216)
Q Consensus 125 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl---------~~~~~CP~CR~ 171 (216)
...| ||...... ...+....|..-||..|+..-. ..+-.||.|+.
T Consensus 16 ~~~C-~C~~~~~~-~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 16 ALYC-ICRQPHNN-RFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp CCCS-TTCCCCCS-SCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred CCEE-ECCCccCC-CCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcC
Confidence 3567 89877653 3455566699999999986432 23567999964
No 112
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=79.09 E-value=0.85 Score=30.17 Aligned_cols=46 Identities=26% Similarity=0.522 Sum_probs=31.3
Q ss_pred CCcccccccccccCCcceeecCCCCCccCccchHHHhc---cCCCCccCCc
Q 035743 124 LDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLR---LHSSCPKCRH 171 (216)
Q Consensus 124 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~---~~~~CP~CR~ 171 (216)
+...| ||-.... ++..+....|..-||..|+..--. ..-.||.|+.
T Consensus 18 ~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 34678 9987654 444556667999999999975321 2346988864
No 113
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=77.95 E-value=1.5 Score=29.19 Aligned_cols=49 Identities=22% Similarity=0.436 Sum_probs=33.9
Q ss_pred CCCcccccccccc-cCCcceeecCCCCCccCccchHHHhc--cCCCCccCCc
Q 035743 123 GLDAECVICLSEF-ASGELVRLLPKCNHGFHVRCIDKWLR--LHSSCPKCRH 171 (216)
Q Consensus 123 ~~~~~C~ICl~~~-~~~~~~~~lp~C~H~FH~~CI~~Wl~--~~~~CP~CR~ 171 (216)
..+..|.||.+.- .+++.+.....|.-.||..|+..=.. ..=.||.|+.
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 3457899998653 34456777778999999999985321 1125888853
No 114
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=76.51 E-value=1.1 Score=36.71 Aligned_cols=44 Identities=27% Similarity=0.667 Sum_probs=26.9
Q ss_pred ccccccccccCCcceeecCCCCCccCccchHHHhccC-----CCCccCCc
Q 035743 127 ECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLH-----SSCPKCRH 171 (216)
Q Consensus 127 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~-----~~CP~CR~ 171 (216)
.|.+|...- ++..+.....|...||..|++.=|... =.||.|+.
T Consensus 176 ~C~vC~~~~-~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCC-C--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCC-CCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 577786532 234555677799999999999654332 25999964
No 115
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=75.94 E-value=0.25 Score=34.64 Aligned_cols=48 Identities=19% Similarity=0.440 Sum_probs=33.3
Q ss_pred cccccccccccCCcceeecCCCCCccCccchHHHhcc------CCCCccCCccc
Q 035743 126 AECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRL------HSSCPKCRHCL 173 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~------~~~CP~CR~~l 173 (216)
..|.+|...|.--..-.....||++|+..|...+... ...|-.|-..|
T Consensus 21 ~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 74 (90)
T 3t7l_A 21 PNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETI 74 (90)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHH
T ss_pred CcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHH
Confidence 5799999999754433445569999999999887522 22466664433
No 116
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=75.55 E-value=6.8 Score=24.74 Aligned_cols=28 Identities=11% Similarity=0.035 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035743 50 SSVLLVLSVLLCALICSLGLNFLIRYIL 77 (216)
Q Consensus 50 ~~viiii~ill~~li~~l~l~~i~r~~~ 77 (216)
+..+++++++..++++++.+..+.+|-.
T Consensus 11 p~wiIi~svl~GLllL~li~~~LwK~GF 38 (54)
T 2knc_A 11 PIWWVLVGVLGGLLLLTILVLAMWKVGF 38 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 4556666666666666666666665554
No 117
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=74.85 E-value=3.6 Score=26.84 Aligned_cols=42 Identities=26% Similarity=0.508 Sum_probs=29.1
Q ss_pred CCcccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCccccc
Q 035743 124 LDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLIE 175 (216)
Q Consensus 124 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (216)
....|+-|-..+..++.+... -+..||.+|+. |-.|+..|..
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF~--------C~~C~~~L~~ 51 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQCFV--------CAQCFQQFPE 51 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE--TTEEECTTTCC--------CTTTCCCCGG
T ss_pred CCCCchhcCCccCCCceEEEe--CccEeccccCe--------ECCCCCCCCC
Confidence 346899999998765544322 57899998853 6667766654
No 118
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=74.33 E-value=3.2 Score=31.53 Aligned_cols=47 Identities=26% Similarity=0.501 Sum_probs=33.7
Q ss_pred CCCCcccccccccccCCcceeecCCCCCccCccchHHHhc-----------cCCCCccCCcc
Q 035743 122 PGLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLR-----------LHSSCPKCRHC 172 (216)
Q Consensus 122 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-----------~~~~CP~CR~~ 172 (216)
.+.+..|.+|-+- + ++.....|-.+||..||+.=+. ..-.||.|+..
T Consensus 60 Dg~~d~C~vC~~G---G-~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---G-NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TSCBCSCSSSCCC---S-SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCeecccCCC---C-cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 3456889999753 3 3555566999999999997653 12269999854
No 119
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=72.93 E-value=3 Score=28.32 Aligned_cols=35 Identities=26% Similarity=0.465 Sum_probs=26.9
Q ss_pred cccccccccccCCcceeecCCCCCccCccchHHHh
Q 035743 126 AECVICLSEFASGELVRLLPKCNHGFHVRCIDKWL 160 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl 160 (216)
..|.+|...|.--..-.....||++|+..|....+
T Consensus 20 ~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~ 54 (82)
T 2yw8_A 20 THCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNEL 54 (82)
T ss_dssp CBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEE
T ss_pred CcccCcCCcccCccccccCCCCCCEEChHHhCCee
Confidence 58999999997544334455699999999987653
No 120
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=72.63 E-value=0.93 Score=33.56 Aligned_cols=46 Identities=20% Similarity=0.418 Sum_probs=31.7
Q ss_pred cccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCc
Q 035743 126 AECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRH 171 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~ 171 (216)
..|..|-..|..-..-.....||.+|+..|..........|-.|..
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 5899999999754333455579999999998877655556777743
No 121
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=72.45 E-value=4.1 Score=30.42 Aligned_cols=49 Identities=22% Similarity=0.478 Sum_probs=33.8
Q ss_pred CCCCcccccccccccCCcceeecCCCCCccCccchHHHh------cc-----CCCCccCCcccc
Q 035743 122 PGLDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWL------RL-----HSSCPKCRHCLI 174 (216)
Q Consensus 122 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl------~~-----~~~CP~CR~~l~ 174 (216)
.+.+..|.||-+- -++.....|-..||..||..-+ +. .=.|++|+-.-.
T Consensus 54 Dg~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~pl 113 (129)
T 3ql9_A 54 DGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPEPL 113 (129)
T ss_dssp TSCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGGG
T ss_pred CCCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCHHH
Confidence 3456789999853 3355556688999999999752 11 126999976543
No 122
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=72.02 E-value=1.4 Score=28.27 Aligned_cols=43 Identities=28% Similarity=0.600 Sum_probs=27.7
Q ss_pred CCcccccccccccCCcceeecCC--CC-CccCccchHHHhccC----CCCccCCc
Q 035743 124 LDAECVICLSEFASGELVRLLPK--CN-HGFHVRCIDKWLRLH----SSCPKCRH 171 (216)
Q Consensus 124 ~~~~C~ICl~~~~~~~~~~~lp~--C~-H~FH~~CI~~Wl~~~----~~CP~CR~ 171 (216)
+...| ||-... .+ ....... |. .-||..|+. |... -.||.|+.
T Consensus 8 e~~yC-~C~~~~-~g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVS-YG-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCC-CC-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 33567 897754 23 3555555 55 699999998 4332 25999864
No 123
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=71.74 E-value=3.2 Score=28.31 Aligned_cols=35 Identities=14% Similarity=0.202 Sum_probs=27.0
Q ss_pred CcccccccccccCCcceeecCCCCCccCccchHHH
Q 035743 125 DAECVICLSEFASGELVRLLPKCNHGFHVRCIDKW 159 (216)
Q Consensus 125 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~W 159 (216)
...|.+|...|.--..-.....||++|+..|....
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 36899999999764433445569999999998775
No 124
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=71.07 E-value=3.8 Score=28.36 Aligned_cols=37 Identities=16% Similarity=0.325 Sum_probs=27.9
Q ss_pred CCcccccccccccCCcceeecCCCCCccCccchHHHh
Q 035743 124 LDAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWL 160 (216)
Q Consensus 124 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl 160 (216)
+...|.+|...|..-..-.-...||++|+..|....+
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~ 44 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSA 44 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCce
Confidence 3468999999997644334455699999999987753
No 125
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=70.93 E-value=3.3 Score=27.45 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=25.8
Q ss_pred cccccccccccCCcceeecCCCCCccCccchHHH
Q 035743 126 AECVICLSEFASGELVRLLPKCNHGFHVRCIDKW 159 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~W 159 (216)
..|.+|...|.--..-.....||++|+..|....
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 5899999999754333445569999999997654
No 126
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=69.72 E-value=1.2 Score=29.79 Aligned_cols=46 Identities=20% Similarity=0.477 Sum_probs=31.6
Q ss_pred cccccccccccCCcceeecCCCCCccCccchHHHhc-----cCCCCccCCcc
Q 035743 126 AECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLR-----LHSSCPKCRHC 172 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-----~~~~CP~CR~~ 172 (216)
..| ||-..+..+...+....|.--||..|+..--. ..-.||.|+..
T Consensus 11 ~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 11 VYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp EET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred eEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 445 88876654555666667999999999965421 23469999643
No 127
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=68.63 E-value=3.3 Score=30.61 Aligned_cols=34 Identities=21% Similarity=0.402 Sum_probs=26.2
Q ss_pred cccccccccccCCcceeecCCCCCccCccchHHH
Q 035743 126 AECVICLSEFASGELVRLLPKCNHGFHVRCIDKW 159 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~W 159 (216)
..|.+|...|..-..-.....||++|+..|....
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 5899999999754333445569999999997765
No 128
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=68.55 E-value=1.7 Score=27.87 Aligned_cols=43 Identities=26% Similarity=0.593 Sum_probs=27.0
Q ss_pred CCcccccccccccCCcceeecCC--CC-CccCccchHHHhccC----CCCccCCc
Q 035743 124 LDAECVICLSEFASGELVRLLPK--CN-HGFHVRCIDKWLRLH----SSCPKCRH 171 (216)
Q Consensus 124 ~~~~C~ICl~~~~~~~~~~~lp~--C~-H~FH~~CI~~Wl~~~----~~CP~CR~ 171 (216)
+...| ||.... .+ ....... |. ..||..|+. |... -.||.|+.
T Consensus 9 e~~~C-~C~~~~-~g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVS-YG-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcC-CC-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34567 897753 23 3445555 44 689999998 4332 25998854
No 129
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=68.54 E-value=11 Score=23.83 Aligned_cols=28 Identities=18% Similarity=0.106 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035743 50 SSVLLVLSVLLCALICSLGLNFLIRYIL 77 (216)
Q Consensus 50 ~~viiii~ill~~li~~l~l~~i~r~~~ 77 (216)
+..+++++++..+++.++.+..+.+|-.
T Consensus 8 p~WiIi~svl~GLLLL~Lii~~LwK~GF 35 (54)
T 2l8s_A 8 PLWVILLSAFAGLLLLMLLILALWKIGF 35 (54)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 3556666666666666666666665554
No 130
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.41 E-value=4 Score=27.83 Aligned_cols=34 Identities=24% Similarity=0.471 Sum_probs=25.3
Q ss_pred cccccccccccCCcceeecCCCCCccCccchHHH
Q 035743 126 AECVICLSEFASGELVRLLPKCNHGFHVRCIDKW 159 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~W 159 (216)
..|.+|..+|..-..-.-...||.+|+..|....
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 6899999999654333344469999999997654
No 131
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=68.28 E-value=3.1 Score=33.46 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=27.5
Q ss_pred CcccccccccccCCcceeecCCCCCccCccchHHHh
Q 035743 125 DAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWL 160 (216)
Q Consensus 125 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl 160 (216)
+..|.+|...|.--..-.....||++|+..|.....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~~ 196 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQC 196 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCee
Confidence 478999999997544334555699999999987653
No 132
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=68.17 E-value=4 Score=26.01 Aligned_cols=41 Identities=27% Similarity=0.532 Sum_probs=30.2
Q ss_pred cccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCccccch
Q 035743 126 AECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLIET 176 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (216)
..|+-|-..+..++.+... -+..||.+|+ .|-.|...|...
T Consensus 12 ~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 12 ATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp CBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGGG
T ss_pred ccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCCC
Confidence 6899999998876654332 5788999886 477787777644
No 133
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=67.02 E-value=3.5 Score=40.59 Aligned_cols=49 Identities=16% Similarity=0.036 Sum_probs=40.9
Q ss_pred CCCcccccccccccCCcceeecCCCC-CccCccchHHHhccCCCCccCCccccc
Q 035743 123 GLDAECVICLSEFASGELVRLLPKCN-HGFHVRCIDKWLRLHSSCPKCRHCLIE 175 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~~~~~~lp~C~-H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (216)
..+..|+|-++-+.+ ..++| -| +.|-..+|..||..+.+||.=|.+|..
T Consensus 889 P~~F~cPIs~~lM~D---PVilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 889 PDEFLDPLMYTIMKD---PVILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp CGGGBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred cHHhCCcchhhHHhC---CeEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 345789999999877 45677 76 689999999999999999999988763
No 134
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.50 E-value=7.2 Score=24.93 Aligned_cols=40 Identities=20% Similarity=0.439 Sum_probs=27.8
Q ss_pred cccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCccccc
Q 035743 126 AECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLIE 175 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (216)
..|+.|-..+..++.+... -+..||.+|+ .|-.|+..|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLEY--GGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp CBCSSSCCBCCSSSCEECS--TTCCEETTTC--------BCTTTCCBTTT
T ss_pred CCCccCCCccccCccEEEE--CccccCcccC--------eECCCCCcCCC
Confidence 5799999998865433322 6789999885 46677666653
No 135
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=65.48 E-value=3.8 Score=33.29 Aligned_cols=36 Identities=22% Similarity=0.412 Sum_probs=27.7
Q ss_pred CcccccccccccCCcceeecCCCCCccCccchHHHh
Q 035743 125 DAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWL 160 (216)
Q Consensus 125 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl 160 (216)
+..|.+|...|.--..-.....||++|+..|-..+.
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~ 199 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYS 199 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcc
Confidence 468999999997544334556799999999987663
No 136
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=65.42 E-value=8.1 Score=23.32 Aligned_cols=8 Identities=0% Similarity=-0.023 Sum_probs=3.1
Q ss_pred HHHHHHHh
Q 035743 72 LIRYILIK 79 (216)
Q Consensus 72 i~r~~~rr 79 (216)
...++.||
T Consensus 29 ~~~~~~RR 36 (44)
T 2l2t_A 29 TFAVYVRR 36 (44)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhhh
Confidence 33344433
No 137
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=65.36 E-value=1.5 Score=31.43 Aligned_cols=45 Identities=22% Similarity=0.645 Sum_probs=30.1
Q ss_pred ccccccccccCCcceeecCCCCCccCccchHHHhccCC----CCccCCcc
Q 035743 127 ECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHS----SCPKCRHC 172 (216)
Q Consensus 127 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----~CP~CR~~ 172 (216)
.|.+|...-. ++.+.....|...||..|++.=+.... .||.|+..
T Consensus 56 ~C~~C~~~~~-~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGE-DSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSC-CTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCC-CCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 4677765432 235666667999999999987554322 58888543
No 138
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.87 E-value=7.6 Score=25.25 Aligned_cols=39 Identities=23% Similarity=0.535 Sum_probs=29.0
Q ss_pred CcccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCcccc
Q 035743 125 DAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLI 174 (216)
Q Consensus 125 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (216)
...|+.|-+.+..++.+.. -+..||.+|+ .|-.|+..|.
T Consensus 9 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~CF--------~C~~C~~~L~ 47 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSS---LGKDWHKFCL--------KCERCSKTLT 47 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEE---TTEEEETTTC--------BCSSSCCBCC
T ss_pred CCCCcCCCCEeECCeEEEE---CCeEeeCCCC--------CCCCCCCccC
Confidence 3689999999887665543 5789999884 4677777665
No 139
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.36 E-value=4.9 Score=25.79 Aligned_cols=40 Identities=18% Similarity=0.436 Sum_probs=27.9
Q ss_pred cccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCccccc
Q 035743 126 AECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLIE 175 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (216)
..|+.|-..+...+.+... -+..||.+|+. |-.|+..|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF~--------C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY--KGSSWHETCFI--------CHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE--TTEEEETTTTC--------CSSSCCCCCS
T ss_pred CCCccCCCcccCCceEEEE--CcCeecccCCc--------ccccCCccCC
Confidence 5799999998876544332 57899998853 6667666643
No 140
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=64.04 E-value=2.5 Score=27.29 Aligned_cols=43 Identities=30% Similarity=0.615 Sum_probs=27.4
Q ss_pred CCcccccccccccCCcceeecCC--CC-CccCccchHHHhcc----CCCCccCCc
Q 035743 124 LDAECVICLSEFASGELVRLLPK--CN-HGFHVRCIDKWLRL----HSSCPKCRH 171 (216)
Q Consensus 124 ~~~~C~ICl~~~~~~~~~~~lp~--C~-H~FH~~CI~~Wl~~----~~~CP~CR~ 171 (216)
+...| ||-... .+ ..+.... |. .-||..|+. |.. +-.||.|+.
T Consensus 10 e~~yC-~C~~~~-~g-~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVS-YG-EMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCC-CC-CeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 34567 897753 23 3455555 44 899999998 332 235999964
No 141
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=63.76 E-value=1.6 Score=28.58 Aligned_cols=44 Identities=23% Similarity=0.404 Sum_probs=27.3
Q ss_pred cccccccccccCCcceeecC--CCCCccCccchHHHh--------ccCCCCccCCc
Q 035743 126 AECVICLSEFASGELVRLLP--KCNHGFHVRCIDKWL--------RLHSSCPKCRH 171 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp--~C~H~FH~~CI~~Wl--------~~~~~CP~CR~ 171 (216)
..| ||-.....+. .+..- .|..-||..|+.--- -.+-.||.||.
T Consensus 11 v~C-~C~~~~~~g~-mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDS-MIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSC-EEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCC-EEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 557 7966554443 33442 488899999984311 11346999974
No 142
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=63.68 E-value=1.8 Score=29.18 Aligned_cols=47 Identities=19% Similarity=0.400 Sum_probs=30.9
Q ss_pred CCcccccccccccCCcceeecC--CCCCccCccchHHHhc---------cCCCCccCCcc
Q 035743 124 LDAECVICLSEFASGELVRLLP--KCNHGFHVRCIDKWLR---------LHSSCPKCRHC 172 (216)
Q Consensus 124 ~~~~C~ICl~~~~~~~~~~~lp--~C~H~FH~~CI~~Wl~---------~~~~CP~CR~~ 172 (216)
....| ||-.....+ ..+..- .|..-||..|+.-=-. .+..||.|+..
T Consensus 15 ~~~~C-iC~~~~~~g-~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSLETD-SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCCCCS-CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcCCCC-CEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 34678 798764433 344554 6999999999864321 24469999754
No 143
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.59 E-value=8.1 Score=24.77 Aligned_cols=39 Identities=23% Similarity=0.599 Sum_probs=27.7
Q ss_pred cccccccccccC--CcceeecCCCCCccCccchHHHhccCCCCccCCcccc
Q 035743 126 AECVICLSEFAS--GELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLI 174 (216)
Q Consensus 126 ~~C~ICl~~~~~--~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (216)
..|+-|-..+.. ++.+... -+..||.+|+ .|-.|+..|.
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~a--~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYISF--EERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEEC--SSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCcCCCccccCCCCcceEEE--CCcccCcccC--------EeccCCCcCC
Confidence 579999998875 3333322 6889999885 4677777664
No 144
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.01 E-value=8.6 Score=24.60 Aligned_cols=39 Identities=26% Similarity=0.509 Sum_probs=26.6
Q ss_pred cccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCcccc
Q 035743 126 AECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLI 174 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (216)
..|+.|-..+..++..... -+..||.+|+ .|-.|+..|.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAGVVA--LDRVFHVGCF--------VCSTCRAQLR 44 (72)
T ss_dssp CCCSSSCSCCCSSSCCEEC--SSSEECTTTC--------BCSSSCCBCT
T ss_pred CCCccCCCccCCCceEEEE--CCCeEcccCC--------cccccCCcCC
Confidence 5799999888764433222 5789999885 3666766663
No 145
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.71 E-value=9.8 Score=25.30 Aligned_cols=40 Identities=25% Similarity=0.513 Sum_probs=28.5
Q ss_pred CcccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCccccc
Q 035743 125 DAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLIE 175 (216)
Q Consensus 125 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (216)
...|+.|-..+...+.+.. -+..||.+|+. |-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~~e~v~a---~~~~wH~~CF~--------C~~C~~~L~~ 54 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLCV---NGHFFHRSCFR--------CHTCEATLWP 54 (82)
T ss_dssp SCBCSSSCCBCCTTTBCCB---TTBCCBTTTCB--------CSSSCCBCCT
T ss_pred CCCCcccCCCcccceEEEE---CCCeeCCCcCE--------EcCCCCCcCC
Confidence 3689999998876665542 57899999854 5667666654
No 146
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=62.57 E-value=4.5 Score=26.44 Aligned_cols=28 Identities=25% Similarity=0.468 Sum_probs=16.5
Q ss_pred ccccccccccCCcceeecCCCCCccCccchH
Q 035743 127 ECVICLSEFASGELVRLLPKCNHGFHVRCID 157 (216)
Q Consensus 127 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~ 157 (216)
.|+.|-+.+..++.+.. -+..||.+|+.
T Consensus 2 ~C~~C~~~I~~~~~v~a---~~~~~H~~CF~ 29 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTS---LGKDWHRPCLK 29 (76)
T ss_dssp BCTTTSSBCCGGGEEEE---TTEEEETTTCB
T ss_pred cCCCCCCEEECceEEEE---CCccccCCCCC
Confidence 46777776665544432 36677776643
No 147
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=61.79 E-value=7.4 Score=25.88 Aligned_cols=39 Identities=26% Similarity=0.640 Sum_probs=28.3
Q ss_pred CcccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCcccc
Q 035743 125 DAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLI 174 (216)
Q Consensus 125 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (216)
...|+-|-..+..++.+.. -+..||.+|+ .|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLA---LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEE---TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEEE---CCcccccccC--------CcCcCCCCcC
Confidence 3679999999887665554 4688999884 4666766664
No 148
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=61.75 E-value=14 Score=22.23 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035743 51 SVLLVLSVLLCALICSLGLNFLIRYI 76 (216)
Q Consensus 51 ~viiii~ill~~li~~l~l~~i~r~~ 76 (216)
....+++ +++++++.+.+.++.|..
T Consensus 14 Ia~~vVG-vll~vi~~l~~~~~~RRR 38 (44)
T 2jwa_A 14 IISAVVG-ILLVVVLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHH-HHHHHHHHHHHHhheehh
Confidence 3444444 333333344434444433
No 149
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=60.77 E-value=2.4 Score=26.24 Aligned_cols=41 Identities=27% Similarity=0.555 Sum_probs=26.9
Q ss_pred cccccccCCcceeecCCCCCccCccchHHHh---ccCCCCccCCc
Q 035743 130 ICLSEFASGELVRLLPKCNHGFHVRCIDKWL---RLHSSCPKCRH 171 (216)
Q Consensus 130 ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl---~~~~~CP~CR~ 171 (216)
||-.... +...+....|+.-||..|+.-=- ..+-.||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 5765543 33455566699999999997532 23346998865
No 150
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.41 E-value=7.9 Score=25.48 Aligned_cols=40 Identities=18% Similarity=0.544 Sum_probs=28.5
Q ss_pred cccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCccccc
Q 035743 126 AECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLIE 175 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (216)
..|+.|-..+..++.+... -+..||.+|+ .|-.|+..|..
T Consensus 16 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEY--KGTVWHKDCF--------TCSNCKQVIGT 55 (82)
T ss_dssp CBCSSSCCBCCSSSCEEEC--SSCEEETTTC--------CCSSSCCCCTT
T ss_pred CcCccCCcccccCceEEEE--CccccccccC--------chhhCCCccCC
Confidence 5899999998876554322 5789999885 46677766653
No 151
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=59.91 E-value=6.1 Score=29.59 Aligned_cols=49 Identities=14% Similarity=0.338 Sum_probs=32.5
Q ss_pred CCCccccccccccc-CCcceeecCCCCCccCccchHHHhcc-CC---CCccCCc
Q 035743 123 GLDAECVICLSEFA-SGELVRLLPKCNHGFHVRCIDKWLRL-HS---SCPKCRH 171 (216)
Q Consensus 123 ~~~~~C~ICl~~~~-~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~---~CP~CR~ 171 (216)
..+..|.+|...|. ....-+....|+|.++..|=..--.. +. .|=+|+.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 34578999999994 33344666779999999996542111 11 3888854
No 152
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=59.48 E-value=1.4 Score=31.96 Aligned_cols=46 Identities=22% Similarity=0.631 Sum_probs=31.2
Q ss_pred ccccccccccCCcceeecCCCCCccCccchHHHhccCC----CCccCCccc
Q 035743 127 ECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHS----SCPKCRHCL 173 (216)
Q Consensus 127 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----~CP~CR~~l 173 (216)
.|.||...-. +..+.....|...||..|++.=|.... .||.|+..+
T Consensus 60 ~C~~C~~~~~-~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSEN-DDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTT-TTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCC-CCceEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 5788876532 345666667999999999996444322 499886443
No 153
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=59.36 E-value=9.1 Score=25.77 Aligned_cols=39 Identities=23% Similarity=0.429 Sum_probs=27.0
Q ss_pred CcccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCccccc
Q 035743 125 DAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLIE 175 (216)
Q Consensus 125 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (216)
...|+-|-+.+.. +.+. .-+..||.+|+. |-.|+..|..
T Consensus 25 ~~~C~~C~~~I~~-~~~~---a~~~~~H~~CF~--------C~~C~~~L~~ 63 (89)
T 1x64_A 25 MPLCDKCGSGIVG-AVVK---ARDKYRHPECFV--------CADCNLNLKQ 63 (89)
T ss_dssp CCBCTTTCCBCCS-CCEE---SSSCEECTTTCC--------CSSSCCCTTT
T ss_pred CCCcccCCCEecc-cEEE---ECCceECccCCE--------ecCCCCCCCC
Confidence 3689999988875 3222 267899998854 6667666653
No 154
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=59.16 E-value=2.9 Score=30.11 Aligned_cols=26 Identities=38% Similarity=0.788 Sum_probs=16.9
Q ss_pred CCCCccCccchHHHhccCCCCccCCccccch
Q 035743 146 KCNHGFHVRCIDKWLRLHSSCPKCRHCLIET 176 (216)
Q Consensus 146 ~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 176 (216)
+||+.|. .=+.....||.|+..-++.
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEWIEE 97 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCCBCC
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCccCC
Confidence 4999981 1123456799998765544
No 155
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=55.86 E-value=4.5 Score=28.23 Aligned_cols=45 Identities=20% Similarity=0.355 Sum_probs=27.4
Q ss_pred CCCcccccccccccCCcceeecCCCC---CccCccchHHHh--ccCCCCcc-CC
Q 035743 123 GLDAECVICLSEFASGELVRLLPKCN---HGFHVRCIDKWL--RLHSSCPK-CR 170 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~~~~~~lp~C~---H~FH~~CI~~Wl--~~~~~CP~-CR 170 (216)
.....| ||-.... + ..+....|+ .-||..|+..=- ..+-.||. |+
T Consensus 24 ~~~~yC-iC~~~~~-g-~MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~ 74 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY-G-PMVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCK 74 (90)
T ss_dssp CCSCCS-TTTCCCS-S-SEECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHH
T ss_pred CCCcEE-EeCCCCC-C-CEEEecCCCCccccCcCccCCCCcCCCCCccCChhhc
Confidence 344678 8976432 3 344555555 689999997311 11236999 86
No 156
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=55.76 E-value=11 Score=22.77 Aligned_cols=13 Identities=23% Similarity=0.641 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 035743 64 ICSLGLNFLIRYI 76 (216)
Q Consensus 64 i~~l~l~~i~r~~ 76 (216)
++++.++++.|..
T Consensus 26 ii~~~~~~~~RRr 38 (44)
T 2ks1_B 26 VVALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhh
Confidence 3334444444443
No 157
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=55.53 E-value=5.2 Score=26.44 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=22.1
Q ss_pred cccccccccccCCcceeecCCCCCccCccchH
Q 035743 126 AECVICLSEFASGELVRLLPKCNHGFHVRCID 157 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~ 157 (216)
..|+.|-..+..++.+.. -+..||.+|+.
T Consensus 8 ~~C~~C~~~I~~~~~~~a---~~~~~H~~CF~ 36 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEVQC---DGRSFHRCCFL 36 (81)
T ss_dssp CBCSSSCCBCSSTTEEEE---TTEEEESSSEE
T ss_pred CcCcCcCccccCceeEEe---CCcccccccCc
Confidence 679999999876664433 67899998865
No 158
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=55.08 E-value=4.3 Score=27.42 Aligned_cols=14 Identities=21% Similarity=0.740 Sum_probs=13.1
Q ss_pred CCCCccCccchHHH
Q 035743 146 KCNHGFHVRCIDKW 159 (216)
Q Consensus 146 ~C~H~FH~~CI~~W 159 (216)
.|+|.|+..|-..|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 69999999999998
No 159
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=55.02 E-value=17 Score=24.91 Aligned_cols=39 Identities=21% Similarity=0.394 Sum_probs=28.4
Q ss_pred CCCcccccccccccCCcceeecC-CCCCccCccchHHHhcc
Q 035743 123 GLDAECVICLSEFASGELVRLLP-KCNHGFHVRCIDKWLRL 162 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~~~~~~lp-~C~H~FH~~CI~~Wl~~ 162 (216)
.....|.+|.+.+++.-=+ ..| .=.|.|+-.|-...+++
T Consensus 13 ~a~l~CtlC~erLEdtHFV-QCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSE-ECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCcee-eCCCccCCeeeccccHHHHHh
Confidence 4457899999999875333 333 12599999999998865
No 160
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=54.69 E-value=26 Score=20.82 Aligned_cols=26 Identities=12% Similarity=0.069 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035743 50 SSVLLVLSVLLCALICSLGLNFLIRY 75 (216)
Q Consensus 50 ~~viiii~ill~~li~~l~l~~i~r~ 75 (216)
+..+++++++..+++.++.+..+.++
T Consensus 9 p~wiIi~s~l~GLllL~li~~~LwK~ 34 (42)
T 2k1a_A 9 PIWWVLVGVLGGLLLLTILVLAMWKV 34 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45556666666666655555555444
No 161
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=54.63 E-value=5.8 Score=21.72 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=20.4
Q ss_pred cccccccccccCCcceeecCCCCCccCccch
Q 035743 126 AECVICLSEFASGELVRLLPKCNHGFHVRCI 156 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI 156 (216)
..|+.|-..+-..|.+. - -|..||..|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~-~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--C-LDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--S-SSSCCCGGGC
T ss_pred CcCCccCCEEecceeEE--E-CCeEecccCC
Confidence 57999988876555443 2 5789999884
No 162
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=54.53 E-value=8.2 Score=27.81 Aligned_cols=31 Identities=16% Similarity=0.323 Sum_probs=21.0
Q ss_pred ccccccccccCCcceeecCCCCCccCccchHHH
Q 035743 127 ECVICLSEFASGELVRLLPKCNHGFHVRCIDKW 159 (216)
Q Consensus 127 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~W 159 (216)
.|+.|-..+...+.+.. .-++.||.+|+.-+
T Consensus 10 ~C~~C~~~I~~~e~~~~--a~~~~~H~~CF~C~ 40 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMR--VKDKVYHLECFKCA 40 (123)
T ss_dssp CCSSSSCCCCTTCCCCC--CSSCCCCTTTCBCT
T ss_pred cccCCCCeecCCceEEE--ECCcccccccCccc
Confidence 69999888876543322 25788888886544
No 163
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.30 E-value=9.1 Score=24.90 Aligned_cols=39 Identities=26% Similarity=0.688 Sum_probs=26.1
Q ss_pred cccccccccccC--CcceeecCCCCCccCccchHHHhccCCCCccCCcccc
Q 035743 126 AECVICLSEFAS--GELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLI 174 (216)
Q Consensus 126 ~~C~ICl~~~~~--~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (216)
..|+.|-..+.. ++..... -+..||.+|+. |-.|+..|.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a--~~~~wH~~CF~--------C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICF--QDSQWHSECFN--------CGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEE--TTEEEEGGGCB--------CTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEEE--CCcccCcccCC--------hhhCCCcCC
Confidence 579999998875 3333222 67899998853 556665554
No 164
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=54.30 E-value=7.4 Score=24.87 Aligned_cols=37 Identities=19% Similarity=0.449 Sum_probs=26.2
Q ss_pred cccccccccccCCcceeecC--C--CCCccCccchHHHhcc
Q 035743 126 AECVICLSEFASGELVRLLP--K--CNHGFHVRCIDKWLRL 162 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp--~--C~H~FH~~CI~~Wl~~ 162 (216)
..|+-|...++..+....+. . |++.|+..|...|-..
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 57999988888766433322 2 7788888888888643
No 165
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=52.70 E-value=11 Score=24.89 Aligned_cols=6 Identities=33% Similarity=0.689 Sum_probs=2.5
Q ss_pred CCCccC
Q 035743 147 CNHGFH 152 (216)
Q Consensus 147 C~H~FH 152 (216)
|.|-|-
T Consensus 59 C~hr~q 64 (70)
T 2klu_A 59 SPHRFQ 64 (70)
T ss_dssp CCCCCC
T ss_pred CcHHHh
Confidence 444443
No 166
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=52.62 E-value=12 Score=22.52 Aligned_cols=28 Identities=18% Similarity=0.125 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035743 50 SSVLLVLSVLLCALICSLGLNFLIRYIL 77 (216)
Q Consensus 50 ~~viiii~ill~~li~~l~l~~i~r~~~ 77 (216)
....-+++-+++++++++.++++.|...
T Consensus 11 aIA~gVVgGv~~v~ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 11 LIAAGVIGGLFILVIVGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred eEEEeehHHHHHHHHHHHHHHHHhhhhh
Confidence 3333344333333344444445554443
No 167
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=52.18 E-value=2.6 Score=30.39 Aligned_cols=45 Identities=20% Similarity=0.169 Sum_probs=27.9
Q ss_pred ccccccccccCCcceeecCCCCCccCccchHHHhc----c----CCCCccCCc
Q 035743 127 ECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLR----L----HSSCPKCRH 171 (216)
Q Consensus 127 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~----~----~~~CP~CR~ 171 (216)
.|..|......++.+.....|+..||..|...-.. . .-.||.|+.
T Consensus 61 ~c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 61 EVDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp CBCCHHHHCCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred cccccccccccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 34444444444445666677999999999875421 1 124999974
No 168
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=51.93 E-value=5.6 Score=27.16 Aligned_cols=37 Identities=32% Similarity=0.751 Sum_probs=23.8
Q ss_pred ccccccccc--CCcceeecCCCCCccCccchHHHhccCC
Q 035743 128 CVICLSEFA--SGELVRLLPKCNHGFHVRCIDKWLRLHS 164 (216)
Q Consensus 128 C~ICl~~~~--~~~~~~~lp~C~H~FH~~CI~~Wl~~~~ 164 (216)
|+=|-.-+. .+......+.|++.|+..|-..|-..|.
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H~ 66 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHR 66 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTTT
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCchhhcCC
Confidence 665543332 1223346767999999999999955554
No 169
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=51.92 E-value=3 Score=36.56 Aligned_cols=36 Identities=14% Similarity=0.187 Sum_probs=0.0
Q ss_pred CcccccccccccCCcceeecCCCCCccCccchHHHh
Q 035743 125 DAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWL 160 (216)
Q Consensus 125 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl 160 (216)
...|.+|...|.--..-..+..||++||..|-..++
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp ------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 368999999986543333455699999999998764
No 170
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=51.64 E-value=4.8 Score=26.54 Aligned_cols=22 Identities=27% Similarity=0.185 Sum_probs=17.6
Q ss_pred hHHHhccCCCCccCCccccchh
Q 035743 156 IDKWLRLHSSCPKCRHCLIETC 177 (216)
Q Consensus 156 I~~Wl~~~~~CP~CR~~l~~~~ 177 (216)
++.||..-..||+|+.+|....
T Consensus 3 md~~LLeiL~CP~ck~~L~~~~ 24 (67)
T 2jny_A 3 LDPQLLEVLACPKDKGPLRYLE 24 (67)
T ss_dssp SCGGGTCCCBCTTTCCBCEEET
T ss_pred CCHHHHHHhCCCCCCCcCeEeC
Confidence 4678888889999999887643
No 171
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=51.02 E-value=7.8 Score=24.87 Aligned_cols=42 Identities=31% Similarity=0.649 Sum_probs=29.7
Q ss_pred cccccccccccCCcceeecCCCCCccCccchHHHhccC-CCCccC
Q 035743 126 AECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLH-SSCPKC 169 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~-~~CP~C 169 (216)
..|--|...|.+. ..-..++|++.|+.+| |..+-.. .+||.|
T Consensus 16 ~~C~~C~~~~~~~-~~y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQ-HVYVCAVCQNVFCVDC-DVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTS-EEECCTTTTCCBCHHH-HHTTTTTSCSSSTT
T ss_pred CcccccCcccCCC-ccEECCccCcCcccch-hHHHHhhccCCcCC
Confidence 4699999998543 2245778999999999 4444333 369988
No 172
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=49.59 E-value=5.1 Score=26.53 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=16.0
Q ss_pred hHHHhccCCCCccCCccccchh
Q 035743 156 IDKWLRLHSSCPKCRHCLIETC 177 (216)
Q Consensus 156 I~~Wl~~~~~CP~CR~~l~~~~ 177 (216)
++.||..-..||.|+.+|....
T Consensus 1 md~~LLeiL~CP~ck~~L~~~~ 22 (69)
T 2pk7_A 1 MDTKLLDILACPICKGPLKLSA 22 (69)
T ss_dssp --CCGGGTCCCTTTCCCCEECT
T ss_pred CChHHHhheeCCCCCCcCeEeC
Confidence 3567777889999999887543
No 173
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=48.84 E-value=3.7 Score=37.34 Aligned_cols=46 Identities=20% Similarity=0.462 Sum_probs=32.5
Q ss_pred cccccccccccCCcceeecCCCCCccCccchHHHhc-----cCCCCccCCcc
Q 035743 126 AECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLR-----LHSSCPKCRHC 172 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-----~~~~CP~CR~~ 172 (216)
..| ||...+..+...+.+..|.--||..|+.---. .+-.||.|+..
T Consensus 38 ~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 38 VYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp EET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred eEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 456 89887754555666777999999999964322 23469999754
No 174
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.40 E-value=22 Score=23.25 Aligned_cols=39 Identities=18% Similarity=0.345 Sum_probs=27.2
Q ss_pred CcccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCccccc
Q 035743 125 DAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLIE 175 (216)
Q Consensus 125 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (216)
...|+-|-..+. ++.+ ..-+..||.+|+ .|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~-~~~v---~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (79)
T 2cor_A 15 KYICQKCHAIID-EQPL---IFKNDPYHPDHF--------NCANCGKELTA 53 (79)
T ss_dssp CCBCTTTCCBCC-SCCC---CCSSSCCCTTTS--------BCSSSCCBCCT
T ss_pred CCCCccCCCEec-ceEE---EECcceeCCCCC--------EeCCCCCccCC
Confidence 368999999887 3332 236789999884 46777776653
No 175
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=47.40 E-value=11 Score=29.09 Aligned_cols=36 Identities=28% Similarity=0.585 Sum_probs=27.1
Q ss_pred CCCcccccccccccCCcceeecC--CCCCccCccchHHHhcc
Q 035743 123 GLDAECVICLSEFASGELVRLLP--KCNHGFHVRCIDKWLRL 162 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~~~~~~lp--~C~H~FH~~CI~~Wl~~ 162 (216)
+.+..|.||-+. .++.... .|...|+..||+.++..
T Consensus 77 G~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 77 GYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp SSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 456789999753 3455554 58899999999999744
No 176
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.33 E-value=15 Score=23.23 Aligned_cols=39 Identities=21% Similarity=0.617 Sum_probs=26.6
Q ss_pred CcccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCccccc
Q 035743 125 DAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLIE 175 (216)
Q Consensus 125 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (216)
...|+.|-+.+.. +.+.. -+..||.+|+ .|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~CF--------~C~~C~~~L~~ 43 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVIKA---MNNSWHPECF--------RCDLCQEVLAD 43 (70)
T ss_dssp SSBCSSSCCBCCS-CCEEE---TTEEECTTTS--------BCSSSCCBCSS
T ss_pred CCcCccCCCEecc-eEEEE---CcccccccCC--------EeCCCCCcCCC
Confidence 3679999988873 33332 5789999885 46667666653
No 177
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=47.04 E-value=13 Score=28.48 Aligned_cols=47 Identities=17% Similarity=0.304 Sum_probs=31.7
Q ss_pred CCcccccccccccC-CcceeecCCCCCccCccchHHHhccCC--CCccCCc
Q 035743 124 LDAECVICLSEFAS-GELVRLLPKCNHGFHVRCIDKWLRLHS--SCPKCRH 171 (216)
Q Consensus 124 ~~~~C~ICl~~~~~-~~~~~~lp~C~H~FH~~CI~~Wl~~~~--~CP~CR~ 171 (216)
.+..|++|...|.- ...-.+...|+|.++..|= .|+.... .|=+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 45799999998742 1234456669999999997 3554333 3777754
No 178
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=45.83 E-value=5 Score=25.86 Aligned_cols=48 Identities=33% Similarity=0.596 Sum_probs=29.0
Q ss_pred CCCccccccccc-ccCCcceeecCCCCCccCccchHHH-hccCC---CCccCCc
Q 035743 123 GLDAECVICLSE-FASGELVRLLPKCNHGFHVRCIDKW-LRLHS---SCPKCRH 171 (216)
Q Consensus 123 ~~~~~C~ICl~~-~~~~~~~~~lp~C~H~FH~~CI~~W-l~~~~---~CP~CR~ 171 (216)
+....|.||+.. |.++-.=.-.- |.-.|+..|=..| ++.++ .|-+||.
T Consensus 7 ~d~~~C~iC~KTKFADG~Gh~C~y-Ck~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 7 GDAPTCGICHKTKFADGCGHNCSY-CQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SCCCCCSSSSCSCCCSSCCEEBTT-TCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred CCcchhhhhccceeccCCCccccc-cCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 455789999865 55553332233 6677777777776 33333 3666653
No 179
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.71 E-value=19 Score=24.27 Aligned_cols=30 Identities=23% Similarity=0.475 Sum_probs=22.7
Q ss_pred CcccccccccccCCcceeecCCCCCccCccchH
Q 035743 125 DAECVICLSEFASGELVRLLPKCNHGFHVRCID 157 (216)
Q Consensus 125 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~ 157 (216)
...|+-|-..+...+.+. . -+..||.+|+.
T Consensus 15 ~~~C~~C~~~I~~~~~v~--a-~~~~~H~~CF~ 44 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLL--A-NQQVFHISCFR 44 (91)
T ss_dssp SCBCTTTCCBCCTTSEEE--C-SSSEEETTTCB
T ss_pred CCcCccCCCccCCceeEE--E-CCCEECCCCCe
Confidence 368999999988766543 2 67899998864
No 180
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=44.38 E-value=4.6 Score=25.59 Aligned_cols=22 Identities=27% Similarity=0.384 Sum_probs=16.8
Q ss_pred hHHHhccCCCCccCCccccchh
Q 035743 156 IDKWLRLHSSCPKCRHCLIETC 177 (216)
Q Consensus 156 I~~Wl~~~~~CP~CR~~l~~~~ 177 (216)
++.||..-..||.|+.+|....
T Consensus 3 ~d~~lL~iL~CP~c~~~L~~~~ 24 (56)
T 2kpi_A 3 LEAGLLEILACPACHAPLEERD 24 (56)
T ss_dssp CCCSCTTSCCCSSSCSCEEEET
T ss_pred CCHHHHhheeCCCCCCcceecC
Confidence 3567777778999999987654
No 181
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=43.99 E-value=13 Score=28.31 Aligned_cols=38 Identities=24% Similarity=0.670 Sum_probs=24.2
Q ss_pred cccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCccc
Q 035743 126 AECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCL 173 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l 173 (216)
..|..|-..+..++.+... -++.||.+|+ .|-.|...|
T Consensus 66 ~~C~~C~~~I~~~~~v~~a--~~~~~H~~CF--------~C~~C~~~L 103 (169)
T 2rgt_A 66 TKCAACQLGIPPTQVVRRA--QDFVYHLHCF--------ACVVCKRQL 103 (169)
T ss_dssp CBCTTTCCBCCTTSEEEEE--TTEEEEGGGC--------BCTTTCCBC
T ss_pred ccccccccccCCCcEEEEc--CCceEeeCCC--------cCCCCCCCC
Confidence 4688887777665544322 5788888885 455555544
No 182
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.73 E-value=19 Score=23.48 Aligned_cols=38 Identities=21% Similarity=0.371 Sum_probs=27.2
Q ss_pred CcccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCcccc
Q 035743 125 DAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLI 174 (216)
Q Consensus 125 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (216)
...|+-|-..+.. +.+ . .-+..||.+|+ .|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~-~~~--~-a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVG-VFV--K-LRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCS-SCE--E-CSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCccccCCCCccC-cEE--E-ECcceeCcCcC--------eeCCCCCCCC
Confidence 3689999998875 322 2 26789999985 4677777764
No 183
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.44 E-value=18 Score=23.72 Aligned_cols=39 Identities=23% Similarity=0.514 Sum_probs=25.8
Q ss_pred cccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCcccc
Q 035743 126 AECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLI 174 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (216)
..|+.|-..+..++.+ +..-+..||.+|+. |-.|+..|.
T Consensus 16 ~~C~~C~~~I~~~~~~--~~a~~~~~H~~CF~--------C~~C~~~L~ 54 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRE--LFYEDRHFHEGCFR--------CCRCQRSLA 54 (82)
T ss_dssp CBCTTTCCBCCSSCCB--CCCSSCCCBTTTSB--------CTTTCCBCS
T ss_pred CcCccCCCccccCcEE--EEeCCccccccCCe--------ecCCCCccC
Confidence 5799999888743333 22257889998854 566666654
No 184
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=43.11 E-value=5.1 Score=26.46 Aligned_cols=21 Identities=19% Similarity=0.079 Sum_probs=15.9
Q ss_pred HHHhccCCCCccCCccccchh
Q 035743 157 DKWLRLHSSCPKCRHCLIETC 177 (216)
Q Consensus 157 ~~Wl~~~~~CP~CR~~l~~~~ 177 (216)
+.||..-..||.|+.+|....
T Consensus 2 d~~LL~iL~CP~ck~~L~~~~ 22 (68)
T 2jr6_A 2 EKKFLDILVCPVTKGRLEYHQ 22 (68)
T ss_dssp CCSSSCCCBCSSSCCBCEEET
T ss_pred ChHHhhheECCCCCCcCeEeC
Confidence 456777778999999887543
No 185
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=43.01 E-value=13 Score=32.68 Aligned_cols=45 Identities=24% Similarity=0.574 Sum_probs=32.7
Q ss_pred CCCcccccccccccCCcceeecC--CCCCccCccchHHHhcc----------CCCCccCCc
Q 035743 123 GLDAECVICLSEFASGELVRLLP--KCNHGFHVRCIDKWLRL----------HSSCPKCRH 171 (216)
Q Consensus 123 ~~~~~C~ICl~~~~~~~~~~~lp--~C~H~FH~~CI~~Wl~~----------~~~CP~CR~ 171 (216)
+.+..|.+|-+. .++.... .|...|+..||+.++.. +=.|=+|.-
T Consensus 91 G~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 91 GYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 456789999753 3455665 69999999999999832 225888864
No 186
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=42.75 E-value=17 Score=31.85 Aligned_cols=45 Identities=18% Similarity=0.345 Sum_probs=27.5
Q ss_pred cccccccccccCCcceeecCCCCCccCccchHHHhc---c--CCCCccCCcccc
Q 035743 126 AECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLR---L--HSSCPKCRHCLI 174 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~---~--~~~CP~CR~~l~ 174 (216)
..|++=...+.. .+|-.. |.|.-|-+ +..||. + .-.||+|...+.
T Consensus 250 L~CPlS~~ri~~--PvRg~~-C~HlQCFD-l~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 250 LQCPISYTRMKY--PSKSIN-CKHLQCFD-ALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp SBCTTTSSBCSS--EEEETT-CCSSCCEE-HHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred ecCCCccccccc--cCcCCc-CCCcceEC-HHHHHHHhhcCCceeCCCCCcccC
Confidence 579987777644 467776 99873222 122442 2 236999987663
No 187
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=42.70 E-value=17 Score=23.40 Aligned_cols=39 Identities=26% Similarity=0.561 Sum_probs=27.3
Q ss_pred cccccccccccC---CcceeecCCCCCccCccchHHHhccCCCCccCCcccc
Q 035743 126 AECVICLSEFAS---GELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLI 174 (216)
Q Consensus 126 ~~C~ICl~~~~~---~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (216)
..|+-|-..+.. ++..... -+..||.+|+ .|-.|+..|.
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~ 57 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAY--EGQSWHDYCF--------HCKKCSVNLA 57 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEE--TTEEEETTTC--------BCSSSCCBCT
T ss_pred ccCcccCCcccCCCCCceeEEE--CcceeCcccC--------EehhcCCCCC
Confidence 579999998875 3233222 5789999884 4778887775
No 188
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=42.67 E-value=46 Score=22.35 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 035743 53 LLVLSVLLCALICSLGLNFLIRYI 76 (216)
Q Consensus 53 iiii~ill~~li~~l~l~~i~r~~ 76 (216)
.++++++..++++.+++.++.+++
T Consensus 12 ~Iv~gvi~gilliGllllliwk~~ 35 (79)
T 2knc_B 12 VVLLSVMGAILLIGLAALLIWKLL 35 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445554444444444444433
No 189
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.09 E-value=21 Score=22.97 Aligned_cols=37 Identities=19% Similarity=0.530 Sum_probs=24.0
Q ss_pred cccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCcccc
Q 035743 126 AECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLI 174 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (216)
..|+-|-..+.. + .+..-+..||.+|+. |-.|...|.
T Consensus 6 ~~C~~C~~~I~~-~---~v~a~~~~wH~~CF~--------C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG-R---VLEAGEKHYHPSCAL--------CVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS-C---CBCCSSCCBCTTTSC--------CSSSCCCCC
T ss_pred CCcccCCCEecC-e---eEEeCCCCCCCCcCE--------eCCCCCCCC
Confidence 579999888765 2 223367899988854 555555544
No 190
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=41.07 E-value=18 Score=26.18 Aligned_cols=38 Identities=26% Similarity=0.559 Sum_probs=28.1
Q ss_pred cccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCcccc
Q 035743 126 AECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLI 174 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (216)
..|+-|-..+.....+.. -+..||.+|+ .|-.|+..|.
T Consensus 62 ~~C~~C~~~I~~~~~v~a---~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 62 KRCAGCGGKIADRFLLYA---MDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp SBBSSSSSBCCSSSEEEE---TTEEEETTTS--------BCTTTCCBGG
T ss_pred CcCcCCCCCcCCcEEEEe---CCcEEccccc--------CcCcCCCccc
Confidence 579999988876533433 6789999884 5778887775
No 191
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=40.65 E-value=60 Score=21.23 Aligned_cols=29 Identities=17% Similarity=0.327 Sum_probs=18.3
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 035743 45 NKNLDSSVLLVLSVLLCALICSLGLNFLI 73 (216)
Q Consensus 45 ~~~~~~~viiii~ill~~li~~l~l~~i~ 73 (216)
+-.++.--+=+-+.++.++++++++.++.
T Consensus 9 pF~YDY~tLRigGLifA~vLfi~GI~iil 37 (67)
T 2jp3_A 9 PFYYDWESLQLGGLIFGGLLCIAGIALAL 37 (67)
T ss_dssp GGGGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchHHheecchhhHHHHHHHHHHHHH
Confidence 34556666666666667777777766554
No 192
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=40.64 E-value=18 Score=31.62 Aligned_cols=46 Identities=17% Similarity=0.271 Sum_probs=27.6
Q ss_pred cccccccccccCCcceeecCCCCCc--cCccchHHHhcc--CCCCccCCcccc
Q 035743 126 AECVICLSEFASGELVRLLPKCNHG--FHVRCIDKWLRL--HSSCPKCRHCLI 174 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp~C~H~--FH~~CI~~Wl~~--~~~CP~CR~~l~ 174 (216)
..|++=...+.. .+|-.. |.|. |-..=+-....+ .-.||+|...+.
T Consensus 216 L~CPlS~~ri~~--P~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLTI--PCRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCSS--EEEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeCCCccceecc--CCcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 579988777644 467776 9987 332222222222 236999988764
No 193
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=40.51 E-value=14 Score=28.67 Aligned_cols=31 Identities=23% Similarity=0.472 Sum_probs=21.8
Q ss_pred ccccccccccCCcceeecCCCCCccCccchHHH
Q 035743 127 ECVICLSEFASGELVRLLPKCNHGFHVRCIDKW 159 (216)
Q Consensus 127 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~W 159 (216)
.|..|-..+...+.+... -++.||.+|+.-.
T Consensus 71 ~C~~C~~~I~~~e~~i~a--~~~~~H~~CF~C~ 101 (188)
T 1rut_X 71 ACSACGQSIPASELVMRA--QGNVYHLKCFTCS 101 (188)
T ss_dssp ECTTTCCEECTTSEEEEE--TTEEECGGGCBCT
T ss_pred ccccCCCccccCcEEEEc--CCCEEeCCCCeEC
Confidence 699998888765544332 6889999986543
No 194
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=40.16 E-value=5.6 Score=26.42 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=15.3
Q ss_pred HHHhccCCCCccCCccccchh
Q 035743 157 DKWLRLHSSCPKCRHCLIETC 177 (216)
Q Consensus 157 ~~Wl~~~~~CP~CR~~l~~~~ 177 (216)
+.||..-..||.|+.+|....
T Consensus 2 d~~LL~iL~CP~ck~~L~~~~ 22 (70)
T 2js4_A 2 ESRLLDILVCPVCKGRLEFQR 22 (70)
T ss_dssp CCCCCCCCBCTTTCCBEEEET
T ss_pred ChHHhhheECCCCCCcCEEeC
Confidence 456666778999999887543
No 195
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.74 E-value=27 Score=23.31 Aligned_cols=38 Identities=16% Similarity=0.522 Sum_probs=26.5
Q ss_pred CcccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCcccc
Q 035743 125 DAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLI 174 (216)
Q Consensus 125 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (216)
...|+.|-..+. ++.+. - -+..||.+|+ .|-.|+..|.
T Consensus 25 ~~~C~~C~~~I~-~~~v~--a-~~~~~H~~CF--------~C~~C~~~L~ 62 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPFLV--A-LGKSWHPEEF--------NCAHCKNTMA 62 (90)
T ss_dssp CCBBSSSCCBCC-SCEEE--E-TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCccCCCEec-ceEEE--E-CCccccccCC--------ccCCCCCCCC
Confidence 368999999885 33332 2 6899999885 4666766665
No 196
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=38.72 E-value=29 Score=23.56 Aligned_cols=28 Identities=25% Similarity=0.503 Sum_probs=13.6
Q ss_pred cccccccccccC-CcceeecCCCCCccCccch
Q 035743 126 AECVICLSEFAS-GELVRLLPKCNHGFHVRCI 156 (216)
Q Consensus 126 ~~C~ICl~~~~~-~~~~~~lp~C~H~FH~~CI 156 (216)
..|+.|-+.+.. ++.+.. -+..||.+|+
T Consensus 6 ~~C~~C~~~I~~~~~~~~a---~~~~~H~~CF 34 (101)
T 2cup_A 6 SGCVECRKPIGADSKEVHY---KNRFWHDTCF 34 (101)
T ss_dssp CBCSSSCCBCCSSSCEEEE---TTEEEETTTC
T ss_pred CcCcccCCcccCCceEEEE---CccChhhcCC
Confidence 456666666653 222222 3455555553
No 197
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=38.52 E-value=5.1 Score=26.46 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=15.4
Q ss_pred HHHhccCCCCccCCccccchh
Q 035743 157 DKWLRLHSSCPKCRHCLIETC 177 (216)
Q Consensus 157 ~~Wl~~~~~CP~CR~~l~~~~ 177 (216)
+.||..-..||.|+.+|....
T Consensus 2 d~~LL~iL~CP~ck~~L~~~~ 22 (68)
T 2hf1_A 2 DAKFLEILVCPLCKGPLVFDK 22 (68)
T ss_dssp CCCCEEECBCTTTCCBCEEET
T ss_pred ChHHhhheECCCCCCcCeEeC
Confidence 456666678999999887543
No 198
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=38.36 E-value=14 Score=26.48 Aligned_cols=38 Identities=18% Similarity=0.562 Sum_probs=23.6
Q ss_pred ccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCcccc
Q 035743 127 ECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLI 174 (216)
Q Consensus 127 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (216)
.|..|-..+...+.+... -++.||.+|+ .|-.|...|.
T Consensus 68 ~C~~C~~~I~~~e~~~~a--~~~~~H~~CF--------~C~~C~~~L~ 105 (131)
T 2xjy_A 68 LCASCDKRIRAYEMTMRV--KDKVYHLECF--------KCAACQKHFC 105 (131)
T ss_dssp ECTTTCCEECTTSEEEEE--TTEEEEGGGC--------BCTTTCCBCC
T ss_pred ChhhcCCccCccceeEee--CCceECccCc--------ccCCCCCCCC
Confidence 677787777654433222 5677887773 4666766653
No 199
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=37.71 E-value=55 Score=21.80 Aligned_cols=30 Identities=23% Similarity=0.475 Sum_probs=20.7
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 035743 44 INKNLDSSVLLVLSVLLCALICSLGLNFLI 73 (216)
Q Consensus 44 ~~~~~~~~viiii~ill~~li~~l~l~~i~ 73 (216)
++-.++.--+=+-+.++.++++++++.++.
T Consensus 10 dpF~YDY~tLRigGLifA~vLfi~GI~iil 39 (74)
T 2zxe_G 10 ERFTYDYYRLRVVGLIVAAVLCVIGIIILL 39 (74)
T ss_dssp GGGCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcccchHHheeccchhHHHHHHHHHHHHH
Confidence 445677777777777777777777776653
No 200
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.70 E-value=25 Score=22.90 Aligned_cols=37 Identities=19% Similarity=0.511 Sum_probs=25.8
Q ss_pred cccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCcccc
Q 035743 126 AECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLI 174 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (216)
..|+.|-+.+. ++.+ ..-+..||.+|+ .|-.|+..|.
T Consensus 16 ~~C~~C~~~I~-~~~~---~a~~~~~H~~CF--------~C~~C~~~L~ 52 (81)
T 1x6a_A 16 EFCHGCSLLMT-GPFM---VAGEFKYHPECF--------ACMSCKVIIE 52 (81)
T ss_dssp CBCTTTCCBCC-SCCB---CCTTCCBCTTSC--------BCTTTCCBCC
T ss_pred CcCccCCCCcC-ceEE---EECCceeccccC--------CccCCCCccC
Confidence 57999998887 3322 226789999884 4677777664
No 201
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=37.38 E-value=10 Score=28.78 Aligned_cols=25 Identities=20% Similarity=0.433 Sum_probs=14.5
Q ss_pred cCCCCCccCccchHHHhccCCCCccCCcccc
Q 035743 144 LPKCNHGFHVRCIDKWLRLHSSCPKCRHCLI 174 (216)
Q Consensus 144 lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (216)
+..|||.|-.. .....||.|-..+.
T Consensus 135 C~~Cg~~~~~~------~~~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 135 CIGCGRKFSTL------PPGGVCPDCGSKVK 159 (165)
T ss_dssp ESSSCCEESSC------CGGGBCTTTCCBEE
T ss_pred CCCCCCcccCC------CCCCcCCCCCCcce
Confidence 33477776543 22346888876653
No 202
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=37.24 E-value=16 Score=28.01 Aligned_cols=8 Identities=25% Similarity=0.991 Sum_probs=4.1
Q ss_pred CCccCccc
Q 035743 148 NHGFHVRC 155 (216)
Q Consensus 148 ~H~FH~~C 155 (216)
++.||.+|
T Consensus 140 ~~~~H~~C 147 (182)
T 2jtn_A 140 DFVYHLHC 147 (182)
T ss_dssp TEECCTTT
T ss_pred CCCEEeCC
Confidence 44555555
No 203
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=37.19 E-value=40 Score=22.54 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 035743 50 SSVLLVLSVLLCALICSLGLNFLIRYILIKCSR 82 (216)
Q Consensus 50 ~~viiii~ill~~li~~l~l~~i~r~~~rr~~~ 82 (216)
..++.+++|++++ ..+..+++..+|++ |.++
T Consensus 12 tgvvtv~viliav-aalg~li~gcwcyl-rlqr 42 (90)
T 1zza_A 12 TGVVTVIVILIAI-AALGALILGCWCYL-RLQR 42 (90)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHTTT-SSCS
T ss_pred cceEEehhHHHHH-HHHHHHHHHHHHHH-HHHH
Confidence 4455544443332 33333445555665 4433
No 204
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=37.13 E-value=38 Score=23.56 Aligned_cols=49 Identities=22% Similarity=0.473 Sum_probs=32.5
Q ss_pred ccccccccccc---CCcceeecCCCCCccCccchHHHhc-cCCCCccCCcccc
Q 035743 126 AECVICLSEFA---SGELVRLLPKCNHGFHVRCIDKWLR-LHSSCPKCRHCLI 174 (216)
Q Consensus 126 ~~C~ICl~~~~---~~~~~~~lp~C~H~FH~~CI~~Wl~-~~~~CP~CR~~l~ 174 (216)
..|.||-+++. +++.......|+--.+..|.+-=.+ .++.||-|++.+-
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 68999999964 3333333444555567777765444 3568999988765
No 205
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.52 E-value=29 Score=21.79 Aligned_cols=37 Identities=27% Similarity=0.587 Sum_probs=25.9
Q ss_pred cccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCcccc
Q 035743 126 AECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLI 174 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (216)
..|+.|-..+.. +.+ .. -+..||.+|+ .|-.|+..|.
T Consensus 6 ~~C~~C~~~I~~-~~~--~a-~~~~~H~~CF--------~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPITT-GGV--TY-REQPWHKECF--------VCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCCS-SEE--ES-SSSEEETTTS--------BCSSSCCBCT
T ss_pred CCCcccCCeecc-ceE--EE-CccccCCCCC--------ccCCCCCcCC
Confidence 579999988874 332 22 6789999884 4667777664
No 206
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=36.04 E-value=12 Score=26.46 Aligned_cols=40 Identities=20% Similarity=0.476 Sum_probs=24.9
Q ss_pred cccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCcccc
Q 035743 126 AECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLI 174 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (216)
..|+.|..+++-... +.++..|=.. ++....||-|..+|.
T Consensus 33 ~~CP~Cq~eL~~~g~--------~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQDNG--------HARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEETT--------EEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred ccCccCCCcceecCC--------EEECccccch-hhccccCcchhhHHH
Confidence 689999988754322 2223334332 345667999988775
No 207
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=35.74 E-value=8.7 Score=20.86 Aligned_cols=12 Identities=33% Similarity=0.747 Sum_probs=8.7
Q ss_pred CCCccCCccccc
Q 035743 164 SSCPKCRHCLIE 175 (216)
Q Consensus 164 ~~CP~CR~~l~~ 175 (216)
..||+|+..++.
T Consensus 4 ~~CpvCk~q~Pd 15 (28)
T 2jvx_A 4 FCCPKCQYQAPD 15 (28)
T ss_dssp EECTTSSCEESS
T ss_pred ccCccccccCcC
Confidence 469999876654
No 208
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=35.71 E-value=21 Score=22.19 Aligned_cols=37 Identities=22% Similarity=0.561 Sum_probs=26.5
Q ss_pred cccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCcccc
Q 035743 126 AECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLI 174 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (216)
..|+.|-..+. ++. +. .-+..||.+|+ .|-.|+..|.
T Consensus 6 ~~C~~C~~~I~-~~~--~~-a~~~~~H~~CF--------~C~~C~~~L~ 42 (66)
T 1nyp_A 6 PICGACRRPIE-GRV--VN-AMGKQWHVEHF--------VCAKCEKPFL 42 (66)
T ss_dssp CEETTTTEECC-SCE--EC-CTTSBEETTTC--------BCTTTCCBCS
T ss_pred CCCcccCCEec-ceE--EE-ECccccccCcC--------EECCCCCCCC
Confidence 57999999887 332 22 26789999884 4777877765
No 209
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.55 E-value=32 Score=22.36 Aligned_cols=37 Identities=24% Similarity=0.551 Sum_probs=25.3
Q ss_pred cccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCcccc
Q 035743 126 AECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLI 174 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (216)
..|+.|-..+.. +.+.. -+..||.+|+. |-.|+..|.
T Consensus 16 ~~C~~C~~~I~~-~~v~a---~~~~wH~~CF~--------C~~C~~~L~ 52 (81)
T 1v6g_A 16 TRCFSCDQFIEG-EVVSA---LGKTYHPDCFV--------CAVCRLPFP 52 (81)
T ss_dssp CBCTTTCCBCCS-CCEEE---TTEEECTTTSS--------CSSSCCCCC
T ss_pred CcCccccCEecc-ceEEE---CCceeCccCCc--------cccCCCCCC
Confidence 479999988873 33332 67899998854 556666554
No 210
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=34.26 E-value=31 Score=24.30 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=17.1
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHH
Q 035743 43 AINKNLDSSVLLVLSVLLCALICSL 67 (216)
Q Consensus 43 ~~~~~~~~~viiii~ill~~li~~l 67 (216)
.+.-..++.+++++++++++++++|
T Consensus 63 s~GlKV~P~~VLv~sl~Fi~~Vi~L 87 (96)
T 2wwb_C 63 SPGLKVGPVPVLVMSLLFIASVFML 87 (96)
T ss_dssp SCCCCCSSCSHHHHHHHHHHHHHHH
T ss_pred CCceEECCEEehhhHHHHHHHHHHH
Confidence 4455777888888877777666544
No 211
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=33.90 E-value=35 Score=22.34 Aligned_cols=31 Identities=23% Similarity=0.445 Sum_probs=23.2
Q ss_pred CCcccccccccccCCcceeecCCC-CCccCccchHHH
Q 035743 124 LDAECVICLSEFASGELVRLLPKC-NHGFHVRCIDKW 159 (216)
Q Consensus 124 ~~~~C~ICl~~~~~~~~~~~lp~C-~H~FH~~CI~~W 159 (216)
+..-|.||.++ ..++-+. | +-+|+..|..+-
T Consensus 7 e~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 7 GLPWCCICNED----ATLRCAG-CDGDLYCARCFREG 38 (67)
T ss_dssp CCSSCTTTCSC----CCEEETT-TTSEEECSSHHHHH
T ss_pred CCCeeEEeCCC----CeEEecC-CCCceehHHHHHHH
Confidence 34679999887 3466665 9 799999997664
No 212
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=33.03 E-value=74 Score=18.52 Aligned_cols=12 Identities=33% Similarity=0.562 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 035743 66 SLGLNFLIRYIL 77 (216)
Q Consensus 66 ~l~l~~i~r~~~ 77 (216)
+++..+++.+..
T Consensus 23 iIG~IllI~y~I 34 (40)
T 1afo_A 23 VIGTILLISYGI 34 (40)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333344444444
No 213
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=32.52 E-value=25 Score=21.99 Aligned_cols=39 Identities=26% Similarity=0.589 Sum_probs=26.7
Q ss_pred cccccccccccCCcceeecCCCCCccC--ccchHHHhccCCCCccCCcccc
Q 035743 126 AECVICLSEFASGELVRLLPKCNHGFH--VRCIDKWLRLHSSCPKCRHCLI 174 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp~C~H~FH--~~CI~~Wl~~~~~CP~CR~~l~ 174 (216)
..|+-|-..+..++..... -+..|| .+|+ .|-.|+.+|.
T Consensus 3 ~~C~~C~~~I~~~~~~v~a--~~~~wH~~~~CF--------~C~~C~~~L~ 43 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTY--NNFSWHASTECF--------LCSCCSKCLI 43 (65)
T ss_dssp EECTTTSSEECTTSCEEEE--TTEEEETTTTTS--------BCTTTCCBCT
T ss_pred CCCcCCCCeeccCceEEEE--CCCccCCCCCCE--------ECCCCCCcCC
Confidence 4699999888764333222 578999 8884 4667777764
No 214
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=32.35 E-value=1.1e+02 Score=20.20 Aligned_cols=27 Identities=15% Similarity=0.376 Sum_probs=15.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHH
Q 035743 47 NLDSSVLLVLSVLLCALICSLGLNFLI 73 (216)
Q Consensus 47 ~~~~~viiii~ill~~li~~l~l~~i~ 73 (216)
.++.--+=+-+++++++++++++.++.
T Consensus 10 ~YDY~tLRiGGLifA~vLfi~GI~iil 36 (72)
T 2jo1_A 10 TYDYQSLQIGGLVIAGILFILGILIVL 36 (72)
T ss_dssp GCSTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHhhccchHHHHHHHHHHHHHHH
Confidence 344555555556666666666665544
No 215
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=31.70 E-value=74 Score=18.08 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 035743 50 SSVLLVLSVLLCALICSLGLNFLI 73 (216)
Q Consensus 50 ~~viiii~ill~~li~~l~l~~i~ 73 (216)
..+.+.+++.+.+++++++-.+++
T Consensus 6 l~malt~i~gl~vif~~lg~tfly 29 (40)
T 2l9u_A 6 LTMALTVIAGLVVIFMMLGGTFLY 29 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCceeEE
Confidence 445555555555555555544443
No 216
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=31.68 E-value=23 Score=24.16 Aligned_cols=40 Identities=23% Similarity=0.572 Sum_probs=23.5
Q ss_pred cccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCcccc
Q 035743 126 AECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLI 174 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (216)
..|+.|-.++..+........|+- . +.....||-|.++|.
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~C~~--------~-~~~~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERNGDTAHCETCAK--------D-FSLQALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEECSSEEECTTTCC--------E-EEEEEECSSSCSCCC
T ss_pred CCCCCCCCccccCCCceECccccc--------c-CCCcccCcchhhHHH
Confidence 578999888765443333333432 2 233347888887773
No 217
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=31.37 E-value=28 Score=26.80 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=14.8
Q ss_pred eeecCCCCCccCccchHHHhccCCCCccCCc
Q 035743 141 VRLLPKCNHGFHVRCIDKWLRLHSSCPKCRH 171 (216)
Q Consensus 141 ~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~ 171 (216)
.-+++.|||++-. .....||+|..
T Consensus 138 ~~~C~~CG~i~~~-------~~p~~CP~Cg~ 161 (170)
T 3pwf_A 138 VYICPICGYTAVD-------EAPEYCPVCGA 161 (170)
T ss_dssp EEECTTTCCEEES-------CCCSBCTTTCC
T ss_pred eeEeCCCCCeeCC-------CCCCCCCCCCC
Confidence 3345568888752 12337999964
No 218
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.97 E-value=49 Score=20.61 Aligned_cols=37 Identities=24% Similarity=0.591 Sum_probs=26.2
Q ss_pred cccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCcccc
Q 035743 126 AECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLI 174 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (216)
..|+-|-..+.. +.+.. -+..||.+|+ .|-.|+..|.
T Consensus 6 ~~C~~C~~~I~~-~~~~a---~~~~~H~~CF--------~C~~C~~~L~ 42 (69)
T 2cur_A 6 SGCVKCNKAITS-GGITY---QDQPWHADCF--------VCVTCSKKLA 42 (69)
T ss_dssp CCCSSSCCCCCT-TCEEE---TTEEECTTTT--------BCTTTCCBCT
T ss_pred CCCcccCCEeCc-ceEEE---CccccccCcC--------EECCCCCCCC
Confidence 579999988864 33332 5789999885 4677777765
No 219
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=30.96 E-value=42 Score=23.53 Aligned_cols=28 Identities=14% Similarity=0.441 Sum_probs=14.2
Q ss_pred cccccccccccCCcceeecCCCCCccCccch
Q 035743 126 AECVICLSEFASGELVRLLPKCNHGFHVRCI 156 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI 156 (216)
..|+-|-..+...+.+.. -+..||.+|+
T Consensus 4 ~~C~~C~~~I~~~~~~~a---~~~~wH~~CF 31 (114)
T 1j2o_A 4 LTCGGCQQNIGDRYFLKA---IDQYWHEDCL 31 (114)
T ss_dssp BCBSSSCSCBCSSEEEEC---SSSEECTTTC
T ss_pred CCCcCCCCeeCCcEEEEE---CchhHHHhcC
Confidence 356666666554322221 4556666553
No 220
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=30.12 E-value=16 Score=20.75 Aligned_cols=10 Identities=40% Similarity=0.959 Sum_probs=5.2
Q ss_pred CCccCCcccc
Q 035743 165 SCPKCRHCLI 174 (216)
Q Consensus 165 ~CP~CR~~l~ 174 (216)
.||.|...+.
T Consensus 7 iCP~C~~~l~ 16 (34)
T 3mjh_B 7 ICPQCMKSLG 16 (34)
T ss_dssp ECTTTCCEES
T ss_pred CCcHHHHHcC
Confidence 3555555544
No 221
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=29.99 E-value=13 Score=26.21 Aligned_cols=22 Identities=23% Similarity=0.089 Sum_probs=17.0
Q ss_pred HHHhccCCCCccCCccccchhh
Q 035743 157 DKWLRLHSSCPKCRHCLIETCE 178 (216)
Q Consensus 157 ~~Wl~~~~~CP~CR~~l~~~~~ 178 (216)
+.||..-..||+|+.+|.....
T Consensus 2 d~~LLdILaCP~cK~pL~l~~~ 23 (97)
T 2k5r_A 2 DRKLLHLLCSPDTRQPLSLLES 23 (97)
T ss_dssp CTTTCSSCCCCTTSSCCEECCH
T ss_pred ChHHhhheECCCCCCccccccc
Confidence 5677777889999998876443
No 222
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.45 E-value=39 Score=21.79 Aligned_cols=37 Identities=24% Similarity=0.608 Sum_probs=26.0
Q ss_pred cccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCcccc
Q 035743 126 AECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLI 174 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (216)
..|+.|-+.+... .+ .. -+..||.+|+ .|-.|+..|.
T Consensus 16 ~~C~~C~~~I~~~-~v--~a-~~~~~H~~CF--------~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQG-GV--TY-RDQPWHRECL--------VCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCSC-CE--ES-SSSEECTTTC--------BCSSSCCBCT
T ss_pred CcCCCCCCEecCc-EE--EE-CCchhhhhhC--------CcccCCCcCC
Confidence 5799999888653 22 22 6789999885 4667777764
No 223
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=28.89 E-value=38 Score=23.37 Aligned_cols=24 Identities=33% Similarity=0.247 Sum_probs=12.6
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHH
Q 035743 43 AINKNLDSSVLLVLSVLLCALICS 66 (216)
Q Consensus 43 ~~~~~~~~~viiii~ill~~li~~ 66 (216)
.+.-..++.+++++++++++++++
T Consensus 54 s~GlKV~P~~VLv~sl~FIa~Vil 77 (87)
T 2ww9_C 54 ANGFRVDSLVVLFLSVGFIFSVIA 77 (87)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHH
T ss_pred CCceEEcCeeehhhHHHHHHHHHH
Confidence 344566677777766666555543
No 224
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=28.57 E-value=36 Score=26.27 Aligned_cols=31 Identities=19% Similarity=0.330 Sum_probs=22.8
Q ss_pred CcccccccccccCCcceeecCCCCCccCccchHH
Q 035743 125 DAECVICLSEFASGELVRLLPKCNHGFHVRCIDK 158 (216)
Q Consensus 125 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~ 158 (216)
...|+.|-..+..++.+.. -+..||.+|+.-
T Consensus 115 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~CF~C 145 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVIG---AGKSWHKSCFRC 145 (192)
T ss_dssp CEECTTTSCEECSSSCEEE---TTEEECTTTCBC
T ss_pred CCcCCCCCCEecCcEEEec---CCCccchhcCCc
Confidence 3579999998877665543 578899988543
No 225
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=28.42 E-value=35 Score=20.55 Aligned_cols=8 Identities=38% Similarity=1.086 Sum_probs=6.2
Q ss_pred CCccCCcc
Q 035743 165 SCPKCRHC 172 (216)
Q Consensus 165 ~CP~CR~~ 172 (216)
.||+|...
T Consensus 32 ~CP~Cg~~ 39 (46)
T 6rxn_A 32 CCPVCGVS 39 (46)
T ss_dssp BCTTTCCB
T ss_pred cCcCCCCc
Confidence 79999753
No 226
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=28.16 E-value=15 Score=26.16 Aligned_cols=13 Identities=38% Similarity=1.083 Sum_probs=11.1
Q ss_pred ccCccchHHHhcc
Q 035743 150 GFHVRCIDKWLRL 162 (216)
Q Consensus 150 ~FH~~CI~~Wl~~ 162 (216)
.||..|+..|++.
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999854
No 227
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=27.82 E-value=15 Score=26.07 Aligned_cols=12 Identities=42% Similarity=1.049 Sum_probs=10.7
Q ss_pred ccCccchHHHhc
Q 035743 150 GFHVRCIDKWLR 161 (216)
Q Consensus 150 ~FH~~CI~~Wl~ 161 (216)
.||..|+..|++
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 599999999985
No 228
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.36 E-value=41 Score=21.81 Aligned_cols=38 Identities=21% Similarity=0.596 Sum_probs=26.5
Q ss_pred CcccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCcccc
Q 035743 125 DAECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLI 174 (216)
Q Consensus 125 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 174 (216)
...|+-|-..+.+ ..+.. -+..||.+|+ .|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~CF--------~C~~C~~~L~ 52 (81)
T 2dlo_A 15 LEKCATCSQPILD-RILRA---MGKAYHPGCF--------TCVVCHRGLD 52 (81)
T ss_dssp CCBCTTTCCBCCS-CCEEE---TTEEECTTTC--------BCSSSCCBCT
T ss_pred CCccccCCCeecc-eeEEE---CCccccHHhc--------CcccCCCccC
Confidence 3679999988873 32222 6789999884 4777877765
No 229
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=26.06 E-value=13 Score=33.43 Aligned_cols=45 Identities=18% Similarity=0.383 Sum_probs=31.2
Q ss_pred cccccccccCCcceeecCCCCCccCccchHHHhc-----cCCCCccCCcc
Q 035743 128 CVICLSEFASGELVRLLPKCNHGFHVRCIDKWLR-----LHSSCPKCRHC 172 (216)
Q Consensus 128 C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-----~~~~CP~CR~~ 172 (216)
.-||-..+..+...+.+..|..-||..|+.-=-. .+-.||.|+..
T Consensus 7 yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~ 56 (447)
T 3kv4_A 7 YCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVL 56 (447)
T ss_dssp ETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHH
T ss_pred EEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccc
Confidence 4488877654555666777999999999963211 33479999764
No 230
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=26.06 E-value=24 Score=26.35 Aligned_cols=25 Identities=28% Similarity=0.687 Sum_probs=17.8
Q ss_pred cccccccccccCCc-ceeecCCCCCc
Q 035743 126 AECVICLSEFASGE-LVRLLPKCNHG 150 (216)
Q Consensus 126 ~~C~ICl~~~~~~~-~~~~lp~C~H~ 150 (216)
..|+-|-++|.-.+ ..-++|.|+|-
T Consensus 28 P~CP~C~seytYeDg~l~vCPeC~hE 53 (138)
T 2akl_A 28 PPCPQCNSEYTYEDGALLVCPECAHE 53 (138)
T ss_dssp CCCTTTCCCCCEECSSSEEETTTTEE
T ss_pred CCCCCCCCcceEecCCeEECCccccc
Confidence 57999999986332 34567777776
No 231
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=25.70 E-value=12 Score=31.86 Aligned_cols=48 Identities=19% Similarity=0.364 Sum_probs=29.5
Q ss_pred CCcccccccccccCCcceee-cCCCC--CccCccchHHHhccCCCCccCCcc
Q 035743 124 LDAECVICLSEFASGELVRL-LPKCN--HGFHVRCIDKWLRLHSSCPKCRHC 172 (216)
Q Consensus 124 ~~~~C~ICl~~~~~~~~~~~-lp~C~--H~FH~~CI~~Wl~~~~~CP~CR~~ 172 (216)
....|+||-..-... .++. -..=| |.+|.-|=..|--.+..||.|-..
T Consensus 181 ~~~~CPvCGs~P~~s-~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAG-MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEE-EEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred cCCCCCCCCCcCcee-EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 347899998764332 1111 00022 556667888897778889999654
No 232
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.54 E-value=62 Score=20.74 Aligned_cols=38 Identities=16% Similarity=0.434 Sum_probs=26.6
Q ss_pred cccccccccccCCcceeecCCCCCccCccchHHHhccCCCCccCCccccc
Q 035743 126 AECVICLSEFASGELVRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHCLIE 175 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 175 (216)
..|+.|-..+.+ +.+.. -+..||.+|+ .|-.|+..|..
T Consensus 16 ~~C~~C~~~I~~-~~v~a---~~~~~H~~CF--------~C~~C~~~L~~ 53 (80)
T 1x3h_A 16 PKCGGCNRPVLE-NYLSA---MDTVWHPECF--------VCGDCFTSFST 53 (80)
T ss_dssp CBCTTTCCBCCS-SCEEE---TTEEECTTTC--------BCSSSCCBSCS
T ss_pred CccccCCCeecc-eeEEE---CCCeEecCcC--------ChhhCCCCCCC
Confidence 579999988875 33332 5788999884 46777777653
No 233
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=24.53 E-value=42 Score=26.53 Aligned_cols=25 Identities=24% Similarity=0.366 Sum_probs=15.7
Q ss_pred eeecCCCCCccCccchHHHhccCCCCccCCcc
Q 035743 141 VRLLPKCNHGFHVRCIDKWLRLHSSCPKCRHC 172 (216)
Q Consensus 141 ~~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~ 172 (216)
.-+++.|||++-. . ....||+|..+
T Consensus 171 ~~~C~~CG~i~~g--~-----~p~~CP~C~~~ 195 (202)
T 1yuz_A 171 FHLCPICGYIHKG--E-----DFEKCPICFRP 195 (202)
T ss_dssp EEECSSSCCEEES--S-----CCSBCTTTCCB
T ss_pred EEEECCCCCEEcC--c-----CCCCCCCCCCC
Confidence 4456669998542 1 22479999753
No 234
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=24.21 E-value=42 Score=23.69 Aligned_cols=28 Identities=25% Similarity=0.553 Sum_probs=18.4
Q ss_pred CCCCCccCccchHH------Hhcc-----CCCCccCCcc
Q 035743 145 PKCNHGFHVRCIDK------WLRL-----HSSCPKCRHC 172 (216)
Q Consensus 145 p~C~H~FH~~CI~~------Wl~~-----~~~CP~CR~~ 172 (216)
..|++-||..|+.- -+.. ...||.|...
T Consensus 6 ~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~ 44 (140)
T 2ku7_A 6 GKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 44 (140)
T ss_dssp SCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTT
T ss_pred ccCCCccCCcccccCHHHHHHHhhccccceeeCcccccc
Confidence 35999999999621 1112 3579999653
No 235
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=22.99 E-value=1.3e+02 Score=18.52 Aligned_cols=24 Identities=8% Similarity=0.126 Sum_probs=17.0
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHH
Q 035743 44 INKNLDSSVLLVLSVLLCALICSL 67 (216)
Q Consensus 44 ~~~~~~~~viiii~ill~~li~~l 67 (216)
+.-..++..++++++++.+++.++
T Consensus 24 ~giKi~P~~Vl~~si~~i~~V~~L 47 (53)
T 1rh5_C 24 SKIRVKPEHVIGVTVAFVIIEAIL 47 (53)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CccccCCeehhhhHHHHHHHHHHH
Confidence 345777888888877777766554
No 236
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=22.26 E-value=54 Score=23.14 Aligned_cols=39 Identities=26% Similarity=0.557 Sum_probs=21.9
Q ss_pred cccccccccccCCcceeecCCCCCccC--ccchHHHhccCCCCccCCcccc
Q 035743 126 AECVICLSEFASGELVRLLPKCNHGFH--VRCIDKWLRLHSSCPKCRHCLI 174 (216)
Q Consensus 126 ~~C~ICl~~~~~~~~~~~lp~C~H~FH--~~CI~~Wl~~~~~CP~CR~~l~ 174 (216)
..|+.|-..+..++.+... -++.|| .+| -.|-.|+..|.
T Consensus 64 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~~~C--------F~C~~C~~~l~ 104 (126)
T 2xqn_T 64 VVCQGCHNAIDPEVQRVTY--NNFSWHASTEC--------FLCSCCSKCLI 104 (126)
T ss_dssp CBCTTTCSBCCTTSCEEEE--TTEEEESSTTT--------SBCTTTCCBCT
T ss_pred ccCcccCCcCCcCceEEEC--CCCEeeCCCCC--------cCcCCCCCccC
Confidence 4577777766654433222 567777 666 33556665554
No 237
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=21.52 E-value=1e+02 Score=17.31 Aligned_cols=6 Identities=17% Similarity=0.384 Sum_probs=2.2
Q ss_pred HHHHHH
Q 035743 71 FLIRYI 76 (216)
Q Consensus 71 ~i~r~~ 76 (216)
+++|=.
T Consensus 19 l~iRPQ 24 (37)
T 2rdd_B 19 MILRPQ 24 (37)
T ss_dssp HTHHHH
T ss_pred HHhhhH
Confidence 333333
No 238
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.10 E-value=35 Score=22.29 Aligned_cols=46 Identities=22% Similarity=0.400 Sum_probs=26.6
Q ss_pred CcccccccccccCCcceeecCCCC---CccCccchHHHh--ccCCCCccCCccc
Q 035743 125 DAECVICLSEFASGELVRLLPKCN---HGFHVRCIDKWL--RLHSSCPKCRHCL 173 (216)
Q Consensus 125 ~~~C~ICl~~~~~~~~~~~lp~C~---H~FH~~CI~~Wl--~~~~~CP~CR~~l 173 (216)
...| ||-... .+ ..+....|+ .-||..|+..=- ..+-.||.|+...
T Consensus 6 ~~yC-~C~~~~-~g-~MI~CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 6 SGYC-ICNQVS-YG-EMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CCCS-TTSCCC-CS-SEECCSCTTCSCCCEEHHHHTCSSCCSSCCCCHHHHHHH
T ss_pred CeEE-EcCCCC-CC-CEeEeCCCCCCccCCcccccccCcCCCCCEECCCCCccc
Confidence 3456 586652 33 344444453 789999998321 1123599997554
Done!