Query 035744
Match_columns 653
No_of_seqs 125 out of 658
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 06:01:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035744.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035744hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1278 Endosomal membrane pro 100.0 4E-199 9E-204 1589.3 55.1 607 5-653 12-628 (628)
2 KOG1277 Endosomal membrane pro 100.0 4E-156 1E-160 1227.4 45.3 570 6-653 11-593 (593)
3 PF02990 EMP70: Endomembrane p 100.0 5E-149 1E-153 1253.2 42.2 510 52-611 1-521 (521)
4 PF12670 DUF3792: Protein of u 87.8 4.9 0.00011 37.0 9.8 79 352-437 4-82 (116)
5 PF02990 EMP70: Endomembrane p 73.3 1.4E+02 0.0031 34.5 17.1 123 513-643 334-481 (521)
6 PF11368 DUF3169: Protein of u 72.9 65 0.0014 33.4 13.0 38 428-472 200-237 (248)
7 KOG2568 Predicted membrane pro 70.9 20 0.00044 41.1 9.2 59 345-403 264-324 (518)
8 KOG0569 Permease of the major 67.1 57 0.0012 37.6 11.9 67 342-409 260-332 (485)
9 PF06570 DUF1129: Protein of u 59.0 75 0.0016 32.0 10.0 45 366-413 90-134 (206)
10 PF06570 DUF1129: Protein of u 54.3 45 0.00099 33.6 7.5 130 495-645 59-200 (206)
11 PF13347 MFS_2: MFS/sugar tran 54.2 98 0.0021 34.0 10.8 75 334-414 212-288 (428)
12 PF03806 ABG_transport: AbgT p 51.9 1.1E+02 0.0025 35.3 10.8 93 385-483 293-402 (502)
13 KOG1278 Endosomal membrane pro 44.4 6E+02 0.013 30.0 16.0 119 516-641 402-544 (628)
14 PRK11339 abgT putative aminobe 42.9 84 0.0018 36.4 8.1 51 359-409 265-326 (508)
15 TIGR00901 2A0125 AmpG-related 39.2 4.7E+02 0.01 27.4 12.8 17 398-414 257-273 (356)
16 COG2271 UhpC Sugar phosphate p 38.3 2.4E+02 0.0053 32.1 10.5 28 456-483 345-372 (448)
17 TIGR02973 nitrate_rd_NapE peri 35.5 40 0.00088 25.8 2.7 32 421-452 5-36 (42)
18 PF09605 Trep_Strep: Hypotheti 35.4 1.8E+02 0.0039 29.0 8.2 23 464-486 157-179 (186)
19 PF06609 TRI12: Fungal trichot 34.4 8.6E+02 0.019 28.9 15.6 63 357-431 143-205 (599)
20 KOG2290 Rhomboid family protei 33.7 2.8E+02 0.0061 31.7 9.9 28 399-427 572-602 (652)
21 PLN02715 lipid phosphate phosp 31.9 7.2E+02 0.016 27.3 13.7 29 576-604 181-210 (327)
22 PF08055 Trp_leader1: Tryptoph 31.7 18 0.0004 22.2 0.3 8 574-581 6-13 (18)
23 COG5393 Predicted membrane pro 31.7 53 0.0011 30.6 3.4 25 380-404 77-102 (131)
24 COG3086 RseC Positive regulato 31.1 99 0.0021 30.0 5.2 66 348-423 71-136 (150)
25 PF10539 Dev_Cell_Death: Devel 30.2 28 0.0006 33.0 1.4 77 41-126 31-110 (130)
26 TIGR00894 2A0114euk Na(+)-depe 30.1 1.8E+02 0.004 32.1 8.2 27 384-410 299-325 (465)
27 PF06796 NapE: Periplasmic nit 30.0 45 0.00097 27.1 2.3 34 419-452 16-49 (56)
28 TIGR02972 TMAO_torE trimethyla 28.9 48 0.001 26.0 2.2 34 419-452 8-41 (47)
29 PRK00293 dipZ thiol:disulfide 28.8 6.2E+02 0.013 29.7 12.4 27 457-483 324-350 (571)
30 TIGR00895 2A0115 benzoate tran 28.5 1.5E+02 0.0032 31.1 6.8 25 390-414 289-313 (398)
31 TIGR00893 2A0114 d-galactonate 27.3 3.5E+02 0.0076 27.9 9.3 21 394-414 259-279 (399)
32 PLN00028 nitrate transmembrane 26.4 1.7E+02 0.0036 32.9 7.1 33 382-414 288-320 (476)
33 KOG3088 Secretory carrier memb 25.9 5.9E+02 0.013 27.5 10.3 65 584-648 195-268 (313)
34 PF05297 Herpes_LMP1: Herpesvi 25.8 23 0.00049 37.8 0.0 33 407-442 126-158 (381)
35 MTH00086 CYTB cytochrome b; Pr 24.9 2.1E+02 0.0045 31.7 7.2 101 540-641 18-134 (355)
36 COG2814 AraJ Arabinose efflux 24.8 1E+03 0.022 26.7 12.7 67 342-412 206-273 (394)
37 MTH00053 CYTB cytochrome b; Pr 22.8 2.2E+02 0.0048 31.8 7.0 100 540-640 30-145 (381)
38 PRK12307 putative sialic acid 22.8 4.9E+02 0.011 28.0 9.7 24 391-414 271-294 (426)
39 MTH00033 CYTB cytochrome b; Pr 22.4 1.7E+02 0.0038 32.6 6.0 98 540-641 26-142 (383)
40 TIGR00902 2A0127 phenyl propri 22.3 4.4E+02 0.0096 28.3 9.2 69 341-414 199-268 (382)
41 MTH00119 CYTB cytochrome b; Pr 21.9 2.3E+02 0.005 31.6 6.9 98 540-641 30-146 (380)
42 TIGR00805 oat sodium-independe 21.9 2.8E+02 0.0061 32.8 8.0 30 380-409 66-95 (633)
43 cd00284 Cytochrome_b_N Cytochr 21.8 1.8E+02 0.0039 29.5 5.6 99 540-641 21-139 (200)
44 COG4956 Integral membrane prot 21.7 4.2E+02 0.0092 29.0 8.4 90 388-487 45-134 (356)
45 PF12271 Chs3p: Chitin synthas 20.5 1.1E+03 0.024 25.5 16.4 123 359-483 118-246 (293)
46 PF04423 Rad50_zn_hook: Rad50 20.5 57 0.0012 25.7 1.3 22 100-122 23-44 (54)
47 PLN02776 prenyltransferase 20.0 1.2E+03 0.026 25.7 12.7 24 334-359 64-87 (341)
No 1
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-199 Score=1589.33 Aligned_cols=607 Identities=54% Similarity=1.006 Sum_probs=575.6
Q ss_pred HHHHHHHHHhhcccceeeecCCCCCCCCCCCCcEEEEEeecccCCCCcccccccCCCCCCCCCccCccCCccchhcCCcc
Q 035744 5 WIWVLFVFFFLQSSSFGFYLPGSYPHKHVVGDPLSVKVNSITSIDTEMPFSYYSLPFCKPQEGVKDSAENLGELLMGDRI 84 (653)
Q Consensus 5 ~~~~~~~~~~~~~~~~~f~~pg~~p~~Y~~Gd~V~v~vNkl~s~~~~~~Y~Yy~lpfC~p~~~~~~~~~slGevL~Gdr~ 84 (653)
++++++.++. +.+.|||+||++|.+|++||+++++|||++|.++|.||+||++|||+|+ ++++++|||||+|+|||+
T Consensus 12 ~~~ll~~~~~--~~~~~FylpG~aPv~f~~gd~i~l~vnklts~~t~lpY~YY~~~Fc~p~-~i~~~~EnLGeVl~GDRi 88 (628)
T KOG1278|consen 12 LALLLVSLLL--STSSAFYLPGVAPVNFCSGDPIELKVNKLTSSRTQLPYEYYSLPFCRPE-KIKKQSENLGEVLRGDRI 88 (628)
T ss_pred HHHHHHHHHH--hcccceecCCcCCccCCCCCceEEEEEEeeccccccCcccccccccCcc-ccCCcccchhceeccCcc
Confidence 4555555553 3378999999999999999999999999999999999999999999999 599999999999999999
Q ss_pred ccCCeEEEeccccccc-cccccCCCCHHHHHHHHHHHHhcceEEEEEeccceEEEe--ccCCeeeeeccccccee---cc
Q 035744 85 ENSPYRFKMFTNETDI-FLCKTDPLSKDNFELLKRRIDEMYQVNLILDNLPAIRYT--KKDGFLLRWTGFPVGVK---YQ 158 (653)
Q Consensus 85 ~~S~y~i~f~~~~~~c-~lC~~~~~t~~~~~~l~~~I~~~Y~~~~~iD~LPv~~~~--~~~~~~~y~~GfplG~~---~~ 158 (653)
+||||+++|++|++ | .+|+. ++++|+.+.++|+|+++|++||++||||++... .++++.+|.+|||+|++ +.
T Consensus 89 ~nSPy~~~m~e~~~-C~~lC~~-k~~~~~~~~l~~~I~~~Y~v~wivDnlPva~~~~~~~~~~~~y~~GfplG~~~~~~~ 166 (628)
T KOG1278|consen 89 ENSPYKFKMLENQP-CETLCAT-KLDKEDAKLLKKLIREGYVVNWIVDNLPVATRYERSDDGKVYYGTGFPLGFKGPKDE 166 (628)
T ss_pred cCCCceEecccCCc-chhhhcc-cCCHHHHHHHHHHHhhccEeeeeecCCceeEEEeecCCCceEeccCccceeccCCCc
Confidence 99999999999999 9 99998 899999999999999999999999999988643 24588899999999998 56
Q ss_pred ceeEEeeeEEEEEEEecccccchhhhcccCCCcccccCccCCCCCCeEEEEEEEEeccccCCchhhhhccccCCCCCCCC
Q 035744 159 DAYYVFNHLKFKVLVHKYEEANVARVMGTGDAADVFPTKVNDDVPGYMVVGFEVVPCSVLHNADAVKKSKLYDKYPNPIK 238 (653)
Q Consensus 159 ~~~yL~NH~~f~I~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IVgfeV~P~Sv~~~~~~~~~~~~~~~~~~~~~ 238 (653)
+++|++||++|+|+||+.++ ++||||||||+|+|++|..+..++.+ + ..+
T Consensus 167 ~~~y~~NHl~~~i~yH~~~~------------------------~~~riVgfeV~P~Si~~~~~~~~~~~-~-----~~~ 216 (628)
T KOG1278|consen 167 DKYYLHNHLDFVIRYHRDDN------------------------DKYRIVGFEVKPVSIKHEHEKGDSKN-S-----LPT 216 (628)
T ss_pred cceeEeeeEEEEEEEEecCC------------------------CceEEEEEEEEeeeeecccCCCcccc-c-----CCc
Confidence 89999999999999999765 67999999999999988654311111 1 246
Q ss_pred CCCCCCCCCCCCCcc--EEEEEEEEEeecCCCCcchhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 035744 239 CDSNVVSMPIKEGQP--IVFTYEVNFDLSDIKWPSRWDAYLKMEGSKVHWFSILNSLMVITFLAGIVLVIFLRTVRRDLT 316 (653)
Q Consensus 239 c~~~~~~~~~~~~~~--i~fTYSV~w~~s~~~w~~Rwd~yl~~~~~~ihw~SIiNS~iivl~L~~~v~~Il~R~lr~D~~ 316 (653)
|+.+++++.++++++ +.|||||+|+|||++|++|||.||++++.+||||||+||++||++|+++|++|++||||||++
T Consensus 217 c~~~~~~~~~~e~~~~~i~fTYsV~f~esdi~WasRWD~yL~m~~~qIhWfSIiNSlvIVlfLSgiv~mI~lRtl~rDia 296 (628)
T KOG1278|consen 217 CSIPEKPLELDEGEETEIVFTYSVKFEESDIKWASRWDYYLHMEDVQIHWFSIINSLVIVLFLSGIVAMIMLRTLYRDIA 296 (628)
T ss_pred ccCCCCccccCCCCceEEEEEEEEEEEeccCcchhhHHHHhcCCCCceEEEehhhhHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 776667767777554 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcHHHHhhhhhhcccceEEeccccCCCCCcchhhhhhccchHHHHHHHHHHHHHHhcccCCCCcchHHHHHHHHHH
Q 035744 317 RYEELDKEAQAQMNEELSGWKLVVGDVFRAPNNAGLLCIMVGNGVQILGMAVVTIFFAALGFMSPASRGTLITGMLFIYM 396 (653)
Q Consensus 317 ~Yn~~~~~~~~~~~ee~~GWKlvhgDVFR~P~~~~lLs~lvG~G~Qll~~~~~~l~~a~lg~lsp~~rg~l~t~~i~~y~ 396 (653)
|||++|.|||+| || +|||+|||||||||+++++||++||+|+|+++|+++++++|++|+++|++||+|+|+++++|+
T Consensus 297 rYne~d~~~d~~--Ee-~GWKLVhGDVFR~P~~~~lLsv~vGsGvQ~l~M~~vti~fA~lGflSPs~RGsLmT~~~~l~v 373 (628)
T KOG1278|consen 297 RYNELDLDDDAQ--EE-SGWKLVHGDVFRPPRNSMLLSVLVGSGVQLLGMILVTIFFACLGFLSPSSRGSLMTAMVLLFV 373 (628)
T ss_pred hhccccchhhhh--hh-cceEEeecccccCCCCCeEEEEEeccChhhhHHHHHHHHHHHhccCCccccccHHHHHHHHHH
Confidence 999999988887 89 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhHhhHhhhcCCCCchhhHHHhhhhhhhhHHHHHHHHHHHHHHHhhcCCCCcChHHHHHHHHHHHHhhhhhh
Q 035744 397 ILGVAAGYVAVRLWRTIGCGDLKGWISVAWKAACFFPGIAFLILTTLNFLLWGSHSTGAIPFSLFVILLLLWFCISVPLT 476 (653)
Q Consensus 397 ~~~~iaGyvS~~lyk~~~~g~~~~Wk~~~~lt~~~~P~~~~~i~~~lN~i~~~~~Ss~aipf~ti~~l~~lw~~vs~PL~ 476 (653)
++|++|||+|+|+||+++ |++ ||+++++|++++||++|++++++|+++|+++||+|+||+|++++++||++||+||+
T Consensus 374 ~~G~~agY~s~rlyk~~~-g~~--wk~~~~lta~l~PGivf~~~f~lN~~lW~~~SSgAvPF~T~~~ll~LwF~isVPLs 450 (628)
T KOG1278|consen 374 FMGFVAGYVSARLYKTFK-GRE--WKRNAILTAFLFPGIVFAIFFVLNFFLWGKHSSGAVPFSTMVALLFLWFGISVPLS 450 (628)
T ss_pred HHHHhhhhhhhhhHhhhc-CCc--chhhHHhhhhhcchHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHhhhhHH
Confidence 999999999999999999 999 99999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCCCCCCCcccCCCCCCCCCCC--CCcchhhhccccccchhhhHHHHHHHHhhcccchhHHHHHHHHHHHHH
Q 035744 477 LFGGYLGAKAPHIEYPVRTNQIPREIPAQK--YPSWLLVLGAGTLPFGTLFIELFFIMSSIWMGRVYYVFGFLLIVLVLL 554 (653)
Q Consensus 477 ~iG~~~g~k~~~~~~P~r~n~ipR~IP~qp--~~~~~~~l~~GilPF~ai~iEl~fi~~SlW~~~~yy~fgfL~i~~iil 554 (653)
++|+++|+|++++|+|+||||||||||.|| +++++.+++||++||++|||||+||++|+|.||+||+|||||++++||
T Consensus 451 f~G~y~g~kk~~~e~PvrTNqIpRqIP~q~~y~~~~~~ili~GilPFg~ifIELfFI~~SiW~~qfYY~FGFLFlvfiiL 530 (628)
T KOG1278|consen 451 FVGGYFGFKKPAIEHPVRTNQIPRQIPEQPWYLNPIPSILIAGILPFGAIFIELFFILSSIWLNQFYYMFGFLFLVFIIL 530 (628)
T ss_pred HhhHHhhccCCCCCCCcccCCCcccCCCCccccchhhHHHhhcccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcccCCcceeehhhhccchhHHHHHHHHHHhhhhhccccCCcchhhhHHHHHHHHHHHHHHHhhhH
Q 035744 555 VVVCAEVSLVLTYMHLCVEDWKWWWKSFFASGSVAIYIFLYSINYLVFDLRNLSGPVSATLYLGYSLFMVLAIMLATGTV 634 (653)
Q Consensus 555 ii~~a~vsI~~tY~~L~~Edy~WwWrSF~~~gs~~~y~flYsi~y~~~~~~~~~g~~~~~lyf~Ys~l~s~~~~l~~Gti 634 (653)
+++|+|+||++||+|||+||||||||||++||++|+|+|+||++|+++|+ +++|++++++|||||++++++++|+||||
T Consensus 531 vvtcaeisIvl~Yf~LC~Edy~WwWRsF~~sG~~avY~fiYsi~Y~~~kL-~i~g~~s~~LYfgYsli~~~~~~l~tGtI 609 (628)
T KOG1278|consen 531 VVTCAEISIVLTYFQLCAEDYNWWWRSFLTSGSSAVYVFIYSIFYFFTKL-EISGFVSAVLYFGYSLIISLLFFLLTGTI 609 (628)
T ss_pred HHHHHHHHHHHHHHHHHhcccceeeeeeeccCcchhhHHHHHHhhhheee-eecccchhHHHHHHHHHHHHHHHHHhccH
Confidence 99999999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCC
Q 035744 635 GFLSSFWFVHYLFSSVKLD 653 (653)
Q Consensus 635 Gflas~~FV~~IY~~iK~D 653 (653)
||+||+|||||||+++|+|
T Consensus 610 GF~a~~~Fv~kIYssvKiD 628 (628)
T KOG1278|consen 610 GFLAAFWFVRKIYSSVKID 628 (628)
T ss_pred HHHHHHHHHHHHhhheecC
Confidence 9999999999999999998
No 2
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.5e-156 Score=1227.41 Aligned_cols=570 Identities=32% Similarity=0.688 Sum_probs=524.8
Q ss_pred HHHHHHHHhhcccceeeecCC-CCCCCCCCCCcEEEEEeecccC-CCCcccccccCCCCCCCC-CccCccCCccchhcCC
Q 035744 6 IWVLFVFFFLQSSSFGFYLPG-SYPHKHVVGDPLSVKVNSITSI-DTEMPFSYYSLPFCKPQE-GVKDSAENLGELLMGD 82 (653)
Q Consensus 6 ~~~~~~~~~~~~~~~~f~~pg-~~p~~Y~~Gd~V~v~vNkl~s~-~~~~~Y~Yy~lpfC~p~~-~~~~~~~slGevL~Gd 82 (653)
.|++++|+.+ .+--.++ ...|.|++||+|++++||++|+ ||||+|.||+||||.++. ++++++|+|||+|.||
T Consensus 11 l~l~lLll~~----g~~~~~ade~dh~Yk~~e~VvLw~NkVGPyhNpqETY~YfsLPfC~g~~~~i~hk~etLGEvL~G~ 86 (593)
T KOG1277|consen 11 LLLPLLLLSL----GTGLVRADESDHRYKDGEEVVLWMNKVGPYHNPQETYRYFSLPFCSGSKESISHKHETLGEVLQGD 86 (593)
T ss_pred HHHHHHHHHc----cCCcccccccccccccCCeeEEEEeccCCCCChhhhceeeccceecCCCcccchhhhhHHhhhCCc
Confidence 3555555531 1222234 5679999999999999999999 999999999999998432 5788999999999999
Q ss_pred ccccCCeEEEeccccccc-cccccCCCCHHHHHHHHHHHHhcceEEEEEeccceEEEecc-CCeeeeecccccceeccce
Q 035744 83 RIENSPYRFKMFTNETDI-FLCKTDPLSKDNFELLKRRIDEMYQVNLILDNLPAIRYTKK-DGFLLRWTGFPVGVKYQDA 160 (653)
Q Consensus 83 r~~~S~y~i~f~~~~~~c-~lC~~~~~t~~~~~~l~~~I~~~Y~~~~~iD~LPv~~~~~~-~~~~~y~~GfplG~~~~~~ 160 (653)
|++.|+|+++|+.|++ - ++|++ ++++++.+.++++|+++|++||++||||+|+..|+ ++++. .+++|
T Consensus 87 eL~~s~y~ikF~~~v~-~~v~C~~-~L~~e~v~~f~~AI~~~Yyfqmy~DdlPIwGfvGe~d~~k~---------~~~~k 155 (593)
T KOG1277|consen 87 ELEFSGYEIKFRDNVE-KEVYCEK-KLSEEKVKAFRYAIENDYYFQMYIDDLPIWGFVGEVDEDKL---------DNEGK 155 (593)
T ss_pred eeeecceeeeecccCC-ceeeehh-hcCHHHHHHHHHHHHhhheeeeeecCceeeeEeeeeccccC---------CCCCc
Confidence 9999999999999999 7 99999 99999999999999999999999999999998775 22221 13578
Q ss_pred eEEeeeEEEEEEEecccccchhhhcccCCCcccccCccCCCCCCeEEEEEEEEeccccCCchhhhhccccCCCCCCCCCC
Q 035744 161 YYVFNHLKFKVLVHKYEEANVARVMGTGDAADVFPTKVNDDVPGYMVVGFEVVPCSVLHNADAVKKSKLYDKYPNPIKCD 240 (653)
Q Consensus 161 ~yL~NH~~f~I~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IVgfeV~P~Sv~~~~~~~~~~~~~~~~~~~~~c~ 240 (653)
|||+||.+|.|.||++ |||.+.+.. |
T Consensus 156 y~L~thk~f~i~yn~d-----------------------------rii~vnlt~----~--------------------- 181 (593)
T KOG1277|consen 156 YYLYTHKKFEIGYNGD-----------------------------RIIDVNLTT----H--------------------- 181 (593)
T ss_pred eEEEEeeeEEEeecCc-----------------------------eEEEEEeee----c---------------------
Confidence 9999999999999986 899888763 1
Q ss_pred CCCCCCCCCCCccEEEEEEEEEeecCCCCcchhhhcccc--CCccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 035744 241 SNVVSMPIKEGQPIVFTYEVNFDLSDIKWPSRWDAYLKM--EGSKVHWFSILNSLMVITFLAGIVLVIFLRTVRRDLTRY 318 (653)
Q Consensus 241 ~~~~~~~~~~~~~i~fTYSV~w~~s~~~w~~Rwd~yl~~--~~~~ihw~SIiNS~iivl~L~~~v~~Il~R~lr~D~~~Y 318 (653)
.+.++.++..+++||||+|+++++++++|.|+|++. .+++||||||+||++.|+||+|+|++||+|+||||.+||
T Consensus 182 ---~~v~L~~~~~~~~tYsV~W~~t~v~f~~rfdkyld~~ff~h~IHWfSIfNSfmmVifLvGlvamILMRtLrnDyarY 258 (593)
T KOG1277|consen 182 ---GLVDLRPDKKLTFTYSVKWKETEVEFEKRFDKYLDPSFFPHRIHWFSIFNSFMMVIFLVGLVAMILMRTLRNDYARY 258 (593)
T ss_pred ---ccccCCCCCCCceEEEEEeeeccCcHHHHhHhhcccccccceeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 122345566899999999999999999999999974 478899999999999999999999999999999999999
Q ss_pred hhhcHHH---HhhhhhhcccceEEeccccCCCCCcchhhhhhccchHHHHHHHHHHHHHHhcccCCCCcchHHHHHHHHH
Q 035744 319 EELDKEA---QAQMNEELSGWKLVVGDVFRAPNNAGLLCIMVGNGVQILGMAVVTIFFAALGFMSPASRGTLITGMLFIY 395 (653)
Q Consensus 319 n~~~~~~---~~~~~ee~~GWKlvhgDVFR~P~~~~lLs~lvG~G~Qll~~~~~~l~~a~lg~lsp~~rg~l~t~~i~~y 395 (653)
+++|++. |.+++|| .|||+|||||||||+|+.|||+++|+|.|++..+++++++|.+|.+++. ||+++|++|++|
T Consensus 259 ~~dee~~d~~d~d~~~E-~GWK~vHgDVFR~p~~~~Lfsa~lGsG~Qlf~l~~~ii~~Alvg~fy~~-rGal~saaI~vY 336 (593)
T KOG1277|consen 259 AKDEEALDDMDRDDQEE-YGWKQVHGDVFRFPSHPLLFSAVLGSGAQLFTLVLIIIMLALVGVFYTE-RGALLSAAIVVY 336 (593)
T ss_pred ccchhhhcccccccccc-ccceeeecccccCCCccHHHHHHhccccchHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHH
Confidence 9876521 2223488 9999999999999999999999999999999999999999999999976 999999999999
Q ss_pred HHHhhhhhhhhHhhHhhhcCCCCchhhHHHhhhhhhhhHHHHHHHHHHHHHHHhhcCCCCcChHHHHHHHHHHHHhhhhh
Q 035744 396 MILGVAAGYVAVRLWRTIGCGDLKGWISVAWKAACFFPGIAFLILTTLNFLLWGSHSTGAIPFSLFVILLLLWFCISVPL 475 (653)
Q Consensus 396 ~~~~~iaGyvS~~lyk~~~~g~~~~Wk~~~~lt~~~~P~~~~~i~~~lN~i~~~~~Ss~aipf~ti~~l~~lw~~vs~PL 475 (653)
++++.++||+||.+|.++| |++ |.|++++|++++|+++++.++++|+++|.+++++|+||+|++.++++|++|..||
T Consensus 337 AlTs~i~GY~~gs~Y~r~g-G~~--Wik~m~lta~Lfp~~~~~t~~~~N~vai~y~at~AlPfgt~v~v~~iw~fv~~PL 413 (593)
T KOG1277|consen 337 ALTSPINGYVSGSFYARLG-GRR--WIKNMLLTASLFPVPVFGTAFLLNTVAIAYGATAALPFGTIVVVLLIWLFVISPL 413 (593)
T ss_pred Hhcccccccccceeeehhc-cHH--HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccccCccchHHHHHHHHHHhchH
Confidence 9999999999999999999 999 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccCC-CCCCCcccCCCCCCCCCCC--CCcchhhhccccccchhhhHHHHHHHHhhcccchhHHHHHHHHHHH
Q 035744 476 TLFGGYLGAKAP-HIEYPVRTNQIPREIPAQK--YPSWLLVLGAGTLPFGTLFIELFFIMSSIWMGRVYYVFGFLLIVLV 552 (653)
Q Consensus 476 ~~iG~~~g~k~~-~~~~P~r~n~ipR~IP~qp--~~~~~~~l~~GilPF~ai~iEl~fi~~SlW~~~~yy~fgfL~i~~i 552 (653)
+++|++.|+++. +++.|||++++||+||++| ++|.+.+++||+|||++||||+|||++|.|.+++||+|||++++++
T Consensus 414 ~~~G~i~GkN~~~~~~~PCR~~~~pR~Ip~~kWy~~~~~~~~~gG~LPFgsIfIEmYfIFtSfW~ykiYyvYgfm~lVf~ 493 (593)
T KOG1277|consen 414 TVLGGIAGKNRSGEFDAPCRTKAIPREIPPKKWYRSPLVIMLMGGFLPFGSIFIEMYFIFTSFWGYKIYYVYGFMFLVFV 493 (593)
T ss_pred HHcccccccccccCCCCCcccccCCCCCCCccccccchHHHHhhccCccchhhhhHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 999999998764 5679999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcccCCcceeehhhhccchhHHHHHHHHHHhhhhhccccCCcchhhhHHHHHHHHHHHHHHHhh
Q 035744 553 LLVVVCAEVSLVLTYMHLCVEDWKWWWKSFFASGSVAIYIFLYSINYLVFDLRNLSGPVSATLYLGYSLFMVLAIMLATG 632 (653)
Q Consensus 553 ilii~~a~vsI~~tY~~L~~Edy~WwWrSF~~~gs~~~y~flYsi~y~~~~~~~~~g~~~~~lyf~Ys~l~s~~~~l~~G 632 (653)
||+++++||||++|||||++||||||||||+++||+|+|+++||+|||++|+ +|+|+.|+.+|||||+++|.+++++||
T Consensus 494 IL~iVtvcvTIv~TYFlLnaEDyrW~WtSfls~~ST~~yvy~Ys~yYy~~kt-kMsG~fQTsfyFGYm~~f~~~lgim~G 572 (593)
T KOG1277|consen 494 ILLIVTVCVTIVLTYFLLNAEDYRWWWTSFLSAGSTALYVYLYSFYYYFFKT-KMSGLFQTSFYFGYMAVFCYALGLMCG 572 (593)
T ss_pred HHHHHHHHHHHHHhHhhhccccceeeeeeeeccccceeehhhhHHHHHhhhc-cccchhhhhhhhHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcccCC
Q 035744 633 TVGFLSSFWFVHYLFSSVKLD 653 (653)
Q Consensus 633 tiGflas~~FV~~IY~~iK~D 653 (653)
||||.++..||||||+++|+|
T Consensus 573 tigy~gt~~FVR~IY~nvK~d 593 (593)
T KOG1277|consen 573 TIGYVGTLLFVRKIYRNVKID 593 (593)
T ss_pred hHhhhHHHHHHHHHHhhccCC
Confidence 999999999999999999998
No 3
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=100.00 E-value=4.5e-149 Score=1253.24 Aligned_cols=510 Identities=48% Similarity=0.979 Sum_probs=483.2
Q ss_pred cccccccCCCCCCCCCccCccCCccchhcCCccccCCeEEEeccccccc-cccccCCCCHHHHHHHHHHHHhcceEEEEE
Q 035744 52 MPFSYYSLPFCKPQEGVKDSAENLGELLMGDRIENSPYRFKMFTNETDI-FLCKTDPLSKDNFELLKRRIDEMYQVNLIL 130 (653)
Q Consensus 52 ~~Y~Yy~lpfC~p~~~~~~~~~slGevL~Gdr~~~S~y~i~f~~~~~~c-~lC~~~~~t~~~~~~l~~~I~~~Y~~~~~i 130 (653)
+|||||+||||+|+++.+++++||||+|+|||+++|||+++|++|++ | .+|++ +++++|+++++++|+++|++||+|
T Consensus 1 l~Y~Yy~lPfC~P~~~~~~~~~slGevL~Gdr~~~S~y~i~f~~~~~-c~~lC~~-~l~~~~~~~l~~~I~~~Y~~~~~v 78 (521)
T PF02990_consen 1 LPYDYYDLPFCRPEEGIEHKSESLGEVLRGDRIQNSPYEIKFLQNVT-CKVLCKK-TLTKEDVKKLKEAIENNYRVEMYV 78 (521)
T ss_pred CCccccCCCCcCCCCccccccCCHHHHhccCceecCceEEEEecCcc-hhhccCc-cCCHHHHHHHHHHHHHhheeeEEe
Confidence 59999999999998548889999999999999999999999999999 9 99999 999999999999999999999999
Q ss_pred eccceEEEeccCC--eeeeecccccceeccceeEEeeeEEEEEEEecccccchhhhcccCCCcccccCccCCCCCCeEEE
Q 035744 131 DNLPAIRYTKKDG--FLLRWTGFPVGVKYQDAYYVFNHLKFKVLVHKYEEANVARVMGTGDAADVFPTKVNDDVPGYMVV 208 (653)
Q Consensus 131 D~LPv~~~~~~~~--~~~y~~GfplG~~~~~~~yL~NH~~f~I~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IV 208 (653)
||||+++..++.+ +..|..|+|+|.++++++|||||++|+|+||++++ +++|||
T Consensus 79 D~LP~~~~~~~~~~~~~~y~~G~~~g~~~~~~~~l~NH~~f~I~Yn~~~~------------------------~~~~IV 134 (521)
T PF02990_consen 79 DDLPIAGFIGSVDGCDKGYPIGFPLGFKDDNKYYLYNHLDFTIRYNQESN------------------------GDYRIV 134 (521)
T ss_pred cCceEEEEecccCCcceecCCCcccCcccCCcceeEeEEEEEEEEECCCC------------------------CceEEE
Confidence 9999999776533 47788999999998999999999999999998765 668999
Q ss_pred EEEEEeccccCCchhhhhccccCCCCCCCCCCC-CCCCCCCCCCc---cEEEEEEEEEeecCCCCcchhhhccc-cCCcc
Q 035744 209 GFEVVPCSVLHNADAVKKSKLYDKYPNPIKCDS-NVVSMPIKEGQ---PIVFTYEVNFDLSDIKWPSRWDAYLK-MEGSK 283 (653)
Q Consensus 209 gfeV~P~Sv~~~~~~~~~~~~~~~~~~~~~c~~-~~~~~~~~~~~---~i~fTYSV~w~~s~~~w~~Rwd~yl~-~~~~~ 283 (653)
||||+|+|++|.. |+. +..++.+++++ +|+|||||+|++++++|++|||+|++ ..+++
T Consensus 135 gf~v~p~Si~~~~-----------------C~~~~~~~~~l~~~~~~~~i~fTYSV~w~~s~~~w~~Rwd~Yl~~~~~~~ 197 (521)
T PF02990_consen 135 GFEVTPRSIDHST-----------------CPGNESSPQELPEDKEADNITFTYSVKWEESDVPWASRWDKYLDSMFDSQ 197 (521)
T ss_pred EEEEEeccccCcc-----------------ccccCCCCeeccCCCcccEEEEEEEEEEEecCCchhhccccccccccCCc
Confidence 9999999998852 332 23455555544 59999999999999999999999998 78999
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcHHHHhhhhhhcccceEEeccccCCCCCcchhhhhhccchHH
Q 035744 284 VHWFSILNSLMVITFLAGIVLVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFRAPNNAGLLCIMVGNGVQI 363 (653)
Q Consensus 284 ihw~SIiNS~iivl~L~~~v~~Il~R~lr~D~~~Yn~~~~~~~~~~~ee~~GWKlvhgDVFR~P~~~~lLs~lvG~G~Ql 363 (653)
+||+||+||+++|++|+++|++|++|++|||++|||++++++|++ || +|||+|||||||||+|+++||+++|+|+|+
T Consensus 198 ihw~SiiNS~iivl~L~~~v~~Il~R~l~~D~~~y~~~~~~~~~~--ee-~GWKlvhgDVFR~P~~~~lls~lvG~G~Ql 274 (521)
T PF02990_consen 198 IHWFSIINSFIIVLFLSGLVAIILLRTLRRDISRYNDEDSEEDDQ--EE-SGWKLVHGDVFRPPKHPMLLSALVGTGIQL 274 (521)
T ss_pred eEEEeHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccc--cc-cchhhhhHHHhcCcCCchHHHhHhcchhhh
Confidence 999999999999999999999999999999999999988766555 78 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHhhhhhhhhHhhHhhhcCCCCchhhHHHhhhhhhhhHHHHHHHHHH
Q 035744 364 LGMAVVTIFFAALGFMSPASRGTLITGMLFIYMILGVAAGYVAVRLWRTIGCGDLKGWISVAWKAACFFPGIAFLILTTL 443 (653)
Q Consensus 364 l~~~~~~l~~a~lg~lsp~~rg~l~t~~i~~y~~~~~iaGyvS~~lyk~~~~g~~~~Wk~~~~lt~~~~P~~~~~i~~~l 443 (653)
++|+++++++|++|+++|++||+++|+++++|+++|++|||+|+|+||+++ |++ ||+++++|++++|++++++++++
T Consensus 275 l~~~~~~~~~a~~g~~~~~~rg~l~t~~i~~y~~~~~iaGy~S~~~yk~~~-g~~--W~~~~~lt~~~~P~~~~~~~~~~ 351 (521)
T PF02990_consen 275 LFMALVTLFFAALGFLSPNNRGSLLTAAIILYALTSFIAGYVSARLYKSFG-GKK--WKKNSILTSLLFPGILFSIFFIL 351 (521)
T ss_pred hHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHhhHHHHHHHHHHHHcC-CCc--eeehhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 988 99999999999999999999999
Q ss_pred HHHHHhhcCCCCcChHHHHHHHHHHHHhhhhhhhhhhhhhccCCCC-CCCcccCCCCCCCCCCC--CCcchhhhcccccc
Q 035744 444 NFLLWGSHSTGAIPFSLFVILLLLWFCISVPLTLFGGYLGAKAPHI-EYPVRTNQIPREIPAQK--YPSWLLVLGAGTLP 520 (653)
Q Consensus 444 N~i~~~~~Ss~aipf~ti~~l~~lw~~vs~PL~~iG~~~g~k~~~~-~~P~r~n~ipR~IP~qp--~~~~~~~l~~GilP 520 (653)
|+++|.++||+|+||+|++.++++|++|++||+++||++|+|+++. ++|||+|+||||||+|| +++.+.++++|++|
T Consensus 352 n~i~~~~~ss~aipf~t~~~l~~lw~~v~~PL~~lG~~~g~k~~~~~~~p~~~n~ipR~IP~~~~y~~~~~~~l~~G~lP 431 (521)
T PF02990_consen 352 NFIAWSYGSSSAIPFGTILFLIALWFFVSIPLTFLGGYFGFKNPPIDEFPCRTNQIPRQIPPQPWYLSPFFSILIGGILP 431 (521)
T ss_pred HHHHHhhccccccchHHHHHHHHHHHHHhhhhhhcchhhhcCccccccCCcCCCCCCCcCCCCccccCCccceeecchHH
Confidence 9999999999999999999999999999999999999999999988 99999999999999999 88999999999999
Q ss_pred chhhhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcceeehhhhccchhHHHHHHHHHHhh
Q 035744 521 FGTLFIELFFIMSSIWMGRVYYVFGFLLIVLVLLVVVCAEVSLVLTYMHLCVEDWKWWWKSFFASGSVAIYIFLYSINYL 600 (653)
Q Consensus 521 F~ai~iEl~fi~~SlW~~~~yy~fgfL~i~~iilii~~a~vsI~~tY~~L~~Edy~WwWrSF~~~gs~~~y~flYsi~y~ 600 (653)
|++||+|++||++|+|.+++||+||||+++++|++++|||+||++||+|||+||||||||||++|||+|+|+|+||+||+
T Consensus 432 F~~i~iEl~~i~~s~W~~~~y~~fgfl~~~~~ll~i~~a~vsI~~tY~~L~~Edy~WwWrSF~~~~s~~~y~f~Ysi~y~ 511 (521)
T PF02990_consen 432 FGAIFIELYFIFSSLWSNKFYYLFGFLLLVFILLIITCAEVSIILTYFQLCAEDYRWWWRSFLTGGSSGIYVFLYSIYYY 511 (521)
T ss_pred HHHHHHHHHHHHHHhhcCcceEEehHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeehhCcHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccCCcc
Q 035744 601 VFDLRNLSGPV 611 (653)
Q Consensus 601 ~~~~~~~~g~~ 611 (653)
++|+ +|+||+
T Consensus 512 ~~~~-~~~g~~ 521 (521)
T PF02990_consen 512 FTKL-SMSGFV 521 (521)
T ss_pred heeE-EeeecC
Confidence 9999 999974
No 4
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=87.77 E-value=4.9 Score=37.00 Aligned_cols=79 Identities=20% Similarity=0.299 Sum_probs=57.7
Q ss_pred hhhhhhccchHHHHHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHhhhhhhhhHhhHhhhcCCCCchhhHHHhhhhhh
Q 035744 352 LLCIMVGNGVQILGMAVVTIFFAALGFMSPASRGTLITGMLFIYMILGVAAGYVAVRLWRTIGCGDLKGWISVAWKAACF 431 (653)
Q Consensus 352 lLs~lvG~G~Qll~~~~~~l~~a~lg~lsp~~rg~l~t~~i~~y~~~~~iaGyvS~~lyk~~~~g~~~~Wk~~~~lt~~~ 431 (653)
.-+++-|.-.-+..+.+..+++|.+-...+-+.+.+.-...+.++++.+++|++++|.-+ . |.|.. =..++.+
T Consensus 4 ~~~vl~g~~~~~~~tl~~~l~~a~ll~~~~~~e~~~~~~~~~i~~ls~~~GG~~a~~~~~----~--kG~l~-G~~~Gl~ 76 (116)
T PF12670_consen 4 LSAVLKGLLVAYIITLILLLLLALLLYFTSLSESILPWLVVIIYILSVFIGGFYAGRKAG----S--KGWLH-GLLVGLL 76 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc----c--chHHH-HHHHHHH
Confidence 345666777778888888888888766666778888888899999999999999998755 3 33885 3455554
Q ss_pred hhHHHH
Q 035744 432 FPGIAF 437 (653)
Q Consensus 432 ~P~~~~ 437 (653)
+-.+++
T Consensus 77 y~~il~ 82 (116)
T PF12670_consen 77 YFLILL 82 (116)
T ss_pred HHHHHH
Confidence 444433
No 5
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=73.28 E-value=1.4e+02 Score=34.55 Aligned_cols=123 Identities=20% Similarity=0.375 Sum_probs=75.3
Q ss_pred hhccccccchhhhHHHHHHHHhhcccc--hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc----C-------------
Q 035744 513 VLGAGTLPFGTLFIELFFIMSSIWMGR--VYYVFGFLLIVLVLLVVVCAEVSLVLTYMHLCV----E------------- 573 (653)
Q Consensus 513 ~l~~GilPF~ai~iEl~fi~~SlW~~~--~yy~fgfL~i~~iilii~~a~vsI~~tY~~L~~----E------------- 573 (653)
++.+.++|.....+ ...+..-.|.++ --..|+-++.+++++++++.-.+++..|+-... |
T Consensus 334 ~lt~~~~P~~~~~~-~~~~n~i~~~~~ss~aipf~t~~~l~~lw~~v~~PL~~lG~~~g~k~~~~~~~p~~~n~ipR~IP 412 (521)
T PF02990_consen 334 ILTSLLFPGILFSI-FFILNFIAWSYGSSSAIPFGTILFLIALWFFVSIPLTFLGGYFGFKNPPIDEFPCRTNQIPRQIP 412 (521)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHhhccccccchHHHHHHHHHHHHHhhhhhhcchhhhcCccccccCCcCCCCCCCcCC
Confidence 44556777744433 333333446544 235688888888899999999999888876432 2
Q ss_pred Ccceeehhh---hccc---hhHHHHHHHHHHhhhhhccccCCcchhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 035744 574 DWKWWWKSF---FASG---SVAIYIFLYSINYLVFDLRNLSGPVSATLYLGYSLFMVLAIMLATGTVGFLSSFWFV 643 (653)
Q Consensus 574 dy~WwWrSF---~~~g---s~~~y~flYsi~y~~~~~~~~~g~~~~~lyf~Ys~l~s~~~~l~~GtiGflas~~FV 643 (653)
.-.|.=+.+ +.+| ..++|+.+|-++--+-. . .....||+.++..+++.+.|+.++-+.++.-.
T Consensus 413 ~~~~y~~~~~~~l~~G~lPF~~i~iEl~~i~~s~W~----~---~~y~~fgfl~~~~~ll~i~~a~vsI~~tY~~L 481 (521)
T PF02990_consen 413 PQPWYLSPFFSILIGGILPFGAIFIELYFIFSSLWS----N---KFYYLFGFLLLVFILLIITCAEVSIILTYFQL 481 (521)
T ss_pred CCccccCCccceeecchHHHHHHHHHHHHHHHHhhc----C---cceEEehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 124644444 3455 45667777654332211 1 23445677777777788888888888877644
No 6
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=72.94 E-value=65 Score=33.43 Aligned_cols=38 Identities=18% Similarity=0.455 Sum_probs=20.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhcCCCCcChHHHHHHHHHHHHhh
Q 035744 428 AACFFPGIAFLILTTLNFLLWGSHSTGAIPFSLFVILLLLWFCIS 472 (653)
Q Consensus 428 t~~~~P~~~~~i~~~lN~i~~~~~Ss~aipf~ti~~l~~lw~~vs 472 (653)
...++|+...++.++ .. .++..+...++.+.++|+-+.
T Consensus 200 n~~ll~~~~~~l~i~----s~---~t~~~q~la~lvl~~I~iyi~ 237 (248)
T PF11368_consen 200 NQYLLPILYILLFIY----SL---LTGENQLLAILVLIIIWIYIN 237 (248)
T ss_pred HHHHHHHHHHHHHHH----HH---HcCCccHHHHHHHHHHHHHHH
Confidence 445666655544432 11 234455666677778887554
No 7
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=70.90 E-value=20 Score=41.13 Aligned_cols=59 Identities=20% Similarity=0.300 Sum_probs=45.2
Q ss_pred CCCCCcchhhhhhccchHHHHHHHHHHHHHHhcccCCCCcchHHHHHHH--HHHHHhhhhh
Q 035744 345 RAPNNAGLLCIMVGNGVQILGMAVVTIFFAALGFMSPASRGTLITGMLF--IYMILGVAAG 403 (653)
Q Consensus 345 R~P~~~~lLs~lvG~G~Qll~~~~~~l~~a~lg~lsp~~rg~l~t~~i~--~y~~~~~iaG 403 (653)
+.|.-.+.++.+++++=+-+.-+++.++---.|.+.|.-+|.++..+.+ +|.+.+.+.|
T Consensus 264 ~~~~~~~~~a~i~sa~K~Tlsr~LlLIVSlGYGIVkP~Lg~~l~rv~~ig~~~~i~s~i~~ 324 (518)
T KOG2568|consen 264 MSPKVYTVFASILSAIKKTLSRLLLLIVSLGYGIVKPTLGGTLLRVCQIGVIYFIASEILG 324 (518)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcceEecCcchHHHHHHHHhHHHHHHHHHHH
Confidence 3788889999999999999887777777777889999888888876544 4444454544
No 8
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=67.06 E-value=57 Score=37.55 Aligned_cols=67 Identities=21% Similarity=0.346 Sum_probs=32.0
Q ss_pred cccCCCCC--cchhhhhhccchHHHHHH----HHHHHHHHhcccCCCCcchHHHHHHHHHHHHhhhhhhhhHhh
Q 035744 342 DVFRAPNN--AGLLCIMVGNGVQILGMA----VVTIFFAALGFMSPASRGTLITGMLFIYMILGVAAGYVAVRL 409 (653)
Q Consensus 342 DVFR~P~~--~~lLs~lvG~G~Qll~~~----~~~l~~a~lg~lsp~~rg~l~t~~i~~y~~~~~iaGyvS~~l 409 (653)
|++|-|.+ +++....+..+-|+-..- -.+-++--.|+- +..--....+.-++.+++++++.+.-=|.
T Consensus 260 ~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~-~~~a~~an~~~g~v~~~~t~~~~~lid~~ 332 (485)
T KOG0569|consen 260 QLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFT-PEEAQYANLGIGIVNLLSTLVSPFLIDRL 332 (485)
T ss_pred HHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 78898854 444555555555553322 222333344533 22222223333345556666666554443
No 9
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=59.05 E-value=75 Score=32.04 Aligned_cols=45 Identities=18% Similarity=0.536 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHhhhhhhhhHhhHhhh
Q 035744 366 MAVVTIFFAALGFMSPASRGTLITGMLFIYMILGVAAGYVAVRLWRTI 413 (653)
Q Consensus 366 ~~~~~l~~a~lg~lsp~~rg~l~t~~i~~y~~~~~iaGyvS~~lyk~~ 413 (653)
..+.+++.+.++++++.++... .+..-++.++++|.+-..+++.+
T Consensus 90 ~~if~~~~gi~~~f~~~~~~~~---gi~tli~~~i~~G~~~~~~~~~i 134 (206)
T PF06570_consen 90 FGIFSLLFGIMGFFSPKNSNQY---GIITLILVSIVGGLVFYFIFKYI 134 (206)
T ss_pred HHHHHHHHHHHHHHhhcccccc---cHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667778888777433221 33333445666666666665543
No 10
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=54.25 E-value=45 Score=33.60 Aligned_cols=130 Identities=17% Similarity=0.370 Sum_probs=60.4
Q ss_pred cCCCCCCCCCCC--CC--cchhhhccccccchhhhHHHHHHHHhhccc-c--hhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035744 495 TNQIPREIPAQK--YP--SWLLVLGAGTLPFGTLFIELFFIMSSIWMG-R--VYYVFGFLLIVLVLLVVVCAEVSLVLTY 567 (653)
Q Consensus 495 ~n~ipR~IP~qp--~~--~~~~~l~~GilPF~ai~iEl~fi~~SlW~~-~--~yy~fgfL~i~~iilii~~a~vsI~~tY 567 (653)
..++=++-|+++ .+ ....+.+-+.+-|.+++.=+.-++. .+.. + .| |++.+.. ..+.+-+.+...|
T Consensus 59 a~eli~~~~k~~~~~~~~~~~~~~ld~~L~~~~if~~~~gi~~-~f~~~~~~~~---gi~tli~---~~i~~G~~~~~~~ 131 (206)
T PF06570_consen 59 ADELIKPLPKPKKKNKNSNPWLMALDNSLLFFGIFSLLFGIMG-FFSPKNSNQY---GIITLIL---VSIVGGLVFYFIF 131 (206)
T ss_pred HHHHhccccCCcccccccchHHHHHHHHHHHHHHHHHHHHHHH-HHhhcccccc---cHHHHHH---HHHHHHHHHHHHH
Confidence 344445555554 11 3344555555556666554444433 3332 1 23 6554322 2222333333333
Q ss_pred hhcc----cCCcceeehhhhccc-hhHHHHHHHHHHhhhhhccccCCcchhhhHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 035744 568 MHLC----VEDWKWWWKSFFASG-SVAIYIFLYSINYLVFDLRNLSGPVSATLYLGYSLFMVLAIMLATGTVGFLSSFWF 642 (653)
Q Consensus 568 ~~L~----~Edy~WwWrSF~~~g-s~~~y~flYsi~y~~~~~~~~~g~~~~~lyf~Ys~l~s~~~~l~~GtiGflas~~F 642 (653)
-.+. .+...+||+.+..+. +..+++.++.+..++-. .++ +.+ +-...++.|.+.+.+.+++
T Consensus 132 ~~i~~~~~~~~r~~~~k~~~~~~~~~~~w~~~~~~~~~lp~--~in---p~l---------~~~~~iiig~i~~~~~~~l 197 (206)
T PF06570_consen 132 KYIYPYKKKKKRPSWWKYILISVLAMVLWIVIFVLTSFLPP--VIN---PVL---------PPWVYIIIGVIAFALRFYL 197 (206)
T ss_pred HHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccc--cCC---cCC---------CHHHHHHHHHHHHHHHHHH
Confidence 3333 456678999987444 34445555544333211 122 222 2233445566666666555
Q ss_pred HHH
Q 035744 643 VHY 645 (653)
Q Consensus 643 V~~ 645 (653)
-||
T Consensus 198 kkk 200 (206)
T PF06570_consen 198 KKK 200 (206)
T ss_pred HHH
Confidence 444
No 11
>PF13347 MFS_2: MFS/sugar transport protein
Probab=54.19 E-value=98 Score=33.99 Aligned_cols=75 Identities=17% Similarity=0.219 Sum_probs=41.6
Q ss_pred ccceEEeccccCCCCCcchhhhhh--ccchHHHHHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHhhhhhhhhHhhHh
Q 035744 334 SGWKLVVGDVFRAPNNAGLLCIMV--GNGVQILGMAVVTIFFAALGFMSPASRGTLITGMLFIYMILGVAAGYVAVRLWR 411 (653)
Q Consensus 334 ~GWKlvhgDVFR~P~~~~lLs~lv--G~G~Qll~~~~~~l~~a~lg~lsp~~rg~l~t~~i~~y~~~~~iaGyvS~~lyk 411 (653)
.++|..-..+||-|+...++.+.. ..|..+......-.+-..+| .+...+.....+.+.++++....+++-|
T Consensus 212 ~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~------~~~~~~~~~~~~~~~~~v~~~~~~~l~~ 285 (428)
T PF13347_consen 212 ISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLG------NEGLISIFMLIFFVASIVGSPLWGRLSK 285 (428)
T ss_pred cccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhc------CchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566655667888776654443322 23333322222111112222 1244555556677788888888899988
Q ss_pred hhc
Q 035744 412 TIG 414 (653)
Q Consensus 412 ~~~ 414 (653)
.+|
T Consensus 286 r~g 288 (428)
T PF13347_consen 286 RFG 288 (428)
T ss_pred Hcc
Confidence 888
No 12
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=51.92 E-value=1.1e+02 Score=35.26 Aligned_cols=93 Identities=11% Similarity=0.165 Sum_probs=45.2
Q ss_pred chHHHHHHH----HHHHHhhhhhhhhHhhHhhhcCCCCchhhHHHhhhhhhhhHHHHHHHHHHHHHHHhhcCC-------
Q 035744 385 GTLITGMLF----IYMILGVAAGYVAVRLWRTIGCGDLKGWISVAWKAACFFPGIAFLILTTLNFLLWGSHST------- 453 (653)
Q Consensus 385 g~l~t~~i~----~y~~~~~iaGyvS~~lyk~~~~g~~~~Wk~~~~lt~~~~P~~~~~i~~~lN~i~~~~~Ss------- 453 (653)
+.+++..+. +|.+.|.+=|+.+++ +++.++ ..+.+--..--....+.+.++..+++.+.+.|.
T Consensus 293 SPf~~gIIpiI~l~F~i~GivYG~~sG~----iks~~D--v~~~M~~~m~~m~~yiVL~F~aaQFia~F~~Snlg~i~Av 366 (502)
T PF03806_consen 293 SPFMKGIIPIIFLFFLIPGIVYGIASGT----IKSDKD--VVKMMSKGMKSMAPYIVLAFFAAQFIAYFNWSNLGTILAV 366 (502)
T ss_pred ChHHHhHHHHHHHHHHHHHHHHhhhhce----ecCHHH--HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 345554444 444455555555554 331112 433333333333445556666667777666654
Q ss_pred ------CCcChHHHHHHHHHHHHhhhhhhhhhhhhh
Q 035744 454 ------GAIPFSLFVILLLLWFCISVPLTLFGGYLG 483 (653)
Q Consensus 454 ------~aipf~ti~~l~~lw~~vs~PL~~iG~~~g 483 (653)
.+..+..+..++.+-++.++=--++||--+
T Consensus 367 ~GA~~L~~~~~~~~~l~i~fill~a~iNLfi~S~Sa 402 (502)
T PF03806_consen 367 KGAEFLKSLGLPGIPLIIGFILLTAFINLFIGSASA 402 (502)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhcchh
Confidence 222334444444444555555556666554
No 13
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.42 E-value=6e+02 Score=30.00 Aligned_cols=119 Identities=17% Similarity=0.348 Sum_probs=78.9
Q ss_pred cccccchhhhHHHHHHHHhhcccc--hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC----------------Ccce
Q 035744 516 AGTLPFGTLFIELFFIMSSIWMGR--VYYVFGFLLIVLVLLVVVCAEVSLVLTYMHLCVE----------------DWKW 577 (653)
Q Consensus 516 ~GilPF~ai~iEl~fi~~SlW~~~--~yy~fgfL~i~~iilii~~a~vsI~~tY~~L~~E----------------dy~W 577 (653)
++++-=++++.-.+....=+|.++ ==--|+-++..++|...++.-.+-+.-|+--+.. ..+|
T Consensus 402 ta~l~PGivf~~~f~lN~~lW~~~SSgAvPF~T~~~ll~LwF~isVPLsf~G~y~g~kk~~~e~PvrTNqIpRqIP~q~~ 481 (628)
T KOG1278|consen 402 TAFLFPGIVFAIFFVLNFFLWGKHSSGAVPFSTMVALLFLWFGISVPLSFVGGYFGFKKPAIEHPVRTNQIPRQIPEQPW 481 (628)
T ss_pred hhhhcchHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHhhhhHHHhhHHhhccCCCCCCCcccCCCcccCCCCcc
Confidence 333334556665555555679765 2234677777777788788788888888765432 2577
Q ss_pred e---ehhhhccc---hhHHHHHHHHHHhhhhhccccCCcchhhhHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 035744 578 W---WKSFFASG---SVAIYIFLYSINYLVFDLRNLSGPVSATLYLGYSLFMVLAIMLATGTVGFLSSFW 641 (653)
Q Consensus 578 w---WrSF~~~g---s~~~y~flYsi~y~~~~~~~~~g~~~~~lyf~Ys~l~s~~~~l~~GtiGflas~~ 641 (653)
+ |.+-+.+| .-++|+.++. .++.+ =++ |.-+.||+.++.-+++-+.|.-|+-+.|++
T Consensus 482 y~~~~~~ili~GilPFg~ifIELfF---I~~Si-W~~---qfYY~FGFLFlvfiiLvvtcaeisIvl~Yf 544 (628)
T KOG1278|consen 482 YLNPIPSILIAGILPFGAIFIELFF---ILSSI-WLN---QFYYMFGFLFLVFIILVVTCAEISIVLTYF 544 (628)
T ss_pred ccchhhHHHhhcccchHHHHHHHHH---HHHHH-Hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 45556666 3456777754 44444 222 778888998888888888998888888775
No 14
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional
Probab=42.93 E-value=84 Score=36.36 Aligned_cols=51 Identities=14% Similarity=0.287 Sum_probs=28.4
Q ss_pred cchHHHHHHHHHHHHHH--hcccCCCCcc-----hHHH----HHHHHHHHHhhhhhhhhHhh
Q 035744 359 NGVQILGMAVVTIFFAA--LGFMSPASRG-----TLIT----GMLFIYMILGVAAGYVAVRL 409 (653)
Q Consensus 359 ~G~Qll~~~~~~l~~a~--lg~lsp~~rg-----~l~t----~~i~~y~~~~~iaGyvS~~l 409 (653)
.|+-++..+.+.+++.. -|.++....| -+++ ...++|.+.|++-|++++++
T Consensus 265 Ag~~~l~~~~~i~~l~lP~~g~Lr~~~tG~l~~Sp~~~siv~~i~~~Fli~GivyG~~~g~i 326 (508)
T PRK11339 265 AGVVSLLFIAAIALMVIPENGILRDPINHTVMPSPFIKGIVPLIILFFFVVSLAYGIATRTI 326 (508)
T ss_pred HHHHHHHHHHHHHHHHccCCcccccCCCCCccCChHHHhHHHHHHHHHHHHHHHHhhhcccc
Confidence 45555554444333321 4455432224 5677 56667777888888777754
No 15
>TIGR00901 2A0125 AmpG-related permease.
Probab=39.19 E-value=4.7e+02 Score=27.40 Aligned_cols=17 Identities=6% Similarity=0.190 Sum_probs=10.6
Q ss_pred HhhhhhhhhHhhHhhhc
Q 035744 398 LGVAAGYVAVRLWRTIG 414 (653)
Q Consensus 398 ~~~iaGyvS~~lyk~~~ 414 (653)
.+.+++..++++.+.++
T Consensus 257 ~~~~g~~~~g~l~~r~g 273 (356)
T TIGR00901 257 GAILGGLIGGIIMQPLN 273 (356)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 44455566667766666
No 16
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=38.31 E-value=2.4e+02 Score=32.11 Aligned_cols=28 Identities=21% Similarity=0.194 Sum_probs=20.2
Q ss_pred cChHHHHHHHHHHHHhhhhhhhhhhhhh
Q 035744 456 IPFSLFVILLLLWFCISVPLTLFGGYLG 483 (653)
Q Consensus 456 ipf~ti~~l~~lw~~vs~PL~~iG~~~g 483 (653)
-+.-....++.+=++|.-|=.++|-...
T Consensus 345 ~~~l~~~~l~~iGf~IyGPqmLiGl~a~ 372 (448)
T COG2271 345 SYLLDAILLFIIGFLIYGPQMLIGLAAA 372 (448)
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 4455667777778889999977776553
No 17
>TIGR02973 nitrate_rd_NapE periplasmic nitrate reductase, NapE protein. NapE, homologous to TorE (TIGR02972), is a membrane protein of unknown function that is part of the periplasmic nitrate reductase system; it may be part of the enzyme complex. The periplasmic nitrate reductase allows for nitrate respiration in anaerobic conditions.
Probab=35.55 E-value=40 Score=25.79 Aligned_cols=32 Identities=16% Similarity=0.357 Sum_probs=28.6
Q ss_pred hhHHHhhhhhhhhHHHHHHHHHHHHHHHhhcC
Q 035744 421 WISVAWKAACFFPGIAFLILTTLNFLLWGSHS 452 (653)
Q Consensus 421 Wk~~~~lt~~~~P~~~~~i~~~lN~i~~~~~S 452 (653)
||...+++..++|.+..+....--++.|..+-
T Consensus 5 l~~flfl~~~l~PiLsV~~V~~YGF~vWm~Q~ 36 (42)
T TIGR02973 5 LNTFLFLAAVIWPVLSVITVGGYGFAVWMYQI 36 (42)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888888887654
No 18
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=35.37 E-value=1.8e+02 Score=28.99 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=16.4
Q ss_pred HHHHHHHhhhhhhhhhhhhhccC
Q 035744 464 LLLLWFCISVPLTLFGGYLGAKA 486 (653)
Q Consensus 464 l~~lw~~vs~PL~~iG~~~g~k~ 486 (653)
.+.+...+.+-..++|+++|.|.
T Consensus 157 ~~~~~~~~~~v~a~lG~~lG~kl 179 (186)
T PF09605_consen 157 MLIIIIIITFVGALLGALLGKKL 179 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556677789999999874
No 19
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=34.41 E-value=8.6e+02 Score=28.93 Aligned_cols=63 Identities=19% Similarity=0.235 Sum_probs=35.6
Q ss_pred hccchHHHHHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHhhhhhhhhHhhHhhhcCCCCchhhHHHhhhhhh
Q 035744 357 VGNGVQILGMAVVTIFFAALGFMSPASRGTLITGMLFIYMILGVAAGYVAVRLWRTIGCGDLKGWISVAWKAACF 431 (653)
Q Consensus 357 vG~G~Qll~~~~~~l~~a~lg~lsp~~rg~l~t~~i~~y~~~~~iaGyvS~~lyk~~~~g~~~~Wk~~~~lt~~~ 431 (653)
+|.|.|.+..+. .+ ...+.+.|+.-....-+.++....+++.++.++.. . .+|++...+....
T Consensus 143 vgaG~~~~~~~~----is--El~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~----~--~~WRw~~~~~~i~ 205 (599)
T PF06609_consen 143 VGAGVQELAALA----IS--ELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA----H--SGWRWIFYIFIIW 205 (599)
T ss_pred HhhHHHHHHHHH----HH--HhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc----C--CCcchHHHHHHHH
Confidence 367888754322 12 23344556654444445556666677777776543 2 3499877666443
No 20
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=33.71 E-value=2.8e+02 Score=31.73 Aligned_cols=28 Identities=11% Similarity=-0.035 Sum_probs=15.1
Q ss_pred hhhhhhhhHhh---HhhhcCCCCchhhHHHhh
Q 035744 399 GVAAGYVAVRL---WRTIGCGDLKGWISVAWK 427 (653)
Q Consensus 399 ~~iaGyvS~~l---yk~~~~g~~~~Wk~~~~l 427 (653)
|.+.|-..+-. |..|| ..++-||+..++
T Consensus 572 G~i~GLl~s~~~~PYi~Fg-~~d~yrKr~~il 602 (652)
T KOG2290|consen 572 GTIFGLLTSIIFLPYIDFG-DFDLYRKRFYIL 602 (652)
T ss_pred HHHHHHHHHHHhhcccccc-chhhhhhHHHHH
Confidence 44455444432 66788 544457775443
No 21
>PLN02715 lipid phosphate phosphatase
Probab=31.87 E-value=7.2e+02 Score=27.26 Aligned_cols=29 Identities=21% Similarity=0.077 Sum_probs=17.6
Q ss_pred ceeehhhhccchh-HHHHHHHHHHhhhhhc
Q 035744 576 KWWWKSFFASGSV-AIYIFLYSINYLVFDL 604 (653)
Q Consensus 576 ~WwWrSF~~~gs~-~~y~flYsi~y~~~~~ 604 (653)
+.-++||=+|=++ ++....|-.+|+..++
T Consensus 181 ~dg~~SFPSGHSS~sfagl~~Lsl~L~~kl 210 (327)
T PLN02715 181 KEGHKSFPSGHTSWSFAGLTFLSLYLSGKI 210 (327)
T ss_pred cccCCCCCchhHHHHHHHHHHHHHHHHHhh
Confidence 4678999666544 4445555555665555
No 22
>PF08055 Trp_leader1: Tryptophan leader peptide; InterPro: IPR012638 This family consists of the tryptophan (trp) leader peptides. Tryptophan accumulation is the principal event resulting in down regulation of transcription of the structural genes of the trp operon. The leader peptide of the trp operon forms mutually exclusive secondary structures that would either result in the termination of transcription of the trp operon when tryptophan is in plentiful supply or vice versa [].
Probab=31.72 E-value=18 Score=22.20 Aligned_cols=8 Identities=38% Similarity=1.585 Sum_probs=5.8
Q ss_pred Ccceeehh
Q 035744 574 DWKWWWKS 581 (653)
Q Consensus 574 dy~WwWrS 581 (653)
--+|||.+
T Consensus 6 ~~nwwwta 13 (18)
T PF08055_consen 6 IQNWWWTA 13 (18)
T ss_pred ccceeeec
Confidence 35799975
No 23
>COG5393 Predicted membrane protein [Function unknown]
Probab=31.70 E-value=53 Score=30.62 Aligned_cols=25 Identities=12% Similarity=0.236 Sum_probs=18.1
Q ss_pred CCCCcc-hHHHHHHHHHHHHhhhhhh
Q 035744 380 SPASRG-TLITGMLFIYMILGVAAGY 404 (653)
Q Consensus 380 sp~~rg-~l~t~~i~~y~~~~~iaGy 404 (653)
.|.+|= +......++|+++.+.+++
T Consensus 77 ~~tyRl~a~~a~~~vl~vl~~i~ciW 102 (131)
T COG5393 77 DPTYRLNAMIATTAVLLVLALIGCIW 102 (131)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466665 6677777888888777765
No 24
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=31.12 E-value=99 Score=29.95 Aligned_cols=66 Identities=17% Similarity=0.236 Sum_probs=48.6
Q ss_pred CCcchhhhhhccchHHHHHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHhhhhhhhhHhhHhhhcCCCCchhhH
Q 035744 348 NNAGLLCIMVGNGVQILGMAVVTIFFAALGFMSPASRGTLITGMLFIYMILGVAAGYVAVRLWRTIGCGDLKGWIS 423 (653)
Q Consensus 348 ~~~~lLs~lvG~G~Qll~~~~~~l~~a~lg~lsp~~rg~l~t~~i~~y~~~~~iaGyvS~~lyk~~~~g~~~~Wk~ 423 (653)
...+|.|+++=-=.+++++++.++++.-++... ...++.++.+...||..+|-|...- +++..|+-
T Consensus 71 EkslL~sA~LvYi~PL~~l~v~~~La~~L~~~e---------~~~~~~~~lg~~l~fl~~r~ysRkl-~~~~~~Qp 136 (150)
T COG3086 71 EKSLLKSALLVYIFPLVGLFLGAILAQYLFFSE---------LIVIFGAFLGLALGFLLARRYSRKL-AKRTEWQP 136 (150)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------HHHHHHHHHHHHHHHHHHHHHHHHh-hhcccCCC
Confidence 355788999888899999888888877665533 4555667888999999999986544 34444764
No 25
>PF10539 Dev_Cell_Death: Development and cell death domain; InterPro: IPR013989 The DCD (Development and Cell Death) domain is found in plant proteins involved in development and cell death. The DCD domain is an ~130 amino acid long stretch that contains several mostly invariable motifs. These include a FGLP and a LFL motif at the N terminus and a PAQV and a PLxE motif towards the C terminus of the domain. The DCD domain is present in proteins with different architectures. Some of these proteins contain additional recognizable motifs, like the KELCH repeats or the ParB domain []. Biological studies indicate a role of these proteins in phytohormone response, embryo development and programmed cell death by pathogens or ozone. The predicted secondary structure of the DCD domain is mostly composed of beta strands and confined by an alpha-helix at the N- and at the C terminus []. Proteins known to contain a DCD domain are listed below: Carrot B2 protein. Pea Gda-1 protein. Soybean N-rich protein (NRP).
Probab=30.24 E-value=28 Score=33.04 Aligned_cols=77 Identities=19% Similarity=0.189 Sum_probs=43.8
Q ss_pred EEeecccCCCCcccccccCCCCCCCCCccCccCCc-cchhcCCccccC--CeEEEeccccccccccccCCCCHHHHHHHH
Q 035744 41 KVNSITSIDTEMPFSYYSLPFCKPQEGVKDSAENL-GELLMGDRIENS--PYRFKMFTNETDIFLCKTDPLSKDNFELLK 117 (653)
Q Consensus 41 ~vNkl~s~~~~~~Y~Yy~lpfC~p~~~~~~~~~sl-GevL~Gdr~~~S--~y~i~f~~~~~~c~lC~~~~~t~~~~~~l~ 117 (653)
+|.+|+|-.+..-|||-+=...-+=+-..+-..|+ -+...|+.-..| |.|++|..... | . .+.++ .++
T Consensus 31 ~V~~I~pG~~LFLfn~~~r~L~GifeA~S~G~~ni~p~Af~~~~~~~~~fPAQVrf~i~~~-C---~--PL~E~---~fk 101 (130)
T PF10539_consen 31 FVKKIKPGMPLFLFNYSDRKLYGIFEATSDGGMNIEPYAFSGSGSGESPFPAQVRFRIRWD-C---P--PLPES---QFK 101 (130)
T ss_pred HHheeCCCCEEEEEEcCCCEEEEEEEecCCCccCcChhhhCCCCCCCcccceEEEEEEeee-e---e--cCCHH---HHH
Confidence 35788888888889987622211100001112233 234455554445 45888988888 4 3 34443 567
Q ss_pred HHHHhcceE
Q 035744 118 RRIDEMYQV 126 (653)
Q Consensus 118 ~~I~~~Y~~ 126 (653)
.+|+++|+-
T Consensus 102 ~aI~~Ny~~ 110 (130)
T PF10539_consen 102 PAIKDNYYD 110 (130)
T ss_pred HHHHHhCCC
Confidence 888888864
No 26
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=30.11 E-value=1.8e+02 Score=32.05 Aligned_cols=27 Identities=26% Similarity=0.251 Sum_probs=13.3
Q ss_pred cchHHHHHHHHHHHHhhhhhhhhHhhH
Q 035744 384 RGTLITGMLFIYMILGVAAGYVAVRLW 410 (653)
Q Consensus 384 rg~l~t~~i~~y~~~~~iaGyvS~~ly 410 (653)
.|.+.....+.-++++.++|+.+.|+.
T Consensus 299 ~g~~~~~~~~~~~i~~~~~g~l~d~~~ 325 (465)
T TIGR00894 299 NGLLSSLPYLFAWLCSIFAGYLADFLK 325 (465)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344333333344455566666665543
No 27
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=30.04 E-value=45 Score=27.13 Aligned_cols=34 Identities=18% Similarity=0.369 Sum_probs=29.3
Q ss_pred chhhHHHhhhhhhhhHHHHHHHHHHHHHHHhhcC
Q 035744 419 KGWISVAWKAACFFPGIAFLILTTLNFLLWGSHS 452 (653)
Q Consensus 419 ~~Wk~~~~lt~~~~P~~~~~i~~~lN~i~~~~~S 452 (653)
..||...+++.+++|.+..++...--++.|..+-
T Consensus 16 ~E~~~flfl~~~l~PiL~v~~Vg~YGF~VWm~Q~ 49 (56)
T PF06796_consen 16 SELKAFLFLAVVLFPILAVAFVGGYGFIVWMYQI 49 (56)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3499999999999999999999888888887654
No 28
>TIGR02972 TMAO_torE trimethylamine N-oxide reductase system, TorE protein. Members of this small, apparent transmembrane protein are designated TorE and occur in operons for the trimethylamine N-oxide (TMAO) reductase system. Members are closely related to the NapE protein of the related periplasmic nitrate reductase system. It may be that TorE is an integral membrane subunit of a complex with the reductase TorA.
Probab=28.89 E-value=48 Score=26.01 Aligned_cols=34 Identities=12% Similarity=0.360 Sum_probs=29.2
Q ss_pred chhhHHHhhhhhhhhHHHHHHHHHHHHHHHhhcC
Q 035744 419 KGWISVAWKAACFFPGIAFLILTTLNFLLWGSHS 452 (653)
Q Consensus 419 ~~Wk~~~~lt~~~~P~~~~~i~~~lN~i~~~~~S 452 (653)
+.||...+++..++|.+..+....--++.|..+-
T Consensus 8 ~El~~flfl~v~l~PiLsV~~Vg~YGF~vWm~Q~ 41 (47)
T TIGR02972 8 NELKALGFIIVVLFPILSVAGIGGYGFIIWMIQA 41 (47)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3499999999999999999888888888887654
No 29
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=28.77 E-value=6.2e+02 Score=29.75 Aligned_cols=27 Identities=22% Similarity=0.214 Sum_probs=22.7
Q ss_pred ChHHHHHHHHHHHHhhhhhhhhhhhhh
Q 035744 457 PFSLFVILLLLWFCISVPLTLFGGYLG 483 (653)
Q Consensus 457 pf~ti~~l~~lw~~vs~PL~~iG~~~g 483 (653)
+....+.++++-++.++||.++|...+
T Consensus 324 ~~~g~~~l~~~gLG~~~Plll~~~~~~ 350 (571)
T PRK00293 324 LLLGGLTLYLLALGMGLPLILITTFGN 350 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677888899999999999998865
No 30
>TIGR00895 2A0115 benzoate transport.
Probab=28.46 E-value=1.5e+02 Score=31.09 Aligned_cols=25 Identities=16% Similarity=0.077 Sum_probs=15.9
Q ss_pred HHHHHHHHHhhhhhhhhHhhHhhhc
Q 035744 390 GMLFIYMILGVAAGYVAVRLWRTIG 414 (653)
Q Consensus 390 ~~i~~y~~~~~iaGyvS~~lyk~~~ 414 (653)
.....+.+++.++..+++++-+.++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (398)
T TIGR00895 289 TGGALFNFGGVIGSIIFGWLADRLG 313 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3344555666777777777766666
No 31
>TIGR00893 2A0114 d-galactonate transporter.
Probab=27.27 E-value=3.5e+02 Score=27.91 Aligned_cols=21 Identities=19% Similarity=0.088 Sum_probs=12.8
Q ss_pred HHHHHhhhhhhhhHhhHhhhc
Q 035744 394 IYMILGVAAGYVAVRLWRTIG 414 (653)
Q Consensus 394 ~y~~~~~iaGyvS~~lyk~~~ 414 (653)
...+.+.++....+++-+.++
T Consensus 259 ~~~~~~~~~~~~~g~~~~~~~ 279 (399)
T TIGR00893 259 LPGIVGFIGMILGGRLSDLLL 279 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344555666666666666666
No 32
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=26.39 E-value=1.7e+02 Score=32.92 Aligned_cols=33 Identities=18% Similarity=0.343 Sum_probs=18.1
Q ss_pred CCcchHHHHHHHHHHHHhhhhhhhhHhhHhhhc
Q 035744 382 ASRGTLITGMLFIYMILGVAAGYVAVRLWRTIG 414 (653)
Q Consensus 382 ~~rg~l~t~~i~~y~~~~~iaGyvS~~lyk~~~ 414 (653)
...+.+.+..-+.=+++..++|+.+-|+-+..+
T Consensus 288 ~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~ 320 (476)
T PLN00028 288 ETAGAIAASFGLMNLFARPAGGYLSDVAARRFG 320 (476)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcC
Confidence 334444443334445566777777777665444
No 33
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.90 E-value=5.9e+02 Score=27.52 Aligned_cols=65 Identities=18% Similarity=0.320 Sum_probs=45.6
Q ss_pred ccchhHHHHHHHHHHhhhhhc-------cccCCcchhhhHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHhh
Q 035744 584 ASGSVAIYIFLYSINYLVFDL-------RNLSGPVSATLYLGYSLFMVLAIMLATG--TVGFLSSFWFVHYLFS 648 (653)
Q Consensus 584 ~~gs~~~y~flYsi~y~~~~~-------~~~~g~~~~~lyf~Ys~l~s~~~~l~~G--tiGflas~~FV~~IY~ 648 (653)
++..-++|+|.|-....++.+ ....|+++++-.+..++.+++++.+..| |+....+.|-++++|+
T Consensus 195 SSf~F~~FFF~y~~q~~~~v~qAvgf~g~~~~G~i~ai~~~~~~i~v~i~m~i~a~~Ft~~av~~i~~i~kVh~ 268 (313)
T KOG3088|consen 195 SSFNFGAFFFTYFFQIVFCVFQAVGFPGWGLCGWIPAIDVLSGNIAVGILMLIGAGLFTLEAVLSIWVLQKVHS 268 (313)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHccCCcchhhhhhHhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788887665554432 2567888999999988888887776554 4556677888888765
No 34
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=25.78 E-value=23 Score=37.75 Aligned_cols=33 Identities=21% Similarity=0.461 Sum_probs=0.0
Q ss_pred HhhHhhhcCCCCchhhHHHhhhhhhhhHHHHHHHHH
Q 035744 407 VRLWRTIGCGDLKGWISVAWKAACFFPGIAFLILTT 442 (653)
Q Consensus 407 ~~lyk~~~~g~~~~Wk~~~~lt~~~~P~~~~~i~~~ 442 (653)
..+.+..+ .+- |...+++-++++-.++++|...
T Consensus 126 m~lLr~~G-As~--WtiLaFcLAF~LaivlLIIAv~ 158 (381)
T PF05297_consen 126 MWLLRELG-ASF--WTILAFCLAFLLAIVLLIIAVL 158 (381)
T ss_dssp ------------------------------------
T ss_pred HHHHHHhh-hHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777 666 8766666555554444444333
No 35
>MTH00086 CYTB cytochrome b; Provisional
Probab=24.89 E-value=2.1e+02 Score=31.68 Aligned_cols=101 Identities=19% Similarity=0.391 Sum_probs=57.0
Q ss_pred hhHHHHHHH-HHHHHHHHHHHHHHHHH----------hhhhcccCCcceeehhhhccchhHHHHHHH-----HHHhhhhh
Q 035744 540 VYYVFGFLL-IVLVLLVVVCAEVSLVL----------TYMHLCVEDWKWWWKSFFASGSVAIYIFLY-----SINYLVFD 603 (653)
Q Consensus 540 ~yy~fgfL~-i~~iilii~~a~vsI~~----------tY~~L~~Edy~WwWrSF~~~gs~~~y~flY-----si~y~~~~ 603 (653)
..+-+|.++ +++++.++|....+.-- +..-.+.-+++|--|+.-.-|++..++.+| .+||-..|
T Consensus 18 ~~w~~Gsll~~~l~iQiiTGi~L~~~Y~p~~~~Af~Sv~~I~~~v~~GwliR~~H~~gas~~f~~~ylHi~R~~~ygsy~ 97 (355)
T MTH00086 18 YWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYR 97 (355)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHhCcccccHHHHHHHHhHHHHHHHHHHHHHHHHHHHcccC
Confidence 446788765 44555555543322211 111223457999999999999999988877 33443333
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 035744 604 LRNLSGPVSATLYLGYSLFMVLAIMLATGTVGFLSSFW 641 (653)
Q Consensus 604 ~~~~~g~~~~~lyf~Ys~l~s~~~~l~~GtiGflas~~ 641 (653)
. +..-.+..++++.-+...=...-|-.|-.||.++-.
T Consensus 98 ~-~~~W~~Gv~l~~l~m~~af~GYvLpw~qms~w~~~V 134 (355)
T MTH00086 98 L-KKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVV 134 (355)
T ss_pred C-chHHHHhHHHHHHHHHHHHhhhhcccCchhHHHHHH
Confidence 3 334445555555555444444445556666655543
No 36
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=24.78 E-value=1e+03 Score=26.75 Aligned_cols=67 Identities=16% Similarity=0.188 Sum_probs=48.2
Q ss_pred cccCCCCC-cchhhhhhccchHHHHHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHhhhhhhhhHhhHhh
Q 035744 342 DVFRAPNN-AGLLCIMVGNGVQILGMAVVTIFFAALGFMSPASRGTLITGMLFIYMILGVAAGYVAVRLWRT 412 (653)
Q Consensus 342 DVFR~P~~-~~lLs~lvG~G~Qll~~~~~~l~~a~lg~lsp~~rg~l~t~~i~~y~~~~~iaGyvS~~lyk~ 412 (653)
+++|.|+- ..++..+++.|-|+..-+-+.=++.-..= -+.+.++..++.|=++++++...+||+.+.
T Consensus 206 ~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g----~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr 273 (394)
T COG2814 206 RLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAG----FSVSAVSLVLLAFGIAGFIGNLLGGRLADR 273 (394)
T ss_pred HHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccC----CCHhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 57888874 45567778888888665555544433211 145778889999999999999999998664
No 37
>MTH00053 CYTB cytochrome b; Provisional
Probab=22.82 E-value=2.2e+02 Score=31.79 Aligned_cols=100 Identities=16% Similarity=0.273 Sum_probs=55.6
Q ss_pred hhHHHHHHH-HHHHHHHHHHHHHHH----------HHhhhhcccCCcceeehhhhccchhHHHHHHHH-----HHhhhhh
Q 035744 540 VYYVFGFLL-IVLVLLVVVCAEVSL----------VLTYMHLCVEDWKWWWKSFFASGSVAIYIFLYS-----INYLVFD 603 (653)
Q Consensus 540 ~yy~fgfL~-i~~iilii~~a~vsI----------~~tY~~L~~Edy~WwWrSF~~~gs~~~y~flYs-----i~y~~~~ 603 (653)
..+-||.++ +++++.++|....+. -.+..-...-+++|.-|+.-.-|++.+++.+|- +||-..|
T Consensus 30 ~~w~~Gsll~~~~~~qiiTGi~L~~~Y~p~~~~Af~Sv~~i~~~v~~Gw~iR~~H~~gas~~f~~~ylHi~R~~~~gsy~ 109 (381)
T MTH00053 30 YLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYT 109 (381)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHheccCChHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 346778775 444445544432221 111112234479999999999999999888773 3443333
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHhhhHHHHHHH
Q 035744 604 LRNLSGPVSATLYLGYSLFMVLAIMLATGTVGFLSSF 640 (653)
Q Consensus 604 ~~~~~g~~~~~lyf~Ys~l~s~~~~l~~GtiGflas~ 640 (653)
. +....+..++++.-+...=...-|-.|=.||.++-
T Consensus 110 ~-~~~W~~Gv~l~~l~m~~af~GYvLpw~qms~w~~t 145 (381)
T MTH00053 110 K-IIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAAT 145 (381)
T ss_pred C-chHHHhhHHHHHHHHHHHHHHhccchhhhhhHHHH
Confidence 3 44455555555555554444444555555554443
No 38
>PRK12307 putative sialic acid transporter; Provisional
Probab=22.79 E-value=4.9e+02 Score=28.00 Aligned_cols=24 Identities=17% Similarity=-0.040 Sum_probs=16.5
Q ss_pred HHHHHHHHhhhhhhhhHhhHhhhc
Q 035744 391 MLFIYMILGVAAGYVAVRLWRTIG 414 (653)
Q Consensus 391 ~i~~y~~~~~iaGyvS~~lyk~~~ 414 (653)
....+.+.+.++....+++-+.++
T Consensus 271 ~~~~~~~~~~~g~~~~g~l~dr~~ 294 (426)
T PRK12307 271 LMTAAAFGTVLGNIVWGLCADRIG 294 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344556667777788888777676
No 39
>MTH00033 CYTB cytochrome b; Provisional
Probab=22.41 E-value=1.7e+02 Score=32.64 Aligned_cols=98 Identities=17% Similarity=0.301 Sum_probs=57.4
Q ss_pred hhHHHHHHHH-HHHHHHHHHHHHHHHHhhhhc------------c-cCCcceeehhhhccchhHHHHHHHH-----HHhh
Q 035744 540 VYYVFGFLLI-VLVLLVVVCAEVSLVLTYMHL------------C-VEDWKWWWKSFFASGSVAIYIFLYS-----INYL 600 (653)
Q Consensus 540 ~yy~fgfL~i-~~iilii~~a~vsI~~tY~~L------------~-~Edy~WwWrSF~~~gs~~~y~flYs-----i~y~ 600 (653)
..+-+|.++. ++++.++|... +..|++= + .-+++|..|+.-.-|++.+++.+|. +||-
T Consensus 26 ~~w~~Gsll~~~~~~qiiTGi~---La~~Y~p~~~~Af~Sv~~i~~~v~~Gw~iR~~H~~gAs~~f~~~ylHi~R~~~~g 102 (383)
T MTH00033 26 YWWNFGSLLCLCLGIQILTGVL---LAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYG 102 (383)
T ss_pred hHhhHHHHHHHHHHHHHHHHHH---HHhhhcCCCcchHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3467888764 44455544432 2233332 2 3478999999999999988887773 3332
Q ss_pred hhhccccCCcchhhhHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 035744 601 VFDLRNLSGPVSATLYLGYSLFMVLAIMLATGTVGFLSSFW 641 (653)
Q Consensus 601 ~~~~~~~~g~~~~~lyf~Ys~l~s~~~~l~~GtiGflas~~ 641 (653)
..+. +....+..++++.-+...=...-|-.|-.||.++-.
T Consensus 103 sY~r-~~~W~~Gv~ll~l~m~~aF~GYvLpw~qms~w~~~V 142 (383)
T MTH00033 103 GYSR-VLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATV 142 (383)
T ss_pred cccC-hHHHHHhHHHHHHHHHHHHhhhcccccchhhHHHHH
Confidence 2232 445555666666555555455555566666655543
No 40
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=22.27 E-value=4.4e+02 Score=28.25 Aligned_cols=69 Identities=14% Similarity=0.155 Sum_probs=38.8
Q ss_pred ccccCCCCCc-chhhhhhccchHHHHHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHhhhhhhhhHhhHhhhc
Q 035744 341 GDVFRAPNNA-GLLCIMVGNGVQILGMAVVTIFFAALGFMSPASRGTLITGMLFIYMILGVAAGYVAVRLWRTIG 414 (653)
Q Consensus 341 gDVFR~P~~~-~lLs~lvG~G~Qll~~~~~~l~~a~lg~lsp~~rg~l~t~~i~~y~~~~~iaGyvS~~lyk~~~ 414 (653)
.+++|.|+-. .++..++-.+.+..........+.-.|. ++ .....+..+.++..++.+..++|+.+.++
T Consensus 199 ~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~-s~----~~~g~l~~~~~~~~i~~~~~~~~l~~r~g 268 (382)
T TIGR00902 199 IALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGI-SA----SATGLLWGIGVLAEIIIFAFSNKLFQNCS 268 (382)
T ss_pred HHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CH----hHHHHHHHHHHHHHHHHHHHhHHHHhhCC
Confidence 3678887642 2233444344444444444444443332 22 22333445577788888888999888777
No 41
>MTH00119 CYTB cytochrome b; Provisional
Probab=21.91 E-value=2.3e+02 Score=31.59 Aligned_cols=98 Identities=16% Similarity=0.250 Sum_probs=58.5
Q ss_pred hhHHHHHHHH-HHHHHHHHHHHHHHHHhhhhc-------------ccCCcceeehhhhccchhHHHHHHHH-----HHhh
Q 035744 540 VYYVFGFLLI-VLVLLVVVCAEVSLVLTYMHL-------------CVEDWKWWWKSFFASGSVAIYIFLYS-----INYL 600 (653)
Q Consensus 540 ~yy~fgfL~i-~~iilii~~a~vsI~~tY~~L-------------~~Edy~WwWrSF~~~gs~~~y~flYs-----i~y~ 600 (653)
..|.+|+++. ++++.++|... +..|++= +..+++|.-|+.-.-|++..++.+|- ++|-
T Consensus 30 ~~~~~G~ll~~~~~~qiitG~~---L~~~Y~p~~~~a~~Sv~~i~~~v~~G~~iR~~H~~ga~~~~~~~~lH~~r~~~~g 106 (380)
T MTH00119 30 AWWNFGSLLGLCLITQILTGLF---LAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYG 106 (380)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH---HHHHhcCCchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4578898764 44445544432 2233332 23468999999999888888887762 2333
Q ss_pred hhhccccCCcchhhhHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 035744 601 VFDLRNLSGPVSATLYLGYSLFMVLAIMLATGTVGFLSSFW 641 (653)
Q Consensus 601 ~~~~~~~~g~~~~~lyf~Ys~l~s~~~~l~~GtiGflas~~ 641 (653)
..|. +..-.+..++++.-+...=....|-.|-.||.++-.
T Consensus 107 sy~~-~~~W~~Gv~l~~l~~~~~f~Gy~Lpw~q~s~wa~~v 146 (380)
T MTH00119 107 SYLY-KETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATV 146 (380)
T ss_pred eecc-cchhhhhhHHHHHHHHHHHHhcccchhhhhhHHHHH
Confidence 3333 455566666666655555455555566666655543
No 42
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=21.86 E-value=2.8e+02 Score=32.82 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=25.1
Q ss_pred CCCCcchHHHHHHHHHHHHhhhhhhhhHhh
Q 035744 380 SPASRGTLITGMLFIYMILGVAAGYVAVRL 409 (653)
Q Consensus 380 sp~~rg~l~t~~i~~y~~~~~iaGyvS~~l 409 (653)
++...|.+.+..-+-+++++++.||.++|.
T Consensus 66 ss~~~G~i~s~~~i~~~~~~i~v~~~~~r~ 95 (633)
T TIGR00805 66 STSSSGLINGSYEIGNLLLIIFVSYFGTKL 95 (633)
T ss_pred CCCcceeeeehhhHHHHHHHHHHHHhhccc
Confidence 446678888888889999999999998873
No 43
>cd00284 Cytochrome_b_N Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Probab=21.83 E-value=1.8e+02 Score=29.46 Aligned_cols=99 Identities=19% Similarity=0.339 Sum_probs=57.3
Q ss_pred hhHHHHHHH-HHHHHHHHHHHHHHHHHhhhhc-------------ccCCcceeehhhhccchhHHHHHHHH-----HHhh
Q 035744 540 VYYVFGFLL-IVLVLLVVVCAEVSLVLTYMHL-------------CVEDWKWWWKSFFASGSVAIYIFLYS-----INYL 600 (653)
Q Consensus 540 ~yy~fgfL~-i~~iilii~~a~vsI~~tY~~L-------------~~Edy~WwWrSF~~~gs~~~y~flYs-----i~y~ 600 (653)
..|.+|+++ +++++.++|-...+ .|++= ...+++|..|+.-.-|++..++++|. ++|-
T Consensus 21 ~~~~~G~ll~~~~~iqiiTGi~La---~~Y~p~~~~A~~Sv~~i~~ev~~G~liR~~H~~gas~~~~~~~lH~~r~~~~g 97 (200)
T cd00284 21 YWWNFGSLLGTCLVIQILTGVFLA---MHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYG 97 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHcCChHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788765 44555555543332 23332 23468999999998888888887763 2232
Q ss_pred hhh-ccccCCcchhhhHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 035744 601 VFD-LRNLSGPVSATLYLGYSLFMVLAIMLATGTVGFLSSFW 641 (653)
Q Consensus 601 ~~~-~~~~~g~~~~~lyf~Ys~l~s~~~~l~~GtiGflas~~ 641 (653)
..| -++....+..++++.-+...=...-|-.|-.||.+.-.
T Consensus 98 sY~~pre~~W~~G~~l~~l~~~~af~GY~Lpw~q~s~w~~~v 139 (200)
T cd00284 98 SYKKPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATV 139 (200)
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHcccccCchhhhhHHHHH
Confidence 222 12445555666666555555555556666666665544
No 44
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=21.74 E-value=4.2e+02 Score=28.96 Aligned_cols=90 Identities=20% Similarity=0.212 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhhhhhhhhHhhHhhhcCCCCchhhHHHhhhhhhhhHHHHHHHHHHHHHHHhhcCCCCcChHHHHHHHHH
Q 035744 388 ITGMLFIYMILGVAAGYVAVRLWRTIGCGDLKGWISVAWKAACFFPGIAFLILTTLNFLLWGSHSTGAIPFSLFVILLLL 467 (653)
Q Consensus 388 ~t~~i~~y~~~~~iaGyvS~~lyk~~~~g~~~~Wk~~~~lt~~~~P~~~~~i~~~lN~i~~~~~Ss~aipf~ti~~l~~l 467 (653)
+..++++|.++..+++|+-. .+|.+. + |.+-.-.+..++-.+=+.+-.++-.+...--+...+||-.-+ +
T Consensus 45 ligai~~~li~~~~~~~~~~-~~~~le---~--~i~k~~~~~ilf~tiGLiiGLlia~l~~~pL~~~~ip~~~~i----i 114 (356)
T COG4956 45 LIGAIIFFLISFWFGKYVLN-WLKRLE---E--QIRKLPVTTILFGTIGLIIGLLIAVLLSSPLFLLPIPFISTI----I 114 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHH---H--HHHhcCHHHHHHHHHHHHHHHHHHHHHhhHHhhCCccHHHhH----H
Confidence 45677788888888887654 455554 2 543333333444433222222222222222234455532222 2
Q ss_pred HHHhhhhhhhhhhhhhccCC
Q 035744 468 WFCISVPLTLFGGYLGAKAP 487 (653)
Q Consensus 468 w~~vs~PL~~iG~~~g~k~~ 487 (653)
-+++++-|.++|.-+|.|+.
T Consensus 115 ~vi~t~il~y~G~~~~~k~~ 134 (356)
T COG4956 115 PVILTIILAYFGFQLADKKR 134 (356)
T ss_pred HHHHHHHHHHHhhHHhhhhh
Confidence 23466667788888887764
No 45
>PF12271 Chs3p: Chitin synthase III catalytic subunit; InterPro: IPR022057 This family of proteins is found in eukaryotes. Proteins in this family are typically between 288 and 332 amino acids in length. This family is the catalytic domain of chitin synthase III. Chitin is a major component of fungal cell walls and this enzyme is responsible for its formation.
Probab=20.49 E-value=1.1e+03 Score=25.51 Aligned_cols=123 Identities=16% Similarity=0.201 Sum_probs=73.1
Q ss_pred cchHHHHHHHH---HHHHHHhcccCCCCcchHHHHHHHHH--HHHhhhhhhhhHhhHhhhcCC-CCchhhHHHhhhhhhh
Q 035744 359 NGVQILGMAVV---TIFFAALGFMSPASRGTLITGMLFIY--MILGVAAGYVAVRLWRTIGCG-DLKGWISVAWKAACFF 432 (653)
Q Consensus 359 ~G~Qll~~~~~---~l~~a~lg~lsp~~rg~l~t~~i~~y--~~~~~iaGyvS~~lyk~~~~g-~~~~Wk~~~~lt~~~~ 432 (653)
+.+|+...+.. .++-+.+|+.- ...|+..+..++-- ++..+.+||+|--..|.+. | ..++-.--......++
T Consensus 118 tAi~~g~~~a~~w~Ll~Ng~vgfQl-~eDGT~~Sl~ll~~ss~~~f~~t~~isl~Tf~~w~-~~~~~~~~~~Lfvl~~l~ 195 (293)
T PF12271_consen 118 TAIQIGLISATCWCLLINGFVGFQL-WEDGTPLSLWLLRGSSLILFIGTFYISLDTFKSWT-GYLSPTNTIALFVLYYLL 195 (293)
T ss_pred HHHHHHHHHHHHHHHHHhhhheeee-ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cCCCCCCcchhHHHHHHH
Confidence 34565544332 33335677653 46777666444321 1233455677766666554 3 1101122334455789
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCcChHHHHHHHHHHHHhhhhhhhhhhhhh
Q 035744 433 PGIAFLILTTLNFLLWGSHSTGAIPFSLFVILLLLWFCISVPLTLFGGYLG 483 (653)
Q Consensus 433 P~~~~~i~~~lN~i~~~~~Ss~aipf~ti~~l~~lw~~vs~PL~~iG~~~g 483 (653)
|++.+.+++++..++-..-=-.--|.+.++.-.+++..-++-.-.++-.++
T Consensus 196 p~i~l~~Y~v~q~~lv~~vL~e~wp~g~i~~~~~fFv~gQv~~y~~S~~IC 246 (293)
T PF12271_consen 196 PAIFLVIYVVLQLILVLRVLGERWPLGYILLGVFFFVAGQVFLYVFSTHIC 246 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHhhHHHh
Confidence 999999999988887665555566888888777777776665555555554
No 46
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=20.47 E-value=57 Score=25.69 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=13.8
Q ss_pred ccccccCCCCHHHHHHHHHHHHh
Q 035744 100 IFLCKTDPLSKDNFELLKRRIDE 122 (653)
Q Consensus 100 c~lC~~~~~t~~~~~~l~~~I~~ 122 (653)
|++|.+ .++++..+.|.+-+++
T Consensus 23 CPlC~r-~l~~e~~~~li~~~~~ 44 (54)
T PF04423_consen 23 CPLCGR-PLDEEHRQELIKKYKS 44 (54)
T ss_dssp -TTT---EE-HHHHHHHHHHHHH
T ss_pred CCCCCC-CCCHHHHHHHHHHHHH
Confidence 699999 9999888777665554
No 47
>PLN02776 prenyltransferase
Probab=20.03 E-value=1.2e+03 Score=25.72 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=14.4
Q ss_pred ccceEEeccccCCCCCcchhhhhhcc
Q 035744 334 SGWKLVVGDVFRAPNNAGLLCIMVGN 359 (653)
Q Consensus 334 ~GWKlvhgDVFR~P~~~~lLs~lvG~ 359 (653)
...-+..|++ +|++...+++..+.
T Consensus 64 ~~RPLpsGri--s~~~A~~~~~~l~~ 87 (341)
T PLN02776 64 MRRPLPSGRI--SVPHAVAWAVVVGA 87 (341)
T ss_pred CCCCCCCCCC--CHHHHHHHHHHHHH
Confidence 3556667765 66666666555444
Done!