Query 035744
Match_columns 653
No_of_seqs 125 out of 658
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 09:48:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035744.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035744hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 35.4 59 0.002 26.9 5.4 29 283-311 7-35 (79)
2 1pw4_A Glycerol-3-phosphate tr 34.4 1.3E+02 0.0045 30.6 9.3 25 389-413 291-315 (451)
3 2elu_A Zinc finger protein 406 23.0 37 0.0013 23.5 1.6 24 96-123 9-32 (37)
4 2qjy_A Cytochrome B; cytochrom 21.8 1.4E+02 0.0048 32.5 6.8 70 572-641 86-161 (445)
5 3o7q_A L-fucose-proton symport 21.5 1.2E+02 0.0042 30.7 6.2 68 342-414 253-323 (438)
6 3cx5_C Cytochrome B-C1 complex 20.4 1.4E+02 0.0049 31.8 6.4 70 572-641 71-146 (385)
7 1vf5_A Cytochrome B6; photosyn 16.5 1.6E+02 0.0055 28.9 5.2 67 573-639 76-148 (215)
8 1pp9_C Cytochrome B; cytochrom 14.7 1.9E+02 0.0066 30.7 5.7 67 573-640 73-144 (379)
9 3j21_R 50S ribosomal protein L 13.7 91 0.0031 26.9 2.3 27 30-58 33-59 (97)
10 1vq8_Q 50S ribosomal protein L 12.8 1E+02 0.0034 26.6 2.3 27 30-58 32-58 (96)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=35.35 E-value=59 Score=26.89 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=19.0
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 035744 283 KVHWFSILNSLMVITFLAGIVLVIFLRTV 311 (653)
Q Consensus 283 ~ihw~SIiNS~iivl~L~~~v~~Il~R~l 311 (653)
..+...|+-..+..++|.|++.+++.|.+
T Consensus 7 ~~n~~~Iv~gvi~gilliGllllliwk~~ 35 (79)
T 2knc_B 7 GPDILVVLLSVMGAILLIGLAALLIWKLL 35 (79)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556676666666677777777777654
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=34.41 E-value=1.3e+02 Score=30.59 Aligned_cols=25 Identities=12% Similarity=0.264 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhhhhhhhHhhHhhh
Q 035744 389 TGMLFIYMILGVAAGYVAVRLWRTI 413 (653)
Q Consensus 389 t~~i~~y~~~~~iaGyvS~~lyk~~ 413 (653)
......+.+++.+++..++++.+.+
T Consensus 291 ~~~~~~~~~~~~~~~~~~g~l~~~~ 315 (451)
T 1pw4_A 291 SWAYFLYEYAGIPGTLLCGWMSDKV 315 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667777778888887776
No 3
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=22.99 E-value=37 Score=23.54 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=17.6
Q ss_pred ccccccccccCCCCHHHHHHHHHHHHhc
Q 035744 96 NETDIFLCKTDPLSKDNFELLKRRIDEM 123 (653)
Q Consensus 96 ~~~~c~lC~~~~~t~~~~~~l~~~I~~~ 123 (653)
.+- |..|++ +++ |++.|.+.|++.
T Consensus 9 kqh-crfckk-kys--dvknlikhire~ 32 (37)
T 2elu_A 9 KQH-CRFCKK-KYS--DVKNLIKHIRDA 32 (37)
T ss_dssp CCE-ETTTTE-ECS--SHHHHHHHHHHT
T ss_pred HHH-HHHHHH-HHH--HHHHHHHHHHHh
Confidence 345 888998 787 577788888763
No 4
>2qjy_A Cytochrome B; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_A* 2qjk_A* 2qjp_A* 1zrt_C* 2yiu_A*
Probab=21.79 E-value=1.4e+02 Score=32.48 Aligned_cols=70 Identities=17% Similarity=0.288 Sum_probs=46.1
Q ss_pred cCCcceeehhhhccchhHHHHHHHH-----HHhhhhhc-cccCCcchhhhHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 035744 572 VEDWKWWWKSFFASGSVAIYIFLYS-----INYLVFDL-RNLSGPVSATLYLGYSLFMVLAIMLATGTVGFLSSFW 641 (653)
Q Consensus 572 ~Edy~WwWrSF~~~gs~~~y~flYs-----i~y~~~~~-~~~~g~~~~~lyf~Ys~l~s~~~~l~~GtiGflas~~ 641 (653)
.-||+|-.|+.-.-|++.+++.+|- +||--.|- ++.+..+..++++.-|+..=...-|=-|-.||.++-.
T Consensus 86 dV~~GwliR~~H~~gAs~ffi~iylHi~RglyygsY~~Pr~~~W~~Gv~l~ll~m~taF~GYvLPwgQmSfWgatV 161 (445)
T 2qjy_A 86 NVNGGFMLRYLHANGASLFFIAVYLHIFRGLYYGSYKAPREVTWIVGMLIYLAMMATAFMGYVLPWGQMSFWGATV 161 (445)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHH
T ss_pred hCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccceeeehHHHHHHHHHHHHHheeccCCccchHHHHH
Confidence 3489999999999999999888883 34432231 2455556666666666665555556666666665544
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=21.45 E-value=1.2e+02 Score=30.73 Aligned_cols=68 Identities=12% Similarity=0.120 Sum_probs=33.4
Q ss_pred cccCCCCCc-chhhhhhccchHHHHHHHHHHH-HHHh-cccCCCCcchHHHHHHHHHHHHhhhhhhhhHhhHhhhc
Q 035744 342 DVFRAPNNA-GLLCIMVGNGVQILGMAVVTIF-FAAL-GFMSPASRGTLITGMLFIYMILGVAAGYVAVRLWRTIG 414 (653)
Q Consensus 342 DVFR~P~~~-~lLs~lvG~G~Qll~~~~~~l~-~a~l-g~lsp~~rg~l~t~~i~~y~~~~~iaGyvS~~lyk~~~ 414 (653)
+++|.|+-. .+++.++..+.+.......... +.-. |. ++ .........+.+.+.++..+++++-+.++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~----~~~~~~~~~~~~~~~~~~~~~g~l~~r~~ 323 (438)
T 3o7q_A 253 RLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGM-TA----GFAANYLTGTMVCFFIGRFTGTWLISRFA 323 (438)
T ss_dssp HHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTC-CH----HHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCc-ch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 677766532 2334444445454443333333 2221 21 11 22233344455667777777777777666
No 6
>3cx5_C Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.32.1.1 f.21.1.2 PDB: 3cxh_C* 1ezv_C* 1kb9_C* 1kyo_C* 1p84_C* 2ibz_C*
Probab=20.37 E-value=1.4e+02 Score=31.79 Aligned_cols=70 Identities=10% Similarity=0.120 Sum_probs=46.5
Q ss_pred cCCcceeehhhhccchhHHHHHHHH-----HHhhhhhc-cccCCcchhhhHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 035744 572 VEDWKWWWKSFFASGSVAIYIFLYS-----INYLVFDL-RNLSGPVSATLYLGYSLFMVLAIMLATGTVGFLSSFW 641 (653)
Q Consensus 572 ~Edy~WwWrSF~~~gs~~~y~flYs-----i~y~~~~~-~~~~g~~~~~lyf~Ys~l~s~~~~l~~GtiGflas~~ 641 (653)
.-||+|-.|+.-.-|++.+++.+|- +||--.|- ++.+..+..++++.-|+..=...-|--|-.||.++-.
T Consensus 71 dV~~GwliR~~H~~gAs~ffi~iylHi~Rglyygsy~~Pr~~~W~~Gv~l~ll~m~~aF~GYvLPwgQmS~WgatV 146 (385)
T 3cx5_C 71 DVHNGYILRYLHANGASFFFMVMFMHMAKGLYYGSYRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATV 146 (385)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHCBHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcceeeecHHHHHHHHHHHHHhhhccCCcchhHHHHH
Confidence 3489999999999999999888883 34433331 2455556666666666666566666666666665544
No 7
>1vf5_A Cytochrome B6; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.21.1.2 PDB: 2d2c_A* 2e74_A* 2e75_A* 2e76_A* 2zt9_A* 1q90_B*
Probab=16.48 E-value=1.6e+02 Score=28.89 Aligned_cols=67 Identities=16% Similarity=0.148 Sum_probs=37.4
Q ss_pred CCcceeehhhhccchhHHHHHHHH-----HHhhhhhc-cccCCcchhhhHHHHHHHHHHHHHHHhhhHHHHHH
Q 035744 573 EDWKWWWKSFFASGSVAIYIFLYS-----INYLVFDL-RNLSGPVSATLYLGYSLFMVLAIMLATGTVGFLSS 639 (653)
Q Consensus 573 Edy~WwWrSF~~~gs~~~y~flYs-----i~y~~~~~-~~~~g~~~~~lyf~Ys~l~s~~~~l~~GtiGflas 639 (653)
-||+|--|+.-.-|++.+++.+|- +||--.+. ++.+..+..++++.-|...-...-|-.|-.+|.++
T Consensus 76 v~~GwliR~~H~~gAs~ffi~~ylHi~Rglyygsy~~p~~~~W~~Gv~l~~l~m~~aF~GYvLPwgqmS~wga 148 (215)
T 1vf5_A 76 VSFGWLIRSIHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWISGVILAVITVSFGVTGYSLPWDQVGYWAV 148 (215)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSSCSHHHHHHHHHHHHHHHHHHHHTTTTCBHHHHHHH
T ss_pred cccchhhccchHHHHHHHHHHHHHHHHHHHHhhhcccCCCceeHhHHHHHHHHHHHHHcccccCCCccchhhH
Confidence 489999999999999999888883 33322221 13334444455444433333333333344444433
No 8
>1pp9_C Cytochrome B; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.32.1.1 f.21.1.2 PDB: 1bgy_C* 1be3_C* 1l0n_C* 1ntk_C* 1ntm_C* 1ntz_C* 1nu1_C* 1l0l_C* 1ppj_C* 1sqb_C* 1sqp_C* 1sqq_C* 1sqv_C* 1sqx_C* 2a06_C* 2fyu_C* 2ybb_C* 1qcr_C* 3l70_C* 2bcc_C* ...
Probab=14.67 E-value=1.9e+02 Score=30.73 Aligned_cols=67 Identities=18% Similarity=0.347 Sum_probs=41.3
Q ss_pred CCcceeehhhhccchhHHHHHHHH-----HHhhhhhccccCCcchhhhHHHHHHHHHHHHHHHhhhHHHHHHH
Q 035744 573 EDWKWWWKSFFASGSVAIYIFLYS-----INYLVFDLRNLSGPVSATLYLGYSLFMVLAIMLATGTVGFLSSF 640 (653)
Q Consensus 573 Edy~WwWrSF~~~gs~~~y~flYs-----i~y~~~~~~~~~g~~~~~lyf~Ys~l~s~~~~l~~GtiGflas~ 640 (653)
-||+|-.|+.-.-|++.+++.+|- +||--.|. .-+..+..++++.-|+..=...-|-.|-.||.++-
T Consensus 73 V~~GwliR~~H~~gAs~ffi~~ylHi~Rglyygsy~~-~~~W~~Gv~l~ll~m~~aF~GYvLPwgQmS~Wgat 144 (379)
T 1pp9_C 73 VNYGWIIRYMHANGASMFFICLYMHVGRGLYYGSYTF-LETWNIGVILLLTVMATAFMGYVLPWGQMSFWGAT 144 (379)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGS-HHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheecC-cceehhhHHHHHHHHHHHheeeeccCcchhHHHHH
Confidence 479999999999999999888873 34433333 22444455555555554444444555555555443
No 9
>3j21_R 50S ribosomal protein L21E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=13.68 E-value=91 Score=26.91 Aligned_cols=27 Identities=19% Similarity=0.370 Sum_probs=20.8
Q ss_pred CCCCCCCcEEEEEeecccCCCCccccccc
Q 035744 30 HKHVVGDPLSVKVNSITSIDTEMPFSYYS 58 (653)
Q Consensus 30 ~~Y~~Gd~V~v~vNkl~s~~~~~~Y~Yy~ 58 (653)
..|++||.|++.+|- +...-.|+.+|+
T Consensus 33 ~~yk~Gd~VdIk~~g--svqKGmPhk~yH 59 (97)
T 3j21_R 33 QEFEVGQRVHIVIEP--SYHKGMPDPRFH 59 (97)
T ss_dssp CCCCTTCEEEECCCT--TCCSSCCCGGGT
T ss_pred HHhcCCCEEEEEecC--ceEcCCCCcccC
Confidence 689999999997763 345567888774
No 10
>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q* 1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q* 1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q* 1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ...
Probab=12.76 E-value=1e+02 Score=26.58 Aligned_cols=27 Identities=7% Similarity=0.194 Sum_probs=20.4
Q ss_pred CCCCCCCcEEEEEeecccCCCCccccccc
Q 035744 30 HKHVVGDPLSVKVNSITSIDTEMPFSYYS 58 (653)
Q Consensus 30 ~~Y~~Gd~V~v~vNkl~s~~~~~~Y~Yy~ 58 (653)
..|++||.|++.+|-- ...-+|+.+|+
T Consensus 32 ~~yk~Gd~VdIk~~~s--vqKGmPhk~yH 58 (96)
T 1vq8_Q 32 EEFDDGEKVHLKIDPS--VPNGRFHPRFD 58 (96)
T ss_dssp CCCCTTCEEEECCCTT--CCSSCCCGGGT
T ss_pred HHcCCCCEEEEEecCC--ccCCCCcccCC
Confidence 6799999999987643 34457888774
Done!