Query 035744
Match_columns 653
No_of_seqs 125 out of 658
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 09:49:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035744.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035744hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vqoq1 b.34.5.1 (Q:1-95) Ribo 24.7 16 0.0012 29.5 2.1 27 30-58 31-57 (95)
2 d1pv7a_ f.38.1.2 (A:) Lactose 24.0 72 0.0052 28.7 7.3 26 389-414 262-287 (417)
3 d1ppjc2 f.21.1.2 (C:15-260) Mi 19.0 85 0.0062 29.0 6.5 99 540-641 15-131 (246)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 17.7 3.4E+02 0.025 24.6 13.2 24 391-414 290-313 (447)
5 d3cx5c2 f.21.1.2 (C:1-261) Mit 11.7 2.7E+02 0.019 25.6 7.9 103 540-644 28-149 (261)
6 d2iuba2 f.17.3.1 (A:286-349) M 10.2 62 0.0045 23.4 2.0 26 461-486 5-30 (64)
7 d1pv7a_ f.38.1.2 (A:) Lactose 8.7 2.8E+02 0.02 24.4 6.8 11 477-487 394-404 (417)
8 d1ijwc_ a.4.1.2 (C:) HIN recom 7.0 1.4E+02 0.0099 20.4 2.6 18 107-124 5-22 (47)
9 d1r7ma2 d.95.2.1 (A:121-225) D 6.8 1.2E+02 0.0087 24.0 2.6 29 101-130 41-69 (105)
10 d2asba1 b.40.4.5 (A:108-183) S 6.7 1.5E+02 0.011 22.3 2.9 19 30-48 48-66 (76)
No 1
>d1vqoq1 b.34.5.1 (Q:1-95) Ribosomal proteins L21e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=24.75 E-value=16 Score=29.49 Aligned_cols=27 Identities=11% Similarity=0.244 Sum_probs=21.6
Q ss_pred CCCCCCCcEEEEEeecccCCCCccccccc
Q 035744 30 HKHVVGDPLSVKVNSITSIDTEMPFSYYS 58 (653)
Q Consensus 30 ~~Y~~Gd~V~v~vNkl~s~~~~~~Y~Yy~ 58 (653)
+.|++||.|.|.+|- |...-+|+.+|+
T Consensus 31 ~~y~~GD~V~I~idp--sv~kGmPh~~yh 57 (95)
T d1vqoq1 31 EEFDDGEKVHLKIDP--SVPNGRFHPRFD 57 (95)
T ss_dssp CCCCTTCEEEECCCT--TCCSSCCCGGGT
T ss_pred eeccCCCEEEEEecC--CeecCccceeec
Confidence 689999999998875 445578888874
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=24.00 E-value=72 Score=28.74 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhhhhhhhhHhhHhhhc
Q 035744 389 TGMLFIYMILGVAAGYVAVRLWRTIG 414 (653)
Q Consensus 389 t~~i~~y~~~~~iaGyvS~~lyk~~~ 414 (653)
........+.+.+++..++++-+..+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~l~~r~~ 287 (417)
T d1pv7a_ 262 GYVTTMGELLNASIMFFAPLIINRIG 287 (417)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHC
T ss_pred cccccccccccccchhhhhhhhcccc
Confidence 33444555667777777887777666
No 3
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=18.98 E-value=85 Score=28.97 Aligned_cols=99 Identities=17% Similarity=0.300 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-------------cCCcceeehhhhccchhHHHHHHHH-----HHhhh
Q 035744 540 VYYVFGFLLIVLVLLVVVCAEVSLVLTYMHLC-------------VEDWKWWWKSFFASGSVAIYIFLYS-----INYLV 601 (653)
Q Consensus 540 ~yy~fgfL~i~~iilii~~a~vsI~~tY~~L~-------------~Edy~WwWrSF~~~gs~~~y~flYs-----i~y~~ 601 (653)
.+|.+|.++...+++-+++. -.+..|+.-+ .-+++|-.|+.-.-|++..++.+|- ++|-.
T Consensus 15 ~~w~~G~ll~~~~~iqiiTG--i~L~~~Y~p~~~~A~~Sv~~i~~~v~~G~~iR~~H~~gas~~~~~~~lHm~r~~~~~s 92 (246)
T d1ppjc2 15 SWWNFGSLLGICLILQILTG--LFLAMHYTSDTTTAFSSVTHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLYYGS 92 (246)
T ss_dssp GGGSHHHHHHHHHHHHHHHH--HHHHTTCCCCTTTHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHcCChHHHHHHHHHhcCcccCchhhcchhHhHHHHHHHHHHHHHHHHHHhcC
Confidence 45667877665444433331 2233344333 2368999999988888888777762 33323
Q ss_pred hhccccCCcchhhhHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 035744 602 FDLRNLSGPVSATLYLGYSLFMVLAIMLATGTVGFLSSFW 641 (653)
Q Consensus 602 ~~~~~~~g~~~~~lyf~Ys~l~s~~~~l~~GtiGflas~~ 641 (653)
.|. .-.-.+..++|+.-+...=...-|-.|-.||.++-.
T Consensus 93 y~~-~~~w~~G~~l~~l~m~~af~GY~Lpw~qms~wa~~V 131 (246)
T d1ppjc2 93 YTF-LETWNIGVILLLTVMATAFMGYVLPWGQMSFWGATV 131 (246)
T ss_dssp GGS-HHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHH
T ss_pred ccc-hHHHHHHHHHHHHHHHHHHeeccCCCcchhHHHHHH
Confidence 233 112233444444444444444444455555555443
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=17.74 E-value=3.4e+02 Score=24.56 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=14.5
Q ss_pred HHHHHHHHhhhhhhhhHhhHhhhc
Q 035744 391 MLFIYMILGVAAGYVAVRLWRTIG 414 (653)
Q Consensus 391 ~i~~y~~~~~iaGyvS~~lyk~~~ 414 (653)
...++.+.+.++..+++++-+.++
T Consensus 290 ~~~~~~~~~~~~~~~~g~~~~~~~ 313 (447)
T d1pw4a_ 290 AYFLYEYAGIPGTLLCGWMSDKVF 313 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hhhcchhhhhhhhhhhhhhhhhcc
Confidence 344455566666666776666565
No 5
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.65 E-value=2.7e+02 Score=25.59 Aligned_cols=103 Identities=11% Similarity=0.170 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc-------------CCcceeehhhhccchhHHHHHHHH-----HHhhh
Q 035744 540 VYYVFGFLLIVLVLLVVVCAEVSLVLTYMHLCV-------------EDWKWWWKSFFASGSVAIYIFLYS-----INYLV 601 (653)
Q Consensus 540 ~yy~fgfL~i~~iilii~~a~vsI~~tY~~L~~-------------Edy~WwWrSF~~~gs~~~y~flYs-----i~y~~ 601 (653)
..|-+|.++...+++-+++. -.+..|++-+. -+++|-.|+.-.-|++.+++.+|- ++|-.
T Consensus 28 ~~w~~G~ll~~~~~iqiiTG--i~L~~~Y~p~~~~A~~Sv~~i~~~v~~Gw~iR~~H~~ga~~~~~~~~lH~~r~~~~gs 105 (261)
T d3cx5c2 28 YWWNMGSLLGLCLVIQIVTG--IFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFFFMVMFMHMAKGLYYGS 105 (261)
T ss_dssp GGGGHHHHHHHHHHHHHHHH--HHHHTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHheecCChHHHHHHHHHHHhhhccChhhhhcccccHHHHHHHHHHHHHHHHHhcc
Confidence 44667887766554433331 12233333332 268999999999999888887773 22222
Q ss_pred hhc-cccCCcchhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 035744 602 FDL-RNLSGPVSATLYLGYSLFMVLAIMLATGTVGFLSSFWFVH 644 (653)
Q Consensus 602 ~~~-~~~~g~~~~~lyf~Ys~l~s~~~~l~~GtiGflas~~FV~ 644 (653)
.|. +++.-.+..++++.-+...=....|-.|-.+|.++-....
T Consensus 106 y~~pre~~W~~Gv~l~~l~~~~af~GY~Lpw~q~s~w~~~Vit~ 149 (261)
T d3cx5c2 106 YRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITN 149 (261)
T ss_dssp TSTTCHHHHHHHHHHHHHHHHHHHHHHHHHCBHHHHHHHHHHHH
T ss_pred ccCccchhHHhhHHHHHHHHHHHHhhhhcCCCcchhhHHHHHHH
Confidence 221 1334556667777776666666777777777777665443
No 6
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=10.16 E-value=62 Score=23.36 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhccC
Q 035744 461 FVILLLLWFCISVPLTLFGGYLGAKA 486 (653)
Q Consensus 461 i~~l~~lw~~vs~PL~~iG~~~g~k~ 486 (653)
.+..+..+-.+-+|++++.|++|.+.
T Consensus 5 ~mk~lT~it~iflP~t~i~gifGMN~ 30 (64)
T d2iuba2 5 VMKVLTIIATIFMPLTFIAGIYGMNF 30 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCC---
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 35567777788899999999999754
No 7
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=8.71 E-value=2.8e+02 Score=24.37 Aligned_cols=11 Identities=9% Similarity=0.009 Sum_probs=4.6
Q ss_pred hhhhhhhccCC
Q 035744 477 LFGGYLGAKAP 487 (653)
Q Consensus 477 ~iG~~~g~k~~ 487 (653)
++..++-++.+
T Consensus 394 ~~~~~~l~~~~ 404 (417)
T d1pv7a_ 394 LISVFTLSGPG 404 (417)
T ss_dssp HHHHHHSCCSS
T ss_pred HHHHHhhcCCC
Confidence 33444444443
No 8
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=6.95 E-value=1.4e+02 Score=20.40 Aligned_cols=18 Identities=17% Similarity=0.266 Sum_probs=16.2
Q ss_pred CCCHHHHHHHHHHHHhcc
Q 035744 107 PLSKDNFELLKRRIDEMY 124 (653)
Q Consensus 107 ~~t~~~~~~l~~~I~~~Y 124 (653)
++|++|++.++++++++.
T Consensus 5 ~lt~~q~~~a~~l~~~G~ 22 (47)
T d1ijwc_ 5 AINKHEQEQISRLLEKGH 22 (47)
T ss_dssp SSCHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHCCC
Confidence 799999999999998775
No 9
>d1r7ma2 d.95.2.1 (A:121-225) DNA endonuclease I-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.78 E-value=1.2e+02 Score=23.97 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=24.8
Q ss_pred cccccCCCCHHHHHHHHHHHHhcceEEEEE
Q 035744 101 FLCKTDPLSKDNFELLKRRIDEMYQVNLIL 130 (653)
Q Consensus 101 ~lC~~~~~t~~~~~~l~~~I~~~Y~~~~~i 130 (653)
.+|.. .+|++|.+.|.+.+.+.|..+-.+
T Consensus 41 ~l~T~-~Ft~~e~~~L~~~L~~kf~l~~~i 69 (105)
T d1r7ma2 41 VLNTQ-SFTFEEVEYLVKGLRNKFQLNCYV 69 (105)
T ss_dssp EECCT-TSCHHHHHHHHHHHHHHHCCCEEE
T ss_pred EEEeC-CCCHHHHHHHHHHHHHHhCceEEE
Confidence 78987 899999999999999999765443
No 10
>d2asba1 b.40.4.5 (A:108-183) S1 domain of NusA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=6.68 E-value=1.5e+02 Score=22.26 Aligned_cols=19 Identities=21% Similarity=0.116 Sum_probs=16.3
Q ss_pred CCCCCCCcEEEEEeecccC
Q 035744 30 HKHVVGDPLSVKVNSITSI 48 (653)
Q Consensus 30 ~~Y~~Gd~V~v~vNkl~s~ 48 (653)
-.|+.||.|.+++-++...
T Consensus 48 E~y~~Gdrik~~i~~V~~~ 66 (76)
T d2asba1 48 ESYEHGNRLRCYVVGVTRG 66 (76)
T ss_dssp CCCCTTCEEEEEEEEEECC
T ss_pred cccCCCCEEEEEEEEEEec
Confidence 3499999999999999755
Done!