Query 035748
Match_columns 655
No_of_seqs 22 out of 24
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 06:02:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035748.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035748hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00200 WD40 WD40 domain, foun 98.0 0.0079 1.7E-07 52.9 25.6 229 161-430 9-250 (289)
2 cd00200 WD40 WD40 domain, foun 97.5 0.043 9.3E-07 48.4 20.7 171 162-364 52-230 (289)
3 PF03178 CPSF_A: CPSF A subuni 96.6 0.03 6.6E-07 56.3 12.5 139 153-303 13-202 (321)
4 PTZ00421 coronin; Provisional 95.7 2.6 5.7E-05 46.8 22.5 122 161-309 75-205 (493)
5 PF00780 CNH: CNH domain; Int 94.0 6.4 0.00014 38.4 19.7 232 180-432 8-258 (275)
6 PLN00181 protein SPA1-RELATED; 93.7 17 0.00036 41.9 28.5 110 176-310 457-571 (793)
7 PF14727 PHTB1_N: PTHB1 N-term 93.5 13 0.00029 41.1 21.1 287 140-498 2-318 (418)
8 PLN00181 protein SPA1-RELATED; 92.9 1.5 3.3E-05 50.0 13.4 107 179-302 630-737 (793)
9 PTZ00420 coronin; Provisional 92.4 25 0.00054 40.4 24.6 105 185-303 50-156 (568)
10 KOG0318 WD40 repeat stress pro 91.7 0.54 1.2E-05 53.3 7.8 75 160-244 442-518 (603)
11 KOG0296 Angio-associated migra 91.7 8.8 0.00019 42.4 16.5 252 161-456 64-337 (399)
12 KOG0266 WD40 repeat-containing 91.5 10 0.00022 41.1 17.0 119 180-322 216-341 (456)
13 KOG3621 WD40 repeat-containing 90.0 0.97 2.1E-05 52.6 8.0 230 176-430 42-315 (726)
14 KOG0266 WD40 repeat-containing 89.2 37 0.00081 37.0 18.8 145 144-319 144-292 (456)
15 KOG1517 Guanine nucleotide bin 88.9 1.8 4E-05 52.7 9.3 137 144-302 1141-1286(1387)
16 KOG0646 WD40 repeat protein [G 88.0 19 0.00041 40.8 15.7 227 157-412 77-328 (476)
17 PTZ00421 coronin; Provisional 87.6 21 0.00046 39.9 16.0 124 162-309 169-297 (493)
18 PF14783 BBS2_Mid: Ciliary BBS 87.4 18 0.0004 33.8 13.0 107 164-299 2-110 (111)
19 KOG0263 Transcription initiati 86.0 1.2 2.6E-05 51.9 5.6 71 162-243 578-649 (707)
20 KOG2106 Uncharacterized conser 85.3 4.5 9.7E-05 46.3 9.4 147 157-341 403-557 (626)
21 TIGR03300 assembly_YfgL outer 84.8 51 0.0011 33.9 22.2 221 180-426 146-376 (377)
22 PTZ00420 coronin; Provisional 84.6 84 0.0018 36.3 19.9 118 161-306 74-201 (568)
23 KOG0649 WD40 repeat protein [G 82.8 5.9 0.00013 42.2 8.5 61 177-244 20-90 (325)
24 KOG2048 WD40 repeat protein [G 80.7 15 0.00033 43.1 11.4 111 180-306 123-237 (691)
25 KOG0291 WD40-repeat-containing 79.3 20 0.00044 42.9 11.9 76 180-260 363-447 (893)
26 KOG0274 Cdc4 and related F-box 78.2 20 0.00044 40.7 11.4 172 165-345 282-488 (537)
27 KOG0315 G-protein beta subunit 77.9 13 0.00027 39.9 9.0 122 178-305 94-247 (311)
28 PRK11028 6-phosphogluconolacto 77.7 83 0.0018 31.7 24.8 225 181-430 5-259 (330)
29 KOG0310 Conserved WD40 repeat- 77.3 42 0.00092 38.3 13.2 182 285-495 80-306 (487)
30 KOG0310 Conserved WD40 repeat- 74.9 17 0.00037 41.3 9.5 142 161-310 107-277 (487)
31 KOG0294 WD40 repeat-containing 74.5 5 0.00011 43.7 5.1 107 162-301 44-155 (362)
32 PF00400 WD40: WD domain, G-be 70.6 15 0.00033 25.6 5.3 31 206-240 8-38 (39)
33 KOG1539 WD repeat protein [Gen 69.6 39 0.00084 40.9 11.1 160 182-368 175-362 (910)
34 KOG0650 WD40 repeat nucleolar 68.8 26 0.00056 41.2 9.3 59 373-432 530-598 (733)
35 PRK11028 6-phosphogluconolacto 65.7 1.6E+02 0.0034 29.8 24.5 246 152-430 25-305 (330)
36 PF12894 Apc4_WD40: Anaphase-p 65.6 12 0.00026 29.7 4.3 32 207-242 9-40 (47)
37 KOG0280 Uncharacterized conser 65.0 17 0.00038 39.4 6.7 90 150-247 109-199 (339)
38 KOG1517 Guanine nucleotide bin 63.9 33 0.00072 42.7 9.3 116 179-310 1221-1340(1387)
39 KOG2445 Nuclear pore complex c 63.7 53 0.0011 36.2 9.9 129 162-303 170-318 (361)
40 KOG1063 RNA polymerase II elon 63.6 31 0.00067 41.0 8.7 65 178-243 629-699 (764)
41 PF08596 Lgl_C: Lethal giant l 63.4 57 0.0012 35.7 10.3 91 146-244 70-174 (395)
42 KOG0268 Sof1-like rRNA process 62.6 14 0.00029 41.2 5.4 103 181-304 243-346 (433)
43 KOG4640 Anaphase-promoting com 62.4 15 0.00033 42.9 6.0 83 152-244 11-93 (665)
44 TIGR03866 PQQ_ABC_repeats PQQ- 62.3 1.4E+02 0.003 28.1 16.0 180 225-431 1-189 (300)
45 KOG2079 Vacuolar assembly/sort 62.3 15 0.00032 45.4 6.1 97 179-296 99-198 (1206)
46 KOG1240 Protein kinase contain 61.7 2.9E+02 0.0062 35.5 16.4 215 195-431 1035-1275(1431)
47 KOG3621 WD40 repeat-containing 60.1 1.5E+02 0.0032 35.7 13.2 163 179-354 88-298 (726)
48 TIGR02658 TTQ_MADH_Hv methylam 60.0 2.7E+02 0.0058 30.5 21.4 58 180-243 13-85 (352)
49 TIGR03300 assembly_YfgL outer 58.0 29 0.00063 35.7 6.7 55 180-240 321-376 (377)
50 PF03178 CPSF_A: CPSF A subuni 57.5 80 0.0017 32.2 9.7 82 151-244 119-203 (321)
51 KOG1587 Cytoplasmic dynein int 57.4 12 0.00026 42.9 4.2 111 132-253 394-529 (555)
52 TIGR03866 PQQ_ABC_repeats PQQ- 56.7 1.8E+02 0.0038 27.4 24.7 76 157-242 26-102 (300)
53 KOG0282 mRNA splicing factor [ 56.6 14 0.00031 42.0 4.4 57 179-239 444-501 (503)
54 KOG0315 G-protein beta subunit 55.9 1.1E+02 0.0024 33.2 10.4 118 161-307 40-158 (311)
55 KOG1063 RNA polymerase II elon 54.4 25 0.00053 41.7 6.0 92 150-242 653-762 (764)
56 KOG0275 Conserved WD40 repeat- 54.1 33 0.00071 38.1 6.5 138 161-310 213-386 (508)
57 KOG0263 Transcription initiati 53.2 64 0.0014 38.5 9.0 71 222-310 544-615 (707)
58 KOG0291 WD40-repeat-containing 53.1 5.2E+02 0.011 31.8 20.8 223 162-431 266-510 (893)
59 KOG0771 Prolactin regulatory e 53.0 72 0.0016 35.8 9.0 85 405-522 295-379 (398)
60 PF06977 SdiA-regulated: SdiA- 52.6 1.6E+02 0.0034 30.6 10.9 87 148-243 4-94 (248)
61 KOG0318 WD40 repeat stress pro 52.5 46 0.001 38.6 7.6 73 161-243 487-560 (603)
62 PF12894 Apc4_WD40: Anaphase-p 52.1 25 0.00055 27.9 4.0 43 152-200 2-44 (47)
63 KOG1539 WD repeat protein [Gen 52.0 38 0.00082 41.0 7.1 61 180-244 215-276 (910)
64 KOG0305 Anaphase promoting com 51.4 30 0.00066 39.3 6.0 101 179-302 229-330 (484)
65 KOG0306 WD40-repeat-containing 51.1 50 0.0011 39.8 7.8 75 159-244 63-138 (888)
66 PF14655 RAB3GAP2_N: Rab3 GTPa 51.0 18 0.00039 40.1 4.2 57 162-219 57-118 (415)
67 KOG1963 WD40 repeat protein [G 50.6 76 0.0017 38.3 9.2 46 284-330 216-269 (792)
68 KOG0284 Polyadenylation factor 49.8 48 0.001 37.5 7.1 125 146-301 81-208 (464)
69 KOG0276 Vesicle coat complex C 49.3 22 0.00047 42.0 4.5 50 187-240 33-82 (794)
70 KOG0296 Angio-associated migra 49.0 40 0.00086 37.6 6.2 59 179-242 338-397 (399)
71 KOG1273 WD40 repeat protein [G 49.0 47 0.001 36.8 6.7 61 179-243 35-95 (405)
72 PF03918 CcmH: Cytochrome C bi 48.5 6 0.00013 38.1 0.1 31 506-536 100-130 (148)
73 PF00400 WD40: WD domain, G-be 46.8 28 0.0006 24.3 3.2 29 161-195 11-39 (39)
74 KOG1897 Damage-specific DNA bi 46.6 6.1E+02 0.013 32.1 15.7 187 153-355 245-463 (1096)
75 KOG1896 mRNA cleavage and poly 46.2 1.8E+02 0.0039 37.0 11.5 133 163-301 1027-1211(1366)
76 KOG0302 Ribosome Assembly prot 45.8 81 0.0018 35.6 8.0 81 156-243 294-378 (440)
77 PF13360 PQQ_2: PQQ-like domai 44.7 2.7E+02 0.0059 26.1 15.5 57 285-342 36-97 (238)
78 PRK11138 outer membrane biogen 44.6 72 0.0016 33.5 7.2 56 181-242 337-393 (394)
79 KOG0307 Vesicle coat complex C 44.3 16 0.00034 44.8 2.6 129 181-310 131-292 (1049)
80 PF14779 BBS1: Ciliary BBSome 42.5 1.5E+02 0.0033 31.4 9.1 77 161-239 176-254 (257)
81 KOG2106 Uncharacterized conser 42.3 1.8E+02 0.0038 34.2 10.1 148 161-324 447-608 (626)
82 COG3088 CcmH Uncharacterized p 42.2 14 0.0003 36.5 1.4 35 499-533 94-131 (153)
83 PF01011 PQQ: PQQ enzyme repea 42.1 65 0.0014 23.7 4.7 28 182-209 3-31 (38)
84 KOG0283 WD40 repeat-containing 41.3 1.8E+02 0.0038 35.0 10.2 136 147-302 376-531 (712)
85 KOG0306 WD40-repeat-containing 40.0 1.2E+02 0.0027 36.7 8.7 146 179-346 424-579 (888)
86 PF06327 DUF1053: Domain of Un 38.9 13 0.00029 32.5 0.7 14 534-547 2-15 (101)
87 KOG4328 WD40 protein [Function 38.4 1.1E+02 0.0023 35.2 7.6 145 150-301 175-351 (498)
88 smart00320 WD40 WD40 repeats. 37.9 63 0.0014 19.4 3.6 28 272-301 13-40 (40)
89 KOG1240 Protein kinase contain 37.2 2.9E+02 0.0062 35.5 11.3 278 144-445 1030-1352(1431)
90 KOG1273 WD40 repeat protein [G 36.5 91 0.002 34.7 6.5 66 175-244 161-227 (405)
91 KOG0264 Nucleosome remodeling 36.4 3.1E+02 0.0067 31.3 10.6 126 161-310 272-411 (422)
92 KOG1897 Damage-specific DNA bi 35.8 2.7E+02 0.0059 34.9 10.8 112 128-243 479-613 (1096)
93 KOG2727 Rab3 GTPase-activating 35.7 31 0.00067 42.4 3.2 70 147-217 44-137 (1244)
94 KOG0265 U5 snRNP-specific prot 35.0 5.5E+02 0.012 28.6 11.9 61 179-244 103-164 (338)
95 KOG2321 WD40 repeat protein [G 34.9 97 0.0021 36.6 6.7 136 153-316 166-315 (703)
96 PF14655 RAB3GAP2_N: Rab3 GTPa 34.7 1.4E+02 0.0031 33.4 7.8 118 267-385 52-195 (415)
97 TIGR03147 cyt_nit_nrfF cytochr 34.4 17 0.00037 34.7 0.7 20 507-526 101-120 (126)
98 PF07569 Hira: TUP1-like enhan 34.3 1.5E+02 0.0033 29.8 7.3 85 403-504 13-101 (219)
99 KOG1409 Uncharacterized conser 33.6 1.6E+02 0.0034 33.1 7.8 103 181-304 167-271 (404)
100 KOG0643 Translation initiation 33.0 84 0.0018 34.2 5.5 52 188-244 119-178 (327)
101 KOG0278 Serine/threonine kinas 32.9 1.5E+02 0.0032 32.3 7.2 86 146-244 208-295 (334)
102 KOG2055 WD40 repeat protein [G 32.5 8.7E+02 0.019 28.4 14.0 205 206-444 210-430 (514)
103 KOG1446 Histone H3 (Lys4) meth 31.3 1.6E+02 0.0034 32.3 7.2 60 180-242 200-261 (311)
104 KOG0771 Prolactin regulatory e 31.1 3E+02 0.0065 31.1 9.5 25 474-498 287-311 (398)
105 KOG0642 Cell-cycle nuclear pro 30.8 2.7E+02 0.0058 32.8 9.3 126 159-303 289-426 (577)
106 KOG0643 Translation initiation 30.7 87 0.0019 34.1 5.2 72 166-241 139-218 (327)
107 PF00780 CNH: CNH domain; Int 30.5 5.3E+02 0.011 25.3 17.3 123 315-447 38-177 (275)
108 KOG0319 WD40-repeat-containing 29.4 1.1E+03 0.025 28.8 15.2 186 217-432 67-271 (775)
109 PF07569 Hira: TUP1-like enhan 29.2 1.2E+02 0.0026 30.5 5.7 33 315-347 12-48 (219)
110 KOG0286 G-protein beta subunit 29.0 6.3E+02 0.014 28.1 11.1 124 161-310 186-311 (343)
111 KOG1034 Transcriptional repres 28.7 2.1E+02 0.0046 32.0 7.7 107 179-303 105-211 (385)
112 PF14727 PHTB1_N: PTHB1 N-term 28.5 5.6E+02 0.012 28.8 11.1 88 140-241 225-316 (418)
113 COG3919 Predicted ATP-grasp en 28.3 36 0.00079 37.5 2.0 34 408-457 69-102 (415)
114 PF13131 DUF3951: Protein of u 28.1 46 0.00099 28.0 2.1 30 514-543 10-41 (53)
115 KOG0273 Beta-transducin family 27.8 3.9E+02 0.0084 31.1 9.7 188 161-382 235-448 (524)
116 PF08450 SGL: SMP-30/Gluconola 27.4 2.3E+02 0.0049 27.6 7.1 83 130-214 130-229 (246)
117 KOG1587 Cytoplasmic dynein int 27.3 2.9E+02 0.0063 32.2 8.9 106 182-308 363-477 (555)
118 KOG1963 WD40 repeat protein [G 27.3 86 0.0019 37.9 4.9 71 163-243 207-281 (792)
119 KOG0646 WD40 repeat protein [G 27.2 5.1E+02 0.011 30.0 10.5 108 186-303 197-307 (476)
120 PF10046 BLOC1_2: Biogenesis o 27.1 61 0.0013 29.0 2.9 29 55-83 69-97 (99)
121 KOG0293 WD40 repeat-containing 26.7 95 0.0021 35.5 4.8 58 178-239 451-509 (519)
122 PF03785 Peptidase_C25_C: Pept 26.1 1.7E+02 0.0036 26.6 5.3 34 282-316 14-47 (81)
123 TIGR03075 PQQ_enz_alc_DH PQQ-d 25.8 97 0.0021 34.9 4.8 33 182-214 475-511 (527)
124 KOG2048 WD40 repeat protein [G 25.7 97 0.0021 36.8 4.9 59 181-243 217-275 (691)
125 KOG0289 mRNA splicing factor [ 25.5 1.6E+02 0.0035 33.9 6.3 60 180-244 360-420 (506)
126 COG1520 FOG: WD40-like repeat 24.9 3.5E+02 0.0076 28.3 8.4 49 148-208 92-141 (370)
127 KOG0294 WD40 repeat-containing 24.7 1.9E+02 0.0042 32.1 6.6 60 180-243 220-281 (362)
128 PF05567 Neisseria_PilC: Neiss 24.3 87 0.0019 33.5 3.9 60 172-232 214-277 (335)
129 COG4331 Predicted membrane pro 24.1 28 0.0006 34.7 0.2 25 507-531 103-127 (167)
130 KOG1272 WD40-repeat-containing 23.6 1.7E+02 0.0036 34.0 6.1 134 144-306 174-326 (545)
131 KOG0284 Polyadenylation factor 23.3 2.8E+02 0.0061 31.8 7.6 73 161-243 138-210 (464)
132 KOG2055 WD40 repeat protein [G 23.3 7.3E+02 0.016 29.0 10.8 113 187-302 364-511 (514)
133 PF05545 FixQ: Cbb3-type cytoc 23.2 48 0.001 26.1 1.3 26 510-535 12-37 (49)
134 PRK09458 pspB phage shock prot 22.8 1.5E+02 0.0031 26.6 4.3 30 55-84 38-67 (75)
135 TIGR01167 LPXTG_anchor LPXTG-m 22.1 90 0.0019 22.3 2.5 15 519-533 19-33 (34)
136 COG2706 3-carboxymuconate cycl 22.0 1.1E+03 0.025 26.3 18.6 220 176-430 50-322 (346)
137 TIGR03024 arch_pef_cterm PEF-C 21.9 49 0.0011 24.4 1.0 24 504-533 2-25 (26)
138 PF08845 SymE_toxin: Toxin Sym 21.7 32 0.0007 28.7 0.1 37 601-642 5-41 (57)
139 PF04841 Vps16_N: Vps16, N-ter 21.0 4.7E+02 0.01 28.6 8.7 85 144-242 19-108 (410)
140 PRK00295 hypothetical protein; 20.9 1.6E+02 0.0035 25.1 4.1 27 55-81 29-55 (68)
141 PRK02793 phi X174 lysis protei 20.3 1.6E+02 0.0035 25.4 4.0 28 55-82 32-59 (72)
No 1
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.03 E-value=0.0079 Score=52.94 Aligned_cols=229 Identities=19% Similarity=0.223 Sum_probs=127.3
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILI 239 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~ 239 (655)
..+++|+.+-|. .+++++|...|.|+++..+ +..+..+ ..-..+|+.+.. . .+...+++|..||.|.+
T Consensus 9 ~~~i~~~~~~~~------~~~l~~~~~~g~i~i~~~~~~~~~~~~-~~~~~~i~~~~~-~---~~~~~l~~~~~~~~i~i 77 (289)
T cd00200 9 TGGVTCVAFSPD------GKLLATGSGDGTIKVWDLETGELLRTL-KGHTGPVRDVAA-S---ADGTYLASGSSDKTIRL 77 (289)
T ss_pred CCCEEEEEEcCC------CCEEEEeecCcEEEEEEeeCCCcEEEE-ecCCcceeEEEE-C---CCCCEEEEEcCCCeEEE
Confidence 467888888775 4789999999999999776 5444443 344567766432 2 45578999999999988
Q ss_pred EEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC-CeEEEEEeccCC---
Q 035748 240 HKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN-GMVHGTAAMLSS--- 315 (655)
Q Consensus 240 hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren-Gtl~G~aa~~~S--- 315 (655)
..+... +....+. ....+|+.+..+.- .++++++..+|.|.+|.-+ +...... ....
T Consensus 78 ~~~~~~-----------~~~~~~~-----~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~i 138 (289)
T cd00200 78 WDLETG-----------ECVRTLT-----GHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTL-RGHTDWV 138 (289)
T ss_pred EEcCcc-----------cceEEEe-----ccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEe-ccCCCcE
Confidence 776542 1122231 22236777666654 4577777789999999975 6655555 3222
Q ss_pred CceEEEee-eeeeeee-cCcc-ccccccCcccccccCCCCcccceeeeccccccceeeeeccCCcEEEEEEecCccccce
Q 035748 316 KPLVFLKQ-RLLFLTE-CGAG-SLDLRTMKLRETECEGLNNSLVRNYVFDATERSKAYGYTSEGDLIHVLLLGDVTNFKC 392 (655)
Q Consensus 316 rplaFlkQ-rllfLTe-~Gaa-slDLrtm~vr~~pCeGLN~S~i~syaFD~~~rsKaYG~T~~G~Li~v~l~gD~~~~~C 392 (655)
.-+.|-+. .+++.+. .|.. ..|+++.+....-. .....+....|++..+.-+++-. +|. |.++=. ...++
T Consensus 139 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-~~~-i~i~d~---~~~~~ 211 (289)
T cd00200 139 NSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT--GHTGEVNSVAFSPDGEKLLSSSS-DGT-IKLWDL---STGKC 211 (289)
T ss_pred EEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEe--cCccccceEEECCCcCEEEEecC-CCc-EEEEEC---CCCce
Confidence 23444442 4444433 3322 33666433221111 22235666777665543333333 443 233311 11111
Q ss_pred EEeeeccc-cCC-cccceeeec-eeEEEEe--cceEEEEEeec
Q 035748 393 RVRSKRKF-DMS-EPLAFQAIK-GYLLVVC--EEKIFVYNVSA 430 (655)
Q Consensus 393 rVRs~~k~-d~~-~pvalqaIK-GYlLvas--~~~V~VyNvTs 430 (655)
. ..+ ..+ +...++-.. |+++++. ...|.+||+..
T Consensus 212 ~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 212 L----GTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT 250 (289)
T ss_pred e----cchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC
Confidence 1 111 112 233333332 6666665 67899999875
No 2
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.52 E-value=0.043 Score=48.38 Aligned_cols=171 Identities=16% Similarity=0.157 Sum_probs=102.6
Q ss_pred CccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEE
Q 035748 162 SDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIH 240 (655)
Q Consensus 162 a~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~h 240 (655)
..++++...|.. +++++|...|.|++++.+ +..+.++. ....+|+.+.- . .+..++++|..||.|.+.
T Consensus 52 ~~i~~~~~~~~~------~~l~~~~~~~~i~i~~~~~~~~~~~~~-~~~~~i~~~~~-~---~~~~~~~~~~~~~~i~~~ 120 (289)
T cd00200 52 GPVRDVAASADG------TYLASGSSDKTIRLWDLETGECVRTLT-GHTSYVSSVAF-S---PDGRILSSSSRDKTIKVW 120 (289)
T ss_pred cceeEEEECCCC------CEEEEEcCCCeEEEEEcCcccceEEEe-ccCCcEEEEEE-c---CCCCEEEEecCCCeEEEE
Confidence 344566666653 789999999999999877 45555555 33567887443 2 356789999999999987
Q ss_pred EEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC-CeEEEEEeccCC---C
Q 035748 241 KVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN-GMVHGTAAMLSS---K 316 (655)
Q Consensus 241 rV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren-Gtl~G~aa~~~S---r 316 (655)
.+.. + .....+. ....+|+.+.++.- .++++++..+|.|.+|.-+ +...... .... .
T Consensus 121 ~~~~---~--------~~~~~~~-----~~~~~i~~~~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~i~ 181 (289)
T cd00200 121 DVET---G--------KCLTTLR-----GHTDWVNSVAFSPD--GTFVASSSQDGTIKLWDLRTGKCVATL-TGHTGEVN 181 (289)
T ss_pred ECCC---c--------EEEEEec-----cCCCcEEEEEEcCc--CCEEEEEcCCCcEEEEEccccccceeE-ecCccccc
Confidence 7652 0 1111221 22346888777665 5688888889999999875 5554444 2222 3
Q ss_pred ceEEEee--eeeeeeecCccc-cccccCcccccccCCCCcccceeeecccc
Q 035748 317 PLVFLKQ--RLLFLTECGAGS-LDLRTMKLRETECEGLNNSLVRNYVFDAT 364 (655)
Q Consensus 317 plaFlkQ--rllfLTe~Gaas-lDLrtm~vr~~pCeGLN~S~i~syaFD~~ 364 (655)
-+.|.+. .++.-+..|--. .|+++.+.... .++. ...+....|++.
T Consensus 182 ~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~-~~~~-~~~i~~~~~~~~ 230 (289)
T cd00200 182 SVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT-LRGH-ENGVNSVAFSPD 230 (289)
T ss_pred eEEECCCcCEEEEecCCCcEEEEECCCCceecc-hhhc-CCceEEEEEcCC
Confidence 4455554 344433333222 26654332211 1111 225677777776
No 3
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.60 E-value=0.03 Score=56.34 Aligned_cols=139 Identities=22% Similarity=0.313 Sum_probs=90.0
Q ss_pred eeeeeeec--CCccceeeeccCCCCC-CcceeEEeecc---------c-ceEEEEccCC------ceEEEEecCCCCCee
Q 035748 153 QFVSAVKL--ESDPTCINILPFRDYE-GHSKYVAVGDD---------K-GRVFVFLRNG------DVSVEFYTMSELPVT 213 (655)
Q Consensus 153 ~fvSAvkl--da~aTal~vLP~r~~~-glskY~AVGD~---------~-Grv~Vfs~~G------Dvl~E~~T~~~spVT 213 (655)
+.++-.++ +-.++|+..+.+.+.+ +...|++||.. . |||++|.-.- .+-..+.+....||+
T Consensus 13 ~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ 92 (321)
T PF03178_consen 13 EVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVT 92 (321)
T ss_dssp SEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EE
T ss_pred eEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcce
Confidence 34455555 5568888999988765 57899999987 3 9999996664 566666777799999
Q ss_pred EEEEeeeeecceeEEEeeecCceEEEEEEEecCCCCCcc------------hhh-----------hhhcc---------c
Q 035748 214 AMVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWS------------SLV-----------IENVG---------K 261 (655)
Q Consensus 214 Am~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~------------sLs-----------~e~~r---------~ 261 (655)
+|..| |..+|++- ++.|.++++-+.. -+. +|. +.++. +
T Consensus 93 ai~~~-----~~~lv~~~--g~~l~v~~l~~~~---~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~ 162 (321)
T PF03178_consen 93 AICSF-----NGRLVVAV--GNKLYVYDLDNSK---TLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNK 162 (321)
T ss_dssp EEEEE-----TTEEEEEE--TTEEEEEEEETTS---SEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-
T ss_pred Ehhhh-----CCEEEEee--cCEEEEEEccCcc---cchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCE
Confidence 98886 55555543 4788888887622 121 110 01111 1
Q ss_pred cccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC
Q 035748 262 YVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN 303 (655)
Q Consensus 262 ~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren 303 (655)
+...-++-....|++.++.-=+ ..++++|.+|.|.+|+.|
T Consensus 163 l~~va~d~~~~~v~~~~~l~d~--~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 163 LILVARDYQPRWVTAAEFLVDE--DTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEEEESS-BEEEEEEEE-SS--SEEEEEETTSEEEEEEE-
T ss_pred EEEEEecCCCccEEEEEEecCC--cEEEEEcCCCeEEEEEEC
Confidence 1111134456678888887444 399999999999999987
No 4
>PTZ00421 coronin; Provisional
Probab=95.67 E-value=2.6 Score=46.77 Aligned_cols=122 Identities=15% Similarity=0.154 Sum_probs=79.9
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-Cc-------eEEEEecCCCCCeeEEEEeeeeecceeEEEeee
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GD-------VSVEFYTMSELPVTAMVSYVSVYKNESVLVTGH 232 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GD-------vl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGH 232 (655)
...|+++..-|+.+ .++|.|.+.|.|.++.-. +. .+..+ .+-..+|+.+ ++- + -++.+|+||.
T Consensus 75 ~~~V~~v~fsP~d~-----~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L-~gH~~~V~~l-~f~-P-~~~~iLaSgs 145 (493)
T PTZ00421 75 EGPIIDVAFNPFDP-----QKLFTASEDGTIMGWGIPEEGLTQNISDPIVHL-QGHTKKVGIV-SFH-P-SAMNVLASAG 145 (493)
T ss_pred CCCEEEEEEcCCCC-----CEEEEEeCCCEEEEEecCCCccccccCcceEEe-cCCCCcEEEE-EeC-c-CCCCEEEEEe
Confidence 46789999888732 489999999999999654 32 23333 3346778873 432 3 2356999999
Q ss_pred cCceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC-CeEEEE
Q 035748 233 ENGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN-GMVHGT 309 (655)
Q Consensus 233 adG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren-Gtl~G~ 309 (655)
.||.|.+..+.. +.- ...+. .-..+|..+..+.- ..+++++..+|+|+||... |..-..
T Consensus 146 ~DgtVrIWDl~t---g~~--------~~~l~-----~h~~~V~sla~spd--G~lLatgs~Dg~IrIwD~rsg~~v~t 205 (493)
T PTZ00421 146 ADMVVNVWDVER---GKA--------VEVIK-----CHSDQITSLEWNLD--GSLLCTTSKDKKLNIIDPRDGTIVSS 205 (493)
T ss_pred CCCEEEEEECCC---CeE--------EEEEc-----CCCCceEEEEEECC--CCEEEEecCCCEEEEEECCCCcEEEE
Confidence 999997655432 111 11221 12235777777653 4689999999999999973 554333
No 5
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.05 E-value=6.4 Score=38.38 Aligned_cols=232 Identities=16% Similarity=0.184 Sum_probs=116.8
Q ss_pred eeEEeecccceEEEEcc-CCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEe-cCCCCCcchhhhh
Q 035748 180 KYVAVGDDKGRVFVFLR-NGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYE-KPNGEDWSSLVIE 257 (655)
Q Consensus 180 kY~AVGD~~Grv~Vfs~-~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~E-s~~gdD~~sLs~e 257 (655)
..++||.+.| ||+... ++.-..+... ..+|+-|.. + ..-|-=+++ +||.+.+|.+-. .+...... ....
T Consensus 8 ~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~v-l-~~~~~llvL---sd~~l~~~~L~~l~~~~~~~~-~~~~ 78 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSV-L-PELNLLLVL---SDGQLYVYDLDSLEPVSTSAP-LAFP 78 (275)
T ss_pred CEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEE-e-cccCEEEEE---cCCccEEEEchhhcccccccc-cccc
Confidence 5688999988 898876 3333333322 234777555 2 222444444 459999999876 22111110 0000
Q ss_pred hccccccccCCCCCCceEEEE-EeecCceeEEEEeeCCCcEEEEeeCC------eEEEEEecc-CCCceEEEeeeeeeee
Q 035748 258 NVGKYVATENGEEGLSVTLLE-VHHIGRMRYILSADASGKIRVFKENG------MVHGTAAML-SSKPLVFLKQRLLFLT 329 (655)
Q Consensus 258 ~~r~~~~~e~~~d~~pVt~LE-~hrvGr~RYVlsaDasGrV~VFrenG------tl~G~aa~~-~SrplaFlkQrllfLT 329 (655)
..... ...-.+...|...- .......++++++-.. +|.||.-+. ..+--+..+ ..+-+.|++..+.+=+
T Consensus 79 ~~~~~--~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk-~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~ 155 (275)
T PF00780_consen 79 KSRSL--PTKLPETKGVSFFAVNGGHEGSRRLCVAVKK-KILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGT 155 (275)
T ss_pred ccccc--cccccccCCeeEEeeccccccceEEEEEECC-EEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEe
Confidence 00000 00111222222221 2233444555555544 888888754 233333122 1235667778888888
Q ss_pred ecCccccccccCcccccccCCCCcccceeeeccccccceeeeecc--CCcEEEEEEecCccccceEEee------ecccc
Q 035748 330 ECGAGSLDLRTMKLRETECEGLNNSLVRNYVFDATERSKAYGYTS--EGDLIHVLLLGDVTNFKCRVRS------KRKFD 401 (655)
Q Consensus 330 e~GaaslDLrtm~vr~~pCeGLN~S~i~syaFD~~~rsKaYG~T~--~G~Li~v~l~gD~~~~~CrVRs------~~k~d 401 (655)
+.+--.+|+.+..+.+.+ .+..+. .-..-..+..+-.++.. +++.+- .-| ++.|-|-. +..++
T Consensus 156 ~~~f~~idl~~~~~~~l~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~e~Ll---~~~--~~g~fv~~~G~~~r~~~i~ 226 (275)
T PF00780_consen 156 SKGFYLIDLNTGSPSELL--DPSDSS--SSFKSRNSSSKPLGIFQLSDNEFLL---CYD--NIGVFVNKNGEPSRKSTIQ 226 (275)
T ss_pred CCceEEEecCCCCceEEe--CccCCc--chhhhcccCCCceEEEEeCCceEEE---Eec--ceEEEEcCCCCcCcccEEE
Confidence 999999999976655443 111111 00000011111111111 122211 111 22222222 11222
Q ss_pred C-CcccceeeeceeEEEEecceEEEEEeecee
Q 035748 402 M-SEPLAFQAIKGYLLVVCEEKIFVYNVSAQH 432 (655)
Q Consensus 402 ~-~~pvalqaIKGYlLvas~~~V~VyNvTsq~ 432 (655)
- +.|.++.-.+.||++.++..|.|+|+.++.
T Consensus 227 W~~~p~~~~~~~pyli~~~~~~iEV~~~~~~~ 258 (275)
T PF00780_consen 227 WSSAPQSVAYSSPYLIAFSSNSIEVRSLETGE 258 (275)
T ss_pred cCCchhEEEEECCEEEEECCCEEEEEECcCCc
Confidence 2 569999999999999999999999999963
No 6
>PLN00181 protein SPA1-RELATED; Provisional
Probab=93.70 E-value=17 Score=41.95 Aligned_cols=110 Identities=21% Similarity=0.228 Sum_probs=61.0
Q ss_pred CCcceeEEeecccceEEEEccCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEecC----CCCCc
Q 035748 176 EGHSKYVAVGDDKGRVFVFLRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKP----NGEDW 251 (655)
Q Consensus 176 ~glskY~AVGD~~Grv~Vfs~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~----~gdD~ 251 (655)
+|+.|+. .+..-++-.....|+++. ...+|++ +++. .+..+|+||..||.|. ||+-. .+.+.
T Consensus 457 ~gl~~~~--~~~~~~~~~~~~~~~~~~-----~~~~V~~-i~fs---~dg~~latgg~D~~I~---iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYL--SFSKLRVKADLKQGDLLN-----SSNLVCA-IGFD---RDGEFFATAGVNKKIK---IFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhh--cccceEEEEeeccccccC-----CCCcEEE-EEEC---CCCCEEEEEeCCCEEE---EEECCccccccccc
Confidence 4555552 222333333334455422 3667888 4543 5889999999999985 55411 12222
Q ss_pred chhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC-CeEEEEE
Q 035748 252 SSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN-GMVHGTA 310 (655)
Q Consensus 252 ~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren-Gtl~G~a 310 (655)
+.... .+ ....+|..+-.+ .-...++++++.+|.|+||.-. +..-...
T Consensus 523 ~~~~~----~~------~~~~~v~~l~~~-~~~~~~las~~~Dg~v~lWd~~~~~~~~~~ 571 (793)
T PLN00181 523 HYPVV----EL------ASRSKLSGICWN-SYIKSQVASSNFEGVVQVWDVARSQLVTEM 571 (793)
T ss_pred ccceE----Ee------cccCceeeEEec-cCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 11000 01 012345555333 3335689999999999999864 5554444
No 7
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=93.49 E-value=13 Score=41.08 Aligned_cols=287 Identities=17% Similarity=0.228 Sum_probs=166.3
Q ss_pred eeeeeCccccccceeeeeeecCCccceeeeccCCCCCCcceeEEeecccceEEEEccCC------ceEEEEecCCCCCee
Q 035748 140 SVTKYSPFWSERFQFVSAVKLESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRNG------DVSVEFYTMSELPVT 213 (655)
Q Consensus 140 ~VtKr~p~WSerF~fvSAvklda~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~G------Dvl~E~~T~~~spVT 213 (655)
+++|-+++||-...- .=.-+.-|+.+-+.-....-...+.||.-.|.|-|+.|.+ |+++|.++. .||=
T Consensus 2 SLFk~rewWst~~~~----~e~~d~~~l~v~~~~~~~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~--~PIL 75 (418)
T PF14727_consen 2 SLFKTREWWSTKCGE----NEEFDQGSLCVGNLDNSPSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLK--DPIL 75 (418)
T ss_pred CcccchheeeccCCC----CCcCcCceEEEEcccCCCCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecC--CcEE
Confidence 678999999976421 1112456888888887666689999999999999998873 688888765 7887
Q ss_pred EEEEeeeeeccee-EEEeeecCceEEEEEEEe-cC---CCCCcchhhhhhccccccccCCCCCCceEEEEEeecCc---e
Q 035748 214 AMVSYVSVYKNES-VLVTGHENGVILIHKVYE-KP---NGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGR---M 285 (655)
Q Consensus 214 Am~SYlsvrRNeT-~lVTGHadG~V~~hrV~E-s~---~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr---~ 285 (655)
-|-+=-.+...+. .|+. ----.+.+.+|.. .. +|+++ .|.+..-+.| .+..-+.- .=.+|+ .
T Consensus 76 qv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~~~-~L~~~yeh~l---~~~a~nm~-----~G~Fgg~~~~ 145 (418)
T PF14727_consen 76 QVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGNQY-QLELIYEHSL---QRTAYNMC-----CGPFGGVKGR 145 (418)
T ss_pred EEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCcEE-EEEEEEEEec---ccceeEEE-----EEECCCCCCc
Confidence 7655321222222 2222 3344566667754 22 33332 2222222333 11111110 112444 3
Q ss_pred eEEEEeeCCCcEEEEeeCCeEEEEEeccC---CCceEEEeeeeeeeeecCccccccccCcccccccCCCCcccceeeecc
Q 035748 286 RYILSADASGKIRVFKENGMVHGTAAMLS---SKPLVFLKQRLLFLTECGAGSLDLRTMKLRETECEGLNNSLVRNYVFD 362 (655)
Q Consensus 286 RYVlsaDasGrV~VFrenGtl~G~aa~~~---SrplaFlkQrllfLTe~GaaslDLrtm~vr~~pCeGLN~S~i~syaFD 362 (655)
-+|.+=--+|++.+|.-++-++... .+. -.||.|..+.=.|+|.+-. |++..+-+.-|-...-..-.
T Consensus 146 ~~IcVQS~DG~L~~feqe~~~f~~~-lp~~llPgPl~Y~~~tDsfvt~sss-------~~l~~Yky~~La~~s~~~~~-- 215 (418)
T PF14727_consen 146 DFICVQSMDGSLSFFEQESFAFSRF-LPDFLLPGPLCYCPRTDSFVTASSS-------WTLECYKYQDLASASEASSR-- 215 (418)
T ss_pred eEEEEEecCceEEEEeCCcEEEEEE-cCCCCCCcCeEEeecCCEEEEecCc-------eeEEEecHHHhhhccccccc--
Confidence 4889999999999999999999888 555 3499999988888886532 33333333222111110000
Q ss_pred ccccceeeeeccCCcEEEEEEecCccccceEEeeeccc------cC-Ccccceeeece-----eEEEEecceEEEEEeec
Q 035748 363 ATERSKAYGYTSEGDLIHVLLLGDVTNFKCRVRSKRKF------DM-SEPLAFQAIKG-----YLLVVCEEKIFVYNVSA 430 (655)
Q Consensus 363 ~~~rsKaYG~T~~G~Li~v~l~gD~~~~~CrVRs~~k~------d~-~~pvalqaIKG-----YlLvas~~~V~VyNvTs 430 (655)
++-+. -. ..+++++ .+ |+.+.|+.|+. +++|-.+..++++|-+-
T Consensus 216 -------~~~~~----~~-------------~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~~G 271 (418)
T PF14727_consen 216 -------QSGTE----QD-------------ISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGERSLFCLKDNG 271 (418)
T ss_pred -------ccccc----cc-------------ccccccccceeEEECCceeEEEEEEEcCCCCceEEEEecceEEEEcCCC
Confidence 00000 00 0022332 23 66777777776 99999999999999864
Q ss_pred eeeeccCCCccccccChHHHHHhhccccccccccccccccCCceEEecCCc-eEEEeeCCcEEEEEecC
Q 035748 431 QHYVRSGGPRLLFSAGLDEIRSSFLNYQVMDVDVNDEKRRSVPLIASDRDK-LLVLGLGGGYVGMYRSN 498 (655)
Q Consensus 431 q~y~Rv~~PR~Lfsa~L~~i~s~Fl~~~~~~~~~~~~~~a~~PLIASdRek-LVVlglgdGyVa~YrS~ 498 (655)
...|.--||-.-..|..+..... .....+ .++++=.+|.+=+|+-+
T Consensus 272 ---------~l~~~krLd~~p~~~~~Y~~~~~-------------~~~~~~~~llV~t~t~~LlVy~d~ 318 (418)
T PF14727_consen 272 ---------SLRFQKRLDYNPSCFCPYRVPWY-------------NEPSTRLNLLVGTHTGTLLVYEDT 318 (418)
T ss_pred ---------eEEEEEecCCceeeEEEEEeecc-------------cCCCCceEEEEEecCCeEEEEeCC
Confidence 55666666666556665554221 111111 25666666677777654
No 8
>PLN00181 protein SPA1-RELATED; Provisional
Probab=92.88 E-value=1.5 Score=50.02 Aligned_cols=107 Identities=11% Similarity=0.212 Sum_probs=66.7
Q ss_pred ceeEEeecccceEEEEcc-CCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEecCCCCCcchhhhh
Q 035748 179 SKYVAVGDDKGRVFVFLR-NGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWSSLVIE 257 (655)
Q Consensus 179 skY~AVGD~~Grv~Vfs~-~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e 257 (655)
..++|+|...|.|++++. ++........+-..+|+.+ .+ .+...|+||+.||.|.+..+.....+.++..
T Consensus 630 g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v-~f----~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~---- 700 (793)
T PLN00181 630 GRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYV-RF----VDSSTLVSSSTDNTLKLWDLSMSISGINETP---- 700 (793)
T ss_pred CCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEE-EE----eCCCEEEEEECCCEEEEEeCCCCccccCCcc----
Confidence 468999999999999965 4553222223445688874 33 2567899999999988777654333333221
Q ss_pred hccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee
Q 035748 258 NVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE 302 (655)
Q Consensus 258 ~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre 302 (655)
++.|.. -...+..+-+..- .+|++++..+|.|.||..
T Consensus 701 -l~~~~g-----h~~~i~~v~~s~~--~~~lasgs~D~~v~iw~~ 737 (793)
T PLN00181 701 -LHSFMG-----HTNVKNFVGLSVS--DGYIATGSETNEVFVYHK 737 (793)
T ss_pred -eEEEcC-----CCCCeeEEEEcCC--CCEEEEEeCCCEEEEEEC
Confidence 122311 1123333333322 359999999999999975
No 9
>PTZ00420 coronin; Provisional
Probab=92.35 E-value=25 Score=40.37 Aligned_cols=105 Identities=7% Similarity=0.117 Sum_probs=58.2
Q ss_pred ecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEecCCCCC-cchhhhhhcccc
Q 035748 185 GDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGED-WSSLVIENVGKY 262 (655)
Q Consensus 185 GD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD-~~sLs~e~~r~~ 262 (655)
|-..|.|.+.... ...+..+ .+-..+|+++ ++ +. -+..+|+||.+||.|.+..+.. +.. ...+. +-+..+
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L-~gH~~~V~~l-af-sP-~~~~lLASgS~DgtIrIWDi~t---~~~~~~~i~-~p~~~L 121 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKL-KGHTSSILDL-QF-NP-CFSEILASGSEDLTIRVWEIPH---NDESVKEIK-DPQCIL 121 (568)
T ss_pred CCceeEEEeeecCCCceEEEE-cCCCCCEEEE-EE-cC-CCCCEEEEEeCCCeEEEEECCC---CCccccccc-cceEEe
Confidence 4445555555432 2222222 3446789984 54 34 2567999999999996554432 211 11110 001112
Q ss_pred ccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC
Q 035748 263 VATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN 303 (655)
Q Consensus 263 ~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren 303 (655)
.+-...|+.+..|.-+. .+++++..+|.|+||.-.
T Consensus 122 -----~gH~~~V~sVaf~P~g~-~iLaSgS~DgtIrIWDl~ 156 (568)
T PTZ00420 122 -----KGHKKKISIIDWNPMNY-YIMCSSGFDSFVNIWDIE 156 (568)
T ss_pred -----ecCCCcEEEEEECCCCC-eEEEEEeCCCeEEEEECC
Confidence 12235788888876542 244577889999999863
No 10
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=91.69 E-value=0.54 Score=53.33 Aligned_cols=75 Identities=24% Similarity=0.360 Sum_probs=60.9
Q ss_pred cCCccceeeeccCCCCCCcceeEEeecccceEEEEccCCceEEEEe--cCCCCCeeEEEEeeeeecceeEEEeeecCceE
Q 035748 160 LESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRNGDVSVEFY--TMSELPVTAMVSYVSVYKNESVLVTGHENGVI 237 (655)
Q Consensus 160 lda~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~GDvl~E~~--T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V 237 (655)
++=.++|+++-|- ..|+|||=..|.|||++-+||.++|.. ...-+|||. ++| |. +.+.|++|-+++.|
T Consensus 442 ~~y~~s~vAv~~~------~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~-vay-Sp--d~~yla~~Da~rkv 511 (603)
T KOG0318|consen 442 IGYESSAVAVSPD------GSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITD-VAY-SP--DGAYLAAGDASRKV 511 (603)
T ss_pred cccccceEEEcCC------CCEEEEecccceEEEEEecCCcccceeeeecccCCceE-EEE-CC--CCcEEEEeccCCcE
Confidence 3444555555543 468999999999999999999988875 566789998 888 34 89999999999999
Q ss_pred EEEEEEe
Q 035748 238 LIHKVYE 244 (655)
Q Consensus 238 ~~hrV~E 244 (655)
+...+..
T Consensus 512 v~yd~~s 518 (603)
T KOG0318|consen 512 VLYDVAS 518 (603)
T ss_pred EEEEccc
Confidence 9998876
No 11
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=91.66 E-value=8.8 Score=42.41 Aligned_cols=252 Identities=20% Similarity=0.301 Sum_probs=155.9
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEcc-CCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLR-NGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILI 239 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~-~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~ 239 (655)
-++|-|+..=| -...+|.|=..-+-|++.- +|+.++|...- .-.||. +++ .-..++|+||--+|-|.+
T Consensus 64 ~~svFavsl~P------~~~l~aTGGgDD~AflW~~~~ge~~~eltgH-KDSVt~-~~F---shdgtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 64 TDSVFAVSLHP------NNNLVATGGGDDLAFLWDISTGEFAGELTGH-KDSVTC-CSF---SHDGTLLATGDMSGKVLV 132 (399)
T ss_pred CCceEEEEeCC------CCceEEecCCCceEEEEEccCCcceeEecCC-CCceEE-EEE---ccCceEEEecCCCccEEE
Confidence 35666666666 2467899888888889854 49988887655 444665 232 248999999999999988
Q ss_pred EEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeCC-eE----E-------
Q 035748 240 HKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKENG-MV----H------- 307 (655)
Q Consensus 240 hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFrenG-tl----~------- 307 (655)
|++-. -++-|.- ..+..-++-|.-|. |.+.+++.+.+|.|=+|+-+- .+ +
T Consensus 133 ~~~st--g~~~~~~--------------~~e~~dieWl~WHp--~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct 194 (399)
T KOG0296|consen 133 FKVST--GGEQWKL--------------DQEVEDIEWLKWHP--RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCT 194 (399)
T ss_pred EEccc--CceEEEe--------------ecccCceEEEEecc--cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcc
Confidence 77654 1122221 14555677888887 888999999999999999853 22 2
Q ss_pred -EEEeccCCCceEEEe---eeeeeeeecCccccccccCcccccccCCCCcccceeeeccccccceeeeecc-CCcEEEEE
Q 035748 308 -GTAAMLSSKPLVFLK---QRLLFLTECGAGSLDLRTMKLRETECEGLNNSLVRNYVFDATERSKAYGYTS-EGDLIHVL 382 (655)
Q Consensus 308 -G~aa~~~SrplaFlk---QrllfLTe~GaaslDLrtm~vr~~pCeGLN~S~i~syaFD~~~rsKaYG~T~-~G~Li~v~ 382 (655)
|-+ +|.-+.++-.- .-++|.-.+|.-.-++..-.-++.||-++| .+-..+|+-..=+-+|+++. -|.++.++
T Consensus 195 ~G~f-~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~--~~~~~~~~g~~e~~~~~~~~~sgKVv~~~ 271 (399)
T KOG0296|consen 195 CGEF-IPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLN--LAGSTLTKGNSEGVACGVNNGSGKVVNCN 271 (399)
T ss_pred cccc-cCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccc--cccceeEeccCCccEEEEccccceEEEec
Confidence 333 33322222121 247788888888888888888999998854 22334455556677788864 46666643
Q ss_pred EecCccccceEE----eeeccccCCcccceeeeceeEEEEecceEEEEEeeceeeeccCCCccccccChHHHHHhhcc
Q 035748 383 LLGDVTNFKCRV----RSKRKFDMSEPLAFQAIKGYLLVVCEEKIFVYNVSAQHYVRSGGPRLLFSAGLDEIRSSFLN 456 (655)
Q Consensus 383 l~gD~~~~~CrV----Rs~~k~d~~~pvalqaIKGYlLvas~~~V~VyNvTsq~y~Rv~~PR~Lfsa~L~~i~s~Fl~ 456 (655)
-. -....+=-- -+..-.-....+.|.|+- | + -.+|.+|....+ .+|-.+--.-..++-.|++
T Consensus 272 n~-~~~~l~~~~e~~~esve~~~~ss~lpL~A~G-~--v--dG~i~iyD~a~~------~~R~~c~he~~V~~l~w~~ 337 (399)
T KOG0296|consen 272 NG-TVPELKPSQEELDESVESIPSSSKLPLAACG-S--V--DGTIAIYDLAAS------TLRHICEHEDGVTKLKWLN 337 (399)
T ss_pred CC-CCccccccchhhhhhhhhcccccccchhhcc-c--c--cceEEEEecccc------hhheeccCCCceEEEEEcC
Confidence 32 111110000 000000012233344432 1 1 478999998887 5566666666677777777
No 12
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.53 E-value=10 Score=41.10 Aligned_cols=119 Identities=19% Similarity=0.242 Sum_probs=81.4
Q ss_pred eeEEeecccceEEEEcc-CC-ceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEecCCCCCcchhhhh
Q 035748 180 KYVAVGDDKGRVFVFLR-NG-DVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWSSLVIE 257 (655)
Q Consensus 180 kY~AVGD~~Grv~Vfs~-~G-Dvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e 257 (655)
+|++-|...+.|.+++. ++ ..+-.+. +-..+|++ +++- . +. .+|++|..||+|.+=.+. . .+
T Consensus 216 ~~l~s~s~D~tiriwd~~~~~~~~~~l~-gH~~~v~~-~~f~-p-~g-~~i~Sgs~D~tvriWd~~---~--------~~ 279 (456)
T KOG0266|consen 216 SYLLSGSDDKTLRIWDLKDDGRNLKTLK-GHSTYVTS-VAFS-P-DG-NLLVSGSDDGTVRIWDVR---T--------GE 279 (456)
T ss_pred cEEEEecCCceEEEeeccCCCeEEEEec-CCCCceEE-EEec-C-CC-CEEEEecCCCcEEEEecc---C--------Ce
Confidence 49999999999999987 54 4444444 66889988 5653 4 34 899999999999653332 1 23
Q ss_pred hccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC-Ce--EEEEEeccCCC--ceEEEe
Q 035748 258 NVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN-GM--VHGTAAMLSSK--PLVFLK 322 (655)
Q Consensus 258 ~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren-Gt--l~G~aa~~~Sr--plaFlk 322 (655)
..+++ . +...+|+. +..-+..+++++++.+|.|+||.-. |. +.... ...+. |+-+++
T Consensus 280 ~~~~l----~-~hs~~is~--~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~ 341 (456)
T KOG0266|consen 280 CVRKL----K-GHSDGISG--LAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLL-SGAENSAPVTSVQ 341 (456)
T ss_pred EEEee----e-ccCCceEE--EEECCCCCEEEEcCCCccEEEEECCCCceeeeecc-cCCCCCCceeEEE
Confidence 33444 1 22237777 5667778899999999999999985 44 34455 33323 577776
No 13
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.96 E-value=0.97 Score=52.62 Aligned_cols=230 Identities=18% Similarity=0.240 Sum_probs=138.5
Q ss_pred CCcceeEEeecccceEEEEccCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEecCCCCCcchhh
Q 035748 176 EGHSKYVAVGDDKGRVFVFLRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWSSLV 255 (655)
Q Consensus 176 ~glskY~AVGD~~Grv~Vfs~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs 255 (655)
+.-.+|.++|-+.|.||+|++.|..+.=.......-+|. ..+|.-+|-+++.|.|+|.|.+.-+-++.-++
T Consensus 42 dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~---~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~------ 112 (726)
T KOG3621|consen 42 DATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITC---VRSVSSVEYLVAAGTASGRVSVFQLNKELPRD------ 112 (726)
T ss_pred ecCCceEEEecccceEEEEecCchhhhcccccCccceEE---EEEecchhHhhhhhcCCceEEeehhhccCCCc------
Confidence 345799999999999999999977666655544333333 24566799999999999999988776621111
Q ss_pred hhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeCCeEEEEEeccCCCceEEEe---------e-e-
Q 035748 256 IENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKENGMVHGTAAMLSSKPLVFLK---------Q-R- 324 (655)
Q Consensus 256 ~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFrenGtl~G~aa~~~SrplaFlk---------Q-r- 324 (655)
..|+....--.+..||+|+-=--|.+ |-+.|..|+|..-+=|=. -.+ +..+-+|.-+- | +
T Consensus 113 ----~~~~t~~d~~~~~rVTal~Ws~~~~k--~ysGD~~Gkv~~~~L~s~--~~~-~~~~q~il~~ds~IVQlD~~q~~L 183 (726)
T KOG3621|consen 113 ----LDYVTPCDKSHKCRVTALEWSKNGMK--LYSGDSQGKVVLTELDSR--QAF-LSKSQEILSEDSEIVQLDYLQSYL 183 (726)
T ss_pred ----ceeeccccccCCceEEEEEecccccE--EeecCCCceEEEEEechh--hhh-ccccceeeccCcceEEeeccccee
Confidence 23333333335678999886655544 457999999987665542 222 23333333221 2 2
Q ss_pred --------eeeeeecCccccccccCccccc-----------ccCCCCcccceeeeccccccceeeeeccCCcEEEEEEec
Q 035748 325 --------LLFLTECGAGSLDLRTMKLRET-----------ECEGLNNSLVRNYVFDATERSKAYGYTSEGDLIHVLLLG 385 (655)
Q Consensus 325 --------llfLTe~GaaslDLrtm~vr~~-----------pCeGLN~S~i~syaFD~~~rsKaYG~T~~G~Li~v~l~g 385 (655)
+||=||++- .-..-=+.|.. +| +++..+|.. ++==+|.|=++-+|+++.-...=
T Consensus 184 LVStl~r~~Lc~tE~et--i~QIG~k~R~~~~~~GACF~~g~~-~~q~~~Iyc----aRPG~RlWead~~G~V~~Thqfk 256 (726)
T KOG3621|consen 184 LVSTLTRCILCQTEAET--ITQIGKKPRKSLIDFGACFFPGQC-KAQKPQIYC----ARPGLRLWEADFAGEVIKTHQFK 256 (726)
T ss_pred hHhhhhhhheeecchhH--HHHhcCCCcCCccccceEEeeccc-cCCCceEEE----ecCCCceEEeecceeEEEeeehh
Confidence 444455443 11222334444 56 666666654 45668999999999999877655
Q ss_pred Cccc----cceEEee--ecccc-------CCcccceeeecee-EEEEecceEEEEEeec
Q 035748 386 DVTN----FKCRVRS--KRKFD-------MSEPLAFQAIKGY-LLVVCEEKIFVYNVSA 430 (655)
Q Consensus 386 D~~~----~~CrVRs--~~k~d-------~~~pvalqaIKGY-lLvas~~~V~VyNvTs 430 (655)
|... .-=..|+ ..+.+ .-.-..++.|.+- +|+.|...|.||-..+
T Consensus 257 ~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~Giyv~d~~~ 315 (726)
T KOG3621|consen 257 DALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVGIYVFDSNN 315 (726)
T ss_pred hhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecceEEEEEecc
Confidence 5332 1122233 11111 1113344555555 7888887777776655
No 14
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.20 E-value=37 Score=36.95 Aligned_cols=145 Identities=17% Similarity=0.220 Sum_probs=95.7
Q ss_pred eCccccccceeeeeeecCCccceeeeccCCCCCCcceeEEeecccceEEEEccC-Cc--eEEEEecCCCCCeeEEEEeee
Q 035748 144 YSPFWSERFQFVSAVKLESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GD--VSVEFYTMSELPVTAMVSYVS 220 (655)
Q Consensus 144 r~p~WSerF~fvSAvklda~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GD--vl~E~~T~~~spVTAm~SYls 220 (655)
.++.|+- .+.-+-.....++|+.+=|- -+++|.++..+-+.++... +. ++.+. .+-...|+. +++.
T Consensus 144 ~~~~~~~--~~~~~~~~~~sv~~~~fs~~------g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~-~~fs- 212 (456)
T KOG0266|consen 144 SSRVFSL--EQTLAGHECPSVTCVDFSPD------GRALAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVSD-VAFS- 212 (456)
T ss_pred cccccee--eeeecccccCceEEEEEcCC------CCeEEEccCCCcEEEeecccccchhhccc-cccccceee-eEEC-
Confidence 5666666 33334444566777554442 3468899999988888663 55 44444 555667777 4543
Q ss_pred eecceeEEEeeecCceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEE
Q 035748 221 VYKNESVLVTGHENGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVF 300 (655)
Q Consensus 221 vrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VF 300 (655)
..-.+|++|..|++|.++++.+ +- .+++.+. +-...|+.+-++..| +.|+++..+|.|++|
T Consensus 213 --~d~~~l~s~s~D~tiriwd~~~-----~~-----~~~~~l~-----gH~~~v~~~~f~p~g--~~i~Sgs~D~tvriW 273 (456)
T KOG0266|consen 213 --PDGSYLLSGSDDKTLRIWDLKD-----DG-----RNLKTLK-----GHSTYVTSVAFSPDG--NLLVSGSDDGTVRIW 273 (456)
T ss_pred --CCCcEEEEecCCceEEEeeccC-----CC-----eEEEEec-----CCCCceEEEEecCCC--CEEEEecCCCcEEEE
Confidence 3555999999999999998822 21 1223331 233467888888888 899999999999999
Q ss_pred eeC-CeEEEEEeccCCCceE
Q 035748 301 KEN-GMVHGTAAMLSSKPLV 319 (655)
Q Consensus 301 ren-Gtl~G~aa~~~Srpla 319 (655)
.-. |+.-+.. ..-+.++-
T Consensus 274 d~~~~~~~~~l-~~hs~~is 292 (456)
T KOG0266|consen 274 DVRTGECVRKL-KGHSDGIS 292 (456)
T ss_pred eccCCeEEEee-eccCCceE
Confidence 985 6766666 44444444
No 15
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.88 E-value=1.8 Score=52.70 Aligned_cols=137 Identities=20% Similarity=0.273 Sum_probs=89.9
Q ss_pred eCccccccceeeeeeecCCccceeeeccCCCCCCc--------ceeEEeecccceEEEEccC-CceEEEEecCCCCCeeE
Q 035748 144 YSPFWSERFQFVSAVKLESDPTCINILPFRDYEGH--------SKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTA 214 (655)
Q Consensus 144 r~p~WSerF~fvSAvklda~aTal~vLP~r~~~gl--------skY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTA 214 (655)
|.+.| +.+++|+|-+==+ .-||-.++-|+ ..-+..|| --.|-|.+.. -.++.+..+++++-|||
T Consensus 1141 y~~~~-~~~eLVTaw~~Ls-----~~~~~~r~~~~v~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~t~vTa 1213 (1387)
T KOG1517|consen 1141 YADKW-KKPELVTAWSSLS-----DQLPGARGTGLVVDWQQQSGHLLVTGD-VRSIRIWDAHKEQVVADIPYGSSTLVTA 1213 (1387)
T ss_pred ccccc-CCceeEEeecccc-----ccCccCCCCCeeeehhhhCCeEEecCC-eeEEEEEecccceeEeecccCCCcccee
Confidence 44455 6777777765311 13444444441 23456666 3344455666 56677777999999999
Q ss_pred EEEeeeeecceeEEEeeecCceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCC
Q 035748 215 MVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADAS 294 (655)
Q Consensus 215 m~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDas 294 (655)
|.+++ + +-.++|+|.+||+|.+...+--+ .| ++.... |.+ -+-.+|.||.+-+.|-. -++++-.+
T Consensus 1214 LS~~~-~--~gn~i~AGfaDGsvRvyD~R~a~-~d---s~v~~~-R~h------~~~~~Iv~~slq~~G~~-elvSgs~~ 1278 (1387)
T KOG1517|consen 1214 LSADL-V--HGNIIAAGFADGSVRVYDRRMAP-PD---SLVCVY-REH------NDVEPIVHLSLQRQGLG-ELVSGSQD 1278 (1387)
T ss_pred ecccc-c--CCceEEEeecCCceEEeecccCC-cc---ccceee-ccc------CCcccceeEEeecCCCc-ceeeeccC
Confidence 99996 5 47899999999999998877521 11 232221 111 12223999999887765 88899999
Q ss_pred CcEEEEee
Q 035748 295 GKIRVFKE 302 (655)
Q Consensus 295 GrV~VFre 302 (655)
|.|.+|.-
T Consensus 1279 G~I~~~Dl 1286 (1387)
T KOG1517|consen 1279 GDIQLLDL 1286 (1387)
T ss_pred CeEEEEec
Confidence 99999874
No 16
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=87.99 E-value=19 Score=40.82 Aligned_cols=227 Identities=15% Similarity=0.237 Sum_probs=133.8
Q ss_pred eeecCCccceeeeccCCCCCCcceeEEeecccceEEEEc-cCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCc
Q 035748 157 AVKLESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFL-RNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENG 235 (655)
Q Consensus 157 Avklda~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs-~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG 235 (655)
=-.+-.+++||..-| ..-|++.|..+|.||+.. ..|.+|.-+..-. -+||-+..- -|.+.++||..||
T Consensus 77 ~~v~Pg~v~al~s~n------~G~~l~ag~i~g~lYlWelssG~LL~v~~aHY-Q~ITcL~fs----~dgs~iiTgskDg 145 (476)
T KOG0646|consen 77 YIVLPGPVHALASSN------LGYFLLAGTISGNLYLWELSSGILLNVLSAHY-QSITCLKFS----DDGSHIITGSKDG 145 (476)
T ss_pred hcccccceeeeecCC------CceEEEeecccCcEEEEEeccccHHHHHHhhc-cceeEEEEe----CCCcEEEecCCCc
Confidence 334566788876655 356889999999999995 4499877665443 467776553 5999999999999
Q ss_pred eEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCcee-EEEEeeCCCcEEEEeeC-CeEEEEEecc
Q 035748 236 VILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMR-YILSADASGKIRVFKEN-GMVHGTAAML 313 (655)
Q Consensus 236 ~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~R-YVlsaDasGrV~VFren-Gtl~G~aa~~ 313 (655)
+|++-.+.-..+.++-+ +.+-.+.| -+-..+||-|+.= .|..+ +|+.+-.+--++||.-. |.|.-++..|
T Consensus 146 ~V~vW~l~~lv~a~~~~--~~~p~~~f-----~~HtlsITDl~ig-~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp 217 (476)
T KOG0646|consen 146 AVLVWLLTDLVSADNDH--SVKPLHIF-----SDHTLSITDLQIG-SGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP 217 (476)
T ss_pred cEEEEEEEeecccccCC--Cccceeee-----ccCcceeEEEEec-CCCccceEEEecCCceEEEEEeccceeeEEEecC
Confidence 99999888733333322 22222344 1234688887654 44344 89999999999999985 7777777222
Q ss_pred CCCceEEE---e-eeeeeee-ecCccccccccCcccccccCCCCcccceeeeccccccceee-----------eeccCCc
Q 035748 314 SSKPLVFL---K-QRLLFLT-ECGAGSLDLRTMKLRETECEGLNNSLVRNYVFDATERSKAY-----------GYTSEGD 377 (655)
Q Consensus 314 ~SrplaFl---k-QrllfLT-e~GaaslDLrtm~vr~~pCeGLN~S~i~syaFD~~~rsKaY-----------G~T~~G~ 377 (655)
. ++..+ + -|++|.+ +-|--+ +.-|.-....-.|+| .+.+.++-++.--+. .++.||.
T Consensus 218 ~--si~av~lDpae~~~yiGt~~G~I~--~~~~~~~~~~~~~v~---~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt 290 (476)
T KOG0646|consen 218 S--SIKAVALDPAERVVYIGTEEGKIF--QNLLFKLSGQSAGVN---QKGRHEENTQINVLVGHENESAITCLAISTDGT 290 (476)
T ss_pred C--cceeEEEcccccEEEecCCcceEE--eeehhcCCccccccc---ccccccccceeeeeccccCCcceeEEEEecCcc
Confidence 2 22222 1 3555543 333322 222222221222222 333333333222222 2455664
Q ss_pred EEEEEEecCccccceEEeeecc-----cc-CCcccceeeec
Q 035748 378 LIHVLLLGDVTNFKCRVRSKRK-----FD-MSEPLAFQAIK 412 (655)
Q Consensus 378 Li~v~l~gD~~~~~CrVRs~~k-----~d-~~~pvalqaIK 412 (655)
++++||.-..-|..-..-| ++ +-.||+--.|.
T Consensus 291 ---lLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~ 328 (476)
T KOG0646|consen 291 ---LLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQIN 328 (476)
T ss_pred ---EEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEee
Confidence 5678999888887655433 22 44555555553
No 17
>PTZ00421 coronin; Provisional
Probab=87.62 E-value=21 Score=39.86 Aligned_cols=124 Identities=8% Similarity=0.086 Sum_probs=71.8
Q ss_pred CccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEee---ecCceE
Q 035748 162 SDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTG---HENGVI 237 (655)
Q Consensus 162 a~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTG---HadG~V 237 (655)
..|+++..-|. ..++|+|...|.|.+++.. |..+.++..-. .++...+.+. . .+..++.+| ..||.|
T Consensus 169 ~~V~sla~spd------G~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~-~~~~~~~~w~-~-~~~~ivt~G~s~s~Dr~V 239 (493)
T PTZ00421 169 DQITSLEWNLD------GSLLCTTSKDKKLNIIDPRDGTIVSSVEAHA-SAKSQRCLWA-K-RKDLIITLGCSKSQQRQI 239 (493)
T ss_pred CceEEEEEECC------CCEEEEecCCCEEEEEECCCCcEEEEEecCC-CCcceEEEEc-C-CCCeEEEEecCCCCCCeE
Confidence 34666666552 3689999999999999755 99887776443 3333334443 2 345566555 468888
Q ss_pred EEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee-CCeEEEE
Q 035748 238 LIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE-NGMVHGT 309 (655)
Q Consensus 238 ~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre-nGtl~G~ 309 (655)
.+..+.. .... +. .+ ..+......+-.|......+++++..+|.|++|.- ++.++-.
T Consensus 240 klWDlr~---~~~p--~~-----~~-----~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 240 MLWDTRK---MASP--YS-----TV-----DLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFC 297 (493)
T ss_pred EEEeCCC---CCCc--ee-----Ee-----ccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEE
Confidence 7655432 1110 00 00 11122333444566655555555667999999976 4655443
No 18
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=87.41 E-value=18 Score=33.79 Aligned_cols=107 Identities=18% Similarity=0.208 Sum_probs=74.9
Q ss_pred cceeeeccCCCCCCcceeEEeecccceEEEEccCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEE
Q 035748 164 PTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVY 243 (655)
Q Consensus 164 aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~ 243 (655)
|+|+.+..+.+.. . ..+.||-+...|-||..+ +++.|.... +.||.|.. + .+.-.+.|.+||+|-+++=-
T Consensus 2 V~al~~~d~d~dg-~-~eLlvGs~D~~IRvf~~~-e~~~Ei~e~--~~v~~L~~-~----~~~~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDG-E-NELLVGSDDFEIRVFKGD-EIVAEITET--DKVTSLCS-L----GGGRFAYALANGTVGVYDRS 71 (111)
T ss_pred eeEEEEEecCCCC-c-ceEEEecCCcEEEEEeCC-cEEEEEecc--cceEEEEE-c----CCCEEEEEecCCEEEEEeCc
Confidence 6788888876543 2 678899999999999765 788887754 67888554 4 23448899999999988321
Q ss_pred ecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCc--eeEEEEeeCCCcEEE
Q 035748 244 EKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGR--MRYILSADASGKIRV 299 (655)
Q Consensus 244 Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr--~RYVlsaDasGrV~V 299 (655)
.|.. +......++.+-.|.+.+ .+-++++-.+|||.+
T Consensus 72 ---------------~RlW----RiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 72 ---------------QRLW----RIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred ---------------ceee----eeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 1222 112333467777777663 567888999999875
No 19
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=85.98 E-value=1.2 Score=51.90 Aligned_cols=71 Identities=18% Similarity=0.386 Sum_probs=54.5
Q ss_pred CccceeeeccCCCCCCcceeEEeecccceEEEEc-cCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEE
Q 035748 162 SDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFL-RNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIH 240 (655)
Q Consensus 162 a~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs-~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~h 240 (655)
++|+|+.+=| ..||.|-||+.|.|-+.+ ++|..+.++..- ..-|++ ++| .|.-++||+||+|-+|.+-
T Consensus 578 ~~V~al~~Sp------~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H-t~ti~S-lsF---S~dg~vLasgg~DnsV~lW 646 (707)
T KOG0263|consen 578 GPVTALAFSP------CGRYLASGDEDGLIKIWDLANGSLVKQLKGH-TGTIYS-LSF---SRDGNVLASGGADNSVRLW 646 (707)
T ss_pred CceEEEEEcC------CCceEeecccCCcEEEEEcCCCcchhhhhcc-cCceeE-EEE---ecCCCEEEecCCCCeEEEE
Confidence 3455555555 569999999999999995 557888877766 666777 444 4678899999999999876
Q ss_pred EEE
Q 035748 241 KVY 243 (655)
Q Consensus 241 rV~ 243 (655)
.+.
T Consensus 647 D~~ 649 (707)
T KOG0263|consen 647 DLT 649 (707)
T ss_pred Ech
Confidence 554
No 20
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=85.34 E-value=4.5 Score=46.28 Aligned_cols=147 Identities=24% Similarity=0.318 Sum_probs=98.6
Q ss_pred eeecCCccceeeeccCCCCCCcceeEEeecccceEEEEccCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCce
Q 035748 157 AVKLESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGV 236 (655)
Q Consensus 157 Avklda~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~ 236 (655)
--+++-++-|+.+=|+- -+|+|...|+.+|+...-+.++..+|. ++|+++ +.|. . .-.+++.|..|+.
T Consensus 403 t~~~~d~~~~~~fhpsg-------~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~-v~ys-p--~G~~lAvgs~d~~ 470 (626)
T KOG2106|consen 403 TKIIEDPAECADFHPSG-------VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSV-VRYS-P--DGAFLAVGSHDNH 470 (626)
T ss_pred EEEecCceeEeeccCcc-------eEEEeeccceEEEEecccceeEEEEec-CCceEE-EEEc-C--CCCEEEEecCCCe
Confidence 34667788888877753 699999999999998886778888888 999998 6774 3 5688999999999
Q ss_pred EEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeCCeEEEEEeccCCC
Q 035748 237 ILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKENGMVHGTAAMLSSK 316 (655)
Q Consensus 237 V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFrenGtl~G~aa~~~Sr 316 (655)
|-+.||-+ |-++|+.... -.++|||||.. -....|+.+--.+=.|--|++++ ..
T Consensus 471 iyiy~Vs~-------------~g~~y~r~~k-~~gs~ithLDw--S~Ds~~~~~~S~d~eiLyW~~~~----------~~ 524 (626)
T KOG2106|consen 471 IYIYRVSA-------------NGRKYSRVGK-CSGSPITHLDW--SSDSQFLVSNSGDYEILYWKPSE----------CK 524 (626)
T ss_pred EEEEEECC-------------CCcEEEEeee-ecCceeEEeee--cCCCceEEeccCceEEEEEcccc----------Cc
Confidence 99999965 2255533221 12289999875 34555666655555555554432 12
Q ss_pred ceEEEee--------eeeeeeecCccccccccC
Q 035748 317 PLVFLKQ--------RLLFLTECGAGSLDLRTM 341 (655)
Q Consensus 317 plaFlkQ--------rllfLTe~GaaslDLrtm 341 (655)
.+.-+|. -|=|++--|+..-|+++.
T Consensus 525 ~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~ 557 (626)
T KOG2106|consen 525 QITSVKDVKWATYTCTLGFEVFGGSDGTDINAV 557 (626)
T ss_pred ccceecceeeeeeEEEEEEEEecccCCchHHHh
Confidence 2222331 244555557777777753
No 21
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=84.77 E-value=51 Score=33.93 Aligned_cols=221 Identities=16% Similarity=0.184 Sum_probs=106.7
Q ss_pred eeEEeecccceEEEEcc-CCceEEEEecCCCCCeeEEEEeee-eecceeEEEeeecCceEEEEEEEecCCCC-Ccch-hh
Q 035748 180 KYVAVGDDKGRVFVFLR-NGDVSVEFYTMSELPVTAMVSYVS-VYKNESVLVTGHENGVILIHKVYEKPNGE-DWSS-LV 255 (655)
Q Consensus 180 kY~AVGD~~Grv~Vfs~-~GDvl~E~~T~~~spVTAm~SYls-vrRNeT~lVTGHadG~V~~hrV~Es~~gd-D~~s-Ls 255 (655)
..+.++...|.|+.+++ +|+++-++..... +++ +.++.+ +.-+ -.++.|..+|.|....+.. |. -|.. +.
T Consensus 146 ~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~-~~~-~~~~~sp~~~~-~~v~~~~~~g~v~ald~~t---G~~~W~~~~~ 219 (377)
T TIGR03300 146 GLVVVRTNDGRLTALDAATGERLWTYSRVTP-ALT-LRGSASPVIAD-GGVLVGFAGGKLVALDLQT---GQPLWEQRVA 219 (377)
T ss_pred CEEEEECCCCeEEEEEcCCCceeeEEccCCC-cee-ecCCCCCEEEC-CEEEEECCCCEEEEEEccC---CCEeeeeccc
Confidence 35677888899999987 5999988876432 111 110111 1113 3567888899887665432 21 1311 00
Q ss_pred hhh-ccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee-CCeEEEEEeccCCCceEEEeeeeeeeeecC-
Q 035748 256 IEN-VGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE-NGMVHGTAAMLSSKPLVFLKQRLLFLTECG- 332 (655)
Q Consensus 256 ~e~-~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre-nGtl~G~aa~~~SrplaFlkQrllfLTe~G- 332 (655)
... ..... ....-.+.|+.+ + .+|.+++.+|.+..|+. +|.+.=..........+....+|...++.|
T Consensus 220 ~~~g~~~~~-~~~~~~~~p~~~------~--~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~~~G~ 290 (377)
T TIGR03300 220 LPKGRTELE-RLVDVDGDPVVD------G--GQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPAVDDNRLYVTDADGV 290 (377)
T ss_pred cCCCCCchh-hhhccCCccEEE------C--CEEEEEEcCCEEEEEECCCCcEEEeeccCCccCceEeCCEEEEECCCCe
Confidence 000 00000 000112334432 2 35666777889999987 676544331222233344566777777666
Q ss_pred ccccccccCc-cccc-ccCCCCcccceeeeccccccceeeeeccCCcEEEEEEecCccccceEEeeeccccCCcccceee
Q 035748 333 AGSLDLRTMK-LRET-ECEGLNNSLVRNYVFDATERSKAYGYTSEGDLIHVLLLGDVTNFKCRVRSKRKFDMSEPLAFQA 410 (655)
Q Consensus 333 aaslDLrtm~-vr~~-pCeGLN~S~i~syaFD~~~rsKaYG~T~~G~Li~v~l~gD~~~~~CrVRs~~k~d~~~pvalqa 410 (655)
+-.+|..+=+ +++. .+.+-.-+.+.- .-.+.|-.+.+|.+. ++ ..+......+...... .+ ..+...
T Consensus 291 l~~~d~~tG~~~W~~~~~~~~~~ssp~i------~g~~l~~~~~~G~l~-~~-d~~tG~~~~~~~~~~~-~~--~~sp~~ 359 (377)
T TIGR03300 291 VVALDRRSGSELWKNDELKYRQLTAPAV------VGGYLVVGDFEGYLH-WL-SREDGSFVARLKTDGS-GI--ASPPVV 359 (377)
T ss_pred EEEEECCCCcEEEccccccCCccccCEE------ECCEEEEEeCCCEEE-EE-ECCCCCEEEEEEcCCC-cc--ccCCEE
Confidence 4566876643 3444 222211111111 124667777777533 22 1222222111111110 01 223345
Q ss_pred eceeEEEEecc-eEEEE
Q 035748 411 IKGYLLVVCEE-KIFVY 426 (655)
Q Consensus 411 IKGYlLvas~~-~V~Vy 426 (655)
+.+.|+|++.+ +|.+|
T Consensus 360 ~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 360 VGDGLLVQTRDGDLYAF 376 (377)
T ss_pred ECCEEEEEeCCceEEEe
Confidence 56788888887 46543
No 22
>PTZ00420 coronin; Provisional
Probab=84.59 E-value=84 Score=36.27 Aligned_cols=118 Identities=9% Similarity=0.086 Sum_probs=76.2
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-Cce--------EEEEecCCCCCeeEEEEeeeeecceeEEEee
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDV--------SVEFYTMSELPVTAMVSYVSVYKNESVLVTG 231 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDv--------l~E~~T~~~spVTAm~SYlsvrRNeT~lVTG 231 (655)
...|+++..-|+. ..++|.|.+.|.|.+..-. +.. ++.+ .+-..+|+.+ ++ +. -+..+|+||
T Consensus 74 ~~~V~~lafsP~~-----~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L-~gH~~~V~sV-af-~P-~g~~iLaSg 144 (568)
T PTZ00420 74 TSSILDLQFNPCF-----SEILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL-KGHKKKISII-DW-NP-MNYYIMCSS 144 (568)
T ss_pred CCCEEEEEEcCCC-----CCEEEEEeCCCeEEEEECCCCCccccccccceEEe-ecCCCcEEEE-EE-CC-CCCeEEEEE
Confidence 5678888887763 3489999999999999643 432 1222 2334678874 43 23 256788999
Q ss_pred ecCceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC-CeE
Q 035748 232 HENGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN-GMV 306 (655)
Q Consensus 232 HadG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren-Gtl 306 (655)
..||.|.+..+.. +... ..+ . ....|+.+.++.-|. +++++-.+|.|++|... |..
T Consensus 145 S~DgtIrIWDl~t---g~~~--------~~i---~---~~~~V~SlswspdG~--lLat~s~D~~IrIwD~Rsg~~ 201 (568)
T PTZ00420 145 GFDSFVNIWDIEN---EKRA--------FQI---N---MPKKLSSLKWNIKGN--LLSGTCVGKHMHIIDPRKQEI 201 (568)
T ss_pred eCCCeEEEEECCC---CcEE--------EEE---e---cCCcEEEEEECCCCC--EEEEEecCCEEEEEECCCCcE
Confidence 9999998765542 1111 111 1 123588887766544 67777788999999874 544
No 23
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=82.81 E-value=5.9 Score=42.23 Aligned_cols=61 Identities=16% Similarity=0.259 Sum_probs=44.6
Q ss_pred CcceeEEeecccceEEEEcc----------CCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEe
Q 035748 177 GHSKYVAVGDDKGRVFVFLR----------NGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYE 244 (655)
Q Consensus 177 glskY~AVGD~~Grv~Vfs~----------~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~E 244 (655)
+..+|+++|...|.|+||+- .|...+-..-..+-||-.|.+| +-+|++|.+ |.|..-.-.|
T Consensus 20 p~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~------d~~Lls~gd-G~V~gw~W~E 90 (325)
T KOG0649|consen 20 PSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH------DDFLLSGGD-GLVYGWEWNE 90 (325)
T ss_pred CcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee------hhheeeccC-ceEEEeeehh
Confidence 45789999999999999963 2444444445568899998887 556777755 9987765554
No 24
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=80.68 E-value=15 Score=43.06 Aligned_cols=111 Identities=18% Similarity=0.308 Sum_probs=68.5
Q ss_pred eeEEeecccceEEEEccCCceEEEEecCCC---CCeeEEEEeeeeecceeEEEeeecCceEEEEEEEecCCCCCcchhhh
Q 035748 180 KYVAVGDDKGRVFVFLRNGDVSVEFYTMSE---LPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWSSLVI 256 (655)
Q Consensus 180 kY~AVGD~~Grv~Vfs~~GDvl~E~~T~~~---spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~ 256 (655)
.-.+||=+.|.++.|+-.=| .+++++... +.|=+ ++--+..+=|++|..||.|. +|..-.+..-+-..|
T Consensus 123 ~~l~IgcddGvl~~~s~~p~-~I~~~r~l~rq~sRvLs----lsw~~~~~~i~~Gs~Dg~Ir---iwd~~~~~t~~~~~~ 194 (691)
T KOG2048|consen 123 TILAIGCDDGVLYDFSIGPD-KITYKRSLMRQKSRVLS----LSWNPTGTKIAGGSIDGVIR---IWDVKSGQTLHIITM 194 (691)
T ss_pred ceEEeecCCceEEEEecCCc-eEEEEeecccccceEEE----EEecCCccEEEecccCceEE---EEEcCCCceEEEeee
Confidence 56899988889999988866 567775533 44444 23335566689999999885 555444444331111
Q ss_pred hhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee-CCeE
Q 035748 257 ENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE-NGMV 306 (655)
Q Consensus 257 e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre-nGtl 306 (655)
++ ++-..+.++..--+--. |=..|+++|..|.|.+|.. +|||
T Consensus 195 ----~~---d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~gTL 237 (691)
T KOG2048|consen 195 ----QL---DRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFGTL 237 (691)
T ss_pred ----cc---cccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCcch
Confidence 12 11122222222222222 5568999999999999998 5776
No 25
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=79.27 E-value=20 Score=42.87 Aligned_cols=76 Identities=24% Similarity=0.395 Sum_probs=56.5
Q ss_pred eeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEe--------cCCCCC
Q 035748 180 KYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYE--------KPNGED 250 (655)
Q Consensus 180 kY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~E--------s~~gdD 250 (655)
.++|.|=+.|+|=|..-. |=-.+ ..|.-.|-||+ +.++ ++..+|++-.=||+|++|.+.. +|...-
T Consensus 363 q~iaTG~eDgKVKvWn~~SgfC~v-TFteHts~Vt~-v~f~---~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Q 437 (893)
T KOG0291|consen 363 QLIATGAEDGKVKVWNTQSGFCFV-TFTEHTSGVTA-VQFT---ARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQ 437 (893)
T ss_pred cEEEeccCCCcEEEEeccCceEEE-EeccCCCceEE-EEEE---ecCCEEEEeecCCeEEeeeecccceeeeecCCCcee
Confidence 489999999999999777 55444 34555788999 5544 6788999999999999999874 676665
Q ss_pred cchhhhhhcc
Q 035748 251 WSSLVIENVG 260 (655)
Q Consensus 251 ~~sLs~e~~r 260 (655)
+..|+..-++
T Consensus 438 fscvavD~sG 447 (893)
T KOG0291|consen 438 FSCVAVDPSG 447 (893)
T ss_pred eeEEEEcCCC
Confidence 5555444333
No 26
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=78.22 E-value=20 Score=40.71 Aligned_cols=172 Identities=19% Similarity=0.256 Sum_probs=90.6
Q ss_pred ceeeeccCCCCCC----cceeEEe---ecccceEEEEccCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceE
Q 035748 165 TCINILPFRDYEG----HSKYVAV---GDDKGRVFVFLRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVI 237 (655)
Q Consensus 165 Tal~vLP~r~~~g----lskY~AV---GD~~Grv~Vfs~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V 237 (655)
-|.|+++--..-+ +-++.-+ .|...+|+-+. +|..+- +-.+...||++|. .|+..||+|.+||.|
T Consensus 282 ~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~-n~~~l~-l~~~h~~~V~~v~------~~~~~lvsgs~d~~v 353 (537)
T KOG0274|consen 282 ECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVT-NGACLN-LLRGHTGPVNCVQ------LDEPLLVSGSYDGTV 353 (537)
T ss_pred cEEEEecCCCceEEEEEccCceEeeccCCceEEEEecc-CcceEE-EeccccccEEEEE------ecCCEEEEEecCceE
Confidence 5888887322222 2333444 48888888776 666443 3333678888843 369999999999999
Q ss_pred EEEEEEe-----cCCC--CCcchhhhhh-ccccccccCC-------CCC-CceEEEEEee------cCceeEEEEeeCCC
Q 035748 238 LIHKVYE-----KPNG--EDWSSLVIEN-VGKYVATENG-------EEG-LSVTLLEVHH------IGRMRYILSADASG 295 (655)
Q Consensus 238 ~~hrV~E-----s~~g--dD~~sLs~e~-~r~~~~~e~~-------~d~-~pVt~LE~hr------vGr~RYVlsaDasG 295 (655)
.+-++.. +..| .-.-+|.... .+.++.+... +.. ..+..|.-|. ..+-.+++++-++|
T Consensus 354 ~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~ 433 (537)
T KOG0274|consen 354 KVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADG 433 (537)
T ss_pred EEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccc
Confidence 9888774 2222 1112333333 3333222110 111 1222221111 33455899999999
Q ss_pred cEEEEee--CCeEEEEEeccCCCceEEEe---eeeeeeeecCcccc-ccccCcccc
Q 035748 296 KIRVFKE--NGMVHGTAAMLSSKPLVFLK---QRLLFLTECGAGSL-DLRTMKLRE 345 (655)
Q Consensus 296 rV~VFre--nGtl~G~aa~~~SrplaFlk---QrllfLTe~Gaasl-DLrtm~vr~ 345 (655)
.|.+|+- ++-++..- .+..-.+-++. .-++--+.-|---+ ||++++...
T Consensus 434 ~Ik~WD~~~~~~~~~~~-~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 434 TIKLWDAEEGECLRTLE-GRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred cEEEeecccCceeeeec-cCCcccEEEeecCcceEEEEecCCeeEEEecccCchhh
Confidence 9999955 45444444 21223344443 22332222222222 777766443
No 27
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=77.88 E-value=13 Score=39.87 Aligned_cols=122 Identities=20% Similarity=0.398 Sum_probs=77.4
Q ss_pred cceeEEeecccceEEEE-ccCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEe-------cCCCC
Q 035748 178 HSKYVAVGDDKGRVFVF-LRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYE-------KPNGE 249 (655)
Q Consensus 178 lskY~AVGD~~Grv~Vf-s~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~E-------s~~gd 249 (655)
-.|+...|-+.|.+-|. .++ +.|+=.-...|||+.++-+ -|++=|++|-++|.|.+-.|.+ -|+-|
T Consensus 94 dgrWMyTgseDgt~kIWdlR~--~~~qR~~~~~spVn~vvlh----pnQteLis~dqsg~irvWDl~~~~c~~~liPe~~ 167 (311)
T KOG0315|consen 94 DGRWMYTGSEDGTVKIWDLRS--LSCQRNYQHNSPVNTVVLH----PNQTELISGDQSGNIRVWDLGENSCTHELIPEDD 167 (311)
T ss_pred cCeEEEecCCCceEEEEeccC--cccchhccCCCCcceEEec----CCcceEEeecCCCcEEEEEccCCccccccCCCCC
Confidence 45788899999988887 333 4444444446999997765 4999999999999999988886 23333
Q ss_pred Cc-chhhhhhcccccccc------------CC---CCCCceEEEEEee--------cCceeEEEEeeCCCcEEEEeeCCe
Q 035748 250 DW-SSLVIENVGKYVATE------------NG---EEGLSVTLLEVHH--------IGRMRYILSADASGKIRVFKENGM 305 (655)
Q Consensus 250 D~-~sLs~e~~r~~~~~e------------~~---~d~~pVt~LE~hr--------vGr~RYVlsaDasGrV~VFrenGt 305 (655)
.. .+|++.-.++..... .+ .+=.||+-+-+|. -....|++.|-++-.+.||.-++.
T Consensus 168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 32 356666555432111 11 1122555555553 234556666667777777766554
No 28
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=77.73 E-value=83 Score=31.73 Aligned_cols=225 Identities=16% Similarity=0.176 Sum_probs=107.0
Q ss_pred eEEeecccceEEEEccC--Cce--EEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEecCCCCCcchhhh
Q 035748 181 YVAVGDDKGRVFVFLRN--GDV--SVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWSSLVI 256 (655)
Q Consensus 181 Y~AVGD~~Grv~Vfs~~--GDv--l~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~ 256 (655)
|+|-++ .|.|++++-+ |.+ +-.+.+. ..| ..| + ++. -...+.|++..++.|.+.++.+ +.. |..
T Consensus 5 y~~~~~-~~~I~~~~~~~~g~l~~~~~~~~~-~~~-~~l-~-~sp-d~~~lyv~~~~~~~i~~~~~~~----~g~--l~~ 72 (330)
T PRK11028 5 YIASPE-SQQIHVWNLNHEGALTLLQVVDVP-GQV-QPM-V-ISP-DKRHLYVGVRPEFRVLSYRIAD----DGA--LTF 72 (330)
T ss_pred EEEcCC-CCCEEEEEECCCCceeeeeEEecC-CCC-ccE-E-ECC-CCCEEEEEECCCCcEEEEEECC----CCc--eEE
Confidence 555444 5788888653 652 2222232 222 221 2 123 2345556777899998887753 111 111
Q ss_pred hhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee--CCeEE---EEEe-ccCCCceEEEe-eeeeeee
Q 035748 257 ENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE--NGMVH---GTAA-MLSSKPLVFLK-QRLLFLT 329 (655)
Q Consensus 257 e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre--nGtl~---G~aa-~~~SrplaFlk-QrllfLT 329 (655)
. ... ..+ + ...++-+..-|+.=|+. ...+|+|.||.- +|.+. .... .+....++|-+ .+.+|.+
T Consensus 73 ~--~~~---~~~--~-~p~~i~~~~~g~~l~v~-~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~ 143 (330)
T PRK11028 73 A--AES---PLP--G-SPTHISTDHQGRFLFSA-SYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVP 143 (330)
T ss_pred e--eee---cCC--C-CceEEEECCCCCEEEEE-EcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEe
Confidence 1 111 011 1 24566666555543444 345899999965 35332 1110 01112334443 4577777
Q ss_pred ecCcccc---ccccCcccc------cccCCCCcccceeeeccccccceeeeeccCCcEEEEEEecC-ccccceEEeeecc
Q 035748 330 ECGAGSL---DLRTMKLRE------TECEGLNNSLVRNYVFDATERSKAYGYTSEGDLIHVLLLGD-VTNFKCRVRSKRK 399 (655)
Q Consensus 330 e~Gaasl---DLrtm~vr~------~pCeGLN~S~i~syaFD~~~rsKaYG~T~~G~Li~v~l~gD-~~~~~CrVRs~~k 399 (655)
..|...+ |+.+...-. ... .-|+.++..+|++..+ ++|-.++...-|.++-.=+ ...+++.- ....
T Consensus 144 ~~~~~~v~v~d~~~~g~l~~~~~~~~~~--~~g~~p~~~~~~pdg~-~lyv~~~~~~~v~v~~~~~~~~~~~~~~-~~~~ 219 (330)
T PRK11028 144 CLKEDRIRLFTLSDDGHLVAQEPAEVTT--VEGAGPRHMVFHPNQQ-YAYCVNELNSSVDVWQLKDPHGEIECVQ-TLDM 219 (330)
T ss_pred eCCCCEEEEEEECCCCcccccCCCceec--CCCCCCceEEECCCCC-EEEEEecCCCEEEEEEEeCCCCCEEEEE-EEec
Confidence 7776654 555422100 011 1245566667775433 5666666555555544321 11222211 1000
Q ss_pred c--cCCc---c--cceeeeceeEEEEec--ceEEEEEeec
Q 035748 400 F--DMSE---P--LAFQAIKGYLLVVCE--EKIFVYNVSA 430 (655)
Q Consensus 400 ~--d~~~---p--valqaIKGYlLvas~--~~V~VyNvTs 430 (655)
. +... + +++.-=..||+++++ ..|.||++..
T Consensus 220 ~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 220 MPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred CCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 0 0101 1 233333459999876 6899999865
No 29
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=77.26 E-value=42 Score=38.28 Aligned_cols=182 Identities=19% Similarity=0.272 Sum_probs=104.5
Q ss_pred eeEEEEeeCCCcEEEEeeCC-----eEEEEEeccCCCceEEEe---e-------------eeeeeeecCccccccccCc-
Q 035748 285 MRYILSADASGKIRVFKENG-----MVHGTAAMLSSKPLVFLK---Q-------------RLLFLTECGAGSLDLRTMK- 342 (655)
Q Consensus 285 ~RYVlsaDasGrV~VFrenG-----tl~G~aa~~~SrplaFlk---Q-------------rllfLTe~GaaslDLrtm~- 342 (655)
.|-.+++|++|+|+||..+- ++++.- -|+-+.| | +..|--+.+...+||-.-+
T Consensus 80 G~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~-----apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htD 154 (487)
T KOG0310|consen 80 GRLLAAGDESGHVKVFDMKSRVILRQLYAHQ-----APVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTD 154 (487)
T ss_pred CeEEEccCCcCcEEEeccccHHHHHHHhhcc-----CceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcc
Confidence 46789999999999999752 233333 2333332 2 4455555555566776555
Q ss_pred -ccccccCCCCcccceeeeccccccceeeeeccCCcEEEEEEecCccccceEEeeeccccCCcccceeeeceeEEEEe--
Q 035748 343 -LRETECEGLNNSLVRNYVFDATERSKAYGYTSEGDLIHVLLLGDVTNFKCRVRSKRKFDMSEPLAFQAIKGYLLVVC-- 419 (655)
Q Consensus 343 -vr~~pCeGLN~S~i~syaFD~~~rsKaYG~T~~G~Li~v~l~gD~~~~~CrVRs~~k~d~~~pvalqaIKGYlLvas-- 419 (655)
||.-.|.-.|+..+++..||-.- |.|=.-..+..+.-+=. .|. +|..++|.+=. +||+
T Consensus 155 YVR~g~~~~~~~hivvtGsYDg~v--rl~DtR~~~~~v~elnh------g~p--------Ve~vl~lpsgs---~iasAg 215 (487)
T KOG0310|consen 155 YVRCGDISPANDHIVVTGSYDGKV--RLWDTRSLTSRVVELNH------GCP--------VESVLALPSGS---LIASAG 215 (487)
T ss_pred eeEeeccccCCCeEEEecCCCceE--EEEEeccCCceeEEecC------CCc--------eeeEEEcCCCC---EEEEcC
Confidence 89999999999999999999543 34554444443332211 132 23344444422 3333
Q ss_pred cceEEEEEeec---------ee--------eeccCCCccccccChHHHHHhhccccccccccccccccCCceE---EecC
Q 035748 420 EEKIFVYNVSA---------QH--------YVRSGGPRLLFSAGLDEIRSSFLNYQVMDVDVNDEKRRSVPLI---ASDR 479 (655)
Q Consensus 420 ~~~V~VyNvTs---------q~--------y~Rv~~PR~Lfsa~L~~i~s~Fl~~~~~~~~~~~~~~a~~PLI---ASdR 479 (655)
...|-||.+++ +| +++-+ +.|.|.+||-==..|--+.--.. -+-.=.-|++ -|+.
T Consensus 216 Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~--~rLlS~sLD~~VKVfd~t~~Kvv---~s~~~~~pvLsiavs~d 290 (487)
T KOG0310|consen 216 GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDS--TRLLSGSLDRHVKVFDTTNYKVV---HSWKYPGPVLSIAVSPD 290 (487)
T ss_pred CCeEEEEEecCCceehhhhhcccceEEEEEeecCC--ceEeecccccceEEEEccceEEE---EeeecccceeeEEecCC
Confidence 35678888872 12 22222 77888888864444431100000 0111122333 3555
Q ss_pred CceEEEeeCCcEEEEE
Q 035748 480 DKLLVLGLGGGYVGMY 495 (655)
Q Consensus 480 ekLVVlglgdGyVa~Y 495 (655)
+.-+|+|+.||.|.+=
T Consensus 291 d~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 291 DQTVVIGMSNGLVSIR 306 (487)
T ss_pred CceEEEecccceeeee
Confidence 5669999999999865
No 30
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=74.87 E-value=17 Score=41.26 Aligned_cols=142 Identities=18% Similarity=0.209 Sum_probs=88.8
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccCCceE-EEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRNGDVS-VEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILI 239 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~GDvl-~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~ 239 (655)
.+.=.-+|+.-|.-.++ .-++-||+.+.+-++..++..+ +|..+. .--|++ .+.++. |..+||||.=||.|..
T Consensus 107 ~ah~apv~~~~f~~~d~--t~l~s~sDd~v~k~~d~s~a~v~~~l~~h-tDYVR~-g~~~~~--~~hivvtGsYDg~vrl 180 (487)
T KOG0310|consen 107 YAHQAPVHVTKFSPQDN--TMLVSGSDDKVVKYWDLSTAYVQAELSGH-TDYVRC-GDISPA--NDHIVVTGSYDGKVRL 180 (487)
T ss_pred hhccCceeEEEecccCC--eEEEecCCCceEEEEEcCCcEEEEEecCC-cceeEe-eccccC--CCeEEEecCCCceEEE
Confidence 44444455555554444 3578899999999998886654 344444 556887 565544 9999999999999998
Q ss_pred EEEEec-------CCCCCcch-hhhhhcccccccc----------CC--------CCCCceEEEEEeecCceeEEEEeeC
Q 035748 240 HKVYEK-------PNGEDWSS-LVIENVGKYVATE----------NG--------EEGLSVTLLEVHHIGRMRYILSADA 293 (655)
Q Consensus 240 hrV~Es-------~~gdD~~s-Ls~e~~r~~~~~e----------~~--------~d~~pVt~LE~hrvGr~RYVlsaDa 293 (655)
|.++-. -||.--.+ |++-+-..++... .| .-...||-|-++.=+ .=++++--
T Consensus 181 ~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~--~rLlS~sL 258 (487)
T KOG0310|consen 181 WDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDS--TRLLSGSL 258 (487)
T ss_pred EEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCC--ceEeeccc
Confidence 877742 12222111 1111101111000 01 145689999888854 67889999
Q ss_pred CCcEEEEe-eC-CeEEEEE
Q 035748 294 SGKIRVFK-EN-GMVHGTA 310 (655)
Q Consensus 294 sGrV~VFr-en-Gtl~G~a 310 (655)
+|+|.||+ .| -.+|+.-
T Consensus 259 D~~VKVfd~t~~Kvv~s~~ 277 (487)
T KOG0310|consen 259 DRHVKVFDTTNYKVVHSWK 277 (487)
T ss_pred ccceEEEEccceEEEEeee
Confidence 99999999 44 4456654
No 31
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=74.46 E-value=5 Score=43.71 Aligned_cols=107 Identities=24% Similarity=0.452 Sum_probs=71.4
Q ss_pred CccceeeeccCCCCCCcceeEEeecccceEEEEccC-----CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCce
Q 035748 162 SDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-----GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGV 236 (655)
Q Consensus 162 a~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-----GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~ 236 (655)
+.+||++| -.+|+|-|-+.-+|++++-. |+++ .| +..||||.-|+...+| .|++||+||.
T Consensus 44 ~sitavAV--------s~~~~aSGssDetI~IYDm~k~~qlg~ll-~H----agsitaL~F~~~~S~s--hLlS~sdDG~ 108 (362)
T KOG0294|consen 44 GSITALAV--------SGPYVASGSSDETIHIYDMRKRKQLGILL-SH----AGSITALKFYPPLSKS--HLLSGSDDGH 108 (362)
T ss_pred cceeEEEe--------cceeEeccCCCCcEEEEeccchhhhccee-cc----ccceEEEEecCCcchh--heeeecCCCc
Confidence 45677766 35899999999999998422 6644 34 4569999999866555 9999999999
Q ss_pred EEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEe
Q 035748 237 ILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFK 301 (655)
Q Consensus 237 V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFr 301 (655)
|.+-|+ .+|. .++.+ +.-.+. ||+|-+|--|+- -|+--.++.++.|.
T Consensus 109 i~iw~~------~~W~-----~~~sl----K~H~~~-Vt~lsiHPS~KL--ALsVg~D~~lr~WN 155 (362)
T KOG0294|consen 109 IIIWRV------GSWE-----LLKSL----KAHKGQ-VTDLSIHPSGKL--ALSVGGDQVLRTWN 155 (362)
T ss_pred EEEEEc------CCeE-----Eeeee----cccccc-cceeEecCCCce--EEEEcCCceeeeeh
Confidence 999887 4562 22333 112223 777777766553 33444455666654
No 32
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=70.61 E-value=15 Score=25.61 Aligned_cols=31 Identities=13% Similarity=0.255 Sum_probs=24.1
Q ss_pred cCCCCCeeEEEEeeeeecceeEEEeeecCceEEEE
Q 035748 206 TMSELPVTAMVSYVSVYKNESVLVTGHENGVILIH 240 (655)
Q Consensus 206 T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~h 240 (655)
.+-..+|++|.- ..+..+|+||..||.|.+.
T Consensus 8 ~~h~~~i~~i~~----~~~~~~~~s~~~D~~i~vw 38 (39)
T PF00400_consen 8 RGHSSSINSIAW----SPDGNFLASGSSDGTIRVW 38 (39)
T ss_dssp ESSSSSEEEEEE----ETTSSEEEEEETTSEEEEE
T ss_pred cCCCCcEEEEEE----ecccccceeeCCCCEEEEE
Confidence 344789999543 2579999999999999764
No 33
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=69.60 E-value=39 Score=40.88 Aligned_cols=160 Identities=20% Similarity=0.263 Sum_probs=99.0
Q ss_pred EEeecccceEEEEc-cCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEecCCCCCcchhhhhhcc
Q 035748 182 VAVGDDKGRVFVFL-RNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWSSLVIENVG 260 (655)
Q Consensus 182 ~AVGD~~Grv~Vfs-~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~~r 260 (655)
+.||=+.|++.++. +.|.+++++..- .+.||++..- .+. -||+-||.||.|.+|-|.- |. -..
T Consensus 175 IvvGs~~G~lql~Nvrt~K~v~~f~~~-~s~IT~ieqs-PaL---DVVaiG~~~G~ViifNlK~----dk-------il~ 238 (910)
T KOG1539|consen 175 IVVGSSQGRLQLWNVRTGKVVYTFQEF-FSRITAIEQS-PAL---DVVAIGLENGTVIIFNLKF----DK-------ILM 238 (910)
T ss_pred EEEeecCCcEEEEEeccCcEEEEeccc-ccceeEeccC-Ccc---eEEEEeccCceEEEEEccc----Cc-------EEE
Confidence 57999999999995 559999999977 4999998873 343 6899999999999998875 11 111
Q ss_pred ccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC-CeEEEEEecc---CCCceEEEeeeeeeeeecCcccc
Q 035748 261 KYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN-GMVHGTAAML---SSKPLVFLKQRLLFLTECGAGSL 336 (655)
Q Consensus 261 ~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren-Gtl~G~aa~~---~SrplaFlkQrllfLTe~Gaasl 336 (655)
+| .. |-.+||.|- +|--+-...++++.+|.+.+|.=+ -.+++..-++ +....-|+.-.=+.+|..+
T Consensus 239 sF---k~--d~g~VtslS-FrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~---- 308 (910)
T KOG1539|consen 239 SF---KQ--DWGRVTSLS-FRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGA---- 308 (910)
T ss_pred EE---Ec--cccceeEEE-eccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccC----
Confidence 23 11 123455543 233333455678888999999864 3444443111 1234445543333444433
Q ss_pred ccccCcccccc-----------------------cCCCCcccceeeeccccccce
Q 035748 337 DLRTMKLRETE-----------------------CEGLNNSLVRNYVFDATERSK 368 (655)
Q Consensus 337 DLrtm~vr~~p-----------------------CeGLN~S~i~syaFD~~~rsK 368 (655)
| +||+++-.. -.|-|+..+.+++=|.+-|+.
T Consensus 309 D-nSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~f 362 (910)
T KOG1539|consen 309 D-NSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSF 362 (910)
T ss_pred C-CceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhh
Confidence 3 333333222 144678888888888765543
No 34
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=68.81 E-value=26 Score=41.16 Aligned_cols=59 Identities=27% Similarity=0.452 Sum_probs=40.5
Q ss_pred ccCCcEEEEEEecCccccceEEe--eeccccC--------CcccceeeeceeEEEEecceEEEEEeecee
Q 035748 373 TSEGDLIHVLLLGDVTNFKCRVR--SKRKFDM--------SEPLAFQAIKGYLLVVCEEKIFVYNVSAQH 432 (655)
Q Consensus 373 T~~G~Li~v~l~gD~~~~~CrVR--s~~k~d~--------~~pvalqaIKGYlLvas~~~V~VyNvTsq~ 432 (655)
-.+||-+.+++ +|..+..-.++ +|++.|. ---|.+|--+-|+||||+..|-+||.+.|-
T Consensus 530 HrkGDYlatV~-~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqe 598 (733)
T KOG0650|consen 530 HRKGDYLATVM-PDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQE 598 (733)
T ss_pred ecCCceEEEec-cCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHH
Confidence 35788776544 45555444444 3555441 114678888999999999999999999873
No 35
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=65.74 E-value=1.6e+02 Score=29.80 Aligned_cols=246 Identities=15% Similarity=0.244 Sum_probs=114.0
Q ss_pred ceeeeeeecCCccceeeeccCCCCCCcceeEEee-cccceEEEEccC--CceE-EEEecCCCCCeeEEEEeeeeec-cee
Q 035748 152 FQFVSAVKLESDPTCINILPFRDYEGHSKYVAVG-DDKGRVFVFLRN--GDVS-VEFYTMSELPVTAMVSYVSVYK-NES 226 (655)
Q Consensus 152 F~fvSAvklda~aTal~vLP~r~~~glskY~AVG-D~~Grv~Vfs~~--GDvl-~E~~T~~~spVTAm~SYlsvrR-NeT 226 (655)
.+++.-++....+..+.+=| +| +|++|| -..+.|++|..+ |.+. ++.......| +|+.... +..
T Consensus 25 l~~~~~~~~~~~~~~l~~sp----d~--~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p-----~~i~~~~~g~~ 93 (330)
T PRK11028 25 LTLLQVVDVPGQVQPMVISP----DK--RHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSP-----THISTDHQGRF 93 (330)
T ss_pred eeeeeEEecCCCCccEEECC----CC--CEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCc-----eEEEECCCCCE
Confidence 34444444444455443333 22 454444 357899888665 4432 2211222233 2333333 445
Q ss_pred EEEeeecCceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEee-CCCcEEEEeeC--
Q 035748 227 VLVTGHENGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSAD-ASGKIRVFKEN-- 303 (655)
Q Consensus 227 ~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaD-asGrV~VFren-- 303 (655)
+.++...+|.|.+..+-+ +|-- .+.++.+ .. ......+-+ .. ..+|+++++ .+++|.||+-+
T Consensus 94 l~v~~~~~~~v~v~~~~~--~g~~-----~~~~~~~---~~---~~~~~~~~~-~p-~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 94 LFSASYNANCVSVSPLDK--DGIP-----VAPIQII---EG---LEGCHSANI-DP-DNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred EEEEEcCCCeEEEEEECC--CCCC-----CCceeec---cC---CCcccEeEe-CC-CCCEEEEeeCCCCEEEEEEECCC
Confidence 666677799998888743 1100 0001111 00 011222222 22 345665555 45999999874
Q ss_pred CeEEE------EEeccCC--CceEEEe-eeeeeeeecCcccc---ccc----cCcc----cccccCCCCcccceeeeccc
Q 035748 304 GMVHG------TAAMLSS--KPLVFLK-QRLLFLTECGAGSL---DLR----TMKL----RETECEGLNNSLVRNYVFDA 363 (655)
Q Consensus 304 Gtl~G------~aa~~~S--rplaFlk-QrllfLTe~Gaasl---DLr----tm~v----r~~pCeGLN~S~i~syaFD~ 363 (655)
|.+.. .. ...+ +-++|-+ .+.+|.+..+...+ |+. +++. ...|.+...........|++
T Consensus 159 g~l~~~~~~~~~~-~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p 237 (330)
T PRK11028 159 GHLVAQEPAEVTT-VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP 237 (330)
T ss_pred CcccccCCCceec-CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC
Confidence 54421 11 1222 4467665 35666666555554 554 1111 11122211111222355666
Q ss_pred cccceeeeeccCCcEEEEEEec-Cc--cccceEEeeeccccCCcccce--eeeceeEEEEec--ceEEEEEeec
Q 035748 364 TERSKAYGYTSEGDLIHVLLLG-DV--TNFKCRVRSKRKFDMSEPLAF--QAIKGYLLVVCE--EKIFVYNVSA 430 (655)
Q Consensus 364 ~~rsKaYG~T~~G~Li~v~l~g-D~--~~~~CrVRs~~k~d~~~pval--qaIKGYlLvas~--~~V~VyNvTs 430 (655)
..+ .+|--+...+.|++|-.- |. ..+.+.+-.. ..|-.+ ..=..||+++++ ..|.||++..
T Consensus 238 dg~-~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-----~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 238 DGR-HLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-----TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CCC-EEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-----ccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 554 345444555666665431 11 1122222211 123333 333459999996 4799998753
No 36
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=65.60 E-value=12 Score=29.73 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=24.9
Q ss_pred CCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEE
Q 035748 207 MSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKV 242 (655)
Q Consensus 207 ~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV 242 (655)
...++|+. ++| ++. --+|+.|.+||+|.+||+
T Consensus 9 ~l~~~v~~-~~w-~P~--mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 9 NLPSRVSC-MSW-CPT--MDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCCCcEEE-EEE-CCC--CCEEEEEECCCeEEEEEC
Confidence 34567884 676 463 349999999999999998
No 37
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=65.03 E-value=17 Score=39.44 Aligned_cols=90 Identities=17% Similarity=0.166 Sum_probs=54.2
Q ss_pred ccceeeeeeecCCc-cceeeeccCCCCCCcceeEEeecccceEEEEccCCceEEEEecCCCCCeeEEEEeeeeecceeEE
Q 035748 150 ERFQFVSAVKLESD-PTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVL 228 (655)
Q Consensus 150 erF~fvSAvklda~-aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~l 228 (655)
=+|+-++.+|+..- +-+|-+=+-... ++|+|++|++.+....--++--.++--..---+-++-.+. ++--+|
T Consensus 109 ~~L~~ls~~ki~~~~~lslD~~~~~~~------i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~-~~pnlv 181 (339)
T KOG0280|consen 109 VHLRGLSSKKISVVEALSLDISTSGTK------IFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSD-KEPNLV 181 (339)
T ss_pred eeecccchhhhhheeeeEEEeeccCce------EEEEcCCCcEEEEecceeeeeecccccccceeeeeeeccc-CCCceE
Confidence 35666777776443 455544443332 8999999999966554222222222212222233343333 566899
Q ss_pred EeeecCceEEEEEEEecCC
Q 035748 229 VTGHENGVILIHKVYEKPN 247 (655)
Q Consensus 229 VTGHadG~V~~hrV~Es~~ 247 (655)
.||.+||++..|.++ .|.
T Consensus 182 ytGgDD~~l~~~D~R-~p~ 199 (339)
T KOG0280|consen 182 YTGGDDGSLSCWDIR-IPK 199 (339)
T ss_pred EecCCCceEEEEEec-CCc
Confidence 999999999999999 444
No 38
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=63.91 E-value=33 Score=42.66 Aligned_cols=116 Identities=24% Similarity=0.280 Sum_probs=77.5
Q ss_pred ceeEEeecccceEEEEcc---CCceEEEEecCCCCCeeEEEEeeeeecceeE-EEeeecCceEEEEEEEecCCCCCcchh
Q 035748 179 SKYVAVGDDKGRVFVFLR---NGDVSVEFYTMSELPVTAMVSYVSVYKNESV-LVTGHENGVILIHKVYEKPNGEDWSSL 254 (655)
Q Consensus 179 skY~AVGD~~Grv~Vfs~---~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~-lVTGHadG~V~~hrV~Es~~gdD~~sL 254 (655)
.--+|+|=+.|+|=||+. +=|.++-.+-.-+.+=. +-.+++.|+-=- ||+|.+||.|-+..++-+ ..+-+.+.
T Consensus 1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~--Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~-~~e~~~~i 1297 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEP--IVHLSLQRQGLGELVSGSQDGDIQLLDLRMS-SKETFLTI 1297 (1387)
T ss_pred CceEEEeecCCceEEeecccCCccccceeecccCCccc--ceeEEeecCCCcceeeeccCCeEEEEecccC-ccccccee
Confidence 467899999999999843 35545554433233311 333567775555 999999999998887753 33332222
Q ss_pred hhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeCCeEEEEE
Q 035748 255 VIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKENGMVHGTA 310 (655)
Q Consensus 255 s~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFrenGtl~G~a 310 (655)
. ..++-|+.+|+|-+|.-- +.|+++-+ +.|.+|.-.|..-+..
T Consensus 1298 v----------~~~~yGs~lTal~VH~ha--piiAsGs~-q~ikIy~~~G~~l~~~ 1340 (1387)
T KOG1517|consen 1298 V----------AHWEYGSALTALTVHEHA--PIIASGSA-QLIKIYSLSGEQLNII 1340 (1387)
T ss_pred e----------eccccCccceeeeeccCC--CeeeecCc-ceEEEEecChhhhccc
Confidence 1 245557799999999753 45555555 9999999888877766
No 39
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.65 E-value=53 Score=36.18 Aligned_cols=129 Identities=22% Similarity=0.313 Sum_probs=71.4
Q ss_pred CccceeeeccCCCCCCcceeEEeeccc-----ceEEEE--ccCC---ceEEEEecCCCCCeeEEEEee-eeecceeEEEe
Q 035748 162 SDPTCINILPFRDYEGHSKYVAVGDDK-----GRVFVF--LRNG---DVSVEFYTMSELPVTAMVSYV-SVYKNESVLVT 230 (655)
Q Consensus 162 a~aTal~vLP~r~~~glskY~AVGD~~-----Grv~Vf--s~~G---Dvl~E~~T~~~spVTAm~SYl-svrRNeT~lVT 230 (655)
++..|+.-=|-|- -..++|||=.. +++++| ..+| ..+.|+. .-..|||. +|+. +.-|-=-+|++
T Consensus 170 ~~~~CvsWn~sr~---~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~-d~~dpI~d-i~wAPn~Gr~y~~lAv 244 (361)
T KOG2445|consen 170 QPCFCVSWNPSRM---HEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP-DHTDPIRD-ISWAPNIGRSYHLLAV 244 (361)
T ss_pred CcceEEeeccccc---cCceEEEEcccCCccccceEEEEecCCcceeeeehhcC-CCCCccee-eeeccccCCceeeEEE
Confidence 4455666554443 34578888433 455555 6667 3445555 55789999 5543 23356678999
Q ss_pred eecCceEEEEEEEe--cCC-------CCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEe
Q 035748 231 GHENGVILIHKVYE--KPN-------GEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFK 301 (655)
Q Consensus 231 GHadG~V~~hrV~E--s~~-------gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFr 301 (655)
+..|| |.+..|.+ |+- ++....|-++.+..| ++-.-+|=.++---- .-.+.++-.+|.||+|+
T Consensus 245 A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~-----~~H~~~VWrv~wNmt--GtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 245 ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSEL-----DDHNGEVWRVRWNMT--GTILSSTGDDGCVRLWK 316 (361)
T ss_pred eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeec-----cCCCCceEEEEEeee--eeEEeecCCCceeeehh
Confidence 99999 99888885 221 111122333333323 111112222111100 11355678899999999
Q ss_pred eC
Q 035748 302 EN 303 (655)
Q Consensus 302 en 303 (655)
.|
T Consensus 317 an 318 (361)
T KOG2445|consen 317 AN 318 (361)
T ss_pred hh
Confidence 86
No 40
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=63.57 E-value=31 Score=40.99 Aligned_cols=65 Identities=31% Similarity=0.390 Sum_probs=51.3
Q ss_pred cceeEEeecccceEEEEc-cCC--ceEEEEe-cCCCCCeeEEEEeeeeeccee--EEEeeecCceEEEEEEE
Q 035748 178 HSKYVAVGDDKGRVFVFL-RNG--DVSVEFY-TMSELPVTAMVSYVSVYKNES--VLVTGHENGVILIHKVY 243 (655)
Q Consensus 178 lskY~AVGD~~Grv~Vfs-~~G--Dvl~E~~-T~~~spVTAm~SYlsvrRNeT--~lVTGHadG~V~~hrV~ 243 (655)
..+|||.+-..-.|-|.. +++ +-+.++. -..+.+||| ++|+++-.||. +|+.|-..|.|.+.|.-
T Consensus 629 de~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTA-v~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 629 DEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTA-VAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred ccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceee-EEeeccccccccceEEEEecccEEEEEecc
Confidence 567899998888888874 446 7777743 445789999 78888888987 58899999999998854
No 41
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=63.43 E-value=57 Score=35.73 Aligned_cols=91 Identities=22% Similarity=0.309 Sum_probs=61.3
Q ss_pred ccccccceeeeeeecC-CccceeeeccCCCCCCcceeEEeecccceEEEEccCCceEEEEe--c------CCCCCeeEE-
Q 035748 146 PFWSERFQFVSAVKLE-SDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRNGDVSVEFY--T------MSELPVTAM- 215 (655)
Q Consensus 146 p~WSerF~fvSAvkld-a~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~GDvl~E~~--T------~~~spVTAm- 215 (655)
|.-.|.|+.+..++.+ .+|||+.. .+ --|+|||=+.|.|.|.+.-|-.++=.. + .....||+|
T Consensus 70 ~~~~~gf~P~~l~~~~~g~vtal~~---S~----iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ie 142 (395)
T PF08596_consen 70 PSLKEGFLPLTLLDAKQGPVTALKN---SD----IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIE 142 (395)
T ss_dssp TT-SEEEEEEEEE---S-SEEEEEE----B----TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEE
T ss_pred cccccccCchhheeccCCcEeEEec---CC----CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEE
Confidence 3446889999999996 88999875 22 249999999999999988865544332 1 234678887
Q ss_pred EEeeeeeccee----EEEeeecCceEEEEEEEe
Q 035748 216 VSYVSVYKNES----VLVTGHENGVILIHKVYE 244 (655)
Q Consensus 216 ~SYlsvrRNeT----~lVTGHadG~V~~hrV~E 244 (655)
-+.| -+.+|. .|+.|...|.+++.+|.-
T Consensus 143 F~vm-~~~~D~ySSi~L~vGTn~G~v~~fkIlp 174 (395)
T PF08596_consen 143 FSVM-TLGGDGYSSICLLVGTNSGNVLTFKILP 174 (395)
T ss_dssp EEEE-E-TTSSSEEEEEEEEETTSEEEEEEEEE
T ss_pred EEEE-ecCCCcccceEEEEEeCCCCEEEEEEec
Confidence 3434 445655 789999999999999974
No 42
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=62.55 E-value=14 Score=41.20 Aligned_cols=103 Identities=17% Similarity=0.247 Sum_probs=78.6
Q ss_pred eEEeecccceEEEEc-cCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEecCCCCCcchhhhhhc
Q 035748 181 YVAVGDDKGRVFVFL-RNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWSSLVIENV 259 (655)
Q Consensus 181 Y~AVGD~~Grv~Vfs-~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~~ 259 (655)
-|.+|++.--+|.|+ ++=+--+.++-+-.|.|.. +.| |+ .-.=.|+|.=|-+|.+..+.++-++|=+++=.|.+|
T Consensus 243 nF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~d-Vdf-sp--tG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V 318 (433)
T KOG0268|consen 243 NFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMD-VDF-SP--TGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHV 318 (433)
T ss_pred ceeeccccccceehhhhhhcccchhhcccceeEEE-ecc-CC--CcchhccccccceEEEeecCCCcchhhhhHhhhhee
Confidence 488999999999994 4433344444454567776 666 34 345578999999999999999999999999999854
Q ss_pred cccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeCC
Q 035748 260 GKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKENG 304 (655)
Q Consensus 260 r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFrenG 304 (655)
=. |---...+||++.--+|.||+|+.|.
T Consensus 319 ~~-----------------Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 319 FC-----------------VKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred eE-----------------EEEeccccEEEecCCCcceeeeecch
Confidence 31 22335678999999999999999874
No 43
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=62.44 E-value=15 Score=42.93 Aligned_cols=83 Identities=20% Similarity=0.221 Sum_probs=65.7
Q ss_pred ceeeeeeecCCccceeeeccCCCCCCcceeEEeecccceEEEEccCCceEEEEecCCCCCeeEEEEeeeeecceeEEEee
Q 035748 152 FQFVSAVKLESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTG 231 (655)
Q Consensus 152 F~fvSAvklda~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTG 231 (655)
+++.-+.++...+-=+-.=|-.+ -+|.+.++|.|-+-+-|-+=+..+.+. +-+||+.+|+ |-.+++|+.|
T Consensus 11 ~~~~~~~~l~~~i~~~ewnP~~d------LiA~~t~~gelli~R~n~qRlwtip~p-~~~v~~sL~W---~~DGkllaVg 80 (665)
T KOG4640|consen 11 NETNGVMSLPINIKRIEWNPKMD------LIATRTEKGELLIHRLNWQRLWTIPIP-GENVTASLCW---RPDGKLLAVG 80 (665)
T ss_pred chhhhhhccccceEEEEEcCccc------hhheeccCCcEEEEEeccceeEeccCC-CCccceeeee---cCCCCEEEEE
Confidence 66666677766666555555443 588999999999888888888888887 7788866665 4679999999
Q ss_pred ecCceEEEEEEEe
Q 035748 232 HENGVILIHKVYE 244 (655)
Q Consensus 232 HadG~V~~hrV~E 244 (655)
-+||.|++|.+.-
T Consensus 81 ~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 81 FKDGTIRLHDVEK 93 (665)
T ss_pred ecCCeEEEEEccC
Confidence 9999999999874
No 44
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=62.28 E-value=1.4e+02 Score=28.09 Aligned_cols=180 Identities=16% Similarity=0.203 Sum_probs=81.4
Q ss_pred eeEEEeeecCceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee-C
Q 035748 225 ESVLVTGHENGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE-N 303 (655)
Q Consensus 225 eT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre-n 303 (655)
+.+++|+..||.|.+..+. .+. -++.+ .... .+..+-+..-|+.-| +++..++.|.+|.. +
T Consensus 1 ~~~~~s~~~d~~v~~~d~~---t~~--------~~~~~---~~~~---~~~~l~~~~dg~~l~-~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTA---TLE--------VTRTF---PVGQ---RPRGITLSKDGKLLY-VCASDSDTIQVIDLAT 62 (300)
T ss_pred CcEEEEecCCCEEEEEECC---CCc--------eEEEE---ECCC---CCCceEECCCCCEEE-EEECCCCeEEEEECCC
Confidence 4678999999988765432 111 11223 1111 123344444343323 34456889999986 4
Q ss_pred CeEEEEEec-cCCCceEEEe-eeeeeeeecCcc---ccccccCcc-cccccCCCCcccceeeeccccccceeeeeccCCc
Q 035748 304 GMVHGTAAM-LSSKPLVFLK-QRLLFLTECGAG---SLDLRTMKL-RETECEGLNNSLVRNYVFDATERSKAYGYTSEGD 377 (655)
Q Consensus 304 Gtl~G~aa~-~~SrplaFlk-QrllfLTe~Gaa---slDLrtm~v-r~~pCeGLN~S~i~syaFD~~~rsKaYG~T~~G~ 377 (655)
|.+...... .....++|-. .+.+|.+...-+ ..|+.+.+. ...+| +..+...+|++....-+++- .++.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~----~~~~~~~~~~~dg~~l~~~~-~~~~ 137 (300)
T TIGR03866 63 GEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV----GVEPEGMAVSPDGKIVVNTS-ETTN 137 (300)
T ss_pred CcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC----CCCcceEEECCCCCEEEEEe-cCCC
Confidence 666555411 1123444443 356666643222 236655332 22222 12234456665444333322 2233
Q ss_pred EEEEEEecCccccceEEeeeccccCCcccceeeeceeEEEEe--cceEEEEEeece
Q 035748 378 LIHVLLLGDVTNFKCRVRSKRKFDMSEPLAFQAIKGYLLVVC--EEKIFVYNVSAQ 431 (655)
Q Consensus 378 Li~v~l~gD~~~~~CrVRs~~k~d~~~pvalqaIKGYlLvas--~~~V~VyNvTsq 431 (655)
.++.+ |....+|....... .....+++..-..+|++.+ ...|.+|++.+.
T Consensus 138 ~~~~~---d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~ 189 (300)
T TIGR03866 138 MAHFI---DTKTYEIVDNVLVD-QRPRFAEFTADGKELWVSSEIGGTVSVIDVATR 189 (300)
T ss_pred eEEEE---eCCCCeEEEEEEcC-CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc
Confidence 44432 32222332111100 0011122222233555654 467999998763
No 45
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.26 E-value=15 Score=45.37 Aligned_cols=97 Identities=21% Similarity=0.303 Sum_probs=65.0
Q ss_pred ceeEEeecccceEEEEccCCceEEEEe--cCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEecCCCCCcchhhh
Q 035748 179 SKYVAVGDDKGRVFVFLRNGDVSVEFY--TMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWSSLVI 256 (655)
Q Consensus 179 skY~AVGD~~Grv~Vfs~~GDvl~E~~--T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~ 256 (655)
.-+.|+|.+.|.|-.|.-.|. +.-++ -.+..|||+ +|+ --+-++|..||++|.|.+-.+... +.
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vts-vaf---n~dg~~l~~G~~~G~V~v~D~~~~----k~----- 164 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTS-VAF---NQDGSLLLAGLGDGHVTVWDMHRA----KI----- 164 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCccee-eEe---cCCCceeccccCCCcEEEEEccCC----cc-----
Confidence 346899999999999988887 45333 456789999 554 258899999999999988665541 10
Q ss_pred hhccccccccCCCCCCceEEEE-EeecCceeEEEEeeCCCc
Q 035748 257 ENVGKYVATENGEEGLSVTLLE-VHHIGRMRYILSADASGK 296 (655)
Q Consensus 257 e~~r~~~~~e~~~d~~pVt~LE-~hrvGr~RYVlsaDasGr 296 (655)
.+ +-.+-+.|+|.+= +-+-++..-++.+|..|.
T Consensus 165 --l~-----~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 165 --LK-----VITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred --ee-----eeeecCCccceEEEEEEeCCCcEEEEccCCCc
Confidence 01 1123344554422 334555557888888887
No 46
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=61.71 E-value=2.9e+02 Score=35.50 Aligned_cols=215 Identities=17% Similarity=0.178 Sum_probs=117.9
Q ss_pred ccCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEecCCCCCcchhhhhhccccccccCCC-CCCc
Q 035748 195 LRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGE-EGLS 273 (655)
Q Consensus 195 s~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~-d~~p 273 (655)
.+.|-+++.++-. .+.|+- ++ ..+--+++.|||..||+|.+-...+ ..|+. ..+.+.-+.. ++.+
T Consensus 1035 ~p~G~lVAhL~Eh-s~~v~k-~a--~s~~~~s~FvsgS~DGtVKvW~~~k-~~~~~---------~s~rS~ltys~~~sr 1100 (1431)
T KOG1240|consen 1035 NPRGILVAHLHEH-SSAVIK-LA--VSSEHTSLFVSGSDDGTVKVWNLRK-LEGEG---------GSARSELTYSPEGSR 1100 (1431)
T ss_pred CccceEeehhhhc-cccccc-ee--ecCCCCceEEEecCCceEEEeeehh-hhcCc---------ceeeeeEEEeccCCc
Confidence 4457777766655 344553 22 1333449999999999996655554 12221 1121112222 6677
Q ss_pred eEEEEEeecCceeEEEEeeCCCcEEEEeeCC----eEEEEEeccC----CCceEEEe------e--eeeeeeecCc-ccc
Q 035748 274 VTLLEVHHIGRMRYILSADASGKIRVFKENG----MVHGTAAMLS----SKPLVFLK------Q--RLLFLTECGA-GSL 336 (655)
Q Consensus 274 Vt~LE~hrvGr~RYVlsaDasGrV~VFrenG----tl~G~aa~~~----SrplaFlk------Q--rllfLTe~Ga-asl 336 (655)
|+.+-| ++-.-|++++-.+|-|+|++-|- ..++...+-. ..+++-+. | +|+..|..|. .+.
T Consensus 1101 ~~~vt~--~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~ 1178 (1431)
T KOG1240|consen 1101 VEKVTM--CGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSW 1178 (1431)
T ss_pred eEEEEe--ccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEe
Confidence 777555 45556888888999999999864 2333331111 22344343 2 6888998765 556
Q ss_pred ccccCcccccccCCCCcccceeeeccccccceeeeeccCCcEEEEEEecCccccceEEeeeccccC--Ccccceeeece-
Q 035748 337 DLRTMKLRETECEGLNNSLVRNYVFDATERSKAYGYTSEGDLIHVLLLGDVTNFKCRVRSKRKFDM--SEPLAFQAIKG- 413 (655)
Q Consensus 337 DLrtm~vr~~pCeGLN~S~i~syaFD~~~rsKaYG~T~~G~Li~v~l~gD~~~~~CrVRs~~k~d~--~~pvalqaIKG- 413 (655)
|+|++..--+-=..+.|-.+-+.+-|+-.-=-.-| |+.|-|+- | -.||.--+++-..... ..-|.+.-.++
T Consensus 1179 D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviG-ts~G~l~l-W----DLRF~~~i~sw~~P~~~~i~~v~~~~~~~~ 1252 (1431)
T KOG1240|consen 1179 DTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIG-TSRGQLVL-W----DLRFRVPILSWEHPARAPIRHVWLCPTYPQ 1252 (1431)
T ss_pred cchhhhhHHhhhcCccccceeEEEecCCceEEEEe-cCCceEEE-E----EeecCceeecccCcccCCcceEEeeccCCC
Confidence 99987654444444556666777777766522223 45554321 1 2344444433322211 11233333333
Q ss_pred --eEEEEec---ceEEEEEeece
Q 035748 414 --YLLVVCE---EKIFVYNVSAQ 431 (655)
Q Consensus 414 --YlLvas~---~~V~VyNvTsq 431 (655)
|...++. ..|.+||...+
T Consensus 1253 ~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1253 ESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred CceEEEecccCCCceeeeecccC
Confidence 4444433 67999999986
No 47
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=60.07 E-value=1.5e+02 Score=35.66 Aligned_cols=163 Identities=20% Similarity=0.188 Sum_probs=92.4
Q ss_pred ceeEEeecccceEEEEccC----CceEEEEe--cCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEecCCCCCcc
Q 035748 179 SKYVAVGDDKGRVFVFLRN----GDVSVEFY--TMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWS 252 (655)
Q Consensus 179 skY~AVGD~~Grv~Vfs~~----GDvl~E~~--T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~ 252 (655)
.+|+|+|-..|+|-||--+ ++.+.-.. ....-.||| +++- +|.-=|..||.-|.|..|++-. +
T Consensus 88 e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTa-l~Ws---~~~~k~ysGD~~Gkv~~~~L~s-------~ 156 (726)
T KOG3621|consen 88 EYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTA-LEWS---KNGMKLYSGDSQGKVVLTELDS-------R 156 (726)
T ss_pred hHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEE-EEec---ccccEEeecCCCceEEEEEech-------h
Confidence 4689999999999999433 44333222 223567888 5553 7999999999999999999865 1
Q ss_pred hhhhhhccccc--cc-------------------------c--------CCCCCCceEEEEEeecC----ceeEEEEeeC
Q 035748 253 SLVIENVGKYV--AT-------------------------E--------NGEEGLSVTLLEVHHIG----RMRYILSADA 293 (655)
Q Consensus 253 sLs~e~~r~~~--~~-------------------------e--------~~~d~~pVt~LE~hrvG----r~RYVlsaDa 293 (655)
.+.+.++++.- ++ | +-.-..++.-=-.|-.| -..+|.+|+-
T Consensus 157 ~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRP 236 (726)
T KOG3621|consen 157 QAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTRCILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARP 236 (726)
T ss_pred hhhccccceeeccCcceEEeecccceehHhhhhhhheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecC
Confidence 33344333210 00 0 00111111100133344 4568899999
Q ss_pred CCcEEEEeeCCeEEEEEec---cCCCceEEEeeeeeeeeecCccccccccCcccccccCCCCcc
Q 035748 294 SGKIRVFKENGMVHGTAAM---LSSKPLVFLKQRLLFLTECGAGSLDLRTMKLRETECEGLNNS 354 (655)
Q Consensus 294 sGrV~VFrenGtl~G~aa~---~~SrplaFlkQrllfLTe~GaaslDLrtm~vr~~pCeGLN~S 354 (655)
++|+=.-.-.|+|+-+. . +..+|.+ --+++.-+++.-..+++..+=.+-..-|.-+++-
T Consensus 237 G~RlWead~~G~V~~Th-qfk~ala~~p~-p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~ 298 (726)
T KOG3621|consen 237 GLRLWEADFAGEVIKTH-QFKDALARPPA-PEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSD 298 (726)
T ss_pred CCceEEeecceeEEEee-ehhhhhccCCC-CcccCCCcCCccccCCCCCccccccceeEEeecc
Confidence 98765444459998776 1 1111111 0022222556666666666555555556655554
No 48
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=60.03 E-value=2.7e+02 Score=30.54 Aligned_cols=58 Identities=16% Similarity=0.031 Sum_probs=39.9
Q ss_pred eeEEeeccc-----ceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeee---------cCceEEEEEEE
Q 035748 180 KYVAVGDDK-----GRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGH---------ENGVILIHKVY 243 (655)
Q Consensus 180 kY~AVGD~~-----Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGH---------adG~V~~hrV~ 243 (655)
+++.|=|+. |+|+|++.+ +.++-.+.++- -|-- + +|.- +..+.|+-. .++.|.+..+.
T Consensus 13 ~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~-~P~~-~---~spD-g~~lyva~~~~~R~~~G~~~d~V~v~D~~ 85 (352)
T TIGR02658 13 RRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGF-LPNP-V---VASD-GSFFAHASTVYSRIARGKRTDYVEVIDPQ 85 (352)
T ss_pred CEEEEECCcccccCceEEEEECCCCEEEEEEEccC-CCce-e---ECCC-CCEEEEEeccccccccCCCCCEEEEEECc
Confidence 567888887 999999876 88888888874 4443 2 3342 444444444 78888887765
No 49
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=58.05 E-value=29 Score=35.69 Aligned_cols=55 Identities=20% Similarity=0.302 Sum_probs=39.0
Q ss_pred eeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEE
Q 035748 180 KYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIH 240 (655)
Q Consensus 180 kY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~h 240 (655)
.++.+|+..|.|++++++ |.++-...+.. .++++-- +.-+++ |+.+..||.|.+.
T Consensus 321 ~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~-~~~~~sp----~~~~~~-l~v~~~dG~l~~~ 376 (377)
T TIGR03300 321 GYLVVGDFEGYLHWLSREDGSFVARLKTDG-SGIASPP----VVVGDG-LLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEeCCCEEEEEECCCCCEEEEEEcCC-CccccCC----EEECCE-EEEEeCCceEEEe
Confidence 478899999999999886 99999888653 2443322 223566 5566779988654
No 50
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=57.50 E-value=80 Score=32.18 Aligned_cols=82 Identities=16% Similarity=0.217 Sum_probs=55.1
Q ss_pred cceeeeeeecCCccceeeeccCCCCCCcceeEEeecccceEEEE--ccCCceEEEEecCC-CCCeeEEEEeeeeecceeE
Q 035748 151 RFQFVSAVKLESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVF--LRNGDVSVEFYTMS-ELPVTAMVSYVSVYKNESV 227 (655)
Q Consensus 151 rF~fvSAvklda~aTal~vLP~r~~~glskY~AVGD~~Grv~Vf--s~~GDvl~E~~T~~-~spVTAm~SYlsvrRNeT~ 227 (655)
.+..++-.+....++++.+. -.|++|||....|+++ ..++.-+.++.... ...||++ .++ + ++..
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~--------~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~-~~l-~--d~~~ 186 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVF--------KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAA-EFL-V--DEDT 186 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEE--------TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEE-EEE----SSSE
T ss_pred cchhhheecceEEEEEEecc--------ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEE-EEe-c--CCcE
Confidence 45555555556667776666 2399999999999988 67788666666433 4456764 333 2 4448
Q ss_pred EEeeecCceEEEEEEEe
Q 035748 228 LVTGHENGVILIHKVYE 244 (655)
Q Consensus 228 lVTGHadG~V~~hrV~E 244 (655)
++.+-.+|.|.+.+.-+
T Consensus 187 ~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 187 IIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEEETTSEEEEEEE-S
T ss_pred EEEEcCCCeEEEEEECC
Confidence 88999999999998864
No 51
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=57.40 E-value=12 Score=42.90 Aligned_cols=111 Identities=23% Similarity=0.264 Sum_probs=68.5
Q ss_pred cccccceeeeeeeCccccccceeee--eeec---------------CCc-cceeeeccCCCCCCcceeEEeecccceEEE
Q 035748 132 DGERVRSVSVTKYSPFWSERFQFVS--AVKL---------------ESD-PTCINILPFRDYEGHSKYVAVGDDKGRVFV 193 (655)
Q Consensus 132 d~~~~~~~~VtKr~p~WSerF~fvS--Avkl---------------da~-aTal~vLP~r~~~glskY~AVGD~~Grv~V 193 (655)
-.-..+.+.+-.+.||-..-|-.+. -||+ ..+ +|+++-=|-| +--||++|..|.|++
T Consensus 394 ~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptr-----pavF~~~d~~G~l~i 468 (555)
T KOG1587|consen 394 FITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTR-----PAVFATVDGDGNLDI 468 (555)
T ss_pred ccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcC-----ceEEEEEcCCCceeh
Confidence 3345567788888887555443222 0111 111 6666666665 347899999999999
Q ss_pred EccCCc----eEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEe---cCCCCCcch
Q 035748 194 FLRNGD----VSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYE---KPNGEDWSS 253 (655)
Q Consensus 194 fs~~GD----vl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~E---s~~gdD~~s 253 (655)
++=.=+ ++-+-.. +++.-.+. .-.+-.+|+.|-++|.|.+.+|-| .|++++|.-
T Consensus 469 WDLl~~~~~Pv~s~~~~---~~~l~~~~---~s~~g~~lavGd~~G~~~~~~l~~~l~~~~~~e~~~ 529 (555)
T KOG1587|consen 469 WDLLQDDEEPVLSQKVC---SPALTRVR---WSPNGKLLAVGDANGTTHILKLSESLAVPSPNEKAL 529 (555)
T ss_pred hhhhccccCCccccccc---ccccceee---cCCCCcEEEEecCCCcEEEEEcCchhhccCcchHHH
Confidence 943311 1111001 23322222 223558999999999999999987 788888854
No 52
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=56.66 E-value=1.8e+02 Score=27.44 Aligned_cols=76 Identities=11% Similarity=0.215 Sum_probs=43.6
Q ss_pred eeecCCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCc
Q 035748 157 AVKLESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENG 235 (655)
Q Consensus 157 Avklda~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG 235 (655)
..+....+.++.+-| +|- .-|+++...|.|++++.. |.++.++.... .+ .. +++ +. .+..+++++..||
T Consensus 26 ~~~~~~~~~~l~~~~----dg~-~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~-~~-~~~-~~-~g~~l~~~~~~~~ 95 (300)
T TIGR03866 26 TFPVGQRPRGITLSK----DGK-LLYVCASDSDTIQVIDLATGEVIGTLPSGP-DP-EL-FAL-HP-NGKILYIANEDDN 95 (300)
T ss_pred EEECCCCCCceEECC----CCC-EEEEEECCCCeEEEEECCCCcEEEeccCCC-Cc-cE-EEE-CC-CCCEEEEEcCCCC
Confidence 334334455555544 221 234567778999999765 77766665432 23 32 333 22 2445667777889
Q ss_pred eEEEEEE
Q 035748 236 VILIHKV 242 (655)
Q Consensus 236 ~V~~hrV 242 (655)
.|.+..+
T Consensus 96 ~l~~~d~ 102 (300)
T TIGR03866 96 LVTVIDI 102 (300)
T ss_pred eEEEEEC
Confidence 8777655
No 53
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=56.56 E-value=14 Score=41.97 Aligned_cols=57 Identities=21% Similarity=0.326 Sum_probs=47.2
Q ss_pred ceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEE
Q 035748 179 SKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILI 239 (655)
Q Consensus 179 skY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~ 239 (655)
.+|++-||+.|+|++++=+ =.++.-+.+. +.|++. +.|+.+ -.+.|+|+.-||.|-+
T Consensus 444 G~~l~SGdsdG~v~~wdwkt~kl~~~lkah-~~~ci~-v~wHP~--e~Skvat~~w~G~Iki 501 (503)
T KOG0282|consen 444 GRTLCSGDSDGKVNFWDWKTTKLVSKLKAH-DQPCIG-VDWHPV--EPSKVATCGWDGLIKI 501 (503)
T ss_pred CCeEEeecCCccEEEeechhhhhhhccccC-CcceEE-EEecCC--CcceeEecccCceeEe
Confidence 4799999999999999766 6666666676 889999 677766 6899999999999853
No 54
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=55.86 E-value=1.1e+02 Score=33.19 Aligned_cols=118 Identities=23% Similarity=0.304 Sum_probs=67.8
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccCCc-eEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRNGD-VSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILI 239 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~GD-vl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~ 239 (655)
|+.|-+|-+-|-++. -.|.|--.=|+|=.+.+-+ -+.-+. +-.--||++.-. -.-.+..||..||+|.
T Consensus 40 dsqVNrLeiTpdk~~-----LAaa~~qhvRlyD~~S~np~Pv~t~e-~h~kNVtaVgF~----~dgrWMyTgseDgt~k- 108 (311)
T KOG0315|consen 40 DSQVNRLEITPDKKD-----LAAAGNQHVRLYDLNSNNPNPVATFE-GHTKNVTAVGFQ----CDGRWMYTGSEDGTVK- 108 (311)
T ss_pred ccceeeEEEcCCcch-----hhhccCCeeEEEEccCCCCCceeEEe-ccCCceEEEEEe----ecCeEEEecCCCceEE-
Confidence 677777777776542 2344555556655443333 222221 112234442221 2445789999999985
Q ss_pred EEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeCCeEE
Q 035748 240 HKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKENGMVH 307 (655)
Q Consensus 240 hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFrenGtl~ 307 (655)
||+-- ++... |.| .-.+||+.+..|- ----++++|-+|+|+||+-....+
T Consensus 109 --IWdlR------~~~~q--R~~------~~~spVn~vvlhp--nQteLis~dqsg~irvWDl~~~~c 158 (311)
T KOG0315|consen 109 --IWDLR------SLSCQ--RNY------QHNSPVNTVVLHP--NQTELISGDQSGNIRVWDLGENSC 158 (311)
T ss_pred --EEecc------Ccccc--hhc------cCCCCcceEEecC--CcceEEeecCCCcEEEEEccCCcc
Confidence 55510 13333 555 2347888876663 234689999999999998755543
No 55
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=54.39 E-value=25 Score=41.74 Aligned_cols=92 Identities=21% Similarity=0.284 Sum_probs=60.0
Q ss_pred ccceeeeeeecCCccceeeeccCCCCCCcceeEEeecccceEEEEccC--------CceEEEEecCCCCCeeEEEEeeee
Q 035748 150 ERFQFVSAVKLESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN--------GDVSVEFYTMSELPVTAMVSYVSV 221 (655)
Q Consensus 150 erF~fvSAvklda~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~--------GDvl~E~~T~~~spVTAm~SYlsv 221 (655)
+++..++++|++..|||+.++|.-.-+. .--+|||=++|.|++.+.. |.-..+....-.-+.+.++--+..
T Consensus 653 ~~i~~~a~~~~~~aVTAv~~~~~~~~e~-~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w 731 (764)
T KOG1063|consen 653 KYISRFACLKFSLAVTAVAYLPVDHNEK-GDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLW 731 (764)
T ss_pred hhhhhhchhccCCceeeEEeeccccccc-cceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEe
Confidence 3455669999999999999999855443 3468999999999999733 544444443222222222333333
Q ss_pred e----------cceeEEEeeecCceEEEEEE
Q 035748 222 Y----------KNESVLVTGHENGVILIHKV 242 (655)
Q Consensus 222 r----------RNeT~lVTGHadG~V~~hrV 242 (655)
| ++--.+..|..|-.+.+|++
T Consensus 732 ~p~~~~~~~~~~~~l~la~~g~D~~vri~nv 762 (764)
T KOG1063|consen 732 RPTCSDDWVEDKEWLNLAVGGDDESVRIFNV 762 (764)
T ss_pred ccccccccccccceeEEeeecccceeEEeec
Confidence 3 22235678888888888876
No 56
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=54.12 E-value=33 Score=38.10 Aligned_cols=138 Identities=17% Similarity=0.240 Sum_probs=84.6
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEc-cCCceEEEEe-------cCCCCCeeEEEEeeeeecceeEEEeee
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFL-RNGDVSVEFY-------TMSELPVTAMVSYVSVYKNESVLVTGH 232 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs-~~GDvl~E~~-------T~~~spVTAm~SYlsvrRNeT~lVTGH 232 (655)
-+++-|...-|- ..|++.|--.|-+-|.. -+|.+--++. -+-+.||.. ++ ..|..-.|.||.
T Consensus 213 KSh~EcA~FSPD------gqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlc-i~---FSRDsEMlAsGs 282 (508)
T KOG0275|consen 213 KSHVECARFSPD------GQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLC-IS---FSRDSEMLASGS 282 (508)
T ss_pred ccchhheeeCCC------CceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEE-Ee---ecccHHHhhccC
Confidence 355667666553 36999999999888884 3476544433 455778876 34 457888999999
Q ss_pred cCceEEEEEEEecC------------------CCCCcchhhhhhccccc---------cccCCCCCCceEEEEEeecCce
Q 035748 233 ENGVILIHKVYEKP------------------NGEDWSSLVIENVGKYV---------ATENGEEGLSVTLLEVHHIGRM 285 (655)
Q Consensus 233 adG~V~~hrV~Es~------------------~gdD~~sLs~e~~r~~~---------~~e~~~d~~pVt~LE~hrvGr~ 285 (655)
+||-|-+-||.-+- +.|..+-|+.-+.+.-. --|-.+-.+-|++ +----..
T Consensus 283 qDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~--a~ft~dG 360 (508)
T KOG0275|consen 283 QDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNE--ATFTDDG 360 (508)
T ss_pred cCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccc--eEEcCCC
Confidence 99999999998421 22222223322222110 0011234445555 2233455
Q ss_pred eEEEEeeCCCcEEEEeeC-CeEEEEE
Q 035748 286 RYILSADASGKIRVFKEN-GMVHGTA 310 (655)
Q Consensus 286 RYVlsaDasGrV~VFren-Gtl~G~a 310 (655)
.+|++|-.+|.|.||.-. +.-.-++
T Consensus 361 ~~iisaSsDgtvkvW~~KtteC~~Tf 386 (508)
T KOG0275|consen 361 HHIISASSDGTVKVWHGKTTECLSTF 386 (508)
T ss_pred CeEEEecCCccEEEecCcchhhhhhc
Confidence 689999999999999763 3334444
No 57
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=53.19 E-value=64 Score=38.48 Aligned_cols=71 Identities=23% Similarity=0.288 Sum_probs=54.1
Q ss_pred ecceeEEEeeecCceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEe
Q 035748 222 YKNESVLVTGHENGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFK 301 (655)
Q Consensus 222 rRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFr 301 (655)
--|+..++||.+|-.|.++.|.- ...||.|. +.-.||+.|-+=. -.||++++|.+|.|-+|+
T Consensus 544 HPNs~Y~aTGSsD~tVRlWDv~~-----------G~~VRiF~-----GH~~~V~al~~Sp--~Gr~LaSg~ed~~I~iWD 605 (707)
T KOG0263|consen 544 HPNSNYVATGSSDRTVRLWDVST-----------GNSVRIFT-----GHKGPVTALAFSP--CGRYLASGDEDGLIKIWD 605 (707)
T ss_pred CCcccccccCCCCceEEEEEcCC-----------CcEEEEec-----CCCCceEEEEEcC--CCceEeecccCCcEEEEE
Confidence 35999999999999997766544 22378882 2567899876655 678999999999999998
Q ss_pred e-CCeEEEEE
Q 035748 302 E-NGMVHGTA 310 (655)
Q Consensus 302 e-nGtl~G~a 310 (655)
= +|.+++..
T Consensus 606 l~~~~~v~~l 615 (707)
T KOG0263|consen 606 LANGSLVKQL 615 (707)
T ss_pred cCCCcchhhh
Confidence 6 45555544
No 58
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=53.07 E-value=5.2e+02 Score=31.82 Aligned_cols=223 Identities=20% Similarity=0.269 Sum_probs=128.6
Q ss_pred CccceeeeccCCCCCCcceeEEeecccceEEEEccCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecC-ceEEEE
Q 035748 162 SDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHEN-GVILIH 240 (655)
Q Consensus 162 a~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHad-G~V~~h 240 (655)
++|||...= --++-+|||=+.|-.+++---+-.++-.-..++.||++|.-- - ..+ +|.-|..- |.++
T Consensus 266 ~kvtaa~fH------~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N--~-tGD-WiA~g~~klgQLl-- 333 (893)
T KOG0291|consen 266 SKVTAAAFH------KGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFN--S-TGD-WIAFGCSKLGQLL-- 333 (893)
T ss_pred cceeeeecc------CCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEec--c-cCC-EEEEcCCccceEE--
Confidence 788887653 346789999999988777444444554446668999984321 1 233 55555443 5655
Q ss_pred EEEecCCCCCcc--hhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC-CeEEEEEeccCCC-
Q 035748 241 KVYEKPNGEDWS--SLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN-GMVHGTAAMLSSK- 316 (655)
Q Consensus 241 rV~Es~~gdD~~--sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren-Gtl~G~aa~~~Sr- 316 (655)
||| |- +-.|+--++| ..++.|+ | -....+|+.+-.+|||.||... |.-.-+|-..+|.
T Consensus 334 -Vwe------WqsEsYVlKQQgH~---------~~i~~l~-Y-SpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~V 395 (893)
T KOG0291|consen 334 -VWE------WQSESYVLKQQGHS---------DRITSLA-Y-SPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGV 395 (893)
T ss_pred -EEE------eeccceeeeccccc---------cceeeEE-E-CCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCce
Confidence 565 42 2333322223 3455533 2 2344567777779999999995 8889998555555
Q ss_pred -ceEEEe-ee-eeeeeecCcccc-ccccCcccccccCCCCcccceeeecccccccee--eeeccCCcEEEEEEecCcccc
Q 035748 317 -PLVFLK-QR-LLFLTECGAGSL-DLRTMKLRETECEGLNNSLVRNYVFDATERSKA--YGYTSEGDLIHVLLLGDVTNF 390 (655)
Q Consensus 317 -plaFlk-Qr-llfLTe~Gaasl-DLrtm~vr~~pCeGLN~S~i~syaFD~~~rsKa--YG~T~~G~Li~v~l~gD~~~~ 390 (655)
.|-|-+ |+ ++-..=-|...+ ||.- +-| -+ .|-.-++--+ .++.-.|+|+- .|+-.+|
T Consensus 396 t~v~f~~~g~~llssSLDGtVRAwDlkR-----YrN-------fR--Tft~P~p~QfscvavD~sGelV~---AG~~d~F 458 (893)
T KOG0291|consen 396 TAVQFTARGNVLLSSSLDGTVRAWDLKR-----YRN-------FR--TFTSPEPIQFSCVAVDPSGELVC---AGAQDSF 458 (893)
T ss_pred EEEEEEecCCEEEEeecCCeEEeeeecc-----cce-------ee--eecCCCceeeeEEEEcCCCCEEE---eeccceE
Confidence 444544 33 333333344333 4431 000 00 1111222222 23444488765 8999999
Q ss_pred ceEEeeecc---cc----CCcccce--eeeceeEEEEec--ceEEEEEeece
Q 035748 391 KCRVRSKRK---FD----MSEPLAF--QAIKGYLLVVCE--EKIFVYNVSAQ 431 (655)
Q Consensus 391 ~CrVRs~~k---~d----~~~pval--qaIKGYlLvas~--~~V~VyNvTsq 431 (655)
.-.||+... +| +|.||.= -.+-|=+|+..- .-|-.||+=.+
T Consensus 459 ~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 459 EIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred EEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeecc
Confidence 999999654 33 5778883 455566555433 45777887553
No 59
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.97 E-value=72 Score=35.75 Aligned_cols=85 Identities=21% Similarity=0.331 Sum_probs=46.8
Q ss_pred ccceeeeceeEEEEecceEEEEEeeceeeeccCCCccccccChHHHHHhhccccccccccccccccCCceEEecCCceEE
Q 035748 405 PLAFQAIKGYLLVVCEEKIFVYNVSAQHYVRSGGPRLLFSAGLDEIRSSFLNYQVMDVDVNDEKRRSVPLIASDRDKLLV 484 (655)
Q Consensus 405 pvalqaIKGYlLvas~~~V~VyNvTsq~y~Rv~~PR~Lfsa~L~~i~s~Fl~~~~~~~~~~~~~~a~~PLIASdRekLVV 484 (655)
-+++-+..|=++|+--.+.+ .-||++.. +..|=++|. |..+ .+..+|+-..++..++.
T Consensus 295 f~AlGT~dGsVai~~~~~lq-----~~~~vk~a--H~~~VT~lt-----F~Pd----------sr~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 295 FLALGTMDGSVAIYDAKSLQ-----RLQYVKEA--HLGFVTGLT-----FSPD----------SRYLASVSSDNEAAVTK 352 (398)
T ss_pred EEEEeccCCcEEEEEeceee-----eeEeehhh--heeeeeeEE-----EcCC----------cCcccccccCCceeEEE
Confidence 56666666655554333332 22466655 455555553 3332 33455655555666777
Q ss_pred EeeCCcEEEEEecCCCcccCCCCcccchhhHHHHHHHH
Q 035748 485 LGLGGGYVGMYRSNLPVFKGESSVMSWTGPVFFFILFL 522 (655)
Q Consensus 485 lglgdGyVa~YrS~LPv~kpe~nt~~W~~P~~~~im~L 522 (655)
+..+. .||.+.+| ..|..|+.++++|+
T Consensus 353 l~vd~---~~~~~~~~--------~~~~~~~~~~lL~~ 379 (398)
T KOG0771|consen 353 LAVDK---TMQLHRLP--------KRRKIPAWLALLFV 379 (398)
T ss_pred Eeecc---cccccccc--------cchhhhHHHHHHHH
Confidence 77653 46666666 56888886444443
No 60
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=52.57 E-value=1.6e+02 Score=30.61 Aligned_cols=87 Identities=15% Similarity=0.262 Sum_probs=56.7
Q ss_pred cccccee-eeeeec---CCccceeeeccCCCCCCcceeEEeecccceEEEEccCCceEEEEecCCCCCeeEEEEeeeeec
Q 035748 148 WSERFQF-VSAVKL---ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRNGDVSVEFYTMSELPVTAMVSYVSVYK 223 (655)
Q Consensus 148 WSerF~f-vSAvkl---da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~GDvl~E~~T~~~spVTAm~SYlsvrR 223 (655)
|-...|. +-|..| ..+++.|.+.|.++ ..|||.|+.+.||.++.+|+++-...=....=.-+ ++|+ .
T Consensus 4 ~~~~y~~~i~~~~l~g~~~e~SGLTy~pd~~-----tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~Eg-I~y~---g 74 (248)
T PF06977_consen 4 WLPDYRVVIEAKPLPGILDELSGLTYNPDTG-----TLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEG-ITYL---G 74 (248)
T ss_dssp --TT-EEEEEEEE-TT--S-EEEEEEETTTT-----EEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEE-EEE----S
T ss_pred ccCCcEEEEeeeECCCccCCccccEEcCCCC-----eEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCcee-EEEE---C
Confidence 4444444 334444 55689999999665 58999999999999999999987776332333344 6665 6
Q ss_pred ceeEEEeeecCceEEEEEEE
Q 035748 224 NESVLVTGHENGVILIHKVY 243 (655)
Q Consensus 224 NeT~lVTGHadG~V~~hrV~ 243 (655)
|..++++=-.++.+..+.+-
T Consensus 75 ~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 75 NGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp TTEEEEEETTTTEEEEEEE-
T ss_pred CCEEEEEEcCCCcEEEEEEe
Confidence 88899887778888888874
No 61
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=52.54 E-value=46 Score=38.65 Aligned_cols=73 Identities=21% Similarity=0.339 Sum_probs=52.3
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILI 239 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~ 239 (655)
-+++|++.+=|- -+|+|+||..++|.+++.+ ..+-.-.-+=-.+.|-+ +|+ + -|++.|+||.=|-.|.+
T Consensus 487 ~a~iT~vaySpd------~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~-~aW-s--P~n~~vATGSlDt~Vii 556 (603)
T KOG0318|consen 487 RAAITDVAYSPD------GAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINC-VAW-S--PNNKLVATGSLDTNVII 556 (603)
T ss_pred cCCceEEEECCC------CcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEE-EEe-C--CCceEEEeccccceEEE
Confidence 577888888774 3799999999999999888 44321111222345655 454 3 48899999999999987
Q ss_pred EEEE
Q 035748 240 HKVY 243 (655)
Q Consensus 240 hrV~ 243 (655)
..|-
T Consensus 557 ysv~ 560 (603)
T KOG0318|consen 557 YSVK 560 (603)
T ss_pred EEcc
Confidence 6654
No 62
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=52.08 E-value=25 Score=27.94 Aligned_cols=43 Identities=28% Similarity=0.502 Sum_probs=36.0
Q ss_pred ceeeeeeecCCccceeeeccCCCCCCcceeEEeecccceEEEEccCCce
Q 035748 152 FQFVSAVKLESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRNGDV 200 (655)
Q Consensus 152 F~fvSAvklda~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~GDv 200 (655)
|+.+..=.+.++|+++..=|.-| .+|+|.++|.|.+++-+|+-
T Consensus 2 f~~~~~k~l~~~v~~~~w~P~md------LiA~~t~~g~v~v~Rl~~qr 44 (47)
T PF12894_consen 2 FRQLGEKNLPSRVSCMSWCPTMD------LIALGTEDGEVLVYRLNWQR 44 (47)
T ss_pred cceecccCCCCcEEEEEECCCCC------EEEEEECCCeEEEEECCCcC
Confidence 66777778888999888888654 79999999999999888864
No 63
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=52.05 E-value=38 Score=40.99 Aligned_cols=61 Identities=25% Similarity=0.403 Sum_probs=50.7
Q ss_pred eeEEeecccceEEEE-ccCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEe
Q 035748 180 KYVAVGDDKGRVFVF-LRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYE 244 (655)
Q Consensus 180 kY~AVGD~~Grv~Vf-s~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~E 244 (655)
.-+|||-+.|.|++| -..+..+..|.-. ..+||+ +|+ .--.+.++++|..+|.+.+-.+-+
T Consensus 215 DVVaiG~~~G~ViifNlK~dkil~sFk~d-~g~Vts-lSF--rtDG~p~las~~~~G~m~~wDLe~ 276 (910)
T KOG1539|consen 215 DVVAIGLENGTVIIFNLKFDKILMSFKQD-WGRVTS-LSF--RTDGNPLLASGRSNGDMAFWDLEK 276 (910)
T ss_pred eEEEEeccCceEEEEEcccCcEEEEEEcc-ccceeE-EEe--ccCCCeeEEeccCCceEEEEEcCC
Confidence 358999999999999 5669999999977 789999 453 112789999999999999987765
No 64
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=51.42 E-value=30 Score=39.30 Aligned_cols=101 Identities=19% Similarity=0.175 Sum_probs=65.8
Q ss_pred ceeEEeecccceEEEEccCCceEEEEecC-CCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEecCCCCCcchhhhh
Q 035748 179 SKYVAVGDDKGRVFVFLRNGDVSVEFYTM-SELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWSSLVIE 257 (655)
Q Consensus 179 skY~AVGD~~Grv~Vfs~~GDvl~E~~T~-~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e 257 (655)
..|+|||-+.|.|++.+..=.--++.... -.+.|.+ ++ -|+.++.+|.-||.|..|.|+-..+--. .+.
T Consensus 229 G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~-la-----W~~~~lssGsr~~~I~~~dvR~~~~~~~----~~~ 298 (484)
T KOG0305|consen 229 GSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGS-LA-----WNSSVLSSGSRDGKILNHDVRISQHVVS----TLQ 298 (484)
T ss_pred CCEEEEeecCCeEEEEehhhccccccccCCcCceeEE-Ee-----ccCceEEEecCCCcEEEEEEecchhhhh----hhh
Confidence 57999999999999998663333333333 4555555 33 4799999999999999999985221110 011
Q ss_pred hccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee
Q 035748 258 NVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE 302 (655)
Q Consensus 258 ~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre 302 (655)
.-+ ..|.-|+. --..+|.++..-+.+|-||.-
T Consensus 299 ~H~-----------qeVCgLkw--s~d~~~lASGgnDN~~~Iwd~ 330 (484)
T KOG0305|consen 299 GHR-----------QEVCGLKW--SPDGNQLASGGNDNVVFIWDG 330 (484)
T ss_pred ccc-----------ceeeeeEE--CCCCCeeccCCCccceEeccC
Confidence 111 12333322 234578899999999999986
No 65
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=51.08 E-value=50 Score=39.76 Aligned_cols=75 Identities=21% Similarity=0.304 Sum_probs=56.0
Q ss_pred ecCCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceE
Q 035748 159 KLESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVI 237 (655)
Q Consensus 159 klda~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V 237 (655)
+.-+++||+..-|-- .-+|||=+.|.|.+|+-. ++.++-+. +-.+.||.| -.-+--+-|++|..||.|
T Consensus 63 ~~k~evt~l~~~~d~------l~lAVGYaDGsVqif~~~s~~~~~tfn-gHK~AVt~l----~fd~~G~rlaSGskDt~I 131 (888)
T KOG0306|consen 63 KKKAEVTCLRSSDDI------LLLAVGYADGSVQIFSLESEEILITFN-GHKAAVTTL----KFDKIGTRLASGSKDTDI 131 (888)
T ss_pred cccceEEEeeccCCc------ceEEEEecCceEEeeccCCCceeeeec-ccccceEEE----EEcccCceEeecCCCccE
Confidence 334799998764421 247999999999999655 66666553 346788873 334678889999999999
Q ss_pred EEEEEEe
Q 035748 238 LIHKVYE 244 (655)
Q Consensus 238 ~~hrV~E 244 (655)
.+..|+.
T Consensus 132 IvwDlV~ 138 (888)
T KOG0306|consen 132 IVWDLVG 138 (888)
T ss_pred EEEEecc
Confidence 9999885
No 66
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=50.98 E-value=18 Score=40.10 Aligned_cols=57 Identities=25% Similarity=0.253 Sum_probs=46.5
Q ss_pred CccceeeeccCCCCC-----CcceeEEeecccceEEEEccCCceEEEEecCCCCCeeEEEEee
Q 035748 162 SDPTCINILPFRDYE-----GHSKYVAVGDDKGRVFVFLRNGDVSVEFYTMSELPVTAMVSYV 219 (655)
Q Consensus 162 a~aTal~vLP~r~~~-----glskY~AVGD~~Grv~Vfs~~GDvl~E~~T~~~spVTAm~SYl 219 (655)
..+||+-.||..... --...+|||-+.|.|.+|+.+|++|..-.-. +.||..+-+..
T Consensus 57 e~ITsi~clpl~s~~~s~~~~dw~~I~VG~ssG~vrfyte~G~LL~~Q~~h-~~pV~~ik~~~ 118 (415)
T PF14655_consen 57 ECITSILCLPLSSQKRSTGGPDWTCIAVGTSSGYVRFYTENGVLLLSQLLH-EEPVLKIKCRS 118 (415)
T ss_pred CEEEEEEEEEeecccccCCCCCcEEEEEEecccEEEEEeccchHHHHHhcC-ccceEEEEecc
Confidence 479999999993322 3468999999999999999999988876665 89999976653
No 67
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=50.60 E-value=76 Score=38.28 Aligned_cols=46 Identities=22% Similarity=0.359 Sum_probs=33.8
Q ss_pred ceeEEEEeeCCCcEEEEeeCC--------eEEEEEeccCCCceEEEeeeeeeeee
Q 035748 284 RMRYILSADASGKIRVFKENG--------MVHGTAAMLSSKPLVFLKQRLLFLTE 330 (655)
Q Consensus 284 r~RYVlsaDasGrV~VFrenG--------tl~G~aa~~~SrplaFlkQrllfLTe 330 (655)
--||++++|.+|||.||+..| |+.+=- ..+..-|+|--+....|+-
T Consensus 216 n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH-~~~V~~L~fS~~G~~LlSG 269 (792)
T KOG1963|consen 216 NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWH-HDEVNSLSFSSDGAYLLSG 269 (792)
T ss_pred ccceEEEeccCCcEEEEeccccccccccceEEEec-ccccceeEEecCCceEeec
Confidence 347999999999999999987 343333 3566788888876655543
No 68
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=49.83 E-value=48 Score=37.51 Aligned_cols=125 Identities=20% Similarity=0.357 Sum_probs=83.6
Q ss_pred ccccccceeeeeeecCCccceeeeccCCCCCCcceeEEeecccceEEEEccCCceEEEEec---CCCCCeeEEEEeeeee
Q 035748 146 PFWSERFQFVSAVKLESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRNGDVSVEFYT---MSELPVTAMVSYVSVY 222 (655)
Q Consensus 146 p~WSerF~fvSAvklda~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~GDvl~E~~T---~~~spVTAm~SYlsvr 222 (655)
...-+.|.-+|+.|+.++|-.+.--|- .|=+.+|-+-|.+..-. | ..+-|.| .-++||++|. ..
T Consensus 81 ~~~~tKf~h~s~NKvkc~V~~v~WtPe------GRRLltgs~SGEFtLWN--g-~~fnFEtilQaHDs~Vr~m~----ws 147 (464)
T KOG0284|consen 81 SAFTTKFVHTSSNKVKCPVNVVRWTPE------GRRLLTGSQSGEFTLWN--G-TSFNFETILQAHDSPVRTMK----WS 147 (464)
T ss_pred cccccceEeccccccccceeeEEEcCC------CceeEeecccccEEEec--C-ceeeHHHHhhhhcccceeEE----Ec
Confidence 345677888999999999999888885 14478888888876653 3 3555553 3469999953 34
Q ss_pred cceeEEEeeecCceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEe
Q 035748 223 KNESVLVTGHENGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFK 301 (655)
Q Consensus 223 RNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFr 301 (655)
-|++++|+|.++|-| ++|+ ..|.|++.+-.... ..|+-|-+= .-... .++|-.+|.|.||.
T Consensus 148 ~~g~wmiSgD~gG~i---KyWq---------pnmnnVk~~~ahh~----eaIRdlafS-pnDsk-F~t~SdDg~ikiWd 208 (464)
T KOG0284|consen 148 HNGTWMISGDKGGMI---KYWQ---------PNMNNVKIIQAHHA----EAIRDLAFS-PNDSK-FLTCSDDGTIKIWD 208 (464)
T ss_pred cCCCEEEEcCCCceE---Eecc---------cchhhhHHhhHhhh----hhhheeccC-CCCce-eEEecCCCeEEEEe
Confidence 699999999999987 6777 77888876632220 112221111 12223 35566688998886
No 69
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.34 E-value=22 Score=41.99 Aligned_cols=50 Identities=28% Similarity=0.374 Sum_probs=43.5
Q ss_pred ccceEEEEccCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEE
Q 035748 187 DKGRVFVFLRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIH 240 (655)
Q Consensus 187 ~~Grv~Vfs~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~h 240 (655)
=.|+|++..=+-++++-..-.++.||+|..- + .||| ++|||.+|+.|++.
T Consensus 33 ynG~V~IWnyetqtmVksfeV~~~PvRa~kf-i-aRkn--Wiv~GsDD~~IrVf 82 (794)
T KOG0276|consen 33 YNGDVQIWNYETQTMVKSFEVSEVPVRAAKF-I-ARKN--WIVTGSDDMQIRVF 82 (794)
T ss_pred ecCeeEEEecccceeeeeeeecccchhhhee-e-eccc--eEEEecCCceEEEE
Confidence 3799999999999999999999999999543 3 7776 99999999999875
No 70
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=49.05 E-value=40 Score=37.59 Aligned_cols=59 Identities=19% Similarity=0.381 Sum_probs=47.7
Q ss_pred ceeEEeecccceEEEEc-cCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEE
Q 035748 179 SKYVAVGDDKGRVFVFL-RNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKV 242 (655)
Q Consensus 179 skY~AVGD~~Grv~Vfs-~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV 242 (655)
+.|++++-..|.|+.|. +.|+++-+ +|+-.-+|-.| .+..++.+|||+..|+.-++..+
T Consensus 338 t~~l~t~c~~g~v~~wDaRtG~l~~~-y~GH~~~Il~f----~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 338 TDYLLTACANGKVRQWDARTGQLKFT-YTGHQMGILDF----ALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred cchheeeccCceEEeeeccccceEEE-EecCchheeEE----EEcCCCcEEEEecCCCeEEEEec
Confidence 68999999999999995 55997665 45667788773 24479999999999999887654
No 71
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=48.95 E-value=47 Score=36.78 Aligned_cols=61 Identities=20% Similarity=0.331 Sum_probs=41.6
Q ss_pred ceeEEeecccceEEEEccCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEE
Q 035748 179 SKYVAVGDDKGRVFVFLRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVY 243 (655)
Q Consensus 179 skY~AVGD~~Grv~Vfs~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~ 243 (655)
.-|+|||=..|+|.+.+=.-.-+.-.-+.---|||+ +|+ .|...+|+|-..|-+|..-.|.
T Consensus 35 G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~s-l~W---S~dgr~LltsS~D~si~lwDl~ 95 (405)
T KOG1273|consen 35 GDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITS-LCW---SRDGRKLLTSSRDWSIKLWDLL 95 (405)
T ss_pred cceeeeeccCCcEEEEEccccchhhhhhccccceeE-EEe---cCCCCEeeeecCCceeEEEecc
Confidence 469999999999988743311122222333467887 555 3799999999999988765554
No 72
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=48.53 E-value=6 Score=38.05 Aligned_cols=31 Identities=13% Similarity=0.273 Sum_probs=0.0
Q ss_pred CCcccchhhHHHHHHHHHHhheeeeeccccc
Q 035748 506 SSVMSWTGPVFFFILFLFGVWHFFAKKKEAL 536 (655)
Q Consensus 506 ~nt~~W~~P~~~~im~Lvg~Wq~~rkKkd~l 536 (655)
+|-.+|..|++++++.++++|-+.||++...
T Consensus 100 ~~~~lW~~P~~~l~~g~~~~~~~~rr~~~~~ 130 (148)
T PF03918_consen 100 FTWLLWLGPFLLLLLGGALLFRRLRRWRRRA 130 (148)
T ss_dssp -------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 5889999999999999999998888876654
No 73
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=46.78 E-value=28 Score=24.27 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=25.1
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEc
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFL 195 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs 195 (655)
...++|+..-|. ..++|+|...|.|.+++
T Consensus 11 ~~~i~~i~~~~~------~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 11 SSSINSIAWSPD------GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SSSEEEEEEETT------SSEEEEEETTSEEEEEE
T ss_pred CCcEEEEEEecc------cccceeeCCCCEEEEEC
Confidence 467888888887 78999999999999874
No 74
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=46.56 E-value=6.1e+02 Score=32.10 Aligned_cols=187 Identities=19% Similarity=0.296 Sum_probs=105.3
Q ss_pred eeeeeeecCCccceeeeccCCCCCCcceeEEeecccceEEEEccC--CceE----EEEecCCCCCeeEEEEeeeeeccee
Q 035748 153 QFVSAVKLESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN--GDVS----VEFYTMSELPVTAMVSYVSVYKNES 226 (655)
Q Consensus 153 ~fvSAvklda~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~--GDvl----~E~~T~~~spVTAm~SYlsvrRNeT 226 (655)
.|+|-+-+-++-+-+..-+.-+.+|+- |-+||..|+||-+..+ |+-. ++..--.+.+|-+.+.|+ .+-
T Consensus 245 ~~~ai~p~~~~~~t~~~~~~v~~~~~~--yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L----~ng 318 (1096)
T KOG1897|consen 245 NFVAIAPLTAEQSTIVCYGRVDLQGSR--YLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYL----DNG 318 (1096)
T ss_pred ceeEecccccCCceEEEcccccCCccE--EEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcc----cCc
Confidence 344444444444444444555555543 7899999999988444 5432 344445567888888887 667
Q ss_pred EEEeeecCceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEE---eecCceeEEEE--eeCCCcEEEEe
Q 035748 227 VLVTGHENGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEV---HHIGRMRYILS--ADASGKIRVFK 301 (655)
Q Consensus 227 ~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~---hrvGr~RYVls--aDasGrV~VFr 301 (655)
+|+.|.-.|-=-+-++-+-|+. ......||+.--+ .||.-+-| .|.|....|.. ++-+|-+|++|
T Consensus 319 ~lFvGS~~gdSqLi~L~~e~d~-gsy~~ilet~~NL---------gPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiR 388 (1096)
T KOG1897|consen 319 VLFVGSRFGDSQLIKLNTEPDV-GSYVVILETFVNL---------GPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIR 388 (1096)
T ss_pred eEEEeccCCceeeEEccccCCC-Cchhhhhhhcccc---------cceeeEEEEeccccCCceEEEEeCCCCCCcEEEEe
Confidence 9999999887766666665555 3334455643333 14444333 33444443333 56678888888
Q ss_pred eCC--eEEEEEeccCCC-----------------ceEEEe-eeeeeeeecCccccccc-cCcccccccCCCCccc
Q 035748 302 ENG--MVHGTAAMLSSK-----------------PLVFLK-QRLLFLTECGAGSLDLR-TMKLRETECEGLNNSL 355 (655)
Q Consensus 302 enG--tl~G~aa~~~Sr-----------------plaFlk-QrllfLTe~GaaslDLr-tm~vr~~pCeGLN~S~ 355 (655)
..= +-+++.-.++-+ .|.|.- .|++.+++-+.-..|.- +=+.....|.+.+|-.
T Consensus 389 ngi~I~e~A~i~l~Gikg~w~lk~~v~~~~d~ylvlsf~~eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~ 463 (1096)
T KOG1897|consen 389 NGIGIDELASIDLPGIKGMWSLKSMVDENYDNYLVLSFISETRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQ 463 (1096)
T ss_pred cccccceeeEeecCCccceeEeeccccccCCcEEEEEeccceEEEEEccceEEeccccccccCceEEEEccCCce
Confidence 742 223333222211 122222 46666666644444433 3345666777776665
No 75
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=46.23 E-value=1.8e+02 Score=37.04 Aligned_cols=133 Identities=24% Similarity=0.292 Sum_probs=0.0
Q ss_pred ccceeeeccCCCCCC---cceeEEeecc---------cceEEEEccCCceEEEEecCCCCCeeEEEEeeeeecce---eE
Q 035748 163 DPTCINILPFRDYEG---HSKYVAVGDD---------KGRVFVFLRNGDVSVEFYTMSELPVTAMVSYVSVYKNE---SV 227 (655)
Q Consensus 163 ~aTal~vLP~r~~~g---lskY~AVGD~---------~Grv~Vfs~~GDvl~E~~T~~~spVTAm~SYlsvrRNe---T~ 227 (655)
.|+|+.++--+.+++ +.-|+|||.+ +||+|+|+ +.|+--..+.|-|=..--. +++-| +|
T Consensus 1027 ~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~d-----iIeVVPepgkP~t~~KlKe-l~~eE~KGtV 1100 (1366)
T KOG1896|consen 1027 HVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFD-----IIEVVPEPGKPFTKNKLKE-LYIEEQKGTV 1100 (1366)
T ss_pred eeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEE-----EEEecCCCCCCcccceeee-eehhhcccce
Q ss_pred EEeeecCce--------EEEEEE-Ee-cCCCCCcchh------------------hhhhcccccccc---------CCCC
Q 035748 228 LVTGHENGV--------ILIHKV-YE-KPNGEDWSSL------------------VIENVGKYVATE---------NGEE 270 (655)
Q Consensus 228 lVTGHadG~--------V~~hrV-~E-s~~gdD~~sL------------------s~e~~r~~~~~e---------~~~d 270 (655)
.+.-|-+|- |.+|++ ++ ...|-.+-.+ .|-+...+...| ++.+
T Consensus 1101 savceV~G~l~~~~GqKI~v~~l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~ 1180 (1366)
T KOG1896|consen 1101 SAVCEVRGHLLSSQGQKIIVRKLDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFE 1180 (1366)
T ss_pred EEEEEeccEEEEccCcEEEEEEeccCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCc
Q ss_pred CCceEEEEEeecCceeEEEEeeCCCcEEEEe
Q 035748 271 GLSVTLLEVHHIGRMRYILSADASGKIRVFK 301 (655)
Q Consensus 271 ~~pVt~LE~hrvGr~RYVlsaDasGrV~VFr 301 (655)
...|+.+|+.--|.-=|.+++|++|.|.||.
T Consensus 1181 ~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~ 1211 (1366)
T KOG1896|consen 1181 PLNVYSTEFLVDGSNLSFLVSDADRNIHVYM 1211 (1366)
T ss_pred hhhceeeeeEEcCCeeEEEEEcCCCcEEEEE
No 76
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=45.83 E-value=81 Score=35.58 Aligned_cols=81 Identities=23% Similarity=0.449 Sum_probs=60.5
Q ss_pred eeeecCCccceeeeccCCCCCCcceeEEeecccceEEEE-ccC---CceEEEEecCCCCCeeEEEEeeeeecceeEEEee
Q 035748 156 SAVKLESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVF-LRN---GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTG 231 (655)
Q Consensus 156 SAvklda~aTal~vLP~r~~~glskY~AVGD~~Grv~Vf-s~~---GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTG 231 (655)
+|+-+.+.=+=+||+-+.+.+. ++|-||+.|-+-|. .++ |..+++|.-- .+|||+ +-+ .+ -.+|++.++
T Consensus 294 ~~~~~kAh~sDVNVISWnr~~~---lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H-k~pIts-ieW-~p-~e~s~iaas 366 (440)
T KOG0302|consen 294 AAVSTKAHNSDVNVISWNRREP---LLASGGDDGTLSIWDLRQFKSGQPVATFKYH-KAPITS-IEW-HP-HEDSVIAAS 366 (440)
T ss_pred ceeEeeccCCceeeEEccCCcc---eeeecCCCceEEEEEhhhccCCCcceeEEec-cCCeeE-EEe-cc-ccCceEEec
Confidence 4555556666778888887776 89999999999998 444 7777776644 789999 443 24 368889999
Q ss_pred ecCceEEEEEEE
Q 035748 232 HENGVILIHKVY 243 (655)
Q Consensus 232 HadG~V~~hrV~ 243 (655)
.+|-.|.+-.+-
T Consensus 367 g~D~QitiWDls 378 (440)
T KOG0302|consen 367 GEDNQITIWDLS 378 (440)
T ss_pred cCCCcEEEEEee
Confidence 999999876654
No 77
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=44.71 E-value=2.7e+02 Score=26.09 Aligned_cols=57 Identities=23% Similarity=0.146 Sum_probs=37.5
Q ss_pred eeEEEEeeCCCcEEEEee-CCeEEEEEeccCCC---ceEEEeeeeeeeeecC-ccccccccCc
Q 035748 285 MRYILSADASGKIRVFKE-NGMVHGTAAMLSSK---PLVFLKQRLLFLTECG-AGSLDLRTMK 342 (655)
Q Consensus 285 ~RYVlsaDasGrV~VFre-nGtl~G~aa~~~Sr---plaFlkQrllfLTe~G-aaslDLrtm~ 342 (655)
..+|.+++.+|.|..+.. +|.+--.. ..... +.+....++++.++.| ..++|+.|=+
T Consensus 36 ~~~v~~~~~~~~l~~~d~~tG~~~W~~-~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~ 97 (238)
T PF13360_consen 36 GGRVYVASGDGNLYALDAKTGKVLWRF-DLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGK 97 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSEEEEEE-ECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEe-eccccccceeeecccccccccceeeeEecccCCcc
Confidence 345666789999999995 89987777 33322 2233446777777665 6677877644
No 78
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=44.63 E-value=72 Score=33.50 Aligned_cols=56 Identities=16% Similarity=0.223 Sum_probs=0.0
Q ss_pred eEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEE
Q 035748 181 YVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKV 242 (655)
Q Consensus 181 Y~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV 242 (655)
++.+||..|.||+++++ |.++-.+... ..++.+ ++---+--|+.+..||.|-+-++
T Consensus 337 ~l~v~~~~G~l~~ld~~tG~~~~~~~~~-~~~~~s-----~P~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 337 YLVVGDSEGYLHWINREDGRFVAQQKVD-SSGFLS-----EPVVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEEEEeCCCEEEEEECCCCCEEEEEEcC-CCccee-----CCEEECCEEEEEeCCceEEEEeC
No 79
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.28 E-value=16 Score=44.83 Aligned_cols=129 Identities=22% Similarity=0.336 Sum_probs=82.6
Q ss_pred eEEeecccceEEEEccCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEec---------CC----
Q 035748 181 YVAVGDDKGRVFVFLRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEK---------PN---- 247 (655)
Q Consensus 181 Y~AVGD~~Grv~Vfs~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es---------~~---- 247 (655)
-+|-|++.|.|++-+=+- .-.-+.-++..|..=+.++.-=|+++.+|.+|+.+|.+++-.|+.. +.
T Consensus 131 lLASGa~~geI~iWDlnn-~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~ 209 (1049)
T KOG0307|consen 131 LLASGADDGEILIWDLNK-PETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHC 209 (1049)
T ss_pred eeeccCCCCcEEEeccCC-cCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccce
Confidence 689999999999997665 2222222233344333443346899999999999999999888742 22
Q ss_pred -CCCcc-----hhhhh--hccc--cccccCCCCCCceEEEEEeecC---------ceeEEEEeeCCCcEEEEeeC-CeEE
Q 035748 248 -GEDWS-----SLVIE--NVGK--YVATENGEEGLSVTLLEVHHIG---------RMRYILSADASGKIRVFKEN-GMVH 307 (655)
Q Consensus 248 -gdD~~-----sLs~e--~~r~--~~~~e~~~d~~pVt~LE~hrvG---------r~RYVlsaDasGrV~VFren-Gtl~ 307 (655)
+-.|| .|.++ -.+. +---+-.-...|+-.||.|.-| .-+|+|+|--+++|-+|..| |.+-
T Consensus 210 S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl 289 (1049)
T KOG0307|consen 210 SVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVL 289 (1049)
T ss_pred eeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEe
Confidence 22233 12222 1111 0011122345677777777644 34899999999999999997 8888
Q ss_pred EEE
Q 035748 308 GTA 310 (655)
Q Consensus 308 G~a 310 (655)
|.+
T Consensus 290 ~~~ 292 (1049)
T KOG0307|consen 290 GEL 292 (1049)
T ss_pred eec
Confidence 877
No 80
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=42.49 E-value=1.5e+02 Score=31.39 Aligned_cols=77 Identities=13% Similarity=0.294 Sum_probs=51.0
Q ss_pred CCccceeeeccCCCCC-CcceeEEeecccceEEEEccCCceEEEEecCCCCCeeEEEEeeeeec-ceeEEEeeecCceEE
Q 035748 161 ESDPTCINILPFRDYE-GHSKYVAVGDDKGRVFVFLRNGDVSVEFYTMSELPVTAMVSYVSVYK-NESVLVTGHENGVIL 238 (655)
Q Consensus 161 da~aTal~vLP~r~~~-glskY~AVGD~~Grv~Vfs~~GDvl~E~~T~~~spVTAm~SYlsvrR-NeT~lVTGHadG~V~ 238 (655)
.+-+||+..|.-.-.| ...--.++|.|.|.|||+++++=.++.-..-...|| .|.++ -.+. -|--+|.---||.|-
T Consensus 176 ~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv-~i~~~-G~~devdyRI~Va~Rdg~iy 253 (257)
T PF14779_consen 176 QTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPV-FISVS-GQYDEVDYRIVVACRDGKIY 253 (257)
T ss_pred CceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCce-EEEEE-eeeeccceEEEEEeCCCEEE
Confidence 4568999999876655 355678899999999999999855444444446666 33333 3442 454555555666664
Q ss_pred E
Q 035748 239 I 239 (655)
Q Consensus 239 ~ 239 (655)
.
T Consensus 254 ~ 254 (257)
T PF14779_consen 254 T 254 (257)
T ss_pred E
Confidence 4
No 81
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=42.31 E-value=1.8e+02 Score=34.18 Aligned_cols=148 Identities=20% Similarity=0.286 Sum_probs=90.5
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEE--ccCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVF--LRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVIL 238 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vf--s~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~ 238 (655)
+++++|+.+-|- .-|+|||--.+.||++ +++|....-.---+.+|||.+=- | -+..+|++=.-|=.|+
T Consensus 447 ~~~ls~v~ysp~------G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDw--S--~Ds~~~~~~S~d~eiL 516 (626)
T KOG2106|consen 447 NEQLSVVRYSPD------GAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDW--S--SDSQFLVSNSGDYEIL 516 (626)
T ss_pred CCceEEEEEcCC------CCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeee--c--CCCceEEeccCceEEE
Confidence 566777666653 3589999999999998 88899888777555599999543 2 3788899988888888
Q ss_pred EEEEEecCCC-----CCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC-------CeE
Q 035748 239 IHKVYEKPNG-----EDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN-------GMV 306 (655)
Q Consensus 239 ~hrV~Es~~g-----dD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren-------Gtl 306 (655)
+-.=-+.+.+ -+|.+-.. .++..+. .+.++.-|-++- |.--...++++|..|+|++|+-. -+-
T Consensus 517 yW~~~~~~~~ts~kDvkW~t~~c-~lGF~v~--g~s~~t~i~a~~--rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he 591 (626)
T KOG2106|consen 517 YWKPSECKQITSVKDVKWATYTC-TLGFEVF--GGSDGTDINAVA--RSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHE 591 (626)
T ss_pred EEccccCcccceecceeeeeeEE-EEEEEEe--cccCCchHHHhh--hhhhhhhhhccccCceEEEEccccCCCccccee
Confidence 7632232211 12432100 0111111 144444443322 22233467889999999999863 222
Q ss_pred EEEEeccCCCceEEEeee
Q 035748 307 HGTAAMLSSKPLVFLKQR 324 (655)
Q Consensus 307 ~G~aa~~~SrplaFlkQr 324 (655)
||.- ..-..-|+|+-+-
T Consensus 592 ~~gh-s~~vt~V~Fl~~d 608 (626)
T KOG2106|consen 592 YGGH-SSHVTNVAFLCKD 608 (626)
T ss_pred eccc-cceeEEEEEeeCC
Confidence 4433 3334567887643
No 82
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=42.16 E-value=14 Score=36.54 Aligned_cols=35 Identities=14% Similarity=0.232 Sum_probs=25.4
Q ss_pred CCcccCCC---CcccchhhHHHHHHHHHHhheeeeecc
Q 035748 499 LPVFKGES---SVMSWTGPVFFFILFLFGVWHFFAKKK 533 (655)
Q Consensus 499 LPv~kpe~---nt~~W~~P~~~~im~Lvg~Wq~~rkKk 533 (655)
+=.+||++ +.-+|..|+++.++..+.+|-+.||+.
T Consensus 94 FVly~Pp~~~~T~lLW~~Pv~llllG~~~~~~~~rrr~ 131 (153)
T COG3088 94 FVLYKPPLTGQTLLLWGLPVVLLLLGGVLLVRRARRRV 131 (153)
T ss_pred eeeecCCCchhHHHHHHhHHHHHHHHHHHHHHHHhhhh
Confidence 44577864 667999999988777776666666653
No 83
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=42.09 E-value=65 Score=23.71 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=23.6
Q ss_pred EEeecccceEEEEccC-CceEEEEecCCC
Q 035748 182 VAVGDDKGRVFVFLRN-GDVSVEFYTMSE 209 (655)
Q Consensus 182 ~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~ 209 (655)
+.+|+..|.||.++++ |+++=++.+...
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~~~~~~ 31 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKFQTGPP 31 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEEESSSG
T ss_pred EEEeCCCCEEEEEECCCCCEEEeeeCCCC
Confidence 4456999999999877 999999997654
No 84
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=41.31 E-value=1.8e+02 Score=35.03 Aligned_cols=136 Identities=21% Similarity=0.269 Sum_probs=91.7
Q ss_pred cccccceeeee-----eec--------------CCccceeeeccCCCCCCcceeEEeecccceEEEEccCCceEEEEecC
Q 035748 147 FWSERFQFVSA-----VKL--------------ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRNGDVSVEFYTM 207 (655)
Q Consensus 147 ~WSerF~fvSA-----vkl--------------da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~GDvl~E~~T~ 207 (655)
-||.-=-++|| ||| .-.|||+..-|--| +||.-|==.|+|-+-+.-..-++ +.+.
T Consensus 376 SWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDD-----ryFiSGSLD~KvRiWsI~d~~Vv-~W~D 449 (712)
T KOG0283|consen 376 SWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDD-----RYFISGSLDGKVRLWSISDKKVV-DWND 449 (712)
T ss_pred ccccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCC-----CcEeecccccceEEeecCcCeeE-eehh
Confidence 37776666665 444 44689999888776 89999999999999987755333 3344
Q ss_pred CCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEecCCCCCcchhhhhhccccc-cccCCCCCCceEEEEEeecCcee
Q 035748 208 SELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWSSLVIENVGKYV-ATENGEEGLSVTLLEVHHIGRMR 286 (655)
Q Consensus 208 ~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~~r~~~-~~e~~~d~~pVt~LE~hrvGr~R 286 (655)
..-=||| ++|- -+--..|.|.=+|-+.|+-... |-.....+-. ...+-..+..||-|+.+..- .-
T Consensus 450 l~~lITA-vcy~---PdGk~avIGt~~G~C~fY~t~~---------lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~-~~ 515 (712)
T KOG0283|consen 450 LRDLITA-VCYS---PDGKGAVIGTFNGYCRFYDTEG---------LKLVSDFHIRLHNKKKKQGKRITGLQFFPGD-PD 515 (712)
T ss_pred hhhhhee-EEec---cCCceEEEEEeccEEEEEEccC---------CeEEEeeeEeeccCccccCceeeeeEecCCC-CC
Confidence 4567899 7874 3677888899999999987654 1111001100 01122345589999887543 33
Q ss_pred EEEEeeCCCcEEEEee
Q 035748 287 YILSADASGKIRVFKE 302 (655)
Q Consensus 287 YVlsaDasGrV~VFre 302 (655)
=||++-++-|||+|.-
T Consensus 516 ~vLVTSnDSrIRI~d~ 531 (712)
T KOG0283|consen 516 EVLVTSNDSRIRIYDG 531 (712)
T ss_pred eEEEecCCCceEEEec
Confidence 6888888899999974
No 85
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=40.02 E-value=1.2e+02 Score=36.73 Aligned_cols=146 Identities=16% Similarity=0.230 Sum_probs=94.0
Q ss_pred ceeEEeecccceEEEEccCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEecCC--CCCcchhhh
Q 035748 179 SKYVAVGDDKGRVFVFLRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPN--GEDWSSLVI 256 (655)
Q Consensus 179 skY~AVGD~~Grv~Vfs~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~--gdD~~sLs~ 256 (655)
.+|+.+|-..|.+.||+-+-..+||.--.-+..+-+|. +.-...=.|||.||-+|.|-.....-+ |-----|++
T Consensus 424 d~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~----~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl 499 (888)
T KOG0306|consen 424 DRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSIS----LSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSL 499 (888)
T ss_pred CceEEEeccCCceEEEEeehhhhhhhhhccccceeeee----ecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeee
Confidence 58999999999999998775557776544455555533 333455678999999999987766322 222122777
Q ss_pred hhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC-----CeEEEEEeccCCCceEEEe---eeeeee
Q 035748 257 ENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN-----GMVHGTAAMLSSKPLVFLK---QRLLFL 328 (655)
Q Consensus 257 e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren-----Gtl~G~aa~~~SrplaFlk---QrllfL 328 (655)
..-+.+ |-.++ |..++ --..++|++++=-+-.|.||=-| =+|||-. -||--+- -.-+.+
T Consensus 500 ~~~rtL---el~dd---vL~v~--~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHk-----LPV~smDIS~DSkliv 566 (888)
T KOG0306|consen 500 KHTRTL---ELEDD---VLCVS--VSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHK-----LPVLSMDISPDSKLIV 566 (888)
T ss_pred ccceEE---ecccc---EEEEE--EcCCCcEEEEEeccCeEEEEEecceeeeeeecccc-----cceeEEeccCCcCeEE
Confidence 766666 33333 33322 24678899999999999999876 4667766 5555553 233444
Q ss_pred eecCccccccccCccccc
Q 035748 329 TECGAGSLDLRTMKLRET 346 (655)
Q Consensus 329 Te~GaaslDLrtm~vr~~ 346 (655)
| +|+| +++++|-.
T Consensus 567 T----gSAD-KnVKiWGL 579 (888)
T KOG0306|consen 567 T----GSAD-KNVKIWGL 579 (888)
T ss_pred e----ccCC-CceEEecc
Confidence 4 3444 45666543
No 86
>PF06327 DUF1053: Domain of Unknown Function (DUF1053); InterPro: IPR009398 Cyclic AMP (cAMP) is a ubiquitous signalling molecule which mediates many cellular processes by activating cAMP-dependent kinases and also inducing protein-protein interactions. This molecule is produced by the adenylate cyclase (AC) enzyme, using ATP as its substrate. Mammalian adenylate cyclase has nine closely related membrane-bound isoforms (AC1-9) showing significant sequence homology and sharing the same overall structure: two hydrophobic transmembrane domains, and two cytoplasmic domains that are responsible for the catalytic activity. These isoforms differ in both their tissue specificity and their regulation. Regulatory factors known to influence one or more of these isoforms include G proteins, protein kinases, calcium and calmodulin. For more information see [, ]. This entry represents a region of unknown function found in many of these isoforms. It is part of the N-terminal cytoplasmic domain but its presence is not necessary for catalytic activity []. ; GO: 0004016 adenylate cyclase activity, 0009190 cyclic nucleotide biosynthetic process, 0016021 integral to membrane
Probab=38.93 E-value=13 Score=32.54 Aligned_cols=14 Identities=43% Similarity=1.075 Sum_probs=12.1
Q ss_pred ccccCCCCCCCCCc
Q 035748 534 EALTSWGPDDPFSS 547 (655)
Q Consensus 534 d~l~sw~p~~~f~~ 547 (655)
++|++||||-||.-
T Consensus 2 ~~l~~W~ae~PF~n 15 (101)
T PF06327_consen 2 RYLESWGAEKPFAN 15 (101)
T ss_pred CCCCCcCCcCCHhH
Confidence 57899999999954
No 87
>KOG4328 consensus WD40 protein [Function unknown]
Probab=38.39 E-value=1.1e+02 Score=35.24 Aligned_cols=145 Identities=20% Similarity=0.197 Sum_probs=0.0
Q ss_pred ccceeeeeeecCCccceeeeccCCCCCCcceeEEeecccceEEEEccCCceEEEEe----cCCCCCeeEEEEeeeeecce
Q 035748 150 ERFQFVSAVKLESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRNGDVSVEFY----TMSELPVTAMVSYVSVYKNE 225 (655)
Q Consensus 150 erF~fvSAvklda~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~GDvl~E~~----T~~~spVTAm~SYlsvrRNe 225 (655)
+.++.--|-=.+..+||+...|-+.- +-+||||-.|.|=+..=.++--.+-. |.-..||+.|.. +.- |+
T Consensus 175 ~~~~~~v~kv~~~Rit~l~fHPt~~~----~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F--~P~-n~ 247 (498)
T KOG4328|consen 175 DYRILNVAKVTDRRITSLAFHPTENR----KLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKF--SPA-NT 247 (498)
T ss_pred cceecceeEecccceEEEEecccCcc----eEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEe--cCC-Ch
Q ss_pred eEEEeeecCceEEEEEEEecC-------------------CCCCcchhhhhhccccccccCCCCCCceEEEEEee-----
Q 035748 226 SVLVTGHENGVILIHKVYEKP-------------------NGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHH----- 281 (655)
Q Consensus 226 T~lVTGHadG~V~~hrV~Es~-------------------~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hr----- 281 (655)
+=+.+-.-||+|..-.+.-.- +.|+..-|..-|++.|.--+..-+++.+.+|++|-
T Consensus 248 s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~s 327 (498)
T KOG4328|consen 248 SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITS 327 (498)
T ss_pred hheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccce
Q ss_pred ----cCceeEEEEeeCCCcEEEEe
Q 035748 282 ----IGRMRYILSADASGKIRVFK 301 (655)
Q Consensus 282 ----vGr~RYVlsaDasGrV~VFr 301 (655)
.-+--|++.|-.++-..+|+
T Consensus 328 v~~NP~~p~~laT~s~D~T~kIWD 351 (498)
T KOG4328|consen 328 VALNPVCPWFLATASLDQTAKIWD 351 (498)
T ss_pred eecCCCCchheeecccCcceeeee
No 88
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=37.92 E-value=63 Score=19.36 Aligned_cols=28 Identities=29% Similarity=0.476 Sum_probs=21.6
Q ss_pred CceEEEEEeecCceeEEEEeeCCCcEEEEe
Q 035748 272 LSVTLLEVHHIGRMRYILSADASGKIRVFK 301 (655)
Q Consensus 272 ~pVt~LE~hrvGr~RYVlsaDasGrV~VFr 301 (655)
..|..+-++.-+ ++++++..+|.|++|.
T Consensus 13 ~~i~~~~~~~~~--~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 13 GPVTSVAFSPDG--KYLASASDDGTIKLWD 40 (40)
T ss_pred CceeEEEECCCC--CEEEEecCCCeEEEcC
Confidence 467777776655 7889999999999874
No 89
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=37.16 E-value=2.9e+02 Score=35.51 Aligned_cols=278 Identities=19% Similarity=0.210 Sum_probs=137.5
Q ss_pred eCccccccceeeeeeecCCc-cceeeeccCCCCCCcceeEEeecccceEEEE-ccC--Cc---eEEEEe-cCCCCCeeEE
Q 035748 144 YSPFWSERFQFVSAVKLESD-PTCINILPFRDYEGHSKYVAVGDDKGRVFVF-LRN--GD---VSVEFY-TMSELPVTAM 215 (655)
Q Consensus 144 r~p~WSerF~fvSAvklda~-aTal~vLP~r~~~glskY~AVGD~~Grv~Vf-s~~--GD---vl~E~~-T~~~spVTAm 215 (655)
..+-|.=+=-+||=++.... ++-+.+.+ +-+-||+.|-+.|.|=|. ++. |+ .=+|.. ...+++|+.+
T Consensus 1030 p~~gW~p~G~lVAhL~Ehs~~v~k~a~s~-----~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~v 1104 (1431)
T KOG1240|consen 1030 PPPGWNPRGILVAHLHEHSSAVIKLAVSS-----EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKV 1104 (1431)
T ss_pred CCCCCCccceEeehhhhccccccceeecC-----CCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEE
Confidence 33446655556665655332 33333333 345799999999999887 222 54 223333 2257888875
Q ss_pred EEeeeeecceeEEEeeecCceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCcee-EEEEeeCC
Q 035748 216 VSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMR-YILSADAS 294 (655)
Q Consensus 216 ~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~R-YVlsaDas 294 (655)
.. +.-++++.|. ..||+|.+|||-.. ++. .....-+|+. ....+| .|++++.|-..-.. -|+.+--.
T Consensus 1105 t~---~~~~~~~Av~-t~DG~v~~~~id~~-~~~---~~~~~~~ri~---n~~~~g-~vv~m~a~~~~~~S~~lvy~T~~ 1172 (1431)
T KOG1240|consen 1105 TM---CGNGDQFAVS-TKDGSVRVLRIDHY-NVS---KRVATQVRIP---NLKKDG-VVVSMHAFTAIVQSHVLVYATDL 1172 (1431)
T ss_pred Ee---ccCCCeEEEE-cCCCeEEEEEcccc-ccc---cceeeeeecc---cccCCC-ceEEeecccccccceeEEEEEec
Confidence 54 4445666555 99999999999763 111 1222222222 122333 38887766666555 45555666
Q ss_pred CcEEEEee----------CCeEEEEEeccCCCceEEEe--eeeeeeeecCcccc-cccc------------CcccccccC
Q 035748 295 GKIRVFKE----------NGMVHGTAAMLSSKPLVFLK--QRLLFLTECGAGSL-DLRT------------MKLRETECE 349 (655)
Q Consensus 295 GrV~VFre----------nGtl~G~aa~~~SrplaFlk--QrllfLTe~Gaasl-DLrt------------m~vr~~pCe 349 (655)
|+|..|.. |--=||.+ .-++-=. +-++-=|++|.-.+ |||= ..+++-.|+
T Consensus 1173 ~~iv~~D~r~~~~~w~lk~~~~hG~v-----TSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~ 1247 (1431)
T KOG1240|consen 1173 SRIVSWDTRMRHDAWRLKNQLRHGLV-----TSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLC 1247 (1431)
T ss_pred cceEEecchhhhhHHhhhcCccccce-----eEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEee
Confidence 77777765 22335655 1122111 33333455565333 7771 112233333
Q ss_pred CCCc--ccceeeecc-ccccceeeeeccCCcEEEEEEec-CccccceEEeee--ccccC--CcccceeeeceeEEEE-ec
Q 035748 350 GLNN--SLVRNYVFD-ATERSKAYGYTSEGDLIHVLLLG-DVTNFKCRVRSK--RKFDM--SEPLAFQAIKGYLLVV-CE 420 (655)
Q Consensus 350 GLN~--S~i~syaFD-~~~rsKaYG~T~~G~Li~v~l~g-D~~~~~CrVRs~--~k~d~--~~pvalqaIKGYlLva-s~ 420 (655)
-+-. |-.++..+- -.|- --|++ +.|.=.++|-.+ +...+.-.+-+. +|.+. ..--.+..-+|.++.. |.
T Consensus 1248 ~~~~~~S~~vs~~~~~~nev-s~wn~-~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd 1325 (1431)
T KOG1240|consen 1248 PTYPQESVSVSAGSSSNNEV-STWNM-ETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSD 1325 (1431)
T ss_pred ccCCCCceEEEecccCCCce-eeeec-ccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCc
Confidence 3333 445554431 1111 11333 234555566655 333333322221 11000 0012223335566554 44
Q ss_pred ceEEEEEeeceeee--ccCCCcccccc
Q 035748 421 EKIFVYNVSAQHYV--RSGGPRLLFSA 445 (655)
Q Consensus 421 ~~V~VyNvTsq~y~--Rv~~PR~Lfsa 445 (655)
.||--|+-+..... ++-||+.-++.
T Consensus 1326 ~kIR~wD~~~p~~ss~~~~~~s~~~~~ 1352 (1431)
T KOG1240|consen 1326 MKIRKWDPTRPEISSYAVPGPSTSYST 1352 (1431)
T ss_pred cceeeccCCCcccccccccCccccccc
Confidence 77888887776543 44455554443
No 90
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=36.47 E-value=91 Score=34.69 Aligned_cols=66 Identities=21% Similarity=0.390 Sum_probs=50.0
Q ss_pred CCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEe
Q 035748 175 YEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYE 244 (655)
Q Consensus 175 ~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~E 244 (655)
++--.+|+.+|.+||.+.|.... =++++-+.-.+ |+++-+. -+.++-.++++-.+|-.|+...+.+
T Consensus 161 fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits---~~~IK~I-~~s~~g~~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 161 FDRRGKYIITGTSKGKLLVYDAETLECVASFRITS---VQAIKQI-IVSRKGRFLIINTSDRVIRTYEISD 227 (405)
T ss_pred ccCCCCEEEEecCcceEEEEecchheeeeeeeech---heeeeEE-EEeccCcEEEEecCCceEEEEehhh
Confidence 34456899999999999999777 44444444333 6776664 4778889999999999998887765
No 91
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=36.42 E-value=3.1e+02 Score=31.27 Aligned_cols=126 Identities=21% Similarity=0.280 Sum_probs=82.2
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEE-ccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVF-LRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVIL 238 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vf-s~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~ 238 (655)
++++-|+..=|+. .--+|.|.+.|+|.++ .|| -..+.-+ -+-+..|.- +.+ |+ -|||+|++...||.+-
T Consensus 272 ~~~vn~~~fnp~~-----~~ilAT~S~D~tV~LwDlRnL~~~lh~~-e~H~dev~~-V~W-SP-h~etvLASSg~D~rl~ 342 (422)
T KOG0264|consen 272 SAEVNCVAFNPFN-----EFILATGSADKTVALWDLRNLNKPLHTF-EGHEDEVFQ-VEW-SP-HNETVLASSGTDRRLN 342 (422)
T ss_pred CCceeEEEeCCCC-----CceEEeccCCCcEEEeechhcccCceec-cCCCcceEE-EEe-CC-CCCceeEecccCCcEE
Confidence 7889999999987 4568999999999999 444 2222111 122333443 554 56 5999999999999998
Q ss_pred EEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEee------------cCceeEEEEeeCCCcEEEEeeCCeE
Q 035748 239 IHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHH------------IGRMRYILSADASGKIRVFKENGMV 306 (655)
Q Consensus 239 ~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hr------------vGr~RYVlsaDasGrV~VFrenGtl 306 (655)
+-++-. -|++-+ ..+++..|.+.|=+|+ .-+-.-|+|+.-++-+.||+....+
T Consensus 343 vWDls~--ig~eq~-------------~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~i 407 (422)
T KOG0264|consen 343 VWDLSR--IGEEQS-------------PEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAENI 407 (422)
T ss_pred EEeccc--cccccC-------------hhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccccc
Confidence 766543 222211 1112222333333332 3344578889999999999999999
Q ss_pred EEEE
Q 035748 307 HGTA 310 (655)
Q Consensus 307 ~G~a 310 (655)
|+.-
T Consensus 408 ~~~e 411 (422)
T KOG0264|consen 408 YNPE 411 (422)
T ss_pred cCcc
Confidence 8765
No 92
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=35.78 E-value=2.7e+02 Score=34.86 Aligned_cols=112 Identities=18% Similarity=0.222 Sum_probs=83.2
Q ss_pred hhhccccccceeeeeeeCccccccceeeeeee---------------------cCCccceeeeccCCCCCCcceeEEee-
Q 035748 128 DMIRDGERVRSVSVTKYSPFWSERFQFVSAVK---------------------LESDPTCINILPFRDYEGHSKYVAVG- 185 (655)
Q Consensus 128 ~~~~d~~~~~~~~VtKr~p~WSerF~fvSAvk---------------------lda~aTal~vLP~r~~~glskY~AVG- 185 (655)
|++..|+.+++.++.|-.- ++-|-|=|.. +..++.||.+-|--++...|+++|||
T Consensus 479 ~~~~~W~~p~~~ti~~~~~---n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~ 555 (1096)
T KOG1897|consen 479 GLRSEWRPPGKITIGVVSA---NASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGL 555 (1096)
T ss_pred hhhhcccCCCceEEEEEee---cceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEe
Confidence 6778889999988877543 3445554443 46789999999999999999999999
Q ss_pred -cccceEEEEccCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEE
Q 035748 186 -DDKGRVFVFLRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVY 243 (655)
Q Consensus 186 -D~~Grv~Vfs~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~ 243 (655)
+..=.+-.++||+-+++-..++..+-=++++..- +.-.-..|..+..||++...-+-
T Consensus 556 Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~-~e~d~~yLlvalgdG~l~~fv~d 613 (1096)
T KOG1897|consen 556 WSDISMILTFLPDLILITHEQLSGEIIPRSILLTT-FEGDIHYLLVALGDGALLYFVLD 613 (1096)
T ss_pred ecceEEEEEECCCcceeeeeccCCCccchheeeEE-eeccceEEEEEcCCceEEEEEEE
Confidence 6666777889999999988777666556655432 43224567778899998776554
No 93
>KOG2727 consensus Rab3 GTPase-activating protein, non-catalytic subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.66 E-value=31 Score=42.37 Aligned_cols=70 Identities=27% Similarity=0.416 Sum_probs=49.1
Q ss_pred cccccceeee------------eeec--------CCccceeeeccCCC--CCCcc--eeEEeecccceEEEEccCCceEE
Q 035748 147 FWSERFQFVS------------AVKL--------ESDPTCINILPFRD--YEGHS--KYVAVGDDKGRVFVFLRNGDVSV 202 (655)
Q Consensus 147 ~WSerF~fvS------------Avkl--------da~aTal~vLP~r~--~~gls--kY~AVGD~~Grv~Vfs~~GDvl~ 202 (655)
+|.+||-|+. +|.. +..|||+-.+|..+ .+|.- --+|||...|-|++++.+|+++.
T Consensus 44 A~e~rfvfL~~~Wk~pd~p~~~~Vgw~g~l~dpe~e~ITa~~clpl~n~s~dgr~dwtcVavGt~sGyV~FYTe~Gvllf 123 (1244)
T KOG2727|consen 44 ALENRFVFLIVNWKDPDAPVYKRVGWRGDLSDPEAESITAIECLPLDNVSHDGRVDWTCVAVGTSSGYVLFYTETGVLLF 123 (1244)
T ss_pred HhhcceEEEEecCCCCCCCceEEEEeccccCCcccceeeeeeeeeccccccccccceeEEEEecccceEEEEecccHHHH
Confidence 5777777776 5543 44589999999983 34433 34999999999999999996543
Q ss_pred EEecCCCCCeeEEEE
Q 035748 203 EFYTMSELPVTAMVS 217 (655)
Q Consensus 203 E~~T~~~spVTAm~S 217 (655)
. .-.-..||-.+-.
T Consensus 124 ~-Q~~~edPVl~lk~ 137 (1244)
T KOG2727|consen 124 K-QIVHEDPVLKLKV 137 (1244)
T ss_pred H-HHhccCccceEEE
Confidence 2 2333677766443
No 94
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=34.99 E-value=5.5e+02 Score=28.59 Aligned_cols=61 Identities=15% Similarity=0.231 Sum_probs=47.0
Q ss_pred ceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEe
Q 035748 179 SKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYE 244 (655)
Q Consensus 179 skY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~E 244 (655)
+--|-+|+++ +|.+|+.. |...--|..- ..=|.+|- ..|||-.+|-||..||++.+|.++.
T Consensus 103 s~i~S~gtDk-~v~~wD~~tG~~~rk~k~h-~~~vNs~~---p~rrg~~lv~SgsdD~t~kl~D~R~ 164 (338)
T KOG0265|consen 103 SHILSCGTDK-TVRGWDAETGKRIRKHKGH-TSFVNSLD---PSRRGPQLVCSGSDDGTLKLWDIRK 164 (338)
T ss_pred CEEEEecCCc-eEEEEecccceeeehhccc-cceeeecC---ccccCCeEEEecCCCceEEEEeecc
Confidence 4567788887 78888766 9888777754 23344432 5789999999999999999999984
No 95
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=34.91 E-value=97 Score=36.62 Aligned_cols=136 Identities=18% Similarity=0.307 Sum_probs=79.4
Q ss_pred eeeeeeecCCccceeeeccCCCCCCcceeEEeecccceEEEEccC-----CceEEEEe------cCCCCCeeEEEEeeee
Q 035748 153 QFVSAVKLESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-----GDVSVEFY------TMSELPVTAMVSYVSV 221 (655)
Q Consensus 153 ~fvSAvklda~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-----GDvl~E~~------T~~~spVTAm~SYlsv 221 (655)
+|+.-.+++ ..|+++.--...+|| +|+|.+.|.|.++++- |-+-+... ......||| ++|
T Consensus 166 rfL~P~~~~--~~~lN~v~in~~hgL---la~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTa-l~F--- 236 (703)
T KOG2321|consen 166 RFLNPFETD--SGELNVVSINEEHGL---LACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTA-LKF--- 236 (703)
T ss_pred ccccccccc--cccceeeeecCccce---EEecccCceEEEecchhhhhheeeecccccCCCccccccCcceE-EEe---
Confidence 444444444 356777766667776 8999999999999654 55544444 111244777 443
Q ss_pred ecc-eeEEEeeecCceEEEEEEEe-cCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEE
Q 035748 222 YKN-ESVLVTGHENGVILIHKVYE-KPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRV 299 (655)
Q Consensus 222 rRN-eT~lVTGHadG~V~~hrV~E-s~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~V 299 (655)
+| ---+..|..+|.|++|.|+- .|.- +. + -.-..||..|-.-.-+.-.-|+++|.. -+++
T Consensus 237 -~d~gL~~aVGts~G~v~iyDLRa~~pl~-------~k--------d-h~~e~pi~~l~~~~~~~q~~v~S~Dk~-~~ki 298 (703)
T KOG2321|consen 237 -RDDGLHVAVGTSTGSVLIYDLRASKPLL-------VK--------D-HGYELPIKKLDWQDTDQQNKVVSMDKR-ILKI 298 (703)
T ss_pred -cCCceeEEeeccCCcEEEEEcccCCcee-------ec--------c-cCCccceeeecccccCCCceEEecchH-Hhhh
Confidence 46 55678899999999999996 3310 00 0 011233444333333333445666643 5667
Q ss_pred EeeC-CeEEEEEeccCCC
Q 035748 300 FKEN-GMVHGTAAMLSSK 316 (655)
Q Consensus 300 Fren-Gtl~G~aa~~~Sr 316 (655)
|.++ |.-+.+. .+++.
T Consensus 299 Wd~~~Gk~~asi-Ept~~ 315 (703)
T KOG2321|consen 299 WDECTGKPMASI-EPTSD 315 (703)
T ss_pred cccccCCceeec-cccCC
Confidence 7764 6655555 55544
No 96
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=34.70 E-value=1.4e+02 Score=33.37 Aligned_cols=118 Identities=17% Similarity=0.199 Sum_probs=76.4
Q ss_pred CCCCCCceEEEEEeec---------CceeEEEEeeCCCcEEEEeeCCeEEEEEeccCCCceEEEee--------------
Q 035748 267 NGEEGLSVTLLEVHHI---------GRMRYILSADASGKIRVFKENGMVHGTAAMLSSKPLVFLKQ-------------- 323 (655)
Q Consensus 267 ~~~d~~pVt~LE~hrv---------Gr~RYVlsaDasGrV~VFrenGtl~G~aa~~~SrplaFlkQ-------------- 323 (655)
..+.+-.||.++.--+ ..-..|++.=.+|.|++|+|+|.+--.- .-...||.=+|-
T Consensus 52 ~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG~ssG~vrfyte~G~LL~~Q-~~h~~pV~~ik~~~~~~~~~~~~~~e 130 (415)
T PF14655_consen 52 DDEPGECITSILCLPLSSQKRSTGGPDWTCIAVGTSSGYVRFYTENGVLLLSQ-LLHEEPVLKIKCRSTKIPRHPGDSSE 130 (415)
T ss_pred cCCCCCEEEEEEEEEeecccccCCCCCcEEEEEEecccEEEEEeccchHHHHH-hcCccceEEEEecccCCCCCCccccc
Confidence 3344467888877665 3356899999999999999999885544 333456665652
Q ss_pred eeeeeeecCccccccccCcccccccCCCCccccee---eeccccccceeeeeccCCcEEEEEEec
Q 035748 324 RLLFLTECGAGSLDLRTMKLRETECEGLNNSLVRN---YVFDATERSKAYGYTSEGDLIHVLLLG 385 (655)
Q Consensus 324 rllfLTe~GaaslDLrtm~vr~~pCeGLN~S~i~s---yaFD~~~rsKaYG~T~~G~Li~v~l~g 385 (655)
=|.-|=...+..+|--++..-...|-+..+.-... ..=-+.-..|-|+|.+.+.+......|
T Consensus 131 el~ily~~~v~~Idg~sL~~~L~~~~~~~~~~~~~~~~~~~~~~L~ykKw~l~~~~~i~D~~~~G 195 (415)
T PF14655_consen 131 ELSILYPSAVVIIDGFSLFSVLRACRNQVARGAASGSDSPAPPPLSYKKWNLQSQDTINDAAICG 195 (415)
T ss_pred EEEEEECCEEEEEecHHHHHHHHHHHHhhhhhhhcccccCCCCccceeEecCCCCCcEeeEEEec
Confidence 24445557777777777766666666532211110 111233456789999999998877766
No 97
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=34.42 E-value=17 Score=34.74 Aligned_cols=20 Identities=25% Similarity=0.795 Sum_probs=9.1
Q ss_pred CcccchhhHHHHHHHHHHhh
Q 035748 507 SVMSWTGPVFFFILFLFGVW 526 (655)
Q Consensus 507 nt~~W~~P~~~~im~Lvg~W 526 (655)
+--+|..|++++++.++.+|
T Consensus 101 t~~LW~~P~lll~~G~~~~~ 120 (126)
T TIGR03147 101 TLLLWLLPVLLLLLAFVLLW 120 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33445555554444443333
No 98
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=34.25 E-value=1.5e+02 Score=29.81 Aligned_cols=85 Identities=16% Similarity=0.282 Sum_probs=52.2
Q ss_pred CcccceeeeceeEEEEec-ceEEEEEeeceeeeccCCCcccccc-ChHHHHHhhccccccccccccccccCCceEEe--c
Q 035748 403 SEPLAFQAIKGYLLVVCE-EKIFVYNVSAQHYVRSGGPRLLFSA-GLDEIRSSFLNYQVMDVDVNDEKRRSVPLIAS--D 478 (655)
Q Consensus 403 ~~pvalqaIKGYlLvas~-~~V~VyNvTsq~y~Rv~~PR~Lfsa-~L~~i~s~Fl~~~~~~~~~~~~~~a~~PLIAS--d 478 (655)
.+++-|+.=+.||++.|. .-+.|||+.++ ..++.. +|..| +....... ....+.++.+ +
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~--------k~~~~~~Si~pl----l~~~~~~~-----~~~~~~i~~~~lt 75 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKKG--------KAVLPPVSIAPL----LNSSPVSD-----KSSSPNITSCSLT 75 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCCC--------eeccCCccHHHH----hccccccc-----CCCCCcEEEEEEc
Confidence 446778888999999998 66899999996 334444 66665 33221110 1223333222 1
Q ss_pred CCceEEEeeCCcEEEEEecCCCcccC
Q 035748 479 RDKLLVLGLGGGYVGMYRSNLPVFKG 504 (655)
Q Consensus 479 RekLVVlglgdGyVa~YrS~LPv~kp 504 (655)
.+..-|+.|-+|-.-+|..+|=.|-.
T Consensus 76 ~~G~PiV~lsng~~y~y~~~L~~W~~ 101 (219)
T PF07569_consen 76 SNGVPIVTLSNGDSYSYSPDLGCWIR 101 (219)
T ss_pred CCCCEEEEEeCCCEEEeccccceeEE
Confidence 22334456778888899999866653
No 99
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=33.63 E-value=1.6e+02 Score=33.12 Aligned_cols=103 Identities=19% Similarity=0.303 Sum_probs=65.5
Q ss_pred eEEeecccceEEEEc--cCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEecCCCCCcchhhhhh
Q 035748 181 YVAVGDDKGRVFVFL--RNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWSSLVIEN 258 (655)
Q Consensus 181 Y~AVGD~~Grv~Vfs--~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~ 258 (655)
|..|||-.|.|...+ +++=-++-..-+...+|++ +++- .+.-+|++|..|-.|++-.|--.+- ...|+
T Consensus 167 ~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~-l~Wd---~~~~~LfSg~~d~~vi~wdigg~~g------~~~el 236 (404)
T KOG1409|consen 167 YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTC-LKWD---PGQRLLFSGASDHSVIMWDIGGRKG------TAYEL 236 (404)
T ss_pred EEEecccccceEEEEEeecCCceEEEEcCcccceEE-EEEc---CCCcEEEeccccCceEEEeccCCcc------eeeee
Confidence 778999999998874 4444344444444566666 4443 6788999999999999887753110 01111
Q ss_pred ccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeCC
Q 035748 259 VGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKENG 304 (655)
Q Consensus 259 ~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFrenG 304 (655)
-+ -...|.. .-++--.++..|||.+|.|.+|.=|-
T Consensus 237 ~g---------h~~kV~~--l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 237 QG---------HNDKVQA--LSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred cc---------chhhhhh--hhhhhhheeeeeccCCCeEEEEeccc
Confidence 11 1111111 23344567899999999999998774
No 100
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=32.99 E-value=84 Score=34.24 Aligned_cols=52 Identities=23% Similarity=0.234 Sum_probs=34.1
Q ss_pred cceEEEEccC-------Cce-EEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEe
Q 035748 188 KGRVFVFLRN-------GDV-SVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYE 244 (655)
Q Consensus 188 ~Grv~Vfs~~-------GDv-l~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~E 244 (655)
.|-|.+|+-. ++- ..-..|.-..++.|+.+++ +| ++|+||.||+|....+.-
T Consensus 119 ~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l----~~-~ii~Ghe~G~is~~da~~ 178 (327)
T KOG0643|consen 119 TCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPL----GE-TIIAGHEDGSISIYDART 178 (327)
T ss_pred ceEEEEEEccCChhhhcccCceEEecCCccceeeeeeccc----CC-EEEEecCCCcEEEEEccc
Confidence 3678888433 221 4445566556666666653 44 578999999999988773
No 101
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=32.91 E-value=1.5e+02 Score=32.32 Aligned_cols=86 Identities=21% Similarity=0.457 Sum_probs=67.7
Q ss_pred cccc-ccceeeeeeecCCccceeeeccCCCCCCcceeEEeecccceEEEEccCCceEEEEe-cCCCCCeeEEEEeeeeec
Q 035748 146 PFWS-ERFQFVSAVKLESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRNGDVSVEFY-TMSELPVTAMVSYVSVYK 223 (655)
Q Consensus 146 p~WS-erF~fvSAvklda~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~GDvl~E~~-T~~~spVTAm~SYlsvrR 223 (655)
.||. ..|..+--.++-..|++.-.=|-. .+|+.|-+.+.+|.|+=+-+...+.+ -+--.||-+ +.| ++
T Consensus 208 ~Fwdaksf~~lKs~k~P~nV~SASL~P~k------~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhc-VrF-SP-- 277 (334)
T KOG0278|consen 208 KFWDAKSFGLLKSYKMPCNVESASLHPKK------EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHC-VRF-SP-- 277 (334)
T ss_pred EEeccccccceeeccCccccccccccCCC------ceEEecCcceEEEEEeccCCceeeecccCCCCceEE-EEE-CC--
Confidence 4674 689999999999999887766643 57889999999999998866677775 666689988 666 34
Q ss_pred ceeEEEeeecCceEEEEEEEe
Q 035748 224 NESVLVTGHENGVILIHKVYE 244 (655)
Q Consensus 224 NeT~lVTGHadG~V~~hrV~E 244 (655)
.--+-..|.+||+|+ ||.
T Consensus 278 dGE~yAsGSEDGTir---lWQ 295 (334)
T KOG0278|consen 278 DGELYASGSEDGTIR---LWQ 295 (334)
T ss_pred CCceeeccCCCceEE---EEE
Confidence 455778999999984 565
No 102
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=32.54 E-value=8.7e+02 Score=28.43 Aligned_cols=205 Identities=16% Similarity=0.230 Sum_probs=103.8
Q ss_pred cCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEe-----
Q 035748 206 TMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVH----- 280 (655)
Q Consensus 206 T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~h----- 280 (655)
+.+.++||+|--+ .+-.+|.|+..||.+.+..|-- .-=+.|...+..+| ||-.+++|
T Consensus 210 ~ps~~~I~sv~FH----p~~plllvaG~d~~lrifqvDG----k~N~~lqS~~l~~f----------Pi~~a~f~p~G~~ 271 (514)
T KOG2055|consen 210 HPSHGGITSVQFH----PTAPLLLVAGLDGTLRIFQVDG----KVNPKLQSIHLEKF----------PIQKAEFAPNGHS 271 (514)
T ss_pred CcCcCCceEEEec----CCCceEEEecCCCcEEEEEecC----ccChhheeeeeccC----------ccceeeecCCCce
Confidence 6677899995544 6889999999999999988743 21122333333333 33333333
Q ss_pred ---ecCceeEEEEeeC-CCcEEEEeeCCeEEEEEeccCCCceEE--EeeeeeeeeecCccccccccCcccccccCC-CCc
Q 035748 281 ---HIGRMRYILSADA-SGKIRVFKENGMVHGTAAMLSSKPLVF--LKQRLLFLTECGAGSLDLRTMKLRETECEG-LNN 353 (655)
Q Consensus 281 ---rvGr~RYVlsaDa-sGrV~VFrenGtl~G~aa~~~SrplaF--lkQrllfLTe~GaaslDLrtm~vr~~pCeG-LN~ 353 (655)
--||++|.-+.|- .++|.=+.. +||.= ..+-+.+.. .-+-+++-+- .|.+.|=+++..+.--.= +||
T Consensus 272 ~i~~s~rrky~ysyDle~ak~~k~~~---~~g~e-~~~~e~FeVShd~~fia~~G~--~G~I~lLhakT~eli~s~KieG 345 (514)
T KOG2055|consen 272 VIFTSGRRKYLYSYDLETAKVTKLKP---PYGVE-EKSMERFEVSHDSNFIAIAGN--NGHIHLLHAKTKELITSFKIEG 345 (514)
T ss_pred EEEecccceEEEEeeccccccccccC---CCCcc-cchhheeEecCCCCeEEEccc--CceEEeehhhhhhhhheeeecc
Confidence 3577888888885 344433333 23332 122111110 0122333333 334445555554432211 333
Q ss_pred ccceeeeccccccceeeeeccCCcEEEEEEecCccccceEEeeeccccCCccccee-eece-eEEEEecce-EEEEEeec
Q 035748 354 SLVRNYVFDATERSKAYGYTSEGDLIHVLLLGDVTNFKCRVRSKRKFDMSEPLAFQ-AIKG-YLLVVCEEK-IFVYNVSA 430 (655)
Q Consensus 354 S~i~syaFD~~~rsKaYG~T~~G~Li~v~l~gD~~~~~CrVRs~~k~d~~~pvalq-aIKG-YlLvas~~~-V~VyNvTs 430 (655)
.+....|+ +..-+.|...+.|++ ++| |...-+|.-|-.-.=.+ ...+++ +.-| |+-+-|... |-+|+-.+
T Consensus 346 -~v~~~~fs-Sdsk~l~~~~~~GeV-~v~---nl~~~~~~~rf~D~G~v-~gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 346 -VVSDFTFS-SDSKELLASGGTGEV-YVW---NLRQNSCLHRFVDDGSV-HGTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred -EEeeEEEe-cCCcEEEEEcCCceE-EEE---ecCCcceEEEEeecCcc-ceeeeeecCCCceEEeccCcceEEEeccch
Confidence 45667777 556778888888843 434 33334676554332111 122222 1112 554445443 34444222
Q ss_pred eeeecc-CCCccccc
Q 035748 431 QHYVRS-GGPRLLFS 444 (655)
Q Consensus 431 q~y~Rv-~~PR~Lfs 444 (655)
.+. +.|+|+++
T Consensus 419 ---~~~s~~PkPik~ 430 (514)
T KOG2055|consen 419 ---CFASTNPKPIKT 430 (514)
T ss_pred ---hhccCCCCchhh
Confidence 333 68999864
No 103
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=31.28 E-value=1.6e+02 Score=32.30 Aligned_cols=60 Identities=12% Similarity=0.324 Sum_probs=0.0
Q ss_pred eeEEeecccceEEEEccC-CceEEEEecCCCCC-eeEEEEeeeeecceeEEEeeecCceEEEEEE
Q 035748 180 KYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELP-VTAMVSYVSVYKNESVLVTGHENGVILIHKV 242 (655)
Q Consensus 180 kY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~sp-VTAm~SYlsvrRNeT~lVTGHadG~V~~hrV 242 (655)
||..+.+..+.+|++++= |.++.-+..-..+= ++...+|. -.-.+|++|..||.|.+..+
T Consensus 200 K~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ft---Pds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 200 KSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFT---PDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred CEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEEC---CCCcEEEEecCCCcEEEEEc
No 104
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.13 E-value=3e+02 Score=31.15 Aligned_cols=25 Identities=40% Similarity=0.610 Sum_probs=22.1
Q ss_pred eEEecCCceEEEeeCCcEEEEEecC
Q 035748 474 LIASDRDKLLVLGLGGGYVGMYRSN 498 (655)
Q Consensus 474 LIASdRekLVVlglgdGyVa~YrS~ 498 (655)
|=.|+-+|++.||=-+|-|+||++.
T Consensus 287 l~VS~dGkf~AlGT~dGsVai~~~~ 311 (398)
T KOG0771|consen 287 LAVSDDGKFLALGTMDGSVAIYDAK 311 (398)
T ss_pred EEEcCCCcEEEEeccCCcEEEEEec
Confidence 4468899999999999999999974
No 105
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=30.82 E-value=2.7e+02 Score=32.80 Aligned_cols=126 Identities=25% Similarity=0.354 Sum_probs=79.5
Q ss_pred ecCCccceeeeccCCCCCCcceeEEeecccceEEEE-------ccCCce--EEEEecCCCCCeeEEEEeeeeecceeEEE
Q 035748 159 KLESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVF-------LRNGDV--SVEFYTMSELPVTAMVSYVSVYKNESVLV 229 (655)
Q Consensus 159 klda~aTal~vLP~r~~~glskY~AVGD~~Grv~Vf-------s~~GDv--l~E~~T~~~spVTAm~SYlsvrRNeT~lV 229 (655)
-+.++.-|+.+|+|-.-++ -++.+++.|.|=+. +..+++ +.+|..- ..||-. ++| -.|.-.+.
T Consensus 289 tl~s~~d~ir~l~~~~sep---~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH-~gPVl~-v~v---~~n~~~~y 360 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEP---VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAH-EGPVLC-VVV---PSNGEHCY 360 (577)
T ss_pred eeecchhhhhhhhcCCCCC---eEEEeccccchhhhhhcccCCccccceeeeEEEecc-cCceEE-EEe---cCCceEEE
Confidence 4578889999999876554 57889999986532 233443 2333333 678865 443 36999999
Q ss_pred eeecCceEEEEEEEecCCCCCcch---hhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC
Q 035748 230 TGHENGVILIHKVYEKPNGEDWSS---LVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN 303 (655)
Q Consensus 230 TGHadG~V~~hrV~Es~~gdD~~s---Ls~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren 303 (655)
||..||.|.--.+- |++|+..+ .++. +.| .+-.| .|-.|+. +.-+- ++++|+++|.|+.|..-
T Consensus 361 sgg~Dg~I~~w~~p--~n~dp~ds~dp~vl~--~~l---~Ghtd--avw~l~~-s~~~~-~Llscs~DgTvr~w~~~ 426 (577)
T KOG0642|consen 361 SGGIDGTIRCWNLP--PNQDPDDSYDPSVLS--GTL---LGHTD--AVWLLAL-SSTKD-RLLSCSSDGTVRLWEPT 426 (577)
T ss_pred eeccCceeeeeccC--CCCCcccccCcchhc--cce---ecccc--ceeeeee-ccccc-ceeeecCCceEEeeccC
Confidence 99999999765555 66666432 1222 233 11122 2333333 33332 39999999999999873
No 106
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=30.68 E-value=87 Score=34.11 Aligned_cols=72 Identities=11% Similarity=0.208 Sum_probs=55.8
Q ss_pred eeeeccCCCCC-------CcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceE
Q 035748 166 CINILPFRDYE-------GHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVI 237 (655)
Q Consensus 166 al~vLP~r~~~-------glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V 237 (655)
+++.+|-.+-+ -+.+|+..|+++|.|=..+.- |..+++....-++-|+- |-..|..|..+||..|-.-
T Consensus 139 p~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind----~q~s~d~T~FiT~s~Dtta 214 (327)
T KOG0643|consen 139 PYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKIND----LQFSRDRTYFITGSKDTTA 214 (327)
T ss_pred ceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhcccccc----ccccCCcceEEecccCccc
Confidence 45556655533 278999999999999999655 99999998877777777 4556899999999999875
Q ss_pred EEEE
Q 035748 238 LIHK 241 (655)
Q Consensus 238 ~~hr 241 (655)
-+..
T Consensus 215 kl~D 218 (327)
T KOG0643|consen 215 KLVD 218 (327)
T ss_pred eeee
Confidence 4433
No 107
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=30.48 E-value=5.3e+02 Score=25.28 Aligned_cols=123 Identities=15% Similarity=0.190 Sum_probs=69.7
Q ss_pred CCceEEEe--eeeeeeeecCccccccccCccccc--cc---------CCCCcccceeeec--cccccceeeeeccCCcEE
Q 035748 315 SKPLVFLK--QRLLFLTECGAGSLDLRTMKLRET--EC---------EGLNNSLVRNYVF--DATERSKAYGYTSEGDLI 379 (655)
Q Consensus 315 SrplaFlk--QrllfLTe~GaaslDLrtm~vr~~--pC---------eGLN~S~i~syaF--D~~~rsKaYG~T~~G~Li 379 (655)
.+++..++ +.++.|+..-....||.++..... +| ..++.+.=+...- ......+.-.+..+- -|
T Consensus 38 I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk-~i 116 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK-KI 116 (275)
T ss_pred EEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECC-EE
Confidence 45666665 478889887778889998876652 22 2333222111111 111111111111111 33
Q ss_pred EEEEecCc-cccceEEeeeccccC-CcccceeeeceeEEEEecceEEEEEeeceeeeccCCCccccccCh
Q 035748 380 HVLLLGDV-TNFKCRVRSKRKFDM-SEPLAFQAIKGYLLVVCEEKIFVYNVSAQHYVRSGGPRLLFSAGL 447 (655)
Q Consensus 380 ~v~l~gD~-~~~~CrVRs~~k~d~-~~pvalqaIKGYlLvas~~~V~VyNvTsq~y~Rv~~PR~Lfsa~L 447 (655)
+++-.-+. ..|. ...+++.+ ++|.+++-...++.|++.+...++|.++. .+..|+..+-
T Consensus 117 ~i~~~~~~~~~f~---~~~ke~~lp~~~~~i~~~~~~i~v~~~~~f~~idl~~~------~~~~l~~~~~ 177 (275)
T PF00780_consen 117 LIYEWNDPRNSFS---KLLKEISLPDPPSSIAFLGNKICVGTSKGFYLIDLNTG------SPSELLDPSD 177 (275)
T ss_pred EEEEEECCccccc---ceeEEEEcCCCcEEEEEeCCEEEEEeCCceEEEecCCC------CceEEeCccC
Confidence 33333322 2232 23344555 77999999999999999999999999964 6677774443
No 108
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=29.40 E-value=1.1e+03 Score=28.84 Aligned_cols=186 Identities=15% Similarity=0.238 Sum_probs=100.5
Q ss_pred EeeeeecceeEEEeeecCceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCc
Q 035748 217 SYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGK 296 (655)
Q Consensus 217 SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGr 296 (655)
+|+ +-.++-+|++-|.++.+.+..+-. | .-+|.. +.---.||..++++-=| --++..+++|+
T Consensus 67 a~~-l~~d~~~L~~a~rs~llrv~~L~t---g--------k~irsw----Ka~He~Pvi~ma~~~~g--~LlAtggaD~~ 128 (775)
T KOG0319|consen 67 ALA-LTPDEEVLVTASRSQLLRVWSLPT---G--------KLIRSW----KAIHEAPVITMAFDPTG--TLLATGGADGR 128 (775)
T ss_pred eee-ecCCccEEEEeeccceEEEEEccc---c--------hHhHhH----hhccCCCeEEEEEcCCC--ceEEeccccce
Confidence 354 446788888888887664433322 2 112222 22234688888877666 78888999999
Q ss_pred EEEEee-CCeEEEEEeccCCCc---eEEEeeeeeeeeecCcccc-----ccccCcccccccCC---CCcccceeeecccc
Q 035748 297 IRVFKE-NGMVHGTAAMLSSKP---LVFLKQRLLFLTECGAGSL-----DLRTMKLRETECEG---LNNSLVRNYVFDAT 364 (655)
Q Consensus 297 V~VFre-nGtl~G~aa~~~Srp---laFlkQrllfLTe~Gaasl-----DLrtm~vr~~pCeG---LN~S~i~syaFD~~ 364 (655)
|.||.= |+..-+++ +..-.+ +.|=++-..+|=-+|+.-. |+++- .+|-. +--|.+.+.+|=.-
T Consensus 129 v~VWdi~~~~~th~f-kG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~----~tcl~~~~~H~S~vtsL~~~~d 203 (775)
T KOG0319|consen 129 VKVWDIKNGYCTHSF-KGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDK----RTCLHTMILHKSAVTSLAFSED 203 (775)
T ss_pred EEEEEeeCCEEEEEe-cCCCceEEEEEeCCccchhheeecCCCceEEEEEcccC----chHHHHHHhhhhheeeeeeccC
Confidence 999997 66667777 332233 3344554445555555443 44422 12554 24455666554333
Q ss_pred ccceeeeeccCCcEEEEEEecCccccceEEee-eccc-cCCcccceee----eceeEEEEecce-EEEEEeecee
Q 035748 365 ERSKAYGYTSEGDLIHVLLLGDVTNFKCRVRS-KRKF-DMSEPLAFQA----IKGYLLVVCEEK-IFVYNVSAQH 432 (655)
Q Consensus 365 ~rsKaYG~T~~G~Li~v~l~gD~~~~~CrVRs-~~k~-d~~~pvalqa----IKGYlLvas~~~-V~VyNvTsq~ 432 (655)
..=-.| -.+++++++|=. ..|+--. .... ++|..+.+.. =++|++.|..+. +..|-..+..
T Consensus 204 ~~~~ls--~~RDkvi~vwd~-----~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~ 271 (775)
T KOG0319|consen 204 SLELLS--VGRDKVIIVWDL-----VQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGK 271 (775)
T ss_pred CceEEE--eccCcEEEEeeh-----hhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccch
Confidence 222222 134555555543 2232111 0011 3455554433 157999888754 5556655554
No 109
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=29.19 E-value=1.2e+02 Score=30.52 Aligned_cols=33 Identities=27% Similarity=0.345 Sum_probs=26.0
Q ss_pred CCceEEEe---eeeeeeeecCcccc-ccccCcccccc
Q 035748 315 SKPLVFLK---QRLLFLTECGAGSL-DLRTMKLRETE 347 (655)
Q Consensus 315 SrplaFlk---QrllfLTe~Gaasl-DLrtm~vr~~p 347 (655)
.-|++||+ +.|+.||+.|--.. |+.+++.-..+
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~ 48 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPP 48 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCC
Confidence 34778886 57999999998887 99998865544
No 110
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=28.99 E-value=6.3e+02 Score=28.13 Aligned_cols=124 Identities=15% Similarity=0.266 Sum_probs=84.5
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEE-ccCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVF-LRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILI 239 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vf-s~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~ 239 (655)
..||-+|.+.|- -.+-|+-|-..+.-++. .++|. .++...+-++-|.+ ++|. .|---.+||.+||+...
T Consensus 186 ~gDV~slsl~p~-----~~ntFvSg~cD~~aklWD~R~~~-c~qtF~ghesDINs-v~ff---P~G~afatGSDD~tcRl 255 (343)
T KOG0286|consen 186 TGDVMSLSLSPS-----DGNTFVSGGCDKSAKLWDVRSGQ-CVQTFEGHESDINS-VRFF---PSGDAFATGSDDATCRL 255 (343)
T ss_pred cccEEEEecCCC-----CCCeEEecccccceeeeeccCcc-eeEeecccccccce-EEEc---cCCCeeeecCCCceeEE
Confidence 345555555554 24577788777777777 56675 56667777999999 6665 56777899999999999
Q ss_pred EEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee-CCeEEEEE
Q 035748 240 HKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE-NGMVHGTA 310 (655)
Q Consensus 240 hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre-nGtl~G~a 310 (655)
..|+- |. +| ..| ++.....+|+-+-+-.-| |++.++=.+..+.||+. -|...|+.
T Consensus 256 yDlRa----D~--~~-----a~y---s~~~~~~gitSv~FS~SG--RlLfagy~d~~c~vWDtlk~e~vg~L 311 (343)
T KOG0286|consen 256 YDLRA----DQ--EL-----AVY---SHDSIICGITSVAFSKSG--RLLFAGYDDFTCNVWDTLKGERVGVL 311 (343)
T ss_pred EeecC----Cc--EE-----eee---ccCcccCCceeEEEcccc--cEEEeeecCCceeEeeccccceEEEe
Confidence 99984 11 01 224 466677788887766655 47777777888888876 34334443
No 111
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=28.66 E-value=2.1e+02 Score=31.99 Aligned_cols=107 Identities=13% Similarity=0.156 Sum_probs=70.4
Q ss_pred ceeEEeecccceEEEEccCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEecCCCCCcchhhhhh
Q 035748 179 SKYVAVGDDKGRVFVFLRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWSSLVIEN 258 (655)
Q Consensus 179 skY~AVGD~~Grv~Vfs~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~ 258 (655)
.-|.|+|-.+|.++|+...-.-+.-..-+-+-.|..+--| + .+--+|+++..|-+|.+|-|.+. .-
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~--p-~~~qlvls~SkD~svRlwnI~~~-----------~C 170 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFH--P-DRPQLVLSASKDHSVRLWNIQTD-----------VC 170 (385)
T ss_pred CeeEEeecceeEEEEEecchhhhccceeccCccchhhhcC--C-CCCcEEEEecCCceEEEEeccCC-----------eE
Confidence 4578888899999999887333445555556667776655 3 35679999999999999988761 00
Q ss_pred ccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC
Q 035748 259 VGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN 303 (655)
Q Consensus 259 ~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren 303 (655)
+-.| +|.+|-.=+-|-+=-=++.+|++||--+=-|-+|+=|
T Consensus 171 v~Vf----GG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 171 VAVF----GGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLN 211 (385)
T ss_pred EEEe----cccccccCcEEEEEEcCCCCeeeccCCcceEEEEecC
Confidence 0112 2222222222223333555699999999999999876
No 112
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=28.49 E-value=5.6e+02 Score=28.83 Aligned_cols=88 Identities=25% Similarity=0.463 Sum_probs=63.3
Q ss_pred eeeeeCccccccceeeeeeecCCccceeeeccCCCCCCcceeEEeecccceEEEEccCCceEEEEecCCCCCeeEEEEee
Q 035748 140 SVTKYSPFWSERFQFVSAVKLESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRNGDVSVEFYTMSELPVTAMVSYV 219 (655)
Q Consensus 140 ~VtKr~p~WSerF~fvSAvklda~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~GDvl~E~~T~~~spVTAm~SYl 219 (655)
.-.|..|-|+ .-||-+|..+.+..+.. ..+--++.|.. .||+++.+|.+. +.-..+-+-++|..|-
T Consensus 225 ~~k~l~~dWs--------~nlGE~~l~i~v~~~~~--~~~~IvvLger--~Lf~l~~~G~l~--~~krLd~~p~~~~~Y~ 290 (418)
T PF14727_consen 225 SGKKLNPDWS--------FNLGEQALDIQVVRFSS--SESDIVVLGER--SLFCLKDNGSLR--FQKRLDYNPSCFCPYR 290 (418)
T ss_pred ccccccceeE--------EECCceeEEEEEEEcCC--CCceEEEEecc--eEEEEcCCCeEE--EEEecCCceeeEEEEE
Confidence 4456778886 45666777776666655 66777788865 699999999544 3444577778899998
Q ss_pred eeeccee----EEEeeecCceEEEEE
Q 035748 220 SVYKNES----VLVTGHENGVILIHK 241 (655)
Q Consensus 220 svrRNeT----~lVTGHadG~V~~hr 241 (655)
...+|+. .++.|..+|.+.+.+
T Consensus 291 ~~~~~~~~~~~~llV~t~t~~LlVy~ 316 (418)
T PF14727_consen 291 VPWYNEPSTRLNLLVGTHTGTLLVYE 316 (418)
T ss_pred eecccCCCCceEEEEEecCCeEEEEe
Confidence 7667774 366677788988876
No 113
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=28.34 E-value=36 Score=37.46 Aligned_cols=34 Identities=35% Similarity=0.492 Sum_probs=26.1
Q ss_pred eeeeceeEEEEecceEEEEEeeceeeeccCCCccccccChHHHHHhhccc
Q 035748 408 FQAIKGYLLVVCEEKIFVYNVSAQHYVRSGGPRLLFSAGLDEIRSSFLNY 457 (655)
Q Consensus 408 lqaIKGYlLvas~~~V~VyNvTsq~y~Rv~~PR~Lfsa~L~~i~s~Fl~~ 457 (655)
-++.||||||++.|. --.|.|+.+++|++.|-..
T Consensus 69 khglkg~LLva~GDg----------------ev~lvSq~reeLSa~f~v~ 102 (415)
T COG3919 69 KHGLKGYLLVACGDG----------------EVLLVSQYREELSAFFEVP 102 (415)
T ss_pred hcCcCceEEEecCCc----------------eeeehHhhHHHHHHHhcCC
Confidence 469999999999983 2456777888888777544
No 114
>PF13131 DUF3951: Protein of unknown function (DUF3951)
Probab=28.09 E-value=46 Score=28.03 Aligned_cols=30 Identities=33% Similarity=0.610 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHh--heeeeeccccccCCCCCC
Q 035748 514 PVFFFILFLFGV--WHFFAKKKEALTSWGPDD 543 (655)
Q Consensus 514 P~~~~im~Lvg~--Wq~~rkKkd~l~sw~p~~ 543 (655)
|+-++|.++||. +-.+.||+-.-+.+||=|
T Consensus 10 ~~~~~I~~lIgfity~mfV~K~s~q~~YTP~d 41 (53)
T PF13131_consen 10 LFTIFIFFLIGFITYKMFVKKASPQIYYTPFD 41 (53)
T ss_pred HHHHHHHHHHHHHHHHhheecCCCceeeccch
Confidence 566778888887 889999887777777533
No 115
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=27.81 E-value=3.9e+02 Score=31.15 Aligned_cols=188 Identities=17% Similarity=0.221 Sum_probs=106.6
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIH 240 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~h 240 (655)
..+||||.- ..=.-.+|+|-..|.+-+...+|.++.-+.-- ..||.+ +--+|..+.+++|..||++.+-
T Consensus 235 nkdVT~L~W------n~~G~~LatG~~~G~~riw~~~G~l~~tl~~H-kgPI~s----lKWnk~G~yilS~~vD~ttilw 303 (524)
T KOG0273|consen 235 NKDVTSLDW------NNDGTLLATGSEDGEARIWNKDGNLISTLGQH-KGPIFS----LKWNKKGTYILSGGVDGTTILW 303 (524)
T ss_pred cCCcceEEe------cCCCCeEEEeecCcEEEEEecCchhhhhhhcc-CCceEE----EEEcCCCCEEEeccCCccEEEE
Confidence 356677653 22235789999999999999999977665544 679998 3456889999999999999876
Q ss_pred EEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeCCe-EEEEEeccCCCceE
Q 035748 241 KVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKENGM-VHGTAAMLSSKPLV 319 (655)
Q Consensus 241 rV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFrenGt-l~G~aa~~~Srpla 319 (655)
.+.- -+--++|...+.+ .|.+==++-. =++.++.+|.|.|++-++. --+++ +.--.+|.
T Consensus 304 d~~~-----------g~~~q~f~~~s~~-------~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~P~~t~-~GH~g~V~ 363 (524)
T KOG0273|consen 304 DAHT-----------GTVKQQFEFHSAP-------ALDVDWQSND-EFATSSTDGCIHVCKVGEDRPVKTF-IGHHGEVN 363 (524)
T ss_pred eccC-----------ceEEEeeeeccCC-------ccceEEecCc-eEeecCCCceEEEEEecCCCcceee-ecccCceE
Confidence 5532 1111223111111 1111111221 2345777777777776521 12223 22234555
Q ss_pred EEe---eeeeeeeecCccccccccCc-----------------ccccccCC-----CCcccceeeeccccccceeeeecc
Q 035748 320 FLK---QRLLFLTECGAGSLDLRTMK-----------------LRETECEG-----LNNSLVRNYVFDATERSKAYGYTS 374 (655)
Q Consensus 320 Flk---QrllfLTe~GaaslDLrtm~-----------------vr~~pCeG-----LN~S~i~syaFD~~~rsKaYG~T~ 374 (655)
-+| +..|.+|.+==+-|-|=+|+ .+-+|-.. ..++.+.+++||-+- |+|-+ +
T Consensus 364 alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV--~lwdv-~ 440 (524)
T KOG0273|consen 364 ALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTV--KLWDV-E 440 (524)
T ss_pred EEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeE--EEEEc-c
Confidence 565 45666665544443333222 12222221 357788888888653 44544 4
Q ss_pred CCcEEEEE
Q 035748 375 EGDLIHVL 382 (655)
Q Consensus 375 ~G~Li~v~ 382 (655)
.|-.||.|
T Consensus 441 ~gv~i~~f 448 (524)
T KOG0273|consen 441 SGVPIHTL 448 (524)
T ss_pred CCceeEee
Confidence 56666654
No 116
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=27.38 E-value=2.3e+02 Score=27.56 Aligned_cols=83 Identities=17% Similarity=0.168 Sum_probs=45.3
Q ss_pred hccccccceeeeeeeCc--cccccc-eeeeeeecCCc---cceeeec---cCCC--CCCcc------eeEEeecccceEE
Q 035748 130 IRDGERVRSVSVTKYSP--FWSERF-QFVSAVKLESD---PTCINIL---PFRD--YEGHS------KYVAVGDDKGRVF 192 (655)
Q Consensus 130 ~~d~~~~~~~~VtKr~p--~WSerF-~fvSAvklda~---aTal~vL---P~r~--~~gls------kY~AVGD~~Grv~ 192 (655)
+.+-..+.|.++..-.. .++|-+ +.+-+..++.+ ++.-.++ +... .+|+. -|+|. =..|+|+
T Consensus 130 ~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~-~~~~~I~ 208 (246)
T PF08450_consen 130 ADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVAD-WGGGRIV 208 (246)
T ss_dssp EEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEE-ETTTEEE
T ss_pred ecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEE-cCCCEEE
Confidence 34555677888876544 234433 23555555432 3332322 2221 22321 23332 2678999
Q ss_pred EEccCCceEEEEecCCCCCeeE
Q 035748 193 VFLRNGDVSVEFYTMSELPVTA 214 (655)
Q Consensus 193 Vfs~~GDvl~E~~T~~~spVTA 214 (655)
+|+++|.++.+...... .+|.
T Consensus 209 ~~~p~G~~~~~i~~p~~-~~t~ 229 (246)
T PF08450_consen 209 VFDPDGKLLREIELPVP-RPTN 229 (246)
T ss_dssp EEETTSCEEEEEE-SSS-SEEE
T ss_pred EECCCccEEEEEcCCCC-CEEE
Confidence 99999999988888744 5555
No 117
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=27.29 E-value=2.9e+02 Score=32.16 Aligned_cols=106 Identities=16% Similarity=0.196 Sum_probs=66.9
Q ss_pred EEeecccceEEEEccCCceEEE--------EecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEe-cCCCCCcc
Q 035748 182 VAVGDDKGRVFVFLRNGDVSVE--------FYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYE-KPNGEDWS 252 (655)
Q Consensus 182 ~AVGD~~Grv~Vfs~~GDvl~E--------~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~E-s~~gdD~~ 252 (655)
|.||.+-|.||.=++.|--..+ ++..-..||+++-. +++-..-|+.+| |..| |||. .+ +..+
T Consensus 363 FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~--nPF~~k~fls~g--DW~v---riWs~~~--~~~P 433 (555)
T KOG1587|consen 363 FIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSR--NPFYPKNFLSVG--DWTV---RIWSEDV--IASP 433 (555)
T ss_pred EEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeec--CCCccceeeeec--ccee---EeccccC--CCCc
Confidence 9999999999997666443333 34555789999555 577667777777 6655 3443 11 1222
Q ss_pred hhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeCCeEEE
Q 035748 253 SLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKENGMVHG 308 (655)
Q Consensus 253 sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFrenGtl~G 308 (655)
.+..+ .....|+. .+.-..|--..++.|.+|.|.+|+=+-..++
T Consensus 434 l~~~~-----------~~~~~v~~-vaWSptrpavF~~~d~~G~l~iWDLl~~~~~ 477 (555)
T KOG1587|consen 434 LLSLD-----------SSPDYVTD-VAWSPTRPAVFATVDGDGNLDIWDLLQDDEE 477 (555)
T ss_pred chhhh-----------hccceeee-eEEcCcCceEEEEEcCCCceehhhhhccccC
Confidence 22222 11122333 4666777778899999999999986544443
No 118
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=27.27 E-value=86 Score=37.89 Aligned_cols=71 Identities=28% Similarity=0.565 Sum_probs=48.7
Q ss_pred ccceeeeccCCCCCCcceeEEeecccceEEEEccCC-ceEEEEecCC---CCCeeEEEEeeeeecceeEEEeeecCceEE
Q 035748 163 DPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRNG-DVSVEFYTMS---ELPVTAMVSYVSVYKNESVLVTGHENGVIL 238 (655)
Q Consensus 163 ~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~G-Dvl~E~~T~~---~spVTAm~SYlsvrRNeT~lVTGHadG~V~ 238 (655)
..||.+.=|- .+|+|+||+.|||+|-+.-| +-.-+..|-- ..+|+.+ ++ | -+-.-|.+|.+.|..+
T Consensus 207 ~~t~~~~spn------~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L-~f-S--~~G~~LlSGG~E~VLv 276 (792)
T KOG1963|consen 207 NITCVALSPN------ERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSL-SF-S--SDGAYLLSGGREGVLV 276 (792)
T ss_pred cceeEEeccc------cceEEEeccCCcEEEEeccccccccccceEEEeccccccee-EE-e--cCCceEeecccceEEE
Confidence 3566655554 47999999999999998888 2222222211 2578874 33 2 3777888999999998
Q ss_pred EEEEE
Q 035748 239 IHKVY 243 (655)
Q Consensus 239 ~hrV~ 243 (655)
.|++.
T Consensus 277 ~Wq~~ 281 (792)
T KOG1963|consen 277 LWQLE 281 (792)
T ss_pred EEeec
Confidence 88875
No 119
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=27.21 E-value=5.1e+02 Score=29.99 Aligned_cols=108 Identities=19% Similarity=0.223 Sum_probs=66.0
Q ss_pred cccceEEEEccCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEe-cCCCCCcch--hhhhhcccc
Q 035748 186 DDKGRVFVFLRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYE-KPNGEDWSS--LVIENVGKY 262 (655)
Q Consensus 186 D~~Grv~Vfs~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~E-s~~gdD~~s--Ls~e~~r~~ 262 (655)
|.--+||=.|. |-+|+-+ ...++++||+ +-.-||++..|..+|-|..--+.- ++...+... -..+|.+ +
T Consensus 197 D~t~k~wdlS~-g~LLlti--~fp~si~av~----lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~-~ 268 (476)
T KOG0646|consen 197 DRTIKLWDLSL-GVLLLTI--TFPSSIKAVA----LDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQ-I 268 (476)
T ss_pred CceEEEEEecc-ceeeEEE--ecCCcceeEE----EcccccEEEecCCcceEEeeehhcCCcccccccccccccccce-e
Confidence 44444544432 3333332 2356777743 446899999999999998877665 333333220 0011111 1
Q ss_pred ccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC
Q 035748 263 VATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN 303 (655)
Q Consensus 263 ~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren 303 (655)
....+...+++||.|++-- ..--+++.|.+|+|.||...
T Consensus 269 ~~~~Gh~~~~~ITcLais~--DgtlLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 269 NVLVGHENESAITCLAIST--DGTLLLSGDEDGKVCVWDIY 307 (476)
T ss_pred eeeccccCCcceeEEEEec--CccEEEeeCCCCCEEEEecc
Confidence 1223455559999998764 34579999999999999985
No 120
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=27.13 E-value=61 Score=29.04 Aligned_cols=29 Identities=34% Similarity=0.453 Sum_probs=22.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhccC
Q 035748 55 GQQDLLLHKLEELVRNLSDIVTKLESKFS 83 (655)
Q Consensus 55 ~~~~~~l~~leel~~~l~~~v~~le~~l~ 83 (655)
.+-+.++.+||++|.-|-+...+||+|+-
T Consensus 69 d~Ie~~V~~LE~~v~~LD~ysk~LE~k~k 97 (99)
T PF10046_consen 69 DQIEEQVTELEQTVYELDEYSKELESKFK 97 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33455778888888888888999998863
No 121
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=26.65 E-value=95 Score=35.48 Aligned_cols=58 Identities=21% Similarity=0.434 Sum_probs=45.3
Q ss_pred cceeEEeecccceEEEE-ccCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEE
Q 035748 178 HSKYVAVGDDKGRVFVF-LRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILI 239 (655)
Q Consensus 178 lskY~AVGD~~Grv~Vf-s~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~ 239 (655)
-.+|+|-|-+.++||+. ...|.+++++..-+ --|. ++||- + .|-..++++.+||+|.+
T Consensus 451 ~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs-~~vN-cVswN-P-~~p~m~ASasDDgtIRI 509 (519)
T KOG0293|consen 451 NDKFIASGSEDSKVYIWHRISGKLLAVLSGHS-KTVN-CVSWN-P-ADPEMFASASDDGTIRI 509 (519)
T ss_pred CcceEEecCCCceEEEEEccCCceeEeecCCc-ceee-EEecC-C-CCHHHhhccCCCCeEEE
Confidence 45899999999999999 55599999987442 2233 47774 4 48889999999999954
No 122
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=26.09 E-value=1.7e+02 Score=26.60 Aligned_cols=34 Identities=24% Similarity=0.452 Sum_probs=26.2
Q ss_pred cCceeEEEEeeCCCcEEEEeeCCeEEEEEeccCCC
Q 035748 282 IGRMRYILSADASGKIRVFKENGMVHGTAAMLSSK 316 (655)
Q Consensus 282 vGr~RYVlsaDasGrV~VFrenGtl~G~aa~~~Sr 316 (655)
.|--.+-++||-.|-+.-+..||.+||++ +..|.
T Consensus 14 ~~~tS~~Vs~~~~gs~ValS~dg~l~G~a-i~~sG 47 (81)
T PF03785_consen 14 LGQTSISVSCDVPGSYVALSQDGDLYGKA-IVNSG 47 (81)
T ss_dssp TT-SEEEEEESSTT-EEEEEETTEEEEEE-E-BTT
T ss_pred ccccEEEEEecCCCcEEEEecCCEEEEEE-EecCc
Confidence 45556889999999999999999999999 66544
No 123
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=25.83 E-value=97 Score=34.94 Aligned_cols=33 Identities=33% Similarity=0.273 Sum_probs=25.8
Q ss_pred EEeecccceEEEEccC-CceEEEEecCC---CCCeeE
Q 035748 182 VAVGDDKGRVFVFLRN-GDVSVEFYTMS---ELPVTA 214 (655)
Q Consensus 182 ~AVGD~~Grv~Vfs~~-GDvl~E~~T~~---~spVTA 214 (655)
+.+||..|.+++|+++ |++|-++.+++ ++|||.
T Consensus 475 vf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty 511 (527)
T TIGR03075 475 VFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTY 511 (527)
T ss_pred EEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEE
Confidence 4459999999999777 99999999763 355553
No 124
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=25.67 E-value=97 Score=36.84 Aligned_cols=59 Identities=17% Similarity=0.143 Sum_probs=47.9
Q ss_pred eEEeecccceEEEEccCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEE
Q 035748 181 YVAVGDDKGRVFVFLRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVY 243 (655)
Q Consensus 181 Y~AVGD~~Grv~Vfs~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~ 243 (655)
-+|.||++|.|.+-+++--.+++.+-.-++=|-+|.+- -||.-||.+.+||.|.-.+..
T Consensus 217 tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~----~~~d~vfsaGvd~~ii~~~~~ 275 (691)
T KOG2048|consen 217 TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVA----DNEDRVFSAGVDPKIIQYSLT 275 (691)
T ss_pred cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEc----CCCCeEEEccCCCceEEEEec
Confidence 47899999999999888666888888889999997764 477778888899988655544
No 125
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=25.53 E-value=1.6e+02 Score=33.86 Aligned_cols=60 Identities=22% Similarity=0.349 Sum_probs=46.6
Q ss_pred eeEEeecccceEEEE-ccCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEe
Q 035748 180 KYVAVGDDKGRVFVF-LRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYE 244 (655)
Q Consensus 180 kY~AVGD~~Grv~Vf-s~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~E 244 (655)
.-|+.|-..|.|=|+ ...++.+.-|.. -.+||++ +++- -|-=+|+|+..||+|..-.++.
T Consensus 360 Lifgtgt~d~~vkiwdlks~~~~a~Fpg-ht~~vk~-i~Fs---ENGY~Lat~add~~V~lwDLRK 420 (506)
T KOG0289|consen 360 LIFGTGTPDGVVKIWDLKSQTNVAKFPG-HTGPVKA-ISFS---ENGYWLATAADDGSVKLWDLRK 420 (506)
T ss_pred eEEeccCCCceEEEEEcCCccccccCCC-CCCceeE-EEec---cCceEEEEEecCCeEEEEEehh
Confidence 457888888888888 444666666655 5789999 5653 7999999999999988777765
No 126
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=24.90 E-value=3.5e+02 Score=28.29 Aligned_cols=49 Identities=16% Similarity=0.241 Sum_probs=38.6
Q ss_pred ccccceeeeeeecCCccceeeeccCCCCCCcceeEEeecccceEEEEcc-CCceEEEEecCC
Q 035748 148 WSERFQFVSAVKLESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLR-NGDVSVEFYTMS 208 (655)
Q Consensus 148 WSerF~fvSAvklda~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~-~GDvl~E~~T~~ 208 (655)
|+....- ...++..+++.- +|. +.+|+..|.+|+|++ +|+++..+.+..
T Consensus 92 W~~~~~~-~~~~~~~~~~~~--------~G~---i~~g~~~g~~y~ld~~~G~~~W~~~~~~ 141 (370)
T COG1520 92 WSYPLLG-AVAQLSGPILGS--------DGK---IYVGSWDGKLYALDASTGTLVWSRNVGG 141 (370)
T ss_pred ecccCcC-cceeccCceEEe--------CCe---EEEecccceEEEEECCCCcEEEEEecCC
Confidence 8877665 445566666553 555 889999999999999 799999999886
No 127
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=24.71 E-value=1.9e+02 Score=32.08 Aligned_cols=60 Identities=23% Similarity=0.298 Sum_probs=47.5
Q ss_pred eeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecc-eeEEEeeecCceEEEEEEE
Q 035748 180 KYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKN-ESVLVTGHENGVILIHKVY 243 (655)
Q Consensus 180 kY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRN-eT~lVTGHadG~V~~hrV~ 243 (655)
-|.+||=+.+-+-+++-+ +-.++|+.+- ...|-.|.+|. +| -.+|||-..||.|.+-.+.
T Consensus 220 ~~L~vG~d~~~i~~~D~ds~~~~~~~~AH-~~RVK~i~~~~---~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 220 SELLVGGDNEWISLKDTDSDTPLTEFLAH-ENRVKDIASYT---NPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred ceEEEecCCceEEEeccCCCccceeeecc-hhheeeeEEEe---cCCceEEEEeccCceEEEEEcc
Confidence 477888888999999888 6666666554 88999999997 33 3799999999999766654
No 128
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=24.26 E-value=87 Score=33.47 Aligned_cols=60 Identities=23% Similarity=0.190 Sum_probs=30.3
Q ss_pred CCCCCCcceeEEeecccceEEEEccCCce----EEEEecCCCCCeeEEEEeeeeecceeEEEeee
Q 035748 172 FRDYEGHSKYVAVGDDKGRVFVFLRNGDV----SVEFYTMSELPVTAMVSYVSVYKNESVLVTGH 232 (655)
Q Consensus 172 ~r~~~glskY~AVGD~~Grv~Vfs~~GDv----l~E~~T~~~spVTAm~SYlsvrRNeT~lVTGH 232 (655)
-++.+|...|+-+||-.|.||-|.-.+.- -+........|||+..+... ..+..+|+-|-
T Consensus 214 D~d~DG~~D~vYaGDl~GnlwR~dl~~~~~~~~~~~~~~~g~~PIt~aP~v~~-~~~~~~V~fGT 277 (335)
T PF05567_consen 214 DSDGDGYVDRVYAGDLGGNLWRFDLSSANPSSWSVRTIFSGTQPITAAPAVVR-DPDGRWVFFGT 277 (335)
T ss_dssp -TTSSSEE-EEEEEETTSEEEEEE--TTSTT-GG-EESGGG-----S--EEEE--TTSSEEEEE-
T ss_pred eccCCCeEEEEEEEcCCCcEEEEECCCCCcccceeeecccCcCCeEecceEEe-cCCCCEEEEEe
Confidence 46889999999999999999999554321 11111223489999777542 33444555554
No 129
>COG4331 Predicted membrane protein [Function unknown]
Probab=24.05 E-value=28 Score=34.68 Aligned_cols=25 Identities=20% Similarity=0.525 Sum_probs=22.6
Q ss_pred CcccchhhHHHHHHHHHHhheeeee
Q 035748 507 SVMSWTGPVFFFILFLFGVWHFFAK 531 (655)
Q Consensus 507 nt~~W~~P~~~~im~Lvg~Wq~~rk 531 (655)
+.++|.-|+-.+++.||..||.||-
T Consensus 103 kkklwaYPlsi~vl~lFI~YQlyr~ 127 (167)
T COG4331 103 KKKLWAYPLSILVLVLFILYQLYRF 127 (167)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999974
No 130
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=23.63 E-value=1.7e+02 Score=33.97 Aligned_cols=134 Identities=16% Similarity=0.235 Sum_probs=86.8
Q ss_pred eCccccccceeeeeeec---------CCc---------cceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEE
Q 035748 144 YSPFWSERFQFVSAVKL---------ESD---------PTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEF 204 (655)
Q Consensus 144 r~p~WSerF~fvSAvkl---------da~---------aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~ 204 (655)
|.-.|---=||.|++|= |++ |+.|..||+- --+|.+-++|-+.-.+-. |.++.++
T Consensus 174 ~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~~~v~rLeFLPyH------fLL~~~~~~G~L~Y~DVS~GklVa~~ 247 (545)
T KOG1272|consen 174 RDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRHIRVARLEFLPYH------FLLVAASEAGFLKYQDVSTGKLVASI 247 (545)
T ss_pred hhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhcCchhhhcccchh------heeeecccCCceEEEeechhhhhHHH
Confidence 44556666677777663 333 3334455542 124556667777766555 9999999
Q ss_pred ecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCc
Q 035748 205 YTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGR 284 (655)
Q Consensus 205 ~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr 284 (655)
.|+ .-+++.|--- + --.|+=+||.+|+|.+ | ||+.-+++- +.+ --..||..+++++-|
T Consensus 248 ~t~-~G~~~vm~qN--P--~NaVih~GhsnGtVSl---W-SP~skePLv------KiL------cH~g~V~siAv~~~G- 305 (545)
T KOG1272|consen 248 RTG-AGRTDVMKQN--P--YNAVIHLGHSNGTVSL---W-SPNSKEPLV------KIL------CHRGPVSSIAVDRGG- 305 (545)
T ss_pred Hcc-CCccchhhcC--C--ccceEEEcCCCceEEe---c-CCCCcchHH------HHH------hcCCCcceEEECCCC-
Confidence 988 5567765431 3 2478899999999974 3 454444321 111 113478888888876
Q ss_pred eeEEEEeeCCCcEEEEeeCCeE
Q 035748 285 MRYILSADASGKIRVFKENGMV 306 (655)
Q Consensus 285 ~RYVlsaDasGrV~VFrenGtl 306 (655)
+|.+-+-.+-+|.||+--.+.
T Consensus 306 -~YMaTtG~Dr~~kIWDlR~~~ 326 (545)
T KOG1272|consen 306 -RYMATTGLDRKVKIWDLRNFY 326 (545)
T ss_pred -cEEeecccccceeEeeecccc
Confidence 599999999999999875444
No 131
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=23.29 E-value=2.8e+02 Score=31.79 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=62.1
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIH 240 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~h 240 (655)
|++|+|+-..+-. .|..-||..|-|=++-+|=..+..+++--+..||- +|+ |. |++..+|-.+||.|.+-
T Consensus 138 Ds~Vr~m~ws~~g------~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRd-laf-Sp--nDskF~t~SdDg~ikiW 207 (464)
T KOG0284|consen 138 DSPVRTMKWSHNG------TWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRD-LAF-SP--NDSKFLTCSDDGTIKIW 207 (464)
T ss_pred cccceeEEEccCC------CEEEEcCCCceEEecccchhhhHHhhHhhhhhhhe-ecc-CC--CCceeEEecCCCeEEEE
Confidence 8888888888754 58999999999999999988888999888888998 453 45 99999999999999776
Q ss_pred EEE
Q 035748 241 KVY 243 (655)
Q Consensus 241 rV~ 243 (655)
.-+
T Consensus 208 df~ 210 (464)
T KOG0284|consen 208 DFR 210 (464)
T ss_pred ecc
Confidence 555
No 132
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=23.26 E-value=7.3e+02 Score=29.00 Aligned_cols=113 Identities=19% Similarity=0.223 Sum_probs=63.3
Q ss_pred ccceEEEEccCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEecCCCCCc-c-------------
Q 035748 187 DKGRVFVFLRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDW-S------------- 252 (655)
Q Consensus 187 ~~Grv~Vfs~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~-~------------- 252 (655)
+-|.||||.-+-. .|++.-.-+--|-. .+. -..+|-++|+||.+.|-|=++..--.-.+-.+ +
T Consensus 364 ~~GeV~v~nl~~~-~~~~rf~D~G~v~g-ts~-~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Its 440 (514)
T KOG2055|consen 364 GTGEVYVWNLRQN-SCLHRFVDDGSVHG-TSL-CISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITS 440 (514)
T ss_pred CCceEEEEecCCc-ceEEEEeecCccce-eee-eecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeee
Confidence 4567888854433 55555222333322 121 23469999999999999988774321100011 0
Q ss_pred --------hhhhhhccc-----cc-------cccCCCCCCceEEEEEeecCc-eeEEEEeeCCCcEEEEee
Q 035748 253 --------SLVIENVGK-----YV-------ATENGEEGLSVTLLEVHHIGR-MRYILSADASGKIRVFKE 302 (655)
Q Consensus 253 --------sLs~e~~r~-----~~-------~~e~~~d~~pVt~LE~hrvGr-~RYVlsaDasGrV~VFre 302 (655)
=|+|.+-.+ ++ .+-=...+.+|.|.-.-.++- ..|.+++...|||.+|+=
T Consensus 441 l~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 441 LQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred eeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 144442211 10 111224466676655555544 679999999999999973
No 133
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=23.17 E-value=48 Score=26.15 Aligned_cols=26 Identities=19% Similarity=0.457 Sum_probs=17.3
Q ss_pred cchhhHHHHHHHHHHhheeeeecccc
Q 035748 510 SWTGPVFFFILFLFGVWHFFAKKKEA 535 (655)
Q Consensus 510 ~W~~P~~~~im~Lvg~Wq~~rkKkd~ 535 (655)
.|.-.+++.+.+++.+|-|.+++|+.
T Consensus 12 ~~~~v~~~~~F~gi~~w~~~~~~k~~ 37 (49)
T PF05545_consen 12 SIGTVLFFVFFIGIVIWAYRPRNKKR 37 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHcccchhh
Confidence 45556666666677888887775654
No 134
>PRK09458 pspB phage shock protein B; Provisional
Probab=22.81 E-value=1.5e+02 Score=26.60 Aligned_cols=30 Identities=17% Similarity=0.286 Sum_probs=25.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhccCC
Q 035748 55 GQQDLLLHKLEELVRNLSDIVTKLESKFSG 84 (655)
Q Consensus 55 ~~~~~~l~~leel~~~l~~~v~~le~~l~~ 84 (655)
...+.+|+.|-|.++.|.+=+..||+-|..
T Consensus 38 ~~d~~~L~~L~~~A~rm~~RI~tLE~ILDa 67 (75)
T PRK09458 38 QEEQQRLAQLTEKAERMRERIQALEAILDA 67 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 345677888999999999999999998843
No 135
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=22.14 E-value=90 Score=22.31 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=7.9
Q ss_pred HHHHHHhheeeeecc
Q 035748 519 ILFLFGVWHFFAKKK 533 (655)
Q Consensus 519 im~Lvg~Wq~~rkKk 533 (655)
++++.++|.+.+||+
T Consensus 19 ~l~~~~~~~~~~rk~ 33 (34)
T TIGR01167 19 LLLGLGGLLLRKRKK 33 (34)
T ss_pred HHHHHHHHHheeccc
Confidence 444445555555554
No 136
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=21.97 E-value=1.1e+03 Score=26.30 Aligned_cols=220 Identities=15% Similarity=0.214 Sum_probs=116.2
Q ss_pred CCcceeEEeec-ccceEEEEccCCc----eEEEEecCCCCCeeEEEEeeeeecce-eEEEeeecCceEEEEEEEe-----
Q 035748 176 EGHSKYVAVGD-DKGRVFVFLRNGD----VSVEFYTMSELPVTAMVSYVSVYKNE-SVLVTGHENGVILIHKVYE----- 244 (655)
Q Consensus 176 ~glskY~AVGD-~~Grv~Vfs~~GD----vl~E~~T~~~spVTAm~SYlsvrRNe-T~lVTGHadG~V~~hrV~E----- 244 (655)
+.--.|.+..+ +.|+|-.|.-|++ .++...+..++|= +|+++-++- -|+++=+--|+|++..|.+
T Consensus 50 ~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p----~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~ 125 (346)
T COG2706 50 DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPP----CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQ 125 (346)
T ss_pred CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCC----eEEEECCCCCEEEEEEccCceEEEEEcccCCccc
Confidence 44467888877 7899988876654 2333333334443 667776666 5555667779999998865
Q ss_pred -----------cCCCCC-----cchhhhh------------h---------cccccccc--CCCCCCceEEEEEeecCce
Q 035748 245 -----------KPNGED-----WSSLVIE------------N---------VGKYVATE--NGEEGLSVTLLEVHHIGRM 285 (655)
Q Consensus 245 -----------s~~gdD-----~~sLs~e------------~---------~r~~~~~e--~~~d~~pVt~LE~hrvGr~ 285 (655)
+|| +. .|..-+- . .+++.+.+ .-.+|.==-|+.+|-=|+.
T Consensus 126 ~~v~~~~h~g~~p~-~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~ 204 (346)
T COG2706 126 PVVQVVKHTGSGPH-ERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKY 204 (346)
T ss_pred cceeeeecCCCCCC-ccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcE
Confidence 111 00 0100000 0 11111110 1123333357778878888
Q ss_pred eEEEEeeCCCcEEEEeeCCeEEEEEeccCCCceEEEeeeeeeeeecCccccccccCcccccccCC-CCcccceeeecccc
Q 035748 286 RYILSADASGKIRVFKENGMVHGTAAMLSSKPLVFLKQRLLFLTECGAGSLDLRTMKLRETECEG-LNNSLVRNYVFDAT 364 (655)
Q Consensus 286 RYVlsaDasGrV~VFrenGtl~G~aa~~~SrplaFlkQrllfLTe~GaaslDLrtm~vr~~pCeG-LN~S~i~syaFD~~ 364 (655)
-||+ +--++.|.||.-|+. .|.+ ... -.+.-++.. |....+++++-+-.=..-.+.|.- .| .|..
T Consensus 205 aY~v-~EL~stV~v~~y~~~-~g~~-~~l-Q~i~tlP~d--F~g~~~~aaIhis~dGrFLYasNRg~d--sI~~------ 270 (346)
T COG2706 205 AYLV-NELNSTVDVLEYNPA-VGKF-EEL-QTIDTLPED--FTGTNWAAAIHISPDGRFLYASNRGHD--SIAV------ 270 (346)
T ss_pred EEEE-eccCCEEEEEEEcCC-CceE-EEe-eeeccCccc--cCCCCceeEEEECCCCCEEEEecCCCC--eEEE------
Confidence 7864 678888888888766 5666 222 233334433 556666666544444444444432 22 2322
Q ss_pred ccceeeeeccCCcEEEEEEecCccccceEEeeeccccCCcccceeeeceeEEEEec--ceEEEEEeec
Q 035748 365 ERSKAYGYTSEGDLIHVLLLGDVTNFKCRVRSKRKFDMSEPLAFQAIKGYLLVVCE--EKIFVYNVSA 430 (655)
Q Consensus 365 ~rsKaYG~T~~G~Li~v~l~gD~~~~~CrVRs~~k~d~~~pvalqaIKGYlLvas~--~~V~VyNvTs 430 (655)
|-|..+|-.+..+. +.-.+-|.--...|..=-.||++|++ +.|.||-.+-
T Consensus 271 -----f~V~~~~g~L~~~~-----------~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 271 -----FSVDPDGGKLELVG-----------ITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred -----EEEcCCCCEEEEEE-----------EeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 33445544433211 11111111114556666678888888 5577776654
No 137
>TIGR03024 arch_pef_cterm PEF-C-terminal archaeal protein sorting domain. This domain, distantly related to the PEP-Cterm domain described in model TIGR02595, is found in Methanosarcina mazei in four different proteins, as well as in other archaea such as Methanococcoides burtonii. Several proteins with this domain have their genes only a short distance from a distant homology of EpsH, a proposed integral membrane transpeptidase.
Probab=21.94 E-value=49 Score=24.35 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=12.1
Q ss_pred CCCCcccchhhHHHHHHHHHHhheeeeecc
Q 035748 504 GESSVMSWTGPVFFFILFLFGVWHFFAKKK 533 (655)
Q Consensus 504 pe~nt~~W~~P~~~~im~Lvg~Wq~~rkKk 533 (655)
|||+ ..| +.++.++|+-.+++|||
T Consensus 2 PEF~-~i~-----l~I~all~i~~i~~rrK 25 (26)
T TIGR03024 2 PEFS-TIA-----LPIIALLAIIVILRRRK 25 (26)
T ss_pred CCCc-chH-----HHHHHHHHHHHHHhhcc
Confidence 6666 333 34444445555555554
No 138
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=21.72 E-value=32 Score=28.68 Aligned_cols=37 Identities=30% Similarity=0.520 Sum_probs=27.6
Q ss_pred CccccCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCc
Q 035748 601 TSSFRPGSADTNARPPVDPNFRSASELKFRGSTLESAGFPKR 642 (655)
Q Consensus 601 ~~~~r~~s~d~~~r~~~~p~~r~~~e~k~rg~~~e~~gf~k~ 642 (655)
...|++-..++| ...++..|+|+-.|--||..||..-
T Consensus 5 tVgY~~~~~~~~-----~~~~~~~p~i~L~G~WL~~aGF~~G 41 (57)
T PF08845_consen 5 TVGYVPYRGSNN-----ADWYRPVPEIRLKGKWLEEAGFTIG 41 (57)
T ss_pred EEEEEeccCCCC-----ccccccCceEEEchhhhHHhCCCCC
Confidence 346666555333 4568889999999999999999543
No 139
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=21.04 E-value=4.7e+02 Score=28.61 Aligned_cols=85 Identities=24% Similarity=0.316 Sum_probs=56.6
Q ss_pred eCcccccccee----eeeeecCCccceeeeccCCCCCCcceeEEeecccce-EEEEccCCceEEEEecCCCCCeeEEEEe
Q 035748 144 YSPFWSERFQF----VSAVKLESDPTCINILPFRDYEGHSKYVAVGDDKGR-VFVFLRNGDVSVEFYTMSELPVTAMVSY 218 (655)
Q Consensus 144 r~p~WSerF~f----vSAvklda~aTal~vLP~r~~~glskY~AVGD~~Gr-v~Vfs~~GDvl~E~~T~~~spVTAm~SY 218 (655)
|.--|+.-..+ +|+.+-+.++..+ ++. +|.+.+|+.+-. |+||+..|.++-...=.. .+|-.|.=
T Consensus 19 y~m~W~~~~~l~~~~va~a~~gGpIAi~-----~d~---~k~~~~~~~~p~~I~iys~sG~ll~~i~w~~-~~iv~~~w- 88 (410)
T PF04841_consen 19 YSMSWSLKDDLSDYIVAVAPYGGPIAII-----RDE---SKLVPVGSAKPNSIQIYSSSGKLLSSIPWDS-GRIVGMGW- 88 (410)
T ss_pred ccCCCCccccccceeEEEcCCCceEEEE-----ecC---cccccccCCCCcEEEEECCCCCEeEEEEECC-CCEEEEEE-
Confidence 45568766655 6666667665543 333 334444888885 999999999998876554 55555433
Q ss_pred eeeecceeEEEeeecCceEEEEEE
Q 035748 219 VSVYKNESVLVTGHENGVILIHKV 242 (655)
Q Consensus 219 lsvrRNeT~lVTGHadG~V~~hrV 242 (655)
..+|.+||- .+||.|.++.+
T Consensus 89 ---t~~e~LvvV-~~dG~v~vy~~ 108 (410)
T PF04841_consen 89 ---TDDEELVVV-QSDGTVRVYDL 108 (410)
T ss_pred ---CCCCeEEEE-EcCCEEEEEeC
Confidence 357776655 39999988754
No 140
>PRK00295 hypothetical protein; Provisional
Probab=20.86 E-value=1.6e+02 Score=25.14 Aligned_cols=27 Identities=11% Similarity=0.153 Sum_probs=18.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhc
Q 035748 55 GQQDLLLHKLEELVRNLSDIVTKLESK 81 (655)
Q Consensus 55 ~~~~~~l~~leel~~~l~~~v~~le~~ 81 (655)
-+|+.+|.+|+.-++.|.+-+..+++.
T Consensus 29 ~~Qq~~I~~L~~ql~~L~~rl~~~~~~ 55 (68)
T PRK00295 29 VEQQRVIERLQLQMAALIKRQEEMVGQ 55 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 357777777777777776666666643
No 141
>PRK02793 phi X174 lysis protein; Provisional
Probab=20.31 E-value=1.6e+02 Score=25.42 Aligned_cols=28 Identities=14% Similarity=0.253 Sum_probs=19.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhcc
Q 035748 55 GQQDLLLHKLEELVRNLSDIVTKLESKF 82 (655)
Q Consensus 55 ~~~~~~l~~leel~~~l~~~v~~le~~l 82 (655)
-+|+.++.+|+..++.|.+-+..+++..
T Consensus 32 ~~Qq~~I~~L~~~l~~L~~rl~~~~~~~ 59 (72)
T PRK02793 32 TAHEMEMAKLRDHLRLLTEKLKASQPSN 59 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 4577777888877777777776666544
Done!