Query 035748
Match_columns 655
No_of_seqs 22 out of 24
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 09:51:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035748.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035748hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sq9_A Antiviral protein SKI8; 98.5 0.00017 5.8E-09 67.4 27.9 248 161-431 16-323 (397)
2 3odt_A Protein DOA1; ubiquitin 98.4 0.00037 1.3E-08 62.3 26.8 239 152-431 8-256 (313)
3 3zwl_B Eukaryotic translation 98.4 0.00044 1.5E-08 62.9 25.8 249 161-431 74-347 (369)
4 1r5m_A SIR4-interacting protei 98.2 0.0016 5.4E-08 60.5 25.9 128 147-302 31-178 (425)
5 1vyh_C Platelet-activating fac 98.2 0.0015 5E-08 64.1 26.6 121 161-310 108-230 (410)
6 3mmy_A MRNA export factor; mRN 98.1 0.00054 1.8E-08 62.3 21.1 126 161-310 39-167 (368)
7 3v7d_B Cell division control p 98.1 0.008 2.7E-07 58.2 29.6 246 161-431 162-422 (464)
8 3vl1_A 26S proteasome regulato 98.1 0.0021 7.3E-08 60.7 24.5 234 163-430 98-365 (420)
9 3mkq_A Coatomer beta'-subunit; 98.0 0.0034 1.1E-07 65.1 27.7 157 161-342 97-261 (814)
10 3gre_A Serine/threonine-protei 98.0 0.0041 1.4E-07 59.7 25.9 152 147-310 47-208 (437)
11 3jrp_A Fusion protein of prote 98.0 0.0018 6.3E-08 59.2 22.2 120 161-303 11-133 (379)
12 3f3f_A Nucleoporin SEH1; struc 98.0 0.0019 6.4E-08 57.5 21.5 124 161-302 11-141 (351)
13 3v7d_B Cell division control p 98.0 0.011 3.9E-07 57.1 28.5 218 180-430 133-381 (464)
14 1gxr_A ESG1, transducin-like e 97.9 0.011 3.8E-07 53.2 25.6 270 159-496 49-334 (337)
15 3k26_A Polycomb protein EED; W 97.9 0.0022 7.6E-08 58.4 21.1 123 160-303 68-191 (366)
16 2ymu_A WD-40 repeat protein; u 97.9 0.0076 2.6E-07 59.7 26.1 120 161-310 16-135 (577)
17 3ei3_B DNA damage-binding prot 97.8 0.0093 3.2E-07 56.2 24.6 239 161-430 118-382 (383)
18 4aez_A CDC20, WD repeat-contai 97.8 0.003 1E-07 60.8 21.6 232 161-431 134-381 (401)
19 2ymu_A WD-40 repeat protein; u 97.8 0.036 1.2E-06 55.0 29.1 141 147-318 247-388 (577)
20 2pm9_A Protein WEB1, protein t 97.8 0.0077 2.6E-07 56.5 22.6 253 155-431 61-338 (416)
21 1yfq_A Cell cycle arrest prote 97.8 0.0024 8.3E-08 58.2 18.5 240 161-430 11-282 (342)
22 2ynn_A Coatomer subunit beta'; 97.8 0.026 9E-07 52.5 25.8 121 161-310 13-136 (304)
23 2aq5_A Coronin-1A; WD40 repeat 97.7 0.004 1.4E-07 59.6 20.6 241 161-432 81-344 (402)
24 1gxr_A ESG1, transducin-like e 97.7 0.017 5.7E-07 52.0 23.3 175 160-366 96-278 (337)
25 1k8k_C P40, ARP2/3 complex 41 97.7 0.015 5E-07 53.5 23.4 189 161-378 52-267 (372)
26 3ei3_B DNA damage-binding prot 97.7 0.034 1.2E-06 52.4 30.5 178 161-363 73-260 (383)
27 3dw8_B Serine/threonine-protei 97.7 0.012 4E-07 56.0 23.1 135 158-303 25-206 (447)
28 1r5m_A SIR4-interacting protei 97.7 0.0046 1.6E-07 57.4 19.8 191 161-367 108-344 (425)
29 1p22_A F-BOX/WD-repeat protein 97.7 0.0068 2.3E-07 59.0 21.8 161 162-342 134-327 (435)
30 1sq9_A Antiviral protein SKI8; 97.7 0.0087 3E-07 55.9 21.4 147 161-310 62-223 (397)
31 4ery_A WD repeat-containing pr 97.7 0.024 8.1E-07 52.1 23.8 137 161-310 23-187 (312)
32 3mkq_A Coatomer beta'-subunit; 97.7 0.016 5.6E-07 60.0 25.2 233 161-430 13-259 (814)
33 2ynn_A Coatomer subunit beta'; 97.6 0.0087 3E-07 55.8 20.9 134 161-319 97-232 (304)
34 2xzm_R RACK1; ribosome, transl 97.6 0.029 1E-06 53.0 24.4 179 161-367 76-269 (343)
35 1got_B GT-beta; complex (GTP-b 97.6 0.047 1.6E-06 51.6 27.5 196 161-371 55-288 (340)
36 3frx_A Guanine nucleotide-bind 97.6 0.04 1.4E-06 51.8 25.2 279 161-496 17-314 (319)
37 1k8k_C P40, ARP2/3 complex 41 97.6 0.04 1.4E-06 50.7 30.2 116 161-303 8-126 (372)
38 2ovr_B FBW7, F-BOX/WD repeat p 97.6 0.015 5E-07 56.6 22.8 232 179-431 129-392 (445)
39 2ovr_B FBW7, F-BOX/WD repeat p 97.6 0.02 6.7E-07 55.7 23.6 156 180-363 210-372 (445)
40 3jro_A Fusion protein of prote 97.5 0.01 3.4E-07 63.7 22.5 120 161-303 9-131 (753)
41 4aez_A CDC20, WD repeat-contai 97.5 0.081 2.8E-06 50.9 26.6 258 181-498 105-379 (401)
42 2xyi_A Probable histone-bindin 97.5 0.0091 3.1E-07 58.6 19.2 204 152-377 119-345 (430)
43 3dwl_C Actin-related protein 2 97.5 0.006 2.1E-07 57.0 17.1 118 161-303 11-130 (377)
44 3lrv_A PRE-mRNA-splicing facto 97.5 0.006 2E-07 57.5 17.2 203 144-366 10-227 (343)
45 4a11_B DNA excision repair pro 97.5 0.023 7.9E-07 52.6 20.7 282 161-500 43-366 (408)
46 3vl1_A 26S proteasome regulato 97.4 0.059 2E-06 50.9 23.8 134 161-310 139-285 (420)
47 4e54_B DNA damage-binding prot 97.4 0.0046 1.6E-07 60.6 16.6 183 161-368 119-311 (435)
48 3zwl_B Eukaryotic translation 97.4 0.069 2.4E-06 48.5 26.6 113 161-303 32-150 (369)
49 3odt_A Protein DOA1; ubiquitin 97.4 0.035 1.2E-06 49.5 20.7 138 179-342 114-257 (313)
50 3i2n_A WD repeat-containing pr 97.4 0.042 1.4E-06 50.0 21.3 122 160-303 17-147 (357)
51 2aq5_A Coronin-1A; WD40 repeat 97.4 0.012 4.2E-07 56.3 18.3 234 180-431 48-300 (402)
52 2xzm_R RACK1; ribosome, transl 97.3 0.11 3.7E-06 49.1 25.3 123 161-305 21-150 (343)
53 4gqb_B Methylosome protein 50; 97.3 0.016 5.5E-07 56.3 19.0 120 155-302 76-199 (344)
54 3bws_A Protein LP49; two-domai 97.3 0.083 2.8E-06 50.3 23.4 131 152-310 113-250 (433)
55 2vdu_B TRNA (guanine-N(7)-)-me 97.3 0.084 2.9E-06 51.8 24.1 127 161-309 102-235 (450)
56 4aow_A Guanine nucleotide-bind 97.3 0.095 3.3E-06 47.5 24.0 132 161-318 86-218 (340)
57 4gqb_B Methylosome protein 50; 97.3 0.02 6.8E-07 55.7 19.2 190 161-379 127-325 (344)
58 3lrv_A PRE-mRNA-splicing facto 97.3 0.05 1.7E-06 51.2 21.2 179 182-382 88-288 (343)
59 3gre_A Serine/threonine-protei 97.3 0.0018 6.1E-08 62.2 11.3 133 161-302 214-357 (437)
60 3sfz_A APAF-1, apoptotic pepti 97.3 0.083 2.9E-06 58.2 25.6 123 161-310 615-739 (1249)
61 3k26_A Polycomb protein EED; W 97.2 0.02 6.7E-07 52.2 17.3 126 160-303 114-259 (366)
62 4g56_B MGC81050 protein; prote 97.2 0.075 2.6E-06 51.2 22.2 238 161-431 42-302 (357)
63 3sfz_A APAF-1, apoptotic pepti 97.2 0.021 7.2E-07 62.9 20.4 122 161-309 657-780 (1249)
64 4a11_B DNA excision repair pro 97.2 0.006 2.1E-07 56.5 13.7 140 153-303 133-275 (408)
65 4g56_B MGC81050 protein; prote 97.2 0.038 1.3E-06 53.3 19.6 125 161-310 139-265 (357)
66 3jrp_A Fusion protein of prote 97.2 0.062 2.1E-06 49.2 19.9 122 161-302 55-189 (379)
67 4ery_A WD repeat-containing pr 97.1 0.034 1.2E-06 51.0 18.0 122 161-310 107-230 (312)
68 1pgu_A Actin interacting prote 97.1 0.0051 1.7E-07 60.7 12.6 117 161-303 488-613 (615)
69 3dm0_A Maltose-binding peripla 97.0 0.13 4.6E-06 53.7 23.6 177 162-366 431-615 (694)
70 4e54_B DNA damage-binding prot 97.0 0.056 1.9E-06 52.9 19.7 237 161-430 164-430 (435)
71 2pbi_B Guanine nucleotide-bind 97.0 0.2 6.7E-06 48.1 23.0 139 161-310 64-236 (354)
72 3f3f_A Nucleoporin SEH1; struc 97.0 0.02 6.8E-07 50.9 14.8 133 162-303 168-336 (351)
73 1pgu_A Actin interacting prote 96.9 0.025 8.6E-07 55.8 15.9 129 155-310 440-580 (615)
74 2hes_X YDR267CP; beta-propelle 96.9 0.29 1E-05 46.2 26.4 119 161-302 14-136 (330)
75 3i2n_A WD repeat-containing pr 96.9 0.25 8.5E-06 45.0 22.9 207 161-383 65-288 (357)
76 4gga_A P55CDC, cell division c 96.9 0.24 8.3E-06 48.1 22.1 228 162-430 148-395 (420)
77 2oaj_A Protein SNI1; WD40 repe 96.8 0.21 7.2E-06 55.6 24.1 112 181-303 366-518 (902)
78 4ggc_A P55CDC, cell division c 96.8 0.26 8.9E-06 44.2 20.7 111 162-302 68-179 (318)
79 3ow8_A WD repeat-containing pr 96.7 0.096 3.3E-06 49.7 18.0 109 179-310 134-244 (321)
80 1vyh_C Platelet-activating fac 96.7 0.23 7.7E-06 48.7 20.8 120 162-310 151-272 (410)
81 1yfq_A Cell cycle arrest prote 96.7 0.052 1.8E-06 49.5 15.1 133 159-310 148-289 (342)
82 1erj_A Transcriptional repress 96.7 0.042 1.4E-06 53.2 15.3 136 159-310 204-348 (393)
83 3ow8_A WD repeat-containing pr 96.7 0.061 2.1E-06 51.1 16.1 120 162-310 165-286 (321)
84 1got_B GT-beta; complex (GTP-b 96.7 0.066 2.3E-06 50.6 16.2 122 162-310 185-308 (340)
85 3dm0_A Maltose-binding peripla 96.7 0.3 1E-05 51.0 22.6 118 161-305 382-504 (694)
86 2xyi_A Probable histone-bindin 96.7 0.074 2.5E-06 52.2 16.9 120 162-303 182-308 (430)
87 3fm0_A Protein CIAO1; WDR39,SG 96.6 0.19 6.5E-06 47.8 19.1 116 161-302 105-223 (345)
88 3fm0_A Protein CIAO1; WDR39,SG 96.6 0.043 1.5E-06 52.2 14.6 131 161-303 150-282 (345)
89 3frx_A Guanine nucleotide-bind 96.6 0.49 1.7E-05 44.4 23.5 176 162-369 66-253 (319)
90 2pbi_B Guanine nucleotide-bind 96.6 0.059 2E-06 51.7 15.5 125 161-310 196-322 (354)
91 3jro_A Fusion protein of prote 96.6 0.21 7.1E-06 53.7 21.0 123 161-303 53-188 (753)
92 2vdu_B TRNA (guanine-N(7)-)-me 96.5 0.021 7.3E-07 56.0 12.4 124 159-310 147-278 (450)
93 3dwl_C Actin-related protein 2 96.3 0.022 7.4E-07 53.2 10.3 126 160-303 99-235 (377)
94 1l0q_A Surface layer protein; 96.2 0.8 2.7E-05 42.9 23.3 216 180-430 3-233 (391)
95 3iz6_a 40S ribosomal protein R 96.2 0.7 2.4E-05 44.5 20.5 72 161-243 66-138 (380)
96 2pm7_B Protein transport prote 96.2 0.04 1.4E-06 51.1 11.5 119 162-303 10-131 (297)
97 4aow_A Guanine nucleotide-bind 96.2 0.7 2.4E-05 41.8 24.7 133 146-305 22-160 (340)
98 4h5i_A Guanine nucleotide-exch 96.1 0.017 5.9E-07 56.0 8.9 72 162-243 270-342 (365)
99 1erj_A Transcriptional repress 96.1 1.1 3.9E-05 43.3 24.5 115 163-306 125-241 (393)
100 2pm9_A Protein WEB1, protein t 96.0 0.1 3.5E-06 49.0 13.2 119 161-302 165-292 (416)
101 2hes_X YDR267CP; beta-propelle 96.0 0.11 3.7E-06 49.1 13.5 119 161-303 107-229 (330)
102 1p22_A F-BOX/WD-repeat protein 96.0 0.021 7E-07 55.7 8.7 28 272-303 386-413 (435)
103 3mmy_A MRNA export factor; mRN 95.8 0.7 2.4E-05 41.9 17.2 136 159-310 125-311 (368)
104 2oaj_A Protein SNI1; WD40 repe 95.6 1.2 4E-05 49.7 21.8 91 147-244 560-661 (902)
105 3dw8_B Serine/threonine-protei 95.6 0.088 3E-06 50.0 11.3 121 161-302 177-313 (447)
106 2j04_B YDR362CP, TAU91; beta p 95.6 0.42 1.4E-05 50.3 17.3 135 158-303 130-295 (524)
107 3iz6_a 40S ribosomal protein R 95.4 0.15 5.2E-06 49.1 12.2 120 161-304 249-375 (380)
108 2j04_B YDR362CP, TAU91; beta p 95.4 0.45 1.6E-05 50.0 16.7 150 162-332 208-375 (524)
109 2pm7_B Protein transport prote 95.2 0.23 7.8E-06 46.1 12.4 110 179-303 170-284 (297)
110 1q7f_A NHL, brain tumor CG1071 95.0 2 6.7E-05 39.0 22.1 221 180-430 42-280 (286)
111 1l0q_A Surface layer protein; 94.9 2.6 8.8E-05 39.5 23.4 239 153-430 23-275 (391)
112 3bg1_A Protein SEC13 homolog; 94.8 0.16 5.4E-06 47.7 10.2 121 161-303 13-135 (316)
113 3vu4_A KMHSV2; beta-propeller 94.8 0.3 1E-05 46.9 12.3 74 161-244 195-271 (355)
114 2oit_A Nucleoporin 214KDA; NH2 94.7 0.74 2.5E-05 46.5 15.4 126 158-310 89-229 (434)
115 4gq1_A NUP37; propeller, trans 94.6 0.42 1.4E-05 46.6 12.9 150 153-310 178-355 (393)
116 3bg1_A Protein SEC13 homolog; 94.4 0.34 1.2E-05 45.5 11.5 109 179-303 179-292 (316)
117 3dsm_A Uncharacterized protein 94.1 2.3 7.7E-05 40.7 16.6 183 187-394 103-323 (328)
118 3vu4_A KMHSV2; beta-propeller 94.1 0.23 8E-06 47.6 9.7 103 180-303 148-270 (355)
119 1nir_A Nitrite reductase; hemo 94.0 2.9 0.0001 43.7 18.7 90 148-242 208-309 (543)
120 1nr0_A Actin interacting prote 94.0 1.1 3.8E-05 46.4 15.3 121 158-303 445-566 (611)
121 3bws_A Protein LP49; two-domai 93.8 4.7 0.00016 38.3 21.3 141 179-342 181-336 (433)
122 4gga_A P55CDC, cell division c 93.0 7 0.00024 37.9 23.2 99 180-303 117-217 (420)
123 4ggc_A P55CDC, cell division c 92.6 0.47 1.6E-05 42.6 8.7 75 161-244 240-315 (318)
124 3dsm_A Uncharacterized protein 92.4 6.9 0.00024 37.4 17.0 218 181-430 56-302 (328)
125 1nr0_A Actin interacting prote 92.2 2.1 7.3E-05 44.3 14.1 127 163-310 149-277 (611)
126 3no2_A Uncharacterized protein 92.0 8.5 0.00029 36.5 19.3 50 178-231 4-54 (276)
127 1nir_A Nitrite reductase; hemo 91.8 14 0.00048 38.6 22.1 241 180-430 150-458 (543)
128 3fvz_A Peptidyl-glycine alpha- 91.4 9.7 0.00033 36.0 23.1 136 189-336 69-220 (329)
129 3hfq_A Uncharacterized protein 90.5 11 0.00037 35.0 22.2 230 178-430 1-271 (347)
130 1jof_A Carboxy-CIS,CIS-muconat 90.4 13 0.00044 35.6 18.7 61 178-243 1-68 (365)
131 2j04_A TAU60, YPL007P, hypothe 89.8 3.2 0.00011 45.9 13.4 141 161-323 85-237 (588)
132 4h5i_A Guanine nucleotide-exch 88.4 8.1 0.00028 37.3 13.7 138 152-310 167-307 (365)
133 1rwi_B Serine/threonine-protei 87.9 14 0.00048 32.7 15.9 156 183-363 81-243 (270)
134 1ri6_A Putative isomerase YBHE 87.3 16 0.00056 32.8 25.3 127 153-306 29-164 (343)
135 1ri6_A Putative isomerase YBHE 86.5 18 0.00061 32.6 24.0 229 180-429 5-261 (343)
136 3vgz_A Uncharacterized protein 85.7 21 0.00071 32.5 24.4 244 159-430 38-303 (353)
137 1q7f_A NHL, brain tumor CG1071 85.7 20 0.00068 32.3 18.0 124 188-333 99-227 (286)
138 4gq1_A NUP37; propeller, trans 82.7 37 0.0012 32.9 22.9 106 179-302 101-216 (393)
139 1pby_B Quinohemoprotein amine 81.7 29 0.00099 31.1 20.9 147 180-343 2-166 (337)
140 3ei3_A DNA damage-binding prot 81.5 13 0.00045 43.5 13.6 138 154-303 819-998 (1158)
141 3u4y_A Uncharacterized protein 80.7 33 0.0011 31.2 21.4 223 180-431 11-253 (331)
142 3e5z_A Putative gluconolactona 80.0 35 0.0012 31.1 18.9 53 181-239 42-94 (296)
143 3q7m_A Lipoprotein YFGL, BAMB; 79.8 42 0.0014 31.8 21.6 222 181-427 145-375 (376)
144 2oit_A Nucleoporin 214KDA; NH2 79.3 3.7 0.00013 41.4 7.2 72 161-242 149-221 (434)
145 3hfq_A Uncharacterized protein 79.2 40 0.0014 31.2 23.8 126 161-306 39-175 (347)
146 3ei3_A DNA damage-binding prot 77.3 17 0.00059 42.6 12.8 90 152-243 544-635 (1158)
147 2z2n_A Virginiamycin B lyase; 72.5 51 0.0017 29.1 24.2 216 181-430 70-295 (299)
148 3u4y_A Uncharacterized protein 69.8 65 0.0022 29.2 16.9 145 180-343 96-255 (331)
149 3scy_A Hypothetical bacterial 67.5 81 0.0028 29.4 22.9 71 161-243 49-128 (361)
150 1rwi_B Serine/threonine-protei 60.7 88 0.003 27.5 19.9 212 186-430 43-264 (270)
151 3scy_A Hypothetical bacterial 60.5 1.1E+02 0.0037 28.5 24.4 103 180-303 14-128 (361)
152 1qks_A Cytochrome CD1 nitrite 59.8 1.9E+02 0.0064 31.0 20.4 60 178-243 166-226 (567)
153 3no2_A Uncharacterized protein 59.2 26 0.00089 33.1 7.7 53 180-238 137-189 (276)
154 1qks_A Cytochrome CD1 nitrite 57.6 1.3E+02 0.0046 32.1 13.6 142 286-431 209-374 (567)
155 2w18_A PALB2, fancn, partner a 56.0 25 0.00084 36.7 7.5 58 181-242 297-355 (356)
156 1pby_B Quinohemoprotein amine 55.2 1.2E+02 0.004 27.2 18.3 50 153-207 22-75 (337)
157 2j04_A TAU60, YPL007P, hypothe 54.2 58 0.002 36.2 10.4 106 179-307 141-257 (588)
158 3nol_A Glutamine cyclotransfer 50.3 2.1E+02 0.007 28.6 12.8 142 274-430 45-201 (262)
159 2akf_A Coronin-1A; coiled coil 49.3 11 0.00036 27.6 2.4 21 62-82 2-22 (32)
160 1kv9_A Type II quinohemoprotei 46.4 2.1E+02 0.0071 30.9 13.0 128 180-335 315-524 (668)
161 1xip_A Nucleoporin NUP159; bet 46.1 80 0.0027 32.7 9.4 119 152-310 79-200 (388)
162 2hz6_A Endoplasmic reticulum t 45.9 21 0.00073 35.0 5.0 56 180-242 10-66 (369)
163 3dr2_A Exported gluconolactona 45.0 1.9E+02 0.0065 26.7 12.3 21 411-431 248-268 (305)
164 2fp8_A Strictosidine synthase; 44.2 50 0.0017 30.9 7.0 51 188-243 259-312 (322)
165 3q7m_A Lipoprotein YFGL, BAMB; 42.9 2.2E+02 0.0076 26.9 27.7 57 180-241 54-119 (376)
166 1jof_A Carboxy-CIS,CIS-muconat 42.6 2.3E+02 0.0078 26.9 22.2 119 163-306 41-180 (365)
167 2be1_A Serine/threonine-protei 40.8 37 0.0013 34.7 5.9 64 178-242 9-74 (339)
168 1xip_A Nucleoporin NUP159; bet 40.6 80 0.0027 32.6 8.4 63 161-242 126-189 (388)
169 1yiq_A Quinohemoprotein alcoho 38.9 4.1E+02 0.014 28.8 14.2 126 180-332 320-540 (689)
170 2fp8_A Strictosidine synthase; 38.0 2.5E+02 0.0087 26.1 18.3 25 180-204 31-55 (322)
171 3vgz_A Uncharacterized protein 37.7 2.3E+02 0.0079 25.6 19.3 143 181-342 154-305 (353)
172 3sjl_D Methylamine dehydrogena 35.4 2.1E+02 0.0071 29.7 10.5 135 283-430 89-256 (386)
173 3qqz_A Putative uncharacterize 34.9 3.3E+02 0.011 26.5 11.4 88 146-242 7-98 (255)
174 2oiz_A Aromatic amine dehydrog 32.0 3.6E+02 0.012 26.1 12.5 108 317-430 112-230 (361)
175 2oiz_A Aromatic amine dehydrog 32.0 3.6E+02 0.012 26.1 17.8 19 413-431 317-335 (361)
176 3amr_A 3-phytase; beta-propell 31.9 4.5E+02 0.016 27.4 12.4 59 367-429 144-207 (355)
177 3c75_H MADH, methylamine dehyd 30.5 4.2E+02 0.014 27.6 12.0 127 294-431 148-296 (426)
178 1jmx_B Amine dehydrogenase; ox 29.1 3.2E+02 0.011 24.6 11.0 138 224-382 10-171 (349)
179 3hxj_A Pyrrolo-quinoline quino 27.8 3.4E+02 0.012 24.5 15.4 176 288-504 150-329 (330)
180 2ecf_A Dipeptidyl peptidase IV 27.1 1.8E+02 0.0062 30.1 8.4 58 181-242 350-411 (741)
181 2w18_A PALB2, fancn, partner a 24.6 1.6E+02 0.0055 30.7 7.5 52 188-244 158-209 (356)
182 2z2n_A Virginiamycin B lyase; 22.8 3.9E+02 0.013 23.4 20.1 135 181-338 112-253 (299)
183 3v65_B Low-density lipoprotein 22.6 5.7E+02 0.019 25.3 15.7 175 288-496 130-315 (386)
184 1n7d_A LDL receptor, low-densi 21.3 8.2E+02 0.028 26.7 13.9 141 282-430 463-614 (699)
185 3e5z_A Putative gluconolactona 21.2 2.7E+02 0.0094 25.1 7.5 43 188-235 236-278 (296)
186 2iwa_A Glutamine cyclotransfer 20.9 6E+02 0.02 24.9 12.9 133 287-430 35-181 (266)
187 3hxj_A Pyrrolo-quinoline quino 20.3 4.7E+02 0.016 23.5 17.0 54 180-239 108-161 (330)
No 1
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=98.51 E-value=0.00017 Score=67.43 Aligned_cols=248 Identities=13% Similarity=0.112 Sum_probs=136.8
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-Cc------eEEEEecCCCCCeeEEEEeeeeecc----e---e
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GD------VSVEFYTMSELPVTAMVSYVSVYKN----E---S 226 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GD------vl~E~~T~~~spVTAm~SYlsvrRN----e---T 226 (655)
...|+|+..-| +++|+|...|.|.+++.+ +. .+..+. .-..+|++| ++. .+ . .
T Consensus 16 ~~~i~~~~~~~--------~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~h~~~v~~~-~~~---~~~~~~g~~~~ 82 (397)
T 1sq9_A 16 DADIFSVSACN--------SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF-VHKSGLHHV-DVL---QAIERDAFELC 82 (397)
T ss_dssp SSCEEEEEECS--------SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE-CCTTCEEEE-EEE---EEEETTTEEEE
T ss_pred hcCeEEEEecC--------CeEEEEcCCCEEEEEECCCcccccCCCcceEEe-cCCCcEEEE-EEe---cccccCCcccc
Confidence 56788888865 699999999999999777 55 455555 457889984 432 34 6 8
Q ss_pred EEEeeecCceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeec--CceeE-EEEeeCCCcEEEEeeC
Q 035748 227 VLVTGHENGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHI--GRMRY-ILSADASGKIRVFKEN 303 (655)
Q Consensus 227 ~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrv--Gr~RY-VlsaDasGrV~VFren 303 (655)
+|++|..||.|.+..+........ . ..+.+..........+|+.+.++.. ...++ ++++..+|.|.+|.-.
T Consensus 83 ~l~s~~~dg~i~iw~~~~~~~~~~---~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 156 (397)
T 1sq9_A 83 LVATTSFSGDLLFYRITREDETKK---V---IFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFH 156 (397)
T ss_dssp EEEEEETTSCEEEEEEEECTTTCC---E---EEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEE
T ss_pred EEEEEcCCCCEEEEEccCCccccc---c---cceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCC
Confidence 999999999999888776211000 0 0112210000000468899888733 45567 9999999999999875
Q ss_pred C----------------eEEE-----EEeccCCCceEEEeeeeeeeeecCccc---cccccCcc-ccccc---CCCCccc
Q 035748 304 G----------------MVHG-----TAAMLSSKPLVFLKQRLLFLTECGAGS---LDLRTMKL-RETEC---EGLNNSL 355 (655)
Q Consensus 304 G----------------tl~G-----~aa~~~SrplaFlkQrllfLTe~Gaas---lDLrtm~v-r~~pC---eGLN~S~ 355 (655)
. ++.+ ........-++|-... ++++...-+. .|+++.+. ....+ +..+...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~ 235 (397)
T 1sq9_A 157 PFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS 235 (397)
T ss_dssp SSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCC
T ss_pred ccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCc
Confidence 4 4433 1101223456666555 5554433332 37766432 22333 2223566
Q ss_pred ceeeeccccccceeeeeccCC-cEEEEEEecCccccceEEeeecc----------ccCCcc-cceee--eceeEEEEec-
Q 035748 356 VRNYVFDATERSKAYGYTSEG-DLIHVLLLGDVTNFKCRVRSKRK----------FDMSEP-LAFQA--IKGYLLVVCE- 420 (655)
Q Consensus 356 i~syaFD~~~rsKaYG~T~~G-~Li~v~l~gD~~~~~CrVRs~~k----------~d~~~p-valqa--IKGYlLvas~- 420 (655)
+.+.+|++...--+.|-.+.+ ..|.+| |....+|...-... +....+ .+++- -..||+.++.
T Consensus 236 i~~i~~~~~~~~l~~~~~d~~~g~i~i~---d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 312 (397)
T 1sq9_A 236 IRSVKFSPQGSLLAIAHDSNSFGCITLY---ETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD 312 (397)
T ss_dssp EEEEEECSSTTEEEEEEEETTEEEEEEE---ETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT
T ss_pred cceEEECCCCCEEEEEecCCCCceEEEE---ECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCC
Confidence 788888776544333332211 234444 22222332222110 002222 22222 2346666665
Q ss_pred ceEEEEEeece
Q 035748 421 EKIFVYNVSAQ 431 (655)
Q Consensus 421 ~~V~VyNvTsq 431 (655)
..|.+||+.+.
T Consensus 313 g~i~iwd~~~~ 323 (397)
T 1sq9_A 313 GKLRFWDVKTK 323 (397)
T ss_dssp SEEEEEETTTT
T ss_pred CeEEEEEcCCC
Confidence 46999998763
No 2
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=98.43 E-value=0.00037 Score=62.33 Aligned_cols=239 Identities=12% Similarity=0.119 Sum_probs=135.7
Q ss_pred ceeeeeeec-CCccceeeeccCCCCCCcceeEEeecccceEEEEccCCceEEEEecCCCCCeeEEEEeeeeecceeEEEe
Q 035748 152 FQFVSAVKL-ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVT 230 (655)
Q Consensus 152 F~fvSAvkl-da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVT 230 (655)
++++.-++- ...|+|+.. |. .+++|+|...|.|.+++.+..-..........+|++| ++. .+...|++
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~------~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~-~~~---~~~~~l~~ 76 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VD------DSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSV-CYD---SEKELLLF 76 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EE------TTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEE-EEE---TTTTEEEE
T ss_pred HHHHHHhhCCCCCcEEEEe-cC------CCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEE-EEC---CCCCEEEE
Confidence 444444444 567888877 53 3579999999999999877444444444458899984 432 47889999
Q ss_pred eecCceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeCCeEEEEE
Q 035748 231 GHENGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKENGMVHGTA 310 (655)
Q Consensus 231 GHadG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFrenGtl~G~a 310 (655)
|..||.|.+.+++....+.- ...+ .....+|+.+.. ..++++++..+|.|.+|+ .+...-..
T Consensus 77 ~~~dg~i~~~~~~~~~~~~~--------~~~~-----~~~~~~i~~~~~----~~~~l~~~~~d~~i~~~d-~~~~~~~~ 138 (313)
T 3odt_A 77 GGKDTMINGVPLFATSGEDP--------LYTL-----IGHQGNVCSLSF----QDGVVISGSWDKTAKVWK-EGSLVYNL 138 (313)
T ss_dssp EETTSCEEEEETTCCTTSCC---------CEE-----CCCSSCEEEEEE----ETTEEEEEETTSEEEEEE-TTEEEEEE
T ss_pred ecCCCeEEEEEeeecCCCCc--------ccch-----hhcccCEEEEEe----cCCEEEEEeCCCCEEEEc-CCcEEEec
Confidence 99999998777765322211 1112 223457888776 345999999999999999 55544444
Q ss_pred eccCCCc---eEEEe---eeeeeeeecCcccc-ccccCcccccccCCCCcccceeeeccccccceeeeeccCCcEEEEEE
Q 035748 311 AMLSSKP---LVFLK---QRLLFLTECGAGSL-DLRTMKLRETECEGLNNSLVRNYVFDATERSKAYGYTSEGDLIHVLL 383 (655)
Q Consensus 311 a~~~Srp---laFlk---QrllfLTe~Gaasl-DLrtm~vr~~pCeGLN~S~i~syaFD~~~rsKaYG~T~~G~Li~v~l 383 (655)
.....+ +.|.. +.++.-+..|.-.+ |... ......+.....+...+|.+... ...-+.+|. |++|
T Consensus 139 -~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~-i~i~- 210 (313)
T 3odt_A 139 -QAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK---VIKTFSGIHNDVVRHLAVVDDGH--FISCSNDGL-IKLV- 210 (313)
T ss_dssp -ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE---EEEEECSSCSSCEEEEEEEETTE--EEEEETTSE-EEEE-
T ss_pred -ccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc---eEEEEeccCcccEEEEEEcCCCe--EEEccCCCe-EEEE-
Confidence 233333 34444 23333333332221 3221 12222333455677777776655 333344443 4444
Q ss_pred ecCccccceEEeeeccccCCcccceeee-ceeEEEEec-ceEEEEEeece
Q 035748 384 LGDVTNFKCRVRSKRKFDMSEPLAFQAI-KGYLLVVCE-EKIFVYNVSAQ 431 (655)
Q Consensus 384 ~gD~~~~~CrVRs~~k~d~~~pvalqaI-KGYlLvas~-~~V~VyNvTsq 431 (655)
|...-+|...-..+ -.+..+++-- .|+++.++. ..|.+||+.+.
T Consensus 211 --d~~~~~~~~~~~~~--~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 256 (313)
T 3odt_A 211 --DMHTGDVLRTYEGH--ESFVYCIKLLPNGDIVSCGEDRTVRIWSKENG 256 (313)
T ss_dssp --ETTTCCEEEEEECC--SSCEEEEEECTTSCEEEEETTSEEEEECTTTC
T ss_pred --ECCchhhhhhhhcC--CceEEEEEEecCCCEEEEecCCEEEEEECCCC
Confidence 22222332222111 1222222221 467777766 47999998763
No 3
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=98.35 E-value=0.00044 Score=62.87 Aligned_cols=249 Identities=16% Similarity=0.151 Sum_probs=144.6
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecC-----
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHEN----- 234 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHad----- 234 (655)
...|+|+..-|. .+|+++|...|.|.+++.. |..+..+. ...+|+++ ++ ..+...+++|..|
T Consensus 74 ~~~v~~~~~~~~------~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~-~~---~~~~~~l~~~~~~~~~~~ 141 (369)
T 3zwl_B 74 TGTIWSIDVDCF------TKYCVTGSADYSIKLWDVSNGQCVATWK--SPVPVKRV-EF---SPCGNYFLAILDNVMKNP 141 (369)
T ss_dssp SSCEEEEEECTT------SSEEEEEETTTEEEEEETTTCCEEEEEE--CSSCEEEE-EE---CTTSSEEEEEECCBTTBC
T ss_pred CCcEEEEEEcCC------CCEEEEEeCCCeEEEEECCCCcEEEEee--cCCCeEEE-EE---ccCCCEEEEecCCccCCC
Confidence 567888888773 3699999999999999755 88777776 57788884 33 2477889999998
Q ss_pred ceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC--CeEEEEEec
Q 035748 235 GVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN--GMVHGTAAM 312 (655)
Q Consensus 235 G~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren--Gtl~G~aa~ 312 (655)
|.|.+..+........+.....+....+ ........|+.+.+.. ..++++++..+|.|.+|.-. +...... .
T Consensus 142 g~i~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~ 215 (369)
T 3zwl_B 142 GSINIYEIERDSATHELTKVSEEPIHKI---ITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSI-D 215 (369)
T ss_dssp CEEEEEEEEECTTTCCEEEECSSCSEEE---ECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEE-E
T ss_pred CEEEEEEecCCccceeecccccceeeec---cCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEE-e
Confidence 9999998887433222222222222222 1222334777777665 34589999999999999985 5666666 4
Q ss_pred cCCCce---EEEee--eeeeeeecCcc-ccccccCcccccccCCCCcccceeeeccccccceeeeeccCCcEEEEEEecC
Q 035748 313 LSSKPL---VFLKQ--RLLFLTECGAG-SLDLRTMKLRETECEGLNNSLVRNYVFDATERSKAYGYTSEGDLIHVLLLGD 386 (655)
Q Consensus 313 ~~Srpl---aFlkQ--rllfLTe~Gaa-slDLrtm~vr~~pCeGLN~S~i~syaFD~~~rsKaYG~T~~G~Li~v~l~gD 386 (655)
....++ +|-.. .++.-+..|.- ..|+++.+....-- .+..+...+|++..+.-++|-.+++..+..+-..+
T Consensus 216 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 292 (369)
T 3zwl_B 216 LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE---TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANE 292 (369)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---CSSCEEEEEECSSSSEEEEEECCC-----------
T ss_pred cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec---CCCCceeEEecCCCceEEEeecCCCceEEEEecCC
Confidence 434444 33332 33333333422 33777654332211 45567788888888888888776655444332222
Q ss_pred ccccceEEeeecc------c-cCCcccceeee---ceeEEEEec-ceEEEEEeece
Q 035748 387 VTNFKCRVRSKRK------F-DMSEPLAFQAI---KGYLLVVCE-EKIFVYNVSAQ 431 (655)
Q Consensus 387 ~~~~~CrVRs~~k------~-d~~~pvalqaI---KGYlLvas~-~~V~VyNvTsq 431 (655)
....++++.... + ....++.--++ ..||+.++. ..|.+|++...
T Consensus 293 -~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 293 -GKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp ---CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred -CcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 222333333211 1 12222222222 235666654 57999999875
No 4
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=98.19 E-value=0.0016 Score=60.50 Aligned_cols=128 Identities=13% Similarity=0.163 Sum_probs=76.5
Q ss_pred cccccceeeeeeecCCccceeeeccCCCCCCcceeEEeecccceEEEEcc----C-Cc------eEEEEecC--------
Q 035748 147 FWSERFQFVSAVKLESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLR----N-GD------VSVEFYTM-------- 207 (655)
Q Consensus 147 ~WSerF~fvSAvklda~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~----~-GD------vl~E~~T~-------- 207 (655)
-|....+.+....-..+|+|+..-|... .|+|+|...|.|.+++. . |. ...++...
T Consensus 31 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~-----~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (425)
T 1r5m_A 31 DLDGFVKILKEIVKLDNIVSSTWNPLDE-----SILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSG 105 (425)
T ss_dssp ---CCCEECEEEEECSCCSEEEECSSCT-----TEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC----
T ss_pred cchhhhhheeeeeccCceEEEEECCCCC-----cEEEEecCCceEEEEEEecccCCcccccccccccccccccccccccc
Confidence 3444444444444457899999888532 39999999999999966 4 77 45555431
Q ss_pred -CCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCcee
Q 035748 208 -SELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMR 286 (655)
Q Consensus 208 -~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~R 286 (655)
...+|++| ++ ..+..+|++|..||.|.+.. ..+.. .+.+ .....+|+.+.+.. ..+
T Consensus 106 ~~~~~v~~~-~~---s~~~~~l~~~~~dg~i~i~~----~~~~~--------~~~~-----~~~~~~v~~~~~~~--~~~ 162 (425)
T 1r5m_A 106 KTTNQVTCL-AW---SHDGNSIVTGVENGELRLWN----KTGAL--------LNVL-----NFHRAPIVSVKWNK--DGT 162 (425)
T ss_dssp --CBCEEEE-EE---CTTSSEEEEEETTSCEEEEE----TTSCE--------EEEE-----CCCCSCEEEEEECT--TSS
T ss_pred CCCCceEEE-EE---cCCCCEEEEEeCCCeEEEEe----CCCCe--------eeec-----cCCCccEEEEEECC--CCC
Confidence 24588884 43 24888999999999998764 22211 1111 11234566655543 334
Q ss_pred EEEEeeCCCcEEEEee
Q 035748 287 YILSADASGKIRVFKE 302 (655)
Q Consensus 287 YVlsaDasGrV~VFre 302 (655)
+++++..+|.|.+|.-
T Consensus 163 ~l~~~~~d~~i~iwd~ 178 (425)
T 1r5m_A 163 HIISMDVENVTILWNV 178 (425)
T ss_dssp EEEEEETTCCEEEEET
T ss_pred EEEEEecCCeEEEEEC
Confidence 6666666777777665
No 5
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=98.16 E-value=0.0015 Score=64.13 Aligned_cols=121 Identities=16% Similarity=0.171 Sum_probs=85.3
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILI 239 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~ 239 (655)
..+|+|+..-|. ..++|.|...|.|.|++.. |..+..+.. -..+|++ +++. .+..+|+||..||.|.+
T Consensus 108 ~~~V~~~~~~p~------~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~-h~~~V~~-v~~~---~~~~~l~sgs~D~~i~i 176 (410)
T 1vyh_C 108 RSPVTRVIFHPV------FSVMVSASEDATIKVWDYETGDFERTLKG-HTDSVQD-ISFD---HSGKLLASCSADMTIKL 176 (410)
T ss_dssp SSCEEEEEECSS------SSEEEEEESSSCEEEEETTTCCCCEEECC-CSSCEEE-EEEC---TTSSEEEEEETTSCCCE
T ss_pred CCcEEEEEEcCC------CCEEEEEeCCCeEEEEECCCCcEEEEEec-cCCcEEE-EEEc---CCCCEEEEEeCCCeEEE
Confidence 568899988774 3589999999999999765 877665543 3568988 4442 47789999999999976
Q ss_pred EEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee-CCeEEEEE
Q 035748 240 HKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE-NGMVHGTA 310 (655)
Q Consensus 240 hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre-nGtl~G~a 310 (655)
..+. .+ +.++.+ .+...+|+.+.++.-| .+++++..+|.|++|.- .|..-.++
T Consensus 177 wd~~---~~--------~~~~~~-----~~h~~~V~~v~~~p~~--~~l~s~s~D~~i~~wd~~~~~~~~~~ 230 (410)
T 1vyh_C 177 WDFQ---GF--------ECIRTM-----HGHDHNVSSVSIMPNG--DHIVSASRDKTIKMWEVQTGYCVKTF 230 (410)
T ss_dssp EETT---SS--------CEEECC-----CCCSSCEEEEEECSSS--SEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EeCC---CC--------ceeEEE-----cCCCCCEEEEEEeCCC--CEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 5431 11 112233 1223468888776643 58999999999999986 46554454
No 6
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=98.13 E-value=0.00054 Score=62.28 Aligned_cols=126 Identities=9% Similarity=0.121 Sum_probs=91.3
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC--CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN--GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVIL 238 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~--GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~ 238 (655)
...|+|+..-|.. .-.+|+|+|...|.|.+++.. |..+......-..+|++| ++. .+...|+||..||.|.
T Consensus 39 ~~~v~~~~~~~~~---~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~-~~~---~~~~~l~s~~~dg~v~ 111 (368)
T 3mmy_A 39 DDSIGCLSFSPPT---LPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDV-CWS---DDGSKVFTASCDKTAK 111 (368)
T ss_dssp SSCEEEEEECCTT---SSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEE-EEC---TTSSEEEEEETTSEEE
T ss_pred CCceEEEEEcCCC---CCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEE-EEC---cCCCEEEEEcCCCcEE
Confidence 5778888887753 113799999999999999766 776656666668899984 432 4888999999999997
Q ss_pred EEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee-CCeEEEEE
Q 035748 239 IHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE-NGMVHGTA 310 (655)
Q Consensus 239 ~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre-nGtl~G~a 310 (655)
+..+.. +. ..+.+ ....+|+.+.++.-...++++++..+|.|+||.- ++......
T Consensus 112 iwd~~~---~~--------~~~~~------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 167 (368)
T 3mmy_A 112 MWDLSS---NQ--------AIQIA------QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVL 167 (368)
T ss_dssp EEETTT---TE--------EEEEE------ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEE
T ss_pred EEEcCC---CC--------ceeec------cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEE
Confidence 665432 11 00111 2346799988876677789999999999999985 45555555
No 7
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.08 E-value=0.008 Score=58.18 Aligned_cols=246 Identities=16% Similarity=0.171 Sum_probs=134.6
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILI 239 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~ 239 (655)
...|+|+...|. + ++++|...|.|.+++.+ |..+..+. ....+|++|.. +...+...|+||..||.|.+
T Consensus 162 ~~~V~~l~~~~~----~---~l~s~s~dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~--~~~~~~~~l~s~s~d~~i~v 231 (464)
T 3v7d_B 162 DGGVWALKYAHG----G---ILVSGSTDRTVRVWDIKKGCCTHVFE-GHNSTVRCLDI--VEYKNIKYIVTGSRDNTLHV 231 (464)
T ss_dssp SSCEEEEEECST----T---EEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEE--EESSSCEEEEEEETTSCEEE
T ss_pred CcCEEEEEEcCC----C---EEEEEeCCCCEEEEECCCCcEEEEEC-CCCCccEEEEE--ecCCCCCEEEEEcCCCcEEE
Confidence 456777776542 2 89999999999999766 77665554 45789998543 24467899999999999988
Q ss_pred EEEEecCC----CC--Ccchhh-hhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee-CCeEEEEEe
Q 035748 240 HKVYEKPN----GE--DWSSLV-IENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE-NGMVHGTAA 311 (655)
Q Consensus 240 hrV~Es~~----gd--D~~sLs-~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre-nGtl~G~aa 311 (655)
..+..... +. +..... ......+.-....+...+|+.+. ....+++++..+|.|+||.- ++......
T Consensus 232 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~l~~~~~d~~i~vwd~~~~~~~~~~- 306 (464)
T 3v7d_B 232 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS----GHGNIVVSGSYDNTLIVWDVAQMKCLYIL- 306 (464)
T ss_dssp EECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE----EETTEEEEEETTSCEEEEETTTTEEEEEE-
T ss_pred eeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc----CCCCEEEEEeCCCeEEEEECCCCcEEEEe-
Confidence 77654110 00 000000 00000000001122334566552 23468999999999999986 46666666
Q ss_pred ccCCCce---EEEee--eeeeeeecCccc-cccccCcccccccCCCCcccceeeeccccccceeeeeccCCcEEEEEEec
Q 035748 312 MLSSKPL---VFLKQ--RLLFLTECGAGS-LDLRTMKLRETECEGLNNSLVRNYVFDATERSKAYGYTSEGDLIHVLLLG 385 (655)
Q Consensus 312 ~~~Srpl---aFlkQ--rllfLTe~Gaas-lDLrtm~vr~~pCeGLN~S~i~syaFD~~~rsKaYG~T~~G~Li~v~l~g 385 (655)
.....++ +|-.. .++.-+..|.-. -|+++-+.... .++ ....+.+..|+. ....--..+|. |.+|=
T Consensus 307 ~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~-~~~-h~~~v~~~~~~~---~~l~s~s~dg~-v~vwd-- 378 (464)
T 3v7d_B 307 SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT-LQG-HTALVGLLRLSD---KFLVSAAADGS-IRGWD-- 378 (464)
T ss_dssp CCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEE-ECC-CSSCEEEEEECS---SEEEEEETTSE-EEEEE--
T ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE-EeC-CCCcEEEEEEcC---CEEEEEeCCCc-EEEEE--
Confidence 3333333 33332 333333333222 26665432211 111 223455666662 23333344554 44443
Q ss_pred CccccceEEeeeccccCCcccceeeeceeEEEEecceEEEEEeece
Q 035748 386 DVTNFKCRVRSKRKFDMSEPLAFQAIKGYLLVVCEEKIFVYNVSAQ 431 (655)
Q Consensus 386 D~~~~~CrVRs~~k~d~~~pvalqaIKGYlLvas~~~V~VyNvTsq 431 (655)
.....+..... .-.....+++..-..||++++...|.+||+.+.
T Consensus 379 -~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g 422 (464)
T 3v7d_B 379 -ANDYSRKFSYH-HTNLSAITTFYVSDNILVSGSENQFNIYNLRSG 422 (464)
T ss_dssp -TTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEETTEEEEEETTTC
T ss_pred -CCCCceeeeec-CCCCccEEEEEeCCCEEEEecCCeEEEEECCCC
Confidence 33333332221 111233445555556777778889999999874
No 8
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=98.06 E-value=0.0021 Score=60.74 Aligned_cols=234 Identities=15% Similarity=0.166 Sum_probs=134.9
Q ss_pred ccceeeeccCCCCCCcceeEEeecccceEEEEccCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEE
Q 035748 163 DPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKV 242 (655)
Q Consensus 163 ~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV 242 (655)
+++++.+.+.. .+++|+|...|.|.+++.+..........-..+|++| ++. .+..+|+||..||.|.+..+
T Consensus 98 ~~~~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~-~~~---~~~~~l~s~s~d~~i~iwd~ 168 (420)
T 3vl1_A 98 DYTAVDTAKLQ-----MRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKL-KFF---PSGEALISSSQDMQLKIWSV 168 (420)
T ss_dssp CEEEEEEECSS-----SCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEE-EEC---TTSSEEEEEETTSEEEEEET
T ss_pred CceEEEEEecC-----CCEEEEEECCCCEEEEeCCCcceeeecccccCccEEE-EEC---CCCCEEEEEeCCCeEEEEeC
Confidence 45555555443 2689999999999999887555566656678899994 443 47779999999999876654
Q ss_pred EecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee-CCeEEEEEeccC---C---
Q 035748 243 YEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE-NGMVHGTAAMLS---S--- 315 (655)
Q Consensus 243 ~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre-nGtl~G~aa~~~---S--- 315 (655)
.. +. ..+.+ .....+|+.+.++. ..++++++..+|.|++|.- .+..-... ... .
T Consensus 169 ~~---~~--------~~~~~-----~~h~~~v~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~~~~~~~~~v 229 (420)
T 3vl1_A 169 KD---GS--------NPRTL-----IGHRATVTDIAIID--RGRNVLSASLDGTIRLWECGTGTTIHTF-NRKENPHDGV 229 (420)
T ss_dssp TT---CC--------CCEEE-----ECCSSCEEEEEEET--TTTEEEEEETTSCEEEEETTTTEEEEEE-CBTTBTTCCE
T ss_pred CC---Cc--------CceEE-----cCCCCcEEEEEEcC--CCCEEEEEcCCCcEEEeECCCCceeEEe-ecCCCCCCCc
Confidence 32 11 11223 12345788888775 3468999999999999986 46666555 211 1
Q ss_pred CceEEE---------------------e--eeeeeeeecCcc-ccccccCcccccccCCCCcccceeeeccccccceeee
Q 035748 316 KPLVFL---------------------K--QRLLFLTECGAG-SLDLRTMKLRETECEGLNNSLVRNYVFDATERSKAYG 371 (655)
Q Consensus 316 rplaFl---------------------k--QrllfLTe~Gaa-slDLrtm~vr~~pCeGLN~S~i~syaFD~~~rsKaYG 371 (655)
..++|. . +.++.-+..|.- ..|+++.+....--. -....+.+.+|++..+...+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~ 308 (420)
T 3vl1_A 230 NSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPS-KFTCSCNSLTVDGNNANYIYA 308 (420)
T ss_dssp EEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECC-TTSSCEEEEEECSSCTTEEEE
T ss_pred cEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccc-ccCCCceeEEEeCCCCCEEEE
Confidence 122221 1 123333333322 236766442222111 123457788888877655555
Q ss_pred eccCCcEEEEEEecCccccceEEeeeccccCCccc-ceeeece-eEEEEec-ceEEEEEeec
Q 035748 372 YTSEGDLIHVLLLGDVTNFKCRVRSKRKFDMSEPL-AFQAIKG-YLLVVCE-EKIFVYNVSA 430 (655)
Q Consensus 372 ~T~~G~Li~v~l~gD~~~~~CrVRs~~k~d~~~pv-alqaIKG-YlLvas~-~~V~VyNvTs 430 (655)
-+.+|. |++| |....+|.+..... ....++ .+..-.| ||+.++. ..|.+|+++.
T Consensus 309 g~~dg~-i~vw---d~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 309 GYENGM-LAQW---DLRSPECPVGEFLI-NEGTPINNVYFAAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp EETTSE-EEEE---ETTCTTSCSEEEEE-STTSCEEEEEEETTEEEEEETTTEEEEEEEECC
T ss_pred EeCCCe-EEEE---EcCCCcCchhhhhc-cCCCCceEEEeCCCCEEEEecCCccEEEEeccC
Confidence 566664 3444 33333332222111 012222 2222234 5555554 5699999887
No 9
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=98.05 E-value=0.0034 Score=65.07 Aligned_cols=157 Identities=14% Similarity=0.114 Sum_probs=101.2
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILI 239 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~ 239 (655)
...++|+..-|. .+++++|+..|.|.+++.+ |.......+....+|+.+ ++. . .+...|++|+.||.|.+
T Consensus 97 ~~~v~~~~~s~~------~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~-~~~-p-~~~~~l~~~~~dg~v~v 167 (814)
T 3mkq_A 97 PDYIRSIAVHPT------KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCV-AFN-P-KDPSTFASGCLDRTVKV 167 (814)
T ss_dssp SSCEEEEEECSS------SSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEE-EEE-T-TEEEEEEEEETTSEEEE
T ss_pred CCCEEEEEEeCC------CCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEE-EEE-c-CCCCEEEEEeCCCeEEE
Confidence 566788877774 3489999999999999766 435555556668899984 432 2 26789999999999876
Q ss_pred EEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee-CCeEEEEEeccCCCce
Q 035748 240 HKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE-NGMVHGTAAMLSSKPL 318 (655)
Q Consensus 240 hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre-nGtl~G~aa~~~Srpl 318 (655)
..+.. +.- ...+ ......+|..+.++..+..++++++..+|.|.+|+- ++...-+. .....++
T Consensus 168 wd~~~---~~~--------~~~~----~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~v 231 (814)
T 3mkq_A 168 WSLGQ---STP--------NFTL----TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-EGHMSNV 231 (814)
T ss_dssp EETTC---SSC--------SEEE----ECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEE-ECCSSCE
T ss_pred EECCC---Ccc--------eeEE----ecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE-cCCCCCE
Confidence 65421 111 1111 122335677777877778889999999999999985 56665555 3333444
Q ss_pred EEE---e--eeeeeeeecCcc-ccccccCc
Q 035748 319 VFL---K--QRLLFLTECGAG-SLDLRTMK 342 (655)
Q Consensus 319 aFl---k--QrllfLTe~Gaa-slDLrtm~ 342 (655)
..+ . +.++.-++.|.- ..|+.+.+
T Consensus 232 ~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~ 261 (814)
T 3mkq_A 232 SFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261 (814)
T ss_dssp EEEEECSSSSEEEEEETTSCEEEEETTTCS
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 333 3 233333434432 23666544
No 10
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=98.01 E-value=0.0041 Score=59.67 Aligned_cols=152 Identities=14% Similarity=0.181 Sum_probs=101.3
Q ss_pred cccccceeeeee-ec-CCccceeeeccCCCCCCcceeEEeecccceEEEEccC----Cc---eEEEEecCCCCCeeEEEE
Q 035748 147 FWSERFQFVSAV-KL-ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN----GD---VSVEFYTMSELPVTAMVS 217 (655)
Q Consensus 147 ~WSerF~fvSAv-kl-da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~----GD---vl~E~~T~~~spVTAm~S 217 (655)
.|.-.-+++.-+ +- ...|+|+.+-|.. .+|+|.|...|.|.|++.. |. ....+ .-..+|++| +
T Consensus 47 ~w~~~g~~~~~~~~~h~~~V~~~~~s~~~-----~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~--~h~~~v~~~-~ 118 (437)
T 3gre_A 47 MGNLRGKLIATLMENEPNSITSSAVSPGE-----TPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY--DCSSTVTQI-T 118 (437)
T ss_dssp GGGCCCCEEEEECTTTTSCEEEEEEECSS-----SCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE--ECSSCEEEE-E
T ss_pred cccccceEEeeeccCCCCceEEEEECCCC-----CCEEEEecCCceEEEeECcccccCcccceeeec--cCCCCEEEE-E
Confidence 487777777766 33 4789999998842 3599999999999999654 32 12222 246789984 4
Q ss_pred eeeeecceeEEEeeecCceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcE
Q 035748 218 YVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKI 297 (655)
Q Consensus 218 YlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV 297 (655)
+. .+...|++|..||.|.+.++.....+.-...+....++.+.....+ ....++.+..+--....+++++..+|.|
T Consensus 119 ~~---~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i 194 (437)
T 3gre_A 119 MI---PNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFG-KNEYAVRMRAFVNEEKSLLVALTNLSRV 194 (437)
T ss_dssp EC---TTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGS-SCCCEEEEEEEECSSCEEEEEEETTSEE
T ss_pred Ee---CCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcc-cccCceEEEEEEcCCCCEEEEEeCCCeE
Confidence 33 4788999999999999999875333332222222223333211111 4456777776666677899999999999
Q ss_pred EEEee-CCeEEEEE
Q 035748 298 RVFKE-NGMVHGTA 310 (655)
Q Consensus 298 ~VFre-nGtl~G~a 310 (655)
++|.- .+..-.+.
T Consensus 195 ~iwd~~~~~~~~~~ 208 (437)
T 3gre_A 195 IIFDIRTLERLQII 208 (437)
T ss_dssp EEEETTTCCEEEEE
T ss_pred EEEeCCCCeeeEEE
Confidence 99987 46655555
No 11
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=98.00 E-value=0.0018 Score=59.25 Aligned_cols=120 Identities=18% Similarity=0.160 Sum_probs=82.9
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC---CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN---GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVI 237 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~---GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V 237 (655)
...|+|+..-|. .+|+|+|...|.|.+++.+ +..+..+ ..-..+|++| ++. .-.+..+|+||..||.|
T Consensus 11 ~~~v~~~~~s~~------~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~~-~~~-~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 11 NELIHDAVLDYY------GKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRV-DWA-HPKFGTILASCSYDGKV 81 (379)
T ss_dssp CCCEEEEEECSS------SSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEE-EEC-CGGGCSEEEEEETTSCE
T ss_pred cccEEEEEEcCC------CCEEEEEECCCcEEEEecCCCcceeeeEe-cCCCCcEEEE-EeC-CCCCCCEEEEeccCCEE
Confidence 467888887763 3699999999999999765 3333333 4457899984 442 33458899999999999
Q ss_pred EEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC
Q 035748 238 LIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN 303 (655)
Q Consensus 238 ~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren 303 (655)
.+..+... .|. ....+ .....+|+.+.++.-....+++++..+|.|.||.-.
T Consensus 82 ~iwd~~~~----~~~-----~~~~~-----~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~ 133 (379)
T 3jrp_A 82 LIWKEENG----RWS-----QIAVH-----AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 133 (379)
T ss_dssp EEEEEETT----EEE-----EEEEE-----CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred EEEEcCCC----cee-----Eeeee-----cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecC
Confidence 88776541 110 11111 123457888877766435789999999999999864
No 12
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=98.00 E-value=0.0019 Score=57.49 Aligned_cols=124 Identities=8% Similarity=0.130 Sum_probs=84.6
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-Cc---eEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCce
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GD---VSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGV 236 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GD---vl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~ 236 (655)
...|+|+..-|. .+|+|+|...|.|.+++.+ +. .+......-..+|++| ++. ...+..+|+||..||.
T Consensus 11 ~~~v~~~~~~~~------~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~d~~~l~s~~~dg~ 82 (351)
T 3f3f_A 11 DDLVHDVVYDFY------GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAI-DWA-SPEYGRIIASASYDKT 82 (351)
T ss_dssp SSCEEEEEECSS------SSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEE-EEC-CGGGCSEEEEEETTSC
T ss_pred ccceeEEEEcCC------CCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEE-EEc-CCCCCCEEEEEcCCCe
Confidence 457888888773 3599999999999999766 32 2222234557899994 443 3336889999999999
Q ss_pred EEEEEEEecC---CCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee
Q 035748 237 ILIHKVYEKP---NGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE 302 (655)
Q Consensus 237 V~~hrV~Es~---~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre 302 (655)
|.+..+.... .+..|. ....+ .....+|+.+.++.-....+++++..+|.|.+|+-
T Consensus 83 v~vwd~~~~~~~~~~~~~~-----~~~~~-----~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~ 141 (351)
T 3f3f_A 83 VKLWEEDPDQEECSGRRWN-----KLCTL-----NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDA 141 (351)
T ss_dssp EEEEEECTTSCTTSSCSEE-----EEEEE-----CCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEEC
T ss_pred EEEEecCCCcccccccCcc-----eeeee-----cccCCceeEEEEcCCCCCcEEEEecCCCcEEEecC
Confidence 9887775411 111111 11112 23346788888776644679999999999999984
No 13
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.98 E-value=0.011 Score=57.11 Aligned_cols=218 Identities=13% Similarity=0.184 Sum_probs=124.3
Q ss_pred eeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEecCCCCCcchhhhhh
Q 035748 180 KYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWSSLVIEN 258 (655)
Q Consensus 180 kY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~ 258 (655)
.|+++|...|.|.+++.. |..+.++. +-..+|++| ++. .+. .|+||..||.|.+..+.. +. .
T Consensus 133 ~~l~sgs~dg~i~vwd~~~~~~~~~~~-~h~~~V~~l-~~~---~~~-~l~s~s~dg~i~vwd~~~---~~--------~ 195 (464)
T 3v7d_B 133 NYVITGADDKMIRVYDSINKKFLLQLS-GHDGGVWAL-KYA---HGG-ILVSGSTDRTVRVWDIKK---GC--------C 195 (464)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEE-EEC---STT-EEEEEETTSCEEEEETTT---TE--------E
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEEEe-CCCcCEEEE-EEc---CCC-EEEEEeCCCCEEEEECCC---Cc--------E
Confidence 499999999999999755 88777665 457899985 432 233 999999999998765421 11 1
Q ss_pred ccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeCC-e-----------------------EEEEEeccC
Q 035748 259 VGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKENG-M-----------------------VHGTAAMLS 314 (655)
Q Consensus 259 ~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFrenG-t-----------------------l~G~aa~~~ 314 (655)
.+.+ .....+|+.+.+.......+++++..+|.|.+|+-+. . +.+.. ...
T Consensus 196 ~~~~-----~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 269 (464)
T 3v7d_B 196 THVF-----EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL-RGH 269 (464)
T ss_dssp EEEE-----CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE-CCC
T ss_pred EEEE-----CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc-cCc
Confidence 1223 1345689999888878889999999999999998742 1 12222 222
Q ss_pred CCceEEEe---eeeeeeeecCcccc-ccccCcccccccCCCCcccceeeeccccccceeeeeccCCcEEEEEEecCcccc
Q 035748 315 SKPLVFLK---QRLLFLTECGAGSL-DLRTMKLRETECEGLNNSLVRNYVFDATERSKAYGYTSEGDLIHVLLLGDVTNF 390 (655)
Q Consensus 315 SrplaFlk---QrllfLTe~Gaasl-DLrtm~vr~~pCeGLN~S~i~syaFD~~~rsKaYG~T~~G~Li~v~l~gD~~~~ 390 (655)
..++..+. +.++.-++.|.-.+ |+++.+....- .+ ....+.+.+|++...--+. -+.+|. |++| |...-
T Consensus 270 ~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~s-g~~dg~-i~vw---d~~~~ 342 (464)
T 3v7d_B 270 MASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL-SG-HTDRIYSTIYDHERKRCIS-ASMDTT-IRIW---DLENG 342 (464)
T ss_dssp SSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEE-CC-CSSCEEEEEEETTTTEEEE-EETTSC-EEEE---ETTTT
T ss_pred cceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cC-CCCCEEEEEEcCCCCEEEE-EeCCCc-EEEE---ECCCC
Confidence 22222221 22333333333222 66665432221 11 2344666777765443222 233343 4444 22223
Q ss_pred ceEEeeeccccCCccc-ceeeeceeEEEEecc-eEEEEEeec
Q 035748 391 KCRVRSKRKFDMSEPL-AFQAIKGYLLVVCEE-KIFVYNVSA 430 (655)
Q Consensus 391 ~CrVRs~~k~d~~~pv-alqaIKGYlLvas~~-~V~VyNvTs 430 (655)
+|...-.. ...++ +++--..||+.++.+ .|.+||+.+
T Consensus 343 ~~~~~~~~---h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~ 381 (464)
T 3v7d_B 343 ELMYTLQG---HTALVGLLRLSDKFLVSAAADGSIRGWDAND 381 (464)
T ss_dssp EEEEEECC---CSSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred cEEEEEeC---CCCcEEEEEEcCCEEEEEeCCCcEEEEECCC
Confidence 33222111 22233 333334577777764 799999876
No 14
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.92 E-value=0.011 Score=53.15 Aligned_cols=270 Identities=13% Similarity=0.086 Sum_probs=148.0
Q ss_pred ecCCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEec----CCCCCeeEEEEeeeeecceeEEEeeec
Q 035748 159 KLESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYT----MSELPVTAMVSYVSVYKNESVLVTGHE 233 (655)
Q Consensus 159 klda~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T----~~~spVTAm~SYlsvrRNeT~lVTGHa 233 (655)
.-...|+|+..-|. .+|+++|. .|.|.+++.+ +.......+ ....+|++| ++. .+...|++|..
T Consensus 49 ~h~~~v~~~~~~~~------~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~---~~~~~l~~~~~ 117 (337)
T 1gxr_A 49 NHGEVVCAVTISNP------TRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSC-KLL---PDGCTLIVGGE 117 (337)
T ss_dssp CCSSCCCEEEECSS------SSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEE-EEC---TTSSEEEEEES
T ss_pred cCCCceEEEEEecC------CcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEE-EEc---CCCCEEEEEcC
Confidence 44678888888763 36899998 8999999765 432222221 456788884 332 47889999999
Q ss_pred CceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee-CCeEEEEEec
Q 035748 234 NGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE-NGMVHGTAAM 312 (655)
Q Consensus 234 dG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre-nGtl~G~aa~ 312 (655)
||.|.+..+.. +. . .....+ .....+|+.+.+.. ..++++++..+|.|.+|.- ++...... .
T Consensus 118 d~~i~~~d~~~---~~-~-----~~~~~~-----~~~~~~i~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~~-~ 180 (337)
T 1gxr_A 118 ASTLSIWDLAA---PT-P-----RIKAEL-----TSSAPACYALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQF-Q 180 (337)
T ss_dssp SSEEEEEECCC---C--------EEEEEE-----ECSSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEE-C
T ss_pred CCcEEEEECCC---CC-c-----ceeeec-----ccCCCceEEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeee-e
Confidence 99998776532 11 0 001111 12334677777665 4468999999999999986 56766666 3
Q ss_pred cCCCceE---EEe--eeeeeeeecCccc-cccccCcccccccCCCCcccceeeeccccccceeeeeccCCcEEEEEEecC
Q 035748 313 LSSKPLV---FLK--QRLLFLTECGAGS-LDLRTMKLRETECEGLNNSLVRNYVFDATERSKAYGYTSEGDLIHVLLLGD 386 (655)
Q Consensus 313 ~~Srpla---Flk--QrllfLTe~Gaas-lDLrtm~vr~~pCeGLN~S~i~syaFD~~~rsKaYG~T~~G~Li~v~l~gD 386 (655)
....++. |-. +.++.-+..|.-. .|+++.+....- . ....+.+.+|.+...--+.| +.+|. |+++=.-
T Consensus 181 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~--~-~~~~v~~~~~s~~~~~l~~~-~~~~~-i~~~~~~- 254 (337)
T 1gxr_A 181 GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH--D-FTSQIFSLGYCPTGEWLAVG-MESSN-VEVLHVN- 254 (337)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE--E-CSSCEEEEEECTTSSEEEEE-ETTSC-EEEEETT-
T ss_pred cccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee--c-CCCceEEEEECCCCCEEEEE-cCCCc-EEEEECC-
Confidence 3334433 332 2444444444332 277665432221 1 13346667776665443333 22333 3333221
Q ss_pred ccccceEEeeeccccCCc-ccceeee--ceeEEEEec-ceEEEEEeeceeeeccCCCccccccChHHHHHhhcccccccc
Q 035748 387 VTNFKCRVRSKRKFDMSE-PLAFQAI--KGYLLVVCE-EKIFVYNVSAQHYVRSGGPRLLFSAGLDEIRSSFLNYQVMDV 462 (655)
Q Consensus 387 ~~~~~CrVRs~~k~d~~~-pvalqaI--KGYlLvas~-~~V~VyNvTsq~y~Rv~~PR~Lfsa~L~~i~s~Fl~~~~~~~ 462 (655)
..++. .. ...+. ...++-- ..||+.++. ..|.+||+.+.. .++.. ...
T Consensus 255 --~~~~~-~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~--------~~~~~----------~~~---- 306 (337)
T 1gxr_A 255 --KPDKY-QL---HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA--------SIFQS----------KES---- 306 (337)
T ss_dssp --SSCEE-EE---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--------EEEEE----------ECS----
T ss_pred --CCCeE-EE---cCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCe--------EEEEe----------cCC----
Confidence 11111 11 11222 2222222 346666665 469999987732 11110 000
Q ss_pred ccccccccCCceEEecCCceEEEeeCCcEEEEEe
Q 035748 463 DVNDEKRRSVPLIASDRDKLLVLGLGGGYVGMYR 496 (655)
Q Consensus 463 ~~~~~~~a~~PLIASdRekLVVlglgdGyVa~Yr 496 (655)
....-+.-+..+++++.+-.||.|-+|+
T Consensus 307 ------~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 307 ------SSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp ------SCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred ------CcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 0011123344556788888999999886
No 15
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=97.92 E-value=0.0022 Score=58.43 Aligned_cols=123 Identities=7% Similarity=0.064 Sum_probs=87.5
Q ss_pred cCCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEE
Q 035748 160 LESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVIL 238 (655)
Q Consensus 160 lda~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~ 238 (655)
.+..++|+..-|....+ .+++++|...|.|.+++.+ |..+..+. ....+|++| ++. . .+..+|++|..||.|.
T Consensus 68 ~~~~v~~~~~~~~~~~~--~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~i~~~-~~~-~-~~~~~l~s~~~dg~i~ 141 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTS--HPLLAVAGSRGIIRIINPITMQCIKHYV-GHGNAINEL-KFH-P-RDPNLLLSVSKDHALR 141 (366)
T ss_dssp TTCCEEEEEEEECTTTC--CEEEEEEETTCEEEEECTTTCCEEEEEE-SCCSCEEEE-EEC-S-SCTTEEEEEETTSCEE
T ss_pred CCCcEEEEEeccCCCCC--CCEEEEecCCCEEEEEEchhceEeeeec-CCCCcEEEE-EEC-C-CCCCEEEEEeCCCeEE
Confidence 35678899888865433 3699999999999999766 88777765 457899984 432 2 2778999999999998
Q ss_pred EEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC
Q 035748 239 IHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN 303 (655)
Q Consensus 239 ~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren 303 (655)
+..+.. +. ....+ ........+|+.+.++. ..++++++..+|.|.+|.-.
T Consensus 142 iwd~~~---~~--------~~~~~--~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~ 191 (366)
T 3k26_A 142 LWNIQT---DT--------LVAIF--GGVEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRIN 191 (366)
T ss_dssp EEETTT---TE--------EEEEE--CSTTSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESC
T ss_pred EEEeec---Ce--------EEEEe--cccccccCceeEEEECC--CCCEEEEecCCCCEEEEECC
Confidence 766532 11 11111 00123456788887776 44689999999999999864
No 16
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=97.90 E-value=0.0076 Score=59.73 Aligned_cols=120 Identities=17% Similarity=0.258 Sum_probs=87.4
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIH 240 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~h 240 (655)
...|+|+.+-| +| +|+|+|...|.|.|.+.+|.++..+. +-..+|++| ++. .+..+|+||..||.|.+.
T Consensus 16 ~~~V~~~a~sp----dg--~~las~~~d~~v~iWd~~~~~~~~l~-gh~~~V~~l-~fs---pdg~~las~~~d~~i~vW 84 (577)
T 2ymu_A 16 SSSVRGVAFSP----DG--QTIASASDDKTVKLWNRNGQLLQTLT-GHSSSVWGV-AFS---PDGQTIASASDDKTVKLW 84 (577)
T ss_dssp SSCEEEEEECT----TS--SCEEEEETTSEEEEECTTSCEEEEEE-CCSSCEEEE-EEC---TTSSEEEEEETTSCEEEE
T ss_pred CCcEEEEEECC----CC--CEEEEEeCCCEEEEEECCCCEEEEEe-CCCCCEEEE-EEC---CCCCEEEEEeCCCEEEEE
Confidence 46789998877 23 69999999999999999999877765 446799984 442 478899999999998654
Q ss_pred EEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeCCeEEEEE
Q 035748 241 KVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKENGMVHGTA 310 (655)
Q Consensus 241 rV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFrenGtl~G~a 310 (655)
. .++. .++.+. ....+|+.+.+.. ..++++++..+|.++++...+......
T Consensus 85 ---d-~~~~--------~~~~~~-----~~~~~v~~~~~s~--d~~~l~~~~~d~~~~~~~~~~~~~~~~ 135 (577)
T 2ymu_A 85 ---N-RNGQ--------LLQTLT-----GHSSSVRGVAFSP--DGQTIASASDDKTVKLWNRNGQLLQTL 135 (577)
T ss_dssp ---E-TTSC--------EEEEEC-----CCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTCCEEEEE
T ss_pred ---E-CCCC--------EEEEEE-----CCCCCEEEEEECC--CCCEEEEEcCCCceeecccccceeeec
Confidence 3 1221 122231 2235788877764 456899999999999999876655554
No 17
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=97.84 E-value=0.0093 Score=56.20 Aligned_cols=239 Identities=11% Similarity=0.083 Sum_probs=134.7
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccCCceEEEEecCC--CCCeeEEEEeeeeecceeEEEeeecCceEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRNGDVSVEFYTMS--ELPVTAMVSYVSVYKNESVLVTGHENGVIL 238 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~GDvl~E~~T~~--~spVTAm~SYlsvrRNeT~lVTGHadG~V~ 238 (655)
...|+|+...|.. .+++++|...|.|.+++..+..+..+.... ..+|+++ ++ ..+..+|++|..||.|.
T Consensus 118 ~~~v~~~~~~~~~-----~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~-~~---~~~~~~l~~~~~d~~i~ 188 (383)
T 3ei3_B 118 GDAITGMKFNQFN-----TNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCV-DV---SVSRQMLATGDSTGRLL 188 (383)
T ss_dssp TCBEEEEEEETTE-----EEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEE-EE---ETTTTEEEEEETTSEEE
T ss_pred CCceeEEEeCCCC-----CCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEE-EE---CCCCCEEEEECCCCCEE
Confidence 5677787777642 479999999999999998887766665433 4778884 43 24778999999999998
Q ss_pred EEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC-----CeEEEEEe-c
Q 035748 239 IHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN-----GMVHGTAA-M 312 (655)
Q Consensus 239 ~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren-----Gtl~G~aa-~ 312 (655)
+..+ + +. .+..+. ....+|+.+.+..-|+ .+++++..+|.|++|.-. +.+..... .
T Consensus 189 i~d~-~---~~--------~~~~~~-----~h~~~v~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 250 (383)
T 3ei3_B 189 LLGL-D---GH--------EIFKEK-----LHKAKVTHAEFNPRCD-WLMATSSVDATVKLWDLRNIKDKNSYIAEMPHE 250 (383)
T ss_dssp EEET-T---SC--------EEEEEE-----CSSSCEEEEEECSSCT-TEEEEEETTSEEEEEEGGGCCSTTCEEEEEECS
T ss_pred EEEC-C---CC--------EEEEec-----cCCCcEEEEEECCCCC-CEEEEEeCCCEEEEEeCCCCCcccceEEEecCC
Confidence 8775 1 11 112221 2235788877765442 288899999999999874 45544441 1
Q ss_pred cCCCceEEEe-e--eeeeeeecCcccc-ccccCccc----ccccCCCCcccceeeeccccccceeeeeccCCcE------
Q 035748 313 LSSKPLVFLK-Q--RLLFLTECGAGSL-DLRTMKLR----ETECEGLNNSLVRNYVFDATERSKAYGYTSEGDL------ 378 (655)
Q Consensus 313 ~~SrplaFlk-Q--rllfLTe~Gaasl-DLrtm~vr----~~pCeGLN~S~i~syaFD~~~rsKaYG~T~~G~L------ 378 (655)
....-++|-. . .++.-+..|.-.+ |+++.+.. ..++....+.......|.+...--+.++..+|.+
T Consensus 251 ~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~ 330 (383)
T 3ei3_B 251 KPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKR 330 (383)
T ss_dssp SCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCCC
T ss_pred CceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCcccccCCCC
Confidence 1122344444 2 3333333232222 76664431 1222223344444556666555555566544433
Q ss_pred -EEEEEecCccccceEEeeeccccCCcccce---eeeceeEEEEecceEEEEEeec
Q 035748 379 -IHVLLLGDVTNFKCRVRSKRKFDMSEPLAF---QAIKGYLLVVCEEKIFVYNVSA 430 (655)
Q Consensus 379 -i~v~l~gD~~~~~CrVRs~~k~d~~~pval---qaIKGYlLvas~~~V~VyNvTs 430 (655)
|.+| |...-+|...-... .....+.. ..-.-||+.++...|.+|++.+
T Consensus 331 ~i~iw---d~~~~~~~~~l~~~-~~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~~~ 382 (383)
T 3ei3_B 331 TIDIY---DANSGGLVHQLRDP-NAAGIISLNKFSPTGDVLASGMGFNILIWNRED 382 (383)
T ss_dssp CEEEE---ETTTCCEEEEECBT-TBCSCCCEEEECTTSSEEEEEETTEEEEEECC-
T ss_pred eEEEE---ecCCCceeeeecCC-CCCceEEEEEEecCccEEEEecCCcEEEEecCC
Confidence 2222 22222221111110 12333333 2223466667767899999875
No 18
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.83 E-value=0.003 Score=60.84 Aligned_cols=232 Identities=14% Similarity=0.108 Sum_probs=132.8
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILI 239 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~ 239 (655)
+..|+|+..-|. .+|+|+|...|.|.+++.+ |..+..+. ....+|+++ ++ +...|++|..||.|.+
T Consensus 134 ~~~v~~v~~s~~------~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~-~~-----~~~~l~~~~~dg~i~i 200 (401)
T 4aez_A 134 STYVASVKWSHD------GSFLSVGLGNGLVDIYDVESQTKLRTMA-GHQARVGCL-SW-----NRHVLSSGSRSGAIHH 200 (401)
T ss_dssp TCCEEEEEECTT------SSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEE-EE-----ETTEEEEEETTSEEEE
T ss_pred CCCEEEEEECCC------CCEEEEECCCCeEEEEECcCCeEEEEec-CCCCceEEE-EE-----CCCEEEEEcCCCCEEE
Confidence 667888888882 3699999999999999766 77666665 557889884 33 5679999999999998
Q ss_pred EEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC-CeEEEEEeccC---C
Q 035748 240 HKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN-GMVHGTAAMLS---S 315 (655)
Q Consensus 240 hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren-Gtl~G~aa~~~---S 315 (655)
+.+.... .....+ .....+|+.+.++. ..++++++..+|.|+||.-. +...-.. ... .
T Consensus 201 ~d~~~~~----------~~~~~~-----~~~~~~v~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~~~~~~v 262 (401)
T 4aez_A 201 HDVRIAN----------HQIGTL-----QGHSSEVCGLAWRS--DGLQLASGGNDNVVQIWDARSSIPKFTK-TNHNAAV 262 (401)
T ss_dssp EETTSSS----------CEEEEE-----ECCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTCSSEEEEE-CCCSSCC
T ss_pred EecccCc----------ceeeEE-----cCCCCCeeEEEEcC--CCCEEEEEeCCCeEEEccCCCCCccEEe-cCCcceE
Confidence 8764210 001122 12345788887776 55799999999999999874 4444333 222 3
Q ss_pred CceEEEe-eeeeeeeec----C-ccccccccCcccccccCCCCcccceeeeccccccceeeeec-cCCcEEEEEEecCcc
Q 035748 316 KPLVFLK-QRLLFLTEC----G-AGSLDLRTMKLRETECEGLNNSLVRNYVFDATERSKAYGYT-SEGDLIHVLLLGDVT 388 (655)
Q Consensus 316 rplaFlk-QrllfLTe~----G-aaslDLrtm~vr~~pCeGLN~S~i~syaFD~~~rsKaYG~T-~~G~Li~v~l~gD~~ 388 (655)
..++|-. +.-++.+.. | +-..|+++.+....-- .++.+.+.+|.+..+--+..-. .+| -|++|=.-..
T Consensus 263 ~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~g~~dg-~i~v~~~~~~- 337 (401)
T 4aez_A 263 KAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD---AGSQVTSLIWSPHSKEIMSTHGFPDN-NLSIWSYSSS- 337 (401)
T ss_dssp CEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE---CSSCEEEEEECSSSSEEEEEECTTTC-EEEEEEEETT-
T ss_pred EEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe---CCCcEEEEEECCCCCeEEEEeecCCC-cEEEEecCCc-
Confidence 3455554 333333322 2 2222666544222111 2356777777776555444222 233 3343322111
Q ss_pred ccceEEeeeccccCCc-cc--ceeeeceeEEEEec-ceEEEEEeece
Q 035748 389 NFKCRVRSKRKFDMSE-PL--AFQAIKGYLLVVCE-EKIFVYNVSAQ 431 (655)
Q Consensus 389 ~~~CrVRs~~k~d~~~-pv--alqaIKGYlLvas~-~~V~VyNvTsq 431 (655)
...+...-. .... .. ++..-.-||+.++. ..|.+||+.+.
T Consensus 338 ~~~~~~~~~---~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 338 GLTKQVDIP---AHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp EEEEEEEEE---CCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-
T ss_pred cceeEEEec---CCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 011111111 1222 22 22222336666665 56999999874
No 19
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=97.79 E-value=0.036 Score=54.96 Aligned_cols=141 Identities=16% Similarity=0.244 Sum_probs=91.9
Q ss_pred cccccceeeeeeec-CCccceeeeccCCCCCCcceeEEeecccceEEEEccCCceEEEEecCCCCCeeEEEEeeeeecce
Q 035748 147 FWSERFQFVSAVKL-ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRNGDVSVEFYTMSELPVTAMVSYVSVYKNE 225 (655)
Q Consensus 147 ~WSerF~fvSAvkl-da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~GDvl~E~~T~~~spVTAm~SYlsvrRNe 225 (655)
.|....+.+..++- ...++++.+.|- .+++++|...|.|.++..+|..+..+. +-..+|+++ ++ ..+.
T Consensus 247 ~w~~~~~~~~~~~~~~~~v~~v~~~~d------~~~l~~~~~d~~i~~w~~~~~~~~~~~-~h~~~v~~~-~~---~~~~ 315 (577)
T 2ymu_A 247 LWNRNGQLLQTLTGHSSSVNGVAFRPD------GQTIASASDDKTVKLWNRNGQLLQTLT-GHSSSVWGV-AF---SPDG 315 (577)
T ss_dssp EECTTSCEEEEECCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTSCEEEEEC-CCSSCEEEE-EE---CTTS
T ss_pred EEeCCCCEEEEEecCCCCEEEEEEcCC------CCEEEEEeCCCEEEEEeCCCcEEEEEe-cCCCCeEEE-EE---CCCC
Confidence 35443344333322 456677766653 358999999999999999998766554 457789884 33 2477
Q ss_pred eEEEeeecCceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeCCe
Q 035748 226 SVLVTGHENGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKENGM 305 (655)
Q Consensus 226 T~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFrenGt 305 (655)
..|+||..||.|. ||.. ++. ..+.+ .....+|+.+.+.. ..++++++..+|.|++|..+|.
T Consensus 316 ~~l~t~~~d~~i~---~w~~-~~~--------~~~~~-----~~~~~~v~~~~~s~--~g~~l~~~~~dg~v~~~~~~~~ 376 (577)
T 2ymu_A 316 QTIASASDDKTVK---LWNR-NGQ--------HLQTL-----TGHSSSVWGVAFSP--DGQTIASASDDKTVKLWNRNGQ 376 (577)
T ss_dssp SEEEEEETTSCEE---EEET-TSC--------EEEEE-----CCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTCC
T ss_pred CEEEEEeCCCeEE---EEeC-CCC--------eeEEE-----eCCCCCEEEEEECC--CCCEEEEEeCCCEEEEEcCCCC
Confidence 8999999999985 4541 111 11222 12234677765543 3458999999999999999888
Q ss_pred EEEEEeccCCCce
Q 035748 306 VHGTAAMLSSKPL 318 (655)
Q Consensus 306 l~G~aa~~~Srpl 318 (655)
+.-+. .....++
T Consensus 377 ~~~~~-~~~~~~v 388 (577)
T 2ymu_A 377 LLQTL-TGHSSSV 388 (577)
T ss_dssp EEEEE-ECCSSCE
T ss_pred EEEEe-cCCCCCe
Confidence 77766 4433333
No 20
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=97.77 E-value=0.0077 Score=56.48 Aligned_cols=253 Identities=11% Similarity=0.049 Sum_probs=136.7
Q ss_pred eeeeecCCccceeeeccCCCCCCcceeEEeecccceEEEEccCC----ceEEEEecCCCCCeeEEEEeeeeecceeEEEe
Q 035748 155 VSAVKLESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRNG----DVSVEFYTMSELPVTAMVSYVSVYKNESVLVT 230 (655)
Q Consensus 155 vSAvklda~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~G----Dvl~E~~T~~~spVTAm~SYlsvrRNeT~lVT 230 (655)
+........++|+..-|- .+|+|+|...|.|.+++.+. .-.+.....-..+|++| ++. . .+..+|+|
T Consensus 61 ~~~~~~~~~v~~~~~s~~------~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~-~~~-~-~~~~~l~s 131 (416)
T 2pm9_A 61 IASLQVDSKFNDLDWSHN------NKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTV-KFN-A-KQDNVLAS 131 (416)
T ss_dssp SCCCCCSSCEEEEEECSS------SSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEE-EEC-S-SSTTBEEE
T ss_pred EEEEecCCceEEEEECCC------CCeEEEEccCCeEEEeecccccccccchhhccCCccceEEE-EEc-C-CCCCEEEE
Confidence 333445678888888663 35999999999999997764 32344444557899984 432 2 13789999
Q ss_pred eecCceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee-CCeEEEE
Q 035748 231 GHENGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE-NGMVHGT 309 (655)
Q Consensus 231 GHadG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre-nGtl~G~ 309 (655)
|..||.|.+..+.. +..-. .....+..........+|+.+.+..-+ ..+++++..+|.|.+|.- .+.....
T Consensus 132 ~~~dg~v~iwd~~~---~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~ 203 (416)
T 2pm9_A 132 GGNNGEIFIWDMNK---CTESP----SNYTPLTPGQSMSSVDEVISLAWNQSL-AHVFASAGSSNFASIWDLKAKKEVIH 203 (416)
T ss_dssp ECSSSCEEBCBTTT---TSSCT----TTCCCBCCCCSCCSSCCCCEEEECSSC-TTEEEEESSSSCEEEEETTTTEEEEE
T ss_pred EcCCCeEEEEECCC---Ccccc----ccccccccccccCCCCCeeEEEeCCCC-CcEEEEEcCCCCEEEEECCCCCcceE
Confidence 99999987655432 11000 000111111112334577777765432 467888999999999996 4666555
Q ss_pred EeccC------CC---ceEEEee--eeeeeee-cC----ccccccccCcccccccCCCCcccceeeeccccccceeeeec
Q 035748 310 AAMLS------SK---PLVFLKQ--RLLFLTE-CG----AGSLDLRTMKLRETECEGLNNSLVRNYVFDATERSKAYGYT 373 (655)
Q Consensus 310 aa~~~------Sr---plaFlkQ--rllfLTe-~G----aaslDLrtm~vr~~pCeGLN~S~i~syaFD~~~rsKaYG~T 373 (655)
. ... .. -++|-.. .+++.+. .| +-..|+++.+........-....+.+.+|.+......+--+
T Consensus 204 ~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~ 282 (416)
T 2pm9_A 204 L-SYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSG 282 (416)
T ss_dssp E-CCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEE
T ss_pred E-eccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEe
Confidence 5 222 23 3444443 2343333 32 23347776431111111012345777888774334444444
Q ss_pred cCCcEEEEEEecCccccceEEeeeccccCCcccceeee-c--eeEEEEec-ceEEEEEeece
Q 035748 374 SEGDLIHVLLLGDVTNFKCRVRSKRKFDMSEPLAFQAI-K--GYLLVVCE-EKIFVYNVSAQ 431 (655)
Q Consensus 374 ~~G~Li~v~l~gD~~~~~CrVRs~~k~d~~~pvalqaI-K--GYlLvas~-~~V~VyNvTsq 431 (655)
.+|. |.+| |....+|...-..+- ....+++-- . .+|+.++. ..|.+||+...
T Consensus 283 ~dg~-v~~w---d~~~~~~~~~~~~~~--~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 283 RDNT-VLLW---NPESAEQLSQFPARG--NWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp SSSE-EEEE---CSSSCCEEEEEECSS--SCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred CCCC-EEEe---eCCCCccceeecCCC--CceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 4554 4444 333333332222211 122222222 2 35555554 56999999874
No 21
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=97.76 E-value=0.0024 Score=58.22 Aligned_cols=240 Identities=14% Similarity=0.137 Sum_probs=130.0
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-Cc--eEEEEecCCCCCeeEEEEeeeeeccee-EEEeeecCce
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GD--VSVEFYTMSELPVTAMVSYVSVYKNES-VLVTGHENGV 236 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GD--vl~E~~T~~~spVTAm~SYlsvrRNeT-~lVTGHadG~ 236 (655)
...|+|+..-|- .+|+++|...|.|.+++.+ +. ..+........+|+++ ++. .+.. .|++|..||.
T Consensus 11 ~~~v~~~~~s~~------~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~-~~~---~~~~~~l~~~~~dg~ 80 (342)
T 1yfq_A 11 KDYISDIKIIPS------KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC-NFI---DNTDLQIYVGTVQGE 80 (342)
T ss_dssp SSCEEEEEEEGG------GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEE-EEE---ESSSEEEEEEETTSC
T ss_pred CCcEEEEEEcCC------CCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEE-EEC---CCCCcEEEEEcCCCe
Confidence 467889988883 4699999999999999765 54 1122223557889984 432 4678 9999999999
Q ss_pred EEEEEE-EecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC----------Ce
Q 035748 237 ILIHKV-YEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN----------GM 305 (655)
Q Consensus 237 V~~hrV-~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren----------Gt 305 (655)
|.+..+ .. + . ...+. ......+|+.+.+.. ..+++++..+|.|.+|.-. +.
T Consensus 81 i~~wd~~~~---~-~--------~~~~~---~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 142 (342)
T 1yfq_A 81 ILKVDLIGS---P-S--------FQALT---NNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNL 142 (342)
T ss_dssp EEEECSSSS---S-S--------EEECB---SCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEES
T ss_pred EEEEEeccC---C-c--------eEecc---ccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCC
Confidence 987655 22 1 1 02221 101456799988877 5689999999999999853 22
Q ss_pred EEEEEe-ccCCCceEEEeeeeeeeeecCccc-ccccc-CcccccccCCCCcccceeeeccc-cccceeeeeccCCcEEEE
Q 035748 306 VHGTAA-MLSSKPLVFLKQRLLFLTECGAGS-LDLRT-MKLRETECEGLNNSLVRNYVFDA-TERSKAYGYTSEGDLIHV 381 (655)
Q Consensus 306 l~G~aa-~~~SrplaFlkQrllfLTe~Gaas-lDLrt-m~vr~~pCeGLN~S~i~syaFD~-~~rsKaYG~T~~G~Li~v 381 (655)
...+.. .....-++|-...++.-+..|.-. .|+++ +......-..-....+...+|.+ ...--+.| +.+| .|.+
T Consensus 143 ~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~-~~dg-~i~i 220 (342)
T 1yfq_A 143 NSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACS-SIDG-RVAV 220 (342)
T ss_dssp CSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEE-ETTS-EEEE
T ss_pred eeeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEE-ecCC-cEEE
Confidence 211220 011123344444533333333222 26666 33211111112234577778877 54433332 3344 3444
Q ss_pred EEecCc-----cccceEEeeeccc----cCC-cccce--eeeceeEEEEecc-eEEEEEeec
Q 035748 382 LLLGDV-----TNFKCRVRSKRKF----DMS-EPLAF--QAIKGYLLVVCEE-KIFVYNVSA 430 (655)
Q Consensus 382 ~l~gD~-----~~~~CrVRs~~k~----d~~-~pval--qaIKGYlLvas~~-~V~VyNvTs 430 (655)
|-.-.. ....+.++..... +.. +..++ ..=..||+.++.+ .|.+||+.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 282 (342)
T 1yfq_A 221 EFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT 282 (342)
T ss_dssp EECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred EEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCcc
Confidence 433211 1222222221110 011 21122 1123577777765 799999876
No 22
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=97.75 E-value=0.026 Score=52.53 Aligned_cols=121 Identities=18% Similarity=0.246 Sum_probs=82.5
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILI 239 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~ 239 (655)
...|+|+..-|. .+++|+|...|.|.+++.. |..+..+. ....||+++ ++. .+..+|+||..||.|.+
T Consensus 13 ~~~V~~~~fsp~------~~~l~s~~~dg~v~lWd~~~~~~~~~~~-~~~~~v~~~-~~~---~~~~~l~s~s~d~~i~v 81 (304)
T 2ynn_A 13 SDRVKGIDFHPT------EPWVLTTLYSGRVELWNYETQVEVRSIQ-VTETPVRAG-KFI---ARKNWIIVGSDDFRIRV 81 (304)
T ss_dssp CSCEEEEEECSS------SSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEE-EEE---GGGTEEEEEETTSEEEE
T ss_pred CCceEEEEECCC------CCEEEEEcCCCcEEEEECCCCceeEEee-ccCCcEEEE-EEe---CCCCEEEEECCCCEEEE
Confidence 456778777763 2689999999999999776 66554444 457889984 433 47789999999999965
Q ss_pred EEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee-CC-eEEEEE
Q 035748 240 HKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE-NG-MVHGTA 310 (655)
Q Consensus 240 hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre-nG-tl~G~a 310 (655)
..+ ..++ .++.|. +-..+|+.+.++.- .++++++..+|.|++|.- ++ .+....
T Consensus 82 wd~---~~~~--------~~~~~~-----~h~~~v~~~~~~~~--~~~l~sgs~D~~v~lWd~~~~~~~~~~~ 136 (304)
T 2ynn_A 82 FNY---NTGE--------KVVDFE-----AHPDYIRSIAVHPT--KPYVLSGSDDLTVKLWNWENNWALEQTF 136 (304)
T ss_dssp EET---TTCC--------EEEEEE-----CCSSCEEEEEECSS--SSEEEEEETTSCEEEEEGGGTTEEEEEE
T ss_pred EEC---CCCc--------EEEEEe-----CCCCcEEEEEEcCC--CCEEEEECCCCeEEEEECCCCcchhhhh
Confidence 433 2221 112231 12346888877654 458999999999999985 33 444444
No 23
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=97.74 E-value=0.004 Score=59.64 Aligned_cols=241 Identities=16% Similarity=0.134 Sum_probs=130.5
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-C-------ceEEEEecCCCCCeeEEEEeeeeecceeEEEeee
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-G-------DVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGH 232 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-G-------Dvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGH 232 (655)
...|+|+..-|+. .+++|+|...|.|.+++-. | ..+..+. +-..+|++| ++. . .++.+|+||.
T Consensus 81 ~~~V~~~~~~p~~-----~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~-~h~~~v~~~-~~~-p-~~~~~l~s~~ 151 (402)
T 2aq5_A 81 TAPVLDIAWCPHN-----DNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE-GHTKRVGIV-AWH-P-TAQNVLLSAG 151 (402)
T ss_dssp SSCEEEEEECTTC-----TTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEE-CCSSCEEEE-EEC-S-SBTTEEEEEE
T ss_pred CCCEEEEEeCCCC-----CCEEEEEeCCCeEEEEEccCCCCccccCCceEEec-CCCCeEEEE-EEC-c-CCCCEEEEEc
Confidence 5678888888853 2599999999999999755 5 3344443 446789984 432 2 2347999999
Q ss_pred cCceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee-CCeEEEEEe
Q 035748 233 ENGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE-NGMVHGTAA 311 (655)
Q Consensus 233 adG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre-nGtl~G~aa 311 (655)
.||.|.+..+.. ++ ....+ .......+|+.+.++. ..++++++..+|.|+||.- ++..-....
T Consensus 152 ~dg~i~iwd~~~---~~--------~~~~~---~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 215 (402)
T 2aq5_A 152 CDNVILVWDVGT---GA--------AVLTL---GPDVHPDTIYSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKD 215 (402)
T ss_dssp TTSCEEEEETTT---TE--------EEEEE---CTTTCCSCEEEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEEECCC---CC--------ccEEE---ecCCCCCceEEEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeec
Confidence 999987655421 11 11122 1122345788887775 4568999999999999996 466544431
Q ss_pred --ccC--CCceEEEee-eeeeee----ecC-ccccccccCcc--cccccCCCCcccceeeeccccccceeeeeccCCcEE
Q 035748 312 --MLS--SKPLVFLKQ-RLLFLT----ECG-AGSLDLRTMKL--RETECEGLNNSLVRNYVFDATERSKAYGYTSEGDLI 379 (655)
Q Consensus 312 --~~~--SrplaFlkQ-rllfLT----e~G-aaslDLrtm~v--r~~pCeGLN~S~i~syaFD~~~rsKaYG~T~~G~Li 379 (655)
... ...++|... +++..+ ..| +...|+++.+. .....+ .+..+...+|++..+.-+..-..+|. |
T Consensus 216 ~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~g~~dg~-i 292 (402)
T 2aq5_A 216 RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELD--TSSGVLLPFFDPDTNIVYLCGKGDSS-I 292 (402)
T ss_dssp CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECC--CCSSCEEEEEETTTTEEEEEETTCSC-E
T ss_pred cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEecc--CCCceeEEEEcCCCCEEEEEEcCCCe-E
Confidence 111 234566653 444443 222 22237766442 111111 23346667777665433333233443 3
Q ss_pred EEEEecCccccceEEeeeccccC-Ccccceee-eceeEEEEecceEEEEEeecee
Q 035748 380 HVLLLGDVTNFKCRVRSKRKFDM-SEPLAFQA-IKGYLLVVCEEKIFVYNVSAQH 432 (655)
Q Consensus 380 ~v~l~gD~~~~~CrVRs~~k~d~-~~pvalqa-IKGYlLvas~~~V~VyNvTsq~ 432 (655)
++|=.-+.......+.. ... ++...++- =+|-++++..+.+.+|++++..
T Consensus 293 ~i~d~~~~~~~~~~l~~---~~~~~~v~~~~~sp~~~~~~s~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 293 RYFEITSEAPFLHYLSM---FSSKESQRGMGYMPKRGLEVNKCEIARFYKLHERK 344 (402)
T ss_dssp EEEEECSSTTCEEEEEE---ECCSSCCSEEEECCGGGSCGGGTEEEEEEEEETTE
T ss_pred EEEEecCCCcceEeecc---cccCCcccceEEecccccceecceeEEEEEcCCCc
Confidence 33322221111111111 111 11111111 1344455556778999988743
No 24
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.73 E-value=0.017 Score=52.05 Aligned_cols=175 Identities=12% Similarity=0.089 Sum_probs=105.2
Q ss_pred cCCccceeeeccCCCCCCcceeEEeecccceEEEEccC-Cce-EEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceE
Q 035748 160 LESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDV-SVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVI 237 (655)
Q Consensus 160 lda~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDv-l~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V 237 (655)
-+..++++...|. .+++++|...|.|.+++.+ +.. ..........+|+++ ++ ..+...|++|..||.|
T Consensus 96 ~~~~v~~~~~~~~------~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~-~~---~~~~~~l~~~~~dg~v 165 (337)
T 1gxr_A 96 RDNYIRSCKLLPD------GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYAL-AI---SPDSKVCFSCCSDGNI 165 (337)
T ss_dssp TTSBEEEEEECTT------SSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEE-EE---CTTSSEEEEEETTSCE
T ss_pred CCCcEEEEEEcCC------CCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEE-EE---CCCCCEEEEEeCCCcE
Confidence 4667888888773 3699999999999999776 442 222234446778874 33 2477899999999998
Q ss_pred EEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee-CCeEEEEEeccCC-
Q 035748 238 LIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE-NGMVHGTAAMLSS- 315 (655)
Q Consensus 238 ~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre-nGtl~G~aa~~~S- 315 (655)
.+..+.. + +..+.+ .....+|+.+.+..- .++++++..+|.|.+|.- ++...... ....
T Consensus 166 ~~~d~~~---~--------~~~~~~-----~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~ 226 (337)
T 1gxr_A 166 AVWDLHN---Q--------TLVRQF-----QGHTDGASCIDISND--GTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQ 226 (337)
T ss_dssp EEEETTT---T--------EEEEEE-----CCCSSCEEEEEECTT--SSEEEEEETTSEEEEEETTTTEEEEEE-ECSSC
T ss_pred EEEeCCC---C--------ceeeee-----ecccCceEEEEECCC--CCEEEEEecCCcEEEEECCCCceEeee-cCCCc
Confidence 8765421 1 111222 123457888877663 468999999999999986 46655554 2221
Q ss_pred -CceEEEe--eeeeeeeecCc-cccccccCcccccccCCCCcccceeeecccccc
Q 035748 316 -KPLVFLK--QRLLFLTECGA-GSLDLRTMKLRETECEGLNNSLVRNYVFDATER 366 (655)
Q Consensus 316 -rplaFlk--QrllfLTe~Ga-aslDLrtm~vr~~pCeGLN~S~i~syaFD~~~r 366 (655)
.-++|-. +.++.-++.|. -..|+++.+...... ....+...+|.+..+
T Consensus 227 v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~ 278 (337)
T 1gxr_A 227 IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL---HESCVLSLKFAYCGK 278 (337)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECC---CSSCEEEEEECTTSS
T ss_pred eEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcC---CccceeEEEECCCCC
Confidence 1233322 23443333342 233666655433322 234566777776544
No 25
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=97.73 E-value=0.015 Score=53.53 Aligned_cols=189 Identities=14% Similarity=0.094 Sum_probs=113.9
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEe-cCCCCCeeEEEEeeeeecceeEEEeeecCceEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFY-TMSELPVTAMVSYVSVYKNESVLVTGHENGVIL 238 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~-T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~ 238 (655)
...++++..-|. .+|+++|...|.|.+++.. |....... .....+|+++ ++. .+...|++|..||.|.
T Consensus 52 ~~~v~~~~~~~~------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-~~~---~~~~~l~~~~~d~~v~ 121 (372)
T 1k8k_C 52 NGQVTGVDWAPD------SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCV-RWA---PNEKKFAVGSGSRVIS 121 (372)
T ss_dssp SSCEEEEEEETT------TTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEE-EEC---TTSSEEEEEETTSSEE
T ss_pred CCcccEEEEeCC------CCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEE-EEC---CCCCEEEEEeCCCEEE
Confidence 667889988883 3699999999999999765 66554443 4456788884 432 4778999999999998
Q ss_pred EEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee----------------
Q 035748 239 IHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE---------------- 302 (655)
Q Consensus 239 ~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre---------------- 302 (655)
+..+... ..|..+ ..+ ......+|+.+.++.- .++++++..+|.|++|.-
T Consensus 122 i~d~~~~---~~~~~~-----~~~----~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~ 187 (372)
T 1k8k_C 122 ICYFEQE---NDWWVC-----KHI----KKPIRSTVLSLDWHPN--SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGS 187 (372)
T ss_dssp EEEEETT---TTEEEE-----EEE----CTTCCSCEEEEEECTT--SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBS
T ss_pred EEEecCC---Ccceee-----eee----ecccCCCeeEEEEcCC--CCEEEEEcCCCCEEEEEccccccccccccccccc
Confidence 8776541 111100 111 1122457888887764 468999999999999983
Q ss_pred ---CCeEEEEEeccCCCc---eEEEee--eeeeeeecCcc-ccccccCcccccccCCCCcccceeeeccccccceeeeec
Q 035748 303 ---NGMVHGTAAMLSSKP---LVFLKQ--RLLFLTECGAG-SLDLRTMKLRETECEGLNNSLVRNYVFDATERSKAYGYT 373 (655)
Q Consensus 303 ---nGtl~G~aa~~~Srp---laFlkQ--rllfLTe~Gaa-slDLrtm~vr~~pCeGLN~S~i~syaFD~~~rsKaYG~T 373 (655)
.+...... .....+ ++|-+. .++.-+..|.- ..|+++.+....-. .....+...+|++..+--+.|
T Consensus 188 ~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~-- 262 (372)
T 1k8k_C 188 KMPFGELMFES-SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA--SETLPLLAVTFITESSLVAAG-- 262 (372)
T ss_dssp CCCTTCEEEEC-CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE--CSSCCEEEEEEEETTEEEEEE--
T ss_pred ccchhhheEec-CCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEc--cCCCCeEEEEEecCCCEEEEE--
Confidence 35555555 333333 333332 34333444422 23666554221111 123356777777765544444
Q ss_pred cCCcE
Q 035748 374 SEGDL 378 (655)
Q Consensus 374 ~~G~L 378 (655)
.+|.+
T Consensus 263 ~d~~i 267 (372)
T 1k8k_C 263 HDCFP 267 (372)
T ss_dssp TTSSC
T ss_pred eCCeE
Confidence 44443
No 26
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=97.71 E-value=0.034 Score=52.36 Aligned_cols=178 Identities=15% Similarity=0.187 Sum_probs=110.0
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEec-CCCCCeeEEEEeeeeecceeEEEeeecCceEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYT-MSELPVTAMVSYVSVYKNESVLVTGHENGVIL 238 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T-~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~ 238 (655)
...|+|+..-|.. .+++|+|...|.|.+++.+ +.....+.. +-..+|++| ++. . .+...|++|..||.|.
T Consensus 73 ~~~v~~~~~~~~~-----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~-~~~-~-~~~~~l~s~~~d~~i~ 144 (383)
T 3ei3_B 73 DRRVTSLEWHPTH-----PTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGM-KFN-Q-FNTNQLFVSSIRGATT 144 (383)
T ss_dssp SSCEEEEEECSSC-----TTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEE-EEE-T-TEEEEEEEEETTTEEE
T ss_pred CCCEEEEEECCCC-----CCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEE-EeC-C-CCCCEEEEEeCCCEEE
Confidence 5778888888743 2699999999999999776 776666653 567899984 432 2 2679999999999997
Q ss_pred EEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeCCeEEEEEeccCCCce
Q 035748 239 IHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKENGMVHGTAAMLSSKPL 318 (655)
Q Consensus 239 ~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFrenGtl~G~aa~~~Srpl 318 (655)
+..+. +. ..+.+. .......+|+.+.++.-| ++++++..+|.|.+|.-++...... .....++
T Consensus 145 iwd~~----~~--------~~~~~~--~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~-~~h~~~v 207 (383)
T 3ei3_B 145 LRDFS----GS--------VIQVFA--KTDSWDYWYCCVDVSVSR--QMLATGDSTGRLLLLGLDGHEIFKE-KLHKAKV 207 (383)
T ss_dssp EEETT----SC--------EEEEEE--CCCCSSCCEEEEEEETTT--TEEEEEETTSEEEEEETTSCEEEEE-ECSSSCE
T ss_pred EEECC----CC--------ceEEEe--ccCCCCCCeEEEEECCCC--CEEEEECCCCCEEEEECCCCEEEEe-ccCCCcE
Confidence 65542 11 112221 122234678888777544 5999999999999999877666665 3333433
Q ss_pred ---EEEee-e-eeeee-ecCc-cccccccCcccccccCCC-Ccccceeeeccc
Q 035748 319 ---VFLKQ-R-LLFLT-ECGA-GSLDLRTMKLRETECEGL-NNSLVRNYVFDA 363 (655)
Q Consensus 319 ---aFlkQ-r-llfLT-e~Ga-aslDLrtm~vr~~pCeGL-N~S~i~syaFD~ 363 (655)
+|-.. . +++-. ..|. -.-|+++.+.....-.-+ ....+.+.+|++
T Consensus 208 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~ 260 (383)
T 3ei3_B 208 THAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNP 260 (383)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECT
T ss_pred EEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcC
Confidence 33332 2 33322 2222 223777633211100001 234567777777
No 27
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=97.71 E-value=0.012 Score=56.01 Aligned_cols=135 Identities=17% Similarity=0.247 Sum_probs=83.7
Q ss_pred eecCCccceeeeccCCCCCCcceeEEeecccceEEEEccC-Cc-----------eEEEEecCC-----------CCCeeE
Q 035748 158 VKLESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GD-----------VSVEFYTMS-----------ELPVTA 214 (655)
Q Consensus 158 vklda~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GD-----------vl~E~~T~~-----------~spVTA 214 (655)
++-...|+|+..-|- .+|+|+|+..|.|.|++.+ +. ++.++..-. +.+|++
T Consensus 25 ~~~~~~V~~v~~s~~------g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~ 98 (447)
T 3dw8_B 25 VAEADIISTVEFNHS------GELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINK 98 (447)
T ss_dssp CCGGGSEEEEEECSS------SSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCE
T ss_pred ccccCcEEEEEECCC------CCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEE
Confidence 444678899888872 3699999999999999766 44 355555332 278998
Q ss_pred EEEeeeeecceeEEEeeecCceEEEEEEEecCC--------CCC--------cchhhhhhccc--c------ccccCCCC
Q 035748 215 MVSYVSVYKNESVLVTGHENGVILIHKVYEKPN--------GED--------WSSLVIENVGK--Y------VATENGEE 270 (655)
Q Consensus 215 m~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~--------gdD--------~~sLs~e~~r~--~------~~~e~~~d 270 (655)
+ ++. ...+...|+||..||.|.+..+..... +++ ..++.+...+. + ...-..+.
T Consensus 99 l-~~~-~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 176 (447)
T 3dw8_B 99 I-RWL-PQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH 176 (447)
T ss_dssp E-EEC-CCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCC
T ss_pred E-EEc-CCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCC
Confidence 4 443 433448999999999999998875111 000 00000000000 0 00002344
Q ss_pred CCceEEEEEeecCceeEEEEeeCCCcEEEEeeC
Q 035748 271 GLSVTLLEVHHIGRMRYILSADASGKIRVFKEN 303 (655)
Q Consensus 271 ~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren 303 (655)
..+|+.+.++. ..++++++ .+|.|.||.-+
T Consensus 177 ~~~v~~~~~~~--~~~~l~s~-~d~~i~iwd~~ 206 (447)
T 3dw8_B 177 TYHINSISINS--DYETYLSA-DDLRINLWHLE 206 (447)
T ss_dssp SSCCCEEEECT--TSSEEEEE-CSSEEEEEETT
T ss_pred CcceEEEEEcC--CCCEEEEe-CCCeEEEEECC
Confidence 56788877766 34588888 69999999876
No 28
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=97.70 E-value=0.0046 Score=57.36 Aligned_cols=191 Identities=13% Similarity=0.195 Sum_probs=109.5
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIH 240 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~h 240 (655)
...++|+..-|- .+|+|+|...|.|.+++.+|..+..+.. ...+|++| ++. .+...|++|..||.|.+.
T Consensus 108 ~~~v~~~~~s~~------~~~l~~~~~dg~i~i~~~~~~~~~~~~~-~~~~v~~~-~~~---~~~~~l~~~~~d~~i~iw 176 (425)
T 1r5m_A 108 TNQVTCLAWSHD------GNSIVTGVENGELRLWNKTGALLNVLNF-HRAPIVSV-KWN---KDGTHIISMDVENVTILW 176 (425)
T ss_dssp CBCEEEEEECTT------SSEEEEEETTSCEEEEETTSCEEEEECC-CCSCEEEE-EEC---TTSSEEEEEETTCCEEEE
T ss_pred CCceEEEEEcCC------CCEEEEEeCCCeEEEEeCCCCeeeeccC-CCccEEEE-EEC---CCCCEEEEEecCCeEEEE
Confidence 447889888872 3699999999999999988998777754 47889984 332 477889999999999877
Q ss_pred EEEe-------cCCCCC---------------cchhhhhhccccc-----------c-------ccCCCCCCceEEEEEe
Q 035748 241 KVYE-------KPNGED---------------WSSLVIENVGKYV-----------A-------TENGEEGLSVTLLEVH 280 (655)
Q Consensus 241 rV~E-------s~~gdD---------------~~sLs~e~~r~~~-----------~-------~e~~~d~~pVt~LE~h 280 (655)
.+.. ..+... ...+.......+. . ..-.....+|+.+.+.
T Consensus 177 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~ 256 (425)
T 1r5m_A 177 NVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN 256 (425)
T ss_dssp ETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEE
T ss_pred ECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEEC
Confidence 6531 111111 1111110001110 0 0011334578887776
Q ss_pred ecCceeEEEEeeCCCcEEEEee-CCeEEEEEeccCCC---ceEEEeee-eeeeeecCccc-cccccCcccccccCCCCcc
Q 035748 281 HIGRMRYILSADASGKIRVFKE-NGMVHGTAAMLSSK---PLVFLKQR-LLFLTECGAGS-LDLRTMKLRETECEGLNNS 354 (655)
Q Consensus 281 rvGr~RYVlsaDasGrV~VFre-nGtl~G~aa~~~Sr---plaFlkQr-llfLTe~Gaas-lDLrtm~vr~~pCeGLN~S 354 (655)
.-| ++++++..+|.|.+|.- ++...-.. ..... -++|-... ++.-+..|.-. .|+++.+....-. ....
T Consensus 257 ~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~ 331 (425)
T 1r5m_A 257 DTN--KLLLSASDDGTLRIWHGGNGNSQNCF-YGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSI--VDGV 331 (425)
T ss_dssp TTT--TEEEEEETTSCEEEECSSSBSCSEEE-CCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEE--CTTC
T ss_pred CCC--CEEEEEcCCCEEEEEECCCCccceEe-cCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecc--cCCc
Confidence 544 48999999999999986 34444444 22223 34444443 22222233222 2666544222111 1234
Q ss_pred cceeeeccccccc
Q 035748 355 LVRNYVFDATERS 367 (655)
Q Consensus 355 ~i~syaFD~~~rs 367 (655)
.+.+.+|.+..+-
T Consensus 332 ~i~~~~~s~~~~~ 344 (425)
T 1r5m_A 332 PIFAGRISQDGQK 344 (425)
T ss_dssp CEEEEEECTTSSE
T ss_pred cEEEEEEcCCCCE
Confidence 5666777765443
No 29
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.70 E-value=0.0068 Score=59.04 Aligned_cols=161 Identities=14% Similarity=0.169 Sum_probs=96.0
Q ss_pred CccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEE
Q 035748 162 SDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIH 240 (655)
Q Consensus 162 a~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~h 240 (655)
..|+|+.. + .+++++|...|.|.+++.+ |..+..+. +-..+|++| ++ +..+|+||..||.|.+.
T Consensus 134 ~~v~~~~~------d--~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l-~~-----~~~~l~sg~~dg~i~vw 198 (435)
T 1p22_A 134 KGVYCLQY------D--DQKIVSGLRDNTIKIWDKNTLECKRILT-GHTGSVLCL-QY-----DERVIITGSSDSTVRVW 198 (435)
T ss_dssp CCEEEEEC------C--SSEEEEEESSSCEEEEESSSCCEEEEEC-CCSSCEEEE-EC-----CSSEEEEEETTSCEEEE
T ss_pred CcEEEEEE------C--CCEEEEEeCCCeEEEEeCCCCeEEEEEc-CCCCcEEEE-EE-----CCCEEEEEcCCCeEEEE
Confidence 45677654 2 3799999999999999766 77665554 457789884 32 77899999999999887
Q ss_pred EEEe-------cCCCCCcchhhhhhc-----------ccccc---------ccCCCCCCceEEEEEeecCceeEEEEeeC
Q 035748 241 KVYE-------KPNGEDWSSLVIENV-----------GKYVA---------TENGEEGLSVTLLEVHHIGRMRYILSADA 293 (655)
Q Consensus 241 rV~E-------s~~gdD~~sLs~e~~-----------r~~~~---------~e~~~d~~pVt~LE~hrvGr~RYVlsaDa 293 (655)
.+.. ..|.+....++..+- +.+.. ....+...+|+.+.+ ...+++++..
T Consensus 199 d~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~s~~~ 274 (435)
T 1p22_A 199 DVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF----DDKYIVSASG 274 (435)
T ss_dssp ESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE----ETTEEEEEET
T ss_pred ECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe----CCCEEEEEeC
Confidence 7642 112222222222110 00100 001123346666655 4468999999
Q ss_pred CCcEEEEee-CCeEEEEEeccCCCceEEEe---eeeeeeeecCccc-cccccCc
Q 035748 294 SGKIRVFKE-NGMVHGTAAMLSSKPLVFLK---QRLLFLTECGAGS-LDLRTMK 342 (655)
Q Consensus 294 sGrV~VFre-nGtl~G~aa~~~SrplaFlk---QrllfLTe~Gaas-lDLrtm~ 342 (655)
+|.|.||.- ++..-.+. .....++..+. +.++.-+..|.-. .|+++.+
T Consensus 275 dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~ 327 (435)
T 1p22_A 275 DRTIKVWNTSTCEFVRTL-NGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA 327 (435)
T ss_dssp TSEEEEEETTTCCEEEEE-ECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCC
T ss_pred CCeEEEEECCcCcEEEEE-cCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCC
Confidence 999999986 46666666 44445554443 2333333333322 2666543
No 30
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=97.68 E-value=0.0087 Score=55.95 Aligned_cols=147 Identities=13% Similarity=0.032 Sum_probs=88.8
Q ss_pred CCccceeeeccCCCCCC-cceeEEeecccceEEEEccC-Cce-----EEEEecCC----CCCeeEEEEeeeeecceeE-E
Q 035748 161 ESDPTCINILPFRDYEG-HSKYVAVGDDKGRVFVFLRN-GDV-----SVEFYTMS----ELPVTAMVSYVSVYKNESV-L 228 (655)
Q Consensus 161 da~aTal~vLP~r~~~g-lskY~AVGD~~Grv~Vfs~~-GDv-----l~E~~T~~----~spVTAm~SYlsvrRNeT~-l 228 (655)
...|+|+...|....+| -.+++++|...|.|++++.+ +.. +..+.... ..+|++|.-.-....+... |
T Consensus 62 ~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l 141 (397)
T 1sq9_A 62 KSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRL 141 (397)
T ss_dssp TTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEE
T ss_pred CCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEE
Confidence 56788888877521111 12699999999999999766 554 55554333 5889985432000036667 9
Q ss_pred EeeecCceEEEEEEEecCCCCCcchhhhhhcccccc--ccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC-Ce
Q 035748 229 VTGHENGVILIHKVYEKPNGEDWSSLVIENVGKYVA--TENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN-GM 305 (655)
Q Consensus 229 VTGHadG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~--~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren-Gt 305 (655)
++|..||.|.+..+......++-..+.......+.. ........+|+.+.++.-| +++++..+|.|.+|.-. +.
T Consensus 142 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~ 218 (397)
T 1sq9_A 142 VATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG---LIATGFNNGTVQISELSTLR 218 (397)
T ss_dssp EEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS---EEEEECTTSEEEEEETTTTE
T ss_pred EEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc---eEEEEeCCCcEEEEECCCCc
Confidence 999999999998887511100000011000002210 0012345678888887766 89999999999999964 66
Q ss_pred EEEEE
Q 035748 306 VHGTA 310 (655)
Q Consensus 306 l~G~a 310 (655)
.-...
T Consensus 219 ~~~~~ 223 (397)
T 1sq9_A 219 PLYNF 223 (397)
T ss_dssp EEEEE
T ss_pred eeEEE
Confidence 66665
No 31
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.67 E-value=0.024 Score=52.06 Aligned_cols=137 Identities=12% Similarity=0.178 Sum_probs=84.2
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILI 239 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~ 239 (655)
...|+|+.+-|. .+|+|+|...|.|.+++.. |.....+. ....+|+++ ++. .+..+|+||..||.|.+
T Consensus 23 ~~~v~~~~~s~~------~~~l~s~~~dg~i~iw~~~~~~~~~~~~-~h~~~v~~~-~~~---~~~~~l~s~~~d~~i~v 91 (312)
T 4ery_A 23 TKAVSSVKFSPN------GEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDV-AWS---SDSNLLVSASDDKTLKI 91 (312)
T ss_dssp SSCEEEEEECTT------SSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEE-EEC---TTSSEEEEEETTSEEEE
T ss_pred CCcEEEEEECCC------CCEEEEeeCCCeEEEEeCCCcccchhhc-cCCCceEEE-EEc---CCCCEEEEECCCCEEEE
Confidence 467888888773 3699999999999999765 77665554 446788883 432 47789999999999977
Q ss_pred EEEEe-------cCCCCCcchhhhhhccc-cc-----------ccc-------CCCCCCceEEEEEeecCceeEEEEeeC
Q 035748 240 HKVYE-------KPNGEDWSSLVIENVGK-YV-----------ATE-------NGEEGLSVTLLEVHHIGRMRYILSADA 293 (655)
Q Consensus 240 hrV~E-------s~~gdD~~sLs~e~~r~-~~-----------~~e-------~~~d~~pVt~LE~hrvGr~RYVlsaDa 293 (655)
..+.. ..|.+....+.....+. +. ... -.....+|+.+.+.. ..++++++..
T Consensus 92 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~ 169 (312)
T 4ery_A 92 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR--DGSLIVSSSY 169 (312)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT--TSSEEEEEET
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcC--CCCEEEEEeC
Confidence 65421 11222111111110000 00 000 112234666665554 3458999999
Q ss_pred CCcEEEEeeC-CeEEEEE
Q 035748 294 SGKIRVFKEN-GMVHGTA 310 (655)
Q Consensus 294 sGrV~VFren-Gtl~G~a 310 (655)
+|.|+||.-. +...-..
T Consensus 170 d~~i~~wd~~~~~~~~~~ 187 (312)
T 4ery_A 170 DGLCRIWDTASGQCLKTL 187 (312)
T ss_dssp TSCEEEEETTTCCEEEEE
T ss_pred CCcEEEEECCCCceeeEE
Confidence 9999999873 5544443
No 32
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.66 E-value=0.016 Score=59.99 Aligned_cols=233 Identities=14% Similarity=0.111 Sum_probs=129.7
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEcc-CCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLR-NGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILI 239 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~-~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~ 239 (655)
...|+|+..-|. .+++|+|...|.|.+++. .|..+..+. ....+|+++ ++. .+...|++|..||.|.+
T Consensus 13 ~~~v~~i~~sp~------~~~la~~~~~g~v~iwd~~~~~~~~~~~-~~~~~v~~~-~~s---~~~~~l~~~~~dg~i~v 81 (814)
T 3mkq_A 13 SDRVKGIDFHPT------EPWVLTTLYSGRVEIWNYETQVEVRSIQ-VTETPVRAG-KFI---ARKNWIIVGSDDFRIRV 81 (814)
T ss_dssp CSCEEEEEECSS------SSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEE-EEE---GGGTEEEEEETTSEEEE
T ss_pred CCceEEEEECCC------CCEEEEEeCCCEEEEEECCCCceEEEEe-cCCCcEEEE-EEe---CCCCEEEEEeCCCeEEE
Confidence 567888888773 269999999999999984 587776666 457899984 432 47789999999999866
Q ss_pred EEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC-C-eEEEEEeccCCC-
Q 035748 240 HKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN-G-MVHGTAAMLSSK- 316 (655)
Q Consensus 240 hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren-G-tl~G~aa~~~Sr- 316 (655)
..+ ..+. ....+ .....+|+.+.++.-| ++++++..+|.|+||.-+ + ...... .....
T Consensus 82 w~~---~~~~--------~~~~~-----~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~vw~~~~~~~~~~~~-~~~~~~ 142 (814)
T 3mkq_A 82 FNY---NTGE--------KVVDF-----EAHPDYIRSIAVHPTK--PYVLSGSDDLTVKLWNWENNWALEQTF-EGHEHF 142 (814)
T ss_dssp EET---TTCC--------EEEEE-----ECCSSCEEEEEECSSS--SEEEEEETTSEEEEEEGGGTSEEEEEE-ECCSSC
T ss_pred EEC---CCCc--------EEEEE-----ecCCCCEEEEEEeCCC--CEEEEEcCCCEEEEEECCCCceEEEEE-cCCCCc
Confidence 543 2221 11122 1233568888777654 479999999999999964 3 555555 33333
Q ss_pred --ceEEEe-e--eeeeeeecCccc-cccccCcccccccCCCCcccceeeeccccccceeeeeccCCcEEEEEEecCcccc
Q 035748 317 --PLVFLK-Q--RLLFLTECGAGS-LDLRTMKLRETECEGLNNSLVRNYVFDATERSKAYGYTSEGDLIHVLLLGDVTNF 390 (655)
Q Consensus 317 --plaFlk-Q--rllfLTe~Gaas-lDLrtm~vr~~pCeGLN~S~i~syaFD~~~rsKaYG~T~~G~Li~v~l~gD~~~~ 390 (655)
.++|-. . .++.-+..|.-. .|+++.+....-- +-....+...+|.+...++..........|.+| |...-
T Consensus 143 v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~---d~~~~ 218 (814)
T 3mkq_A 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-TGQERGVNYVDYYPLPDKPYMITASDDLTIKIW---DYQTK 218 (814)
T ss_dssp EEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEE-CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEE---ETTTT
T ss_pred EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEe-cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEE---ECCCC
Confidence 345544 2 233333334222 2555433211111 111244555666553223222222222234444 22222
Q ss_pred ceEEeeeccccCCcc---cceeeeceeEEEEec-ceEEEEEeec
Q 035748 391 KCRVRSKRKFDMSEP---LAFQAIKGYLLVVCE-EKIFVYNVSA 430 (655)
Q Consensus 391 ~CrVRs~~k~d~~~p---valqaIKGYlLvas~-~~V~VyNvTs 430 (655)
+|...-.. ...+ +++..-..++++++. ..|.+||+.+
T Consensus 219 ~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 219 SCVATLEG---HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (814)
T ss_dssp EEEEEEEC---CSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred cEEEEEcC---CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 33221111 1122 222222346777775 5699999876
No 33
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=97.65 E-value=0.0087 Score=55.78 Aligned_cols=134 Identities=13% Similarity=0.120 Sum_probs=92.2
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILI 239 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~ 239 (655)
...|+++.+-|.. +|++.|...|.|.+++.. +..+.....+-..+|++ +++. . .+..+|+||..||.|.+
T Consensus 97 ~~~v~~~~~~~~~------~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~-v~~~-p-~~~~~l~sgs~D~~v~i 167 (304)
T 2ynn_A 97 PDYIRSIAVHPTK------PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMC-VAFN-P-KDPSTFASGCLDRTVKV 167 (304)
T ss_dssp SSCEEEEEECSSS------SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEE-EEEC-T-TCTTEEEEEETTSEEEE
T ss_pred CCcEEEEEEcCCC------CEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEE-EEEC-C-CCCCEEEEEeCCCeEEE
Confidence 4567888877743 589999999999999755 65666666666788998 4442 3 36789999999999877
Q ss_pred EEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee-CCeEEEEEeccCCCce
Q 035748 240 HKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE-NGMVHGTAAMLSSKPL 318 (655)
Q Consensus 240 hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre-nGtl~G~aa~~~Srpl 318 (655)
..+.. +..- ..+ .......|..+.++..+..+|++++..+|.|+||.- ++....+. ..-..++
T Consensus 168 wd~~~---~~~~--------~~~----~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~-~~h~~~v 231 (304)
T 2ynn_A 168 WSLGQ---STPN--------FTL----TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-EGHMSNV 231 (304)
T ss_dssp EETTC---SSCS--------EEE----ECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCE
T ss_pred EECCC---CCcc--------cee----ccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee-CCCCCCE
Confidence 65422 1100 011 112234677777777788889999999999999986 46666666 4443444
Q ss_pred E
Q 035748 319 V 319 (655)
Q Consensus 319 a 319 (655)
.
T Consensus 232 ~ 232 (304)
T 2ynn_A 232 S 232 (304)
T ss_dssp E
T ss_pred E
Confidence 3
No 34
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=97.63 E-value=0.029 Score=52.97 Aligned_cols=179 Identities=11% Similarity=0.096 Sum_probs=105.3
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILI 239 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~ 239 (655)
...|+|+.+-|. .+|++.|...|.|.+++.. |..+..+. +-..+|++ +++. .+...|+||..||.|.+
T Consensus 76 ~~~V~~~~~~~~------~~~l~s~s~D~~v~lwd~~~~~~~~~~~-~h~~~v~~-v~~s---p~~~~l~s~~~d~~i~~ 144 (343)
T 2xzm_R 76 NHFVSDLALSQE------NCFAISSSWDKTLRLWDLRTGTTYKRFV-GHQSEVYS-VAFS---PDNRQILSAGAEREIKL 144 (343)
T ss_dssp SSCEEEEEECSS------TTEEEEEETTSEEEEEETTSSCEEEEEE-CCCSCEEE-EEEC---SSTTEEEEEETTSCEEE
T ss_pred CCceEEEEECCC------CCEEEEEcCCCcEEEEECCCCcEEEEEc-CCCCcEEE-EEEC---CCCCEEEEEcCCCEEEE
Confidence 345777777653 3689999999999999654 88766554 34678988 4432 46778999999999987
Q ss_pred EEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCce--------eEEEEeeCCCcEEEEeeCCeEEEEEe
Q 035748 240 HKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRM--------RYILSADASGKIRVFKENGMVHGTAA 311 (655)
Q Consensus 240 hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~--------RYVlsaDasGrV~VFrenGtl~G~aa 311 (655)
..+.. +. .+...+.......|+.+.....+.. .|++++..+|.|+||..++......
T Consensus 145 wd~~~----~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~- 209 (343)
T 2xzm_R 145 WNILG----EC----------KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTF- 209 (343)
T ss_dssp EESSS----CE----------EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEE-
T ss_pred EeccC----Cc----------eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEE-
Confidence 76531 10 0100111223345666665554432 6899999999999999877766555
Q ss_pred ccCCCce---EEEee--eeeeeeecCcccc-ccccCcccccccCCCCcccceeeeccccccc
Q 035748 312 MLSSKPL---VFLKQ--RLLFLTECGAGSL-DLRTMKLRETECEGLNNSLVRNYVFDATERS 367 (655)
Q Consensus 312 ~~~Srpl---aFlkQ--rllfLTe~Gaasl-DLrtm~vr~~pCeGLN~S~i~syaFD~~~rs 367 (655)
..-..++ +|-.. .|+.-+.-|...+ |+++.......- -.+..+.+.+|.+...-
T Consensus 210 ~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~--~~~~~v~~v~~sp~~~~ 269 (343)
T 2xzm_R 210 KAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF--DAGSTINQIAFNPKLQW 269 (343)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE--ECSSCEEEEEECSSSCE
T ss_pred cCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee--cCCCcEEEEEECCCCCE
Confidence 3333333 33332 2322222232222 654332111100 02345777888776543
No 35
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=97.62 E-value=0.047 Score=51.65 Aligned_cols=196 Identities=13% Similarity=0.093 Sum_probs=105.7
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILI 239 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~ 239 (655)
...|+|+..-|- .+++|.|...|.|.+++.. |..+..+.. ...+|++ +++. .+..+|++|..||.|.+
T Consensus 55 ~~~v~~~~~s~d------~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~-~~~~v~~-~~~s---~~~~~l~s~~~d~~v~i 123 (340)
T 1got_B 55 LAKIYAMHWGTD------SRLLLSASQDGKLIIWDSYTTNKVHAIPL-RSSWVMT-CAYA---PSGNYVACGGLDNICSI 123 (340)
T ss_dssp SSCEEEEEECTT------SSEEEEEETTTEEEEEETTTCCEEEEEEC-SSSCEEE-EEEC---TTSSEEEEEETTCEEEE
T ss_pred CCceEEEEECCC------CCEEEEEeCCCcEEEEECCCCCcceEeec-CCccEEE-EEEC---CCCCEEEEEeCCCeEEE
Confidence 346677776552 3699999999999999755 776665554 4677887 3442 47789999999999877
Q ss_pred EEEEe-----------cCCCCCcchhhhhhccccc-cc----------c-------CCCCCCceEEEEEeecCceeEEEE
Q 035748 240 HKVYE-----------KPNGEDWSSLVIENVGKYV-AT----------E-------NGEEGLSVTLLEVHHIGRMRYILS 290 (655)
Q Consensus 240 hrV~E-----------s~~gdD~~sLs~e~~r~~~-~~----------e-------~~~d~~pVt~LE~hrvGr~RYVls 290 (655)
..+.. ..|......+.......+. .+ + -.+...+|+.+.++. ..+++++
T Consensus 124 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s 201 (340)
T 1got_B 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP--DTRLFVS 201 (340)
T ss_dssp EETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEEE
T ss_pred EECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECC--CCCEEEE
Confidence 65421 1111111111100001110 00 0 012234566665554 3468999
Q ss_pred eeCCCcEEEEee-CCeEEEEEeccCCCc---eEEEeeeeeeeee--cCccc-cccccCcccc-cccCCCCcccceeeecc
Q 035748 291 ADASGKIRVFKE-NGMVHGTAAMLSSKP---LVFLKQRLLFLTE--CGAGS-LDLRTMKLRE-TECEGLNNSLVRNYVFD 362 (655)
Q Consensus 291 aDasGrV~VFre-nGtl~G~aa~~~Srp---laFlkQrllfLTe--~Gaas-lDLrtm~vr~-~pCeGLN~S~i~syaFD 362 (655)
+..+|.|++|.- ++....++ ..-..+ ++|-...-.++|. -|.-. -|+++.+... ...++ ....+.+.+|.
T Consensus 202 g~~d~~v~~wd~~~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~-~~~~v~~~~~s 279 (340)
T 1got_B 202 GACDASAKLWDVREGMCRQTF-TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN-IICGITSVSFS 279 (340)
T ss_dssp EETTSCEEEEETTTCSEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT-CCSCEEEEEEC
T ss_pred EeCCCcEEEEECCCCeeEEEE-cCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCC-cccceEEEEEC
Confidence 999999999985 46655555 333333 3444332222332 22222 2666543221 11111 11246667777
Q ss_pred ccccceeee
Q 035748 363 ATERSKAYG 371 (655)
Q Consensus 363 ~~~rsKaYG 371 (655)
+..+.-+.|
T Consensus 280 ~~g~~l~~g 288 (340)
T 1got_B 280 KSGRLLLAG 288 (340)
T ss_dssp TTSSEEEEE
T ss_pred CCCCEEEEE
Confidence 765544443
No 36
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=97.62 E-value=0.04 Score=51.84 Aligned_cols=279 Identities=15% Similarity=0.200 Sum_probs=144.4
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccCCc-----eEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCc
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRNGD-----VSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENG 235 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~GD-----vl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG 235 (655)
...|+++..-|.. .++++.|...|.|.+....++ ..+....+-..+|+++ ++ ..+..+|+||..||
T Consensus 17 ~~~V~~l~~~~~~-----~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~-~~---s~dg~~l~s~s~D~ 87 (319)
T 3frx_A 17 NGWVTSLATSAGQ-----PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC-TL---TADGAYALSASWDK 87 (319)
T ss_dssp SSCEEEEEECSSC-----TTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEE-EE---CTTSSEEEEEETTS
T ss_pred cceEEEEEccCCC-----ccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEE-EE---CCCCCEEEEEeCCC
Confidence 4567888776632 468999999999999965521 1122234456788883 33 25788999999999
Q ss_pred eEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeCCeEEEEEeccCC
Q 035748 236 VILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKENGMVHGTAAMLSS 315 (655)
Q Consensus 236 ~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFrenGtl~G~aa~~~S 315 (655)
.|.+..+. .++ ..+.|. +-..+|+.+.+.. ...+++++..+|.|+||.-++....+. ....
T Consensus 88 ~v~~wd~~---~~~--------~~~~~~-----~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vwd~~~~~~~~~-~~h~ 148 (319)
T 3frx_A 88 TLRLWDVA---TGE--------TYQRFV-----GHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIKGQCLATL-LGHN 148 (319)
T ss_dssp EEEEEETT---TTE--------EEEEEE-----CCSSCEEEEEECT--TSCEEEEEETTSCEEEEETTSCEEEEE-CCCS
T ss_pred EEEEEECC---CCC--------eeEEEc-----cCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCeEEEE-eccC
Confidence 99665432 221 122231 2234688877654 446899999999999999877655554 3333
Q ss_pred Cc---eEEEe------eeeeeeeecCcccc---ccccCcccccccCCCCcccceeeeccccccceeeeeccCCcEEEEEE
Q 035748 316 KP---LVFLK------QRLLFLTECGAGSL---DLRTMKLRETECEGLNNSLVRNYVFDATERSKAYGYTSEGDLIHVLL 383 (655)
Q Consensus 316 rp---laFlk------QrllfLTe~Gaasl---DLrtm~vr~~pCeGLN~S~i~syaFD~~~rsKaYG~T~~G~Li~v~l 383 (655)
.. +.|.. ....++|...-+.+ |+++.+....- .| ....+.+.+|.+..+--+.| ..+| .|.+|
T Consensus 149 ~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~-h~~~v~~~~~sp~g~~l~s~-~~dg-~i~iw- 223 (319)
T 3frx_A 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF-IG-HNSNINTLTASPDGTLIASA-GKDG-EIMLW- 223 (319)
T ss_dssp SCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEE-CC-CCSCEEEEEECTTSSEEEEE-ETTC-EEEEE-
T ss_pred CcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheee-cC-CCCcEEEEEEcCCCCEEEEE-eCCC-eEEEE-
Confidence 32 33332 11233333222222 55554322111 11 12345566666644332222 1222 33333
Q ss_pred ecCccccceEEeeeccccCCc--ccceeeeceeEEEEecceEEEEEeeceeeeccCCCccccccChHHHHHhhccccccc
Q 035748 384 LGDVTNFKCRVRSKRKFDMSE--PLAFQAIKGYLLVVCEEKIFVYNVSAQHYVRSGGPRLLFSAGLDEIRSSFLNYQVMD 461 (655)
Q Consensus 384 ~gD~~~~~CrVRs~~k~d~~~--pvalqaIKGYlLvas~~~V~VyNvTsq~y~Rv~~PR~Lfsa~L~~i~s~Fl~~~~~~ 461 (655)
|...-+|...-... ++ -+++..=.-+|.+++.+.|.||+...+...+.- ++ .|.....
T Consensus 224 --d~~~~~~~~~~~~~---~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~--~~-----------~~~~~~~-- 283 (319)
T 3frx_A 224 --NLAAKKAMYTLSAQ---DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDL--RP-----------EFAGYSK-- 283 (319)
T ss_dssp --ETTTTEEEEEEECC---SCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEE--CC-----------CCTTCCG--
T ss_pred --ECCCCcEEEEecCC---CcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeecc--Cc-----------ccccccc--
Confidence 22222332211111 11 122222223455666788999998876432211 00 0110000
Q ss_pred cccccccccCCceEEecCCceEEEeeCCcEEEEEe
Q 035748 462 VDVNDEKRRSVPLIASDRDKLLVLGLGGGYVGMYR 496 (655)
Q Consensus 462 ~~~~~~~~a~~PLIASdRekLVVlglgdGyVa~Yr 496 (655)
.......-|--|.-+++++.|=.||.|-+|+
T Consensus 284 ----~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 284 ----AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp ----GGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ----CcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence 0000111122344556788888999998886
No 37
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=97.62 E-value=0.04 Score=50.66 Aligned_cols=116 Identities=10% Similarity=0.083 Sum_probs=83.1
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccCCc---eEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRNGD---VSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVI 237 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~GD---vl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V 237 (655)
..+|+|+.+-|. .+|+|+|...|.|++++.++. .+..+. ....+|++| ++. .+..+|++|..||.|
T Consensus 8 ~~~i~~~~~s~~------~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~h~~~v~~~-~~~---~~~~~l~~~~~dg~i 76 (372)
T 1k8k_C 8 VEPISCHAWNKD------RTQIAICPNNHEVHIYEKSGNKWVQVHELK-EHNGQVTGV-DWA---PDSNRIVTCGTDRNA 76 (372)
T ss_dssp SSCCCEEEECTT------SSEEEEECSSSEEEEEEEETTEEEEEEEEE-CCSSCEEEE-EEE---TTTTEEEEEETTSCE
T ss_pred CCCeEEEEECCC------CCEEEEEeCCCEEEEEeCCCCcEEeeeeec-CCCCcccEE-EEe---CCCCEEEEEcCCCeE
Confidence 568899988873 369999999999999988755 444444 457789984 332 478899999999999
Q ss_pred EEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC
Q 035748 238 LIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN 303 (655)
Q Consensus 238 ~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren 303 (655)
.+..+... + + ...+ .......+|+.+.+..- .++++++..+|.|.+|.-+
T Consensus 77 ~vwd~~~~---~-~-------~~~~---~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~i~d~~ 126 (372)
T 1k8k_C 77 YVWTLKGR---T-W-------KPTL---VILRINRAARCVRWAPN--EKKFAVGSGSRVISICYFE 126 (372)
T ss_dssp EEEEEETT---E-E-------EEEE---ECCCCSSCEEEEEECTT--SSEEEEEETTSSEEEEEEE
T ss_pred EEEECCCC---e-e-------eeeE---EeecCCCceeEEEECCC--CCEEEEEeCCCEEEEEEec
Confidence 88877431 1 0 0111 11223457888877754 4689999999999998774
No 38
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.62 E-value=0.015 Score=56.55 Aligned_cols=232 Identities=9% Similarity=0.085 Sum_probs=118.0
Q ss_pred ceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEe-------cCCCCC
Q 035748 179 SKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYE-------KPNGED 250 (655)
Q Consensus 179 skY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~E-------s~~gdD 250 (655)
.+|+++|+..|.|.+++.. |..+..+. +-..+|+++.. +..+|+||..||.|.+..+.. ..|...
T Consensus 129 g~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~------~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~ 201 (445)
T 2ovr_B 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLV-GHTGGVWSSQM------RDNIIISGSTDRTLKVWNAETGECIHTLYGHTST 201 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTCCEEEECC-CCSSCEEEEEE------ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEc-CCCCCEEEEEe------cCCEEEEEeCCCeEEEEECCcCcEEEEECCCCCc
Confidence 3689999999999999765 88776665 44678888432 356899999999998776532 112222
Q ss_pred cchhhhhhcccccccc-----------------CCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee-CCeEEEEEec
Q 035748 251 WSSLVIENVGKYVATE-----------------NGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE-NGMVHGTAAM 312 (655)
Q Consensus 251 ~~sLs~e~~r~~~~~e-----------------~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre-nGtl~G~aa~ 312 (655)
-..+...+-.....+. -.....+|+.+.. ...+++++..+|.|.+|.. ++...... .
T Consensus 202 v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~ 276 (445)
T 2ovr_B 202 VRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTL-Q 276 (445)
T ss_dssp EEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEE-C
T ss_pred EEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE----CCCEEEEEcCCCEEEEEECCCCcEeEEe-c
Confidence 2222221100010000 0123345555554 3468888889999999986 46665555 3
Q ss_pred cCCCceEEEe---eeeeeeeecCccc-cccccCcccccccCCCCcccceeeeccccccceeeeeccCCcEEEEEEecCcc
Q 035748 313 LSSKPLVFLK---QRLLFLTECGAGS-LDLRTMKLRETECEGLNNSLVRNYVFDATERSKAYGYTSEGDLIHVLLLGDVT 388 (655)
Q Consensus 313 ~~SrplaFlk---QrllfLTe~Gaas-lDLrtm~vr~~pCeGLN~S~i~syaFD~~~rsKaYG~T~~G~Li~v~l~gD~~ 388 (655)
....++.-+. +.++.-+..|.-. .|+++.+....- .+ ....+....||.. ...--+.+|. |.+| |..
T Consensus 277 ~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~-~~~~v~~~~~~~~---~l~~~~~dg~-i~vw---d~~ 347 (445)
T 2ovr_B 277 GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTL-TG-HQSLTSGMELKDN---ILVSGNADST-VKIW---DIK 347 (445)
T ss_dssp CCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEE-CC-CCSCEEEEEEETT---EEEEEETTSC-EEEE---ETT
T ss_pred CCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEE-cC-CcccEEEEEEeCC---EEEEEeCCCe-EEEE---ECC
Confidence 3333333332 3333333333322 266654432211 11 1123334444321 2222223332 3333 222
Q ss_pred ccceEEeeeccccCCc-ccceeeeceeEEEEec-ceEEEEEeece
Q 035748 389 NFKCRVRSKRKFDMSE-PLAFQAIKGYLLVVCE-EKIFVYNVSAQ 431 (655)
Q Consensus 389 ~~~CrVRs~~k~d~~~-pvalqaIKGYlLvas~-~~V~VyNvTsq 431 (655)
.-+|...-........ ..+++-=..|++.++. ..|.+||+.+.
T Consensus 348 ~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~ 392 (445)
T 2ovr_B 348 TGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTG 392 (445)
T ss_dssp TCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTC
T ss_pred CCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCC
Confidence 2233222221111222 3334333457777775 46999998773
No 39
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.61 E-value=0.02 Score=55.68 Aligned_cols=156 Identities=15% Similarity=0.080 Sum_probs=79.4
Q ss_pred eeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEecCCCCCcchhhhhh
Q 035748 180 KYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWSSLVIEN 258 (655)
Q Consensus 180 kY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~ 258 (655)
+++++|...|.|.+++.. |..+..+.. ...+|+++ ++ +...|++|..||.|.+..+.. + +.
T Consensus 210 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~-~~-----~~~~l~~~~~dg~i~iwd~~~---~--------~~ 271 (445)
T 2ovr_B 210 KRVVSGSRDATLRVWDIETGQCLHVLMG-HVAAVRCV-QY-----DGRRVVSGAYDFMVKVWDPET---E--------TC 271 (445)
T ss_dssp TEEEEEETTSEEEEEESSSCCEEEEEEC-CSSCEEEE-EE-----CSSCEEEEETTSCEEEEEGGG---T--------EE
T ss_pred CEEEEEeCCCEEEEEECCCCcEEEEEcC-CcccEEEE-EE-----CCCEEEEEcCCCEEEEEECCC---C--------cE
Confidence 345555555666666433 444443332 24455542 21 444555566666554332211 0 11
Q ss_pred ccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee-CCeEEEEEeccCCCceEEEe---eeeeeeeecCcc
Q 035748 259 VGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE-NGMVHGTAAMLSSKPLVFLK---QRLLFLTECGAG 334 (655)
Q Consensus 259 ~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre-nGtl~G~aa~~~SrplaFlk---QrllfLTe~Gaa 334 (655)
++.+ .....+|+.+.+ ...+++++..+|.|++|.- ++....+. .....++..+. +.++.-+..|.-
T Consensus 272 ~~~~-----~~~~~~v~~~~~----~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~l~~~~~dg~i 341 (445)
T 2ovr_B 272 LHTL-----QGHTNRVYSLQF----DGIHVVSGSLDTSIRVWDVETGNCIHTL-TGHQSLTSGMELKDNILVSGNADSTV 341 (445)
T ss_dssp EEEE-----CCCSSCEEEEEE----CSSEEEEEETTSCEEEEETTTCCEEEEE-CCCCSCEEEEEEETTEEEEEETTSCE
T ss_pred eEEe-----cCCCCceEEEEE----CCCEEEEEeCCCeEEEEECCCCCEEEEE-cCCcccEEEEEEeCCEEEEEeCCCeE
Confidence 1112 123456777766 5678999999999999996 57666666 33333333332 333333334432
Q ss_pred -ccccccCccc-ccccCCCCcccceeeeccc
Q 035748 335 -SLDLRTMKLR-ETECEGLNNSLVRNYVFDA 363 (655)
Q Consensus 335 -slDLrtm~vr-~~pCeGLN~S~i~syaFD~ 363 (655)
..|+++.+.. ......-....+.+.+||.
T Consensus 342 ~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 372 (445)
T 2ovr_B 342 KIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK 372 (445)
T ss_dssp EEEETTTCCEEEEECSTTSCSSCEEEEEECS
T ss_pred EEEECCCCcEEEEEccCCCCCCCEEEEEECC
Confidence 2377664432 2222222345567777763
No 40
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=97.55 E-value=0.01 Score=63.71 Aligned_cols=120 Identities=18% Similarity=0.160 Sum_probs=83.2
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC---CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN---GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVI 237 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~---GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V 237 (655)
...|+|+..-|. .+|+|+|...|.|.|++.. +..+..+ .+-..+|++| ++. ...+..+|+||..||.|
T Consensus 9 ~~~V~~l~~s~d------g~~latg~~dg~I~vwd~~~~~~~~~~~l-~~h~~~V~~l-~~s-~~~~~~~l~s~s~Dg~I 79 (753)
T 3jro_A 9 NELIHDAVLDYY------GKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRV-DWA-HPKFGTILASCSYDGKV 79 (753)
T ss_dssp CCCEEEECCCSS------SCCEEEEETTTEEEEEEEETTEEEEEEEE-CCCSSCEEEE-EEC-CTTSCSEEEEEETTSCE
T ss_pred cceeEEEEECCC------CCeEEEEECCCcEEEEecCCCCCccceec-cCCcCceEEE-Eec-CCCCCCEEEEEeCCCeE
Confidence 456777777663 3589999999999999765 3333333 4457899994 442 33458899999999999
Q ss_pred EEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC
Q 035748 238 LIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN 303 (655)
Q Consensus 238 ~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren 303 (655)
.+..+... .+. ....+ .....+|+.+.++.-+...+++++..+|.|.||.-.
T Consensus 80 ~vwd~~~~----~~~-----~~~~~-----~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~ 131 (753)
T 3jro_A 80 LIWKEENG----RWS-----QIAVH-----AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 131 (753)
T ss_dssp EEEEEETT----EEE-----EEEEE-----CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred EEEECCCC----ccc-----ccccc-----cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEee
Confidence 88876541 110 11112 223457888887766446789999999999999864
No 41
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.49 E-value=0.081 Score=50.94 Aligned_cols=258 Identities=16% Similarity=0.117 Sum_probs=140.4
Q ss_pred eEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEecCCCCCcchhhhhhc
Q 035748 181 YVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWSSLVIENV 259 (655)
Q Consensus 181 Y~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~~ 259 (655)
++++|...|.|++++.+ |.....+......+|++ +++. .+...|++|..||.|.+..+. .+. ..
T Consensus 105 ~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~-v~~s---~~~~~l~~~~~dg~i~iwd~~---~~~--------~~ 169 (401)
T 4aez_A 105 NVVAVALERNVYVWNADSGSVSALAETDESTYVAS-VKWS---HDGSFLSVGLGNGLVDIYDVE---SQT--------KL 169 (401)
T ss_dssp SEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEE-EEEC---TTSSEEEEEETTSCEEEEETT---TCC--------EE
T ss_pred CEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEE-EEEC---CCCCEEEEECCCCeEEEEECc---CCe--------EE
Confidence 35666688999999776 88777777767889998 4443 478899999999998765442 111 11
Q ss_pred cccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC--CeEEEEEeccCCCce---EEEee--eeeeeeecC
Q 035748 260 GKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN--GMVHGTAAMLSSKPL---VFLKQ--RLLFLTECG 332 (655)
Q Consensus 260 r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren--Gtl~G~aa~~~Srpl---aFlkQ--rllfLTe~G 332 (655)
+.+ .....+|+.+.. ...+++++..+|.|.+|.-. +...... .....++ +|-.. .++.-+..|
T Consensus 170 ~~~-----~~~~~~v~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~ 239 (401)
T 4aez_A 170 RTM-----AGHQARVGCLSW----NRHVLSSGSRSGAIHHHDVRIANHQIGTL-QGHSSEVCGLAWRSDGLQLASGGNDN 239 (401)
T ss_dssp EEE-----CCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEe-----cCCCCceEEEEE----CCCEEEEEcCCCCEEEEecccCcceeeEE-cCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence 222 133457777766 23699999999999999874 4444444 3333333 33332 233333334
Q ss_pred ccc-cccccCcccccccCCCCcccceeeeccccccceeeeec--cCCcEEEEEEecCccccceEEeeeccccCCc-c--c
Q 035748 333 AGS-LDLRTMKLRETECEGLNNSLVRNYVFDATERSKAYGYT--SEGDLIHVLLLGDVTNFKCRVRSKRKFDMSE-P--L 406 (655)
Q Consensus 333 aas-lDLrtm~vr~~pCeGLN~S~i~syaFD~~~rsKaYG~T--~~G~Li~v~l~gD~~~~~CrVRs~~k~d~~~-p--v 406 (655)
.-. .|+++.+.... ..+ ....+.+.+|.+....-+.--. .+|. |++| |...-+|...- +... . +
T Consensus 240 ~v~iwd~~~~~~~~~-~~~-~~~~v~~~~~~p~~~~ll~~~~gs~d~~-i~i~---d~~~~~~~~~~----~~~~~v~~~ 309 (401)
T 4aez_A 240 VVQIWDARSSIPKFT-KTN-HNAAVKAVAWCPWQSNLLATGGGTMDKQ-IHFW---NAATGARVNTV----DAGSQVTSL 309 (401)
T ss_dssp CEEEEETTCSSEEEE-ECC-CSSCCCEEEECTTSTTEEEEECCTTTCE-EEEE---ETTTCCEEEEE----ECSSCEEEE
T ss_pred eEEEccCCCCCccEE-ecC-CcceEEEEEECCCCCCEEEEecCCCCCE-EEEE---ECCCCCEEEEE----eCCCcEEEE
Confidence 332 27766432211 111 2345667777765443322111 2343 3333 22222232211 1211 1 2
Q ss_pred ceeeeceeEEEEe---cceEEEEEeeceeeeccCCCccccccChHHHHHhhccccccccccccccccCCceEEecCCceE
Q 035748 407 AFQAIKGYLLVVC---EEKIFVYNVSAQHYVRSGGPRLLFSAGLDEIRSSFLNYQVMDVDVNDEKRRSVPLIASDRDKLL 483 (655)
Q Consensus 407 alqaIKGYlLvas---~~~V~VyNvTsq~y~Rv~~PR~Lfsa~L~~i~s~Fl~~~~~~~~~~~~~~a~~PLIASdRekLV 483 (655)
++..-..|+++++ ...|.+|++.+..... ++. + ..+ .....-+.-+..++++
T Consensus 310 ~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~------~~~--~-------~~h----------~~~v~~~~~s~dg~~l 364 (401)
T 4aez_A 310 IWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTK------QVD--I-------PAH----------DTRVLYSALSPDGRIL 364 (401)
T ss_dssp EECSSSSEEEEEECTTTCEEEEEEEETTEEEE------EEE--E-------ECC----------SSCCCEEEECTTSSEE
T ss_pred EECCCCCeEEEEeecCCCcEEEEecCCcccee------EEE--e-------cCC----------CCCEEEEEECCCCCEE
Confidence 2222234666654 5889999988732111 110 0 000 1112223344556678
Q ss_pred EEeeCCcEEEEEecC
Q 035748 484 VLGLGGGYVGMYRSN 498 (655)
Q Consensus 484 VlglgdGyVa~YrS~ 498 (655)
+.+-.||.|-+|+-.
T Consensus 365 ~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 365 STAASDENLKFWRVY 379 (401)
T ss_dssp EEECTTSEEEEEECC
T ss_pred EEEeCCCcEEEEECC
Confidence 888899999999743
No 42
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=97.46 E-value=0.0091 Score=58.58 Aligned_cols=204 Identities=13% Similarity=0.142 Sum_probs=116.1
Q ss_pred ceeeeeeecCCccceeeeccCCCCCCcceeEEeecccceEEEEccC-----------CceEEEEecCCCCCeeEEEEeee
Q 035748 152 FQFVSAVKLESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-----------GDVSVEFYTMSELPVTAMVSYVS 220 (655)
Q Consensus 152 F~fvSAvklda~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-----------GDvl~E~~T~~~spVTAm~SYls 220 (655)
|+...-..-...|+++.+.|.. .+++|+|...|.|++++-. +..+..+.. -..+|++| ++.
T Consensus 119 ~~~~~~~~h~~~v~~l~~~p~~-----~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l-~~~- 190 (430)
T 2xyi_A 119 IEIEIKINHEGEVNRARYMPQN-----ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRG-HQKEGYGL-SWN- 190 (430)
T ss_dssp EEEEEEEEESSCCSEEEEETTE-----EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEEC-CSSCCCCE-EEC-
T ss_pred eEEEEEEcCCCcEEEEEECCCC-----CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecC-CCCCeEEE-EeC-
Confidence 4444445557899999999952 4799999999999999654 455555543 35678884 432
Q ss_pred eeccee-EEEeeecCceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEE
Q 035748 221 VYKNES-VLVTGHENGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRV 299 (655)
Q Consensus 221 vrRNeT-~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~V 299 (655)
.+.. +|+||..||.|.+..+...... .+ .+...+.+ .....+|+.+..+.- ...+++++..+|.|++
T Consensus 191 --~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~---~~~~~~~~-----~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i 258 (430)
T 2xyi_A 191 --PNLNGYLLSASDDHTICLWDINATPKE-HR---VIDAKNIF-----TGHTAVVEDVAWHLL-HESLFGSVADDQKLMI 258 (430)
T ss_dssp --TTSTTEEEEECTTSCEEEEETTSCCBG-GG---EEECSEEE-----CCCSSCEEEEEECSS-CTTEEEEEETTSEEEE
T ss_pred --CCCCCeEEEEeCCCeEEEEeCCCCCCC-Cc---eeccceee-----cCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEE
Confidence 3444 9999999999988776542111 00 00101122 123456777766543 3468888999999999
Q ss_pred EeeC-C---eEEEEEeccC---CCceEEEee-e-eeeeee-cC-ccccccccCcccccccCCCCcccceeeeccccccce
Q 035748 300 FKEN-G---MVHGTAAMLS---SKPLVFLKQ-R-LLFLTE-CG-AGSLDLRTMKLRETECEGLNNSLVRNYVFDATERSK 368 (655)
Q Consensus 300 Fren-G---tl~G~aa~~~---SrplaFlkQ-r-llfLTe-~G-aaslDLrtm~vr~~pCeGLN~S~i~syaFD~~~rsK 368 (655)
|+-. + ...... ... .+-++|-+. . +++.++ .| +...|+++.+.......+ ....+.+..|.+..+..
T Consensus 259 ~d~~~~~~~~~~~~~-~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~-h~~~v~~i~~sp~~~~~ 336 (430)
T 2xyi_A 259 WDTRNNNTSKPSHTV-DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES-HKDEIFQVQWSPHNETI 336 (430)
T ss_dssp EETTCSCSSSCSEEE-ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC-CSSCEEEEEECSSCTTE
T ss_pred EECCCCCCCcceeEe-ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec-CCCCEEEEEECCCCCCE
Confidence 9874 2 222222 122 234555543 2 333332 23 223378775422222121 13456677777765543
Q ss_pred eeeeccCCc
Q 035748 369 AYGYTSEGD 377 (655)
Q Consensus 369 aYG~T~~G~ 377 (655)
...-..+|.
T Consensus 337 l~s~~~d~~ 345 (430)
T 2xyi_A 337 LASSGTDRR 345 (430)
T ss_dssp EEEEETTSC
T ss_pred EEEEeCCCc
Confidence 333334443
No 43
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=97.46 E-value=0.006 Score=56.98 Aligned_cols=118 Identities=8% Similarity=0.046 Sum_probs=78.7
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccCCc--eEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRNGD--VSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVIL 238 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~GD--vl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~ 238 (655)
+.+|+|+.+-|- .+|+|+|...|.|.+++.++. ........-..+|+++ ++. .+..+|+||..||.|.
T Consensus 11 ~~~v~~~~~s~~------g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~-~~s---~~~~~l~s~s~d~~v~ 80 (377)
T 3dwl_C 11 PKPSYEHAFNSQ------RTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCV-DWA---PKSNRIVTCSQDRNAY 80 (377)
T ss_dssp SSCCSCCEECSS------SSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEE-EEC---TTTCCEEEEETTSSEE
T ss_pred CCcEEEEEECCC------CCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEE-EEe---CCCCEEEEEeCCCeEE
Confidence 578999999883 259999999999999987743 3333334557889984 432 4678999999999998
Q ss_pred EEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC
Q 035748 239 IHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN 303 (655)
Q Consensus 239 ~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren 303 (655)
+..+... ..+.. ...+ .....+|+.+.+.. ..++++++..+|.|.+|.-+
T Consensus 81 vwd~~~~---~~~~~-----~~~~-----~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~ 130 (377)
T 3dwl_C 81 VYEKRPD---GTWKQ-----TLVL-----LRLNRAATFVRWSP--NEDKFAVGSGARVISVCYFE 130 (377)
T ss_dssp EC---------CCCC-----EEEC-----CCCSSCEEEEECCT--TSSCCEEEESSSCEEECCC-
T ss_pred EEEcCCC---Cceee-----eeEe-----cccCCceEEEEECC--CCCEEEEEecCCeEEEEEEC
Confidence 7766541 11110 0111 12345688877665 44589999999999999764
No 44
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=97.46 E-value=0.006 Score=57.50 Aligned_cols=203 Identities=10% Similarity=0.071 Sum_probs=111.3
Q ss_pred eCcccc--ccceeeeeeecCCccceeeeccCCC----CCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEE
Q 035748 144 YSPFWS--ERFQFVSAVKLESDPTCINILPFRD----YEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMV 216 (655)
Q Consensus 144 r~p~WS--erF~fvSAvklda~aTal~vLP~r~----~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~ 216 (655)
..|.|- +.++++.+......+.. .|+.. .-.-.+++|.|...|.|.+++.+ |..+..+. ..+|+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~---~~~v~~~~ 83 (343)
T 3lrv_A 10 KAPKWPILKNLELLQAQNYSRNIKT---FPYKELNKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT---TPNPRTGG 83 (343)
T ss_dssp -CCCCCCCCEEEEEEEEECCTTSEE---CCEEEECSSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE---EECCCTTC
T ss_pred cCCCCchhhcceeEEEEeccccccc---CChhhhhhhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe---cCCceeee
Confidence 456663 56777777666554433 23221 11235789999999999999765 88888777 34566543
Q ss_pred EeeeeecceeEEEeeecCceEEEEEEEecCCCCC-cchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCC
Q 035748 217 SYVSVYKNESVLVTGHENGVILIHKVYEKPNGED-WSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASG 295 (655)
Q Consensus 217 SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD-~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasG 295 (655)
.. . + ++||..||.|.+..+.. ... |..-..+..+.+ .. ....+|+.+.++.--..+|++++..+|
T Consensus 84 ~~--~--~---~~s~s~D~~i~~w~~~~---~~~~~~~~~~~~~~~~---~~-~~~~~v~~~~~~~~~~~~~l~s~s~dg 149 (343)
T 3lrv_A 84 EH--P--A---IISRGPCNRLLLLYPGN---QITILDSKTNKVLREI---EV-DSANEIIYMYGHNEVNTEYFIWADNRG 149 (343)
T ss_dssp CC--C--S---EEEECSTTEEEEEETTT---EEEEEETTTCCEEEEE---EC-CCSSCEEEEECCC---CCEEEEEETTC
T ss_pred eC--C--c---eEEecCCCeEEEEEccC---ceEEeecCCcceeEEe---ec-CCCCCEEEEEcCCCCCCCEEEEEeCCC
Confidence 32 1 2 99999999997653211 000 000000001122 11 123478888877644567999999999
Q ss_pred cEEEEee-CCeEEEEEecc---CCCceEEEeeeeeeee--ecCccc-cccccCcccccccCCCCcccceeeecccccc
Q 035748 296 KIRVFKE-NGMVHGTAAML---SSKPLVFLKQRLLFLT--ECGAGS-LDLRTMKLRETECEGLNNSLVRNYVFDATER 366 (655)
Q Consensus 296 rV~VFre-nGtl~G~aa~~---~SrplaFlkQrllfLT--e~Gaas-lDLrtm~vr~~pCeGLN~S~i~syaFD~~~r 366 (655)
.|++|.- .|...-..... ...-++|-...-++.| +-|.-. .|+++.+......++-....+.+.+|.+...
T Consensus 150 ~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~ 227 (343)
T 3lrv_A 150 TIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGY 227 (343)
T ss_dssp CEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSS
T ss_pred cEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCC
Confidence 9999996 45554333011 1234555554333333 333332 2777765442222221234666777766443
No 45
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=97.46 E-value=0.023 Score=52.59 Aligned_cols=282 Identities=9% Similarity=0.091 Sum_probs=149.1
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEe------------cCCCCCeeEEEEeeeeecceeE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFY------------TMSELPVTAMVSYVSVYKNESV 227 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~------------T~~~spVTAm~SYlsvrRNeT~ 227 (655)
...|+|+.+-|.. .+|+|+|...|.|.+++.+ +.....+. .....+|++|. +. . .+..+
T Consensus 43 ~~~v~~~~~s~~~-----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~-~-~~~~~ 114 (408)
T 4a11_B 43 GGGINTLDIEPVE-----GRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQ-WY-P-HDTGM 114 (408)
T ss_dssp SSCEEEEEECTTT-----CCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEE-EC-T-TCTTC
T ss_pred CCcEEEEEEecCC-----CCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEE-Ec-c-CCCcE
Confidence 5788899888742 3699999999999999766 54433332 23578899854 32 2 26679
Q ss_pred EEeeecCceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecC-ceeEEEEeeCCCcEEEEeeC-Ce
Q 035748 228 LVTGHENGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIG-RMRYILSADASGKIRVFKEN-GM 305 (655)
Q Consensus 228 lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvG-r~RYVlsaDasGrV~VFren-Gt 305 (655)
|+||..||.|.+..+.. + +....+ . -..++..+.+...+ ...+++++..+|.|.+|.-. +.
T Consensus 115 l~s~~~d~~i~iwd~~~---~--------~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 177 (408)
T 4a11_B 115 FTSSSFDKTLKVWDTNT---L--------QTADVF---N---FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS 177 (408)
T ss_dssp EEEEETTSEEEEEETTT---T--------EEEEEE---E---CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC
T ss_pred EEEEeCCCeEEEeeCCC---C--------ccceec---c---CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc
Confidence 99999999998765432 1 111112 1 12345555555554 34489999999999999864 65
Q ss_pred EEEEEeccCCCc---eEEEee-e-ee-eeeecCcccc-ccccCcc--ccccc----------C--CCCcccceeeecccc
Q 035748 306 VHGTAAMLSSKP---LVFLKQ-R-LL-FLTECGAGSL-DLRTMKL--RETEC----------E--GLNNSLVRNYVFDAT 364 (655)
Q Consensus 306 l~G~aa~~~Srp---laFlkQ-r-ll-fLTe~Gaasl-DLrtm~v--r~~pC----------e--GLN~S~i~syaFD~~ 364 (655)
..... .....+ ++|-.. . ++ .-+..|.-.+ |+++... ..... . .-....+...+|.+.
T Consensus 178 ~~~~~-~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 256 (408)
T 4a11_B 178 CSHIL-QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD 256 (408)
T ss_dssp CCEEE-CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT
T ss_pred eeeee-cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC
Confidence 55555 333333 344332 2 23 2333343322 6665321 11000 0 112344666777764
Q ss_pred ccceeeeeccCCcEEEEEEecCccccceEEeeecc--ccCCc----ccceeeeceeEEEEecceEEEEEeeceeeeccCC
Q 035748 365 ERSKAYGYTSEGDLIHVLLLGDVTNFKCRVRSKRK--FDMSE----PLAFQAIKGYLLVVCEEKIFVYNVSAQHYVRSGG 438 (655)
Q Consensus 365 ~rsKaYG~T~~G~Li~v~l~gD~~~~~CrVRs~~k--~d~~~----pvalqaIKGYlLvas~~~V~VyNvTsq~y~Rv~~ 438 (655)
..--+.| ..+|. |++|=.-.. ++......+ ..... .+....-..+++......|.+||+.+..
T Consensus 257 ~~~l~~~-~~dg~-i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~------ 325 (408)
T 4a11_B 257 GLHLLTV-GTDNR-MRLWNSSNG---ENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGE------ 325 (408)
T ss_dssp SSEEEEE-ETTSC-EEEEETTTC---CBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCC------
T ss_pred CCEEEEe-cCCCe-EEEEECCCC---ccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCc------
Confidence 4332222 23333 333322211 111110000 00111 1111223456667777899999987631
Q ss_pred CccccccChHHHHHhhccccccccccccccccCCceEEecCCceEEEeeCCcEEEEEecCCC
Q 035748 439 PRLLFSAGLDEIRSSFLNYQVMDVDVNDEKRRSVPLIASDRDKLLVLGLGGGYVGMYRSNLP 500 (655)
Q Consensus 439 PR~Lfsa~L~~i~s~Fl~~~~~~~~~~~~~~a~~PLIASdRekLVVlglgdGyVa~YrS~LP 500 (655)
.+.. |..+. ....-+--+..+++++.+=.||.|-+|+-+..
T Consensus 326 --~~~~---------~~~~~----------~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 326 --QITM---------LKGHY----------KTVDCCVFQSNFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp --EEEE---------ECCCS----------SCEEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred --ceee---------eccCC----------CeEEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence 1110 11111 11112333445577888889999999987653
No 46
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=97.45 E-value=0.059 Score=50.93 Aligned_cols=134 Identities=13% Similarity=0.160 Sum_probs=79.7
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILI 239 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~ 239 (655)
...|+|+..-|- .+++++|...|.|.+++.. |..+..+. .-..+|++| ++. .+...|+||..||.|.+
T Consensus 139 ~~~v~~~~~~~~------~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~-~~~---~~~~~l~s~~~d~~v~i 207 (420)
T 3vl1_A 139 VSEITKLKFFPS------GEALISSSQDMQLKIWSVKDGSNPRTLI-GHRATVTDI-AII---DRGRNVLSASLDGTIRL 207 (420)
T ss_dssp SSCEEEEEECTT------SSEEEEEETTSEEEEEETTTCCCCEEEE-CCSSCEEEE-EEE---TTTTEEEEEETTSCEEE
T ss_pred cCccEEEEECCC------CCEEEEEeCCCeEEEEeCCCCcCceEEc-CCCCcEEEE-EEc---CCCCEEEEEcCCCcEEE
Confidence 566778777773 3599999999999999765 87776664 457889984 432 47789999999999977
Q ss_pred EEEEecCCCCCcchhhhh--------hccccccc---cCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee-CCeEE
Q 035748 240 HKVYEKPNGEDWSSLVIE--------NVGKYVAT---ENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE-NGMVH 307 (655)
Q Consensus 240 hrV~Es~~gdD~~sLs~e--------~~r~~~~~---e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre-nGtl~ 307 (655)
..+.. +.-...+... .+..+... .......+|+.+.++. ..++++++..+|.|.+|.- ++..-
T Consensus 208 wd~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~ 282 (420)
T 3vl1_A 208 WECGT---GTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT--YGKYVIAGHVSGVITVHNVFSKEQT 282 (420)
T ss_dssp EETTT---TEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC--TTEEEEEEETTSCEEEEETTTCCEE
T ss_pred eECCC---CceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC--CCCEEEEEcCCCeEEEEECCCCcee
Confidence 65431 1100000000 00000000 0001122333333332 3468999999999999986 34443
Q ss_pred EEE
Q 035748 308 GTA 310 (655)
Q Consensus 308 G~a 310 (655)
...
T Consensus 283 ~~~ 285 (420)
T 3vl1_A 283 IQL 285 (420)
T ss_dssp EEE
T ss_pred EEc
Confidence 333
No 47
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=97.43 E-value=0.0046 Score=60.60 Aligned_cols=183 Identities=14% Similarity=0.180 Sum_probs=105.4
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEe-cCCCCCeeEEEEeeeeecceeEEEeeecCceEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFY-TMSELPVTAMVSYVSVYKNESVLVTGHENGVIL 238 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~-T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~ 238 (655)
+..||||..=|..+ .++|+|...|.|.|.+.+ ++..+-+. .+-..+|++| ++ ++ .|...|+||..||.|.
T Consensus 119 ~~~V~~l~~~P~~~-----~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l-~f-~p-~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 119 DRRATSLAWHPTHP-----STVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGL-KF-NP-LNTNQFYASSMEGTTR 190 (435)
T ss_dssp SSCEEEEEECSSCT-----TCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEE-EE-CS-SCTTEEEEECSSSCEE
T ss_pred CCCEEEEEEeCCCC-----CEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEE-EE-eC-CCCCEEEEEeCCCEEE
Confidence 56799999877532 589999999999999765 55444433 3456899994 44 33 3678999999999996
Q ss_pred EEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeCCeEEEEEeccCCCce
Q 035748 239 IHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKENGMVHGTAAMLSSKPL 318 (655)
Q Consensus 239 ~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFrenGtl~G~aa~~~Srpl 318 (655)
+..+. + ...+.+. ........|+.+.+.. ...+|++++.+|.|.+|.-+|..-.+. ..-..+|
T Consensus 191 iwd~~----~--------~~~~~~~--~~~~~~~~~~~~~~~~--~~~~l~~g~~dg~i~~wd~~~~~~~~~-~~h~~~v 253 (435)
T 4e54_B 191 LQDFK----G--------NILRVFA--SSDTINIWFCSLDVSA--SSRMVVTGDNVGNVILLNMDGKELWNL-RMHKKKV 253 (435)
T ss_dssp EEETT----S--------CEEEEEE--CCSSCSCCCCCEEEET--TTTEEEEECSSSBEEEEESSSCBCCCS-BCCSSCE
T ss_pred Eeecc----C--------CceeEEe--ccCCCCccEEEEEECC--CCCEEEEEeCCCcEeeeccCcceeEEE-ecccceE
Confidence 54321 0 0111111 1122233455554443 446899999999999999876543333 2223333
Q ss_pred ---EEEe-eeeeeeeec--Ccc-ccccccCcccccccCCCCc-ccceeeeccccccce
Q 035748 319 ---VFLK-QRLLFLTEC--GAG-SLDLRTMKLRETECEGLNN-SLVRNYVFDATERSK 368 (655)
Q Consensus 319 ---aFlk-QrllfLTe~--Gaa-slDLrtm~vr~~pCeGLN~-S~i~syaFD~~~rsK 368 (655)
+|-. ..-++.|.. |.. .-|+++.+..........| ..+.+.+|++...--
T Consensus 254 ~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l 311 (435)
T 4e54_B 254 THVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARL 311 (435)
T ss_dssp EEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEE
T ss_pred EeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCee
Confidence 3322 122333322 322 2377765543322222222 346667777755433
No 48
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.069 Score=48.50 Aligned_cols=113 Identities=16% Similarity=0.145 Sum_probs=79.8
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEcc-CCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLR-NGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILI 239 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~-~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~ 239 (655)
...|+|+..-|- .+|+|+|...|.|.+++. +|..+..+. .-..+|++| ++. .+...|+||..||.|.+
T Consensus 32 ~~~v~~~~~s~~------~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~-~~~---~~~~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 32 ERPLTQVKYNKE------GDLLFSCSKDSSASVWYSLNGERLGTLD-GHTGTIWSI-DVD---CFTKYCVTGSADYSIKL 100 (369)
T ss_dssp SSCEEEEEECTT------SCEEEEEESSSCEEEEETTTCCEEEEEC-CCSSCEEEE-EEC---TTSSEEEEEETTTEEEE
T ss_pred eceEEEEEEcCC------CCEEEEEeCCCEEEEEeCCCchhhhhhh-hcCCcEEEE-EEc---CCCCEEEEEeCCCeEEE
Confidence 667888888773 359999999999999964 587766655 346789985 332 47789999999999877
Q ss_pred EEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCC-----CcEEEEeeC
Q 035748 240 HKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADAS-----GKIRVFKEN 303 (655)
Q Consensus 240 hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDas-----GrV~VFren 303 (655)
..+.. +. ....+ . ...+|+.+.+.. ..++++++..+ |.|.+|.-+
T Consensus 101 wd~~~---~~--------~~~~~---~---~~~~v~~~~~~~--~~~~l~~~~~~~~~~~g~i~~~d~~ 150 (369)
T 3zwl_B 101 WDVSN---GQ--------CVATW---K---SPVPVKRVEFSP--CGNYFLAILDNVMKNPGSINIYEIE 150 (369)
T ss_dssp EETTT---CC--------EEEEE---E---CSSCEEEEEECT--TSSEEEEEECCBTTBCCEEEEEEEE
T ss_pred EECCC---Cc--------EEEEe---e---cCCCeEEEEEcc--CCCEEEEecCCccCCCCEEEEEEec
Confidence 65421 11 11222 1 344688877665 34578888877 999999874
No 49
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.035 Score=49.55 Aligned_cols=138 Identities=16% Similarity=0.125 Sum_probs=88.7
Q ss_pred ceeEEeecccceEEEEccCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEecCCCCCcchhhhhh
Q 035748 179 SKYVAVGDDKGRVFVFLRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWSSLVIEN 258 (655)
Q Consensus 179 skY~AVGD~~Grv~Vfs~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~ 258 (655)
.+++++|...|.|++++ .+..+..+.. ...+|+.+... + .+...+++|..||.|.+.... ..
T Consensus 114 ~~~l~~~~~d~~i~~~d-~~~~~~~~~~-~~~~v~~~~~~-~--~~~~~l~~~~~d~~i~i~d~~-------------~~ 175 (313)
T 3odt_A 114 DGVVISGSWDKTAKVWK-EGSLVYNLQA-HNASVWDAKVV-S--FSENKFLTASADKTIKLWQND-------------KV 175 (313)
T ss_dssp TTEEEEEETTSEEEEEE-TTEEEEEEEC-CSSCEEEEEEE-E--TTTTEEEEEETTSCEEEEETT-------------EE
T ss_pred CCEEEEEeCCCCEEEEc-CCcEEEeccc-CCCceeEEEEc-c--CCCCEEEEEECCCCEEEEecC-------------ce
Confidence 35899999999999998 7776666654 47889885543 2 367789999999999776410 11
Q ss_pred ccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC-CeEEEEEeccCCCc---eEEEee-eeeeeeecCc
Q 035748 259 VGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN-GMVHGTAAMLSSKP---LVFLKQ-RLLFLTECGA 333 (655)
Q Consensus 259 ~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren-Gtl~G~aa~~~Srp---laFlkQ-rllfLTe~Ga 333 (655)
.+.+ ......+|+.+.+..-|. ++++..+|.|.+|.-+ +...... .....+ ++|-.. +++.-+..|.
T Consensus 176 ~~~~----~~~~~~~i~~~~~~~~~~---~~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~l~~~~~dg~ 247 (313)
T 3odt_A 176 IKTF----SGIHNDVVRHLAVVDDGH---FISCSNDGLIKLVDMHTGDVLRTY-EGHESFVYCIKLLPNGDIVSCGEDRT 247 (313)
T ss_dssp EEEE----CSSCSSCEEEEEEEETTE---EEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTSCEEEEETTSE
T ss_pred EEEE----eccCcccEEEEEEcCCCe---EEEccCCCeEEEEECCchhhhhhh-hcCCceEEEEEEecCCCEEEEecCCE
Confidence 1122 222456788888877665 8899999999999974 6666555 333333 344333 3333333332
Q ss_pred ccc-ccccCc
Q 035748 334 GSL-DLRTMK 342 (655)
Q Consensus 334 asl-DLrtm~ 342 (655)
-.+ |+++.+
T Consensus 248 v~iwd~~~~~ 257 (313)
T 3odt_A 248 VRIWSKENGS 257 (313)
T ss_dssp EEEECTTTCC
T ss_pred EEEEECCCCc
Confidence 222 665543
No 50
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=97.39 E-value=0.042 Score=50.05 Aligned_cols=122 Identities=15% Similarity=0.175 Sum_probs=80.5
Q ss_pred cCCccceeeeccCCCCCCcceeEEeecc---cceEEEEccC-CceEEEEecCCCCCeeEEEEeeeee-cceeEEEeeecC
Q 035748 160 LESDPTCINILPFRDYEGHSKYVAVGDD---KGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVY-KNESVLVTGHEN 234 (655)
Q Consensus 160 lda~aTal~vLP~r~~~glskY~AVGD~---~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvr-RNeT~lVTGHad 234 (655)
-...|+|+..-|.. .+++++|.. .|.|++++.+ |............+|+++ ++. .. .+..+|++|..|
T Consensus 17 h~~~v~~~~~~p~~-----~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~~~~~l~~~~~d 89 (357)
T 3i2n_A 17 FNYTVFDCKWVPCS-----AKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCG-TFG-ATSLQQRYLATGDFG 89 (357)
T ss_dssp CSSCEEEEEECTTS-----SEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEE-ECT-TCCTTTCCEEEEETT
T ss_pred CCCceEEEEEcCCC-----ceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEE-EEc-CCCCCCceEEEecCC
Confidence 35678888888843 357888876 8999999766 666555555567899984 443 21 115899999999
Q ss_pred ceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEee----cCceeEEEEeeCCCcEEEEeeC
Q 035748 235 GVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHH----IGRMRYILSADASGKIRVFKEN 303 (655)
Q Consensus 235 G~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hr----vGr~RYVlsaDasGrV~VFren 303 (655)
|.|.+..+.. +.. ..+.+ .....+|+.+.... -...++++++..+|.|.||.-.
T Consensus 90 g~i~iwd~~~---~~~-------~~~~~-----~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~ 147 (357)
T 3i2n_A 90 GNLHIWNLEA---PEM-------PVYSV-----KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPR 147 (357)
T ss_dssp SCEEEECTTS---CSS-------CSEEE-----CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTT
T ss_pred CeEEEEeCCC---CCc-------cEEEE-----EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCC
Confidence 9987654432 110 11222 13345677775542 1345689999999999999874
No 51
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=97.36 E-value=0.012 Score=56.32 Aligned_cols=234 Identities=14% Similarity=0.169 Sum_probs=122.8
Q ss_pred eeEEeecccceEEEEccC--CceEEEE--ecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEecCCCCCcchhh
Q 035748 180 KYVAVGDDKGRVFVFLRN--GDVSVEF--YTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWSSLV 255 (655)
Q Consensus 180 kY~AVGD~~Grv~Vfs~~--GDvl~E~--~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs 255 (655)
.+++.|...|.|.|++-+ |.+.-.. ..+-..+|++| ++. . .+..+|+||..||.|.+..+.....-.. +.
T Consensus 48 ~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~-~~~-p-~~~~~l~s~s~dg~v~vw~~~~~~~~~~---~~ 121 (402)
T 2aq5_A 48 ALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDI-AWC-P-HNDNVIASGSEDCTVMVWEIPDGGLVLP---LR 121 (402)
T ss_dssp EEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEE-EEC-T-TCTTEEEEEETTSEEEEEECCTTCCSSC---BC
T ss_pred EEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEE-EeC-C-CCCCEEEEEeCCCeEEEEEccCCCCccc---cC
Confidence 344558889999999753 4321111 23456789984 332 2 1788999999999997766543111000 00
Q ss_pred hhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee-CCeEEEEEe-ccCCCc---eEEEee--eeeee
Q 035748 256 IENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE-NGMVHGTAA-MLSSKP---LVFLKQ--RLLFL 328 (655)
Q Consensus 256 ~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre-nGtl~G~aa-~~~Srp---laFlkQ--rllfL 328 (655)
+....+ .+...+|+.+.++.-| ..+++++..+|.|.||.- +|..-.+.. .....+ ++|-.. .++.-
T Consensus 122 -~~~~~~-----~~h~~~v~~~~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 194 (402)
T 2aq5_A 122 -EPVITL-----EGHTKRVGIVAWHPTA-QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTS 194 (402)
T ss_dssp -SCSEEE-----ECCSSCEEEEEECSSB-TTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEE
T ss_pred -CceEEe-----cCCCCeEEEEEECcCC-CCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEE
Confidence 111222 1234578888777554 358889999999999996 466555541 112223 343332 23333
Q ss_pred eecCccc-cccccCcccccccCCCCcccceeeeccccccceeeee--ccCCcEEEEEEecCccccceEEeeeccccCCc-
Q 035748 329 TECGAGS-LDLRTMKLRETECEGLNNSLVRNYVFDATERSKAYGY--TSEGDLIHVLLLGDVTNFKCRVRSKRKFDMSE- 404 (655)
Q Consensus 329 Te~Gaas-lDLrtm~vr~~pCeGLN~S~i~syaFD~~~rsKaYG~--T~~G~Li~v~l~gD~~~~~CrVRs~~k~d~~~- 404 (655)
+..|.-. .|+++.+....--.+-.+..+...+|.+..+--+.|+ +.+| -|.+| |....++.+... ..+...
T Consensus 195 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~-~i~iw---d~~~~~~~~~~~-~~~~~~~ 269 (402)
T 2aq5_A 195 CRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSER-QVALW---DTKHLEEPLSLQ-ELDTSSG 269 (402)
T ss_dssp ETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCE-EEEEE---ETTBCSSCSEEE-ECCCCSS
T ss_pred ecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCc-eEEEE---cCccccCCceEE-eccCCCc
Confidence 3333222 2777654332211233344567778887766555555 3333 33444 222222211111 111222
Q ss_pred ccce--eeeceeEEEEe--cceEEEEEeece
Q 035748 405 PLAF--QAIKGYLLVVC--EEKIFVYNVSAQ 431 (655)
Q Consensus 405 pval--qaIKGYlLvas--~~~V~VyNvTsq 431 (655)
...+ ..-..||+++. ...|.+|++.+.
T Consensus 270 v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~ 300 (402)
T 2aq5_A 270 VLLPFFDPDTNIVYLCGKGDSSIRYFEITSE 300 (402)
T ss_dssp CEEEEEETTTTEEEEEETTCSCEEEEEECSS
T ss_pred eeEEEEcCCCCEEEEEEcCCCeEEEEEecCC
Confidence 2222 22234666554 467999999874
No 52
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=97.35 E-value=0.11 Score=49.12 Aligned_cols=123 Identities=15% Similarity=0.132 Sum_probs=79.7
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccCC-c------eEEEEecCCCCCeeEEEEeeeeecceeEEEeeec
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRNG-D------VSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHE 233 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~G-D------vl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHa 233 (655)
...|+|+..-+......-.+++|.|...|.|.+.+... . ......++-..+|+++ ++ ..+.++|+||..
T Consensus 21 ~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~-~~---~~~~~~l~s~s~ 96 (343)
T 2xzm_R 21 SDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDL-AL---SQENCFAISSSW 96 (343)
T ss_dssp SSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEE-EE---CSSTTEEEEEET
T ss_pred hhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEE-EE---CCCCCEEEEEcC
Confidence 45677877633322222357999999999999997542 1 1222234556789884 33 247789999999
Q ss_pred CceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeCCe
Q 035748 234 NGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKENGM 305 (655)
Q Consensus 234 dG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFrenGt 305 (655)
||.|.+..+.. +. ..+.|. +-..+|+.+.++.-| ++++++..+|.|++|.-.+.
T Consensus 97 D~~v~lwd~~~---~~--------~~~~~~-----~h~~~v~~v~~sp~~--~~l~s~~~d~~i~~wd~~~~ 150 (343)
T 2xzm_R 97 DKTLRLWDLRT---GT--------TYKRFV-----GHQSEVYSVAFSPDN--RQILSAGAEREIKLWNILGE 150 (343)
T ss_dssp TSEEEEEETTS---SC--------EEEEEE-----CCCSCEEEEEECSST--TEEEEEETTSCEEEEESSSC
T ss_pred CCcEEEEECCC---Cc--------EEEEEc-----CCCCcEEEEEECCCC--CEEEEEcCCCEEEEEeccCC
Confidence 99997655422 11 112231 223468888776544 58999999999999987543
No 53
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=97.33 E-value=0.016 Score=56.32 Aligned_cols=120 Identities=15% Similarity=0.158 Sum_probs=81.6
Q ss_pred eeeeecCCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEe---cCCCCCeeEEEEeeeeecceeEEEe
Q 035748 155 VSAVKLESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFY---TMSELPVTAMVSYVSVYKNESVLVT 230 (655)
Q Consensus 155 vSAvklda~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~---T~~~spVTAm~SYlsvrRNeT~lVT 230 (655)
.+..+.++.|+|+...|- +++++|...|.|.+.+.+ |..+.... .+-..+|++ +++. .+.+.|+|
T Consensus 76 ~~~~~~~~~v~~~~~s~d-------~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~-v~~s---pdg~~l~s 144 (344)
T 4gqb_B 76 SAGVQTEAGVADLTWVGE-------RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVST-VSVL---SSGTQAVS 144 (344)
T ss_dssp SEEEEESSCEEEEEEETT-------TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEE-EEEC---TTSSEEEE
T ss_pred eeeeccCCCEEEEEEeCC-------CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEE-EEEC---CCCCEEEE
Confidence 344566788999988873 368899999999999765 76554433 244678998 4543 47889999
Q ss_pred eecCceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee
Q 035748 231 GHENGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE 302 (655)
Q Consensus 231 GHadG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre 302 (655)
|..||.|.+..+. .+. -++.| .+-..+|+.+.++.-+ ..+++++..+|.|+||.-
T Consensus 145 gs~d~~i~iwd~~---~~~--------~~~~~-----~~h~~~V~~~~~~~~~-~~~l~s~s~D~~v~iwd~ 199 (344)
T 4gqb_B 145 GSKDICIKVWDLA---QQV--------VLSSY-----RAHAAQVTCVAASPHK-DSVFLSCSEDNRILLWDT 199 (344)
T ss_dssp EETTSCEEEEETT---TTE--------EEEEE-----CCCSSCEEEEEECSSC-TTEEEEEETTSCEEEEET
T ss_pred EeCCCeEEEEECC---CCc--------EEEEE-----cCcCCceEEEEecCCC-CCceeeeccccccccccc
Confidence 9999998665432 111 11223 1223578887765544 346788999999999964
No 54
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=97.33 E-value=0.083 Score=50.31 Aligned_cols=131 Identities=11% Similarity=0.045 Sum_probs=82.3
Q ss_pred ceeeeeeecCCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEe----cCCCCCeeEEEEeeeeeccee
Q 035748 152 FQFVSAVKLESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFY----TMSELPVTAMVSYVSVYKNES 226 (655)
Q Consensus 152 F~fvSAvklda~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~----T~~~spVTAm~SYlsvrRNeT 226 (655)
++.+.-++.+..+.|+.+-| . .+++++|...|.|++++.+ |.++.... .....+|+++.. ..+..
T Consensus 113 ~~~~~~~~~~~~~~~~~~s~-~-----~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~----~~~~~ 182 (433)
T 3bws_A 113 HRFISRFKTGFQPKSVRFID-N-----TRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISI----PEHNE 182 (433)
T ss_dssp EEEEEEEECSSCBCCCEESS-S-----SEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEE----GGGTE
T ss_pred ceEEEEEcCCCCceEEEEeC-C-----CeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEE----cCCCE
Confidence 44555566677778888777 2 2678888888999999877 77664322 233457776432 35788
Q ss_pred EEEeeecCceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEE-eeCCCcEEEEee-CC
Q 035748 227 VLVTGHENGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILS-ADASGKIRVFKE-NG 304 (655)
Q Consensus 227 ~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVls-aDasGrV~VFre-nG 304 (655)
++++|..||.|.+..+. .+. ..+.+. ..+..+..+.+..-|+ ++++ +..+|.|.+|.. +|
T Consensus 183 ~~~s~~~d~~v~~~d~~---~~~--------~~~~~~-----~~~~~~~~~~~~~~~~--~l~~~~~~~~~i~~~d~~~~ 244 (433)
T 3bws_A 183 LWVSQMQANAVHVFDLK---TLA--------YKATVD-----LTGKWSKILLYDPIRD--LVYCSNWISEDISVIDRKTK 244 (433)
T ss_dssp EEEEEGGGTEEEEEETT---TCC--------EEEEEE-----CSSSSEEEEEEETTTT--EEEEEETTTTEEEEEETTTT
T ss_pred EEEEECCCCEEEEEECC---Cce--------EEEEEc-----CCCCCeeEEEEcCCCC--EEEEEecCCCcEEEEECCCC
Confidence 99999999998765431 111 111221 2334567766654443 4444 447899999986 56
Q ss_pred eEEEEE
Q 035748 305 MVHGTA 310 (655)
Q Consensus 305 tl~G~a 310 (655)
..-...
T Consensus 245 ~~~~~~ 250 (433)
T 3bws_A 245 LEIRKT 250 (433)
T ss_dssp EEEEEC
T ss_pred cEEEEe
Confidence 665544
No 55
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.084 Score=51.79 Aligned_cols=127 Identities=11% Similarity=0.089 Sum_probs=84.2
Q ss_pred CCccceeeeccCCCCCCccee-EEeecccceEEEEccC---CceEEEEec-CCCCCeeEEEEeeeeecceeEEEeeecCc
Q 035748 161 ESDPTCINILPFRDYEGHSKY-VAVGDDKGRVFVFLRN---GDVSVEFYT-MSELPVTAMVSYVSVYKNESVLVTGHENG 235 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY-~AVGD~~Grv~Vfs~~---GDvl~E~~T-~~~spVTAm~SYlsvrRNeT~lVTGHadG 235 (655)
...|+|+.+-|. .+| +|+|...|.|.+++.+ |..+..+.. ....+|++ +++ ..+...|++|..||
T Consensus 102 ~~~v~~~~~s~d------~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~~---sp~~~~l~~~~~~g 171 (450)
T 2vdu_B 102 YSYIRNLRLTSD------ESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNA-ISI---AEDDTTVIIADKFG 171 (450)
T ss_dssp CCCEEEEEECTT------SSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEE-EEE---CTTSSEEEEEETTS
T ss_pred CCceEEEEEcCC------CCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceE-EEE---cCCCCEEEEEeCCC
Confidence 556888888774 356 5999999999999654 666655542 34577887 343 24778999999999
Q ss_pred eEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeec-CceeEEEEeeCCCcEEEEeeC-CeEEEE
Q 035748 236 VILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHI-GRMRYILSADASGKIRVFKEN-GMVHGT 309 (655)
Q Consensus 236 ~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrv-Gr~RYVlsaDasGrV~VFren-Gtl~G~ 309 (655)
.|...+++....... ....+. ....+|+.+.+..- ...+|+++++.+|.|+||+-. +..-..
T Consensus 172 ~v~~~~~~~~~~~~~-------~~~~~~-----~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 235 (450)
T 2vdu_B 172 DVYSIDINSIPEEKF-------TQEPIL-----GHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDK 235 (450)
T ss_dssp EEEEEETTSCCCSSC-------CCCCSE-----ECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEE
T ss_pred cEEEEecCCcccccc-------cceeee-----cccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeee
Confidence 996666543111100 011221 12357888877764 336799999999999999974 554433
No 56
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=97.30 E-value=0.095 Score=47.53 Aligned_cols=132 Identities=11% Similarity=0.093 Sum_probs=88.4
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIH 240 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~h 240 (655)
...|+|+.+-|- .+|+++|...|.|.+.................++..+.. ..+...|++|..||.|.+.
T Consensus 86 ~~~V~~~~~s~d------g~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~s~s~d~~~~~~ 155 (340)
T 4aow_A 86 SHFVSDVVISSD------GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAF----SSDNRQIVSGSRDKTIKLW 155 (340)
T ss_dssp SSCEEEEEECTT------SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE----CTTSSCEEEEETTSCEEEE
T ss_pred CCCEEEEEECCC------CCEEEEEcccccceEEeecccceeeeecCCCCceeEEEE----eecCccceeecCCCeEEEE
Confidence 456777777662 369999999999999988866566655555666665322 2467789999999998754
Q ss_pred EEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee-CCeEEEEEeccCCCce
Q 035748 241 KVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE-NGMVHGTAAMLSSKPL 318 (655)
Q Consensus 241 rV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre-nGtl~G~aa~~~Srpl 318 (655)
.+.. . ... ..........|..+.+..-+...+++++..+|.|++|.. ++.+--.. ..-..+|
T Consensus 156 d~~~---~-----------~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~-~~h~~~v 218 (340)
T 4aow_A 156 NTLG---V-----------CKY-TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH-IGHTGYL 218 (340)
T ss_dssp CTTS---C-----------EEE-EECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCE
T ss_pred EeCC---C-----------ceE-EEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEe-cCCCCcE
Confidence 2210 0 000 001123345677777777788889999999999999987 46665555 4434444
No 57
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=97.30 E-value=0.02 Score=55.69 Aligned_cols=190 Identities=16% Similarity=0.170 Sum_probs=105.7
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILI 239 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~ 239 (655)
...|+|+.+.|- .+++|.|...|.|.+++.. |..+..+. +-..+|+++.. +. .+.++++||..||.|.+
T Consensus 127 ~~~V~~v~~spd------g~~l~sgs~d~~i~iwd~~~~~~~~~~~-~h~~~V~~~~~--~~-~~~~~l~s~s~D~~v~i 196 (344)
T 4gqb_B 127 DDIVSTVSVLSS------GTQAVSGSKDICIKVWDLAQQVVLSSYR-AHAAQVTCVAA--SP-HKDSVFLSCSEDNRILL 196 (344)
T ss_dssp SSCEEEEEECTT------SSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEE--CS-SCTTEEEEEETTSCEEE
T ss_pred CCCEEEEEECCC------CCEEEEEeCCCeEEEEECCCCcEEEEEc-CcCCceEEEEe--cC-CCCCceeeecccccccc
Confidence 346788877773 3699999999999999766 77665554 44688998543 22 35679999999999965
Q ss_pred EEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee-CCeEEEEEeccCCC--
Q 035748 240 HKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE-NGMVHGTAAMLSSK-- 316 (655)
Q Consensus 240 hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre-nGtl~G~aa~~~Sr-- 316 (655)
..+. .+.- .+.+ .....+..|+.+-+ +....++++++..+|.|+||.- +|....+. ..-..
T Consensus 197 wd~~---~~~~--------~~~~---~~~~~~~~~~~~~~-~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~-~~h~~~v 260 (344)
T 4gqb_B 197 WDTR---CPKP--------ASQI---GCSAPGYLPTSLAW-HPQQSEVFVFGDENGTVSLVDTKSTSCVLSS-AVHSQCV 260 (344)
T ss_dssp EETT---SSSC--------EEEC---C----CCCEEEEEE-CSSCTTEEEEEETTSEEEEEESCC--CCEEE-ECCSSCE
T ss_pred cccc---ccce--------eeee---ecceeeccceeeee-cCCCCcceEEeccCCcEEEEECCCCcEEEEE-cCCCCCE
Confidence 4332 2211 1112 12233445666544 3445568888999999999976 45544444 23223
Q ss_pred -ceEEEee--eeee-eeecCccc-cccccCcccccccCCCCcccceeeeccccccceeeeeccCCcEE
Q 035748 317 -PLVFLKQ--RLLF-LTECGAGS-LDLRTMKLRETECEGLNNSLVRNYVFDATERSKAYGYTSEGDLI 379 (655)
Q Consensus 317 -plaFlkQ--rllf-LTe~Gaas-lDLrtm~vr~~pCeGLN~S~i~syaFD~~~rsKaYG~T~~G~Li 379 (655)
-|+|-.. ++|. -.+-|... -|+++-++... .|- ...|.+.+|.+..+.-+..-..||.++
T Consensus 261 ~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~--~~H-~~~V~~v~~sp~~~~llas~s~D~~v~ 325 (344)
T 4gqb_B 261 TGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS--QAH-RDFVRDATWSPLNHSLLTTVGWDHQVV 325 (344)
T ss_dssp EEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEE--CCC-SSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred EEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEE--cCC-CCCEEEEEEeCCCCeEEEEEcCCCeEE
Confidence 3444432 3332 12223222 26655443322 121 124566667665554444444455543
No 58
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.05 Score=51.23 Aligned_cols=179 Identities=9% Similarity=0.039 Sum_probs=96.8
Q ss_pred EEeecccceEEEEccCC----------ceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEecCCCCCc
Q 035748 182 VAVGDDKGRVFVFLRNG----------DVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDW 251 (655)
Q Consensus 182 ~AVGD~~Grv~Vfs~~G----------Dvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~ 251 (655)
++.|...|.|.+.+.++ .++-.+......+|++|. +. ..-+..+++||..||.|.+..+.. +.-
T Consensus 88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~-~~~~~~~l~s~s~dg~i~~wd~~~---~~~- 161 (343)
T 3lrv_A 88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMY-GH-NEVNTEYFIWADNRGTIGFQSYED---DSQ- 161 (343)
T ss_dssp EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEE-CC-C---CCEEEEEETTCCEEEEESSS---SCE-
T ss_pred eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEE-cC-CCCCCCEEEEEeCCCcEEEEECCC---CcE-
Confidence 77777778888876554 446666666667899843 32 322678999999999998776542 110
Q ss_pred chhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC-CeEE-EEEecc-CCCce---EEEee-e
Q 035748 252 SSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN-GMVH-GTAAML-SSKPL---VFLKQ-R 324 (655)
Q Consensus 252 ~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren-Gtl~-G~aa~~-~Srpl---aFlkQ-r 324 (655)
.+.+ ......+|+.+.++. ...+++++..+|.|+||.-. +... ..+ .. -..++ +|-.. .
T Consensus 162 -------~~~~----~~~~~~~i~~~~~~p--dg~~lasg~~dg~i~iwd~~~~~~~~~~~-~~~h~~~v~~l~fs~~g~ 227 (343)
T 3lrv_A 162 -------YIVH----SAKSDVEYSSGVLHK--DSLLLALYSPDGILDVYNLSSPDQASSRF-PVDEEAKIKEVKFADNGY 227 (343)
T ss_dssp -------EEEE----CCCSSCCCCEEEECT--TSCEEEEECTTSCEEEEESSCTTSCCEEC-CCCTTSCEEEEEECTTSS
T ss_pred -------EEEE----ecCCCCceEEEEECC--CCCEEEEEcCCCEEEEEECCCCCCCccEE-eccCCCCEEEEEEeCCCC
Confidence 1111 112233477777765 44689999999999999873 4433 344 22 23344 44332 3
Q ss_pred eeeeeecCc-cccccccCcccc----cccCCCCcccceeeeccccccceeeeeccCCcEEEEE
Q 035748 325 LLFLTECGA-GSLDLRTMKLRE----TECEGLNNSLVRNYVFDATERSKAYGYTSEGDLIHVL 382 (655)
Q Consensus 325 llfLTe~Ga-aslDLrtm~vr~----~pCeGLN~S~i~syaFD~~~rsKaYG~T~~G~Li~v~ 382 (655)
.|+-+..+. -.-|+++.+... ..++.+.-.. .+.+||+..+.-+.|-.++|. |.+|
T Consensus 228 ~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~l~~~s~~d~~-i~v~ 288 (343)
T 3lrv_A 228 WMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGT-VTYDIDDSGKNMIAYSNESNS-LTIY 288 (343)
T ss_dssp EEEEEESSBEEEEETTSSTTCBSSCCCBC-----CC-EEEEECTTSSEEEEEETTTTE-EEEE
T ss_pred EEEEEeCCeEEEEEcCCCCcceeecccccccccccc-eEEEECCCCCEEEEecCCCCc-EEEE
Confidence 444444442 222777654321 1111111111 457777766544444332333 4444
No 59
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=97.27 E-value=0.0018 Score=62.22 Aligned_cols=133 Identities=14% Similarity=0.098 Sum_probs=87.7
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILI 239 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~ 239 (655)
...++|+..-|. .+++++|...|.|.+++.. |..+..+......+|+++...-....+..+|++|..||.|.+
T Consensus 214 ~~~v~~~~~s~~------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~i 287 (437)
T 3gre_A 214 HGAVSSICIDEE------CCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTI 287 (437)
T ss_dssp GCCEEEEEECTT------SCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEE
T ss_pred CCceEEEEECCC------CCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEE
Confidence 357778777553 5799999999999999654 887777765667799996543234467889999999999977
Q ss_pred EEEEe-------cCCCCCcchhhhhhccccc-cc--cCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee
Q 035748 240 HKVYE-------KPNGEDWSSLVIENVGKYV-AT--ENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE 302 (655)
Q Consensus 240 hrV~E-------s~~gdD~~sLs~e~~r~~~-~~--e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre 302 (655)
..+.. ..+......+.....++.. .. ....-..+|+.+.+. -+ ++++++..+|.|+||.-
T Consensus 288 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~--~~l~s~~~d~~i~~wd~ 357 (437)
T 3gre_A 288 WNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND--KILLTDEATSSIVMFSL 357 (437)
T ss_dssp EETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT--EEEEEEGGGTEEEEEET
T ss_pred EEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc--eEEEecCCCCeEEEEEC
Confidence 65531 1111111222222111110 00 111245578888777 33 89999999999999986
No 60
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.25 E-value=0.083 Score=58.23 Aligned_cols=123 Identities=12% Similarity=0.104 Sum_probs=89.0
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILI 239 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~ 239 (655)
...|+|+.+-|- .+|+|+|...|.|.+++.. |..+..+. +-..+|++ +++. .+..+|+||..||.|.+
T Consensus 615 ~~~v~~~~~s~~------~~~l~s~~~d~~i~vw~~~~~~~~~~~~-~h~~~v~~-~~~s---~~~~~l~s~~~d~~v~v 683 (1249)
T 3sfz_A 615 TDAVYHACFSQD------GQRIASCGADKTLQVFKAETGEKLLDIK-AHEDEVLC-CAFS---SDDSYIATCSADKKVKI 683 (1249)
T ss_dssp SSCEEEEEECTT------SSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEE-EEEC---TTSSEEEEEETTSEEEE
T ss_pred cccEEEEEECCC------CCEEEEEeCCCeEEEEECCCCCEEEEec-cCCCCEEE-EEEe---cCCCEEEEEeCCCeEEE
Confidence 456777777662 3699999999999999765 88777766 44778998 4432 47789999999999866
Q ss_pred EEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee-CCeEEEEE
Q 035748 240 HKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE-NGMVHGTA 310 (655)
Q Consensus 240 hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre-nGtl~G~a 310 (655)
..+. .|. .++.+. +...+|+.+.+..-+...+++++..+|.|.||+- +|..-.+.
T Consensus 684 wd~~---~~~--------~~~~~~-----~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~ 739 (1249)
T 3sfz_A 684 WDSA---TGK--------LVHTYD-----EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM 739 (1249)
T ss_dssp EETT---TCC--------EEEEEE-----CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEE
T ss_pred EECC---CCc--------eEEEEc-----CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhee
Confidence 5432 221 122231 2355788888887778889999999999999986 45555555
No 61
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=97.24 E-value=0.02 Score=52.20 Aligned_cols=126 Identities=10% Similarity=0.060 Sum_probs=85.0
Q ss_pred cCCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEe--cCCCCCeeEEEEeeeeecceeEEEeeecCce
Q 035748 160 LESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFY--TMSELPVTAMVSYVSVYKNESVLVTGHENGV 236 (655)
Q Consensus 160 lda~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~--T~~~spVTAm~SYlsvrRNeT~lVTGHadG~ 236 (655)
-..+++|+...|.. .+++++|...|.|.+++.. |..+..+. .....+|++| ++. .+...|++|..||.
T Consensus 114 ~~~~i~~~~~~~~~-----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~-~~~---~~~~~l~~~~~dg~ 184 (366)
T 3k26_A 114 HGNAINELKFHPRD-----PNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA-DYD---LLGEKIMSCGMDHS 184 (366)
T ss_dssp CCSCEEEEEECSSC-----TTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEE-EEC---TTSSEEEEEETTSC
T ss_pred CCCcEEEEEECCCC-----CCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEE-EEC---CCCCEEEEecCCCC
Confidence 36678888887732 3589999999999999765 88777764 4567889884 332 37778999999999
Q ss_pred EEEEEEEecCCCCCcchhhhhhccccc-----------------cccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEE
Q 035748 237 ILIHKVYEKPNGEDWSSLVIENVGKYV-----------------ATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRV 299 (655)
Q Consensus 237 V~~hrV~Es~~gdD~~sLs~e~~r~~~-----------------~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~V 299 (655)
|.+..+... .-...+ .....+. .........+|+.+... | .+++++..+|.|+|
T Consensus 185 i~i~d~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~--~~l~~~~~d~~i~~ 255 (366)
T 3k26_A 185 LKLWRINSK---RMMNAI--KESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G--DLILSKSCENAIVC 255 (366)
T ss_dssp EEEEESCSH---HHHHHH--HHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T--TEEEEECSSSEEEE
T ss_pred EEEEECCCC---cccccc--ceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C--CEEEEEecCCEEEE
Confidence 988776531 000000 0000000 00122355678888877 3 49999999999999
Q ss_pred EeeC
Q 035748 300 FKEN 303 (655)
Q Consensus 300 Fren 303 (655)
|.-.
T Consensus 256 wd~~ 259 (366)
T 3k26_A 256 WKPG 259 (366)
T ss_dssp EEES
T ss_pred EeCC
Confidence 9964
No 62
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=97.22 E-value=0.075 Score=51.21 Aligned_cols=238 Identities=16% Similarity=0.177 Sum_probs=119.6
Q ss_pred CCccceeeeccCCCCCCcceeEEeecc------cceEEEEcc-CCceE---EEEecCCCCCeeEEEEeeeeecceeEEEe
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDD------KGRVFVFLR-NGDVS---VEFYTMSELPVTAMVSYVSVYKNESVLVT 230 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~------~Grv~Vfs~-~GDvl---~E~~T~~~spVTAm~SYlsvrRNeT~lVT 230 (655)
+..|+|+..=| || +|+|.|.. .|.|+++.. .|... +.........|++ +++. . +.. +++
T Consensus 42 ~~~V~~v~fSp----DG--~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~-~~~s-~--d~~-~l~ 110 (357)
T 4g56_B 42 EVQIGAVRYRR----DG--ALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTD-VAWV-S--EKG-ILV 110 (357)
T ss_dssp CSEEEEEEECS----SS--CEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEE-EEEE-T--TTE-EEE
T ss_pred cCCEEEEEECC----CC--CEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEE-EEEc-C--CCC-EEE
Confidence 45577777766 44 67887765 688999843 34321 2222234567888 4553 2 334 556
Q ss_pred eecCceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee-CCeEEEE
Q 035748 231 GHENGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE-NGMVHGT 309 (655)
Q Consensus 231 GHadG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre-nGtl~G~ 309 (655)
|..||+|.+-.+.. ++... ...+ ...+-..+|+.|.+.. ..++++++..+|.|+||.. .+.....
T Consensus 111 ~s~dg~v~lWd~~~---~~~~~------~~~~---~~~~h~~~V~~v~~sp--dg~~l~sgs~dg~v~iwd~~~~~~~~~ 176 (357)
T 4g56_B 111 ASDSGAVELWEILE---KESLL------VNKF---AKYEHDDIVKTLSVFS--DGTQAVSGGKDFSVKVWDLSQKAVLKS 176 (357)
T ss_dssp EETTSCEEEC-----------C------CCCE---EECCCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred EECCCEEEEeeccc---cceeE------EEee---ccCCCCCCEEEEEECC--CCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 77899986544332 21110 0112 1112345788887765 4468999999999999987 4777666
Q ss_pred EeccCCCc---eEEEe--e-eeeeeeecCcccc-ccccCcccccccCCCCcccceeeeccccccceeeeeccCCcEEEEE
Q 035748 310 AAMLSSKP---LVFLK--Q-RLLFLTECGAGSL-DLRTMKLRETECEGLNNSLVRNYVFDATERSKAYGYTSEGDLIHVL 382 (655)
Q Consensus 310 aa~~~Srp---laFlk--Q-rllfLTe~Gaasl-DLrtm~vr~~pCeGLN~S~i~syaFD~~~rsKaYG~T~~G~Li~v~ 382 (655)
+ ..-..+ ++|-. + .++.-++-|...+ |+++-+.....-.......+.+.+|.+.....+.--+.+|. |.+|
T Consensus 177 ~-~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~-i~~w 254 (357)
T 4g56_B 177 Y-NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGN-VSLV 254 (357)
T ss_dssp E-CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSC-EEEE
T ss_pred E-cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccc-eeEE
Confidence 6 433333 44433 2 2333333343332 67664433222222233456677776654333222233443 2333
Q ss_pred EecCccccceEEeeeccccCCccc-cee--eece-eEEEEec-ceEEEEEeece
Q 035748 383 LLGDVTNFKCRVRSKRKFDMSEPL-AFQ--AIKG-YLLVVCE-EKIFVYNVSAQ 431 (655)
Q Consensus 383 l~gD~~~~~CrVRs~~k~d~~~pv-alq--aIKG-YlLvas~-~~V~VyNvTsq 431 (655)
|....+|...-.. ...++ .++ --.+ ||..++. ..|.|||+.+.
T Consensus 255 ---d~~~~~~~~~~~~---~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~ 302 (357)
T 4g56_B 255 ---NIKNPDSAQTSAV---HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS 302 (357)
T ss_dssp ---ESSCGGGCEEECC---CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC
T ss_pred ---ECCCCcEeEEEec---cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC
Confidence 3333333322111 12222 222 1123 4555555 46999998763
No 63
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.21 E-value=0.021 Score=62.86 Aligned_cols=122 Identities=15% Similarity=0.185 Sum_probs=84.4
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILI 239 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~ 239 (655)
...|+|+..-|- .+|+|+|...|.|.|++.. |..+..+.. ...+|+++ ++ +...+..+++||..||.|.+
T Consensus 657 ~~~v~~~~~s~~------~~~l~s~~~d~~v~vwd~~~~~~~~~~~~-~~~~v~~~-~~-~~~~~~~~l~sg~~d~~v~v 727 (1249)
T 3sfz_A 657 EDEVLCCAFSSD------DSYIATCSADKKVKIWDSATGKLVHTYDE-HSEQVNCC-HF-TNKSNHLLLATGSNDFFLKL 727 (1249)
T ss_dssp SSCEEEEEECTT------SSEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEE-EE-CSSSSCCEEEEEETTSCEEE
T ss_pred CCCEEEEEEecC------CCEEEEEeCCCeEEEEECCCCceEEEEcC-CCCcEEEE-EE-ecCCCceEEEEEeCCCeEEE
Confidence 345666666652 3699999999999999765 887776654 47789884 43 35557889999999999976
Q ss_pred EEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee-CCeEEEE
Q 035748 240 HKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE-NGMVHGT 309 (655)
Q Consensus 240 hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre-nGtl~G~ 309 (655)
..+. .+. ....+ .+...+|+.+.++.-| ++++++..+|.|+||+- ++.....
T Consensus 728 wd~~---~~~--------~~~~~-----~~h~~~v~~~~~sp~~--~~l~s~s~dg~v~vwd~~~~~~~~~ 780 (1249)
T 3sfz_A 728 WDLN---QKE--------CRNTM-----FGHTNSVNHCRFSPDD--ELLASCSADGTLRLWDVRSANERKS 780 (1249)
T ss_dssp EETT---SSS--------EEEEE-----CCCSSCEEEEEECSST--TEEEEEESSSEEEEEEGGGTEEEEE
T ss_pred EECC---Ccc--------hhhee-----cCCCCCEEEEEEecCC--CEEEEEECCCeEEEEeCCCCcccce
Confidence 5442 111 11112 1234578888877644 58999999999999986 3544333
No 64
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=97.20 E-value=0.006 Score=56.46 Aligned_cols=140 Identities=17% Similarity=0.155 Sum_probs=90.8
Q ss_pred eeeeeeecCCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEee
Q 035748 153 QFVSAVKLESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTG 231 (655)
Q Consensus 153 ~fvSAvklda~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTG 231 (655)
+.+.-.+...+++++...|.... ..++++|...|.|++++.. |..+..+. ....+|+++ ++. . .+..+|+||
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~v~~~-~~~-~-~~~~ll~~~ 205 (408)
T 4a11_B 133 QTADVFNFEETVYSHHMSPVSTK---HCLVAVGTRGPKVQLCDLKSGSCSHILQ-GHRQEILAV-SWS-P-RYDYILATA 205 (408)
T ss_dssp EEEEEEECSSCEEEEEECSSCSS---CCEEEEEESSSSEEEEESSSSCCCEEEC-CCCSCEEEE-EEC-S-SCTTEEEEE
T ss_pred ccceeccCCCceeeeEeecCCCC---CcEEEEEcCCCeEEEEeCCCcceeeeec-CCCCcEEEE-EEC-C-CCCcEEEEE
Confidence 34444556788888888887532 3589999999999999766 77666554 447789984 432 3 244589999
Q ss_pred ecCceEEEEEEEecCCCCCcchhhhhhccc--cccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC
Q 035748 232 HENGVILIHKVYEKPNGEDWSSLVIENVGK--YVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN 303 (655)
Q Consensus 232 HadG~V~~hrV~Es~~gdD~~sLs~e~~r~--~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren 303 (655)
..||.|.+..+..... ....+...+... -..........+|+.+.++. ..+|++++..+|.|.||.-+
T Consensus 206 ~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~ 275 (408)
T 4a11_B 206 SADSRVKLWDVRRASG--CLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS--DGLHLLTVGTDNRMRLWNSS 275 (408)
T ss_dssp ETTSCEEEEETTCSSC--CSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT--TSSEEEEEETTSCEEEEETT
T ss_pred cCCCcEEEEECCCCCc--ccccccccccccceeeccccccccCceeEEEEcC--CCCEEEEecCCCeEEEEECC
Confidence 9999998876653110 000010000000 00011234556888887765 45689999999999999864
No 65
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=97.17 E-value=0.038 Score=53.29 Aligned_cols=125 Identities=12% Similarity=0.130 Sum_probs=81.8
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILI 239 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~ 239 (655)
...|+|+.+.|- .+++++|...|.|.+++.+ |..+..+.. -..+|+++.. +. .+++++++|..||.|.+
T Consensus 139 ~~~V~~v~~spd------g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-h~~~v~~v~~--s~-~~~~~~~s~~~dg~v~~ 208 (357)
T 4g56_B 139 DDIVKTLSVFSD------GTQAVSGGKDFSVKVWDLSQKAVLKSYNA-HSSEVNCVAA--CP-GKDTIFLSCGEDGRILL 208 (357)
T ss_dssp SSCEEEEEECSS------SSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEE--CT-TCSSCEEEEETTSCEEE
T ss_pred CCCEEEEEECCC------CCEEEEEeCCCeEEEEECCCCcEEEEEcC-CCCCEEEEEE--cc-CCCceeeeeccCCceEE
Confidence 456788887763 3789999999999999766 777776654 4678998543 22 35678999999999865
Q ss_pred EEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee-CCeEEEEE
Q 035748 240 HKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE-NGMVHGTA 310 (655)
Q Consensus 240 hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre-nGtl~G~a 310 (655)
..+. .+.- ...+ .......+|+.+..+ .-...++++++.+|.|++|.- ++...-+.
T Consensus 209 wd~~---~~~~--------~~~~---~~~~~~~~v~~v~~s-p~~~~~la~g~~d~~i~~wd~~~~~~~~~~ 265 (357)
T 4g56_B 209 WDTR---KPKP--------ATRI---DFCASDTIPTSVTWH-PEKDDTFACGDETGNVSLVNIKNPDSAQTS 265 (357)
T ss_dssp CCTT---SSSC--------BCBC---CCTTCCSCEEEEEEC-TTSTTEEEEEESSSCEEEEESSCGGGCEEE
T ss_pred EECC---CCce--------eeee---eeccccccccchhhh-hcccceEEEeecccceeEEECCCCcEeEEE
Confidence 4321 1111 0111 122234456766554 334467888999999999986 34444444
No 66
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.062 Score=49.20 Aligned_cols=122 Identities=11% Similarity=0.173 Sum_probs=82.1
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-Cce-EEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDV-SVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVIL 238 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDv-l~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~ 238 (655)
...|+|+...|..+ .+|+++|...|.|.+++.+ |.. .+........+|+++ ++. ...+..+|++|..||.|.
T Consensus 55 ~~~v~~~~~~~~~~----~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~~~~l~~~~~d~~i~ 128 (379)
T 3jrp_A 55 EGPVWRVDWAHPKF----GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSV-QWA-PHEYGPLLLVASSDGKVS 128 (379)
T ss_dssp SSCEEEEEECCGGG----CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEE-EEC-CGGGCSEEEEEETTSEEE
T ss_pred CCcEEEEEeCCCCC----CCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEE-EeC-CCCCCCEEEEecCCCcEE
Confidence 56788888876532 3699999999999999766 552 333334457889984 432 322278999999999998
Q ss_pred EEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecC-----------ceeEEEEeeCCCcEEEEee
Q 035748 239 IHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIG-----------RMRYILSADASGKIRVFKE 302 (655)
Q Consensus 239 ~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvG-----------r~RYVlsaDasGrV~VFre 302 (655)
+..+... .....+ .+ .....+|+.+.++... ...+++++..+|.|++|.-
T Consensus 129 v~d~~~~---~~~~~~------~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 189 (379)
T 3jrp_A 129 VVEFKEN---GTTSPI------II-----DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 189 (379)
T ss_dssp EEECCTT---SCCCEE------EE-----ECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEE
T ss_pred EEecCCC---CceeeE------Ee-----cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEe
Confidence 7766431 111111 11 1234567777766532 4678999999999999976
No 67
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.14 E-value=0.034 Score=50.98 Aligned_cols=122 Identities=18% Similarity=0.292 Sum_probs=83.2
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILI 239 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~ 239 (655)
...++|+..-|. .+++++|...|.|.+++.. |..+..+.. ...||+++ ++ ..+..+|++|..||.|.+
T Consensus 107 ~~~v~~~~~~~~------~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~-~~---~~~~~~l~~~~~d~~i~~ 175 (312)
T 4ery_A 107 SNYVFCCNFNPQ------SNLIVSGSFDESVRIWDVKTGKCLKTLPA-HSDPVSAV-HF---NRDGSLIVSSSYDGLCRI 175 (312)
T ss_dssp SSCEEEEEECSS------SSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEE-EE---CTTSSEEEEEETTSCEEE
T ss_pred CCCEEEEEEcCC------CCEEEEEeCCCcEEEEECCCCEEEEEecC-CCCcEEEE-EE---cCCCCEEEEEeCCCcEEE
Confidence 445677777663 3689999999999999765 776665543 46788884 33 247789999999999876
Q ss_pred EEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee-CCeEEEEE
Q 035748 240 HKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE-NGMVHGTA 310 (655)
Q Consensus 240 hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre-nGtl~G~a 310 (655)
..+.. +. ....+ ......+|+.+.+..- .+|++++..+|.|++|.- ++......
T Consensus 176 wd~~~---~~--------~~~~~----~~~~~~~~~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~ 230 (312)
T 4ery_A 176 WDTAS---GQ--------CLKTL----IDDDNPPVSFVKFSPN--GKYILAATLDNTLKLWDYSKGKCLKTY 230 (312)
T ss_dssp EETTT---CC--------EEEEE----CCSSCCCEEEEEECTT--SSEEEEEETTTEEEEEETTTTEEEEEE
T ss_pred EECCC---Cc--------eeeEE----eccCCCceEEEEECCC--CCEEEEEcCCCeEEEEECCCCcEEEEE
Confidence 55421 11 01111 2234557777666543 368999999999999987 46655554
No 68
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=97.08 E-value=0.0051 Score=60.72 Aligned_cols=117 Identities=20% Similarity=0.288 Sum_probs=84.4
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeec--------ceeEEEee
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYK--------NESVLVTG 231 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrR--------NeT~lVTG 231 (655)
...++|+.+-|- .+|+|+|+..|.|++++.+ |..+..+...-..+|+++ ++. ... +..+|+||
T Consensus 488 ~~~v~~~~~s~~------g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~-~~s-p~~~~~~~~~~~~~~l~~~ 559 (615)
T 1pgu_A 488 RAKPSYISISPS------ETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAI-SWK-PAEKGANEEEIEEDLVATG 559 (615)
T ss_dssp SSCEEEEEECTT------SSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEE-EEC-CCC------CCSCCEEEEE
T ss_pred cCceEEEEECCC------CCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEE-EEc-CccccccccccCCCEEEEE
Confidence 456777777653 3699999999999999775 888777665467899994 443 211 78899999
Q ss_pred ecCceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC
Q 035748 232 HENGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN 303 (655)
Q Consensus 232 HadG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren 303 (655)
..||.|.+..+.. +.. ..+.+ .+...+|+.|.+..-|+ ++++..+|.|+||+-+
T Consensus 560 ~~dg~i~iw~~~~---~~~-------~~~~~-----~~h~~~v~~l~~s~~~~---l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 560 SLDTNIFIYSVKR---PMK-------IIKAL-----NAHKDGVNNLLWETPST---LVSSGADACIKRWNVV 613 (615)
T ss_dssp ETTSCEEEEESSC---TTC-------CEEET-----TSSTTCEEEEEEEETTE---EEEEETTSCEEEEEEC
T ss_pred cCCCcEEEEECCC---Cce-------echhh-----hcCccceEEEEEcCCCC---eEEecCCceEEEEeee
Confidence 9999998766532 111 11122 12346899998887765 9999999999999753
No 69
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=97.05 E-value=0.13 Score=53.66 Aligned_cols=177 Identities=15% Similarity=0.099 Sum_probs=104.3
Q ss_pred CccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEE
Q 035748 162 SDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIH 240 (655)
Q Consensus 162 a~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~h 240 (655)
..|+|+.+-|- .++++.|...|.|.+++.. |..+..+. +-..+|+++ ++. .+...|+||..||.|.+.
T Consensus 431 ~~v~~v~~s~~------g~~l~sgs~Dg~v~vwd~~~~~~~~~~~-~h~~~v~~~-~~s---~~~~~l~s~s~D~~i~iw 499 (694)
T 3dm0_A 431 HFVEDVVLSSD------GQFALSGSWDGELRLWDLAAGVSTRRFV-GHTKDVLSV-AFS---LDNRQIVSASRDRTIKLW 499 (694)
T ss_dssp SCEEEEEECTT------SSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEE-EEC---TTSSCEEEEETTSCEEEE
T ss_pred CcEEEEEECCC------CCEEEEEeCCCcEEEEECCCCcceeEEe-CCCCCEEEE-EEe---CCCCEEEEEeCCCEEEEE
Confidence 34566665552 3799999999999999765 66555544 446789884 432 477889999999999765
Q ss_pred EEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee-CCeEEEEEeccCCCc--
Q 035748 241 KVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE-NGMVHGTAAMLSSKP-- 317 (655)
Q Consensus 241 rV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre-nGtl~G~aa~~~Srp-- 317 (655)
.+. ++. ...+ .....+....|+.+.++.-+...+++++..+|.|+||.- ++.+..+. ..-..+
T Consensus 500 d~~----~~~--------~~~~-~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~-~~h~~~v~ 565 (694)
T 3dm0_A 500 NTL----GEC--------KYTI-SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL-AGHTGYVS 565 (694)
T ss_dssp CTT----SCE--------EEEE-CSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEE
T ss_pred ECC----CCc--------ceee-ccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEE-cCCCCCEE
Confidence 421 110 0000 001122344688877776666679999999999999986 45555555 333333
Q ss_pred -eEEEeeeeeeee--ecCcccc-ccccCcccccccCCCCcccceeeecccccc
Q 035748 318 -LVFLKQRLLFLT--ECGAGSL-DLRTMKLRETECEGLNNSLVRNYVFDATER 366 (655)
Q Consensus 318 -laFlkQrllfLT--e~Gaasl-DLrtm~vr~~pCeGLN~S~i~syaFD~~~r 366 (655)
++|-...-+++| .-|.-.+ |+++.+.... ++ .++.+.+.+|.+...
T Consensus 566 ~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~-~~--~~~~v~~~~~sp~~~ 615 (694)
T 3dm0_A 566 TVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS-LE--ANSVIHALCFSPNRY 615 (694)
T ss_dssp EEEECTTSSEEEEEETTSBCEEEETTTTEEEEC-CB--CSSCEEEEEECSSSS
T ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE-ec--CCCcEEEEEEcCCCc
Confidence 344333222223 2332222 6666442211 11 245677777776543
No 70
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=97.05 E-value=0.056 Score=52.93 Aligned_cols=237 Identities=12% Similarity=0.128 Sum_probs=125.6
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccCCceEEEEecC--CCCCeeEEEEeeeeecceeEEEeeecCceEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRNGDVSVEFYTM--SELPVTAMVSYVSVYKNESVLVTGHENGVIL 238 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~GDvl~E~~T~--~~spVTAm~SYlsvrRNeT~lVTGHadG~V~ 238 (655)
...|+||..-|.. ..+++.|...|.|.+.+-.+..+..+... ...+|+++ + ...+..+|++|..||.|.
T Consensus 164 ~~~V~~l~f~p~~-----~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~l~~g~~dg~i~ 234 (435)
T 4e54_B 164 GGSITGLKFNPLN-----TNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSL-D---VSASSRMVVTGDNVGNVI 234 (435)
T ss_dssp SCCCCEEEECSSC-----TTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCE-E---EETTTTEEEEECSSSBEE
T ss_pred CCCEEEEEEeCCC-----CCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEE-E---ECCCCCEEEEEeCCCcEe
Confidence 4567777776643 35899999999999998887765555433 23455553 3 335788999999999997
Q ss_pred EEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC-C----eEEEEEecc
Q 035748 239 IHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN-G----MVHGTAAML 313 (655)
Q Consensus 239 ~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren-G----tl~G~aa~~ 313 (655)
+..+. +.. +..+. +-..+|+.+.++.-+ ..+++++..+|.|+||.-. + .+.... .
T Consensus 235 ~wd~~----~~~--------~~~~~-----~h~~~v~~v~~~p~~-~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~--~ 294 (435)
T 4e54_B 235 LLNMD----GKE--------LWNLR-----MHKKKVTHVALNPCC-DWFLATASVDQTVKIWDLRQVRGKASFLYSL--P 294 (435)
T ss_dssp EEESS----SCB--------CCCSB-----CCSSCEEEEEECTTC-SSEEEEEETTSBCCEEETTTCCSSSCCSBCC--B
T ss_pred eeccC----cce--------eEEEe-----cccceEEeeeecCCC-ceEEEEecCcceeeEEecccccccceEEEee--e
Confidence 76541 111 12221 223478888766444 3477888999999999642 1 111110 1
Q ss_pred CCCce---EEEe--eeeeeeeecCcccc-ccccCc----ccccccCCCCcccceeeeccccccceeeeeccCCcE-----
Q 035748 314 SSKPL---VFLK--QRLLFLTECGAGSL-DLRTMK----LRETECEGLNNSLVRNYVFDATERSKAYGYTSEGDL----- 378 (655)
Q Consensus 314 ~Srpl---aFlk--QrllfLTe~Gaasl-DLrtm~----vr~~pCeGLN~S~i~syaFD~~~rsKaYG~T~~G~L----- 378 (655)
-..+| +|-. +.|+.-+.-|.-.+ |+++.. ...+++....+.......|.+....-+.|+..+|.+
T Consensus 295 h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 374 (435)
T 4e54_B 295 HRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTP 374 (435)
T ss_dssp CSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSST
T ss_pred ccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEe
Confidence 12222 2222 23332222232222 555432 222333344444555666777666666666655543
Q ss_pred -----EEEEEecCccccceEEeeeccccCCcccceeee--ce-eEEEEecceEEEEEeec
Q 035748 379 -----IHVLLLGDVTNFKCRVRSKRKFDMSEPLAFQAI--KG-YLLVVCEEKIFVYNVSA 430 (655)
Q Consensus 379 -----i~v~l~gD~~~~~CrVRs~~k~d~~~pvalqaI--KG-YlLvas~~~V~VyNvTs 430 (655)
|.+| |...-+|.... .........++.+. .| ||..++.+.|.|||...
T Consensus 375 ~~~~~i~iw---d~~~g~~~~~l-~~~~~~~v~s~~~fspdg~~lasg~d~~i~iW~~~~ 430 (435)
T 4e54_B 375 YELRTIDVF---DGNSGKMMCQL-YDPESSGISSLNEFNPMGDTLASAMGYHILIWSQQE 430 (435)
T ss_dssp TCCCCEEEE---CSSSCCEEEEE-CCSSCCCCCCEEEECTTSSCEEEECSSEEEECCCC-
T ss_pred cCCCEEEEE---ECCCCcEEEEE-eCCCCCcEEEEEEECCCCCEEEEEcCCcEEEEECCc
Confidence 3333 22221221111 00011223333322 34 44445567899999876
No 71
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=97.04 E-value=0.2 Score=48.13 Aligned_cols=139 Identities=14% Similarity=0.120 Sum_probs=81.6
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILI 239 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~ 239 (655)
...|+|+..-|. | +++|.|...|.|.|++.. |.....+.. ...+|+++ +|. .+.+.|++|..||.|.+
T Consensus 64 ~~~V~~~~~s~d----~--~~l~s~s~Dg~v~vWd~~~~~~~~~~~~-~~~~v~~~-~~s---p~g~~lasg~~d~~i~v 132 (354)
T 2pbi_B 64 GNKVLCMDWCKD----K--RRIVSSSQDGKVIVWDSFTTNKEHAVTM-PCTWVMAC-AYA---PSGCAIACGGLDNKCSV 132 (354)
T ss_dssp SSCEEEEEECTT----S--SEEEEEETTSEEEEEETTTCCEEEEEEC-SSSCCCEE-EEC---TTSSEEEEESTTSEEEE
T ss_pred CCeEEEEEECCC----C--CEEEEEeCCCeEEEEECCCCCcceEEec-CCCCEEEE-EEC---CCCCEEEEeeCCCCEEE
Confidence 556888888763 2 689999999999999654 665554443 35567773 432 46778888888888877
Q ss_pred EEEEecC-------------CCCCcchhhhhhcc-cc-ccc----------cC-------CCCCCceEEEEEeecCceeE
Q 035748 240 HKVYEKP-------------NGEDWSSLVIENVG-KY-VAT----------EN-------GEEGLSVTLLEVHHIGRMRY 287 (655)
Q Consensus 240 hrV~Es~-------------~gdD~~sLs~e~~r-~~-~~~----------e~-------~~d~~pVt~LE~hrvGr~RY 287 (655)
..+.... |......++..... .+ ..+ +. .+...+|+.+.+..-....+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 133 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp EECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 6553211 11100001100000 00 000 00 01233555555544444579
Q ss_pred EEEeeCCCcEEEEee-CCeEEEEE
Q 035748 288 ILSADASGKIRVFKE-NGMVHGTA 310 (655)
Q Consensus 288 VlsaDasGrV~VFre-nGtl~G~a 310 (655)
++++..+|.|++|.- .|....++
T Consensus 213 l~sgs~Dg~v~~wd~~~~~~~~~~ 236 (354)
T 2pbi_B 213 FVSGGCDKKAMVWDMRSGQCVQAF 236 (354)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEE
T ss_pred EEEEeCCCeEEEEECCCCcEEEEe
Confidence 999999999999986 46665555
No 72
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=97.02 E-value=0.02 Score=50.90 Aligned_cols=133 Identities=18% Similarity=0.219 Sum_probs=79.4
Q ss_pred CccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceE-EEEecCCCCCeeEEEEeeeeecce----eEEEeeecCc
Q 035748 162 SDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVS-VEFYTMSELPVTAMVSYVSVYKNE----SVLVTGHENG 235 (655)
Q Consensus 162 a~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl-~E~~T~~~spVTAm~SYlsvrRNe----T~lVTGHadG 235 (655)
..++|+..-|..- -..++++|...|.+.+.... +... +.....-..+|++|. +. . +. .+|+||..||
T Consensus 168 ~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~-~~-p--~~~~~~~~l~s~~~dg 240 (351)
T 3f3f_A 168 QSDFCLSWCPSRF---SPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSIS-WA-P--SIGRWYQLIATGCKDG 240 (351)
T ss_dssp CCCEEEEECCCSS---SCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEE-EC-C--CSSCSSEEEEEEETTS
T ss_pred cceeEEEeccCCC---CCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEE-EC-C--CCCCcceEEEEEcCCC
Confidence 3455666555421 14689999999998777555 5542 222234578999854 32 3 43 8999999999
Q ss_pred eEEEEEEEecCCCCCc-----ch--------hhhh----------------hccccc-cccCCCCCCceEEEEEeecCce
Q 035748 236 VILIHKVYEKPNGEDW-----SS--------LVIE----------------NVGKYV-ATENGEEGLSVTLLEVHHIGRM 285 (655)
Q Consensus 236 ~V~~hrV~Es~~gdD~-----~s--------Ls~e----------------~~r~~~-~~e~~~d~~pVt~LE~hrvGr~ 285 (655)
.|.+..+......... .. .... ...... -..-.+...+|+.+.++.-|
T Consensus 241 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-- 318 (351)
T 3f3f_A 241 RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTG-- 318 (351)
T ss_dssp CEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSS--
T ss_pred eEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCC--
Confidence 9999999862100000 00 0000 000000 00012344579998877644
Q ss_pred eEEEEeeCCCcEEEEeeC
Q 035748 286 RYILSADASGKIRVFKEN 303 (655)
Q Consensus 286 RYVlsaDasGrV~VFren 303 (655)
++++++..+|.|+||+-+
T Consensus 319 ~~l~s~~~dg~v~iw~~~ 336 (351)
T 3f3f_A 319 TILSSAGDDGKVRLWKAT 336 (351)
T ss_dssp CCEEEEETTSCEEEEEEC
T ss_pred CEEEEecCCCcEEEEecC
Confidence 699999999999999875
No 73
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=96.92 E-value=0.025 Score=55.83 Aligned_cols=129 Identities=15% Similarity=0.156 Sum_probs=87.5
Q ss_pred eeeeecCCccceeeeccCCCCCCcceeEEeecc-cceEEEEccCCceEE-EEecCCCCCeeEEEEeeeeecceeEEEeee
Q 035748 155 VSAVKLESDPTCINILPFRDYEGHSKYVAVGDD-KGRVFVFLRNGDVSV-EFYTMSELPVTAMVSYVSVYKNESVLVTGH 232 (655)
Q Consensus 155 vSAvklda~aTal~vLP~r~~~glskY~AVGD~-~Grv~Vfs~~GDvl~-E~~T~~~spVTAm~SYlsvrRNeT~lVTGH 232 (655)
+...+...+++|+.+- .+++++|.. .|.|++++..+..+. ........+|++| ++ ..+..+|++|.
T Consensus 440 ~~~~~~~~~~~~~~~~--------~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~-~~---s~~g~~l~~~~ 507 (615)
T 1pgu_A 440 IKSVRLNSPGSAVSLS--------QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYI-SI---SPSETYIAAGD 507 (615)
T ss_dssp EEEEECSSCEEEEEEC--------SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEE-EE---CTTSSEEEEEE
T ss_pred eeecccCCCceEEEEc--------CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEE-EE---CCCCCEEEEcC
Confidence 3334456667776654 579999999 999999988854443 3334457889984 33 35788999999
Q ss_pred cCceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecC--------ceeEEEEeeCCCcEEEEeeC-
Q 035748 233 ENGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIG--------RMRYILSADASGKIRVFKEN- 303 (655)
Q Consensus 233 adG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvG--------r~RYVlsaDasGrV~VFren- 303 (655)
.||.|.+..+.. ++- .+.+ .+....+|+.+.+.... ..++++++..+|.|+||.-.
T Consensus 508 ~dg~i~iw~~~~---~~~--------~~~~----~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 572 (615)
T 1pgu_A 508 VMGKILLYDLQS---REV--------KTSR----WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR 572 (615)
T ss_dssp TTSCEEEEETTT---TEE--------EECC----SCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSC
T ss_pred CCCeEEEeeCCC---Ccc--------eeEe----ecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCC
Confidence 999997765421 111 1222 11135678888776522 56799999999999999874
Q ss_pred C-eEEEEE
Q 035748 304 G-MVHGTA 310 (655)
Q Consensus 304 G-tl~G~a 310 (655)
+ ......
T Consensus 573 ~~~~~~~~ 580 (615)
T 1pgu_A 573 PMKIIKAL 580 (615)
T ss_dssp TTCCEEET
T ss_pred Cceechhh
Confidence 3 555555
No 74
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=96.91 E-value=0.29 Score=46.17 Aligned_cols=119 Identities=9% Similarity=0.109 Sum_probs=74.4
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-Cc--eEEEEecC-CCCCeeEEEEeeeeecceeEEEeeecCce
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GD--VSVEFYTM-SELPVTAMVSYVSVYKNESVLVTGHENGV 236 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GD--vl~E~~T~-~~spVTAm~SYlsvrRNeT~lVTGHadG~ 236 (655)
..+|+|+..-|. ++|+|...|.|.+++.. ++ .+..+... -..+|++ +++- .+..+|+||..||.
T Consensus 14 ~~~v~~~~~s~~--------~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~-v~~s---p~~~~las~s~D~~ 81 (330)
T 2hes_X 14 KEKIWSFDFSQG--------ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRS-VAWR---PHTSLLAAGSFDST 81 (330)
T ss_dssp SSCEEEEEEETT--------EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEE-EEEC---TTSSEEEEEETTSC
T ss_pred CCceeeeccCCC--------EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEE-EEEC---CCCCEEEEEeCCCc
Confidence 456777765442 89999999999999766 32 33333233 5678998 4442 36789999999999
Q ss_pred EEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee
Q 035748 237 ILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE 302 (655)
Q Consensus 237 V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre 302 (655)
|.+-.+.+..... ...+..+.+ .+-..+|+.+.++.- .+|++++..+|.|++|.-
T Consensus 82 v~iw~~~~~~~~~----~~~~~~~~~-----~~h~~~V~~v~~sp~--g~~las~s~D~~v~iwd~ 136 (330)
T 2hes_X 82 VSIWAKEESADRT----FEMDLLAII-----EGHENEVKGVAWSND--GYYLATCSRDKSVWIWET 136 (330)
T ss_dssp EEEEEC-----------CCCEEEEEE-----C----CEEEEEECTT--SCEEEEEETTSCEEEEEC
T ss_pred EEEEEcccCcCcc----ccceeEEEE-----cCCCCcEEEEEECCC--CCEEEEEeCCCEEEEEec
Confidence 9776554311100 001111222 122346888877654 469999999999999986
No 75
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=96.89 E-value=0.25 Score=44.98 Aligned_cols=207 Identities=15% Similarity=0.152 Sum_probs=114.5
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-Cc-eEEEEecCCCCCeeEEEEee--eeecceeEEEeeecCce
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GD-VSVEFYTMSELPVTAMVSYV--SVYKNESVLVTGHENGV 236 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GD-vl~E~~T~~~spVTAm~SYl--svrRNeT~lVTGHadG~ 236 (655)
..+|+|+...|... -.+++++|...|.|.+++.+ +. .+..+ ..-..+|+++...- ....+...|+||..||.
T Consensus 65 ~~~v~~~~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~ 140 (357)
T 3i2n_A 65 AKPIKCGTFGATSL---QQRYLATGDFGGNLHIWNLEAPEMPVYSV-KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGT 140 (357)
T ss_dssp SSCEEEEECTTCCT---TTCCEEEEETTSCEEEECTTSCSSCSEEE-CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSC
T ss_pred cCcEEEEEEcCCCC---CCceEEEecCCCeEEEEeCCCCCccEEEE-EecccceEEEeeccccccCCCccEEEEEeCCCe
Confidence 66888888887521 14789999999999999766 55 44444 45578899964321 23457789999999999
Q ss_pred EEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEee--cCceeEEEEeeCCCcEEEEeeC-CeEEEEEe-c
Q 035748 237 ILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHH--IGRMRYILSADASGKIRVFKEN-GMVHGTAA-M 312 (655)
Q Consensus 237 V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hr--vGr~RYVlsaDasGrV~VFren-Gtl~G~aa-~ 312 (655)
|.+..+.. +.. ....+. ...+....+|..+.+.- -...++++++..+|.|.+|.-. +...-... .
T Consensus 141 i~vwd~~~---~~~-------~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 209 (357)
T 3i2n_A 141 VKVWDPRQ---KDD-------PVANME-PVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIK 209 (357)
T ss_dssp EEEECTTS---CSS-------CSEEEC-CCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred EEEEeCCC---CCC-------cceecc-ccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCC
Confidence 97654432 111 111121 11223345677665321 1355799999999999999874 44322220 1
Q ss_pred cCCCceEEEe---e--eeeeeeecCcc-ccccccCccccc-ccC--CCCcccceeeeccccccceeeeeccCCcEEEEEE
Q 035748 313 LSSKPLVFLK---Q--RLLFLTECGAG-SLDLRTMKLRET-ECE--GLNNSLVRNYVFDATERSKAYGYTSEGDLIHVLL 383 (655)
Q Consensus 313 ~~SrplaFlk---Q--rllfLTe~Gaa-slDLrtm~vr~~-pCe--GLN~S~i~syaFD~~~rsKaYG~T~~G~Li~v~l 383 (655)
....-++|-. . .++.-+..|.- ..|+++.+.... ++. .-....+...+|.+..+..+..-..+|. |.+|=
T Consensus 210 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~iwd 288 (357)
T 3i2n_A 210 NGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGG-LHLWK 288 (357)
T ss_dssp SCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE-EEEEE
T ss_pred CceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCc-EEEee
Confidence 1122344443 2 23333333322 226655332211 110 0123457777888776644555555664 44443
No 76
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=96.86 E-value=0.24 Score=48.08 Aligned_cols=228 Identities=14% Similarity=0.143 Sum_probs=123.2
Q ss_pred CccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEE
Q 035748 162 SDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIH 240 (655)
Q Consensus 162 a~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~h 240 (655)
..|+|+..-|- .+|+|+|...|.|.+.+.. |..+..+ .+-..+|+++ + -|..+|++|..||.|.++
T Consensus 148 ~~V~sv~fspd------g~~lasgs~Dg~v~iWd~~~~~~~~~~-~~h~~~v~~~-s-----~~~~~l~sgs~d~~i~~~ 214 (420)
T 4gga_A 148 EYISSVAWIKE------GNYLAVGTSSAEVQLWDVQQQKRLRNM-TSHSARVGSL-S-----WNSYILSSGSRSGHIHHH 214 (420)
T ss_dssp CCEEEEEECTT------SSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEE-E-----EETTEEEEEETTSEEEEE
T ss_pred CcEEEEEECCC------CCEEEEEECCCeEEEEEcCCCcEEEEE-eCCCCceEEE-e-----eCCCEEEEEeCCCceeEe
Confidence 35888888772 3699999999999999766 7665554 4456778763 3 267899999999999876
Q ss_pred EEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC-Ce-----EEEEE-ecc
Q 035748 241 KVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN-GM-----VHGTA-AML 313 (655)
Q Consensus 241 rV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren-Gt-----l~G~a-a~~ 313 (655)
.+... .. .+..+ .+....|..+.... ..++++++..+|.|.||... +. +.... ...
T Consensus 215 d~~~~---~~-------~~~~~-----~~h~~~~~~~~~~~--~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~ 277 (420)
T 4gga_A 215 DVRVA---EH-------HVATL-----SGHSQEVCGLRWAP--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 277 (420)
T ss_dssp ETTSS---SC-------EEEEE-----ECCSSCEEEEEECT--TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSS
T ss_pred eeccc---ce-------eeEEe-----cccccceeeeeecC--CCCeeeeeeccccceEEeeccccccceeeeeecccCC
Confidence 53320 00 11112 11223455554443 34689999999999999763 21 11111 011
Q ss_pred CCCceEEEe-e-eeeeeeecCc--cc---cccccCcccccccCCCCcccceeeeccccccceeeeec-cCCcEEEEEEec
Q 035748 314 SSKPLVFLK-Q-RLLFLTECGA--GS---LDLRTMKLRETECEGLNNSLVRNYVFDATERSKAYGYT-SEGDLIHVLLLG 385 (655)
Q Consensus 314 ~SrplaFlk-Q-rllfLTe~Ga--as---lDLrtm~vr~~pCeGLN~S~i~syaFD~~~rsKaYG~T-~~G~Li~v~l~g 385 (655)
....++|.. + .++.+ ..|- +. -|+++.+....-. .+..+.+..|.+...--+.+.. .+|. |++|
T Consensus 278 ~V~~~~~~p~~~~~la~-~~gs~D~~I~iwd~~t~~~~~~~~---~~~~v~~~~~~~~~~~lv~~sg~~d~~-I~iw--- 349 (420)
T 4gga_A 278 AVKAVAWCPWQSNVLAT-GGGTSDRHIRIWNVCSGACLSAVD---AHSQVCSILWSPHYKELISGHGFAQNQ-LVIW--- 349 (420)
T ss_dssp CEEEEEECTTCTTEEEE-EECTTTCEEEEEETTTTEEEEEEE---CSSCEEEEEEETTTTEEEEEECTTTCC-EEEE---
T ss_pred ceeeeeeCCCcccEEEE-EeecCCCEEEEEeCCccccceeec---cccceeeeeecCCCCeEEEEEecCCCE-EEEE---
Confidence 122333332 2 23332 1111 11 1455443322222 3456777777776665555443 3443 3444
Q ss_pred CccccceEEeeeccccCCccc-ceeee-ce-eEEEEecc-eEEEEEeec
Q 035748 386 DVTNFKCRVRSKRKFDMSEPL-AFQAI-KG-YLLVVCEE-KIFVYNVSA 430 (655)
Q Consensus 386 D~~~~~CrVRs~~k~d~~~pv-alqaI-KG-YlLvas~~-~V~VyNvTs 430 (655)
|....+|...-.. ++.+| +++-- .| ||+-++.| .|.+||+..
T Consensus 350 d~~~~~~v~~l~g---H~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 350 KYPTMAKVAELKG---HTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp ETTTCCEEEEECC---CSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred ECCCCcEEEEEcC---CCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 3334444332222 22222 22211 24 55556654 599999875
No 77
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.21 Score=55.58 Aligned_cols=112 Identities=16% Similarity=0.235 Sum_probs=67.4
Q ss_pred eEEeecccceEEEEc-cCCceEEEE----e--cCCCCCeeEEEEe------------------------------eeeec
Q 035748 181 YVAVGDDKGRVFVFL-RNGDVSVEF----Y--TMSELPVTAMVSY------------------------------VSVYK 223 (655)
Q Consensus 181 Y~AVGD~~Grv~Vfs-~~GDvl~E~----~--T~~~spVTAm~SY------------------------------lsvrR 223 (655)
+++++-+.|.|.+++ ++|...... . .....+||++... +....
T Consensus 366 ~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~sp 445 (902)
T 2oaj_A 366 LILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAE 445 (902)
T ss_dssp EEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCS
T ss_pred eEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccc
Confidence 566666778888886 457544321 0 1223677775431 00123
Q ss_pred ceeEEEeeecCceEEEEEEEecCCCCCcchhhhhhccccc----cccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEE
Q 035748 224 NESVLVTGHENGVILIHKVYEKPNGEDWSSLVIENVGKYV----ATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRV 299 (655)
Q Consensus 224 NeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~~r~~~----~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~V 299 (655)
+..+|+|||.||+| |+|.-..+. . .....|. .....+....|+.+-+..=| ++++++..+|.|+|
T Consensus 446 dg~~laSgs~DgtV---rlWd~~~g~-~-----~~~~~~~~~l~~~~~~~h~~~V~svafspdg--~~LAsgs~DgtV~l 514 (902)
T 2oaj_A 446 YGTAFITGHSNGSV---RIYDASHGD-I-----QDNASFEVNLSRTLNKAKELAVDKISFAAET--LELAVSIETGDVVL 514 (902)
T ss_dssp EEEEEEEEETTSEE---EEEESSCCT-T-----TTTBCEEEEHHHHTTCSSSCCEEEEEEETTT--TEEEEEETTSCEEE
T ss_pred cCcEEEEecCCCcE---EEEECCCcc-c-----cCCceEEeechhhcCCCCCCceeEEEecCCC--CeEEEEecCcEEEE
Confidence 67899999999998 556533332 1 1111110 00122455689998777544 58999999999999
Q ss_pred EeeC
Q 035748 300 FKEN 303 (655)
Q Consensus 300 Fren 303 (655)
|+-+
T Consensus 515 wd~~ 518 (902)
T 2oaj_A 515 FKYE 518 (902)
T ss_dssp EEEE
T ss_pred EEec
Confidence 9975
No 78
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=96.82 E-value=0.26 Score=44.21 Aligned_cols=111 Identities=20% Similarity=0.212 Sum_probs=72.2
Q ss_pred CccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEE
Q 035748 162 SDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIH 240 (655)
Q Consensus 162 a~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~h 240 (655)
..|+|+...|. .+|+|+|...|.|.+.+.+ |..+..+. +-..++.++ + .+..+|++|..+|.+...
T Consensus 68 ~~V~~v~~~~~------~~~l~sgs~Dg~v~iw~~~~~~~~~~~~-~h~~~~~~~-~-----~~~~~l~s~~~~~~~~~~ 134 (318)
T 4ggc_A 68 EYISSVAWIKE------GNYLAVGTSSAEVQLWDVQQQKRLRNMT-SHSARVGSL-S-----WNSYILSSGSRSGHIHHH 134 (318)
T ss_dssp CCEEEEEECTT------SSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEE-E-----EETTEEEEEETTSEEEEE
T ss_pred CeEEEEEECCC------CCEEEEEECCCcEEEeecCCceeEEEec-CccceEEEe-e-----cCCCEEEEEecCCceEee
Confidence 34778777774 3799999999999999766 77665554 345566552 2 245689999999988654
Q ss_pred EEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee
Q 035748 241 KVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE 302 (655)
Q Consensus 241 rV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre 302 (655)
... .+.. ....+ ......+..+.+..-| ++++++..+|.|+||.-
T Consensus 135 ~~~---~~~~-------~~~~~-----~~~~~~~~~~~~~~~~--~~l~s~~~d~~i~iwd~ 179 (318)
T 4ggc_A 135 DVR---VAEH-------HVATL-----SGHSQEVCGLRWAPDG--RHLASGGNDNLVNVWPS 179 (318)
T ss_dssp ETT---SSSC-------EEEEE-----ECCSSCEEEEEECTTS--SEEEEEETTSCEEEEES
T ss_pred ecC---CCce-------eEEEE-----cCccCceEEEEEcCCC--CEEEEEecCcceeEEEC
Confidence 321 1111 01111 1223345555555444 58999999999999975
No 79
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=96.75 E-value=0.096 Score=49.72 Aligned_cols=109 Identities=20% Similarity=0.356 Sum_probs=76.6
Q ss_pred ceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEecCCCCCcchhhhh
Q 035748 179 SKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWSSLVIE 257 (655)
Q Consensus 179 skY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e 257 (655)
.+|+|+|...|.|.+++.. |.....+... ..+|++| ++ ..+..+|++|..||.|.+..+. .+.
T Consensus 134 g~~l~~g~~dg~v~i~~~~~~~~~~~~~~~-~~~v~~~-~~---spdg~~lasg~~dg~i~iwd~~---~~~-------- 197 (321)
T 3ow8_A 134 SQYLATGTHVGKVNIFGVESGKKEYSLDTR-GKFILSI-AY---SPDGKYLASGAIDGIINIFDIA---TGK-------- 197 (321)
T ss_dssp SSEEEEECTTSEEEEEETTTCSEEEEEECS-SSCEEEE-EE---CTTSSEEEEEETTSCEEEEETT---TTE--------
T ss_pred CCEEEEEcCCCcEEEEEcCCCceeEEecCC-CceEEEE-EE---CCCCCEEEEEcCCCeEEEEECC---CCc--------
Confidence 3699999999999999765 7777666654 5678873 43 2578899999999998655431 111
Q ss_pred hccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee-CCeEEEEE
Q 035748 258 NVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE-NGMVHGTA 310 (655)
Q Consensus 258 ~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre-nGtl~G~a 310 (655)
.++.+ .+...+|+.+.+..- .++++++..+|.|+||.- ++.+..+.
T Consensus 198 ~~~~~-----~~h~~~v~~l~~spd--~~~l~s~s~dg~i~iwd~~~~~~~~~~ 244 (321)
T 3ow8_A 198 LLHTL-----EGHAMPIRSLTFSPD--SQLLVTASDDGYIKIYDVQHANLAGTL 244 (321)
T ss_dssp EEEEE-----CCCSSCCCEEEECTT--SCEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred EEEEE-----cccCCceeEEEEcCC--CCEEEEEcCCCeEEEEECCCcceeEEE
Confidence 11222 123356777777653 458999999999999986 46666666
No 80
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=96.72 E-value=0.23 Score=48.72 Aligned_cols=120 Identities=14% Similarity=0.100 Sum_probs=78.0
Q ss_pred CccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEE
Q 035748 162 SDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIH 240 (655)
Q Consensus 162 a~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~h 240 (655)
..|+|+..-|. .+++|+|...|.|.+++.+ +..+..+ .+-..+|++ +++. .+...|+||..||.|.+.
T Consensus 151 ~~V~~v~~~~~------~~~l~sgs~D~~i~iwd~~~~~~~~~~-~~h~~~V~~-v~~~---p~~~~l~s~s~D~~i~~w 219 (410)
T 1vyh_C 151 DSVQDISFDHS------GKLLASCSADMTIKLWDFQGFECIRTM-HGHDHNVSS-VSIM---PNGDHIVSASRDKTIKMW 219 (410)
T ss_dssp SCEEEEEECTT------SSEEEEEETTSCCCEEETTSSCEEECC-CCCSSCEEE-EEEC---SSSSEEEEEETTSEEEEE
T ss_pred CcEEEEEEcCC------CCEEEEEeCCCeEEEEeCCCCceeEEE-cCCCCCEEE-EEEe---CCCCEEEEEeCCCeEEEE
Confidence 45666666552 3699999999999999776 5554444 444678988 4433 477899999999999765
Q ss_pred EEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC-CeEEEEE
Q 035748 241 KVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN-GMVHGTA 310 (655)
Q Consensus 241 rV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren-Gtl~G~a 310 (655)
.+. .+. .++.|. +....|..+.... ...+++++..+|.|+||.-. +......
T Consensus 220 d~~---~~~--------~~~~~~-----~h~~~v~~~~~~~--~g~~l~s~s~D~~v~vwd~~~~~~~~~~ 272 (410)
T 1vyh_C 220 EVQ---TGY--------CVKTFT-----GHREWVRMVRPNQ--DGTLIASCSNDQTVRVWVVATKECKAEL 272 (410)
T ss_dssp ETT---TCC--------EEEEEE-----CCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred ECC---CCc--------EEEEEe-----CCCccEEEEEECC--CCCEEEEEcCCCeEEEEECCCCceeeEe
Confidence 542 111 112231 1223566654443 44689999999999999863 4444443
No 81
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=96.69 E-value=0.052 Score=49.46 Aligned_cols=133 Identities=11% Similarity=0.130 Sum_probs=85.5
Q ss_pred ecCCccceeeeccCCCCCCcceeEEeecccceEEEEccCC---ceEEEEecCCCCCeeEEEEeeeeec-ceeEEEeeecC
Q 035748 159 KLESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRNG---DVSVEFYTMSELPVTAMVSYVSVYK-NESVLVTGHEN 234 (655)
Q Consensus 159 klda~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~G---Dvl~E~~T~~~spVTAm~SYlsvrR-NeT~lVTGHad 234 (655)
+....++|+..-|.. +++|...|.|.+++... ............+|+++ ++. . +...+++|..|
T Consensus 148 ~~~~~v~~~~~~~~~--------l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i-~~~---~~~~~~l~~~~~d 215 (342)
T 1yfq_A 148 KVKNKIFTMDTNSSR--------LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDV-ALL---PKEQEGYACSSID 215 (342)
T ss_dssp SSCCCEEEEEECSSE--------EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEE-EEC---SGGGCEEEEEETT
T ss_pred eeCCceEEEEecCCc--------EEEEeCCCeEEEEECCccccccceeeecCCCCceeEE-EEC---CCCCCEEEEEecC
Confidence 356677887776432 89999999999997664 33444556667888874 332 4 67899999999
Q ss_pred ceEEEEEEEecCCCCCcchhhhhhccccccc----cCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC-CeEEEE
Q 035748 235 GVILIHKVYEKPNGEDWSSLVIENVGKYVAT----ENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN-GMVHGT 309 (655)
Q Consensus 235 G~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~----e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren-Gtl~G~ 309 (655)
|.|.+..+... ++.. .......|... .......+|+.+.++.- .+|++++..+|.|.||.-+ |.....
T Consensus 216 g~i~i~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~vwd~~~~~~~~~ 288 (342)
T 1yfq_A 216 GRVAVEFFDDQ--GDDY---NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR--HKFLYTAGSDGIISCWNLQTRKKIKN 288 (342)
T ss_dssp SEEEEEECCTT--CCST---TCTTCEEEECCCCCTTCCSSCCCEEEEEECTT--TCCEEEEETTSCEEEEETTTTEEEEE
T ss_pred CcEEEEEEcCC--Cccc---ccccceeeecccccccccccceeEEEEEEcCC--CCEEEEecCCceEEEEcCccHhHhhh
Confidence 99987655321 1110 00111122111 11123458999877754 4589999999999999874 666555
Q ss_pred E
Q 035748 310 A 310 (655)
Q Consensus 310 a 310 (655)
.
T Consensus 289 ~ 289 (342)
T 1yfq_A 289 F 289 (342)
T ss_dssp C
T ss_pred h
Confidence 5
No 82
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=96.68 E-value=0.042 Score=53.24 Aligned_cols=136 Identities=17% Similarity=0.175 Sum_probs=81.6
Q ss_pred ecCCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEe------cCCCCCeeEEEEeeeeecceeEEEee
Q 035748 159 KLESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFY------TMSELPVTAMVSYVSVYKNESVLVTG 231 (655)
Q Consensus 159 klda~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~------T~~~spVTAm~SYlsvrRNeT~lVTG 231 (655)
+....++++.+-|.. .+|+|+|...|.|.+++.. |.++..+. ++-..+|+++ ++. .+...|+||
T Consensus 204 ~~~~~v~~~~~~~~~-----~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v-~~~---~~g~~l~s~ 274 (393)
T 1erj_A 204 SIEDGVTTVAVSPGD-----GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSV-VFT---RDGQSVVSG 274 (393)
T ss_dssp ECSSCEEEEEECSTT-----CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEE-EEC---TTSSEEEEE
T ss_pred EcCCCcEEEEEECCC-----CCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEE-EEC---CCCCEEEEE
Confidence 345566676666632 3699999999999999765 77665553 3456788884 432 578899999
Q ss_pred ecCceEEEEEEEecCCCCCcch-hhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee-CCeEEEE
Q 035748 232 HENGVILIHKVYEKPNGEDWSS-LVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE-NGMVHGT 309 (655)
Q Consensus 232 HadG~V~~hrV~Es~~gdD~~s-Ls~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre-nGtl~G~ 309 (655)
..||.|.+..+.......+... -.......+. +....|+.+.+.. ..+|++++..+|.|.+|.. +|....+
T Consensus 275 s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~~--~~~~l~sgs~D~~v~iwd~~~~~~~~~ 347 (393)
T 1erj_A 275 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI-----GHKDFVLSVATTQ--NDEYILSGSKDRGVLFWDKKSGNPLLM 347 (393)
T ss_dssp ETTSEEEEEEC---------------CEEEEEE-----CCSSCEEEEEECG--GGCEEEEEETTSEEEEEETTTCCEEEE
T ss_pred eCCCEEEEEECCCCCCcccccCCCCCcceEEEe-----cccCcEEEEEECC--CCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence 9999998877654111110000 0000001110 1123466655443 3468999999999999986 4655555
Q ss_pred E
Q 035748 310 A 310 (655)
Q Consensus 310 a 310 (655)
.
T Consensus 348 l 348 (393)
T 1erj_A 348 L 348 (393)
T ss_dssp E
T ss_pred E
Confidence 4
No 83
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=96.68 E-value=0.061 Score=51.07 Aligned_cols=120 Identities=18% Similarity=0.221 Sum_probs=82.9
Q ss_pred CccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEE
Q 035748 162 SDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIH 240 (655)
Q Consensus 162 a~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~h 240 (655)
..++++..-|. .+|+|+|...|.|.+++.. |..+..+. +-..||+++ ++. .+..+|+||..||.|.+.
T Consensus 165 ~~v~~~~~spd------g~~lasg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l-~~s---pd~~~l~s~s~dg~i~iw 233 (321)
T 3ow8_A 165 KFILSIAYSPD------GKYLASGAIDGIINIFDIATGKLLHTLE-GHAMPIRSL-TFS---PDSQLLVTASDDGYIKIY 233 (321)
T ss_dssp SCEEEEEECTT------SSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCCCEE-EEC---TTSCEEEEECTTSCEEEE
T ss_pred ceEEEEEECCC------CCEEEEEcCCCeEEEEECCCCcEEEEEc-ccCCceeEE-EEc---CCCCEEEEEcCCCeEEEE
Confidence 44666666653 3799999999999999765 77665554 447789984 432 478899999999998765
Q ss_pred EEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee-CCeEEEEE
Q 035748 241 KVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE-NGMVHGTA 310 (655)
Q Consensus 241 rV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre-nGtl~G~a 310 (655)
.+.. +. ..+.+ .+-..+|+.+.+..- .++++++..+|.|+||.- ++....++
T Consensus 234 d~~~---~~--------~~~~~-----~~h~~~v~~~~~sp~--~~~l~s~s~D~~v~iwd~~~~~~~~~~ 286 (321)
T 3ow8_A 234 DVQH---AN--------LAGTL-----SGHASWVLNVAFCPD--DTHFVSSSSDKSVKVWDVGTRTCVHTF 286 (321)
T ss_dssp ETTT---CC--------EEEEE-----CCCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ECCC---cc--------eeEEE-----cCCCCceEEEEECCC--CCEEEEEeCCCcEEEEeCCCCEEEEEE
Confidence 4421 11 11222 123456888776654 458999999999999986 46665555
No 84
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=96.67 E-value=0.066 Score=50.64 Aligned_cols=122 Identities=14% Similarity=0.210 Sum_probs=81.4
Q ss_pred CccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEE
Q 035748 162 SDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIH 240 (655)
Q Consensus 162 a~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~h 240 (655)
.+|+++.+-|. .++++.|...|.|.+++.. |..+..+ .+-..+|+++ ++. .+...|+||..||.|.+.
T Consensus 185 ~~v~~~~~~~~------~~~l~sg~~d~~v~~wd~~~~~~~~~~-~~h~~~v~~v-~~~---p~~~~l~s~s~d~~v~iw 253 (340)
T 1got_B 185 GDVMSLSLAPD------TRLFVSGACDASAKLWDVREGMCRQTF-TGHESDINAI-CFF---PNGNAFATGSDDATCRLF 253 (340)
T ss_dssp SCEEEEEECTT------SSEEEEEETTSCEEEEETTTCSEEEEE-CCCSSCEEEE-EEC---TTSSEEEEEETTSCEEEE
T ss_pred CceEEEEECCC------CCEEEEEeCCCcEEEEECCCCeeEEEE-cCCcCCEEEE-EEc---CCCCEEEEEcCCCcEEEE
Confidence 45666666662 3699999999999999754 7765554 4457789984 432 478899999999999765
Q ss_pred EEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee-CCeEEEEE
Q 035748 241 KVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE-NGMVHGTA 310 (655)
Q Consensus 241 rV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre-nGtl~G~a 310 (655)
.+.. +.. ...+ ........|+.+.++.- .++++++..+|.|+||.- ++....+.
T Consensus 254 d~~~---~~~--------~~~~---~~~~~~~~v~~~~~s~~--g~~l~~g~~d~~i~vwd~~~~~~~~~~ 308 (340)
T 1got_B 254 DLRA---DQE--------LMTY---SHDNIICGITSVSFSKS--GRLLLAGYDDFNCNVWDALKADRAGVL 308 (340)
T ss_dssp ETTT---TEE--------EEEE---CCTTCCSCEEEEEECTT--SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ECCC---CcE--------EEEE---ccCCcccceEEEEECCC--CCEEEEECCCCeEEEEEcccCcEeeEe
Confidence 5421 110 1112 11222346788776654 468999999999999985 44444444
No 85
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=96.66 E-value=0.3 Score=51.00 Aligned_cols=118 Identities=15% Similarity=0.160 Sum_probs=78.2
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-Cc----eEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCc
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GD----VSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENG 235 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GD----vl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG 235 (655)
...|+|+..-|.. +++++.|...|.|.+++.. ++ ......++-..+|++ +++ ..+..+|+||..||
T Consensus 382 ~~~V~~v~~~~~~-----~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~-v~~---s~~g~~l~sgs~Dg 452 (694)
T 3dm0_A 382 TDMVTAIATPIDN-----ADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVED-VVL---SSDGQFALSGSWDG 452 (694)
T ss_dssp SSCEEEEECCTTC-----CSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEE-EEE---CTTSSEEEEEETTS
T ss_pred CceeEEEEecCCC-----CCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEE-EEE---CCCCCEEEEEeCCC
Confidence 4557777655432 4699999999999999654 21 122233455678887 343 35788999999999
Q ss_pred eEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeCCe
Q 035748 236 VILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKENGM 305 (655)
Q Consensus 236 ~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFrenGt 305 (655)
.|.+..+.. + ...+.+. +-..+|+.+.++. ..++++++..+|.|+||...+.
T Consensus 453 ~v~vwd~~~---~--------~~~~~~~-----~h~~~v~~~~~s~--~~~~l~s~s~D~~i~iwd~~~~ 504 (694)
T 3dm0_A 453 ELRLWDLAA---G--------VSTRRFV-----GHTKDVLSVAFSL--DNRQIVSASRDRTIKLWNTLGE 504 (694)
T ss_dssp EEEEEETTT---T--------EEEEEEE-----CCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSC
T ss_pred cEEEEECCC---C--------cceeEEe-----CCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEECCCC
Confidence 997665421 1 1112231 2234688877664 4468999999999999987544
No 86
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=96.65 E-value=0.074 Score=52.17 Aligned_cols=120 Identities=10% Similarity=0.130 Sum_probs=76.5
Q ss_pred CccceeeeccCCCCCCcceeEEeecccceEEEEccCC-c---eE---EEEecCCCCCeeEEEEeeeeecceeEEEeeecC
Q 035748 162 SDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRNG-D---VS---VEFYTMSELPVTAMVSYVSVYKNESVLVTGHEN 234 (655)
Q Consensus 162 a~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~G-D---vl---~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHad 234 (655)
.+++|+...|... .++++|+..|.|.+++.+. . -. ......-..+|+.+ ++. . .+..++++|..|
T Consensus 182 ~~v~~l~~~~~~~-----~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v-~~~-p-~~~~~l~s~~~d 253 (430)
T 2xyi_A 182 KEGYGLSWNPNLN-----GYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDV-AWH-L-LHESLFGSVADD 253 (430)
T ss_dssp SCCCCEEECTTST-----TEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEE-EEC-S-SCTTEEEEEETT
T ss_pred CCeEEEEeCCCCC-----CeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeee-EEe-C-CCCCEEEEEeCC
Confidence 3455555555422 2899999999999997663 1 11 11223456788884 432 3 378899999999
Q ss_pred ceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC
Q 035748 235 GVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN 303 (655)
Q Consensus 235 G~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren 303 (655)
|.|.+..+....... ....+ .....+|+++.++.-| ..+++++..+|.|+||.-.
T Consensus 254 g~i~i~d~~~~~~~~--------~~~~~-----~~~~~~v~~i~~~p~~-~~~l~tg~~dg~v~vwd~~ 308 (430)
T 2xyi_A 254 QKLMIWDTRNNNTSK--------PSHTV-----DAHTAEVNCLSFNPYS-EFILATGSADKTVALWDLR 308 (430)
T ss_dssp SEEEEEETTCSCSSS--------CSEEE-----ECCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETT
T ss_pred CeEEEEECCCCCCCc--------ceeEe-----ecCCCCeEEEEeCCCC-CCEEEEEeCCCeEEEEeCC
Confidence 999888776421100 01111 1234578888776543 2367788999999999863
No 87
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=96.63 E-value=0.19 Score=47.79 Aligned_cols=116 Identities=14% Similarity=0.238 Sum_probs=79.6
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-Cce--EEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDV--SVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVI 237 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDv--l~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V 237 (655)
..+|+++..-|. .+|+|.|...|.|.+++.+ ++. .+.....-..+|+++ ++. .+..+|+||..||.|
T Consensus 105 ~~~v~~v~~sp~------~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~-~~~---p~~~~l~s~s~d~~i 174 (345)
T 3fm0_A 105 ENEVKSVAWAPS------GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHV-VWH---PSQELLASASYDDTV 174 (345)
T ss_dssp SSCEEEEEECTT------SSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEE-EEC---SSSSCEEEEETTSCE
T ss_pred CCCceEEEEeCC------CCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEE-EEC---CCCCEEEEEeCCCcE
Confidence 456788888773 3699999999999999765 432 223334556788884 432 467899999999999
Q ss_pred EEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee
Q 035748 238 LIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE 302 (655)
Q Consensus 238 ~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre 302 (655)
.+..+.. .+|.. ...+ .+-..+|+.|.+..- .+|++++..+|.|+||+.
T Consensus 175 ~~w~~~~----~~~~~-----~~~~-----~~h~~~v~~l~~sp~--g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 175 KLYREEE----DDWVC-----CATL-----EGHESTVWSLAFDPS--GQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp EEEEEET----TEEEE-----EEEE-----CCCSSCEEEEEECTT--SSEEEEEETTSCEEEEEE
T ss_pred EEEEecC----CCEEE-----EEEe-----cCCCCceEEEEECCC--CCEEEEEeCCCeEEEecc
Confidence 8877653 11110 0112 122357888877654 468999999999999984
No 88
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=96.62 E-value=0.043 Score=52.21 Aligned_cols=131 Identities=15% Similarity=0.150 Sum_probs=79.2
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEE-EEecCCCCCeeEEEEeeeeecceeEEEeeecCceEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSV-EFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVIL 238 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~-E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~ 238 (655)
..+|+++..-|. .+|+|+|...|.|.++... ++..+ ....+-..+|++| ++- .+...|+||..||.|.
T Consensus 150 ~~~v~~~~~~p~------~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l-~~s---p~g~~l~s~s~D~~v~ 219 (345)
T 3fm0_A 150 TQDVKHVVWHPS------QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSL-AFD---PSGQRLASCSDDRTVR 219 (345)
T ss_dssp CSCEEEEEECSS------SSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEE-EEC---TTSSEEEEEETTSCEE
T ss_pred CCCeEEEEECCC------CCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEE-EEC---CCCCEEEEEeCCCeEE
Confidence 345666666663 3589999999999999765 55333 2334557889984 442 4778999999999998
Q ss_pred EEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC
Q 035748 239 IHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN 303 (655)
Q Consensus 239 ~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren 303 (655)
+.++....+.............+....-.+.....|..+.....+ .+++++..+|.|+||..+
T Consensus 220 iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~--~~l~s~~~d~~i~vw~~~ 282 (345)
T 3fm0_A 220 IWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLT--GALATACGDDAIRVFQED 282 (345)
T ss_dssp EEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTT--CCEEEEETTSCEEEEEEC
T ss_pred EeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCC--CEEEEEeCCCeEEEEEeC
Confidence 887764221111000000000000000112234567766665544 478888899999999865
No 89
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=96.59 E-value=0.49 Score=44.43 Aligned_cols=176 Identities=14% Similarity=0.083 Sum_probs=101.7
Q ss_pred CccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEE
Q 035748 162 SDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIH 240 (655)
Q Consensus 162 a~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~h 240 (655)
..|+++.+-|- .+|++.|...|.|.+.+.. |..+.++. +-..+|+++ ++ ..+...|+||..||.|.+.
T Consensus 66 ~~v~~~~~s~d------g~~l~s~s~D~~v~~wd~~~~~~~~~~~-~h~~~v~~~-~~---~~~~~~l~s~s~D~~i~vw 134 (319)
T 3frx_A 66 HIVQDCTLTAD------GAYALSASWDKTLRLWDVATGETYQRFV-GHKSDVMSV-DI---DKKASMIISGSRDKTIKVW 134 (319)
T ss_dssp SCEEEEEECTT------SSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEE-EE---CTTSCEEEEEETTSCEEEE
T ss_pred ccEEEEEECCC------CCEEEEEeCCCEEEEEECCCCCeeEEEc-cCCCcEEEE-EE---cCCCCEEEEEeCCCeEEEE
Confidence 45666666552 3699999999999999765 87665554 447789884 33 3578899999999999765
Q ss_pred EEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecC----ceeEEEEeeCCCcEEEEeeC-CeEEEEEeccCC
Q 035748 241 KVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIG----RMRYILSADASGKIRVFKEN-GMVHGTAAMLSS 315 (655)
Q Consensus 241 rV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvG----r~RYVlsaDasGrV~VFren-Gtl~G~aa~~~S 315 (655)
.+. +. .+..+ .+....|..+.+...+ ...+++++..+|.|++|.-+ +.....+ ..-.
T Consensus 135 d~~----~~--------~~~~~-----~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~h~ 196 (319)
T 3frx_A 135 TIK----GQ--------CLATL-----LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF-IGHN 196 (319)
T ss_dssp ETT----SC--------EEEEE-----CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEE-CCCC
T ss_pred ECC----CC--------eEEEE-----eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheee-cCCC
Confidence 441 11 11112 1223456666655433 23489999999999999874 4444444 2222
Q ss_pred Cc---eEEEeeeeeeee--ecCcccc-ccccCcccccccCCCCcccceeeecccccccee
Q 035748 316 KP---LVFLKQRLLFLT--ECGAGSL-DLRTMKLRETECEGLNNSLVRNYVFDATERSKA 369 (655)
Q Consensus 316 rp---laFlkQrllfLT--e~Gaasl-DLrtm~vr~~pCeGLN~S~i~syaFD~~~rsKa 369 (655)
.+ ++|-...-+++| +-|...+ |+++.+....-- .+..+.+.+|.+....-+
T Consensus 197 ~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~sp~~~~la 253 (319)
T 3frx_A 197 SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS---AQDEVFSLAFSPNRYWLA 253 (319)
T ss_dssp SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE---CCSCEEEEEECSSSSEEE
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec---CCCcEEEEEEcCCCCEEE
Confidence 33 333332212222 2232222 666544221110 134577777777654433
No 90
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=96.58 E-value=0.059 Score=51.73 Aligned_cols=125 Identities=14% Similarity=0.237 Sum_probs=81.5
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILI 239 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~ 239 (655)
..+++|+.+-|..+ .++++.|...|.|.+++.. |..+..+. .-..+|+++ ++. .+...|+||..||.|.+
T Consensus 196 ~~~v~~~~~~~~~~----g~~l~sgs~Dg~v~~wd~~~~~~~~~~~-~h~~~v~~v-~~~---p~~~~l~s~s~D~~v~l 266 (354)
T 2pbi_B 196 GADVLCLDLAPSET----GNTFVSGGCDKKAMVWDMRSGQCVQAFE-THESDVNSV-RYY---PSGDAFASGSDDATCRL 266 (354)
T ss_dssp SSCEEEEEECCCSS----CCEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEE-EEC---TTSSEEEEEETTSCEEE
T ss_pred CCCeEEEEEEeCCC----CCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCCeEEE-EEe---CCCCEEEEEeCCCeEEE
Confidence 34566666666433 2699999999999999754 87665554 446789984 432 47789999999999976
Q ss_pred EEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee-CCeEEEEE
Q 035748 240 HKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE-NGMVHGTA 310 (655)
Q Consensus 240 hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre-nGtl~G~a 310 (655)
..+.. +. .+..+ ........++.+.+.. ..++++++..+|.|+||.- +|......
T Consensus 267 wd~~~---~~--------~~~~~---~~~~~~~~~~~~~~s~--~g~~l~~g~~d~~i~vwd~~~~~~~~~l 322 (354)
T 2pbi_B 267 YDLRA---DR--------EVAIY---SKESIIFGASSVDFSL--SGRLLFAGYNDYTINVWDVLKGSRVSIL 322 (354)
T ss_dssp EETTT---TE--------EEEEE---CCTTCCSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred EECCC---Cc--------EEEEE---cCCCcccceeEEEEeC--CCCEEEEEECCCcEEEEECCCCceEEEE
Confidence 65432 10 01112 1112233566665553 3468999999999999985 45544443
No 91
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=96.56 E-value=0.21 Score=53.66 Aligned_cols=123 Identities=12% Similarity=0.182 Sum_probs=83.3
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-Cce-EEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDV-SVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVIL 238 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDv-l~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~ 238 (655)
..+|+|+...|..+ .+++++|...|.|++++.+ |.. .+........+|+++ ++ +...+...+++|..||.|.
T Consensus 53 ~~~V~~l~~s~~~~----~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v-~~-sp~~~~~~l~sgs~dg~I~ 126 (753)
T 3jro_A 53 EGPVWRVDWAHPKF----GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSV-QW-APHEYGPLLLVASSDGKVS 126 (753)
T ss_dssp SSCEEEEEECCTTS----CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEE-EE-CCGGGCSEEEEEETTSEEE
T ss_pred cCceEEEEecCCCC----CCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEE-EE-CCCCCCCEEEEEeCCCcEE
Confidence 56788888877642 3699999999999999776 442 333335557899984 43 2322278999999999998
Q ss_pred EEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecC-----------ceeEEEEeeCCCcEEEEeeC
Q 035748 239 IHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIG-----------RMRYILSADASGKIRVFKEN 303 (655)
Q Consensus 239 ~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvG-----------r~RYVlsaDasGrV~VFren 303 (655)
+..+.... ..... .+ .....+|+.+.++... ...+++++..+|.|++|+-.
T Consensus 127 vwdl~~~~---~~~~~------~~-----~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~ 188 (753)
T 3jro_A 127 VVEFKENG---TTSPI------II-----DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN 188 (753)
T ss_dssp EEECCSSS---CCCCE------EE-----ECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEE
T ss_pred EEEeecCC---Cccee------Ee-----ecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEecc
Confidence 88775421 10001 11 1233467777766532 46789999999999999763
No 92
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=96.55 E-value=0.021 Score=56.00 Aligned_cols=124 Identities=19% Similarity=0.103 Sum_probs=83.7
Q ss_pred ecCCccceeeeccCCCCCCcceeEEeecccceEEEEcc-CCceEE---EEecCCCCCeeEEEEeeeeecc---eeEEEee
Q 035748 159 KLESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLR-NGDVSV---EFYTMSELPVTAMVSYVSVYKN---ESVLVTG 231 (655)
Q Consensus 159 klda~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~-~GDvl~---E~~T~~~spVTAm~SYlsvrRN---eT~lVTG 231 (655)
.....++|+..-|- .+++++|+..|.|+++.- ++.... ....+-..+|++| ++. .+ ..+|+||
T Consensus 147 ~~~~~v~~~~~sp~------~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~-~~s---p~~~~~~~l~s~ 216 (450)
T 2vdu_B 147 CFSKRPNAISIAED------DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDV-HLI---KDSDGHQFIITS 216 (450)
T ss_dssp ECSSCEEEEEECTT------SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEE-EEE---ECTTSCEEEEEE
T ss_pred cCCCCceEEEEcCC------CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEE-EEc---CCCCCCcEEEEE
Confidence 34577888888773 379999999999999964 355322 1223345788884 432 35 7899999
Q ss_pred ecCceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee-CCeEEEEE
Q 035748 232 HENGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE-NGMVHGTA 310 (655)
Q Consensus 232 HadG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre-nGtl~G~a 310 (655)
..||.|.+..+.. +.- ...+ ..+-..+|+.+.++ ..+|++++..+|.|.||.- +|....+.
T Consensus 217 ~~d~~i~vwd~~~---~~~--------~~~~----~~~h~~~v~~~~~s---d~~~l~s~~~d~~v~vwd~~~~~~~~~~ 278 (450)
T 2vdu_B 217 DRDEHIKISHYPQ---CFI--------VDKW----LFGHKHFVSSICCG---KDYLLLSAGGDDKIFAWDWKTGKNLSTF 278 (450)
T ss_dssp ETTSCEEEEEESC---TTC--------EEEE----CCCCSSCEEEEEEC---STTEEEEEESSSEEEEEETTTCCEEEEE
T ss_pred cCCCcEEEEECCC---Cce--------eeee----ecCCCCceEEEEEC---CCCEEEEEeCCCeEEEEECCCCcEeeee
Confidence 9999998766532 111 1111 11234679998877 6679999999999999985 45544443
No 93
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=96.30 E-value=0.022 Score=53.24 Aligned_cols=126 Identities=18% Similarity=0.235 Sum_probs=81.8
Q ss_pred cCCccceeeeccCCCCCCcceeEEeecccceEEEEccC-Cc---eEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCc
Q 035748 160 LESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GD---VSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENG 235 (655)
Q Consensus 160 lda~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GD---vl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG 235 (655)
....++|+..-|. .+++++|...|.|.+++.+ +. ++-.+...-..+|++| ++. .+..+|++|..||
T Consensus 99 ~~~~v~~~~~~~~------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~-~~~---~~~~~l~~~~~d~ 168 (377)
T 3dwl_C 99 LNRAATFVRWSPN------EDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSL-DWH---PNNVLLAAGCADR 168 (377)
T ss_dssp CSSCEEEEECCTT------SSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEE-EEC---TTSSEEEEEESSS
T ss_pred cCCceEEEEECCC------CCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEE-EEc---CCCCEEEEEeCCC
Confidence 3667888888872 3589999999999999766 43 3445544367899984 432 4778999999999
Q ss_pred eEEEEEEEe-----cCCCCCcch-hh-hhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC
Q 035748 236 VILIHKVYE-----KPNGEDWSS-LV-IENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN 303 (655)
Q Consensus 236 ~V~~hrV~E-----s~~gdD~~s-Ls-~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren 303 (655)
.|.+..+.. .+....|.. +. -+-.+.| ....+|+.+.+..-| +|++++..+|.|++|.-.
T Consensus 169 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~sp~~--~~l~~~~~d~~i~iwd~~ 235 (377)
T 3dwl_C 169 KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY------PSGGWVHAVGFSPSG--NALAYAGHDSSVTIAYPS 235 (377)
T ss_dssp CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC------CCSSSEEEEEECTTS--SCEEEEETTTEEC-CEEC
T ss_pred EEEEEEEEecccCCCccccccccccchhhhhhcc------cCCceEEEEEECCCC--CEEEEEeCCCcEEEEECC
Confidence 999888753 111111110 00 0011112 345578887776544 489999999999999864
No 94
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=96.23 E-value=0.8 Score=42.94 Aligned_cols=216 Identities=14% Similarity=0.114 Sum_probs=110.7
Q ss_pred eeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEecCCCCCcchhhhhh
Q 035748 180 KYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWSSLVIEN 258 (655)
Q Consensus 180 kY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~ 258 (655)
..|++|...|.|.+++.+ |.++..+... ..|++ +++ +. .++.++++|..||.|.+..+ ..++ -
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~--~~~~~-~~~-s~-dg~~l~~~~~~d~~i~v~d~---~~~~--------~ 66 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVG--SNPMG-AVI-SP-DGTKVYVANAHSNDVSIIDT---ATNN--------V 66 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECS--SSEEE-EEE-CT-TSSEEEEEEGGGTEEEEEET---TTTE--------E
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecC--CCcce-EEE-CC-CCCEEEEECCCCCeEEEEEC---CCCe--------E
Confidence 357778889999999766 7777666644 33665 332 22 34456799999998876432 1111 1
Q ss_pred ccccccccCCCCCCceEEEEEeecCceeEEEEee-CCCcEEEEeeC-CeEEEEEeccCCC--ceEEEe-eeeeeeeecCc
Q 035748 259 VGKYVATENGEEGLSVTLLEVHHIGRMRYILSAD-ASGKIRVFKEN-GMVHGTAAMLSSK--PLVFLK-QRLLFLTECGA 333 (655)
Q Consensus 259 ~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaD-asGrV~VFren-Gtl~G~aa~~~Sr--plaFlk-QrllfLTe~Ga 333 (655)
.+.+ ... ..|..+.+..-| ++++++. .+|.|.||..+ |.+.... ..... -++|-. .+.++++..+-
T Consensus 67 ~~~~---~~~---~~v~~~~~spdg--~~l~~~~~~~~~v~v~d~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~ 137 (391)
T 1l0q_A 67 IATV---PAG---SSPQGVAVSPDG--KQVYVTNMASSTLSVIDTTSNTVAGTV-KTGKSPLGLALSPDGKKLYVTNNGD 137 (391)
T ss_dssp EEEE---ECS---SSEEEEEECTTS--SEEEEEETTTTEEEEEETTTTEEEEEE-ECSSSEEEEEECTTSSEEEEEETTT
T ss_pred EEEE---ECC---CCccceEECCCC--CEEEEEECCCCEEEEEECCCCeEEEEE-eCCCCcceEEECCCCCEEEEEeCCC
Confidence 1222 111 167777666544 3554444 56999999874 6665555 22222 334433 24455554443
Q ss_pred ccc---ccccCcccccccCCCCcccceeeeccccccceeeeeccCCcEEEEEEecCccccceEEeeeccccCCcc--cce
Q 035748 334 GSL---DLRTMKLRETECEGLNNSLVRNYVFDATERSKAYGYTSEGDLIHVLLLGDVTNFKCRVRSKRKFDMSEP--LAF 408 (655)
Q Consensus 334 asl---DLrtm~vr~~pCeGLN~S~i~syaFD~~~rsKaYG~T~~G~Li~v~l~gD~~~~~CrVRs~~k~d~~~p--val 408 (655)
+.+ |+++-+....-- .+..+...+|++..+ +.|-...+..-|++| |...-+|...... ...+ +++
T Consensus 138 ~~v~~~d~~~~~~~~~~~---~~~~~~~~~~~~dg~-~l~~~~~~~~~v~~~---d~~~~~~~~~~~~---~~~~~~~~~ 207 (391)
T 1l0q_A 138 KTVSVINTVTKAVINTVS---VGRSPKGIAVTPDGT-KVYVANFDSMSISVI---DTVTNSVIDTVKV---EAAPSGIAV 207 (391)
T ss_dssp TEEEEEETTTTEEEEEEE---CCSSEEEEEECTTSS-EEEEEETTTTEEEEE---ETTTTEEEEEEEC---SSEEEEEEE
T ss_pred CEEEEEECCCCcEEEEEe---cCCCcceEEECCCCC-EEEEEeCCCCEEEEE---ECCCCeEEEEEec---CCCccceEE
Confidence 332 665544322111 123445566665543 222222222334433 2222233211111 1112 222
Q ss_pred eeeceeEEEEe----cceEEEEEeec
Q 035748 409 QAIKGYLLVVC----EEKIFVYNVSA 430 (655)
Q Consensus 409 qaIKGYlLvas----~~~V~VyNvTs 430 (655)
..-..||++++ ...|.+||+.+
T Consensus 208 ~~~g~~l~~~~~~~~~~~v~~~d~~~ 233 (391)
T 1l0q_A 208 NPEGTKAYVTNVDKYFNTVSMIDTGT 233 (391)
T ss_dssp CTTSSEEEEEEECSSCCEEEEEETTT
T ss_pred CCCCCEEEEEecCcCCCcEEEEECCC
Confidence 22234788876 36899999865
No 95
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=96.20 E-value=0.7 Score=44.51 Aligned_cols=72 Identities=11% Similarity=0.135 Sum_probs=55.1
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILI 239 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~ 239 (655)
..+|+|+..-|. .+|+|.|...|.|.+.+.. |..+..+.. -..+|+++ ++ ..+...|++|..||.|.+
T Consensus 66 ~~~V~~~~~sp~------~~~l~s~s~D~~v~iWd~~~~~~~~~~~~-h~~~v~~~-~~---s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 66 SGKVYSLDWTPE------KNWIVSASQDGRLIVWNALTSQKTHAIKL-HCPWVMEC-AF---APNGQSVACGGLDSACSI 134 (380)
T ss_dssp SSCEEEEEECTT------SSCEEEEETTSEEEEEETTTTEEEEEEEC-CCTTCCCC-EE---CTTSSEEEECCSSSCCEE
T ss_pred ccEEEEEEEcCC------CCEEEEEeCCCeEEEEECCCCccceEEec-CCCCEEEE-EE---CCCCCEEEEeeCCCcEEE
Confidence 567888888773 3799999999999999765 766655543 35678773 44 247889999999999988
Q ss_pred EEEE
Q 035748 240 HKVY 243 (655)
Q Consensus 240 hrV~ 243 (655)
..+.
T Consensus 135 w~~~ 138 (380)
T 3iz6_a 135 FNLS 138 (380)
T ss_dssp EECC
T ss_pred EECC
Confidence 7764
No 96
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=96.20 E-value=0.04 Score=51.11 Aligned_cols=119 Identities=20% Similarity=0.205 Sum_probs=77.7
Q ss_pred CccceeeeccCCCCCCcceeEEeecccceEEEEccCC---ceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEE
Q 035748 162 SDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRNG---DVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVIL 238 (655)
Q Consensus 162 a~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~G---Dvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~ 238 (655)
..|+++..-|. .+++|.|...|.|.+++.++ ..+..+ .+-..+|+++ ++. .-.+..+|+||..||.|.
T Consensus 10 ~~V~~~~~s~~------g~~las~s~D~~v~iw~~~~~~~~~~~~l-~gH~~~V~~v-~~s-~~~~g~~l~s~s~D~~v~ 80 (297)
T 2pm7_B 10 EMIHDAVMDYY------GKRMATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRV-DWA-HPKFGTILASCSYDGKVM 80 (297)
T ss_dssp SCEEEEEECTT------SSEEEEEETTSCEEEEEBCSSCBCCCEEE-CCCSSCEEEE-EEC-CGGGCSEEEEEETTTEEE
T ss_pred CceEEEEECCC------CCEEEEEeCCCEEEEEecCCCCcEEEEEE-ccccCCeEEE-Eec-CCCcCCEEEEEcCCCEEE
Confidence 35666665443 46899999999999998753 344333 3456799984 442 223467999999999997
Q ss_pred EEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC
Q 035748 239 IHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN 303 (655)
Q Consensus 239 ~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren 303 (655)
+..+. .+ .|..+ ..+ .....+|..+.++.-....+++++..+|.|++|.-.
T Consensus 81 iWd~~---~~-~~~~~-----~~~-----~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~ 131 (297)
T 2pm7_B 81 IWKEE---NG-RWSQI-----AVH-----AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFK 131 (297)
T ss_dssp EEEBS---SS-CBCCC-----EEE-----CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBC
T ss_pred EEEcC---CC-ceEEE-----EEe-----ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEec
Confidence 65542 11 11111 111 123356888777654334689999999999999853
No 97
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=96.18 E-value=0.7 Score=41.83 Aligned_cols=133 Identities=11% Similarity=0.142 Sum_probs=80.8
Q ss_pred ccccccceeeeeeec-CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-Cce----EEEEecCCCCCeeEEEEee
Q 035748 146 PFWSERFQFVSAVKL-ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDV----SVEFYTMSELPVTAMVSYV 219 (655)
Q Consensus 146 p~WSerF~fvSAvkl-da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDv----l~E~~T~~~spVTAm~SYl 219 (655)
....|.+++..-+|= ...|+||.+-|.. .+|+|.|-..|.|.|.+.+ ++. ......+-..+|+++ ++
T Consensus 22 ~~~~~~~~l~~tL~GH~~~V~~v~~sp~~-----~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~-~~- 94 (340)
T 4aow_A 22 SMMTEQMTLRGTLKGHNGWVTQIATTPQF-----PDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV-VI- 94 (340)
T ss_dssp ----CEEEEEEEECCCSSCEEEEEECTTC-----TTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEE-EE-
T ss_pred EccCCceEEEEEECCccCCEEEEEEeCCC-----CCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEE-EE-
Confidence 345666766655543 5679999988854 2599999999999998654 321 122223446788883 43
Q ss_pred eeecceeEEEeeecCceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEE
Q 035748 220 SVYKNESVLVTGHENGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRV 299 (655)
Q Consensus 220 svrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~V 299 (655)
..+..+|+||..||.|.+..+.. +... ..+ ......+... .......+++++..+|.+.+
T Consensus 95 --s~dg~~l~s~~~d~~i~~~~~~~---~~~~--------~~~-----~~~~~~~~~~--~~~~~~~~l~s~s~d~~~~~ 154 (340)
T 4aow_A 95 --SSDGQFALSGSWDGTLRLWDLTT---GTTT--------RRF-----VGHTKDVLSV--AFSSDNRQIVSGSRDKTIKL 154 (340)
T ss_dssp --CTTSSEEEEEETTSEEEEEETTT---TEEE--------EEE-----ECCSSCEEEE--EECTTSSCEEEEETTSCEEE
T ss_pred --CCCCCEEEEEcccccceEEeecc---ccee--------eee-----cCCCCceeEE--EEeecCccceeecCCCeEEE
Confidence 35888999999999986543221 1100 000 1112223332 22344568999999999999
Q ss_pred EeeCCe
Q 035748 300 FKENGM 305 (655)
Q Consensus 300 FrenGt 305 (655)
|...+.
T Consensus 155 ~d~~~~ 160 (340)
T 4aow_A 155 WNTLGV 160 (340)
T ss_dssp ECTTSC
T ss_pred EEeCCC
Confidence 987543
No 98
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=96.12 E-value=0.017 Score=55.99 Aligned_cols=72 Identities=13% Similarity=0.134 Sum_probs=57.9
Q ss_pred CccceeeeccCCCCCCcceeEEeecccceEEEEcc-CCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEE
Q 035748 162 SDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLR-NGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIH 240 (655)
Q Consensus 162 a~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~-~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~h 240 (655)
..|+|+.+=|- .+|+|+|...|.|.+++. +|..+..+..+-..+||+ +++ + .+...|+||.+||+|.++
T Consensus 270 ~~V~~~~~Spd------g~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~-v~f-S--pdg~~laS~S~D~tvrvw 339 (365)
T 4h5i_A 270 KGITSMDVDMK------GELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITE-VTI-S--PDSTYVASVSAANTIHII 339 (365)
T ss_dssp SCEEEEEECTT------SCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEE-EEE-C--TTSCEEEEEETTSEEEEE
T ss_pred CCeEeEEECCC------CCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEE-EEE-C--CCCCEEEEEeCCCeEEEE
Confidence 45677777662 379999999999999975 488888876666889999 565 3 488999999999999887
Q ss_pred EEE
Q 035748 241 KVY 243 (655)
Q Consensus 241 rV~ 243 (655)
.|-
T Consensus 340 ~ip 342 (365)
T 4h5i_A 340 KLP 342 (365)
T ss_dssp ECC
T ss_pred EcC
Confidence 773
No 99
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=96.07 E-value=1.1 Score=43.26 Aligned_cols=115 Identities=17% Similarity=0.268 Sum_probs=75.6
Q ss_pred ccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEE
Q 035748 163 DPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHK 241 (655)
Q Consensus 163 ~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hr 241 (655)
.|+|+..-|- .+|+|+|...|.|.+++.+ |..+..+ .+-..+|+++ ++. .+...|+||..||.|.+..
T Consensus 125 ~v~~v~~s~d------g~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~-~~~---p~~~~l~s~s~d~~v~iwd 193 (393)
T 1erj_A 125 YIRSVCFSPD------GKFLATGAEDRLIRIWDIENRKIVMIL-QGHEQDIYSL-DYF---PSGDKLVSGSGDRTVRIWD 193 (393)
T ss_dssp BEEEEEECTT------SSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEE-EEC---TTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEECCC------CCEEEEEcCCCeEEEEECCCCcEEEEE-ccCCCCEEEE-EEc---CCCCEEEEecCCCcEEEEE
Confidence 4677777662 3699999999999999776 6555444 4457789984 443 4677899999999986554
Q ss_pred EEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC-CeE
Q 035748 242 VYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN-GMV 306 (655)
Q Consensus 242 V~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren-Gtl 306 (655)
+. .+.- ...+. -...|+.+.++ ....++++++..+|.|++|.-. |.+
T Consensus 194 ~~---~~~~--------~~~~~------~~~~v~~~~~~-~~~~~~l~~~s~d~~v~iwd~~~~~~ 241 (393)
T 1erj_A 194 LR---TGQC--------SLTLS------IEDGVTTVAVS-PGDGKYIAAGSLDRAVRVWDSETGFL 241 (393)
T ss_dssp TT---TTEE--------EEEEE------CSSCEEEEEEC-STTCCEEEEEETTSCEEEEETTTCCE
T ss_pred CC---CCee--------EEEEE------cCCCcEEEEEE-CCCCCEEEEEcCCCcEEEEECCCCcE
Confidence 32 1111 11110 01235554443 4466799999999999999863 444
No 100
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=96.01 E-value=0.1 Score=48.95 Aligned_cols=119 Identities=10% Similarity=0.096 Sum_probs=81.3
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCC-----CCCeeEEEEeeeeecceeEEEeeecC
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMS-----ELPVTAMVSYVSVYKNESVLVTGHEN 234 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~-----~spVTAm~SYlsvrRNeT~lVTGHad 234 (655)
...++++...|.. ..++++|...|.|.+++.. |..+..+.... ..+|++|. +. . .+..+|++|..|
T Consensus 165 ~~~v~~~~~~~~~-----~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~-~-~~~~~l~~~~~d 236 (416)
T 2pm9_A 165 VDEVISLAWNQSL-----AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVE-WH-P-KNSTRVATATGS 236 (416)
T ss_dssp SCCCCEEEECSSC-----TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEE-EC-S-SCTTEEEEEECC
T ss_pred CCCeeEEEeCCCC-----CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEE-EC-C-CCCCEEEEEECC
Confidence 4567777776642 3689999999999999765 77777776544 78899853 32 3 245799999999
Q ss_pred c---eEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee
Q 035748 235 G---VILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE 302 (655)
Q Consensus 235 G---~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre 302 (655)
| .|.+..+.. +.. -.+.+. .....+|+.+.+... ..++++++..+|.|+||.-
T Consensus 237 ~~~~~i~~~d~~~---~~~-------~~~~~~----~~~~~~v~~~~~s~~-~~~~l~s~~~dg~v~~wd~ 292 (416)
T 2pm9_A 237 DNDPSILIWDLRN---ANT-------PLQTLN----QGHQKGILSLDWCHQ-DEHLLLSSGRDNTVLLWNP 292 (416)
T ss_dssp SSSCCCCEEETTS---TTS-------CSBCCC----SCCSSCEEEEEECSS-CSSCEEEEESSSEEEEECS
T ss_pred CCCceEEEEeCCC---CCC-------CcEEee----cCccCceeEEEeCCC-CCCeEEEEeCCCCEEEeeC
Confidence 9 887665432 110 011221 023457888776542 4578999999999999985
No 101
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.11 Score=49.12 Aligned_cols=119 Identities=17% Similarity=0.244 Sum_probs=79.3
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEcc-C-Cc--eEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCce
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLR-N-GD--VSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGV 236 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~-~-GD--vl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~ 236 (655)
...|+|+..-|- .+|+|.|...|.|.+++. + |. -.+.....-..+|+++ ++- .+..+|+||..||.
T Consensus 107 ~~~V~~v~~sp~------g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v-~~~---p~~~~l~s~s~D~~ 176 (330)
T 2hes_X 107 ENEVKGVAWSND------GYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHV-IWH---PSEALLASSSYDDT 176 (330)
T ss_dssp --CEEEEEECTT------SCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEE-EEC---SSSSEEEEEETTSC
T ss_pred CCcEEEEEECCC------CCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEE-EEC---CCCCEEEEEcCCCe
Confidence 456778877763 479999999999999976 2 32 1222234456789884 432 37889999999999
Q ss_pred EEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC
Q 035748 237 ILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN 303 (655)
Q Consensus 237 V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren 303 (655)
|.+..+... +| +.++.+ .+-..+|..+.+..-+...+++++..+|.|+||+-+
T Consensus 177 i~iW~~~~~----~~-----~~~~~~-----~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~ 229 (330)
T 2hes_X 177 VRIWKDYDD----DW-----ECVAVL-----NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYM 229 (330)
T ss_dssp EEEEEEETT----EE-----EEEEEE-----CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEE
T ss_pred EEEEECCCC----Ce-----eEEEEc-----cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEec
Confidence 977665431 11 111222 122346888777766556789999999999999753
No 102
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=95.96 E-value=0.021 Score=55.69 Aligned_cols=28 Identities=18% Similarity=0.057 Sum_probs=20.1
Q ss_pred CceEEEEEeecCceeEEEEeeCCCcEEEEeeC
Q 035748 272 LSVTLLEVHHIGRMRYILSADASGKIRVFKEN 303 (655)
Q Consensus 272 ~pVt~LE~hrvGr~RYVlsaDasGrV~VFren 303 (655)
.+|+.+.. ..++++++..+|.|.||+-+
T Consensus 386 ~~v~~l~~----~~~~l~s~s~Dg~i~iwd~~ 413 (435)
T 1p22_A 386 GRVFRLQF----DEFQIVSSSHDDTILIWDFL 413 (435)
T ss_dssp SCCCCEEE----CSSCEEECCSSSEEEEEC--
T ss_pred CCeEEEEe----CCCEEEEEeCCCEEEEEECC
Confidence 35666544 34689999999999999864
No 103
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=95.76 E-value=0.7 Score=41.91 Aligned_cols=136 Identities=8% Similarity=0.091 Sum_probs=76.1
Q ss_pred ecCCccceeeeccCCCCCCcceeEEeecccceEEEEcc-CCceEEEEecCCCCCeeEEEE--------------------
Q 035748 159 KLESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLR-NGDVSVEFYTMSELPVTAMVS-------------------- 217 (655)
Q Consensus 159 klda~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~-~GDvl~E~~T~~~spVTAm~S-------------------- 217 (655)
....+++++...|..+ .+++++|...|.|.+++. .|..+..+.... .+.++..
T Consensus 125 ~~~~~v~~~~~~~~~~----~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~ 198 (368)
T 3mmy_A 125 QHDAPVKTIHWIKAPN----YSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE--RCYCADVIYPMAVVATAERGLIVYQLE 198 (368)
T ss_dssp ECSSCEEEEEEEECSS----CEEEEEEETTSEEEEECSSCSSCSEEEECSS--CEEEEEEETTEEEEEEGGGCEEEEECS
T ss_pred cccCceEEEEEEeCCC----CCEEEEccCCCcEEEEECCCCcEEEEEecCC--CceEEEecCCeeEEEeCCCcEEEEEec
Confidence 3577888888866444 368999999999999974 477666655432 2222111
Q ss_pred ----------------------eeeeecceeEEEeeecCceEEEEEEEecCCCCCcchhhhhhcccccccc-------CC
Q 035748 218 ----------------------YVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWSSLVIENVGKYVATE-------NG 268 (655)
Q Consensus 218 ----------------------YlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e-------~~ 268 (655)
......+...+++|..||.|.+..+... .. ......+.... ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~ 270 (368)
T 3mmy_A 199 NQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPP----NP----AKDNFTFKCHRSNGTNTSAP 270 (368)
T ss_dssp SSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCS----CH----HHHSEEEECSEEC----CCC
T ss_pred cccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCC----Cc----cccceeeeeeeccccccccc
Confidence 0000012222566666666544433210 00 00111111000 01
Q ss_pred CCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC-CeEEEEE
Q 035748 269 EEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN-GMVHGTA 310 (655)
Q Consensus 269 ~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren-Gtl~G~a 310 (655)
....+|+.+.++.-| +|++++..+|.|+||.-+ |......
T Consensus 271 ~~~~~v~~~~~sp~~--~~l~s~~~dg~i~iwd~~~~~~~~~~ 311 (368)
T 3mmy_A 271 QDIYAVNGIAFHPVH--GTLATVGSDGRFSFWDKDARTKLKTS 311 (368)
T ss_dssp EEECCEEEEEECTTT--CCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred ccccceEEEEEecCC--CEEEEEccCCeEEEEECCCCcEEEEe
Confidence 112268888776644 689999999999999974 6666665
No 104
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=95.63 E-value=1.2 Score=49.72 Aligned_cols=91 Identities=19% Similarity=0.257 Sum_probs=63.2
Q ss_pred cccccceeeeeeec-CCccceeeeccCCCCCCcceeEEeecccceEEEEccCCceEEE---Ee---cCCCCCeeEEEEee
Q 035748 147 FWSERFQFVSAVKL-ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRNGDVSVE---FY---TMSELPVTAMVSYV 219 (655)
Q Consensus 147 ~WSerF~fvSAvkl-da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~GDvl~E---~~---T~~~spVTAm~SYl 219 (655)
.+.+.|+.+..++. ...|+++..=| +| |+|+|++.|.|.+++.++..++- .. .+-...|+++.--.
T Consensus 560 ~~~~g~~~~~~l~~h~~~V~svafSp----dG---~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~ 632 (902)
T 2oaj_A 560 GVRQGFMPSTAVHANKGKTSAINNSN----IG---FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVI 632 (902)
T ss_dssp TCSEEEEEEEEECCCSCSEEEEEECB----TS---EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEE
T ss_pred CCCCccceeEEEEcCCCcEEEEEecC----Cc---EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEE
Confidence 45556777777663 67888887443 66 89999999999999888765542 21 14456799843211
Q ss_pred eeecc----eeEEEeeecCceEEEEEEEe
Q 035748 220 SVYKN----ESVLVTGHENGVILIHKVYE 244 (655)
Q Consensus 220 svrRN----eT~lVTGHadG~V~~hrV~E 244 (655)
.-... ...|++|..||.|.+..|.-
T Consensus 633 ~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p 661 (902)
T 2oaj_A 633 MEYGDDGYSSILMVCGTDMGEVITYKILP 661 (902)
T ss_dssp EECTTSSSEEEEEEEEETTSEEEEEEEEE
T ss_pred EecCCCCCcceEEEEEecCCcEEEEEEec
Confidence 11223 37999999999999888843
No 105
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=95.63 E-value=0.088 Score=50.05 Aligned_cols=121 Identities=16% Similarity=0.157 Sum_probs=77.6
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEE-------ecCCCCCeeEEEEeeeeecce-eEEEee
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEF-------YTMSELPVTAMVSYVSVYKNE-SVLVTG 231 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~-------~T~~~spVTAm~SYlsvrRNe-T~lVTG 231 (655)
..+|+++..-|. .++++.| +.|.|.+++.. +.-.... ......+|+++ ++. .+. .+|++|
T Consensus 177 ~~~v~~~~~~~~------~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~---p~~~~~l~s~ 245 (447)
T 3dw8_B 177 TYHINSISINSD------YETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAA-EFH---PNSCNTFVYS 245 (447)
T ss_dssp SSCCCEEEECTT------SSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEE-EEC---SSCTTEEEEE
T ss_pred CcceEEEEEcCC------CCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEE-EEC---CCCCcEEEEE
Confidence 567889888883 3589999 79999999877 4444442 23556788884 432 344 899999
Q ss_pred ecCceEEEEEEEecCCCCCcchhhhhhccccccccCCC-------CCCceEEEEEeecCceeEEEEeeCCCcEEEEee
Q 035748 232 HENGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGE-------EGLSVTLLEVHHIGRMRYILSADASGKIRVFKE 302 (655)
Q Consensus 232 HadG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~-------d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre 302 (655)
..||.|.+..+....... ..++.|....... ...+|+.+.+.. ..+|+++++. |.|+||.-
T Consensus 246 ~~dg~i~iwd~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~~~~-~~v~iwd~ 313 (447)
T 3dw8_B 246 SSKGTIRLCDMRASALCD-------RHSKLFEEPEDPSNRSFFSEIISSISDVKFSH--SGRYMMTRDY-LSVKVWDL 313 (447)
T ss_dssp ETTSCEEEEETTTCSSSC-------TTCEEECCC-----CCHHHHHTTCEEEEEECT--TSSEEEEEES-SEEEEEET
T ss_pred eCCCeEEEEECcCCcccc-------ceeeEeccCCCccccccccccCceEEEEEECC--CCCEEEEeeC-CeEEEEeC
Confidence 999999776654311000 0112221111100 113788888776 4568888888 99999975
No 106
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.42 Score=50.26 Aligned_cols=135 Identities=12% Similarity=0.053 Sum_probs=76.8
Q ss_pred eecCCccceeeeccCCCCC---CcceeEEeeccc-------------------ceEEEEccC-CceEEEE---ecCCCCC
Q 035748 158 VKLESDPTCINILPFRDYE---GHSKYVAVGDDK-------------------GRVFVFLRN-GDVSVEF---YTMSELP 211 (655)
Q Consensus 158 vklda~aTal~vLP~r~~~---glskY~AVGD~~-------------------Grv~Vfs~~-GDvl~E~---~T~~~sp 211 (655)
..++..|.|+...|..... .-..|+|||... |.|.+.+-+ |.+.+.. -.....+
T Consensus 130 ~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~ 209 (524)
T 2j04_B 130 YNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGE 209 (524)
T ss_dssp EECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCS
T ss_pred EECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCc
Confidence 3458999999999975322 245788887643 556666544 4432110 1112346
Q ss_pred eeEEEEeeeee----cceeEEEeeecCceEEEEEEEecCCC-CCcchhhhhhccccccccCCCCCCceEEEEEeecCcee
Q 035748 212 VTAMVSYVSVY----KNESVLVTGHENGVILIHKVYEKPNG-EDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMR 286 (655)
Q Consensus 212 VTAm~SYlsvr----RNeT~lVTGHadG~V~~hrV~Es~~g-dD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~R 286 (655)
|+. +++. .. -+..+|+||..||.|.+..+...... .....+. +....+ .....+|+.+-.+. + .
T Consensus 210 V~~-v~ws-p~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~-~p~~~l-----~~h~~~v~sv~~s~-~--~ 278 (524)
T 2j04_B 210 VWD-LKWH-EGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCE-KPSLTL-----SLADSLITTFDFLS-P--T 278 (524)
T ss_dssp EEE-EEEC-SSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCC-SCSEEE-----CCTTTCEEEEEESS-S--S
T ss_pred EEE-EEEC-CCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeec-CceEEE-----EcCCCCEEEEEecC-C--C
Confidence 877 4543 32 12469999999999987776432110 0000000 000112 12236788887764 3 3
Q ss_pred EEEEeeCCCcEEEEeeC
Q 035748 287 YILSADASGKIRVFKEN 303 (655)
Q Consensus 287 YVlsaDasGrV~VFren 303 (655)
+++++..+|.|++|.-+
T Consensus 279 ~lasgs~DgtV~lWD~~ 295 (524)
T 2j04_B 279 TVVCGFKNGFVAEFDLT 295 (524)
T ss_dssp EEEEEETTSEEEEEETT
T ss_pred eEEEEeCCCEEEEEECC
Confidence 79999999999999875
No 107
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=95.40 E-value=0.15 Score=49.09 Aligned_cols=120 Identities=16% Similarity=0.196 Sum_probs=76.9
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCC------CCeeEEEEeeeeecceeEEEeeec
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSE------LPVTAMVSYVSVYKNESVLVTGHE 233 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~------spVTAm~SYlsvrRNeT~lVTGHa 233 (655)
...|+++..-|. .+++|.|...|.|.+++.. |..+..+..... ..|++ +++- .+..+|++|..
T Consensus 249 ~~~v~~v~~~p~------~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s---~~g~~l~~g~~ 318 (380)
T 3iz6_a 249 EGDINSVKFFPD------GQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTS-VAFS---ISGRLLFAGYS 318 (380)
T ss_dssp SSCCCEEEECTT------SSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSE-EEEC---SSSSEEEEECT
T ss_pred CCCeEEEEEecC------CCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEE-EEEC---CCCCEEEEEEC
Confidence 345677776662 3689999999999999665 776555443211 23666 4442 47889999999
Q ss_pred CceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeCC
Q 035748 234 NGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKENG 304 (655)
Q Consensus 234 dG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFrenG 304 (655)
||.|.+..+ ..++- +..+.. ....-..+|+.|-+..= .++++++..+|.|+||.-.+
T Consensus 319 dg~i~vwd~---~~~~~--------~~~~~~-~~~~h~~~v~~l~~s~d--g~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 319 NGDCYVWDT---LLAEM--------VLNLGT-LQNSHEGRISCLGLSSD--GSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp TSCEEEEET---TTCCE--------EEEECC-SCSSCCCCCCEEEECSS--SSEEEEECTTSCEEEEECCS
T ss_pred CCCEEEEEC---CCCce--------EEEEec-ccCCCCCceEEEEECCC--CCEEEEeeCCCCEEEEecCC
Confidence 999876432 22211 111100 01122346888777654 45899999999999998543
No 108
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=95.37 E-value=0.45 Score=49.98 Aligned_cols=150 Identities=9% Similarity=0.045 Sum_probs=90.6
Q ss_pred CccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceE-----------EEEecCCCCCeeEEEEeeeeecceeEEE
Q 035748 162 SDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVS-----------VEFYTMSELPVTAMVSYVSVYKNESVLV 229 (655)
Q Consensus 162 a~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl-----------~E~~T~~~spVTAm~SYlsvrRNeT~lV 229 (655)
..|.++...|.....+-..++|.|...|.|.+++.+ |... ..+ .+...+|++ +++. +...|+
T Consensus 208 ~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l-~~h~~~v~s-v~~s----~~~~la 281 (524)
T 2j04_B 208 GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTL-SLADSLITT-FDFL----SPTTVV 281 (524)
T ss_dssp CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEE-CCTTTCEEE-EEES----SSSEEE
T ss_pred CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEE-EcCCCCEEE-EEec----CCCeEE
Confidence 457788888864334446799999999999999765 3211 122 234578888 4443 234799
Q ss_pred eeecCceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEE-eecCceeEEEEeeCCCcEEEEeeC-----
Q 035748 230 TGHENGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEV-HHIGRMRYILSADASGKIRVFKEN----- 303 (655)
Q Consensus 230 TGHadG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~-hrvGr~RYVlsaDasGrV~VFren----- 303 (655)
||+.||.|.+..+.. +.-. ...+ ..-..+|+.+.. |..-...+++++-.+|.|+||.-.
T Consensus 282 sgs~DgtV~lWD~~~---~~~~-------~~~~-----~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~ 346 (524)
T 2j04_B 282 CGFKNGFVAEFDLTD---PEVP-------SFYD-----QVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATT 346 (524)
T ss_dssp EEETTSEEEEEETTB---CSSC-------SEEE-----ECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHH
T ss_pred EEeCCCEEEEEECCC---CCCc-------eEEe-----ecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcc
Confidence 999999997665532 1110 0112 112356888753 433223789999999999999863
Q ss_pred CeEEEEEeccCCCceEEEeeeeeeeeecC
Q 035748 304 GMVHGTAAMLSSKPLVFLKQRLLFLTECG 332 (655)
Q Consensus 304 Gtl~G~aa~~~SrplaFlkQrllfLTe~G 332 (655)
.++.|.........|+|-...-.+++..+
T Consensus 347 ~~~~~~~~~~~v~~v~fsp~~~~l~s~~~ 375 (524)
T 2j04_B 347 KTTVSRFRGSNLVPVVYCPQIYSYIYSDG 375 (524)
T ss_dssp CEEEEECSCCSCCCEEEETTTTEEEEECS
T ss_pred cccccccccCcccceEeCCCcCeEEEeCC
Confidence 25555441112456888764323444433
No 109
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=95.22 E-value=0.23 Score=46.09 Aligned_cols=110 Identities=12% Similarity=0.043 Sum_probs=69.6
Q ss_pred ceeEEeecccceEEEEccC-Cce---EEEEecCCCCCeeEEEEeeeee-cceeEEEeeecCceEEEEEEEecCCCCCcch
Q 035748 179 SKYVAVGDDKGRVFVFLRN-GDV---SVEFYTMSELPVTAMVSYVSVY-KNESVLVTGHENGVILIHKVYEKPNGEDWSS 253 (655)
Q Consensus 179 skY~AVGD~~Grv~Vfs~~-GDv---l~E~~T~~~spVTAm~SYlsvr-RNeT~lVTGHadG~V~~hrV~Es~~gdD~~s 253 (655)
.+++|+|...|.|.+++.+ +.- +.....+-..+|++ +++- .- .+..+|+||..||.|.+..+.. .. ..|..
T Consensus 170 ~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~-v~~s-p~~~~~~~las~s~D~~v~iWd~~~-~~-~~~~~ 245 (297)
T 2pm7_B 170 SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD-VAWS-PTVLLRSYMASVSQDRTCIIWTQDN-EQ-GPWKK 245 (297)
T ss_dssp CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEE-EEEC-CCCSSSEEEEEEETTSCEEEEEESS-TT-SCCEE
T ss_pred cceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEE-EEEC-CCCCCceEEEEEECCCcEEEEEeCC-CC-Cccce
Confidence 4799999999999999655 441 22222344678998 4543 31 2358999999999997665432 10 11211
Q ss_pred hhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC
Q 035748 254 LVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN 303 (655)
Q Consensus 254 Ls~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren 303 (655)
. .+ ....-..+|..+....- .++++++..+|.|+||+.+
T Consensus 246 ~------~~---~~~~~~~~v~~~~~s~~--g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 246 T------LL---KEEKFPDVLWRASWSLS--GNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp E------ES---SSSCCSSCEEEEEECSS--SCCEEEEETTSCEEEEEEC
T ss_pred e------ee---ecccCCCcEEEEEECCC--CCEEEEEcCCCcEEEEEEC
Confidence 0 01 00111346777766654 4689999999999999875
No 110
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=95.03 E-value=2 Score=38.96 Aligned_cols=221 Identities=14% Similarity=0.213 Sum_probs=114.4
Q ss_pred eeEEeecccceEEEEccCCceEEEEecCC-----CCCeeEEEEeeee-ecceeEEEeeec-CceEEEEEEEecCCCCCcc
Q 035748 180 KYVAVGDDKGRVFVFLRNGDVSVEFYTMS-----ELPVTAMVSYVSV-YKNESVLVTGHE-NGVILIHKVYEKPNGEDWS 252 (655)
Q Consensus 180 kY~AVGD~~Grv~Vfs~~GDvl~E~~T~~-----~spVTAm~SYlsv-rRNeT~lVTGHa-dG~V~~hrV~Es~~gdD~~ 252 (655)
++++++...|+|++|+++|..+..+.+.. ...++.+ + + -.+..++|++.. ++.|... . ++|.-.
T Consensus 42 ~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i-~---~~~~~g~l~v~~~~~~~~i~~~---d-~~g~~~- 112 (286)
T 1q7f_A 42 DIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRV-A---VVRNSGDIIVTERSPTHQIQIY---N-QYGQFV- 112 (286)
T ss_dssp CEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEE-E---EETTTTEEEEEECGGGCEEEEE---C-TTSCEE-
T ss_pred CEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEE-E---EEcCCCeEEEEcCCCCCEEEEE---C-CCCcEE-
Confidence 45556567799999999999877765421 1223332 2 2 257788888864 7766432 2 333211
Q ss_pred hhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEee-CCCcEEEEeeCCeEEEEEecc--CC--CceEEEeeeeee
Q 035748 253 SLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSAD-ASGKIRVFKENGMVHGTAAML--SS--KPLVFLKQRLLF 327 (655)
Q Consensus 253 sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaD-asGrV~VFrenGtl~G~aa~~--~S--rplaFlkQrllf 327 (655)
+.+ .. .....+..+-+..-| + +.++| .+++|.+|..+|.+...+... .. +-|++-++.-+|
T Consensus 113 -------~~~---~~-~~~~~~~~i~~~~~g--~-l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~ 178 (286)
T 1q7f_A 113 -------RKF---GA-TILQHPRGVTVDNKG--R-IIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIF 178 (286)
T ss_dssp -------EEE---CT-TTCSCEEEEEECTTS--C-EEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEE
T ss_pred -------EEe---cC-ccCCCceEEEEeCCC--C-EEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEE
Confidence 112 00 111234444444434 3 33444 578899999988876655211 11 235555554577
Q ss_pred eeecCcc---ccccccCcccccccCCCCcccceeeeccccccceeeeeccCCc-EEEEEEecCccccceEEeeeccccCC
Q 035748 328 LTECGAG---SLDLRTMKLRETECEGLNNSLVRNYVFDATERSKAYGYTSEGD-LIHVLLLGDVTNFKCRVRSKRKFDMS 403 (655)
Q Consensus 328 LTe~Gaa---slDLrtm~vr~~pCeGLN~S~i~syaFD~~~rsKaYG~T~~G~-Li~v~l~gD~~~~~CrVRs~~k~d~~ 403 (655)
++.++.. ..|...-.++....+|. -..+...+||+.. +.|-.+.... -|.+|= -|. .+...+ .......
T Consensus 179 v~~~~~~~i~~~~~~g~~~~~~~~~g~-~~~p~~i~~d~~G--~l~v~~~~~~~~i~~~~-~~g-~~~~~~--~~~~~~~ 251 (286)
T 1q7f_A 179 ISDNRAHCVKVFNYEGQYLRQIGGEGI-TNYPIGVGINSNG--EILIADNHNNFNLTIFT-QDG-QLISAL--ESKVKHA 251 (286)
T ss_dssp EEEGGGTEEEEEETTCCEEEEESCTTT-SCSEEEEEECTTC--CEEEEECSSSCEEEEEC-TTS-CEEEEE--EESSCCS
T ss_pred EEECCCCEEEEEcCCCCEEEEEccCCc-cCCCcEEEECCCC--CEEEEeCCCCEEEEEEC-CCC-CEEEEE--cccCCCC
Confidence 7765433 33544322333333331 1346677788753 5666555443 566552 121 111111 1111122
Q ss_pred cccceee-eceeEEEEec-ceEEEEEeec
Q 035748 404 EPLAFQA-IKGYLLVVCE-EKIFVYNVSA 430 (655)
Q Consensus 404 ~pvalqa-IKGYlLvas~-~~V~VyNvTs 430 (655)
.|..++- =.|.|+|++. ..|.||+...
T Consensus 252 ~~~~i~~~~~g~l~vs~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 252 QCFDVALMDDGSVVLASKDYRLYIYRYVQ 280 (286)
T ss_dssp CEEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred cceeEEECCCCcEEEECCCCeEEEEEccc
Confidence 2333332 2689999875 4699998755
No 111
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=94.86 E-value=2.6 Score=39.52 Aligned_cols=239 Identities=13% Similarity=0.117 Sum_probs=123.7
Q ss_pred eeeeeeecCCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEee
Q 035748 153 QFVSAVKLESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTG 231 (655)
Q Consensus 153 ~fvSAvklda~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTG 231 (655)
+.+.-++....++|+.+-|-.+ ..++.|...|.|.+++.. |.++..+.... +|+. +++ +. .+..++++|
T Consensus 23 ~~~~~~~~~~~~~~~~~s~dg~-----~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~--~v~~-~~~-sp-dg~~l~~~~ 92 (391)
T 1l0q_A 23 KVTATIPVGSNPMGAVISPDGT-----KVYVANAHSNDVSIIDTATNNVIATVPAGS--SPQG-VAV-SP-DGKQVYVTN 92 (391)
T ss_dssp EEEEEEECSSSEEEEEECTTSS-----EEEEEEGGGTEEEEEETTTTEEEEEEECSS--SEEE-EEE-CT-TSSEEEEEE
T ss_pred eEEEEeecCCCcceEEECCCCC-----EEEEECCCCCeEEEEECCCCeEEEEEECCC--Cccc-eEE-CC-CCCEEEEEE
Confidence 3444455666778887766321 234677788999999864 88877776553 7777 343 23 355677899
Q ss_pred ecCceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee-CCeEEEEE
Q 035748 232 HENGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE-NGMVHGTA 310 (655)
Q Consensus 232 HadG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre-nGtl~G~a 310 (655)
..||.|.+..+.. +. ..+.+ . ....+..+.+..-|+ ..++++..+|.|.+|.- .|.+....
T Consensus 93 ~~~~~v~v~d~~~---~~--------~~~~~---~---~~~~~~~~~~s~dg~-~l~~~~~~~~~v~~~d~~~~~~~~~~ 154 (391)
T 1l0q_A 93 MASSTLSVIDTTS---NT--------VAGTV---K---TGKSPLGLALSPDGK-KLYVTNNGDKTVSVINTVTKAVINTV 154 (391)
T ss_dssp TTTTEEEEEETTT---TE--------EEEEE---E---CSSSEEEEEECTTSS-EEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEECCC---Ce--------EEEEE---e---CCCCcceEEECCCCC-EEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 9999987654321 11 01112 1 112356665554443 23356677899999985 57766555
Q ss_pred eccCCC--ceEEEe-eeeeeeeecCcc---ccccccCcccccccCCCCcccceeeeccccccceeeeec--cCCcEEEEE
Q 035748 311 AMLSSK--PLVFLK-QRLLFLTECGAG---SLDLRTMKLRETECEGLNNSLVRNYVFDATERSKAYGYT--SEGDLIHVL 382 (655)
Q Consensus 311 a~~~Sr--plaFlk-QrllfLTe~Gaa---slDLrtm~vr~~pCeGLN~S~i~syaFD~~~rsKaYG~T--~~G~Li~v~ 382 (655)
..... .++|-. .+.++++..+-+ ..|+++.+....-- .+..+...+|++..+.-+.+-. .+| -|++|
T Consensus 155 -~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~~-~v~~~ 229 (391)
T 1l0q_A 155 -SVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK---VEAAPSGIAVNPEGTKAYVTNVDKYFN-TVSMI 229 (391)
T ss_dssp -ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE---CSSEEEEEEECTTSSEEEEEEECSSCC-EEEEE
T ss_pred -ecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe---cCCCccceEECCCCCEEEEEecCcCCC-cEEEE
Confidence 32322 333333 345666654433 33666644322111 1234555566554433222222 122 22222
Q ss_pred EecCccccceEEeeeccccCCcccce--eeeceeEEEEec--ceEEEEEeec
Q 035748 383 LLGDVTNFKCRVRSKRKFDMSEPLAF--QAIKGYLLVVCE--EKIFVYNVSA 430 (655)
Q Consensus 383 l~gD~~~~~CrVRs~~k~d~~~pval--qaIKGYlLvas~--~~V~VyNvTs 430 (655)
|...-+|...-.. ...+..+ ..-..||++++. ..|.+||+.+
T Consensus 230 ---d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 230 ---DTGTNKITARIPV---GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp ---ETTTTEEEEEEEC---CSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred ---ECCCCeEEEEEec---CCCccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence 2222222111111 1223333 222347877753 6799999876
No 112
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=94.82 E-value=0.16 Score=47.70 Aligned_cols=121 Identities=14% Similarity=0.108 Sum_probs=79.1
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-Cce-EEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDV-SVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVIL 238 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDv-l~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~ 238 (655)
...|+|+..-|. .+++|.|...|.|.+++.. |.. ++....+-..+|+++ ++. .-.+..+|+||..||.|.
T Consensus 13 ~~~V~~v~~s~~------g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v-~~~-~~~~~~~l~s~s~D~~v~ 84 (316)
T 3bg1_A 13 EDMIHDAQMDYY------GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQV-AWA-HPMYGNILASCSYDRKVI 84 (316)
T ss_dssp -CCEEEEEECGG------GCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEE-EEC-CGGGSSCEEEEETTSCEE
T ss_pred cCeEEEeeEcCC------CCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEE-EeC-CCCCCCEEEEEECCCEEE
Confidence 356777777653 3689999999999999765 542 222234556799984 443 223467999999999997
Q ss_pred EEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC
Q 035748 239 IHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN 303 (655)
Q Consensus 239 ~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren 303 (655)
+-.+. .+. |.. ...+ .+-..+|+.+.++.-+...+++++..+|.|++|.-.
T Consensus 85 iWd~~---~~~-~~~-----~~~~-----~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~ 135 (316)
T 3bg1_A 85 IWREE---NGT-WEK-----SHEH-----AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYT 135 (316)
T ss_dssp EECCS---SSC-CCE-----EEEE-----CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEEC
T ss_pred EEECC---CCc-ceE-----EEEc-----cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecC
Confidence 65432 111 110 1112 122346777777655456799999999999999864
No 113
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=94.80 E-value=0.3 Score=46.90 Aligned_cols=74 Identities=16% Similarity=0.227 Sum_probs=58.7
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccce-EEEEccC-CceEEEEecC-CCCCeeEEEEeeeeecceeEEEeeecCceE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGR-VFVFLRN-GDVSVEFYTM-SELPVTAMVSYVSVYKNESVLVTGHENGVI 237 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Gr-v~Vfs~~-GDvl~E~~T~-~~spVTAm~SYlsvrRNeT~lVTGHadG~V 237 (655)
..+|+|+..-|- .+|+|.|...|. |.+++.. |..+.++..+ -..+|++ +++- .+..+|++|..||.|
T Consensus 195 ~~~v~~~~~s~~------g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~-~~~s---~~~~~l~s~s~d~~v 264 (355)
T 3vu4_A 195 TNPIKMVRLNRK------SDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVD-MKWS---TDGSKLAVVSDKWTL 264 (355)
T ss_dssp SSCEEEEEECTT------SSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEE-EEEC---TTSCEEEEEETTCEE
T ss_pred CCceEEEEECCC------CCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEE-EEEC---CCCCEEEEEECCCEE
Confidence 456788877772 279999999998 9999665 9999888844 6789998 4442 478899999999999
Q ss_pred EEEEEEe
Q 035748 238 LIHKVYE 244 (655)
Q Consensus 238 ~~hrV~E 244 (655)
.+..+.+
T Consensus 265 ~iw~~~~ 271 (355)
T 3vu4_A 265 HVFEIFN 271 (355)
T ss_dssp EEEESSC
T ss_pred EEEEccC
Confidence 8777654
No 114
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=94.69 E-value=0.74 Score=46.50 Aligned_cols=126 Identities=10% Similarity=-0.027 Sum_probs=83.7
Q ss_pred eecCCccceeeeccCCCCCCcceeEE----eecccceEEEEccC-C--------ceEEEEe--cCCCCCeeEEEEeeeee
Q 035748 158 VKLESDPTCINILPFRDYEGHSKYVA----VGDDKGRVFVFLRN-G--------DVSVEFY--TMSELPVTAMVSYVSVY 222 (655)
Q Consensus 158 vklda~aTal~vLP~r~~~glskY~A----VGD~~Grv~Vfs~~-G--------Dvl~E~~--T~~~spVTAm~SYlsvr 222 (655)
+.++..++++..-|. .+|+| .|...|.|.|++.+ + ..+..+. .+-..+|+++ ++ +.
T Consensus 89 ~~~~~~v~~l~~spd------g~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v-~~-~p- 159 (434)
T 2oit_A 89 VPMKFPIHHLALSCD------NLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDM-KW-NP- 159 (434)
T ss_dssp ECCSSCEEEEEECTT------SCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEE-EE-CS-
T ss_pred ccCCCcccEEEEcCC------CCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEE-EE-CC-
Confidence 456778999888764 36888 68899999999654 3 2233333 3346789984 44 23
Q ss_pred cceeEEEeeecCceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee
Q 035748 223 KNESVLVTGHENGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE 302 (655)
Q Consensus 223 RNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre 302 (655)
.+..+|+||..||.|.+..+... .. .... ......|+.+..+.- ..|++++..+|.|++|+.
T Consensus 160 ~~~~~las~s~Dg~v~iwD~~~~------~~-----~~~~-----~~~~~~v~~v~wspd--g~~lasgs~dg~v~iwd~ 221 (434)
T 2oit_A 160 TVPSMVAVCLADGSIAVLQVTET------VK-----VCAT-----LPSTVAVTSVCWSPK--GKQLAVGKQNGTVVQYLP 221 (434)
T ss_dssp SCTTEEEEEETTSCEEEEEESSS------EE-----EEEE-----ECGGGCEEEEEECTT--SSCEEEEETTSCEEEECT
T ss_pred CCCCEEEEEECCCeEEEEEcCCC------cc-----eeec-----cCCCCceeEEEEcCC--CCEEEEEcCCCcEEEEcc
Confidence 24689999999999988776531 00 0011 011346777766644 468999999999999998
Q ss_pred CCeEEEEE
Q 035748 303 NGMVHGTA 310 (655)
Q Consensus 303 nGtl~G~a 310 (655)
.|......
T Consensus 222 ~~~~~~~~ 229 (434)
T 2oit_A 222 TLQEKKVI 229 (434)
T ss_dssp TCCEEEEE
T ss_pred CCcccccc
Confidence 86655444
No 115
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=94.59 E-value=0.42 Score=46.56 Aligned_cols=150 Identities=11% Similarity=0.049 Sum_probs=76.2
Q ss_pred eeeeeeecCCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEe------------------------cC
Q 035748 153 QFVSAVKLESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFY------------------------TM 207 (655)
Q Consensus 153 ~fvSAvklda~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~------------------------T~ 207 (655)
+...-.....+++++..-|.. ..++++|...|.|.+++.. |....+.. ++
T Consensus 178 ~~~~~~~~~~~v~~v~~~p~~-----~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 252 (393)
T 4gq1_A 178 PILAGYPLSSPGISVQFRPSN-----PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSG 252 (393)
T ss_dssp EEEEEEECSSCEEEEEEETTE-----EEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------C
T ss_pred eeeeecCCCCCcEEEEECCCC-----CceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccc
Confidence 334444557888888887742 3589999999999999654 55444332 22
Q ss_pred CCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEecCCCCCc--chhhhhhccccccccCCCCCCceEEEEEeecCce
Q 035748 208 SELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDW--SSLVIENVGKYVATENGEEGLSVTLLEVHHIGRM 285 (655)
Q Consensus 208 ~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~--~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~ 285 (655)
....|+.+.-+ ..+...|++|..||.|.+..+..++.+... ++..+..+..............+...-.+-....
T Consensus 253 ~~~~v~~v~~~---~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (393)
T 4gq1_A 253 IASSLANVRWI---GSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMD 329 (393)
T ss_dssp CSSSCSEEEEE---TTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTT
T ss_pred ccccceeeeee---cCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCC
Confidence 33455553221 146778999999999987766554433221 1111111111110000001111111123334455
Q ss_pred eEEEEeeCCCcEEEEeeC-CeEEEEE
Q 035748 286 RYILSADASGKIRVFKEN-GMVHGTA 310 (655)
Q Consensus 286 RYVlsaDasGrV~VFren-Gtl~G~a 310 (655)
.|++++..+|.|++|.-. |......
T Consensus 330 ~~~~sgs~Dg~V~lwd~~~~~~~~~~ 355 (393)
T 4gq1_A 330 YFATAHSQHGLIQLINTYEKDSNSIP 355 (393)
T ss_dssp EEEEEETTTTEEEEEETTCTTCCEEE
T ss_pred EEEEEECCCCEEEEEECCCCcEEEEe
Confidence 688888899999999863 5444443
No 116
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=94.43 E-value=0.34 Score=45.45 Aligned_cols=109 Identities=14% Similarity=0.144 Sum_probs=69.5
Q ss_pred ceeEEeecccceEEEEccCCc---eEEEEecCCCCCeeEEEEeeeee--cceeEEEeeecCceEEEEEEEecCCCCCcch
Q 035748 179 SKYVAVGDDKGRVFVFLRNGD---VSVEFYTMSELPVTAMVSYVSVY--KNESVLVTGHENGVILIHKVYEKPNGEDWSS 253 (655)
Q Consensus 179 skY~AVGD~~Grv~Vfs~~GD---vl~E~~T~~~spVTAm~SYlsvr--RNeT~lVTGHadG~V~~hrV~Es~~gdD~~s 253 (655)
.+++|.|...|.|.+++..+. .......+-..+|++ +++. .- .+..+|+||..||.|.+..+.. .....|..
T Consensus 179 ~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~-v~~s-p~~~~~~~~las~s~D~~v~iw~~~~-~~~~~~~~ 255 (316)
T 3bg1_A 179 IKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRD-VAWA-PSIGLPTSTIASCSQDGRVFIWTCDD-ASSNTWSP 255 (316)
T ss_dssp CCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEE-EECC-CCSSCSCCEEEEEETTCEEEEEECSS-TTCCCCBC
T ss_pred cceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEE-EEec-CCCCCCCceEEEEcCCCeEEEEEccC-ccccchhh
Confidence 479999999999999976532 122222344678998 4553 31 1247999999999996654322 11111110
Q ss_pred hhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC
Q 035748 254 LVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN 303 (655)
Q Consensus 254 Ls~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren 303 (655)
+.+. . -..+|..+.++.-| ++++++..+|.|++|+.+
T Consensus 256 ------~~~~--~---~~~~v~~v~~sp~g--~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 256 ------KLLH--K---FNDVVWHVSWSITA--NILAVSGGDNKVTLWKES 292 (316)
T ss_dssp ------CEEE--E---CSSCEEEEEECTTT--CCEEEEESSSCEEEEEEC
T ss_pred ------hhhh--c---CCCcEEEEEEcCCC--CEEEEEcCCCeEEEEEEC
Confidence 1110 0 13478887776544 689999999999999975
No 117
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=94.11 E-value=2.3 Score=40.69 Aligned_cols=183 Identities=12% Similarity=0.112 Sum_probs=95.6
Q ss_pred ccceEEEEccC-CceEEEEecCCC-----CCeeEEEEeeeeecceeEEEeee-cCceEEEEEEEecCCCCCcchhhhhhc
Q 035748 187 DKGRVFVFLRN-GDVSVEFYTMSE-----LPVTAMVSYVSVYKNESVLVTGH-ENGVILIHKVYEKPNGEDWSSLVIENV 259 (655)
Q Consensus 187 ~~Grv~Vfs~~-GDvl~E~~T~~~-----spVTAm~SYlsvrRNeT~lVTGH-adG~V~~hrV~Es~~gdD~~sLs~e~~ 259 (655)
..|.|++++++ |.++-.+..+.. .|- .|. + .+..+.|+.. .++.|.+..+.. + .+ .
T Consensus 103 ~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~-~i~----~-~~~~lyv~~~~~~~~v~viD~~t---~------~~--~ 165 (328)
T 3dsm_A 103 WDYRIFIINPKTYEITGYIECPDMDMESGSTE-QMV----Q-YGKYVYVNCWSYQNRILKIDTET---D------KV--V 165 (328)
T ss_dssp SCSEEEEEETTTTEEEEEEECTTCCTTTCBCC-CEE----E-ETTEEEEEECTTCCEEEEEETTT---T------EE--E
T ss_pred CCCeEEEEECCCCeEEEEEEcCCccccCCCcc-eEE----E-ECCEEEEEcCCCCCEEEEEECCC---C------eE--E
Confidence 45778888766 555545554431 332 221 2 5778888887 477777653210 0 00 0
Q ss_pred cccccccCCCCCCceEEEEEeecCceeEEEEeeC----------CCcEEEEee-CCeEEEEEecc---CCCceEEEe-ee
Q 035748 260 GKYVATENGEEGLSVTLLEVHHIGRMRYILSADA----------SGKIRVFKE-NGMVHGTAAML---SSKPLVFLK-QR 324 (655)
Q Consensus 260 r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDa----------sGrV~VFre-nGtl~G~aa~~---~SrplaFlk-Qr 324 (655)
+.+ ..+ .....+.+-.-| ++.+++.. ++.|.++.. .+++-.+...+ ....++|-. .+
T Consensus 166 ~~i---~~g---~~p~~i~~~~dG--~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~ 237 (328)
T 3dsm_A 166 DEL---TIG---IQPTSLVMDKYN--KMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRD 237 (328)
T ss_dssp EEE---ECS---SCBCCCEECTTS--EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSC
T ss_pred EEE---EcC---CCccceEEcCCC--CEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCC
Confidence 111 000 011122222223 33334433 378888887 47776555222 134566654 56
Q ss_pred eeeeeecCccccccccCcccccccCCCCcccceeeeccc-------------cccceeeeeccCCcEEEEEEecCccc--
Q 035748 325 LLFLTECGAGSLDLRTMKLRETECEGLNNSLVRNYVFDA-------------TERSKAYGYTSEGDLIHVLLLGDVTN-- 389 (655)
Q Consensus 325 llfLTe~GaaslDLrtm~vr~~pCeGLN~S~i~syaFD~-------------~~rsKaYG~T~~G~Li~v~l~gD~~~-- 389 (655)
.+|.+...+...|+.+-++...+--...+..+...++|+ ....+.+=|+.+|+++.-+-.|+.++
T Consensus 238 ~lyv~~~~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i~~G~~P~~~ 317 (328)
T 3dsm_A 238 TLYWINNDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFYVGIIPGAF 317 (328)
T ss_dssp EEEEESSSEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEEEEEESEEEE
T ss_pred EEEEEccEEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEEEeccCcceE
Confidence 677666666666887755432111000123344444544 34566667777788888888888776
Q ss_pred -cceEE
Q 035748 390 -FKCRV 394 (655)
Q Consensus 390 -~~CrV 394 (655)
|+|+.
T Consensus 318 ~~~~~~ 323 (328)
T 3dsm_A 318 CWKLEH 323 (328)
T ss_dssp EEECCC
T ss_pred EEeccc
Confidence 66654
No 118
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=94.07 E-value=0.23 Score=47.63 Aligned_cols=103 Identities=13% Similarity=0.179 Sum_probs=68.5
Q ss_pred eeEEe--ecccceEEEEccC-Cc----------------eEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCce-EEE
Q 035748 180 KYVAV--GDDKGRVFVFLRN-GD----------------VSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGV-ILI 239 (655)
Q Consensus 180 kY~AV--GD~~Grv~Vfs~~-GD----------------vl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~-V~~ 239 (655)
.|+|+ |...|.|.+++.. |. .+..+ .+-..+|++| ++ ..+.++|+||..||. |.
T Consensus 148 ~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~-~~h~~~v~~~-~~---s~~g~~l~s~s~d~~~v~- 221 (355)
T 3vu4_A 148 GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLI-KAHTNPIKMV-RL---NRKSDMVATCSQDGTIIR- 221 (355)
T ss_dssp TEEEEEESSCTTCEEEEECCC------------------CCEEE-CCCSSCEEEE-EE---CTTSSEEEEEETTCSEEE-
T ss_pred cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEE-EccCCceEEE-EE---CCCCCEEEEEeCCCCEEE-
Confidence 56777 8999999999766 43 02222 3446789984 43 248899999999998 75
Q ss_pred EEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC
Q 035748 240 HKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN 303 (655)
Q Consensus 240 hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren 303 (655)
||.-..++ .++.| ..+....+|+.+.+..- .+|++++..+|.|+||+-.
T Consensus 222 --iwd~~~~~--------~~~~~---~~g~h~~~v~~~~~s~~--~~~l~s~s~d~~v~iw~~~ 270 (355)
T 3vu4_A 222 --VFKTEDGV--------LVREF---RRGLDRADVVDMKWSTD--GSKLAVVSDKWTLHVFEIF 270 (355)
T ss_dssp --EEETTTCC--------EEEEE---ECTTCCSCEEEEEECTT--SCEEEEEETTCEEEEEESS
T ss_pred --EEECCCCc--------EEEEE---EcCCCCCcEEEEEECCC--CCEEEEEECCCEEEEEEcc
Confidence 45422222 12233 11223467888877653 4689999999999999864
No 119
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=94.04 E-value=2.9 Score=43.74 Aligned_cols=90 Identities=19% Similarity=0.312 Sum_probs=60.1
Q ss_pred ccccceeeeeeecCCccceeeeccCCCCCCcceeEEeecc-cceEEEEccC-CceEEEEecCC----------CCCeeEE
Q 035748 148 WSERFQFVSAVKLESDPTCINILPFRDYEGHSKYVAVGDD-KGRVFVFLRN-GDVSVEFYTMS----------ELPVTAM 215 (655)
Q Consensus 148 WSerF~fvSAvklda~aTal~vLP~r~~~glskY~AVGD~-~Grv~Vfs~~-GDvl~E~~T~~----------~spVTAm 215 (655)
|.+..+.+.-++.+..+..+.+-|+.+.+| +|++|+.. .+.|.|++.+ +.++-.+.+.. +..|.++
T Consensus 208 ~~~t~~~~~~i~~g~~p~~va~sp~~~~dg--~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i 285 (543)
T 1nir_A 208 WAKEPTKVAEIKIGIEARSVESSKFKGYED--RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAI 285 (543)
T ss_dssp TSSSCEEEEEEECCSEEEEEEECCSTTCTT--TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEE
T ss_pred cCCCCcEEEEEecCCCcceEEeCCCcCCCC--CEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEE
Confidence 434556666666677777777666655455 56777774 6889999755 88877776532 3356664
Q ss_pred EEeeeeecceeEEEeeecCceEEEEEE
Q 035748 216 VSYVSVYKNESVLVTGHENGVILIHKV 242 (655)
Q Consensus 216 ~SYlsvrRNeT~lVTGHadG~V~~hrV 242 (655)
.. +. -+..++|+...+|.|.+-.+
T Consensus 286 ~~--s~-~~~~~~vs~~~~g~i~vvd~ 309 (543)
T 1nir_A 286 IA--SH-EHPEFIVNVKETGKVLLVNY 309 (543)
T ss_dssp EE--CS-SSSEEEEEETTTTEEEEEEC
T ss_pred EE--CC-CCCEEEEEECCCCeEEEEEe
Confidence 33 34 25678999999999987653
No 120
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=94.02 E-value=1.1 Score=46.44 Aligned_cols=121 Identities=18% Similarity=0.245 Sum_probs=80.4
Q ss_pred eecCCccceeeeccCCCCCCcceeEEeecccceEEEEccCCceEEEEe-cCCCCCeeEEEEeeeeecceeEEEeeecCce
Q 035748 158 VKLESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRNGDVSVEFY-TMSELPVTAMVSYVSVYKNESVLVTGHENGV 236 (655)
Q Consensus 158 vklda~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~GDvl~E~~-T~~~spVTAm~SYlsvrRNeT~lVTGHadG~ 236 (655)
++.+..++|+.+-|- .+|+|+|...|.|.+++.++..+.+.. ..-..+|++ +++ ..+..+|++|..||.
T Consensus 445 ~~~~~~v~~va~spd------g~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~-v~f---spdg~~las~s~d~~ 514 (611)
T 1nr0_A 445 VPISYNSSCVALSND------KQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITS-VAF---SNNGAFLVATDQSRK 514 (611)
T ss_dssp EECSSCEEEEEECTT------SCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEE-EEE---CTTSSEEEEEETTSC
T ss_pred eecCCCceEEEEeCC------CCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEE-EEE---CCCCCEEEEEcCCCC
Confidence 345566777776663 369999999999999987765443332 344678988 454 358899999999999
Q ss_pred EEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC
Q 035748 237 ILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN 303 (655)
Q Consensus 237 V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren 303 (655)
|.+..+.. .++ + .+.. ....-..+|+.+.+.. ..++++++..+|.|+||.-+
T Consensus 515 v~~w~~~~--~~~----~----~~~~---~~~~H~~~V~~v~fsp--dg~~lasgs~D~~v~lW~~~ 566 (611)
T 1nr0_A 515 VIPYSVAN--NFE----L----AHTN---SWTFHTAKVACVSWSP--DNVRLATGSLDNSVIVWNMN 566 (611)
T ss_dssp EEEEEGGG--TTE----E----SCCC---CCCCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETT
T ss_pred EEEEEcCC--CCc----e----eeee---eeeecccceeEEEECC--CCCEEEEEECCCcEEEEECC
Confidence 86543321 010 0 0100 0112345788877664 34689999999999999864
No 121
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=93.80 E-value=4.7 Score=38.31 Aligned_cols=141 Identities=11% Similarity=0.077 Sum_probs=79.4
Q ss_pred ceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEecCCCCCcchhhhh
Q 035748 179 SKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWSSLVIE 257 (655)
Q Consensus 179 skY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e 257 (655)
.++++.|...|.|++++.+ |..+..+. ....+|+.+ ++ +. .+..++++|..||.|.+..+. .+.
T Consensus 181 ~~~~~s~~~d~~v~~~d~~~~~~~~~~~-~~~~~~~~~-~~-~~-~~~~l~~~~~~~~~i~~~d~~---~~~-------- 245 (433)
T 3bws_A 181 NELWVSQMQANAVHVFDLKTLAYKATVD-LTGKWSKIL-LY-DP-IRDLVYCSNWISEDISVIDRK---TKL-------- 245 (433)
T ss_dssp TEEEEEEGGGTEEEEEETTTCCEEEEEE-CSSSSEEEE-EE-ET-TTTEEEEEETTTTEEEEEETT---TTE--------
T ss_pred CEEEEEECCCCEEEEEECCCceEEEEEc-CCCCCeeEE-EE-cC-CCCEEEEEecCCCcEEEEECC---CCc--------
Confidence 3688899999999999866 67766665 335677774 43 23 355677899999988665431 111
Q ss_pred hccccccccCCCCCCceEEEEEeecCceeEEEEee--------CCCcEEEEee-CCeEEEEEec-cCCCceEEEee-eee
Q 035748 258 NVGKYVATENGEEGLSVTLLEVHHIGRMRYILSAD--------ASGKIRVFKE-NGMVHGTAAM-LSSKPLVFLKQ-RLL 326 (655)
Q Consensus 258 ~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaD--------asGrV~VFre-nGtl~G~aa~-~~SrplaFlkQ-rll 326 (655)
..+.+ .. ...+..+-+..-| ++++++. .+|.|.+|.. +|.+...... ...+.++|-.. +.+
T Consensus 246 ~~~~~---~~---~~~~~~~~~~~~g--~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l 317 (433)
T 3bws_A 246 EIRKT---DK---IGLPRGLLLSKDG--KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKI 317 (433)
T ss_dssp EEEEC---CC---CSEEEEEEECTTS--SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEE
T ss_pred EEEEe---cC---CCCceEEEEcCCC--CEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEE
Confidence 11222 11 1235555554433 3555554 4789999986 4655443311 11234555443 356
Q ss_pred eeeecCcccc---ccccCc
Q 035748 327 FLTECGAGSL---DLRTMK 342 (655)
Q Consensus 327 fLTe~Gaasl---DLrtm~ 342 (655)
+++..+-+.+ |+.+.+
T Consensus 318 ~~~~~~~~~v~v~d~~~~~ 336 (433)
T 3bws_A 318 YVSDMCCSKIEVYDLKEKK 336 (433)
T ss_dssp EEEETTTTEEEEEETTTTE
T ss_pred EEEecCCCEEEEEECCCCc
Confidence 6664444333 555443
No 122
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=93.01 E-value=7 Score=37.91 Aligned_cols=99 Identities=16% Similarity=0.233 Sum_probs=66.1
Q ss_pred eeEEeecccceEEEEccC-CceEEEEec-CCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEecCCCCCcchhhhh
Q 035748 180 KYVAVGDDKGRVFVFLRN-GDVSVEFYT-MSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWSSLVIE 257 (655)
Q Consensus 180 kY~AVGD~~Grv~Vfs~~-GDvl~E~~T-~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e 257 (655)
..+|||- .+.|++.+.+ |.++-.+.. .-..+||+ +++. .+..+|+||..||.|.+..+. .+.
T Consensus 117 n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~s-v~fs---pdg~~lasgs~Dg~v~iWd~~---~~~-------- 180 (420)
T 4gga_A 117 NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISS-VAWI---KEGNYLAVGTSSAEVQLWDVQ---QQK-------- 180 (420)
T ss_dssp SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEE-EEEC---TTSSEEEEEETTSCEEEEETT---TTE--------
T ss_pred CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEE-EEEC---CCCCEEEEEECCCeEEEEEcC---CCc--------
Confidence 4799996 6899999876 887655553 33568999 5553 477899999999999765432 111
Q ss_pred hccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC
Q 035748 258 NVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN 303 (655)
Q Consensus 258 ~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren 303 (655)
-++.+. +-...|..+-.. ..+++++..+|.|.++...
T Consensus 181 ~~~~~~-----~h~~~v~~~s~~----~~~l~sgs~d~~i~~~d~~ 217 (420)
T 4gga_A 181 RLRNMT-----SHSARVGSLSWN----SYILSSGSRSGHIHHHDVR 217 (420)
T ss_dssp EEEEEC-----CCSSCEEEEEEE----TTEEEEEETTSEEEEEETT
T ss_pred EEEEEe-----CCCCceEEEeeC----CCEEEEEeCCCceeEeeec
Confidence 112221 123345554432 3588899999999999764
No 123
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=92.61 E-value=0.47 Score=42.57 Aligned_cols=75 Identities=9% Similarity=0.122 Sum_probs=53.1
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILI 239 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~ 239 (655)
..++.++...|..+ ..+.+.|+..|.|++++.. |..+.++.. -..+|++| ++ ..+..+|+||..||.|.+
T Consensus 240 ~~~v~~~~~~~~~~----~~~~~sg~~d~~i~iwd~~~~~~~~~l~g-H~~~V~~l-~~---spdg~~l~S~s~D~~v~i 310 (318)
T 4ggc_A 240 HSQVCSILWSPHYK----ELISGHGFAQNQLVIWKYPTMAKVAELKG-HTSRVLSL-TM---SPDGATVASAAADETLRL 310 (318)
T ss_dssp SSCEEEEEEETTTT----EEEEEECTTTCCEEEEETTTCCEEEEECC-CSSCEEEE-EE---CTTSSCEEEEETTTEEEE
T ss_pred eeeeeeeeeccccc----ceEEEEEcCCCEEEEEECCCCcEEEEEcC-CCCCEEEE-EE---cCCCCEEEEEecCCeEEE
Confidence 44455555555332 2345668899999999654 998887764 36799994 43 247889999999999987
Q ss_pred EEEEe
Q 035748 240 HKVYE 244 (655)
Q Consensus 240 hrV~E 244 (655)
=+|.|
T Consensus 311 Wd~~~ 315 (318)
T 4ggc_A 311 WRCFE 315 (318)
T ss_dssp ECCSC
T ss_pred EECCC
Confidence 66654
No 124
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=92.45 E-value=6.9 Score=37.35 Aligned_cols=218 Identities=14% Similarity=0.111 Sum_probs=107.9
Q ss_pred eEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEecCCCCCcchhhhhhc
Q 035748 181 YVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWSSLVIENV 259 (655)
Q Consensus 181 Y~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~~ 259 (655)
.|++....|.|.|++++ |.++-.+... .. ...|. +..+..+.|+...++.|.+... .+..+.
T Consensus 56 lyv~~~~~~~v~viD~~t~~~~~~i~~~-~~-p~~i~----~~~~g~lyv~~~~~~~v~~iD~---------~t~~~~-- 118 (328)
T 3dsm_A 56 GWIVVNNSHVIFAIDINTFKEVGRITGF-TS-PRYIH----FLSDEKAYVTQIWDYRIFIINP---------KTYEIT-- 118 (328)
T ss_dssp EEEEEGGGTEEEEEETTTCCEEEEEECC-SS-EEEEE----EEETTEEEEEEBSCSEEEEEET---------TTTEEE--
T ss_pred EEEEEcCCCEEEEEECcccEEEEEcCCC-CC-CcEEE----EeCCCeEEEEECCCCeEEEEEC---------CCCeEE--
Confidence 34444457899999887 8887777432 33 33322 2134578888756787765421 111111
Q ss_pred ccccccc-CCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee-CCeEEEEEeccCCC--ceEEEeeeeeeeeecC---
Q 035748 260 GKYVATE-NGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE-NGMVHGTAAMLSSK--PLVFLKQRLLFLTECG--- 332 (655)
Q Consensus 260 r~~~~~e-~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre-nGtl~G~aa~~~Sr--plaFlkQrllfLTe~G--- 332 (655)
+.+.-.. .+.... ...+.+ .++.=||.....++.|.|+.. .+++-.+. ..... -+++-+..-+|++..|
T Consensus 119 ~~i~~g~~~~~~~~-p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i-~~g~~p~~i~~~~dG~l~v~~~~~~~ 194 (328)
T 3dsm_A 119 GYIECPDMDMESGS-TEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDEL-TIGIQPTSLVMDKYNKMWTITDGGYE 194 (328)
T ss_dssp EEEECTTCCTTTCB-CCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEE-ECSSCBCCCEECTTSEEEEEBCCBCT
T ss_pred EEEEcCCccccCCC-cceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEE-EcCCCccceEEcCCCCEEEEECCCcc
Confidence 1111000 001112 223333 344435443224789999986 48887776 33333 3555454336666555
Q ss_pred ----------ccccccccCccccc-ccCCCCcccceeeeccccccceeeeeccCCcEEEEEEecCccccceEEeeecccc
Q 035748 333 ----------AGSLDLRTMKLRET-ECEGLNNSLVRNYVFDATERSKAYGYTSEGDLIHVLLLGDVTNFKCRVRSKRKFD 401 (655)
Q Consensus 333 ----------aaslDLrtm~vr~~-pCeGLN~S~i~syaFD~~~rsKaYG~T~~G~Li~v~l~gD~~~~~CrVRs~~k~d 401 (655)
+..+|..|.++... ... .+..+...+||+.. .++|-.+. -|+++ |...-+.. ...-..
T Consensus 195 ~~~~~~~~~~v~~id~~t~~v~~~~~~~--~g~~p~~la~~~d~-~~lyv~~~---~v~~~---d~~t~~~~--~~~~~~ 263 (328)
T 3dsm_A 195 GSPYGYEAPSLYRIDAETFTVEKQFKFK--LGDWPSEVQLNGTR-DTLYWINN---DIWRM---PVEADRVP--VRPFLE 263 (328)
T ss_dssp TCSSCBCCCEEEEEETTTTEEEEEEECC--TTCCCEEEEECTTS-CEEEEESS---SEEEE---ETTCSSCC--SSCSBC
T ss_pred CCccccCCceEEEEECCCCeEEEEEecC--CCCCceeEEEecCC-CEEEEEcc---EEEEE---ECCCCcee--eeeeec
Confidence 33447777665432 111 12345566666533 24444332 22222 21111110 000011
Q ss_pred --CCcc--cceeeeceeEEEEe------cceEEEEEeec
Q 035748 402 --MSEP--LAFQAIKGYLLVVC------EEKIFVYNVSA 430 (655)
Q Consensus 402 --~~~p--valqaIKGYlLvas------~~~V~VyNvTs 430 (655)
...| +++..-.|+|+|++ ...|.||+..-
T Consensus 264 ~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g 302 (328)
T 3dsm_A 264 FRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQG 302 (328)
T ss_dssp CCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTC
T ss_pred CCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCC
Confidence 2234 33433689999998 57899998764
No 125
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=92.17 E-value=2.1 Score=44.30 Aligned_cols=127 Identities=20% Similarity=0.167 Sum_probs=80.5
Q ss_pred ccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEE
Q 035748 163 DPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHK 241 (655)
Q Consensus 163 ~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hr 241 (655)
.|+++..-|... ..+|.|...|.|.+++.. +..+..+ .+-..+|++ +++- .+..+|+||..||.|.+..
T Consensus 149 ~v~~v~f~p~~~-----~~l~s~s~D~~v~lwd~~~~~~~~~l-~~H~~~V~~-v~fs---pdg~~las~s~D~~i~lwd 218 (611)
T 1nr0_A 149 AMNSVDFKPSRP-----FRIISGSDDNTVAIFEGPPFKFKSTF-GEHTKFVHS-VRYN---PDGSLFASTGGDGTIVLYN 218 (611)
T ss_dssp CEEEEEECSSSS-----CEEEEEETTSCEEEEETTTBEEEEEE-CCCSSCEEE-EEEC---TTSSEEEEEETTSCEEEEE
T ss_pred CceEEEECCCCC-----eEEEEEeCCCeEEEEECCCCeEeeee-ccccCceEE-EEEC---CCCCEEEEEECCCcEEEEE
Confidence 455666555321 258999999999999754 6555444 344678988 4542 4788999999999986554
Q ss_pred EEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC-CeEEEEE
Q 035748 242 VYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN-GMVHGTA 310 (655)
Q Consensus 242 V~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren-Gtl~G~a 310 (655)
+ ..|+-...+.-. .. ...+-..+|+.+.+.. ..++++++..+|.|+||.-. |....+.
T Consensus 219 ~---~~g~~~~~~~~~---~~---~~~~h~~~V~~v~~sp--dg~~l~s~s~D~~v~lWd~~~~~~~~~~ 277 (611)
T 1nr0_A 219 G---VDGTKTGVFEDD---SL---KNVAHSGSVFGLTWSP--DGTKIASASADKTIKIWNVATLKVEKTI 277 (611)
T ss_dssp T---TTCCEEEECBCT---TS---SSCSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred C---CCCcEeeeeccc---cc---cccccCCCEEEEEECC--CCCEEEEEeCCCeEEEEeCCCCceeeee
Confidence 3 222221111000 00 0112334788887765 44689999999999999964 6665555
No 126
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=92.01 E-value=8.5 Score=36.50 Aligned_cols=50 Identities=8% Similarity=0.143 Sum_probs=36.5
Q ss_pred cceeEEeecccceEEEEcc-CCceEEEEecCCCCCeeEEEEeeeeecceeEEEee
Q 035748 178 HSKYVAVGDDKGRVFVFLR-NGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTG 231 (655)
Q Consensus 178 lskY~AVGD~~Grv~Vfs~-~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTG 231 (655)
.-+++++|...++|+++++ +|.++-++.+.....+..+ + +..|-.++|++
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~-~---~~pdG~ilvs~ 54 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSV-A---ATKAGEILFSY 54 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEE-E---ECTTSCEEEEC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCe-E---ECCCCCEEEeC
Confidence 3478999999999999999 7999999987643344442 2 22477788854
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=91.81 E-value=14 Score=38.64 Aligned_cols=241 Identities=11% Similarity=0.090 Sum_probs=121.3
Q ss_pred eeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEE--------ecCCCCC
Q 035748 180 KYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVY--------EKPNGED 250 (655)
Q Consensus 180 kY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~--------Es~~gdD 250 (655)
++++++-..|.|.|++.+ |.++-.+.++.. +.. ++ +..+...|+++..||.|.+..++ +-+.|.+
T Consensus 150 ~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~-v~---~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~ 223 (543)
T 1nir_A 150 LFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHI-SR---MSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIE 223 (543)
T ss_dssp EEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEE-EE---ECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSE
T ss_pred EEEEEEcCCCeEEEEECCCceEEEEEecCcc--cce-EE---ECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCC
Confidence 678888888999999766 998888776643 443 33 23466777777788999988872 1223444
Q ss_pred cchhhhhh----ccc--ccccc--------CCCCCCceEEEEE---------eecC-----------ceeEEEEeeCCCc
Q 035748 251 WSSLVIEN----VGK--YVATE--------NGEEGLSVTLLEV---------HHIG-----------RMRYILSADASGK 296 (655)
Q Consensus 251 ~~sLs~e~----~r~--~~~~e--------~~~d~~pVt~LE~---------hrvG-----------r~RYVlsaDasGr 296 (655)
+..+++.- .++ |+..+ ......++..+.+ ||.+ +.+++++...+|+
T Consensus 224 p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~ 303 (543)
T 1nir_A 224 ARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGK 303 (543)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred cceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCe
Confidence 44444332 222 22111 1123333333332 1111 2345566667888
Q ss_pred EEEEeeC-C-eEE-EEE-eccCCCceEEEe-eeeeeeeec---CccccccccCcccc-cccCCCCcc-cceeeecccccc
Q 035748 297 IRVFKEN-G-MVH-GTA-AMLSSKPLVFLK-QRLLFLTEC---GAGSLDLRTMKLRE-TECEGLNNS-LVRNYVFDATER 366 (655)
Q Consensus 297 V~VFren-G-tl~-G~a-a~~~SrplaFlk-QrllfLTe~---GaaslDLrtm~vr~-~pCeGLN~S-~i~syaFD~~~r 366 (655)
|.++.-. + .+. .+. .-..-+-++|=. .+.++.+.. -+...|+.+-++.. .++....|. ...+ .+++. -
T Consensus 304 i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~-~~~p~-~ 381 (543)
T 1nir_A 304 VLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGAN-FVHPK-Y 381 (543)
T ss_dssp EEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEE-EEETT-T
T ss_pred EEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcc-cCCCC-C
Confidence 8888753 1 111 011 001123345443 344444433 23445777655332 222222221 1111 13332 2
Q ss_pred ceeeeeccCC-cEEEEEEecCccc----cceEEeeeccccCCcc--cceeeeceeEEEEe--------cceEEEEEeec
Q 035748 367 SKAYGYTSEG-DLIHVLLLGDVTN----FKCRVRSKRKFDMSEP--LAFQAIKGYLLVVC--------EEKIFVYNVSA 430 (655)
Q Consensus 367 sKaYG~T~~G-~Li~v~l~gD~~~----~~CrVRs~~k~d~~~p--valqaIKGYlLvas--------~~~V~VyNvTs 430 (655)
++.|.-..-| +-|.+|=.-...+ .+|.-.-... ...+ ++++-=.-||++.+ .+.|.||++.+
T Consensus 382 g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~--g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~ 458 (543)
T 1nir_A 382 GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ--GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKN 458 (543)
T ss_dssp EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS--CSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTC
T ss_pred ccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcC--CCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCC
Confidence 3566554433 4566554333222 6664333222 1222 33444446999987 35899999987
No 128
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=91.45 E-value=9.7 Score=36.04 Aligned_cols=136 Identities=13% Similarity=0.100 Sum_probs=73.4
Q ss_pred ceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEecCCCCCcchhhhhhccccccccC
Q 035748 189 GRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWSSLVIENVGKYVATEN 267 (655)
Q Consensus 189 Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~ 267 (655)
|.|++++++ |.++.......-.....| + +-.+..++||...++.|... .++|..-.-..+...... ...
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gi-a---~d~~g~l~v~d~~~~~v~~~----~~~g~~~~~~~~~~~~~~--g~~ 138 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKNLFYLPHGL-S---IDTDGNYWVTDVALHQVFKL----DPHSKEGPLLILGRSMQP--GSD 138 (329)
T ss_dssp CCEEEECTTTCCEEEEECTTTCSSEEEE-E---ECTTSCEEEEETTTTEEEEE----CTTCSSCCSEEESBTTBC--CCS
T ss_pred CcEEEEECCCCeEEeccCCCccCCceEE-E---ECCCCCEEEEECCCCEEEEE----eCCCCeEEEEEecccCCC--CCC
Confidence 589999986 998765543332334442 2 33566799999999876543 234432000000000000 000
Q ss_pred CCCCCceEEEEEeecCceeEEEEee--CCCcEEEEeeCCeEEEEEeccC------------CCceEEEee-eeeeeeecC
Q 035748 268 GEEGLSVTLLEVHHIGRMRYILSAD--ASGKIRVFKENGMVHGTAAMLS------------SKPLVFLKQ-RLLFLTECG 332 (655)
Q Consensus 268 ~~d~~pVt~LE~hrvGr~RYVlsaD--asGrV~VFrenGtl~G~aa~~~------------SrplaFlkQ-rllfLTe~G 332 (655)
...-.....+-+..-. ..+.++| .+++|.+|..+|.+...+.... -.-|+|-.. .-+|.+.++
T Consensus 139 ~~~~~~P~~ia~~~~~--g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~ 216 (329)
T 3fvz_A 139 QNHFCQPTDVAVEPST--GAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE 216 (329)
T ss_dssp TTCCSSEEEEEECTTT--CCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT
T ss_pred ccccCCCcEEEEeCCC--CeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC
Confidence 1111123444443322 3456667 4899999999998866662222 124665555 778888877
Q ss_pred cccc
Q 035748 333 AGSL 336 (655)
Q Consensus 333 aasl 336 (655)
...+
T Consensus 217 ~~~I 220 (329)
T 3fvz_A 217 NGRI 220 (329)
T ss_dssp TTEE
T ss_pred CCEE
Confidence 6543
No 129
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=90.47 E-value=11 Score=34.97 Aligned_cols=230 Identities=16% Similarity=0.168 Sum_probs=101.5
Q ss_pred cceeEEeecc----cceEEEE--ccC-CceEE-EEecCCCCCeeEEEEeeeeecceeEEEeeec--CceEEEEEEEecCC
Q 035748 178 HSKYVAVGDD----KGRVFVF--LRN-GDVSV-EFYTMSELPVTAMVSYVSVYKNESVLVTGHE--NGVILIHKVYEKPN 247 (655)
Q Consensus 178 lskY~AVGD~----~Grv~Vf--s~~-GDvl~-E~~T~~~spVTAm~SYlsvrRNeT~lVTGHa--dG~V~~hrV~Es~~ 247 (655)
|.++++||+- .+.++++ ..+ |.+.. ........| +. +++ + .+..+++++.. ||.|.+..+..
T Consensus 1 ~~~~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p-~~-~a~-s--pdg~l~~~~~~~~~~~v~~~~~~~--- 72 (347)
T 3hfq_A 1 MQERILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNP-TY-LAL-S--AKDCLYSVDKEDDEGGIAAWQIDG--- 72 (347)
T ss_dssp CEEEEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCC-CC-EEE-C--TTCEEEEEEEETTEEEEEEEEEET---
T ss_pred CCcEEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCc-ce-EEE-c--cCCeEEEEEecCCCceEEEEEecC---
Confidence 4577888842 2345555 543 66433 222333333 22 332 2 35556666654 78888777721
Q ss_pred CCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEee-CCCcEEEEeeC--CeEE--EEEeccCCCc-----
Q 035748 248 GEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSAD-ASGKIRVFKEN--GMVH--GTAAMLSSKP----- 317 (655)
Q Consensus 248 gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaD-asGrV~VFren--Gtl~--G~aa~~~Srp----- 317 (655)
| .+..+ ..+. ..+..+..+.+..=| +++++++ .+|.|.||+-+ |++- .........|
T Consensus 73 g-~~~~~-----~~~~-----~~~~~p~~~a~spdg--~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~ 139 (347)
T 3hfq_A 73 Q-TAHKL-----NTVV-----APGTPPAYVAVDEAR--QLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQD 139 (347)
T ss_dssp T-EEEEE-----EEEE-----EESCCCSEEEEETTT--TEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCS
T ss_pred C-cEEEe-----eeee-----cCCCCCEEEEECCCC--CEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCcccc
Confidence 1 11000 1110 011223344444333 3555555 67889999863 4432 1110111111
Q ss_pred ------eEEEe-eeeeeeeecCcccc---ccc-cCcccc-cccCCCCcccceeeeccccccceeeeeccCCcEEEEEEec
Q 035748 318 ------LVFLK-QRLLFLTECGAGSL---DLR-TMKLRE-TECEGLNNSLVRNYVFDATERSKAYGYTSEGDLIHVLLLG 385 (655)
Q Consensus 318 ------laFlk-QrllfLTe~Gaasl---DLr-tm~vr~-~pCeGLN~S~i~syaFD~~~rsKaYG~T~~G~Li~v~l~g 385 (655)
++|-. .+ ++.+..+...+ |+. +-+... .....-.++.+...+|++..+ ++|-.+..+.-|.++-.-
T Consensus 140 ~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~-~l~v~~~~~~~v~v~~~~ 217 (347)
T 3hfq_A 140 GSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQ-YAFLAGELSSQIASLKYD 217 (347)
T ss_dssp SCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSS-EEEEEETTTTEEEEEEEE
T ss_pred CCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCC-EEEEEeCCCCEEEEEEec
Confidence 45443 24 66666654433 444 111110 011112344556677777653 355555555555555332
Q ss_pred C-ccccceEEeeecccc-C---Ccc--cceeeeceeEEEEec--ceEEEEEeec
Q 035748 386 D-VTNFKCRVRSKRKFD-M---SEP--LAFQAIKGYLLVVCE--EKIFVYNVSA 430 (655)
Q Consensus 386 D-~~~~~CrVRs~~k~d-~---~~p--valqaIKGYlLvas~--~~V~VyNvTs 430 (655)
. ...+.+......... . ..+ +++..=--||+|++. ..|.||++..
T Consensus 218 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 218 TQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp TTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred CCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 1 222222111111110 0 111 222222237878765 6799999864
No 130
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=90.37 E-value=13 Score=35.56 Aligned_cols=61 Identities=8% Similarity=0.026 Sum_probs=32.9
Q ss_pred cceeEEeeccc--ceEEEEc--c-CCceEEE--EecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEE
Q 035748 178 HSKYVAVGDDK--GRVFVFL--R-NGDVSVE--FYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVY 243 (655)
Q Consensus 178 lskY~AVGD~~--Grv~Vfs--~-~GDvl~E--~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~ 243 (655)
|..++.||.-. |.||+|. + .|.+-.- ..+....+++. ++ +..+...|+++..+ .|.+.++-
T Consensus 1 ~~~~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~-~a---~spdg~~l~~~~~~-~v~~~~~~ 68 (365)
T 1jof_A 1 PLHHLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISW-MT---FDHERKNIYGAAMK-KWSSFAVK 68 (365)
T ss_dssp CEEEEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSE-EE---ECTTSSEEEEEEBT-EEEEEEEE
T ss_pred CcEEEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcE-EE---ECCCCCEEEEEccc-eEEEEEEC
Confidence 34677777643 5688875 3 3664321 11222234444 22 33455666666666 77777664
No 131
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=89.84 E-value=3.2 Score=45.95 Aligned_cols=141 Identities=15% Similarity=0.113 Sum_probs=86.4
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccCCceEEEEecCCCC-----CeeEEEEeeeeecceeEEEeeecCc
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRNGDVSVEFYTMSEL-----PVTAMVSYVSVYKNESVLVTGHENG 235 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~GDvl~E~~T~~~s-----pVTAm~SYlsvrRNeT~lVTGHadG 235 (655)
+..|++++.=| -.+++|+++..|.|.++..+| +++..+ ... .|.+ +++ |+ +..+|++|.+||
T Consensus 85 ~~~V~~vawSP------dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~s-vaf-SP--DG~~LAsgs~DG 151 (588)
T 2j04_A 85 VCYPRVCKPSP------IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHC-FEW-NP--IESSIVVGNEDG 151 (588)
T ss_dssp SCCEEEEEECS------SSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEE-EEE-CS--SSSCEEEEETTS
T ss_pred CCcEEEEEECC------CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEE-EEE-cC--CCCEEEEEcCCC
Confidence 57788888877 346899999999999998777 444333 344 4886 554 44 889999999999
Q ss_pred eEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeCCeE----EEEE-
Q 035748 236 VILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKENGMV----HGTA- 310 (655)
Q Consensus 236 ~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFrenGtl----~G~a- 310 (655)
.|.+..+....-. +. ..-.++.+.....+ ....|.++-.+ ..+ ++++-.++.|++|..++.. ..+.
T Consensus 152 tVkIWd~~~~~l~-~~---~~i~l~ti~~~~~g-h~~~V~sVawS-Pdg---Laass~D~tVrlWd~~~~~~~~~~~tL~ 222 (588)
T 2j04_A 152 ELQFFSIRKNSEN-TP---EFYFESSIRLSDAG-SKDWVTHIVWY-EDV---LVAALSNNSVFSMTVSASSHQPVSRMIQ 222 (588)
T ss_dssp EEEEEECCCCTTT-CC---CCEEEEEEECSCTT-CCCCEEEEEEE-TTE---EEEEETTCCEEEECCCSSSSCCCEEEEE
T ss_pred EEEEEECCCCccc-cc---cceeeeeeeccccc-ccccEEEEEEc-CCc---EEEEeCCCeEEEEECCCCccccceeeec
Confidence 9987665431000 00 00001122111122 33579998555 333 6777779999999986533 2222
Q ss_pred --eccCCCceEEEee
Q 035748 311 --AMLSSKPLVFLKQ 323 (655)
Q Consensus 311 --a~~~SrplaFlkQ 323 (655)
......-++|..|
T Consensus 223 ~~h~~~V~svaFsg~ 237 (588)
T 2j04_A 223 NASRRKITDLKIVDY 237 (588)
T ss_dssp CCCSSCCCCEEEETT
T ss_pred ccccCcEEEEEEECC
Confidence 1233456777643
No 132
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=88.38 E-value=8.1 Score=37.34 Aligned_cols=138 Identities=9% Similarity=0.089 Sum_probs=82.0
Q ss_pred ceeeeeeecCCccceeeeccCCCCCCcceeEEeecccceEEEEccCCceEEEEe-cCCCCCeeEEEEeeeeecceeEEEe
Q 035748 152 FQFVSAVKLESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRNGDVSVEFY-TMSELPVTAMVSYVSVYKNESVLVT 230 (655)
Q Consensus 152 F~fvSAvklda~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~GDvl~E~~-T~~~spVTAm~SYlsvrRNeT~lVT 230 (655)
.+.+.-++-..+|+++..-| +| +|+|.|.+.+-+.+-..+|..+.+.. ..-..+|++ +++. .+...+++
T Consensus 167 ~~~~~~~~~~~~V~~v~fsp----dg--~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-v~fs---pdg~~l~~ 236 (365)
T 4h5i_A 167 LTEKFEIETRGEVKDLHFST----DG--KVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSK-INFI---ADDTVLIA 236 (365)
T ss_dssp TEEEEEEECSSCCCEEEECT----TS--SEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEE-EEEE---ETTEEEEE
T ss_pred CcEEEEeCCCCceEEEEEcc----CC--ceEEeccceeEEEEEeccCcceeeeecCCCCCCEEE-EEEc---CCCCEEEE
Confidence 34444456677888888876 22 68888876665555567788776544 344567777 4442 47777888
Q ss_pred eecCceE-EEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee-CCeEEE
Q 035748 231 GHENGVI-LIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE-NGMVHG 308 (655)
Q Consensus 231 GHadG~V-~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre-nGtl~G 308 (655)
+..||.. ..-++|....+.. .....+.+ .....+|+.+-+.. ..+||+++..+|.|+||.- +|....
T Consensus 237 ~s~d~~~~~~i~~~~~~~~~~----~~~~~~~~-----~~~~~~V~~~~~Sp--dg~~lasgs~D~~V~iwd~~~~~~~~ 305 (365)
T 4h5i_A 237 ASLKKGKGIVLTKISIKSGNT----SVLRSKQV-----TNRFKGITSMDVDM--KGELAVLASNDNSIALVKLKDLSMSK 305 (365)
T ss_dssp EEESSSCCEEEEEEEEETTEE----EEEEEEEE-----ESSCSCEEEEEECT--TSCEEEEEETTSCEEEEETTTTEEEE
T ss_pred EecCCcceeEEeeccccccee----cceeeeee-----cCCCCCeEeEEECC--CCCceEEEcCCCEEEEEECCCCcEEE
Confidence 8777642 2334443111111 00001112 12345688877765 3468999999999999985 455444
Q ss_pred EE
Q 035748 309 TA 310 (655)
Q Consensus 309 ~a 310 (655)
++
T Consensus 306 ~~ 307 (365)
T 4h5i_A 306 IF 307 (365)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 133
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=87.86 E-value=14 Score=32.70 Aligned_cols=156 Identities=12% Similarity=0.075 Sum_probs=77.1
Q ss_pred EeecccceEEEEccCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEecCCCCCcchhhhhhcccc
Q 035748 183 AVGDDKGRVFVFLRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWSSLVIENVGKY 262 (655)
Q Consensus 183 AVGD~~Grv~Vfs~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~~r~~ 262 (655)
.|+|..|+|++++++|.....+.......++.|. +-.+..+.|+...+|.|... . .+.. .... .
T Consensus 81 ~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~~i~----~~~~g~l~v~~~~~~~i~~~---~--~~~~-~~~~------~ 144 (270)
T 1rwi_B 81 YVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLA----VDTQGAVYVADRGNNRVVKL---A--AGSK-TQTV------L 144 (270)
T ss_dssp EEEETTTEEEEECTTCSCCEECCCCSCSSEEEEE----ECTTCCEEEEEGGGTEEEEE---C--TTCC-SCEE------C
T ss_pred EEEcCCCEEEEEeCCCceEeeeecCCcCCCcceE----ECCCCCEEEEECCCCEEEEE---E--CCCc-eeEe------e
Confidence 3444488999999998866555433324445532 22356688888888877654 1 1111 0000 0
Q ss_pred ccccCCCCCCceEEEEEeecCceeEEEEee-CCCcEEEEeeCCeEEEEEeccC-CC--ceEEEeeeeeeeeecCcc---c
Q 035748 263 VATENGEEGLSVTLLEVHHIGRMRYILSAD-ASGKIRVFKENGMVHGTAAMLS-SK--PLVFLKQRLLFLTECGAG---S 335 (655)
Q Consensus 263 ~~~e~~~d~~pVt~LE~hrvGr~RYVlsaD-asGrV~VFrenGtl~G~aa~~~-Sr--plaFlkQrllfLTe~Gaa---s 335 (655)
. ......+..+.+..-| + +.++| .+++|.+|..++...-...... .. .|++-++.-+|++..+.. .
T Consensus 145 ---~-~~~~~~p~~i~~~~~g--~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~ 217 (270)
T 1rwi_B 145 ---P-FTGLNDPDGVAVDNSG--N-VYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVK 217 (270)
T ss_dssp ---C-CCSCCSCCCEEECTTC--C-EEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEE
T ss_pred ---c-cccCCCceeEEEeCCC--C-EEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEE
Confidence 0 0011122334344334 2 33344 4688999988754322220111 22 344445557777775443 3
Q ss_pred cccccCcccccccCCCCcccceeeeccc
Q 035748 336 LDLRTMKLRETECEGLNNSLVRNYVFDA 363 (655)
Q Consensus 336 lDLrtm~vr~~pCeGLN~S~i~syaFD~ 363 (655)
.|+.+......+..++ ..+...+||+
T Consensus 218 ~~~~~~~~~~~~~~~~--~~p~~i~~~~ 243 (270)
T 1rwi_B 218 LLAGSTTSTVLPFTGL--NTPLAVAVDS 243 (270)
T ss_dssp ECTTCSCCEECCCCSC--SCEEEEEECT
T ss_pred EcCCCCcceeeccCCC--CCceeEEECC
Confidence 4665544444333333 2344555554
No 134
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=87.27 E-value=16 Score=32.83 Aligned_cols=127 Identities=17% Similarity=0.181 Sum_probs=68.4
Q ss_pred eeeeeeecCCccceeeeccCCCCCCcceeEEeeccc-ceEEEEccC---CceE--EEEecCCCCCeeEEEEeeeeeccee
Q 035748 153 QFVSAVKLESDPTCINILPFRDYEGHSKYVAVGDDK-GRVFVFLRN---GDVS--VEFYTMSELPVTAMVSYVSVYKNES 226 (655)
Q Consensus 153 ~fvSAvklda~aTal~vLP~r~~~glskY~AVGD~~-Grv~Vfs~~---GDvl--~E~~T~~~spVTAm~SYlsvrRNeT 226 (655)
+.+.-...+..+.++.+-|- .+|+++++.. |.|.++..+ |.+. ..+... . .++. +++ +. .+..
T Consensus 29 ~~~~~~~~~~~~~~~~~spd------g~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~-~~~~-~~~-s~-dg~~ 97 (343)
T 1ri6_A 29 TLTQVVDVPGQVQPMVVSPD------KRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-G-SLTH-IST-DH-QGQF 97 (343)
T ss_dssp EEEEEEECSSCCCCEEECTT------SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-S-CCSE-EEE-CT-TSSE
T ss_pred EEeeeEecCCCCceEEECCC------CCEEEEeecCCCeEEEEEecCCCCceeeccccccC-C-CCcE-EEE-cC-CCCE
Confidence 33434445667777777663 2456666665 999997654 5533 233332 2 4554 332 23 3556
Q ss_pred EEEeeecCceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEee-CCCcEEEEeeC--
Q 035748 227 VLVTGHENGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSAD-ASGKIRVFKEN-- 303 (655)
Q Consensus 227 ~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaD-asGrV~VFren-- 303 (655)
+++++..+|.|.+..+. ++... +..+.+ . ....+..+.+..- .+++++++ .+|+|.+|+-+
T Consensus 98 l~~~~~~~~~i~~~d~~---~~~~~-----~~~~~~---~---~~~~~~~~~~s~d--g~~l~~~~~~~~~v~~~d~~~~ 161 (343)
T 1ri6_A 98 VFVGSYNAGNVSVTRLE---DGLPV-----GVVDVV---E---GLDGCHSANISPD--NRTLWVPALKQDRICLFTVSDD 161 (343)
T ss_dssp EEEEETTTTEEEEEEEE---TTEEE-----EEEEEE---C---CCTTBCCCEECTT--SSEEEEEEGGGTEEEEEEECTT
T ss_pred EEEEecCCCeEEEEECC---CCccc-----cccccc---c---CCCCceEEEECCC--CCEEEEecCCCCEEEEEEecCC
Confidence 77888889999888773 11110 001111 0 1112333333322 34666666 78999998864
Q ss_pred CeE
Q 035748 304 GMV 306 (655)
Q Consensus 304 Gtl 306 (655)
|.+
T Consensus 162 ~~~ 164 (343)
T 1ri6_A 162 GHL 164 (343)
T ss_dssp SCE
T ss_pred Cce
Confidence 544
No 135
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=86.52 E-value=18 Score=32.56 Aligned_cols=229 Identities=16% Similarity=0.179 Sum_probs=105.0
Q ss_pred eeEEee-cccceEEEEccC--CceEEEEecCCCCCeeEEEEeeeeeccee-EEEeeecCceEEEEEEEecCCCCCcchhh
Q 035748 180 KYVAVG-DDKGRVFVFLRN--GDVSVEFYTMSELPVTAMVSYVSVYKNES-VLVTGHENGVILIHKVYEKPNGEDWSSLV 255 (655)
Q Consensus 180 kY~AVG-D~~Grv~Vfs~~--GDvl~E~~T~~~spVTAm~SYlsvrRNeT-~lVTGHadG~V~~hrV~Es~~gdD~~sLs 255 (655)
+|+.|. ...|.|++++.+ |....-........++. +++ + .+.. +++++..+|.|.+..+-. ....+.
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-s--pdg~~l~~~~~~~~~v~~~~~~~--~~~~~~--- 75 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQP-MVV-S--PDKRYLYVGVRPEFRVLAYRIAP--DDGALT--- 75 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCC-EEE-C--TTSSEEEEEETTTTEEEEEEECT--TTCCEE---
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCce-EEE-C--CCCCEEEEeecCCCeEEEEEecC--CCCcee---
Confidence 445555 668999999765 65433222333445555 332 2 3444 555555559988777631 111111
Q ss_pred hhhccccccccCCCCCCceEEEEEeecCceeEEEEee-CCCcEEEEee-CC---eEEEEEeccC--CCceEEEe-eeeee
Q 035748 256 IENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSAD-ASGKIRVFKE-NG---MVHGTAAMLS--SKPLVFLK-QRLLF 327 (655)
Q Consensus 256 ~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaD-asGrV~VFre-nG---tl~G~aa~~~--SrplaFlk-Qrllf 327 (655)
.+..+ ... + .+..+.+..-| +++++++ .+|.|.+|.- +| ...... ... ...++|-. .+.++
T Consensus 76 --~~~~~---~~~--~-~~~~~~~s~dg--~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~ 144 (343)
T 1ri6_A 76 --FAAES---ALP--G-SLTHISTDHQG--QFVFVGSYNAGNVSVTRLEDGLPVGVVDVV-EGLDGCHSANISPDNRTLW 144 (343)
T ss_dssp --EEEEE---ECS--S-CCSEEEECTTS--SEEEEEETTTTEEEEEEEETTEEEEEEEEE-CCCTTBCCCEECTTSSEEE
T ss_pred --ecccc---ccC--C-CCcEEEEcCCC--CEEEEEecCCCeEEEEECCCCccccccccc-cCCCCceEEEECCCCCEEE
Confidence 01111 111 1 34455444333 4555544 4888999987 33 233333 111 22345544 24556
Q ss_pred eeecCcccc---cccc-Cccccc---ccCCCCcccceeeeccccccceeeeeccCCcEEEEEEec-CccccceEEeeecc
Q 035748 328 LTECGAGSL---DLRT-MKLRET---ECEGLNNSLVRNYVFDATERSKAYGYTSEGDLIHVLLLG-DVTNFKCRVRSKRK 399 (655)
Q Consensus 328 LTe~Gaasl---DLrt-m~vr~~---pCeGLN~S~i~syaFD~~~rsKaYG~T~~G~Li~v~l~g-D~~~~~CrVRs~~k 399 (655)
.+..+-+.+ |+.+ -++... ....-.+..+...+|++..+ .+|-......-|.++-.- +...+.+.-.....
T Consensus 145 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~-~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~ 223 (343)
T 1ri6_A 145 VPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQ-YAYCVNELNSSVDVWELKDPHGNIECVQTLDMM 223 (343)
T ss_dssp EEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSS-EEEEEETTTTEEEEEESSCTTSCCEEEEEEECS
T ss_pred EecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCC-EEEEEeCCCCEEEEEEecCCCCcEEEEeecccc
Confidence 655333332 5554 222111 11112234566677777654 344444333344444331 11222221111110
Q ss_pred c-cCC---cc--cceeeeceeEEEEec--ceEEEEEee
Q 035748 400 F-DMS---EP--LAFQAIKGYLLVVCE--EKIFVYNVS 429 (655)
Q Consensus 400 ~-d~~---~p--valqaIKGYlLvas~--~~V~VyNvT 429 (655)
. ... .+ +++..=..||++++. ..|.+|++.
T Consensus 224 ~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 224 PENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp CTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence 0 111 11 333222348888774 679999987
No 136
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=85.73 E-value=21 Score=32.53 Aligned_cols=244 Identities=15% Similarity=0.130 Sum_probs=121.3
Q ss_pred ecCCccceeeeccCCCCCCcceeEEeec-----ccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeee
Q 035748 159 KLESDPTCINILPFRDYEGHSKYVAVGD-----DKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGH 232 (655)
Q Consensus 159 klda~aTal~vLP~r~~~glskY~AVGD-----~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGH 232 (655)
.++..+.++.+-| +|-.-|++..+ ..|.|++++.+ |.++..+... ..| .. +++ +. .+..++|++.
T Consensus 38 ~~~~~~~~~~~s~----dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~-~~-~~~-s~-dg~~l~v~~~ 108 (353)
T 3vgz_A 38 AVGKGAYEMAYSQ----QENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKP-FG-ATI-NN-TTQTLWFGNT 108 (353)
T ss_dssp EEESSEEEEEEET----TTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCC-CS-EEE-ET-TTTEEEEEET
T ss_pred hhccCccceEECC----CCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCc-ce-EEE-CC-CCCEEEEEec
Confidence 3445555555555 33233444433 26789999876 8877777664 233 33 222 22 3456888888
Q ss_pred cCceEEEEEEEecCCCCCcchhhhhhccccccc--cCCCCCCc--eEEEEEeecCceeEEEEeeCCCcEEEEee-CCeEE
Q 035748 233 ENGVILIHKVYEKPNGEDWSSLVIENVGKYVAT--ENGEEGLS--VTLLEVHHIGRMRYILSADASGKIRVFKE-NGMVH 307 (655)
Q Consensus 233 adG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~--e~~~d~~p--Vt~LE~hrvGr~RYVlsaDasGrV~VFre-nGtl~ 307 (655)
.+|.|.+..+ ..++- .+.+... ...+...+ +..+.+..-|+.=|+.....+|+|.+|.. .+.+-
T Consensus 109 ~~~~v~~~d~---~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~ 177 (353)
T 3vgz_A 109 VNSAVTAIDA---KTGEV--------KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLK 177 (353)
T ss_dssp TTTEEEEEET---TTCCE--------EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEE
T ss_pred CCCEEEEEeC---CCCee--------EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceE
Confidence 8897765432 11211 1111100 01111222 34455554454334443345889999987 47777
Q ss_pred EEEeccC--CCceEEEe-eeeeeeeecC--ccccccccCcccccccCCCC--cccceeeeccccccceeeeeccCCcEEE
Q 035748 308 GTAAMLS--SKPLVFLK-QRLLFLTECG--AGSLDLRTMKLRETECEGLN--NSLVRNYVFDATERSKAYGYTSEGDLIH 380 (655)
Q Consensus 308 G~aa~~~--SrplaFlk-QrllfLTe~G--aaslDLrtm~vr~~pCeGLN--~S~i~syaFD~~~rsKaYG~T~~G~Li~ 380 (655)
....... ...++|-. .+.++.+... ....|+.+.++...-..+-+ ...+...+|++..+ +.|-...++.-|+
T Consensus 178 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~v~ 256 (353)
T 3vgz_A 178 TAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQ-RAFITDSKAAEVL 256 (353)
T ss_dssp EEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTT-EEEEEESSSSEEE
T ss_pred EEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCC-EEEEEeCCCCEEE
Confidence 6662122 24566654 2445555432 22347776654433222111 12344456666544 3444444434455
Q ss_pred EEEecCccccceEEeeeccccCCcc--cceeeeceeEEEEec--ceEEEEEeec
Q 035748 381 VLLLGDVTNFKCRVRSKRKFDMSEP--LAFQAIKGYLLVVCE--EKIFVYNVSA 430 (655)
Q Consensus 381 v~l~gD~~~~~CrVRs~~k~d~~~p--valqaIKGYlLvas~--~~V~VyNvTs 430 (655)
++ |...-++.-+ +.+..+ +++..-..|+++++. ..|.+|++.+
T Consensus 257 ~~---d~~~~~~~~~----~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~ 303 (353)
T 3vgz_A 257 VV---DTRNGNILAK----VAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKS 303 (353)
T ss_dssp EE---ETTTCCEEEE----EECSSCCCEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred EE---ECCCCcEEEE----EEcCCCceEEECCCCCEEEEEECCCCeEEEEECCC
Confidence 44 3322222211 122223 333333457888885 7799999865
No 137
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=85.72 E-value=20 Score=32.33 Aligned_cols=124 Identities=11% Similarity=0.097 Sum_probs=70.4
Q ss_pred cceEEEEccCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEecCCCCCcchhhhhhccccccccC
Q 035748 188 KGRVFVFLRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWSSLVIENVGKYVATEN 267 (655)
Q Consensus 188 ~Grv~Vfs~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~ 267 (655)
.++|++++++|..+-.+.+.....++.|. +-.+..++|+...++.|.... ++|.-. +.+ ..
T Consensus 99 ~~~i~~~d~~g~~~~~~~~~~~~~~~~i~----~~~~g~l~v~~~~~~~i~~~~----~~g~~~--------~~~---~~ 159 (286)
T 1q7f_A 99 THQIQIYNQYGQFVRKFGATILQHPRGVT----VDNKGRIIVVECKVMRVIIFD----QNGNVL--------HKF---GC 159 (286)
T ss_dssp GCEEEEECTTSCEEEEECTTTCSCEEEEE----ECTTSCEEEEETTTTEEEEEC----TTSCEE--------EEE---EC
T ss_pred CCEEEEECCCCcEEEEecCccCCCceEEE----EeCCCCEEEEECCCCEEEEEc----CCCCEE--------EEe---CC
Confidence 78999999999987766554334455532 224557999988888765432 333211 112 11
Q ss_pred CCCCCceEEEEEeecCceeEEEEee-CCCcEEEEeeCCeEEEEEeccC--CC--ceEEEeeeeeeeeecCc
Q 035748 268 GEEGLSVTLLEVHHIGRMRYILSAD-ASGKIRVFKENGMVHGTAAMLS--SK--PLVFLKQRLLFLTECGA 333 (655)
Q Consensus 268 ~~d~~pVt~LE~hrvGr~RYVlsaD-asGrV~VFrenGtl~G~aa~~~--Sr--plaFlkQrllfLTe~Ga 333 (655)
......+..+-+..-|+ +.++| .+++|.+|..+|.......... .. .|++-.+.-+|++..+.
T Consensus 160 ~~~~~~p~~i~~~~~g~---l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~ 227 (286)
T 1q7f_A 160 SKHLEFPNGVVVNDKQE---IFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHN 227 (286)
T ss_dssp TTTCSSEEEEEECSSSE---EEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSS
T ss_pred CCccCCcEEEEECCCCC---EEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCC
Confidence 11222345555554443 44454 4789999999887765552211 22 34544555567776543
No 138
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=82.69 E-value=37 Score=32.95 Aligned_cols=106 Identities=11% Similarity=0.137 Sum_probs=70.3
Q ss_pred ceeEEeecccceEEEEccC-CceEEEEe----cCCCCCeeEEEEeeee-----ecceeEEEeeecCceEEEEEEEecCCC
Q 035748 179 SKYVAVGDDKGRVFVFLRN-GDVSVEFY----TMSELPVTAMVSYVSV-----YKNESVLVTGHENGVILIHKVYEKPNG 248 (655)
Q Consensus 179 skY~AVGD~~Grv~Vfs~~-GDvl~E~~----T~~~spVTAm~SYlsv-----rRNeT~lVTGHadG~V~~hrV~Es~~g 248 (655)
.+++|.|-..+.|.+.+.+ |+...... .+=..+|++ +++... ..+..+|+||..|++|.+-.+...
T Consensus 101 ~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~-v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~--- 176 (393)
T 4gq1_A 101 SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVND-IDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE--- 176 (393)
T ss_dssp EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEE-EEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT---
T ss_pred CCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEE-EEEccccccccCCCCCEEEEEECCCeEEEEECCCC---
Confidence 5689999999999999766 55433221 334578999 555332 247889999999999976665431
Q ss_pred CCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee
Q 035748 249 EDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE 302 (655)
Q Consensus 249 dD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre 302 (655)
. . ...+ ..-..+|+.+.. +.-..++++++..+|.|+||+-
T Consensus 177 ~--~------~~~~-----~~~~~~v~~v~~-~p~~~~~l~~~~~d~~v~~wd~ 216 (393)
T 4gq1_A 177 G--P------ILAG-----YPLSSPGISVQF-RPSNPNQLIVGERNGNIRIFDW 216 (393)
T ss_dssp E--E------EEEE-----EECSSCEEEEEE-ETTEEEEEEEEETTSEEEEEET
T ss_pred c--e------eeee-----cCCCCCcEEEEE-CCCCCceEEecCCCCEEEEEEC
Confidence 0 0 0111 011246776654 4555678999999999999975
No 139
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=81.67 E-value=29 Score=31.11 Aligned_cols=147 Identities=10% Similarity=0.045 Sum_probs=76.8
Q ss_pred eeEEeecccceEEEEccC-CceEEEEecCCCC-CeeEEEEeeeeecceeEEEeeecCceEEEEEEEecCCCCCcchhhhh
Q 035748 180 KYVAVGDDKGRVFVFLRN-GDVSVEFYTMSEL-PVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWSSLVIE 257 (655)
Q Consensus 180 kY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~s-pVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e 257 (655)
+|++++...|.|++++.. |.++..+...... .+.. +++ +. .+..+++++..+|.|.+..+ ..++-
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~-~~~-s~-dg~~l~v~~~~~~~v~~~d~---~~~~~------- 68 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMV-PMV-AP-GGRIAYATVNKSESLVKIDL---VTGET------- 68 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCC-EEE-CT-TSSEEEEEETTTTEEEEEET---TTCCE-------
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccc-eEE-cC-CCCEEEEEeCCCCeEEEEEC---CCCCe-------
Confidence 588999999999999876 7777666644321 2333 222 22 24467788888888765432 11211
Q ss_pred hccccccccCCCCCCceEEEEEeecCceeEEEEee------------CCCcEEEEeeC-CeEEEEEeccCC--CceEEEe
Q 035748 258 NVGKYVATENGEEGLSVTLLEVHHIGRMRYILSAD------------ASGKIRVFKEN-GMVHGTAAMLSS--KPLVFLK 322 (655)
Q Consensus 258 ~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaD------------asGrV~VFren-Gtl~G~aa~~~S--rplaFlk 322 (655)
.+.+.....+..+..+..+.+..=| +++++++ .++.|.||... +.+.... .... ..++|-.
T Consensus 69 -~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~s~ 144 (337)
T 1pby_B 69 -LGRIDLSTPEERVKSLFGAALSPDG--KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAF-EAPRQITMLAWAR 144 (337)
T ss_dssp -EEEEECCBTTEEEECTTCEEECTTS--SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEE-ECCSSCCCEEECT
T ss_pred -EeeEEcCCcccccccccceEECCCC--CEEEEEecccccccccccccCceEEEEECCCCcEEEEE-eCCCCcceeEECC
Confidence 1111100000000112222232222 3455554 56899999874 5555544 2222 3455543
Q ss_pred -eeeeeeeecCccccccccCcc
Q 035748 323 -QRLLFLTECGAGSLDLRTMKL 343 (655)
Q Consensus 323 -QrllfLTe~GaaslDLrtm~v 343 (655)
.+.++.+..-+...|+.+.++
T Consensus 145 dg~~l~~~~~~i~~~d~~~~~~ 166 (337)
T 1pby_B 145 DGSKLYGLGRDLHVMDPEAGTL 166 (337)
T ss_dssp TSSCEEEESSSEEEEETTTTEE
T ss_pred CCCEEEEeCCeEEEEECCCCcE
Confidence 344566654455567777654
No 140
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=81.50 E-value=13 Score=43.53 Aligned_cols=138 Identities=17% Similarity=0.228 Sum_probs=84.7
Q ss_pred eeeeeec--CCccceeeeccCCCCCCcceeEEeec----------ccceEEEEcc-CCceEEEEecCCCCCeeEEEEeee
Q 035748 154 FVSAVKL--ESDPTCINILPFRDYEGHSKYVAVGD----------DKGRVFVFLR-NGDVSVEFYTMSELPVTAMVSYVS 220 (655)
Q Consensus 154 fvSAvkl--da~aTal~vLP~r~~~glskY~AVGD----------~~Grv~Vfs~-~GDvl~E~~T~~~spVTAm~SYls 220 (655)
-+...++ +--|+|+..+.+.+. ...|++||. .+|||+||.- ++.+-.-+.+...-|||||..+
T Consensus 819 ~i~~~~l~~nE~~~sv~~v~~~~~--~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-- 894 (1158)
T 3ei3_A 819 VLHAHQFLQNEYALSLVSCKLGKD--PNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-- 894 (1158)
T ss_dssp EEEEEECCTTEEEEEEEEECCTTC--CCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE--
T ss_pred EEEEEeCCCCcceEEEEEEEEccC--CCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee--
Confidence 3444555 334678888888764 457999996 6899999965 4777777888889999998775
Q ss_pred eecceeEEEeeecCceEEEEEEEecC-CC-C--Ccch---hhhhhccc---------------c-------ccccCCCCC
Q 035748 221 VYKNESVLVTGHENGVILIHKVYEKP-NG-E--DWSS---LVIENVGK---------------Y-------VATENGEEG 271 (655)
Q Consensus 221 vrRNeT~lVTGHadG~V~~hrV~Es~-~g-d--D~~s---Ls~e~~r~---------------~-------~~~e~~~d~ 271 (655)
|..+|+ | .+..|.++.+-+.. -. + .+.+ +.+...+. | ..--++-..
T Consensus 895 ---~g~Lla-~-ig~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~ 969 (1158)
T 3ei3_A 895 ---NGKLLA-S-INSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNP 969 (1158)
T ss_dssp ---TTEEEE-E-ETTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSC
T ss_pred ---CCEEEE-E-cCCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeeccc
Confidence 333433 3 24556555543210 00 0 0100 01100010 1 011134455
Q ss_pred CceEEEEEeecCceeEEEEeeCCCcEEEEeeC
Q 035748 272 LSVTLLEVHHIGRMRYILSADASGKIRVFKEN 303 (655)
Q Consensus 272 ~pVt~LE~hrvGr~RYVlsaDasGrV~VFren 303 (655)
.-||++|+--- .+++++|..|.|.|++-|
T Consensus 970 ~~vta~~~ld~---~t~l~aD~~gNl~vl~~~ 998 (1158)
T 3ei3_A 970 NWMSAVEILDD---DNFLGAENAFNLFVCQKD 998 (1158)
T ss_dssp BCEEEEEEEET---TEEEEEETTSEEEEEEEC
T ss_pred ccEEEEEEEcc---CcEEEEcCCCcEEEEecC
Confidence 67888888643 388999999999999875
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=80.73 E-value=33 Score=31.18 Aligned_cols=223 Identities=13% Similarity=0.081 Sum_probs=103.9
Q ss_pred eeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEecCCCCCcchhhhhh
Q 035748 180 KYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWSSLVIEN 258 (655)
Q Consensus 180 kY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~ 258 (655)
+.|+++-..|.|++++.+ |.++..+... ..++ . +++ +. .+..+++++..++.|.+..+. .+. + .
T Consensus 11 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~-~-~~~-s~-dg~~l~~~~~~~~~i~~~d~~---~~~----~---~ 75 (331)
T 3u4y_A 11 FGIVVEQHLRRISFFSTDTLEILNQITLG-YDFV-D-TAI-TS-DCSNVVVTSDFCQTLVQIETQ---LEP----P---K 75 (331)
T ss_dssp EEEEEEGGGTEEEEEETTTCCEEEEEECC-CCEE-E-EEE-CS-SSCEEEEEESTTCEEEEEECS---SSS----C---E
T ss_pred EEEEEecCCCeEEEEeCcccceeeeEEcc-CCcc-e-EEE-cC-CCCEEEEEeCCCCeEEEEECC---CCc----e---e
Confidence 336666678899999876 8887777655 3344 3 443 23 244578888878877554332 111 0 0
Q ss_pred ccccccccCCCCCCceEEEEEeecCceeEEEEeeCC-C--cEEEEee-CCeEEEEEeccCCC--ceEEEee-eeeeeeec
Q 035748 259 VGKYVATENGEEGLSVTLLEVHHIGRMRYILSADAS-G--KIRVFKE-NGMVHGTAAMLSSK--PLVFLKQ-RLLFLTEC 331 (655)
Q Consensus 259 ~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDas-G--rV~VFre-nGtl~G~aa~~~Sr--plaFlkQ-rllfLTe~ 331 (655)
.+.+ ..+ ..+...+-+.. ..+++++++.+ + .|.||.- .|.+.... ..... -++|-.. +.++.+..
T Consensus 76 ~~~~---~~~--~~~~~~~~~s~--dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~ 147 (331)
T 3u4y_A 76 VVAI---QEG--QSSMADVDITP--DDQFAVTVTGLNHPFNMQSYSFLKNKFISTI-PIPYDAVGIAISPNGNGLILIDR 147 (331)
T ss_dssp EEEE---EEC--SSCCCCEEECT--TSSEEEECCCSSSSCEEEEEETTTTEEEEEE-ECCTTEEEEEECTTSSCEEEEEE
T ss_pred EEec---ccC--CCCccceEECC--CCCEEEEecCCCCcccEEEEECCCCCeEEEE-ECCCCccceEECCCCCEEEEEec
Confidence 1111 011 11221122322 23344455555 3 8999986 36665555 22323 2344332 34555554
Q ss_pred Cccc----cccccCc-ccccccC-CCCcccceeeeccccccceeeeeccCCcEEEEEEecCccccce--EEeeeccccCC
Q 035748 332 GAGS----LDLRTMK-LRETECE-GLNNSLVRNYVFDATERSKAYGYTSEGDLIHVLLLGDVTNFKC--RVRSKRKFDMS 403 (655)
Q Consensus 332 Gaas----lDLrtm~-vr~~pCe-GLN~S~i~syaFD~~~rsKaYG~T~~G~Li~v~l~gD~~~~~C--rVRs~~k~d~~ 403 (655)
+... .|+..-. +...... --.+..+...+|++..+ ++|-.+..+.-|++|=.- .-++ .+..... ..
T Consensus 148 ~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~-~l~v~~~~~~~v~v~d~~---~~~~~~~~~~~~~--~~ 221 (331)
T 3u4y_A 148 SSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGN-FAFVANLIGNSIGILETQ---NPENITLLNAVGT--NN 221 (331)
T ss_dssp TTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSS-EEEEEETTTTEEEEEECS---STTSCEEEEEEEC--SS
T ss_pred CCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCC-EEEEEeCCCCeEEEEECC---CCcccceeeeccC--CC
Confidence 4222 2333210 0000000 01233456667766543 244444444445544322 2222 1111110 11
Q ss_pred cc--cceeeeceeEEEEec--ceEEEEEeece
Q 035748 404 EP--LAFQAIKGYLLVVCE--EKIFVYNVSAQ 431 (655)
Q Consensus 404 ~p--valqaIKGYlLvas~--~~V~VyNvTsq 431 (655)
.| +++..=..||++++. ..|.+|+..+.
T Consensus 222 ~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~ 253 (331)
T 3u4y_A 222 LPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG 253 (331)
T ss_dssp CCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred CCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence 22 333332357888875 56889998763
No 142
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=80.02 E-value=35 Score=31.06 Aligned_cols=53 Identities=8% Similarity=0.055 Sum_probs=34.8
Q ss_pred eEEeecccceEEEEccCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEE
Q 035748 181 YVAVGDDKGRVFVFLRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILI 239 (655)
Q Consensus 181 Y~AVGD~~Grv~Vfs~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~ 239 (655)
.++++...|+|+.++++|. .-.+. .....+.+| + +-.+..++|+.+.++.|..
T Consensus 42 l~~~~~~~~~i~~~~~~~~-~~~~~-~~~~~~~~l-~---~~~dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 42 VIFSDVRQNRTWAWSDDGQ-LSPEM-HPSHHQNGH-C---LNKQGHLIACSHGLRRLER 94 (296)
T ss_dssp EEEEEGGGTEEEEEETTSC-EEEEE-SSCSSEEEE-E---ECTTCCEEEEETTTTEEEE
T ss_pred EEEEeCCCCEEEEEECCCC-eEEEE-CCCCCccee-e---ECCCCcEEEEecCCCeEEE
Confidence 5667888899999999977 43333 333444442 2 3356678888887776654
No 143
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=79.77 E-value=42 Score=31.81 Aligned_cols=222 Identities=13% Similarity=0.166 Sum_probs=98.2
Q ss_pred eEEeecccceEEEEcc-CCceEEEEecCCCCCeeEEEEe-eeeecceeEEEeeecCceEEEEEEEecCCCCC-cch-hhh
Q 035748 181 YVAVGDDKGRVFVFLR-NGDVSVEFYTMSELPVTAMVSY-VSVYKNESVLVTGHENGVILIHKVYEKPNGED-WSS-LVI 256 (655)
Q Consensus 181 Y~AVGD~~Grv~Vfs~-~GDvl~E~~T~~~spVTAm~SY-lsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD-~~s-Ls~ 256 (655)
.+.+|...|.|+.+++ +|.++-.+.... ++..+..+ ..+.-+. .|+.|..+|.|.+.... +|+- |.. +..
T Consensus 145 ~v~v~~~~g~l~~~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~~-~v~~g~~~g~l~~~d~~---tG~~~w~~~~~~ 218 (376)
T 3q7m_A 145 LVLIHTSNGQLQALNEADGAVKWTVNLDM--PSLSLRGESAPTTAFG-AAVVGGDNGRVSAVLME---QGQMIWQQRISQ 218 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC-------CCCCCCEEETT-EEEECCTTTEEEEEETT---TCCEEEEEECCC
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEeCCC--CceeecCCCCcEEECC-EEEEEcCCCEEEEEECC---CCcEEEEEeccc
Confidence 5677888899999986 599888877542 22111000 0111233 45567778877665431 1111 110 000
Q ss_pred h-hccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee-CCeEEEEEeccCCCceEEEeeeeeeeeec-Cc
Q 035748 257 E-NVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE-NGMVHGTAAMLSSKPLVFLKQRLLFLTEC-GA 333 (655)
Q Consensus 257 e-~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre-nGtl~G~aa~~~SrplaFlkQrllfLTe~-Ga 333 (655)
. ....+ ..-..-.+.|+.. + ..|.++..+|.|..+.. +|.+.=.........++.-..+|...|.. +.
T Consensus 219 ~~~~~~~-~~~~~~~~~p~~~------~--~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~l~~~~~~g~l 289 (376)
T 3q7m_A 219 ATGSTEI-DRLSDVDTTPVVV------N--GVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIVDGNRIYLVDQNDRV 289 (376)
T ss_dssp ------------CCCCCCEEE------T--TEEEEECTTSCEEEEETTTCCEEEEECCCCEEEEEEETTEEEEEETTCCE
T ss_pred CCCCccc-ccccccCCCcEEE------C--CEEEEEecCcEEEEEECCCCcEEeeccCCCCCCceEECCEEEEEcCCCeE
Confidence 0 00000 0001122344422 2 23444455677777775 56554333111111222223445445544 56
Q ss_pred cccccccCcc-cccccCCCCcccceeeeccccccceeeeeccCCcEEEEEEecCccccceEEeeeccccCCcccceeeec
Q 035748 334 GSLDLRTMKL-RETECEGLNNSLVRNYVFDATERSKAYGYTSEGDLIHVLLLGDVTNFKCRVRSKRKFDMSEPLAFQAIK 412 (655)
Q Consensus 334 aslDLrtm~v-r~~pCeGLN~S~i~syaFD~~~rsKaYG~T~~G~Li~v~l~gD~~~~~CrVRs~~k~d~~~pvalqaIK 412 (655)
-++|+.|-++ ++.+ .+.+..+.+.+. .-.+.|-.+.+|.|. ++=. +...+..+...... .+ ..+.....
T Consensus 290 ~~~d~~tG~~~w~~~--~~~~~~~~~~~~---~~~~l~v~~~~g~l~-~~d~-~tG~~~~~~~~~~~-~~--~~~~~~~~ 359 (376)
T 3q7m_A 290 MALTIDGGVTLWTQS--DLLHRLLTSPVL---YNGNLVVGDSEGYLH-WINV-EDGRFVAQQKVDSS-GF--QTEPVAAD 359 (376)
T ss_dssp EEEETTTCCEEEEEC--TTTTSCCCCCEE---ETTEEEEECTTSEEE-EEET-TTCCEEEEEECCTT-CB--CSCCEEET
T ss_pred EEEECCCCcEEEeec--ccCCCcccCCEE---ECCEEEEEeCCCeEE-EEEC-CCCcEEEEEecCCC-cc--eeCCEEEC
Confidence 6778887553 3332 121111111111 125667666666433 2211 11122222211000 11 11223358
Q ss_pred eeEEEEecc-eEEEEE
Q 035748 413 GYLLVVCEE-KIFVYN 427 (655)
Q Consensus 413 GYlLvas~~-~V~VyN 427 (655)
|.|+|.+.+ .|.+||
T Consensus 360 ~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 360 GKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TEEEEEBTTSCEEEEE
T ss_pred CEEEEEeCCCEEEEEe
Confidence 999999985 688886
No 144
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=79.29 E-value=3.7 Score=41.41 Aligned_cols=72 Identities=19% Similarity=0.139 Sum_probs=51.1
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILI 239 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~ 239 (655)
+..|+++..-|.. ..++|+|...|.|.+++-. |..+... .....+|++ +++- .+...|++|+.||.|.+
T Consensus 149 ~~~V~~v~~~p~~-----~~~las~s~Dg~v~iwD~~~~~~~~~~-~~~~~~v~~-v~ws---pdg~~lasgs~dg~v~i 218 (434)
T 2oit_A 149 GGMVIDMKWNPTV-----PSMVAVCLADGSIAVLQVTETVKVCAT-LPSTVAVTS-VCWS---PKGKQLAVGKQNGTVVQ 218 (434)
T ss_dssp GGSEEEEEECSSC-----TTEEEEEETTSCEEEEEESSSEEEEEE-ECGGGCEEE-EEEC---TTSSCEEEEETTSCEEE
T ss_pred CCceEEEEECCCC-----CCEEEEEECCCeEEEEEcCCCcceeec-cCCCCceeE-EEEc---CCCCEEEEEcCCCcEEE
Confidence 5567777776642 4689999999999999665 6443333 233568888 4542 46889999999999976
Q ss_pred EEE
Q 035748 240 HKV 242 (655)
Q Consensus 240 hrV 242 (655)
..+
T Consensus 219 wd~ 221 (434)
T 2oit_A 219 YLP 221 (434)
T ss_dssp ECT
T ss_pred Ecc
Confidence 543
No 145
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=79.19 E-value=40 Score=31.19 Aligned_cols=126 Identities=14% Similarity=0.190 Sum_probs=63.0
Q ss_pred CCccceeeeccCCCCCCcceeEEee-cccceEEEEccC-Cc--eEEEEecCCCCCeeEEEEeeeeecce-eEEEeeecCc
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVG-DDKGRVFVFLRN-GD--VSVEFYTMSELPVTAMVSYVSVYKNE-SVLVTGHENG 235 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVG-D~~Grv~Vfs~~-GD--vl~E~~T~~~spVTAm~SYlsvrRNe-T~lVTGHadG 235 (655)
...++++.+=| +|- .|++.. +..|.|++++.+ |. .+..+...... ++. ++ +..+. .+++++..+|
T Consensus 39 ~~~p~~~a~sp----dg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~-p~~-~a---~spdg~~l~~~~~~~~ 108 (347)
T 3hfq_A 39 TQNPTYLALSA----KDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTP-PAY-VA---VDEARQLVYSANYHKG 108 (347)
T ss_dssp CSCCCCEEECT----TCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCC-CSE-EE---EETTTTEEEEEETTTT
T ss_pred cCCcceEEEcc----CCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCC-CEE-EE---ECCCCCEEEEEeCCCC
Confidence 34555665555 454 444333 347999999876 44 22232233333 343 23 22344 4666666899
Q ss_pred eEEEEEEEecCCCCCcchhhhhhcccccccc----CCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC--CeE
Q 035748 236 VILIHKVYEKPNGEDWSSLVIENVGKYVATE----NGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN--GMV 306 (655)
Q Consensus 236 ~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e----~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren--Gtl 306 (655)
.|.+..+.. +|. ... +..+.... .......+..+.+..=|+ .+++.-.+++|.||+-+ |.+
T Consensus 109 ~v~v~~~~~--~g~-~~~-----~~~~~~~~~~p~~~~~~~~~~~~~~spdg~--l~v~~~~~~~v~~~~~~~~g~~ 175 (347)
T 3hfq_A 109 TAEVMKIAA--DGA-LTL-----TDTVQHSGHGPRPEQDGSHIHYTDLTPDNR--LAVIDLGSDKVYVYNVSDAGQL 175 (347)
T ss_dssp EEEEEEECT--TSC-EEE-----EEEEECCCCCSSTTCSSCCEEEEEECTTSC--EEEEETTTTEEEEEEECTTSCE
T ss_pred EEEEEEeCC--CCC-eee-----cceeecCCCCCCccccCCCceEEEECCCCc--EEEEeCCCCEEEEEEECCCCcE
Confidence 998877642 111 000 01110000 111234466665555555 44444457789999875 544
No 146
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=77.27 E-value=17 Score=42.60 Aligned_cols=90 Identities=14% Similarity=0.214 Sum_probs=62.4
Q ss_pred ceeeeeeecCCccceeeeccCCCCCCcceeEEeecc-cceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEE
Q 035748 152 FQFVSAVKLESDPTCINILPFRDYEGHSKYVAVGDD-KGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLV 229 (655)
Q Consensus 152 F~fvSAvklda~aTal~vLP~r~~~glskY~AVGD~-~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lV 229 (655)
++.+.-..++.+++|+.+-|......-++|+|||-. .+.|.+++-+ -+.+....-+.+++.+++.-. .. -.+..|+
T Consensus 544 L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~-~~-~~~~~L~ 621 (1158)
T 3ei3_A 544 LRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMT-TF-ESSHYLL 621 (1158)
T ss_dssp EEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEE-EE-TTEEEEE
T ss_pred eeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEE-Ee-CCCcEEE
Confidence 344455667899999999887666668999999996 9999999655 343332233334555664322 12 3567899
Q ss_pred eeecCceEEEEEEE
Q 035748 230 TGHENGVILIHKVY 243 (655)
Q Consensus 230 TGHadG~V~~hrV~ 243 (655)
.|..||.++-.++-
T Consensus 622 igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 622 CALGDGALFYFGLN 635 (1158)
T ss_dssp EEETTSEEEEEEEC
T ss_pred EEeCCCeEEEEEEc
Confidence 99999999877653
No 147
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=72.54 E-value=51 Score=29.14 Aligned_cols=216 Identities=12% Similarity=0.056 Sum_probs=105.5
Q ss_pred eEEeecccceEEEEccCCceEEEEecC-CCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEecCCCCCcchhhhhhc
Q 035748 181 YVAVGDDKGRVFVFLRNGDVSVEFYTM-SELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWSSLVIENV 259 (655)
Q Consensus 181 Y~AVGD~~Grv~Vfs~~GDvl~E~~T~-~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~~ 259 (655)
.+++....|+|++++++|.+ ..+... ...-+..|. +-.+..+.|+...++.|.... +++.-
T Consensus 70 l~v~~~~~~~i~~~~~~g~~-~~~~~~~~~~~~~~i~----~~~~g~l~v~~~~~~~i~~~d----~~g~~--------- 131 (299)
T 2z2n_A 70 VWFTENAANKIGRITKKGII-KEYTLPNPDSAPYGIT----EGPNGDIWFTEMNGNRIGRIT----DDGKI--------- 131 (299)
T ss_dssp EEEEETTTTEEEEECTTSCE-EEEECSSTTCCEEEEE----ECTTSCEEEEETTTTEEEEEC----TTCCE---------
T ss_pred EEEeCCCCCeEEEECCCCcE-EEEeCCCcCCCceeeE----ECCCCCEEEEecCCceEEEEC----CCCCE---------
Confidence 34444447899999998874 223211 222334422 235678888887777765432 22210
Q ss_pred cccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeCCeEEEEEecc--CCCc--eEEEeeeeeeeeecC---
Q 035748 260 GKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKENGMVHGTAAML--SSKP--LVFLKQRLLFLTECG--- 332 (655)
Q Consensus 260 r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFrenGtl~G~aa~~--~Srp--laFlkQrllfLTe~G--- 332 (655)
..+. .......+..+.+..-| +..++...++.|.+|..+|.+.-.. .+ ...| +++-++.-+|++..+
T Consensus 132 ~~~~---~~~~~~~~~~i~~~~~g--~l~v~~~~~~~i~~~~~~g~~~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~~~~ 205 (299)
T 2z2n_A 132 REYE---LPNKGSYPSFITLGSDN--ALWFTENQNNAIGRITESGDITEFK-IPTPASGPVGITKGNDDALWFVEIIGNK 205 (299)
T ss_dssp EEEE---CSSTTCCEEEEEECTTS--CEEEEETTTTEEEEECTTCCEEEEE-CSSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred EEec---CCCCCCCCceEEEcCCC--CEEEEeCCCCEEEEEcCCCcEEEee-CCCCCCcceeEEECCCCCEEEEccCCce
Confidence 0110 01122334554443333 2223333467888887777665432 12 2223 333344456777643
Q ss_pred ccccccccCcccccccCCCCcccceeeeccccccceeeeeccCCcEEEEEEecCccccceEEeeecc-ccCCcccceeee
Q 035748 333 AGSLDLRTMKLRETECEGLNNSLVRNYVFDATERSKAYGYTSEGDLIHVLLLGDVTNFKCRVRSKRK-FDMSEPLAFQAI 411 (655)
Q Consensus 333 aaslDLrtm~vr~~pCeGLN~S~i~syaFD~~~rsKaYG~T~~G~Li~v~l~gD~~~~~CrVRs~~k-~d~~~pvalqaI 411 (655)
+...|+ +-+....... .....+...++|+.. +.|--+....-|..+=. +. .++.... .....|..+.--
T Consensus 206 i~~~~~-~g~~~~~~~~-~~~~~~~~i~~~~~g--~l~v~~~~~~~i~~~d~-~g-----~~~~~~~~~~~~~~~~i~~~ 275 (299)
T 2z2n_A 206 IGRITT-SGEITEFKIP-TPNARPHAITAGAGI--DLWFTEWGANKIGRLTS-NN-----IIEEYPIQIKSAEPHGICFD 275 (299)
T ss_dssp EEEECT-TCCEEEEECS-STTCCEEEEEECSTT--CEEEEETTTTEEEEEET-TT-----EEEEEECSSSSCCEEEEEEC
T ss_pred EEEECC-CCcEEEEECC-CCCCCceeEEECCCC--CEEEeccCCceEEEECC-CC-----ceEEEeCCCCCCccceEEec
Confidence 334466 4443332221 123456677787653 46655433333333322 21 1221111 112334444336
Q ss_pred ceeEEEEe-cceEEEEEeec
Q 035748 412 KGYLLVVC-EEKIFVYNVSA 430 (655)
Q Consensus 412 KGYlLvas-~~~V~VyNvTs 430 (655)
.|.|++++ .+.|..|+..+
T Consensus 276 ~g~l~v~~~~~~l~~~~~~~ 295 (299)
T 2z2n_A 276 GETIWFAMECDKIGKLTLIK 295 (299)
T ss_dssp SSCEEEEETTTEEEEEEEC-
T ss_pred CCCEEEEecCCcEEEEEcCc
Confidence 79999997 57898988765
No 148
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=69.78 E-value=65 Score=29.24 Aligned_cols=145 Identities=6% Similarity=-0.006 Sum_probs=77.7
Q ss_pred eeEEeecccc---eEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCce-EEEEEEEecCCCCCcchh
Q 035748 180 KYVAVGDDKG---RVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGV-ILIHKVYEKPNGEDWSSL 254 (655)
Q Consensus 180 kY~AVGD~~G---rv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~-V~~hrV~Es~~gdD~~sL 254 (655)
+|+++++..| .|++++.+ |.++..+... ..| .. +++ +. -+..+++++..++. |.+.++.. .|. ....
T Consensus 96 ~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~-~~-~~~-sp-dg~~l~~~~~~~~~~i~~~~~~~--~g~-~~~~ 167 (331)
T 3u4y_A 96 QFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDA-VG-IAI-SP-NGNGLILIDRSSANTVRRFKIDA--DGV-LFDT 167 (331)
T ss_dssp SEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTE-EE-EEE-CT-TSSCEEEEEETTTTEEEEEEECT--TCC-EEEE
T ss_pred CEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCc-cc-eEE-CC-CCCEEEEEecCCCceEEEEEECC--CCc-Eeec
Confidence 4555777664 89999876 6665555443 333 33 332 23 24468888888888 88877642 110 0000
Q ss_pred hhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC-CeE---EEEEeccCC--CceEEEe-eeeee
Q 035748 255 VIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN-GMV---HGTAAMLSS--KPLVFLK-QRLLF 327 (655)
Q Consensus 255 s~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren-Gtl---~G~aa~~~S--rplaFlk-Qrllf 327 (655)
. .+.+ ..+.....+.+..=|+ ..++++..++.|.||+.. |.+ .... .... ..++|-+ .+.++
T Consensus 168 ~---~~~~------~~~~~~~~~~~spdg~-~l~v~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~ 236 (331)
T 3u4y_A 168 G---QEFI------SGGTRPFNITFTPDGN-FAFVANLIGNSIGILETQNPENITLLNAV-GTNNLPGTIVVSRDGSTVY 236 (331)
T ss_dssp E---EEEE------CSSSSEEEEEECTTSS-EEEEEETTTTEEEEEECSSTTSCEEEEEE-ECSSCCCCEEECTTSSEEE
T ss_pred C---Cccc------cCCCCccceEECCCCC-EEEEEeCCCCeEEEEECCCCcccceeeec-cCCCCCceEEECCCCCEEE
Confidence 0 0111 1122345555544333 233444568899999874 665 5554 2222 3456554 35566
Q ss_pred eeecCccc---cccccCcc
Q 035748 328 LTECGAGS---LDLRTMKL 343 (655)
Q Consensus 328 LTe~Gaas---lDLrtm~v 343 (655)
++..+... .|+.+.++
T Consensus 237 v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 237 VLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp EECSSEEEEEEEETTTTEE
T ss_pred EEEcCCCEEEEEECCCCce
Confidence 66655433 46666544
No 149
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=67.53 E-value=81 Score=29.42 Aligned_cols=71 Identities=18% Similarity=0.363 Sum_probs=39.7
Q ss_pred CCccceeeeccCCCCCCcceeEEeecc----cceEEEEc--cC-CceE--EEEecCCCCCeeEEEEeeeeecceeEEEee
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDD----KGRVFVFL--RN-GDVS--VEFYTMSELPVTAMVSYVSVYKNESVLVTG 231 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~----~Grv~Vfs--~~-GDvl--~E~~T~~~spVTAm~SYlsvrRNeT~lVTG 231 (655)
...++++.+-| +| ++++++++ .|.|.++. .+ |.+. ....+....|. ++.+ -+..++++.
T Consensus 49 ~~~p~~l~~sp----dg--~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~-----~~~~-dg~~l~~~~ 116 (361)
T 3scy_A 49 VANPSYLIPSA----DG--KFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPC-----YLTT-NGKNIVTAN 116 (361)
T ss_dssp CSCCCSEEECT----TS--SEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEE-----EEEE-CSSEEEEEE
T ss_pred CCCCceEEECC----CC--CEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcE-----EEEE-CCCEEEEEE
Confidence 34455555544 34 34444443 48887774 43 5432 22333333332 2334 566788888
Q ss_pred ecCceEEEEEEE
Q 035748 232 HENGVILIHKVY 243 (655)
Q Consensus 232 HadG~V~~hrV~ 243 (655)
..+|.|.+.++.
T Consensus 117 ~~~~~v~~~~~~ 128 (361)
T 3scy_A 117 YSGGSITVFPIG 128 (361)
T ss_dssp TTTTEEEEEEBC
T ss_pred CCCCEEEEEEeC
Confidence 899999888774
No 150
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=60.70 E-value=88 Score=27.53 Aligned_cols=212 Identities=11% Similarity=0.069 Sum_probs=100.1
Q ss_pred cccceEEEEccCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEecCCCCCcchhhhhhccccccc
Q 035748 186 DDKGRVFVFLRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWSSLVIENVGKYVAT 265 (655)
Q Consensus 186 D~~Grv~Vfs~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~ 265 (655)
...|+|+++++++.............+..| + +-.+..+.|+.. +|.|... .+.+..... +
T Consensus 43 ~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i-~---~~~~g~l~v~~~-~~~i~~~----d~~~~~~~~--------~--- 102 (270)
T 1rwi_B 43 GMYGRVVKLATGSTGTTVLPFNGLYQPQGL-A---VDGAGTVYVTDF-NNRVVTL----AAGSNNQTV--------L--- 102 (270)
T ss_dssp SSSCEEEEECC-----EECCCCSCCSCCCE-E---ECTTCCEEEEET-TTEEEEE----CTTCSCCEE--------C---
T ss_pred CCCCcEEEecCCCcccceEeeCCcCCccee-E---ECCCCCEEEEcC-CCEEEEE----eCCCceEee--------e---
Confidence 456889999887654333322222233442 2 223555777776 7765432 233322111 1
Q ss_pred cCCCCCCceEEEEEeecCceeEEEEee-CCCcEEEEeeCCeEEEEE-ecc--CCCceEEEeeeeeeeeecCc---ccccc
Q 035748 266 ENGEEGLSVTLLEVHHIGRMRYILSAD-ASGKIRVFKENGMVHGTA-AML--SSKPLVFLKQRLLFLTECGA---GSLDL 338 (655)
Q Consensus 266 e~~~d~~pVt~LE~hrvGr~RYVlsaD-asGrV~VFrenGtl~G~a-a~~--~SrplaFlkQrllfLTe~Ga---aslDL 338 (655)
. ......+..+.+..-| + +.++| .+|+|.+|.......-.. ... ....|++-+..-+|++..+. ...|+
T Consensus 103 ~-~~~~~~p~~i~~~~~g--~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~ 178 (270)
T 1rwi_B 103 P-FDGLNYPEGLAVDTQG--A-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEA 178 (270)
T ss_dssp C-CCSCSSEEEEEECTTC--C-EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECT
T ss_pred e-cCCcCCCcceEECCCC--C-EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEec
Confidence 0 0111234555555433 2 44444 468899885432211111 011 12346655544477777643 34466
Q ss_pred ccCcccccccCCCCcccceeeeccccccceeeeeccCCcEEEEEEecCccccceEEeeeccccCCcccceee-eceeEEE
Q 035748 339 RTMKLRETECEGLNNSLVRNYVFDATERSKAYGYTSEGDLIHVLLLGDVTNFKCRVRSKRKFDMSEPLAFQA-IKGYLLV 417 (655)
Q Consensus 339 rtm~vr~~pCeGLN~S~i~syaFD~~~rsKaYG~T~~G~Li~v~l~gD~~~~~CrVRs~~k~d~~~pvalqa-IKGYlLv 417 (655)
.+.......-.++ ..+...++|+.. +.|--+..+.-|+.+-. ....+..- .......|..++- =.|.|+|
T Consensus 179 ~~~~~~~~~~~~~--~~p~~i~~d~~g--~l~v~~~~~~~v~~~~~---~~~~~~~~--~~~~~~~p~~i~~~~~g~l~v 249 (270)
T 1rwi_B 179 ESNNQVVLPFTDI--TAPWGIAVDEAG--TVYVTEHNTNQVVKLLA---GSTTSTVL--PFTGLNTPLAVAVDSDRTVYV 249 (270)
T ss_dssp TTCCEEECCCSSC--CSEEEEEECTTC--CEEEEETTTSCEEEECT---TCSCCEEC--CCCSCSCEEEEEECTTCCEEE
T ss_pred CCCceEeecccCC--CCceEEEECCCC--CEEEEECCCCcEEEEcC---CCCcceee--ccCCCCCceeEEECCCCCEEE
Confidence 6554444333333 456677777754 67766655544554422 11122211 1111234544432 2588888
Q ss_pred Eec--ceEEEEEeec
Q 035748 418 VCE--EKIFVYNVSA 430 (655)
Q Consensus 418 as~--~~V~VyNvTs 430 (655)
++. ..|.+|+...
T Consensus 250 ~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 250 ADRGNDRVVKLTSLE 264 (270)
T ss_dssp EEGGGTEEEEECCCG
T ss_pred EECCCCEEEEEcCCC
Confidence 875 5677777654
No 151
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=60.54 E-value=1.1e+02 Score=28.53 Aligned_cols=103 Identities=15% Similarity=0.166 Sum_probs=51.0
Q ss_pred eeEEee----cccceEEEEcc---CCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecC----ceEEEEEEEecCCC
Q 035748 180 KYVAVG----DDKGRVFVFLR---NGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHEN----GVILIHKVYEKPNG 248 (655)
Q Consensus 180 kY~AVG----D~~Grv~Vfs~---~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHad----G~V~~hrV~Es~~g 248 (655)
.|+.|| ...+.|+++.- .|.+..-... ....++. +.+..+...|+++..+ |.|.+.++-.. .|
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~----l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~-~g 87 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSY----LIPSADGKFVYSVNEFSKDQAAVSAFAFDKE-KG 87 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCS----EEECTTSSEEEEEECCSSTTCEEEEEEEETT-TT
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCce----EEECCCCCEEEEEEccCCCCCcEEEEEEeCC-CC
Confidence 466777 34456777743 3665433333 2233333 2233455656665554 88888876531 01
Q ss_pred CCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEee-CCCcEEEEeeC
Q 035748 249 EDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSAD-ASGKIRVFKEN 303 (655)
Q Consensus 249 dD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaD-asGrV~VFren 303 (655)
. + ..+... . ..+....++-+ ..+++++++ .+|.|.||+-+
T Consensus 88 ~----~--~~~~~~---~--~~~~~p~~~~~----dg~~l~~~~~~~~~v~~~~~~ 128 (361)
T 3scy_A 88 T----L--HLLNTQ---K--TMGADPCYLTT----NGKNIVTANYSGGSITVFPIG 128 (361)
T ss_dssp E----E--EEEEEE---E--CSSSCEEEEEE----CSSEEEEEETTTTEEEEEEBC
T ss_pred c----E--EEeeEe---c--cCCCCcEEEEE----CCCEEEEEECCCCEEEEEEeC
Confidence 0 1 000111 0 11223344444 444555555 67899999863
No 152
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=59.78 E-value=1.9e+02 Score=31.00 Aligned_cols=60 Identities=8% Similarity=0.071 Sum_probs=41.8
Q ss_pred cceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEE
Q 035748 178 HSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVY 243 (655)
Q Consensus 178 lskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~ 243 (655)
--++|++.-..|.|.|++.+ |.++..+.++. .| .. +. +..+...|.++..||.|.+..++
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p-~~-v~---~SpDGr~lyv~~~dg~V~viD~~ 226 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AV-HI-SR---LSASGRYLFVIGRDGKVNMIDLW 226 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CE-EE-EE---ECTTSCEEEEEETTSEEEEEETT
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-Cc-cc-eE---ECCCCCEEEEEcCCCeEEEEECC
Confidence 34667777778999999877 88888887763 22 22 22 33466666666789999988874
No 153
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=59.20 E-value=26 Score=33.14 Aligned_cols=53 Identities=15% Similarity=0.151 Sum_probs=39.5
Q ss_pred eeEEeecccceEEEEccCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEE
Q 035748 180 KYVAVGDDKGRVFVFLRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVIL 238 (655)
Q Consensus 180 kY~AVGD~~Grv~Vfs~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~ 238 (655)
.|+++....|+|++|+++|.++-++... ..|-.+ + +.-|..+||++..++.|.
T Consensus 137 ~~lv~~~~~~~v~~~d~~G~~~w~~~~~-~~~~~~--~---~~~~g~~~v~~~~~~~v~ 189 (276)
T 3no2_A 137 NYLVPLFATSEVREIAPNGQLLNSVKLS-GTPFSS--A---FLDNGDCLVACGDAHCFV 189 (276)
T ss_dssp CEEEEETTTTEEEEECTTSCEEEEEECS-SCCCEE--E---ECTTSCEEEECBTTSEEE
T ss_pred CEEEEecCCCEEEEECCCCCEEEEEECC-CCccce--e---EcCCCCEEEEeCCCCeEE
Confidence 5778888899999999999999999875 344332 1 224778888888876543
No 154
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=57.56 E-value=1.3e+02 Score=32.11 Aligned_cols=142 Identities=13% Similarity=0.203 Sum_probs=68.5
Q ss_pred eEEEEeeCCCcEEEEee---CCeEEEEEeccCC--CceEEEe-----eeeeeeeecC---ccccccccCccccc-ccCCC
Q 035748 286 RYILSADASGKIRVFKE---NGMVHGTAAMLSS--KPLVFLK-----QRLLFLTECG---AGSLDLRTMKLRET-ECEGL 351 (655)
Q Consensus 286 RYVlsaDasGrV~VFre---nGtl~G~aa~~~S--rplaFlk-----QrllfLTe~G---aaslDLrtm~vr~~-pCeGL 351 (655)
||+.+++.+|.|.+|+. .+.+-... .... +.++|=+ .+.++.+... +..+|..|+++... +..|.
T Consensus 209 r~lyv~~~dg~V~viD~~~~t~~~v~~i-~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~ 287 (567)
T 1qks_A 209 RYLFVIGRDGKVNMIDLWMKEPTTVAEI-KIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGM 287 (567)
T ss_dssp CEEEEEETTSEEEEEETTSSSCCEEEEE-ECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEE
T ss_pred CEEEEEcCCCeEEEEECCCCCCcEeEEE-ecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccc
Confidence 45555667788888886 45555555 3333 3455542 2344444332 23447777765432 32221
Q ss_pred --C------cccceeeeccccccceeeeeccCCcEEEEEEecCccccceEEeeeccccCCcccceeeeceeEEEEec--c
Q 035748 352 --N------NSLVRNYVFDATERSKAYGYTSEGDLIHVLLLGDVTNFKCRVRSKRKFDMSEPLAFQAIKGYLLVVCE--E 421 (655)
Q Consensus 352 --N------~S~i~syaFD~~~rsKaYG~T~~G~Li~v~l~gD~~~~~CrVRs~~k~d~~~pvalqaIKGYlLvas~--~ 421 (655)
+ ..++.+.++-.....-.+-+.+.|.+ .++=.-|..+++-.-....++ -..+.+..=.-|+|++++ +
T Consensus 288 ~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v-~~vd~~~~~~~~v~~i~~~~~--~~d~~~~pdgr~~~va~~~sn 364 (567)
T 1qks_A 288 TYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI-LLVDYTDLNNLKTTEISAERF--LHDGGLDGSHRYFITAANARN 364 (567)
T ss_dssp CTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE-EEEETTCSSEEEEEEEECCSS--EEEEEECTTSCEEEEEEGGGT
T ss_pred ccccccccCCCceEEEEEcCCCCEEEEEecCCCeE-EEEecCCCccceeeeeecccc--ccCceECCCCCEEEEEeCCCC
Confidence 1 12333333322222222333344543 333333333332111111111 113344445669999986 8
Q ss_pred eEEEEEeece
Q 035748 422 KIFVYNVSAQ 431 (655)
Q Consensus 422 ~V~VyNvTsq 431 (655)
+|.|+++.+.
T Consensus 365 ~V~ViD~~t~ 374 (567)
T 1qks_A 365 KLVVIDTKEG 374 (567)
T ss_dssp EEEEEETTTT
T ss_pred eEEEEECCCC
Confidence 8999999873
No 155
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=55.98 E-value=25 Score=36.72 Aligned_cols=58 Identities=19% Similarity=0.245 Sum_probs=42.8
Q ss_pred eEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEE
Q 035748 181 YVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKV 242 (655)
Q Consensus 181 Y~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV 242 (655)
++|.|...|.|.+.+.. |..+..+....+..++. +++ +. +...|+||..||.|.+.++
T Consensus 297 ~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~-vaf-SP--DG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 297 CAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSF-VKW-SG--TDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEEETTSCEEEEETTTCSEEEEECCC--CCCCE-EEE-CS--SSSEEEEECTTSCEEEEEE
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEE-EEE-CC--CCCEEEEEECCCcEEEecC
Confidence 57899899999999666 98887775444444443 565 34 8889999999999987653
No 156
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=55.20 E-value=1.2e+02 Score=27.19 Aligned_cols=50 Identities=10% Similarity=0.039 Sum_probs=28.9
Q ss_pred eeeeeeecCC---ccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecC
Q 035748 153 QFVSAVKLES---DPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTM 207 (655)
Q Consensus 153 ~fvSAvklda---~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~ 207 (655)
+.+.-++++. .+.++.+-|- |- ..|+++...|.|++++.+ |.++..+...
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~s~d----g~-~l~v~~~~~~~v~~~d~~~~~~~~~~~~~ 75 (337)
T 1pby_B 22 AVDKVITIADAGPTPMVPMVAPG----GR-IAYATVNKSESLVKIDLVTGETLGRIDLS 75 (337)
T ss_dssp EEEEEEECTTCTTCCCCEEECTT----SS-EEEEEETTTTEEEEEETTTCCEEEEEECC
T ss_pred cEEEEEEcCCCCCCccceEEcCC----CC-EEEEEeCCCCeEEEEECCCCCeEeeEEcC
Confidence 3344444554 4566665553 21 234455567899999865 8877666543
No 157
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=54.18 E-value=58 Score=36.18 Aligned_cols=106 Identities=13% Similarity=0.139 Sum_probs=66.0
Q ss_pred ceeEEeecccceEEEEccCCce--------EEEEe---cCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEecCC
Q 035748 179 SKYVAVGDDKGRVFVFLRNGDV--------SVEFY---TMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPN 247 (655)
Q Consensus 179 skY~AVGD~~Grv~Vfs~~GDv--------l~E~~---T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~ 247 (655)
.+|+|+|.+.|.|.+++..+.. +-.+. .+-...|.+ +++. .+. +++|..|++|.+-.+-....
T Consensus 141 G~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~s-VawS----Pdg-Laass~D~tVrlWd~~~~~~ 214 (588)
T 2j04_A 141 ESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTH-IVWY----EDV-LVAALSNNSVFSMTVSASSH 214 (588)
T ss_dssp SSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEE-EEEE----TTE-EEEEETTCCEEEECCCSSSS
T ss_pred CCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEE-EEEc----CCc-EEEEeCCCeEEEEECCCCcc
Confidence 5799999999999999988653 33333 333578998 4653 344 88899999986544322110
Q ss_pred CCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeCCeEE
Q 035748 248 GEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKENGMVH 307 (655)
Q Consensus 248 gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFrenGtl~ 307 (655)
- +..+.+ . ......|..+-.+ | .+++++- +|.|.+|.-++...
T Consensus 215 ~--------~~~~tL---~-~~h~~~V~svaFs--g--~~LASa~-~~tIkLWd~~~~~~ 257 (588)
T 2j04_A 215 Q--------PVSRMI---Q-NASRRKITDLKIV--D--YKVVLTC-PGYVHKIDLKNYSI 257 (588)
T ss_dssp C--------CCEEEE---E-CCCSSCCCCEEEE--T--TEEEEEC-SSEEEEEETTTTEE
T ss_pred c--------cceeee---c-ccccCcEEEEEEE--C--CEEEEEe-CCeEEEEECCCCeE
Confidence 0 001112 0 1123456666665 4 6777764 69999999765444
No 158
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=50.26 E-value=2.1e+02 Score=28.60 Aligned_cols=142 Identities=11% Similarity=0.049 Sum_probs=74.8
Q ss_pred eEEEEEeecCceeEEEEeeC-CCcEEEEee-CCeEEEEEeccCCCc----eEEEeeeeeeeee--cCccccccccCcccc
Q 035748 274 VTLLEVHHIGRMRYILSADA-SGKIRVFKE-NGMVHGTAAMLSSKP----LVFLKQRLLFLTE--CGAGSLDLRTMKLRE 345 (655)
Q Consensus 274 Vt~LE~hrvGr~RYVlsaDa-sGrV~VFre-nGtl~G~aa~~~Srp----laFlkQrllfLTe--~GaaslDLrtm~vr~ 345 (655)
..-|+++ ++.=|+-..+- ...|+++.. .|.+-.+... ..++ +++..++|-.||. .=+-..|+.|+++..
T Consensus 45 tqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l-~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ 121 (262)
T 3nol_A 45 TEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL-GKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVR 121 (262)
T ss_dssp EEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC-CTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred cceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEec-CCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEE
Confidence 4456654 55335555443 348999987 5888888833 3343 5666788888883 334445999887542
Q ss_pred -cccCCCCcccceeeeccccccceeeeeccCCcEEEEEEecCccccceEEeeeccccCCccc----ceeeeceeEEEEe-
Q 035748 346 -TECEGLNNSLVRNYVFDATERSKAYGYTSEGDLIHVLLLGDVTNFKCRVRSKRKFDMSEPL----AFQAIKGYLLVVC- 419 (655)
Q Consensus 346 -~pCeGLN~S~i~syaFD~~~rsKaYG~T~~G~Li~v~l~gD~~~~~CrVRs~~k~d~~~pv----alqaIKGYlLvas- 419 (655)
.+..+ .| ...++|- .++|--+. .+-|++ -|+..++=.-+ ..-.+-..|+ -|+-+.|+|++.+
T Consensus 122 ti~~~~-eG---~glt~dg---~~L~~SdG-s~~i~~---iDp~T~~v~~~-I~V~~~g~~~~~lNELe~~~G~lyan~w 189 (262)
T 3nol_A 122 SFNYDG-EG---WGLTHND---QYLIMSDG-TPVLRF---LDPESLTPVRT-ITVTAHGEELPELNELEWVDGEIFANVW 189 (262)
T ss_dssp EEECSS-CC---CCEEECS---SCEEECCS-SSEEEE---ECTTTCSEEEE-EECEETTEECCCEEEEEEETTEEEEEET
T ss_pred EEECCC-Cc---eEEecCC---CEEEEECC-CCeEEE---EcCCCCeEEEE-EEeccCCccccccceeEEECCEEEEEEc
Confidence 23221 11 1222331 23333221 222332 24444432111 1100112243 2667799999887
Q ss_pred -cceEEEEEeec
Q 035748 420 -EEKIFVYNVSA 430 (655)
Q Consensus 420 -~~~V~VyNvTs 430 (655)
.+.|.|.+..+
T Consensus 190 ~~~~I~vIDp~t 201 (262)
T 3nol_A 190 QTNKIVRIDPET 201 (262)
T ss_dssp TSSEEEEECTTT
T ss_pred cCCeEEEEECCC
Confidence 37788888877
No 159
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=49.30 E-value=11 Score=27.61 Aligned_cols=21 Identities=52% Similarity=0.752 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 035748 62 HKLEELVRNLSDIVTKLESKF 82 (655)
Q Consensus 62 ~~leel~~~l~~~v~~le~~l 82 (655)
.||||=+|||..+|++|..++
T Consensus 2 srlee~~r~l~~ivq~lq~r~ 22 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQERL 22 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 367888888887777776543
No 160
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=46.37 E-value=2.1e+02 Score=30.90 Aligned_cols=128 Identities=17% Similarity=0.287 Sum_probs=0.0
Q ss_pred eeEEeecccceEEEEccC-CceEEEEecCCCCCeeEE----------------------------------EEeeeeecc
Q 035748 180 KYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAM----------------------------------VSYVSVYKN 224 (655)
Q Consensus 180 kY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm----------------------------------~SYlsvrRN 224 (655)
++++++|..|.||++++. |.++.........-.+.+ .|| +. ++
T Consensus 315 ~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~-dp-~~ 392 (668)
T 1kv9_A 315 KVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSF-NP-GT 392 (668)
T ss_dssp EEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEE-ET-TT
T ss_pred EEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceE-CC-CC
Q ss_pred eeEEE-----------------------------------eeecCceEEEEE------EEecCCCCCcchhhhhhccccc
Q 035748 225 ESVLV-----------------------------------TGHENGVILIHK------VYEKPNGEDWSSLVIENVGKYV 263 (655)
Q Consensus 225 eT~lV-----------------------------------TGHadG~V~~hr------V~Es~~gdD~~sLs~e~~r~~~ 263 (655)
..+.| ....+|.|.+.. +|+-+.+..+...++...+.+
T Consensus 393 g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~- 471 (668)
T 1kv9_A 393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNL- 471 (668)
T ss_dssp TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTE-
T ss_pred CEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCE-
Q ss_pred cccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee-CCeEEEEEeccCC----CceEE-EeeeeeeeeecCccc
Q 035748 264 ATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE-NGMVHGTAAMLSS----KPLVF-LKQRLLFLTECGAGS 335 (655)
Q Consensus 264 ~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre-nGtl~G~aa~~~S----rplaF-lkQrllfLTe~Gaas 335 (655)
|..++.+|.|.+|.. +|.+...+ ...+ .|+.+ ...++..-...|.+.
T Consensus 472 ------------------------vf~g~~dg~l~a~d~~tG~~l~~~-~~~~~~~~~p~~~~~~G~~yva~~~G~g~ 524 (668)
T 1kv9_A 472 ------------------------VFQGTAAGQMHAYSADKGEALWQF-EAQSGIVAAPMTFELAGRQYVAIMAGWGG 524 (668)
T ss_dssp ------------------------EEEECTTSEEEEEETTTCCEEEEE-ECSSCCCSCCEEEEETTEEEEEEEECCCS
T ss_pred ------------------------EEEECCcccchhhhhhcChhheEe-cCCCCcccCceEEEECCEEEEEEEecCCC
No 161
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=46.15 E-value=80 Score=32.65 Aligned_cols=119 Identities=14% Similarity=0.096 Sum_probs=68.4
Q ss_pred ceeeeeeecCCccceeeeccCCCCCCcceeEEeecccceEEEEccCCceEEEEecCCCCCeeEEEEeeeeecceeEEEee
Q 035748 152 FQFVSAVKLESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTG 231 (655)
Q Consensus 152 F~fvSAvklda~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTG 231 (655)
|+...-+.+.. |++++. +| ++++|| ..|.|++++-.--.-.........+|..+.. + .+. +++.
T Consensus 79 ~~~~~~~~lp~-V~~l~f------d~--~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~-~---~p~--~av~ 142 (388)
T 1xip_A 79 LTFKWEKEIPD-VIFVCF------HG--DQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKN-V---NNT--LVIL 142 (388)
T ss_dssp CCCSEEEECTT-EEEEEE------ET--TEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEE-C---SSE--EEEE
T ss_pred ccceEEeeCCC-eeEEEE------CC--CEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEe-c---CCC--EEEE
Confidence 44332334555 666665 44 677777 7799999975322122222333567766432 2 233 7778
Q ss_pred ecCceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeCCeE---EE
Q 035748 232 HENGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKENGMV---HG 308 (655)
Q Consensus 232 HadG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFrenGtl---~G 308 (655)
.+||+|.+-.|-+... + +. ...|+.+-...=| ++++-.+|+|++|+.++.. ..
T Consensus 143 ~~dG~L~v~dl~~~~~---------~---~~--------~~~Vs~v~WSpkG----~~vg~~dg~i~~~~~~~~~~~~k~ 198 (388)
T 1xip_A 143 NSVNDLSALDLRTKST---------K---QL--------AQNVTSFDVTNSQ----LAVLLKDRSFQSFAWRNGEMEKQF 198 (388)
T ss_dssp ETTSEEEEEETTTCCE---------E---EE--------EESEEEEEECSSE----EEEEETTSCEEEEEEETTEEEEEE
T ss_pred ECCCCEEEEEccCCcc---------c---cc--------cCCceEEEEcCCc----eEEEEcCCcEEEEcCCCccccccc
Confidence 9999998655432110 0 01 1246666666555 3445677999999997655 55
Q ss_pred EE
Q 035748 309 TA 310 (655)
Q Consensus 309 ~a 310 (655)
+.
T Consensus 199 ~I 200 (388)
T 1xip_A 199 EF 200 (388)
T ss_dssp EE
T ss_pred ee
Confidence 55
No 162
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=45.94 E-value=21 Score=35.00 Aligned_cols=56 Identities=13% Similarity=0.211 Sum_probs=38.3
Q ss_pred eeEEeecccceEEEEcc-CCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEE
Q 035748 180 KYVAVGDDKGRVFVFLR-NGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKV 242 (655)
Q Consensus 180 kY~AVGD~~Grv~Vfs~-~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV 242 (655)
..+++|+..|.|+++++ +|.++-.+.. .+|.+. .+..+..++++|..||.|.+...
T Consensus 10 ~~v~~gs~dg~v~a~d~~tG~~~W~~~~---~~~~s~----p~~~~g~~~v~~s~dg~l~a~d~ 66 (369)
T 2hz6_A 10 TLLFVSTLDGSLHAVSKRTGSIKWTLKE---DPVLQV----PTHVEEPAFLPDPNDGSLYTLGS 66 (369)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEEC---CCSCCC----C-----CCEEECTTTCCEEEC--
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEecC---CCceec----ceEcCCCEEEEeCCCCEEEEEEC
Confidence 46888999999999985 5999988876 344431 12246778888889999877654
No 163
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=45.05 E-value=1.9e+02 Score=26.74 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=17.5
Q ss_pred eceeEEEEecceEEEEEeece
Q 035748 411 IKGYLLVVCEEKIFVYNVSAQ 431 (655)
Q Consensus 411 IKGYlLvas~~~V~VyNvTsq 431 (655)
-.|.|+|++.+.|.+||...+
T Consensus 248 ~~G~lwv~~~~gv~~~~~~g~ 268 (305)
T 3dr2_A 248 RGGWLWSSSGTGVCVFDSDGQ 268 (305)
T ss_dssp TTSCEEECCSSEEEEECTTSC
T ss_pred CCCCEEEecCCcEEEECCCCC
Confidence 468999999999999998654
No 164
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=44.25 E-value=50 Score=30.92 Aligned_cols=51 Identities=8% Similarity=-0.037 Sum_probs=37.6
Q ss_pred cceEEEEccCCceEEEEecCCC---CCeeEEEEeeeeecceeEEEeeecCceEEEEEEE
Q 035748 188 KGRVFVFLRNGDVSVEFYTMSE---LPVTAMVSYVSVYKNESVLVTGHENGVILIHKVY 243 (655)
Q Consensus 188 ~Grv~Vfs~~GDvl~E~~T~~~---spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~ 243 (655)
.|+|++|+++|.++..+....+ ..++.+.. .+.++.||...++.|...++.
T Consensus 259 ~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-----~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 259 DPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-----HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp EEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-----ETTEEEEECSSCSEEEEEEC-
T ss_pred ccEEEEECCCCCEEEEEECCCCCccccceEEEE-----eCCEEEEeecCCCceEEEecc
Confidence 5889999999998887776543 33444321 477899999999999887764
No 165
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=42.85 E-value=2.2e+02 Score=26.86 Aligned_cols=57 Identities=18% Similarity=0.148 Sum_probs=35.7
Q ss_pred eeEEeecccceEEEEccC-CceEEEEecCC--------CCCeeEEEEeeeeecceeEEEeeecCceEEEEE
Q 035748 180 KYVAVGDDKGRVFVFLRN-GDVSVEFYTMS--------ELPVTAMVSYVSVYKNESVLVTGHENGVILIHK 241 (655)
Q Consensus 180 kY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~--------~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hr 241 (655)
..+.+++..|.|+.++++ |.++-++.... ..++.+... + -+..+ +.|..||.|.+..
T Consensus 54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~v-~v~~~~g~l~a~d 119 (376)
T 3q7m_A 54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVT---V-SGGHV-YIGSEKAQVYALN 119 (376)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEE---E-ETTEE-EEEETTSEEEEEE
T ss_pred CEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCce---E-eCCEE-EEEcCCCEEEEEE
Confidence 356677888999999885 99888877643 234443332 2 24444 4456677666554
No 166
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=42.56 E-value=2.3e+02 Score=26.90 Aligned_cols=119 Identities=21% Similarity=0.212 Sum_probs=60.0
Q ss_pred ccceeeeccCCCCCCcceeEEeecccceEEEEcc--CCceEEEEec-CCCCCeeEEEEeeeeeccee--EEEeee-----
Q 035748 163 DPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLR--NGDVSVEFYT-MSELPVTAMVSYVSVYKNES--VLVTGH----- 232 (655)
Q Consensus 163 ~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~--~GDvl~E~~T-~~~spVTAm~SYlsvrRNeT--~lVTGH----- 232 (655)
.++.+.+-| +| +|+++++.. .|.+++. +|.+...... ..+.|.. +.+..+.. +|++++
T Consensus 41 ~~~~~a~sp----dg--~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~-----~~~spdg~~l~~~~~~~~~~~ 108 (365)
T 1jof_A 41 PISWMTFDH----ER--KNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRA-----NDADTNTRAIFLLAAKQPPYA 108 (365)
T ss_dssp CCSEEEECT----TS--SEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGG-----GCTTSCCEEEEEEECSSTTCC
T ss_pred CCcEEEECC----CC--CEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCcc-----EEECCCCCEEEEEEecCCcce
Confidence 455555544 23 456666655 8998864 6876432221 1123322 23334444 455653
Q ss_pred --------cCceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeC-CCcEEEEeeC
Q 035748 233 --------ENGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADA-SGKIRVFKEN 303 (655)
Q Consensus 233 --------adG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDa-sGrV~VFren 303 (655)
.+|.|.++++-. +|. +. .....+ . ...+..+..+.+..=| ++++++|. +++|.+|+-+
T Consensus 109 ~~~~~~~~~~g~v~v~~~~~--~g~----~~-~~~~~~---~-~~~~~~~~~~~~spdG--~~l~~~~~~~~~v~~~~~~ 175 (365)
T 1jof_A 109 VYANPFYKFAGYGNVFSVSE--TGK----LE-KNVQNY---E-YQENTGIHGMVFDPTE--TYLYSADLTANKLWTHRKL 175 (365)
T ss_dssp EEEEEESSSCCEEEEEEECT--TCC----EE-EEEEEE---E-CCTTCCEEEEEECTTS--SEEEEEETTTTEEEEEEEC
T ss_pred eccceeecCCceEEEEccCC--CCc----Cc-ceEeeE---E-eCCCCcceEEEECCCC--CEEEEEcCCCCEEEEEEEC
Confidence 688887766632 221 10 001111 0 0123345554444334 46777774 6799999874
Q ss_pred --CeE
Q 035748 304 --GMV 306 (655)
Q Consensus 304 --Gtl 306 (655)
|.+
T Consensus 176 ~~g~~ 180 (365)
T 1jof_A 176 ASGEV 180 (365)
T ss_dssp TTSCE
T ss_pred CCCCE
Confidence 655
No 167
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=40.81 E-value=37 Score=34.71 Aligned_cols=64 Identities=16% Similarity=0.168 Sum_probs=42.7
Q ss_pred cceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEe-eecCceEEEEEE
Q 035748 178 HSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVT-GHENGVILIHKV 242 (655)
Q Consensus 178 lskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVT-GHadG~V~~hrV 242 (655)
+.-.+.||+..|.||.++++ |.++-.+.+...+|+.....- ..-.+..++|. ...||.|.++..
T Consensus 9 ~~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~-~~~~~~~~~vv~p~~dG~l~a~~~ 74 (339)
T 2be1_A 9 LSDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEP-SRLETYETLIIEPFGDGNIYYFNA 74 (339)
T ss_dssp EEEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCS-CTTTSSEEEEECCSTTTEEEEEET
T ss_pred eCCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCC-ccccCCcEEEEEECCCCEEEEEEC
Confidence 34578999999999999865 999999998733444332211 11123344433 379999988774
No 168
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=40.57 E-value=80 Score=32.63 Aligned_cols=63 Identities=6% Similarity=-0.055 Sum_probs=43.9
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILI 239 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~ 239 (655)
..++..++.+|.. +|+.++.|.|++++-. |.. ..+ ...|++ +|+ |.. . ++.|..||.|..
T Consensus 126 ~~~v~~i~~~~p~--------~av~~~dG~L~v~dl~~~~~-~~~----~~~Vs~-v~W-Spk-G---~~vg~~dg~i~~ 186 (388)
T 1xip_A 126 EKPVFQLKNVNNT--------LVILNSVNDLSALDLRTKST-KQL----AQNVTS-FDV-TNS-Q---LAVLLKDRSFQS 186 (388)
T ss_dssp SSCEEEEEECSSE--------EEEEETTSEEEEEETTTCCE-EEE----EESEEE-EEE-CSS-E---EEEEETTSCEEE
T ss_pred ecceeeEEecCCC--------EEEEECCCCEEEEEccCCcc-ccc----cCCceE-EEE-cCC-c---eEEEEcCCcEEE
Confidence 3445666666652 8999999999999665 554 332 346887 675 453 3 678999999988
Q ss_pred EEE
Q 035748 240 HKV 242 (655)
Q Consensus 240 hrV 242 (655)
...
T Consensus 187 ~~~ 189 (388)
T 1xip_A 187 FAW 189 (388)
T ss_dssp EEE
T ss_pred EcC
Confidence 744
No 169
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=38.88 E-value=4.1e+02 Score=28.79 Aligned_cols=126 Identities=15% Similarity=0.252 Sum_probs=0.0
Q ss_pred eeEEeecccceEEEEccC-CceEEEEecCCCCCeeEE-------------------------------------EEeeee
Q 035748 180 KYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAM-------------------------------------VSYVSV 221 (655)
Q Consensus 180 kY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm-------------------------------------~SYlsv 221 (655)
++++++|..|.||++++. |.++.........-.+.+ +|| +.
T Consensus 320 ~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~-dp 398 (689)
T 1yiq_A 320 KVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSY-NP 398 (689)
T ss_dssp EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEE-ET
T ss_pred EEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceE-CC
Q ss_pred ecceeEEEeeec-------------------------------------------CceEEEEEE------EecCCCCCcc
Q 035748 222 YKNESVLVTGHE-------------------------------------------NGVILIHKV------YEKPNGEDWS 252 (655)
Q Consensus 222 rRNeT~lVTGHa-------------------------------------------dG~V~~hrV------~Es~~gdD~~ 252 (655)
.++--++-+.|. +|.|.+-.+ |+-+++..|.
T Consensus 399 ~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~ 478 (689)
T 1yiq_A 399 DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFN 478 (689)
T ss_dssp TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCC
T ss_pred CCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCcc
Q ss_pred hhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEe-eCCeEEEEEeccC----CCceEEE---eee
Q 035748 253 SLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFK-ENGMVHGTAAMLS----SKPLVFL---KQR 324 (655)
Q Consensus 253 sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFr-enGtl~G~aa~~~----SrplaFl---kQr 324 (655)
.-.+...+.+ |..+..+|.|++|+ ++|.+.-.+ ... ..|+.|- ||.
T Consensus 479 ~g~~~taggl-------------------------vf~gt~dg~l~a~D~~tG~~lw~~-~~~~~~~~~p~ty~~~G~qy 532 (689)
T 1yiq_A 479 GGTLSTAGNL-------------------------VFEGSADGRVIAYAADTGEKLWEQ-PAASGVMAAPVTYSVDGEQY 532 (689)
T ss_dssp CCEEEETTTE-------------------------EEEECTTSEEEEEETTTCCEEEEE-ECSSCCCSCCEEEEETTEEE
T ss_pred CccceECCCE-------------------------EEEECCCCcEEEEECCCCccceee-eCCCCcccCceEEEECCEEE
Q ss_pred eeeeeecC
Q 035748 325 LLFLTECG 332 (655)
Q Consensus 325 llfLTe~G 332 (655)
|...+-.|
T Consensus 533 v~~~~G~g 540 (689)
T 1yiq_A 533 VTFMAGWG 540 (689)
T ss_dssp EEEEECCC
T ss_pred EEEEecCC
No 170
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=38.05 E-value=2.5e+02 Score=26.14 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=17.9
Q ss_pred eeEEeecccceEEEEccCCceEEEE
Q 035748 180 KYVAVGDDKGRVFVFLRNGDVSVEF 204 (655)
Q Consensus 180 kY~AVGD~~Grv~Vfs~~GDvl~E~ 204 (655)
+++.++...|+|+.++++|..+..+
T Consensus 31 ~~l~v~~~~~~i~~~~~~~~~~~~~ 55 (322)
T 2fp8_A 31 KGFYTSVQDGRVIKYEGPNSGFVDF 55 (322)
T ss_dssp SSEEEECTTSEEEEECCTTTCEEEE
T ss_pred CEEEEEcCCCeEEEECCCCCceEEE
Confidence 3455788889999999887544444
No 171
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=37.71 E-value=2.3e+02 Score=25.60 Aligned_cols=143 Identities=13% Similarity=0.168 Sum_probs=71.5
Q ss_pred eEEeec--ccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEecCCCCCcchhhhh
Q 035748 181 YVAVGD--DKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWSSLVIE 257 (655)
Q Consensus 181 Y~AVGD--~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e 257 (655)
++++++ ..|+|++++.+ |.++..+... ...+..+ + +..+...|+++..||.|.+ +.-..+.-
T Consensus 154 ~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~-~---~s~dg~~l~~~~~~~~i~~---~d~~~~~~------- 218 (353)
T 3vgz_A 154 TVYISGIGKESVIWVVDGGNIKLKTAIQNT-GKMSTGL-A---LDSEGKRLYTTNADGELIT---IDTADNKI------- 218 (353)
T ss_dssp EEEEEEESSSCEEEEEETTTTEEEEEECCC-CTTCCCC-E---EETTTTEEEEECTTSEEEE---EETTTTEE-------
T ss_pred EEEEEecCCCceEEEEcCCCCceEEEecCC-CCccceE-E---ECCCCCEEEEEcCCCeEEE---EECCCCeE-------
Confidence 344444 57899999876 6665555422 3334432 2 2234455555666888764 33111111
Q ss_pred hccccccccCCCCCCceEEEEEeecCceeEEEEee-CCCcEEEEee-CCeEEEEEeccCCCceEEEee-eeeeeeecCcc
Q 035748 258 NVGKYVATENGEEGLSVTLLEVHHIGRMRYILSAD-ASGKIRVFKE-NGMVHGTAAMLSSKPLVFLKQ-RLLFLTECGAG 334 (655)
Q Consensus 258 ~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaD-asGrV~VFre-nGtl~G~aa~~~SrplaFlkQ-rllfLTe~Gaa 334 (655)
.+.+.. ........+..+.+..-|+ ++.+++ .+|.|.+|.. +|.+-..........++|-.. +.+|++..+.+
T Consensus 219 -~~~~~~-~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~ 294 (353)
T 3vgz_A 219 -LSRKKL-LDDGKEHFFINISLDTARQ--RAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAG 294 (353)
T ss_dssp -EEEEEC-CCSSSCCCEEEEEEETTTT--EEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTT
T ss_pred -EEEEEc-CCCCCCcccceEEECCCCC--EEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCC
Confidence 111111 0111122344444544444 333334 4599999987 577766653333345666553 45666665433
Q ss_pred c---cccccCc
Q 035748 335 S---LDLRTMK 342 (655)
Q Consensus 335 s---lDLrtm~ 342 (655)
. .|+.+.+
T Consensus 295 ~v~~~d~~~~~ 305 (353)
T 3vgz_A 295 KVSVIDAKSYK 305 (353)
T ss_dssp EEEEEETTTTE
T ss_pred eEEEEECCCCe
Confidence 3 3555544
No 172
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=35.38 E-value=2.1e+02 Score=29.74 Aligned_cols=135 Identities=16% Similarity=0.176 Sum_probs=0.0
Q ss_pred CceeEEEEe--------eCCCcEEEEee-CCeEEEEEeccC---------CCceEEEe-eeeeeeeecC----ccccccc
Q 035748 283 GRMRYILSA--------DASGKIRVFKE-NGMVHGTAAMLS---------SKPLVFLK-QRLLFLTECG----AGSLDLR 339 (655)
Q Consensus 283 Gr~RYVlsa--------DasGrV~VFre-nGtl~G~aa~~~---------SrplaFlk-QrllfLTe~G----aaslDLr 339 (655)
|+.=||... +.++.|.||+. .+.+-++...+. -+.++|-. -+.||.+..+ +.-+|+.
T Consensus 89 G~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~ 168 (386)
T 3sjl_D 89 GSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLE 168 (386)
T ss_dssp SSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETT
T ss_pred CCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECC
Q ss_pred cCcccccc----cCCCCcccceeeeccccccceeeeeccCCcEEEEEEecCccccceEEeeeccccC-Ccccceee----
Q 035748 340 TMKLRETE----CEGLNNSLVRNYVFDATERSKAYGYTSEGDLIHVLLLGDVTNFKCRVRSKRKFDM-SEPLAFQA---- 410 (655)
Q Consensus 340 tm~vr~~p----CeGLN~S~i~syaFD~~~rsKaYG~T~~G~Li~v~l~gD~~~~~CrVRs~~k~d~-~~pvalqa---- 410 (655)
|.++..+- |.+ ..+...-++|.++.+|.++++-+.-+..- .....+.++. ..|+-...
T Consensus 169 t~~vv~tI~v~g~~~----------~~P~g~~~~~~~~~DG~~~~v~~~~~g~v---~~~~~~~~~~~~~~~~~~~~~~~ 235 (386)
T 3sjl_D 169 GKAFKRMLDVPDCYH----------IFPTAPDTFFMHCRDGSLAKVAFGTEGTP---EITHTEVFHPEDEFLINHPAYSQ 235 (386)
T ss_dssp TTEEEEEEECCSEEE----------EEEEETTEEEEEETTSCEEEEECCSSSCC---EEEECCCCSCTTSCBCSCCEEET
T ss_pred CCcEEEEEECCCcce----------eecCCCceeEEECCCCCEEEEECCCCCeE---EEeecceeccccccccccceeEc
Q ss_pred ece-eEEEEecceEEEEEeec
Q 035748 411 IKG-YLLVVCEEKIFVYNVSA 430 (655)
Q Consensus 411 IKG-YlLvas~~~V~VyNvTs 430 (655)
-.| ++|+.....|.|+|+++
T Consensus 236 ~dG~~~~vs~~g~V~v~d~~~ 256 (386)
T 3sjl_D 236 KAGRLVWPTYTGKIHQIDLSS 256 (386)
T ss_dssp TTTEEEEEBTTSEEEEEECTT
T ss_pred CCCcEEEEeCCCEEEEEECCC
No 173
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=34.92 E-value=3.3e+02 Score=26.52 Aligned_cols=88 Identities=7% Similarity=0.111 Sum_probs=53.5
Q ss_pred ccccccceeeeeee----cCCccceeeeccCCCCCCcceeEEeecccceEEEEccCCceEEEEecCCCCCeeEEEEeeee
Q 035748 146 PFWSERFQFVSAVK----LESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRNGDVSVEFYTMSELPVTAMVSYVSV 221 (655)
Q Consensus 146 p~WSerF~fvSAvk----lda~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~GDvl~E~~T~~~spVTAm~SYlsv 221 (655)
..|-...+.+.=.| +..++..|.+-|.. .+.|||.|+.++||.++.+|+++-.+.-....-.-. ++|+
T Consensus 7 ~~~l~~y~~~~~~~~l~g~~~~lSGla~~~~~-----~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EG-Ia~~-- 78 (255)
T 3qqz_A 7 AASFQNYHATIDGKEIAGITNNISSLTWSAQS-----NTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLET-IEYI-- 78 (255)
T ss_dssp --CCTTCEEEEEEEECTTCCSCEEEEEEETTT-----TEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEEE-EEEC--
T ss_pred ccCccceEEEEeceECCCcccCcceeEEeCCC-----CEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChHH-eEEe--
Confidence 45665555554432 24568888888753 479999999999999999999887775432222333 3443
Q ss_pred ecceeEEEeeecCceEEEEEE
Q 035748 222 YKNESVLVTGHENGVILIHKV 242 (655)
Q Consensus 222 rRNeT~lVTGHadG~V~~hrV 242 (655)
.+..++|+-=.++.+.+..+
T Consensus 79 -~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 79 -GDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp -STTEEEEEETTTTEEEEEEE
T ss_pred -CCCEEEEEECCCCcEEEEEc
Confidence 34456555333455554443
No 174
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=31.99 E-value=3.6e+02 Score=26.09 Aligned_cols=108 Identities=16% Similarity=0.207 Sum_probs=55.1
Q ss_pred ceEEEe-eeeeeeeecC----ccccccccCcccc--cccCCCCcccceeeeccccccceeeeeccCCcEEEEEEecCccc
Q 035748 317 PLVFLK-QRLLFLTECG----AGSLDLRTMKLRE--TECEGLNNSLVRNYVFDATERSKAYGYTSEGDLIHVLLLGDVTN 389 (655)
Q Consensus 317 plaFlk-QrllfLTe~G----aaslDLrtm~vr~--~pCeGLN~S~i~syaFD~~~rsKaYG~T~~G~Li~v~l~gD~~~ 389 (655)
-++|=+ .+.|+.+..+ +...|+.+.++.. .+|.|.-+ ..+.+....+.+.++.+|.++.+-+..|...
T Consensus 112 ~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~-----v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~ 186 (361)
T 2oiz_A 112 LFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWS-----VIPQPNRPRSFMTICGDGGLLTINLGEDGKV 186 (361)
T ss_dssp GEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEE-----EEECTTSSSEEEEEETTSSEEEEEECTTSSE
T ss_pred eEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcce-----eEEcCCCCeeEEEECCCCcEEEEEECCCCcE
Confidence 345443 3456655433 3445887766543 33333211 2234444567788889998887666544321
Q ss_pred cceEEeeeccccCC-cccceeee---ceeEEEEecceEEEEEeec
Q 035748 390 FKCRVRSKRKFDMS-EPLAFQAI---KGYLLVVCEEKIFVYNVSA 430 (655)
Q Consensus 390 ~~CrVRs~~k~d~~-~pvalqaI---KGYlLvas~~~V~VyNvTs 430 (655)
. -+......++.. .|+.+... +.++++.....|.|++++.
T Consensus 187 ~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~ 230 (361)
T 2oiz_A 187 A-SQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSG 230 (361)
T ss_dssp E-EEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSS
T ss_pred e-eeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecC
Confidence 1 122222223332 23332221 3566666557799999865
No 175
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=31.98 E-value=3.6e+02 Score=26.09 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=16.1
Q ss_pred eeEEEEecceEEEEEeece
Q 035748 413 GYLLVVCEEKIFVYNVSAQ 431 (655)
Q Consensus 413 GYlLvas~~~V~VyNvTsq 431 (655)
-||++++...|.||++.+.
T Consensus 317 ~~l~v~n~~~v~v~D~~t~ 335 (361)
T 2oiz_A 317 NLMLTLDGGNVNVYDISQP 335 (361)
T ss_dssp TEEEEECSSCEEEEECSSS
T ss_pred CEEEEeCCCeEEEEECCCC
Confidence 3899999889999998763
No 176
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=31.94 E-value=4.5e+02 Score=27.37 Aligned_cols=59 Identities=20% Similarity=0.164 Sum_probs=31.6
Q ss_pred ceeeeeccCCcEEEEEEe--cCccccceEEeeeccccCCc---ccceeeeceeEEEEecceEEEEEee
Q 035748 367 SKAYGYTSEGDLIHVLLL--GDVTNFKCRVRSKRKFDMSE---PLAFQAIKGYLLVVCEEKIFVYNVS 429 (655)
Q Consensus 367 sKaYG~T~~G~Li~v~l~--gD~~~~~CrVRs~~k~d~~~---pvalqaIKGYlLvas~~~V~VyNvT 429 (655)
..+|-...+|++...-|. +++.... +-.|++.+.+ ..+.---.|+|||+-++ +-||-..
T Consensus 144 ~yafV~~k~G~~~q~~l~~~~~g~~~~---~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd-~GIw~~d 207 (355)
T 3amr_A 144 YYAMVTGKEGEFEQYELKADKNGYISG---KKVRAFKMNSQTEGMAADDEYGRLYIAEED-EAIWKFS 207 (355)
T ss_dssp EEEEEECSSSEEEEEEEEECTTSCEEE---EEEEEEECSSCEEEEEEETTTTEEEEEETT-TEEEEEE
T ss_pred EEEEEECCCCeEEEEEEEeCCCCcccc---eEEEEecCCCCcceEEEcCCCCeEEEeccc-ceEEEEe
Confidence 346666777876663332 3332222 3334454422 23333357999998885 4455554
No 177
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=30.54 E-value=4.2e+02 Score=27.58 Aligned_cols=127 Identities=15% Similarity=0.142 Sum_probs=66.6
Q ss_pred CCcEEEEee-CCeEEEEEecc---------CCCceEEEe-eeeeeeeecC----ccccccccCccc-ccccCCCCcccce
Q 035748 294 SGKIRVFKE-NGMVHGTAAML---------SSKPLVFLK-QRLLFLTECG----AGSLDLRTMKLR-ETECEGLNNSLVR 357 (655)
Q Consensus 294 sGrV~VFre-nGtl~G~aa~~---------~SrplaFlk-QrllfLTe~G----aaslDLrtm~vr-~~pCeGLN~S~i~ 357 (655)
++.|.|++. .+.+-+....+ .-..++|=. -+.||.+... +.-+|+.|+++. ..+..|.
T Consensus 148 ~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~------ 221 (426)
T 3c75_H 148 TDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC------ 221 (426)
T ss_dssp EEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE------
T ss_pred CCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc------
Confidence 445666654 35555544222 112344443 2455555432 456699988753 3443332
Q ss_pred eeeccccccceeeeeccCCcEEEEEEecCccccceEEeeeccccCC-cccceee-----eceeEEEEecceEEEEEeece
Q 035748 358 NYVFDATERSKAYGYTSEGDLIHVLLLGDVTNFKCRVRSKRKFDMS-EPLAFQA-----IKGYLLVVCEEKIFVYNVSAQ 431 (655)
Q Consensus 358 syaFD~~~rsKaYG~T~~G~Li~v~l~gD~~~~~CrVRs~~k~d~~-~pvalqa-----IKGYlLvas~~~V~VyNvTsq 431 (655)
....+...-.++.++.+|.++++-+ +.....-+.. ..++++ .|+.+.. -++++++.....|.|.|+..+
T Consensus 222 -~~~~p~g~~~~v~~~~dG~~~~V~~--~~~~v~~~~~--~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~ 296 (426)
T 3c75_H 222 -YHIFPASPTVFYMNCRDGSLARVDF--ADGETKVTNT--EVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAE 296 (426)
T ss_dssp -EEEEEEETTEEEEEETTSSEEEEEC--CTTCCEEEEC--CCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSS
T ss_pred -eeeccCCCcEEEEEcCCCCEEEEEC--CCCcEEEEee--eeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCC
Confidence 1122333456788999999988766 3333321211 333442 2433222 256677766678999998653
No 178
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=29.11 E-value=3.2e+02 Score=24.56 Aligned_cols=138 Identities=9% Similarity=-0.058 Sum_probs=0.0
Q ss_pred ceeEEEeeecCceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEee-
Q 035748 224 NESVLVTGHENGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKE- 302 (655)
Q Consensus 224 NeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFre- 302 (655)
+..++|++..||.|.+..+.. ++....-.......+..+.+..=|+.-|+.. ..+|.|.+|..
T Consensus 10 ~~~~~v~~~~~~~v~~~d~~~---------------~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~-~~~~~i~~~d~~ 73 (349)
T 1jmx_B 10 GHEYMIVTNYPNNLHVVDVAS---------------DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLN-NHYGDIYGIDLD 73 (349)
T ss_dssp TCEEEEEEETTTEEEEEETTT---------------TEEEEEEECSSCCSSCEEEECTTSSEEEEEE-TTTTEEEEEETT
T ss_pred CCEEEEEeCCCCeEEEEECCC---------------CcEEEEEecCCCCCCceeEECCCCCEEEEEe-CCCCcEEEEeCC
Q ss_pred CCeEEEEEeccC--------CCceEEEe-eeeeeeee--------------cCccccccccCcccccccCCCCcccceee
Q 035748 303 NGMVHGTAAMLS--------SKPLVFLK-QRLLFLTE--------------CGAGSLDLRTMKLRETECEGLNNSLVRNY 359 (655)
Q Consensus 303 nGtl~G~aa~~~--------SrplaFlk-QrllfLTe--------------~GaaslDLrtm~vr~~pCeGLN~S~i~sy 359 (655)
+|.+-....... ...++|-. -+.++.+. .-+...|+.+.+.....-..-....+...
T Consensus 74 t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 153 (349)
T 1jmx_B 74 TCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLM 153 (349)
T ss_dssp TTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCE
T ss_pred CCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccce
Q ss_pred eccccccceeeeeccCCcEEEEE
Q 035748 360 VFDATERSKAYGYTSEGDLIHVL 382 (655)
Q Consensus 360 aFD~~~rsKaYG~T~~G~Li~v~ 382 (655)
+|++..+ +|-...+ |+++
T Consensus 154 ~~s~dg~--l~~~~~~---i~~~ 171 (349)
T 1jmx_B 154 RAADDGS--LYVAGPD---IYKM 171 (349)
T ss_dssp EECTTSC--EEEESSS---EEEE
T ss_pred eECCCCc--EEEccCc---EEEE
No 179
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=27.82 E-value=3.4e+02 Score=24.48 Aligned_cols=176 Identities=7% Similarity=-0.014 Sum_probs=81.5
Q ss_pred EEEeeCCCcEEEEeeCCeEEEEEeccC--CCceEEEeeeeeeeeecCccccccccCcccccccCCCCcccceeeeccccc
Q 035748 288 ILSADASGKIRVFKENGMVHGTAAMLS--SKPLVFLKQRLLFLTECGAGSLDLRTMKLRETECEGLNNSLVRNYVFDATE 365 (655)
Q Consensus 288 VlsaDasGrV~VFrenGtl~G~aa~~~--SrplaFlkQrllfLTe~GaaslDLrtm~vr~~pCeGLN~S~i~syaFD~~~ 365 (655)
|.++..+|.|..|..+|.+.-...... ...+++-++..+|++..|.-.+|...-..+...- ....+.+.++|..
T Consensus 150 l~vgt~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~d~~g~l~v~t~~l~~~d~~g~~~~~~~~---~~~~~~~~~~~~~- 225 (330)
T 3hxj_A 150 IYVGSNDNYLYAINPDGTEKWRFKTNDAITSAASIGKDGTIYFGSDKVYAINPDGTEKWNFYA---GYWTVTRPAISED- 225 (330)
T ss_dssp EEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTCCEEEESSSEEEECTTSCEEEEECC---SSCCCSCCEECTT-
T ss_pred EEEEcCCCEEEEECCCCCEeEEEecCCCceeeeEEcCCCEEEEEeCEEEEECCCCcEEEEEcc---CCcceeceEECCC-
Confidence 344445566666666655433331111 1223322445555555777777833333444332 2233555555543
Q ss_pred cceeeeeccCCcEEEEEEecCccccceEEeeeccccCCccccee-eeceeEEEEecc-eEEEEEeeceeeeccCCCcccc
Q 035748 366 RSKAYGYTSEGDLIHVLLLGDVTNFKCRVRSKRKFDMSEPLAFQ-AIKGYLLVVCEE-KIFVYNVSAQHYVRSGGPRLLF 443 (655)
Q Consensus 366 rsKaYG~T~~G~Li~v~l~gD~~~~~CrVRs~~k~d~~~pvalq-aIKGYlLvas~~-~V~VyNvTsq~y~Rv~~PR~Lf 443 (655)
++.|--|.+|.|... |.. .-.++...... ...-++. .-.|.|+|++.+ .|.+||.+.+ .+.
T Consensus 226 -g~l~v~t~~~gl~~~----~~~--g~~~~~~~~~~-~~~~~~~~~~~g~l~v~t~~ggl~~~d~~g~---------~~~ 288 (330)
T 3hxj_A 226 -GTIYVTSLDGHLYAI----NPD--GTEKWRFKTGK-RIESSPVIGNTDTIYFGSYDGHLYAINPDGT---------EKW 288 (330)
T ss_dssp -SCEEEEETTTEEEEE----CTT--SCEEEEEECSS-CCCSCCEECTTSCEEEECTTCEEEEECTTSC---------EEE
T ss_pred -CeEEEEcCCCeEEEE----CCC--CCEeEEeeCCC-CccccceEcCCCeEEEecCCCCEEEECCCCc---------EEE
Confidence 366666665554442 221 11222222111 1111122 237999999987 8999986322 111
Q ss_pred ccChHHHHHhhccccccccccccccccCCceEEecCCceEEEeeCCcEEEEEecCCCcccC
Q 035748 444 SAGLDEIRSSFLNYQVMDVDVNDEKRRSVPLIASDRDKLLVLGLGGGYVGMYRSNLPVFKG 504 (655)
Q Consensus 444 sa~L~~i~s~Fl~~~~~~~~~~~~~~a~~PLIASdRekLVVlglgdGyVa~YrS~LPv~kp 504 (655)
...+. . ..-..| +.|.+.-+.++-.+|.+-+++....-.++
T Consensus 289 ~~~~~----------~--------~~~~~~--~~d~~g~l~~gt~~G~~~~~~~~~~~~~~ 329 (330)
T 3hxj_A 289 NFETG----------S--------WIIATP--VIDENGTIYFGTRNGKFYALFNLEHHHHH 329 (330)
T ss_dssp EEECS----------S--------CCCSCC--EECTTCCEEEECTTSCEEEEEC-------
T ss_pred EEEcC----------C--------ccccce--EEcCCCEEEEEcCCCeEEEEecccccccC
Confidence 11110 0 111122 23445556668889999998887765543
No 180
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=27.11 E-value=1.8e+02 Score=30.12 Aligned_cols=58 Identities=12% Similarity=0.137 Sum_probs=38.1
Q ss_pred eEEeecccc--eEEEEccCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCc--eEEEEEE
Q 035748 181 YVAVGDDKG--RVFVFLRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENG--VILIHKV 242 (655)
Q Consensus 181 Y~AVGD~~G--rv~Vfs~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG--~V~~hrV 242 (655)
++++++..| +||.++.+|. +.. -|.....|+.+.++ +. .++.+++++..|| .+.+.++
T Consensus 350 ~~~~~~~~g~~~l~~~~~~~~-~~~-l~~~~~~v~~~~~~-s~-dg~~l~~~~~~~~~~~~~l~~~ 411 (741)
T 2ecf_A 350 ILWSSERTGFQHLYRIDSKGK-AAA-LTHGNWSVDELLAV-DE-KAGLAYFRAGIESARESQIYAV 411 (741)
T ss_dssp EEEEECTTSSCEEEEECSSSC-EEE-SCCSSSCEEEEEEE-ET-TTTEEEEEECSSCTTCBEEEEE
T ss_pred EEEEecCCCccEEEEEcCCCC-eee-eeecceEEEeEeEE-eC-CCCEEEEEEeCCCCceEEEEEE
Confidence 677777777 6666676777 433 34456778876554 34 3567888888887 6665554
No 181
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=24.62 E-value=1.6e+02 Score=30.69 Aligned_cols=52 Identities=13% Similarity=0.223 Sum_probs=30.8
Q ss_pred cceEEEEccCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEe
Q 035748 188 KGRVFVFLRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYE 244 (655)
Q Consensus 188 ~Grv~Vfs~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~E 244 (655)
.=+++-|+++|+.+..+. .-...|+. +++..+-=+...|++|..|++|. ||.
T Consensus 158 ~V~~~~~s~dG~~~~s~~-~~~~~v~~-l~fs~~~g~~~~LaSgS~D~TIk---IWD 209 (356)
T 2w18_A 158 QVEVMTFAEDGGGKENQF-LMPPEETI-LTFAEVQGMQEALLGTTIMNNIV---IWN 209 (356)
T ss_dssp EEEEEEECTTSCEEEEEE-ECCCSSCE-EEEEEEETSTTEEEEEETTSEEE---EEE
T ss_pred cEEEEEECCCCceeeeec-cCCCceee-EEeeccCCCCceEEEecCCCcEE---EEE
Confidence 334555566777555433 22445554 44433334567899999999985 565
No 182
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=22.83 E-value=3.9e+02 Score=23.44 Aligned_cols=135 Identities=12% Similarity=0.079 Sum_probs=66.9
Q ss_pred eEEeecccceEEEEccCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEEEEEEecCCCCCcchhhhhhcc
Q 035748 181 YVAVGDDKGRVFVFLRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWSSLVIENVG 260 (655)
Q Consensus 181 Y~AVGD~~Grv~Vfs~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~~r 260 (655)
.+++....|.|++++++|.+..-........+..|. +-.+..+.++...++.|.... ++|. ..
T Consensus 112 l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~----~~~~g~l~v~~~~~~~i~~~~----~~g~-~~-------- 174 (299)
T 2z2n_A 112 IWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFIT----LGSDNALWFTENQNNAIGRIT----ESGD-IT-------- 174 (299)
T ss_dssp EEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEE----ECTTSCEEEEETTTTEEEEEC----TTCC-EE--------
T ss_pred EEEEecCCceEEEECCCCCEEEecCCCCCCCCceEE----EcCCCCEEEEeCCCCEEEEEc----CCCc-EE--------
Confidence 333344467899998887754322222233344432 234567888877777664432 1111 10
Q ss_pred ccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeCCeEEEEEecc--CCCc--eEEEeeeeeeeeecC---c
Q 035748 261 KYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKENGMVHGTAAML--SSKP--LVFLKQRLLFLTECG---A 333 (655)
Q Consensus 261 ~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFrenGtl~G~aa~~--~Srp--laFlkQrllfLTe~G---a 333 (655)
.+ ........+..+.+..-|+ ..++...+++|.+|..+|.+.... .+ ...| +++-++.-+|++..+ .
T Consensus 175 ~~---~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~g~~~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~~~~i 248 (299)
T 2z2n_A 175 EF---KIPTPASGPVGITKGNDDA--LWFVEIIGNKIGRITTSGEITEFK-IPTPNARPHAITAGAGIDLWFTEWGANKI 248 (299)
T ss_dssp EE---ECSSTTCCEEEEEECTTSS--EEEEETTTTEEEEECTTCCEEEEE-CSSTTCCEEEEEECSTTCEEEEETTTTEE
T ss_pred Ee---eCCCCCCcceeEEECCCCC--EEEEccCCceEEEECCCCcEEEEE-CCCCCCCceeEEECCCCCEEEeccCCceE
Confidence 11 0011122345555554443 233333578899998887765432 22 1333 333345557777643 3
Q ss_pred ccccc
Q 035748 334 GSLDL 338 (655)
Q Consensus 334 aslDL 338 (655)
..+|+
T Consensus 249 ~~~d~ 253 (299)
T 2z2n_A 249 GRLTS 253 (299)
T ss_dssp EEEET
T ss_pred EEECC
Confidence 34454
No 183
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=22.63 E-value=5.7e+02 Score=25.27 Aligned_cols=175 Identities=15% Similarity=0.077 Sum_probs=81.8
Q ss_pred EEEee-CCCcEEEEeeCCeEEEEEecc---CCCceEEE-eeeeeeeeecCcccc---ccccCcccccccCCCCcccceee
Q 035748 288 ILSAD-ASGKIRVFKENGMVHGTAAML---SSKPLVFL-KQRLLFLTECGAGSL---DLRTMKLRETECEGLNNSLVRNY 359 (655)
Q Consensus 288 VlsaD-asGrV~VFrenGtl~G~aa~~---~SrplaFl-kQrllfLTe~Gaasl---DLrtm~vr~~pCeGLN~S~i~sy 359 (655)
|..+| .+++|..+..+|+..-+.... ...-|++= ..+-|+.|.++...+ |+..-..+...=++| ..+...
T Consensus 130 ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l--~~P~gi 207 (386)
T 3v65_B 130 VFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSL--EKPRAI 207 (386)
T ss_dssp EEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSC--SCEEEE
T ss_pred EEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCC--CCCcEE
Confidence 33445 457788888777643332111 12346655 356777887765443 333211111111222 235566
Q ss_pred eccccccceeeeeccCC-cEEEEEEecCccccceEEeeeccccCCcccceeeeceeEEEEec--ceEEEEEeeceeeecc
Q 035748 360 VFDATERSKAYGYTSEG-DLIHVLLLGDVTNFKCRVRSKRKFDMSEPLAFQAIKGYLLVVCE--EKIFVYNVSAQHYVRS 436 (655)
Q Consensus 360 aFD~~~rsKaYG~T~~G-~Li~v~l~gD~~~~~CrVRs~~k~d~~~pvalqaIKGYlLvas~--~~V~VyNvTsq~y~Rv 436 (655)
++|+... +.|-..... .-|+.+ ..|+.... +-....+..-..+++-.-.|+|+++.. ..|.+++...+
T Consensus 208 avdp~~g-~ly~td~~~~~~I~r~-~~dG~~~~--~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~----- 278 (386)
T 3v65_B 208 ALHPMEG-TIYWTDWGNTPRIEAS-SMDGSGRR--IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS----- 278 (386)
T ss_dssp EEETTTT-EEEEEECSSSCEEEEE-ETTSCSCE--EEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC-----
T ss_pred EEEcCCC-eEEEeccCCCCEEEEE-eCCCCCcE--EEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC-----
Confidence 6665543 333222111 222222 12222111 001111111224555557889999875 46777775431
Q ss_pred CCCccccccChHHHHHhhccccccccccccccccCCceEEecCCceEEEeeCCcEEEEEe
Q 035748 437 GGPRLLFSAGLDEIRSSFLNYQVMDVDVNDEKRRSVPLIASDRDKLLVLGLGGGYVGMYR 496 (655)
Q Consensus 437 ~~PR~Lfsa~L~~i~s~Fl~~~~~~~~~~~~~~a~~PLIASdRekLVVlglgdGyVa~Yr 496 (655)
..+.++..++ ..+- =||-+.++|++.-.+++-|-.+.
T Consensus 279 -~~~~~~~~~~--------~~P~--------------giav~~~~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 279 -HRKAVISQGL--------PHPF--------------AITVFEDSLYWTDWHTKSINSAN 315 (386)
T ss_dssp -SCEEEECSSC--------SSEE--------------EEEEETTEEEEEETTTTEEEEEE
T ss_pred -eeEEEEECCC--------CCce--------------EEEEECCEEEEeeCCCCeEEEEE
Confidence 2233333221 1111 13447778888888888877664
No 184
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=21.34 E-value=8.2e+02 Score=26.66 Aligned_cols=141 Identities=16% Similarity=0.205 Sum_probs=72.6
Q ss_pred cCceeEEEEeeC-CCcEEEEeeCCeEEEEEecc---CCCceEEEe-eeeeeeeecCc-ccc---ccccCcccccccCCCC
Q 035748 282 IGRMRYILSADA-SGKIRVFKENGMVHGTAAML---SSKPLVFLK-QRLLFLTECGA-GSL---DLRTMKLRETECEGLN 352 (655)
Q Consensus 282 vGr~RYVlsaDa-sGrV~VFrenGtl~G~aa~~---~SrplaFlk-QrllfLTe~Ga-asl---DLrtm~vr~~pCeGLN 352 (655)
+++.=|| +|. +++|.|++.+|...-+.... ..+.|++=. .+.||.|.+|. +.+ |+..-..+...=++|
T Consensus 463 ~~g~LY~--tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l- 539 (699)
T 1n7d_A 463 IHSNIYW--TDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENI- 539 (699)
T ss_dssp SSSBCEE--CCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSC-
T ss_pred eCCcEEE--EeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCC-
Confidence 4444344 453 57899998887755444111 124566433 57888888875 332 222111111000122
Q ss_pred cccceeeeccccccceeeeeccCCcEEEEEEecCccccceEEeeeccccCCcccceeeeceeEEEEec--ceEEEEEeec
Q 035748 353 NSLVRNYVFDATERSKAYGYTSEGDLIHVLLLGDVTNFKCRVRSKRKFDMSEPLAFQAIKGYLLVVCE--EKIFVYNVSA 430 (655)
Q Consensus 353 ~S~i~syaFD~~~rsKaYG~T~~G~Li~v~l~gD~~~~~CrVRs~~k~d~~~pvalqaIKGYlLvas~--~~V~VyNvTs 430 (655)
..+...+||+.. .+.|=......-|+++=. |+.+. ++......++..|.+|+--.++||++.. ..|.++|..+
T Consensus 540 -~~PnGlavd~~~-~~LY~aD~~~~~I~~~d~-dG~~~--~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~ 614 (699)
T 1n7d_A 540 -QWPNGITLDLLS-GRLYWVDSKLHSISSIDV-NGGNR--KTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLT 614 (699)
T ss_dssp -SSCCCEEECTTT-CCEEEEETTTTEEEEECS-SSSCC--EEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTT
T ss_pred -CCccEEEEeccC-CEEEEEecCCCeEEEEcc-CCCce--EEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccC
Confidence 234556777654 345544444444554322 33221 1111111234568888878889999875 5788888643
No 185
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=21.19 E-value=2.7e+02 Score=25.15 Aligned_cols=43 Identities=14% Similarity=0.182 Sum_probs=27.1
Q ss_pred cceEEEEccCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCc
Q 035748 188 KGRVFVFLRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENG 235 (655)
Q Consensus 188 ~Grv~Vfs~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG 235 (655)
.|+|++|+++|.++..+..... ++++ ++-.. ...++.|| .++|
T Consensus 236 ~~~v~~~~~~g~~~~~~~~~~~--~~~~-~f~~~-d~~~L~v~-t~~~ 278 (296)
T 3e5z_A 236 GDGVHVLTPDGDELGRVLTPQT--TSNL-CFGGP-EGRTLYMT-VSTE 278 (296)
T ss_dssp TTEEEEECTTSCEEEEEECSSC--CCEE-EEEST-TSCEEEEE-ETTE
T ss_pred CCeEEEECCCCCEEEEEECCCC--ceeE-EEECC-CCCEEEEE-cCCe
Confidence 7899999999998877776644 6663 33211 22345554 4454
No 186
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=20.90 E-value=6e+02 Score=24.89 Aligned_cols=133 Identities=13% Similarity=0.085 Sum_probs=0.0
Q ss_pred EEEEe-eCCCcEEEEee-CCeEEEEEeccCCCce----EEEeeeeeeee--ecCccccccccCcccccccCCCCccccee
Q 035748 287 YILSA-DASGKIRVFKE-NGMVHGTAAMLSSKPL----VFLKQRLLFLT--ECGAGSLDLRTMKLRETECEGLNNSLVRN 358 (655)
Q Consensus 287 YVlsa-DasGrV~VFre-nGtl~G~aa~~~Srpl----aFlkQrllfLT--e~GaaslDLrtm~vr~~pCeGLN~S~i~s 358 (655)
||.+. ..+++|.++.. .|.+-.+. ....+++ ++..++|-.+| +.-+...|+.|+++..+-=-| .-.-..
T Consensus 35 yvstg~~~~s~v~~iD~~tg~v~~~i-~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g--~~~g~g 111 (266)
T 2iwa_A 35 FESTGLYGRSSVRQVALQTGKVENIH-KMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ--MKDGWG 111 (266)
T ss_dssp EEEECSTTTCEEEEEETTTCCEEEEE-ECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECC--SSSCCE
T ss_pred EEECCCCCCCEEEEEECCCCCEEEEE-ecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECC--CCCeEE
Q ss_pred eeccccccceeeeeccCCcEEEEEEecCccccceEEeeeccccCCccc----ceeeeceeEEEEe--cceEEEEEeec
Q 035748 359 YVFDATERSKAYGYTSEGDLIHVLLLGDVTNFKCRVRSKRKFDMSEPL----AFQAIKGYLLVVC--EEKIFVYNVSA 430 (655)
Q Consensus 359 yaFD~~~rsKaYG~T~~G~Li~v~l~gD~~~~~CrVRs~~k~d~~~pv----alqaIKGYlLvas--~~~V~VyNvTs 430 (655)
.++| -.++| +++..+-|+++ |...++=.-+-.-. +...|+ .|+-+.|+|++.+ .+.|.|.++.+
T Consensus 112 lt~D---g~~l~-vs~gs~~l~vi---D~~t~~v~~~I~Vg-~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~~t 181 (266)
T 2iwa_A 112 LATD---GKILY-GSDGTSILYEI---DPHTFKLIKKHNVK-YNGHRVIRLNELEYINGEVWANIWQTDCIARISAKD 181 (266)
T ss_dssp EEEC---SSSEE-EECSSSEEEEE---CTTTCCEEEEEECE-ETTEECCCEEEEEEETTEEEEEETTSSEEEEEETTT
T ss_pred EEEC---CCEEE-EECCCCeEEEE---ECCCCcEEEEEEEC-CCCcccccceeEEEECCEEEEecCCCCeEEEEECCC
No 187
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=20.35 E-value=4.7e+02 Score=23.51 Aligned_cols=54 Identities=15% Similarity=0.271 Sum_probs=34.2
Q ss_pred eeEEeecccceEEEEccCCceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEE
Q 035748 180 KYVAVGDDKGRVFVFLRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILI 239 (655)
Q Consensus 180 kY~AVGD~~Grv~Vfs~~GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~ 239 (655)
..+.+|...|.|+.++++|..+-.+... ...+.++. +..+..+.+ |..+|.|..
T Consensus 108 ~~l~v~t~~~~l~~~d~~g~~~~~~~~~-~~~~~~~~----~~~~g~l~v-gt~~~~l~~ 161 (330)
T 3hxj_A 108 DILYVTSMDGHLYAINTDGTEKWRFKTK-KAIYATPI----VSEDGTIYV-GSNDNYLYA 161 (330)
T ss_dssp TEEEEECTTSEEEEECTTSCEEEEEECS-SCCCSCCE----ECTTSCEEE-ECTTSEEEE
T ss_pred CEEEEEecCCEEEEEcCCCCEEEEEcCC-CceeeeeE----EcCCCEEEE-EcCCCEEEE
Confidence 3567888889999999999988777654 22333321 233555444 556665544
Done!