Query 035749
Match_columns 405
No_of_seqs 723 out of 1582
Neff 12.3
Searched_HMMs 46136
Date Fri Mar 29 06:03:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035749.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035749hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 5.6E-63 1.2E-67 454.5 51.0 395 1-405 387-784 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 2.1E-62 4.5E-67 450.8 50.6 394 2-405 424-842 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 4E-57 8.6E-62 413.2 40.2 384 1-402 104-489 (697)
4 PLN03081 pentatricopeptide (PP 100.0 4.8E-56 1E-60 406.1 40.7 381 2-405 141-558 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 6.4E-56 1.4E-60 414.6 41.3 381 2-402 271-652 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 1.3E-55 2.8E-60 412.6 41.4 383 2-403 170-617 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.8E-30 3.9E-35 248.9 48.2 383 2-403 517-899 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3.2E-29 6.9E-34 240.3 48.3 385 2-404 449-866 (899)
9 TIGR00990 3a0801s09 mitochondr 100.0 7.2E-24 1.6E-28 192.1 46.4 369 21-403 129-570 (615)
10 KOG4626 O-linked N-acetylgluco 100.0 1.7E-25 3.6E-30 185.8 30.6 368 17-403 114-484 (966)
11 PRK11447 cellulose synthase su 100.0 1.2E-23 2.6E-28 202.6 47.5 385 1-402 286-738 (1157)
12 PRK11788 tetratricopeptide rep 99.9 5.9E-24 1.3E-28 183.5 34.1 306 64-376 39-354 (389)
13 PRK11788 tetratricopeptide rep 99.9 6.3E-24 1.4E-28 183.3 34.3 307 22-341 38-354 (389)
14 PRK15174 Vi polysaccharide exp 99.9 9.3E-23 2E-27 184.2 42.8 332 22-369 45-381 (656)
15 PRK15174 Vi polysaccharide exp 99.9 6.4E-23 1.4E-27 185.3 41.5 361 30-404 16-381 (656)
16 KOG4626 O-linked N-acetylgluco 99.9 7.3E-24 1.6E-28 176.2 30.9 366 1-385 133-500 (966)
17 TIGR00990 3a0801s09 mitochondr 99.9 2.4E-22 5.2E-27 182.2 43.7 355 1-369 144-571 (615)
18 PRK11447 cellulose synthase su 99.9 3.2E-22 6.9E-27 192.9 46.7 362 24-403 274-699 (1157)
19 PRK10049 pgaA outer membrane p 99.9 9.9E-22 2.1E-26 181.3 43.6 386 2-404 33-456 (765)
20 PRK10049 pgaA outer membrane p 99.9 2.8E-20 6E-25 171.8 42.6 383 4-404 2-422 (765)
21 PRK14574 hmsH outer membrane p 99.9 1.9E-18 4.2E-23 156.9 44.9 386 2-403 52-512 (822)
22 PRK14574 hmsH outer membrane p 99.9 7.7E-18 1.7E-22 153.1 44.7 372 18-402 33-477 (822)
23 PRK09782 bacteriophage N4 rece 99.9 1.9E-17 4.1E-22 153.7 44.0 216 179-403 490-705 (987)
24 KOG2002 TPR-containing nuclear 99.9 5.6E-18 1.2E-22 148.4 32.8 370 20-402 308-743 (1018)
25 KOG2076 RNA polymerase III tra 99.9 5E-17 1.1E-21 141.5 38.4 372 21-403 141-554 (895)
26 PRK09782 bacteriophage N4 rece 99.9 1.2E-16 2.7E-21 148.3 42.1 352 31-401 354-737 (987)
27 KOG2003 TPR repeat-containing 99.8 3.8E-18 8.3E-23 137.6 26.4 391 2-402 219-687 (840)
28 KOG1915 Cell cycle control pro 99.8 8E-16 1.7E-20 124.8 38.6 386 2-404 91-536 (677)
29 KOG4422 Uncharacterized conser 99.8 1.1E-15 2.3E-20 122.7 38.5 397 2-404 133-590 (625)
30 KOG4422 Uncharacterized conser 99.8 4.3E-16 9.3E-21 124.8 34.8 373 16-400 204-621 (625)
31 KOG2002 TPR-containing nuclear 99.8 3.7E-15 8E-20 131.1 39.6 389 1-403 147-558 (1018)
32 KOG2003 TPR repeat-containing 99.8 3.7E-16 8.1E-21 126.3 30.4 372 2-390 255-709 (840)
33 KOG1915 Cell cycle control pro 99.8 1.4E-14 3E-19 117.8 38.9 381 3-402 160-583 (677)
34 KOG2076 RNA polymerase III tra 99.8 2.9E-15 6.2E-20 130.8 37.5 355 1-366 156-552 (895)
35 PF13429 TPR_15: Tetratricopep 99.8 6E-19 1.3E-23 144.4 14.0 262 24-297 13-275 (280)
36 PRK10747 putative protoheme IX 99.8 5.7E-16 1.2E-20 132.5 32.3 282 108-401 97-387 (398)
37 TIGR00540 hemY_coli hemY prote 99.8 1.1E-15 2.5E-20 131.4 33.9 119 73-194 97-216 (409)
38 PF13429 TPR_15: Tetratricopep 99.8 2.7E-19 5.9E-24 146.4 11.1 261 135-402 13-275 (280)
39 PRK10747 putative protoheme IX 99.8 2.3E-15 5E-20 128.8 35.3 285 72-369 96-390 (398)
40 TIGR00540 hemY_coli hemY prote 99.8 2E-15 4.3E-20 129.9 33.9 288 29-330 94-395 (409)
41 KOG1155 Anaphase-promoting com 99.8 1.7E-14 3.7E-19 116.9 35.5 331 14-368 159-494 (559)
42 KOG0495 HAT repeat protein [RN 99.8 5.9E-14 1.3E-18 118.6 38.4 388 2-402 424-878 (913)
43 KOG0495 HAT repeat protein [RN 99.8 5.6E-14 1.2E-18 118.8 38.1 335 20-369 517-880 (913)
44 KOG1126 DNA-binding cell divis 99.8 3.2E-16 7E-21 132.3 24.3 290 73-373 332-624 (638)
45 COG2956 Predicted N-acetylgluc 99.8 6.7E-15 1.5E-19 113.7 28.3 290 73-369 48-347 (389)
46 COG2956 Predicted N-acetylgluc 99.8 1.6E-14 3.4E-19 111.7 29.4 297 22-332 39-345 (389)
47 KOG1155 Anaphase-promoting com 99.8 4.7E-14 1E-18 114.4 32.7 328 58-403 162-494 (559)
48 KOG1126 DNA-binding cell divis 99.7 1.5E-15 3.2E-20 128.4 24.0 285 33-334 333-620 (638)
49 COG3071 HemY Uncharacterized e 99.7 8.4E-14 1.8E-18 111.0 32.0 286 73-368 97-389 (400)
50 KOG0547 Translocase of outer m 99.7 8.7E-14 1.9E-18 113.6 32.0 366 22-402 118-564 (606)
51 KOG0547 Translocase of outer m 99.7 1.3E-13 2.9E-18 112.6 32.7 354 1-369 132-566 (606)
52 COG3071 HemY Uncharacterized e 99.7 1.2E-13 2.5E-18 110.2 30.8 286 107-402 96-388 (400)
53 PRK12370 invasion protein regu 99.7 3.5E-13 7.5E-18 120.6 30.0 266 17-299 254-535 (553)
54 PRK12370 invasion protein regu 99.7 2.3E-13 4.9E-18 121.7 28.6 249 1-265 278-536 (553)
55 KOG1173 Anaphase-promoting com 99.7 6.9E-13 1.5E-17 110.4 28.4 284 95-386 244-533 (611)
56 KOG1173 Anaphase-promoting com 99.7 3.2E-12 7E-17 106.5 31.5 366 22-402 144-516 (611)
57 KOG1129 TPR repeat-containing 99.7 3.6E-14 7.8E-19 110.0 18.5 230 168-403 226-457 (478)
58 TIGR02521 type_IV_pilW type IV 99.6 6.8E-13 1.5E-17 106.3 25.9 199 60-262 31-230 (234)
59 KOG1129 TPR repeat-containing 99.6 2E-13 4.4E-18 106.0 18.2 235 129-369 222-458 (478)
60 TIGR02521 type_IV_pilW type IV 99.6 3.2E-12 6.9E-17 102.4 26.1 204 92-299 28-232 (234)
61 KOG4162 Predicted calmodulin-b 99.6 2.2E-10 4.8E-15 99.3 37.0 383 8-403 312-782 (799)
62 PF12569 NARP1: NMDA receptor- 99.6 2.3E-11 4.9E-16 105.4 31.5 297 21-332 6-332 (517)
63 PF12569 NARP1: NMDA receptor- 99.6 1.8E-10 3.9E-15 100.0 34.4 299 62-369 6-334 (517)
64 KOG1156 N-terminal acetyltrans 99.6 8.1E-10 1.7E-14 94.1 37.0 364 18-404 74-468 (700)
65 KOG3785 Uncharacterized conser 99.6 7.7E-11 1.7E-15 93.0 28.7 349 25-402 63-488 (557)
66 KOG4318 Bicoid mRNA stability 99.6 5.4E-12 1.2E-16 110.6 24.3 255 5-285 11-286 (1088)
67 KOG1840 Kinesin light chain [C 99.5 1.4E-11 3E-16 105.5 24.2 244 19-262 199-477 (508)
68 KOG1840 Kinesin light chain [C 99.5 1E-11 2.3E-16 106.2 23.2 241 162-402 196-477 (508)
69 KOG1174 Anaphase-promoting com 99.5 3.9E-10 8.5E-15 90.8 30.1 271 91-369 228-500 (564)
70 KOG2047 mRNA splicing factor [ 99.5 6.2E-09 1.3E-13 88.8 38.6 389 3-402 157-613 (835)
71 KOG1174 Anaphase-promoting com 99.5 4.7E-10 1E-14 90.4 29.6 292 30-334 207-500 (564)
72 PRK11189 lipoprotein NlpI; Pro 99.5 1.6E-10 3.5E-15 94.9 27.4 223 31-265 38-266 (296)
73 KOG4318 Bicoid mRNA stability 99.5 6E-12 1.3E-16 110.3 19.6 90 82-183 12-101 (1088)
74 COG3063 PilF Tfp pilus assembl 99.5 1.8E-10 4E-15 85.5 24.4 201 60-264 35-236 (250)
75 COG3063 PilF Tfp pilus assembl 99.5 1.7E-10 3.7E-15 85.6 23.9 206 21-238 37-243 (250)
76 PRK11189 lipoprotein NlpI; Pro 99.5 1.2E-10 2.5E-15 95.8 25.8 214 2-230 44-266 (296)
77 KOG3785 Uncharacterized conser 99.5 2.6E-09 5.7E-14 84.6 30.8 351 1-379 74-498 (557)
78 KOG1156 N-terminal acetyltrans 99.5 9.8E-09 2.1E-13 87.7 35.6 359 22-403 11-433 (700)
79 KOG2376 Signal recognition par 99.4 1.3E-08 2.9E-13 86.0 35.2 195 23-230 16-254 (652)
80 KOG4340 Uncharacterized conser 99.4 1E-09 2.3E-14 84.7 26.4 303 14-332 5-337 (459)
81 KOG2047 mRNA splicing factor [ 99.4 2.4E-08 5.2E-13 85.4 36.5 371 20-403 103-578 (835)
82 KOG4162 Predicted calmodulin-b 99.4 7.4E-09 1.6E-13 90.2 33.6 358 2-369 341-783 (799)
83 cd05804 StaR_like StaR_like; a 99.4 5.6E-09 1.2E-13 89.3 33.1 201 19-228 6-214 (355)
84 cd05804 StaR_like StaR_like; a 99.4 8.4E-09 1.8E-13 88.2 33.4 309 58-369 4-336 (355)
85 KOG2376 Signal recognition par 99.4 5.2E-08 1.1E-12 82.5 36.2 381 1-400 29-516 (652)
86 KOG0548 Molecular co-chaperone 99.4 7.7E-09 1.7E-13 86.4 30.7 106 26-140 9-114 (539)
87 PRK04841 transcriptional regul 99.4 2.5E-08 5.5E-13 96.2 38.6 337 67-403 381-759 (903)
88 KOG0624 dsRNA-activated protei 99.4 1.9E-08 4.1E-13 79.5 30.0 303 18-334 37-370 (504)
89 KOG0548 Molecular co-chaperone 99.4 2.4E-08 5.2E-13 83.6 31.3 371 1-387 19-471 (539)
90 PF13041 PPR_2: PPR repeat fam 99.3 4.5E-12 9.8E-17 73.0 6.5 50 338-387 1-50 (50)
91 PF04733 Coatomer_E: Coatomer 99.3 2.6E-10 5.6E-15 92.3 17.8 251 103-369 9-265 (290)
92 PF13041 PPR_2: PPR repeat fam 99.3 8.5E-12 1.9E-16 71.8 6.5 49 93-141 1-49 (50)
93 KOG1125 TPR repeat-containing 99.3 2.2E-09 4.8E-14 90.4 22.7 226 25-263 291-526 (579)
94 KOG4340 Uncharacterized conser 99.3 2.3E-08 4.9E-13 77.5 25.8 312 2-332 28-373 (459)
95 PF04733 Coatomer_E: Coatomer 99.3 1.4E-09 3E-14 88.1 20.5 252 26-299 8-265 (290)
96 KOG1125 TPR repeat-containing 99.3 1.2E-09 2.7E-14 91.8 20.5 254 137-397 292-564 (579)
97 KOG0624 dsRNA-activated protei 99.3 2.1E-07 4.5E-12 73.8 30.3 305 57-369 35-370 (504)
98 KOG1914 mRNA cleavage and poly 99.3 5.4E-07 1.2E-11 75.8 36.0 375 16-402 17-499 (656)
99 KOG1128 Uncharacterized conser 99.2 1.6E-08 3.6E-13 87.6 22.0 222 161-403 394-615 (777)
100 PLN02789 farnesyltranstransfer 99.2 3.2E-07 7E-12 75.5 28.5 215 21-247 39-267 (320)
101 PRK04841 transcriptional regul 99.2 5.7E-07 1.2E-11 87.0 34.9 306 64-369 413-760 (903)
102 KOG1128 Uncharacterized conser 99.1 3E-08 6.5E-13 86.0 21.7 221 128-369 396-616 (777)
103 PLN02789 farnesyltranstransfer 99.1 8.8E-07 1.9E-11 73.0 28.3 214 63-282 40-267 (320)
104 KOG1070 rRNA processing protei 99.1 2.5E-07 5.5E-12 86.1 27.3 202 60-267 1458-1666(1710)
105 KOG1127 TPR repeat-containing 99.1 4.3E-07 9.3E-12 81.9 27.6 130 20-157 493-623 (1238)
106 KOG1070 rRNA processing protei 99.1 1.7E-07 3.7E-12 87.2 25.3 203 166-373 1459-1667(1710)
107 TIGR03302 OM_YfiO outer membra 99.1 5.5E-08 1.2E-12 77.7 20.2 188 18-229 32-232 (235)
108 KOG1127 TPR repeat-containing 99.1 5.7E-07 1.2E-11 81.1 26.5 182 35-226 474-656 (1238)
109 KOG0985 Vesicle coat protein c 99.0 4.7E-06 1E-10 75.6 30.4 297 58-400 982-1304(1666)
110 COG5010 TadD Flp pilus assembl 99.0 1.8E-07 3.9E-12 71.5 18.8 167 57-228 64-230 (257)
111 TIGR03302 OM_YfiO outer membra 99.0 1.8E-07 4E-12 74.7 20.4 188 57-264 30-232 (235)
112 KOG0985 Vesicle coat protein c 99.0 1.3E-05 2.8E-10 72.9 32.9 349 5-401 968-1338(1666)
113 PRK15359 type III secretion sy 99.0 3.5E-08 7.7E-13 71.4 14.5 95 22-124 27-121 (144)
114 KOG3617 WD40 and TPR repeat-co 99.0 1.3E-06 2.8E-11 77.5 26.1 334 18-401 725-1106(1416)
115 KOG3617 WD40 and TPR repeat-co 99.0 2.7E-06 5.8E-11 75.5 27.7 164 18-193 756-940 (1416)
116 PRK10370 formate-dependent nit 99.0 2E-07 4.3E-12 71.4 18.9 125 248-376 52-179 (198)
117 PRK14720 transcript cleavage f 99.0 1.2E-06 2.7E-11 80.5 25.8 171 57-264 28-198 (906)
118 PRK14720 transcript cleavage f 99.0 1.1E-06 2.4E-11 80.8 25.4 222 16-281 28-268 (906)
119 PRK10370 formate-dependent nit 99.0 9.2E-08 2E-12 73.2 15.8 158 26-205 23-183 (198)
120 COG5010 TadD Flp pilus assembl 99.0 6.1E-07 1.3E-11 68.6 19.8 165 94-263 66-230 (257)
121 KOG3081 Vesicle coat complex C 98.9 1.7E-06 3.8E-11 66.3 21.2 250 102-368 15-270 (299)
122 PRK15179 Vi polysaccharide bio 98.9 8.8E-07 1.9E-11 80.5 23.3 148 56-207 82-229 (694)
123 PRK15359 type III secretion sy 98.9 4E-07 8.7E-12 65.9 16.6 117 39-168 13-129 (144)
124 KOG3081 Vesicle coat complex C 98.9 8.2E-06 1.8E-10 62.7 23.5 250 26-298 15-270 (299)
125 PRK15179 Vi polysaccharide bio 98.9 1.8E-06 4E-11 78.5 22.9 148 231-382 82-229 (694)
126 KOG3616 Selective LIM binding 98.8 1.5E-05 3.2E-10 70.3 26.7 267 23-331 561-850 (1636)
127 KOG3060 Uncharacterized conser 98.8 5.8E-06 1.3E-10 63.0 20.8 195 30-230 23-221 (289)
128 TIGR02552 LcrH_SycD type III s 98.8 3.8E-07 8.1E-12 65.8 14.5 98 19-124 17-114 (135)
129 KOG3060 Uncharacterized conser 98.8 9.7E-06 2.1E-10 61.8 21.8 188 74-265 26-221 (289)
130 KOG3616 Selective LIM binding 98.8 1.4E-05 3.1E-10 70.4 25.0 47 307-362 884-930 (1636)
131 PF12854 PPR_1: PPR repeat 98.8 1E-08 2.2E-13 52.8 3.7 33 13-45 1-33 (34)
132 TIGR02552 LcrH_SycD type III s 98.8 7.6E-07 1.6E-11 64.3 15.0 110 41-159 5-114 (135)
133 PF12854 PPR_1: PPR repeat 98.7 2.5E-08 5.4E-13 51.4 4.0 32 370-401 2-33 (34)
134 COG4783 Putative Zn-dependent 98.7 2.5E-05 5.5E-10 65.5 22.0 140 209-369 315-454 (484)
135 COG4783 Putative Zn-dependent 98.7 4.3E-05 9.3E-10 64.1 22.9 119 105-227 316-435 (484)
136 PF09976 TPR_21: Tetratricopep 98.6 3.6E-06 7.9E-11 61.3 14.7 115 283-400 24-143 (145)
137 PF09976 TPR_21: Tetratricopep 98.6 8.3E-06 1.8E-10 59.4 16.1 125 238-366 15-144 (145)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 8.9E-06 1.9E-10 68.5 17.4 124 203-332 172-295 (395)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 1.5E-05 3.3E-10 67.2 18.4 126 96-227 170-295 (395)
140 KOG0550 Molecular chaperone (D 98.5 0.00017 3.6E-09 59.4 22.1 158 173-334 177-350 (486)
141 KOG2053 Mitochondrial inherita 98.5 0.0011 2.3E-08 60.3 38.7 74 30-112 54-127 (932)
142 cd00189 TPR Tetratricopeptide 98.4 8.1E-06 1.8E-10 54.7 11.4 96 21-124 2-97 (100)
143 TIGR02795 tol_pal_ybgF tol-pal 98.4 2E-05 4.3E-10 55.4 13.4 102 20-125 3-106 (119)
144 PRK15363 pathogenicity island 98.4 2E-05 4.3E-10 56.3 12.6 96 61-158 36-131 (157)
145 KOG2053 Mitochondrial inherita 98.4 0.0019 4E-08 58.8 38.4 225 29-264 19-255 (932)
146 KOG1914 mRNA cleavage and poly 98.3 0.0013 2.9E-08 56.3 36.4 151 216-369 347-501 (656)
147 PF10037 MRP-S27: Mitochondria 98.3 1.7E-05 3.7E-10 67.2 13.5 124 265-388 61-186 (429)
148 PF12895 Apc3: Anaphase-promot 98.3 1.7E-06 3.7E-11 56.2 5.8 82 32-120 2-83 (84)
149 PRK15363 pathogenicity island 98.3 6E-05 1.3E-09 53.9 13.7 98 270-369 35-132 (157)
150 TIGR02795 tol_pal_ybgF tol-pal 98.3 5.6E-05 1.2E-09 53.0 13.7 99 61-159 3-105 (119)
151 PLN03088 SGT1, suppressor of 98.3 3.8E-05 8.3E-10 65.0 14.4 94 24-125 7-100 (356)
152 COG5107 RNA14 Pre-mRNA 3'-end 98.3 0.0016 3.6E-08 54.5 30.6 380 5-403 30-530 (660)
153 PF12895 Apc3: Anaphase-promot 98.3 5E-06 1.1E-10 54.0 7.1 81 283-365 2-83 (84)
154 PF05843 Suf: Suppressor of fo 98.3 1.9E-05 4.1E-10 64.4 11.6 142 236-382 2-147 (280)
155 cd00189 TPR Tetratricopeptide 98.3 1.6E-05 3.4E-10 53.2 9.7 90 276-367 6-95 (100)
156 TIGR00756 PPR pentatricopeptid 98.2 2.6E-06 5.6E-11 44.6 4.4 33 342-374 2-34 (35)
157 KOG0550 Molecular chaperone (D 98.2 0.0021 4.5E-08 53.2 22.3 267 22-300 52-351 (486)
158 PF13812 PPR_3: Pentatricopept 98.2 3E-06 6.6E-11 44.0 4.1 33 341-373 2-34 (34)
159 PLN03088 SGT1, suppressor of 98.2 4.8E-05 1E-09 64.4 13.3 89 243-333 10-98 (356)
160 PRK10866 outer membrane biogen 98.2 0.0012 2.5E-08 52.6 20.3 183 60-262 32-239 (243)
161 PRK02603 photosystem I assembl 98.2 0.00016 3.5E-09 54.4 14.9 90 20-115 36-126 (172)
162 CHL00033 ycf3 photosystem I as 98.2 5.9E-05 1.3E-09 56.6 12.4 63 61-123 36-100 (168)
163 PF05843 Suf: Suppressor of fo 98.2 8.3E-05 1.8E-09 60.7 13.8 131 20-159 2-136 (280)
164 PF14938 SNAP: Soluble NSF att 98.2 0.0018 3.9E-08 53.2 21.7 23 240-262 160-182 (282)
165 PF14938 SNAP: Soluble NSF att 98.2 0.00056 1.2E-08 56.2 18.5 58 135-193 119-183 (282)
166 KOG0553 TPR repeat-containing 98.2 3.4E-05 7.4E-10 60.6 10.5 96 245-344 91-186 (304)
167 PF10037 MRP-S27: Mitochondria 98.2 6.9E-05 1.5E-09 63.7 13.1 124 125-248 61-186 (429)
168 TIGR00756 PPR pentatricopeptid 98.1 5.1E-06 1.1E-10 43.5 4.2 33 97-129 2-34 (35)
169 PF13812 PPR_3: Pentatricopept 98.1 5.6E-06 1.2E-10 43.0 4.2 31 97-127 3-33 (34)
170 PRK10153 DNA-binding transcrip 98.1 0.00036 7.8E-09 61.9 17.8 137 14-159 332-482 (517)
171 COG4700 Uncharacterized protei 98.1 0.0013 2.9E-08 48.0 17.1 155 209-367 65-220 (251)
172 PF08579 RPM2: Mitochondrial r 98.1 7.4E-05 1.6E-09 49.5 9.8 81 62-142 27-116 (120)
173 COG4235 Cytochrome c biogenesi 98.1 0.00026 5.6E-09 56.1 14.5 116 36-160 139-257 (287)
174 PRK10866 outer membrane biogen 98.1 0.0024 5.2E-08 50.9 20.2 184 94-297 31-239 (243)
175 PF14559 TPR_19: Tetratricopep 98.1 1.6E-05 3.4E-10 49.3 6.4 62 30-100 2-63 (68)
176 PF13432 TPR_16: Tetratricopep 98.1 3.7E-05 7.9E-10 47.1 7.8 58 25-89 3-60 (65)
177 CHL00033 ycf3 photosystem I as 98.1 0.00019 4E-09 53.9 13.0 81 95-176 35-117 (168)
178 KOG0553 TPR repeat-containing 98.1 0.0004 8.6E-09 54.9 14.8 95 105-203 91-185 (304)
179 KOG1130 Predicted G-alpha GTPa 98.1 0.00013 2.9E-09 60.0 12.6 270 26-298 24-343 (639)
180 PRK02603 photosystem I assembl 98.1 0.00057 1.2E-08 51.5 15.6 93 59-152 34-128 (172)
181 PF13525 YfiO: Outer membrane 98.1 0.0025 5.4E-08 49.4 19.3 67 19-89 5-71 (203)
182 PF13414 TPR_11: TPR repeat; P 98.0 3.9E-05 8.5E-10 47.6 7.4 65 18-89 2-67 (69)
183 KOG2041 WD40 repeat protein [G 98.0 0.0089 1.9E-07 53.2 26.2 331 16-391 689-1073(1189)
184 PF12688 TPR_5: Tetratrico pep 98.0 0.00021 4.5E-09 49.3 11.0 109 273-385 4-116 (120)
185 PF12688 TPR_5: Tetratrico pep 98.0 0.00099 2.2E-08 46.0 14.2 96 23-123 5-103 (120)
186 KOG2796 Uncharacterized conser 98.0 0.00046 1E-08 53.3 13.2 148 74-229 163-315 (366)
187 COG4235 Cytochrome c biogenesi 98.0 0.00083 1.8E-08 53.4 15.1 102 92-195 153-257 (287)
188 PRK10153 DNA-binding transcrip 98.0 0.00083 1.8E-08 59.7 16.6 143 231-378 333-489 (517)
189 PF14559 TPR_19: Tetratricopep 97.9 0.00011 2.3E-09 45.5 7.3 52 282-334 3-54 (68)
190 COG3898 Uncharacterized membra 97.9 0.01 2.2E-07 49.0 28.3 289 97-402 84-390 (531)
191 KOG1130 Predicted G-alpha GTPa 97.9 0.0002 4.3E-09 59.0 10.4 84 104-188 26-118 (639)
192 COG4700 Uncharacterized protei 97.9 0.0051 1.1E-07 45.1 18.7 152 70-225 66-218 (251)
193 PF01535 PPR: PPR repeat; Int 97.9 2.8E-05 6.1E-10 39.2 3.7 29 342-370 2-30 (31)
194 PF13414 TPR_11: TPR repeat; P 97.9 8E-05 1.7E-09 46.2 6.4 63 340-403 3-66 (69)
195 PF08579 RPM2: Mitochondrial r 97.8 0.00042 9.1E-09 46.0 9.6 80 22-107 28-116 (120)
196 PF13432 TPR_16: Tetratricopep 97.8 8.6E-05 1.9E-09 45.4 6.2 58 311-369 3-60 (65)
197 KOG2280 Vacuolar assembly/sort 97.8 0.021 4.6E-07 51.3 27.1 342 12-398 425-793 (829)
198 PF01535 PPR: PPR repeat; Int 97.8 3.1E-05 6.8E-10 39.0 3.0 29 377-405 2-30 (31)
199 PF03704 BTAD: Bacterial trans 97.7 0.0034 7.3E-08 45.8 14.3 30 20-49 4-36 (146)
200 PRK10803 tol-pal system protei 97.7 0.0014 3E-08 52.7 13.0 99 22-124 146-246 (263)
201 COG3898 Uncharacterized membra 97.7 0.019 4E-07 47.6 30.6 279 32-333 97-391 (531)
202 PF13424 TPR_12: Tetratricopep 97.7 8.4E-05 1.8E-09 47.4 5.0 70 19-88 5-74 (78)
203 PF13281 DUF4071: Domain of un 97.7 0.024 5.2E-07 47.6 20.8 168 96-265 142-335 (374)
204 PRK10803 tol-pal system protei 97.7 0.00093 2E-08 53.6 11.4 98 271-369 144-246 (263)
205 PF13525 YfiO: Outer membrane 97.7 0.016 3.5E-07 44.9 19.4 56 138-193 13-70 (203)
206 PF06239 ECSIT: Evolutionarily 97.6 0.0022 4.8E-08 48.5 11.9 100 267-385 44-148 (228)
207 KOG2041 WD40 repeat protein [G 97.6 0.045 9.7E-07 49.0 24.3 64 304-367 1020-1084(1189)
208 PRK15331 chaperone protein Sic 97.6 0.0022 4.7E-08 46.4 11.2 118 250-369 8-134 (165)
209 PRK15331 chaperone protein Sic 97.6 0.0076 1.6E-07 43.7 13.6 118 215-334 8-134 (165)
210 PF13371 TPR_9: Tetratricopept 97.6 0.00075 1.6E-08 42.3 7.6 56 27-89 3-58 (73)
211 PF06239 ECSIT: Evolutionarily 97.5 0.0023 5.1E-08 48.4 10.4 71 179-249 66-152 (228)
212 PF07079 DUF1347: Protein of u 97.5 0.049 1.1E-06 46.2 34.5 114 286-402 396-522 (549)
213 PF13281 DUF4071: Domain of un 97.5 0.042 9.2E-07 46.2 18.7 166 202-369 143-334 (374)
214 KOG1258 mRNA processing protei 97.5 0.066 1.4E-06 47.1 30.1 369 3-389 64-489 (577)
215 KOG1538 Uncharacterized conser 97.4 0.032 6.9E-07 49.4 17.9 54 236-298 748-801 (1081)
216 PF03704 BTAD: Bacterial trans 97.4 0.0019 4.2E-08 47.1 9.6 74 60-134 62-140 (146)
217 PF13424 TPR_12: Tetratricopep 97.4 0.00041 8.8E-09 44.2 5.1 60 342-401 7-72 (78)
218 KOG1538 Uncharacterized conser 97.3 0.039 8.4E-07 48.9 17.0 90 269-369 746-846 (1081)
219 PF13371 TPR_9: Tetratricopept 97.3 0.0026 5.6E-08 39.8 7.8 50 142-192 7-56 (73)
220 PF10300 DUF3808: Protein of u 97.3 0.028 6E-07 49.8 16.3 167 23-192 192-374 (468)
221 PLN03098 LPA1 LOW PSII ACCUMUL 97.3 0.0075 1.6E-07 51.3 11.9 67 16-89 72-141 (453)
222 COG3118 Thioredoxin domain-con 97.2 0.07 1.5E-06 42.7 16.6 122 28-158 143-264 (304)
223 KOG2796 Uncharacterized conser 97.2 0.066 1.4E-06 42.0 22.8 131 238-369 180-315 (366)
224 PF04840 Vps16_C: Vps16, C-ter 97.2 0.11 2.4E-06 43.2 28.0 105 239-363 181-285 (319)
225 PF10300 DUF3808: Protein of u 97.1 0.1 2.2E-06 46.4 18.0 161 239-402 192-374 (468)
226 PF07079 DUF1347: Protein of u 97.1 0.14 3.1E-06 43.5 32.0 340 23-381 132-531 (549)
227 PF12921 ATP13: Mitochondrial 97.1 0.027 5.8E-07 39.5 11.5 89 18-106 1-99 (126)
228 COG3118 Thioredoxin domain-con 97.1 0.067 1.5E-06 42.8 14.6 154 242-398 141-295 (304)
229 COG1729 Uncharacterized protei 97.0 0.016 3.5E-07 45.7 11.1 97 272-369 144-244 (262)
230 PRK11906 transcriptional regul 97.0 0.093 2E-06 45.1 16.2 81 36-124 321-401 (458)
231 KOG0543 FKBP-type peptidyl-pro 97.0 0.027 5.9E-07 47.0 12.6 92 207-299 215-320 (397)
232 PRK11906 transcriptional regul 97.0 0.19 4.1E-06 43.3 18.2 161 20-190 252-432 (458)
233 KOG0543 FKBP-type peptidyl-pro 96.9 0.032 6.9E-07 46.6 12.2 91 103-194 216-320 (397)
234 PLN03098 LPA1 LOW PSII ACCUMUL 96.9 0.057 1.2E-06 46.3 13.9 66 57-124 72-141 (453)
235 PF13428 TPR_14: Tetratricopep 96.9 0.0039 8.5E-08 34.3 5.0 42 20-68 2-43 (44)
236 COG4105 ComL DNA uptake lipopr 96.9 0.15 3.2E-06 40.1 20.3 62 24-89 39-100 (254)
237 KOG1258 mRNA processing protei 96.9 0.29 6.4E-06 43.3 30.2 134 18-159 44-180 (577)
238 COG1729 Uncharacterized protei 96.9 0.05 1.1E-06 43.0 12.4 99 21-124 144-244 (262)
239 KOG4555 TPR repeat-containing 96.9 0.068 1.5E-06 36.9 11.4 92 27-125 51-145 (175)
240 PF12921 ATP13: Mitochondrial 96.8 0.051 1.1E-06 38.1 11.0 97 269-385 1-98 (126)
241 PF13512 TPR_18: Tetratricopep 96.7 0.11 2.3E-06 37.0 12.0 67 20-90 11-77 (142)
242 KOG2610 Uncharacterized conser 96.7 0.1 2.2E-06 42.6 13.1 151 177-330 115-272 (491)
243 PF04184 ST7: ST7 protein; In 96.7 0.32 6.9E-06 42.2 16.6 63 306-368 260-323 (539)
244 PF04053 Coatomer_WDAD: Coatom 96.7 0.14 3.1E-06 44.8 15.3 130 238-400 298-427 (443)
245 KOG1585 Protein required for f 96.7 0.21 4.5E-06 38.9 17.1 28 20-47 32-59 (308)
246 PF04053 Coatomer_WDAD: Coatom 96.6 0.18 3.9E-06 44.2 15.0 156 69-260 270-427 (443)
247 PF13512 TPR_18: Tetratricopep 96.5 0.16 3.5E-06 36.1 12.2 84 59-142 9-94 (142)
248 PF08631 SPO22: Meiosis protei 96.5 0.34 7.5E-06 39.8 26.1 62 167-229 86-150 (278)
249 KOG1941 Acetylcholine receptor 96.5 0.12 2.6E-06 42.6 12.6 231 28-262 15-273 (518)
250 PF13428 TPR_14: Tetratricopep 96.5 0.012 2.7E-07 32.3 5.2 40 61-101 2-41 (44)
251 PF04840 Vps16_C: Vps16, C-ter 96.5 0.41 8.8E-06 40.0 29.6 24 21-44 2-25 (319)
252 KOG2610 Uncharacterized conser 96.4 0.19 4.2E-06 41.0 13.1 152 71-225 114-272 (491)
253 COG4649 Uncharacterized protei 96.4 0.25 5.3E-06 36.2 12.8 136 18-160 58-197 (221)
254 KOG4555 TPR repeat-containing 96.4 0.13 2.8E-06 35.6 10.1 90 105-195 53-145 (175)
255 KOG1585 Protein required for f 96.2 0.41 8.9E-06 37.3 18.2 205 132-363 33-250 (308)
256 PF04184 ST7: ST7 protein; In 96.1 0.8 1.7E-05 39.9 15.8 152 24-195 173-325 (539)
257 KOG1941 Acetylcholine receptor 96.1 0.32 6.9E-06 40.3 12.9 228 70-297 16-273 (518)
258 COG4105 ComL DNA uptake lipopr 96.1 0.51 1.1E-05 37.2 20.6 63 62-124 36-100 (254)
259 COG0457 NrfG FOG: TPR repeat [ 96.1 0.55 1.2E-05 37.3 28.3 224 143-369 36-265 (291)
260 PF09205 DUF1955: Domain of un 96.0 0.32 6.9E-06 33.8 12.4 66 339-405 85-150 (161)
261 PF09205 DUF1955: Domain of un 95.8 0.38 8.3E-06 33.5 14.4 64 131-195 87-150 (161)
262 COG4785 NlpI Lipoprotein NlpI, 95.8 0.65 1.4E-05 35.6 15.2 185 28-230 74-267 (297)
263 PF07035 Mic1: Colon cancer-as 95.7 0.55 1.2E-05 34.7 14.2 100 220-331 14-115 (167)
264 COG3629 DnrI DNA-binding trans 95.7 0.17 3.7E-06 40.8 9.9 81 59-140 152-237 (280)
265 COG0457 NrfG FOG: TPR repeat [ 95.7 0.78 1.7E-05 36.4 28.0 201 131-334 60-265 (291)
266 KOG2114 Vacuolar assembly/sort 95.7 1.8 3.8E-05 40.4 23.7 152 22-190 337-488 (933)
267 COG5107 RNA14 Pre-mRNA 3'-end 95.7 1.2 2.6E-05 38.3 21.3 128 167-298 399-530 (660)
268 smart00299 CLH Clathrin heavy 95.7 0.53 1.2E-05 33.9 15.6 125 64-211 11-136 (140)
269 COG3629 DnrI DNA-binding trans 95.6 0.26 5.6E-06 39.8 10.5 80 94-174 152-236 (280)
270 smart00299 CLH Clathrin heavy 95.6 0.55 1.2E-05 33.8 15.2 41 241-282 13-53 (140)
271 COG4649 Uncharacterized protei 95.5 0.66 1.4E-05 34.1 14.0 137 58-195 57-197 (221)
272 PF13431 TPR_17: Tetratricopep 95.5 0.017 3.7E-07 29.5 2.5 32 42-80 2-33 (34)
273 PF13170 DUF4003: Protein of u 95.5 1.2 2.6E-05 36.9 20.0 48 77-124 79-132 (297)
274 KOG1920 IkappaB kinase complex 95.5 2.7 5.8E-05 41.0 21.7 104 245-366 949-1052(1265)
275 PF13176 TPR_7: Tetratricopept 95.5 0.037 8E-07 28.7 3.8 27 21-47 1-27 (36)
276 PF10602 RPN7: 26S proteasome 95.4 0.45 9.6E-06 35.9 10.7 61 22-86 39-99 (177)
277 PF13176 TPR_7: Tetratricopept 95.3 0.047 1E-06 28.3 3.9 26 342-367 1-26 (36)
278 KOG3941 Intermediate in Toll s 95.2 0.27 5.7E-06 39.2 9.0 103 129-250 66-173 (406)
279 PRK15180 Vi polysaccharide bio 95.1 2 4.3E-05 37.3 25.4 129 23-160 293-421 (831)
280 KOG2114 Vacuolar assembly/sort 95.1 1 2.3E-05 41.8 13.7 245 133-402 337-588 (933)
281 KOG1550 Extracellular protein 95.1 2.7 5.8E-05 38.6 27.3 244 76-334 228-504 (552)
282 PF10602 RPN7: 26S proteasome 95.1 0.66 1.4E-05 35.0 10.8 63 61-123 37-101 (177)
283 PF08631 SPO22: Meiosis protei 95.1 1.6 3.5E-05 35.9 26.2 164 70-235 3-192 (278)
284 KOG2280 Vacuolar assembly/sort 95.0 2.9 6.4E-05 38.5 29.1 320 70-401 399-770 (829)
285 KOG1920 IkappaB kinase complex 95.0 4 8.6E-05 39.9 27.1 85 272-368 941-1027(1265)
286 PF13431 TPR_17: Tetratricopep 94.9 0.042 9.2E-07 28.1 2.9 23 302-324 10-32 (34)
287 PF09613 HrpB1_HrpK: Bacterial 94.8 1.1 2.3E-05 32.7 13.4 55 28-89 19-73 (160)
288 PF07035 Mic1: Colon cancer-as 94.7 1.2 2.7E-05 32.9 15.1 29 9-37 19-47 (167)
289 KOG2471 TPR repeat-containing 94.6 0.87 1.9E-05 39.5 11.3 109 279-388 249-382 (696)
290 COG2976 Uncharacterized protei 94.5 0.98 2.1E-05 34.0 10.1 130 18-160 53-189 (207)
291 KOG4234 TPR repeat-containing 94.5 0.66 1.4E-05 35.0 9.2 89 69-159 104-197 (271)
292 PF00515 TPR_1: Tetratricopept 94.5 0.11 2.3E-06 26.4 4.0 28 341-368 2-29 (34)
293 COG4785 NlpI Lipoprotein NlpI, 94.4 1.8 3.9E-05 33.3 16.5 28 271-298 238-265 (297)
294 PF09613 HrpB1_HrpK: Bacterial 94.3 1.5 3.3E-05 32.0 12.7 18 280-297 54-71 (160)
295 KOG3941 Intermediate in Toll s 94.3 0.7 1.5E-05 37.0 9.3 106 92-216 64-174 (406)
296 PF11207 DUF2989: Protein of u 94.2 0.48 1E-05 35.9 8.1 23 92-114 175-197 (203)
297 KOG1550 Extracellular protein 94.1 4.6 0.0001 37.1 26.9 275 35-334 228-538 (552)
298 PF02259 FAT: FAT domain; Int 94.1 3.4 7.3E-05 35.4 21.4 65 234-298 145-212 (352)
299 KOG0890 Protein kinase of the 94.1 9.4 0.0002 40.6 24.8 152 65-224 1388-1542(2382)
300 PF07719 TPR_2: Tetratricopept 94.0 0.16 3.6E-06 25.6 4.0 27 342-368 3-29 (34)
301 PF00515 TPR_1: Tetratricopept 94.0 0.16 3.4E-06 25.8 3.9 30 20-49 2-31 (34)
302 PF11207 DUF2989: Protein of u 93.7 1.6 3.4E-05 33.3 9.9 79 315-395 117-198 (203)
303 COG2909 MalT ATP-dependent tra 93.6 6.8 0.00015 37.2 30.2 226 102-330 422-684 (894)
304 PF07719 TPR_2: Tetratricopept 93.6 0.2 4.4E-06 25.2 3.9 30 20-49 2-31 (34)
305 COG2909 MalT ATP-dependent tra 93.3 7.6 0.00016 36.9 27.7 227 174-400 424-684 (894)
306 PRK11619 lytic murein transgly 93.2 7.5 0.00016 36.5 30.9 135 29-180 43-178 (644)
307 PF13170 DUF4003: Protein of u 93.1 4.4 9.6E-05 33.6 19.0 132 111-244 78-226 (297)
308 cd00923 Cyt_c_Oxidase_Va Cytoc 93.1 0.99 2.2E-05 29.5 6.9 59 3-68 26-84 (103)
309 KOG4234 TPR repeat-containing 92.8 3.3 7.2E-05 31.5 10.4 90 104-194 104-197 (271)
310 PF02284 COX5A: Cytochrome c o 92.8 1.4 3.1E-05 29.1 7.4 77 306-383 9-87 (108)
311 TIGR02561 HrpB1_HrpK type III 92.6 2.8 6.1E-05 30.1 11.8 52 31-89 22-73 (153)
312 cd00923 Cyt_c_Oxidase_Va Cytoc 92.5 0.56 1.2E-05 30.6 5.2 63 320-383 22-84 (103)
313 PF13374 TPR_10: Tetratricopep 92.4 0.4 8.7E-06 25.6 4.2 28 341-368 3-30 (42)
314 PF13374 TPR_10: Tetratricopep 92.1 0.37 8.1E-06 25.7 3.9 30 19-48 2-31 (42)
315 PF00637 Clathrin: Region in C 92.1 0.021 4.5E-07 41.5 -1.6 84 241-331 13-96 (143)
316 COG2976 Uncharacterized protei 92.0 4.2 9.2E-05 30.8 15.3 92 277-370 96-189 (207)
317 TIGR02561 HrpB1_HrpK type III 91.8 3.6 7.9E-05 29.6 11.9 19 280-298 54-72 (153)
318 PF10345 Cohesin_load: Cohesin 91.7 11 0.00025 35.2 33.8 188 3-192 40-252 (608)
319 PF06552 TOM20_plant: Plant sp 91.7 2.6 5.7E-05 31.4 8.6 109 35-159 7-136 (186)
320 PF02284 COX5A: Cytochrome c o 91.7 2.7 5.9E-05 27.9 8.9 74 273-347 11-86 (108)
321 KOG4570 Uncharacterized conser 91.6 2.3 5E-05 34.7 8.9 51 319-369 114-164 (418)
322 KOG0276 Vesicle coat complex C 91.6 6.9 0.00015 35.3 12.3 26 271-296 667-692 (794)
323 KOG4570 Uncharacterized conser 91.4 2 4.4E-05 35.1 8.3 103 160-264 59-164 (418)
324 KOG4648 Uncharacterized conser 91.4 1.7 3.7E-05 35.9 8.0 91 26-124 104-194 (536)
325 PRK09687 putative lyase; Provi 91.3 7.4 0.00016 32.1 27.6 137 234-386 141-278 (280)
326 TIGR03504 FimV_Cterm FimV C-te 91.2 0.36 7.7E-06 26.4 3.0 22 346-367 5-26 (44)
327 PF13174 TPR_6: Tetratricopept 91.2 0.45 9.8E-06 23.7 3.3 29 21-49 2-30 (33)
328 PF08424 NRDE-2: NRDE-2, neces 91.2 8.4 0.00018 32.6 16.9 99 16-122 16-129 (321)
329 KOG2396 HAT (Half-A-TPR) repea 91.0 11 0.00023 33.4 36.1 94 307-402 462-557 (568)
330 PF13181 TPR_8: Tetratricopept 91.0 0.67 1.5E-05 23.3 3.9 30 20-49 2-31 (34)
331 KOG0890 Protein kinase of the 90.5 28 0.00061 37.5 26.0 322 24-369 1388-1731(2382)
332 TIGR03504 FimV_Cterm FimV C-te 90.5 0.71 1.5E-05 25.2 3.7 26 310-335 4-29 (44)
333 PF13181 TPR_8: Tetratricopept 90.4 0.97 2.1E-05 22.7 4.2 27 342-368 3-29 (34)
334 PF02259 FAT: FAT domain; Int 90.3 11 0.00024 32.3 23.3 54 25-88 4-57 (352)
335 COG4455 ImpE Protein of avirul 90.1 3.8 8.3E-05 31.7 8.3 59 64-123 5-63 (273)
336 PF04097 Nic96: Nup93/Nic96; 89.9 17 0.00037 34.1 21.7 61 21-89 114-181 (613)
337 COG4455 ImpE Protein of avirul 89.8 4.4 9.6E-05 31.3 8.5 76 98-174 4-81 (273)
338 PF13174 TPR_6: Tetratricopept 89.6 0.68 1.5E-05 23.0 3.2 27 63-89 3-29 (33)
339 PF07721 TPR_4: Tetratricopept 89.6 0.79 1.7E-05 21.5 3.1 18 311-328 7-24 (26)
340 KOG4642 Chaperone-dependent E3 89.5 8.9 0.00019 30.3 10.0 121 244-367 19-144 (284)
341 KOG4648 Uncharacterized conser 89.5 2.9 6.4E-05 34.6 7.9 90 103-194 105-194 (536)
342 PF07163 Pex26: Pex26 protein; 89.3 10 0.00022 30.7 13.0 126 63-188 38-181 (309)
343 KOG1464 COP9 signalosome, subu 89.2 10 0.00022 30.5 18.8 202 90-291 21-252 (440)
344 PF06552 TOM20_plant: Plant sp 89.2 7.4 0.00016 29.2 9.1 13 232-244 110-122 (186)
345 KOG0276 Vesicle coat complex C 88.6 19 0.00041 32.8 12.7 151 30-226 597-747 (794)
346 PRK11619 lytic murein transgly 88.2 23 0.0005 33.4 30.0 310 70-402 43-373 (644)
347 PRK09687 putative lyase; Provi 88.1 14 0.00029 30.6 27.8 60 58-121 35-98 (280)
348 PF10579 Rapsyn_N: Rapsyn N-te 87.9 2.2 4.7E-05 26.7 4.9 56 24-84 12-67 (80)
349 PRK15180 Vi polysaccharide bio 87.8 19 0.00041 31.8 14.5 125 67-195 296-421 (831)
350 PF07163 Pex26: Pex26 protein; 87.8 13 0.00029 30.1 13.2 132 22-153 38-181 (309)
351 KOG4642 Chaperone-dependent E3 87.7 12 0.00027 29.5 10.8 85 29-121 20-104 (284)
352 PF00637 Clathrin: Region in C 87.3 0.24 5.1E-06 35.9 0.6 84 66-156 13-96 (143)
353 COG0790 FOG: TPR repeat, SEL1 86.9 16 0.00036 30.3 22.8 51 74-127 91-145 (292)
354 PF13929 mRNA_stabil: mRNA sta 86.7 16 0.00035 29.9 15.5 115 75-189 143-262 (292)
355 KOG1308 Hsp70-interacting prot 86.3 0.61 1.3E-05 38.4 2.4 88 73-162 127-214 (377)
356 COG5159 RPN6 26S proteasome re 86.1 17 0.00037 29.6 11.7 23 204-226 129-151 (421)
357 COG3947 Response regulator con 86.1 17 0.00038 29.7 15.9 57 134-191 283-339 (361)
358 TIGR02508 type_III_yscG type I 85.9 8 0.00017 25.6 8.3 86 34-133 20-105 (115)
359 PF10345 Cohesin_load: Cohesin 85.5 33 0.00071 32.3 32.5 195 18-227 29-252 (608)
360 KOG1464 COP9 signalosome, subu 85.2 18 0.0004 29.1 17.9 190 72-261 39-257 (440)
361 PF08424 NRDE-2: NRDE-2, neces 85.1 22 0.00049 30.1 17.4 99 57-157 16-129 (321)
362 COG3947 Response regulator con 84.7 20 0.00044 29.3 15.7 59 343-402 282-340 (361)
363 KOG4077 Cytochrome c oxidase, 84.6 8.4 0.00018 26.8 6.7 44 289-332 68-111 (149)
364 KOG2066 Vacuolar assembly/sort 84.0 39 0.00084 32.0 24.9 105 26-142 363-467 (846)
365 PF10579 Rapsyn_N: Rapsyn N-te 83.9 4 8.6E-05 25.6 4.6 46 352-397 18-65 (80)
366 COG1747 Uncharacterized N-term 83.6 32 0.0007 30.7 24.9 178 93-278 64-247 (711)
367 COG1747 Uncharacterized N-term 83.3 33 0.00073 30.7 25.6 180 57-244 63-248 (711)
368 KOG4507 Uncharacterized conser 82.7 9 0.0002 34.6 7.9 87 142-229 619-705 (886)
369 smart00028 TPR Tetratricopepti 82.1 3 6.5E-05 19.8 3.4 30 20-49 2-31 (34)
370 PF04190 DUF410: Protein of un 81.9 26 0.00057 28.5 15.5 28 303-330 88-115 (260)
371 KOG2422 Uncharacterized conser 81.3 43 0.00092 30.5 16.9 164 30-193 249-447 (665)
372 PF11846 DUF3366: Domain of un 81.3 9.6 0.00021 29.3 7.2 51 317-369 120-173 (193)
373 KOG4077 Cytochrome c oxidase, 80.8 17 0.00036 25.4 7.0 57 4-67 69-125 (149)
374 KOG2396 HAT (Half-A-TPR) repea 80.3 43 0.00093 29.9 30.9 96 272-369 462-559 (568)
375 KOG2471 TPR repeat-containing 80.2 43 0.00093 29.9 14.7 110 207-317 247-381 (696)
376 PF04097 Nic96: Nup93/Nic96; 79.9 55 0.0012 30.9 18.5 89 207-300 265-357 (613)
377 PF11817 Foie-gras_1: Foie gra 79.6 9.3 0.0002 30.8 6.8 78 37-122 163-245 (247)
378 KOG4507 Uncharacterized conser 78.3 17 0.00037 32.9 8.2 86 178-264 620-705 (886)
379 PF12862 Apc5: Anaphase-promot 78.3 14 0.0003 24.3 6.3 55 315-369 8-70 (94)
380 KOG3364 Membrane protein invol 77.5 23 0.0005 25.2 9.5 23 346-368 77-99 (149)
381 KOG0376 Serine-threonine phosp 77.4 6.7 0.00014 34.3 5.5 107 25-141 10-116 (476)
382 PRK10941 hypothetical protein; 77.2 39 0.00084 27.7 9.5 56 276-332 187-242 (269)
383 PF14853 Fis1_TPR_C: Fis1 C-te 76.8 12 0.00026 21.5 5.3 35 345-381 6-40 (53)
384 KOG1308 Hsp70-interacting prot 76.5 2.1 4.6E-05 35.4 2.3 97 105-203 124-220 (377)
385 PF14689 SPOB_a: Sensor_kinase 76.4 6.1 0.00013 23.6 3.7 25 344-368 27-51 (62)
386 PF08311 Mad3_BUB1_I: Mad3/BUB 76.3 24 0.00052 24.9 7.7 42 78-120 81-124 (126)
387 PF11817 Foie-gras_1: Foie gra 76.3 25 0.00053 28.5 8.3 55 309-363 182-241 (247)
388 PF14689 SPOB_a: Sensor_kinase 75.3 15 0.00032 21.9 5.4 28 60-87 23-50 (62)
389 PRK10564 maltose regulon perip 74.2 9.6 0.00021 31.3 5.3 35 15-49 252-287 (303)
390 COG5108 RPO41 Mitochondrial DN 74.1 39 0.00086 31.4 9.3 76 24-106 33-114 (1117)
391 KOG0376 Serine-threonine phosp 73.9 16 0.00034 32.2 6.7 106 66-175 10-115 (476)
392 KOG2300 Uncharacterized conser 73.9 66 0.0014 28.7 31.0 367 30-398 58-508 (629)
393 PRK10941 hypothetical protein; 73.8 49 0.0011 27.2 10.2 61 63-124 184-244 (269)
394 smart00386 HAT HAT (Half-A-TPR 73.1 9.1 0.0002 18.5 3.7 30 33-69 1-30 (33)
395 COG0735 Fur Fe2+/Zn2+ uptake r 73.0 29 0.00062 25.2 7.2 61 83-144 9-69 (145)
396 PF09986 DUF2225: Uncharacteri 73.0 44 0.00095 26.3 9.9 49 112-160 142-195 (214)
397 KOG0686 COP9 signalosome, subu 72.9 63 0.0014 28.1 14.7 62 97-158 152-215 (466)
398 COG0735 Fur Fe2+/Zn2+ uptake r 72.9 26 0.00055 25.5 6.9 64 5-75 7-70 (145)
399 cd00280 TRFH Telomeric Repeat 72.7 24 0.00052 26.6 6.6 48 1-48 86-140 (200)
400 KOG0686 COP9 signalosome, subu 72.3 65 0.0014 28.0 14.4 175 131-313 151-352 (466)
401 cd08819 CARD_MDA5_2 Caspase ac 71.9 24 0.00052 22.8 6.5 66 3-80 21-86 (88)
402 KOG0403 Neoplastic transformat 71.8 71 0.0015 28.2 16.1 91 308-403 512-610 (645)
403 PF12862 Apc5: Anaphase-promot 71.5 26 0.00056 23.0 6.6 59 29-89 8-70 (94)
404 PF07575 Nucleopor_Nup85: Nup8 70.7 93 0.002 29.1 18.5 26 19-45 149-174 (566)
405 COG0790 FOG: TPR repeat, SEL1 70.6 61 0.0013 26.9 23.9 83 142-230 53-143 (292)
406 PF11848 DUF3368: Domain of un 70.4 17 0.00036 20.3 4.9 34 350-383 12-45 (48)
407 PF11846 DUF3366: Domain of un 70.2 24 0.00051 27.2 6.7 43 80-124 131-173 (193)
408 cd00280 TRFH Telomeric Repeat 70.0 46 0.00099 25.3 7.9 21 68-88 119-139 (200)
409 PF09670 Cas_Cas02710: CRISPR- 69.6 70 0.0015 27.9 9.9 57 172-229 138-198 (379)
410 PF14561 TPR_20: Tetratricopep 69.0 29 0.00064 22.7 8.9 63 8-76 12-74 (90)
411 PF09670 Cas_Cas02710: CRISPR- 68.6 81 0.0018 27.6 11.9 57 207-264 138-198 (379)
412 PF09986 DUF2225: Uncharacteri 68.3 57 0.0012 25.7 11.1 64 307-370 120-195 (214)
413 TIGR02508 type_III_yscG type I 68.3 33 0.00071 22.9 8.5 10 142-151 51-60 (115)
414 PRK10564 maltose regulon perip 67.5 16 0.00034 30.1 5.2 42 340-381 257-298 (303)
415 KOG1839 Uncharacterized protei 67.2 1.1E+02 0.0024 31.1 11.4 125 69-193 941-1085(1236)
416 KOG0687 26S proteasome regulat 67.1 76 0.0016 26.7 12.7 134 56-193 66-209 (393)
417 PF07575 Nucleopor_Nup85: Nup8 66.4 61 0.0013 30.2 9.5 24 248-271 508-531 (566)
418 KOG0128 RNA-binding protein SA 66.3 1.3E+02 0.0028 29.1 34.2 364 18-395 112-554 (881)
419 PF04910 Tcf25: Transcriptiona 66.2 88 0.0019 27.1 21.1 47 30-87 21-67 (360)
420 KOG1586 Protein required for f 65.9 67 0.0015 25.6 19.7 63 136-198 119-187 (288)
421 PF02184 HAT: HAT (Half-A-TPR) 65.6 16 0.00035 18.3 3.4 26 355-382 2-27 (32)
422 PF14561 TPR_20: Tetratricopep 65.4 36 0.00077 22.3 8.7 54 57-110 19-73 (90)
423 KOG2063 Vacuolar assembly/sort 64.4 1.5E+02 0.0033 29.2 19.4 27 62-88 506-532 (877)
424 PF11663 Toxin_YhaV: Toxin wit 64.2 8.3 0.00018 27.2 2.7 32 351-384 106-137 (140)
425 KOG1839 Uncharacterized protei 63.5 1.2E+02 0.0027 30.9 10.9 120 4-123 958-1085(1236)
426 PF09454 Vps23_core: Vps23 cor 63.2 21 0.00046 21.6 4.0 51 16-73 5-55 (65)
427 PRK12798 chemotaxis protein; R 62.6 1.1E+02 0.0024 26.9 21.9 82 143-226 125-211 (421)
428 PRK12798 chemotaxis protein; R 62.3 1.1E+02 0.0024 26.9 20.7 199 176-376 123-331 (421)
429 PF03745 DUF309: Domain of unk 61.9 32 0.00069 20.6 6.6 50 28-83 8-62 (62)
430 PF05944 Phage_term_smal: Phag 60.8 58 0.0013 23.2 7.1 32 61-92 49-80 (132)
431 PF09454 Vps23_core: Vps23 cor 60.6 29 0.00064 21.0 4.3 50 57-107 5-54 (65)
432 PF13929 mRNA_stabil: mRNA sta 60.5 97 0.0021 25.6 18.1 61 268-328 200-261 (292)
433 KOG2908 26S proteasome regulat 60.0 89 0.0019 26.5 8.1 59 275-333 80-143 (380)
434 KOG2297 Predicted translation 59.6 1E+02 0.0022 25.7 15.8 232 126-395 107-341 (412)
435 KOG3364 Membrane protein invol 59.2 64 0.0014 23.1 9.6 68 92-159 29-100 (149)
436 KOG2659 LisH motif-containing 58.8 90 0.0019 24.7 9.5 102 267-368 23-131 (228)
437 PF13762 MNE1: Mitochondrial s 58.2 70 0.0015 23.3 9.0 84 22-106 42-126 (145)
438 KOG0292 Vesicle coat complex C 57.5 23 0.0005 33.9 5.0 100 280-400 653-752 (1202)
439 PF11848 DUF3368: Domain of un 57.2 33 0.00071 19.2 5.0 31 72-102 14-44 (48)
440 PF11663 Toxin_YhaV: Toxin wit 55.8 19 0.00041 25.5 3.3 21 109-129 109-129 (140)
441 KOG2063 Vacuolar assembly/sort 55.5 2.2E+02 0.0048 28.2 18.5 119 21-142 506-638 (877)
442 COG5108 RPO41 Mitochondrial DN 55.2 1.4E+02 0.003 28.1 9.1 91 135-228 33-131 (1117)
443 KOG0551 Hsp90 co-chaperone CNS 54.9 1.3E+02 0.0029 25.5 8.4 92 63-155 84-178 (390)
444 KOG0545 Aryl-hydrocarbon recep 54.9 1.1E+02 0.0024 24.6 9.3 60 99-159 234-293 (329)
445 COG4976 Predicted methyltransf 54.4 40 0.00087 26.7 5.1 56 28-90 4-59 (287)
446 PF08311 Mad3_BUB1_I: Mad3/BUB 53.5 77 0.0017 22.4 11.4 43 113-155 81-124 (126)
447 PHA02875 ankyrin repeat protei 53.5 1.6E+02 0.0035 26.0 9.9 34 5-38 16-51 (413)
448 KOG2066 Vacuolar assembly/sort 53.1 2.2E+02 0.0047 27.5 25.5 75 20-107 393-467 (846)
449 PF10366 Vps39_1: Vacuolar sor 52.9 54 0.0012 22.4 5.1 26 203-228 42-67 (108)
450 PF10366 Vps39_1: Vacuolar sor 52.6 72 0.0016 21.8 7.7 27 342-368 41-67 (108)
451 COG5191 Uncharacterized conser 51.1 59 0.0013 27.1 5.8 68 16-90 104-172 (435)
452 PF04910 Tcf25: Transcriptiona 50.8 1.7E+02 0.0036 25.5 21.8 142 69-228 19-167 (360)
453 COG5187 RPN7 26S proteasome re 50.2 1.5E+02 0.0032 24.6 13.3 98 94-193 114-220 (412)
454 PF05944 Phage_term_smal: Phag 49.9 93 0.002 22.2 8.7 30 98-127 51-80 (132)
455 PF14853 Fis1_TPR_C: Fis1 C-te 49.8 49 0.0011 19.0 5.8 22 138-159 9-30 (53)
456 PRK11639 zinc uptake transcrip 49.1 93 0.002 23.4 6.4 63 8-77 15-77 (169)
457 KOG4521 Nuclear pore complex, 48.1 3.2E+02 0.007 28.0 11.8 127 22-153 986-1125(1480)
458 KOG0551 Hsp90 co-chaperone CNS 47.9 1.8E+02 0.0038 24.8 8.9 98 21-122 83-180 (390)
459 KOG4521 Nuclear pore complex, 47.8 3.3E+02 0.0071 27.9 13.2 24 345-368 1375-1398(1480)
460 KOG1586 Protein required for f 47.3 1.5E+02 0.0032 23.8 20.3 25 241-265 160-184 (288)
461 COG4259 Uncharacterized protei 47.0 85 0.0018 21.0 6.6 23 169-191 76-98 (121)
462 PF07720 TPR_3: Tetratricopept 46.2 43 0.00093 17.3 3.6 18 345-362 6-23 (36)
463 PRK09462 fur ferric uptake reg 45.8 1.2E+02 0.0025 22.2 7.2 35 110-144 32-66 (148)
464 KOG3807 Predicted membrane pro 45.7 1.9E+02 0.0041 24.6 13.8 59 135-195 280-341 (556)
465 KOG2422 Uncharacterized conser 45.6 2.5E+02 0.0055 26.0 15.8 52 315-366 352-404 (665)
466 PF10475 DUF2450: Protein of u 45.4 1.8E+02 0.0039 24.3 10.3 152 62-224 62-221 (291)
467 COG4259 Uncharacterized protei 45.0 93 0.002 20.8 6.6 54 184-239 56-109 (121)
468 PF13762 MNE1: Mitochondrial s 44.7 1.2E+02 0.0026 22.1 9.8 48 130-177 79-127 (145)
469 PF10516 SHNi-TPR: SHNi-TPR; 44.4 49 0.0011 17.4 3.5 26 62-87 3-28 (38)
470 PF04090 RNA_pol_I_TF: RNA pol 44.3 1.5E+02 0.0033 23.0 7.3 63 305-368 41-104 (199)
471 KOG3677 RNA polymerase I-assoc 43.9 2.1E+02 0.0046 25.2 8.1 17 139-155 281-297 (525)
472 PF12968 DUF3856: Domain of Un 43.9 1.1E+02 0.0024 21.4 5.6 63 19-85 55-125 (144)
473 cd08819 CARD_MDA5_2 Caspase ac 43.8 90 0.0019 20.3 6.6 13 319-331 50-62 (88)
474 PRK09462 fur ferric uptake reg 43.8 1.3E+02 0.0027 22.0 7.0 62 8-76 6-68 (148)
475 PRK13342 recombination factor 43.8 2.4E+02 0.0051 25.1 19.1 21 144-164 244-264 (413)
476 smart00777 Mad3_BUB1_I Mad3/BU 43.3 1.2E+02 0.0025 21.5 8.1 44 74-119 80-123 (125)
477 COG2256 MGS1 ATPase related to 43.0 2.4E+02 0.0051 24.9 14.6 142 75-232 164-321 (436)
478 PRK11639 zinc uptake transcrip 42.5 1.5E+02 0.0032 22.4 7.5 44 101-144 31-74 (169)
479 KOG0545 Aryl-hydrocarbon recep 42.0 1.9E+02 0.0041 23.5 10.1 99 270-369 178-293 (329)
480 PHA02875 ankyrin repeat protei 41.7 2.5E+02 0.0054 24.8 11.2 211 140-376 9-231 (413)
481 cd07153 Fur_like Ferric uptake 41.5 80 0.0017 21.6 4.8 11 114-124 19-29 (116)
482 KOG3677 RNA polymerase I-assoc 41.1 2.5E+02 0.0055 24.8 10.0 61 62-123 237-300 (525)
483 PF04190 DUF410: Protein of un 40.9 2E+02 0.0044 23.5 14.7 25 94-118 89-113 (260)
484 COG5159 RPN6 26S proteasome re 40.8 2.1E+02 0.0046 23.7 21.4 199 24-228 8-234 (421)
485 cd07153 Fur_like Ferric uptake 40.7 1.1E+02 0.0024 21.0 5.4 47 65-111 5-51 (116)
486 PF13934 ELYS: Nuclear pore co 40.2 1.9E+02 0.0041 23.1 16.0 114 245-372 88-201 (226)
487 PF01475 FUR: Ferric uptake re 39.6 69 0.0015 22.2 4.3 23 68-90 15-37 (120)
488 PHA02537 M terminase endonucle 38.9 2E+02 0.0044 23.0 10.7 28 63-90 86-113 (230)
489 KOG4814 Uncharacterized conser 38.8 3.5E+02 0.0075 25.6 16.2 93 29-123 364-456 (872)
490 PRK12356 glutaminase; Reviewed 38.7 2.5E+02 0.0053 23.9 10.0 15 14-28 93-107 (319)
491 PF01475 FUR: Ferric uptake re 38.7 1E+02 0.0022 21.4 5.0 48 99-146 11-58 (120)
492 smart00777 Mad3_BUB1_I Mad3/BU 38.3 1.4E+02 0.0031 21.1 9.1 73 78-155 51-124 (125)
493 COG4976 Predicted methyltransf 38.2 1.6E+02 0.0035 23.5 6.1 52 142-194 7-58 (287)
494 PF09477 Type_III_YscG: Bacter 37.9 1.3E+02 0.0029 20.6 11.2 16 177-192 81-96 (116)
495 PRK13800 putative oxidoreducta 37.8 4.4E+02 0.0096 26.6 29.6 248 57-333 632-880 (897)
496 COG5191 Uncharacterized conser 37.2 1.6E+02 0.0034 24.8 6.2 65 59-124 106-171 (435)
497 PRK13342 recombination factor 37.0 3E+02 0.0066 24.5 19.9 22 214-235 244-265 (413)
498 PF00244 14-3-3: 14-3-3 protei 37.0 2.2E+02 0.0048 22.9 12.3 166 22-193 4-197 (236)
499 PF11123 DNA_Packaging_2: DNA 36.9 1.1E+02 0.0023 19.1 4.6 33 180-213 12-44 (82)
500 COG5187 RPN7 26S proteasome re 36.9 2.5E+02 0.0054 23.4 14.1 66 200-265 115-185 (412)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.6e-63 Score=454.54 Aligned_cols=395 Identities=20% Similarity=0.345 Sum_probs=374.1
Q ss_pred ChHhHHHHHHhhcCC-CCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHH
Q 035749 1 MEAAALFTKLKAFGC-EPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKA 79 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 79 (405)
++|+++|++|.+.|+ +++...+..++..|.+.|..++|..+|+.|. .|+..+|+.++.+|++.|+++.|
T Consensus 387 ~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~----------~pd~~Tyn~LL~a~~k~g~~e~A 456 (1060)
T PLN03218 387 KDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR----------NPTLSTFNMLMSVCASSQDIDGA 456 (1060)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC----------CCCHHHHHHHHHHHHhCcCHHHH
Confidence 378999999999985 5677778889999999999999999998884 47899999999999999999999
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 80 KELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+.
T Consensus 457 ~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~ 536 (1060)
T PLN03218 457 LRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK 536 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh--cCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhh
Q 035749 160 GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMES--MGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVT 237 (405)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 237 (405)
|+.||..+|+.++.+|++.|++++|.++|++|.. .++.||..+|+.++.+|++.|++++|.++|+.|.+.++.|+..+
T Consensus 537 Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~t 616 (1060)
T PLN03218 537 NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV 616 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHH
Confidence 9999999999999999999999999999999976 57789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 035749 238 YNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCK 317 (405)
Q Consensus 238 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (405)
|+.++.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.++.+|++
T Consensus 617 ynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k 696 (1060)
T PLN03218 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN 696 (1060)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHH
Q 035749 318 SGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVEL 397 (405)
Q Consensus 318 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 397 (405)
.|++++|.++|++|.+.+..||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|..++.+|.+.|++++|.++
T Consensus 697 ~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l 776 (1060)
T PLN03218 697 AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDL 776 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999988899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcC
Q 035749 398 LHRMDERN 405 (405)
Q Consensus 398 ~~~~~~~~ 405 (405)
+++|.+.|
T Consensus 777 ~~~M~k~G 784 (1060)
T PLN03218 777 LSQAKEDG 784 (1060)
T ss_pred HHHHHHcC
Confidence 99998765
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.1e-62 Score=450.79 Aligned_cols=394 Identities=23% Similarity=0.374 Sum_probs=378.4
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHH
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKE 81 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 81 (405)
+|+.+|+.|.. |+..+|+.++.+|++.|+++.|.++|+.|.+.+ +.|+..+|+.+|.+|++.|++++|.+
T Consensus 424 eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G------l~pD~~tynsLI~~y~k~G~vd~A~~ 493 (1060)
T PLN03218 424 EAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAG------LKADCKLYTTLISTCAKSGKVDAMFE 493 (1060)
T ss_pred HHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhCcCHHHHHH
Confidence 67888888864 899999999999999999999999999999998 89999999999999999999999999
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHH--c
Q 035749 82 LLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQ--I 159 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~ 159 (405)
+|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .
T Consensus 494 vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~ 573 (1060)
T PLN03218 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETH 573 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986 5
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHH
Q 035749 160 GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYN 239 (405)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (405)
|+.||..+|+.++.+|++.|++++|.++|+.|.+.+++|+..+|+.++.+|++.|++++|.++|++|...|+.||..+|+
T Consensus 574 gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Tyn 653 (1060)
T PLN03218 574 PIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFS 653 (1060)
T ss_pred CCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC
Q 035749 240 TLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSG 319 (405)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 319 (405)
.++.+|.+.|++++|.++++.|.+.|+.|+..+|+.++.+|++.|++++|.++|+.|...++.||..+|+.++.+|++.|
T Consensus 654 sLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G 733 (1060)
T PLN03218 654 ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGN 733 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----c-------
Q 035749 320 RLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIR----N------- 388 (405)
Q Consensus 320 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~------- 388 (405)
++++|.++|++|.+.|+.||..+|+.++.+|.+.|++++|.+++++|.+.|+.||..+|+.++..|.+ .
T Consensus 734 ~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v 813 (1060)
T PLN03218 734 QLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPV 813 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999865432 1
Q ss_pred ------------CchhHHHHHHHHhhhcC
Q 035749 389 ------------NETSKVVELLHRMDERN 405 (405)
Q Consensus 389 ------------g~~~~a~~~~~~~~~~~ 405 (405)
+..++|..+|++|.+.|
T Consensus 814 ~~f~~g~~~~~n~w~~~Al~lf~eM~~~G 842 (1060)
T PLN03218 814 VSFDSGRPQIENKWTSWALMVYRETISAG 842 (1060)
T ss_pred hhhhccccccccchHHHHHHHHHHHHHCC
Confidence 22467999999998875
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4e-57 Score=413.22 Aligned_cols=384 Identities=21% Similarity=0.316 Sum_probs=339.5
Q ss_pred ChHhHHHHHHhhcC-CCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHH
Q 035749 1 MEAAALFTKLKAFG-CEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKA 79 (405)
Q Consensus 1 ~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 79 (405)
++|+++|+.|...+ ..||..+|+.++.++.+.++++.|.+++..+.+.+ +.|+..+|+.++..|++.|+++.|
T Consensus 104 ~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g------~~~~~~~~n~Li~~y~k~g~~~~A 177 (697)
T PLN03081 104 REALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG------FEPDQYMMNRVLLMHVKCGMLIDA 177 (697)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC------CCcchHHHHHHHHHHhcCCCHHHH
Confidence 36889999998764 67899999999999999999999999999999888 788999999999999999999999
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 80 KELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
.++|++|.+ ||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|.+.|..+.+.+++..+.+.
T Consensus 178 ~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~ 253 (697)
T PLN03081 178 RRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKT 253 (697)
T ss_pred HHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 999999864 6889999999999999999999999999999999999999999999999889888898888888888
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHH
Q 035749 160 GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYN 239 (405)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (405)
|+.+|..+++.++.+|++.|++++|.++|+.|. +++..+|+.++.+|++.|+.++|.++|++|...|+.||..||+
T Consensus 254 g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~ 329 (697)
T PLN03081 254 GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFS 329 (697)
T ss_pred CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 888888889999999999999999999888885 4578889999999999999999999999988888888888999
Q ss_pred HHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC
Q 035749 240 TLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSG 319 (405)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 319 (405)
.++.+|++.|++++|.+++..|.+.|++||..+++.++.+|++.|++++|.++|+.|. .||..+|+.++.+|++.|
T Consensus 330 ~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G 405 (697)
T PLN03081 330 IMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHG 405 (697)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcC
Confidence 9999999999999999999888888888888888888888888888888888888876 467788888888888888
Q ss_pred CHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHccCchhHHHHHH
Q 035749 320 RLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEA-KGVAPDCVAFNTLMLGCIRNNETSKVVELL 398 (405)
Q Consensus 320 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 398 (405)
+.++|.++|++|.+.|+.||..+|+.++.+|.+.|..++|.++|+.|.+ .|+.|+..+|..++.+|.+.|++++|.+++
T Consensus 406 ~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~ 485 (697)
T PLN03081 406 RGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMI 485 (697)
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888875 488888888888888888888888888888
Q ss_pred HHhh
Q 035749 399 HRMD 402 (405)
Q Consensus 399 ~~~~ 402 (405)
++|.
T Consensus 486 ~~~~ 489 (697)
T PLN03081 486 RRAP 489 (697)
T ss_pred HHCC
Confidence 8763
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.8e-56 Score=406.13 Aligned_cols=381 Identities=18% Similarity=0.293 Sum_probs=318.1
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHH
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKE 81 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 81 (405)
.|.+++..|.+.|+.||..+|+.++..|++.|+++.|.++|++|. .|+..+|+.++.+|++.|++++|++
T Consensus 141 ~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----------~~~~~t~n~li~~~~~~g~~~~A~~ 210 (697)
T PLN03081 141 CVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----------ERNLASWGTIIGGLVDAGNYREAFA 210 (697)
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----------CCCeeeHHHHHHHHHHCcCHHHHHH
Confidence 467888888888888888888888888888888888888888884 4677888888888888888888888
Q ss_pred HHHHHHhCCCCCChH-----------------------------------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 035749 82 LLLQMKDKNINPDVV-----------------------------------TYNSVIRGFCYANDSNEAKRLFIEMMDQGV 126 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~-----------------------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 126 (405)
+|++|.+.|+.|+.. +|+.|+.+|++.|++++|.++|++|.
T Consensus 211 lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---- 286 (697)
T PLN03081 211 LFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---- 286 (697)
T ss_pred HHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----
Confidence 888887766655544 45667777778888888888888774
Q ss_pred CccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 035749 127 QPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSIL 206 (405)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 206 (405)
++|..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++..+.+.|++|+..+++.+
T Consensus 287 ~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~L 366 (697)
T PLN03081 287 EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL 366 (697)
T ss_pred CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHH
Confidence 34778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCCh
Q 035749 207 INGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYI 286 (405)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 286 (405)
+.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..+|..++.+|.+.|..
T Consensus 367 i~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~ 442 (697)
T PLN03081 367 VDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLS 442 (697)
T ss_pred HHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcH
Confidence 8888888888888888888753 577888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHh-cCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 035749 287 VEALELFRTLRI-LKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLD 365 (405)
Q Consensus 287 ~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 365 (405)
++|.++|+.|.+ .++.|+..+|+.++.+|.+.|++++|.++++++. ..|+..+|+.++.+|...|+++.|..++++
T Consensus 443 ~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~---~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~ 519 (697)
T PLN03081 443 EQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP---FKPTVNMWAALLTACRIHKNLELGRLAAEK 519 (697)
T ss_pred HHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 888888888865 5778888888888888888888888888888764 567888888888888888888888888888
Q ss_pred HHhCCCCC-CHHHHHHHHHHHHccCchhHHHHHHHHhhhcC
Q 035749 366 MEAKGVAP-DCVAFNTLMLGCIRNNETSKVVELLHRMDERN 405 (405)
Q Consensus 366 ~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 405 (405)
+.+. .| +..+|..++..|.+.|++++|.+++++|.++|
T Consensus 520 l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 520 LYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 8754 44 46688888899999999999999999998775
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.4e-56 Score=414.64 Aligned_cols=381 Identities=19% Similarity=0.323 Sum_probs=297.9
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHH
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKE 81 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 81 (405)
+|+++|++|.+.|+.||..+|+.++.++++.|+.+.|.+++..+.+.+ ..|+..+|+.++..|++.|++++|.+
T Consensus 271 eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g------~~~d~~~~n~Li~~y~k~g~~~~A~~ 344 (857)
T PLN03077 271 EGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG------FAVDVSVCNSLIQMYLSLGSWGEAEK 344 (857)
T ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC------CccchHHHHHHHHHHHhcCCHHHHHH
Confidence 566777777777777777777777777777777777777777777666 66777777777777777777777777
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 035749 82 LLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGV 161 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (405)
+|++|. .||..+|+.++.+|.+.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+++.+.++++.+.+.|+
T Consensus 345 vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~ 420 (857)
T PLN03077 345 VFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGL 420 (857)
T ss_pred HHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCC
Confidence 777765 3466777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHH
Q 035749 162 RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTL 241 (405)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (405)
.|+..+++.++.+|++.|++++|.++|++|.+ ++..+|+.++.+|++.|+.++|+.+|++|.. ++.||..+|+.+
T Consensus 421 ~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~l 495 (857)
T PLN03077 421 ISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAA 495 (857)
T ss_pred CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHH
Confidence 77777777777777777777777777777653 4666777777777777777777777777765 467777777777
Q ss_pred HHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCH
Q 035749 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRL 321 (405)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 321 (405)
+.+|.+.|+.+.+.+++..+.+.|+.++..+++.++.+|++.|++++|..+|+.+ .+|..+|+.++.+|++.|+.
T Consensus 496 L~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~ 570 (857)
T PLN03077 496 LSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKG 570 (857)
T ss_pred HHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCH
Confidence 7777777777777777777777777777777778888888888888888887765 57888888888889899999
Q ss_pred HHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHccCchhHHHHHHHH
Q 035749 322 KIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDME-AKGVAPDCVAFNTLMLGCIRNNETSKVVELLHR 400 (405)
Q Consensus 322 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 400 (405)
++|.++|++|.+.|+.||..+|+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|..++.+|.+.|++++|.+++++
T Consensus 571 ~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 571 SMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999988888888899999999999889999999999999888 568888888899999999999999999988888
Q ss_pred hh
Q 035749 401 MD 402 (405)
Q Consensus 401 ~~ 402 (405)
|.
T Consensus 651 m~ 652 (857)
T PLN03077 651 MP 652 (857)
T ss_pred CC
Confidence 73
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.3e-55 Score=412.59 Aligned_cols=383 Identities=24% Similarity=0.380 Sum_probs=275.1
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHH
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKE 81 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 81 (405)
+|+++|++|...|+.||..+|+.++++++..+++..+.+++..+.+.+ ..|+..+++.++.+|++.|+++.|.+
T Consensus 170 ~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~~~n~Li~~y~k~g~~~~A~~ 243 (857)
T PLN03077 170 EALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG------FELDVDVVNALITMYVKCGDVVSARL 243 (857)
T ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcC------CCcccchHhHHHHHHhcCCCHHHHHH
Confidence 567777777777777777777666666666666666666666666555 55666666777777777777777777
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 035749 82 LLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGV 161 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (405)
+|++|.. ||..+|+.++.+|++.|++++|+++|.+|...|+.||..+|+.++.+|.+.|+.+.+.+++..+.+.|+
T Consensus 244 lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~ 319 (857)
T PLN03077 244 VFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGF 319 (857)
T ss_pred HHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Confidence 7777653 466677777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHH
Q 035749 162 RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTL 241 (405)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (405)
.||..+|+.++.+|++.|++++|.++|++|. .|+..+|+.++.+|++.|++++|+++|++|.+.|+.||..+|+.+
T Consensus 320 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~l 395 (857)
T PLN03077 320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASV 395 (857)
T ss_pred ccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHH
Confidence 7777777777777777777777777777764 356667777777777777777777777777777777777777777
Q ss_pred HHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhc----------------------
Q 035749 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRIL---------------------- 299 (405)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------- 299 (405)
+.+|++.|+++.|.+++..+.+.|..|+..+++.++.+|++.|++++|.++|++|.+.
T Consensus 396 l~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~ 475 (857)
T PLN03077 396 LSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEAL 475 (857)
T ss_pred HHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHH
Confidence 7777777777777777777776666666666666666666666666666666555321
Q ss_pred --------CCCccHHHHH-----------------------------------HHHHHHHhcCCHHHHHHHHhhccCCCc
Q 035749 300 --------KCELDIRSYS-----------------------------------CLIDGLCKSGRLKIAWELFHSLPRGVL 336 (405)
Q Consensus 300 --------~~~~~~~~~~-----------------------------------~l~~~~~~~~~~~~a~~~~~~~~~~~~ 336 (405)
+.+||..+|. .++.+|.++|++++|.++|+.+
T Consensus 476 ~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----- 550 (857)
T PLN03077 476 IFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----- 550 (857)
T ss_pred HHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----
Confidence 1233333333 3334444444555555555444
Q ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhh
Q 035749 337 IADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDE 403 (405)
Q Consensus 337 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 403 (405)
.||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||..++.+|.+.|++++|.++|++|.+
T Consensus 551 ~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~ 617 (857)
T PLN03077 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEE 617 (857)
T ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHH
Confidence 4577889999999999999999999999999999999999999999999999999999999999983
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.8e-30 Score=248.91 Aligned_cols=383 Identities=15% Similarity=0.106 Sum_probs=277.4
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHH
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKE 81 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 81 (405)
+|++.|+.+.+.+ +.+..++..+...+.+.|++++|..+|+++.+.+ +.+...+..++..+...|++++|..
T Consensus 517 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~ 588 (899)
T TIGR02917 517 DAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-------PQEIEPALALAQYYLGKGQLKKALA 588 (899)
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------ccchhHHHHHHHHHHHCCCHHHHHH
Confidence 4555555555443 3344555555666666666666666666665543 3445556666666666677777777
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 035749 82 LLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGV 161 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (405)
+++.+.+.. +.+...|..++.++...|++++|...|+++.+... .+...+..+..++...|++++|...++++.+..
T Consensus 589 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 665 (899)
T TIGR02917 589 ILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK- 665 (899)
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 766666543 45566677777777777777777777777766532 255566666777777777777777777776653
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHH
Q 035749 162 RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTL 241 (405)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (405)
+.+..++..++..+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...|+++...+ |+..++..+
T Consensus 666 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l 742 (899)
T TIGR02917 666 PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKL 742 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHH
Confidence 4456667777777777777777777777776664 4566677777777788888888888888877753 444666677
Q ss_pred HHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCH
Q 035749 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRL 321 (405)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 321 (405)
..++...|++++|...+..+.+.. +.+...+..+...+...|++++|...|+++.+.. +.++.++..++..+...|+
T Consensus 743 ~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~- 819 (899)
T TIGR02917 743 HRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD- 819 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-
Confidence 778888888888888888887764 5677778888888888888888888888888765 6677888888888888888
Q ss_pred HHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHh
Q 035749 322 KIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRM 401 (405)
Q Consensus 322 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 401 (405)
.+|+..++++.+.. +.+...+..++..+...|++++|..+++++++.+. .+..++..++.++.+.|++++|.+++++|
T Consensus 820 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 820 PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77888888877652 23566777888889999999999999999998753 38889999999999999999999999998
Q ss_pred hh
Q 035749 402 DE 403 (405)
Q Consensus 402 ~~ 403 (405)
++
T Consensus 898 ~~ 899 (899)
T TIGR02917 898 LN 899 (899)
T ss_pred hC
Confidence 64
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.2e-29 Score=240.34 Aligned_cols=385 Identities=12% Similarity=0.038 Sum_probs=224.4
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHH
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKE 81 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 81 (405)
+|+.+++.+.... ++++.+|..+...+...|++++|.+.|+++.+.. +.+...+..++..+...|++++|.+
T Consensus 449 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~ 520 (899)
T TIGR02917 449 KALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-------PDFFPAAANLARIDIQEGNPDDAIQ 520 (899)
T ss_pred HHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-------CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 5666777666543 4556667777777777777777777777776654 3445555666666666666666666
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 035749 82 LLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGV 161 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (405)
.++++.+.+ +.+..++..+...+.+.|+.++|..+++++...+. .+...+..++..+...|++++|..+++.+.+..
T Consensus 521 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 597 (899)
T TIGR02917 521 RFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA- 597 (899)
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-
Confidence 666665543 33455555555555555555555555555544422 233444444455555555555555555544432
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC---------------------------------CCCChhhHHHHHH
Q 035749 162 RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMG---------------------------------CKHNVFSYSILIN 208 (405)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~ 208 (405)
+.+...+..++.++...|++++|...++.+.+.. .+.+..++..++.
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 677 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQ 677 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 3344444444555555555555555555444432 0233444444444
Q ss_pred HHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHH
Q 035749 209 GYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVE 288 (405)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 288 (405)
.+...|++++|..+++.+.... +++...+..+...+...|++++|...+..+...+ |+..++..++.++.+.|++++
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHH
Confidence 4445555555555555444432 2334445555555666666666666666665543 333455556666666666666
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 035749 289 ALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEA 368 (405)
Q Consensus 289 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 368 (405)
|...++.+.... +.+...+..++..|...|++++|...|+++.+.. +++..+++.++..+...|+ .+|+..++++.+
T Consensus 755 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~ 831 (899)
T TIGR02917 755 AVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALK 831 (899)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh
Confidence 666666666544 4566666667777777777777777777766553 3356667777777777777 667777777766
Q ss_pred CCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhc
Q 035749 369 KGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDER 404 (405)
Q Consensus 369 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 404 (405)
. .+.++.++..+..++...|++++|.+.++++.+.
T Consensus 832 ~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 832 L-APNIPAILDTLGWLLVEKGEADRALPLLRKAVNI 866 (899)
T ss_pred h-CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5 2334556666777777888888888888877654
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.96 E-value=7.2e-24 Score=192.06 Aligned_cols=369 Identities=14% Similarity=0.039 Sum_probs=292.3
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHH
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNS 100 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (405)
.+......+.+.|++++|+..|+++++.. |++..|..+..+|.+.|++++|++.++...+.. +.+...+..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~--------p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~ 199 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECK--------PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNR 199 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHH
Confidence 35577888999999999999999999854 677889999999999999999999999999875 557789999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-----------------------------CccHhhHHHHHH-------------
Q 035749 101 VIRGFCYANDSNEAKRLFIEMMDQGV-----------------------------QPNVVTFSVIMD------------- 138 (405)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~-----------------------------~~~~~~~~~l~~------------- 138 (405)
+..++...|++++|+..|..+...+. +++...+..+..
T Consensus 200 ~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (615)
T TIGR00990 200 RANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAG 279 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhh
Confidence 99999999999999876654432110 000000000000
Q ss_pred -----------------H------HHcCCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 035749 139 -----------------E------LCKNGKMEEASQLLELMIQIG--VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMES 193 (405)
Q Consensus 139 -----------------~------~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (405)
. ....+++++|.+.|+...+.+ .+.....+..+..++...|++++|+..+++..+
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~ 359 (615)
T TIGR00990 280 LEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE 359 (615)
T ss_pred hhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0 012357889999999998764 233456788888899999999999999999988
Q ss_pred cCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHH
Q 035749 194 MGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAY 273 (405)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 273 (405)
.. +.....|..+...+...|++++|+..|+++++.. +.+...+..+...+...|++++|...|++.++.. +.+...+
T Consensus 360 l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~ 436 (615)
T TIGR00990 360 LD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSH 436 (615)
T ss_pred cC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHH
Confidence 74 4456788899999999999999999999998863 3456788889999999999999999999999875 5567778
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccH------HHHHHHH
Q 035749 274 RTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADV------VTYNIMI 347 (405)
Q Consensus 274 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~ 347 (405)
..+..++.+.|++++|+..+++..... +.+...++.++..+...|++++|...|++..+.....+. ..++..+
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~ 515 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKAL 515 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHH
Confidence 888999999999999999999998764 567888999999999999999999999998764221111 1122223
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhh
Q 035749 348 HALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDE 403 (405)
Q Consensus 348 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 403 (405)
..+...|++++|..+++++...+ +.+...+..++..+.+.|++++|.+++++..+
T Consensus 516 ~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 516 ALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33445799999999999998863 33556788899999999999999999998754
No 10
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=1.7e-25 Score=185.78 Aligned_cols=368 Identities=16% Similarity=0.111 Sum_probs=309.2
Q ss_pred CChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh-
Q 035749 17 PNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDV- 95 (405)
Q Consensus 17 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 95 (405)
.-..+|..+...+-..|+++.|+.+++.+++.. |...+.|..+..++...|+.+.|.+.|.+..+.+ |+.
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-------p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ 184 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAIELK-------PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLY 184 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-------chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchh
Confidence 345789999999999999999999999999975 5678899999999999999999999999998863 443
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 035749 96 VTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGF 175 (405)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (405)
.....+...+...|++.+|...|.+.++..+. -...|+.|...+..+|+...|++.|++..+.+ +.-...|..|...|
T Consensus 185 ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ 262 (966)
T KOG4626|consen 185 CARSDLGNLLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVY 262 (966)
T ss_pred hhhcchhHHHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHH
Confidence 33445666666789999999999998876332 45678888888999999999999999998874 44567889999999
Q ss_pred HccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHH
Q 035749 176 CLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAF 255 (405)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 255 (405)
...+.+++|...|.+..... +....++..+...|...|..+-|+..|++.++.. +.=...|+.+..++-..|++.+|.
T Consensus 263 ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~ 340 (966)
T KOG4626|consen 263 KEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAV 340 (966)
T ss_pred HHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHH
Confidence 99999999999999988764 5567788888888999999999999999998863 223468999999999999999999
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCC
Q 035749 256 KLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGV 335 (405)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 335 (405)
..+.+.+... +......+.+...+...|.++.|..+|....+.. +--...++.|+..|...|++++|+..+++..+
T Consensus 341 ~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr-- 416 (966)
T KOG4626|consen 341 DCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR-- 416 (966)
T ss_pred HHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--
Confidence 9999998874 4567788899999999999999999999988764 34456788999999999999999999999887
Q ss_pred cCcc-HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCchhHHHHHHHHhhh
Q 035749 336 LIAD-VVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPD-CVAFNTLMLGCIRNNETSKVVELLHRMDE 403 (405)
Q Consensus 336 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 403 (405)
+.|+ ...|+.+...|-..|+.+.|++.+.+++.. .|. ...++.|...|-.+|+..+|+..+++..+
T Consensus 417 I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 417 IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 4555 568899999999999999999999999874 444 45778889999999999999999988764
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=1.2e-23 Score=202.60 Aligned_cols=385 Identities=13% Similarity=0.067 Sum_probs=265.3
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHH------------HHHHHH
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVI------------YTTIID 68 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~------------~~~l~~ 68 (405)
++|+..|+..++.. +.+..++..+...+.+.|++++|+..|+++++..+.. +.... ......
T Consensus 286 ~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~-----~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 286 GKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHS-----SNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----cchhHHHHHHHhhhHHHHHHHHH
Confidence 47899999998874 4578899999999999999999999999999876321 11111 123355
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHH--------
Q 035749 69 GLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDEL-------- 140 (405)
Q Consensus 69 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-------- 140 (405)
.+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.|+++++.... +...+..+...+
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A 437 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKA 437 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHH
Confidence 6778999999999999999874 557788888999999999999999999999876432 344444444443
Q ss_pred ----------------------------------HcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 035749 141 ----------------------------------CKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKE 186 (405)
Q Consensus 141 ----------------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 186 (405)
...|++++|+..+++.++.. +.+...+..+...|...|++++|..
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 23445555555555554442 2233444445555555555555555
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchh---------hHHHHHHHHHccccHHHHHHH
Q 035749 187 LFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVV---------TYNTLFIGLFEIHQVERAFKL 257 (405)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~a~~~ 257 (405)
.++++.+.. +.++..+..+...+...++.++|+..++.+......++.. .+......+...|+.++|..+
T Consensus 517 ~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 517 LMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 555554432 2233333333333444455555555554433221111110 111233445566777777766
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcC
Q 035749 258 FDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLI 337 (405)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 337 (405)
++ . .+.+...+..+...+.+.|++++|+..|+++.... |.+...+..++..+...|++++|.+.++.+.+.. +
T Consensus 596 l~----~-~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p 668 (1157)
T PRK11447 596 LR----Q-QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-N 668 (1157)
T ss_pred HH----h-CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-C
Confidence 65 1 25566677788889999999999999999999875 6678899999999999999999999999887652 2
Q ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC--CC---CHHHHHHHHHHHHccCchhHHHHHHHHhh
Q 035749 338 ADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGV--AP---DCVAFNTLMLGCIRNNETSKVVELLHRMD 402 (405)
Q Consensus 338 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 402 (405)
.+...+..+..++...|++++|.+++++++.... +| +...+..+...+...|++++|...+++..
T Consensus 669 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3566677788889999999999999999987522 12 22456667888999999999999999875
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=5.9e-24 Score=183.48 Aligned_cols=306 Identities=13% Similarity=0.091 Sum_probs=248.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc---HhhHHHHHHHH
Q 035749 64 TTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPN---VVTFSVIMDEL 140 (405)
Q Consensus 64 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~ 140 (405)
......+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..++..|
T Consensus 39 y~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 39 YFKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY 117 (389)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 333455678899999999999999874 55677899999999999999999999999987532222 24677888999
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHhhcCCh
Q 035749 141 CKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHN----VFSYSILINGYCKNKEI 216 (405)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~ 216 (405)
...|++++|..+|+++.+.. +.+..++..++..+...|++++|.+.++.+...+..+. ...+..++..+.+.|++
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL 196 (389)
T ss_pred HHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence 99999999999999998764 55678889999999999999999999999987653222 12455677788899999
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 035749 217 EGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTL 296 (405)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 296 (405)
++|...++++.+.. +.+...+..+...+...|++++|...++++...+......++..++.+|...|++++|...++++
T Consensus 197 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 197 DAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998763 33455777788899999999999999999987642223456788889999999999999999998
Q ss_pred HhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCC
Q 035749 297 RILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCA---DGKMDKAHDLFLDMEAKGVAP 373 (405)
Q Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~ 373 (405)
.... |+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..+++++.+.++.|
T Consensus 276 ~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (389)
T PRK11788 276 LEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKR 351 (389)
T ss_pred HHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhC
Confidence 8763 55566788899999999999999999988775 5788888887777664 568999999999999877777
Q ss_pred CHH
Q 035749 374 DCV 376 (405)
Q Consensus 374 ~~~ 376 (405)
++.
T Consensus 352 ~p~ 354 (389)
T PRK11788 352 KPR 354 (389)
T ss_pred CCC
Confidence 665
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=6.3e-24 Score=183.29 Aligned_cols=307 Identities=13% Similarity=0.098 Sum_probs=253.8
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---hHHH
Q 035749 22 YSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPD---VVTY 98 (405)
Q Consensus 22 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~ 98 (405)
.......+...|++++|+..|+++.+.+ |.+..++..+...+...|++++|..+++.+...+..++ ...+
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 110 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVD-------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLAL 110 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 3344556778899999999999999876 56678999999999999999999999999987532211 2567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHH
Q 035749 99 NSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPN----AFVYNTLMDG 174 (405)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~ 174 (405)
..++..+...|++++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..++..
T Consensus 111 ~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 189 (389)
T PRK11788 111 QELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ 189 (389)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 888999999999999999999998763 34678899999999999999999999999988753222 2245567788
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHH
Q 035749 175 FCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERA 254 (405)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 254 (405)
+...|++++|...++++.+.. +.+...+..+...+.+.|++++|.++++++...+......++..++.+|...|++++|
T Consensus 190 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 190 ALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence 899999999999999998864 4556788889999999999999999999998764333345678889999999999999
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh---cCCHHHHHHHHhhc
Q 035749 255 FKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCK---SGRLKIAWELFHSL 331 (405)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~ 331 (405)
...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..+++++
T Consensus 269 ~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 269 LEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred HHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 9999999886 356666688899999999999999999998876 5777788877777664 55899999999998
Q ss_pred cCCCcCccHH
Q 035749 332 PRGVLIADVV 341 (405)
Q Consensus 332 ~~~~~~~~~~ 341 (405)
.+.++.|++.
T Consensus 345 ~~~~~~~~p~ 354 (389)
T PRK11788 345 VGEQLKRKPR 354 (389)
T ss_pred HHHHHhCCCC
Confidence 8766665554
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.95 E-value=9.3e-23 Score=184.21 Aligned_cols=332 Identities=14% Similarity=0.065 Sum_probs=273.3
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHH
Q 035749 22 YSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSV 101 (405)
Q Consensus 22 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 101 (405)
...++..+.+.|++++|..+++..+... +.+...+..++.+....|++++|...++++.... |.+...+..+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-------p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~l 116 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-------KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLV 116 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-------CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 4556777889999999999999999875 5567788888888889999999999999999875 6678889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 035749 102 IRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181 (405)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 181 (405)
...+...|++++|...++++....+ .+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++
T Consensus 117 a~~l~~~g~~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~ 193 (656)
T PRK15174 117 ASVLLKSKQYATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRL 193 (656)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCH
Confidence 9999999999999999999988633 367788888999999999999999999887764 3344444443 347889999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHH----HHHH
Q 035749 182 NRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVER----AFKL 257 (405)
Q Consensus 182 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~ 257 (405)
++|...++.+......++......+...+...|++++|+..++++.... +.+...+..+...+...|++++ |...
T Consensus 194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~ 272 (656)
T PRK15174 194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEH 272 (656)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHH
Confidence 9999999998776433444455566778889999999999999998864 3456677788899999999885 8999
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcC
Q 035749 258 FDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLI 337 (405)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 337 (405)
++++.+.. |.+...+..+...+...|++++|...++++.... +.+...+..++.++...|++++|...|+.+... .
T Consensus 273 ~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~ 348 (656)
T PRK15174 273 WRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--K 348 (656)
T ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--C
Confidence 99998874 5577888899999999999999999999998875 556777888999999999999999999998875 3
Q ss_pred ccH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 338 ADV-VTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 338 ~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
|+. ..+..+..++...|++++|...|+++.+.
T Consensus 349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 333 34445677888999999999999999876
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.95 E-value=6.4e-23 Score=185.25 Aligned_cols=361 Identities=11% Similarity=0.007 Sum_probs=290.3
Q ss_pred HhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcC
Q 035749 30 CRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYAN 109 (405)
Q Consensus 30 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 109 (405)
.+..+++.-.-+|....+.... ...+..-...++..+.+.|++++|+.+++...... +-+...+..++.+....|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g 90 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRD----SAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASS 90 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhh----hcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcC
Confidence 4556666655555554432210 11233446677788889999999999999998874 556777778888888999
Q ss_pred CHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 035749 110 DSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFV 189 (405)
Q Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 189 (405)
++++|...++++....+. +...+..+...+...|++++|...++++.+.. +.+...+..++.++...|++++|...++
T Consensus 91 ~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~ 168 (656)
T PRK15174 91 QPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLAR 168 (656)
T ss_pred CHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 999999999999987443 67788889999999999999999999999874 5567888899999999999999999999
Q ss_pred HHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCcc
Q 035749 190 SMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAAD 269 (405)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 269 (405)
.+.... +.+...+..+ ..+...|++++|...++.+......++......+...+...|++++|...+.++.+.. +.+
T Consensus 169 ~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~ 245 (656)
T PRK15174 169 TQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDG 245 (656)
T ss_pred HHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCC
Confidence 887664 3344444444 3478899999999999998876433444455556778889999999999999999875 567
Q ss_pred HHHHHHHHHHHhcCCChHH----HHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHH
Q 035749 270 TWAYRTFIDGLCKNGYIVE----ALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNI 345 (405)
Q Consensus 270 ~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 345 (405)
...+..+...+...|++++ |...++++.... |.+...+..++..+...|++++|...++++.+.. +.+...+..
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~ 323 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAM 323 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 7888889999999999986 899999998875 6678899999999999999999999999988753 235667888
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCchhHHHHHHHHhhhc
Q 035749 346 MIHALCADGKMDKAHDLFLDMEAKGVAPDC-VAFNTLMLGCIRNNETSKVVELLHRMDER 404 (405)
Q Consensus 346 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 404 (405)
+..++...|++++|+..++++... .|+. ..+..+..++...|++++|...+++..+.
T Consensus 324 La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 324 YARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 899999999999999999999985 3443 33444567889999999999999987653
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=7.3e-24 Score=176.16 Aligned_cols=366 Identities=14% Similarity=0.070 Sum_probs=310.3
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHH
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAK 80 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (405)
++|+..++.+.+.. +.....|..+..++...|+.+.|.+.|-++++.+ |........+...+-..|+.++|.
T Consensus 133 ~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln-------P~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 133 QDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN-------PDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC-------cchhhhhcchhHHHHhhcccchhH
Confidence 36888999998874 4467899999999999999999999999999975 333445555666666789999999
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 035749 81 ELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIG 160 (405)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (405)
..|.+.++.. +-=...|..|...+..+|++..|++.|++..+..+. -...|..|...|...+.++.|...+.+.....
T Consensus 205 ~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 205 ACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 9999988763 334677999999999999999999999999886432 36788899999999999999999999998774
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHH
Q 035749 161 VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNT 240 (405)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (405)
+.....+..+...|...|..+-|+..|++..+.. |.-+.+|+.|..++-..|+..+|.+.|.+.+... +......+.
T Consensus 283 -pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~N 359 (966)
T KOG4626|consen 283 -PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNN 359 (966)
T ss_pred -CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHH
Confidence 4456778899999999999999999999999885 5568899999999999999999999999999863 335667889
Q ss_pred HHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC
Q 035749 241 LFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGR 320 (405)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 320 (405)
+...+.+.|.+++|..+|....+-. +.-....+.+...|-++|++++|+..++++.+.. |.-...++.+...|-..|+
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~-P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK-PTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC-chHHHHHHhcchHHHHhhh
Confidence 9999999999999999999998763 4446678899999999999999999999998764 4456789999999999999
Q ss_pred HHHHHHHHhhccCCCcCc-cHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 035749 321 LKIAWELFHSLPRGVLIA-DVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPD-CVAFNTLMLGC 385 (405)
Q Consensus 321 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~ 385 (405)
.+.|.+.+.+.+.. .| =...++.|...|-..|+..+|+.-+++.++. .|| +..+..++.+.
T Consensus 438 v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHH
Confidence 99999999999875 34 3678999999999999999999999999985 554 34566665544
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=2.4e-22 Score=182.19 Aligned_cols=355 Identities=15% Similarity=0.038 Sum_probs=280.5
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHH
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAK 80 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (405)
++|+..|+...+. .|+...|..+..+|...|++++|+..++++++.+ |.+..++..+..++...|++++|+
T Consensus 144 ~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-------p~~~~a~~~~a~a~~~lg~~~eA~ 214 (615)
T TIGR00990 144 NKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-------PDYSKALNRRANAYDGLGKYADAL 214 (615)
T ss_pred HHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4689999998876 5788889999999999999999999999999876 567889999999999999999998
Q ss_pred HHHHHHHhCC-----------------------------CCCChHHHHHHHH----------------------------
Q 035749 81 ELLLQMKDKN-----------------------------INPDVVTYNSVIR---------------------------- 103 (405)
Q Consensus 81 ~~~~~~~~~~-----------------------------~~~~~~~~~~l~~---------------------------- 103 (405)
..|..+...+ .+++...+..+..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (615)
T TIGR00990 215 LDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQ 294 (615)
T ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccch
Confidence 7665443211 0111001111100
Q ss_pred --HH------HhcCCHHHHHHHHHHHHHCC-C-CccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 035749 104 --GF------CYANDSNEAKRLFIEMMDQG-V-QPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMD 173 (405)
Q Consensus 104 --~~------~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 173 (405)
.. ...+++++|.+.|+...+.+ . +.....+..+...+...|++++|+..+++.++.. +.....|..+..
T Consensus 295 ~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~ 373 (615)
T TIGR00990 295 LQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRAS 373 (615)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHH
Confidence 00 11257889999999998764 2 2245677888888999999999999999999874 445678889999
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHH
Q 035749 174 GFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVER 253 (405)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 253 (405)
++...|++++|...++++.+.. +.+..++..+...+...|++++|+..|++.+... +.+...+..+...+.+.|++++
T Consensus 374 ~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~e 451 (615)
T TIGR00990 374 MNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIAS 451 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999998875 5678899999999999999999999999999874 3356677788889999999999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccH------HHHHHHHHHHHhcCCHHHHHHH
Q 035749 254 AFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDI------RSYSCLIDGLCKSGRLKIAWEL 327 (405)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~ 327 (405)
|...++..++.. +.++..+..+..++...|++++|...|++........+. ..++..+..+...|++++|..+
T Consensus 452 A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~ 530 (615)
T TIGR00990 452 SMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENL 530 (615)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 999999998764 566888999999999999999999999998876422111 1122223334457999999999
Q ss_pred HhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 328 FHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
+++..+.. +.+...+..++..+...|++++|+..|+++.+.
T Consensus 531 ~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 531 CEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99987753 234567889999999999999999999999875
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=3.2e-22 Score=192.88 Aligned_cols=362 Identities=12% Similarity=0.053 Sum_probs=252.8
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-ChHHH----
Q 035749 24 TLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINP-DVVTY---- 98 (405)
Q Consensus 24 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~---- 98 (405)
.....+...|++++|+..|+++++.. |.+..++..+..++.+.|++++|+..|++..+..... ....+
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~-------P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRAN-------PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 34567788999999999999999875 5678899999999999999999999999998764211 11112
Q ss_pred --------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 035749 99 --------NSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNT 170 (405)
Q Consensus 99 --------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (405)
......+.+.|++++|+..|+++++..+ .+...+..+..++...|++++|++.|+++.+.. +.+...+..
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~ 424 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRG 424 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 1224567789999999999999998744 366778888999999999999999999998874 334444444
Q ss_pred HHHHH------------------------------------------HccCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 035749 171 LMDGF------------------------------------------CLTGRVNRAKELFVSMESMGCKHNVFSYSILIN 208 (405)
Q Consensus 171 l~~~~------------------------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 208 (405)
+...+ ...|++++|...+++..+.. |.+...+..+..
T Consensus 425 L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~ 503 (1157)
T PRK11447 425 LANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQ 503 (1157)
T ss_pred HHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44433 33455555555555555543 334444555555
Q ss_pred HHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccH---------HHHHHHHHH
Q 035749 209 GYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADT---------WAYRTFIDG 279 (405)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~ 279 (405)
.|.+.|++++|...++++.... +.+...+..+...+...++.++|...++.+......++. ..+......
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~ 582 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR 582 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH
Confidence 5555556666665555555432 112222323333344455555555555544322111111 111233455
Q ss_pred HhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHH
Q 035749 280 LCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKA 359 (405)
Q Consensus 280 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 359 (405)
+...|+.++|..+++. .+.+...+..++..+...|++++|+..|+++.+.. +.+...+..++..+...|++++|
T Consensus 583 l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA 656 (1157)
T PRK11447 583 LRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAA 656 (1157)
T ss_pred HHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 6667777777777661 25666778889999999999999999999988763 33678899999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhh
Q 035749 360 HDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDE 403 (405)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 403 (405)
++.++.+.+. -+.+...+..+..++...|++++|.++++++.+
T Consensus 657 ~~~l~~ll~~-~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 657 RAQLAKLPAT-ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HHHHHHHhcc-CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 9999988875 233556677788889999999999999998865
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.94 E-value=9.9e-22 Score=181.34 Aligned_cols=386 Identities=13% Similarity=0.043 Sum_probs=280.9
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHH
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKE 81 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 81 (405)
+|+++|....... +.+...+..+...+...|++++|..+|+++++.. |.++..+..++..+...|++++|+.
T Consensus 33 ~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~la~~l~~~g~~~eA~~ 104 (765)
T PRK10049 33 EVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-------PQNDDYQRGLILTLADAGQYDEALV 104 (765)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 6777888877632 4455568888888888888888888888888765 5567777788888888888888888
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 035749 82 LLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGV 161 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (405)
.++++.+.. |.+.. +..+..++...|+.++|+..++++.+..+. +...+..+..++...+..++|+..++.+..
T Consensus 105 ~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~--- 178 (765)
T PRK10049 105 KAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANL--- 178 (765)
T ss_pred HHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCC---
Confidence 888887763 55566 778888888888888888888888876443 555666677777788888888888876553
Q ss_pred CCCH------HHHHHHHHHHHc-----cCCH---HHHHHHHHHHHhc-CCCCChh-hH----HHHHHHHhhcCChHHHHH
Q 035749 162 RPNA------FVYNTLMDGFCL-----TGRV---NRAKELFVSMESM-GCKHNVF-SY----SILINGYCKNKEIEGALS 221 (405)
Q Consensus 162 ~~~~------~~~~~l~~~~~~-----~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~~~~~~a~~ 221 (405)
.|+. ......++.... .+++ ++|+..++.+.+. ...|+.. .+ ...+..+...|++++|+.
T Consensus 179 ~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~ 258 (765)
T PRK10049 179 TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVIS 258 (765)
T ss_pred CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 1211 111222222221 1233 6778888887754 1122221 11 111334567799999999
Q ss_pred HHHHHHhCCCC-CchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCc---cHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 035749 222 LYSEMLSKGIK-PTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAA---DTWAYRTFIDGLCKNGYIVEALELFRTLR 297 (405)
Q Consensus 222 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 297 (405)
.|+++.+.+.+ |+. ....+...+...|++++|...|+.+.+..... .......+..++...|++++|..+++.+.
T Consensus 259 ~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~ 337 (765)
T PRK10049 259 EYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTI 337 (765)
T ss_pred HHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 99999887532 332 22235678999999999999999988653111 13455666778899999999999999988
Q ss_pred hcCC-----------Ccc---HHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHH
Q 035749 298 ILKC-----------ELD---IRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLF 363 (405)
Q Consensus 298 ~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 363 (405)
.... .|+ ...+..++..+...|++++|++.++++.... +.+...+..++..+...|++++|++.+
T Consensus 338 ~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l 416 (765)
T PRK10049 338 NNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENEL 416 (765)
T ss_pred hcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 6531 122 2355677888999999999999999988763 446788999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhc
Q 035749 364 LDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDER 404 (405)
Q Consensus 364 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 404 (405)
+++.+.. +.+...+...+..+...|++++|..+++++++.
T Consensus 417 ~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 417 KKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999862 335667777788899999999999999998764
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.92 E-value=2.8e-20 Score=171.82 Aligned_cols=383 Identities=8% Similarity=-0.009 Sum_probs=290.1
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHH
Q 035749 4 AALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELL 83 (405)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 83 (405)
+..++. .+.+ +.++....-.+.+....|+.++|++++.++.... +.....+..+...+...|++++|.++|
T Consensus 2 ~~~~~~-~~~~-~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-------~~~a~~~~~lA~~~~~~g~~~~A~~~~ 72 (765)
T PRK10049 2 LSWLRQ-ALKS-ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-------QLPARGYAAVAVAYRNLKQWQNSLTLW 72 (765)
T ss_pred chhhhh-hhcc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 445555 3332 5566667778888999999999999999998643 456778999999999999999999999
Q ss_pred HHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC
Q 035749 84 LQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRP 163 (405)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 163 (405)
++..+.. |.+...+..++..+...|++++|+..++++.+..+ .+.. +..+..++...|+.++|+..++++.+.. +.
T Consensus 73 ~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~ 148 (765)
T PRK10049 73 QKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQ 148 (765)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 9998874 56678888999999999999999999999998743 3556 8888999999999999999999999985 55
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCh------hhHHHHHHHHh-----hcCCh---HHHHHHHHHHHhC
Q 035749 164 NAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNV------FSYSILINGYC-----KNKEI---EGALSLYSEMLSK 229 (405)
Q Consensus 164 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~ 229 (405)
+...+..+..++...+..++|+..++.+... |+. ......+.... ..+++ ++|+..++.+.+.
T Consensus 149 ~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~---p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~ 225 (765)
T PRK10049 149 TQQYPTEYVQALRNNRLSAPALGAIDDANLT---PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEAL 225 (765)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhh
Confidence 6677777888888999999999999876641 221 11122222222 12234 7788888888864
Q ss_pred -CCCCchh-hHH----HHHHHHHccccHHHHHHHHHHHHHcCCC-ccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCC
Q 035749 230 -GIKPTVV-TYN----TLFIGLFEIHQVERAFKLFDEMQRHGVA-ADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCE 302 (405)
Q Consensus 230 -~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 302 (405)
...|+.. .+. ..+..+...|++++|...|+.+.+.+.+ |+ .....+..++...|++++|+..|+++......
T Consensus 226 ~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~ 304 (765)
T PRK10049 226 WHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPET 304 (765)
T ss_pred cccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCC
Confidence 2223221 111 1133456779999999999999987522 22 23333577899999999999999998765311
Q ss_pred c---cHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCc-----------Ccc---HHHHHHHHHHHHcCCCHHHHHHHHHH
Q 035749 303 L---DIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVL-----------IAD---VVTYNIMIHALCADGKMDKAHDLFLD 365 (405)
Q Consensus 303 ~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~ 365 (405)
. .......+..++...|++++|..+++.+.+... .|+ ...+..++..+...|++++|+.++++
T Consensus 305 ~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~ 384 (765)
T PRK10049 305 IADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARE 384 (765)
T ss_pred CCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 134566677788999999999999998876421 122 23456677888999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhc
Q 035749 366 MEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDER 404 (405)
Q Consensus 366 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 404 (405)
+... .+.+...+..++..+...|++++|.+.+++..+.
T Consensus 385 al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 385 LAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVL 422 (765)
T ss_pred HHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 9986 4557788889999999999999999999988753
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.90 E-value=1.9e-18 Score=156.95 Aligned_cols=386 Identities=11% Similarity=0.036 Sum_probs=251.4
Q ss_pred hHhHHHHHHhhcCCCCCh--hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHH
Q 035749 2 EAAALFTKLKAFGCEPNV--ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKA 79 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 79 (405)
+|+..|+..++.. |+. ..+ .++..+...|+.++|+..++++.... +........++..+...|++++|
T Consensus 52 ~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-------n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 52 PVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-------NISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-------CCCHHHHHHHHHHHHHcCCHHHH
Confidence 5777788877763 332 233 77777778888888888888887321 33344445556677788888888
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 80 KELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
+++|+++.+.. |.++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.+.
T Consensus 122 iely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 88888888774 445677777777888888888888888888765 344444444444444456665688888888777
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHH------------------------------------------------HH
Q 035749 160 GVRPNAFVYNTLMDGFCLTGRVNRAKELFV------------------------------------------------SM 191 (405)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~------------------------------------------------~~ 191 (405)
. +.+...+..+..++.+.|-...|.++.. .+
T Consensus 199 ~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 199 A-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred C-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 4 4455555555555555554444443332 11
Q ss_pred Hhc-CCCCCh-h----hHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcC
Q 035749 192 ESM-GCKHNV-F----SYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHG 265 (405)
Q Consensus 192 ~~~-~~~~~~-~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 265 (405)
... +..|.. . ...-.+-++...+++.++++.|+.+...+.+....+-..+..+|...+++++|..++..+....
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 110 001111 1 1122344566677788888888888776654334466677788888888888888888876542
Q ss_pred -----CCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCC-----------Ccc---HHHHHHHHHHHHhcCCHHHHHH
Q 035749 266 -----VAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKC-----------ELD---IRSYSCLIDGLCKSGRLKIAWE 326 (405)
Q Consensus 266 -----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~ 326 (405)
.+++......|.-++...+++++|..+++.+.+... .|+ ......++..+...|++.+|.+
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 122333346677788888888888888888776311 111 1233445666778888888888
Q ss_pred HHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhh
Q 035749 327 LFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDE 403 (405)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 403 (405)
.++.+.... +-|......+...+...|++.+|+..++.+... -+-+..+....+.++...|++.+|..+.+.+.+
T Consensus 438 ~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 438 KLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL-APRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 888876653 337777778888888888888888888666654 233455666677777788888888877766654
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.89 E-value=7.7e-18 Score=153.08 Aligned_cols=372 Identities=14% Similarity=0.087 Sum_probs=274.5
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHH
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVT 97 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (405)
.+.+-..-+-...+.|+++.|+..|+++++.+ |.++.....++..+...|+.++|+..+++..... +.....
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-------P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~ 104 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAG-------PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRG 104 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-------ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHH
Confidence 33344444555679999999999999999876 2332222388888889999999999999988321 223334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 035749 98 YNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCL 177 (405)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (405)
...++..+...|++++|+++|+++.+..+. +...+..++..+...++.++|++.++++... .|+...+..++..+..
T Consensus 105 llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~ 181 (822)
T PRK14574 105 LASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRA 181 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHh
Confidence 444466888999999999999999998554 5777778888999999999999999999877 4555556555555555
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHH----------------------------------
Q 035749 178 TGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLY---------------------------------- 223 (405)
Q Consensus 178 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~---------------------------------- 223 (405)
.++..+|+..++++.+.. |.+...+..+..++.+.|-...|.++.
T Consensus 182 ~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~ 260 (822)
T PRK14574 182 TDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSE 260 (822)
T ss_pred cchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccc
Confidence 677767999999999875 445666666666655555443333333
Q ss_pred --------------HHHHhC-CCCCch-hh----HHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcC
Q 035749 224 --------------SEMLSK-GIKPTV-VT----YNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKN 283 (405)
Q Consensus 224 --------------~~~~~~-~~~~~~-~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 283 (405)
+.+... +..|.. .. ....+.++...+++.++++.++.+...+.+....+...+..+|...
T Consensus 261 ~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~ 340 (822)
T PRK14574 261 TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDR 340 (822)
T ss_pred hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhc
Confidence 232221 111221 11 1233456778899999999999999887666667889999999999
Q ss_pred CChHHHHHHHHHHHhcC-----CCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCc-----------Ccc---HHHHH
Q 035749 284 GYIVEALELFRTLRILK-----CELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVL-----------IAD---VVTYN 344 (405)
Q Consensus 284 ~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~ 344 (405)
+++++|+.+++.+.... .+++......|..++...+++++|..+++.+.+..+ .|+ ...+.
T Consensus 341 ~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~ 420 (822)
T PRK14574 341 RLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQT 420 (822)
T ss_pred CCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHH
Confidence 99999999999986643 123444457888999999999999999998876311 122 12344
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhh
Q 035749 345 IMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMD 402 (405)
Q Consensus 345 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 402 (405)
.++..+...|++.+|++.++++... -+-|......+...+...|.+.+|.+.++...
T Consensus 421 l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 421 LLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVE 477 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 5677788999999999999999876 45588888899999999999999999997654
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.88 E-value=1.9e-17 Score=153.65 Aligned_cols=216 Identities=8% Similarity=-0.017 Sum_probs=150.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHH
Q 035749 179 GRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLF 258 (405)
Q Consensus 179 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 258 (405)
++.++|...+.+.... .|+......+...+...|++++|...|+++... +|+...+..+..++.+.|+.++|...+
T Consensus 490 ~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l 565 (987)
T PRK09782 490 TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWL 565 (987)
T ss_pred CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3444555544444443 233332223344445677777777777776553 333344555566677778888888888
Q ss_pred HHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCc
Q 035749 259 DEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIA 338 (405)
Q Consensus 259 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 338 (405)
....+.. +.+...+..+.......|++++|...+++..+.. |+...+..++.++.+.|++++|...+++..... +.
T Consensus 566 ~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd 641 (987)
T PRK09782 566 QQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PN 641 (987)
T ss_pred HHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 7777654 3333334344444555688888888888888764 467788888888889999999999998888763 33
Q ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhh
Q 035749 339 DVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDE 403 (405)
Q Consensus 339 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 403 (405)
+...++.+..++...|++++|+..++++.+. .+-+...+..+..++...|++++|...+++..+
T Consensus 642 ~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 642 NSNYQAALGYALWDSGDIAQSREMLERAHKG-LPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5677888888888899999999999988886 244677788888889999999999998888764
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.86 E-value=5.6e-18 Score=148.39 Aligned_cols=370 Identities=12% Similarity=0.068 Sum_probs=229.1
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHH
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYN 99 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 99 (405)
..|..+.+++...|++++|...|-+..+.++ ......+..+.+.+++.|+++.+...|+.+.+.. |.+..+..
T Consensus 308 es~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~------d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~ 380 (1018)
T KOG2002|consen 308 ESFYQLGRSYHAQGDFEKAFKYYMESLKADN------DNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMK 380 (1018)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccCC------CCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHH
Confidence 4566777777777888888777777776552 1113445666777777777777777777776653 44555555
Q ss_pred HHHHHHHhcC----CHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHH----HcCCCCCHHHHHHH
Q 035749 100 SVIRGFCYAN----DSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMI----QIGVRPNAFVYNTL 171 (405)
Q Consensus 100 ~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l 171 (405)
.|...|...+ ..+.|..++.+..+.- +.|...|..+...+-....+.. +.+|..+. ..+..+.+...|.+
T Consensus 381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNv 458 (1018)
T KOG2002|consen 381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNV 458 (1018)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhH
Confidence 5555555543 3344444444444432 2244455544444443322222 43333322 22333444455555
Q ss_pred HHHHHccCCHHHHHHHHHHH--------------------------------------------HhcCCCCChhhHHHHH
Q 035749 172 MDGFCLTGRVNRAKELFVSM--------------------------------------------ESMGCKHNVFSYSILI 207 (405)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~--------------------------------------------~~~~~~~~~~~~~~l~ 207 (405)
...+...|++.+|...|... .... |.-...|-.++
T Consensus 459 aslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~ 537 (1018)
T KOG2002|consen 459 ASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLG 537 (1018)
T ss_pred HHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhh
Confidence 55555555555555555544 3331 11222233332
Q ss_pred HHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHc-CCCccHHHHHHHHHHHhc----
Q 035749 208 NGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRH-GVAADTWAYRTFIDGLCK---- 282 (405)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~---- 282 (405)
......+...+|...+..+...+ ..++..+..+...+.....+..|.+-|....+. ...+|..+.-.+...|.+
T Consensus 538 ~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~ 616 (1018)
T KOG2002|consen 538 CMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHN 616 (1018)
T ss_pred HHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcc
Confidence 22222344555555555554432 223444445555666666666666655554432 123455555555554432
Q ss_pred --------CCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCC
Q 035749 283 --------NGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADG 354 (405)
Q Consensus 283 --------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 354 (405)
.+..++|+++|.+++... |.+...-+.++.+++..|++.+|..+|.++.+... ....+|..+.++|+.+|
T Consensus 617 ~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~ 694 (1018)
T KOG2002|consen 617 PSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQG 694 (1018)
T ss_pred cccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHH
Confidence 245778999999988876 77888889999999999999999999999987633 35678999999999999
Q ss_pred CHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCchhHHHHHHHHhh
Q 035749 355 KMDKAHDLFLDMEAK-GVAPDCVAFNTLMLGCIRNNETSKVVELLHRMD 402 (405)
Q Consensus 355 ~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 402 (405)
+|..|+++|+...+. ....+..+...|.+++.+.|.+.+|.+.+....
T Consensus 695 qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 695 QYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 999999999988765 344577888999999999999999998877654
No 25
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.86 E-value=5e-17 Score=141.50 Aligned_cols=372 Identities=15% Similarity=0.102 Sum_probs=288.1
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHH
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNS 100 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (405)
..-.....+...|++++|..++.++++.. |.+...|..|..+|-..|+.+++...+-.+-..+ |-|...|..
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqd-------p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ 212 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQD-------PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKR 212 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHH
Confidence 33444555666799999999999999986 6778899999999999999999998876665553 557899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHH
Q 035749 101 VIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVY----NTLMDGFC 176 (405)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~ 176 (405)
+.....+.|+++.|.-.|.+.++..+ ++...+..-+..|-+.|+...|...|.++.+...+.|..-+ ...+..+.
T Consensus 213 ladls~~~~~i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 213 LADLSEQLGNINQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999854 46777777788999999999999999999987533333222 33456677
Q ss_pred ccCCHHHHHHHHHHHHhcC-CCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhC--------------------------
Q 035749 177 LTGRVNRAKELFVSMESMG-CKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK-------------------------- 229 (405)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------------------------- 229 (405)
..++-+.|.+.++.....+ -..+...++.++..+.+...++.+..........
T Consensus 292 ~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~ 371 (895)
T KOG2076|consen 292 THNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVG 371 (895)
T ss_pred HhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCC
Confidence 7788899999988877632 2345667889999999999999998888777651
Q ss_pred -CCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcC--CCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHH
Q 035749 230 -GIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHG--VAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIR 306 (405)
Q Consensus 230 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 306 (405)
+..++... ..++.++.+.+..+....+.......+ +..+...+.-+..++...|.+.+|+.++..+......-+..
T Consensus 372 ~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~ 450 (895)
T KOG2076|consen 372 KELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAF 450 (895)
T ss_pred CCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchh
Confidence 11222222 233445556666556666666666655 33456788899999999999999999999998876556678
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHh--------CCCCCCHHHH
Q 035749 307 SYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEA--------KGVAPDCVAF 378 (405)
Q Consensus 307 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~ 378 (405)
+|..++++|...|.++.|.+.|+.+.... +.+..+-..|...+.+.|+.++|.+.+..+.. .+..|+....
T Consensus 451 vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~ 529 (895)
T KOG2076|consen 451 VWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRIL 529 (895)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHH
Confidence 99999999999999999999999998752 23566677788889999999999999998542 2355666676
Q ss_pred HHHHHHHHccCchhHHHHHHHHhhh
Q 035749 379 NTLMLGCIRNNETSKVVELLHRMDE 403 (405)
Q Consensus 379 ~~l~~~~~~~g~~~~a~~~~~~~~~ 403 (405)
......+.+.|+.++-......|+.
T Consensus 530 ~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 530 AHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 7777888899999887776666653
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.85 E-value=1.2e-16 Score=148.32 Aligned_cols=352 Identities=11% Similarity=-0.012 Sum_probs=248.0
Q ss_pred hcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-C-CCCChHHHHHHHHHHHhc
Q 035749 31 RTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK-N-INPDVVTYNSVIRGFCYA 108 (405)
Q Consensus 31 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~ 108 (405)
..+...++...+..+.+.. +.+......+.-..++.|+.++|.++|+..... + ...+......++..|.+.
T Consensus 354 ~~~~~~~~~~~~~~~y~~~-------~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 426 (987)
T PRK09782 354 ATRNKAEALRLARLLYQQE-------PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESH 426 (987)
T ss_pred ccCchhHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhC
Confidence 4466667777777776653 446666777777777788888888888877652 1 122334444666666655
Q ss_pred CC---HHHHHH----------------------HHHHHHHC-C-CCc--cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 109 ND---SNEAKR----------------------LFIEMMDQ-G-VQP--NVVTFSVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 109 ~~---~~~a~~----------------------~~~~~~~~-~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
+. ..++.. .++..... + .++ +...|..+..++.. ++.++|...+.+....
T Consensus 427 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~ 505 (987)
T PRK09782 427 PYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR 505 (987)
T ss_pred CcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh
Confidence 44 222222 22222221 1 123 56677777777766 7888899988877766
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHH
Q 035749 160 GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYN 239 (405)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (405)
.|+......+...+...|++++|...++++... +|+...+..+...+.+.|+.++|...+++..... +++...+.
T Consensus 506 --~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~ 580 (987)
T PRK09782 506 --QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYW 580 (987)
T ss_pred --CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHH
Confidence 355444444555667889999999999987655 4455556677788888999999999999988764 22333333
Q ss_pred HHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC
Q 035749 240 TLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSG 319 (405)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 319 (405)
.+.......|++++|...+++..+.. |+...+..+..++.+.|++++|...++++.... |.+...+..+..++...|
T Consensus 581 ~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G 657 (987)
T PRK09782 581 WLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSG 657 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 33344445699999999999988764 567788888889999999999999999998876 667788888888999999
Q ss_pred CHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCchhHHHHHH
Q 035749 320 RLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPD-CVAFNTLMLGCIRNNETSKVVELL 398 (405)
Q Consensus 320 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~ 398 (405)
++++|+..+++..+.. +-+...+..+..++...|++++|+..+++..+. .|+ ..+.........+..+++.|.+-+
T Consensus 658 ~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~ 734 (987)
T PRK09782 658 DIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEV 734 (987)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999887753 236778888999999999999999999999875 343 345555566677777777777766
Q ss_pred HHh
Q 035749 399 HRM 401 (405)
Q Consensus 399 ~~~ 401 (405)
++.
T Consensus 735 ~r~ 737 (987)
T PRK09782 735 GRR 737 (987)
T ss_pred HHH
Confidence 654
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.85 E-value=3.8e-18 Score=137.64 Aligned_cols=391 Identities=15% Similarity=0.110 Sum_probs=225.0
Q ss_pred hHhHHHHHHhhcCCCCChhHHH-HHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHH
Q 035749 2 EAAALFTKLKAFGCEPNVITYS-TLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAK 80 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (405)
||+..++-+++....|+...+. .+...+.+..++.+|+++|+.++..-+... ......+.+.+...+.+.|+++.|+
T Consensus 219 ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsin--k~~rikil~nigvtfiq~gqy~dai 296 (840)
T KOG2003|consen 219 EALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSIN--KDMRIKILNNIGVTFIQAGQYDDAI 296 (840)
T ss_pred HHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccc--hhhHHHHHhhcCeeEEecccchhhH
Confidence 5667777777766666665433 456778888889999999988887642211 0112446677777788889999999
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc------------cHhhHHHHHH-----HHHcC
Q 035749 81 ELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQP------------NVVTFSVIMD-----ELCKN 143 (405)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------~~~~~~~l~~-----~~~~~ 143 (405)
..|+...+. .|+..+-..|+-++.--|+.++..+.|.+|+.....| +....+..+. -.-+.
T Consensus 297 nsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~ 374 (840)
T KOG2003|consen 297 NSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKE 374 (840)
T ss_pred hhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHh
Confidence 999988776 4676666666667777888888888888887642222 2222221111 11111
Q ss_pred C--CHHHHHHHHHHHHHcCCCCCHH-------------HH--------HHHHHHHHccCCHHHHHHHHHHHHhcCCCCCh
Q 035749 144 G--KMEEASQLLELMIQIGVRPNAF-------------VY--------NTLMDGFCLTGRVNRAKELFVSMESMGCKHNV 200 (405)
Q Consensus 144 ~--~~~~a~~~~~~~~~~~~~~~~~-------------~~--------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 200 (405)
. +.++++-.--+++.--+.|+-. .+ ..-.--+.+.|+++.|+++++-+.+...+.-.
T Consensus 375 ~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~s 454 (840)
T KOG2003|consen 375 NKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTAS 454 (840)
T ss_pred hhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhH
Confidence 1 1122221111111111111100 00 01123466777777777777665543211111
Q ss_pred hhHHHH------------------------------------HHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHH
Q 035749 201 FSYSIL------------------------------------INGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIG 244 (405)
Q Consensus 201 ~~~~~l------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (405)
..-+.| .+.....|++++|.+.|++.+..+..-.. ....+...
T Consensus 455 aaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e-alfniglt 533 (840)
T KOG2003|consen 455 AAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE-ALFNIGLT 533 (840)
T ss_pred HHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH-HHHHhccc
Confidence 111110 11112346777777777777665322111 22223334
Q ss_pred HHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHH
Q 035749 245 LFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIA 324 (405)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 324 (405)
+-..|+.++|++.|-++... +..+..++..+...|....+..+|++++.+.... +|.|+.++..+...|-+.|+-..|
T Consensus 534 ~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqa 611 (840)
T KOG2003|consen 534 AEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQA 611 (840)
T ss_pred HHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhh
Confidence 55667777777777665543 1335566666666777777777777777666544 356667777777777777777777
Q ss_pred HHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HccCchhHHHHHHHHhh
Q 035749 325 WELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGC-IRNNETSKVVELLHRMD 402 (405)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~ 402 (405)
.+..-+--+. ++-+..+...|...|....-+++|+.+|+++.- +.|+..-|..++..| .+.|++++|.++++...
T Consensus 612 fq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~h 687 (840)
T KOG2003|consen 612 FQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIH 687 (840)
T ss_pred hhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 6665444333 344666666677667777777777777776654 467777776666443 45677777777776654
No 28
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=8e-16 Score=124.85 Aligned_cols=386 Identities=12% Similarity=0.088 Sum_probs=292.0
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHH
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKE 81 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 81 (405)
+|..+|++.+..+ ..+...|...+..-.++.....|..++++++..- |.-...|...+..--..|+...|.+
T Consensus 91 RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-------PRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 91 RARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-------PRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-------chHHHHHHHHHHHHHHhcccHHHHH
Confidence 5889999999876 4567789999999999999999999999998763 3444567777777777899999999
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc-C
Q 035749 82 LLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI-G 160 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~ 160 (405)
+|++..+- .|+..+|.+.|..-.+.+.++.|..+|+...-. .|+..+|...++.-.+.|....+..+|+.+.+. |
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 99998875 789999999999999999999999999998764 588899988888888899999998888887654 1
Q ss_pred -CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-------------------------------------------CC
Q 035749 161 -VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESM-------------------------------------------GC 196 (405)
Q Consensus 161 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------------------------------------------~~ 196 (405)
-..+...+.++...-.++..++.|.-+|+-..+. ..
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 0112334445544444555555555555433321 11
Q ss_pred CCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchh--hHHH---H-----HHHHHccccHHHHHHHHHHHHHcCC
Q 035749 197 KHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVV--TYNT---L-----FIGLFEIHQVERAFKLFDEMQRHGV 266 (405)
Q Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~---l-----~~~~~~~~~~~~a~~~~~~~~~~~~ 266 (405)
+.|-.+|-..++.-...|+.+...++|++++.. ++|-.. .|.. | +-.-....+.+.+.++++..++. +
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-I 396 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-I 396 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-c
Confidence 445566677777777889999999999998875 455221 1111 1 11123567888999999988874 4
Q ss_pred CccHHHHHHHHHHH----hcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHH
Q 035749 267 AADTWAYRTFIDGL----CKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVT 342 (405)
Q Consensus 267 ~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 342 (405)
|....++..+--.| .++.++..|.+++..+.. .-|-..++...|..-.+.+++|.+..++++.++.++ -+..+
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P-e~c~~ 473 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP-ENCYA 473 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh-HhhHH
Confidence 55555655544443 467889999999998874 468888999999999999999999999999998743 37788
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhc
Q 035749 343 YNIMIHALCADGKMDKAHDLFLDMEAKG-VAPDCVAFNTLMLGCIRNNETSKVVELLHRMDER 404 (405)
Q Consensus 343 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 404 (405)
|......-...|+.+.|..+|.-+++.. +......|...|..-...|.++.|+.+++++.++
T Consensus 474 W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 474 WSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 8888888889999999999999998762 2223456777777778899999999999999875
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.84 E-value=1.1e-15 Score=122.66 Aligned_cols=397 Identities=16% Similarity=0.202 Sum_probs=283.7
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHHHHHHHh--cCchH-HHHHHHHHHHcCCCCCccc-------------ccccHHHHHH
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTLINGLCR--TGHTI-VALNLFEEMINGNGEFGVV-------------CKPDAVIYTT 65 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~-~A~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~ 65 (405)
++.-+++.|.+.|++.+...-..|.+.-+- +.+.. .-.+.|-.+...+.+.+.. .|.+..++..
T Consensus 133 Ds~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT~et~s~ 212 (625)
T KOG4422|consen 133 DSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKTDETVSI 212 (625)
T ss_pred hhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCCchhHHH
Confidence 456789999999988888777766654332 22222 1233344444333222211 3556789999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCC
Q 035749 66 IIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGK 145 (405)
Q Consensus 66 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 145 (405)
+|.++++--+.++|.+++++......+.+..+||.+|.+-.-..+ .++..+|....+.||..|+|.++.+..+.|+
T Consensus 213 mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~ 288 (625)
T KOG4422|consen 213 MIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSCAAKFGK 288 (625)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHHHHHhcc
Confidence 999999999999999999999888778999999999876544332 7889999999999999999999999999998
Q ss_pred HHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHh----cCC----CCChhhHHHHHHHHhh
Q 035749 146 MEE----ASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNR-AKELFVSMES----MGC----KHNVFSYSILINGYCK 212 (405)
Q Consensus 146 ~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~----~~~~~~~~~l~~~~~~ 212 (405)
++. |.+++.+|++.|+.|...+|..++..+.+.++..+ +..++..+.. ... +.+...|...+..|.+
T Consensus 289 F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~ 368 (625)
T KOG4422|consen 289 FEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSS 368 (625)
T ss_pred hHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHH
Confidence 765 56788889999999999999999999998888644 4445544432 222 2244556677788888
Q ss_pred cCChHHHHHHHHHHHhCC----CCCch---hhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCC
Q 035749 213 NKEIEGALSLYSEMLSKG----IKPTV---VTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGY 285 (405)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 285 (405)
..+.+-|.++..-+.... +.|+. .-|..+....+.....+.....|+.|...-.-|+..+...++++....|.
T Consensus 369 l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~ 448 (625)
T KOG4422|consen 369 LRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANR 448 (625)
T ss_pred hhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCc
Confidence 888888888776655431 23332 23556677778888899999999999988778899999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC-CH--------H-----HHHHHHh-------hccCCCcCccHHHHH
Q 035749 286 IVEALELFRTLRILKCELDIRSYSCLIDGLCKSG-RL--------K-----IAWELFH-------SLPRGVLIADVVTYN 344 (405)
Q Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~--------~-----~a~~~~~-------~~~~~~~~~~~~~~~ 344 (405)
++-..++|..+...|..........+...+++.. ++ . -|..+++ ++.+. .......+
T Consensus 449 ~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~ 526 (625)
T KOG4422|consen 449 LEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLN 526 (625)
T ss_pred chhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHH
Confidence 9999999988887775544444444444444433 11 1 1112221 12222 23455667
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhc
Q 035749 345 IMIHALCADGKMDKAHDLFLDMEAKG----VAPDCVAFNTLMLGCIRNNETSKVVELLHRMDER 404 (405)
Q Consensus 345 ~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 404 (405)
..+..+.+.|+.++|.+++.-+.+.+ ..|.......++..-.+.+...+|..+++-|...
T Consensus 527 ~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 527 CIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred HHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 77777889999999999999886543 2234444556777778889999999998877653
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.84 E-value=4.3e-16 Score=124.84 Aligned_cols=373 Identities=16% Similarity=0.202 Sum_probs=275.6
Q ss_pred CCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 035749 16 EPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDV 95 (405)
Q Consensus 16 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 95 (405)
|.+..++..+|.++++-...+.|.+++++..+.. .+.+..+||.+|.+-.-. ...+++.+|......||.
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k------~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAK------GKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNL 273 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh------heeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCch
Confidence 5677899999999999999999999999998876 578899999999875533 337899999999999999
Q ss_pred HHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHH-HHHHHHHHHHc----CC----C
Q 035749 96 VTYNSVIRGFCYANDSNE----AKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEE-ASQLLELMIQI----GV----R 162 (405)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~----~ 162 (405)
.|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..++..+.+.++..+ +..++..+... .+ +
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 999999999999998865 55778889999999999999999999988887644 55555555432 12 2
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC----CCCC---hhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCch
Q 035749 163 PNAFVYNTLMDGFCLTGRVNRAKELFVSMESMG----CKHN---VFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTV 235 (405)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 235 (405)
.|...|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+..+.++....+.-...|+.|.-.-+-|+.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~ 433 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHS 433 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCc
Confidence 345566778888989999999988877665421 1222 234566777788888999999999999988788899
Q ss_pred hhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCC-Ch--------HH-----HHHHH-------H
Q 035749 236 VTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNG-YI--------VE-----ALELF-------R 294 (405)
Q Consensus 236 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~--------~~-----a~~~~-------~ 294 (405)
.+...++++....+.++-.-+++.+++..|..........++..+++.. +. .. |..++ .
T Consensus 434 ~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~ 513 (625)
T KOG4422|consen 434 QTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPI 513 (625)
T ss_pred hhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999999999999988876555555555555555543 11 11 11111 1
Q ss_pred HHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCC-CcCccHHHHH---HHHHHHHcCCCHHHHHHHHHHHHhCC
Q 035749 295 TLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRG-VLIADVVTYN---IMIHALCADGKMDKAHDLFLDMEAKG 370 (405)
Q Consensus 295 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~ 370 (405)
++.+ ........+..+-.+.+.|+.++|.++|.-+.++ +-.|-....| -++..-...+++..|..+++-|...+
T Consensus 514 R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 514 RQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 1222 2455667788888899999999999999887443 2333334444 55566678889999999999998765
Q ss_pred CCCCHHHHHHHHHHHHccCchhHHHHHHHH
Q 035749 371 VAPDCVAFNTLMLGCIRNNETSKVVELLHR 400 (405)
Q Consensus 371 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 400 (405)
.+.-...-..+...|.-+..-.+++.-+..
T Consensus 592 ~~~~E~La~RI~e~f~iNqeq~~~ls~l~~ 621 (625)
T KOG4422|consen 592 LPICEGLAQRIMEDFAINQEQKEALSNLTA 621 (625)
T ss_pred chhhhHHHHHHHHhcCcCHHHHHHHhhhhh
Confidence 443332445555666555555555554443
No 31
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.82 E-value=3.7e-15 Score=131.09 Aligned_cols=389 Identities=14% Similarity=0.081 Sum_probs=269.9
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHH
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAK 80 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (405)
+.|.+.|...++.. ++|.-.+.--.......+++..|+.+|..++...+. .+|+ ....+..++.+.|+.+.|+
T Consensus 147 ~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~----~~aD--~rIgig~Cf~kl~~~~~a~ 219 (1018)
T KOG2002|consen 147 DDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPA----CKAD--VRIGIGHCFWKLGMSEKAL 219 (1018)
T ss_pred HHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcc----cCCC--ccchhhhHHHhccchhhHH
Confidence 36778888888775 566655555566667889999999999998877643 2333 3445557788899999999
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 035749 81 ELLLQMKDKNINPDVVTYNSVIRGFCYAN---DSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMI 157 (405)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 157 (405)
..|.+..+.+ |.++.++..|...-.... .+..+...+...-.... -++...+.|...+.-.|+++.+..+...+.
T Consensus 220 ~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~-~nP~~l~~LAn~fyfK~dy~~v~~la~~ai 297 (1018)
T KOG2002|consen 220 LAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN-ENPVALNHLANHFYFKKDYERVWHLAEHAI 297 (1018)
T ss_pred HHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC-CCcHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 9999998874 334555544444333333 34566666666655533 377888888999999999999999988887
Q ss_pred HcCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCch
Q 035749 158 QIGV--RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTV 235 (405)
Q Consensus 158 ~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 235 (405)
.... ..-...|..+.++|...|++++|..+|.+..+.........+..+.+.+.+.|+.+.+...|+.+.... +.+.
T Consensus 298 ~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~ 376 (1018)
T KOG2002|consen 298 KNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNY 376 (1018)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchH
Confidence 6531 122345788899999999999999999888776422224456678889999999999999999988762 4456
Q ss_pred hhHHHHHHHHHccc----cHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHH----hcCCCccHHH
Q 035749 236 VTYNTLFIGLFEIH----QVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLR----ILKCELDIRS 307 (405)
Q Consensus 236 ~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~ 307 (405)
.+...+...|...+ ..++|..++.+..+.. +.|...|-.+...+....- ..++.+|..+. ..+.++.+..
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~ 454 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEV 454 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 67777777777664 5677788888777764 6677777777777765444 34477766653 3444677888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhccCC---CcCc------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHH
Q 035749 308 YSCLIDGLCKSGRLKIAWELFHSLPRG---VLIA------DVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPD-CVA 377 (405)
Q Consensus 308 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~ 377 (405)
.|.++..+...|++.+|...|...... ...+ +..+--.+..++-..++++.|.+.|+...+. .|. ...
T Consensus 455 LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ 532 (1018)
T KOG2002|consen 455 LNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDA 532 (1018)
T ss_pred HHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHH
Confidence 899999899999999998888876543 1112 2223334566666778888888888888875 333 233
Q ss_pred HHHHHHHHHccCchhHHHHHHHHhhh
Q 035749 378 FNTLMLGCIRNNETSKVVELLHRMDE 403 (405)
Q Consensus 378 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 403 (405)
|..++......++..+|..+++...+
T Consensus 533 ylRl~~ma~~k~~~~ea~~~lk~~l~ 558 (1018)
T KOG2002|consen 533 YLRLGCMARDKNNLYEASLLLKDALN 558 (1018)
T ss_pred HHHhhHHHHhccCcHHHHHHHHHHHh
Confidence 44444333345677777777776653
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=3.7e-16 Score=126.33 Aligned_cols=372 Identities=15% Similarity=0.119 Sum_probs=248.3
Q ss_pred hHhHHHHHHhhcCCCCCh------hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCC
Q 035749 2 EAAALFTKLKAFGCEPNV------ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGF 75 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 75 (405)
.|+++++-.+.. -|+. ...+.+...+.+.|+++.|+..|+...+.. |+..+-..|+-++..-|+
T Consensus 255 kaikfyrmaldq--vpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~--------pn~~a~~nl~i~~f~i~d 324 (840)
T KOG2003|consen 255 KAIKFYRMALDQ--VPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA--------PNFIAALNLIICAFAIGD 324 (840)
T ss_pred HHHHHHHHHHhh--ccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC--------ccHHhhhhhhhhheecCc
Confidence 466666655544 2322 234555566778899999999999988754 666655556666667788
Q ss_pred hHHHHHHHHHHHhCCCCCChHH--------HHHHHHHHHhc---------C--CHHHHHHHHHHHHHCCCCccH------
Q 035749 76 VDKAKELLLQMKDKNINPDVVT--------YNSVIRGFCYA---------N--DSNEAKRLFIEMMDQGVQPNV------ 130 (405)
Q Consensus 76 ~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~---------~--~~~~a~~~~~~~~~~~~~~~~------ 130 (405)
-++..+.|.+|+.....||..- ...|+.-..+. + +.++++-.-.+++.--+.|+-
T Consensus 325 ~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dw 404 (840)
T KOG2003|consen 325 AEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDW 404 (840)
T ss_pred HHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHH
Confidence 8888888988876532222111 11122111111 1 111111111111111111110
Q ss_pred ---------------hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC--------------------------------
Q 035749 131 ---------------VTFSVIMDELCKNGKMEEASQLLELMIQIGVRP-------------------------------- 163 (405)
Q Consensus 131 ---------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------------------------- 163 (405)
..-..-...+.+.|+++.|++++.-+.+..-+.
T Consensus 405 cle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln 484 (840)
T KOG2003|consen 405 CLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALN 484 (840)
T ss_pred HHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhc
Confidence 000112335667777777777776654432111
Q ss_pred ----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHH
Q 035749 164 ----NAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYN 239 (405)
Q Consensus 164 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (405)
+......-.+.....|++++|...|++.......-....|+ +.-.+-..|+.++|++.|-++... ...+.....
T Consensus 485 ~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~ 562 (840)
T KOG2003|consen 485 IDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLV 562 (840)
T ss_pred ccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHH
Confidence 11111111222345688999999999988654222222333 334567789999999999887653 234667778
Q ss_pred HHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC
Q 035749 240 TLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSG 319 (405)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 319 (405)
.+...|....++..|++++.+.... ++.|+..+..+...|-+.|+-.+|.+.+-..... +|.+..+...+...|....
T Consensus 563 qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtq 640 (840)
T KOG2003|consen 563 QIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQ 640 (840)
T ss_pred HHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhH
Confidence 8889999999999999999888765 5788999999999999999999998887655433 4788999999999999999
Q ss_pred CHHHHHHHHhhccCCCcCccHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCc
Q 035749 320 RLKIAWELFHSLPRGVLIADVVTYNIMIHALC-ADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNE 390 (405)
Q Consensus 320 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 390 (405)
-+++++.+|++..- +.|+..-|..++..|. +.|+++.|.++++....+ ++.|...+..|++.+...|-
T Consensus 641 f~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 641 FSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 99999999998765 5789999998886655 789999999999999876 77788888888888877663
No 33
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=1.4e-14 Score=117.84 Aligned_cols=381 Identities=11% Similarity=0.094 Sum_probs=260.9
Q ss_pred HhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHH
Q 035749 3 AAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKEL 82 (405)
Q Consensus 3 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 82 (405)
|.++|++..+. .|+..+|.+.|..-.+.+.++.|..++++..- +.|+...|......-.+.|+...+..+
T Consensus 160 aRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--------~HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 160 ARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--------VHPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred HHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--------ecccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 56666666654 56667777777776677777777777776654 346666666666666667777777777
Q ss_pred HHHHHhC-C-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc--HhhHHHHHHHHHcCCCHHHHHHH------
Q 035749 83 LLQMKDK-N-INPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPN--VVTFSVIMDELCKNGKMEEASQL------ 152 (405)
Q Consensus 83 ~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~------ 152 (405)
|+...+. | -..+...+.+....-.++..++.|.-+|.-.++. ++.+ ...|..+...--+-|+.......
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 6666543 1 0011223333333333455666666666666654 2212 23343333333344554333322
Q ss_pred --HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChh--hHHHHH--------HHHhhcCChHHHH
Q 035749 153 --LELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVF--SYSILI--------NGYCKNKEIEGAL 220 (405)
Q Consensus 153 --~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~--------~~~~~~~~~~~a~ 220 (405)
++..++.+ +.|-.+|...++.-...|+.+...++|++++..- ||-.. .|...| ..-....+.+.+.
T Consensus 309 ~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 309 FQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34444444 6677888888888889999999999999998863 44221 122221 1123468999999
Q ss_pred HHHHHHHhCCCCCchhhHHHHHHHHH----ccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 035749 221 SLYSEMLSKGIKPTVVTYNTLFIGLF----EIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTL 296 (405)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 296 (405)
++|+..++. ++....||..+.-.|+ ++.+...|.+++...+. ..|...++...+..-.+.++++.+..++++.
T Consensus 387 ~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 387 QVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999884 5666778877766654 66789999999988774 5789999999999999999999999999999
Q ss_pred HhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCC-cCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH
Q 035749 297 RILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGV-LIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDC 375 (405)
Q Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 375 (405)
++.+ |-+..+|...+..-...|+.+.|..+|+-+++.. .......|...|..-...|.++.|..+++++++. .+..
T Consensus 464 le~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~ 540 (677)
T KOG1915|consen 464 LEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHV 540 (677)
T ss_pred HhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccc
Confidence 9887 6788899999988899999999999999887642 2223455667777777899999999999999986 4455
Q ss_pred HHHHHHHHHHH-----ccC-----------chhHHHHHHHHhh
Q 035749 376 VAFNTLMLGCI-----RNN-----------ETSKVVELLHRMD 402 (405)
Q Consensus 376 ~~~~~l~~~~~-----~~g-----------~~~~a~~~~~~~~ 402 (405)
.+|.++...-. +.| +...|+.+|++..
T Consensus 541 kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 541 KVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred hHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 56766665433 344 5667777777653
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.81 E-value=2.9e-15 Score=130.78 Aligned_cols=355 Identities=15% Similarity=0.107 Sum_probs=268.1
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHH
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAK 80 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (405)
++|..++.++.+.. +.+...|..|...|-+.|+.+++...+-.+-..+ |.+...|..+.....+.|.+++|.
T Consensus 156 eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-------p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 156 EEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-------PKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-------CCChHHHHHHHHHHHhcccHHHHH
Confidence 47999999999886 6778899999999999999999999988887775 567799999999999999999999
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHH----HHHHHHHcCCCHHHHHHHHHHH
Q 035749 81 ELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFS----VIMDELCKNGKMEEASQLLELM 156 (405)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~ 156 (405)
-.|.+.++.. |++...+-.-+..|-+.|+...|...|.++....++.+..-+. ..+..+...++-+.|.+.++..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999885 6676666777888999999999999999999875533333333 3455677778779999998887
Q ss_pred HHc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC---------------------------CCCChhhHHHHHH
Q 035749 157 IQI-GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMG---------------------------CKHNVFSYSILIN 208 (405)
Q Consensus 157 ~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~l~~ 208 (405)
... +-..+...++.++..+.+...++.+........... ..++..++ .+.-
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~i 385 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMI 385 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhh
Confidence 763 224456677888888999999999988887766511 11122221 1222
Q ss_pred HHhhcCChHHHHHHHHHHHhCC--CCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCCh
Q 035749 209 GYCKNKEIEGALSLYSEMLSKG--IKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYI 286 (405)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 286 (405)
++...+..+....+........ +.-+...|..+..++...|.+.+|+.+|..+.......+...|..+..+|...|..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 3334444444444444444544 33355678889999999999999999999998775445567899999999999999
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccC--------CCcCccHHHHHHHHHHHHcCCCHHH
Q 035749 287 VEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPR--------GVLIADVVTYNIMIHALCADGKMDK 358 (405)
Q Consensus 287 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~ 358 (405)
++|.+.|+.++... |.+..+-..|...+...|+.++|.+.+..+.. ....|+....-.....+...|+.++
T Consensus 466 e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 466 EEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999998875 66777788888999999999999999988652 2233444444445556667777666
Q ss_pred HHHHHHHH
Q 035749 359 AHDLFLDM 366 (405)
Q Consensus 359 A~~~~~~~ 366 (405)
=+.+...|
T Consensus 545 fi~t~~~L 552 (895)
T KOG2076|consen 545 FINTASTL 552 (895)
T ss_pred HHHHHHHH
Confidence 54444433
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.81 E-value=6e-19 Score=144.36 Aligned_cols=262 Identities=16% Similarity=0.157 Sum_probs=100.6
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHH
Q 035749 24 TLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIR 103 (405)
Q Consensus 24 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 103 (405)
.+...+.+.|++++|++++++...... .+.++..|..+.......++++.|.+.++++...+ +-++..+..++.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~-----~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~ 86 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIA-----PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQ 86 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc-----ccccccccccccccccccccccccccccccccccc-cccccccccccc
Confidence 557778888888888888865443320 13455566666667777888888888888887764 335666777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHH
Q 035749 104 GFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIG-VRPNAFVYNTLMDGFCLTGRVN 182 (405)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~ 182 (405)
. ...+++++|.++++...+. .++...+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.+
T Consensus 87 l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~ 163 (280)
T PF13429_consen 87 L-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPD 163 (280)
T ss_dssp ----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHH
T ss_pred c-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 6 6788888888888776554 2455666777777888888888888888876532 3456677777888888888888
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHH
Q 035749 183 RAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQ 262 (405)
Q Consensus 183 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 262 (405)
+|.+.+++..+.. |.+......++..+...|+.+++..++....... +.++..+..+..++...|++++|...+++..
T Consensus 164 ~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 164 KALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccc
Confidence 8888888888774 4457777788888888888888777777776653 3455566777788888888888888888877
Q ss_pred HcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 035749 263 RHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLR 297 (405)
Q Consensus 263 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 297 (405)
+.. +.|+.....+..++...|+.++|.++.+++.
T Consensus 242 ~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 242 KLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHS-TT-HHHHHHHHHHHT----------------
T ss_pred ccc-ccccccccccccccccccccccccccccccc
Confidence 764 5677778888888888888888888777654
No 36
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.81 E-value=5.7e-16 Score=132.49 Aligned_cols=282 Identities=12% Similarity=0.071 Sum_probs=180.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHccCCHHHHH
Q 035749 108 ANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYN--TLMDGFCLTGRVNRAK 185 (405)
Q Consensus 108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~ 185 (405)
.|+++.|.+.+....+....| ...+.....+....|+++.|...+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 577777777666654432111 222333344446777788888877777664 34433222 3356677777888888
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchh-------hHHHHHHHHHccccHHHHHHHH
Q 035749 186 ELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVV-------TYNTLFIGLFEIHQVERAFKLF 258 (405)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~ 258 (405)
..++.+.+.. |.++.....+...|.+.|++++|.+++..+.+.+..++.. +|..++.......+.+....++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8887777765 5566777777777777788888887777777765432221 1222222223334445555555
Q ss_pred HHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCc
Q 035749 259 DEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIA 338 (405)
Q Consensus 259 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 338 (405)
+.+.+. .+.++.....+...+...|+.++|..++++..+. +++.... ++.+....++++++.+..+...+.. +-
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CC
Confidence 555433 2456667777777788888888888888777763 4454322 2233334577788887777776652 23
Q ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHh
Q 035749 339 DVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRM 401 (405)
Q Consensus 339 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 401 (405)
|...+..+...+.+.|++++|.+.|+.+.+. .|+...+..+..++.+.|+.++|.+++++-
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5566777777888888888888888887774 677777777778888888888888777765
No 37
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.80 E-value=1.1e-15 Score=131.43 Aligned_cols=119 Identities=13% Similarity=0.164 Sum_probs=49.7
Q ss_pred cCChHHHHHHHHHHHhCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHH
Q 035749 73 EGFVDKAKELLLQMKDKNINPD-VVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQ 151 (405)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 151 (405)
.|+++.|.+.+.+..+.. |+ ...+-....+..+.|+.+.|.+.+.+..+....+...........+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 344555555444443331 22 222223334444445555555554444433211111122222444444445555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 035749 152 LLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESM 194 (405)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (405)
.++.+.+.. |.+..+...+...+...|++++|.+.+..+.+.
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 544444443 333344444444444455555555444444444
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.80 E-value=2.7e-19 Score=146.39 Aligned_cols=261 Identities=15% Similarity=0.098 Sum_probs=81.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhc
Q 035749 135 VIMDELCKNGKMEEASQLLELMIQIG-VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKN 213 (405)
Q Consensus 135 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (405)
.+...+.+.|++++|.++++...... .+.+...|..+...+...++++.|...++++...+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 34555666666666666664433332 13334444455555556666666666666666554 2344455555555 566
Q ss_pred CChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcC-CCccHHHHHHHHHHHhcCCChHHHHHH
Q 035749 214 KEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHG-VAADTWAYRTFIDGLCKNGYIVEALEL 292 (405)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 292 (405)
+++++|.+++....+. .++...+...+..+...++++++..++..+.... .+.+...+......+.+.|+.++|+..
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666655443 2344445555566666666666666666655321 234555566666666666777777777
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 035749 293 FRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVA 372 (405)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 372 (405)
++++.+.. |.+......++..+...|+.+++.++++...+.. +.|+..+..+..++...|++++|...+++..+. .+
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NP 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-ST
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc-cc
Confidence 76666654 3455666666666666666666666665554432 234455666666667777777777777776664 23
Q ss_pred CCHHHHHHHHHHHHccCchhHHHHHHHHhh
Q 035749 373 PDCVAFNTLMLGCIRNNETSKVVELLHRMD 402 (405)
Q Consensus 373 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 402 (405)
.|+.....+..++...|+.++|.++.+++.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 366666666677777777777776666554
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.80 E-value=2.3e-15 Score=128.80 Aligned_cols=285 Identities=14% Similarity=0.059 Sum_probs=222.7
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhH--HHHHHHHHcCCCHHH
Q 035749 72 KEGFVDKAKELLLQMKDKNINPDVVT-YNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTF--SVIMDELCKNGKMEE 148 (405)
Q Consensus 72 ~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~ 148 (405)
..|+++.|.+.+....+.. +++.. |........+.|+++.|.+.+.++.+. .|+.... ......+...|+++.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 3699999998888776642 23333 334455558999999999999999875 3443322 244678889999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCh-------hhHHHHHHHHhhcCChHHHHH
Q 035749 149 ASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNV-------FSYSILINGYCKNKEIEGALS 221 (405)
Q Consensus 149 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~ 221 (405)
|...++.+.+.. |.+......+...|.+.|++++|..++..+.+....++. .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999886 667888899999999999999999999999987643222 123333444444455666667
Q ss_pred HHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCC
Q 035749 222 LYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKC 301 (405)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 301 (405)
+++.+... .+.++.....+...+...|+.++|...+.+..+. ++++.... +.+....++.+++.+..+...+..
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~--l~~~l~~~~~~~al~~~e~~lk~~- 324 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVL--LIPRLKTNNPEQLEKVLRQQIKQH- 324 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHH--HHhhccCCChHHHHHHHHHHHhhC-
Confidence 77665443 3456778888899999999999999999999884 56664332 333445699999999999998875
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 302 ELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 302 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
|.|+..+..+++.+...+++++|.+.|+.+.+. .|+...+..+..++.+.|+.++|.+++++....
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 677888999999999999999999999999884 688899999999999999999999999988653
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.80 E-value=2e-15 Score=129.92 Aligned_cols=288 Identities=13% Similarity=0.097 Sum_probs=170.7
Q ss_pred HHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh--HHHHHHHHHHH
Q 035749 29 LCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDV--VTYNSVIRGFC 106 (405)
Q Consensus 29 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~ 106 (405)
....|+++.|.+.+.+..+.. +.....+........+.|+++.|.+.+.+..+.. |+. .........+.
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~-------~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l 164 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHA-------AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILL 164 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHH
Confidence 356899999999999987754 2234455566788888999999999999987653 443 34444688889
Q ss_pred hcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHH---HccCCHH
Q 035749 107 YANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTL-MDGF---CLTGRVN 182 (405)
Q Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~---~~~~~~~ 182 (405)
..|+++.|...++.+.+..+. +...+..+...+...|++++|.+.+..+.+.+.. +...+..+ ...+ ...+..+
T Consensus 165 ~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 165 AQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred HCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998644 6778889999999999999999999999998643 33333211 1111 2222222
Q ss_pred HHHHHHHHHHhcCC---CCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhH---HHHHHHHHccccHHHHHH
Q 035749 183 RAKELFVSMESMGC---KHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTY---NTLFIGLFEIHQVERAFK 256 (405)
Q Consensus 183 ~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~ 256 (405)
+....+..+.+... +.++..+..+...+...|+.+.|.+++++..+.. |+.... ..........++.+.+.+
T Consensus 243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~ 320 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEK 320 (409)
T ss_pred cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHH
Confidence 22333433333211 1356666677777777777777777777777652 232210 111111122344444444
Q ss_pred HHHHHHHcCCCccH--HHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 035749 257 LFDEMQRHGVAADT--WAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHS 330 (405)
Q Consensus 257 ~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 330 (405)
.++...+.. +.|+ .....+...+.+.|++++|.+.|+........|+...+..++..+.+.|+.++|.+++++
T Consensus 321 ~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 321 LIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444331 2233 333444444444455555555444322212234444444444444444554444444443
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.7e-14 Score=116.88 Aligned_cols=331 Identities=13% Similarity=0.058 Sum_probs=189.3
Q ss_pred CCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 035749 14 GCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINP 93 (405)
Q Consensus 14 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 93 (405)
+...|...+......+.+.|....|++.|....... |-.-.+|..|..... +.+. ...... +.+.
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-------P~~W~AWleL~~lit---~~e~----~~~l~~-~l~~ 223 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-------PWFWSAWLELSELIT---DIEI----LSILVV-GLPS 223 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-------CcchHHHHHHHHhhc---hHHH----HHHHHh-cCcc
Confidence 446676666667777888899999999998887654 344445555544322 1221 111111 1121
Q ss_pred ChH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC---CHHHH
Q 035749 94 DVV--TYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRP---NAFVY 168 (405)
Q Consensus 94 ~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~ 168 (405)
+.. .--.+..++-.....+++..-.+.....|.+-+...-+....+.....++++|+.+|+.+.+.. +- |..+|
T Consensus 224 ~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-PYRl~dmdly 302 (559)
T KOG1155|consen 224 DMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-PYRLDDMDLY 302 (559)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcchhHHHH
Confidence 111 1112334445555666777777777776666555555555555666777777777777777663 21 34455
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHcc
Q 035749 169 NTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEI 248 (405)
Q Consensus 169 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 248 (405)
..++-.-. +-.+.--+-......+ +--+.|...+.+-|.-.++.++|...|+..++.+ +.....|+.+..-|...
T Consensus 303 SN~LYv~~---~~skLs~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEm 377 (559)
T KOG1155|consen 303 SNVLYVKN---DKSKLSYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEM 377 (559)
T ss_pred hHHHHHHh---hhHHHHHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHh
Confidence 44432211 1111111111111111 2334455556666666666666776666666653 22334555566666666
Q ss_pred ccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 035749 249 HQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELF 328 (405)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 328 (405)
.+...|.+.++.+++-+ |.|-..+..+.++|.-.+...=|+-.|+++.... |.|...|..|+.+|.+.++.++|++.|
T Consensus 378 KNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCy 455 (559)
T KOG1155|consen 378 KNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCY 455 (559)
T ss_pred cccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHH
Confidence 66666666666666654 5566666666666666666666666666666654 556666666777776667777777666
Q ss_pred hhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 035749 329 HSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEA 368 (405)
Q Consensus 329 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 368 (405)
......+- .+...+..|...|-+.++.++|...|++.++
T Consensus 456 krai~~~d-te~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 456 KRAILLGD-TEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHhccc-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 66655432 2445666666666666666666666666554
No 42
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.78 E-value=5.9e-14 Score=118.63 Aligned_cols=388 Identities=12% Similarity=0.064 Sum_probs=204.8
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHH------------
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDG------------ 69 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------------ 69 (405)
.|..+++...+. ++.+...|..-...--.+|+.+...++.++.+..-...| +..+.+.|..=...
T Consensus 424 nAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ng--v~i~rdqWl~eAe~~e~agsv~TcQA 500 (913)
T KOG0495|consen 424 NAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANG--VEINRDQWLKEAEACEDAGSVITCQA 500 (913)
T ss_pred HHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcc--eeecHHHHHHHHHHHhhcCChhhHHH
Confidence 455666666654 455666666666666666666666666555432111111 23334444443333
Q ss_pred -------------------------HHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 70 -------------------------LCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 70 -------------------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
|.+.+.++-|..+|...++. .+.+...|...+..--..|..++...+++++...
T Consensus 501 Ii~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~ 579 (913)
T KOG0495|consen 501 IIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ 579 (913)
T ss_pred HHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 44444444444444444433 1233344444444333444555555555555444
Q ss_pred CCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHH
Q 035749 125 GVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYS 204 (405)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 204 (405)
++.....|...+..+-..|+...|..++..+.+.. +-+..+|..-+.......+++.|..+|.+.... .++...|.
T Consensus 580 -~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~m 655 (913)
T KOG0495|consen 580 -CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWM 655 (913)
T ss_pred -CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhH
Confidence 22234444444445555566666666665555543 334555555555555556666666666655543 34555555
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHhCCCCCc-hhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcC
Q 035749 205 ILINGYCKNKEIEGALSLYSEMLSKGIKPT-VVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKN 283 (405)
Q Consensus 205 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 283 (405)
--+....-.++.++|++++++.++. .|+ ...|-.+.+.+-+.++.+.|...|..-.+. .|.....+-.+...-.+.
T Consensus 656 Ks~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~ 732 (913)
T KOG0495|consen 656 KSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKD 732 (913)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHh
Confidence 4444444555566666666555553 222 224444555555555555555555544433 133334444444555555
Q ss_pred CChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCC----C------------------------
Q 035749 284 GYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRG----V------------------------ 335 (405)
Q Consensus 284 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~------------------------ 335 (405)
|.+-+|..++++.+..+ |.+...|...+++-.+.|+.+.|..+..+..+. |
T Consensus 733 ~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALk 811 (913)
T KOG0495|consen 733 GQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALK 811 (913)
T ss_pred cchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHH
Confidence 66666666666665554 556666666666666666666665555443321 0
Q ss_pred -cCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhh
Q 035749 336 -LIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMD 402 (405)
Q Consensus 336 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 402 (405)
..-|+.+...+...|....+++.|.+.|.+.++.+ +.+..+|..+...+.+.|.-++-.+++..+.
T Consensus 812 kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 812 KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 01134445555566666667777777777777653 3345566666677777776666666666553
No 43
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.78 E-value=5.6e-14 Score=118.76 Aligned_cols=335 Identities=12% Similarity=0.023 Sum_probs=273.4
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHH
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYN 99 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 99 (405)
.+|..-...|.+.+-++-|..+|..+++.. +.....|...+..--..|..+....+|+++... +|-....|.
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvf-------p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwl 588 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVF-------PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWL 588 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhc-------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHH
Confidence 467777778888888999999999998864 667788888888877889999999999999876 455667777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 035749 100 SVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTG 179 (405)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 179 (405)
.....+...|+...|..++....+..+. +...|...+.......+++.|..+|.+.... .++..+|..-+...--.+
T Consensus 589 M~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld 665 (913)
T KOG0495|consen 589 MYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLD 665 (913)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhh
Confidence 7788888899999999999999887544 7788888888899999999999999988775 678888887777777889
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHH
Q 035749 180 RVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFD 259 (405)
Q Consensus 180 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 259 (405)
..++|.+++++..+.- +.-...|..+.+.+-+.++.+.|...|..-.+. ++.....|..+...-.+.|++-+|..+++
T Consensus 666 ~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ild 743 (913)
T KOG0495|consen 666 NVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILD 743 (913)
T ss_pred hHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHH
Confidence 9999999999988763 445667888889999999999999998877665 34445566666667777889999999999
Q ss_pred HHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC-----------------------------CCccHHHHHH
Q 035749 260 EMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILK-----------------------------CELDIRSYSC 310 (405)
Q Consensus 260 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------------------------~~~~~~~~~~ 310 (405)
+..-.+ |.+...|-..+++-.+.|+.+.|..++.++++.- +.-|+.+...
T Consensus 744 rarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVlla 822 (913)
T KOG0495|consen 744 RARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLA 822 (913)
T ss_pred HHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHH
Confidence 888776 6678888888999999999999888877665321 2345666777
Q ss_pred HHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 311 LIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 311 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
+...+....++++|.+.|.+..+.+. ....+|..+...+..+|.-++-.+++.+....
T Consensus 823 ia~lfw~e~k~~kar~Wf~Ravk~d~-d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 823 IAKLFWSEKKIEKAREWFERAVKKDP-DNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC-ccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 78888888899999999999988643 36788999999999999999999999998875
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=3.2e-16 Score=132.34 Aligned_cols=290 Identities=13% Similarity=0.053 Sum_probs=231.1
Q ss_pred cCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CccHhhHHHHHHHHHcCCCHHHHH
Q 035749 73 EGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGV--QPNVVTFSVIMDELCKNGKMEEAS 150 (405)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~ 150 (405)
.-+..+|+..|+.+... +.-+.++...+..+|...+++++|.++|+.+.+..+ .-+...|...+.-+-+ +-++
T Consensus 332 ~y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~L 406 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVAL 406 (638)
T ss_pred HHHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHH
Confidence 34577899999996654 345567888899999999999999999999987521 1145666666544322 1222
Q ss_pred H-HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 035749 151 Q-LLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK 229 (405)
Q Consensus 151 ~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (405)
. +-+.+.+.. +..+.+|..+.++|.-+++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+..+..
T Consensus 407 s~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 407 SYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 2 223344443 6678999999999999999999999999999875 447889999999999999999999999998875
Q ss_pred CCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHH
Q 035749 230 GIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYS 309 (405)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 309 (405)
. +-+...|.-+...|.+.++++.|.-.|+++.+.+ |.+......+...+.+.|+.++|+++++++.... +.|+..-.
T Consensus 485 ~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~ 561 (638)
T KOG1126|consen 485 D-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKY 561 (638)
T ss_pred C-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHH
Confidence 2 2234455567788999999999999999999876 6677788888899999999999999999998877 56777777
Q ss_pred HHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 035749 310 CLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAP 373 (405)
Q Consensus 310 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 373 (405)
..+..+...+++++|+..++++.+. .+.+..+|-.++..|.+.|+.+.|+.-|--+.+.+.++
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 7788889999999999999999885 33367788889999999999999999999988864433
No 45
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.77 E-value=6.7e-15 Score=113.73 Aligned_cols=290 Identities=13% Similarity=0.141 Sum_probs=166.7
Q ss_pred cCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc---cHhhHHHHHHHHHcCCCHHHH
Q 035749 73 EGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQP---NVVTFSVIMDELCKNGKMEEA 149 (405)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a 149 (405)
+++.++|.++|-+|.+.. +.+..+..+|...|.+.|..+.|+++.+.+.++.--+ -..+...|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 456777777777776643 3445556667777777777777777777766541110 012333455566667777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHhhcCChHHHHHHHHH
Q 035749 150 SQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHN----VFSYSILINGYCKNKEIEGALSLYSE 225 (405)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~ 225 (405)
+.+|..+.+.+ .--......|+..|-...+|++|+++-+++.+.+..+. ...|.-+...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 77777766644 33445566667777777777777777776666543322 12344455555556666677777776
Q ss_pred HHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccH
Q 035749 226 MLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDI 305 (405)
Q Consensus 226 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 305 (405)
..+.+ +.....--.+.......|+++.|.+.++.+.+.+..--+.+...+..+|.+.|+.++....+..+.+.. +..
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~ 282 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGA 282 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCc
Confidence 66653 122333334555666667777777777776666544445566666667777777777776666666543 333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHc---CCCHHHHHHHHHHHHhC
Q 035749 306 RSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCA---DGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 306 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~ 369 (405)
..-..+........-.+.|...+.+-... .|+...+..++..-.. .|...+....++.|...
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 33344444444444455555554443332 4666666666655442 23445555555555543
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.76 E-value=1.6e-14 Score=111.72 Aligned_cols=297 Identities=16% Similarity=0.151 Sum_probs=230.9
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---hHHH
Q 035749 22 YSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPD---VVTY 98 (405)
Q Consensus 22 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~ 98 (405)
|-.=++.+ -.++.++|+++|-++.+.+ +.+.++...|...+.+.|..++|+.+.+.+.++.--+. ....
T Consensus 39 Yv~GlNfL-Ls~Q~dKAvdlF~e~l~~d-------~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl 110 (389)
T COG2956 39 YVKGLNFL-LSNQPDKAVDLFLEMLQED-------PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLAL 110 (389)
T ss_pred HHhHHHHH-hhcCcchHHHHHHHHHhcC-------chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 33333333 4678899999999999975 56788999999999999999999999999988621111 2345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHH
Q 035749 99 NSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPN----AFVYNTLMDG 174 (405)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~ 174 (405)
..|.+-|...|-++.|+.+|..+.+.+. --..+...|+..|-...+|++|+.+-+++.+.+..+. ...|..+...
T Consensus 111 ~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~ 189 (389)
T COG2956 111 QQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQ 189 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHH
Confidence 5678889999999999999999987642 3567788899999999999999999999988864443 3457788888
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHH
Q 035749 175 FCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERA 254 (405)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 254 (405)
+....+.+.|..++.+..+.+ +..+.+--.+.+.....|+++.|.+.++.+.+.+..--+.+...+..+|...|+.++.
T Consensus 190 ~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 190 ALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred HhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 899999999999999998875 5556666778899999999999999999999986544556778899999999999999
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc---CCHHHHHHHHhhc
Q 035749 255 FKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKS---GRLKIAWELFHSL 331 (405)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~ 331 (405)
...+..+.+.. +.......+........-.+.|...+.+-... .|+...+..++...... |...+....++.|
T Consensus 269 ~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~m 344 (389)
T COG2956 269 LNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDM 344 (389)
T ss_pred HHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHH
Confidence 99999998874 33344444555545555566676666655544 68999999998876543 3455666666666
Q ss_pred c
Q 035749 332 P 332 (405)
Q Consensus 332 ~ 332 (405)
.
T Consensus 345 v 345 (389)
T COG2956 345 V 345 (389)
T ss_pred H
Confidence 5
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=4.7e-14 Score=114.39 Aligned_cols=328 Identities=12% Similarity=0.029 Sum_probs=240.4
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhH--HH
Q 035749 58 PDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTF--SV 135 (405)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ 135 (405)
.|...+......+.+.|....|.+.|...... .|..-.+|..|.... .+.+.+ ..+... .+.+...+ -.
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~----~~l~~~-l~~~~h~M~~~F 232 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEIL----SILVVG-LPSDMHWMKKFF 232 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHH----HHHHhc-CcccchHHHHHH
Confidence 34444445555666778888888888777654 233333443333322 222222 222221 12121111 13
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC---ChhhHHHHHHHHhh
Q 035749 136 IMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKH---NVFSYSILINGYCK 212 (405)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 212 (405)
+..++....+.+++.+-.+...+.|++-+...-+....+.....++++|+.+|+++.+.. |- |..+|+.++. .+
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-PYRl~dmdlySN~LY--v~ 309 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-PYRLDDMDLYSNVLY--VK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcchhHHHHhHHHH--HH
Confidence 445566667888888888888888888777777777788889999999999999998873 22 5566766653 33
Q ss_pred cCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHH
Q 035749 213 NKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALEL 292 (405)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 292 (405)
..+- .+..+.+-...-.+--+.|...+..-|.-.++.++|...|++.++.+ +.....+..+..-|....+...|.+-
T Consensus 310 ~~~s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 310 NDKS--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hhhH--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHH
Confidence 2222 12222222111112234577788888999999999999999999986 55667788888999999999999999
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 035749 293 FRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVA 372 (405)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 372 (405)
++++.+.. |.|...|..++++|...+.+.-|+-+|++..+.. +.|+..|.+|+.+|.+.++.++|++.|.++...|-.
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 99999987 7899999999999999999999999999998863 348999999999999999999999999999987533
Q ss_pred CCHHHHHHHHHHHHccCchhHHHHHHHHhhh
Q 035749 373 PDCVAFNTLMLGCIRNNETSKVVELLHRMDE 403 (405)
Q Consensus 373 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 403 (405)
+...+..|.+.|.+.++.++|...+++.++
T Consensus 465 -e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 465 -EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred -chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 668899999999999999999999998765
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.5e-15 Score=128.41 Aligned_cols=285 Identities=14% Similarity=0.107 Sum_probs=231.3
Q ss_pred CchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCChHHHHHHHHHHHhcCC
Q 035749 33 GHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNI--NPDVVTYNSVIRGFCYAND 110 (405)
Q Consensus 33 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 110 (405)
=+..+|+..|++.... .+.+.++...+..+|...+++++|..+|+.+.+... --+..+|.+.+.-+-+.
T Consensus 333 y~~~~A~~~~~klp~h-------~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~-- 403 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-------HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE-- 403 (638)
T ss_pred HHHHHHHHHHHhhHHh-------cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh--
Confidence 3557899999995554 456678899999999999999999999999987631 12567888877654222
Q ss_pred HHHHHH-HHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 035749 111 SNEAKR-LFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFV 189 (405)
Q Consensus 111 ~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 189 (405)
-++. +-+.+.+.. +-.+.+|-.+..+|.-+++.+.|++.|++.++.+ +....+|+.+..-+....++|.|...|+
T Consensus 404 --v~Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr 479 (638)
T KOG1126|consen 404 --VALSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFR 479 (638)
T ss_pred --HHHHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHH
Confidence 1222 233344432 3478899999999999999999999999999875 4477889988888899999999999999
Q ss_pred HHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCcc
Q 035749 190 SMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAAD 269 (405)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 269 (405)
...... +.+-.+|..+...|.+.++++.|+-.|+++.+.+ +.+......++..+.+.|+.++|+.+++++.... +.|
T Consensus 480 ~Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn 556 (638)
T KOG1126|consen 480 KALGVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKN 556 (638)
T ss_pred hhhcCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCC
Confidence 998664 3455567778899999999999999999999864 3356667778888999999999999999999875 567
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCC
Q 035749 270 TWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRG 334 (405)
Q Consensus 270 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 334 (405)
+......+..+...+++++|+..++++++.- |.+..++..++..|.+.|+.+.|+.-|.-+.+.
T Consensus 557 ~l~~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 557 PLCKYHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred chhHHHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 7777777888888999999999999998863 567788999999999999999999999887764
No 49
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.74 E-value=8.4e-14 Score=110.98 Aligned_cols=286 Identities=12% Similarity=0.078 Sum_probs=165.3
Q ss_pred cCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHH
Q 035749 73 EGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQL 152 (405)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 152 (405)
.|+|.+|+++..+..+.+ +.....|..-+++.-+.|+.+.+-.++.+.-+....++........+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466777777666655554 2234445555556666667777777666666553344555555566666666777777666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChh-------hHHHHHHHHhhcCChHHHHHHHHH
Q 035749 153 LELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVF-------SYSILINGYCKNKEIEGALSLYSE 225 (405)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~ 225 (405)
+..+.+.+ +..+.......++|.+.|++.....++..+.+.+.-.+.. +|..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 66666654 4455566666666777777777777777666665433322 344444444444444444444444
Q ss_pred HHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccH
Q 035749 226 MLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDI 305 (405)
Q Consensus 226 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 305 (405)
.... .+.++..-..++.-+.++|+.++|.++..+..+++..|. +.. .-.+.+.++...-.+..++..+.. +.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 3332 233444445555566666666777666666666543333 111 122345555555555555555443 4455
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 035749 306 RSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEA 368 (405)
Q Consensus 306 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 368 (405)
..+..++..|.+.+.+.+|...|+...+ ..|+..+|+.+..++.+.|+..+|.++.++...
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6666666666666667777666665555 355666666666666666666666666666553
No 50
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=8.7e-14 Score=113.64 Aligned_cols=366 Identities=15% Similarity=0.092 Sum_probs=250.7
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHcCCCCCccccccc-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHH
Q 035749 22 YSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPD-AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNS 100 (405)
Q Consensus 22 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (405)
+.....-+.++|++++|++.|.++++.. |+ +..|.....+|...|+|+++.+.-....+.+ |.-+..+..
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~--------p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~R 188 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELC--------PDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLR 188 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcC--------CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHH
Confidence 4556677889999999999999999864 55 7788999999999999999999888887763 222344444
Q ss_pred HHHHHHhcCCHHHHHH----------------------HHHH--------HHH-CC--CCccHhhHHHHHHHHHc-----
Q 035749 101 VIRGFCYANDSNEAKR----------------------LFIE--------MMD-QG--VQPNVVTFSVIMDELCK----- 142 (405)
Q Consensus 101 l~~~~~~~~~~~~a~~----------------------~~~~--------~~~-~~--~~~~~~~~~~l~~~~~~----- 142 (405)
-..++-..|++++|+. ++.. -.+ .+ +-|+.....+....+..
T Consensus 189 RA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~ 268 (606)
T KOG0547|consen 189 RASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPL 268 (606)
T ss_pred HHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccc
Confidence 4555556666555442 1111 011 11 22333333333322211
Q ss_pred ---CCC-----HHHHHHHHHH------------HHHc------CCCCC---------HHHHHHHHHHHHccCCHHHHHHH
Q 035749 143 ---NGK-----MEEASQLLEL------------MIQI------GVRPN---------AFVYNTLMDGFCLTGRVNRAKEL 187 (405)
Q Consensus 143 ---~~~-----~~~a~~~~~~------------~~~~------~~~~~---------~~~~~~l~~~~~~~~~~~~a~~~ 187 (405)
.++ ..++.+.+.. +.+. ....+ ..+.......+.-.|+.-.|..-
T Consensus 269 ~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d 348 (606)
T KOG0547|consen 269 FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQED 348 (606)
T ss_pred ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhh
Confidence 000 1122222111 1110 00111 11222223345567888899999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCC
Q 035749 188 FVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVA 267 (405)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 267 (405)
|+..+... +.+...|--+..+|....+.++....|++....+ +-++.+|..-.+...-.+++++|..-|++.+... +
T Consensus 349 ~~~~I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-p 425 (606)
T KOG0547|consen 349 FDAAIKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-P 425 (606)
T ss_pred HHHHHhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-h
Confidence 99998875 3333447778888999999999999999998875 4467788888888888999999999999998874 4
Q ss_pred ccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcC-----ccHHH
Q 035749 268 ADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLI-----ADVVT 342 (405)
Q Consensus 268 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~ 342 (405)
.+...+..+.-+..+.+.+++++..|++..+. +|..+..|+..+..+...++++.|.+.|+...+.... .+...
T Consensus 426 e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~p 504 (606)
T KOG0547|consen 426 ENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAP 504 (606)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchh
Confidence 45666667777777889999999999999875 4777889999999999999999999999987653111 12222
Q ss_pred H--HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhh
Q 035749 343 Y--NIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMD 402 (405)
Q Consensus 343 ~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 402 (405)
+ -.++. +.-.+++..|+.+++++.+.+.+ ....+..|...-.+.|+.++|+++|++..
T Consensus 505 lV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 505 LVHKALLV-LQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhhhhHhh-hchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2 22222 22458999999999999986322 45678899999999999999999999764
No 51
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=1.3e-13 Score=112.59 Aligned_cols=354 Identities=15% Similarity=0.081 Sum_probs=252.8
Q ss_pred ChHhHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHH
Q 035749 1 MEAAALFTKLKAFGCEPN-VITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKA 79 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 79 (405)
++|++.+....+. .|+ +..|.....+|...|+|++.++.-.++++.+ |.-..++..-..++-..|++++|
T Consensus 132 ~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-------P~Y~KAl~RRA~A~E~lg~~~ea 202 (606)
T KOG0547|consen 132 DEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-------PDYVKALLRRASAHEQLGKFDEA 202 (606)
T ss_pred HHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-------cHHHHHHHHHHHHHHhhccHHHH
Confidence 5899999999987 577 8889999999999999999999999999875 34466777777888888887776
Q ss_pred HHHHH------------------H-------------HHhCC--CCCChHHHHHHHHHHHh--------cC---------
Q 035749 80 KELLL------------------Q-------------MKDKN--INPDVVTYNSVIRGFCY--------AN--------- 109 (405)
Q Consensus 80 ~~~~~------------------~-------------~~~~~--~~~~~~~~~~l~~~~~~--------~~--------- 109 (405)
+.-.. + +.+.+ +-|++....+....+.. .+
T Consensus 203 l~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~ 282 (606)
T KOG0547|consen 203 LFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAE 282 (606)
T ss_pred HHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHH
Confidence 54211 1 11011 12333332222222110 00
Q ss_pred -----------CHHHHHHHHHHHHHC---CCCcc---------HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHH
Q 035749 110 -----------DSNEAKRLFIEMMDQ---GVQPN---------VVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAF 166 (405)
Q Consensus 110 -----------~~~~a~~~~~~~~~~---~~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 166 (405)
.+..|.+.+.+-... ....+ ..+.......+.-.|+.-.+..-|+..++.. +.+..
T Consensus 283 ~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~-~~~~~ 361 (606)
T KOG0547|consen 283 ALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD-PAFNS 361 (606)
T ss_pred HHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC-cccch
Confidence 112222222211110 01111 1122222223445688889999999998875 33444
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHH
Q 035749 167 VYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLF 246 (405)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 246 (405)
.|..+..+|....+.++....|....+.+ +.++.+|..-.+.+.-.++++.|..=|++.++.. +.+...|..+.-+..
T Consensus 362 lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Y 439 (606)
T KOG0547|consen 362 LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALY 439 (606)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHH
Confidence 48888889999999999999999999887 6688888888888888899999999999999864 335566777777778
Q ss_pred ccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCC-------ccHHHHHHHHHHHHhcC
Q 035749 247 EIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCE-------LDIRSYSCLIDGLCKSG 319 (405)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~ 319 (405)
+.+++++++..|++.++. +|..+..++.....+...++++.|.+.|+........ +.+.+.-.++..- -.+
T Consensus 440 r~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~ 517 (606)
T KOG0547|consen 440 RQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKE 517 (606)
T ss_pred HHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhh
Confidence 999999999999999987 5778899999999999999999999999998876311 1122222222222 348
Q ss_pred CHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 320 RLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 320 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
++..|..++++..+...+ ....|..|...-.+.|+.++|+++|++....
T Consensus 518 d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 518 DINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred hHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999886333 4567999999999999999999999987753
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.73 E-value=1.2e-13 Score=110.19 Aligned_cols=286 Identities=12% Similarity=0.093 Sum_probs=231.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 035749 107 YANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKE 186 (405)
Q Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 186 (405)
..|+|.+|++...+-.+.+.. ....|..-+.+....|+.+.+-.++.++.+..-.++........+.....|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 469999999999998887655 3455667778888999999999999999887446667777788889999999999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchh-------hHHHHHHHHHccccHHHHHHHHH
Q 035749 187 LFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVV-------TYNTLFIGLFEIHQVERAFKLFD 259 (405)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~ 259 (405)
-+.++.+.+ +..+.......++|.+.|++.....++.++.+.+.-.+.. ++..++.-....+..+.-...++
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 999999886 6688889999999999999999999999999988655543 45556665556666666566666
Q ss_pred HHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCcc
Q 035749 260 EMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIAD 339 (405)
Q Consensus 260 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 339 (405)
..... ...++.....++.-+.+.|+.++|.++..+..+.+..|. ....-.+.+-++...-.+..+...+. .+.+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHh-CCCC
Confidence 66543 355677788889999999999999999999998876555 12223456677777777777665543 2235
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhh
Q 035749 340 VVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMD 402 (405)
Q Consensus 340 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 402 (405)
+..+..|...|.+.+.|.+|...|+...+ ..|+..+|..+..++.+.|+..+|.++.++..
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 68899999999999999999999998887 58999999999999999999999999887753
No 53
>PRK12370 invasion protein regulator; Provisional
Probab=99.67 E-value=3.5e-13 Score=120.59 Aligned_cols=266 Identities=14% Similarity=0.041 Sum_probs=175.5
Q ss_pred CChhHHHHHHHHHHh-----cCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHh---------cCChHHHHHH
Q 035749 17 PNVITYSTLINGLCR-----TGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCK---------EGFVDKAKEL 82 (405)
Q Consensus 17 ~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~ 82 (405)
.+...|...+++... .+++++|+..|+++++.+ |.+...|..+..++.. .+++++|...
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-------P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~ 326 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-------PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEH 326 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHH
Confidence 344555566555322 245679999999999976 4456677777665542 2447888888
Q ss_pred HHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC
Q 035749 83 LLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVR 162 (405)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 162 (405)
+++..+.+ |.+...+..+...+...|++++|...|++.++.++. +...+..+..++...|++++|...++++.+.+ +
T Consensus 327 ~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P 403 (553)
T PRK12370 327 AIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLD-P 403 (553)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-C
Confidence 88888775 557788888888888889999999999988887533 56677778888888899999999999888874 2
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCc-hhhHHHH
Q 035749 163 PNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPT-VVTYNTL 241 (405)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l 241 (405)
.+...+..++..+...|++++|...++++.....+.++..+..+..++...|+.++|...+.++... .|+ ....+.+
T Consensus 404 ~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l 481 (553)
T PRK12370 404 TRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLL 481 (553)
T ss_pred CChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHH
Confidence 2333334444456667888888888888776542334556677778888888888888888887654 233 3334444
Q ss_pred HHHHHccccHHHHHHHHHHHHHcC-CCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 035749 242 FIGLFEIHQVERAFKLFDEMQRHG-VAADTWAYRTFIDGLCKNGYIVEALELFRTLRIL 299 (405)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 299 (405)
...+...| +++...++.+.+.. ..+... ......+.-.|+.+.+..+ +++.+.
T Consensus 482 ~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 482 YAEYCQNS--ERALPTIREFLESEQRIDNNP--GLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHhccH--HHHHHHHHHHHHHhhHhhcCc--hHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 55556666 36666666655421 011111 1133334444555555544 555543
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.67 E-value=2.3e-13 Score=121.75 Aligned_cols=249 Identities=12% Similarity=0.041 Sum_probs=183.8
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHH---------hcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHH
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLC---------RTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLC 71 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 71 (405)
++|+..|++..+.. |.+...|..+..++. ..+++++|...++++++.+ |.++.++..+...+.
T Consensus 278 ~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-------P~~~~a~~~lg~~~~ 349 (553)
T PRK12370 278 QQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-------HNNPQALGLLGLINT 349 (553)
T ss_pred HHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHH
Confidence 36888999998874 334556766665544 2345899999999999986 567889999999999
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHH
Q 035749 72 KEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQ 151 (405)
Q Consensus 72 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 151 (405)
..|++++|...|++..+.+ |.+...+..+...+...|++++|...+++..+..+. +...+..++..+...|++++|..
T Consensus 350 ~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~ 427 (553)
T PRK12370 350 IHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIR 427 (553)
T ss_pred HccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHH
Confidence 9999999999999999885 556888999999999999999999999999987544 33333444555667899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCC-
Q 035749 152 LLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKG- 230 (405)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 230 (405)
.++++.+...+.+...+..+..++...|++++|...+.++.... +.+....+.+...|...| +.|...++.+.+..
T Consensus 428 ~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~ 504 (553)
T PRK12370 428 LGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQ 504 (553)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh
Confidence 99998876423355667788889999999999999999986652 334455566666777777 47777777766531
Q ss_pred CCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcC
Q 035749 231 IKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHG 265 (405)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 265 (405)
..+....+ ....+.-.|+.+.+..+ +++.+.+
T Consensus 505 ~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 505 RIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 11222222 33445556666666655 7776653
No 55
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=6.9e-13 Score=110.42 Aligned_cols=284 Identities=14% Similarity=0.110 Sum_probs=181.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 035749 95 VVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDG 174 (405)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (405)
......-..-+...+++.+..++.+...+.. ++....+..-+.++...|+..+-..+=.++.+.- |..+.+|..+.--
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCY 321 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHH
Confidence 3334444455566677777777777776652 3455555555667777777666666666666552 5556677777777
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHH
Q 035749 175 FCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERA 254 (405)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 254 (405)
|...|+.++|.+.|.+....+ +.-...|-.+...|.-.+..+.|+..|..+-+. ++-...-+--+..-|.+.++.+.|
T Consensus 322 Yl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 777777777777777776654 334556777777777777777777777766553 111222223344456667777777
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhc----CCC-c-cHHHHHHHHHHHHhcCCHHHHHHHH
Q 035749 255 FKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRIL----KCE-L-DIRSYSCLIDGLCKSGRLKIAWELF 328 (405)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~ 328 (405)
.+.|.+..... |.|+..++.+.-.....+.+.+|..+|+..+.. ... + ...+++.++.+|.+.+.+++|+..+
T Consensus 400 e~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 400 EKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 77777777653 556666666666666677777777777776522 111 1 2345677777777777777777777
Q ss_pred hhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 035749 329 HSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCI 386 (405)
Q Consensus 329 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 386 (405)
++..... +-+..++..++-.|...|+++.|++.|.+.+. +.|+..+...++..+.
T Consensus 479 q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 479 QKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 7766542 33677777777777777777777777777765 4666655555555443
No 56
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=3.2e-12 Score=106.53 Aligned_cols=366 Identities=11% Similarity=-0.009 Sum_probs=240.8
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCChHHHHH
Q 035749 22 YSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK-NINPDVVTYNS 100 (405)
Q Consensus 22 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ 100 (405)
+..-...|....+.++|...|.+++..+ ....+.+..++....-. ..+-..+++.+.-. ...-+......
T Consensus 144 c~lRgk~y~al~n~~~ar~~Y~~Al~~D-------~~c~Ea~~~lvs~~mlt--~~Ee~~ll~~l~~a~~~~ed~e~l~~ 214 (611)
T KOG1173|consen 144 CYLRGKVYVALDNREEARDKYKEALLAD-------AKCFEAFEKLVSAHMLT--AQEEFELLESLDLAMLTKEDVERLEI 214 (611)
T ss_pred eeeeeehhhhhccHHHHHHHHHHHHhcc-------hhhHHHHHHHHHHHhcc--hhHHHHHHhcccHHhhhhhHHHHHHH
Confidence 3444556777778888888888887544 22334444444443322 12223333321100 01123333333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 035749 101 VIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGR 180 (405)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (405)
+.....-...-+.....-.+..-.+..-+.........-+...+++.+..++.+.+.+.. ++....+..-|.++...|+
T Consensus 215 lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~ 293 (611)
T KOG1173|consen 215 LYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGK 293 (611)
T ss_pred HHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcc
Confidence 333221111111111111111122334466666677777888888888888888888774 6666666666678888888
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHH
Q 035749 181 VNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDE 260 (405)
Q Consensus 181 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 260 (405)
..+-..+-.++.+.- |..+.+|-.+.-.|...|+..+|.+.|.+....+.. =...|-....+|.-.+..++|+..+..
T Consensus 294 ~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~t 371 (611)
T KOG1173|consen 294 SNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFT 371 (611)
T ss_pred cchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHH
Confidence 888777777777764 667778888888888888889999988887664311 123566777788888888888888887
Q ss_pred HHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCC-----
Q 035749 261 MQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGV----- 335 (405)
Q Consensus 261 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----- 335 (405)
+.+.- +.....+-.+..-|.+.++.+.|.++|.++.... |.|+.+.+.+.......+.+.+|..+|+......
T Consensus 372 Aarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~ 449 (611)
T KOG1173|consen 372 AARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN 449 (611)
T ss_pred HHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc
Confidence 76642 2233334445566777888888988888887764 6778888888888888888888888887754210
Q ss_pred -cCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhh
Q 035749 336 -LIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMD 402 (405)
Q Consensus 336 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 402 (405)
..--..+++.|+.+|.+.+.+++|+..+++.+.. .+.+..++.++.-.|...|+++.|.+.|++..
T Consensus 450 e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 450 EKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred cccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 1113456788888888889999999998888876 45578888888888888899999888888764
No 57
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.65 E-value=3.6e-14 Score=110.03 Aligned_cols=230 Identities=14% Similarity=0.058 Sum_probs=198.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHc
Q 035749 168 YNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFE 247 (405)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 247 (405)
-+.+.++|.+.|.+.+|.+.++..... .|-+.+|..|...|.+..++..|+.++.+.++. ++.++.....+.+.+..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 367889999999999999999998877 678889999999999999999999999998876 34455555667788889
Q ss_pred cccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 035749 248 IHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWEL 327 (405)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 327 (405)
.++.++|.++++...+.. +.+...+..+...|.-.++++-|+.+++++...| ..++..|..+.-+|...+++|-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHH
Confidence 999999999999998875 6678888888888999999999999999999999 56889999999999999999999999
Q ss_pred HhhccCCCcCcc--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhh
Q 035749 328 FHSLPRGVLIAD--VVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDE 403 (405)
Q Consensus 328 ~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 403 (405)
|++.....-.|+ ..+|-.+....+..|++..|.+.|+-.+..+ ..+...++.|...-.+.|+.++|+.++.....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 988765433333 5678889988999999999999999998873 44678899999889999999999999987654
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.64 E-value=6.8e-13 Score=106.31 Aligned_cols=199 Identities=17% Similarity=0.100 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHH
Q 035749 60 AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDE 139 (405)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (405)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 4445555555555555555555555554432 333444455555555555555555555555544222 33444445555
Q ss_pred HHcCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHH
Q 035749 140 LCKNGKMEEASQLLELMIQIGV-RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEG 218 (405)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (405)
+...|++++|...+++..+... +.....+..+..++...|++++|...+.+..... +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 5555555555555555544321 1123344445555555566666666665555443 2334455555555556666666
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHH
Q 035749 219 ALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQ 262 (405)
Q Consensus 219 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 262 (405)
|...+++.... .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666655544 12233444444555555566666655555444
No 59
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.60 E-value=2e-13 Score=105.98 Aligned_cols=235 Identities=14% Similarity=0.004 Sum_probs=185.9
Q ss_pred cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 035749 129 NVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILIN 208 (405)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 208 (405)
|..--+.+.++|.+.|.+.+|.+.++..++. .|-+.+|..|.+.|.+..++..|+.++.+-.+.- |.++.......+
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~AR 298 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQAR 298 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHH
Confidence 4444467788888999999999988888776 5677788888889999999999999888887763 445555566777
Q ss_pred HHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHH
Q 035749 209 GYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVE 288 (405)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 288 (405)
.+-..++.++|.++|+...+.. +.+......+...|.-.++++.|+.++++++..| ..++..|..+.-+|...++++-
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhh
Confidence 7888888899999998888763 4456666666777888888999999999998888 4578888888888888889999
Q ss_pred HHHHHHHHHhcCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 035749 289 ALELFRTLRILKCELD--IRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDM 366 (405)
Q Consensus 289 a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 366 (405)
++.-|+++...-..|+ ..+|..+.......|++..|.+.|+-...+.. .+...++.|...-.+.|+.++|..++..+
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 9888888876543343 45688888888888999999999988776532 36788888888888899999999999888
Q ss_pred HhC
Q 035749 367 EAK 369 (405)
Q Consensus 367 ~~~ 369 (405)
...
T Consensus 456 ~s~ 458 (478)
T KOG1129|consen 456 KSV 458 (478)
T ss_pred hhh
Confidence 764
No 60
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.60 E-value=3.2e-12 Score=102.44 Aligned_cols=204 Identities=14% Similarity=0.046 Sum_probs=171.3
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 035749 92 NPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTL 171 (405)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 171 (405)
......+..+...+...|++++|...+++..+..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~ 105 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNY 105 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 34467788899999999999999999999987643 357788888999999999999999999999875 5567788889
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCC-CCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHcccc
Q 035749 172 MDGFCLTGRVNRAKELFVSMESMGC-KHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQ 250 (405)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 250 (405)
...+...|++++|...+++...... +.....+..+...+...|++++|...+.+..... +.+...+..+...+...|+
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQ 184 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCC
Confidence 9999999999999999999987532 2345567778889999999999999999998863 3345678888899999999
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 035749 251 VERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRIL 299 (405)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 299 (405)
+++|...+++.... .+.+...+......+...|+.++|..+.+.+...
T Consensus 185 ~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 185 YKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999999876 3556677777888888999999999998877653
No 61
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.59 E-value=2.2e-10 Score=99.30 Aligned_cols=383 Identities=15% Similarity=0.043 Sum_probs=266.9
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 035749 8 TKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMK 87 (405)
Q Consensus 8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 87 (405)
..+....+.-++..|..+.-++...|+++.+.+.|++....- -.....|..+...+...|.-..|+.+++.-.
T Consensus 312 ~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-------~~~~e~w~~~als~saag~~s~Av~ll~~~~ 384 (799)
T KOG4162|consen 312 RKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-------FGEHERWYQLALSYSAAGSDSKAVNLLRESL 384 (799)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-------hhhHHHHHHHHHHHHHhccchHHHHHHHhhc
Confidence 334444456788899999999999999999999999987542 3456789999999999999999999998876
Q ss_pred hCCC-CCChHHHHHHHHHHH-hcCCHHHHHHHHHHHHHC--CC--CccHhhHHHHHHHHHcC-----------CCHHHHH
Q 035749 88 DKNI-NPDVVTYNSVIRGFC-YANDSNEAKRLFIEMMDQ--GV--QPNVVTFSVIMDELCKN-----------GKMEEAS 150 (405)
Q Consensus 88 ~~~~-~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~ 150 (405)
...- ++++..+-.....|. +.+..++++++-.+.+.. +. ......+..+.-+|... ....++.
T Consensus 385 ~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ksl 464 (799)
T KOG4162|consen 385 KKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSL 464 (799)
T ss_pred ccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHH
Confidence 5432 334444444444444 446777777777776652 11 11233444444444321 1246788
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 035749 151 QLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKG 230 (405)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 230 (405)
+.+++..+.+ +.|+.+...+.--|+..++.+.|.+..++..+.+...+...|..+.-.+...+++.+|+.+.+.....-
T Consensus 465 qale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~ 543 (799)
T KOG4162|consen 465 QALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF 543 (799)
T ss_pred HHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Confidence 8888888876 455566556666788899999999999999998667889999999999999999999999998876641
Q ss_pred CCCc---------------------hhhHHHHHHHHH-----------------------ccccHHHHHHHHHHHH----
Q 035749 231 IKPT---------------------VVTYNTLFIGLF-----------------------EIHQVERAFKLFDEMQ---- 262 (405)
Q Consensus 231 ~~~~---------------------~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~---- 262 (405)
|+ ..|...++..+- ..++..++.+....+.
T Consensus 544 --~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a 621 (799)
T KOG4162|consen 544 --GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA 621 (799)
T ss_pred --hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH
Confidence 11 011111111111 0001111111111110
Q ss_pred ----HcC---------CC--cc------HHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCH
Q 035749 263 ----RHG---------VA--AD------TWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRL 321 (405)
Q Consensus 263 ----~~~---------~~--~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 321 (405)
..+ .. |+ ...+......+...+..++|...+.++.... +.....|...+..+...|..
T Consensus 622 ~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~ 700 (799)
T KOG4162|consen 622 SQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQL 700 (799)
T ss_pred hhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhh
Confidence 000 00 11 1123344556677788888888887777654 66778888888999999999
Q ss_pred HHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHH
Q 035749 322 KIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHD--LFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLH 399 (405)
Q Consensus 322 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 399 (405)
.+|.+.|....... +.++....++..++.+.|+..-|.. ++..+.+.+ +.+...|..+...+.+.|+.++|.++|.
T Consensus 701 ~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 701 EEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred HHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 99999998887642 2257788899999999998887877 999999874 5588999999999999999999999998
Q ss_pred Hhhh
Q 035749 400 RMDE 403 (405)
Q Consensus 400 ~~~~ 403 (405)
...+
T Consensus 779 aa~q 782 (799)
T KOG4162|consen 779 AALQ 782 (799)
T ss_pred HHHh
Confidence 7654
No 62
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.59 E-value=2.3e-11 Score=105.44 Aligned_cols=297 Identities=15% Similarity=0.122 Sum_probs=214.9
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHH
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNS 100 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (405)
..-.....+...|++++|++.+++-... +.............+.+.|+.++|..+|..+++.+ |.+..-|..
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~-------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~ 77 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQ-------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRG 77 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhh-------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH
Confidence 3444556778999999999999886654 45667788899999999999999999999999986 555666666
Q ss_pred HHHHHHhc-----CCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 035749 101 VIRGFCYA-----NDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKM-EEASQLLELMIQIGVRPNAFVYNTLMDG 174 (405)
Q Consensus 101 l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (405)
+..+.... .+.+....+|+++...- |.......+.-.+.....+ ..+...+..+...|+| .+|..+-..
T Consensus 78 L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~L 152 (517)
T PF12569_consen 78 LEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPL 152 (517)
T ss_pred HHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHH
Confidence 66665222 25677888999887653 3434433333333332233 3455667777888854 356666666
Q ss_pred HHccCCHHHHHHHHHHHHhc----C----------CCCCh--hhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhH
Q 035749 175 FCLTGRVNRAKELFVSMESM----G----------CKHNV--FSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTY 238 (405)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (405)
|....+..-...++...... + -+|+. .++..+.+.|...|++++|++.+++.+... +..+..|
T Consensus 153 y~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely 231 (517)
T PF12569_consen 153 YKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELY 231 (517)
T ss_pred HcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHH
Confidence 66555555555555554322 1 12333 345667888999999999999999999973 2236678
Q ss_pred HHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccH--------HHHHH
Q 035749 239 NTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDI--------RSYSC 310 (405)
Q Consensus 239 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~ 310 (405)
..-...+-+.|++.+|...++.....+ ..|...-+..+..+.+.|+.++|.+++......+..|.. .....
T Consensus 232 ~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e 310 (517)
T PF12569_consen 232 MTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETE 310 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHH
Confidence 888889999999999999999999886 567778888888999999999999999998776543322 22355
Q ss_pred HHHHHHhcCCHHHHHHHHhhcc
Q 035749 311 LIDGLCKSGRLKIAWELFHSLP 332 (405)
Q Consensus 311 l~~~~~~~~~~~~a~~~~~~~~ 332 (405)
.+.+|.+.|++..|++.|..+.
T Consensus 311 ~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 311 CAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHhhHHHHHHHHHHHH
Confidence 6778999999999988776654
No 63
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.56 E-value=1.8e-10 Score=99.97 Aligned_cols=299 Identities=18% Similarity=0.110 Sum_probs=213.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHH
Q 035749 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELC 141 (405)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (405)
...-....+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.++. |...|..+..+..
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g 83 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHh
Confidence 3444455678899999999999886554 4555677778899999999999999999999998643 5556666666552
Q ss_pred c-----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCC
Q 035749 142 K-----NGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRV-NRAKELFVSMESMGCKHNVFSYSILINGYCKNKE 215 (405)
Q Consensus 142 ~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 215 (405)
- ..+.+....+++.+... -|.......+.-.+.....+ ..+..++..+...|+| .+++.+-..|....+
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEK 158 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhH
Confidence 2 23578888889888765 24444443333222222223 3455566667777754 356666666665555
Q ss_pred hHHHHHHHHHHHhC----C----------CCCch--hhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 035749 216 IEGALSLYSEMLSK----G----------IKPTV--VTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDG 279 (405)
Q Consensus 216 ~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 279 (405)
.+-..+++...... + -+|+. .++..+...|...|++++|+.+++..+++. |..+..|..-...
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~Kari 237 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 55556666655432 1 12333 244566778889999999999999999984 4457788888999
Q ss_pred HhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccH------HHH--HHHHHHHH
Q 035749 280 LCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADV------VTY--NIMIHALC 351 (405)
Q Consensus 280 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~--~~l~~~~~ 351 (405)
+-..|++.+|.+.++.++..+ .-|..+-+..+..+.++|+.++|.+++....+.+..|.. ..| ...+.+|.
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~ 316 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL 316 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887 557777777888899999999999999988776543321 122 34467889
Q ss_pred cCCCHHHHHHHHHHHHhC
Q 035749 352 ADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 352 ~~g~~~~A~~~~~~~~~~ 369 (405)
+.|++..|++.|..+.+.
T Consensus 317 r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 317 RQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 999999998877776653
No 64
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.56 E-value=8.1e-10 Score=94.08 Aligned_cols=364 Identities=13% Similarity=0.073 Sum_probs=180.8
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHH
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVT 97 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (405)
+...|+.+.-.+....++++|++.|..++..+ +.|..+|..+...-++.++++........+.+.. +.....
T Consensus 74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-------~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~ 145 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-------KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRAS 145 (700)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHH
Confidence 34455555555555555555555555555543 4445555555555555555555555554444432 223444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCccHhhHHHHH------HHHHcCCCHHHHHHHHHHHHHcCCCCCHHHH-H
Q 035749 98 YNSVIRGFCYANDSNEAKRLFIEMMDQG-VQPNVVTFSVIM------DELCKNGKMEEASQLLELMIQIGVRPNAFVY-N 169 (405)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~ 169 (405)
|..++.++.-.|+...|..+++...+.. -.|+...+.... ....+.|..++|.+.+...... ..|...+ .
T Consensus 146 w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e 223 (700)
T KOG1156|consen 146 WIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEE 223 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhh
Confidence 5555555555566666666555555442 123333332211 1223445555555544433222 1111111 2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHH-HHHHHHhhcCChHHHH-HHHHHHHhCCCCCchhhHHHHHHHHHc
Q 035749 170 TLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYS-ILINGYCKNKEIEGAL-SLYSEMLSKGIKPTVVTYNTLFIGLFE 247 (405)
Q Consensus 170 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~ 247 (405)
.-...+.+.++.++|..++..+... .||...|. .+..++.+..+.-++. .+|....+. .|-......+-.....
T Consensus 224 ~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~ 299 (700)
T KOG1156|consen 224 TKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLN 299 (700)
T ss_pred hHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhC
Confidence 3334455566666666666666555 23333333 2333332222222222 333333332 1111111111111111
Q ss_pred -cccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHH--------hcC----------CCccHH--
Q 035749 248 -IHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLR--------ILK----------CELDIR-- 306 (405)
Q Consensus 248 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~----------~~~~~~-- 306 (405)
.+-.+..-.++..+.+.|+++-. ..+...|-... ++- +++++. ..+ -+|...
T Consensus 300 ~eel~~~vdkyL~~~l~Kg~p~vf---~dl~SLyk~p~---k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllW 372 (700)
T KOG1156|consen 300 GEELKEIVDKYLRPLLSKGVPSVF---KDLRSLYKDPE---KVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLW 372 (700)
T ss_pred cchhHHHHHHHHHHHhhcCCCchh---hhhHHHHhchh---HhH-HHHHHHHHHHhhcccccCCCcccccccCCchHHHH
Confidence 11223334444555555544322 22222221111 111 222221 000 144443
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 035749 307 SYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCI 386 (405)
Q Consensus 307 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 386 (405)
++..++..+-..|+++.|...++....+. +.-+..|..-.+.+...|++++|...+++..+.+ .+|...-..-+.-..
T Consensus 373 t~y~laqh~D~~g~~~~A~~yId~AIdHT-PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmL 450 (700)
T KOG1156|consen 373 TLYFLAQHYDKLGDYEVALEYIDLAIDHT-PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYML 450 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhccC-chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHH
Confidence 34566777888999999999999988862 2235566666788889999999999999998864 345544445566677
Q ss_pred ccCchhHHHHHHHHhhhc
Q 035749 387 RNNETSKVVELLHRMDER 404 (405)
Q Consensus 387 ~~g~~~~a~~~~~~~~~~ 404 (405)
++++.++|.++.-.+...
T Consensus 451 rAn~i~eA~~~~skFTr~ 468 (700)
T KOG1156|consen 451 RANEIEEAEEVLSKFTRE 468 (700)
T ss_pred HccccHHHHHHHHHhhhc
Confidence 888888888888776654
No 65
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=7.7e-11 Score=93.01 Aligned_cols=349 Identities=13% Similarity=0.124 Sum_probs=176.4
Q ss_pred HHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 035749 25 LINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRG 104 (405)
Q Consensus 25 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (405)
+..++.+.|++++|...+..+.+.. .++...+..|..++.-.|.+.+|..+-.+..+ ++.....+...
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~-------~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhl 130 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKD-------DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHL 130 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccC-------CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHH
Confidence 4455566666666666666655543 34455555555555555666666655443322 33333444444
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHccCCHHH
Q 035749 105 FCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNT-LMDGFCLTGRVNR 183 (405)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~ 183 (405)
.-+.|+-++-...-+.+.+. ...-.++.......-.+.+|++++.+.+.. .|.-...+. +.-+|.+..-++-
T Consensus 131 ahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydv 203 (557)
T KOG3785|consen 131 AHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDV 203 (557)
T ss_pred HHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhh
Confidence 44555544444443333221 122233444444555678888888888765 344444443 3446677777777
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHhhcCCh-----------------------------------HHHHHHHHHHHh
Q 035749 184 AKELFVSMESMGCKHNVFSYSILINGYCKNKEI-----------------------------------EGALSLYSEMLS 228 (405)
Q Consensus 184 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------------------------------~~a~~~~~~~~~ 228 (405)
+.++++-..+.- +.++.+.|..+....+.-+- +.|++++-.+..
T Consensus 204 sqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~ 282 (557)
T KOG3785|consen 204 SQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMK 282 (557)
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHh
Confidence 777777766552 34444444444333332111 112222222111
Q ss_pred CCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHH-hc----CCChHHHHHHHHHHHhcCCCc
Q 035749 229 KGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGL-CK----NGYIVEALELFRTLRILKCEL 303 (405)
Q Consensus 229 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~----~~~~~~a~~~~~~~~~~~~~~ 303 (405)
. -| ..-..++..|.+.+++.+|..+.+++... .|....+..++.+- .+ .....-|.+.|+-.-..+...
T Consensus 283 ~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ec 356 (557)
T KOG3785|consen 283 H--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALEC 356 (557)
T ss_pred h--Ch--HhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccc
Confidence 1 11 12234455678889999999888776432 33333333333221 11 112333444444332222111
Q ss_pred -----------------------------------cHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHH
Q 035749 304 -----------------------------------DIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIH 348 (405)
Q Consensus 304 -----------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 348 (405)
|......++++++..|++.+|.++|-.+....++.+..-...|.+
T Consensus 357 DTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LAr 436 (557)
T KOG3785|consen 357 DTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLAR 436 (557)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHH
Confidence 111123455666667777777777766655444433333345566
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHccCchhHHHHHHHHhh
Q 035749 349 ALCADGKMDKAHDLFLDMEAKGVAPDCVAF-NTLMLGCIRNNETSKVVELLHRMD 402 (405)
Q Consensus 349 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~ 402 (405)
+|.+.++++.|+.++-++-. +.+.... ..+...|.+.+++--|-+.|+.+.
T Consensus 437 Cyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 437 CYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELE 488 (557)
T ss_pred HHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 77777777777666544322 2222222 333456777777766666666554
No 66
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.55 E-value=5.4e-12 Score=110.58 Aligned_cols=255 Identities=17% Similarity=0.204 Sum_probs=170.7
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHH
Q 035749 5 ALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLL 84 (405)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 84 (405)
.+|-.+...|+.|+..+|.++|..|+..|+.+.|- +|.-|.-.. .+.+...|+.++......++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks------Lpv~e~vf~~lv~sh~~And~Enpk---- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS------LPVREGVFRGLVASHKEANDAENPK---- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc------ccccchhHHHHHhcccccccccCCC----
Confidence 56778888999999999999999999999999998 999988776 6778889999999888888887765
Q ss_pred HHHhCCCCCChHHHHHHHHHHHhcCCHHH---HHHHHHHHH----HCCCCccHhhHH--------------HHHHHHHcC
Q 035749 85 QMKDKNINPDVVTYNSVIRGFCYANDSNE---AKRLFIEMM----DQGVQPNVVTFS--------------VIMDELCKN 143 (405)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~----~~~~~~~~~~~~--------------~l~~~~~~~ 143 (405)
.|.+.+|..|..+|...||+.. ..+.+..+. ..|+......+- ..+......
T Consensus 80 -------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~e 152 (1088)
T KOG4318|consen 80 -------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLE 152 (1088)
T ss_pred -------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHH
Confidence 5788999999999999998754 222222221 122221111111 112222233
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHH
Q 035749 144 GKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLY 223 (405)
Q Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 223 (405)
|-++.+++++..+...... . .+..+++-+.... .-..++........-.+++.++..++..-...|+.+.|..++
T Consensus 153 glwaqllkll~~~Pvsa~~-~--p~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 153 GLWAQLLKLLAKVPVSAWN-A--PFQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHHHHhhCCccccc-c--hHHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 4444444444333221100 0 1111233222222 223333333332222578888888888888888889999999
Q ss_pred HHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCC
Q 035749 224 SEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGY 285 (405)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 285 (405)
..|.+.|++.+..-|..++-+ .++...+..++.-|.+.|+.|+..|+...+..+..+|.
T Consensus 228 ~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 888888888777766666554 77777888888888888888888888887777777554
No 67
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.52 E-value=1.4e-11 Score=105.48 Aligned_cols=244 Identities=19% Similarity=0.126 Sum_probs=157.4
Q ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHcCC-CCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----C--
Q 035749 19 VITYSTLINGLCRTGHTIVALNLFEEMINGN-GEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK-----N-- 90 (405)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-- 90 (405)
..+...+...|...|++++|..+++.+++.- ..+|...+.-....+.+...|...+++.+|..+|+++... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 3567779999999999999999999988761 0001002222344556888899999999999999988643 1
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-Ccc-HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC---
Q 035749 91 INPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQ-----GV-QPN-VVTFSVIMDELCKNGKMEEASQLLELMIQIG--- 160 (405)
Q Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 160 (405)
.+.-..+++.|..+|.+.|++++|...++...+. +. .|. ...++.+...+...+++++|..+++...+.-
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1223456777888899999998888887776542 11 112 2235556667777888888888877655431
Q ss_pred CC----CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC-------CCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 035749 161 VR----PNAFVYNTLMDGFCLTGRVNRAKELFVSMESMG-------CKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK 229 (405)
Q Consensus 161 ~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (405)
+. ....+++.+...|...|++++|.++++++.... ..-....++.+...|.+.+++.+|.++|.+....
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 11 123467777777778888888877777765431 1112335566667777777777777666654321
Q ss_pred ----CC-CC-chhhHHHHHHHHHccccHHHHHHHHHHHH
Q 035749 230 ----GI-KP-TVVTYNTLFIGLFEIHQVERAFKLFDEMQ 262 (405)
Q Consensus 230 ----~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 262 (405)
|+ .| ...+|..|...|...|+++.|.++...+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 11 11 23456666667777777777776666554
No 68
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.52 E-value=1e-11 Score=106.22 Aligned_cols=241 Identities=18% Similarity=0.145 Sum_probs=177.8
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-----CC-CCChh-hHHHHHHHHhhcCChHHHHHHHHHHHhC-----
Q 035749 162 RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESM-----GC-KHNVF-SYSILINGYCKNKEIEGALSLYSEMLSK----- 229 (405)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 229 (405)
|.-..+...+...|...|+++.|+.+++...+. |. .|... ..+.+...|...+++++|..+|+++...
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 334456677889999999999999999987654 11 22222 3445778899999999999999998753
Q ss_pred C-CCCc-hhhHHHHHHHHHccccHHHHHHHHHHHHHc-----CC-Ccc-HHHHHHHHHHHhcCCChHHHHHHHHHHHhcC
Q 035749 230 G-IKPT-VVTYNTLFIGLFEIHQVERAFKLFDEMQRH-----GV-AAD-TWAYRTFIDGLCKNGYIVEALELFRTLRILK 300 (405)
Q Consensus 230 ~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 300 (405)
| ..|. ..+++.|..+|.+.|++++|..+++.+.+- +. .|. ...+..+...+...+++++|..+++...+.-
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 2 1222 346778888899999999998888876531 11 122 2346667778888999999999998765431
Q ss_pred ---CC----ccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCC-------cCccHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 035749 301 ---CE----LDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGV-------LIADVVTYNIMIHALCADGKMDKAHDLFLDM 366 (405)
Q Consensus 301 ---~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 366 (405)
+. .-..++..+...|...|++++|.+++++++... ..-....++.+...|.+.+++.+|.++|.+.
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 11 224678999999999999999999998875421 1112456788999999999999999998876
Q ss_pred HhC----C--CCCCHHHHHHHHHHHHccCchhHHHHHHHHhh
Q 035749 367 EAK----G--VAPDCVAFNTLMLGCIRNNETSKVVELLHRMD 402 (405)
Q Consensus 367 ~~~----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 402 (405)
... | .+....+|..|...|.+.|++++|.++.+.+.
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 543 2 22334688999999999999999999988765
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=3.9e-10 Score=90.85 Aligned_cols=271 Identities=12% Similarity=0.035 Sum_probs=181.7
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 035749 91 INPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNT 170 (405)
Q Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (405)
++.|+.....+..++...|+..+|+..|++....++. +........-.+...|+.+....+...+.... +-+...|..
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 4567777777888888888888888888877654221 33333344445566777777777777766543 233334444
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHcccc
Q 035749 171 LMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQ 250 (405)
Q Consensus 171 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 250 (405)
-+......+++..|+.+-++.++.+ +.+...+-.-...+...+++++|.-.|+...... +.+...|..++.+|...|.
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhch
Confidence 4455556677888888887777664 4456666666677777888888888888776642 3466778888888888888
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHH-HH-HhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 035749 251 VERAFKLFDEMQRHGVAADTWAYRTFI-DG-LCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELF 328 (405)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 328 (405)
+.+|...-....+. .+.+..++..+. .. +.....-++|.++++...... |.-....+.++..+...|..+.++.++
T Consensus 384 ~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 384 FKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHH
Confidence 88887776665554 244555554442 22 223334567777777776653 334456677777788888888888888
Q ss_pred hhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 329 HSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 329 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
++.... .||....+.|...+...+.+++|++.|..++..
T Consensus 462 e~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 462 EKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 877653 567777788888888888888888888887765
No 70
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.51 E-value=6.2e-09 Score=88.82 Aligned_cols=389 Identities=10% Similarity=0.075 Sum_probs=250.7
Q ss_pred HhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChH---HH
Q 035749 3 AAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVD---KA 79 (405)
Q Consensus 3 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a 79 (405)
++.++++.++. ++..-+-.|..++..+++++|.+.+...+....-.+...+.+...|..+.....+..+.- ..
T Consensus 157 s~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv 232 (835)
T KOG2047|consen 157 SIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV 232 (835)
T ss_pred HHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH
Confidence 45566666643 344466778888899999999999988876543322223556667777777666654332 23
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcC----------------
Q 035749 80 KELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKN---------------- 143 (405)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------------- 143 (405)
..+++.+...-...-...|.+|...|++.|.+++|.++|++.+.. ..+..-|+.+..+|+.-
T Consensus 233 daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~ 310 (835)
T KOG2047|consen 233 DAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEES 310 (835)
T ss_pred HHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 344444443311112457899999999999999999999998875 22444444444444321
Q ss_pred C------CHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC------Ch
Q 035749 144 G------KMEEASQLLELMIQIG-----------VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKH------NV 200 (405)
Q Consensus 144 ~------~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~ 200 (405)
+ +++-....|+.+.... -+-++..|..-.. ...|+..+....+.++...- .| -.
T Consensus 311 ~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~ 387 (835)
T KOG2047|consen 311 GNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTV-DPKKAVGSPG 387 (835)
T ss_pred cChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHcc-CcccCCCChh
Confidence 1 1223333444443321 0223333333333 34566777777777776531 22 23
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCc---hhhHHHHHHHHHccccHHHHHHHHHHHHHcCCC----------
Q 035749 201 FSYSILINGYCKNKEIEGALSLYSEMLSKGIKPT---VVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVA---------- 267 (405)
Q Consensus 201 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------- 267 (405)
..|..+...|-..|+.+.|..+|++......+.- ..+|......-.+..+++.|+++++......-.
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 4688889999999999999999999987643221 235555566666788899999998887542111
Q ss_pred -c------cHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCcc-
Q 035749 268 -A------DTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIAD- 339 (405)
Q Consensus 268 -~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~- 339 (405)
+ +...+...++.....|-++....+++++....+ .++......+..+....-++++.+++++-+..-..|+
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 1 233455566666677899999999999988764 4555555555566677779999999998776544444
Q ss_pred HHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHccCchhHHHHHHHHhh
Q 035749 340 VVTYNIMIHALCA---DGKMDKAHDLFLDMEAKGVAPDCVA--FNTLMLGCIRNNETSKVVELLHRMD 402 (405)
Q Consensus 340 ~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~ 402 (405)
...|+..+..+.+ .-+.+.|..+|+++++ |.+|...- |......-.+.|-...|+.++++..
T Consensus 547 ~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 547 YDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3567777776664 3478999999999999 56665432 2222333446688888888888764
No 71
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=4.7e-10 Score=90.43 Aligned_cols=292 Identities=13% Similarity=0.033 Sum_probs=219.7
Q ss_pred HhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcC
Q 035749 30 CRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYAN 109 (405)
Q Consensus 30 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 109 (405)
+..++...|...+-.+..... ++.+......+..++...|+.++|+..|++....+ +.+..........+.+.|
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~-----lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg 280 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTT-----LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEG 280 (564)
T ss_pred HHhcccchhhhHHHHHHhhcc-----CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhcc
Confidence 345555555555544433221 57788999999999999999999999999988653 333333444455566788
Q ss_pred CHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 035749 110 DSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFV 189 (405)
Q Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 189 (405)
+.+....+...+.... ..+...|..-+.......+++.|+.+-++.++.+ +.+...+..-...+...++.++|.-.|+
T Consensus 281 ~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR 358 (564)
T KOG1174|consen 281 GCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFR 358 (564)
T ss_pred CHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHH
Confidence 8888888877776542 2244445555556667789999999999998875 4556666666778889999999999999
Q ss_pred HHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHH-HH-HHccccHHHHHHHHHHHHHcCCC
Q 035749 190 SMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLF-IG-LFEIHQVERAFKLFDEMQRHGVA 267 (405)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~-~~~~~~~~~a~~~~~~~~~~~~~ 267 (405)
...... |.+..+|..|+..|...|++.+|.-.-+..... ++.+..+...+. .. +....--++|.++++..+... |
T Consensus 359 ~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P 435 (564)
T KOG1174|consen 359 TAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-P 435 (564)
T ss_pred HHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-C
Confidence 998774 568899999999999999999998877766554 233455555442 22 223334688999999888763 3
Q ss_pred ccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCC
Q 035749 268 ADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRG 334 (405)
Q Consensus 268 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 334 (405)
.-......+...+...|..+.+..++++.... .||....+.++..+...+.+.+|.+.|....+.
T Consensus 436 ~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 436 IYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred ccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 34567778888999999999999999998865 689999999999999999999999999988774
No 72
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.49 E-value=1.6e-10 Score=94.90 Aligned_cols=223 Identities=14% Similarity=-0.009 Sum_probs=127.2
Q ss_pred hcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCC
Q 035749 31 RTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYAND 110 (405)
Q Consensus 31 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 110 (405)
..+..+.++.-+.+++...+.. ....+..|..+...+...|++++|...|++..+.. |.++..|+.+...+...|+
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~---~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~ 113 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLT---DEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGN 113 (296)
T ss_pred CchHHHHHHHHHHHHHccccCC---cHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCC
Confidence 3455666777777777543100 11124557777777777777877777777777664 4467777777777777778
Q ss_pred HHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 035749 111 SNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVS 190 (405)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 190 (405)
+++|...|++.++..+. +..++..+..++...|++++|.+.++...+.. |+..........+...+++++|...+.+
T Consensus 114 ~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 114 FDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 88777777777765333 45566667777777777777777777777653 3222122222233455667777777755
Q ss_pred HHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhC---CC---CCchhhHHHHHHHHHccccHHHHHHHHHHHHHc
Q 035749 191 MESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK---GI---KPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (405)
Q Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (405)
..... +++...+ .+ .....|+...+ ..+..+.+. .+ +.....|..+...+...|++++|...|++..+.
T Consensus 191 ~~~~~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 191 RYEKL-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHhhC-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 44322 2222221 12 22223444333 233333321 00 011235556666666666666666666666655
Q ss_pred C
Q 035749 265 G 265 (405)
Q Consensus 265 ~ 265 (405)
+
T Consensus 266 ~ 266 (296)
T PRK11189 266 N 266 (296)
T ss_pred C
Confidence 4
No 73
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.49 E-value=6e-12 Score=110.30 Aligned_cols=90 Identities=22% Similarity=0.320 Sum_probs=61.6
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 035749 82 LLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGV 161 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (405)
++-.+...|+.|+..+|..+|.-|+..|+++.|- +|.-|.-...+.+...++.++......++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 3445556677777777777777777777777776 7776666656666677777777666666665554
Q ss_pred CCCHHHHHHHHHHHHccCCHHH
Q 035749 162 RPNAFVYNTLMDGFCLTGRVNR 183 (405)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~ 183 (405)
.|...+|..|...|...||...
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH
Confidence 5666777777777777777554
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.49 E-value=1.8e-10 Score=85.47 Aligned_cols=201 Identities=13% Similarity=0.022 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHH
Q 035749 60 AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDE 139 (405)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (405)
..+...|...|...|++..|..-+++.++.. |.+..+|..+...|.+.|+.+.|.+.|++.++..+. +....|.....
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~F 112 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHH
Confidence 3456667777778888888888888877764 456677777777788888888888888877776443 66677777777
Q ss_pred HHcCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHH
Q 035749 140 LCKNGKMEEASQLLELMIQIG-VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEG 218 (405)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (405)
+|..|++++|...|++..... ...-..+|..+.-+..+.|+++.|...|++..+.. +..+.+...+.....+.|++-.
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchH
Confidence 777788888888887777653 22234567777777777788888888887777764 4455566667777777777777
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHc
Q 035749 219 ALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (405)
Q Consensus 219 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (405)
|...++.....+. ++..+....++.--..|+.+.+.++=..+.+.
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 7777777766654 66666666666666777777666665555543
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.48 E-value=1.7e-10 Score=85.62 Aligned_cols=206 Identities=14% Similarity=0.036 Sum_probs=175.3
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHH
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNS 100 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (405)
+...|.-.|.+.|++..|..-++++++.+ |.+..+|..+...|.+.|..+.|.+.|++..+.. |.+..+.|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-------Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNN 108 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-------PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNN 108 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhh
Confidence 45667778999999999999999999987 5678899999999999999999999999999875 667899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 035749 101 VIRGFCYANDSNEAKRLFIEMMDQG-VQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTG 179 (405)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 179 (405)
....+|..|++++|...|++..... ...-..+|..+.-+..+.|+.+.|...|++.++.. +........+.......|
T Consensus 109 YG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~ 187 (250)
T COG3063 109 YGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAG 187 (250)
T ss_pred hhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcc
Confidence 9999999999999999999998753 22235678888889999999999999999999985 555667788899999999
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhH
Q 035749 180 RVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTY 238 (405)
Q Consensus 180 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (405)
++-.|...++.....+ .++..+.-..|+.--..|+.+.+-+.=.++... .|...-+
T Consensus 188 ~y~~Ar~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~ 243 (250)
T COG3063 188 DYAPARLYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEY 243 (250)
T ss_pred cchHHHHHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHH
Confidence 9999999999998877 478888888888888899998888777666664 3444333
No 76
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.48 E-value=1.2e-10 Score=95.76 Aligned_cols=214 Identities=12% Similarity=0.037 Sum_probs=156.0
Q ss_pred hHhHHHHHHhhcC-CCCC--hhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHH
Q 035749 2 EAAALFTKLKAFG-CEPN--VITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDK 78 (405)
Q Consensus 2 ~A~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 78 (405)
.++.-+..++... ..|+ ...|..+...+...|++++|+..|+++++.+ |.++..|+.+...+...|++++
T Consensus 44 ~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-------P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 44 VILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-------PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred HHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHCCCHHH
Confidence 4566666676532 1222 3568888889999999999999999999986 5678999999999999999999
Q ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 035749 79 AKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQ 158 (405)
Q Consensus 79 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 158 (405)
|...|++..+.. |.+..+|..+..++...|++++|.+.|+...+..+. +. ........+...++.++|...+.+...
T Consensus 117 A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 117 AYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 999999999874 446788899999999999999999999999986433 22 222222234556789999999977654
Q ss_pred cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc---CC---CCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 035749 159 IGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESM---GC---KHNVFSYSILINGYCKNKEIEGALSLYSEMLSKG 230 (405)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 230 (405)
.. +++...+ .+ .....|+...+ ..+..+.+. .. +....+|..+...+.+.|++++|+..|++..+.+
T Consensus 194 ~~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 194 KL-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hC-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 42 3332222 22 23345555443 244444321 10 2234678999999999999999999999999874
No 77
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=2.6e-09 Score=84.57 Aligned_cols=351 Identities=13% Similarity=0.095 Sum_probs=207.5
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHH
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAK 80 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (405)
++|+.++..+.+.. .++...+-.+.-.+.-.|.+.+|..+-.++. .++-.-..+.....+.++-++..
T Consensus 74 ~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~-----------k~pL~~RLlfhlahklndEk~~~ 141 (557)
T KOG3785|consen 74 EEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAP-----------KTPLCIRLLFHLAHKLNDEKRIL 141 (557)
T ss_pred HHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCC-----------CChHHHHHHHHHHHHhCcHHHHH
Confidence 47888898888765 6778888889988899999999999887753 33444455555566677777666
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHH-HHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 81 ELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSV-IMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
.+.+.+.+. ..--.+|.......-.+.+|+++|.+.+..+ |+....+. +..+|.+..-++-+.+++.-.++.
T Consensus 142 ~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 142 TFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 666655442 2333344444444556788888888887653 33333333 344566777777777777666654
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh--------------cC------------CCC-----ChhhHHHHHH
Q 035749 160 GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMES--------------MG------------CKH-----NVFSYSILIN 208 (405)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------------~~------------~~~-----~~~~~~~l~~ 208 (405)
++.++...+..+....+.-.-..|..-.+.+.+ .+ +-| -+.+--.|+-
T Consensus 215 -~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~i 293 (557)
T KOG3785|consen 215 -FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLII 293 (557)
T ss_pred -CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhhee
Confidence 233333333333222221111111111111111 00 000 1122233444
Q ss_pred HHhhcCChHHHHHHHHHHHhCCCCCchhh-----------------------------------------HHHHHHHHHc
Q 035749 209 GYCKNKEIEGALSLYSEMLSKGIKPTVVT-----------------------------------------YNTLFIGLFE 247 (405)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----------------------------------------~~~l~~~~~~ 247 (405)
.|.+.++..+|..+..++... .|-... -..+...+.-
T Consensus 294 YyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL 371 (557)
T KOG3785|consen 294 YYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFL 371 (557)
T ss_pred eecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHH
Confidence 556667777776666544221 111111 1222233333
Q ss_pred cccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 035749 248 IHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWEL 327 (405)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 327 (405)
..++++++.++..+..-- ..|......+.++.+..|++.+|+++|-++....++.+..-...++++|.+.+.++.|+++
T Consensus 372 ~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~ 450 (557)
T KOG3785|consen 372 SFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDM 450 (557)
T ss_pred HHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHH
Confidence 445555555555555442 2333344456788888999999999998887655444444556778899999999999999
Q ss_pred HhhccCCCcCccHH-HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 035749 328 FHSLPRGVLIADVV-TYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFN 379 (405)
Q Consensus 328 ~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 379 (405)
+-++... .+.. ....+...|.+.+.+=-|-+.|+.+... .|++..|.
T Consensus 451 ~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe 498 (557)
T KOG3785|consen 451 MLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWE 498 (557)
T ss_pred HHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC
Confidence 8776542 1222 2344456788999999999999888774 67777664
No 78
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.46 E-value=9.8e-09 Score=87.70 Aligned_cols=359 Identities=13% Similarity=0.041 Sum_probs=206.1
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHH
Q 035749 22 YSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSV 101 (405)
Q Consensus 22 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 101 (405)
|..++.. ...+++.+.+++.+.+++.. +...++.....-.+...|+-++|.+......... .-+..+|..+
T Consensus 11 F~~~lk~-yE~kQYkkgLK~~~~iL~k~-------~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~ 81 (700)
T KOG1156|consen 11 FRRALKC-YETKQYKKGLKLIKQILKKF-------PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVL 81 (700)
T ss_pred HHHHHHH-HHHHHHHhHHHHHHHHHHhC-------CccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHH
Confidence 3444443 36677777777777777753 4455666666666666777777777777666543 4466777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 035749 102 IRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181 (405)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 181 (405)
.-.+....++++|++.|......+.. |...+.-+.-.-++.|+++........+.+.. +.....|..++.++.-.|++
T Consensus 82 gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 82 GLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEY 159 (700)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777766433 56666666666666677777666666666552 33344566666666677777
Q ss_pred HHHHHHHHHHHhcC-CCCChhhHHHHH------HHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHH
Q 035749 182 NRAKELFVSMESMG-CKHNVFSYSILI------NGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERA 254 (405)
Q Consensus 182 ~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 254 (405)
..|..+++...+.. -.|+...+.... ....+.|..+.|.+.+...... +.-....-..-...+.+.+++++|
T Consensus 160 ~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA 238 (700)
T KOG1156|consen 160 KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEA 238 (700)
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhH
Confidence 77777777765543 134444433222 2234456666666666554332 111111222334455666677777
Q ss_pred HHHHHHHHHcCCCccHHHH-HHHHHHHhcCCChHHHH-HHHHH----------------------------------HHh
Q 035749 255 FKLFDEMQRHGVAADTWAY-RTFIDGLCKNGYIVEAL-ELFRT----------------------------------LRI 298 (405)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~-~~~~~----------------------------------~~~ 298 (405)
..++..++..+ ||...| ..+..++.+..+..++. .+|.. ..+
T Consensus 239 ~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~ 316 (700)
T KOG1156|consen 239 VKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLS 316 (700)
T ss_pred HHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhh
Confidence 77777666653 333332 22333332222222222 33333 333
Q ss_pred cCCCccHHHHHHHHHHHHhcCCHHHHHHHHhh--------ccCCC----------cCccHHHHH--HHHHHHHcCCCHHH
Q 035749 299 LKCELDIRSYSCLIDGLCKSGRLKIAWELFHS--------LPRGV----------LIADVVTYN--IMIHALCADGKMDK 358 (405)
Q Consensus 299 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--------~~~~~----------~~~~~~~~~--~l~~~~~~~g~~~~ 358 (405)
.|+++- +..+...|- ++.+.- ++++ +...+ -+|....|. .++..+-+.|+++.
T Consensus 317 Kg~p~v---f~dl~SLyk---~p~k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~ 389 (700)
T KOG1156|consen 317 KGVPSV---FKDLRSLYK---DPEKVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEV 389 (700)
T ss_pred cCCCch---hhhhHHHHh---chhHhH-HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHH
Confidence 333221 111211121 111111 2222 11111 145555554 45677889999999
Q ss_pred HHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCchhHHHHHHHHhhh
Q 035749 359 AHDLFLDMEAKGVAPDC-VAFNTLMLGCIRNNETSKVVELLHRMDE 403 (405)
Q Consensus 359 A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 403 (405)
|...++.+.++ .|+. ..|..-.+.+...|+.++|..++++..+
T Consensus 390 A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e 433 (700)
T KOG1156|consen 390 ALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE 433 (700)
T ss_pred HHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Confidence 99999999986 5554 4566667889999999999999998764
No 79
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=1.3e-08 Score=85.97 Aligned_cols=195 Identities=13% Similarity=0.019 Sum_probs=109.5
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHH
Q 035749 23 STLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVI 102 (405)
Q Consensus 23 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 102 (405)
.+=++.+...|++++|.+...+++..+ |.+...+..-+.++++.+++++|+.+.+.-... ..+...+.--+
T Consensus 16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~-------pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKA 86 (652)
T KOG2376|consen 16 LTDLNRHGKNGEYEEAVKTANKILSIV-------PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKA 86 (652)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhcC-------CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHH
Confidence 334556677778888888888877754 455667777777777777787777554432211 11111111223
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC-------------------
Q 035749 103 RGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRP------------------- 163 (405)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------------- 163 (405)
.+..+.+..++|+..++-+-+ .+..+...-...+.+.|++++|..+|+.+.+.+.+.
T Consensus 87 Yc~Yrlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~ 162 (652)
T KOG2376|consen 87 YCEYRLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ 162 (652)
T ss_pred HHHHHcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH
Confidence 344466777777777662211 123355555666677777777777777764432110
Q ss_pred --------CHHHH---HHHHHHHHccCCHHHHHHHHHHHHhcCC------CCC-h-------hhHHHHHHHHhhcCChHH
Q 035749 164 --------NAFVY---NTLMDGFCLTGRVNRAKELFVSMESMGC------KHN-V-------FSYSILINGYCKNKEIEG 218 (405)
Q Consensus 164 --------~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~-~-------~~~~~l~~~~~~~~~~~~ 218 (405)
...+| ......+...|++.+|+++++.....+. ..+ . ..-..+...+-..|+-.+
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 01122 2233455667888888888877722110 001 0 011234445566788888
Q ss_pred HHHHHHHHHhCC
Q 035749 219 ALSLYSEMLSKG 230 (405)
Q Consensus 219 a~~~~~~~~~~~ 230 (405)
|..+|...+...
T Consensus 243 a~~iy~~~i~~~ 254 (652)
T KOG2376|consen 243 ASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHhc
Confidence 888888777653
No 80
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=1e-09 Score=84.70 Aligned_cols=303 Identities=14% Similarity=0.131 Sum_probs=210.6
Q ss_pred CCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 035749 14 GCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINP 93 (405)
Q Consensus 14 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 93 (405)
|+.....-+.+.+..+.+..+++.|++++..-.++. +.+......|..+|....++..|-+.|+++... .|
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-------p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P 75 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-------PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HP 75 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--Ch
Confidence 433344457778888888999999999999988875 457788899999999999999999999999875 45
Q ss_pred ChHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 035749 94 DVVTYNS-VIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLM 172 (405)
Q Consensus 94 ~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 172 (405)
...-|.. -.+.+.+.+.+.+|+++...|.+. ...-......-.......+++..+..++++....| +..+.+...
T Consensus 76 ~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~g 151 (459)
T KOG4340|consen 76 ELEQYRLYQAQSLYKACIYADALRVAFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLG 151 (459)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccch
Confidence 4444443 356677889999999999888653 11111222222233456788888888888775433 455666666
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCC-------------Cchh---
Q 035749 173 DGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIK-------------PTVV--- 236 (405)
Q Consensus 173 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~--- 236 (405)
....+.|+++.|.+-|+...+.+.-.....|+.-+ +..+.++++.|++...+++++|++ ||..
T Consensus 152 CllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvg 230 (459)
T KOG4340|consen 152 CLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVG 230 (459)
T ss_pred heeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhccc
Confidence 77788999999999999988776555566777655 556678999999999998887643 1211
Q ss_pred ------------hHHHHHHHHHccccHHHHHHHHHHHHHc-CCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCc
Q 035749 237 ------------TYNTLFIGLFEIHQVERAFKLFDEMQRH-GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCEL 303 (405)
Q Consensus 237 ------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 303 (405)
.++.-...+.+.++++.|.+.+-.|..+ ....|+.++..+.-.- ..+++....+-+.-+.... |.
T Consensus 231 Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-Pf 308 (459)
T KOG4340|consen 231 NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PF 308 (459)
T ss_pred chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CC
Confidence 1222233456778888888888877533 1234566665544332 2355555555566666654 56
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 035749 304 DIRSYSCLIDGLCKSGRLKIAWELFHSLP 332 (405)
Q Consensus 304 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 332 (405)
...++..++-.|++..-++-|.+++.+-.
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHhhCc
Confidence 67788888889999988998888886543
No 81
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.44 E-value=2.4e-08 Score=85.40 Aligned_cols=371 Identities=10% Similarity=0.115 Sum_probs=186.6
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHH
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYN 99 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 99 (405)
..|...+..+..+|+.......|+.++..-+ +.....+|...+......+-++-++.+|++.++. ++..-+
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLp-----vtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~e 173 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALP-----VTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEARE 173 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCc-----hHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHH
Confidence 3466666667778888888888888776543 3344567777777777777777888888877764 344466
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC------CCccHhhHHHHHHHHHcCCCHHH---HHHHHHHHHHcCCCCCHHHHHH
Q 035749 100 SVIRGFCYANDSNEAKRLFIEMMDQG------VQPNVVTFSVIMDELCKNGKMEE---ASQLLELMIQIGVRPNAFVYNT 170 (405)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~ 170 (405)
-.+..++..+++++|.+.+...+... .+.+-..|..+....++.-+.-. ...+++.+...-...-...|..
T Consensus 174 eyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~S 253 (835)
T KOG2047|consen 174 EYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCS 253 (835)
T ss_pred HHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHH
Confidence 66777777777777777776655321 11122233333332222211111 1111121111100001123344
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH----------------------------------------
Q 035749 171 LMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGY---------------------------------------- 210 (405)
Q Consensus 171 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---------------------------------------- 210 (405)
|..-|.+.|.+++|..+|++.... ..+..-|..+..+|
T Consensus 254 LAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 254 LADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 444444444444444444443322 11111111111111
Q ss_pred --------------------------hhcCChHHHHHHHHHHHhCCCCCc------hhhHHHHHHHHHccccHHHHHHHH
Q 035749 211 --------------------------CKNKEIEGALSLYSEMLSKGIKPT------VVTYNTLFIGLFEIHQVERAFKLF 258 (405)
Q Consensus 211 --------------------------~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~ 258 (405)
+..|+..+....|.++... +.|. ...|..+...|-..|+.+.|..+|
T Consensus 332 rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 332 RRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred ccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 1123444455555555443 2221 123445555666667777777777
Q ss_pred HHHHHcCCCcc---HHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCc-----------------cHHHHHHHHHHHHhc
Q 035749 259 DEMQRHGVAAD---TWAYRTFIDGLCKNGYIVEALELFRTLRILKCEL-----------------DIRSYSCLIDGLCKS 318 (405)
Q Consensus 259 ~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~~~ 318 (405)
++..+...+.- ..++..-...-.+..+++.|+++++.+.....+| +..+|...+..-...
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 76665432211 2334444444455666666776666654321111 122344444444556
Q ss_pred CCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHH---ccCchhHH
Q 035749 319 GRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDC-VAFNTLMLGCI---RNNETSKV 394 (405)
Q Consensus 319 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~---~~g~~~~a 394 (405)
|-++....+++++.+..+. ++.........+-.+.-++++.+++++-+..=..|+. ..|+..+..+. ..-+.+.|
T Consensus 491 gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra 569 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA 569 (835)
T ss_pred ccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 6666666666666654333 2222223333344555667777777666554223333 34555443333 33457888
Q ss_pred HHHHHHhhh
Q 035749 395 VELLHRMDE 403 (405)
Q Consensus 395 ~~~~~~~~~ 403 (405)
+.+|++..+
T Consensus 570 RdLFEqaL~ 578 (835)
T KOG2047|consen 570 RDLFEQALD 578 (835)
T ss_pred HHHHHHHHh
Confidence 888887765
No 82
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.43 E-value=7.4e-09 Score=90.17 Aligned_cols=358 Identities=12% Similarity=0.031 Sum_probs=244.9
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHh-cCChHHHH
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCK-EGFVDKAK 80 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~ 80 (405)
.+.+.|+..... .....+.|+.+.-.+...|.-..|+.+++......+ -+++...+......|.+ .+..++++
T Consensus 341 ~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~-----~ps~~s~~Lmasklc~e~l~~~eegl 414 (799)
T KOG4162|consen 341 VLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSE-----QPSDISVLLMASKLCIERLKLVEEGL 414 (799)
T ss_pred HHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhccccc-----CCCcchHHHHHHHHHHhchhhhhhHH
Confidence 345566666543 244667899999999999999999999998776542 24455556555555654 47777777
Q ss_pred HHHHHHHhC--C--CCCChHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCC
Q 035749 81 ELLLQMKDK--N--INPDVVTYNSVIRGFCYAN-----------DSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGK 145 (405)
Q Consensus 81 ~~~~~~~~~--~--~~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 145 (405)
++-.++... + -...+..|..+.-+|...- ...++++.+++..+.+.. |......+.--|+..++
T Consensus 415 dYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~ 493 (799)
T KOG4162|consen 415 DYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQ 493 (799)
T ss_pred HHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHh
Confidence 777776652 1 1223455655555554321 235777888888876544 44444455667788899
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-C------------------ChhhHHHH
Q 035749 146 MEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCK-H------------------NVFSYSIL 206 (405)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~------------------~~~~~~~l 206 (405)
.+.|.+..++..+.+-..+...|..+.-++...+++.+|+.+.+.....-.. . ...+...+
T Consensus 494 l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~ 573 (799)
T KOG4162|consen 494 LTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHK 573 (799)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHH
Confidence 9999999999999866788899999999999999999999998876543101 0 01111111
Q ss_pred HHHHh-----------------------hcCChHHHHHHHHHHH--------hCC---------CC--Cch------hhH
Q 035749 207 INGYC-----------------------KNKEIEGALSLYSEML--------SKG---------IK--PTV------VTY 238 (405)
Q Consensus 207 ~~~~~-----------------------~~~~~~~a~~~~~~~~--------~~~---------~~--~~~------~~~ 238 (405)
+...- ...+..++.+....+. ..+ +. |+. ..|
T Consensus 574 L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lw 653 (799)
T KOG4162|consen 574 LALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLW 653 (799)
T ss_pred HHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHH
Confidence 11111 0011112222111111 000 01 111 122
Q ss_pred HHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc
Q 035749 239 NTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKS 318 (405)
Q Consensus 239 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (405)
......+...+..++|...+.+..... +.....|......+...|.+++|.+.|......+ |.++....+++.++...
T Consensus 654 llaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 654 LLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHh
Confidence 334455667788888888888877653 5667778888888999999999999999998876 66788899999999999
Q ss_pred CCHHHHHH--HHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 319 GRLKIAWE--LFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 319 ~~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
|+..-|.. ++..+.+.++ .+...|..+...+.+.|+.++|.+.|....+.
T Consensus 732 G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred CCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 99887777 9999988743 48899999999999999999999999998764
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.42 E-value=5.6e-09 Score=89.26 Aligned_cols=201 Identities=13% Similarity=0.078 Sum_probs=114.1
Q ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCccccccc-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHH
Q 035749 19 VITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPD-AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVT 97 (405)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (405)
...|..+...+...|+.+.+.+.+.+..+... ...+ ..........+...|++++|.+.+++..+.. |.+...
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a 79 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALA-----ARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLA 79 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHH
Confidence 34556666666667777777777766665442 1111 2222333445566778888888888777653 334444
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 035749 98 YNSVIRGFCY----ANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMD 173 (405)
Q Consensus 98 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 173 (405)
+.. ...+.. .+....+.+.+.... ...+........+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 80 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~ 156 (355)
T cd05804 80 LKL-HLGAFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAH 156 (355)
T ss_pred HHH-hHHHHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 432 222222 333444444443311 1111122333445556677777777777777777764 445566667777
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCC-CCh--hhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 035749 174 GFCLTGRVNRAKELFVSMESMGCK-HNV--FSYSILINGYCKNKEIEGALSLYSEMLS 228 (405)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (405)
++...|++++|...+++....... ++. ..|..+...+...|++++|..++++...
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 777777777777777776654211 121 2344566677777777777777777654
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.41 E-value=8.4e-09 Score=88.20 Aligned_cols=309 Identities=11% Similarity=0.001 Sum_probs=183.7
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHH
Q 035749 58 PDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNI-NPDV-VTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSV 135 (405)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (405)
.....|..+...+...|+.+.+...+....+... .++. .........+...|++++|.+.+++..+..+. +...+..
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~ 82 (355)
T cd05804 4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL 82 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH
Confidence 4456777777778788888887777777654421 1121 22223344567789999999999998876332 4434332
Q ss_pred ---HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhh
Q 035749 136 ---IMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCK 212 (405)
Q Consensus 136 ---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (405)
........+....+.+.+... ....+........+...+...|++++|...+++..+.. +.+...+..+...+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~ 160 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM 160 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 111122345555565555541 11122233444566678889999999999999998875 5567778888899999
Q ss_pred cCChHHHHHHHHHHHhCCC-CCch--hhHHHHHHHHHccccHHHHHHHHHHHHHcCC-CccHHHH-H--HHHHHHhcCCC
Q 035749 213 NKEIEGALSLYSEMLSKGI-KPTV--VTYNTLFIGLFEIHQVERAFKLFDEMQRHGV-AADTWAY-R--TFIDGLCKNGY 285 (405)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~ 285 (405)
.|++++|...+++...... .|+. ..+..+...+...|++++|..++++...... .+..... . .++..+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 9999999999998877532 1222 2345677788899999999999998864321 1111111 1 22333333443
Q ss_pred hHHHHHH--H-HHHHhc-CCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcC------c--cHHHHHHHHHHHHcC
Q 035749 286 IVEALEL--F-RTLRIL-KCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLI------A--DVVTYNIMIHALCAD 353 (405)
Q Consensus 286 ~~~a~~~--~-~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~--~~~~~~~l~~~~~~~ 353 (405)
...+... + ...... ............+.++...|+.+.|...++.+...... . ..........++...
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 3333222 1 111111 00111122234666777888888888888776542111 0 112222233345578
Q ss_pred CCHHHHHHHHHHHHhC
Q 035749 354 GKMDKAHDLFLDMEAK 369 (405)
Q Consensus 354 g~~~~A~~~~~~~~~~ 369 (405)
|++++|.+.+......
T Consensus 321 g~~~~A~~~L~~al~~ 336 (355)
T cd05804 321 GNYATALELLGPVRDD 336 (355)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8888888888777654
No 85
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=5.2e-08 Score=82.53 Aligned_cols=381 Identities=14% Similarity=0.061 Sum_probs=222.5
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHH
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAK 80 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (405)
++|++....++..+ +.+..++..=+-++.+.++|++|+.+.+.-... ..+...+..-..+..+.+..++|+
T Consensus 29 e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--------~~~~~~~fEKAYc~Yrlnk~Deal 99 (652)
T KOG2376|consen 29 EEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--------LVINSFFFEKAYCEYRLNKLDEAL 99 (652)
T ss_pred HHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--------hhcchhhHHHHHHHHHcccHHHHH
Confidence 46888888888776 566677787888899999999999666543211 111111123345566788899998
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---------------------------ccHhhH
Q 035749 81 ELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQ---------------------------PNVVTF 133 (405)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------------------------~~~~~~ 133 (405)
..++-.- +.+..+...-.+.+.+.|++++|.++|+.+.+.+.+ ....+|
T Consensus 100 k~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~sy 175 (652)
T KOG2376|consen 100 KTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSY 175 (652)
T ss_pred HHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchH
Confidence 8887221 224446666777888899999999999988654311 011233
Q ss_pred HHH---HHHHHcCCCHHHHHHHHHHHHHcC-------CCCC------HH-HHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 035749 134 SVI---MDELCKNGKMEEASQLLELMIQIG-------VRPN------AF-VYNTLMDGFCLTGRVNRAKELFVSMESMGC 196 (405)
Q Consensus 134 ~~l---~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~------~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 196 (405)
..+ .-.+...|++.+|+++++...+.+ -..+ .. +-..+.-.+-..|+..+|..++...+...
T Consensus 176 el~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~- 254 (652)
T KOG2376|consen 176 ELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN- 254 (652)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-
Confidence 333 334567899999999999883321 0111 11 12234556778899999999999998875
Q ss_pred CCChhh----HHHHHHHHhhcCChH-HHHHHHH----------------------------------------HHHhC--
Q 035749 197 KHNVFS----YSILINGYCKNKEIE-GALSLYS----------------------------------------EMLSK-- 229 (405)
Q Consensus 197 ~~~~~~----~~~l~~~~~~~~~~~-~a~~~~~----------------------------------------~~~~~-- 229 (405)
++|... -|.++.+-....-++ .++..++ +....
T Consensus 255 ~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp 334 (652)
T KOG2376|consen 255 PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLP 334 (652)
T ss_pred CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC
Confidence 333322 122221111000000 0000000 00000
Q ss_pred CCCCchhhHHHHHHHHH--ccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHH--------HHHhc
Q 035749 230 GIKPTVVTYNTLFIGLF--EIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFR--------TLRIL 299 (405)
Q Consensus 230 ~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~ 299 (405)
+..|.. .+..++..+. +...+.++..++...-+....-...+.-..+......|+++.|.+++. .+.+.
T Consensus 335 ~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~ 413 (652)
T KOG2376|consen 335 GMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA 413 (652)
T ss_pred ccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh
Confidence 112222 2333333222 222466777777776665322224455666777888999999999998 44444
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCC------CcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 035749 300 KCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRG------VLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAP 373 (405)
Q Consensus 300 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 373 (405)
+. .+.+...+...+.+.++-+.|..++...... +...-...+..++..-.+.|+-++|..+++++.+. .++
T Consensus 414 ~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~ 490 (652)
T KOG2376|consen 414 KH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPN 490 (652)
T ss_pred cc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCc
Confidence 33 3345555666677777766666666554321 01111223334444445779999999999999986 466
Q ss_pred CHHHHHHHHHHHHccCchhHHHHHHHH
Q 035749 374 DCVAFNTLMLGCIRNNETSKVVELLHR 400 (405)
Q Consensus 374 ~~~~~~~l~~~~~~~g~~~~a~~~~~~ 400 (405)
|..+...++.+|++.. .+.|..+-+.
T Consensus 491 d~~~l~~lV~a~~~~d-~eka~~l~k~ 516 (652)
T KOG2376|consen 491 DTDLLVQLVTAYARLD-PEKAESLSKK 516 (652)
T ss_pred hHHHHHHHHHHHHhcC-HHHHHHHhhc
Confidence 8888888888887653 5555554433
No 86
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=7.7e-09 Score=86.43 Aligned_cols=106 Identities=18% Similarity=0.120 Sum_probs=86.8
Q ss_pred HHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 035749 26 INGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGF 105 (405)
Q Consensus 26 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 105 (405)
..+.+..|+++.|+..|.+++... |++...|..-..+|...|++++|++--.+-++.+ |.-+..|.....++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-------p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~ 80 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-------PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAAL 80 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-------CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHH
Confidence 456778999999999999999886 5688899999999999999999998877777764 44477899999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHH
Q 035749 106 CYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDEL 140 (405)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (405)
.-.|++++|+..|.+-++.... +...++.+..++
T Consensus 81 ~~lg~~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 81 FGLGDYEEAILAYSEGLEKDPS-NKQLKTGLAQAY 114 (539)
T ss_pred HhcccHHHHHHHHHHHhhcCCc-hHHHHHhHHHhh
Confidence 9999999999999998876433 555666666655
No 87
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.38 E-value=2.5e-08 Score=96.24 Aligned_cols=337 Identities=12% Similarity=0.006 Sum_probs=215.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------Ccc--HhhHHHHHH
Q 035749 67 IDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGV------QPN--VVTFSVIMD 138 (405)
Q Consensus 67 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~ 138 (405)
.......|+++.+..+++.+.......++.........+...|+++++..++......-. .+. ......+..
T Consensus 381 a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~ 460 (903)
T PRK04841 381 GWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQ 460 (903)
T ss_pred HHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHH
Confidence 344556678887777776653221112233334455566788999999999988754311 111 122223344
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHhcCC---CC--ChhhHHHHHHH
Q 035749 139 ELCKNGKMEEASQLLELMIQIGVRPNA----FVYNTLMDGFCLTGRVNRAKELFVSMESMGC---KH--NVFSYSILING 209 (405)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~ 209 (405)
.+...|++++|...++...+.....+. ...+.+...+...|++++|...+++...... .+ ...+...+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 566889999999999998764211121 2345566677889999999999988764311 11 12345566778
Q ss_pred HhhcCChHHHHHHHHHHHhC----CCC--C-chhhHHHHHHHHHccccHHHHHHHHHHHHHcC--CCc--cHHHHHHHHH
Q 035749 210 YCKNKEIEGALSLYSEMLSK----GIK--P-TVVTYNTLFIGLFEIHQVERAFKLFDEMQRHG--VAA--DTWAYRTFID 278 (405)
Q Consensus 210 ~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~ 278 (405)
+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 88999999999998887652 211 1 12234455566777899999999998876431 111 2334444566
Q ss_pred HHhcCCChHHHHHHHHHHHhcCC--CccHH--H--HHHHHHHHHhcCCHHHHHHHHhhccCCCcCcc---HHHHHHHHHH
Q 035749 279 GLCKNGYIVEALELFRTLRILKC--ELDIR--S--YSCLIDGLCKSGRLKIAWELFHSLPRGVLIAD---VVTYNIMIHA 349 (405)
Q Consensus 279 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~--~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 349 (405)
.+...|+++.|...+..+..... ..... . ....+..+...|+.+.|...+........... ...+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 77889999999999988754311 11111 1 01122445568999999999877654221111 1124566778
Q ss_pred HHcCCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHccCchhHHHHHHHHhhh
Q 035749 350 LCADGKMDKAHDLFLDMEAK----GVAPD-CVAFNTLMLGCIRNNETSKVVELLHRMDE 403 (405)
Q Consensus 350 ~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 403 (405)
+...|++++|...++++... |..++ ..+...+..++.+.|+.++|...+.+..+
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88999999999999988753 32222 24566677889999999999999988764
No 88
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.38 E-value=1.9e-08 Score=79.49 Aligned_cols=303 Identities=11% Similarity=0.071 Sum_probs=197.0
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHH
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVT 97 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (405)
++.-..-+...+..+|++..|+.-|..+++.+ |.+-.++..-...|...|+...|+.-+.+.++. +||-..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-------p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ 107 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-------PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMA 107 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-------chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHH
Confidence 44445567788888999999999999998765 344455666667788888888888888888875 565432
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc--Hh------------hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC
Q 035749 98 -YNSVIRGFCYANDSNEAKRLFIEMMDQGVQPN--VV------------TFSVIMDELCKNGKMEEASQLLELMIQIGVR 162 (405)
Q Consensus 98 -~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 162 (405)
-..-...+.+.|.+++|..-|+..++.....+ .. .....+..+...|+...|+.....+++.. +
T Consensus 108 ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~ 186 (504)
T KOG0624|consen 108 ARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-P 186 (504)
T ss_pred HHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-c
Confidence 22234457788999999999999887643211 11 11223445566788888888888888774 6
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhh----H
Q 035749 163 PNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVT----Y 238 (405)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~ 238 (405)
.|...+..-..+|...|++..|+.-++...+.. ..+..++.-+-..+...|+.+.++...++.++. .||... |
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~Y 263 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFY 263 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHH
Confidence 677788888888888888888888777776654 345556666677778888888888888887765 344322 1
Q ss_pred HHH---H------HHHHccccHHHHHHHHHHHHHcCCCc---cHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHH
Q 035749 239 NTL---F------IGLFEIHQVERAFKLFDEMQRHGVAA---DTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIR 306 (405)
Q Consensus 239 ~~l---~------~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 306 (405)
..+ . ....+.++|.+++...+...+..... ....+..+-.++...+++.+|++.-.+++... +.|..
T Consensus 264 KklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~ 342 (504)
T KOG0624|consen 264 KKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQ 342 (504)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHH
Confidence 111 1 11233445555555555555442110 11223344455555666777776666666553 34466
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhccCC
Q 035749 307 SYSCLIDGLCKSGRLKIAWELFHSLPRG 334 (405)
Q Consensus 307 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 334 (405)
++..-+.+|.-...++.|+.-|+...+.
T Consensus 343 ~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 343 VLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 6666666777666777777777666654
No 89
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=2.4e-08 Score=83.57 Aligned_cols=371 Identities=15% Similarity=0.063 Sum_probs=216.5
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHH
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAK 80 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (405)
+.|+..|-+..... |+|-..|..-..+|...|++++|++=-.+.++.. |.-+..|.....++.-.|++++|+
T Consensus 19 ~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-------p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 19 ETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-------PDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred HHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-------CchhhHHHHhHHHHHhcccHHHHH
Confidence 35788888888876 5577889999999999999999999888888765 445778999999999999999999
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHH---HHHHHHHHC---CCCccHhhHHHHHHHHHc----------CC
Q 035749 81 ELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAK---RLFIEMMDQ---GVQPNVVTFSVIMDELCK----------NG 144 (405)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~---~~~~~~~~~~~l~~~~~~----------~~ 144 (405)
..|.+-++.. +.+...+..+..++.......+.. .++..+... ........|..++..+-+ ..
T Consensus 91 ~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~ 169 (539)
T KOG0548|consen 91 LAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDP 169 (539)
T ss_pred HHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccH
Confidence 9999988764 556666777766652110000000 001110000 000001111122111110 00
Q ss_pred CHHHHHHHHHHH-----HHc-------CCCC----------------------CHHHHHHHHHHHHccCCHHHHHHHHHH
Q 035749 145 KMEEASQLLELM-----IQI-------GVRP----------------------NAFVYNTLMDGFCLTGRVNRAKELFVS 190 (405)
Q Consensus 145 ~~~~a~~~~~~~-----~~~-------~~~~----------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~ 190 (405)
.+..+...+... ... +..| -..-...+.+...+..+++.+.+.+..
T Consensus 170 r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~ 249 (539)
T KOG0548|consen 170 RLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAK 249 (539)
T ss_pred HHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 011111111000 000 0000 011234456666666667777777766
Q ss_pred HHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchh-------hHHHHHHHHHccccHHHHHHHHHHHHH
Q 035749 191 MESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVV-------TYNTLFIGLFEIHQVERAFKLFDEMQR 263 (405)
Q Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~ 263 (405)
..... .+..-++....+|...|.+......-.+..+.|-. ... .+..+..++.+.++++.+...|.+.+.
T Consensus 250 a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLt 326 (539)
T KOG0548|consen 250 ALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALT 326 (539)
T ss_pred HHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhh
Confidence 66553 34444455555666666665555555554443311 111 112233344455566666666665543
Q ss_pred cCCCccHH-------------------------HHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc
Q 035749 264 HGVAADTW-------------------------AYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKS 318 (405)
Q Consensus 264 ~~~~~~~~-------------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (405)
....|+.. -...-...+.+.|++..|...|.+++... |.|...|...+-+|.+.
T Consensus 327 e~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL 405 (539)
T KOG0548|consen 327 EHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKL 405 (539)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHH
Confidence 32222211 11122445667788999999998888876 77888888888889999
Q ss_pred CCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 035749 319 GRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIR 387 (405)
Q Consensus 319 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 387 (405)
|.+..|+.-.+...+.. ++....|..-+.++....+|+.|.+.|++.++. .|+..-+...+.-|..
T Consensus 406 ~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 406 GEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred hhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHH
Confidence 99888888877777652 234556666666777778889999999888885 4555444444444443
No 90
>PF13041 PPR_2: PPR repeat family
Probab=99.34 E-value=4.5e-12 Score=72.96 Aligned_cols=50 Identities=40% Similarity=0.790 Sum_probs=44.6
Q ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 035749 338 ADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIR 387 (405)
Q Consensus 338 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 387 (405)
||..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999988864
No 91
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.32 E-value=2.6e-10 Score=92.27 Aligned_cols=251 Identities=12% Similarity=0.039 Sum_probs=145.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 035749 103 RGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVN 182 (405)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 182 (405)
+-+.-.|++..++.-.+ ......+.+......+.+++...|+++.++ ..+.... +|.......+...+...++.+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34455677777775555 222222223444556677777777766543 3333333 556566555555444434455
Q ss_pred HHHHHHHHHHhcCCC-CChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHH
Q 035749 183 RAKELFVSMESMGCK-HNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEM 261 (405)
Q Consensus 183 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 261 (405)
.+..-++........ .+..........+...|++++|++++... .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555544443333222 22233333345566678888887777542 24555566677778888888888888887
Q ss_pred HHcCCCccHHHHHHHHHHHhc----CCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcC
Q 035749 262 QRHGVAADTWAYRTFIDGLCK----NGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLI 337 (405)
Q Consensus 262 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 337 (405)
.+.+ +..+...+..++.. ...+.+|..+|+++... .++++.+.+.++.++...|++++|.+++.+..+...
T Consensus 158 ~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~- 232 (290)
T PF04733_consen 158 QQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP- 232 (290)
T ss_dssp HCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-
T ss_pred HhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-
Confidence 7642 22344444444432 23577888888887654 356777778888888888888888888887766533
Q ss_pred ccHHHHHHHHHHHHcCCCH-HHHHHHHHHHHhC
Q 035749 338 ADVVTYNIMIHALCADGKM-DKAHDLFLDMEAK 369 (405)
Q Consensus 338 ~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~ 369 (405)
-++.+...++.+....|+. +.+.+.+.++...
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 3566777777777777776 5566777777653
No 92
>PF13041 PPR_2: PPR repeat family
Probab=99.31 E-value=8.5e-12 Score=71.81 Aligned_cols=49 Identities=45% Similarity=0.948 Sum_probs=25.0
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHH
Q 035749 93 PDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELC 141 (405)
Q Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (405)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3445555555555555555555555555555555555555555555443
No 93
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=2.2e-09 Score=90.36 Aligned_cols=226 Identities=14% Similarity=0.111 Sum_probs=165.0
Q ss_pred HHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 035749 25 LINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRG 104 (405)
Q Consensus 25 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (405)
....+.++|++.+|.-.|+.+++.+ |.+...|..|.......++-..|+..+++..+.. |.+......|.-.
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqd-------P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVS 362 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQD-------PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVS 362 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhC-------hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHH
Confidence 3445678999999999999998886 6678899999999999999999999999998875 5578888888899
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCc--------cHhhHHHHHHHHHcCCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHH
Q 035749 105 FCYANDSNEAKRLFIEMMDQGVQP--------NVVTFSVIMDELCKNGKMEEASQLLELM-IQIGVRPNAFVYNTLMDGF 175 (405)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~ 175 (405)
|...|.-..|.++++..+...++- +...-.. ........+....++|-.+ .+.+..+|+.+...|.-.|
T Consensus 363 ytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy 440 (579)
T KOG1125|consen 363 YTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLY 440 (579)
T ss_pred HhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHH
Confidence 999999999999998887653210 0000000 0111112233444444443 4444457777888888888
Q ss_pred HccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCch-hhHHHHHHHHHccccHHHH
Q 035749 176 CLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTV-VTYNTLFIGLFEIHQVERA 254 (405)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a 254 (405)
.-.|++++|..+|+.+.... |.|...||.|.-.+....+..+|+..|.+.++. .|.. .....|..+|...|.+++|
T Consensus 441 ~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA 517 (579)
T KOG1125|consen 441 NLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEA 517 (579)
T ss_pred hcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHH
Confidence 88888888888888888775 567778888888888888888888888888875 4443 3455677788888888888
Q ss_pred HHHHHHHHH
Q 035749 255 FKLFDEMQR 263 (405)
Q Consensus 255 ~~~~~~~~~ 263 (405)
...|-.++.
T Consensus 518 ~~hlL~AL~ 526 (579)
T KOG1125|consen 518 VKHLLEALS 526 (579)
T ss_pred HHHHHHHHH
Confidence 888776553
No 94
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=2.3e-08 Score=77.52 Aligned_cols=312 Identities=15% Similarity=0.126 Sum_probs=203.5
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHH-HHHHHHHhcCChHHHH
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYT-TIIDGLCKEGFVDKAK 80 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~ 80 (405)
+|++++..-.+.. +.+......+..+|.+..++..|-..++++-... |...-|. .-.+.+.+.+.+..|+
T Consensus 28 DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--------P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 28 DAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--------PELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--------hHHHHHHHHHHHHHHHhcccHHHH
Confidence 4666666665553 3367778899999999999999999999998764 4333333 3456777889999999
Q ss_pred HHHHHHHhCCCCCChHHHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 035749 81 ELLLQMKDKNINPDVVTYNSVIR--GFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQ 158 (405)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 158 (405)
.+...|.+. ++...-..-+. .....+++..+..+.++....| +..+.+...-...+.|+++.|.+-|+...+
T Consensus 99 rV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlq 172 (459)
T KOG4340|consen 99 RVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQ 172 (459)
T ss_pred HHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHh
Confidence 999887653 22222111222 2335678888888888775432 445555555566789999999999999888
Q ss_pred cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC-------------Ch---------------hhHHHHHHHH
Q 035749 159 IGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKH-------------NV---------------FSYSILINGY 210 (405)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~---------------~~~~~l~~~~ 210 (405)
-+.-.....|+ +.-+..+.++++.|++...++.+.|++. |+ ..+|.-...+
T Consensus 173 vsGyqpllAYn-iALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIe 251 (459)
T KOG4340|consen 173 VSGYQPLLAYN-LALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIE 251 (459)
T ss_pred hcCCCchhHHH-HHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhh
Confidence 75344445555 4446678899999999999988765422 11 1233333445
Q ss_pred hhcCChHHHHHHHHHHHhC-CCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHH
Q 035749 211 CKNKEIEGALSLYSEMLSK-GIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEA 289 (405)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 289 (405)
.+.++++.|.+.+..|..+ ....|+.|...+.-.- ..+++.....-+.-+...+ |....++..++-.|+++.-++.|
T Consensus 252 yq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lA 329 (459)
T KOG4340|consen 252 YQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLA 329 (459)
T ss_pred hhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHH
Confidence 6788999998888887543 2234666666554322 2344555555566666654 45677899999999999999999
Q ss_pred HHHHHHHHhcCCC-ccHHHHHHHHHHHH-hcCCHHHHHHHHhhcc
Q 035749 290 LELFRTLRILKCE-LDIRSYSCLIDGLC-KSGRLKIAWELFHSLP 332 (405)
Q Consensus 290 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~ 332 (405)
-+++.+-...... .+...|+ ++.++. ..-.+++|.+-+..+.
T Consensus 330 ADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 330 ADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 8887653322111 2233333 344443 3345777776665543
No 95
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.29 E-value=1.4e-09 Score=88.10 Aligned_cols=252 Identities=14% Similarity=0.109 Sum_probs=137.4
Q ss_pred HHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 035749 26 INGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGF 105 (405)
Q Consensus 26 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 105 (405)
++-+.-.|++..++.-.+ ..... ..........+.+++...|+++.++ .++.... +|.......+...+
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~------~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~ 76 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFS------PENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYL 76 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTST------CHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCC------chhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHH
Confidence 455667788888876665 22222 1233455666777777788766543 3443333 55666665565555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC-ccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 035749 106 CYANDSNEAKRLFIEMMDQGVQ-PNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRA 184 (405)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 184 (405)
...++-+.++.-+++....... .+..........+...|++++|++++... .+.......+.++.+.++++.|
T Consensus 77 ~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA 150 (290)
T PF04733_consen 77 SSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLA 150 (290)
T ss_dssp CTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHH
T ss_pred hCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHH
Confidence 4434455555544444333222 22233333344556677777777766532 2445555666777777777777
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHH----HhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHH
Q 035749 185 KELFVSMESMGCKHNVFSYSILING----YCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDE 260 (405)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 260 (405)
.+.++.|.+.+ .|. +...+..+ +.....+.+|..+|+++... ..+++.+.+.+..++...|++++|..++.+
T Consensus 151 ~k~l~~~~~~~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~ 226 (290)
T PF04733_consen 151 EKELKNMQQID--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEE 226 (290)
T ss_dssp HHHHHHHHCCS--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHhcC--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 77777776652 232 22222222 22234567777777776554 345666666666677777777777777777
Q ss_pred HHHcCCCccHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhc
Q 035749 261 MQRHGVAADTWAYRTFIDGLCKNGYI-VEALELFRTLRIL 299 (405)
Q Consensus 261 ~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 299 (405)
....+ +-++.++..++.+....|+. +.+.+.+.++...
T Consensus 227 al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 227 ALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 66544 44555666666665556655 5555666665544
No 96
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=1.2e-09 Score=91.84 Aligned_cols=254 Identities=16% Similarity=0.062 Sum_probs=193.6
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCCh
Q 035749 137 MDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEI 216 (405)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 216 (405)
..-+.+.|++.+|.-.|+..++.+ |-+...|..|.......++-..|+..++++.+.. +.+..+...|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 344567899999999999998886 6678899999999999999999999999999886 66788888899999999999
Q ss_pred HHHHHHHHHHHhCCCCC--------chhhHHHHHHHHHccccHHHHHHHHHHHH-HcCCCccHHHHHHHHHHHhcCCChH
Q 035749 217 EGALSLYSEMLSKGIKP--------TVVTYNTLFIGLFEIHQVERAFKLFDEMQ-RHGVAADTWAYRTFIDGLCKNGYIV 287 (405)
Q Consensus 217 ~~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~ 287 (405)
..|++.+++.+...++- +...-.. ..+..........++|-++. ..+..+|+.+...|.-.|.-.|+++
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 99999999987653110 0000000 12222233445555555554 4444478888999999999999999
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCcc-HHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 035749 288 EALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIAD-VVTYNIMIHALCADGKMDKAHDLFLDM 366 (405)
Q Consensus 288 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 366 (405)
+|.+.|+.++... |-|..+|+.|+..+....+.++|+..|+++.+. .|. +.+...|..+|+..|.+.+|.+.|-.+
T Consensus 448 raiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 448 RAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 9999999999876 678899999999999999999999999999884 554 566777888999999999999998877
Q ss_pred HhC---------CCCCCHHHHHHHHHHHHccCchhHHHHH
Q 035749 367 EAK---------GVAPDCVAFNTLMLGCIRNNETSKVVEL 397 (405)
Q Consensus 367 ~~~---------~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 397 (405)
+.. +..++..+|..|=.++...++.+-+.+.
T Consensus 525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 642 1122345777777777777777644443
No 97
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.27 E-value=2.1e-07 Score=73.78 Aligned_cols=305 Identities=12% Similarity=0.035 Sum_probs=208.6
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhh-HHH
Q 035749 57 KPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVT-FSV 135 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ 135 (405)
+.+..-...+...+...|++..|+.-|....+.+ |.+-.++-.-...|...|+...|+.-+...++. +||-.. -..
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQ 111 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHH
Confidence 4456666778888888999999999999988753 223334444456788889999999888888875 555332 223
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCC--HH------------HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChh
Q 035749 136 IMDELCKNGKMEEASQLLELMIQIGVRPN--AF------------VYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVF 201 (405)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 201 (405)
-...+.+.|.+++|..-|+.+++...... .. .....+..+...|+...|+.....+.+.. +.+..
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~ 190 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDAS 190 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhH
Confidence 34567899999999999999988742111 11 11223445667788888888888888775 66777
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHH------
Q 035749 202 SYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRT------ 275 (405)
Q Consensus 202 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------ 275 (405)
.+..-..+|...|++..|+.=++...+.. .-+..++..+-..+...|+.+.++...++.++. .||......
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklk 267 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLK 267 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHH
Confidence 88888888888888888888777766543 224455556677788888888888888888775 355432211
Q ss_pred -HH------HHHhcCCChHHHHHHHHHHHhcCCC---ccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHH
Q 035749 276 -FI------DGLCKNGYIVEALELFRTLRILKCE---LDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNI 345 (405)
Q Consensus 276 -l~------~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 345 (405)
+. ......++|.++++-.+...+.... .....+..+-.++...|++.+|++...++.+. .+.|+.++.-
T Consensus 268 Kv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~-d~~dv~~l~d 346 (504)
T KOG0624|consen 268 KVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI-DPDDVQVLCD 346 (504)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc-CchHHHHHHH
Confidence 11 1233456677777776666654321 11223445556677778888888888877764 1224777777
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 346 MIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 346 l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
-..+|.-...++.|+.-|+.+.+.
T Consensus 347 RAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 347 RAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhc
Confidence 778888888888888888888875
No 98
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.26 E-value=5.4e-07 Score=75.85 Aligned_cols=375 Identities=10% Similarity=0.089 Sum_probs=222.8
Q ss_pred CCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 035749 16 EPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDV 95 (405)
Q Consensus 16 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 95 (405)
|-|..+|..||+-+..+ .++++.+.++++... +|..+..|..-|......++++....+|.+.... ..+.
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-------FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnl 86 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-------FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNL 86 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-------CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhH
Confidence 67889999999988666 999999999999876 4677889999999999999999999999998765 3456
Q ss_pred HHHHHHHHHHHhc-CCHHH----HHHHHHHHHH-CCCCc-cHhhHHHHHHH---------HHcCCCHHHHHHHHHHHHHc
Q 035749 96 VTYNSVIRGFCYA-NDSNE----AKRLFIEMMD-QGVQP-NVVTFSVIMDE---------LCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 96 ~~~~~l~~~~~~~-~~~~~----a~~~~~~~~~-~~~~~-~~~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~ 159 (405)
..|...+..-.+. |+... ..+.|+-.+. .|+.+ +...|+..+.. +....+++...+++++++..
T Consensus 87 DLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 87 DLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred hHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 7777666643332 22222 2223333222 23222 22233333322 33445677777777776654
Q ss_pred CCCCCHHHHHH------HHHH-------HHccCCHHHHHHHHHHHHhc--CC-------CCC--------hhhHHHHHH-
Q 035749 160 GVRPNAFVYNT------LMDG-------FCLTGRVNRAKELFVSMESM--GC-------KHN--------VFSYSILIN- 208 (405)
Q Consensus 160 ~~~~~~~~~~~------l~~~-------~~~~~~~~~a~~~~~~~~~~--~~-------~~~--------~~~~~~l~~- 208 (405)
.+..-...|+- -++. -.+...+..|.++++++... |. +|. ...|..+|.
T Consensus 167 Pm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w 246 (656)
T KOG1914|consen 167 PMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW 246 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH
Confidence 22111111111 1110 11223355555555544321 11 000 000111111
Q ss_pred ------------------------------------------------HHhhcCC-------hHHHHHHHHHHHhCCCCC
Q 035749 209 ------------------------------------------------GYCKNKE-------IEGALSLYSEMLSKGIKP 233 (405)
Q Consensus 209 ------------------------------------------------~~~~~~~-------~~~a~~~~~~~~~~~~~~ 233 (405)
.+...|+ -+++..+++..+..-...
T Consensus 247 EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~ 326 (656)
T KOG1914|consen 247 EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE 326 (656)
T ss_pred HhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 1111122 233444444433321111
Q ss_pred chhhHHHHHHHHH---ccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCc-cHHHHH
Q 035749 234 TVVTYNTLFIGLF---EIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCEL-DIRSYS 309 (405)
Q Consensus 234 ~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~ 309 (405)
+..+|..+...-- ..+..+.....+.+++..-...-.-++...+....+..-+..|+.+|.++.+.+..+ ++.+..
T Consensus 327 ~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~ 406 (656)
T KOG1914|consen 327 NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAA 406 (656)
T ss_pred HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHH
Confidence 2222222221111 111255556666666543222223466777777778888999999999998887666 666677
Q ss_pred HHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHc
Q 035749 310 CLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPD--CVAFNTLMLGCIR 387 (405)
Q Consensus 310 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~ 387 (405)
+++..|+ .++..-|.++|+-=.+. ...++..-...+..+...++-..|..+|++.+..++.|+ ..+|..++.--..
T Consensus 407 A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~ 484 (656)
T KOG1914|consen 407 ALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESN 484 (656)
T ss_pred HHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHh
Confidence 7777655 67889999999875543 222444445667777888999999999999998866654 4689999988889
Q ss_pred cCchhHHHHHHHHhh
Q 035749 388 NNETSKVVELLHRMD 402 (405)
Q Consensus 388 ~g~~~~a~~~~~~~~ 402 (405)
-|+...+.++-+++.
T Consensus 485 vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 485 VGDLNSILKLEKRRF 499 (656)
T ss_pred cccHHHHHHHHHHHH
Confidence 999999998887764
No 99
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.18 E-value=1.6e-08 Score=87.60 Aligned_cols=222 Identities=17% Similarity=0.103 Sum_probs=166.5
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHH
Q 035749 161 VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNT 240 (405)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (405)
.+|-...-..+...+...|-...|..+++++.. |..++.+|...|+..+|..+..+-.++ +|++..|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 344445556677788888888888888887653 455677888888888888888887774 678888888
Q ss_pred HHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC
Q 035749 241 LFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGR 320 (405)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 320 (405)
++.......-+++|.++.+..... .-..+.....+.++++++.+.|+...+.. +....+|..+..+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 887777777778888877755432 11222223344688888888888877765 6677788888888888888
Q ss_pred HHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHH
Q 035749 321 LKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHR 400 (405)
Q Consensus 321 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 400 (405)
++.|.+.|.....-. +.+...||++-.+|.+.|+-.+|...++++.+.+ ..+...|...+....+.|.+++|.+.+++
T Consensus 535 ~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 888888888776642 2256788888888888888888888888888876 44666777777778888888888888888
Q ss_pred hhh
Q 035749 401 MDE 403 (405)
Q Consensus 401 ~~~ 403 (405)
+.+
T Consensus 613 ll~ 615 (777)
T KOG1128|consen 613 LLD 615 (777)
T ss_pred HHH
Confidence 754
No 100
>PLN02789 farnesyltranstransferase
Probab=99.17 E-value=3.2e-07 Score=75.47 Aligned_cols=215 Identities=13% Similarity=0.039 Sum_probs=145.1
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCChHHHH
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEG-FVDKAKELLLQMKDKNINPDVVTYN 99 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~ 99 (405)
++..+-..+...++.++|+.+.+++++.+ |.+..+|+....++...| ++++++..++++.+.+ +-+..+|+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-------P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~ 110 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-------PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWH 110 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-------chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhH
Confidence 34555566677788899999999998875 455667777777777777 5789999999888775 44666777
Q ss_pred HHHHHHHhcCCH--HHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 035749 100 SVIRGFCYANDS--NEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCL 177 (405)
Q Consensus 100 ~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (405)
.....+.+.|.. ++++..++++++...+ +..+|.....++...|+++++++.++++++.+ +.+...|+.....+.+
T Consensus 111 ~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~ 188 (320)
T PLN02789 111 HRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITR 188 (320)
T ss_pred HHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHh
Confidence 665555566653 6778888888877554 78888888888888888999999999988876 4566666665555444
Q ss_pred c---CC----HHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhc----CChHHHHHHHHHHHhCCCCCchhhHHHHHHHHH
Q 035749 178 T---GR----VNRAKELFVSMESMGCKHNVFSYSILINGYCKN----KEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLF 246 (405)
Q Consensus 178 ~---~~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 246 (405)
. |. .++.+.+..+++... |.+..+|+-+...+... +...+|.+.+.+....+ +.+......++..|.
T Consensus 189 ~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~ 266 (320)
T PLN02789 189 SPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLC 266 (320)
T ss_pred ccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHH
Confidence 3 22 245666665666554 55667777766666652 23345666666655532 224445555555554
Q ss_pred c
Q 035749 247 E 247 (405)
Q Consensus 247 ~ 247 (405)
.
T Consensus 267 ~ 267 (320)
T PLN02789 267 E 267 (320)
T ss_pred h
Confidence 3
No 101
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.17 E-value=5.7e-07 Score=87.04 Aligned_cols=306 Identities=11% Similarity=-0.008 Sum_probs=199.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCC------CCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccH----h
Q 035749 64 TTIIDGLCKEGFVDKAKELLLQMKDKNI------NPD--VVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNV----V 131 (405)
Q Consensus 64 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~ 131 (405)
......+...|+++++..++......-- .+. ......+...+...|++++|...+++....-...+. .
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 3444555678999999999987754310 111 122233445566889999999999998763111121 2
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHhc----CCCC---C
Q 035749 132 TFSVIMDELCKNGKMEEASQLLELMIQIGV---RP--NAFVYNTLMDGFCLTGRVNRAKELFVSMESM----GCKH---N 199 (405)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~---~ 199 (405)
....+...+...|++++|...+++...... .+ .......+...+...|++++|...+++.... +... .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 345566677889999999999988765321 11 1234556677888999999999998887543 2111 1
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHhC--CCCC--chhhHHHHHHHHHccccHHHHHHHHHHHHHcC--CCccHHH-
Q 035749 200 VFSYSILINGYCKNKEIEGALSLYSEMLSK--GIKP--TVVTYNTLFIGLFEIHQVERAFKLFDEMQRHG--VAADTWA- 272 (405)
Q Consensus 200 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~- 272 (405)
...+..+...+...|++++|...+.+.... ...+ ....+..+...+...|+++.|...+....... .......
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 233445666777889999999999887653 1112 23344455667788999999999998875421 1111111
Q ss_pred ---HHHHHHHHhcCCChHHHHHHHHHHHhcCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHhhccCC----CcCc-cHH
Q 035749 273 ---YRTFIDGLCKNGYIVEALELFRTLRILKCELD---IRSYSCLIDGLCKSGRLKIAWELFHSLPRG----VLIA-DVV 341 (405)
Q Consensus 273 ---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~ 341 (405)
....+..+...|+.+.|...+........... ......+..++...|++++|...+++.... +..+ ...
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 01122444567899999999877654221111 112456777889999999999999887542 2221 234
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 342 TYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 342 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
+...+..++...|+.++|...+.++.+.
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5667778889999999999999999876
No 102
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.14 E-value=3e-08 Score=86.05 Aligned_cols=221 Identities=11% Similarity=0.072 Sum_probs=182.6
Q ss_pred ccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 035749 128 PNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILI 207 (405)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 207 (405)
|-...-..+...+.+.|-...|..+++++. .|...+.+|...|+..+|..+..+..+. +|++..|..++
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 333344567778888999999999998764 4667888999999999999999988874 78999999999
Q ss_pred HHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChH
Q 035749 208 NGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIV 287 (405)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 287 (405)
.......-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +....++.....+..+.++++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhH
Confidence 8887777788888888775442 22223333445789999999999888765 567788888888999999999
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 035749 288 EALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDME 367 (405)
Q Consensus 288 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 367 (405)
.|.+.|....... |.+...|+.+..+|.+.++-.+|...+++..+.+ .-+...|.+.+....+.|.+++|++.+.++.
T Consensus 537 ~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 537 AAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 9999999998765 6677899999999999999999999999998876 4477788889999999999999999999987
Q ss_pred hC
Q 035749 368 AK 369 (405)
Q Consensus 368 ~~ 369 (405)
+.
T Consensus 615 ~~ 616 (777)
T KOG1128|consen 615 DL 616 (777)
T ss_pred Hh
Confidence 54
No 103
>PLN02789 farnesyltranstransferase
Probab=99.11 E-value=8.8e-07 Score=72.95 Aligned_cols=214 Identities=9% Similarity=0.014 Sum_probs=146.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCccHhhHHHHHHHHH
Q 035749 63 YTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYAN-DSNEAKRLFIEMMDQGVQPNVVTFSVIMDELC 141 (405)
Q Consensus 63 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (405)
+..+-..+...++.++|+.+..++++.+ |-+..+|+....++...| ++++++..++++.+..++ +..+|+.....+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHH
Confidence 3334444555678889999999998874 445566766666666677 578999999999887554 6667776665666
Q ss_pred cCCCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhc---CCh
Q 035749 142 KNGKM--EEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKN---KEI 216 (405)
Q Consensus 142 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~ 216 (405)
+.|.. +++..+++++++.+ +-+..+|.....++...|+++++++.+.++.+.+ +.+..+|+.....+.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccc
Confidence 66653 67788888888776 6678888888888888899999999999998876 55666777666555443 222
Q ss_pred ----HHHHHHHHHHHhCCCCCchhhHHHHHHHHHc----cccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhc
Q 035749 217 ----EGALSLYSEMLSKGIKPTVVTYNTLFIGLFE----IHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCK 282 (405)
Q Consensus 217 ----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 282 (405)
+..+....+++... +-+...|+.+...+.. .+...+|...+.+....+ +.+...+..++..|+.
T Consensus 196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 45666666666653 3455667666666655 233455767776666543 4456667777777764
No 104
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.11 E-value=2.5e-07 Score=86.11 Aligned_cols=202 Identities=14% Similarity=0.098 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHH
Q 035749 60 AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINP-----DVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFS 134 (405)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 134 (405)
...|...+....+.++.+.|.++.+++... +.+ -...|.+++..-..-|.-+...++|+++.+.- . ....|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~V~~ 1534 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYTVHL 1534 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHHHHH
Confidence 334444444444445555555554444332 111 01233333333333344444445555544431 1 223344
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC--ChhhHHHHHHHHhh
Q 035749 135 VIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKH--NVFSYSILINGYCK 212 (405)
Q Consensus 135 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 212 (405)
.|...|.+.+.+++|.++++.|.+. +.....+|..++..+.+.++-++|..++.++.+.- |. ........+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHhh
Confidence 4444555555555555555555443 12344445555555555555555555555444331 11 12233333444444
Q ss_pred cCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCC
Q 035749 213 NKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVA 267 (405)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 267 (405)
.|+.+++..+|+..+... +--...|+..+..-.++|+.+.+..+|+++...+++
T Consensus 1613 ~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred cCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 555555555555544431 112334444445555555555555555555544433
No 105
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.10 E-value=4.3e-07 Score=81.86 Aligned_cols=130 Identities=12% Similarity=0.046 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCChHHH
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNI-NPDVVTY 98 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ 98 (405)
..|..|...|+...+...|.+-|+++.+.+ +.+..........|++..+++.|..+.-..-+... ..-...|
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-------atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW 565 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-------ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENW 565 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhh
Confidence 357777777777667777777777777665 34566666666677776666666666332222100 0001112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 035749 99 NSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMI 157 (405)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 157 (405)
....-.|.+.++...|...|+...+..+. |...|..+..+|...|.+..|.++|.++.
T Consensus 566 ~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 566 VQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKAS 623 (1238)
T ss_pred hhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence 22333344444444444444444443222 44444444444444444444444444443
No 106
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.08 E-value=1.7e-07 Score=87.15 Aligned_cols=203 Identities=12% Similarity=0.040 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhc-CCC---CChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHH
Q 035749 166 FVYNTLMDGFCLTGRVNRAKELFVSMESM-GCK---HNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTL 241 (405)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (405)
..|...|......++.++|.++.+++... ++. .-...|.++++.-...|.-+...++|+++.+. ......|..|
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~L 1536 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLKL 1536 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHHH
Confidence 33444444444444444444444444321 000 01123333333333344444444444444442 1112234444
Q ss_pred HHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCc--cHHHHHHHHHHHHhcC
Q 035749 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCEL--DIRSYSCLIDGLCKSG 319 (405)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~ 319 (405)
...|.+.+..++|.++++.|.+.- ......|...+..+.++++-+.|..++.++.+.- |- ........++.-.+.|
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHhhcC
Confidence 444444444444444444444431 2333444444444444444444444444444321 11 2223333344444445
Q ss_pred CHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 035749 320 RLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAP 373 (405)
Q Consensus 320 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 373 (405)
+.+.+..+|+...... +-....|+.++..-.++|+.+.+..+|+++...++.|
T Consensus 1615 DaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred CchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 5555555554444331 1133445555555555555555555555555444443
No 107
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.08 E-value=5.5e-08 Score=77.74 Aligned_cols=188 Identities=11% Similarity=-0.068 Sum_probs=123.7
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChH-
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVV- 96 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~- 96 (405)
....+..++..+...|++++|...|+++....+. .+....++..+..++...|++++|...++++.+.. |.+..
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~ 106 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPF----SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDA 106 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCch
Confidence 3456777888888899999999999988876521 01123467788888888899999999999887763 22222
Q ss_pred --HHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHH
Q 035749 97 --TYNSVIRGFCYA--------NDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAF 166 (405)
Q Consensus 97 --~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 166 (405)
++..+..++... |+.++|.+.|+.+....+. +...+..+..... ... .. ..
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~--------~~ 167 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RL--------AG 167 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HH--------HH
Confidence 455555555544 6778888888888765322 2222221111100 000 00 01
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcCC--CCChhhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 035749 167 VYNTLMDGFCLTGRVNRAKELFVSMESMGC--KHNVFSYSILINGYCKNKEIEGALSLYSEMLSK 229 (405)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (405)
....+...+...|++.+|...++.+..... +.....+..+..++.+.|++++|...++.+...
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 112456678889999999999999877631 223567888899999999999999988887765
No 108
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.05 E-value=5.7e-07 Score=81.12 Aligned_cols=182 Identities=10% Similarity=0.055 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHH
Q 035749 35 TIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEA 114 (405)
Q Consensus 35 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 114 (405)
...|+..|-+.++.+ +.-...|..|...|....+..+|...|+...+.. +.+..........|++..+++.|
T Consensus 474 ~~~al~ali~alrld-------~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a 545 (1238)
T KOG1127|consen 474 SALALHALIRALRLD-------VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEA 545 (1238)
T ss_pred HHHHHHHHHHHHhcc-------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHH
Confidence 566666666666654 2234566677777776666777777777766653 34566666677777777777777
Q ss_pred HHHHHHHHHCC-CCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 035749 115 KRLFIEMMDQG-VQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMES 193 (405)
Q Consensus 115 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (405)
..+.-..-+.. ...-...|....-.|.+.++...+...|+...+.. |.|...|..++.+|..+|++..|.++|.++..
T Consensus 546 ~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 546 FEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred HHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 76633222211 00112223334445666677777777777666654 55666677777777777777777777766665
Q ss_pred cCCCCChhhHHHHHHHHhhcCChHHHHHHHHHH
Q 035749 194 MGCKHNVFSYSILINGYCKNKEIEGALSLYSEM 226 (405)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 226 (405)
.. |.+...---.....+..|.+.+|...+..+
T Consensus 625 Lr-P~s~y~~fk~A~~ecd~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 625 LR-PLSKYGRFKEAVMECDNGKYKEALDALGLI 656 (1238)
T ss_pred cC-cHhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 42 112111111222334445555555555444
No 109
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=4.7e-06 Score=75.64 Aligned_cols=297 Identities=14% Similarity=0.096 Sum_probs=173.0
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHH
Q 035749 58 PDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNI--NPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSV 135 (405)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (405)
.++......+.++...+-+.+-+++++++.-.+. .-+...-+.|+....+. +..+..+..+++-..+. ..
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa-------~~ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA-------PD 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc-------hh
Confidence 4566677778888888888999999988864321 12233344455444443 34555666666544321 12
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCC
Q 035749 136 IMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKE 215 (405)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 215 (405)
+...+...+-+++|..+|++. ..+....+.++. ..+..+.|.++-++.. .+..|+.+..+-.+.|.
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCc
Confidence 445556667778888887764 334444455443 3445566655555432 34567777777777777
Q ss_pred hHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHH
Q 035749 216 IEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRT 295 (405)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 295 (405)
..+|++-|-+. -|+..|..++....+.|.+++...++....+....|.. -..++-+|++.++..+-++++.
T Consensus 1120 v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~- 1190 (1666)
T KOG0985|consen 1120 VKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA- 1190 (1666)
T ss_pred hHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc-
Confidence 77777665432 25556777777777777777777777666655433332 3456666777776665554432
Q ss_pred HHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHH--------
Q 035749 296 LRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDME-------- 367 (405)
Q Consensus 296 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------- 367 (405)
.|+......++.-|...|.++.|.-+|..+ ..|..|...+...|+++.|...-+++-
T Consensus 1191 ------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~V 1255 (1666)
T KOG0985|consen 1191 ------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEV 1255 (1666)
T ss_pred ------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHH
Confidence 455555666666666666666666555432 234555555555555555554433322
Q ss_pred ----------------hCCCCCCHHHHHHHHHHHHccCchhHHHHHHHH
Q 035749 368 ----------------AKGVAPDCVAFNTLMLGCIRNNETSKVVELLHR 400 (405)
Q Consensus 368 ----------------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 400 (405)
..++-....-+..++..|...|-+++...+++.
T Consensus 1256 cfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1256 CFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred HHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 111222334455566666666777776666654
No 110
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.01 E-value=1.8e-07 Score=71.45 Aligned_cols=167 Identities=13% Similarity=0.083 Sum_probs=133.3
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHH
Q 035749 57 KPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVI 136 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (405)
|.+..+ ..+-..+.-.|+-+....+........ +.+.......+...++.|++..|...+.+..... ++|..+|+.+
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~l 140 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLL 140 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHH
Confidence 445566 677777788888888888877765432 4466667778888889999999999999988763 5588899999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCCh
Q 035749 137 MDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEI 216 (405)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 216 (405)
.-+|.+.|+++.|..-|.+..+.. +-+....+.+.-.+.-.|+.+.|..++......+ +.+..+-..+.......|++
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCCh
Confidence 999999999999999999988874 5567778888888899999999999998888764 44677777888888889999
Q ss_pred HHHHHHHHHHHh
Q 035749 217 EGALSLYSEMLS 228 (405)
Q Consensus 217 ~~a~~~~~~~~~ 228 (405)
+.|.++...-..
T Consensus 219 ~~A~~i~~~e~~ 230 (257)
T COG5010 219 REAEDIAVQELL 230 (257)
T ss_pred HHHHhhcccccc
Confidence 999888776554
No 111
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.01 E-value=1.8e-07 Score=74.71 Aligned_cols=188 Identities=8% Similarity=-0.050 Sum_probs=132.2
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccH--h
Q 035749 57 KPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDV---VTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNV--V 131 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~ 131 (405)
......+..++..+...|++++|...|+++.... |.+. .++..+..++...|++++|...++++.+..+.... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3457788889999999999999999999998763 2232 46778888999999999999999999876432111 2
Q ss_pred hHHHHHHHHHcC--------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhH
Q 035749 132 TFSVIMDELCKN--------GKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSY 203 (405)
Q Consensus 132 ~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 203 (405)
++..+..++... |++++|.+.++.+.+.. +.+...+..+..... .. ... ....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~------~~~--------~~~~ 169 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LR------NRL--------AGKE 169 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HH------HHH--------HHHH
Confidence 455555556544 67888999998888763 222223222211110 00 000 0112
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHhCCC--CCchhhHHHHHHHHHccccHHHHHHHHHHHHHc
Q 035749 204 SILINGYCKNKEIEGALSLYSEMLSKGI--KPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (405)
Q Consensus 204 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (405)
..+...+.+.|++++|+..+........ +.....+..+..++...|++++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2566778999999999999999987631 223467889999999999999999999888765
No 112
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=1.3e-05 Score=72.93 Aligned_cols=349 Identities=13% Similarity=0.121 Sum_probs=183.3
Q ss_pred HHHHHHhhcCC--CCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHH
Q 035749 5 ALFTKLKAFGC--EPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKEL 82 (405)
Q Consensus 5 ~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 82 (405)
++.+...+-++ ..|+......+.++...+-+.+-+++++++.-.+.. +..+...-+.|+....+. +..+..+.
T Consensus 968 qLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~----Fse~~nLQnLLiLtAika-d~trVm~Y 1042 (1666)
T KOG0985|consen 968 QLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSV----FSENRNLQNLLILTAIKA-DRTRVMEY 1042 (1666)
T ss_pred HHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcc----cccchhhhhhHHHHHhhc-ChHHHHHH
Confidence 34444444433 235566777888999999999999999998765432 233444555565555544 45566666
Q ss_pred HHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC
Q 035749 83 LLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVR 162 (405)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 162 (405)
.+++-.-. .|+ +...+...+-+++|..+|++.- .+..+...++.- -+..+.|.+.-++.-
T Consensus 1043 I~rLdnyD-a~~------ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n----- 1102 (1666)
T KOG0985|consen 1043 INRLDNYD-APD------IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN----- 1102 (1666)
T ss_pred HHHhccCC-chh------HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC-----
Confidence 66665442 122 2333445556677777766542 233333433332 234444444433321
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHH
Q 035749 163 PNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLF 242 (405)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 242 (405)
.+.+|..+..+-.+.|...+|++-|-+. .|+..|.-++....+.|.+++-.+.+....+..-.|... ..++
T Consensus 1103 -~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi 1173 (1666)
T KOG0985|consen 1103 -EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELI 1173 (1666)
T ss_pred -ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHH
Confidence 2345555555555555555555544331 244455555555555566655555555544443333322 2444
Q ss_pred HHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhc--------------------CCC
Q 035749 243 IGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRIL--------------------KCE 302 (405)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------~~~ 302 (405)
-+|++.++..+..+.+. .|+......+.+-|...+.++.|.-+|...... ...
T Consensus 1174 ~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 55555555444333321 234444444444444444444443333322100 002
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 035749 303 LDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLM 382 (405)
Q Consensus 303 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 382 (405)
.+..+|-.+..+|...+.+.-|. +-..++.....-...++..|-..|-+++-+.+++..+.. -+.....|+.|.
T Consensus 1247 ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL-ERAHMgmfTELa 1320 (1666)
T KOG0985|consen 1247 NSTKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL-ERAHMGMFTELA 1320 (1666)
T ss_pred cchhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch-hHHHHHHHHHHH
Confidence 24455666666666555544332 222223345566778888889999999999888877643 123445667776
Q ss_pred HHHHccCchhHHHHHHHHh
Q 035749 383 LGCIRNNETSKVVELLHRM 401 (405)
Q Consensus 383 ~~~~~~g~~~~a~~~~~~~ 401 (405)
..|.+ =++++..+.++-+
T Consensus 1321 iLYsk-ykp~km~EHl~LF 1338 (1666)
T KOG0985|consen 1321 ILYSK-YKPEKMMEHLKLF 1338 (1666)
T ss_pred HHHHh-cCHHHHHHHHHHH
Confidence 66654 3455555555443
No 113
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.00 E-value=3.5e-08 Score=71.42 Aligned_cols=95 Identities=6% Similarity=-0.135 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHH
Q 035749 22 YSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSV 101 (405)
Q Consensus 22 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 101 (405)
+..+...+...|++++|...|+.++... |.+...|..+..++...|++++|...|++....+ +.+...+..+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~l 98 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-------PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQT 98 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHH
Confidence 3344555555566666666666555543 3455555555555556666666666666555543 4455555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 035749 102 IRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
..++...|++++|...|+..++.
T Consensus 99 g~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 99 GVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 55555556666666666555554
No 114
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.00 E-value=1.3e-06 Score=77.47 Aligned_cols=334 Identities=18% Similarity=0.107 Sum_probs=191.8
Q ss_pred ChhHHHHHHH--HHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-----
Q 035749 18 NVITYSTLIN--GLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKN----- 90 (405)
Q Consensus 18 ~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----- 90 (405)
|..|-..++. .|...|+.+.|.+-.+.+. +..+|..+...|.+..+.+-|.-.+-.|....
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAl 792 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARAL 792 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHH
Confidence 4555555553 4677899999887777653 35689999999998888877765555443210
Q ss_pred ---C-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHH
Q 035749 91 ---I-NPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAF 166 (405)
Q Consensus 91 ---~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 166 (405)
. .++ ..-..........|.+++|+.+|.+..+. ..+=..|...|.|++|.++-+.--+.. -..
T Consensus 793 R~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~ 859 (1416)
T KOG3617|consen 793 RRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRN 859 (1416)
T ss_pred HHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhh
Confidence 0 121 22233344456789999999999987653 344556778899999998876433222 234
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhc----------C---------CCCChhhHHHHHHHHhhcCChHHHHHHHHHHH
Q 035749 167 VYNTLMDGFCLTGRVNRAKELFVSMESM----------G---------CKHNVFSYSILINGYCKNKEIEGALSLYSEML 227 (405)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 227 (405)
+|.....-+...++.+.|++.|++.... . ...+...|.-....+-..|+.+.|+.+|....
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 6666677777788888888888754211 0 01233444445555555666666666665544
Q ss_pred hCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCC------
Q 035749 228 SKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKC------ 301 (405)
Q Consensus 228 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------ 301 (405)
. |-.+++..+-.|+.++|..+-++ ..|......+.+.|...|++.+|..+|.++.....
T Consensus 940 D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcK 1004 (1416)
T KOG3617|consen 940 D---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCK 1004 (1416)
T ss_pred h---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 22344445556666666655432 23556666777888888888888887776542110
Q ss_pred CccHHHHHHHHHHHHhcC--CHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHH--------HHhCC-
Q 035749 302 ELDIRSYSCLIDGLCKSG--RLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLD--------MEAKG- 370 (405)
Q Consensus 302 ~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--------~~~~~- 370 (405)
..+ .-..|...+...| +.-.|.++|++.--. +...+..|-+.|.+.+|+++--+ ++..+
T Consensus 1005 End--~~d~L~nlal~s~~~d~v~aArYyEe~g~~--------~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DL 1074 (1416)
T KOG3617|consen 1005 END--MKDRLANLALMSGGSDLVSAARYYEELGGY--------AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDL 1074 (1416)
T ss_pred hcC--HHHHHHHHHhhcCchhHHHHHHHHHHcchh--------hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhc
Confidence 000 0011111122121 233344444443211 12223345566666666554221 11222
Q ss_pred -CCCCHHHHHHHHHHHHccCchhHHHHHHHHh
Q 035749 371 -VAPDCVAFNTLMLGCIRNNETSKVVELLHRM 401 (405)
Q Consensus 371 -~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 401 (405)
...|+...+.-...++...++++|..++-..
T Consensus 1075 d~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1075 DAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred CCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 2346666666667777777888887776543
No 115
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=2.7e-06 Score=75.54 Aligned_cols=164 Identities=13% Similarity=0.023 Sum_probs=99.7
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCccc--ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVV--CKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDV 95 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 95 (405)
+...|..+.+.|.+.++.+-|.--+--|....+..... ...+...-..........|-+++|+.+|.+-++.
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~------ 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY------ 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH------
Confidence 44579999999998888887654443332211000000 0001122233344456778899999999887653
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHH----------HcC-----
Q 035749 96 VTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMI----------QIG----- 160 (405)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----------~~~----- 160 (405)
..|=..|...|.|++|.++-+.--+ +. =..||.....-+-..++.+.|++.|++.. ...
T Consensus 830 ---DLlNKlyQs~g~w~eA~eiAE~~DR--iH-Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e 903 (1416)
T KOG3617|consen 830 ---DLLNKLYQSQGMWSEAFEIAETKDR--IH-LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIE 903 (1416)
T ss_pred ---HHHHHHHHhcccHHHHHHHHhhccc--ee-hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHH
Confidence 3344456678899999887664322 11 23456666666667778888887776531 111
Q ss_pred ----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 035749 161 ----VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMES 193 (405)
Q Consensus 161 ----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (405)
-..|...|.....-....|+.+.|+.+|....+
T Consensus 904 ~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 904 QYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 123556677777777788888888888887664
No 116
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.99 E-value=2e-07 Score=71.42 Aligned_cols=125 Identities=11% Similarity=0.090 Sum_probs=89.7
Q ss_pred cccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHH-HHhcCC--HHHH
Q 035749 248 IHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDG-LCKSGR--LKIA 324 (405)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~--~~~a 324 (405)
.++.+++...+....+.+ +.+...+..+...|...|++++|...++++.... +.+...+..++.+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 556667777777766664 6677777777788888888888888888877765 5567777777775 356666 4788
Q ss_pred HHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH
Q 035749 325 WELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCV 376 (405)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 376 (405)
.+++++..+.... +..++..+...+...|++++|+..|+++.+. .+|+..
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~ 179 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRVN 179 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCcc
Confidence 8888887775332 6677777777888888888888888888776 344443
No 117
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.96 E-value=1.2e-06 Score=80.53 Aligned_cols=171 Identities=12% Similarity=0.151 Sum_probs=116.9
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHH
Q 035749 57 KPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVI 136 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (405)
+.+...+..|+..+...+++++|.++.+...+.. |-....|-.+...+.+.++.+++..+ .+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 5567899999999999999999999999877763 33444555555566666665544433 23
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCCh
Q 035749 137 MDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEI 216 (405)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 216 (405)
+.......++..+..++..+... .-+...+..++.+|.+.|+.+++..+++++.+.. +.++.+.|.+...|... +.
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 33344444554444445555543 3344567778888888888888888888888876 66777888888888887 88
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHc
Q 035749 217 EGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (405)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (405)
++|.+++.+.... +...+++..+.++|.++...
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 8888888777653 44445666666666666654
No 118
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.96 E-value=1.1e-06 Score=80.76 Aligned_cols=222 Identities=12% Similarity=0.102 Sum_probs=146.9
Q ss_pred CCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 035749 16 EPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDV 95 (405)
Q Consensus 16 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 95 (405)
+.+...|..|+..+...+++++|.++.+..++.. |.....|..+...+.+.++.+++..+ .+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-------P~~i~~yy~~G~l~~q~~~~~~~~lv--~~--------- 89 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-------KKSISALYISGILSLSRRPLNDSNLL--NL--------- 89 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CcceehHHHHHHHHHhhcchhhhhhh--hh---------
Confidence 3456789999999999999999999999888864 44455566666577777776665554 22
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 035749 96 VTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGF 175 (405)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (405)
+.......++.-...++..+... .-+..++..++.+|-+.|+.+++..+++++++.. +-++.+.+.+...|
T Consensus 90 ------l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ 160 (906)
T PRK14720 90 ------IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSY 160 (906)
T ss_pred ------hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHH
Confidence 22233333443333344444443 2244577778888888888888888888888887 66788888888888
Q ss_pred HccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhC-------------------CCCCchh
Q 035749 176 CLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK-------------------GIKPTVV 236 (405)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------------------~~~~~~~ 236 (405)
... +.++|..++.++... +...+++..+.++|.++... +..--..
T Consensus 161 ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~ 224 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVG 224 (906)
T ss_pred HHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHH
Confidence 888 888888888877654 33333444444444444433 2222233
Q ss_pred hHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHh
Q 035749 237 TYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLC 281 (405)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 281 (405)
++..+...|...++++++..+++.+++.. +.|......++.+|.
T Consensus 225 ~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 225 LLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 44555566667777888888888877764 445666666666665
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.95 E-value=9.2e-08 Score=73.23 Aligned_cols=158 Identities=9% Similarity=0.129 Sum_probs=119.7
Q ss_pred HHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 035749 26 INGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGF 105 (405)
Q Consensus 26 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 105 (405)
+-.|...|+++......+.... |. . .+...++.+++...++...+.+ |.+...|..+...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----------~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~ 83 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----------PL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYY 83 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----------cc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 3467888998886555433321 11 0 1112566778888888877765 77899999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHH-HcCCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 035749 106 CYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDEL-CKNGK--MEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVN 182 (405)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 182 (405)
...|++++|...|++..+..+. +...+..+..++ ...|+ .++|.+++++..+.+ +.+...+..+...+...|+++
T Consensus 84 ~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~ 161 (198)
T PRK10370 84 LWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYA 161 (198)
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHH
Confidence 9999999999999999987544 777777777764 66676 599999999999886 567788888999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHH
Q 035749 183 RAKELFVSMESMGCKHNVFSYSI 205 (405)
Q Consensus 183 ~a~~~~~~~~~~~~~~~~~~~~~ 205 (405)
+|...++++.+.. +|+..-+..
T Consensus 162 ~Ai~~~~~aL~l~-~~~~~r~~~ 183 (198)
T PRK10370 162 QAIELWQKVLDLN-SPRVNRTQL 183 (198)
T ss_pred HHHHHHHHHHhhC-CCCccHHHH
Confidence 9999999998875 455444433
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.95 E-value=6.1e-07 Score=68.64 Aligned_cols=165 Identities=11% Similarity=0.048 Sum_probs=137.4
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 035749 94 DVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMD 173 (405)
Q Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 173 (405)
|... ..+...+...|+-+....+....... .+.+......++....+.|++..|...+++..... ++|...|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 4555 66777788888888888887776544 23355666678899999999999999999998876 889999999999
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHH
Q 035749 174 GFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVER 253 (405)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 253 (405)
+|.+.|+++.|..-|.+..+.. +.++...+.+...+.-.|+.+.|..++......+ .-|...-..+.......|+++.
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHH
Confidence 9999999999999999998875 5577788899999999999999999999988864 3366777788888899999999
Q ss_pred HHHHHHHHHH
Q 035749 254 AFKLFDEMQR 263 (405)
Q Consensus 254 a~~~~~~~~~ 263 (405)
|..+...-..
T Consensus 221 A~~i~~~e~~ 230 (257)
T COG5010 221 AEDIAVQELL 230 (257)
T ss_pred HHhhcccccc
Confidence 9998776543
No 121
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=1.7e-06 Score=66.25 Aligned_cols=250 Identities=13% Similarity=0.042 Sum_probs=144.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 035749 102 IRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181 (405)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 181 (405)
++-+.-.|++..++..-....... -+...-..+.++|...|.+..... .+.... .|....+..+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchh
Confidence 344555677776665554443321 233334445566666666544332 222222 33444444444444444444
Q ss_pred HHHHH-HHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHH
Q 035749 182 NRAKE-LFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDE 260 (405)
Q Consensus 182 ~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 260 (405)
+.-.. +.+.+.......+......-...|+..+++++|++...... +......=+..+.+..+.+-|...+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333 33333333323333333444556778888888888776621 223333334556677778888888888
Q ss_pred HHHcCCCccHHHHHHHHHHHhc----CCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCc
Q 035749 261 MQRHGVAADTWAYRTFIDGLCK----NGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVL 336 (405)
Q Consensus 261 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 336 (405)
|.+- .+..+++.+..++.+ .+....|.-+|+++.+.- +|++.+.+..+.++...|++++|..+++.......
T Consensus 163 mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 8764 255666666666654 345777888888887643 77888888888888888888888888888776533
Q ss_pred CccHHHHHHHHHHHHcCCCHHH-HHHHHHHHHh
Q 035749 337 IADVVTYNIMIHALCADGKMDK-AHDLFLDMEA 368 (405)
Q Consensus 337 ~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~ 368 (405)
. ++.+...++.+-...|...+ ..+.+.++..
T Consensus 239 ~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 239 K-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred C-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 2 56666666666566665443 3445555554
No 122
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.92 E-value=8.8e-07 Score=80.52 Aligned_cols=148 Identities=9% Similarity=0.038 Sum_probs=124.8
Q ss_pred ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHH
Q 035749 56 CKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSV 135 (405)
Q Consensus 56 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (405)
.+.++..+..|.....+.|++++|..+++...+.. |.+......++..+.+.+++++|+..+++.....+. +......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 35668899999999999999999999999999874 556788888999999999999999999999987544 6777888
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 035749 136 IMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILI 207 (405)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 207 (405)
+..++...|++++|..+|+++...+ +.+..++..+..++...|+.++|...|+...+.. .+....|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 8889999999999999999999843 5568889999999999999999999999998764 34445554443
No 123
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.90 E-value=4e-07 Score=65.94 Aligned_cols=117 Identities=9% Similarity=-0.026 Sum_probs=81.4
Q ss_pred HHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 035749 39 LNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLF 118 (405)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 118 (405)
..+|+++++.+ |+ .+..+...+...|++++|...|+...... |.+...|..+..++...|++++|...|
T Consensus 13 ~~~~~~al~~~--------p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y 81 (144)
T PRK15359 13 EDILKQLLSVD--------PE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFY 81 (144)
T ss_pred HHHHHHHHHcC--------HH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34666666543 33 24456677777888888888888877664 557777777888888888888888888
Q ss_pred HHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 035749 119 IEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVY 168 (405)
Q Consensus 119 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 168 (405)
+......+ .+...+..+..++...|++++|...|+..++.. +.+...+
T Consensus 82 ~~Al~l~p-~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-p~~~~~~ 129 (144)
T PRK15359 82 GHALMLDA-SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-YADASWS 129 (144)
T ss_pred HHHHhcCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 88877643 366777777777777888888888888777763 3333333
No 124
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=8.2e-06 Score=62.68 Aligned_cols=250 Identities=15% Similarity=0.143 Sum_probs=125.6
Q ss_pred HHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 035749 26 INGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGF 105 (405)
Q Consensus 26 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 105 (405)
++-+.-.|++..++..-+..... +.+...-..+.++|...|++..... +++... .|.......+....
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--------~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~ 82 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--------KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYL 82 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--------cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHh
Confidence 45556667777776665554432 2333444445556666665544333 222222 23333333333333
Q ss_pred HhcCCHHHHH-HHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 035749 106 CYANDSNEAK-RLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRA 184 (405)
Q Consensus 106 ~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 184 (405)
..-++.++-+ ++.+.+.......+......-+..|+..|++++|++...... +......=..++.+..+++-|
T Consensus 83 ~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A 156 (299)
T KOG3081|consen 83 ELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLA 156 (299)
T ss_pred hCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333 333444333333232333344455667777777776665521 112222223344556666777
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHhh----cCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHH
Q 035749 185 KELFVSMESMGCKHNVFSYSILINGYCK----NKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDE 260 (405)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 260 (405)
.+.+++|.+.. +..+.+.|.+++.+ .+...+|.-+|+++.++ .+|+..+.+....++...+++++|..+++.
T Consensus 157 ~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~e 232 (299)
T KOG3081|consen 157 EKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEE 232 (299)
T ss_pred HHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHH
Confidence 77777776542 34444444444433 34566666677666653 356666666666666666777777777766
Q ss_pred HHHcCCCccHHHHHHHHHHHhcCCCh-HHHHHHHHHHHh
Q 035749 261 MQRHGVAADTWAYRTFIDGLCKNGYI-VEALELFRTLRI 298 (405)
Q Consensus 261 ~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~ 298 (405)
.+... ..++.++..++.+-...|.. +-..+.+.+++.
T Consensus 233 aL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 233 ALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 66554 33455554444444444433 333444444443
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.85 E-value=1.8e-06 Score=78.48 Aligned_cols=148 Identities=11% Similarity=0.033 Sum_probs=118.4
Q ss_pred CCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHH
Q 035749 231 IKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSC 310 (405)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 310 (405)
...+...+..|.....+.|.+++|..+++.+.+.. |.+......+...+.+.+++++|+...++..... +.+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 34567788888888889999999999999988874 5556677788888889999999999999988876 667778888
Q ss_pred HHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 035749 311 LIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLM 382 (405)
Q Consensus 311 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 382 (405)
++.++...|++++|..+|+++...+ +.+..++..+..++...|+.++|...|+++.+. ..|....|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 8888999999999999999988732 235788888888999999999999999998876 344445554443
No 126
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.84 E-value=1.5e-05 Score=70.29 Aligned_cols=267 Identities=18% Similarity=0.165 Sum_probs=134.6
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHH
Q 035749 23 STLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVI 102 (405)
Q Consensus 23 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 102 (405)
...|-.|....++++|+.+-+.. + .|.-...-...++.+...|+-++|-++- .. +..+ ...|
T Consensus 561 e~aigmy~~lhkwde~i~lae~~---~------~p~~eklk~sy~q~l~dt~qd~ka~elk----~s----dgd~-laai 622 (1636)
T KOG3616|consen 561 EEAIGMYQELHKWDEAIALAEAK---G------HPALEKLKRSYLQALMDTGQDEKAAELK----ES----DGDG-LAAI 622 (1636)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhc---C------ChHHHHHHHHHHHHHHhcCchhhhhhhc----cc----cCcc-HHHH
Confidence 34566677777888887765542 1 2333334455556666667666665431 11 1111 2345
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc----------------------C
Q 035749 103 RGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI----------------------G 160 (405)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------------------~ 160 (405)
+.|.+.|.+.+|.+....=.. ...|......+..++.+..-+++|-.+|+++..- .
T Consensus 623 qlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfa 700 (1636)
T KOG3616|consen 623 QLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFA 700 (1636)
T ss_pred HHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhh
Confidence 556666666655543221110 1123333333333333333333333333333210 0
Q ss_pred CCCCHHHH-HHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHH
Q 035749 161 VRPNAFVY-NTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYN 239 (405)
Q Consensus 161 ~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (405)
+|..+... ......+...|+++.|...|-+... ....+.+....+.|.+|+.+++.+.... .-..-|.
T Consensus 701 fp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk--~~s~yy~ 769 (1636)
T KOG3616|consen 701 FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYG 769 (1636)
T ss_pred CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccch
Confidence 11111111 1222233344444444444333211 1123444556677788888887776653 2334466
Q ss_pred HHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC
Q 035749 240 TLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSG 319 (405)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 319 (405)
.+...|...|+++.|.++|-+.- .+.-.+.+|.+.|+|+.|.++-.+... .......|..-..-.-..|
T Consensus 770 ~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehg 838 (1636)
T KOG3616|consen 770 EIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHG 838 (1636)
T ss_pred HHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhc
Confidence 67777888888888887775432 233456777888888888777665542 2334444544455556666
Q ss_pred CHHHHHHHHhhc
Q 035749 320 RLKIAWELFHSL 331 (405)
Q Consensus 320 ~~~~a~~~~~~~ 331 (405)
++.+|.+++-.+
T Consensus 839 kf~eaeqlyiti 850 (1636)
T KOG3616|consen 839 KFAEAEQLYITI 850 (1636)
T ss_pred chhhhhheeEEc
Confidence 666666665443
No 127
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=5.8e-06 Score=62.98 Aligned_cols=195 Identities=14% Similarity=0.099 Sum_probs=143.1
Q ss_pred HhcCchHHHHHHHHHHHcCCCCCcccccccH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhc
Q 035749 30 CRTGHTIVALNLFEEMINGNGEFGVVCKPDA-VIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYA 108 (405)
Q Consensus 30 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 108 (405)
....+.++.++++..++...+.. ...++. ..|..++-+....|+.+-|...++++...- |-+..+-..-.-.+-..
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~--~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~ 99 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSG--ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEAT 99 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhc--ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHh
Confidence 34556777777777776543211 023343 367777888888999999999999988763 43444433333345567
Q ss_pred CCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 035749 109 NDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELF 188 (405)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 188 (405)
|++++|+++|+.+++.++ .|..++..-+...-..|+.-+|++-+....+. +..|...|..+...|...|++++|.-++
T Consensus 100 ~~~~~A~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 100 GNYKEAIEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred hchhhHHHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 899999999999998863 36666766666777778888888888888776 5789999999999999999999999999
Q ss_pred HHHHhcCCCCChhhHHHHHHHHhhcC---ChHHHHHHHHHHHhCC
Q 035749 189 VSMESMGCKHNVFSYSILINGYCKNK---EIEGALSLYSEMLSKG 230 (405)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~ 230 (405)
+++.-.. |.++..+..+...+.-.| +...+.+.|.+.++..
T Consensus 178 EE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 178 EELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 9998764 556666666666655444 6778899999988863
No 128
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.82 E-value=3.8e-07 Score=65.85 Aligned_cols=98 Identities=11% Similarity=0.035 Sum_probs=59.2
Q ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHH
Q 035749 19 VITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTY 98 (405)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (405)
......+...+...|++++|...|+.+...+ +.+...+..+...+...|++++|...+++..+.+ +.+...+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~ 88 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-------PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPY 88 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHH
Confidence 3445555566666666666666666666543 3455666666666666666666666666665543 4455555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 99 NSVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
..+..++...|++++|...|+...+.
T Consensus 89 ~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 89 FHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56666666666666666666666554
No 129
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=9.7e-06 Score=61.82 Aligned_cols=188 Identities=12% Similarity=0.086 Sum_probs=140.3
Q ss_pred CChHHHHHHHHHHHhC---C-CCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHH
Q 035749 74 GFVDKAKELLLQMKDK---N-INPDVV-TYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEE 148 (405)
Q Consensus 74 ~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 148 (405)
.+.++.++++.++... | ..++.+ .|..++-+....|+.+-|..+++.+... .+-+...-..-...+-..|.+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhh
Confidence 4556666666655432 2 345544 3556677778899999999999999876 33333443333444566799999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 035749 149 ASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLS 228 (405)
Q Consensus 149 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (405)
|+++++.+++.+ +.|..++..-+-+.-..|+.-+|++-+....+.- ..|...|.-+...|...|++++|.-.+++++-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F-~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF-MNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 999999999986 6777778777777778888889999888888764 77999999999999999999999999999987
Q ss_pred CCCCCchhhHHHHHHHHHc---cccHHHHHHHHHHHHHcC
Q 035749 229 KGIKPTVVTYNTLFIGLFE---IHQVERAFKLFDEMQRHG 265 (405)
Q Consensus 229 ~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~ 265 (405)
.. |.++..+..+...+.- ..+.+.+.++|.+.++..
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 63 3355555566555443 446788999999998864
No 130
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.79 E-value=1.4e-05 Score=70.38 Aligned_cols=47 Identities=19% Similarity=0.176 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHH
Q 035749 307 SYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDL 362 (405)
Q Consensus 307 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 362 (405)
+...+..-+...|++..|...|-+..+ |...+..|...+-|++|-++
T Consensus 884 t~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 884 THKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred HHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHH
Confidence 344445555556666666555544332 33344445555555555444
No 131
>PF12854 PPR_1: PPR repeat
Probab=98.78 E-value=1e-08 Score=52.85 Aligned_cols=33 Identities=55% Similarity=1.095 Sum_probs=31.5
Q ss_pred cCCCCChhHHHHHHHHHHhcCchHHHHHHHHHH
Q 035749 13 FGCEPNVITYSTLINGLCRTGHTIVALNLFEEM 45 (405)
Q Consensus 13 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 45 (405)
.|++||..+|+.+|.+|++.|++++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 478999999999999999999999999999987
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.78 E-value=7.6e-07 Score=64.26 Aligned_cols=110 Identities=14% Similarity=0.122 Sum_probs=82.0
Q ss_pred HHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 035749 41 LFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIE 120 (405)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 120 (405)
.++++++.. |.+......+...+...|++++|.+.++.+...+ +.+...+..+..++...|++++|..+++.
T Consensus 5 ~~~~~l~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 76 (135)
T TIGR02552 5 TLKDLLGLD-------SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYAL 76 (135)
T ss_pred hHHHHHcCC-------hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666553 3455667777777888888888888888887764 55777788888888888888888888888
Q ss_pred HHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 121 MMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
..+.+ +.+...+..+..++...|++++|...++...+.
T Consensus 77 ~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 77 AAALD-PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77764 335666777777888888888888888887776
No 133
>PF12854 PPR_1: PPR repeat
Probab=98.72 E-value=2.5e-08 Score=51.36 Aligned_cols=32 Identities=34% Similarity=0.642 Sum_probs=16.6
Q ss_pred CCCCCHHHHHHHHHHHHccCchhHHHHHHHHh
Q 035749 370 GVAPDCVAFNTLMLGCIRNNETSKVVELLHRM 401 (405)
Q Consensus 370 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 401 (405)
|+.||..+|+.++.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555544
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.67 E-value=2.5e-05 Score=65.45 Aligned_cols=140 Identities=12% Similarity=0.103 Sum_probs=75.1
Q ss_pred HHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHH
Q 035749 209 GYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVE 288 (405)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 288 (405)
.+...|++++|+..++.++... +-|..........+.+.++.++|.+.++++.... +........+..++.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHH
Confidence 3444556666666666655541 2233333344455556666666666666665542 2223444445556666666666
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 035749 289 ALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEA 368 (405)
Q Consensus 289 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 368 (405)
|..+++...... +.|+..|..|.++|...|+..++..-. ...+...|+++.|+..+....+
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHHHHHHHHHHHH
Confidence 666666555443 455556666666666666555554332 2234445666666666666655
Q ss_pred C
Q 035749 369 K 369 (405)
Q Consensus 369 ~ 369 (405)
.
T Consensus 454 ~ 454 (484)
T COG4783 454 Q 454 (484)
T ss_pred h
Confidence 4
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.65 E-value=4.3e-05 Score=64.13 Aligned_cols=119 Identities=18% Similarity=0.186 Sum_probs=60.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHH
Q 035749 105 FCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPN-AFVYNTLMDGFCLTGRVNR 183 (405)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 183 (405)
+...|.+++|+..++.++..- +-|..........+.+.++.++|.+.++++... .|+ ......+..++.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 344555555555555555442 224444444445555555555555555555554 222 3334445555555555555
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHH
Q 035749 184 AKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEML 227 (405)
Q Consensus 184 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 227 (405)
|+.+++...... +.++..|..|.++|...|+..++.....+..
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 555555554443 4455555555555555555555554444433
No 136
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.63 E-value=3.6e-06 Score=61.29 Aligned_cols=115 Identities=11% Similarity=0.000 Sum_probs=53.2
Q ss_pred CCChHHHHHHHHHHHhcCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCcc--HHHHHHHHHHHHcCCCHH
Q 035749 283 NGYIVEALELFRTLRILKCELD---IRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIAD--VVTYNIMIHALCADGKMD 357 (405)
Q Consensus 283 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 357 (405)
.++...+...++.+.... +.+ ......+...+...|++++|...|+.+......|+ ......+...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 445555555555554432 222 12233344445555555555555555554432221 112333445555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHH
Q 035749 358 KAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHR 400 (405)
Q Consensus 358 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 400 (405)
+|+..++..... ...+..+.....++.+.|++++|+..|++
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555555443221 22233344445555555555555555554
No 137
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.61 E-value=8.3e-06 Score=59.40 Aligned_cols=125 Identities=13% Similarity=0.123 Sum_probs=83.5
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHcCCCcc---HHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCcc--HHHHHHHH
Q 035749 238 YNTLFIGLFEIHQVERAFKLFDEMQRHGVAAD---TWAYRTFIDGLCKNGYIVEALELFRTLRILKCELD--IRSYSCLI 312 (405)
Q Consensus 238 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~ 312 (405)
|..++..+ ..++...+...++.+.... +.+ ....-.+...+...|++++|...|+.+......++ ......++
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 44444443 3677777777777777653 223 22333455677778888888888888877652222 22445567
Q ss_pred HHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 035749 313 DGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDM 366 (405)
Q Consensus 313 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 366 (405)
..+...|++++|+..++...... .....+...+..+...|++++|...|++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77888888888888887755432 34556677788888888888888888764
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.58 E-value=8.9e-06 Score=68.53 Aligned_cols=124 Identities=15% Similarity=0.157 Sum_probs=96.3
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhc
Q 035749 203 YSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCK 282 (405)
Q Consensus 203 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 282 (405)
...++..+...++++.|+.+++++.+.. |+ ....++..+...++..+|.+++.+.+... +.+...+......+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3455666667788888888888888763 44 34456777777788888888888888653 5567777777778888
Q ss_pred CCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 035749 283 NGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLP 332 (405)
Q Consensus 283 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 332 (405)
.++++.|+.+.+++.... |.+..+|..|+.+|...|+++.|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 888999999998888775 5666788889999999999999988888765
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.57 E-value=1.5e-05 Score=67.18 Aligned_cols=126 Identities=13% Similarity=0.121 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 035749 96 VTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGF 175 (405)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (405)
.....|+..+...++++.|+.+++++.+.. |+ ....+++.+...++-.+|.+++.+.++.. +.+......-...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 334455666666778888888888887663 33 33456677777777778888888777653 45666666667777
Q ss_pred HccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHH
Q 035749 176 CLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEML 227 (405)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 227 (405)
...++++.|+.+.+++.... |.+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 78888888888888887764 4455678888888888888888887777654
No 140
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=0.00017 Score=59.37 Aligned_cols=158 Identities=11% Similarity=0.039 Sum_probs=87.8
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHH-------------
Q 035749 173 DGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYN------------- 239 (405)
Q Consensus 173 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------- 239 (405)
.++...|+.++|.+.--...+.. ..+......-..++.-.++.+.+...|++.+..+ |+...-.
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHH
Confidence 35556666676666666555543 2222222222233444566677777777666542 3322111
Q ss_pred HHHHHHHccccHHHHHHHHHHHHHc---CCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 035749 240 TLFIGLFEIHQVERAFKLFDEMQRH---GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLC 316 (405)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (405)
.-..-..+.|++..|.+.|.+.+.. +..++...|.....+..+.|+..+|+.--+.....+ +.-...+..-+.++.
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l 332 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHL 332 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHH
Confidence 1112245667777777777777653 233444555555666667777777777776666543 222334444555666
Q ss_pred hcCCHHHHHHHHhhccCC
Q 035749 317 KSGRLKIAWELFHSLPRG 334 (405)
Q Consensus 317 ~~~~~~~a~~~~~~~~~~ 334 (405)
..++|++|.+-+++..+.
T Consensus 333 ~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 677777777777766543
No 141
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.46 E-value=0.0011 Score=60.30 Aligned_cols=74 Identities=18% Similarity=0.184 Sum_probs=40.1
Q ss_pred HhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcC
Q 035749 30 CRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYAN 109 (405)
Q Consensus 30 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 109 (405)
.+.|+.++|..+++.....+ +.|..+...+-.+|.+.++.++|..+|++.... -|+......+..+|.+.+
T Consensus 54 ~r~gk~~ea~~~Le~~~~~~-------~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~ 124 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGLK-------GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREK 124 (932)
T ss_pred HHhcCchhHHHHHhhhccCC-------CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHH
Confidence 45666666665555544432 235555666666666666666666666666554 234444444444555554
Q ss_pred CHH
Q 035749 110 DSN 112 (405)
Q Consensus 110 ~~~ 112 (405)
++.
T Consensus 125 ~yk 127 (932)
T KOG2053|consen 125 SYK 127 (932)
T ss_pred HHH
Confidence 443
No 142
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.42 E-value=8.1e-06 Score=54.72 Aligned_cols=96 Identities=16% Similarity=0.150 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHH
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNS 100 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (405)
++..+...+...|++++|+..++++.+.. +.+...+..+..++...+++++|.+.++...... +.+..++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~ 73 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYN 73 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHH
Confidence 35566677777888888888888877654 3444667777777777788888888887777654 344556777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 101 VIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
+...+...|++++|...+....+.
T Consensus 74 ~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 74 LGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHcc
Confidence 777777777777777777776543
No 143
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.41 E-value=2e-05 Score=55.38 Aligned_cols=102 Identities=11% Similarity=0.040 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCChHH
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNI--NPDVVT 97 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~ 97 (405)
.++..++..+.+.|++++|.+.|+.+.+..+. .+.....+..+..++.+.|+++.|...|+.+..... +....+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 78 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPK----STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDA 78 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHH
Confidence 34566677777778888888888777765421 111245666677777777778888887777765421 112455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 035749 98 YNSVIRGFCYANDSNEAKRLFIEMMDQG 125 (405)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 125 (405)
+..+..++...|+.++|...++++.+..
T Consensus 79 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 79 LLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 6666777777777777777777777653
No 144
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.39 E-value=2e-05 Score=56.33 Aligned_cols=96 Identities=7% Similarity=-0.120 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHH
Q 035749 61 VIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDEL 140 (405)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (405)
.....+...+...|++++|.++|+.+.... +-+...|-.|..++-..|++++|+..|......++. ++..+-.+..++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHH
Confidence 334444444445555555555555544432 334444444555555555555555555555444322 444444445555
Q ss_pred HcCCCHHHHHHHHHHHHH
Q 035749 141 CKNGKMEEASQLLELMIQ 158 (405)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~ 158 (405)
...|+.+.|.+.|+..+.
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555554444
No 145
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.37 E-value=0.0019 Score=58.79 Aligned_cols=225 Identities=12% Similarity=0.060 Sum_probs=135.9
Q ss_pred HHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhc
Q 035749 29 LCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYA 108 (405)
Q Consensus 29 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 108 (405)
....+++.+|++-.+++.+..| ..+-+.++.+ -.+.+.|+.++|..+++.....+ +.|..+...+-.+|...
T Consensus 19 ~ld~~qfkkal~~~~kllkk~P-----n~~~a~vLka--Lsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~ 90 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHP-----NALYAKVLKA--LSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDL 90 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCC-----CcHHHHHHHH--HHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHH
Confidence 4567899999999999998762 1222233333 34678999999999998887665 33888999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC--------
Q 035749 109 NDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGR-------- 180 (405)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------- 180 (405)
+..++|..+|++..+. -|+......+..+|.+.+.+.+-.++--++-+. ++.....+=.+++.+.+...
T Consensus 91 ~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~ 167 (932)
T KOG2053|consen 91 GKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDP 167 (932)
T ss_pred hhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccc
Confidence 9999999999999876 456777888888999888877655544444332 23344444444444433211
Q ss_pred --HHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHhhcCChHHHHHHHHH-HHhCCCCCchhhHHHHHHHHHccccHHHHHH
Q 035749 181 --VNRAKELFVSMESMGCKH-NVFSYSILINGYCKNKEIEGALSLYSE-MLSKGIKPTVVTYNTLFIGLFEIHQVERAFK 256 (405)
Q Consensus 181 --~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 256 (405)
..-|.+..+.+.+.+.+. +..-.......+...|++++|..++.. ..+.-..-+...-+.-+..+...+++.+..+
T Consensus 168 i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~ 247 (932)
T KOG2053|consen 168 ILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFE 247 (932)
T ss_pred hhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHH
Confidence 123444555554433111 111222233344556677777777732 2222122222222333444445555555555
Q ss_pred HHHHHHHc
Q 035749 257 LFDEMQRH 264 (405)
Q Consensus 257 ~~~~~~~~ 264 (405)
+-.++...
T Consensus 248 l~~~Ll~k 255 (932)
T KOG2053|consen 248 LSSRLLEK 255 (932)
T ss_pred HHHHHHHh
Confidence 55555444
No 146
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.35 E-value=0.0013 Score=56.29 Aligned_cols=151 Identities=15% Similarity=0.116 Sum_probs=118.4
Q ss_pred hHHHHHHHHHHHhCC-CCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhcCCChHHHHHHH
Q 035749 216 IEGALSLYSEMLSKG-IKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAA-DTWAYRTFIDGLCKNGYIVEALELF 293 (405)
Q Consensus 216 ~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 293 (405)
.+....+++++.... ..|+ .+|...+....+..-...|..+|.++.+.+..+ +..+..+++..++ .++.+-|..+|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 566677777776642 2333 467788888888889999999999999887666 5666677777665 58899999999
Q ss_pred HHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCcc--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 294 RTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIAD--VVTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
+--.+.- ..++.-....+..+...++-..+..+|+++...+..|+ ...|..++..-..-|+...+.++-+++...
T Consensus 425 eLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 425 ELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 9866542 44555567778888899999999999999988755554 578999999889999999999998887764
No 147
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.34 E-value=1.7e-05 Score=67.19 Aligned_cols=124 Identities=11% Similarity=0.143 Sum_probs=91.5
Q ss_pred CCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHH
Q 035749 265 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILK--CELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVT 342 (405)
Q Consensus 265 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 342 (405)
+.+.+...+..++..+....+.+.+..++-+.+... ...-..+..++++.|...|..+++..+++.=...|+.||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 335566667777777777777888888877776541 112233456888888888888888888888888888888888
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 035749 343 YNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRN 388 (405)
Q Consensus 343 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 388 (405)
++.|+..+.+.|++..|.++.-.|...+...++.|+..-+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888887776666666666555555544
No 148
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.32 E-value=1.7e-06 Score=56.21 Aligned_cols=82 Identities=15% Similarity=0.188 Sum_probs=54.0
Q ss_pred cCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCH
Q 035749 32 TGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDS 111 (405)
Q Consensus 32 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 111 (405)
+|+++.|+.+|+++.+..+ ..++...+..+..++.+.|++++|+.++++ .+.+ +.+......+..++.+.|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~-----~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y 74 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDP-----TNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKY 74 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHC-----GTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-H
T ss_pred CccHHHHHHHHHHHHHHCC-----CChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCH
Confidence 5778888888888877651 012455666678888888888888888877 3222 22345555667778888888
Q ss_pred HHHHHHHHH
Q 035749 112 NEAKRLFIE 120 (405)
Q Consensus 112 ~~a~~~~~~ 120 (405)
++|++++++
T Consensus 75 ~eAi~~l~~ 83 (84)
T PF12895_consen 75 EEAIKALEK 83 (84)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 888887765
No 149
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.32 E-value=6e-05 Score=53.92 Aligned_cols=98 Identities=10% Similarity=-0.067 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHH
Q 035749 270 TWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHA 349 (405)
Q Consensus 270 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 349 (405)
...+..+...+...|++++|..+|+.+.... +.+..-|..|..++...|++++|+..|.......+ .|+..+..+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHH
Confidence 3344455556667788888888888877665 55667777788888888888888888887766543 367777778888
Q ss_pred HHcCCCHHHHHHHHHHHHhC
Q 035749 350 LCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 350 ~~~~g~~~~A~~~~~~~~~~ 369 (405)
+...|+.+.|.+.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888877765
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.30 E-value=5.6e-05 Score=53.03 Aligned_cols=99 Identities=13% Similarity=0.038 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--ccHhhHHHH
Q 035749 61 VIYTTIIDGLCKEGFVDKAKELLLQMKDKNI--NPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQ--PNVVTFSVI 136 (405)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 136 (405)
.++..++..+.+.|++++|.+.|+.+.+... +.....+..+..++.+.|+++.|...|+.+....+. .....+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3455566666666666666666666655421 011234555666666666666666666666553211 113345555
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHc
Q 035749 137 MDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
..++.+.|++++|...++.+.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 55666666666666666666655
No 151
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.28 E-value=3.8e-05 Score=65.01 Aligned_cols=94 Identities=12% Similarity=0.033 Sum_probs=79.9
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHH
Q 035749 24 TLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIR 103 (405)
Q Consensus 24 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 103 (405)
.....+...|++++|+..|+++++.. +.+...|..+..++...|++++|+..++++.+.. +.+...|..+..
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~-------P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~ 78 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD-------PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGT 78 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 34566778899999999999999876 5677888899999999999999999999998875 557788888899
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC
Q 035749 104 GFCYANDSNEAKRLFIEMMDQG 125 (405)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~ 125 (405)
++...|++++|+..|++.++..
T Consensus 79 ~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 79 ACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred HHHHhCCHHHHHHHHHHHHHhC
Confidence 9999999999999999988764
No 152
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.28 E-value=0.0016 Score=54.48 Aligned_cols=380 Identities=13% Similarity=0.098 Sum_probs=207.3
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHH
Q 035749 5 ALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLL 84 (405)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 84 (405)
++-+++.+. |.|..+|..||.-+...|.+++-.++++++..- +|--+.+|...+..-...+++.....+|.
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-------fp~~~~aw~ly~s~ELA~~df~svE~lf~ 100 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-------FPIMEHAWRLYMSGELARKDFRSVESLFG 100 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-------CccccHHHHHHhcchhhhhhHHHHHHHHH
Confidence 445555554 677889999999999999999999999999764 34556788888888888899999999999
Q ss_pred HHHhCCCCCChHHHHHHHHHHHhcCCHH------HHHHHHHHHHH-CCCCcc-HhhHHHHHHH---HHcCCCH------H
Q 035749 85 QMKDKNINPDVVTYNSVIRGFCYANDSN------EAKRLFIEMMD-QGVQPN-VVTFSVIMDE---LCKNGKM------E 147 (405)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~-~~~~~~-~~~~~~l~~~---~~~~~~~------~ 147 (405)
+..... .+...|...+....+.+..- ...+.|+-.+. .++.|- ...|+..+.. .-..|.| +
T Consensus 101 rCL~k~--l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid 178 (660)
T COG5107 101 RCLKKS--LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRID 178 (660)
T ss_pred HHHhhh--ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHH
Confidence 988764 45677777666544443211 11233333332 233332 2333333322 2223333 3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHH------HHHHH-------ccCCHHHHHHHHHHHHhc--CC----CCC---------
Q 035749 148 EASQLLELMIQIGVRPNAFVYNTL------MDGFC-------LTGRVNRAKELFVSMESM--GC----KHN--------- 199 (405)
Q Consensus 148 ~a~~~~~~~~~~~~~~~~~~~~~l------~~~~~-------~~~~~~~a~~~~~~~~~~--~~----~~~--------- 199 (405)
.....+.+++...+..-...|+.. ++... ..--+..|...++++... |. +.+
T Consensus 179 ~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r 258 (660)
T COG5107 179 KIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAAR 258 (660)
T ss_pred HHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccc
Confidence 444555555543221111111110 00000 001123333333333211 10 000
Q ss_pred -------------------------------------------hhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchh
Q 035749 200 -------------------------------------------VFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVV 236 (405)
Q Consensus 200 -------------------------------------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 236 (405)
+..|--.-..+...++-+.|+......... .|+..
T Consensus 259 ~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--spsL~ 336 (660)
T COG5107 259 TSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPSLT 336 (660)
T ss_pred cccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCchh
Confidence 001111111122234444444444333221 22211
Q ss_pred hHHHHHHHHHccccHHHHHHHHHHHHH--------------cCCC---------------ccHHHHHHHHHHHhcCCChH
Q 035749 237 TYNTLFIGLFEIHQVERAFKLFDEMQR--------------HGVA---------------ADTWAYRTFIDGLCKNGYIV 287 (405)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--------------~~~~---------------~~~~~~~~l~~~~~~~~~~~ 287 (405)
-.+...|.-.++-+.....|+...+ .+.. .-..++...+....+....+
T Consensus 337 --~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~ 414 (660)
T COG5107 337 --MFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLE 414 (660)
T ss_pred --eeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHH
Confidence 1122223333333333333332211 0110 11223445566666677788
Q ss_pred HHHHHHHHHHhcC-CCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHH-HHHHHHHHcCCCHHHHHHHHHH
Q 035749 288 EALELFRTLRILK-CELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTY-NIMIHALCADGKMDKAHDLFLD 365 (405)
Q Consensus 288 ~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~ 365 (405)
.|..+|-++.+.+ ..+++.++++++..++ .|++.-|..+|+--... .||...| +-.+..+...++-..|..+|+.
T Consensus 415 aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFet 491 (660)
T COG5107 415 AARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFET 491 (660)
T ss_pred HHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 8999999998877 4567777788777655 67888888888865443 2344433 4556667788888999999997
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHccCchhHHHHHHHHhhh
Q 035749 366 MEAKGVAPD--CVAFNTLMLGCIRNNETSKVVELLHRMDE 403 (405)
Q Consensus 366 ~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 403 (405)
.+.+ +..+ ...|..++.--..-|+...+..+-++|.+
T Consensus 492 sv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 492 SVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred hHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 7665 3334 56788888888888888887777666643
No 153
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.28 E-value=5e-06 Score=54.03 Aligned_cols=81 Identities=16% Similarity=0.137 Sum_probs=39.0
Q ss_pred CCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHH
Q 035749 283 NGYIVEALELFRTLRILKCE-LDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHD 361 (405)
Q Consensus 283 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 361 (405)
.|+++.|+.+++++...... ++...+..++.++.+.|++++|..+++. .+.+. .+......++.++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 35555666666665554321 1333444455566666666666666655 22111 122333344555556666666665
Q ss_pred HHHH
Q 035749 362 LFLD 365 (405)
Q Consensus 362 ~~~~ 365 (405)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5554
No 154
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.26 E-value=1.9e-05 Score=64.39 Aligned_cols=142 Identities=14% Similarity=0.085 Sum_probs=103.9
Q ss_pred hhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhc-CCChHHHHHHHHHHHhcCCCccHHHHHHHHHH
Q 035749 236 VTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCK-NGYIVEALELFRTLRILKCELDIRSYSCLIDG 314 (405)
Q Consensus 236 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 314 (405)
.+|..++....+.+..+.|..+|.++.+.+ ..+..+|...+..-.. .++.+.|..+|+...+. .+.+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 357778888888889999999999998653 3445556555555333 57777799999998876 36788888899999
Q ss_pred HHhcCCHHHHHHHHhhccCCCcCccH---HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 035749 315 LCKSGRLKIAWELFHSLPRGVLIADV---VTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLM 382 (405)
Q Consensus 315 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 382 (405)
+...++.+.|..+|++.... +.++. ..|...+..-.+.|+.+.+.++.+++.+. .|+...+..++
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~ 147 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFS 147 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHH
Confidence 99999999999999998876 33332 48888888888999999999999999885 44433333343
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.25 E-value=1.6e-05 Score=53.24 Aligned_cols=90 Identities=20% Similarity=0.126 Sum_probs=38.7
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCC
Q 035749 276 FIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGK 355 (405)
Q Consensus 276 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 355 (405)
+...+...|++++|...++.+.+.. +.+...+..++..+...|++++|.+.++...... +.+...+..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 3334444445555555554444332 2223334444444444444444444444443321 1122334444444444444
Q ss_pred HHHHHHHHHHHH
Q 035749 356 MDKAHDLFLDME 367 (405)
Q Consensus 356 ~~~A~~~~~~~~ 367 (405)
++.|...+.+..
T Consensus 84 ~~~a~~~~~~~~ 95 (100)
T cd00189 84 YEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 156
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.25 E-value=2.6e-06 Score=44.65 Aligned_cols=33 Identities=42% Similarity=0.927 Sum_probs=29.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 035749 342 TYNIMIHALCADGKMDKAHDLFLDMEAKGVAPD 374 (405)
Q Consensus 342 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 374 (405)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688999999999999999999999999888887
No 157
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=0.0021 Score=53.25 Aligned_cols=267 Identities=14% Similarity=0.009 Sum_probs=166.1
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHH
Q 035749 22 YSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSV 101 (405)
Q Consensus 22 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 101 (405)
.......+.+..++..|+..+..++... |.++..|..-+..+...|++++|.--.+.-.+.. +-....+...
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~ 123 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMC-------PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLRE 123 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhC-------ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccch
Confidence 3444556667778888999998888875 5566777777777777888888877666554432 1122333344
Q ss_pred HHHHHhcCCHHHHHHHHHHH---------------HHCC-CCccHhhHHHH-HHHHHcCCCHHHHHHHHHHHHHcCCCCC
Q 035749 102 IRGFCYANDSNEAKRLFIEM---------------MDQG-VQPNVVTFSVI-MDELCKNGKMEEASQLLELMIQIGVRPN 164 (405)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~---------------~~~~-~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 164 (405)
-+++...++..+|.+.++.- .... -+|....+..+ ..++...|++++|.+.--.+++.+ ..+
T Consensus 124 ~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n 202 (486)
T KOG0550|consen 124 GQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATN 202 (486)
T ss_pred hhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cch
Confidence 44444444444444333311 1111 11222333322 335567788888888877777664 333
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChh-------------hHHHHHHHHhhcCChHHHHHHHHHHHhC--
Q 035749 165 AFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVF-------------SYSILINGYCKNKEIEGALSLYSEMLSK-- 229 (405)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 229 (405)
......-..++.-.++.+.+...|++....+ |+-. .+..-.+-..+.|++..|.+.|.+.+..
T Consensus 203 ~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP 280 (486)
T KOG0550|consen 203 AEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDP 280 (486)
T ss_pred hHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCc
Confidence 3333333445667778888988888887664 3211 1222234456789999999999998875
Q ss_pred -CCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC
Q 035749 230 -GIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILK 300 (405)
Q Consensus 230 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 300 (405)
++.|+...|........+.|+..+|+.--....+.+ +.-...+..-..++...++|++|.+-++...+..
T Consensus 281 ~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 281 SNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred cccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 244555667667777788999999998888777542 1112233334456677788999999998887653
No 158
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.21 E-value=3e-06 Score=43.98 Aligned_cols=33 Identities=39% Similarity=0.632 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 035749 341 VTYNIMIHALCADGKMDKAHDLFLDMEAKGVAP 373 (405)
Q Consensus 341 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 373 (405)
.+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 468888888888888888888888888888776
No 159
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.20 E-value=4.8e-05 Score=64.41 Aligned_cols=89 Identities=13% Similarity=-0.002 Sum_probs=48.8
Q ss_pred HHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHH
Q 035749 243 IGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLK 322 (405)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 322 (405)
..+...|+++.|+..|.++++.. +.+...+..+..++...|++++|+..++++.... +.+...+..++.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 34445555666666665555543 3344555555555555566666665555555543 334455555555555555555
Q ss_pred HHHHHHhhccC
Q 035749 323 IAWELFHSLPR 333 (405)
Q Consensus 323 ~a~~~~~~~~~ 333 (405)
+|...|++..+
T Consensus 88 eA~~~~~~al~ 98 (356)
T PLN03088 88 TAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHH
Confidence 55555555554
No 160
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.20 E-value=0.0012 Score=52.63 Aligned_cols=183 Identities=11% Similarity=0.031 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHH
Q 035749 60 AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTY---NSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVI 136 (405)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (405)
+..+......+...|++++|.+.|+.+.... |-+.... -.++.++.+.+++++|...+++.++..+.-....+...
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 3334444455556677777777777766542 2222222 34556666677777777777776665322111222222
Q ss_pred HHHHH--cC---------------CC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 035749 137 MDELC--KN---------------GK---MEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGC 196 (405)
Q Consensus 137 ~~~~~--~~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 196 (405)
+.+.+ .. .+ ...|+..|+.+++. -|+. .-..+|...+..+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~-- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDR-- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHH--
Confidence 22211 01 11 12344455555444 2222 2223333333333221
Q ss_pred CCChhhHHHHHHHHhhcCChHHHHHHHHHHHhC--CCCCchhhHHHHHHHHHccccHHHHHHHHHHHH
Q 035749 197 KHNVFSYSILINGYCKNKEIEGALSLYSEMLSK--GIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQ 262 (405)
Q Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 262 (405)
-...--.+...|.+.|.+..|+.-++.+++. +.+........+..+|...|..++|..+...+.
T Consensus 174 --la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 --LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred --HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0111123455667777777777777777664 222233445566667777777777766655443
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.20 E-value=0.00016 Score=54.45 Aligned_cols=90 Identities=18% Similarity=0.092 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccc-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHH
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKP-DAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTY 98 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (405)
..+..+...+...|++++|...|+++++..+. ++ ....+..+..++.+.|++++|...+++..+.. +.+...+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 109 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEED-----PNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSAL 109 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc-----cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHH
Confidence 35666777777788888888888887765411 11 24577777788888888888888888777653 3356666
Q ss_pred HHHHHHHHhcCCHHHHH
Q 035749 99 NSVIRGFCYANDSNEAK 115 (405)
Q Consensus 99 ~~l~~~~~~~~~~~~a~ 115 (405)
..+...+...|+...+.
T Consensus 110 ~~lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHHHHcCChHhHh
Confidence 66677777666654443
No 162
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.20 E-value=5.9e-05 Score=56.61 Aligned_cols=63 Identities=11% Similarity=0.062 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 035749 61 VIYTTIIDGLCKEGFVDKAKELLLQMKDKNINP--DVVTYNSVIRGFCYANDSNEAKRLFIEMMD 123 (405)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (405)
..|..++..+...|++++|+..|++.......+ ...++..+...+...|++++|+..++....
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444444444444444444443321111 122344444444444444444444444443
No 163
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.18 E-value=8.3e-05 Score=60.68 Aligned_cols=131 Identities=13% Similarity=0.125 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCChHHH
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCK-EGFVDKAKELLLQMKDKNINPDVVTY 98 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (405)
.+|..+++...+.+..+.|..+|.++++.. ..+..+|...+..-.. .++.+.|..+|+...+. .+.+...|
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-------~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~ 73 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-------RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFW 73 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-------CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHH
Confidence 457777777777777888888888887543 2334455555444333 45566688888877765 45567777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCccH---hhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 99 NSVIRGFCYANDSNEAKRLFIEMMDQGVQPNV---VTFSVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
...+..+...|+.+.|..+|++.+.. +.++. ..|...+..-.+.|+.+.+.++.+++.+.
T Consensus 74 ~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 74 LEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777778888888888877755 33222 35666666666666666666666666654
No 164
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.18 E-value=0.0018 Score=53.19 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=10.5
Q ss_pred HHHHHHHccccHHHHHHHHHHHH
Q 035749 240 TLFIGLFEIHQVERAFKLFDEMQ 262 (405)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~ 262 (405)
.+...+.+.|++++|..+|+++.
T Consensus 160 ~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 160 KAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 33444444555555555555444
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.17 E-value=0.00056 Score=56.16 Aligned_cols=58 Identities=19% Similarity=0.282 Sum_probs=25.3
Q ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 035749 135 VIMDELCKN-GKMEEASQLLELMIQI----GVRP--NAFVYNTLMDGFCLTGRVNRAKELFVSMES 193 (405)
Q Consensus 135 ~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (405)
.+...|... |++++|.+.|++..+. + .+ -..++..++..+.+.|++++|.++|+++..
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334444444 5556666555554432 1 00 012333444455555555555555555443
No 166
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.16 E-value=3.4e-05 Score=60.61 Aligned_cols=96 Identities=16% Similarity=0.133 Sum_probs=60.9
Q ss_pred HHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHH
Q 035749 245 LFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIA 324 (405)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 324 (405)
+.+.+++.+|+..|.++++.. +-|...|..-..+|.+.|.++.|.+-.+..+..+ +-...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 455666777777777766653 4556666666666777777777766666666554 34456666677777777777777
Q ss_pred HHHHhhccCCCcCccHHHHH
Q 035749 325 WELFHSLPRGVLIADVVTYN 344 (405)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~ 344 (405)
.+.|++.++ +.|+-.+|-
T Consensus 169 ~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHHhhhc--cCCCcHHHH
Confidence 777666665 345544443
No 167
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.16 E-value=6.9e-05 Score=63.66 Aligned_cols=124 Identities=12% Similarity=0.143 Sum_probs=96.6
Q ss_pred CCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhh
Q 035749 125 GVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIG--VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFS 202 (405)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 202 (405)
+.+.+......++..+....+.+.+..++.+..... ...-..+..++++.|...|..+.++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 344566677778888888888888888888877652 222344556888999999999999999988888899999999
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHcc
Q 035749 203 YSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEI 248 (405)
Q Consensus 203 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 248 (405)
++.|+..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999988888776666666766666666554
No 168
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.15 E-value=5.1e-06 Score=43.46 Aligned_cols=33 Identities=45% Similarity=0.917 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc
Q 035749 97 TYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPN 129 (405)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 129 (405)
+|+.++.+|++.|++++|.++|.+|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344444444455555555555554444444443
No 169
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.14 E-value=5.6e-06 Score=42.96 Aligned_cols=31 Identities=45% Similarity=0.700 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 035749 97 TYNSVIRGFCYANDSNEAKRLFIEMMDQGVQ 127 (405)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 127 (405)
+|+.++.+|.+.|+++.|.++|++|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444443
No 170
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.14 E-value=0.00036 Score=61.92 Aligned_cols=137 Identities=9% Similarity=0.001 Sum_probs=79.9
Q ss_pred CCCCChhHHHHHHHHHHhc-----CchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCC--------hHHHH
Q 035749 14 GCEPNVITYSTLINGLCRT-----GHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGF--------VDKAK 80 (405)
Q Consensus 14 ~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~a~ 80 (405)
+.+.+..+|...+++.... ++...|+.+|+++++.+ |.....|..+..++..... ...+.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-------P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~ 404 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-------PDFTYAQAEKALADIVRHSQQPLDEKQLAALS 404 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 4467778899888875543 33679999999999987 3445666665544432211 22222
Q ss_pred HHHHHHHhC-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 81 ELLLQMKDK-NINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 81 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
+..++.... ..+.++..|..+.......|++++|...+++.+..+ |+...|..+...+...|+.++|...+++....
T Consensus 405 ~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 405 TELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 333322221 123344555555555555666666666666666553 35556666666666666666666666666554
No 171
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.13 E-value=0.0013 Score=48.02 Aligned_cols=155 Identities=15% Similarity=0.072 Sum_probs=94.0
Q ss_pred HHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHH
Q 035749 209 GYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVE 288 (405)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 288 (405)
+..+.-+++...+-..+-.. ..|+...-..+..+..+.|++.+|...|.+...--...|...+-.+.++....+++..
T Consensus 65 a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~ 142 (251)
T COG4700 65 ALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAA 142 (251)
T ss_pred HHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHH
Confidence 33444444444333332222 3456666666777777788888888888777765455667777777777777778877
Q ss_pred HHHHHHHHHhcCCC-ccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 035749 289 ALELFRTLRILKCE-LDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDME 367 (405)
Q Consensus 289 a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 367 (405)
|...++.+.+.+.. -++.....+.+.+...|++.+|..-|+..... -|+...-......+.++|+.+++..-+..+.
T Consensus 143 a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 143 AQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 77777777654310 12233455667777778877777777777764 3344444444455566776666554444433
No 172
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.12 E-value=7.4e-05 Score=49.49 Aligned_cols=81 Identities=17% Similarity=0.315 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCChHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCccHhh
Q 035749 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKNI-NPDVVTYNSVIRGFCYAN--------DSNEAKRLFIEMMDQGVQPNVVT 132 (405)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 132 (405)
+-...|..+...+++.....+|+.+++.|+ -|++.+|+.++.+.++.. +.-..+.+|+.|+..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334556667777999999999999999998 889999999988877653 23356677888887788888888
Q ss_pred HHHHHHHHHc
Q 035749 133 FSVIMDELCK 142 (405)
Q Consensus 133 ~~~l~~~~~~ 142 (405)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8877776653
No 173
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=0.00026 Score=56.14 Aligned_cols=116 Identities=12% Similarity=0.117 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcC---CHH
Q 035749 36 IVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYAN---DSN 112 (405)
Q Consensus 36 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~ 112 (405)
+..+.-++.-++.+ |.|..-|-.|...|...|+++.|...|.+..+.. ++++..+..+..++.... ...
T Consensus 139 ~~l~a~Le~~L~~n-------P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta 210 (287)
T COG4235 139 EALIARLETHLQQN-------PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTA 210 (287)
T ss_pred HHHHHHHHHHHHhC-------CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccH
Confidence 33444444444443 5566777777777777777777777777766653 456666666665554432 345
Q ss_pred HHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 035749 113 EAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIG 160 (405)
Q Consensus 113 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (405)
++..+|++++..+.. ++.+...+...+...|++.+|...|+.|.+..
T Consensus 211 ~a~~ll~~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 211 KARALLRQALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 666777777665433 56666666666777777777777777777663
No 174
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.10 E-value=0.0024 Score=50.85 Aligned_cols=184 Identities=9% Similarity=-0.031 Sum_probs=117.7
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhh---HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 035749 94 DVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVT---FSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNT 170 (405)
Q Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (405)
++..+-.....+...|++++|.+.|+.+...-+.+ ... ...++.++.+.+++++|...+++..+....-...-+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 44444455666778999999999999998864332 222 24567888999999999999999988742211222222
Q ss_pred HHHHHH--ccC---------------C---HHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 035749 171 LMDGFC--LTG---------------R---VNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKG 230 (405)
Q Consensus 171 l~~~~~--~~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 230 (405)
.+.+.+ ..+ + ..+|+..|+.+.+. -|+. .-..+|...+..+...
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHH-
Confidence 222222 111 2 23455666666554 2332 2234444444333321
Q ss_pred CCCchhhHHHHHHHHHccccHHHHHHHHHHHHHc--CCCccHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 035749 231 IKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRH--GVAADTWAYRTFIDGLCKNGYIVEALELFRTLR 297 (405)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 297 (405)
-...--.+..-|.+.|.+..|..-++.+++. +.+.....+..+..+|...|..++|......+.
T Consensus 174 ---la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 ---LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ---HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0011125667788999999999999999875 334456678888999999999999998877654
No 175
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.10 E-value=1.6e-05 Score=49.26 Aligned_cols=62 Identities=24% Similarity=0.356 Sum_probs=46.5
Q ss_pred HhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHH
Q 035749 30 CRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNS 100 (405)
Q Consensus 30 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (405)
...|++++|+++|+++.+.. |.+..++..++.++.+.|++++|.++++++... .|+...|..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~ 63 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQ 63 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHH
Confidence 46788888888888888875 557788888888888888888888888888876 345334433
No 176
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.09 E-value=3.7e-05 Score=47.05 Aligned_cols=58 Identities=17% Similarity=0.192 Sum_probs=46.9
Q ss_pred HHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 035749 25 LINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK 89 (405)
Q Consensus 25 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (405)
+...+.+.|++++|+..|+++++.. |.+...+..+..++...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-------PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4567788888888888888888875 557888888888888888888888888888765
No 177
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.08 E-value=0.00019 Score=53.90 Aligned_cols=81 Identities=15% Similarity=0.007 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 035749 95 VVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQP--NVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLM 172 (405)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 172 (405)
...|..++..+...|++++|+..|++.......+ ...++..+..++...|++++|...+++..+.. +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4556666667777777777777777776543222 22456667777777777777777777776653 33344444555
Q ss_pred HHHH
Q 035749 173 DGFC 176 (405)
Q Consensus 173 ~~~~ 176 (405)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5554
No 178
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.08 E-value=0.0004 Score=54.85 Aligned_cols=95 Identities=20% Similarity=0.212 Sum_probs=61.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 035749 105 FCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRA 184 (405)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 184 (405)
+.+.+++.+|+..|.+.++..+. |...|..-..+|++.|.++.|++-.+..+..+ +-...+|..|..+|...|++.+|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 44566677777777777766333 56666666667777777777777777666654 33455667777777777777777
Q ss_pred HHHHHHHHhcCCCCChhhH
Q 035749 185 KELFVSMESMGCKHNVFSY 203 (405)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~ 203 (405)
++.|++..+. .|+-.+|
T Consensus 169 ~~aykKaLel--dP~Ne~~ 185 (304)
T KOG0553|consen 169 IEAYKKALEL--DPDNESY 185 (304)
T ss_pred HHHHHhhhcc--CCCcHHH
Confidence 7777776665 3444444
No 179
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.08 E-value=0.00013 Score=59.97 Aligned_cols=270 Identities=14% Similarity=0.080 Sum_probs=168.0
Q ss_pred HHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHH--HhC--CC-CCChHHHHH
Q 035749 26 INGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQM--KDK--NI-NPDVVTYNS 100 (405)
Q Consensus 26 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~--~~-~~~~~~~~~ 100 (405)
..-+++.|+....+.+|+.+++.+.+- .+.-..+|..|..+|.-.+++++|++....= ..+ |- .-...+-..
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeD---l~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgN 100 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTED---LSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGN 100 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchH---HHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccc
Confidence 456899999999999999999876210 1222456788888888889999998865421 111 10 012233344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH----HCCC-CccHhhHHHHHHHHHcCCC--------------------HHHHHHHHHH
Q 035749 101 VIRGFCYANDSNEAKRLFIEMM----DQGV-QPNVVTFSVIMDELCKNGK--------------------MEEASQLLEL 155 (405)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~ 155 (405)
|...+--.|.+++|+....+-+ +.|- .....++..+...|...|+ ++.|.++|..
T Consensus 101 LGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~e 180 (639)
T KOG1130|consen 101 LGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYME 180 (639)
T ss_pred ccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHH
Confidence 5555666677777775543322 2221 1133455566777765543 2334444433
Q ss_pred HHH----cCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHH----hcCCC-CChhhHHHHHHHHhhcCChHHHHHHHHH
Q 035749 156 MIQ----IGV-RPNAFVYNTLMDGFCLTGRVNRAKELFVSME----SMGCK-HNVFSYSILINGYCKNKEIEGALSLYSE 225 (405)
Q Consensus 156 ~~~----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 225 (405)
-++ .|- -.-...|..|.+.|.-.|+++.|+...+.-. +.|-. ....++..+.+++.-.|+++.|.+.|..
T Consensus 181 NL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~ 260 (639)
T KOG1130|consen 181 NLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKL 260 (639)
T ss_pred HHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence 222 111 1122457777788888999999987765432 22211 2345678888999999999999999887
Q ss_pred HHh----CCC-CCchhhHHHHHHHHHccccHHHHHHHHHHHHHc-----CCCccHHHHHHHHHHHhcCCChHHHHHHHHH
Q 035749 226 MLS----KGI-KPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRH-----GVAADTWAYRTFIDGLCKNGYIVEALELFRT 295 (405)
Q Consensus 226 ~~~----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 295 (405)
... .|- .........+...|.-..++++|+.++.+-+.. ...-....+..+..++...|..++|+.+.+.
T Consensus 261 tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 261 TLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 543 221 123344556777888888899999888764321 1123456778888899999999999887766
Q ss_pred HHh
Q 035749 296 LRI 298 (405)
Q Consensus 296 ~~~ 298 (405)
..+
T Consensus 341 hl~ 343 (639)
T KOG1130|consen 341 HLR 343 (639)
T ss_pred HHH
Confidence 543
No 180
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.07 E-value=0.00057 Score=51.49 Aligned_cols=93 Identities=12% Similarity=0.066 Sum_probs=68.1
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHH
Q 035749 59 DAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINP--DVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVI 136 (405)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (405)
....+..+...+...|++++|...|++..+....+ ....+..+...+.+.|++++|...+++..+.... +...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 45567888888888999999999999887653222 1467888888888999999999999888876332 45666667
Q ss_pred HHHHHcCCCHHHHHHH
Q 035749 137 MDELCKNGKMEEASQL 152 (405)
Q Consensus 137 ~~~~~~~~~~~~a~~~ 152 (405)
..++...|+...+..-
T Consensus 113 g~~~~~~g~~~~a~~~ 128 (172)
T PRK02603 113 AVIYHKRGEKAEEAGD 128 (172)
T ss_pred HHHHHHcCChHhHhhC
Confidence 7777777765554433
No 181
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.07 E-value=0.0025 Score=49.41 Aligned_cols=67 Identities=13% Similarity=0.060 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 035749 19 VITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK 89 (405)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (405)
...+-.....+...|++.+|+..|+.+....+. .+-...+...++.++.+.|+++.|...+++..+.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~----s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPN----SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT----STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC----ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555667778899999999999999887642 2334567778888899999999999999998776
No 182
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.04 E-value=3.9e-05 Score=47.62 Aligned_cols=65 Identities=20% Similarity=0.123 Sum_probs=58.7
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhC
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEG-FVDKAKELLLQMKDK 89 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~ 89 (405)
++.+|..+...+...|++++|+..|+++++.+ |.++..|..+..++...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-------PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-------TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 56789999999999999999999999999986 567889999999999999 799999999988764
No 183
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.02 E-value=0.0089 Score=53.17 Aligned_cols=331 Identities=14% Similarity=0.066 Sum_probs=183.4
Q ss_pred CCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHH----------HHHHhcCChHHHHHHHHH
Q 035749 16 EPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTII----------DGLCKEGFVDKAKELLLQ 85 (405)
Q Consensus 16 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------~~~~~~~~~~~a~~~~~~ 85 (405)
.|.+..|..+.......-.++.|...|-+...-. .......|- +.-.--|++++|.++|-.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~---------Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld 759 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYA---------GIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLD 759 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcccc---------chhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhc
Confidence 5888899999988888888888888887764422 222222221 222234788899888877
Q ss_pred HHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC
Q 035749 86 MKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQ-GVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPN 164 (405)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 164 (405)
+-++. ..+..+.+.|+|-...++++.--.. .-..-..+++.+...++....|++|.+.|......
T Consensus 760 ~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~----- 825 (1189)
T KOG2041|consen 760 ADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT----- 825 (1189)
T ss_pred cchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----
Confidence 65542 3355566778877766665431110 00112456788888888888888888888765321
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHH
Q 035749 165 AFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIG 244 (405)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (405)
...+.++.+..++++.+.+.+.+ +.+....-.+..++.+.|.-++|.+.|-+.-. | ...+..
T Consensus 826 ----e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~t 887 (1189)
T KOG2041|consen 826 ----ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHT 887 (1189)
T ss_pred ----HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHH
Confidence 24566777777777666655544 34555666777888888888888776644321 2 234556
Q ss_pred HHccccHHHHHHHHHHHHHcCCCccHHHH--------------HHHHHHHhcCCChHHHHHHHHHHHhc----CCCccH-
Q 035749 245 LFEIHQVERAFKLFDEMQRHGVAADTWAY--------------RTFIDGLCKNGYIVEALELFRTLRIL----KCELDI- 305 (405)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------------~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~- 305 (405)
|...++|.+|.++-+...- |...++ ...+..+.+.|+.-.|-+++.+|.+. +.++-.
T Consensus 888 Cv~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~ 963 (1189)
T KOG2041|consen 888 CVELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRL 963 (1189)
T ss_pred HHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHH
Confidence 7777788777776554321 111111 11233444555555555555555332 222211
Q ss_pred ---HHHHHH-HHHH----------HhcCCHHHHHHHHhhcc--------CCCcC-ccHHHHHHHHHHHHcCCCHHHHHHH
Q 035749 306 ---RSYSCL-IDGL----------CKSGRLKIAWELFHSLP--------RGVLI-ADVVTYNIMIHALCADGKMDKAHDL 362 (405)
Q Consensus 306 ---~~~~~l-~~~~----------~~~~~~~~a~~~~~~~~--------~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 362 (405)
.++.++ +.-+ -..|..++|..+++... ++..+ .....|-.|..-....|..+.|++.
T Consensus 964 KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~T 1043 (1189)
T KOG2041|consen 964 KKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQT 1043 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 111111 1111 12455566665444321 11011 0122334444555567888888775
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHHHHccCch
Q 035749 363 FLDMEAK-GVAPDCVAFNTLMLGCIRNNET 391 (405)
Q Consensus 363 ~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~ 391 (405)
--.+.+. ++-|....|..+..+-+....+
T Consensus 1044 al~L~DYEd~lpP~eiySllALaaca~raF 1073 (1189)
T KOG2041|consen 1044 ALILSDYEDFLPPAEIYSLLALAACAVRAF 1073 (1189)
T ss_pred HhhhccHhhcCCHHHHHHHHHHHHhhhhhh
Confidence 4444432 3556677777776555544333
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.01 E-value=0.00021 Score=49.33 Aligned_cols=109 Identities=17% Similarity=0.064 Sum_probs=74.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhcCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCc--cHHHHHHHHH
Q 035749 273 YRTFIDGLCKNGYIVEALELFRTLRILKCELD--IRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIA--DVVTYNIMIH 348 (405)
Q Consensus 273 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 348 (405)
......++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+|++.......+ +......+..
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 34456677788999999999999988775443 3456677888889999999999998877642110 2222333445
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 035749 349 ALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGC 385 (405)
Q Consensus 349 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 385 (405)
++...|+.++|+..+-..... +...|..-+..|
T Consensus 84 ~L~~~gr~~eAl~~~l~~la~----~~~~y~ra~~~y 116 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEALAE----TLPRYRRAIRFY 116 (120)
T ss_pred HHHHCCCHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 677889999999888766542 333455555444
No 185
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.00 E-value=0.00099 Score=46.01 Aligned_cols=96 Identities=14% Similarity=0.071 Sum_probs=62.3
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---ChHHHH
Q 035749 23 STLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINP---DVVTYN 99 (405)
Q Consensus 23 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~ 99 (405)
..+..++-..|+.++|+.+|++.+..+.. .......+..+...+...|++++|+.++++..... |. +.....
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~----~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~ 79 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLS----GADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRV 79 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC----chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHH
Confidence 34556667788888888888888876521 11124466777778888888888888888777652 21 223333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 035749 100 SVIRGFCYANDSNEAKRLFIEMMD 123 (405)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~ 123 (405)
.+..++...|+.++|++++-....
T Consensus 80 f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 80 FLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344556677888888877766553
No 186
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=0.00046 Score=53.30 Aligned_cols=148 Identities=8% Similarity=-0.024 Sum_probs=104.0
Q ss_pred CChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHH
Q 035749 74 GFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLL 153 (405)
Q Consensus 74 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 153 (405)
...+..+++|++=. ...-+.++.++...+.+.-...++.+.++...+.++.....+++.-.+.|+.+.|...|
T Consensus 163 ~~~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf 235 (366)
T KOG2796|consen 163 LAEESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYF 235 (366)
T ss_pred cchhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHH
Confidence 33456666665533 24456677777778888888888888888776777788888888888888888888888
Q ss_pred HHHHHcCCCCCHHHHH-----HHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 035749 154 ELMIQIGVRPNAFVYN-----TLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLS 228 (405)
Q Consensus 154 ~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (405)
++..+..-..+...++ .....+.-.+++..|...+.++...+ +.++...|.-.-+..-.|+..+|++.++.+..
T Consensus 236 ~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 236 QDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred HHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8776553344433333 33445666778888888888887765 45566655555555556888889999988887
Q ss_pred C
Q 035749 229 K 229 (405)
Q Consensus 229 ~ 229 (405)
.
T Consensus 315 ~ 315 (366)
T KOG2796|consen 315 Q 315 (366)
T ss_pred c
Confidence 6
No 187
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.00083 Score=53.35 Aligned_cols=102 Identities=12% Similarity=0.080 Sum_probs=87.1
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcC---CCHHHHHHHHHHHHHcCCCCCHHHH
Q 035749 92 NPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKN---GKMEEASQLLELMIQIGVRPNAFVY 168 (405)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~ 168 (405)
|-|...|..|...|...|+...|...|.+..+.. .++...+..+..++... ....++..++++++..+ +.+..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 6799999999999999999999999999998873 33677777777765543 24678999999999886 6678888
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcC
Q 035749 169 NTLMDGFCLTGRVNRAKELFVSMESMG 195 (405)
Q Consensus 169 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 195 (405)
..+...+...|++.+|...++.|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 888899999999999999999999885
No 188
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.96 E-value=0.00083 Score=59.66 Aligned_cols=143 Identities=11% Similarity=0.056 Sum_probs=88.9
Q ss_pred CCCchhhHHHHHHHHHc-----cccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcC--------CChHHHHHHHHHHH
Q 035749 231 IKPTVVTYNTLFIGLFE-----IHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKN--------GYIVEALELFRTLR 297 (405)
Q Consensus 231 ~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~ 297 (405)
.+.+...|...+++... .++...|..+|+++++.. |.....+..+..++... .+...+.+..++..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 34566777777766432 223667888888888764 33344455444433221 12233444444433
Q ss_pred hc-CCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH
Q 035749 298 IL-KCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCV 376 (405)
Q Consensus 298 ~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 376 (405)
.. ..+.++..+..+.......|++++|...++++... .|+...|..++..+...|++++|...++++... .|...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCc
Confidence 32 12445566777766667778888888888888775 357778888888888888888888888888774 44444
Q ss_pred HH
Q 035749 377 AF 378 (405)
Q Consensus 377 ~~ 378 (405)
+|
T Consensus 488 t~ 489 (517)
T PRK10153 488 TL 489 (517)
T ss_pred hH
Confidence 43
No 189
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.88 E-value=0.00011 Score=45.48 Aligned_cols=52 Identities=25% Similarity=0.186 Sum_probs=34.4
Q ss_pred cCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCC
Q 035749 282 KNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRG 334 (405)
Q Consensus 282 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 334 (405)
..|++++|..+|+.+.... |.+..+...++.+|.+.|++++|..+++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4567777777777766654 446666666777777777777777777776654
No 190
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.88 E-value=0.01 Score=49.04 Aligned_cols=289 Identities=15% Similarity=0.106 Sum_probs=179.3
Q ss_pred HHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHH--HHcCCCHHHHHHHHHHHHHcCCCCCHHH--HHH
Q 035749 97 TYNSVIRGFC--YANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDE--LCKNGKMEEASQLLELMIQIGVRPNAFV--YNT 170 (405)
Q Consensus 97 ~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ 170 (405)
-|..|-.+++ ..|+-..|.++-.+..+. +..|......++.+ -.-.|+++.|.+-|+.|... |.... ...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 4555555444 456777777776665432 23344444444443 34579999999999999753 22222 222
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCC-CCCchhh--HHHHHHHHH-
Q 035749 171 LMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKG-IKPTVVT--YNTLFIGLF- 246 (405)
Q Consensus 171 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~~- 246 (405)
|.-...+.|+.+.|..+-+...... +.-...+...+...+..|+|+.|+++++.-.... +.++..- -..|+.+-.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 3333457788999998888877654 4456778888999999999999999998876542 2333321 112222111
Q ss_pred --ccccHHHHHHHHHHHHHcCCCccH-HHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHH
Q 035749 247 --EIHQVERAFKLFDEMQRHGVAADT-WAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKI 323 (405)
Q Consensus 247 --~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 323 (405)
-..+...|...-.+..+. .|+. ..--....++.+.|+..++-.+++.+-+.. |.+.+.. +..+.+.|+...
T Consensus 239 s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~--lY~~ar~gdta~ 312 (531)
T COG3898 239 SLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIAL--LYVRARSGDTAL 312 (531)
T ss_pred HHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHH--HHHHhcCCCcHH
Confidence 123455565555555543 3442 223344567888999999999999998774 4444332 223445555221
Q ss_pred H--H--HHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-ccCchhHHHHHH
Q 035749 324 A--W--ELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCI-RNNETSKVVELL 398 (405)
Q Consensus 324 a--~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~ 398 (405)
. . +-+..|..+ +......+..+-...|++..|..--+.... ..|....|..|...-. ..|+-.+++.++
T Consensus 313 dRlkRa~~L~slk~n----naes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wl 386 (531)
T COG3898 313 DRLKRAKKLESLKPN----NAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWL 386 (531)
T ss_pred HHHHHHHHHHhcCcc----chHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHH
Confidence 1 1 122333322 566667777888888999988887776665 4778888888776655 449988888888
Q ss_pred HHhh
Q 035749 399 HRMD 402 (405)
Q Consensus 399 ~~~~ 402 (405)
-+.+
T Consensus 387 Aqav 390 (531)
T COG3898 387 AQAV 390 (531)
T ss_pred HHHh
Confidence 7654
No 191
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.88 E-value=0.0002 Score=58.95 Aligned_cols=84 Identities=14% Similarity=0.207 Sum_probs=46.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCccH----hhHHHHHHHHHcCCCHHHHHHHHHHHH--H--cCCC-CCHHHHHHHHHH
Q 035749 104 GFCYANDSNEAKRLFIEMMDQGVQPNV----VTFSVIMDELCKNGKMEEASQLLELMI--Q--IGVR-PNAFVYNTLMDG 174 (405)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~--~--~~~~-~~~~~~~~l~~~ 174 (405)
-+++.|+.......|+..++.|-. |. ..|..+..+|.-.+++++|+++...=+ . .|-+ -...+...|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 466777888888888887776643 32 234555556666667777776543211 1 1100 122233445555
Q ss_pred HHccCCHHHHHHHH
Q 035749 175 FCLTGRVNRAKELF 188 (405)
Q Consensus 175 ~~~~~~~~~a~~~~ 188 (405)
+--.|.+++|.-+-
T Consensus 105 lKv~G~fdeA~~cc 118 (639)
T KOG1130|consen 105 LKVKGAFDEALTCC 118 (639)
T ss_pred hhhhcccchHHHHH
Confidence 55566666666543
No 192
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.87 E-value=0.0051 Score=45.15 Aligned_cols=152 Identities=11% Similarity=0.015 Sum_probs=93.6
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHH
Q 035749 70 LCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEA 149 (405)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 149 (405)
..+.=+++...+-..+-.. +.|++.....|..+..+.|+..+|...|++...--..-|......+.++....+++..|
T Consensus 66 ~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a 143 (251)
T COG4700 66 LQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAA 143 (251)
T ss_pred HHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHH
Confidence 3333444444433333222 25666666677777777777777777777776654555666667777777777777777
Q ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHH
Q 035749 150 SQLLELMIQIGV-RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSE 225 (405)
Q Consensus 150 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 225 (405)
...++++.+.+. ..++.....+.+.+...|++.+|+.-|+...+. -|+...-......+.+.|+.+++..-+..
T Consensus 144 ~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 144 QQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 777777766531 112334445667777777777777777777765 45555544455556666666555444433
No 193
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.86 E-value=2.8e-05 Score=39.21 Aligned_cols=29 Identities=34% Similarity=0.756 Sum_probs=18.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 035749 342 TYNIMIHALCADGKMDKAHDLFLDMEAKG 370 (405)
Q Consensus 342 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 370 (405)
+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 46666666666666666666666666654
No 194
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.86 E-value=8e-05 Score=46.21 Aligned_cols=63 Identities=11% Similarity=0.165 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-chhHHHHHHHHhhh
Q 035749 340 VVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNN-ETSKVVELLHRMDE 403 (405)
Q Consensus 340 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~ 403 (405)
...|..++..+...|++++|+..|++.++.+ +.+...|..+..++...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4455556666666666666666666666542 224455555556666666 56666666665544
No 195
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.85 E-value=0.00042 Score=46.03 Aligned_cols=80 Identities=14% Similarity=0.243 Sum_probs=68.7
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccc-cccHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHhCCCC
Q 035749 22 YSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVC-KPDAVIYTTIIDGLCKEG--------FVDKAKELLLQMKDKNIN 92 (405)
Q Consensus 22 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~ 92 (405)
....|..+...+++...-.+|+.+.+.+ + -|+..+|+.++.+.++.. +.-..+.+|+.|...+++
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~------i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lK 101 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNG------ITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLK 101 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcC------CCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccC
Confidence 3456777888899999999999999988 6 789999999999888653 345678899999999999
Q ss_pred CChHHHHHHHHHHHh
Q 035749 93 PDVVTYNSVIRGFCY 107 (405)
Q Consensus 93 ~~~~~~~~l~~~~~~ 107 (405)
|+..+|+.++..+.+
T Consensus 102 P~~etYnivl~~Llk 116 (120)
T PF08579_consen 102 PNDETYNIVLGSLLK 116 (120)
T ss_pred CcHHHHHHHHHHHHH
Confidence 999999999988754
No 196
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.83 E-value=8.6e-05 Score=45.38 Aligned_cols=58 Identities=16% Similarity=0.178 Sum_probs=41.7
Q ss_pred HHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 311 LIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 311 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
++..+...|++++|...|+.+.+.. +-+...+..+..++...|++++|...|+++++.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566777788888888888777764 226677777777777888888888888777764
No 197
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.021 Score=51.28 Aligned_cols=342 Identities=13% Similarity=0.100 Sum_probs=175.6
Q ss_pred hcCCCCChhHHH-----HHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCCh--HHHHHHHH
Q 035749 12 AFGCEPNVITYS-----TLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFV--DKAKELLL 84 (405)
Q Consensus 12 ~~~~~~~~~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~ 84 (405)
..|++.+-.-|. .+|.-+...+.+..|+++-..+.... ..+..+|......+.+..+. +++++.++
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~-------~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~ 497 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPE-------SQGDRVLLEWARRKIKQSDKMDEEVLDKID 497 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcc-------ccccHHHHHHHHHHHhccCccchHHHHHHH
Confidence 457777666554 44667778889999999888875432 12257788888777776432 23333333
Q ss_pred HHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----ccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 035749 85 QMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQ----PNVVTFSVIMDELCKNGKMEEASQLLELMIQIG 160 (405)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (405)
+=..... .+...|..+.+-....|+++-|..+++.=...+.. .+..-+...+.-+...|+.+....++-.+.+.-
T Consensus 498 ~kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~ 576 (829)
T KOG2280|consen 498 EKLSAKL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL 576 (829)
T ss_pred HHhcccC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 2222211 34566778888888899999888877642221100 011122233334444555555555444443320
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHH-HHHHh----CCCCCch
Q 035749 161 VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLY-SEMLS----KGIKPTV 235 (405)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~----~~~~~~~ 235 (405)
+...+ .....+...|..+|.+..+.. +.. .+-..|....+...+-.+. +.... .+..|+.
T Consensus 577 ---~~s~l------~~~l~~~p~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l 641 (829)
T KOG2280|consen 577 ---NRSSL------FMTLRNQPLALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL 641 (829)
T ss_pred ---HHHHH------HHHHHhchhhhHHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH
Confidence 11111 111223344555555544321 110 1111222222222211111 11000 1112222
Q ss_pred hhHHHHHHHHHcccc----------HHHHHHHHHHHHH-cCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCcc
Q 035749 236 VTYNTLFIGLFEIHQ----------VERAFKLFDEMQR-HGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELD 304 (405)
Q Consensus 236 ~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 304 (405)
......+.+... ..+-+.+.+.+.. .+.....-+.+--+.-+...|+..+|.++-.+.+ -||
T Consensus 642 ---k~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipd 714 (829)
T KOG2280|consen 642 ---KTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPD 714 (829)
T ss_pred ---HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----Ccc
Confidence 222233332222 1111222222221 1222333344555556666788888877776655 577
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 035749 305 IRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLG 384 (405)
Q Consensus 305 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 384 (405)
-..|..-+.+++..+++++-.++-+... ++.-|.....+|.+.|+.++|.+++-+.-.. .....+
T Consensus 715 Kr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~a 779 (829)
T KOG2280|consen 715 KRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKA 779 (829)
T ss_pred hhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHH
Confidence 7777777888888888887777655443 2445666777888888888888877654321 145667
Q ss_pred HHccCchhHHHHHH
Q 035749 385 CIRNNETSKVVELL 398 (405)
Q Consensus 385 ~~~~g~~~~a~~~~ 398 (405)
|.+.|++.+|.++-
T Consensus 780 y~~~~~~~eAad~A 793 (829)
T KOG2280|consen 780 YLRVGDVKEAADLA 793 (829)
T ss_pred HHHhccHHHHHHHH
Confidence 77777777776654
No 198
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.77 E-value=3.1e-05 Score=39.04 Aligned_cols=29 Identities=24% Similarity=0.518 Sum_probs=27.7
Q ss_pred HHHHHHHHHHccCchhHHHHHHHHhhhcC
Q 035749 377 AFNTLMLGCIRNNETSKVVELLHRMDERN 405 (405)
Q Consensus 377 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 405 (405)
+|+.++.+|.+.|++++|.+++++|.++|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 79999999999999999999999999876
No 199
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.73 E-value=0.0034 Score=45.83 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=19.4
Q ss_pred hHHHHHH---HHHHhcCchHHHHHHHHHHHcCC
Q 035749 20 ITYSTLI---NGLCRTGHTIVALNLFEEMINGN 49 (405)
Q Consensus 20 ~~~~~l~---~~~~~~~~~~~A~~~~~~~~~~~ 49 (405)
..|..++ ......++.+.+...++++....
T Consensus 4 ~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly 36 (146)
T PF03704_consen 4 DRFEALVREARAAARAGDPEEAIELLEEALALY 36 (146)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 3444443 33456788899999999988765
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.73 E-value=0.0014 Score=52.67 Aligned_cols=99 Identities=11% Similarity=0.026 Sum_probs=61.8
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCChHHHH
Q 035749 22 YSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKN--INPDVVTYN 99 (405)
Q Consensus 22 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~ 99 (405)
|...+....+.|++++|+..|+.+++..+.. +-.+.++..+...|...|++++|...|+.+.+.. .+.....+.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s----~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDS----TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 4444444456677777777777777765210 1113566777777777777777777777776542 112244455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 100 SVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
.++.++...|+.++|..+|+.+++.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5566666777777777777777665
No 201
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.73 E-value=0.019 Score=47.57 Aligned_cols=279 Identities=10% Similarity=0.066 Sum_probs=129.4
Q ss_pred cCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHH--HHhcCChHHHHHHHHHHHhCCCCCChHHHHH----HHHHH
Q 035749 32 TGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDG--LCKEGFVDKAKELLLQMKDKNINPDVVTYNS----VIRGF 105 (405)
Q Consensus 32 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~ 105 (405)
.||-..|.++-.+.... +..|...+..++.+ -.-.|+++.|.+-|+.|.. |+.+-.. |.-..
T Consensus 97 AGda~lARkmt~~~~~l-------lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleA 164 (531)
T COG3898 97 AGDASLARKMTARASKL-------LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEA 164 (531)
T ss_pred cCchHHHHHHHHHHHhh-------hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHH
Confidence 45555565555554322 22333333333332 2335677777777776664 2232222 22222
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC-CCCCHHH--HHHHHHH---HHccC
Q 035749 106 CYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIG-VRPNAFV--YNTLMDG---FCLTG 179 (405)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~---~~~~~ 179 (405)
-+.|+.+.|.++-+..-..-.. -...+...+...+..|+|+.|+++++.-.+.. +.++..- -..|+.+ -.-..
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 3556666666665555443222 34555666666666777777777666554432 2222211 1111111 01112
Q ss_pred CHHHHHHHHHHHHhcCCCCChh-hHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHH
Q 035749 180 RVNRAKELFVSMESMGCKHNVF-SYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLF 258 (405)
Q Consensus 180 ~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 258 (405)
+...|...-.+..+. .|+.. .--.-..++.+.|+..++-.+++.+-+....|+.. .+....+.|+ .+..-+
T Consensus 244 dp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gd--ta~dRl 315 (531)
T COG3898 244 DPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGD--TALDRL 315 (531)
T ss_pred ChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCC--cHHHHH
Confidence 344444444444333 23321 22233455666666666666666666654333321 1112233333 222222
Q ss_pred HHHHHc-CC-CccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc-CCHHHHHHHHhhccC
Q 035749 259 DEMQRH-GV-AADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKS-GRLKIAWELFHSLPR 333 (405)
Q Consensus 259 ~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 333 (405)
++..+. .. +.+......+..+-...|++..|..--+..... .|....|..|...-... |+-.++...+.+..+
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 222110 01 223444455555556666666665555554433 45555555555554333 666666666655544
No 202
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.72 E-value=8.4e-05 Score=47.44 Aligned_cols=70 Identities=17% Similarity=0.162 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 035749 19 VITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKD 88 (405)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 88 (405)
..+|+.+...|...|++++|++.|+++++.....+...+....++..+..++...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3578999999999999999999999988652111111112366889999999999999999999988754
No 203
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.68 E-value=0.024 Score=47.61 Aligned_cols=168 Identities=13% Similarity=0.009 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCccHhhHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 035749 96 VTYNSVIRGFCYANDSNEAKRLFIEMMDQG---VQPNVVTFSVIMDELCK---NGKMEEASQLLELMIQIGVRPNAFVYN 169 (405)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~ 169 (405)
.+...++-+|....+++..+++.+.+.... +.-+...-...+-++.+ .|+.++|.+++..+......+++.++.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 333445555666666666666666665431 11122222233344445 666777777766654444456666666
Q ss_pred HHHHHHHc---------cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCCh----HHHHHHH---HH-HHhCC--
Q 035749 170 TLMDGFCL---------TGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEI----EGALSLY---SE-MLSKG-- 230 (405)
Q Consensus 170 ~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~---~~-~~~~~-- 230 (405)
.+.+.|-. ....++|...|.+.-+.. ++...=-.++..+.-.|.. .+..++- .. +.+.|
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 55554421 123667777777665542 3332222222222222221 1222222 11 11222
Q ss_pred -CCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcC
Q 035749 231 -IKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHG 265 (405)
Q Consensus 231 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 265 (405)
-..+.-.+..++.++.-.|+.++|.+..++|.+..
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 23344555667777788888888888888888763
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.68 E-value=0.00093 Score=53.63 Aligned_cols=98 Identities=13% Similarity=0.002 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHhhccCCCc--CccHHHHHH
Q 035749 271 WAYRTFIDGLCKNGYIVEALELFRTLRILKCELD---IRSYSCLIDGLCKSGRLKIAWELFHSLPRGVL--IADVVTYNI 345 (405)
Q Consensus 271 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ 345 (405)
..|...+....+.|++++|...|+.+.... |-+ ..++..++.+|...|++++|...|+.+.+... +.....+..
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY-PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 345555555566799999999999998764 222 35788889999999999999999998875421 113455666
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 346 MIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 346 l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
++.++...|++++|..+|+++++.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 677788899999999999999885
No 205
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.66 E-value=0.016 Score=44.92 Aligned_cols=56 Identities=20% Similarity=0.135 Sum_probs=22.8
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 035749 138 DELCKNGKMEEASQLLELMIQIG--VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMES 193 (405)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (405)
..+...|++.+|...|+.+...- .+--......++.++.+.|+++.|...++...+
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444455555555555444431 011122233344444455555555555554444
No 206
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.64 E-value=0.0022 Score=48.46 Aligned_cols=100 Identities=21% Similarity=0.249 Sum_probs=57.1
Q ss_pred CccHHHHHHHHHHHhc-----CCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHH
Q 035749 267 AADTWAYRTFIDGLCK-----NGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVV 341 (405)
Q Consensus 267 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 341 (405)
..+..+|..+++.+.+ .|..+=....+..|.+.|+.-|..+|+.|+..+=+ |.+- |. .
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~-n 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PR-N 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cc-c
Confidence 3466667777766653 35566666666777777777777777777665432 1111 10 0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 035749 342 TYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGC 385 (405)
Q Consensus 342 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 385 (405)
.+..+..- .-.+-+-|++++++|...|+-||..++..++..+
T Consensus 107 ~fQ~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iF 148 (228)
T PF06239_consen 107 FFQAEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIF 148 (228)
T ss_pred HHHHHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHh
Confidence 01111100 1123355677777777777777777777777766
No 207
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.62 E-value=0.045 Score=49.04 Aligned_cols=64 Identities=19% Similarity=0.250 Sum_probs=39.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhhccCC-CcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 035749 304 DIRSYSCLIDGLCKSGRLKIAWELFHSLPRG-VLIADVVTYNIMIHALCADGKMDKAHDLFLDME 367 (405)
Q Consensus 304 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 367 (405)
....+..+++-....|..+.|+..--.+.+. .+.|....|..+.-+-+....+...-+.|-++.
T Consensus 1020 EAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1020 EAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 3445666666677788888887755444432 245677888877766665555554444444443
No 208
>PRK15331 chaperone protein SicA; Provisional
Probab=97.61 E-value=0.0022 Score=46.38 Aligned_cols=118 Identities=15% Similarity=0.037 Sum_probs=83.7
Q ss_pred cHHHHHHHHHHHHHcCCCc------cHHH---HHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC
Q 035749 250 QVERAFKLFDEMQRHGVAA------DTWA---YRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGR 320 (405)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~------~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 320 (405)
+.++..+.+..++..|..+ +..+ +....--+...|++++|..+|+-+...+ +.+..-+..|+.++-..++
T Consensus 8 ~~~~~~~~i~~al~~G~tlk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~ 86 (165)
T PRK15331 8 SEERVAEMIWDAVSEGATLKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQ 86 (165)
T ss_pred hHHHHHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHH
Confidence 4445555555555544322 1222 2233444567899999999999988766 5677778889999999999
Q ss_pred HHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 321 LKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 321 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
+++|...|........ -|+..+-....++...|+.+.|+..|....+.
T Consensus 87 y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 87 FQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 9999999877544322 24455666888999999999999999998874
No 209
>PRK15331 chaperone protein SicA; Provisional
Probab=97.59 E-value=0.0076 Score=43.67 Aligned_cols=118 Identities=10% Similarity=-0.036 Sum_probs=86.1
Q ss_pred ChHHHHHHHHHHHhCCCCC------chhhH---HHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCC
Q 035749 215 EIEGALSLYSEMLSKGIKP------TVVTY---NTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGY 285 (405)
Q Consensus 215 ~~~~a~~~~~~~~~~~~~~------~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 285 (405)
+.++..+.+.+++..|..+ +..+. -....-+...|++++|..+|.-+...+ +.+..-+..+..++-..++
T Consensus 8 ~~~~~~~~i~~al~~G~tlk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~ 86 (165)
T PRK15331 8 SEERVAEMIWDAVSEGATLKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQ 86 (165)
T ss_pred hHHHHHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHH
Confidence 4445555555556654322 11122 223334568899999999999888765 5567777788888888999
Q ss_pred hHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCC
Q 035749 286 IVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRG 334 (405)
Q Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 334 (405)
+++|...|......+ ..|+..+...+.++...|+.+.|...|..+.+.
T Consensus 87 y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 87 FQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 999999999887665 456666778899999999999999999988773
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.56 E-value=0.00075 Score=42.31 Aligned_cols=56 Identities=16% Similarity=0.095 Sum_probs=39.1
Q ss_pred HHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 035749 27 NGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK 89 (405)
Q Consensus 27 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (405)
..|.+.+++++|++.++.+++.+ |.++..+.....++.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-------PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-------cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45667777777777777777764 456666777777777777777777777777665
No 211
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.50 E-value=0.0023 Score=48.36 Aligned_cols=71 Identities=21% Similarity=0.296 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhh----------------cCChHHHHHHHHHHHhCCCCCchhhHHHHH
Q 035749 179 GRVNRAKELFVSMESMGCKHNVFSYSILINGYCK----------------NKEIEGALSLYSEMLSKGIKPTVVTYNTLF 242 (405)
Q Consensus 179 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 242 (405)
|..+-....++.|.+.|+..|..+|+.|+..+=+ -.+-+-|++++++|...|+-||..++..++
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll 145 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLL 145 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 3344444444445555555555555555444322 122344556666666666666666666666
Q ss_pred HHHHccc
Q 035749 243 IGLFEIH 249 (405)
Q Consensus 243 ~~~~~~~ 249 (405)
..+.+.+
T Consensus 146 ~iFG~~s 152 (228)
T PF06239_consen 146 NIFGRKS 152 (228)
T ss_pred HHhcccc
Confidence 6555444
No 212
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.49 E-value=0.049 Score=46.20 Aligned_cols=114 Identities=17% Similarity=0.160 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHhcCCCccHHHHHHHH----HHHHh---cCCHHHHHHHHhhccCCCcCc----cHHHHHHHHH--HHHc
Q 035749 286 IVEALELFRTLRILKCELDIRSYSCLI----DGLCK---SGRLKIAWELFHSLPRGVLIA----DVVTYNIMIH--ALCA 352 (405)
Q Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~--~~~~ 352 (405)
-++|+.+++.+.+.. +-|...-+.+. .+|.. ...+..-..+-+-+.+.|+.| +...-|-|.. .+..
T Consensus 396 dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys 474 (549)
T PF07079_consen 396 DEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS 474 (549)
T ss_pred cHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh
Confidence 667777777776543 33333322222 12221 122333333333334444443 2333344433 3456
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhh
Q 035749 353 DGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMD 402 (405)
Q Consensus 353 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 402 (405)
+|++.++.-.-.-+.+ +.|++.+|..++.+.....++++|..++..+.
T Consensus 475 qgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred cccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 7888877766555555 57788888888888888888888888877653
No 213
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.49 E-value=0.042 Score=46.20 Aligned_cols=166 Identities=13% Similarity=0.023 Sum_probs=102.8
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHhCC---CCCchhhHHHHHHHHHc---cccHHHHHHHHHHHHHcCCCccHHHHHH
Q 035749 202 SYSILINGYCKNKEIEGALSLYSEMLSKG---IKPTVVTYNTLFIGLFE---IHQVERAFKLFDEMQRHGVAADTWAYRT 275 (405)
Q Consensus 202 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 275 (405)
+...++-+|....+++..+++.+.+.... +.-....-.....++.+ .|+.++|..++..+......+++.++..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 34455557888899999999999987752 11122222234445566 8899999999998666556788889988
Q ss_pred HHHHHhc---------CCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC-HH---HHHHHH---hh-ccCCCcC-
Q 035749 276 FIDGLCK---------NGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGR-LK---IAWELF---HS-LPRGVLI- 337 (405)
Q Consensus 276 l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~---~a~~~~---~~-~~~~~~~- 337 (405)
+...|-. ....++|...|.+.-+.. |+...--.++..+...|. ++ +..++- .. +.+.|..
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 8877642 224677788887776553 444433333333444443 22 233333 11 1122221
Q ss_pred --ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 338 --ADVVTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 338 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
.+--.+..++.++.-.|++++|.+..++|...
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 23333456677788889999999999998876
No 214
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.47 E-value=0.066 Score=47.11 Aligned_cols=369 Identities=10% Similarity=0.006 Sum_probs=201.4
Q ss_pred HhHHHHHHhhcCCCCCh-hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHh-cCChHHHH
Q 035749 3 AAALFTKLKAFGCEPNV-ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCK-EGFVDKAK 80 (405)
Q Consensus 3 A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~ 80 (405)
+..++..++.. .|-. .-|......-.+.|..+.+.++|++.++. ++.+...|......+.. .|+.+...
T Consensus 64 ~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-------ip~SvdlW~~Y~~f~~n~~~d~~~lr 134 (577)
T KOG1258|consen 64 LREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-------IPLSVDLWLSYLAFLKNNNGDPETLR 134 (577)
T ss_pred HHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-------hhhHHHHHHHHHHHHhccCCCHHHHH
Confidence 34555555544 3443 36777777778888888888888888875 46677777776665554 57777788
Q ss_pred HHHHHHHhC-CC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHH---Hc------CCCHHHH
Q 035749 81 ELLLQMKDK-NI-NPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDEL---CK------NGKMEEA 149 (405)
Q Consensus 81 ~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~------~~~~~~a 149 (405)
+.|+..... |. -.+...|...|..-..++++.....+|++.++.. ...++....-| .+ ....+++
T Consensus 135 ~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~l~~~~~~~l~~~d~~ 210 (577)
T KOG1258|consen 135 DLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQLLNQNEEKILLSIDEL 210 (577)
T ss_pred HHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHHhcCChhhhcCHHHH
Confidence 888877654 21 1245667777777777888888888888887641 11111111111 11 1123333
Q ss_pred HHHHHHHHH--------------------cCCCCCHH--HHHHHHH-------HHHccCCHHHHHHHHHHHHhcC---C-
Q 035749 150 SQLLELMIQ--------------------IGVRPNAF--VYNTLMD-------GFCLTGRVNRAKELFVSMESMG---C- 196 (405)
Q Consensus 150 ~~~~~~~~~--------------------~~~~~~~~--~~~~l~~-------~~~~~~~~~~a~~~~~~~~~~~---~- 196 (405)
.++-..... .+.+.+.. ....+.. ++...-...+....++.-.... +
T Consensus 211 ~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvk 290 (577)
T KOG1258|consen 211 IQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVK 290 (577)
T ss_pred HHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccC
Confidence 333222221 00000000 0011111 1111111222222222222211 1
Q ss_pred ---CCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHH
Q 035749 197 ---KHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAY 273 (405)
Q Consensus 197 ---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 273 (405)
+++...|...+..-...|+.+.+.-+|+...-.--.-+ ..|-..+.-....|+.+-|..++....+-..+..+.+-
T Consensus 291 pl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~-efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~ 369 (577)
T KOG1258|consen 291 PLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYD-EFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIH 369 (577)
T ss_pred cccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhH-HHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHH
Confidence 12345677777777888999998888888764210111 12222333333448888888887776665433333322
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHH---HHHhhccCCCcCccHHHHHHHHH--
Q 035749 274 RTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAW---ELFHSLPRGVLIADVVTYNIMIH-- 348 (405)
Q Consensus 274 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~l~~-- 348 (405)
-.-.......|++..|..+++.+...- +--..+-..-+....+.|+.+.+. .++........ +......+..
T Consensus 370 L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~ 446 (577)
T KOG1258|consen 370 LLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKF 446 (577)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHH
Confidence 222333445689999999999988764 323333333344556677777776 44443333211 1122222221
Q ss_pred ---HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 035749 349 ---ALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNN 389 (405)
Q Consensus 349 ---~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 389 (405)
.+.-.++.+.|..++.++.+. ++++...|..++..+...+
T Consensus 447 ~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 447 ARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 123467888999999999887 6777777877777665544
No 215
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.45 E-value=0.032 Score=49.44 Aligned_cols=54 Identities=13% Similarity=-0.009 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 035749 236 VTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRI 298 (405)
Q Consensus 236 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 298 (405)
.+...+...+-+...+..|.++|..|-.. ..+++.....++|++|..+-+...+
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 33444444444555566666666655321 2456666777778777777665543
No 216
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.44 E-value=0.0019 Score=47.11 Aligned_cols=74 Identities=19% Similarity=0.240 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCccHhhHH
Q 035749 60 AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMD-----QGVQPNVVTFS 134 (405)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 134 (405)
..+...++..+...|++++|..+.+.+.... |.+...|..++.++...|+...|.+.|+.+.+ .|+.|+..+-.
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 4577788888889999999999999998876 78899999999999999999999999988754 48888876643
No 217
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.41 E-value=0.00041 Score=44.25 Aligned_cols=60 Identities=20% Similarity=0.275 Sum_probs=27.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhC--CCC---CC-HHHHHHHHHHHHccCchhHHHHHHHHh
Q 035749 342 TYNIMIHALCADGKMDKAHDLFLDMEAK--GVA---PD-CVAFNTLMLGCIRNNETSKVVELLHRM 401 (405)
Q Consensus 342 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 401 (405)
+++.+...|...|++++|+..|++..+. ... |+ ..++..+..++...|++++|.+++++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444455555555555555555544422 001 11 223444455555555555555555544
No 218
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.32 E-value=0.039 Score=48.94 Aligned_cols=90 Identities=18% Similarity=0.124 Sum_probs=61.5
Q ss_pred cHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHH-------
Q 035749 269 DTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVV------- 341 (405)
Q Consensus 269 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------- 341 (405)
+..++..+..-+.+...+..|-++|..+-.. ..+++.....+++++|..+-++..+. .||+.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWL 814 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHh
Confidence 3445555555666677778888888876432 34566778889999999988887763 33321
Q ss_pred ----HHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 342 ----TYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 342 ----~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
-|...-.+|.+.|+..+|.++++++...
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 2344556777888888888888887654
No 219
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.31 E-value=0.0026 Score=39.84 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=18.6
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 035749 142 KNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSME 192 (405)
Q Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 192 (405)
+.+++++|.++++.+...+ |.+...+.....++...|++++|...++...
T Consensus 7 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 7 QQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred hCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3333333333333333332 2233333333333333333333333333333
No 220
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.28 E-value=0.028 Score=49.81 Aligned_cols=167 Identities=17% Similarity=0.148 Sum_probs=92.2
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCChHHH
Q 035749 23 STLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCK----EGFVDKAKELLLQMKDKNINPDVVTY 98 (405)
Q Consensus 23 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (405)
..++...+=.||-+.+++.+.+..+..+-.+.....-.-.|+..+..++. ....+.|.++++.+.++ -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 44555666778888999998888765421110000011233444433333 34566778888877766 3444444
Q ss_pred H-HHHHHHHhcCCHHHHHHHHHHHHHCC---CCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-H
Q 035749 99 N-SVIRGFCYANDSNEAKRLFIEMMDQG---VQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLM-D 173 (405)
Q Consensus 99 ~-~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~ 173 (405)
. .-.+.+...|++++|++.|+...... .+.....+-.++.++.-.++|++|...+..+.+.+ ..+..+|..+. .
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 3 33455667788888888888655321 11122233445555666777777777777777654 33344443332 3
Q ss_pred HHHccCCH-------HHHHHHHHHHH
Q 035749 174 GFCLTGRV-------NRAKELFVSME 192 (405)
Q Consensus 174 ~~~~~~~~-------~~a~~~~~~~~ 192 (405)
++...++. ++|.+++.++.
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHH
Confidence 44455555 55555555543
No 221
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.25 E-value=0.0075 Score=51.34 Aligned_cols=67 Identities=18% Similarity=0.014 Sum_probs=50.9
Q ss_pred CCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccH---HHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 035749 16 EPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDA---VIYTTIIDGLCKEGFVDKAKELLLQMKDK 89 (405)
Q Consensus 16 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (405)
+.+...|+.+..+|...|++++|+..|+++++.+ |.+. .+|..+..+|...|+.++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-------Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-------PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456678888888888888888888888888765 2223 35888888888888888888888888764
No 222
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.07 Score=42.69 Aligned_cols=122 Identities=16% Similarity=0.135 Sum_probs=58.1
Q ss_pred HHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHh
Q 035749 28 GLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCY 107 (405)
Q Consensus 28 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 107 (405)
.....|++.+|..+|..+.+.. +.+...-..+++++...|+.+.|..++..+....-.........-+..+.+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q 215 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ 215 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence 4455666666666666666654 334555666666666666666666666665443111111111112222333
Q ss_pred cCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 035749 108 ANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQ 158 (405)
Q Consensus 108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 158 (405)
.....+...+-..+-.. +-|...-..+...+...|+.+.|.+.+-.+.+
T Consensus 216 aa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 216 AAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333322222222221 11444444555555556666665555544443
No 223
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.066 Score=41.96 Aligned_cols=131 Identities=13% Similarity=0.028 Sum_probs=91.6
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCc-----cHHHHHHHH
Q 035749 238 YNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCEL-----DIRSYSCLI 312 (405)
Q Consensus 238 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~ 312 (405)
.+.++..+.-.+.+.-....+.++++...+.++.....+++.-.+.||.+.|...|++..+..-.. ...+.....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 345556666677788888888888877666777788888888888888888888888665432222 233333444
Q ss_pred HHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 313 DGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 313 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
..|.-.+++.+|...+.++..... .++...|.-.-+..-.|+..+|++.++.|...
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456667788888888887776532 25555666666666788888888888888875
No 224
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.15 E-value=0.11 Score=43.22 Aligned_cols=105 Identities=20% Similarity=0.158 Sum_probs=47.8
Q ss_pred HHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc
Q 035749 239 NTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKS 318 (405)
Q Consensus 239 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (405)
+..+.-+...|+...|.++-.+.. .|+...|...+.+++..++|++-..+... . -++.-|..++.+|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHC
Confidence 333444444555544444433331 34555555555555555555554443221 1 1122344445555555
Q ss_pred CCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHH
Q 035749 319 GRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLF 363 (405)
Q Consensus 319 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 363 (405)
|+..+|..+..++. +..-+..|.+.|++.+|.+.-
T Consensus 251 ~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 251 GNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHH
Confidence 55555555554421 122334445555555555443
No 225
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.10 E-value=0.1 Score=46.35 Aligned_cols=161 Identities=13% Similarity=0.018 Sum_probs=88.7
Q ss_pred HHHHHHHHccccHHHHHHHHHHHHHcCCCccHH------HHHHHHHHHh----cCCChHHHHHHHHHHHhcCCCccHHH-
Q 035749 239 NTLFIGLFEIHQVERAFKLFDEMQRHGVAADTW------AYRTFIDGLC----KNGYIVEALELFRTLRILKCELDIRS- 307 (405)
Q Consensus 239 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~- 307 (405)
..++....-.||-+.+++.+....+.+---.+. .|..++..++ ...+.+.|.+++..+... -|+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 344555555566666666666655432111111 1111222221 245667777777777765 244333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhccCCC---cCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-
Q 035749 308 YSCLIDGLCKSGRLKIAWELFHSLPRGV---LIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLML- 383 (405)
Q Consensus 308 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~- 383 (405)
...-.+.+...|++++|.+.|++..... .......+--++.++...++|++|...|..+.+.. ..+..+|..+.-
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 3344566677788888888887654311 11123344456666777788888888888887752 334555555443
Q ss_pred HHHccCch-------hHHHHHHHHhh
Q 035749 384 GCIRNNET-------SKVVELLHRMD 402 (405)
Q Consensus 384 ~~~~~g~~-------~~a~~~~~~~~ 402 (405)
++...|+. ++|.+++.+..
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHH
Confidence 33456666 66666666553
No 226
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.10 E-value=0.14 Score=43.52 Aligned_cols=340 Identities=13% Similarity=0.134 Sum_probs=188.2
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHcCCCCCccccc----ccHHHHHHHHHHHHhcC--------C-------hHHHHHHH
Q 035749 23 STLINGLCRTGHTIVALNLFEEMINGNGEFGVVCK----PDAVIYTTIIDGLCKEG--------F-------VDKAKELL 83 (405)
Q Consensus 23 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~--------~-------~~~a~~~~ 83 (405)
+..++.+...|++.+++.+++++...- .+ -+.++|+.++-.+.++- . ++.++-..
T Consensus 132 ~i~a~sLIe~g~f~EgR~iLn~i~~~l------lkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~ 205 (549)
T PF07079_consen 132 EIEAHSLIETGRFSEGRAILNRIIERL------LKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYL 205 (549)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHH------hhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHH
Confidence 455778889999999999999987664 33 57888988766655431 1 11222222
Q ss_pred HHHHhC------CCCCChHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCccHhhH-HHHHHHHHcCCCHHHHHHHHH
Q 035749 84 LQMKDK------NINPDVVTYNSVIRGFCYA--NDSNEAKRLFIEMMDQGVQPNVVTF-SVIMDELCKNGKMEEASQLLE 154 (405)
Q Consensus 84 ~~~~~~------~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~ 154 (405)
.++... .+-|.......++....-. .+..--.++++.....-+.|+.... ..+...+.+ +.+++..+.+
T Consensus 206 kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce 283 (549)
T PF07079_consen 206 KKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCE 283 (549)
T ss_pred HHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHH
Confidence 222211 1122222233333222211 1112222333333333344543322 223333333 6666666666
Q ss_pred HHHHcCCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHH-------HHHHHHhh----cCChHHH
Q 035749 155 LMIQIGVRP----NAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYS-------ILINGYCK----NKEIEGA 219 (405)
Q Consensus 155 ~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~----~~~~~~a 219 (405)
.+....+.+ -..+|..++....+.++...|.+.+.-+.... |+...-. .+-+..+. .-+..+=
T Consensus 284 ~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~y 361 (549)
T PF07079_consen 284 AIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDY 361 (549)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHH
Confidence 655442111 24567788888899999999999888877653 3322111 12222221 1123334
Q ss_pred HHHHHHHHhCCCCCchhhHHHHH---HHHHcccc-HHHHHHHHHHHHHcCCCccHHHHHHHH----HHHh---cCCChHH
Q 035749 220 LSLYSEMLSKGIKPTVVTYNTLF---IGLFEIHQ-VERAFKLFDEMQRHGVAADTWAYRTFI----DGLC---KNGYIVE 288 (405)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~---~~~~~~~ 288 (405)
+.+|+.+...++... .....++ .-+-+.|. -++|+.+++.+++-. +-|...-+.+. ..|. ....+.+
T Consensus 362 L~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~r 439 (549)
T PF07079_consen 362 LNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPR 439 (549)
T ss_pred HHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 555655555433211 1112222 23344555 889999999888742 33333322222 2332 2344566
Q ss_pred HHHHHHHHHhcCCCcc----HHHHHHHHHH--HHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHH
Q 035749 289 ALELFRTLRILKCELD----IRSYSCLIDG--LCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDL 362 (405)
Q Consensus 289 a~~~~~~~~~~~~~~~----~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 362 (405)
-..+-+-+.+.|++|- ...-+.+..+ +...|++.++.-.-.-+.+ +.|++.+|..++-+.....++++|..+
T Consensus 440 LlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~ 517 (549)
T PF07079_consen 440 LLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEY 517 (549)
T ss_pred HHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 6666666677776653 3334444433 5678999998765544444 578999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHH
Q 035749 363 FLDMEAKGVAPDCVAFNTL 381 (405)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~l 381 (405)
+.. ++|+..++.+-
T Consensus 518 l~~-----LP~n~~~~dsk 531 (549)
T PF07079_consen 518 LQK-----LPPNERMRDSK 531 (549)
T ss_pred HHh-----CCCchhhHHHH
Confidence 876 46677766543
No 227
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.09 E-value=0.027 Score=39.45 Aligned_cols=89 Identities=12% Similarity=0.059 Sum_probs=60.6
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCC---------CCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNG---------EFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKD 88 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 88 (405)
|..++..++.++++.|+.+....+.+..-..+. ..+....|+..+..+++.+++..|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 456789999999999999999999987654331 11222456666777777777777777777777766654
Q ss_pred C-CCCCChHHHHHHHHHHH
Q 035749 89 K-NINPDVVTYNSVIRGFC 106 (405)
Q Consensus 89 ~-~~~~~~~~~~~l~~~~~ 106 (405)
. +++.+..+|..|+.-..
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HcCCCCCHHHHHHHHHHHH
Confidence 3 45555666666665443
No 228
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.067 Score=42.80 Aligned_cols=154 Identities=16% Similarity=0.084 Sum_probs=99.8
Q ss_pred HHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCH
Q 035749 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRL 321 (405)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 321 (405)
.......|++..|...|....... +-+......+..+|...|+.+.|..++..+....-.........-+..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 345678899999999999988764 4456777788899999999999999998875432112222222223344444444
Q ss_pred HHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHccCchhHHHHHH
Q 035749 322 KIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGV-APDCVAFNTLMLGCIRNNETSKVVELL 398 (405)
Q Consensus 322 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~ 398 (405)
.+...+-.+.-.. +.|...-..+...+...|+.++|.+.+-.++.++. .-|...-..++..+.-.|..+.+...+
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAY 295 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence 4333333333332 22667777788889999999999988877766522 224555667777777777544444333
No 229
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.05 E-value=0.016 Score=45.68 Aligned_cols=97 Identities=18% Similarity=0.118 Sum_probs=60.7
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhcCC--CccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcC-c-cHHHHHHHH
Q 035749 272 AYRTFIDGLCKNGYIVEALELFRTLRILKC--ELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLI-A-DVVTYNIMI 347 (405)
Q Consensus 272 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~ 347 (405)
.|+.-+.. .+.|++..|...|...++... .-....+..|+.++...|++++|..+|..+.+.... | -+.++--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45444443 345667777777777766531 123345666777777777777777777666543211 1 235566666
Q ss_pred HHHHcCCCHHHHHHHHHHHHhC
Q 035749 348 HALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 348 ~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
.+..+.|+.++|...|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7777777777777777777765
No 230
>PRK11906 transcriptional regulator; Provisional
Probab=97.04 E-value=0.093 Score=45.09 Aligned_cols=81 Identities=15% Similarity=-0.011 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHH
Q 035749 36 IVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAK 115 (405)
Q Consensus 36 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 115 (405)
.+|.++-+++.+.+ +.|+.+...+..+..-.++++.|..+|++....+ |....+|......+.-.|+.++|.
T Consensus 321 ~~a~~~A~rAveld-------~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~ 392 (458)
T PRK11906 321 QKALELLDYVSDIT-------TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEAR 392 (458)
T ss_pred HHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 35555666666554 4455555555555555555666666666665543 333444444444455566666666
Q ss_pred HHHHHHHHC
Q 035749 116 RLFIEMMDQ 124 (405)
Q Consensus 116 ~~~~~~~~~ 124 (405)
+.+++..+.
T Consensus 393 ~~i~~alrL 401 (458)
T PRK11906 393 ICIDKSLQL 401 (458)
T ss_pred HHHHHHhcc
Confidence 666665443
No 231
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.027 Score=46.96 Aligned_cols=92 Identities=14% Similarity=0.034 Sum_probs=43.4
Q ss_pred HHHHhhcCChHHHHHHHHHHHhC-----CCCC---------chhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHH
Q 035749 207 INGYCKNKEIEGALSLYSEMLSK-----GIKP---------TVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWA 272 (405)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~~~-----~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 272 (405)
.+.|.+.|++..|...|++++.. +.++ -..++..+..++.+.+++..|+..-...+..+ ++|...
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 34566666777666666665442 0000 11223334444444444444444444444443 344444
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhc
Q 035749 273 YRTFIDGLCKNGYIVEALELFRTLRIL 299 (405)
Q Consensus 273 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 299 (405)
+..-..++...|+++.|+..|+++.+.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 444444444444555555554444443
No 232
>PRK11906 transcriptional regulator; Provisional
Probab=97.01 E-value=0.19 Score=43.31 Aligned_cols=161 Identities=16% Similarity=0.116 Sum_probs=98.6
Q ss_pred hHH--HHHHHHHHhc-----CchHHHHHHHHHHH---cCCCCCcccccccHHHHHHHHHHHHhc---------CChHHHH
Q 035749 20 ITY--STLINGLCRT-----GHTIVALNLFEEMI---NGNGEFGVVCKPDAVIYTTIIDGLCKE---------GFVDKAK 80 (405)
Q Consensus 20 ~~~--~~l~~~~~~~-----~~~~~A~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~ 80 (405)
..| ..++++.... -..+.|+.+|.++. +.+ |.....|..+..++... ....+|.
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ld-------p~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~ 324 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQ-------TLKTECYCLLAECHMSLALHGKSELELAAQKAL 324 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCC-------cccHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 456 5555555442 23457899999998 544 23355565555544422 2344666
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 035749 81 ELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIG 160 (405)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (405)
++-++..+.+ +.|+.+...+..+....++++.|..+|++....++. ...+|......+.-.|+.++|.+.+++..+..
T Consensus 325 ~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs 402 (458)
T PRK11906 325 ELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLE 402 (458)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 7777777765 567777777777777778888888888888776433 44555555666667788888888888876653
Q ss_pred C-CCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 035749 161 V-RPNAFVYNTLMDGFCLTGRVNRAKELFVS 190 (405)
Q Consensus 161 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 190 (405)
. +....+....+..|+.. ..+.++++|-+
T Consensus 403 P~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 403 PRRRKAVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred chhhHHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 1 11122223334445443 35556665544
No 233
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.032 Score=46.58 Aligned_cols=91 Identities=10% Similarity=0.043 Sum_probs=54.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC-----CCC---------ccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 035749 103 RGFCYANDSNEAKRLFIEMMDQ-----GVQ---------PNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVY 168 (405)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~-----~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 168 (405)
..+.+.|++..|...|++.... +.+ .-..++..++.++.+.+++..|++..++.+..+ +.+....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 4466777777777777765432 011 112234555556666666666666666666664 5555555
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhc
Q 035749 169 NTLMDGFCLTGRVNRAKELFVSMESM 194 (405)
Q Consensus 169 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (405)
..-..++...|+++.|+..|+++.+.
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 55666666666666666666666665
No 234
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.91 E-value=0.057 Score=46.26 Aligned_cols=66 Identities=15% Similarity=0.120 Sum_probs=57.0
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-h---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 57 KPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPD-V---VTYNSVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
|.+...++.+..+|.+.|++++|+..|++.++.+ |+ . .+|..+..+|...|+.++|+..+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567899999999999999999999999988874 44 3 35899999999999999999999999875
No 235
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.91 E-value=0.0039 Score=34.29 Aligned_cols=42 Identities=14% Similarity=0.196 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHH
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIID 68 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 68 (405)
.+|..+...|.+.|++++|+++|+++++.. |.++..+..+..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~-------P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD-------PDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------cCCHHHHHHhhh
Confidence 467889999999999999999999999986 567777776653
No 236
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.88 E-value=0.15 Score=40.11 Aligned_cols=62 Identities=13% Similarity=-0.021 Sum_probs=45.8
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 035749 24 TLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK 89 (405)
Q Consensus 24 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (405)
.-+....+.|++++|.+.|+.+..+.+- .+-...+...++.++.+.++++.|+..+++....
T Consensus 39 ~~g~~~L~~gn~~~A~~~fe~l~~~~p~----s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 39 NEGLTELQKGNYEEAIKYFEALDSRHPF----SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC----CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3444455788899999999888877642 1224567777888888888999998888888766
No 237
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.87 E-value=0.29 Score=43.30 Aligned_cols=134 Identities=11% Similarity=0.085 Sum_probs=96.8
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHH
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVT 97 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (405)
+...|..++.---...+.+.+..+++.++... |.-..-|......-.+.|..+.+..+|++.... ++.+...
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky-------Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~Svdl 115 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKY-------PLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDL 115 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhC-------ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHH
Confidence 34456666665555556677788888887653 445567788888888889999999999998864 6777777
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHHC-CCC-ccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 98 YNSVIRGFC-YANDSNEAKRLFIEMMDQ-GVQ-PNVVTFSVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 98 ~~~l~~~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
|......+. ..|+.+...+.|+..... |.. .+...|...+..-...+++.....+++++++.
T Consensus 116 W~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 116 WLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 776665444 446777777888887764 211 24456777777778888999999999998875
No 238
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.87 E-value=0.05 Score=43.03 Aligned_cols=99 Identities=12% Similarity=0.130 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCChHHH
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNI--NPDVVTY 98 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~ 98 (405)
.|+.-+. +...|++..|...|...++..+.. +-.+..+.-|.+++...|++++|..+|..+.+... +--+..+
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s----~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal 218 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNS----TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL 218 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCC----cccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence 4554444 346667777777777777776431 22345666677777777777777777777765421 1224566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 99 NSVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
.-|..+..+.|+.++|...|+++.+.
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 66777777777777777777777765
No 239
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.87 E-value=0.068 Score=36.88 Aligned_cols=92 Identities=16% Similarity=0.101 Sum_probs=56.0
Q ss_pred HHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh---HHHHHHHH
Q 035749 27 NGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDV---VTYNSVIR 103 (405)
Q Consensus 27 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~ 103 (405)
-++...|+.+.|++.|.+.+..- |..+..||.-.+++.-+|+.++|++-+++..+..-+.+. ..|..-..
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~-------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ 123 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLA-------PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGL 123 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhc-------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 34566677777777777776652 556677777777777777777777777766654222221 22333334
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC
Q 035749 104 GFCYANDSNEAKRLFIEMMDQG 125 (405)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~ 125 (405)
.|...|+.+.|..-|+..-+.|
T Consensus 124 lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 124 LYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHhCchHHHHHhHHHHHHhC
Confidence 4556666677766666665554
No 240
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.81 E-value=0.051 Score=38.08 Aligned_cols=97 Identities=14% Similarity=0.127 Sum_probs=59.5
Q ss_pred cHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHH
Q 035749 269 DTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIH 348 (405)
Q Consensus 269 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 348 (405)
|..++..++.++++.|+.+....+++..-..+ ++... ..+. .-......|+.....+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~--~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGID--VNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCC--CCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34566667777777777777666665543211 11100 0000 1223345677888888888
Q ss_pred HHHcCCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 035749 349 ALCADGKMDKAHDLFLDMEAK-GVAPDCVAFNTLMLGC 385 (405)
Q Consensus 349 ~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~ 385 (405)
+|+..|++..|+++++...+. +++.+..+|..|+.=+
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 888888888888888877765 6666677787777533
No 241
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.73 E-value=0.11 Score=36.97 Aligned_cols=67 Identities=9% Similarity=-0.054 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKN 90 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 90 (405)
..+..-.....+.|++++|++.|+.+..+.+. .+-...+-..++.++.+.++++.|...+++.++.+
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~----g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPF----GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC----CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 34444566667889999999999998887642 12245677788888999999999999999888774
No 242
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.71 E-value=0.1 Score=42.56 Aligned_cols=151 Identities=16% Similarity=0.077 Sum_probs=92.2
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhH----HHHHHHHHccccHH
Q 035749 177 LTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTY----NTLFIGLFEIHQVE 252 (405)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~ 252 (405)
..|+..+|-..++++.+.- |.|..++...-.+|.-.|+.+.-...++++... ..++...| ....-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 4566666666666666542 566667776677777777777777777776654 22333222 22333445677778
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC---CCccHHHHHHHHHHHHhcCCHHHHHHHHh
Q 035749 253 RAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILK---CELDIRSYSCLIDGLCKSGRLKIAWELFH 329 (405)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 329 (405)
+|.+.-++..+.+ +.|..........+...|+..++.++..+-...= .-.-...|-..+-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 8887777777665 5566666677777777777777777765543210 00111223344445566677788887776
Q ss_pred h
Q 035749 330 S 330 (405)
Q Consensus 330 ~ 330 (405)
.
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 5
No 243
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.70 E-value=0.32 Score=42.22 Aligned_cols=63 Identities=19% Similarity=0.159 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhccCCCcC-ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 035749 306 RSYSCLIDGLCKSGRLKIAWELFHSLPRGVLI-ADVVTYNIMIHALCADGKMDKAHDLFLDMEA 368 (405)
Q Consensus 306 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 368 (405)
.+-..+..++.+.|+.++|.+.++++.+.... ........|+.++...+.+.++..++.+.-+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 33344555556666666666666666543211 1233455566666666666666666666543
No 244
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.70 E-value=0.14 Score=44.76 Aligned_cols=130 Identities=18% Similarity=0.157 Sum_probs=65.9
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 035749 238 YNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCK 317 (405)
Q Consensus 238 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (405)
.+.++.-+.+.|-++.|+.+- .|+. .-+....+.|+++.|.++.+. ..+...|..|......
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~---------~D~~---~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFV---------TDPD---HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHS---------S-HH---HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhc---------CChH---HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHH
Confidence 445555555666666666552 2222 123334456666666554332 2345566666666666
Q ss_pred cCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHH
Q 035749 318 SGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVEL 397 (405)
Q Consensus 318 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 397 (405)
.|+++-|.+.|++..+ |..|+-.|.-.|+.+.-.++.+.....|- ++....++.-.|+.++..++
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~l 424 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDL 424 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHH
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHH
Confidence 6666666666665543 44455555666666665555555554431 23333344444555555555
Q ss_pred HHH
Q 035749 398 LHR 400 (405)
Q Consensus 398 ~~~ 400 (405)
+.+
T Consensus 425 L~~ 427 (443)
T PF04053_consen 425 LIE 427 (443)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 245
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.67 E-value=0.21 Score=38.86 Aligned_cols=28 Identities=7% Similarity=-0.062 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHc
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMIN 47 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 47 (405)
..|..-..+|....++++|..-+.++.+
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~ 59 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASK 59 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 4577777788888999999888888764
No 246
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.56 E-value=0.18 Score=44.21 Aligned_cols=156 Identities=16% Similarity=0.131 Sum_probs=88.6
Q ss_pred HHHhcCChHHHHHHHH--HHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCH
Q 035749 69 GLCKEGFVDKAKELLL--QMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKM 146 (405)
Q Consensus 69 ~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 146 (405)
...-.++++.+.++.. ++.. .+ +....+.++..+.+.|..+.|+++... .. .-.....+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCH
Confidence 3444677777666664 2221 11 245567777777777877777766432 21 223445567777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHH
Q 035749 147 EEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEM 226 (405)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 226 (405)
+.|.++.+. ..+...|..|.......|+++-|++.|.+..+ +..|+-.|...|+.+...++.+..
T Consensus 335 ~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 335 DIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 777765443 23566788888888888888888887776543 345666677777777777776666
Q ss_pred HhCCCCCchhhHHHHHHHHHccccHHHHHHHHHH
Q 035749 227 LSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDE 260 (405)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 260 (405)
...| -++....++.-.|+.++..+++.+
T Consensus 400 ~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 400 EERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6554 234445555666777777766654
No 247
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.55 E-value=0.16 Score=36.07 Aligned_cols=84 Identities=11% Similarity=0.029 Sum_probs=59.9
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHH
Q 035749 59 DAVIYTTIIDGLCKEGFVDKAKELLLQMKDKN--INPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVI 136 (405)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (405)
.+..+..-.....+.|++++|.+.|+.+..+- -+-...+...|+.+|.+.+++++|...+++.++..+.-....|...
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 34455555666778899999999999998762 1224566677889999999999999999999987544333445555
Q ss_pred HHHHHc
Q 035749 137 MDELCK 142 (405)
Q Consensus 137 ~~~~~~ 142 (405)
+.+++.
T Consensus 89 ~~gL~~ 94 (142)
T PF13512_consen 89 MRGLSY 94 (142)
T ss_pred HHHHHH
Confidence 555443
No 248
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.54 E-value=0.34 Score=39.79 Aligned_cols=62 Identities=11% Similarity=0.064 Sum_probs=35.1
Q ss_pred HHHHHHHHHHccCCHH---HHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 035749 167 VYNTLMDGFCLTGRVN---RAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK 229 (405)
Q Consensus 167 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (405)
+...++.+|...+..+ +|..+++.+.... +..+..+-.-+..+.+.++.+.+.+.+.+|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4555666666666543 3444454554332 223444445555566667777777777777765
No 249
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.53 E-value=0.12 Score=42.58 Aligned_cols=231 Identities=10% Similarity=0.063 Sum_probs=141.0
Q ss_pred HHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHH----HHHhCC-CCCChHHHHHHH
Q 035749 28 GLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLL----QMKDKN-INPDVVTYNSVI 102 (405)
Q Consensus 28 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~-~~~~~~~~~~l~ 102 (405)
-+.+..+.++|+..+.+.+.+-.+ .-....++..+..+..+.|.+++++..-- -..+.. -..--..|..+.
T Consensus 15 ~Ly~s~~~~~al~~w~~~L~~l~~----~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnla 90 (518)
T KOG1941|consen 15 QLYQSNQTEKALQVWTKVLEKLSD----LMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLA 90 (518)
T ss_pred hHhcCchHHHHHHHHHHHHHHHHH----HHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778889999988887764311 11223467777888888888887765422 222211 011134556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC-CCCc---cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHH
Q 035749 103 RGFCYANDSNEAKRLFIEMMDQ-GVQP---NVVTFSVIMDELCKNGKMEEASQLLELMIQIG-----VRPNAFVYNTLMD 173 (405)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~ 173 (405)
+++-+.-++.+++.+-..-... |..| .......+..++...+.++++++.|+...+.. ......++..+..
T Consensus 91 r~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgs 170 (518)
T KOG1941|consen 91 RSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGS 170 (518)
T ss_pred HHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHH
Confidence 6666666777777665554432 1111 12334456677777888999999998876542 1223467888999
Q ss_pred HHHccCCHHHHHHHHHHHHhc----CCCCChhhH-----HHHHHHHhhcCChHHHHHHHHHHHh----CCCCCc-hhhHH
Q 035749 174 GFCLTGRVNRAKELFVSMESM----GCKHNVFSY-----SILINGYCKNKEIEGALSLYSEMLS----KGIKPT-VVTYN 239 (405)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~ 239 (405)
.|.+..|+++|.-+..+..+. ++..-...| ..+.-++...|..-+|.+.-++..+ .|-.+. .....
T Consensus 171 lf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~ 250 (518)
T KOG1941|consen 171 LFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLL 250 (518)
T ss_pred HHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 999999999998877766442 221111122 2344456667777777777666543 342221 22344
Q ss_pred HHHHHHHccccHHHHHHHHHHHH
Q 035749 240 TLFIGLFEIHQVERAFKLFDEMQ 262 (405)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~ 262 (405)
.+...|...|+.+.|+.-|+...
T Consensus 251 ~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 251 CFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHhcccHhHHHHHHHHHH
Confidence 56677888999998888887654
No 250
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.53 E-value=0.012 Score=32.29 Aligned_cols=40 Identities=15% Similarity=0.221 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHH
Q 035749 61 VIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSV 101 (405)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 101 (405)
.++..+...+...|++++|.++|+++.+.. |.|...+..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 345666666666677777777766666653 4445544443
No 251
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.49 E-value=0.41 Score=40.01 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHH
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEE 44 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~ 44 (405)
+|..+.......|+..-|..+++.
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~ 25 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLEL 25 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHc
Confidence 356667777777887777776653
No 252
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.43 E-value=0.19 Score=41.01 Aligned_cols=152 Identities=15% Similarity=0.139 Sum_probs=85.4
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHh----hHHHHHHHHHcCCCH
Q 035749 71 CKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVV----TFSVIMDELCKNGKM 146 (405)
Q Consensus 71 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~ 146 (405)
.-.|+..+|-..++++.+. .|.|...+...=.+|...|+...-...++++... -.++.. ....+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3456666666666666654 3556666666666677777766666666666543 112222 222233344566777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC---CChhhHHHHHHHHhhcCChHHHHHHH
Q 035749 147 EEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCK---HNVFSYSILINGYCKNKEIEGALSLY 223 (405)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 223 (405)
++|++.-++..+.+ +.|.....+....+...|++.++.++..+-...=-. .-..-|=...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 77777777776665 556666666666666677777777666543321000 00111222233445556777777777
Q ss_pred HH
Q 035749 224 SE 225 (405)
Q Consensus 224 ~~ 225 (405)
+.
T Consensus 271 D~ 272 (491)
T KOG2610|consen 271 DR 272 (491)
T ss_pred HH
Confidence 65
No 253
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.38 E-value=0.25 Score=36.23 Aligned_cols=136 Identities=10% Similarity=0.048 Sum_probs=94.8
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccc-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChH
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKP-DAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVV 96 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 96 (405)
+...|..-+. +.+.+..++|+.-|..+.+.+ ... ..-..........+.|+...|...|+++-.....|-+.
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg------~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~ 130 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTG------YGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIG 130 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcC------CCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchh
Confidence 4455665555 457788899999999988776 222 23355566777788899999999999987654333222
Q ss_pred -HHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 035749 97 -TYN--SVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIG 160 (405)
Q Consensus 97 -~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (405)
-.. .-...+...|.++....-.+-+-..+.+.-...-..|..+-.+.|++..|.++|..+....
T Consensus 131 rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 131 RDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred hHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 111 1233456788899888888887766555555556677777889999999999999887653
No 254
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.36 E-value=0.13 Score=35.58 Aligned_cols=90 Identities=18% Similarity=0.161 Sum_probs=38.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHccCCH
Q 035749 105 FCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNA---FVYNTLMDGFCLTGRV 181 (405)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~ 181 (405)
....|+.+.|++.|.+.+..- +.....|+.-..++.-.|+.++|+.-+++.++..-+.+. ..|..-...|...|+-
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 334445555555554444431 224444444445554455555555444444443211111 1222223344445555
Q ss_pred HHHHHHHHHHHhcC
Q 035749 182 NRAKELFVSMESMG 195 (405)
Q Consensus 182 ~~a~~~~~~~~~~~ 195 (405)
+.|..-|+...+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 55555555444443
No 255
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.23 E-value=0.41 Score=37.33 Aligned_cols=205 Identities=12% Similarity=0.077 Sum_probs=98.2
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHh
Q 035749 132 TFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYC 211 (405)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 211 (405)
.|.....+|....++++|...+.+..+. ...+...|. - ...++.|.-+.+++... +.-...|+.-...|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-A------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-A------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-H------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3444455666677777777766665532 122222221 1 12234444444444443 222334455555666
Q ss_pred hcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHc---C--CCccHHHHHHHHHHHhcCCCh
Q 035749 212 KNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRH---G--VAADTWAYRTFIDGLCKNGYI 286 (405)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~~~~ 286 (405)
.+|.++.|-..+++.-+. .+.-++++|+++|.+.... + ...-...+......+.+...+
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 666666665555554321 1122333444444332211 0 011122233344455555566
Q ss_pred HHHHHHHHHHHhc-----CCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccC---CCcCccHHHHHHHHHHHHcCCCHHH
Q 035749 287 VEALELFRTLRIL-----KCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPR---GVLIADVVTYNIMIHALCADGKMDK 358 (405)
Q Consensus 287 ~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~ 358 (405)
++|-..+.+-... ..+.-...+...+-.+....++..|...++.-.+ ..-.-+..+...|+.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 6555444332111 0111123455556666777788888888877433 22223566677777655 4566666
Q ss_pred HHHHH
Q 035749 359 AHDLF 363 (405)
Q Consensus 359 A~~~~ 363 (405)
+.+++
T Consensus 246 ~~kvl 250 (308)
T KOG1585|consen 246 IKKVL 250 (308)
T ss_pred HHHHH
Confidence 65544
No 256
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.12 E-value=0.8 Score=39.90 Aligned_cols=152 Identities=12% Similarity=0.098 Sum_probs=81.6
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHH
Q 035749 24 TLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIR 103 (405)
Q Consensus 24 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 103 (405)
.++...-+..++.+-++.-.++++.+ +.-+..|..|.+- ......++.+++++..+.+ ...+..--
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~-------pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAg----E~~lg~s~- 238 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEIN-------PDCADAYILLAEE--EASTIVEAEELLRQAVKAG----EASLGKSQ- 238 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhh-------hhhhHHHhhcccc--cccCHHHHHHHHHHHHHHH----HHhhchhh-
Confidence 34444556666666666666766643 2233444444332 2344677777777766543 11110000
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCCHH
Q 035749 104 GFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVR-PNAFVYNTLMDGFCLTGRVN 182 (405)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 182 (405)
.....|. .++........|-..+-..+..++.+.|+.++|++.++++.+.... ....+...|+.++...+.+.
T Consensus 239 ~~~~~g~------~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Ya 312 (539)
T PF04184_consen 239 FLQHHGH------FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYA 312 (539)
T ss_pred hhhcccc------hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHH
Confidence 0000111 1111111212222333345666777888888888888888765311 13345667888888888888
Q ss_pred HHHHHHHHHHhcC
Q 035749 183 RAKELFVSMESMG 195 (405)
Q Consensus 183 ~a~~~~~~~~~~~ 195 (405)
++..++.+..+..
T Consensus 313 d~q~lL~kYdDi~ 325 (539)
T PF04184_consen 313 DVQALLAKYDDIS 325 (539)
T ss_pred HHHHHHHHhcccc
Confidence 8888888876543
No 257
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.12 E-value=0.32 Score=40.28 Aligned_cols=228 Identities=13% Similarity=0.116 Sum_probs=136.9
Q ss_pred HHhcCChHHHHHHHHHHHhCC--CCCChHHHHHHHHHHHhcCCHHHHHHHHHH----HHHCC-CCccHhhHHHHHHHHHc
Q 035749 70 LCKEGFVDKAKELLLQMKDKN--INPDVVTYNSVIRGFCYANDSNEAKRLFIE----MMDQG-VQPNVVTFSVIMDELCK 142 (405)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~-~~~~~~~~~~l~~~~~~ 142 (405)
+....+.++|+..+.+....- ...-..++..+..+..+.|.+++++..--. ..+.. ...-...|..+.+.+-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777666654431 011234455666677777777766543211 11110 01123455566666666
Q ss_pred CCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-----CChhhHHHHHHHHhhc
Q 035749 143 NGKMEEASQLLELMIQI-GVRP---NAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCK-----HNVFSYSILINGYCKN 213 (405)
Q Consensus 143 ~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~ 213 (405)
.-++.+++.+-...... |..+ .......+..++...+.++++++.|+........ ....++..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 66777777776665543 1122 1233445677888888999999999987654211 2345788899999999
Q ss_pred CChHHHHHHHHHHHhC----CCCCchhhH-----HHHHHHHHccccHHHHHHHHHHHHH----cCCCc-cHHHHHHHHHH
Q 035749 214 KEIEGALSLYSEMLSK----GIKPTVVTY-----NTLFIGLFEIHQVERAFKLFDEMQR----HGVAA-DTWAYRTFIDG 279 (405)
Q Consensus 214 ~~~~~a~~~~~~~~~~----~~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~ 279 (405)
.|+++|.-...+..+. ++..-..-| ..+..++...|....|.+.-++..+ .|..+ ....+..+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 9999988777665442 222111122 2344556677777777777666543 34222 24456677888
Q ss_pred HhcCCChHHHHHHHHHHH
Q 035749 280 LCKNGYIVEALELFRTLR 297 (405)
Q Consensus 280 ~~~~~~~~~a~~~~~~~~ 297 (405)
|...|+.+.|..-|+.+.
T Consensus 256 yR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHhcccHhHHHHHHHHHH
Confidence 999999999888777653
No 258
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.11 E-value=0.51 Score=37.25 Aligned_cols=63 Identities=5% Similarity=-0.070 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKN--INPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
.+..-+..-.+.|++++|.+.|+.+.... -+-...+.-.++.++.+.++.+.|+...++.+..
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 33344444566777888888887776552 1223444555666777777777777777777665
No 259
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.07 E-value=0.55 Score=37.29 Aligned_cols=224 Identities=20% Similarity=0.082 Sum_probs=144.6
Q ss_pred CCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-CCCCChhhHHHHHHHHhhcCChHHHH
Q 035749 143 NGKMEEASQLLELMIQIGVR-PNAFVYNTLMDGFCLTGRVNRAKELFVSMESM-GCKHNVFSYSILINGYCKNKEIEGAL 220 (405)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 220 (405)
.+....+...+......... .....+......+...+++..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35566666666666655322 13566677777788888888888888877652 22445566667777777788888888
Q ss_pred HHHHHHHhCCCCCchhhHHHHHH-HHHccccHHHHHHHHHHHHHcCC--CccHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 035749 221 SLYSEMLSKGIKPTVVTYNTLFI-GLFEIHQVERAFKLFDEMQRHGV--AADTWAYRTFIDGLCKNGYIVEALELFRTLR 297 (405)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 297 (405)
..+.........+ ......... .+...|+++.+...+........ ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8888887753332 122222233 67788888888888888755321 0123333344444566778888888888887
Q ss_pred hcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 298 ILKCEL-DIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 298 ~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
... +. ....+..+...+...++++.|...+......... ....+..+...+...+..+.+...+.+....
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 664 33 4666777777888888888888888877764211 2334444444444666788888888777764
No 260
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.98 E-value=0.32 Score=33.83 Aligned_cols=66 Identities=14% Similarity=0.167 Sum_probs=45.7
Q ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcC
Q 035749 339 DVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERN 405 (405)
Q Consensus 339 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 405 (405)
+.......+.....+|+-+.-.++++.+.+. -.+++.....+..+|.+.|+..++-+++.+.-++|
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3455666677778888888888888887753 46788888888888999999999998888887765
No 261
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.81 E-value=0.38 Score=33.45 Aligned_cols=64 Identities=17% Similarity=0.230 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 035749 131 VTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMG 195 (405)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 195 (405)
......+......|+-++-.+++..+.+.+ .+++.....+..+|.+.|+..++.+++.++-+.|
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 334445555666666666666666665433 5566666666666666666666666666666655
No 262
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.75 E-value=0.65 Score=35.59 Aligned_cols=185 Identities=11% Similarity=0.048 Sum_probs=103.5
Q ss_pred HHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHh
Q 035749 28 GLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCY 107 (405)
Q Consensus 28 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 107 (405)
.|-..|-+.-|.-=|.+.+... |.-+.+||.+...+...|+++.|.+.|+...+.. |....++..-.-.+.-
T Consensus 74 lYDSlGL~~LAR~DftQaLai~-------P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-p~y~Ya~lNRgi~~YY 145 (297)
T COG4785 74 LYDSLGLRALARNDFSQALAIR-------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYY 145 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhhcC-------CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC-CcchHHHhccceeeee
Confidence 3444555555666666666654 4557889999888889999999999999888764 2222232222233445
Q ss_pred cCCHHHHHHHHHHHHHCCCC-ccHhhHHHHHHHHHcCCCHHHHHHHHH-HHHHcCCCCCHHHHHHHH-HHHHccCCHHHH
Q 035749 108 ANDSNEAKRLFIEMMDQGVQ-PNVVTFSVIMDELCKNGKMEEASQLLE-LMIQIGVRPNAFVYNTLM-DGFCLTGRVNRA 184 (405)
Q Consensus 108 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a 184 (405)
.|++.-|.+-+...-+.+.. |-...|..+.. ..-++.+|..-+. +..+ .|..-|...+ ..|...-..+.
T Consensus 146 ~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yLgkiS~e~- 217 (297)
T COG4785 146 GGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYLGKISEET- 217 (297)
T ss_pred cCchHhhHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHHhhccHHH-
Confidence 68888888777766655322 22222222221 2335566655443 3332 2333333222 22221111121
Q ss_pred HHHHHHHHhcCC------CCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 035749 185 KELFVSMESMGC------KHNVFSYSILINGYCKNKEIEGALSLYSEMLSKG 230 (405)
Q Consensus 185 ~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 230 (405)
+++++..... ..-..+|--+...+...|+.++|..+|+-.+..+
T Consensus 218 --l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 218 --LMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred --HHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 2222222110 1125678888888889999999999998887764
No 263
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.74 E-value=0.55 Score=34.68 Aligned_cols=100 Identities=16% Similarity=0.141 Sum_probs=49.7
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCC--ChHHHHHHHHHHH
Q 035749 220 LSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNG--YIVEALELFRTLR 297 (405)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~ 297 (405)
.+.++.+...+++|+...+..++..+.+.|++.... .++..++-+|.......+-.+.... -.+-|++++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 444555555666677777777777777766654433 3333444444444433332222211 1222333333322
Q ss_pred hcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 035749 298 ILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSL 331 (405)
Q Consensus 298 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 331 (405)
. .+..++..+...|++-+|.++.+..
T Consensus 90 ~--------~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 90 T--------AYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred h--------hHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 1 2344555666677777777666654
No 264
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.73 E-value=0.17 Score=40.80 Aligned_cols=81 Identities=16% Similarity=0.193 Sum_probs=68.7
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCccHhhH
Q 035749 59 DAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMD-----QGVQPNVVTF 133 (405)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 133 (405)
-..++..++..+...|+++.+.+.++++.... |-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 35688889999999999999999999998886 77889999999999999999999999988865 4788888877
Q ss_pred HHHHHHH
Q 035749 134 SVIMDEL 140 (405)
Q Consensus 134 ~~l~~~~ 140 (405)
.......
T Consensus 231 ~~y~~~~ 237 (280)
T COG3629 231 ALYEEIL 237 (280)
T ss_pred HHHHHHh
Confidence 7666663
No 265
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.73 E-value=0.78 Score=36.36 Aligned_cols=201 Identities=21% Similarity=0.114 Sum_probs=111.0
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHH-
Q 035749 131 VTFSVIMDELCKNGKMEEASQLLELMIQI-GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILIN- 208 (405)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~- 208 (405)
.........+...+.+..+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44445555556666666666666555542 123344455555555556666666666666665543221 122222222
Q ss_pred HHhhcCChHHHHHHHHHHHhCCC--CCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhcCCC
Q 035749 209 GYCKNKEIEGALSLYSEMLSKGI--KPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAA-DTWAYRTFIDGLCKNGY 285 (405)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 285 (405)
.+...|+++.+...+.+...... ......+......+...++.+.+...+....... +. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 56666777777777776644211 0122223333333556667777777777776653 23 35566666667777777
Q ss_pred hHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCC
Q 035749 286 IVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRG 334 (405)
Q Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 334 (405)
++.+...+....... +.....+......+...+..+.+...+......
T Consensus 218 ~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777776653 222334444444444666677777777766653
No 266
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.72 E-value=1.8 Score=40.40 Aligned_cols=152 Identities=18% Similarity=0.162 Sum_probs=91.5
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHH
Q 035749 22 YSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSV 101 (405)
Q Consensus 22 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 101 (405)
...-+..+.+..-++-|+.+-+.-... ...-..........+.+.|++++|...|-+-+.. +.| ..+
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d-------~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~V 403 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLD-------EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEV 403 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCC-------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHH
Confidence 445566677777777777776653211 0112334555566666788999988877665543 122 234
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 035749 102 IRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181 (405)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 181 (405)
+.-|....++.+--.+++.+.+.|.. +...-+.|+.+|.+.++.++..++.+... .|.. ..-....+..+.+.+-.
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYL 479 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChH
Confidence 55566666777777788888888776 66666788888888888887777666543 2211 01123344445555555
Q ss_pred HHHHHHHHH
Q 035749 182 NRAKELFVS 190 (405)
Q Consensus 182 ~~a~~~~~~ 190 (405)
++|..+-.+
T Consensus 480 ~~a~~LA~k 488 (933)
T KOG2114|consen 480 DEAELLATK 488 (933)
T ss_pred HHHHHHHHH
Confidence 555544443
No 267
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.71 E-value=1.2 Score=38.33 Aligned_cols=128 Identities=20% Similarity=0.315 Sum_probs=59.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcC-CCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhH-HHHHHH
Q 035749 167 VYNTLMDGFCLTGRVNRAKELFVSMESMG-CKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTY-NTLFIG 244 (405)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~ 244 (405)
+|...++...+..-.+.|..+|-++.+.+ ..+++..+++++..++ .|++..|..+|+.-... .||...| ...+.-
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~f 475 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLF 475 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHH
Confidence 34444444444444555555555555544 3344455555554443 24555555555544433 2233322 223333
Q ss_pred HHccccHHHHHHHHHHHHHcCCCcc--HHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 035749 245 LFEIHQVERAFKLFDEMQRHGVAAD--TWAYRTFIDGLCKNGYIVEALELFRTLRI 298 (405)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 298 (405)
+...++-+.|..+|+..+.. +..+ ...|..++.--..-|+...+..+-+++..
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 44455555555555543332 1111 33455555555555555555555444443
No 268
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.65 E-value=0.53 Score=33.92 Aligned_cols=125 Identities=13% Similarity=0.126 Sum_probs=75.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcC
Q 035749 64 TTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKN 143 (405)
Q Consensus 64 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (405)
..++..+...+.+......++.+...+ +.++..++.++..|++.+ ..+..+.+.. ..+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 456666666778888888888887776 467778888888887654 3333344332 11333445567777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHh
Q 035749 144 GKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLT-GRVNRAKELFVSMESMGCKHNVFSYSILINGYC 211 (405)
Q Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 211 (405)
+.++++..++.++.. +...+..+... ++++.|.+++.+ ..++..|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 777777777766522 11222223333 667777776654 224556666665554
No 269
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.61 E-value=0.26 Score=39.80 Aligned_cols=80 Identities=8% Similarity=0.135 Sum_probs=69.6
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 035749 94 DVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQ-----IGVRPNAFVY 168 (405)
Q Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 168 (405)
-..++..++..+...|+++.+...++++....+ -+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 356788899999999999999999999998854 4889999999999999999999999998876 4788888887
Q ss_pred HHHHHH
Q 035749 169 NTLMDG 174 (405)
Q Consensus 169 ~~l~~~ 174 (405)
......
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 776666
No 270
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.61 E-value=0.55 Score=33.84 Aligned_cols=41 Identities=7% Similarity=0.042 Sum_probs=18.7
Q ss_pred HHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhc
Q 035749 241 LFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCK 282 (405)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 282 (405)
++..+...+.+.....+++.+...+ +.++...+.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 3344444444455555555544443 2344444444444443
No 271
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.52 E-value=0.66 Score=34.10 Aligned_cols=137 Identities=16% Similarity=0.138 Sum_probs=97.3
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHh-h--H
Q 035749 58 PDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPD-VVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVV-T--F 133 (405)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~--~ 133 (405)
.....|..-+. +.+.+..++|+.-|..+.+.|...- +...........+.|+...|...|+++-.....|-.. - -
T Consensus 57 ~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 57 KSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred cchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 34556666555 5677889999999999998864321 2233334556778999999999999998765444433 1 1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 035749 134 SVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMG 195 (405)
Q Consensus 134 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 195 (405)
..-.-.+...|.++....-.+.+...+-+.....-..|.-+-.+.|++..|.+.|..+....
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 12233466889999999988888766544444555677778889999999999999987643
No 272
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.51 E-value=0.017 Score=29.52 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=25.5
Q ss_pred HHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHH
Q 035749 42 FEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAK 80 (405)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (405)
|+++++.+ |.++.+|+.+...+...|++++|+
T Consensus 2 y~kAie~~-------P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-------PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-------CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 55666665 667889999999999999988875
No 273
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.50 E-value=1.2 Score=36.88 Aligned_cols=48 Identities=13% Similarity=0.170 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHC
Q 035749 77 DKAKELLLQMKDKNINPDVVTYNSVIRGFCY--AN----DSNEAKRLFIEMMDQ 124 (405)
Q Consensus 77 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~ 124 (405)
++.+.+++.+.+.|...+..+|-+....... .. ...+|..+|+.|++.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 3455666677777666665555442222222 11 234566677777664
No 274
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.50 E-value=2.7 Score=40.97 Aligned_cols=104 Identities=15% Similarity=0.093 Sum_probs=57.0
Q ss_pred HHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHH
Q 035749 245 LFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIA 324 (405)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 324 (405)
+.+...+++|.-.|+..-+ ....+.+|...|+|.+|+.+..++.... .--..+-..|+.-+...+++-+|
T Consensus 949 L~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~-de~~~~a~~L~s~L~e~~kh~eA 1018 (1265)
T KOG1920|consen 949 LREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGK-DELVILAEELVSRLVEQRKHYEA 1018 (1265)
T ss_pred HHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHcccchhH
Confidence 3344555555555544322 1234556667777777777776654311 11111225666677777887777
Q ss_pred HHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 035749 325 WELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDM 366 (405)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 366 (405)
-+++.+.... ....+..+++...|++|.++....
T Consensus 1019 a~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1019 AKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 7777766543 122233455556666666655443
No 275
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.49 E-value=0.037 Score=28.73 Aligned_cols=27 Identities=15% Similarity=0.194 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHc
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMIN 47 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 47 (405)
+|..|...|.+.|++++|+++|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 478899999999999999999999653
No 276
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.39 E-value=0.45 Score=35.90 Aligned_cols=61 Identities=11% Similarity=0.077 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 035749 22 YSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQM 86 (405)
Q Consensus 22 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 86 (405)
+..+...|.+.|+.+.|++.|.++.+.... ...-...+..+|+.....+++..+...+.+.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~----~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTS----PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCC----HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 444445555555555555555554443210 1112334444455555555555544444443
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.32 E-value=0.047 Score=28.31 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=17.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH
Q 035749 342 TYNIMIHALCADGKMDKAHDLFLDME 367 (405)
Q Consensus 342 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 367 (405)
+|..|...|.+.|++++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35667777777777777777777744
No 278
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.16 E-value=0.27 Score=39.21 Aligned_cols=103 Identities=16% Similarity=0.143 Sum_probs=54.6
Q ss_pred cHhhHHHHHHHHHc-----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhH
Q 035749 129 NVVTFSVIMDELCK-----NGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSY 203 (405)
Q Consensus 129 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 203 (405)
|..+|...+..+.. .+.++-....++.|.+-|+..|..+|+.|++.+-+..- .|. ..+
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~-nvf 128 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQ-NVF 128 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccH-HHH
Confidence 55556555555432 34455555666666666777777777766665432211 000 001
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHcccc
Q 035749 204 SILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQ 250 (405)
Q Consensus 204 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 250 (405)
....-.|- .+-+-+++++++|...|+.||..+-..++.++.+.+-
T Consensus 129 Q~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 129 QKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 11111111 1223456677777777777777777777777666554
No 279
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.14 E-value=2 Score=37.35 Aligned_cols=129 Identities=12% Similarity=0.095 Sum_probs=91.2
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHH
Q 035749 23 STLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVI 102 (405)
Q Consensus 23 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 102 (405)
..-|.-....|+.-.|-+-+..++++. +.++.............|+++.+...+...... +.....+...++
T Consensus 293 ~~si~k~~~~gd~~aas~~~~~~lr~~-------~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~ 364 (831)
T PRK15180 293 TLSITKQLADGDIIAASQQLFAALRNQ-------QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRL 364 (831)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHhC-------CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHH
Confidence 334555567788877766555555554 344444455555667789999999988766543 334567788889
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 035749 103 RGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIG 160 (405)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (405)
+...+.|+++.|...-+-|+...++ ++.............|-++++...|+++...+
T Consensus 365 r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 365 RSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 9999999999999999999887666 55554444444456678899999999887665
No 280
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.12 E-value=1 Score=41.76 Aligned_cols=245 Identities=16% Similarity=0.140 Sum_probs=139.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 035749 133 FSVIMDELCKNGKMEEASQLLELMIQIGVRPN--AFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGY 210 (405)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (405)
...-+..+.+...++-|+.+-+. .+.+++ .........-+.+.|++++|...|-+....- .| ..++.-|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~-----s~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EP-----SEVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-Ch-----HHHHHHh
Confidence 34556667777777777766543 222222 2234445566778899999988887766431 22 2345566
Q ss_pred hhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHH
Q 035749 211 CKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAL 290 (405)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 290 (405)
....+...-..+++.+.+.|.. +...-..|+.+|.+.++.++-.+..+... .|.. ..-....+..+.+.+-.++|.
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHH
Confidence 6777777788888888888755 44455678889999999888777766544 2211 112345566666677777776
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 035749 291 ELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKG 370 (405)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 370 (405)
.+-.+... +...... .+-..+++++|.+++..+.-... ..+.+.....+. ...+++-..++-+.....
T Consensus 484 ~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~slp~~e~---l~~l~kyGk~Ll-~h~P~~t~~ili~~~t~~ 551 (933)
T KOG2114|consen 484 LLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSLPISEL---LRTLNKYGKILL-EHDPEETMKILIELITEL 551 (933)
T ss_pred HHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcCCHHHH---HHHHHHHHHHHH-hhChHHHHHHHHHHHhhc
Confidence 65544332 3333333 34567889999999987753211 222222233322 234555555555554432
Q ss_pred CCCCHHHHHHHH-----HHHHccCchhHHHHHHHHhh
Q 035749 371 VAPDCVAFNTLM-----LGCIRNNETSKVVELLHRMD 402 (405)
Q Consensus 371 ~~~~~~~~~~l~-----~~~~~~g~~~~a~~~~~~~~ 402 (405)
.+++.......+ ....-.++++....+++.|.
T Consensus 552 ~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~ 588 (933)
T KOG2114|consen 552 NSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMS 588 (933)
T ss_pred CCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHH
Confidence 222222222211 12234566666666666544
No 281
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.09 E-value=2.7 Score=38.60 Aligned_cols=244 Identities=13% Similarity=0.068 Sum_probs=135.3
Q ss_pred hHHHHHHHHHHHhCCCCCChHHHHHHHHHHH-----hcCCHHHHHHHHHHHHH-------CCCCccHhhHHHHHHHHHcC
Q 035749 76 VDKAKELLLQMKDKNINPDVVTYNSVIRGFC-----YANDSNEAKRLFIEMMD-------QGVQPNVVTFSVIMDELCKN 143 (405)
Q Consensus 76 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 143 (405)
...+..+++...+.| +......+..++. ...+.+.|+.+|+.+.+ .| .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 467888888888776 4444444444333 44688999999988876 44 233455667777664
Q ss_pred C-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHh----hc
Q 035749 144 G-----KMEEASQLLELMIQIGVRPNAFVYNTLMDGFCL-TGRVNRAKELFVSMESMGCKHNVFSYSILINGYC----KN 213 (405)
Q Consensus 144 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 213 (405)
. +.+.|..++.+....| .|+.......+..... ..+...|.++|......|. ..++-.+..+|. -.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCcC
Confidence 3 6677999998888877 4555444333332222 2467889999999888772 222222222222 23
Q ss_pred CChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHH---hc----CCCh
Q 035749 214 KEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGL---CK----NGYI 286 (405)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~~~~ 286 (405)
.+...|..++.+..+.| .|....-...+..+.. ++++.+.-.+..+.+.+.......-..++... .. ..+.
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~ 455 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTL 455 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccch
Confidence 47788888998888876 3332222222333333 67777777766666655322211111111111 11 1244
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc----CCHHHHHHHHhhccCC
Q 035749 287 VEALELFRTLRILKCELDIRSYSCLIDGLCKS----GRLKIAWELFHSLPRG 334 (405)
Q Consensus 287 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~ 334 (405)
+.+...+.+....| +......+...|... .+++.|...+......
T Consensus 456 ~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~ 504 (552)
T KOG1550|consen 456 ERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQ 504 (552)
T ss_pred hHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHh
Confidence 55555555555433 333444444444332 2366666666655554
No 282
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.06 E-value=0.66 Score=35.01 Aligned_cols=63 Identities=17% Similarity=0.245 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 035749 61 VIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPD--VVTYNSVIRGFCYANDSNEAKRLFIEMMD 123 (405)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (405)
..+..++..|.+.|+.+.|++.|.++.+....+. ...+-.+|+.....+++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4566777777777777777777777666533222 34455666666677777766666665543
No 283
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.05 E-value=1.6 Score=35.89 Aligned_cols=164 Identities=15% Similarity=0.119 Sum_probs=97.7
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChHHHHH-------HHHHHHhcC-CHHHHHHHHHHHHHC--------CCCcc----
Q 035749 70 LCKEGFVDKAKELLLQMKDKNINPDVVTYNS-------VIRGFCYAN-DSNEAKRLFIEMMDQ--------GVQPN---- 129 (405)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~---- 129 (405)
..++|+.+.|..++.+........++..... +.......+ +++.|..++++..+. ...|+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 3578999999999998876431223222222 233344556 888888887766543 12222
Q ss_pred -HhhHHHHHHHHHcCCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHH
Q 035749 130 -VVTFSVIMDELCKNGKME---EASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSI 205 (405)
Q Consensus 130 -~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 205 (405)
..++..++.++...+..+ +|..+++.+... .+..+.++..-++.+.+.++.+.+.+.+.+|...- ......+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~ 160 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHH
Confidence 245667788888777654 556666666444 23345566566777777899999999999998763 223344444
Q ss_pred HHHHHhh--cCChHHHHHHHHHHHhCCCCCch
Q 035749 206 LINGYCK--NKEIEGALSLYSEMLSKGIKPTV 235 (405)
Q Consensus 206 l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~ 235 (405)
.+..+.. ......+...+..++...+.|..
T Consensus 161 ~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 161 ILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 4444422 22345566666665554444443
No 284
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.98 E-value=2.9 Score=38.50 Aligned_cols=320 Identities=13% Similarity=0.097 Sum_probs=168.9
Q ss_pred HHhcCChHHHHHHHHHH--------HhCCCCCChHHHHH-----HHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHH
Q 035749 70 LCKEGFVDKAKELLLQM--------KDKNINPDVVTYNS-----VIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVI 136 (405)
Q Consensus 70 ~~~~~~~~~a~~~~~~~--------~~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (405)
+.+..++++-..+.+.+ ...|++.+..-|.. ++.-+...+.+..|+++-..+...-.. +...|...
T Consensus 399 ~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~W 477 (829)
T KOG2280|consen 399 SLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEW 477 (829)
T ss_pred ccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHH
Confidence 33445555555554443 23466766666654 456667778888888887776432111 24555666
Q ss_pred HHHHHcCCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC----CChhhHHHHHHHH
Q 035749 137 MDELCKNGK--MEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCK----HNVFSYSILINGY 210 (405)
Q Consensus 137 ~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~ 210 (405)
...+.+..+ -+++.+.++.=.+.. ..+...|..+.+-....|+++-|..+++.=...+.. .+..-+...+.-.
T Consensus 478 a~~kI~~~d~~d~~vld~I~~kls~~-~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~ka 556 (829)
T KOG2280|consen 478 ARRKIKQSDKMDEEVLDKIDEKLSAK-LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKA 556 (829)
T ss_pred HHHHHhccCccchHHHHHHHHHhccc-CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHH
Confidence 666655532 122332222222221 234566778888888889998888877642221100 0112233444455
Q ss_pred hhcCChHHHHHHHHHHHhCC-----------CCCchhhHHHHHH--------HHHccccHHHHHHH--HHHHHHcC-CCc
Q 035749 211 CKNKEIEGALSLYSEMLSKG-----------IKPTVVTYNTLFI--------GLFEIHQVERAFKL--FDEMQRHG-VAA 268 (405)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~--------~~~~~~~~~~a~~~--~~~~~~~~-~~~ 268 (405)
.+.|+.+-...++-.+...- .+.....|..+++ .+...++-..+... ++...+.. +.+
T Consensus 557 ies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~ 636 (829)
T KOG2280|consen 557 IESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEG 636 (829)
T ss_pred HhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcc
Confidence 56666666555555444320 1111122222222 01111111111111 11111100 111
Q ss_pred cHHHHHHHHHHHhcCCChH---HH-------HHHHHHHHh-cCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcC
Q 035749 269 DTWAYRTFIDGLCKNGYIV---EA-------LELFRTLRI-LKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLI 337 (405)
Q Consensus 269 ~~~~~~~l~~~~~~~~~~~---~a-------~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 337 (405)
-..........+.+..... +| +.+.+.+.. .+.....-+.+.-+.-+...|+..+|.++-.+.. .
T Consensus 637 r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----i 712 (829)
T KOG2280|consen 637 RIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----I 712 (829)
T ss_pred cchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----C
Confidence 1222333334444332211 11 111122211 1212223345556667778899999999877765 4
Q ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHh
Q 035749 338 ADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRM 401 (405)
Q Consensus 338 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 401 (405)
||...|..-+.+++..++|++-.++-+... .+.-|.-.+.+|.+.|+.++|.+++-+.
T Consensus 713 pdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 713 PDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred cchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhcc
Confidence 688999999999999999999777665544 2445777889999999999999988765
No 285
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.97 E-value=4 Score=39.91 Aligned_cols=85 Identities=18% Similarity=0.214 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHH--HHHHHHHH
Q 035749 272 AYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVV--TYNIMIHA 349 (405)
Q Consensus 272 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~ 349 (405)
.+......+...+.+++|.-+|+..-+ ....+.+|..+|++.+|+.+..++... -+.. +-..|+..
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~ 1008 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSR 1008 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHH
Confidence 344444555566777777766665432 223466788888888888888776542 1222 22567777
Q ss_pred HHcCCCHHHHHHHHHHHHh
Q 035749 350 LCADGKMDKAHDLFLDMEA 368 (405)
Q Consensus 350 ~~~~g~~~~A~~~~~~~~~ 368 (405)
+...+++-+|-++..+...
T Consensus 1009 L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1009 LVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHcccchhHHHHHHHHhc
Confidence 8888888888888877765
No 286
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.91 E-value=0.042 Score=28.05 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=12.1
Q ss_pred CccHHHHHHHHHHHHhcCCHHHH
Q 035749 302 ELDIRSYSCLIDGLCKSGRLKIA 324 (405)
Q Consensus 302 ~~~~~~~~~l~~~~~~~~~~~~a 324 (405)
|.+..+|+.++..|...|++++|
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhh
Confidence 44455555555555555555554
No 287
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.84 E-value=1.1 Score=32.75 Aligned_cols=55 Identities=16% Similarity=-0.068 Sum_probs=28.4
Q ss_pred HHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 035749 28 GLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK 89 (405)
Q Consensus 28 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (405)
.-.+.++.+.+..+++.+.-..+ ..+..-..-...++..|+|.+|+.+|+++...
T Consensus 19 ~al~~~~~~D~e~lL~ALrvLRP-------~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVLRP-------EFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHccCChHHHHHHHHHHHHhCC-------CchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 33455666666666666655431 12222222233355566666666666666544
No 288
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.73 E-value=1.2 Score=32.90 Aligned_cols=29 Identities=24% Similarity=0.222 Sum_probs=13.4
Q ss_pred HHhhcCCCCChhHHHHHHHHHHhcCchHH
Q 035749 9 KLKAFGCEPNVITYSTLINGLCRTGHTIV 37 (405)
Q Consensus 9 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 37 (405)
.+.+.+++|+...+..++..+.+.|++..
T Consensus 19 Sl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 19 SLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 33344444444444444444444444443
No 289
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.63 E-value=0.87 Score=39.49 Aligned_cols=109 Identities=15% Similarity=-0.026 Sum_probs=65.3
Q ss_pred HHhcCCChHHHHHHHHHHHhc---CCCcc-----HHHHHHHHHHHHhcCCHHHHHHHHhhccC-------CCcCcc----
Q 035749 279 GLCKNGYIVEALELFRTLRIL---KCELD-----IRSYSCLIDGLCKSGRLKIAWELFHSLPR-------GVLIAD---- 339 (405)
Q Consensus 279 ~~~~~~~~~~a~~~~~~~~~~---~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~---- 339 (405)
.+.-.|++.+|.+++...--. |...+ ...++.+...+.+.|.+.-+..+|.+..+ .|++|.
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 344567777777776553211 11111 11235555555566666666555555432 233331
Q ss_pred ------HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 035749 340 ------VVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRN 388 (405)
Q Consensus 340 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 388 (405)
..........|...|++-.|.+.|.+.... +..++..|..+..+|...
T Consensus 329 ls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 329 LSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 112223445678899999999999988876 677889999999988743
No 290
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.55 E-value=0.98 Score=34.02 Aligned_cols=130 Identities=15% Similarity=0.131 Sum_probs=86.5
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHH--HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAV--IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDV 95 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 95 (405)
-...|..++.... .+.+ +.....+++...++ ...-. .-..+...+...|++++|..-++..... |..
T Consensus 53 AS~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~------~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~D 121 (207)
T COG2976 53 ASAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANG------KTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKD 121 (207)
T ss_pred HHHHHHHHHHHHh-cCCc-hhHHHHHHHHhhcc------ccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chh
Confidence 3446777777664 4444 55666666666652 22222 3445567788889999999998887754 222
Q ss_pred HHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 035749 96 VTY-----NSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIG 160 (405)
Q Consensus 96 ~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (405)
..+ ..|.+.....|.+++|+..++.....+. .......-..++...|+-++|..-|++.++.+
T Consensus 122 e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 122 ENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 222 3456677788999999998887765432 22233445667888999999999999988875
No 291
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.53 E-value=0.66 Score=35.03 Aligned_cols=89 Identities=12% Similarity=0.063 Sum_probs=54.3
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcC
Q 035749 69 GLCKEGFVDKAKELLLQMKDKNINPD-----VVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKN 143 (405)
Q Consensus 69 ~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (405)
-+.+.|++++|..-|...+..- |+. ...|..-..++++.+.++.|+.-..+.++.++. ...+...-+.+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 3455677777777777666552 322 233444455666777777777777766665433 333444445567777
Q ss_pred CCHHHHHHHHHHHHHc
Q 035749 144 GKMEEASQLLELMIQI 159 (405)
Q Consensus 144 ~~~~~a~~~~~~~~~~ 159 (405)
..++.|+.-|.++.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 7777777777777765
No 292
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.53 E-value=0.11 Score=26.39 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 035749 341 VTYNIMIHALCADGKMDKAHDLFLDMEA 368 (405)
Q Consensus 341 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 368 (405)
.+|..++.++...|++++|+..|+++++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3455666666666666666666666665
No 293
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.37 E-value=1.8 Score=33.31 Aligned_cols=28 Identities=21% Similarity=0.067 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 035749 271 WAYRTFIDGLCKNGYIVEALELFRTLRI 298 (405)
Q Consensus 271 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 298 (405)
.++..+...+...|+.++|..+|+-...
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3445555555555555555555555544
No 294
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.26 E-value=1.5 Score=32.00 Aligned_cols=18 Identities=33% Similarity=0.357 Sum_probs=8.6
Q ss_pred HhcCCChHHHHHHHHHHH
Q 035749 280 LCKNGYIVEALELFRTLR 297 (405)
Q Consensus 280 ~~~~~~~~~a~~~~~~~~ 297 (405)
+...|++.+|..+|+.+.
T Consensus 54 ~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHHhCCHHHHHHHHHHHh
Confidence 344445555555555443
No 295
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.25 E-value=0.7 Score=36.97 Aligned_cols=106 Identities=15% Similarity=0.150 Sum_probs=71.1
Q ss_pred CCChHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHH
Q 035749 92 NPDVVTYNSVIRGFCYA-----NDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAF 166 (405)
Q Consensus 92 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 166 (405)
..|-.+|...+..+... +.++-....++.|.+.|+..|..+|..|++.+-+..- .|. .
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~-n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQ-N 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccH-H
Confidence 45777787777776543 5566666778888999999999999999887654321 111 1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCCh
Q 035749 167 VYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEI 216 (405)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 216 (405)
++....-.|- .+-+=++.++++|...|+.||-.+-..+++++.+.+..
T Consensus 127 vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 127 VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 1111111111 22345678888888888888888888888888776654
No 296
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.24 E-value=0.48 Score=35.94 Aligned_cols=23 Identities=13% Similarity=0.042 Sum_probs=11.3
Q ss_pred CCChHHHHHHHHHHHhcCCHHHH
Q 035749 92 NPDVVTYNSVIRGFCYANDSNEA 114 (405)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a 114 (405)
.+|+..+..|+..+.+.|+.+.|
T Consensus 175 ~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 175 NFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCCHHHHHHHHHHHHHhcchhhh
Confidence 34445555555555555554444
No 297
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.15 E-value=4.6 Score=37.13 Aligned_cols=275 Identities=14% Similarity=0.059 Sum_probs=156.0
Q ss_pred hHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHH---HHhcCChHHHHHHHHHHHh-------CCCCCChHHHHHHHHH
Q 035749 35 TIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDG---LCKEGFVDKAKELLLQMKD-------KNINPDVVTYNSVIRG 104 (405)
Q Consensus 35 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~ 104 (405)
...|.++++.....+ ...+......+.. +....+.+.|+..|+.+.+ .+ .+.....+..+
T Consensus 228 ~~~a~~~~~~~a~~g-------~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~ 297 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG-------HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRL 297 (552)
T ss_pred hhHHHHHHHHHHhhc-------chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHH
Confidence 467889998887765 1222222222222 3356789999999999876 44 44466677777
Q ss_pred HHhcC-----CHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHc-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--
Q 035749 105 FCYAN-----DSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCK-NGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFC-- 176 (405)
Q Consensus 105 ~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 176 (405)
|.+.. +...|..++...-..|.+ +.......+..... ..+...|.++|....+.|.. ..+..+..+|.
T Consensus 298 Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G 373 (552)
T KOG1550|consen 298 YLQGLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELG 373 (552)
T ss_pred HhcCCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhC
Confidence 77643 667899999999888654 44443322222222 24678999999999998832 22323333322
Q ss_pred --ccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHH-HH---HHc---
Q 035749 177 --LTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLF-IG---LFE--- 247 (405)
Q Consensus 177 --~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~---~~~--- 247 (405)
...+...|..++++..+.| .|....-...+..+.. +.++.+.-.+..+.+.+... ..+-...+ .. ...
T Consensus 374 ~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~-~q~~a~~l~~~~~~~~~~~~ 450 (552)
T KOG1550|consen 374 LGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEV-AQSNAAYLLDQSEEDLFSRG 450 (552)
T ss_pred CCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhH-HhhHHHHHHHhccccccccc
Confidence 3346889999999999887 3333332333344444 77777777777766654321 11111111 11 111
Q ss_pred -cccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcC----CChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh----c
Q 035749 248 -IHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKN----GYIVEALELFRTLRILKCELDIRSYSCLIDGLCK----S 318 (405)
Q Consensus 248 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 318 (405)
..+.+.+...+......| +......+...|... .+++.|...+......+ ......+...+.. .
T Consensus 451 ~~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~ 523 (552)
T KOG1550|consen 451 VISTLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIK 523 (552)
T ss_pred cccchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcc
Confidence 224556666666665544 444445555544332 34666766666665543 3333333333321 2
Q ss_pred CCHHHHHHHHhhccCC
Q 035749 319 GRLKIAWELFHSLPRG 334 (405)
Q Consensus 319 ~~~~~a~~~~~~~~~~ 334 (405)
. +..|.++++...+.
T Consensus 524 ~-~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 524 V-LHLAKRYYDQASEE 538 (552)
T ss_pred h-hHHHHHHHHHHHhc
Confidence 2 56666666665543
No 298
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.12 E-value=3.4 Score=35.44 Aligned_cols=65 Identities=12% Similarity=0.069 Sum_probs=46.9
Q ss_pred chhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCc---cHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 035749 234 TVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAA---DTWAYRTFIDGLCKNGYIVEALELFRTLRI 298 (405)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 298 (405)
...++..+...+.+.|.++.|...+..+...+... .+......+..+-..|+..+|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567778888888999999998888887643111 344445556666677888888888888776
No 299
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.12 E-value=9.4 Score=40.60 Aligned_cols=152 Identities=9% Similarity=0.011 Sum_probs=91.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHc
Q 035749 65 TIIDGLCKEGFVDKAKELLLQMKDKNI--NPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCK 142 (405)
Q Consensus 65 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (405)
.+..+-.+.+.+.+|+..++.-..... ......+..+...|...++++....+...-.. +.. ....+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~s-l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPS-LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Ccc-HHHHHHHHHh
Confidence 455566677888888888887311100 11233444555588888888888777664211 122 2234455667
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHH-HHHHHHhhcCChHHHHH
Q 035749 143 NGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYS-ILINGYCKNKEIEGALS 221 (405)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~ 221 (405)
.|++..|...|+.+.+.+ ++....++.++......|.++......+-..... .+....++ .-..+--+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 789999999999988875 4456777777777777888877777666554432 22222222 22333355666665555
Q ss_pred HHH
Q 035749 222 LYS 224 (405)
Q Consensus 222 ~~~ 224 (405)
...
T Consensus 1540 ~l~ 1542 (2382)
T KOG0890|consen 1540 YLS 1542 (2382)
T ss_pred hhh
Confidence 544
No 300
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.97 E-value=0.16 Score=25.61 Aligned_cols=27 Identities=15% Similarity=0.187 Sum_probs=15.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 035749 342 TYNIMIHALCADGKMDKAHDLFLDMEA 368 (405)
Q Consensus 342 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 368 (405)
.|..+..++...|++++|++.|++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555556666666666666666554
No 301
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.96 E-value=0.16 Score=25.75 Aligned_cols=30 Identities=20% Similarity=0.260 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCC
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGN 49 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 49 (405)
.+|..+...+...|++++|+..|+++++.+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 578899999999999999999999999865
No 302
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.68 E-value=1.6 Score=33.27 Aligned_cols=79 Identities=10% Similarity=-0.013 Sum_probs=55.2
Q ss_pred HHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHccCch
Q 035749 315 LCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAK---GVAPDCVAFNTLMLGCIRNNET 391 (405)
Q Consensus 315 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~ 391 (405)
+.+.|+ +.|...|-.+...+..-++.....|+..|. ..+.++++.++-++.+. +-.+|+..+.+|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344454 566777766666555446666555555444 67788888888888764 3367788888999999999988
Q ss_pred hHHH
Q 035749 392 SKVV 395 (405)
Q Consensus 392 ~~a~ 395 (405)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8875
No 303
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.59 E-value=6.8 Score=37.15 Aligned_cols=226 Identities=14% Similarity=0.062 Sum_probs=122.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCccHh-------hHHHHH-HHHHcCCCHHHHHHHHHHHHHcC----CCCCHHHHH
Q 035749 102 IRGFCYANDSNEAKRLFIEMMDQGVQPNVV-------TFSVIM-DELCKNGKMEEASQLLELMIQIG----VRPNAFVYN 169 (405)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~ 169 (405)
+.......++++|..+..++...-..|+.. .++.+- ......|+++++.++.+.....- ..+....+.
T Consensus 422 aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~s 501 (894)
T COG2909 422 AWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALS 501 (894)
T ss_pred HHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhh
Confidence 344556788999999988876542222211 222222 23346789999999888876641 233455666
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHH-----HHHhhcCCh--HHHHHHHHHHHhC---CCC---Cchh
Q 035749 170 TLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILI-----NGYCKNKEI--EGALSLYSEMLSK---GIK---PTVV 236 (405)
Q Consensus 170 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~--~~a~~~~~~~~~~---~~~---~~~~ 236 (405)
.+..+..-.|++++|..+.....+.....+...+..+. ..+...|+. .+....+...... ..+ +-..
T Consensus 502 v~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~ 581 (894)
T COG2909 502 VLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVR 581 (894)
T ss_pred hhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHH
Confidence 77788888999999999988876653233443333222 234455632 2233333333221 011 1122
Q ss_pred hHHHHHHHHHccccHHHHHHHHHH----HHHcCCCccHHH--HHHHHHHHhcCCChHHHHHHHHHHHhcCCCc----cHH
Q 035749 237 TYNTLFIGLFEIHQVERAFKLFDE----MQRHGVAADTWA--YRTFIDGLCKNGYIVEALELFRTLRILKCEL----DIR 306 (405)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~ 306 (405)
+...++.++.+ .+.+..-... .......|-... +..++......|+.++|...++++......+ +..
T Consensus 582 ~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~ 658 (894)
T COG2909 582 IRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYL 658 (894)
T ss_pred HHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHH
Confidence 34444444444 3333222222 222211111122 2366778888999999999988876543222 222
Q ss_pred HHHHHH--HHHHhcCCHHHHHHHHhh
Q 035749 307 SYSCLI--DGLCKSGRLKIAWELFHS 330 (405)
Q Consensus 307 ~~~~l~--~~~~~~~~~~~a~~~~~~ 330 (405)
.-...+ ......|+...+.....+
T Consensus 659 a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 659 AAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 222222 234567888888777665
No 304
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.56 E-value=0.2 Score=25.25 Aligned_cols=30 Identities=17% Similarity=0.208 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCC
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGN 49 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 49 (405)
..|..+...+...|++++|++.|+++++..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 467889999999999999999999998865
No 305
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.31 E-value=7.6 Score=36.87 Aligned_cols=227 Identities=14% Similarity=0.065 Sum_probs=122.4
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCCCChh-------hHHHH-HHHHhhcCChHHHHHHHHHHHhC----CCCCchhhHHHH
Q 035749 174 GFCLTGRVNRAKELFVSMESMGCKHNVF-------SYSIL-INGYCKNKEIEGALSLYSEMLSK----GIKPTVVTYNTL 241 (405)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l-~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l 241 (405)
......++++|..++.++...-..|+.. .++.+ .......|+++.|.++-+..... -..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3456778999999988876542122211 22222 22344578899999988887764 123345556667
Q ss_pred HHHHHccccHHHHHHHHHHHHHcCCCccHHHH---HHH--HHHHhcCCChH--HHHHHHHHHHhc---CCC---ccHHHH
Q 035749 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAY---RTF--IDGLCKNGYIV--EALELFRTLRIL---KCE---LDIRSY 308 (405)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l--~~~~~~~~~~~--~a~~~~~~~~~~---~~~---~~~~~~ 308 (405)
..+..-.|++++|..+.....+..-.-+...+ ..+ ...+...|... +.+..+...... ..+ +-..+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 77778889999999988876653212222222 222 23455666322 223333333221 111 122344
Q ss_pred HHHHHHHHhc-CCHHHHHHHHhhccCCCcCccHH--HHHHHHHHHHcCCCHHHHHHHHHHHHhCCC----CCCHHHHHHH
Q 035749 309 SCLIDGLCKS-GRLKIAWELFHSLPRGVLIADVV--TYNIMIHALCADGKMDKAHDLFLDMEAKGV----APDCVAFNTL 381 (405)
Q Consensus 309 ~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~l 381 (405)
..+..++.+. +...++..-+.--......|-.. .+..|+.+....|+.++|...+.++..... .++...-...
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 4555555541 12222222222222221222222 223677888899999999999988876522 2333333333
Q ss_pred HHH--HHccCchhHHHHHHHH
Q 035749 382 MLG--CIRNNETSKVVELLHR 400 (405)
Q Consensus 382 ~~~--~~~~g~~~~a~~~~~~ 400 (405)
++. ....|+.+++...+.+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 332 3467888888777665
No 306
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.19 E-value=7.5 Score=36.45 Aligned_cols=135 Identities=10% Similarity=0.040 Sum_probs=65.3
Q ss_pred HHhcCchHHHHHHHHHHHcCCCCCcccccccH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHh
Q 035749 29 LCRTGHTIVALNLFEEMINGNGEFGVVCKPDA-VIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCY 107 (405)
Q Consensus 29 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 107 (405)
..+.|++..+.++-..+.. . +..+ ..|..+... .....+++....+++... .|.....-...+..+.+
T Consensus 43 a~~~g~~~~~~~~~~~l~d-~-------pL~~yl~y~~L~~~-l~~~~~~ev~~Fl~~~~~--~P~~~~Lr~~~l~~La~ 111 (644)
T PRK11619 43 AWDNRQMDVVEQLMPTLKD-Y-------PLYPYLEYRQLTQD-LMNQPAVQVTNFIRANPT--LPPARSLQSRFVNELAR 111 (644)
T ss_pred HHHCCCHHHHHHHHHhccC-C-------CcHhHHHHHHHHhc-cccCCHHHHHHHHHHCCC--CchHHHHHHHHHHHHHH
Confidence 4567777777666666532 1 2211 122222221 112245544444443222 12223333344445556
Q ss_pred cCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 035749 108 ANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGR 180 (405)
Q Consensus 108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (405)
.+++....+.+.. .+.+...-...+.+....|+.++|......+-..| ...+.....++..+.+.|.
T Consensus 112 ~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~ 178 (644)
T PRK11619 112 REDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGK 178 (644)
T ss_pred ccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCC
Confidence 6777766653211 23344444455666777788777766666665554 3334455555555554443
No 307
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.11 E-value=4.4 Score=33.61 Aligned_cols=132 Identities=14% Similarity=0.230 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHCCCCccHhhHHHHHHHHHc--CC----CHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHccCC-
Q 035749 111 SNEAKRLFIEMMDQGVQPNVVTFSVIMDELCK--NG----KMEEASQLLELMIQIGV---RPNAFVYNTLMDGFCLTGR- 180 (405)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~- 180 (405)
+++.+.+++.|.+.|..-+..+|......... .. ....+..+++.|.+... .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556778888888877666555543333322 12 24567778888877631 1223333333322 3333
Q ss_pred ---HHHHHHHHHHHHhcCCCCCh--hhHHHHHHHHhhcCC--hHHHHHHHHHHHhCCCCCchhhHHHHHHH
Q 035749 181 ---VNRAKELFVSMESMGCKHNV--FSYSILINGYCKNKE--IEGALSLYSEMLSKGIKPTVVTYNTLFIG 244 (405)
Q Consensus 181 ---~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (405)
.+.++.+|+.+.+.|...+. ...+.++........ ..++.++++.+.+.|+++....|..++-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 34566667777665554432 222333322222222 33666777777777777666666555433
No 308
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.08 E-value=0.99 Score=29.45 Aligned_cols=59 Identities=14% Similarity=0.198 Sum_probs=46.3
Q ss_pred HhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHH
Q 035749 3 AAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIID 68 (405)
Q Consensus 3 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 68 (405)
+.+-++.+...+.-|++....+.+++|.+-+|+.-|+.+|+.+...- ..+...|..+++
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-------~~~~~~y~~~lq 84 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-------GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-------cCchhhHHHHHH
Confidence 45566677777888999999999999999999999999999887543 234456666654
No 309
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.85 E-value=3.3 Score=31.49 Aligned_cols=90 Identities=14% Similarity=0.108 Sum_probs=60.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcc----HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 035749 104 GFCYANDSNEAKRLFIEMMDQGVQPN----VVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTG 179 (405)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 179 (405)
-+...|++++|..-|...+..-++.. ...|..-..++.+.+.++.|+.-..+.++.+ +........-..+|.+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhh
Confidence 35677888888888888876522211 2334445556777888888888888877775 333334444456777777
Q ss_pred CHHHHHHHHHHHHhc
Q 035749 180 RVNRAKELFVSMESM 194 (405)
Q Consensus 180 ~~~~a~~~~~~~~~~ 194 (405)
.++.|+.=|+++.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 788888888887766
No 310
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.77 E-value=1.4 Score=29.08 Aligned_cols=77 Identities=6% Similarity=0.031 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhcCCHH--HHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 035749 306 RSYSCLIDGLCKSGRLK--IAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLML 383 (405)
Q Consensus 306 ~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 383 (405)
.-+..--..|....+.| +..+-++.+....+.|++....+.+++|.+.+++..|+++|+-.+.+ ..+....|..++.
T Consensus 9 eeF~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 9 EEFDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 33444444555544443 66777778888888899999999999999999999999999988876 2333336766654
No 311
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.62 E-value=2.8 Score=30.13 Aligned_cols=52 Identities=13% Similarity=0.128 Sum_probs=25.6
Q ss_pred hcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 035749 31 RTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK 89 (405)
Q Consensus 31 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (405)
..++++.+..+++.+.-..+ -.+...++-.. .++..|+|.+|+.+|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP-----~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRP-----NLKELDMFDGW--LLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCC-----CccccchhHHH--HHHHcCCHHHHHHHHHhhhcc
Confidence 45566666666665554432 11222233222 244556666666666665554
No 312
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.49 E-value=0.56 Score=30.56 Aligned_cols=63 Identities=8% Similarity=-0.034 Sum_probs=48.7
Q ss_pred CHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 035749 320 RLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLML 383 (405)
Q Consensus 320 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 383 (405)
+.=++.+-++.+......|++....+.+++|.+.+++..|+++|+-.+.+ ...+...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 44567777788877788899999999999999999999999999988754 2224456666553
No 313
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.40 E-value=0.4 Score=25.55 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 035749 341 VTYNIMIHALCADGKMDKAHDLFLDMEA 368 (405)
Q Consensus 341 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 368 (405)
.+++.+...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777777888888888887777764
No 314
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.14 E-value=0.37 Score=25.69 Aligned_cols=30 Identities=27% Similarity=0.276 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHcC
Q 035749 19 VITYSTLINGLCRTGHTIVALNLFEEMING 48 (405)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 48 (405)
..+++.+...|...|++++|..+++++.+.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 357889999999999999999999998764
No 315
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.11 E-value=0.021 Score=41.46 Aligned_cols=84 Identities=14% Similarity=0.093 Sum_probs=45.2
Q ss_pred HHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC
Q 035749 241 LFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGR 320 (405)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 320 (405)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++...+++.... .-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhcch
Confidence 3445555666666666666666554445566666666677766665666655551111 112334455555555
Q ss_pred HHHHHHHHhhc
Q 035749 321 LKIAWELFHSL 331 (405)
Q Consensus 321 ~~~a~~~~~~~ 331 (405)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66655555544
No 316
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.04 E-value=4.2 Score=30.82 Aligned_cols=92 Identities=8% Similarity=0.011 Sum_probs=63.9
Q ss_pred HHHHhcCCChHHHHHHHHHHHhcCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCC
Q 035749 277 IDGLCKNGYIVEALELFRTLRILKCELD--IRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADG 354 (405)
Q Consensus 277 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 354 (405)
...+...+++++|..-++.........+ ..+-..+.+.....|.+|+|+..++.....++ .......-...+...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcC
Confidence 4556778888888888887765321111 12234556777888999999999888776533 2333445567788899
Q ss_pred CHHHHHHHHHHHHhCC
Q 035749 355 KMDKAHDLFLDMEAKG 370 (405)
Q Consensus 355 ~~~~A~~~~~~~~~~~ 370 (405)
+.++|+.-|++.+..+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 9999999999988874
No 317
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.83 E-value=3.6 Score=29.61 Aligned_cols=19 Identities=32% Similarity=0.335 Sum_probs=9.0
Q ss_pred HhcCCChHHHHHHHHHHHh
Q 035749 280 LCKNGYIVEALELFRTLRI 298 (405)
Q Consensus 280 ~~~~~~~~~a~~~~~~~~~ 298 (405)
+...|++.+|..+|+.+.+
T Consensus 54 ~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 54 LIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHcCCHHHHHHHHHhhhc
Confidence 3444455555555544443
No 318
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.74 E-value=11 Score=35.20 Aligned_cols=188 Identities=15% Similarity=0.082 Sum_probs=106.2
Q ss_pred HhHHHHHHhh-cCCCCChh--HHHHHHHHHH-hcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHH
Q 035749 3 AAALFTKLKA-FGCEPNVI--TYSTLINGLC-RTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDK 78 (405)
Q Consensus 3 A~~~~~~~~~-~~~~~~~~--~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 78 (405)
|++.++-+.+ ..++|... ++..+...+. ...+++.|...+++........+. ...--..-..++..+.+.+...
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~-~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRL-TDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch-HHHHHHHHHHHHHHHHhcCHHH-
Confidence 5667777773 33444333 4556666666 778899999999998665421000 0001123345566666666555
Q ss_pred HHHHHHHHHhCC----CCCChHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCccHhhHHHHHHHH--HcCCCHHH
Q 035749 79 AKELLLQMKDKN----INPDVVTYNSV-IRGFCYANDSNEAKRLFIEMMDQG---VQPNVVTFSVIMDEL--CKNGKMEE 148 (405)
Q Consensus 79 a~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~--~~~~~~~~ 148 (405)
|...+++.++.- ..+-...|..+ +..+...++...|.+.++.+.... ..|....+-.++.+. ...+..+.
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 888888876542 11223333333 333334479999999998886542 223333444444433 34565667
Q ss_pred HHHHHHHHHHcC---------CCCCHHHHHHHHHH--HHccCCHHHHHHHHHHHH
Q 035749 149 ASQLLELMIQIG---------VRPNAFVYNTLMDG--FCLTGRVNRAKELFVSME 192 (405)
Q Consensus 149 a~~~~~~~~~~~---------~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~ 192 (405)
+.+.++.+.... ..|-..++..++.. +...|+++.+...++++.
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777776663321 12345566666654 455677777777666653
No 319
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.71 E-value=2.6 Score=31.45 Aligned_cols=109 Identities=15% Similarity=0.023 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhc---CChHHH-------HHHHHHHHhCCCCCChHHHHHHHHH
Q 035749 35 TIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKE---GFVDKA-------KELLLQMKDKNINPDVVTYNSVIRG 104 (405)
Q Consensus 35 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a-------~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (405)
++.|.+.++.....+ |.|.+.++.-..++... .+..++ +.-|++.+..+ |....++..+..+
T Consensus 7 FE~ark~aea~y~~n-------P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~-P~~hdAlw~lGnA 78 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-------PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN-PNKHDALWCLGNA 78 (186)
T ss_dssp HHHHHHHHHHHHHH--------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-------cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 466777777766665 56677666555555443 333334 44444444432 2334666666666
Q ss_pred HHhcC----C-------HHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 105 FCYAN----D-------SNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 105 ~~~~~----~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
+...+ + +++|...|++.... .|+...|+.-+.... +|-++..++.+.
T Consensus 79 ~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 79 YTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 65443 2 34444444444443 566677766665542 344444444444
No 320
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.68 E-value=2.7 Score=27.85 Aligned_cols=74 Identities=5% Similarity=-0.011 Sum_probs=46.6
Q ss_pred HHHHHHHHhcCC--ChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHH
Q 035749 273 YRTFIDGLCKNG--YIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMI 347 (405)
Q Consensus 273 ~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 347 (405)
+..-...+.... |.-+..+-++.+......|++.+..+.+++|.+.+++.-|.++|+.+..+. .+....|..++
T Consensus 11 F~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~l 86 (108)
T PF02284_consen 11 FDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHH
T ss_pred HHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHH
Confidence 333333444433 333567777788888888999999999999999999999999999876542 22222565555
No 321
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.61 E-value=2.3 Score=34.75 Aligned_cols=51 Identities=8% Similarity=0.065 Sum_probs=33.1
Q ss_pred CCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 319 GRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 319 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
-++++++.++..-++.|+.||..+++.++..+.+.+++.+|.++.-.|+..
T Consensus 114 y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 114 YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred cChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 355666666666666666667777777777777777766666665555543
No 322
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.59 E-value=6.9 Score=35.35 Aligned_cols=26 Identities=23% Similarity=0.175 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHH
Q 035749 271 WAYRTFIDGLCKNGYIVEALELFRTL 296 (405)
Q Consensus 271 ~~~~~l~~~~~~~~~~~~a~~~~~~~ 296 (405)
.-+..+.++....+++..|.+.|.+.
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhh
Confidence 34444455555555555555544443
No 323
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.36 E-value=2 Score=35.09 Aligned_cols=103 Identities=15% Similarity=0.170 Sum_probs=59.5
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC---CCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchh
Q 035749 160 GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMG---CKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVV 236 (405)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 236 (405)
|.+....+...++.......+++.++..+-++.... ..++. +....++.+.+ -++++++.++..=+.-|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccchh
Confidence 334444455555555555666777777666665431 01111 11222333332 35567777776666677777777
Q ss_pred hHHHHHHHHHccccHHHHHHHHHHHHHc
Q 035749 237 TYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (405)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (405)
+++.++..+.+.+++..|..+.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 7777777777777777777776666544
No 324
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.35 E-value=1.7 Score=35.93 Aligned_cols=91 Identities=14% Similarity=0.035 Sum_probs=55.9
Q ss_pred HHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 035749 26 INGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGF 105 (405)
Q Consensus 26 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 105 (405)
...|.++|.+++|++.|.+.+... |.++.++..-..+|.+..++..|..-.......+ ..-+..|..-+.+-
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-------P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-------PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQAR 175 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-------CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHH
Confidence 345677788888888887777654 3466677777777777777777766666555432 11233444444444
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 035749 106 CYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~ 124 (405)
...|...+|.+-++..+..
T Consensus 176 ~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 176 ESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred HHHhhHHHHHHhHHHHHhh
Confidence 4556666666666665554
No 325
>PRK09687 putative lyase; Provisional
Probab=91.28 E-value=7.4 Score=32.08 Aligned_cols=137 Identities=12% Similarity=-0.025 Sum_probs=78.3
Q ss_pred chhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCC-ChHHHHHHHHHHHhcCCCccHHHHHHHH
Q 035749 234 TVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNG-YIVEALELFRTLRILKCELDIRSYSCLI 312 (405)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 312 (405)
+..+-...+.++.+.++ +.+...+..+... ++..+-...+.++.+.+ +.+.+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 44444555566666665 3455555555542 34455555555555543 23455555555553 45666667777
Q ss_pred HHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 035749 313 DGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCI 386 (405)
Q Consensus 313 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 386 (405)
.++.+.|+. .|...+-...+.+ + .....+.++...|.. +|...+..+.+. .||..+-...+.+|.
T Consensus 214 ~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 214 IGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 777777774 4554444444431 2 234566677777774 677777777764 346666555555553
No 326
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=91.25 E-value=0.36 Score=26.36 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=11.1
Q ss_pred HHHHHHcCCCHHHHHHHHHHHH
Q 035749 346 MIHALCADGKMDKAHDLFLDME 367 (405)
Q Consensus 346 l~~~~~~~g~~~~A~~~~~~~~ 367 (405)
+..+|...|+.+.|.+++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHH
Confidence 4445555555555555554443
No 327
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.19 E-value=0.45 Score=23.66 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHcCC
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMINGN 49 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 49 (405)
++..+..++.+.|++++|.+.|+++++..
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 34567788889999999999999999875
No 328
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=91.18 E-value=8.4 Score=32.56 Aligned_cols=99 Identities=9% Similarity=-0.006 Sum_probs=69.0
Q ss_pred CCChhHHHHHHHHHHhcCc------------hHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHH
Q 035749 16 EPNVITYSTLINGLCRTGH------------TIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELL 83 (405)
Q Consensus 16 ~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 83 (405)
|-|..+|..++..--..-. .+.-+.+++++++.+ +.+...+..++..+.+..+.+...+.+
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-------p~~~~L~l~~l~~~~~~~~~~~l~~~w 88 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-------PDSERLLLGYLEEGEKVWDSEKLAKKW 88 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5678889888865332211 345678899988875 567778888888888888888888888
Q ss_pred HHHHhCCCCCChHHHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 035749 84 LQMKDKNINPDVVTYNSVIRGFCYA---NDSNEAKRLFIEMM 122 (405)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~ 122 (405)
+++.... +-+...|...+...... -.+.....+|.+.+
T Consensus 89 e~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 89 EELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred HHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 8888763 44677777777655442 24556666665554
No 329
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=91.00 E-value=11 Score=33.40 Aligned_cols=94 Identities=14% Similarity=0.077 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHH--cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 035749 307 SYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALC--ADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLG 384 (405)
Q Consensus 307 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 384 (405)
.-+.++..+.+.|-..+|..++..+... ++|+...|..++..-. ..-+..-+..+++.|... +-.|+..|...+.-
T Consensus 462 l~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~-fg~d~~lw~~y~~~ 539 (568)
T KOG2396|consen 462 LKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE-FGADSDLWMDYMKE 539 (568)
T ss_pred hhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH-hCCChHHHHHHHHh
Confidence 3456677777888899999999988776 5567777777765432 222377788888888765 23678888887777
Q ss_pred HHccCchhHHHHHHHHhh
Q 035749 385 CIRNNETSKVVELLHRMD 402 (405)
Q Consensus 385 ~~~~g~~~~a~~~~~~~~ 402 (405)
-...|..+.+-.++.+..
T Consensus 540 e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 540 ELPLGRPENCGQIYWRAM 557 (568)
T ss_pred hccCCCcccccHHHHHHH
Confidence 778888777766665543
No 330
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.98 E-value=0.67 Score=23.29 Aligned_cols=30 Identities=27% Similarity=0.216 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCC
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGN 49 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 49 (405)
.+|..+...+...|++++|...|+++++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 467889999999999999999999998743
No 331
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.54 E-value=28 Score=37.49 Aligned_cols=322 Identities=13% Similarity=0.054 Sum_probs=169.0
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHcCCCCCccccccc-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHH
Q 035749 24 TLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPD-AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVI 102 (405)
Q Consensus 24 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 102 (405)
.+..+-.+.+.+.+|+-.++.-..... .+.. ...+..+...|..-++++...-+...-.. +...+. -|
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek-----~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~-qi 1456 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEK-----EKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQ-QI 1456 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccc-----hhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHH-HH
Confidence 455566788999999999998421110 1112 23344444599999999998888764221 223333 34
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHccCCH
Q 035749 103 RGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTL-MDGFCLTGRV 181 (405)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~ 181 (405)
......|++..|...|+.+.+.+.. ...+++.++......|.++..+...+-..... .+....++.+ ..+.-+.+++
T Consensus 1457 l~~e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qw 1534 (2382)
T KOG0890|consen 1457 LEHEASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQW 1534 (2382)
T ss_pred HHHHhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcch
Confidence 4466789999999999999987432 46778878887778888888887666555442 3334444333 4455677788
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHH--HHHHHhhcC--ChHHHHHHHHHHHhCCC--------CC-chhhHHHHHHHHHcc
Q 035749 182 NRAKELFVSMESMGCKHNVFSYSI--LINGYCKNK--EIEGALSLYSEMLSKGI--------KP-TVVTYNTLFIGLFEI 248 (405)
Q Consensus 182 ~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~--~~~~a~~~~~~~~~~~~--------~~-~~~~~~~l~~~~~~~ 248 (405)
+.....+. .. +...|.. ++....+.. +.-.-.+..+.+.+.-+ .- =...|..++....-.
T Consensus 1535 D~~e~~l~--~~-----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~ 1607 (2382)
T KOG0890|consen 1535 DLLESYLS--DR-----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL 1607 (2382)
T ss_pred hhhhhhhh--cc-----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH
Confidence 77777665 11 1222222 233333222 21111122222222110 10 012233333322211
Q ss_pred ccHHHHHHHHHHHHH-cCCCccHHHHHHHHHHHhcCCChHHHHHHHHH-HHhcCC-----CccHHHHHHHHHHHHhcCCH
Q 035749 249 HQVERAFKLFDEMQR-HGVAADTWAYRTFIDGLCKNGYIVEALELFRT-LRILKC-----ELDIRSYSCLIDGLCKSGRL 321 (405)
Q Consensus 249 ~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~-----~~~~~~~~~l~~~~~~~~~~ 321 (405)
.- +.-.+.+..... .....+...|..-+..-....+..+-+--+++ +..... .--...|...++.....|++
T Consensus 1608 el-~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~ 1686 (2382)
T KOG0890|consen 1608 EL-ENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHL 1686 (2382)
T ss_pred HH-HHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccH
Confidence 11 000111100000 00001111111111111111111111111111 111111 12346788888888899999
Q ss_pred HHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 322 KIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 322 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
+.|...+-.+.+.. -+..+--.+......|+...|+.++++-.+.
T Consensus 1687 q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1687 QRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 99988776666543 3345666777788999999999999998865
No 332
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.48 E-value=0.71 Score=25.20 Aligned_cols=26 Identities=23% Similarity=0.161 Sum_probs=21.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhhccCCC
Q 035749 310 CLIDGLCKSGRLKIAWELFHSLPRGV 335 (405)
Q Consensus 310 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 335 (405)
.++.+|...|+.+.|.++++++...+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 47788899999999999988887643
No 333
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.37 E-value=0.97 Score=22.68 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=17.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 035749 342 TYNIMIHALCADGKMDKAHDLFLDMEA 368 (405)
Q Consensus 342 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 368 (405)
+|..+...|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666666666666666666655
No 334
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.27 E-value=11 Score=32.32 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=32.2
Q ss_pred HHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 035749 25 LINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKD 88 (405)
Q Consensus 25 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 88 (405)
.+.+..+.|+++...+........ .++...+..+... ..++++++...++....
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--------~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--------SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--------ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 456777888888844444444321 2334444444433 77888888888777654
No 335
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=90.05 E-value=3.8 Score=31.67 Aligned_cols=59 Identities=15% Similarity=0.095 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 035749 64 TTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMD 123 (405)
Q Consensus 64 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (405)
+..++.+.+.++..+++...+.-.+.+ |.|...-..++..++-.|+|++|..-++-.-+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 344455556666666666666555543 44555566666666666666666655554433
No 336
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.95 E-value=17 Score=34.07 Aligned_cols=61 Identities=21% Similarity=0.079 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHhC
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGF-------VDKAKELLLQMKDK 89 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~ 89 (405)
.|. +|-.|.+.|++++|.++....... .......+...+..+....+ -++...-|++..+.
T Consensus 114 ~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~-------~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 114 IWA-LIYYCLRCGDYDEALEVANENRNQ-------FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHH-HHHHHHTTT-HHHHHHHHHHTGGG-------S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred cHH-HHHHHHhcCCHHHHHHHHHHhhhh-------hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 454 677788999999999999555443 24445667777777766422 23444555555544
No 337
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.77 E-value=4.4 Score=31.35 Aligned_cols=76 Identities=18% Similarity=0.202 Sum_probs=51.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHH
Q 035749 98 YNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIG--VRPNAFVYNTLMDG 174 (405)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 174 (405)
.+..+..+.+.+.+.+++...+.-.+..+. +...-..++..++-.|+|++|..-++.+-+.. ..+-...|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 344556677788888888888777766433 66666778888888888888888777765542 22334556666554
No 338
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.64 E-value=0.68 Score=22.98 Aligned_cols=27 Identities=19% Similarity=0.176 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 035749 63 YTTIIDGLCKEGFVDKAKELLLQMKDK 89 (405)
Q Consensus 63 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (405)
+..+..++.+.|++++|.+.|+++.+.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344555555666666666666666554
No 339
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.57 E-value=0.79 Score=21.51 Aligned_cols=18 Identities=28% Similarity=0.224 Sum_probs=7.5
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 035749 311 LIDGLCKSGRLKIAWELF 328 (405)
Q Consensus 311 l~~~~~~~~~~~~a~~~~ 328 (405)
+..++...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 334444444444444433
No 340
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=89.52 E-value=8.9 Score=30.26 Aligned_cols=121 Identities=11% Similarity=-0.070 Sum_probs=75.6
Q ss_pred HHHccccHHHHHHHHHHHHHcCCCccH-HHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHH
Q 035749 244 GLFEIHQVERAFKLFDEMQRHGVAADT-WAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLK 322 (405)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 322 (405)
-|.....++.|...|.+.+.. .|+. .-+..-+.++.+..+++.+..--.+.++.. +........+..+......++
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~-~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD-PNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC-hHHHHHHHHHHHHHHhhcccc
Confidence 355566788888888777765 3444 455666777778888888877777776653 333445566777777888888
Q ss_pred HHHHHHhhcc----CCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 035749 323 IAWELFHSLP----RGVLIADVVTYNIMIHALCADGKMDKAHDLFLDME 367 (405)
Q Consensus 323 ~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 367 (405)
+|+..+.+.. +..+.+-...+..|..+--..=...+..++.++..
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 8888887763 33334444555555544333334445555554443
No 341
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.48 E-value=2.9 Score=34.63 Aligned_cols=90 Identities=14% Similarity=0.042 Sum_probs=51.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 035749 103 RGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVN 182 (405)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 182 (405)
.-|.++|.+++|++.|...+... +.|..++..-..+|.+...+..|+.-....+..+ ..-...|..-+.+-...|...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence 34666777777777777666542 1266666666777777777776666666555443 222233444444444445555
Q ss_pred HHHHHHHHHHhc
Q 035749 183 RAKELFVSMESM 194 (405)
Q Consensus 183 ~a~~~~~~~~~~ 194 (405)
+|.+-++.....
T Consensus 183 EAKkD~E~vL~L 194 (536)
T KOG4648|consen 183 EAKKDCETVLAL 194 (536)
T ss_pred HHHHhHHHHHhh
Confidence 555555555544
No 342
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=89.35 E-value=10 Score=30.70 Aligned_cols=126 Identities=13% Similarity=0.017 Sum_probs=71.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC-----C-CCC-------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc
Q 035749 63 YTTIIDGLCKEGFVDKAKELLLQMKDKN-----I-NPD-------VVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPN 129 (405)
Q Consensus 63 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 129 (405)
.....+.+.-..++..|++..++..+.= . .++ ......-|++++..|+|.+++.+.-+.-+.--+..
T Consensus 38 Le~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklP 117 (309)
T PF07163_consen 38 LEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLP 117 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCC
Confidence 3333444445567777777766654320 0 111 11122346777788888888776655544322223
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-----HccCCHHHHHHHH
Q 035749 130 VVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGF-----CLTGRVNRAKELF 188 (405)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~ 188 (405)
.......|-.|.+.+.+..+.++-..-++..-..+..-|..++..| .-.|.+++|+++.
T Consensus 118 pkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 118 PKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 4455556667778888877777777666543333334455555444 3457777777766
No 343
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.15 E-value=10 Score=30.46 Aligned_cols=202 Identities=11% Similarity=0.092 Sum_probs=102.0
Q ss_pred CCCCChHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCccHh---hHHHHHHHHHcCCCHHHHHHHHHHHHHc---CC-
Q 035749 90 NINPDVVTYNSVIRGF-CYANDSNEAKRLFIEMMDQGVQPNVV---TFSVIMDELCKNGKMEEASQLLELMIQI---GV- 161 (405)
Q Consensus 90 ~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~- 161 (405)
+..||+..-+..-.+- .+..++++|+.-|++.++.......+ +...++....+.+++++....+.+++.- .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 3355555443322211 23346778888888777653332332 3445667777788888887777776532 11
Q ss_pred -CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-CCCCCh----hhHHHHHHHHhhcCChHHHHHHHHHHHhCCCC---
Q 035749 162 -RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESM-GCKHNV----FSYSILINGYCKNKEIEGALSLYSEMLSKGIK--- 232 (405)
Q Consensus 162 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--- 232 (405)
.-+..+.+.++.......+.+-...+|+.-.+. .-..+. .+-..|...|...+++.+..+++.++....-.
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 123445556665555555555555544432211 001111 12245666666677777777777666553111
Q ss_pred -Cc-------hhhHHHHHHHHHccccHHHHHHHHHHHHHc-CCCccHHHHHHHHH----HHhcCCChHHHHH
Q 035749 233 -PT-------VVTYNTLFIGLFEIHQVERAFKLFDEMQRH-GVAADTWAYRTFID----GLCKNGYIVEALE 291 (405)
Q Consensus 233 -~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~----~~~~~~~~~~a~~ 291 (405)
.| ...|..-++.|....+-.+...++++.+.. ..-|.+.....+-. ...+.|++++|..
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 11 123444555566666666666666655432 12344444333322 2344566666543
No 344
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=89.15 E-value=7.4 Score=29.19 Aligned_cols=13 Identities=15% Similarity=0.133 Sum_probs=5.7
Q ss_pred CCchhhHHHHHHH
Q 035749 232 KPTVVTYNTLFIG 244 (405)
Q Consensus 232 ~~~~~~~~~l~~~ 244 (405)
.|+...|+.-+..
T Consensus 110 ~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 110 DPNNELYRKSLEM 122 (186)
T ss_dssp -TT-HHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 4555555554443
No 345
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.64 E-value=19 Score=32.81 Aligned_cols=151 Identities=19% Similarity=0.125 Sum_probs=94.4
Q ss_pred HhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcC
Q 035749 30 CRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYAN 109 (405)
Q Consensus 30 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 109 (405)
.-.|+++.|..++..+. -...+.++..+.++|-.++|+++- +|+... .....+.|
T Consensus 597 vmrrd~~~a~~vLp~I~-------------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lg 651 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIP-------------KEIRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLG 651 (794)
T ss_pred hhhccccccccccccCc-------------hhhhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcC
Confidence 34567776666444332 334566667777777777776542 222221 12244678
Q ss_pred CHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 035749 110 DSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFV 189 (405)
Q Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 189 (405)
+++.|.++..+.. +..-|..|..+..+.+++..|.+.|.+... |..|+-.+...|+-+....+-.
T Consensus 652 rl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~ 716 (794)
T KOG0276|consen 652 RLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLAS 716 (794)
T ss_pred cHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHH
Confidence 8888877766543 566788888888888888888888876653 3456666777777776666666
Q ss_pred HHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHH
Q 035749 190 SMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEM 226 (405)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 226 (405)
...+.| ..+. -..+|...|+++++.+++..-
T Consensus 717 ~~~~~g-~~N~-----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 717 LAKKQG-KNNL-----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHhhc-ccch-----HHHHHHHcCCHHHHHHHHHhc
Confidence 666665 2222 233556678888887777554
No 346
>PRK11619 lytic murein transglycosylase; Provisional
Probab=88.20 E-value=23 Score=33.35 Aligned_cols=310 Identities=8% Similarity=-0.027 Sum_probs=141.3
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccH-hhHHHHHHHHHcCCCHHH
Q 035749 70 LCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNV-VTFSVIMDELCKNGKMEE 148 (405)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ 148 (405)
..+.|++..+.++...+....+ ..-..|..+... ......++....+++.. -.|-. ..-...+..+.+.+++..
T Consensus 43 a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~-l~~~~~~ev~~Fl~~~~---~~P~~~~Lr~~~l~~La~~~~w~~ 117 (644)
T PRK11619 43 AWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQD-LMNQPAVQVTNFIRANP---TLPPARSLQSRFVNELARREDWRG 117 (644)
T ss_pred HHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhc-cccCCHHHHHHHHHHCC---CCchHHHHHHHHHHHHHHccCHHH
Confidence 4567888888777776643211 111222222221 11223444444433322 12222 222334445566778877
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHH--HHHHHHHH
Q 035749 149 ASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEG--ALSLYSEM 226 (405)
Q Consensus 149 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--a~~~~~~~ 226 (405)
....+. . .+.+...-.....+....|+.++|....+.+=-.| ...+...+.++..+.+.|.... ..+-++.+
T Consensus 118 ~~~~~~----~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~a 191 (644)
T PRK11619 118 LLAFSP----E-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQDPLAYLERIRLA 191 (644)
T ss_pred HHHhcC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 666331 1 14555555677778888898887776666654333 3445566667766665554332 22222222
Q ss_pred HhCCCCCchhhHHHHHHHHHc------------cccHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHhcCCChHHHHH
Q 035749 227 LSKGIKPTVVTYNTLFIGLFE------------IHQVERAFKLFDEMQRHGVAADTWA---YRTFIDGLCKNGYIVEALE 291 (405)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~ 291 (405)
...| +......+...+.. ..++..+...+. .++++... ....+.-+ ...+.+.|..
T Consensus 192 l~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~-----~~~~~~~~~~~~~~~l~Rl-ar~d~~~A~~ 262 (644)
T PRK11619 192 MKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFAR-----TTGPTDFTRQMAAVAFASV-ARQDAENARL 262 (644)
T ss_pred HHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhh-----ccCCChhhHHHHHHHHHHH-HHhCHHHHHH
Confidence 2222 11111122111100 011111111111 01122211 11112222 2345577777
Q ss_pred HHHHHHhcC-CCccH--HHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 035749 292 LFRTLRILK-CELDI--RSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEA 368 (405)
Q Consensus 292 ~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 368 (405)
++....... ..+.. .+...++......+...+|...+....... .+......-+..-...++++.+...+..|-.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~ 340 (644)
T PRK11619 263 MIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPM 340 (644)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCH
Confidence 777653332 11111 122333333333322445555555544321 2333444444455567777777777776644
Q ss_pred CCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhh
Q 035749 369 KGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMD 402 (405)
Q Consensus 369 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 402 (405)
. ..-...-.--+.+++...|+.++|...|+++.
T Consensus 341 ~-~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 341 E-AKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred h-hccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3 12222333344566666777777777777653
No 347
>PRK09687 putative lyase; Provisional
Probab=88.12 E-value=14 Score=30.57 Aligned_cols=60 Identities=7% Similarity=0.022 Sum_probs=28.9
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCH----HHHHHHHHHH
Q 035749 58 PDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDS----NEAKRLFIEM 121 (405)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~ 121 (405)
++..+....+..+...|. +.+...+..+... ++...-...+.++...|+. .++...+..+
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 344455555555555553 3333334344332 3445555555555555542 3455555554
No 348
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=87.92 E-value=2.2 Score=26.73 Aligned_cols=56 Identities=11% Similarity=0.047 Sum_probs=40.8
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHH
Q 035749 24 TLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLL 84 (405)
Q Consensus 24 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 84 (405)
..++.| ..++.++|+..|+.+++...+ .+.--.++..++.+++..|++.++++.-.
T Consensus 12 ~GlkLY-~~~~~~~Al~~W~~aL~k~~~----~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 12 KGLKLY-HQNETQQALQKWRKALEKITD----REDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred HHHHHh-ccchHHHHHHHHHHHHhhcCC----hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345544 788899999999999987521 11123477888899999999998877643
No 349
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=87.78 E-value=19 Score=31.79 Aligned_cols=125 Identities=12% Similarity=0.081 Sum_probs=80.2
Q ss_pred HHHHHhcCChHHHHH-HHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCC
Q 035749 67 IDGLCKEGFVDKAKE-LLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGK 145 (405)
Q Consensus 67 ~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 145 (405)
|.--...|+...|-+ ++..++.. +.++.............|+++.+...+...... +.....+...+++...+.|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~--~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQ--QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 344445677666654 44444433 334444444445566788899888887665543 33356677788888888999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 035749 146 MEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMG 195 (405)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 195 (405)
++.|...-..|+...+. ++.+.....-.....|-++++.-.++++...+
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 99999988888876543 33443333334455677888888888887665
No 350
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=87.76 E-value=13 Score=30.09 Aligned_cols=132 Identities=11% Similarity=0.052 Sum_probs=87.1
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHcCCCCCccccccc-------HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 035749 22 YSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPD-------AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPD 94 (405)
Q Consensus 22 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 94 (405)
...-.+.+.-..||..|++..++..+.-......-.+. ......=|++++..++|.+++...-+.-+.--+..
T Consensus 38 Le~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklP 117 (309)
T PF07163_consen 38 LEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLP 117 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCC
Confidence 33444556667899999999988776431110000111 11233447889999999999988766654422334
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHH-----HcCCCHHHHHHHH
Q 035749 95 VVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDEL-----CKNGKMEEASQLL 153 (405)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~ 153 (405)
+.+...-|-.|.+.+.+..+.++-...++..-.-+..-|..++..| .-.|.+++|+++.
T Consensus 118 pkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 118 PKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 5666677778999999999999988887753333344466666555 4579999999887
No 351
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=87.66 E-value=12 Score=29.53 Aligned_cols=85 Identities=13% Similarity=-0.060 Sum_probs=47.2
Q ss_pred HHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhc
Q 035749 29 LCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYA 108 (405)
Q Consensus 29 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 108 (405)
|.....+..|+.-|.+++..+ |..+.-|..-+.++.+..+++.+..--.+.++.. +..+.....+..+....
T Consensus 20 ~f~~k~y~~ai~~y~raI~~n-------P~~~~Y~tnralchlk~~~~~~v~~dcrralql~-~N~vk~h~flg~~~l~s 91 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICIN-------PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD-PNLVKAHYFLGQWLLQS 91 (284)
T ss_pred ccchhhhchHHHHHHHHHhcC-------CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC-hHHHHHHHHHHHHHHhh
Confidence 334455666666666666643 2233455566666666666666666655555541 22233344455555566
Q ss_pred CCHHHHHHHHHHH
Q 035749 109 NDSNEAKRLFIEM 121 (405)
Q Consensus 109 ~~~~~a~~~~~~~ 121 (405)
..+++|+..+.+.
T Consensus 92 ~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 92 KGYDEAIKVLQRA 104 (284)
T ss_pred ccccHHHHHHHHH
Confidence 6666666666655
No 352
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.27 E-value=0.24 Score=35.94 Aligned_cols=84 Identities=13% Similarity=0.091 Sum_probs=49.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCC
Q 035749 66 IIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGK 145 (405)
Q Consensus 66 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 145 (405)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..+.++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 44555556677777777777776554556777777777777776666666655511 11222345566666666
Q ss_pred HHHHHHHHHHH
Q 035749 146 MEEASQLLELM 156 (405)
Q Consensus 146 ~~~a~~~~~~~ 156 (405)
++++.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666655543
No 353
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=86.94 E-value=16 Score=30.27 Aligned_cols=51 Identities=10% Similarity=-0.068 Sum_probs=25.1
Q ss_pred CChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC
Q 035749 74 GFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCY----ANDSNEAKRLFIEMMDQGVQ 127 (405)
Q Consensus 74 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~ 127 (405)
.+...|.++|....+.| .+.....|...+.. ..+..+|..+|++..+.|..
T Consensus 91 ~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~ 145 (292)
T COG0790 91 RDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNV 145 (292)
T ss_pred ccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCCh
Confidence 34555666666555444 22333334444433 22556666666666655544
No 354
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=86.69 E-value=16 Score=29.88 Aligned_cols=115 Identities=10% Similarity=0.058 Sum_probs=64.7
Q ss_pred ChHHHHHHHHHHHh-CCCCCChHHHHHHHHHHHhcC--CHHHHHHHHHHHHH-CCCCccHhhHHHHHHHHHcCCCHHHHH
Q 035749 75 FVDKAKELLLQMKD-KNINPDVVTYNSVIRGFCYAN--DSNEAKRLFIEMMD-QGVQPNVVTFSVIMDELCKNGKMEEAS 150 (405)
Q Consensus 75 ~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~ 150 (405)
...+|+.+|+..-. ..+-.|..+...+++...... ....-.++.+-+.. .+..++..+...++..++..++|.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 35566666663211 223446666666766665522 12222222222322 234556666667777777777777777
Q ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 035749 151 QLLELMIQI-GVRPNAFVYNTLMDGFCLTGRVNRAKELFV 189 (405)
Q Consensus 151 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 189 (405)
++++..... +...|...|..+++.....|+..-..++..
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 777766554 445566677777777777777655555444
No 355
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.26 E-value=0.61 Score=38.39 Aligned_cols=88 Identities=20% Similarity=0.143 Sum_probs=40.5
Q ss_pred cCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHH
Q 035749 73 EGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQL 152 (405)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 152 (405)
.|.++.|++.|...+..+ ++....|..-...+.+.+.+..|++-+...+..+.. +..-|-.--.+....|+|+++.+.
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHHHH
Confidence 344555555555555443 334444444445555555555555555544443211 112222222333334555555555
Q ss_pred HHHHHHcCCC
Q 035749 153 LELMIQIGVR 162 (405)
Q Consensus 153 ~~~~~~~~~~ 162 (405)
+....+.++.
T Consensus 205 l~~a~kld~d 214 (377)
T KOG1308|consen 205 LALACKLDYD 214 (377)
T ss_pred HHHHHhcccc
Confidence 5555555443
No 356
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=86.10 E-value=17 Score=29.60 Aligned_cols=23 Identities=26% Similarity=0.249 Sum_probs=15.8
Q ss_pred HHHHHHHhhcCChHHHHHHHHHH
Q 035749 204 SILINGYCKNKEIEGALSLYSEM 226 (405)
Q Consensus 204 ~~l~~~~~~~~~~~~a~~~~~~~ 226 (405)
..++..+.+.|.+.+|+.+...+
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHH
Confidence 34667777888888877766544
No 357
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.07 E-value=17 Score=29.69 Aligned_cols=57 Identities=18% Similarity=0.146 Sum_probs=33.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 035749 134 SVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSM 191 (405)
Q Consensus 134 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 191 (405)
....+.|...|.+.+|.++.++.+..+ +.+...+..++..+...|+--.+.+-++++
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344455666666666666666666554 555555666666666666655555555544
No 358
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=85.87 E-value=8 Score=25.64 Aligned_cols=86 Identities=13% Similarity=0.127 Sum_probs=49.6
Q ss_pred chHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHH
Q 035749 34 HTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNE 113 (405)
Q Consensus 34 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 113 (405)
..++|..+-+.+...+ .....+-..-+..+...|++++|..+.+.+ ..||...|..|.. .+.|--.+
T Consensus 20 cHqEA~tIAdwL~~~~-------~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~ 86 (115)
T TIGR02508 20 CHQEANTIADWLHLKG-------ESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSA 86 (115)
T ss_pred HHHHHHHHHHHHhcCC-------chHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHH
Confidence 3566766666665432 111222222334566788888888877655 2567777766544 35666666
Q ss_pred HHHHHHHHHHCCCCccHhhH
Q 035749 114 AKRLFIEMMDQGVQPNVVTF 133 (405)
Q Consensus 114 a~~~~~~~~~~~~~~~~~~~ 133 (405)
+...+..+-..|. |....|
T Consensus 87 l~~rl~rla~sg~-p~lq~F 105 (115)
T TIGR02508 87 LESRLNRLAASGD-PRLQTF 105 (115)
T ss_pred HHHHHHHHHhCCC-HHHHHH
Confidence 7777767766653 344444
No 359
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.48 E-value=33 Score=32.30 Aligned_cols=195 Identities=14% Similarity=0.155 Sum_probs=112.0
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccc--cHHHHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCC
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKP--DAVIYTTIIDGLC-KEGFVDKAKELLLQMKDKNINPD 94 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~ 94 (405)
+...|..+|. .|+.-++.+.+... .+| ...++..++..+. ...+++.|...+++.....-.++
T Consensus 29 ~l~~Y~kLI~---------~ai~CL~~~~~~~~-----l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~ 94 (608)
T PF10345_consen 29 QLKQYYKLIA---------TAIKCLEAVLKQFK-----LSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHR 94 (608)
T ss_pred hHHHHHHHHH---------HHHHHHHHHhccCC-----CCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 4445666654 45667777764321 344 3446777777777 67899999999998765432322
Q ss_pred hH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCccHhhHHHH-HHHHHcCCCHHHHHHHHHHHHHcC---C
Q 035749 95 VV-----TYNSVIRGFCYANDSNEAKRLFIEMMDQ----GVQPNVVTFSVI-MDELCKNGKMEEASQLLELMIQIG---V 161 (405)
Q Consensus 95 ~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~ 161 (405)
.. +...++..+.+.+... |...+++.++. +..+-...|..+ +..+...+++..|.+.++.+.... .
T Consensus 95 ~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~ 173 (608)
T PF10345_consen 95 LTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRG 173 (608)
T ss_pred hHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcC
Confidence 21 2234566666666555 88888887654 122223333333 223333479999999998876642 2
Q ss_pred CCCHHHHHHHHHH--HHccCCHHHHHHHHHHHHhcC---------CCCChhhHHHHHHHH--hhcCChHHHHHHHHHHH
Q 035749 162 RPNAFVYNTLMDG--FCLTGRVNRAKELFVSMESMG---------CKHNVFSYSILINGY--CKNKEIEGALSLYSEML 227 (405)
Q Consensus 162 ~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~ 227 (405)
.+-..++..++.+ ....+..+++.+.++.+.... ..|...+|..++..+ ...|+++.+...++++.
T Consensus 174 d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 174 DPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444443 344565677777777663321 123455666666554 45677667666655543
No 360
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.16 E-value=18 Score=29.13 Aligned_cols=190 Identities=13% Similarity=0.112 Sum_probs=117.0
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChH---HHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC--CccHhhHHHHHHHHHcC
Q 035749 72 KEGFVDKAKELLLQMKDKNINPDVV---TYNSVIRGFCYANDSNEAKRLFIEMMDQ---GV--QPNVVTFSVIMDELCKN 143 (405)
Q Consensus 72 ~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~ 143 (405)
+...+++|+.-|++..+....-..+ +...++....+.+++++....|.+++.. .+ .-+....+.++..-+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 4467899999999988763222333 3445678888999999999988888642 11 12445566666666655
Q ss_pred CCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC-----------CCChhhHHHHH
Q 035749 144 GKMEEASQLLELMIQI-----GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGC-----------KHNVFSYSILI 207 (405)
Q Consensus 144 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~~~~~l~ 207 (405)
.+.+....+++.-+.. +-..--.+-..+...|...+++.+..++++++...-- ..-...|..=+
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 5655555554433221 0011112334677888888999999999888865311 11234677778
Q ss_pred HHHhhcCChHHHHHHHHHHHhC-CCCCchhhHHHHH----HHHHccccHHHHHHHHHHH
Q 035749 208 NGYCKNKEIEGALSLYSEMLSK-GIKPTVVTYNTLF----IGLFEIHQVERAFKLFDEM 261 (405)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~ 261 (405)
+.|...++-.....+|++.+.. ..-|.+.....+- ....+.|++++|..-|-++
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHH
Confidence 8888888888888888876542 2234444333221 2234667888776544433
No 361
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=85.08 E-value=22 Score=30.07 Aligned_cols=99 Identities=9% Similarity=-0.011 Sum_probs=56.0
Q ss_pred cccHHHHHHHHHHHHhcCC------------hHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 57 KPDAVIYTTIIDGLCKEGF------------VDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
|.|..+|..++..--..-. .+.-+.+++++.+.+ +.+...+..++..+.+..+.++..+-++++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 6678888888765433211 344556666666653 445566666666666666666666677777665
Q ss_pred CCCccHhhHHHHHHHHHc---CCCHHHHHHHHHHHH
Q 035749 125 GVQPNVVTFSVIMDELCK---NGKMEEASQLLELMI 157 (405)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~ 157 (405)
.+. +...|...+..... .-.++....+|.+.+
T Consensus 95 ~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 95 NPG-SPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred CCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 322 45555555544332 223455555554443
No 362
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.73 E-value=20 Score=29.32 Aligned_cols=59 Identities=14% Similarity=0.042 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhh
Q 035749 343 YNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMD 402 (405)
Q Consensus 343 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 402 (405)
++.....|..+|.+.+|.++.++.+.. -+.+...+..++..+...|+--.|.+-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltl-dpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTL-DPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhc-ChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 444555666777777777777777664 23455566666677777777666666666553
No 363
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=84.57 E-value=8.4 Score=26.79 Aligned_cols=44 Identities=5% Similarity=-0.009 Sum_probs=22.7
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 035749 289 ALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLP 332 (405)
Q Consensus 289 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 332 (405)
..+-++.+...++.|++.+....+++|.+.+++..|.++|+-+.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33444444444455555555555555555555555555555444
No 364
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.01 E-value=39 Score=31.96 Aligned_cols=105 Identities=16% Similarity=0.130 Sum_probs=67.5
Q ss_pred HHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 035749 26 INGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGF 105 (405)
Q Consensus 26 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 105 (405)
++.+.+.+.+++|+++-+.....-+. -.-.......|..+.-.|++++|-...-.|... +..-|...+..+
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~-----~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f 433 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEER-----FVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKF 433 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccc-----cchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHh
Confidence 56677888999998888776554210 013567788888888999999999888888764 566676666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHc
Q 035749 106 CYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCK 142 (405)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (405)
...++......+ +.......+...|..++..+..
T Consensus 434 ~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 434 AELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 666654433222 2222222345566666666554
No 365
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=83.93 E-value=4 Score=25.63 Aligned_cols=46 Identities=7% Similarity=0.065 Sum_probs=24.9
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCchhHHHHH
Q 035749 352 ADGKMDKAHDLFLDMEAKGVAPD--CVAFNTLMLGCIRNNETSKVVEL 397 (405)
Q Consensus 352 ~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~ 397 (405)
...+.++|+..|+..++.-..+. ..++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666665422211 12444555666666666665554
No 366
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=83.60 E-value=32 Score=30.75 Aligned_cols=178 Identities=15% Similarity=0.169 Sum_probs=87.8
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 035749 93 PDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLM 172 (405)
Q Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 172 (405)
.|.....+++..+..+..+.-...+..+|+..| .+...+..++.+|... ..+.-..+|+++.+..+ .|+..-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHH
Confidence 344555556666666666666666666666543 2455566666666655 44555666666665532 1222233333
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCC-----ChhhHHHHHHHHhhcCChHHHHHHHHHHHhC-CCCCchhhHHHHHHHHH
Q 035749 173 DGFCLTGRVNRAKELFVSMESMGCKH-----NVFSYSILINGYCKNKEIEGALSLYSEMLSK-GIKPTVVTYNTLFIGLF 246 (405)
Q Consensus 173 ~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 246 (405)
..|.+ ++.+.+...|.++...-++. -...|..+.... ..+.+..+.+..++... |...-...+..+...|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 33333 55566666666655432221 111333333211 23445555555544432 22223334444445555
Q ss_pred ccccHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 035749 247 EIHQVERAFKLFDEMQRHGVAADTWAYRTFID 278 (405)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 278 (405)
...++.+|++++..+.+++ ..|......++.
T Consensus 217 ~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~ 247 (711)
T COG1747 217 ENENWTEAIRILKHILEHD-EKDVWARKEIIE 247 (711)
T ss_pred cccCHHHHHHHHHHHhhhc-chhhhHHHHHHH
Confidence 6666666666666666554 344444444443
No 367
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=83.29 E-value=33 Score=30.67 Aligned_cols=180 Identities=11% Similarity=0.101 Sum_probs=124.3
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHH
Q 035749 57 KPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVI 136 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (405)
+.+......++..+..+..+.-...+..+|...| -+-..|..++.+|... ..++-..+++++.+..+. +...-..+
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 4566677788888888888888888999998875 4678888999999888 567788899988887554 44444455
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCC--C---HHHHHHHHHHHHccCCHHHHHHHHHHHHhc-CCCCChhhHHHHHHHH
Q 035749 137 MDELCKNGKMEEASQLLELMIQIGVRP--N---AFVYNTLMDGFCLTGRVNRAKELFVSMESM-GCKHNVFSYSILINGY 210 (405)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 210 (405)
+..|- .++.+.+...|.++...-++. + ...|..+... -..+.+....+...+... |...-...+.-+-.-|
T Consensus 139 a~~yE-kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYE-KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 55554 488899999999887663321 1 2244444431 234677777777777543 3333455666666788
Q ss_pred hhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHH
Q 035749 211 CKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIG 244 (405)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (405)
....++++|++++..+.+.+ ..|...-..++.-
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~ 248 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIEN 248 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHH
Confidence 88999999999999988874 2344444444443
No 368
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=82.72 E-value=9 Score=34.57 Aligned_cols=87 Identities=18% Similarity=0.189 Sum_probs=41.5
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHH
Q 035749 142 KNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALS 221 (405)
Q Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 221 (405)
-.|+...|.+.+.................|.+...+.|....|..++.+..... ...+.++..+.+++.-..+.+.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 345555555555544432111111222334444444455555555555544443 2334444555555555556666666
Q ss_pred HHHHHHhC
Q 035749 222 LYSEMLSK 229 (405)
Q Consensus 222 ~~~~~~~~ 229 (405)
.|++..+.
T Consensus 698 ~~~~a~~~ 705 (886)
T KOG4507|consen 698 AFRQALKL 705 (886)
T ss_pred HHHHHHhc
Confidence 66655554
No 369
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=82.13 E-value=3 Score=19.78 Aligned_cols=30 Identities=20% Similarity=0.197 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCC
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGN 49 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 49 (405)
.+|..+...+...|+++.|...|+..++..
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 357788889999999999999999988754
No 370
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=81.93 E-value=26 Score=28.53 Aligned_cols=28 Identities=25% Similarity=0.062 Sum_probs=20.0
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 035749 303 LDIRSYSCLIDGLCKSGRLKIAWELFHS 330 (405)
Q Consensus 303 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 330 (405)
-++.....++..|.+.|++.+|...|-.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 3667778888888888988888877643
No 371
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.35 E-value=43 Score=30.52 Aligned_cols=164 Identities=10% Similarity=-0.014 Sum_probs=98.2
Q ss_pred HhcCchHHHHHHHHHHHcCCCCCccc-----ccccHHHHHHHHHHHHhcCChHHHHHHHHHHH-------hCCC------
Q 035749 30 CRTGHTIVALNLFEEMINGNGEFGVV-----CKPDAVIYTTIIDGLCKEGFVDKAKELLLQMK-------DKNI------ 91 (405)
Q Consensus 30 ~~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~------ 91 (405)
.+.+.+++|...|.-+.......++. .|-...+...+..++..+|+.+.+-+++++.+ ...+
T Consensus 249 ~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~ 328 (665)
T KOG2422|consen 249 EHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGN 328 (665)
T ss_pred ecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccc
Confidence 34567788888888887765433221 23456677788888889999887777666542 2111
Q ss_pred -------CCChHHHHHH---HHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHH-cCCCHHHHHHHHHHHHHcC
Q 035749 92 -------NPDVVTYNSV---IRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELC-KNGKMEEASQLLELMIQIG 160 (405)
Q Consensus 92 -------~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~ 160 (405)
+-|...|.+| ++.+.+.|-+..|.++.+-+.+..+.-|+.....++..|+ +..++.-.+++++.....+
T Consensus 329 cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n 408 (665)
T KOG2422|consen 329 CRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMN 408 (665)
T ss_pred ccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Confidence 1123333333 3445677888888888888877765556666666777664 5566777777766654332
Q ss_pred ---CCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHh
Q 035749 161 ---VRPNAFVYNTLMDGFCLTGR---VNRAKELFVSMES 193 (405)
Q Consensus 161 ---~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~ 193 (405)
.-|+...-.+++..|..... -..|...+.++..
T Consensus 409 ~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 409 KLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALK 447 (665)
T ss_pred cHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Confidence 23444444455555555544 3344444444443
No 372
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=81.30 E-value=9.6 Score=29.32 Aligned_cols=51 Identities=18% Similarity=0.068 Sum_probs=33.8
Q ss_pred hcCCHHHHH---HHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 317 KSGRLKIAW---ELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 317 ~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
...+.+... +..++..+ ..|++.+|..++.++...|+.++|.+..+++...
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~--~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLR--RRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444444333 33344444 3578888888888888888888888888887764
No 373
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=80.77 E-value=17 Score=25.44 Aligned_cols=57 Identities=11% Similarity=0.167 Sum_probs=44.1
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHH
Q 035749 4 AALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTII 67 (405)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 67 (405)
.+.++.+...++-|++.....-++++.+-+|+..|+.+|+-+...- .+.-..|-.++
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~-------g~~k~~Y~y~v 125 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC-------GAQKQVYPYYV 125 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc-------ccHHHHHHHHH
Confidence 3455666677888999999999999999999999999999987653 34334455554
No 374
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=80.33 E-value=43 Score=29.92 Aligned_cols=96 Identities=14% Similarity=0.145 Sum_probs=72.6
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh--cCCHHHHHHHHhhccCCCcCccHHHHHHHHHH
Q 035749 272 AYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCK--SGRLKIAWELFHSLPRGVLIADVVTYNIMIHA 349 (405)
Q Consensus 272 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 349 (405)
.-+.++..+.+.|-..+|...+..+.... ||+...+..+++.-.. .-+...+..+++.+...- -.|+..|-..+..
T Consensus 462 l~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~f-g~d~~lw~~y~~~ 539 (568)
T KOG2396|consen 462 LKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREF-GADSDLWMDYMKE 539 (568)
T ss_pred hhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHh-CCChHHHHHHHHh
Confidence 34556677778889999999999998875 7788888888775322 223777888888876542 2588889888887
Q ss_pred HHcCCCHHHHHHHHHHHHhC
Q 035749 350 LCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 350 ~~~~g~~~~A~~~~~~~~~~ 369 (405)
-...|+.+.+-.++.++.+.
T Consensus 540 e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 540 ELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred hccCCCcccccHHHHHHHHh
Confidence 77899999888888777664
No 375
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=80.22 E-value=43 Score=29.85 Aligned_cols=110 Identities=14% Similarity=0.010 Sum_probs=69.6
Q ss_pred HHHHhhcCChHHHHHHHHHHHhC---CC--CCc---hhhHHHHHHHHHccccHHHHHHHHHHHHH-------cCCCccH-
Q 035749 207 INGYCKNKEIEGALSLYSEMLSK---GI--KPT---VVTYNTLFIGLFEIHQVERAFKLFDEMQR-------HGVAADT- 270 (405)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~~~---~~--~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~- 270 (405)
-+.+.-.|++.+|.+++...--. |. .|. -..++.+.-.+.+.+.+..+..+|.+..+ .|+.|.+
T Consensus 247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 34566678999998887654221 21 121 11235566566677777777777766653 3433321
Q ss_pred ---------HHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 035749 271 ---------WAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCK 317 (405)
Q Consensus 271 ---------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (405)
.......-.|...|++-.|.+.|......- ..++..|..++.+|..
T Consensus 327 ~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf-h~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 327 FTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF-HRNPRLWLRLAECCIM 381 (696)
T ss_pred eehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHH
Confidence 223334456778899999999998887653 5678889999888864
No 376
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=79.88 E-value=55 Score=30.86 Aligned_cols=89 Identities=9% Similarity=0.047 Sum_probs=36.6
Q ss_pred HHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcC-CCccHHHHHHHHHHHhc---
Q 035749 207 INGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHG-VAADTWAYRTFIDGLCK--- 282 (405)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~--- 282 (405)
...+.-.|+++.|++.+-. ..+...+...+...+..|.-..-..... ..+.... -.|.+-.+..++..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 4455667888888888766 1122334444444433322211111111 2222111 01112446666766654
Q ss_pred CCChHHHHHHHHHHHhcC
Q 035749 283 NGYIVEALELFRTLRILK 300 (405)
Q Consensus 283 ~~~~~~a~~~~~~~~~~~ 300 (405)
..+...|.+++-.+....
T Consensus 340 ~td~~~Al~Y~~li~~~~ 357 (613)
T PF04097_consen 340 ITDPREALQYLYLICLFK 357 (613)
T ss_dssp TT-HHHHHHHHHGGGGS-
T ss_pred ccCHHHHHHHHHHHHHcC
Confidence 467778888777665543
No 377
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=79.56 E-value=9.3 Score=30.83 Aligned_cols=78 Identities=13% Similarity=0.077 Sum_probs=51.5
Q ss_pred HHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHh----CC-CCCChHHHHHHHHHHHhcCCH
Q 035749 37 VALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKD----KN-INPDVVTYNSVIRGFCYANDS 111 (405)
Q Consensus 37 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~ 111 (405)
.|...|...... .-....-..+...|.+.|++++|.++|+.+.. .| ..+...+...+..++...|+.
T Consensus 163 ~A~~~f~~~~~~--------R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~ 234 (247)
T PF11817_consen 163 KAYEQFKKYGQN--------RMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDV 234 (247)
T ss_pred HHHHHHHHhccc--------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence 455555554432 34566667788888888888888888887642 22 234556666777778888888
Q ss_pred HHHHHHHHHHH
Q 035749 112 NEAKRLFIEMM 122 (405)
Q Consensus 112 ~~a~~~~~~~~ 122 (405)
+..+.+.-++.
T Consensus 235 ~~~l~~~leLl 245 (247)
T PF11817_consen 235 EDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHh
Confidence 87777655543
No 378
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=78.30 E-value=17 Score=32.92 Aligned_cols=86 Identities=13% Similarity=0.063 Sum_probs=42.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHH
Q 035749 178 TGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKL 257 (405)
Q Consensus 178 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 257 (405)
.|+...|..++..+..............|.+...+.|-..+|..++.+.+... ...+-++..+..++....+.+.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 35555555555554433211122233344445555555555655555555432 22334445555566666666666666
Q ss_pred HHHHHHc
Q 035749 258 FDEMQRH 264 (405)
Q Consensus 258 ~~~~~~~ 264 (405)
|+++.+.
T Consensus 699 ~~~a~~~ 705 (886)
T KOG4507|consen 699 FRQALKL 705 (886)
T ss_pred HHHHHhc
Confidence 6665554
No 379
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=78.29 E-value=14 Score=24.33 Aligned_cols=55 Identities=11% Similarity=-0.011 Sum_probs=31.7
Q ss_pred HHhcCCHHHHHHHHhhcc----CCCcCc----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 315 LCKSGRLKIAWELFHSLP----RGVLIA----DVVTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 315 ~~~~~~~~~a~~~~~~~~----~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
..+.|++..|.+.+.+.. ..+..+ -....-.+.......|++++|...+++.++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 456778887766555443 222211 1122233445566778888888888887764
No 380
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=77.46 E-value=23 Score=25.21 Aligned_cols=23 Identities=4% Similarity=-0.116 Sum_probs=11.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHh
Q 035749 346 MIHALCADGKMDKAHDLFLDMEA 368 (405)
Q Consensus 346 l~~~~~~~g~~~~A~~~~~~~~~ 368 (405)
|..++.+.|+++.+.++.+.+.+
T Consensus 77 LAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444555555555555555554
No 381
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=77.39 E-value=6.7 Score=34.31 Aligned_cols=107 Identities=14% Similarity=0.018 Sum_probs=73.6
Q ss_pred HHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 035749 25 LINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRG 104 (405)
Q Consensus 25 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (405)
-+..+...++++.|+.++.++++.+ +..+..|..-..++.+.+++..|+.=+..+++.. |--...|..=..+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ld-------pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a 81 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELD-------PNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTA 81 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcC-------CcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHH
Confidence 3455667788999999999999875 3345555555678888899999888888887764 3334445445556
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHH
Q 035749 105 FCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELC 141 (405)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (405)
+...+.+.+|+..|+..... .|+.......+.-|-
T Consensus 82 ~m~l~~~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 82 VMALGEFKKALLDLEKVKKL--APNDPDATRKIDECN 116 (476)
T ss_pred HHhHHHHHHHHHHHHHhhhc--CcCcHHHHHHHHHHH
Confidence 66667777888777777653 666666666555543
No 382
>PRK10941 hypothetical protein; Provisional
Probab=77.18 E-value=39 Score=27.71 Aligned_cols=56 Identities=11% Similarity=-0.110 Sum_probs=29.0
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 035749 276 FIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLP 332 (405)
Q Consensus 276 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 332 (405)
+-.+|.+.++++.|+.+.+.+.... |.++.-+.--+-.|.+.|.+..|..-++...
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 3344555555555555555555543 3344444444555555555555555444443
No 383
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=76.78 E-value=12 Score=21.51 Aligned_cols=35 Identities=17% Similarity=0.135 Sum_probs=21.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 035749 345 IMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTL 381 (405)
Q Consensus 345 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 381 (405)
.+..++.+.|++++|.+..+.+++. .|+..-...|
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L 40 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHH
Confidence 3555677788888888888887773 6665544443
No 384
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.55 E-value=2.1 Score=35.44 Aligned_cols=97 Identities=14% Similarity=0.062 Sum_probs=75.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 035749 105 FCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRA 184 (405)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 184 (405)
....|.+++|++.|...+..+ ++....|..-.+++.+.+++..|++=+......+ +.+..-|-.-..+....|++++|
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein-~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN-PDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC-cccccccchhhHHHHHhhchHHH
Confidence 446788999999999998874 4477777788889999999999999999888774 22334455555666778999999
Q ss_pred HHHHHHHHhcCCCCChhhH
Q 035749 185 KELFVSMESMGCKHNVFSY 203 (405)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~ 203 (405)
...+....+.+..+....+
T Consensus 202 a~dl~~a~kld~dE~~~a~ 220 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANSAT 220 (377)
T ss_pred HHHHHHHHhccccHHHHHH
Confidence 9999999988765544433
No 385
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=76.41 E-value=6.1 Score=23.59 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=13.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHh
Q 035749 344 NIMIHALCADGKMDKAHDLFLDMEA 368 (405)
Q Consensus 344 ~~l~~~~~~~g~~~~A~~~~~~~~~ 368 (405)
-.++.++...|++++|.++++++.+
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3445555566666666665555543
No 386
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=76.32 E-value=24 Score=24.87 Aligned_cols=42 Identities=10% Similarity=0.101 Sum_probs=25.9
Q ss_pred HHHHHHHHH--HhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 035749 78 KAKELLLQM--KDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIE 120 (405)
Q Consensus 78 ~a~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 120 (405)
.+.++|..| ...| .-.+..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG-~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIG-TKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTS-TTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCcc-HHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 566666655 3444 33566677777777777777777777664
No 387
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=76.26 E-value=25 Score=28.45 Aligned_cols=55 Identities=7% Similarity=-0.035 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhccC----CC-cCccHHHHHHHHHHHHcCCCHHHHHHHH
Q 035749 309 SCLIDGLCKSGRLKIAWELFHSLPR----GV-LIADVVTYNIMIHALCADGKMDKAHDLF 363 (405)
Q Consensus 309 ~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 363 (405)
..++.-|...|++++|.++|+.+.. .| ..+...+...+..++...|+.+..+.+.
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3455555566666666666655421 11 1122333334444444555555444443
No 388
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=75.31 E-value=15 Score=21.94 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 035749 60 AVIYTTIIDGLCKEGFVDKAKELLLQMK 87 (405)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 87 (405)
-.-...+|.++...|++++|.+.++.+.
T Consensus 23 ~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 23 FLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3334445555666666666666555554
No 389
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=74.18 E-value=9.6 Score=31.29 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=30.3
Q ss_pred CCCChhH-HHHHHHHHHhcCchHHHHHHHHHHHcCC
Q 035749 15 CEPNVIT-YSTLINGLCRTGHTIVALNLFEEMINGN 49 (405)
Q Consensus 15 ~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 49 (405)
+.|+..+ |+..|+...+.||+++|+.+++++.+.|
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG 287 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLG 287 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3466655 5699999999999999999999999988
No 390
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=74.08 E-value=39 Score=31.35 Aligned_cols=76 Identities=24% Similarity=0.299 Sum_probs=54.2
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChH------HHHHHHHHHHhCCCCCChHH
Q 035749 24 TLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVD------KAKELLLQMKDKNINPDVVT 97 (405)
Q Consensus 24 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~ 97 (405)
++.++|..+|++-.+.++++.....+.. -+.-...++..++...+.|.++ .|.+++++.. +.-|..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~----~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t 105 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKG----DKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLT 105 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcC----CeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchH
Confidence 8999999999999999999998865421 1223567888899999999765 3444444444 3447777
Q ss_pred HHHHHHHHH
Q 035749 98 YNSVIRGFC 106 (405)
Q Consensus 98 ~~~l~~~~~ 106 (405)
|..++++-.
T Consensus 106 ~all~~~sl 114 (1117)
T COG5108 106 YALLCQASL 114 (1117)
T ss_pred HHHHHHhhc
Confidence 777766543
No 391
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=73.89 E-value=16 Score=32.19 Aligned_cols=106 Identities=11% Similarity=0.057 Sum_probs=73.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCC
Q 035749 66 IIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGK 145 (405)
Q Consensus 66 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 145 (405)
-+....+.+.++.|..++.++++.. +-++..|..-..++.+.+++..|+.=+..+++..+. ....|..-..++.+.+.
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ld-pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELD-PNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGE 87 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcC-CcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHH
Confidence 3445566788999999999999873 224455555568889999999999888888876422 34455555566677778
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 035749 146 MEEASQLLELMIQIGVRPNAFVYNTLMDGF 175 (405)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (405)
+.+|...|+..... .|+..-....+.-|
T Consensus 88 ~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 88 FKKALLDLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHhhhc--CcCcHHHHHHHHHH
Confidence 88888888877765 56655555554433
No 392
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.87 E-value=66 Score=28.73 Aligned_cols=367 Identities=10% Similarity=0.009 Sum_probs=189.7
Q ss_pred HhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCChHH---HHHHHHHH
Q 035749 30 CRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEG-FVDKAKELLLQMKDKNINPDVVT---YNSVIRGF 105 (405)
Q Consensus 30 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~ 105 (405)
....+++.|..-++++.......+......-.++..|...+.... .+..+..++.+.++..-...... ...|+..+
T Consensus 58 ~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~ 137 (629)
T KOG2300|consen 58 RYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLH 137 (629)
T ss_pred HHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHH
Confidence 346778888888888664432110001112346777778887766 78888888888876531111222 22356666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHH------HcCCC---HHHHHHHHHHHHHcCCCCCHH------HHHH
Q 035749 106 CYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDEL------CKNGK---MEEASQLLELMIQIGVRPNAF------VYNT 170 (405)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~---~~~a~~~~~~~~~~~~~~~~~------~~~~ 170 (405)
.-..++..|.+++.---.. -.+-...|..++..+ ....+ +..+......+.+.. .+|.. .|..
T Consensus 138 ~idkD~~sA~elLavga~s-Ad~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~-~sdk~~~E~LkvFyl 215 (629)
T KOG2300|consen 138 IIDKDFPSALELLAVGAES-ADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNI-SSDKTQKEMLKVFYL 215 (629)
T ss_pred hhhccchhHHHHHhccccc-cchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcc-CCChHHHHHHHHHHH
Confidence 7778888888874322111 111222333222221 22233 444455555555543 44432 2221
Q ss_pred H--HHHHHccCCHHHHHHHHHHHHhc---CC------------CCChhhHHH--------HH-----HHHhhcCChHHHH
Q 035749 171 L--MDGFCLTGRVNRAKELFVSMESM---GC------------KHNVFSYSI--------LI-----NGYCKNKEIEGAL 220 (405)
Q Consensus 171 l--~~~~~~~~~~~~a~~~~~~~~~~---~~------------~~~~~~~~~--------l~-----~~~~~~~~~~~a~ 220 (405)
. +.-|...|+...+...++++.+. +. .|.+..+.. |+ ..-...|-+++|.
T Consensus 216 ~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~ 295 (629)
T KOG2300|consen 216 VLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQ 295 (629)
T ss_pred HHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHH
Confidence 1 33456678888777777776542 11 111111111 11 1111234455666
Q ss_pred HHHHHHHhC-------C-CCCchhh-----HHHHHHHHHccccHHHHHHHHHHHHHcC-CCccH-------HHHHHHHH-
Q 035749 221 SLYSEMLSK-------G-IKPTVVT-----YNTLFIGLFEIHQVERAFKLFDEMQRHG-VAADT-------WAYRTFID- 278 (405)
Q Consensus 221 ~~~~~~~~~-------~-~~~~~~~-----~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~l~~- 278 (405)
++-++++.. . ..|-... ...++.+-.-.|++.+|++-...|.+-- -.|.+ ..+..++.
T Consensus 296 K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGl 375 (629)
T KOG2300|consen 296 KYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGL 375 (629)
T ss_pred HHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhh
Confidence 655554432 1 1111111 1122222335789999999998887531 12221 12223333
Q ss_pred HHhcCCChHHHHHHHHHHHhcCCCccHHHH--HHHHHHHHhcCCHHHHHHHHhhccCCCcCc-cH-----HHHHHHHHHH
Q 035749 279 GLCKNGYIVEALELFRTLRILKCELDIRSY--SCLIDGLCKSGRLKIAWELFHSLPRGVLIA-DV-----VTYNIMIHAL 350 (405)
Q Consensus 279 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~-----~~~~~l~~~~ 350 (405)
.+...+.++.|..-|..+.+.....|...+ ..++..|.+.|+-+.-.++++.+...+..+ .. ..+-.-.-..
T Consensus 376 ys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfa 455 (629)
T KOG2300|consen 376 YSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFA 455 (629)
T ss_pred HhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHH
Confidence 344668899999888887665434444333 345667889998888888887765332111 11 1121222223
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHccCchhHHHHHH
Q 035749 351 CADGKMDKAHDLFLDMEAKGVAPD-----CVAFNTLMLGCIRNNETSKVVELL 398 (405)
Q Consensus 351 ~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~ 398 (405)
...+++.+|...+++-.+..-.-| .-....|...+...|+..++.+.+
T Consensus 456 f~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmv 508 (629)
T KOG2300|consen 456 FKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMV 508 (629)
T ss_pred HHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhcc
Confidence 478999999999988776421111 112223345556677777766544
No 393
>PRK10941 hypothetical protein; Provisional
Probab=73.76 E-value=49 Score=27.16 Aligned_cols=61 Identities=11% Similarity=-0.023 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 63 YTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 63 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
.+.+-.++.+.++++.|+.+.+.+.... |.++.-+.--...|.+.|.+..|..-++..++.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 4455566677777777777777777653 445555665666677777777777777766654
No 394
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=73.13 E-value=9.1 Score=18.48 Aligned_cols=30 Identities=10% Similarity=0.142 Sum_probs=22.6
Q ss_pred CchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHH
Q 035749 33 GHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDG 69 (405)
Q Consensus 33 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 69 (405)
|+++.|..+|++++... +.+...|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~-------~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKF-------PKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHC-------CCChHHHHHHHHH
Confidence 56789999999998764 4567777776653
No 395
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=73.03 E-value=29 Score=25.25 Aligned_cols=61 Identities=16% Similarity=0.200 Sum_probs=31.5
Q ss_pred HHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCC
Q 035749 83 LLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNG 144 (405)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 144 (405)
.+.+++.|.+++.. -..++..+...++.-.|.++|+.+.+.++..+..|....+..+...|
T Consensus 9 ~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 9 IERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 34444555554332 33445555555555666666666666655554444444444444443
No 396
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=73.01 E-value=44 Score=26.30 Aligned_cols=49 Identities=16% Similarity=0.199 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHCCCCc-----cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 035749 112 NEAKRLFIEMMDQGVQP-----NVVTFSVIMDELCKNGKMEEASQLLELMIQIG 160 (405)
Q Consensus 112 ~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (405)
..|.+.|.+.......| .......+.....+.|+.++|.++|.++...+
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 45556666555432111 12223334445556677777777777666654
No 397
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.93 E-value=63 Score=28.08 Aligned_cols=62 Identities=6% Similarity=-0.015 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 035749 97 TYNSVIRGFCYANDSNEAKRLFIEMMDQ--GVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQ 158 (405)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 158 (405)
.+.-+...|...|+++.|++.|.+.... ..+-.+..|..++....-.|+|........+..+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 4455566666667777777766664432 1111233444555555555666655555555443
No 398
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=72.89 E-value=26 Score=25.51 Aligned_cols=64 Identities=16% Similarity=0.128 Sum_probs=46.9
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCC
Q 035749 5 ALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGF 75 (405)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 75 (405)
++.+.+.+.|.+++.. -..++..+.+.++.-.|.++++++.+.+ ++.+..|-...+..+...|-
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~------p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEG------PGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhC------CCCCHhHHHHHHHHHHHCCC
Confidence 4556677788887775 3568888888888899999999999987 34555565555666666553
No 399
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=72.65 E-value=24 Score=26.65 Aligned_cols=48 Identities=8% Similarity=0.058 Sum_probs=34.0
Q ss_pred ChHhHHHHHHhhcCCCCCh--hHH-----HHHHHHHHhcCchHHHHHHHHHHHcC
Q 035749 1 MEAAALFTKLKAFGCEPNV--ITY-----STLINGLCRTGHTIVALNLFEEMING 48 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~--~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~ 48 (405)
|.|+.+|+.+.+..-.|+. ..- ...+-.|.++|.+++|.+++++....
T Consensus 86 ESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d 140 (200)
T cd00280 86 ESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD 140 (200)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC
Confidence 4688999998876433311 111 23345688999999999999999873
No 400
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.33 E-value=65 Score=27.99 Aligned_cols=175 Identities=12% Similarity=0.065 Sum_probs=94.4
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc---------CCCCC
Q 035749 131 VTFSVIMDELCKNGKMEEASQLLELMIQIG--VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESM---------GCKHN 199 (405)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~ 199 (405)
..+..+...|...|+++.|++.|.+...-- .+-....+..+|....-.|+|.....+..+..+. .+++.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 456678888999999999999998865431 1223455666777777788888877777776654 12333
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHhCC------CCCchhhHHHHHHHHHccccHHHHHHH-----HHHHHHcCCCc
Q 035749 200 VFSYSILINGYCKNKEIEGALSLYSEMLSKG------IKPTVVTYNTLFIGLFEIHQVERAFKL-----FDEMQRHGVAA 268 (405)
Q Consensus 200 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~-----~~~~~~~~~~~ 268 (405)
..++..+.....+ ++..|.+.|-...... +.|...+....+.+.+--++-+--..+ |+...+ .
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~fle----l 304 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLE----L 304 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHh----c
Confidence 4445555544443 6666666654433211 223222222233333332322222122 222222 2
Q ss_pred cHHHHHHHHHHHhcCCChHHHHHHHHHHHhc-----CCCccHHHHHHHHH
Q 035749 269 DTWAYRTFIDGLCKNGYIVEALELFRTLRIL-----KCELDIRSYSCLID 313 (405)
Q Consensus 269 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~ 313 (405)
.+.....+...| .+++..++++++++... -+.|.+.++..+|+
T Consensus 305 ~Pqlr~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 305 EPQLREILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred ChHHHHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
Confidence 333444444433 36788888888887543 23345555554443
No 401
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=71.90 E-value=24 Score=22.81 Aligned_cols=66 Identities=11% Similarity=0.106 Sum_probs=44.1
Q ss_pred HhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHH
Q 035749 3 AAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAK 80 (405)
Q Consensus 3 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (405)
+-++++.+.+.|+ .+......+-.+-...|+.+.|.+++..+. ++ +..|...+.++...|.-.-|.
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----------~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QK----------EGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----------CcHHHHHHHHHHHcCchhhhh
Confidence 4567777787774 233333333333346689999999999997 54 346778888888877655543
No 402
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=71.83 E-value=71 Score=28.19 Aligned_cols=91 Identities=18% Similarity=0.196 Sum_probs=55.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 035749 308 YSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIR 387 (405)
Q Consensus 308 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 387 (405)
...|+.-|...|+..+|...++++--- +.....++.+++.+.-+.|+-...+.+++..-..|+- |-+.+-++|.+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglI----T~nQMtkGf~R 586 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLI----TTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCce----eHHHhhhhhhh
Confidence 355677788888888888887775432 2224566777777777888777777777777666533 33344444443
Q ss_pred cC--------chhHHHHHHHHhhh
Q 035749 388 NN--------ETSKVVELLHRMDE 403 (405)
Q Consensus 388 ~g--------~~~~a~~~~~~~~~ 403 (405)
-. +...|.+.|+...+
T Consensus 587 V~dsl~DlsLDvPna~ekf~~~Ve 610 (645)
T KOG0403|consen 587 VYDSLPDLSLDVPNAYEKFERYVE 610 (645)
T ss_pred hhccCcccccCCCcHHHHHHHHHH
Confidence 22 23445555555544
No 403
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=71.52 E-value=26 Score=23.05 Aligned_cols=59 Identities=14% Similarity=0.054 Sum_probs=35.0
Q ss_pred HHhcCchHHHHHHHHHHHcCCCCCcccccc----cHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 035749 29 LCRTGHTIVALNLFEEMINGNGEFGVVCKP----DAVIYTTIIDGLCKEGFVDKAKELLLQMKDK 89 (405)
Q Consensus 29 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (405)
..+.|++..|++.+.+......... .+. -......+.......|++++|.+.+++..+.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~--~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSN--NSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcc--cchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4578899988665555443221110 111 1233444566677788889888888887543
No 404
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=70.67 E-value=93 Score=29.07 Aligned_cols=26 Identities=15% Similarity=0.023 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHH
Q 035749 19 VITYSTLINGLCRTGHTIVALNLFEEM 45 (405)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~A~~~~~~~ 45 (405)
+..|. .+..+.-.|.++.|.+++...
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 56676 677888899999999998543
No 405
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=70.55 E-value=61 Score=26.91 Aligned_cols=83 Identities=16% Similarity=0.102 Sum_probs=38.6
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhh----c
Q 035749 142 KNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCL----TGRVNRAKELFVSMESMGCKHNVFSYSILINGYCK----N 213 (405)
Q Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 213 (405)
..+++..+...+......+. ......+...|.. ..+..+|..+++...+.| .+.....|...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGD---AAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcCC---hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcc
Confidence 44556666666666655331 1222233333222 234555666666554443 22223334444433 2
Q ss_pred CChHHHHHHHHHHHhCC
Q 035749 214 KEIEGALSLYSEMLSKG 230 (405)
Q Consensus 214 ~~~~~a~~~~~~~~~~~ 230 (405)
.+..+|..+|.++...|
T Consensus 127 ~d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 127 LDLVKALKYYEKAAKLG 143 (292)
T ss_pred cCHHHHHHHHHHHHHcC
Confidence 25555666666555554
No 406
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=70.44 E-value=17 Score=20.34 Aligned_cols=34 Identities=9% Similarity=0.126 Sum_probs=25.6
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 035749 350 LCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLML 383 (405)
Q Consensus 350 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 383 (405)
..+.|-.+++..++++|.+.|+..+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 4566777788888888888888888877776654
No 407
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=70.21 E-value=24 Score=27.16 Aligned_cols=43 Identities=16% Similarity=0.228 Sum_probs=28.8
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 80 KELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
.+..++..+. .|++.+|..++.++...|+.++|.++..++...
T Consensus 131 ~~~a~~~l~~--~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 131 IEWAERLLRR--RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHHHHHHh--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3444444544 567777777777777777777777777777654
No 408
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=70.01 E-value=46 Score=25.26 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=11.9
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 035749 68 DGLCKEGFVDKAKELLLQMKD 88 (405)
Q Consensus 68 ~~~~~~~~~~~a~~~~~~~~~ 88 (405)
..|.+.|.+++|.+++++...
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 345555666666666655554
No 409
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=69.62 E-value=70 Score=27.94 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=36.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCCCCChh--hHHHHHHHHh--hcCChHHHHHHHHHHHhC
Q 035749 172 MDGFCLTGRVNRAKELFVSMESMGCKHNVF--SYSILINGYC--KNKEIEGALSLYSEMLSK 229 (405)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 229 (405)
+..+...+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33455778888888888888775 344433 3444444443 355677888888776654
No 410
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=69.03 E-value=29 Score=22.66 Aligned_cols=63 Identities=16% Similarity=0.106 Sum_probs=38.7
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCCh
Q 035749 8 TKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFV 76 (405)
Q Consensus 8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 76 (405)
+.-...+ |.|...-..+...+...|+++.|++.+-.+++.+.. ..+...-..++..+.-.|.-
T Consensus 12 ~~~~a~~-P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~-----~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 12 EAALAAN-PDDLDARYALADALLAAGDYEEALDQLLELVRRDRD-----YEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT-----CCCCHHHHHHHHHHHHH-TT
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-----ccccHHHHHHHHHHHHcCCC
Confidence 3333333 556677788888999999999999999998887632 12344555555555555543
No 411
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=68.62 E-value=81 Score=27.58 Aligned_cols=57 Identities=12% Similarity=0.237 Sum_probs=38.9
Q ss_pred HHHHhhcCChHHHHHHHHHHHhCCCCCchh--hHHHHHHHHH--ccccHHHHHHHHHHHHHc
Q 035749 207 INGYCKNKEIEGALSLYSEMLSKGIKPTVV--TYNTLFIGLF--EIHQVERAFKLFDEMQRH 264 (405)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 264 (405)
+..+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455788999999999998886 454444 3444445444 456788888888877654
No 412
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=68.34 E-value=57 Score=25.69 Aligned_cols=64 Identities=13% Similarity=-0.004 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcCCHH-------HHHHHHhhccCCCcCc-----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 035749 307 SYSCLIDGLCKSGRLK-------IAWELFHSLPRGVLIA-----DVVTYNIMIHALCADGKMDKAHDLFLDMEAKG 370 (405)
Q Consensus 307 ~~~~l~~~~~~~~~~~-------~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 370 (405)
.+..+++.|...|+.+ .|.+.|.+..+....| .....-.++....+.|++++|.+.|.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 4455556666666633 3444554443322111 12333345566677888888888888887763
No 413
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=68.30 E-value=33 Score=22.94 Aligned_cols=10 Identities=30% Similarity=0.431 Sum_probs=3.8
Q ss_pred cCCCHHHHHH
Q 035749 142 KNGKMEEASQ 151 (405)
Q Consensus 142 ~~~~~~~a~~ 151 (405)
+.|++++|..
T Consensus 51 NrG~Yq~Al~ 60 (115)
T TIGR02508 51 NRGDYQSALQ 60 (115)
T ss_pred ccchHHHHHH
Confidence 3333333333
No 414
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=67.46 E-value=16 Score=30.10 Aligned_cols=42 Identities=24% Similarity=0.276 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 035749 340 VVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTL 381 (405)
Q Consensus 340 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 381 (405)
...|+..|....+.||+++|+.+++++.+.|+.--..+|...
T Consensus 257 e~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 257 ESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 344668888888888888888888888888877555555443
No 415
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=67.23 E-value=1.1e+02 Score=31.14 Aligned_cols=125 Identities=14% Similarity=0.016 Sum_probs=58.1
Q ss_pred HHHhcCChHHHHH------HHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH-------HCCCCccHhhHHH
Q 035749 69 GLCKEGFVDKAKE------LLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMM-------DQGVQPNVVTFSV 135 (405)
Q Consensus 69 ~~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~ 135 (405)
.....|.+.++.+ ++......-.+.....|..|...+-+.++.++|+..-.... .....-+...|..
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence 3444455555555 44422222123445566666666666777666665433321 1111122333444
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 035749 136 IMDELCKNGKMEEASQLLELMIQI-------GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMES 193 (405)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (405)
+...+...+....|...+.+.... ..|+...+++.+-..+...++++.|.++++.+.+
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 444444444555555555444332 1233333444444444444556666666655543
No 416
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=67.11 E-value=76 Score=26.70 Aligned_cols=134 Identities=14% Similarity=0.136 Sum_probs=70.5
Q ss_pred ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCccH
Q 035749 56 CKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK-NINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMD----QGVQPNV 130 (405)
Q Consensus 56 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~ 130 (405)
...|...++.+...-- .++++--+..+...+. |-.--...+......|++-|+.+.|++.+....+ .|.+.|+
T Consensus 66 i~~D~~~l~~m~~~ne--eki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKANE--EKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred eeccHHHHHHHHHhhH--HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 4556666666654321 2222222233333222 3222345666677778888888888877665543 4666666
Q ss_pred hhHHHHHHH-HHcCCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 035749 131 VTFSVIMDE-LCKNGKMEEASQLLELMIQIGVRPNA----FVYNTLMDGFCLTGRVNRAKELFVSMES 193 (405)
Q Consensus 131 ~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (405)
..+..-+.. |....-..+-++..+.+.+.|...+. .+|..+ -+....++.+|-.+|-....
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gl--y~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGL--YCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHH--HHHHHHhHHHHHHHHHHHcc
Confidence 655543333 33333345555555556666544432 233332 23345677888777776654
No 417
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=66.35 E-value=61 Score=30.23 Aligned_cols=24 Identities=13% Similarity=0.206 Sum_probs=0.0
Q ss_pred cccHHHHHHHHHHHHHcCCCccHH
Q 035749 248 IHQVERAFKLFDEMQRHGVAADTW 271 (405)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~ 271 (405)
.+++.+|.+.+-.+......|...
T Consensus 508 ~~~~~~Aa~~Lv~Ll~~~~~Pk~f 531 (566)
T PF07575_consen 508 EGDFREAASLLVSLLKSPIAPKSF 531 (566)
T ss_dssp ------------------------
T ss_pred hhhHHHHHHHHHHHHCCCCCcHHH
Confidence 355666666666655554444433
No 418
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=66.31 E-value=1.3e+02 Score=29.06 Aligned_cols=364 Identities=9% Similarity=-0.020 Sum_probs=176.5
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHH---hcCChHHHHHHHHHHHhCCCCCC
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLC---KEGFVDKAKELLLQMKDKNINPD 94 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~ 94 (405)
+...+..||..+.+.|++++....-..|.+. .|.++..|...+.... ..+...++..+|++....- .+
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~-------~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy--~~ 182 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEI-------APLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY--NS 182 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHh-------cCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc--cc
Confidence 4456788999999999998876666666655 3566677766655443 3467777888888776543 23
Q ss_pred hHHHHHHHHHHH-------hcCCHHHHHHHHHHHHHC-CCCc--cH---hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 035749 95 VVTYNSVIRGFC-------YANDSNEAKRLFIEMMDQ-GVQP--NV---VTFSVIMDELCKNGKMEEASQLLELMIQIGV 161 (405)
Q Consensus 95 ~~~~~~l~~~~~-------~~~~~~~a~~~~~~~~~~-~~~~--~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (405)
+..|.-.+..+. ..++++....+|.+.+.. |... .. ..|..+-..|...-..++...++..-+..+
T Consensus 183 v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~- 261 (881)
T KOG0128|consen 183 VPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP- 261 (881)
T ss_pred chHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-
Confidence 444444444333 335677777788777653 2111 11 222222233444444566666666655543
Q ss_pred CCCHHHHHHHHHHH-------HccCCHHHHHHH-------HHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHH
Q 035749 162 RPNAFVYNTLMDGF-------CLTGRVNRAKEL-------FVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEML 227 (405)
Q Consensus 162 ~~~~~~~~~l~~~~-------~~~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 227 (405)
.|..+-+.=..-. ....+++.+.+- +++..... ++-...|..++..+-..|++-....+++++.
T Consensus 262 -~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~-~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~ 339 (881)
T KOG0128|consen 262 -LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKE-PIKDQEWMSYIDFEKKSGDPVRIQLIEERAV 339 (881)
T ss_pred -chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 2222211111100 111223333332 22222221 3445567777888888888776666666654
Q ss_pred hCCC-CCch-------------------hhHH--------------HHHHHHHccccH-HHHHHHHHHHHHcCCCccHHH
Q 035749 228 SKGI-KPTV-------------------VTYN--------------TLFIGLFEIHQV-ERAFKLFDEMQRHGVAADTWA 272 (405)
Q Consensus 228 ~~~~-~~~~-------------------~~~~--------------~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~ 272 (405)
...+ .++. ..+. .-+.++.+.+.. ......|......++.. ...
T Consensus 340 ~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~l-~~~ 418 (881)
T KOG0128|consen 340 AEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVEL-HND 418 (881)
T ss_pred HhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHH-HHH
Confidence 3210 0000 0111 111111111110 00111111111110000 000
Q ss_pred HHHHHHHHhcC----------CChHHHHHHHHHHHhcCCCccHHHHHHHHHHH-HhcCCHHHHHHHHhhccCCCcCccHH
Q 035749 273 YRTFIDGLCKN----------GYIVEALELFRTLRILKCELDIRSYSCLIDGL-CKSGRLKIAWELFHSLPRGVLIADVV 341 (405)
Q Consensus 273 ~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~ 341 (405)
+......+... ..+..|...|.........+...+....+... .-+++.+.++.+|+.+...+.. +..
T Consensus 419 ~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~-~ia 497 (881)
T KOG0128|consen 419 YLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGG-SIA 497 (881)
T ss_pred HHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcc-hHH
Confidence 11111111111 12333444444443332233333333333333 3467899999999998876433 333
Q ss_pred -HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHccCchhHHH
Q 035749 342 -TYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCV--AFNTLMLGCIRNNETSKVV 395 (405)
Q Consensus 342 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~ 395 (405)
.|...+..-...|+...+..+++.+...-..|+.. .+..+.+.-...|.++...
T Consensus 498 g~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~ 554 (881)
T KOG0128|consen 498 GKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFD 554 (881)
T ss_pred HHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHh
Confidence 56666666667799999999888888764555422 2222333333445555443
No 419
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=66.22 E-value=88 Score=27.11 Aligned_cols=47 Identities=13% Similarity=0.112 Sum_probs=33.9
Q ss_pred HhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 035749 30 CRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMK 87 (405)
Q Consensus 30 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 87 (405)
...+|++.-..++.+ .|-..+++..+...+..+|+.+.|.+++++..
T Consensus 21 v~~~Dp~~l~~ll~~-----------~PyHidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 21 VQSHDPNALINLLQK-----------NPYHIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred HHccCHHHHHHHHHH-----------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344465555554422 36678889999999999999998888888764
No 420
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.86 E-value=67 Score=25.61 Aligned_cols=63 Identities=10% Similarity=0.064 Sum_probs=31.8
Q ss_pred HHHHHHcC-CCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 035749 136 IMDELCKN-GKMEEASQLLELMIQI--GVRPN---AFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKH 198 (405)
Q Consensus 136 l~~~~~~~-~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 198 (405)
+...|-.. .++++|+..|+..-+- |-..+ ...+..+.......+++.+|+++|+++.......
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33444333 4566666666655432 11111 1223333444456677778888887776654333
No 421
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=65.60 E-value=16 Score=18.34 Aligned_cols=26 Identities=12% Similarity=0.296 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 035749 355 KMDKAHDLFLDMEAKGVAPDCVAFNTLM 382 (405)
Q Consensus 355 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 382 (405)
.++.|..+|++.+.. .|+..+|....
T Consensus 2 E~dRAR~IyeR~v~~--hp~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLV--HPEVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHh--CCCchHHHHHH
Confidence 457777788777763 57777766544
No 422
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=65.37 E-value=36 Score=22.27 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=32.0
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-ChHHHHHHHHHHHhcCC
Q 035749 57 KPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINP-DVVTYNSVIRGFCYAND 110 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 110 (405)
|.|......+...+...|++++|++.+-.+.+..... +...-..++..+.-.|.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 5567777788888888888888888887777653222 33344445544444443
No 423
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.39 E-value=1.5e+02 Score=29.20 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 035749 62 IYTTIIDGLCKEGFVDKAKELLLQMKD 88 (405)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 88 (405)
-|..|+..|...|..++|+++|.+..+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 466777777777888888888777765
No 424
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=64.20 E-value=8.3 Score=27.20 Aligned_cols=32 Identities=28% Similarity=0.402 Sum_probs=23.1
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 035749 351 CADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLG 384 (405)
Q Consensus 351 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 384 (405)
...|.-.+|-.+|++|++.|-+||. |..|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 3456667788888899888888874 5566554
No 425
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=63.47 E-value=1.2e+02 Score=30.88 Aligned_cols=120 Identities=11% Similarity=0.031 Sum_probs=70.6
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCC-CcccccccHHHHHHHHHHHHhcCChHHHHHH
Q 035749 4 AALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGE-FGVVCKPDAVIYTTIIDGLCKEGFVDKAKEL 82 (405)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 82 (405)
+.++......-.++....|..+...+-+.|+.++|+..-.++.-.... .+...+.+...|..+.......++...|...
T Consensus 958 lnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~ 1037 (1236)
T KOG1839|consen 958 LNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKS 1037 (1236)
T ss_pred hhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhh
Confidence 335553333223455667888899999999999988876654322111 1111334455666666666666677777777
Q ss_pred HHHHHhC-------CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 035749 83 LLQMKDK-------NINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMD 123 (405)
Q Consensus 83 ~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (405)
+.+.+.. ..||...+++.+-..+...++++.|.+..+.+..
T Consensus 1038 ~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1038 LNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred HHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 6665432 1244444555555545555677777777776654
No 426
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=63.15 E-value=21 Score=21.57 Aligned_cols=51 Identities=8% Similarity=0.057 Sum_probs=41.2
Q ss_pred CCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhc
Q 035749 16 EPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKE 73 (405)
Q Consensus 16 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 73 (405)
.|....++.++...++..-.+.++..+.++.+.+ .-+..+|..-++.+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-------~I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-------SIDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-------SS-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHH
Confidence 4566678999999999999999999999999987 45678888888877765
No 427
>PRK12798 chemotaxis protein; Reviewed
Probab=62.56 E-value=1.1e+02 Score=26.89 Aligned_cols=82 Identities=13% Similarity=0.050 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HccCCHHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHhhcCChH
Q 035749 143 NGKMEEASQLLELMIQIGVRPNAFVYNTLMDGF-CLTGRVNRAKELFVSMESMGCKHNV----FSYSILINGYCKNKEIE 217 (405)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~ 217 (405)
.|+.+++.+.+..+.....++....+..|+.+. ....+..+|+++|+...-. .|-. .....-+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 455666666665555444445555555554432 3334556666666655433 1221 12222333444555555
Q ss_pred HHHHHHHHH
Q 035749 218 GALSLYSEM 226 (405)
Q Consensus 218 ~a~~~~~~~ 226 (405)
++..+-.+.
T Consensus 203 rf~~la~~Y 211 (421)
T PRK12798 203 KFEALARNY 211 (421)
T ss_pred HHHHHHHHH
Confidence 554444433
No 428
>PRK12798 chemotaxis protein; Reviewed
Probab=62.33 E-value=1.1e+02 Score=26.87 Aligned_cols=199 Identities=14% Similarity=0.094 Sum_probs=102.7
Q ss_pred HccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHh-hcCChHHHHHHHHHHHhC--CCCCchhhHHHHHHHHHccccHH
Q 035749 176 CLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYC-KNKEIEGALSLYSEMLSK--GIKPTVVTYNTLFIGLFEIHQVE 252 (405)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~ 252 (405)
+-.|+..++.+.+..+.....++....+-.|+.+-. ...++..|+++|+...-. |--........-+......|+.+
T Consensus 123 Y~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 123 YLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred HHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 456778888888877766655666666666665543 345778888888876553 11112233444445566777777
Q ss_pred HHHHHHHHHHHc-CCCcc-HHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 035749 253 RAFKLFDEMQRH-GVAAD-TWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHS 330 (405)
Q Consensus 253 ~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 330 (405)
++..+-.....+ ...|- ......+...+.+.++-..-..+...+......--...|..+.+.-...|+.+-|.-.-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 776665555443 11122 1222333334444433222222222222222122345677777777778887777666665
Q ss_pred ccCCCcCc---cH--HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH
Q 035749 331 LPRGVLIA---DV--VTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCV 376 (405)
Q Consensus 331 ~~~~~~~~---~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 376 (405)
........ .. ..|... +-.-..+++++.+.+..+-...+.+...
T Consensus 283 A~~L~~~~~~~~~ra~LY~aa--a~v~s~~~~~al~~L~~I~~~~L~~~Dr 331 (421)
T PRK12798 283 ALKLADPDSADAARARLYRGA--ALVASDDAESALEELSQIDRDKLSERDR 331 (421)
T ss_pred HHHhccCCCcchHHHHHHHHH--HccCcccHHHHHHHHhcCChhhCChhhH
Confidence 54321111 11 111111 1223445666666666665554554433
No 429
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=61.93 E-value=32 Score=20.56 Aligned_cols=50 Identities=22% Similarity=0.289 Sum_probs=35.2
Q ss_pred HHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHH-----hcCChHHHHHHH
Q 035749 28 GLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLC-----KEGFVDKAKELL 83 (405)
Q Consensus 28 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~a~~~~ 83 (405)
.+...|++-+|-++++.+-... .++....+..+|+... +.|+...|..++
T Consensus 8 ~l~n~g~f~EaHEvlE~~W~~~------~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 8 ELFNAGDFFEAHEVLEELWKAA------PGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHTT-HHHHHHHHHHHCCCT-------CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHHcCCCHHHhHHHHHHHHHHC------CcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 3567999999999999998754 3456667777776544 567777776654
No 430
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=60.77 E-value=58 Score=23.21 Aligned_cols=32 Identities=16% Similarity=0.120 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 035749 61 VIYTTIIDGLCKEGFVDKAKELLLQMKDKNIN 92 (405)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 92 (405)
.++..++.-+...|+++.|+++.+.+++.|.+
T Consensus 49 ~Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 49 DVLMTVMVWLFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred chHHhhHhhhhcccCHHHHHHHHHHHHHcCCC
Confidence 45556666677778888888888777777643
No 431
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=60.62 E-value=29 Score=20.98 Aligned_cols=50 Identities=8% Similarity=0.151 Sum_probs=33.7
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHh
Q 035749 57 KPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCY 107 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 107 (405)
.|....++.++...++..-.++++..+.+..+.| ..+..+|..-++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4556677777777777777888888888887776 3566666666655544
No 432
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=60.45 E-value=97 Score=25.64 Aligned_cols=61 Identities=10% Similarity=0.086 Sum_probs=26.8
Q ss_pred ccHHHHHHHHHHHhcCCChHHHHHHHHHHHhc-CCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 035749 268 ADTWAYRTFIDGLCKNGYIVEALELFRTLRIL-KCELDIRSYSCLIDGLCKSGRLKIAWELF 328 (405)
Q Consensus 268 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 328 (405)
++..+...++..++..+++.+-.+++...... +...|...|..++......|+..-...+.
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 34444444444444444444444444443332 22334444444444444444444444433
No 433
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=59.99 E-value=89 Score=26.47 Aligned_cols=59 Identities=19% Similarity=0.033 Sum_probs=33.3
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhc---CCCccHHHH--HHHHHHHHhcCCHHHHHHHHhhccC
Q 035749 275 TFIDGLCKNGYIVEALELFRTLRIL---KCELDIRSY--SCLIDGLCKSGRLKIAWELFHSLPR 333 (405)
Q Consensus 275 ~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~ 333 (405)
.++....+.++.++|+++++++.+. .-.|+...+ ...++++...|+..++.+.+.+...
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3344444556777777777776543 123444333 3445556667777777777665543
No 434
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=59.56 E-value=1e+02 Score=25.69 Aligned_cols=232 Identities=12% Similarity=0.117 Sum_probs=0.0
Q ss_pred CCccHhhHHHHHH--HHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhH
Q 035749 126 VQPNVVTFSVIMD--ELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSY 203 (405)
Q Consensus 126 ~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 203 (405)
+.|....++.+++ .|...+--++..+++..+. ++.++...-.+++.+..-.+ |.+|....-
T Consensus 107 i~~~~qvf~KliRRykyLeK~fE~e~~k~Llflk--~F~e~Er~KLA~~Tal~l~n---------------Gt~~~tvl~ 169 (412)
T KOG2297|consen 107 IRNSVQVFQKLIRRYKYLEKNFENEMRKFLLFLK--LFEENERKKLAMLTALLLSN---------------GTLPATVLQ 169 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHHHhC---------------CCCCHHHHH
Q ss_pred HHHHHHHhhcC-ChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhc
Q 035749 204 SILINGYCKNK-EIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCK 282 (405)
Q Consensus 204 ~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 282 (405)
..+-..+.+.| -..-|.++|...+... ..+.++.++.+.+--+..+++| ||+..+...+...+..
T Consensus 170 ~L~~d~LVkeGi~l~F~~~lFk~~~~Ek------~i~~lis~Lrkg~md~rLmeff--------Ppnkrs~E~Fak~Ft~ 235 (412)
T KOG2297|consen 170 SLLNDNLVKEGIALSFAVKLFKEWLVEK------DINDLISSLRKGKMDDRLMEFF--------PPNKRSVEHFAKYFTD 235 (412)
T ss_pred HHHHhhHHHHhHHHHHHHHHHHHHHhhc------cHHHHHHHHHhcChHhHHHHhc--------CCcchhHHHHHHHHhH
Q ss_pred CCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHH
Q 035749 283 NGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDL 362 (405)
Q Consensus 283 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 362 (405)
.|--+...-.-.++.. ..-...-..+..-..+...+++.....++-.+.+-.|+..+...+-.+.+....|.+-.++
T Consensus 236 agL~elvey~~~q~~~---~a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeel 312 (412)
T KOG2297|consen 236 AGLKELVEYHRNQQSE---GARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEEL 312 (412)
T ss_pred hhHHHHHHHHHHHHHH---HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHH
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCchhHHH
Q 035749 363 FLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVV 395 (405)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 395 (405)
..+-.-+ ...+|..|+.+++.+|+.+-.+
T Consensus 313 va~qalr----hlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 313 VAEQALR----HLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHHHHHH----HHHhhhHHHHHHhcCChHHHHH
No 435
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=59.19 E-value=64 Score=23.14 Aligned_cols=68 Identities=3% Similarity=0.061 Sum_probs=43.1
Q ss_pred CCChHHHHHHHHHHHhcCC---HHHHHHHHHHHHH-CCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 92 NPDVVTYNSVIRGFCYAND---SNEAKRLFIEMMD-QGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
.++..+--.+..++.+..+ ..+.+.+++.+.+ ..+.........+.-++.+.++++++.++++.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 4555666666677766554 4566677777775 222223344445566777888888888888877765
No 436
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=58.78 E-value=90 Score=24.72 Aligned_cols=102 Identities=19% Similarity=0.151 Sum_probs=49.7
Q ss_pred CccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCC-CccHHHH--HHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHH
Q 035749 267 AADTWAYRTFIDGLCKNGYIVEALELFRTLRILKC-ELDIRSY--SCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTY 343 (405)
Q Consensus 267 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 343 (405)
.+...-++.++.-|.-...+.+|-+.|..-..... ..+...+ ..-++.....|+.++|.+....+...-+..|...+
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~ 102 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELF 102 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHH
Confidence 34444455555544444445555554443322211 1233332 33455567777777777777766543333343222
Q ss_pred HHHHH----HHHcCCCHHHHHHHHHHHHh
Q 035749 344 NIMIH----ALCADGKMDKAHDLFLDMEA 368 (405)
Q Consensus 344 ~~l~~----~~~~~g~~~~A~~~~~~~~~ 368 (405)
-.|.. =..+.|..++|+++.+.=..
T Consensus 103 F~Lq~q~lIEliR~~~~eeal~F~q~~LA 131 (228)
T KOG2659|consen 103 FHLQQLHLIELIREGKTEEALEFAQTKLA 131 (228)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Confidence 22221 13466667777766655443
No 437
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=58.24 E-value=70 Score=23.27 Aligned_cols=84 Identities=14% Similarity=0.124 Sum_probs=36.6
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCChHHHHH
Q 035749 22 YSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGF-VDKAKELLLQMKDKNINPDVVTYNS 100 (405)
Q Consensus 22 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (405)
.+.++.-....+++.-.+.+++.+....+..-. ...+...|..++....+... ---+..+|..+++.+.++++.-|..
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~-~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNII-GWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHh-hhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 344555555555555555555554322110000 01223345555555443333 2234445555554444555555555
Q ss_pred HHHHHH
Q 035749 101 VIRGFC 106 (405)
Q Consensus 101 l~~~~~ 106 (405)
++.++.
T Consensus 121 li~~~l 126 (145)
T PF13762_consen 121 LIKAAL 126 (145)
T ss_pred HHHHHH
Confidence 555443
No 438
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.54 E-value=23 Score=33.90 Aligned_cols=100 Identities=15% Similarity=0.183 Sum_probs=51.7
Q ss_pred HhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHH
Q 035749 280 LCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKA 359 (405)
Q Consensus 280 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 359 (405)
+...|+.+.|++.-.+ -.+..+|..|+......|+.+-|...|++... |+.|-..|.-.|+.++-
T Consensus 653 aLe~gnle~ale~akk------ldd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL 717 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKK------LDDKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKL 717 (1202)
T ss_pred ehhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHH
Confidence 3445666665544332 13555666777776777777666666665443 33344445556666665
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHH
Q 035749 360 HDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHR 400 (405)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 400 (405)
.++.+.+..+ .|... ....-.-.|+.++-.++++.
T Consensus 718 ~Km~~iae~r---~D~~~---~~qnalYl~dv~ervkIl~n 752 (1202)
T KOG0292|consen 718 SKMMKIAEIR---NDATG---QFQNALYLGDVKERVKILEN 752 (1202)
T ss_pred HHHHHHHHhh---hhhHH---HHHHHHHhccHHHHHHHHHh
Confidence 5555544432 12211 11112224666666666554
No 439
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=57.23 E-value=33 Score=19.16 Aligned_cols=31 Identities=13% Similarity=0.332 Sum_probs=16.2
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChHHHHHHH
Q 035749 72 KEGFVDKAKELLLQMKDKNINPDVVTYNSVI 102 (405)
Q Consensus 72 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 102 (405)
+.|-..++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555555555555555555555544443
No 440
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=55.80 E-value=19 Score=25.50 Aligned_cols=21 Identities=24% Similarity=0.585 Sum_probs=12.0
Q ss_pred CCHHHHHHHHHHHHHCCCCcc
Q 035749 109 NDSNEAKRLFIEMMDQGVQPN 129 (405)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~ 129 (405)
|.-.+|-.+|.+|++.|-+||
T Consensus 109 gsk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc
Confidence 444455566666666665554
No 441
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.53 E-value=2.2e+02 Score=28.20 Aligned_cols=119 Identities=14% Similarity=0.161 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCCh--HHHHHHHHHHHhCCCCCChHHH
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFV--DKAKELLLQMKDKNINPDVVTY 98 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~ 98 (405)
-|..|+..|...|+.++|+++|.+........ -+.-..-+..+++.+.+.+.. +-.++.-+...+.+.......+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~---d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~If 582 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDT---DSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIF 582 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcccccc---ccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeee
Confidence 47899999999999999999999998743100 011223344456555555554 5555555554443211111111
Q ss_pred H------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHc
Q 035749 99 N------------SVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCK 142 (405)
Q Consensus 99 ~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (405)
. .-+..|+.....+-+...++.+....-.++....+.++..|..
T Consensus 583 t~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 583 TSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred eccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1 1223355666677777888888766555566666777766653
No 442
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=55.20 E-value=1.4e+02 Score=28.13 Aligned_cols=91 Identities=18% Similarity=0.254 Sum_probs=57.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHccCCHH------HHHHHHHHHHhcCCCCChhhHHHH
Q 035749 135 VIMDELCKNGKMEEASQLLELMIQIG--VRPNAFVYNTLMDGFCLTGRVN------RAKELFVSMESMGCKHNVFSYSIL 206 (405)
Q Consensus 135 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 206 (405)
.++.+|...|++..+.++++.+...+ -+.-...++..++...+.|.++ .+.+.++... +.-|..+|..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78889999999999999998887653 2233456777788888888754 3333333333 34577788887
Q ss_pred HHHHhhcCChHHHHHHHHHHHh
Q 035749 207 INGYCKNKEIEGALSLYSEMLS 228 (405)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~~ 228 (405)
+++-..--...-..-++.+.+.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 7766553333333334444443
No 443
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=54.87 E-value=1.3e+02 Score=25.49 Aligned_cols=92 Identities=15% Similarity=0.055 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHH
Q 035749 63 YTTIIDGLCKEGFVDKAKELLLQMKDKNI---NPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDE 139 (405)
Q Consensus 63 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (405)
|.-=..-|.+..++..|...|.+-++... ..+...|+.-..+-...|++..|+.-....+...+. ....|..-..+
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~-h~Ka~~R~Akc 162 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT-HLKAYIRGAKC 162 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc-hhhhhhhhhHH
Confidence 33334445555555555555555443321 112344444444444455555555554444443222 22233333333
Q ss_pred HHcCCCHHHHHHHHHH
Q 035749 140 LCKNGKMEEASQLLEL 155 (405)
Q Consensus 140 ~~~~~~~~~a~~~~~~ 155 (405)
+.....+..|..+.+.
T Consensus 163 ~~eLe~~~~a~nw~ee 178 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4444444444444443
No 444
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=54.87 E-value=1.1e+02 Score=24.64 Aligned_cols=60 Identities=12% Similarity=0.039 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 99 NSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
....+++...|++-++++...+.+... +-+..+|..-..+.+..=+..+|..-|...++.
T Consensus 234 lNy~QC~L~~~e~yevleh~seiL~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 234 LNYCQCLLKKEEYYEVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HhHHHHHhhHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 334445555566666666555555542 225555555555555555556666655555554
No 445
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=54.38 E-value=40 Score=26.67 Aligned_cols=56 Identities=16% Similarity=0.112 Sum_probs=43.1
Q ss_pred HHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 035749 28 GLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKN 90 (405)
Q Consensus 28 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 90 (405)
...+.++.+.|.+++.++++.- +.....|..+...-.+.|+++.|.+.|++..+..
T Consensus 4 ~~~~~~D~~aaaely~qal~la-------p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELA-------PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcC-------chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 3456778888888888888753 5567778888888888888888888888887764
No 446
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=53.54 E-value=77 Score=22.36 Aligned_cols=43 Identities=16% Similarity=0.379 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHCCCCc-cHhhHHHHHHHHHcCCCHHHHHHHHHH
Q 035749 113 EAKRLFIEMMDQGVQP-NVVTFSVIMDELCKNGKMEEASQLLEL 155 (405)
Q Consensus 113 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 155 (405)
.+.++|..|...|+-. -+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 5666666666554332 234455555556666666666666654
No 447
>PHA02875 ankyrin repeat protein; Provisional
Probab=53.45 E-value=1.6e+02 Score=26.02 Aligned_cols=34 Identities=15% Similarity=0.096 Sum_probs=19.7
Q ss_pred HHHHHHhhcCCCCChhH--HHHHHHHHHhcCchHHH
Q 035749 5 ALFTKLKAFGCEPNVIT--YSTLINGLCRTGHTIVA 38 (405)
Q Consensus 5 ~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A 38 (405)
++++.+.+.|..|+... -.+.+...+..|+.+-+
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v 51 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAI 51 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHH
Confidence 45667777777665532 23445555666776543
No 448
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.13 E-value=2.2e+02 Score=27.46 Aligned_cols=75 Identities=15% Similarity=0.101 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHH
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYN 99 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 99 (405)
..+..+|..+...|++++|-...-.|.. .+...|..-+..+...++......+ +.......++..|.
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~g----------n~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYe 459 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLG----------NNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYE 459 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhc----------chHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHH
Confidence 4677888889999999999998888854 4566777777777776665543333 33222223567787
Q ss_pred HHHHHHHh
Q 035749 100 SVIRGFCY 107 (405)
Q Consensus 100 ~l~~~~~~ 107 (405)
.++..+..
T Consensus 460 mvLve~L~ 467 (846)
T KOG2066|consen 460 MVLVEFLA 467 (846)
T ss_pred HHHHHHHH
Confidence 77777765
No 449
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=52.89 E-value=54 Score=22.39 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=15.1
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHh
Q 035749 203 YSILINGYCKNKEIEGALSLYSEMLS 228 (405)
Q Consensus 203 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (405)
|..|+..|...|.+++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 45555556666666666666655554
No 450
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=52.60 E-value=72 Score=21.77 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=22.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 035749 342 TYNIMIHALCADGKMDKAHDLFLDMEA 368 (405)
Q Consensus 342 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 368 (405)
-|..|+..|...|..++|.+++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 377888888888888888888888876
No 451
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=51.15 E-value=59 Score=27.11 Aligned_cols=68 Identities=10% Similarity=0.066 Sum_probs=35.5
Q ss_pred CCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHH-HHHHHHhcCChHHHHHHHHHHHhCC
Q 035749 16 EPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTT-IIDGLCKEGFVDKAKELLLQMKDKN 90 (405)
Q Consensus 16 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~ 90 (405)
+.|+..|...+....+.|.+.+.-.+|.++++.+ |.+++.|.. -..-+...++++.+..+|.+..+-+
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-------P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N 172 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-------PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN 172 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCCceeeeeeccchhhhhccHHHHHHHHHhhhccC
Confidence 3455556655555555566666666666666554 344444432 1222334455666666666555443
No 452
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=50.82 E-value=1.7e+02 Score=25.46 Aligned_cols=142 Identities=11% Similarity=0.092 Sum_probs=74.4
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHH---HcCCC
Q 035749 69 GLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDEL---CKNGK 145 (405)
Q Consensus 69 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~ 145 (405)
.+...++++.-..+++ + .|-.+.++..+...+...|+...|.+++++.+-. -..++......+ ...|.
T Consensus 19 ~~v~~~Dp~~l~~ll~---~--~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~----~e~~~~~~F~~~~~~~~~g~ 89 (360)
T PF04910_consen 19 AAVQSHDPNALINLLQ---K--NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFA----FERAFHPSFSPFRSNLTSGN 89 (360)
T ss_pred HHHHccCHHHHHHHHH---H--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----HHHHHHHHhhhhhcccccCc
Confidence 3344455555555442 2 2456777777777788888887777777766421 000111111000 00000
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHh-hcCChHHHHH
Q 035749 146 MEEASQLLELMIQIGVRPNAFVYNT---LMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYC-KNKEIEGALS 221 (405)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~ 221 (405)
. -..-....|...|.. .+..+.+.|.+..|.++.+-+...+...|+.....+|..|+ +.++++-.++
T Consensus 90 ~---------rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~ 160 (360)
T PF04910_consen 90 C---------RLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLID 160 (360)
T ss_pred c---------ccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHH
Confidence 0 000001123333333 34566777888888888888777764446666666665553 5666776677
Q ss_pred HHHHHHh
Q 035749 222 LYSEMLS 228 (405)
Q Consensus 222 ~~~~~~~ 228 (405)
+.+....
T Consensus 161 ~~~~~~~ 167 (360)
T PF04910_consen 161 FSESPLA 167 (360)
T ss_pred HHHhHhh
Confidence 6666544
No 453
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=50.20 E-value=1.5e+02 Score=24.64 Aligned_cols=98 Identities=13% Similarity=0.137 Sum_probs=46.0
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCccHhhHHH-HHHHHHcCCCHHHHHHHHHHHHHcCCCCCH---
Q 035749 94 DVVTYNSVIRGFCYANDSNEAKRLFIEMMD----QGVQPNVVTFSV-IMDELCKNGKMEEASQLLELMIQIGVRPNA--- 165 (405)
Q Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 165 (405)
-..++..+...|++.++.+.+.++..+..+ .|.+.|...... +.-.|....-.++.++..+.+.+.|...+.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 445566666666666666666655554433 234333322211 222233333355556666666666543322
Q ss_pred -HHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 035749 166 -FVYNTLMDGFCLTGRVNRAKELFVSMES 193 (405)
Q Consensus 166 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (405)
.+|.-+ .+....++.+|-.++.....
T Consensus 194 yK~Y~Gi--~~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 194 YKVYKGI--FKMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHH--HHHHHHhhHHHHHHHHHHhc
Confidence 122221 12233456666666655543
No 454
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=49.95 E-value=93 Score=22.23 Aligned_cols=30 Identities=13% Similarity=0.118 Sum_probs=18.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 035749 98 YNSVIRGFCYANDSNEAKRLFIEMMDQGVQ 127 (405)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 127 (405)
+..++-.+...|+++.|+++.+.+++.|.+
T Consensus 51 l~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 51 LMTVMVWLFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred HHhhHhhhhcccCHHHHHHHHHHHHHcCCC
Confidence 334444466777777777777777766643
No 455
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=49.79 E-value=49 Score=19.01 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=10.2
Q ss_pred HHHHcCCCHHHHHHHHHHHHHc
Q 035749 138 DELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
-++.+.|++++|.+..+.+++.
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhh
Confidence 3444455555555555554444
No 456
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=49.10 E-value=93 Score=23.39 Aligned_cols=63 Identities=13% Similarity=0.102 Sum_probs=44.0
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChH
Q 035749 8 TKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVD 77 (405)
Q Consensus 8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 77 (405)
+.+.+.|.+.+..- ..++..+...++.-.|.++++.+.+.+ ...+..|....+..+.+.|-..
T Consensus 15 ~~L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~------~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 15 KLCAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAE------PQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhC------CCCCcchHHHHHHHHHHCCCEE
Confidence 33556677766654 356666666777889999999999887 4556666666677777776544
No 457
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.06 E-value=3.2e+02 Score=27.97 Aligned_cols=127 Identities=13% Similarity=0.075 Sum_probs=79.4
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHH
Q 035749 22 YSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSV 101 (405)
Q Consensus 22 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 101 (405)
|...++.+-+.+-.+.+.++-..+++.-+.- .|.-+.+++.+.......|.+.+|...+-+-... ..-..+...+
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd---~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRql 1060 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDD---NPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQL 1060 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCc---chhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHH
Confidence 6677888888999999999988888764211 1223456778888888888888887765443221 1123445566
Q ss_pred HHHHHhcCCHH------------HHHH-HHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHH
Q 035749 102 IRGFCYANDSN------------EAKR-LFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLL 153 (405)
Q Consensus 102 ~~~~~~~~~~~------------~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 153 (405)
+..+..+|.++ +... +++..-+..+......|..|-..+...+++.+|-.+.
T Consensus 1061 vivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1061 VIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 66677777654 3333 3333333323334455666666677888888877654
No 458
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=47.89 E-value=1.8e+02 Score=24.84 Aligned_cols=98 Identities=14% Similarity=0.003 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHH
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNS 100 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (405)
.|.-=..-|.+..++..|+..|.+.++..-.- ...+...|+.-..+-...|++..|+.-....+... |.....|-.
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D---~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~-P~h~Ka~~R 158 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCAD---PDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK-PTHLKAYIR 158 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCC---ccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhhhh
Confidence 34455667888899999999999988764210 23356678777777778899999999888888764 334555656
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 035749 101 VIRGFCYANDSNEAKRLFIEMM 122 (405)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~ 122 (405)
-..++....++.+|..+.++..
T Consensus 159 ~Akc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhhh
Confidence 6667777788888888777664
No 459
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.81 E-value=3.3e+02 Score=27.94 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=16.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHh
Q 035749 345 IMIHALCADGKMDKAHDLFLDMEA 368 (405)
Q Consensus 345 ~l~~~~~~~g~~~~A~~~~~~~~~ 368 (405)
.+++.|..-+++.+|..++-+.++
T Consensus 1375 ellrllVdy~rl~eA~dLlsEive 1398 (1480)
T KOG4521|consen 1375 ELLRLLVDYERLSEALDLLSEIVE 1398 (1480)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHH
Confidence 466667777777777776666554
No 460
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.31 E-value=1.5e+02 Score=23.83 Aligned_cols=25 Identities=12% Similarity=0.295 Sum_probs=15.2
Q ss_pred HHHHHHccccHHHHHHHHHHHHHcC
Q 035749 241 LFIGLFEIHQVERAFKLFDEMQRHG 265 (405)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~ 265 (405)
+...-...+++.+|+.+|+++....
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334445667777777777766543
No 461
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.00 E-value=85 Score=20.97 Aligned_cols=23 Identities=17% Similarity=0.102 Sum_probs=10.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHH
Q 035749 169 NTLMDGFCLTGRVNRAKELFVSM 191 (405)
Q Consensus 169 ~~l~~~~~~~~~~~~a~~~~~~~ 191 (405)
..|.-.|.+.|+.+.+.+-|+.-
T Consensus 76 AhLGlLys~~G~~e~a~~eFetE 98 (121)
T COG4259 76 AHLGLLYSNSGKDEQAVREFETE 98 (121)
T ss_pred HHHHHHHhhcCChHHHHHHHHHh
Confidence 33444445555555555544443
No 462
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=46.16 E-value=43 Score=17.30 Aligned_cols=18 Identities=22% Similarity=0.277 Sum_probs=10.0
Q ss_pred HHHHHHHcCCCHHHHHHH
Q 035749 345 IMIHALCADGKMDKAHDL 362 (405)
Q Consensus 345 ~l~~~~~~~g~~~~A~~~ 362 (405)
.+.-.+-..|++++|+++
T Consensus 6 ~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 344455566666666666
No 463
>PRK09462 fur ferric uptake regulator; Provisional
Probab=45.76 E-value=1.2e+02 Score=22.17 Aligned_cols=35 Identities=17% Similarity=0.364 Sum_probs=17.4
Q ss_pred CHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCC
Q 035749 110 DSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNG 144 (405)
Q Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 144 (405)
..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34455556666555554444444444444444444
No 464
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=45.72 E-value=1.9e+02 Score=24.55 Aligned_cols=59 Identities=10% Similarity=0.160 Sum_probs=35.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 035749 135 VIMDELCKNGKMEEASQLLELMIQIGVRPNA---FVYNTLMDGFCLTGRVNRAKELFVSMESMG 195 (405)
Q Consensus 135 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 195 (405)
.+..+..+.|+..+|.+.++.+.+.- |-. .+...++.++....-+.+...++.+..+..
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~--pl~t~lniheNLiEalLE~QAYADvqavLakYDdis 341 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEF--PLLTMLNIHENLLEALLELQAYADVQAVLAKYDDIS 341 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 34445556788888888887766542 211 223456666666666666666666655544
No 465
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.62 E-value=2.5e+02 Score=26.02 Aligned_cols=52 Identities=15% Similarity=0.033 Sum_probs=23.3
Q ss_pred HHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHH-cCCCHHHHHHHHHHH
Q 035749 315 LCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALC-ADGKMDKAHDLFLDM 366 (405)
Q Consensus 315 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 366 (405)
..+.|-+..|.++.+-+......-|+.....+|..|+ +..+|+-.+++++..
T Consensus 352 l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 352 LAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3344555555555555444322223333444444333 444455555544444
No 466
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=45.44 E-value=1.8e+02 Score=24.30 Aligned_cols=152 Identities=11% Similarity=0.069 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHH
Q 035749 62 IYTTIIDGLCKEGFVDKAKELLLQMKDK--NINPD-VVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMD 138 (405)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (405)
.+..+-..-.-..+...+......+++. ...-+ ...-..++....+.++..+..+.+..+. ....-...+.
T Consensus 62 f~~a~~~v~el~~~l~~a~~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~ 135 (291)
T PF10475_consen 62 FFQAMSSVQELQDELEEALVICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQ 135 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
Confidence 3344433333344555555555554432 00001 1123345555666666666666666664 3333445667
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-----CCCCChhhHHHHHHHHhhc
Q 035749 139 ELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESM-----GCKHNVFSYSILINGYCKN 213 (405)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~ 213 (405)
.+...|++..|++++....+.- . ...-+..+-..- .++++.....+.+.+. -..-|+..|..+..+|.-.
T Consensus 136 ~ll~~~dy~~Al~li~~~~~~l-~-~l~~~~c~~~L~---~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lL 210 (291)
T PF10475_consen 136 ELLEEGDYPGALDLIEECQQLL-E-ELKGYSCVRHLS---SQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLL 210 (291)
T ss_pred HHHhcCCHHHHHHHHHHHHHHH-H-hcccchHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 7778899999999888776541 0 111111111111 1122222222222211 1146888999999999998
Q ss_pred CChHHHHHHHH
Q 035749 214 KEIEGALSLYS 224 (405)
Q Consensus 214 ~~~~~a~~~~~ 224 (405)
|+...+.+-+.
T Consensus 211 gk~~~~~dkl~ 221 (291)
T PF10475_consen 211 GKTQSAMDKLQ 221 (291)
T ss_pred hhhHHHHHHHH
Confidence 88766654433
No 467
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.04 E-value=93 Score=20.81 Aligned_cols=54 Identities=9% Similarity=-0.057 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHH
Q 035749 184 AKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYN 239 (405)
Q Consensus 184 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (405)
..+.++++...+....+-....|.-.|.+.|+.+.|.+-|+.-... -|...+|-
T Consensus 56 le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKal--FPES~~fm 109 (121)
T COG4259 56 LEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKAL--FPESGVFM 109 (121)
T ss_pred HHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhh--CccchhHH
Confidence 3444555544443333344445555666667776666666654432 34444443
No 468
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=44.66 E-value=1.2e+02 Score=22.08 Aligned_cols=48 Identities=13% Similarity=0.199 Sum_probs=22.9
Q ss_pred HhhHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 035749 130 VVTFSVIMDELCKNGK-MEEASQLLELMIQIGVRPNAFVYNTLMDGFCL 177 (405)
Q Consensus 130 ~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (405)
...|..++.+..+..- ---+..+|..+.+.+.+.+..-|..++.++.+
T Consensus 79 ~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 79 NSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred cchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 3445555555444333 23344445555544455555555555554443
No 469
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=44.39 E-value=49 Score=17.42 Aligned_cols=26 Identities=12% Similarity=0.013 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 035749 62 IYTTIIDGLCKEGFVDKAKELLLQMK 87 (405)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 87 (405)
+|..|...-...+++++|.+=|.+..
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL 28 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKAL 28 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 45566666666666666666665543
No 470
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=44.29 E-value=1.5e+02 Score=23.04 Aligned_cols=63 Identities=17% Similarity=0.189 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHH-HHHHHHHHHcCCCHHHHHHHHHHHHh
Q 035749 305 IRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVT-YNIMIHALCADGKMDKAHDLFLDMEA 368 (405)
Q Consensus 305 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~ 368 (405)
....+.++..+...|+++.|.+.|.-+.+.. ..|... |..=+..+.+.+......+.++.|..
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHHHH
Confidence 4456777788888888888888888777642 334433 44444455555544444455555543
No 471
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=43.94 E-value=2.1e+02 Score=25.17 Aligned_cols=17 Identities=6% Similarity=-0.013 Sum_probs=7.7
Q ss_pred HHHcCCCHHHHHHHHHH
Q 035749 139 ELCKNGKMEEASQLLEL 155 (405)
Q Consensus 139 ~~~~~~~~~~a~~~~~~ 155 (405)
+|.-.|++.+|.+.|-.
T Consensus 281 ayLmmrryadai~~F~n 297 (525)
T KOG3677|consen 281 AYLMMRRYADAIRVFLN 297 (525)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 472
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=43.92 E-value=1.1e+02 Score=21.41 Aligned_cols=63 Identities=11% Similarity=0.053 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHc----CCCCCcccccccHHHHHHH----HHHHHhcCChHHHHHHHHH
Q 035749 19 VITYSTLINGLCRTGHTIVALNLFEEMIN----GNGEFGVVCKPDAVIYTTI----IDGLCKEGFVDKAKELLLQ 85 (405)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~ 85 (405)
...+..|-.++...|++++++.--+..+. ++.- .+..-..|... ..++-..|+.++|+..|+.
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL----~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL----HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T----TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc----ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 34566778888999999987665555442 1110 12223333332 3345566788887777764
No 473
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=43.83 E-value=90 Score=20.32 Aligned_cols=13 Identities=31% Similarity=0.343 Sum_probs=5.0
Q ss_pred CCHHHHHHHHhhc
Q 035749 319 GRLKIAWELFHSL 331 (405)
Q Consensus 319 ~~~~~a~~~~~~~ 331 (405)
|+.+.|.+++..+
T Consensus 50 g~~~~ar~LL~~L 62 (88)
T cd08819 50 GNESGARELLKRI 62 (88)
T ss_pred CcHHHHHHHHHHh
Confidence 3333333333333
No 474
>PRK09462 fur ferric uptake regulator; Provisional
Probab=43.82 E-value=1.3e+02 Score=22.00 Aligned_cols=62 Identities=18% Similarity=0.263 Sum_probs=43.4
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHhc-CchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCCh
Q 035749 8 TKLKAFGCEPNVITYSTLINGLCRT-GHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFV 76 (405)
Q Consensus 8 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 76 (405)
+.+.+.|.+++..- ..++..+... +..-.|.++++.+.+.+ ...+..|....+..+.+.|-.
T Consensus 6 ~~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~------~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMG------EEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhC------CCCCHHHHHHHHHHHHHCCCE
Confidence 44566787766653 4466666654 56889999999999877 455667777777777777654
No 475
>PRK13342 recombination factor protein RarA; Reviewed
Probab=43.77 E-value=2.4e+02 Score=25.14 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=12.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCC
Q 035749 144 GKMEEASQLLELMIQIGVRPN 164 (405)
Q Consensus 144 ~~~~~a~~~~~~~~~~~~~~~ 164 (405)
++.+.|+.++..|.+.|..|.
T Consensus 244 sd~~aal~~l~~~l~~G~d~~ 264 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPL 264 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 556666666666666654444
No 476
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=43.26 E-value=1.2e+02 Score=21.49 Aligned_cols=44 Identities=11% Similarity=0.041 Sum_probs=26.4
Q ss_pred CChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 035749 74 GFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFI 119 (405)
Q Consensus 74 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 119 (405)
+++.+....+.. ...|. .-+..|......+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~-~~IG~-~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYS-KGIGT-KLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHH-CCcch-hhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555554444432 33442 245667777777777777777777765
No 477
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=43.00 E-value=2.4e+02 Score=24.92 Aligned_cols=142 Identities=13% Similarity=0.072 Sum_probs=70.5
Q ss_pred ChHHHHHHHHHH---HhCCCC-----CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCH
Q 035749 75 FVDKAKELLLQM---KDKNIN-----PDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKM 146 (405)
Q Consensus 75 ~~~~a~~~~~~~---~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 146 (405)
..++..+++++. ...++. .+..+...++.. ..||...++..++.+.... +++... ..
T Consensus 164 ~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~--s~GD~R~aLN~LE~~~~~~-~~~~~~------------~~ 228 (436)
T COG2256 164 SSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRL--SNGDARRALNLLELAALSA-EPDEVL------------IL 228 (436)
T ss_pred CHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHh--cCchHHHHHHHHHHHHHhc-CCCccc------------CH
Confidence 344555555552 223333 344445444432 4688888887777765542 222100 01
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---ccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCCh-----HH
Q 035749 147 EEASQLLELMIQIGVRPNAFVYNTLMDGFC---LTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEI-----EG 218 (405)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~ 218 (405)
+...+++.+-... ...+-..+..+++++. +-.+.+.|+-++-+|.+.|..|....-..++-++-.-|.- .-
T Consensus 229 ~~l~~~l~~~~~~-~Dk~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIGlAdP~Al~~ 307 (436)
T COG2256 229 ELLEEILQRRSAR-FDKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIGLADPNALQV 307 (436)
T ss_pred HHHHHHHhhhhhc-cCCCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCCChhHHHH
Confidence 2222233222222 1333334444455443 3457788888888888877556555555555555554432 23
Q ss_pred HHHHHHHHHhCCCC
Q 035749 219 ALSLYSEMLSKGIK 232 (405)
Q Consensus 219 a~~~~~~~~~~~~~ 232 (405)
|...++.....|.+
T Consensus 308 a~aa~da~~~lG~P 321 (436)
T COG2256 308 AVAALDAVERLGSP 321 (436)
T ss_pred HHHHHHHHHHhCCc
Confidence 44455555555543
No 478
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=42.48 E-value=1.5e+02 Score=22.36 Aligned_cols=44 Identities=20% Similarity=0.144 Sum_probs=22.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCC
Q 035749 101 VIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNG 144 (405)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 144 (405)
++..+...++.-.|.++++.+.+.+...+..|....+..+...|
T Consensus 31 IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 31 VLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 33333334444556666666666555555555444445554444
No 479
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=42.01 E-value=1.9e+02 Score=23.48 Aligned_cols=99 Identities=17% Similarity=-0.023 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhc------CCCcc-----------HHHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 035749 270 TWAYRTFIDGLCKNGYIVEALELFRTLRIL------KCELD-----------IRSYSCLIDGLCKSGRLKIAWELFHSLP 332 (405)
Q Consensus 270 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 332 (405)
..++..-..-+.+.|++.+|..-|+.+... .-+|. ...+..+.+++...|++-++++.-.++.
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 344555566778899999999988876321 11222 2334556677788899999999888888
Q ss_pred CCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 333 RGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 333 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
... +.++.+|-.-..+.+..=+.++|..=|..+++.
T Consensus 258 ~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 258 RHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred hcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 763 347778877777777777889999999998885
No 480
>PHA02875 ankyrin repeat protein; Provisional
Probab=41.73 E-value=2.5e+02 Score=24.83 Aligned_cols=211 Identities=12% Similarity=0.020 Sum_probs=95.8
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChh--hHHHHHHHHhhcCC
Q 035749 140 LCKNGKMEEASQLLELMIQIGVRPNAFV--YNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVF--SYSILINGYCKNKE 215 (405)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~ 215 (405)
.+..|+.+-+. .+.+.|..++... ....+...+..|+.+-+ +.+.+.|..++.. .....+...+..|+
T Consensus 9 A~~~g~~~iv~----~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDIAR----RLLDIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHHHH----HHHHCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 34556765544 4445676665433 23344555667776543 4444455444322 12234556667788
Q ss_pred hHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHH--HHHHHHHHhcCCChHHHHHHH
Q 035749 216 IEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWA--YRTFIDGLCKNGYIVEALELF 293 (405)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~ 293 (405)
.+.+..+++.-.......+....+. +...+..|+.+ +++.+.+.|..++... -...+...+..|+.+-+..++
T Consensus 81 ~~~v~~Ll~~~~~~~~~~~~~g~tp-L~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll 155 (413)
T PHA02875 81 VKAVEELLDLGKFADDVFYKDGMTP-LHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI 155 (413)
T ss_pred HHHHHHHHHcCCcccccccCCCCCH-HHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 8766555543211100111111222 23334556654 3444445554443211 112233444567766554444
Q ss_pred HHHHhcCCCccH---HHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHH---HHHHHHHHHcCCCHHHHHHHHHHHH
Q 035749 294 RTLRILKCELDI---RSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVT---YNIMIHALCADGKMDKAHDLFLDME 367 (405)
Q Consensus 294 ~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~ 367 (405)
+ .|..++. .-.+ .+...+..|+.+-+.-+++ .|..++... ....+...+..|+.+ +.+.+.
T Consensus 156 ~----~g~~~~~~d~~g~T-pL~~A~~~g~~eiv~~Ll~----~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll 222 (413)
T PHA02875 156 D----HKACLDIEDCCGCT-PLIIAMAKGDIAICKMLLD----SGANIDYFGKNGCVAALCYAIENNKID----IVRLFI 222 (413)
T ss_pred h----cCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHh----CCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHH
Confidence 3 3332221 1112 2333445677665555444 333333211 123344344556654 455566
Q ss_pred hCCCCCCHH
Q 035749 368 AKGVAPDCV 376 (405)
Q Consensus 368 ~~~~~~~~~ 376 (405)
+.|..++..
T Consensus 223 ~~gad~n~~ 231 (413)
T PHA02875 223 KRGADCNIM 231 (413)
T ss_pred HCCcCcchH
Confidence 677777643
No 481
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=41.47 E-value=80 Score=21.64 Aligned_cols=11 Identities=9% Similarity=0.386 Sum_probs=4.2
Q ss_pred HHHHHHHHHHC
Q 035749 114 AKRLFIEMMDQ 124 (405)
Q Consensus 114 a~~~~~~~~~~ 124 (405)
|.++++.+.+.
T Consensus 19 a~ei~~~l~~~ 29 (116)
T cd07153 19 AEEIYERLRKK 29 (116)
T ss_pred HHHHHHHHHhc
Confidence 33333333333
No 482
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=41.14 E-value=2.5e+02 Score=24.76 Aligned_cols=61 Identities=16% Similarity=0.139 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 035749 62 IYTTIIDGLCKEGFVDKAKELLLQMKDK--NINP-DVVTYNSVIRGFCYANDSNEAKRLFIEMMD 123 (405)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (405)
+...|++...-.|+.....+.++.+++. |..| -..| -.+.-+|.-.+++.+|.+.|-..+-
T Consensus 237 sL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VT-Y~VGFayLmmrryadai~~F~niLl 300 (525)
T KOG3677|consen 237 SLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVT-YQVGFAYLMMRRYADAIRVFLNILL 300 (525)
T ss_pred HHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEe-eehhHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777789988877777777654 2222 2333 3456677788899999999887654
No 483
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=40.93 E-value=2e+02 Score=23.55 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=15.1
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHH
Q 035749 94 DVVTYNSVIRGFCYANDSNEAKRLF 118 (405)
Q Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~ 118 (405)
++..+..+...+.+.|++.+|...|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 5566666667777777766666544
No 484
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=40.75 E-value=2.1e+02 Score=23.75 Aligned_cols=199 Identities=14% Similarity=0.205 Sum_probs=115.4
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHcCCCCCccccccc-------HHHHHHHHHHHHhcCChHHHHHHHHHHH----hCCCC
Q 035749 24 TLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPD-------AVIYTTIIDGLCKEGFVDKAKELLLQMK----DKNIN 92 (405)
Q Consensus 24 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~ 92 (405)
-+.+-..+.+++++|+..+.+++..| ...+ ..+...+...|...|++..--+...... +...+
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg------~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~ 81 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKG------VSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKP 81 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCC------CChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcch
Confidence 45666788999999999999999876 3333 3356678888999988776655554332 22222
Q ss_pred CChHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCccHh-----hHHHHHHHHHcCCCHHHHHHHHHHH----HHcCCC
Q 035749 93 PDVVTYNSVIRGFCYA-NDSNEAKRLFIEMMDQGVQPNVV-----TFSVIMDELCKNGKMEEASQLLELM----IQIGVR 162 (405)
Q Consensus 93 ~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~ 162 (405)
.......+|+..+-.. ..++..+.+....++....-... .-..++..+.+.|.+..|+.+...+ .+.+-+
T Consensus 82 k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK 161 (421)
T COG5159 82 KITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDK 161 (421)
T ss_pred hHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCc
Confidence 3444555566555433 34566666666555432221111 1234677788999999988766554 344445
Q ss_pred CCHHHHHHH-HHHHHccCCHHHHHHHHHHHHhc----CCCCChhhHHHHHHH--HhhcCChHHHHHHHHHHHh
Q 035749 163 PNAFVYNTL-MDGFCLTGRVNRAKELFVSMESM----GCKHNVFSYSILING--YCKNKEIEGALSLYSEMLS 228 (405)
Q Consensus 163 ~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~ 228 (405)
++..+...+ -..|....+..++..-+..+... -+||....---++++ .+...++..|...|-+..+
T Consensus 162 ~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 162 INLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred cceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 544333222 23555555555555555444322 234444443344433 2445677778877777665
No 485
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=40.68 E-value=1.1e+02 Score=20.96 Aligned_cols=47 Identities=15% Similarity=0.065 Sum_probs=32.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCH
Q 035749 65 TIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDS 111 (405)
Q Consensus 65 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 111 (405)
.++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 34555555666778889999998877666666666666666666643
No 486
>PF13934 ELYS: Nuclear pore complex assembly
Probab=40.20 E-value=1.9e+02 Score=23.06 Aligned_cols=114 Identities=12% Similarity=0.181 Sum_probs=66.0
Q ss_pred HHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHH
Q 035749 245 LFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIA 324 (405)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 324 (405)
+...++++.|...+..- .+.| ..-..++.++...|+...|+.+++...-. ..+......++.. ..++.+.+|
T Consensus 88 ~LD~~~~~~A~~~L~~p---s~~~--~~~~~Il~~L~~~~~~~lAL~y~~~~~p~--l~s~~~~~~~~~~-La~~~v~EA 159 (226)
T PF13934_consen 88 LLDHGDFEEALELLSHP---SLIP--WFPDKILQALLRRGDPKLALRYLRAVGPP--LSSPEALTLYFVA-LANGLVTEA 159 (226)
T ss_pred HhChHhHHHHHHHhCCC---CCCc--ccHHHHHHHHHHCCChhHHHHHHHhcCCC--CCCHHHHHHHHHH-HHcCCHHHH
Confidence 34567788887777322 1122 22335677777789999998888875432 1223333333333 777899999
Q ss_pred HHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 035749 325 WELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVA 372 (405)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 372 (405)
..+-+...+.. ....+..++..+..... + ...++++.+..+.
T Consensus 160 f~~~R~~~~~~---~~~l~e~l~~~~~~~~~--~-~~~~~~Ll~LPl~ 201 (226)
T PF13934_consen 160 FSFQRSYPDEL---RRRLFEQLLEHCLEECA--R-SGRLDELLSLPLD 201 (226)
T ss_pred HHHHHhCchhh---hHHHHHHHHHHHHHHhh--h-hhHHHHHHhCCCC
Confidence 88887766531 24566777776664432 1 2225556654333
No 487
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=39.59 E-value=69 Score=22.21 Aligned_cols=23 Identities=17% Similarity=0.098 Sum_probs=9.5
Q ss_pred HHHHhcCChHHHHHHHHHHHhCC
Q 035749 68 DGLCKEGFVDKAKELLLQMKDKN 90 (405)
Q Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~ 90 (405)
..+...+..-.|.++++.+.+.+
T Consensus 15 ~~l~~~~~~~ta~ei~~~l~~~~ 37 (120)
T PF01475_consen 15 ELLKESPEHLTAEEIYDKLRKKG 37 (120)
T ss_dssp HHHHHHSSSEEHHHHHHHHHHTT
T ss_pred HHHHcCCCCCCHHHHHHHhhhcc
Confidence 33333333444444444444433
No 488
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=38.86 E-value=2e+02 Score=22.99 Aligned_cols=28 Identities=18% Similarity=0.039 Sum_probs=13.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 035749 63 YTTIIDGLCKEGFVDKAKELLLQMKDKN 90 (405)
Q Consensus 63 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 90 (405)
+..++.-+...|+++.|+++.+.+++.|
T Consensus 86 l~~~mvW~~D~Gd~~~AL~ia~yAI~~~ 113 (230)
T PHA02537 86 LMTVMVWRFDIGDFDGALEIAEYALEHG 113 (230)
T ss_pred eeEeeeeeeeccCHHHHHHHHHHHHHcC
Confidence 3333444445555555555555555554
No 489
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.77 E-value=3.5e+02 Score=25.64 Aligned_cols=93 Identities=13% Similarity=0.111 Sum_probs=66.6
Q ss_pred HHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhc
Q 035749 29 LCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYA 108 (405)
Q Consensus 29 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 108 (405)
..+..++..++++|.......+.-.. ...-......+..+|....+.+.|.+++++..+.. +.++.+-..+..+....
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~i~~D~~-~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q~~~~~~~~~E 441 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKDIISDNY-SDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQLLMLQSFLAE 441 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHh
Confidence 45778899999999987765311000 00013456777888889999999999999998864 44566666667777788
Q ss_pred CCHHHHHHHHHHHHH
Q 035749 109 NDSNEAKRLFIEMMD 123 (405)
Q Consensus 109 ~~~~~a~~~~~~~~~ 123 (405)
+..++|+.+......
T Consensus 442 ~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 442 DKSEEALTCLQKIKS 456 (872)
T ss_pred cchHHHHHHHHHHHh
Confidence 899999988776654
No 490
>PRK12356 glutaminase; Reviewed
Probab=38.72 E-value=2.5e+02 Score=23.89 Aligned_cols=15 Identities=20% Similarity=0.578 Sum_probs=7.3
Q ss_pred CCCCChhHHHHHHHH
Q 035749 14 GCEPNVITYSTLING 28 (405)
Q Consensus 14 ~~~~~~~~~~~l~~~ 28 (405)
|.+|+...||+++..
T Consensus 93 G~EPSG~~FNsi~~L 107 (319)
T PRK12356 93 GADPTGLPFNSVIAI 107 (319)
T ss_pred CCCCCCCCcchHHHh
Confidence 444555555555433
No 491
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=38.67 E-value=1e+02 Score=21.37 Aligned_cols=48 Identities=13% Similarity=0.187 Sum_probs=34.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCH
Q 035749 99 NSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKM 146 (405)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 146 (405)
..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 455666666666778888999998888777777777777777777653
No 492
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=38.29 E-value=1.4e+02 Score=21.07 Aligned_cols=73 Identities=12% Similarity=0.186 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc-HhhHHHHHHHHHcCCCHHHHHHHHHH
Q 035749 78 KAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPN-VVTFSVIMDELCKNGKMEEASQLLEL 155 (405)
Q Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 155 (405)
++.+.|..... .+.|+.....-+...-.. ++..++|..|...|+-.. ...|...+..+-..|++.+|.++|+.
T Consensus 51 rc~~~f~~~~~--YknD~RyLkiWi~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 51 RCIRYFEDDER--YKNDPRYLKIWLKYADNC---DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred HHHHHhhhhhh--hcCCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 34444444332 244555444444322222 446788999998876544 34566777788899999999999863
No 493
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=38.24 E-value=1.6e+02 Score=23.53 Aligned_cols=52 Identities=15% Similarity=0.178 Sum_probs=25.9
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 035749 142 KNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESM 194 (405)
Q Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (405)
+.++.+.+.+++.+....- +.....|..+.....+.|+++.|.+-+++..+.
T Consensus 7 ~~~D~~aaaely~qal~la-p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 7 ESGDAEAAAELYNQALELA-PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred ccCChHHHHHHHHHHhhcC-chhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 4455555555555554432 333444455555555555555555555555444
No 494
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=37.94 E-value=1.3e+02 Score=20.55 Aligned_cols=16 Identities=6% Similarity=0.086 Sum_probs=6.0
Q ss_pred ccCCHHHHHHHHHHHH
Q 035749 177 LTGRVNRAKELFVSME 192 (405)
Q Consensus 177 ~~~~~~~a~~~~~~~~ 192 (405)
+.|--+++...+.++.
T Consensus 81 klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 81 KLGLASALESRLTRLA 96 (116)
T ss_dssp HCT-HHHHHHHHHHHC
T ss_pred hhccHHHHHHHHHHHH
Confidence 3344444444444333
No 495
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=37.81 E-value=4.4e+02 Score=26.59 Aligned_cols=248 Identities=11% Similarity=0.025 Sum_probs=136.5
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHH
Q 035749 57 KPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVI 136 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (405)
.+++.+-...+..+.+.+.. .+...+..+.+. ++...-...+.++.+.+........+..+++. ++...-...
T Consensus 632 D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A 704 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPP-GFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAA 704 (897)
T ss_pred CCCHHHHHHHHHHHhhhcch-hHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHH
Confidence 35677777777777777654 455555555543 34444445555554443222222334344433 355544455
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCCh
Q 035749 137 MDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEI 216 (405)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 216 (405)
+..+...+..+ .. .+-...+ .+|..+-...+.++...+..+. +..+.. .++...-...+.++...+..
T Consensus 705 ~~aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 705 LDVLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAG 772 (897)
T ss_pred HHHHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccc
Confidence 55554433111 11 2222222 4555555566666666554432 222222 45666666667777776654
Q ss_pred HH-HHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHH
Q 035749 217 EG-ALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRT 295 (405)
Q Consensus 217 ~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 295 (405)
+. +...+..+.. .++...-...+.++...+..+.+...+..+.. .++..+-...+.++...+.. ++...+..
T Consensus 773 ~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~~-~a~~~L~~ 845 (897)
T PRK13800 773 GAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAAD-VAVPALVE 845 (897)
T ss_pred cchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhcccc-chHHHHHH
Confidence 43 3455555554 34666667777888888876555445555554 34666777777888777753 45555555
Q ss_pred HHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 035749 296 LRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPR 333 (405)
Q Consensus 296 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 333 (405)
+.. .++..+-...+.++...+....+...+..+.+
T Consensus 846 ~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 846 ALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred Hhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 554 56777777777777775434456666666554
No 496
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=37.15 E-value=1.6e+02 Score=24.84 Aligned_cols=65 Identities=11% Similarity=0.154 Sum_probs=28.9
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHH-HHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 59 DAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNS-VIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
|+..|...+....+.+.+.+.-.++.+..+.. |.|+..|-. -..-+...++++.+..+|...++.
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~ 171 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRM 171 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhcc
Confidence 44444444444444445555555555554442 333333322 122233344555555555554443
No 497
>PRK13342 recombination factor protein RarA; Reviewed
Probab=37.03 E-value=3e+02 Score=24.47 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=12.2
Q ss_pred CChHHHHHHHHHHHhCCCCCch
Q 035749 214 KEIEGALSLYSEMLSKGIKPTV 235 (405)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~ 235 (405)
.+.+.|+.++..|.+.|..|..
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~ 265 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLF 265 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHH
Confidence 4555566666666655544443
No 498
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=37.02 E-value=2.2e+02 Score=22.90 Aligned_cols=166 Identities=12% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCCChHHHHH
Q 035749 22 YSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKE-GFVDKAKELLLQMKDKNINPDVVTYNS 100 (405)
Q Consensus 22 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (405)
+..+++.+-+.|++++++..+.++...+ ...+..-.+.+..+|-.. |....+++++..+....-.-.......
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~------~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~ 77 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMN------PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVK 77 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTS------S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccC------CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHH
Q ss_pred HHHHHHhc--CCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCH-----------------HHHHHHHHHHHHc--
Q 035749 101 VIRGFCYA--NDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKM-----------------EEASQLLELMIQI-- 159 (405)
Q Consensus 101 l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------------~~a~~~~~~~~~~-- 159 (405)
++..|.+. .++..--.-.-.++...+.|....-...+-.+-..|++ +.|.+.|+...+.
T Consensus 78 ~i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~ 157 (236)
T PF00244_consen 78 LIKDYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAK 157 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHh
Q ss_pred -CCCCCHHHHHHHHH-----HHHccCCHHHHHHHHHHHHh
Q 035749 160 -GVRPNAFVYNTLMD-----GFCLTGRVNRAKELFVSMES 193 (405)
Q Consensus 160 -~~~~~~~~~~~l~~-----~~~~~~~~~~a~~~~~~~~~ 193 (405)
.++|...++..++- .|--.|+.++|.++.+...+
T Consensus 158 ~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 158 KELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred cccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
No 499
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=36.89 E-value=1.1e+02 Score=19.12 Aligned_cols=33 Identities=9% Similarity=0.116 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhc
Q 035749 180 RVNRAKELFVSMESMGCKHNVFSYSILINGYCKN 213 (405)
Q Consensus 180 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (405)
+.+.|..++..+.... +.++..||++...+.++
T Consensus 12 DtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchh-hcChHHHHHHHHHHHHc
Confidence 3455666666665443 45667777766655543
No 500
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=36.88 E-value=2.5e+02 Score=23.43 Aligned_cols=66 Identities=17% Similarity=0.249 Sum_probs=30.7
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHh----CCCCCchhhH-HHHHHHHHccccHHHHHHHHHHHHHcC
Q 035749 200 VFSYSILINGYCKNKEIEGALSLYSEMLS----KGIKPTVVTY-NTLFIGLFEIHQVERAFKLFDEMQRHG 265 (405)
Q Consensus 200 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~ 265 (405)
..++..+...|++.++.+.+.++.++..+ .|.+.|.... ..+.-.|....-.++.++..+.+.+.|
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkG 185 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKG 185 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
Confidence 34455556666666666665555544333 2333333211 122222333333455555555555554
Done!