Query 035749
Match_columns 405
No_of_seqs 723 out of 1582
Neff 12.3
Searched_HMMs 29240
Date Mon Mar 25 09:52:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035749.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035749hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.3E-38 4.3E-43 290.2 41.4 387 2-404 102-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.2E-36 4.2E-41 277.0 39.7 372 17-403 82-544 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 5.7E-33 1.9E-37 239.2 46.0 372 1-389 16-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 5.4E-33 1.8E-37 239.3 42.8 364 25-404 5-368 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.8E-31 6.2E-36 233.1 23.7 207 37-249 8-224 (501)
6 4g26_A Pentatricopeptide repea 100.0 2.9E-31 1E-35 231.8 24.7 205 3-213 9-223 (501)
7 2gw1_A Mitochondrial precursor 100.0 1.9E-28 6.3E-33 219.1 37.8 371 19-404 6-478 (514)
8 2y4t_A DNAJ homolog subfamily 100.0 8E-28 2.7E-32 211.3 40.7 375 5-395 13-445 (450)
9 2y4t_A DNAJ homolog subfamily 100.0 8.1E-27 2.8E-31 204.9 38.1 349 36-400 9-405 (450)
10 2gw1_A Mitochondrial precursor 100.0 3.8E-27 1.3E-31 210.6 35.8 357 1-375 23-482 (514)
11 3fp2_A TPR repeat-containing p 100.0 5E-26 1.7E-30 204.5 38.6 371 18-404 24-491 (537)
12 3ieg_A DNAJ homolog subfamily 100.0 6.4E-24 2.2E-28 180.7 38.5 333 18-387 2-352 (359)
13 3ieg_A DNAJ homolog subfamily 100.0 9.5E-24 3.3E-28 179.6 38.5 315 59-404 2-335 (359)
14 3fp2_A TPR repeat-containing p 99.9 3.9E-24 1.3E-28 192.2 37.6 354 1-369 42-491 (537)
15 2xm6_A Protein corresponding t 99.9 1.9E-21 6.6E-26 172.2 48.4 362 4-404 27-432 (490)
16 3hym_B Cell division cycle pro 99.9 5.3E-23 1.8E-27 172.9 31.5 289 62-357 24-322 (330)
17 3hym_B Cell division cycle pro 99.9 1.6E-22 5.5E-27 170.0 33.1 295 91-392 18-322 (330)
18 2xm6_A Protein corresponding t 99.9 1.9E-20 6.4E-25 165.8 44.3 334 2-371 61-434 (490)
19 1fch_A Peroxisomal targeting s 99.9 1.7E-22 5.9E-27 172.5 26.2 288 109-402 39-357 (368)
20 2ooe_A Cleavage stimulation fa 99.9 2.5E-20 8.6E-25 166.7 40.3 382 7-403 2-491 (530)
21 1fch_A Peroxisomal targeting s 99.9 3.9E-22 1.3E-26 170.3 25.6 309 31-367 37-357 (368)
22 4eqf_A PEX5-related protein; a 99.9 4.1E-22 1.4E-26 169.9 22.0 265 60-330 65-352 (365)
23 4g1t_A Interferon-induced prot 99.9 5.1E-20 1.7E-24 162.6 35.8 371 17-404 49-459 (472)
24 4eqf_A PEX5-related protein; a 99.9 3.2E-21 1.1E-25 164.4 25.2 266 18-295 64-352 (365)
25 3cv0_A Peroxisome targeting si 99.9 9.6E-21 3.3E-25 158.9 26.8 264 133-402 24-313 (327)
26 3cv0_A Peroxisome targeting si 99.9 2.1E-20 7.2E-25 156.8 27.4 268 59-332 20-313 (327)
27 3mkr_A Coatomer subunit epsilo 99.9 2.7E-19 9.4E-24 146.4 28.6 278 26-328 6-288 (291)
28 1b89_A Protein (clathrin heavy 99.9 4.7E-21 1.6E-25 160.0 16.4 279 1-328 20-305 (449)
29 3mkr_A Coatomer subunit epsilo 99.9 2.3E-19 7.8E-24 146.8 25.8 251 70-368 9-263 (291)
30 2ooe_A Cleavage stimulation fa 99.9 1.5E-17 5E-22 148.8 39.2 354 2-369 30-492 (530)
31 1b89_A Protein (clathrin heavy 99.8 2E-19 6.9E-24 150.3 20.4 282 31-362 15-304 (449)
32 2pl2_A Hypothetical conserved 99.8 1.2E-18 4.2E-23 136.4 22.4 200 16-227 2-212 (217)
33 4g1t_A Interferon-induced prot 99.8 6.6E-18 2.3E-22 149.1 29.5 353 1-370 68-460 (472)
34 3e4b_A ALGK; tetratricopeptide 99.8 4.9E-18 1.7E-22 148.0 26.6 347 24-405 8-388 (452)
35 3e4b_A ALGK; tetratricopeptide 99.8 4.2E-18 1.4E-22 148.5 24.0 366 1-402 20-419 (452)
36 3uq3_A Heat shock protein STI1 99.8 1.3E-17 4.6E-22 134.6 24.3 226 130-369 5-236 (258)
37 3uq3_A Heat shock protein STI1 99.8 1.6E-17 5.6E-22 134.1 23.8 226 59-298 4-235 (258)
38 2pl2_A Hypothetical conserved 99.8 1.6E-17 5.4E-22 130.1 22.4 208 58-295 3-210 (217)
39 1xi4_A Clathrin heavy chain; a 99.8 9.2E-16 3.1E-20 143.4 37.4 322 18-400 984-1305(1630)
40 3u4t_A TPR repeat-containing p 99.8 1.8E-17 6.2E-22 135.0 23.4 236 20-265 4-251 (272)
41 2h6f_A Protein farnesyltransfe 99.8 6.1E-17 2.1E-21 136.8 26.6 246 19-278 97-361 (382)
42 1xi4_A Clathrin heavy chain; a 99.8 3.2E-15 1.1E-19 139.8 39.5 290 60-389 1105-1415(1630)
43 3u4t_A TPR repeat-containing p 99.8 1.3E-16 4.3E-21 130.0 24.9 236 61-300 4-251 (272)
44 2h6f_A Protein farnesyltransfe 99.8 1.6E-16 5.5E-21 134.3 25.6 248 59-314 96-362 (382)
45 1ouv_A Conserved hypothetical 99.8 1.9E-15 6.3E-20 123.1 30.4 224 18-265 5-252 (273)
46 2ho1_A Type 4 fimbrial biogene 99.8 3.8E-16 1.3E-20 125.6 26.0 201 60-264 37-238 (252)
47 1ouv_A Conserved hypothetical 99.8 3.3E-15 1.1E-19 121.6 31.7 226 57-300 3-252 (273)
48 2vq2_A PILW, putative fimbrial 99.8 5.2E-16 1.8E-20 122.4 25.8 202 18-229 7-211 (225)
49 1xnf_A Lipoprotein NLPI; TPR, 99.8 3E-17 1E-21 133.9 18.8 183 109-297 19-204 (275)
50 2q7f_A YRRB protein; TPR, prot 99.8 8.5E-17 2.9E-21 128.6 20.8 202 17-229 21-222 (243)
51 1xnf_A Lipoprotein NLPI; TPR, 99.8 9.4E-17 3.2E-21 131.0 20.9 227 29-264 15-244 (275)
52 2ho1_A Type 4 fimbrial biogene 99.8 2.2E-15 7.6E-20 121.1 26.5 207 95-306 37-244 (252)
53 2vq2_A PILW, putative fimbrial 99.7 3.1E-15 1.1E-19 118.0 26.3 205 57-264 5-211 (225)
54 2q7f_A YRRB protein; TPR, prot 99.7 3E-16 1E-20 125.5 20.3 201 59-264 22-222 (243)
55 3sf4_A G-protein-signaling mod 99.7 1.2E-16 4.2E-21 138.0 18.1 170 57-227 6-214 (406)
56 3spa_A Mtrpol, DNA-directed RN 99.7 1.4E-17 4.8E-22 150.7 12.2 150 19-179 127-286 (1134)
57 4e6h_A MRNA 3'-END-processing 99.7 7.3E-14 2.5E-18 125.9 36.2 390 3-403 51-569 (679)
58 4a1s_A PINS, partner of inscut 99.7 2.1E-16 7.2E-21 136.8 19.4 273 96-369 49-372 (411)
59 3sf4_A G-protein-signaling mod 99.7 2.6E-16 9E-21 136.0 19.9 301 16-321 6-363 (406)
60 3spa_A Mtrpol, DNA-directed RN 99.7 1.3E-17 4.4E-22 150.9 10.4 151 59-214 126-286 (1134)
61 4a1s_A PINS, partner of inscut 99.7 7.5E-16 2.6E-20 133.4 20.7 276 58-334 46-372 (411)
62 3ulq_A Response regulator aspa 99.7 9.4E-15 3.2E-19 125.1 26.3 298 69-368 21-367 (383)
63 3ro2_A PINS homolog, G-protein 99.7 7.7E-16 2.6E-20 129.4 18.7 132 272-403 185-331 (338)
64 2ond_A Cleavage stimulation fa 99.7 4.3E-14 1.5E-18 117.0 28.5 235 20-264 9-270 (308)
65 3vtx_A MAMA; tetratricopeptide 99.7 6.5E-15 2.2E-19 112.2 21.7 167 18-194 4-170 (184)
66 4abn_A Tetratricopeptide repea 99.7 1.1E-15 3.9E-20 134.0 19.3 216 33-261 82-318 (474)
67 2ond_A Cleavage stimulation fa 99.7 2.5E-14 8.4E-19 118.5 25.8 218 2-229 34-270 (308)
68 3ro2_A PINS homolog, G-protein 99.7 1E-15 3.5E-20 128.6 17.8 279 59-369 4-332 (338)
69 3ulq_A Response regulator aspa 99.7 8.1E-15 2.8E-19 125.5 23.1 299 29-333 22-367 (383)
70 3vtx_A MAMA; tetratricopeptide 99.7 2.3E-14 7.9E-19 109.1 22.4 168 58-229 3-170 (184)
71 4abn_A Tetratricopeptide repea 99.7 8.1E-15 2.8E-19 128.6 21.0 217 74-296 82-318 (474)
72 3nf1_A KLC 1, kinesin light ch 99.6 5.6E-15 1.9E-19 122.7 15.8 177 18-194 26-224 (311)
73 3nf1_A KLC 1, kinesin light ch 99.6 4.3E-15 1.5E-19 123.4 14.8 173 56-228 23-223 (311)
74 3q15_A PSP28, response regulat 99.6 7.7E-13 2.6E-17 113.0 27.6 309 57-368 7-364 (378)
75 4e6h_A MRNA 3'-END-processing 99.6 1.7E-11 5.7E-16 110.7 36.8 371 2-383 84-582 (679)
76 3q15_A PSP28, response regulat 99.6 3.8E-13 1.3E-17 114.9 24.3 313 16-333 7-364 (378)
77 4gyw_A UDP-N-acetylglucosamine 99.6 9.7E-14 3.3E-18 126.6 19.9 168 16-193 6-173 (723)
78 1hz4_A MALT regulatory protein 99.6 2.8E-12 9.7E-17 109.3 27.9 272 98-369 17-322 (373)
79 4gyw_A UDP-N-acetylglucosamine 99.6 2.3E-13 7.9E-18 124.1 21.5 169 56-228 5-173 (723)
80 4i17_A Hypothetical protein; T 99.6 6.2E-13 2.1E-17 104.9 21.1 197 16-229 4-209 (228)
81 1hz4_A MALT regulatory protein 99.6 5.1E-12 1.7E-16 107.7 28.0 234 22-261 17-279 (373)
82 3as5_A MAMA; tetratricopeptide 99.6 5.7E-13 1.9E-17 101.4 19.9 165 20-194 9-173 (186)
83 3as5_A MAMA; tetratricopeptide 99.6 1.3E-12 4.5E-17 99.4 20.3 167 59-229 7-173 (186)
84 4i17_A Hypothetical protein; T 99.6 3E-12 1E-16 101.0 22.9 153 57-212 4-165 (228)
85 3edt_B KLC 2, kinesin light ch 99.5 5.1E-13 1.8E-17 109.1 14.4 227 2-229 26-281 (283)
86 3edt_B KLC 2, kinesin light ch 99.5 1.1E-12 3.7E-17 107.2 16.1 234 30-264 12-281 (283)
87 2uy1_A Cleavage stimulation fa 99.4 5.5E-10 1.9E-14 97.9 30.2 356 21-403 17-412 (493)
88 3qky_A Outer membrane assembly 99.4 1.8E-11 6E-16 98.7 18.6 191 16-229 12-224 (261)
89 1qqe_A Vesicular transport pro 99.4 2E-11 6.9E-16 100.0 19.1 241 113-379 3-275 (292)
90 3mv2_B Coatomer subunit epsilo 99.4 2.6E-10 8.8E-15 91.6 24.7 245 26-300 20-283 (310)
91 3urz_A Uncharacterized protein 99.4 1.8E-11 6.2E-16 94.8 17.7 115 18-141 3-133 (208)
92 2pzi_A Probable serine/threoni 99.4 6.3E-12 2.1E-16 115.3 16.2 174 30-215 402-583 (681)
93 3mv2_B Coatomer subunit epsilo 99.4 1.9E-10 6.4E-15 92.4 22.3 249 102-376 20-287 (310)
94 3rjv_A Putative SEL1 repeat pr 99.4 1.2E-10 4.2E-15 90.4 20.7 176 2-195 4-198 (212)
95 3qky_A Outer membrane assembly 99.4 8.2E-11 2.8E-15 94.8 19.9 212 57-289 12-251 (261)
96 4ga2_A E3 SUMO-protein ligase 99.4 6.2E-12 2.1E-16 91.7 10.9 146 25-180 3-149 (150)
97 1qqe_A Vesicular transport pro 99.4 6.1E-11 2.1E-15 97.2 18.0 233 2-263 3-268 (292)
98 3urz_A Uncharacterized protein 99.4 1.2E-10 4E-15 90.2 18.6 125 136-264 60-186 (208)
99 2fo7_A Synthetic consensus TPR 99.4 1E-10 3.5E-15 83.6 17.0 130 21-159 3-132 (136)
100 2uy1_A Cleavage stimulation fa 99.3 7.5E-09 2.6E-13 90.8 31.5 342 1-368 31-412 (493)
101 3qou_A Protein YBBN; thioredox 99.3 4.9E-11 1.7E-15 97.3 16.2 167 57-227 114-282 (287)
102 3dra_A Protein farnesyltransfe 99.3 1.1E-09 3.8E-14 88.9 23.8 217 1-228 50-286 (306)
103 2fo7_A Synthetic consensus TPR 99.3 2.7E-10 9.2E-15 81.3 18.1 130 62-194 3-132 (136)
104 3dra_A Protein farnesyltransfe 99.3 5E-09 1.7E-13 85.1 27.0 227 26-263 39-286 (306)
105 2pzi_A Probable serine/threoni 99.3 6.2E-11 2.1E-15 108.7 17.7 174 176-355 402-583 (681)
106 3rjv_A Putative SEL1 repeat pr 99.3 7.9E-10 2.7E-14 85.8 21.2 176 78-265 4-198 (212)
107 2yhc_A BAMD, UPF0169 lipoprote 99.3 4.8E-10 1.6E-14 88.0 20.0 188 18-230 3-214 (225)
108 2vsy_A XCC0866; transferase, g 99.3 1.3E-10 4.5E-15 104.8 18.6 163 32-205 2-167 (568)
109 3qou_A Protein YBBN; thioredox 99.3 2.8E-10 9.6E-15 92.9 18.6 168 92-263 114-283 (287)
110 2r5s_A Uncharacterized protein 99.3 5E-11 1.7E-15 89.7 13.1 162 21-192 8-171 (176)
111 4ga2_A E3 SUMO-protein ligase 99.3 1.8E-11 6.1E-16 89.3 10.2 146 241-390 3-149 (150)
112 2vsy_A XCC0866; transferase, g 99.2 3.4E-10 1.2E-14 102.1 17.8 150 1-160 6-158 (568)
113 2r5s_A Uncharacterized protein 99.2 9.3E-11 3.2E-15 88.2 11.9 164 61-228 7-172 (176)
114 2yhc_A BAMD, UPF0169 lipoprote 99.2 3.2E-09 1.1E-13 83.3 20.7 188 59-265 3-214 (225)
115 2ifu_A Gamma-SNAP; membrane fu 99.2 1.4E-09 4.9E-14 89.7 16.4 94 238-332 119-222 (307)
116 2ifu_A Gamma-SNAP; membrane fu 99.2 2.2E-09 7.6E-14 88.6 16.9 161 31-192 3-182 (307)
117 4gco_A Protein STI-1; structur 99.2 1.7E-09 5.9E-14 75.9 13.9 97 20-124 14-110 (126)
118 2c2l_A CHIP, carboxy terminus 99.1 9.5E-10 3.2E-14 89.4 13.6 195 18-228 3-198 (281)
119 3q7a_A Farnesyltransferase alp 99.1 1.1E-07 3.9E-12 78.0 25.5 183 22-215 57-257 (349)
120 4gco_A Protein STI-1; structur 99.1 3.3E-09 1.1E-13 74.5 14.4 111 59-172 12-122 (126)
121 3u3w_A Transcriptional activat 99.1 1.5E-08 5E-13 83.1 20.1 209 8-228 35-265 (293)
122 1hh8_A P67PHOX, NCF-2, neutrop 99.1 1.2E-08 4E-13 79.3 18.1 129 21-160 8-151 (213)
123 1hh8_A P67PHOX, NCF-2, neutrop 99.1 2.4E-08 8.2E-13 77.5 19.3 130 60-195 6-151 (213)
124 3gyz_A Chaperone protein IPGC; 99.1 8E-10 2.7E-14 80.0 9.8 100 58-159 34-133 (151)
125 1a17_A Serine/threonine protei 99.1 7.6E-09 2.6E-13 76.7 15.4 96 21-124 15-110 (166)
126 3q7a_A Farnesyltransferase alp 99.1 7.2E-07 2.5E-11 73.3 27.8 218 147-369 71-331 (349)
127 2c2l_A CHIP, carboxy terminus 99.1 2.8E-09 9.5E-14 86.6 13.7 193 130-333 4-198 (281)
128 3u3w_A Transcriptional activat 99.1 5.7E-08 1.9E-12 79.5 21.7 199 56-263 42-265 (293)
129 3gyz_A Chaperone protein IPGC; 99.1 1.1E-09 3.7E-14 79.4 9.7 126 60-195 9-134 (151)
130 2lni_A Stress-induced-phosphop 99.0 7.9E-09 2.7E-13 73.4 14.0 99 18-124 15-113 (133)
131 2qfc_A PLCR protein; TPR, HTH, 99.0 2E-07 6.8E-12 76.3 23.6 163 62-225 77-262 (293)
132 1a17_A Serine/threonine protei 99.0 2.3E-08 7.8E-13 74.1 16.3 130 60-192 13-144 (166)
133 1na0_A Designed protein CTPR3; 99.0 1.4E-08 4.8E-13 71.1 14.1 98 19-124 9-106 (125)
134 2vgx_A Chaperone SYCD; alterna 99.0 5.9E-09 2E-13 75.6 12.3 111 40-159 8-118 (148)
135 1p5q_A FKBP52, FK506-binding p 99.0 1.5E-09 5.3E-14 90.5 10.2 137 18-156 146-291 (336)
136 2lni_A Stress-induced-phosphop 99.0 2.4E-08 8.2E-13 70.8 14.9 121 56-179 12-132 (133)
137 2vgx_A Chaperone SYCD; alterna 99.0 1.1E-08 3.8E-13 74.1 13.2 110 6-124 9-118 (148)
138 2qfc_A PLCR protein; TPR, HTH, 99.0 6.8E-08 2.3E-12 79.1 19.5 172 21-193 77-265 (293)
139 4f3v_A ESX-1 secretion system 99.0 1.5E-08 5.2E-13 80.3 14.8 199 2-206 24-247 (282)
140 1p5q_A FKBP52, FK506-binding p 99.0 1.5E-09 5.1E-14 90.7 9.6 143 32-184 126-283 (336)
141 4f3v_A ESX-1 secretion system 99.0 2E-08 6.8E-13 79.6 15.4 187 31-229 18-237 (282)
142 2vyi_A SGTA protein; chaperone 99.0 7.1E-09 2.4E-13 73.3 11.9 97 20-124 13-109 (131)
143 3dss_A Geranylgeranyl transfer 99.0 7.5E-07 2.6E-11 72.8 24.9 183 1-194 47-267 (331)
144 2e2e_A Formate-dependent nitri 99.0 4E-09 1.4E-13 79.3 10.9 123 29-160 20-145 (177)
145 2vyi_A SGTA protein; chaperone 99.0 2.3E-08 7.9E-13 70.6 14.3 121 57-180 9-129 (131)
146 3gw4_A Uncharacterized protein 99.0 7.1E-09 2.4E-13 79.8 12.1 158 211-369 3-176 (203)
147 3dss_A Geranylgeranyl transfer 99.0 2.3E-06 7.9E-11 70.0 27.1 173 28-211 38-238 (331)
148 3gw4_A Uncharacterized protein 99.0 1.4E-08 4.7E-13 78.2 13.6 158 29-193 2-175 (203)
149 1na0_A Designed protein CTPR3; 99.0 5.1E-08 1.8E-12 68.1 15.5 113 60-175 9-121 (125)
150 2e2e_A Formate-dependent nitri 99.0 1.8E-08 6.3E-13 75.6 13.9 117 1-126 27-146 (177)
151 3upv_A Heat shock protein STI1 99.0 2.1E-08 7.3E-13 70.5 13.0 98 19-124 4-101 (126)
152 2xcb_A PCRH, regulatory protei 99.0 6E-09 2E-13 75.1 10.2 99 18-124 17-115 (142)
153 2xcb_A PCRH, regulatory protei 98.9 1.3E-08 4.4E-13 73.3 11.2 101 57-159 15-115 (142)
154 1elw_A TPR1-domain of HOP; HOP 98.9 8.5E-08 2.9E-12 66.2 14.7 99 19-125 4-102 (118)
155 2fbn_A 70 kDa peptidylprolyl i 98.9 4.4E-09 1.5E-13 80.7 8.2 165 27-220 12-176 (198)
156 2kck_A TPR repeat; tetratricop 98.9 3.7E-08 1.3E-12 67.4 11.8 101 17-125 4-107 (112)
157 4gcn_A Protein STI-1; structur 98.9 6.7E-08 2.3E-12 67.9 12.3 97 20-123 9-111 (127)
158 3upv_A Heat shock protein STI1 98.8 1.7E-07 5.9E-12 65.7 14.5 99 59-159 3-101 (126)
159 1elw_A TPR1-domain of HOP; HOP 98.8 3E-07 1E-11 63.4 15.6 109 59-170 3-111 (118)
160 2fbn_A 70 kDa peptidylprolyl i 98.8 1E-08 3.4E-13 78.7 8.2 97 166-264 89-186 (198)
161 3sz7_A HSC70 cochaperone (SGT) 98.8 8.9E-08 3E-12 70.8 13.0 99 18-124 10-108 (164)
162 4gcn_A Protein STI-1; structur 98.8 1.5E-07 5.2E-12 66.0 13.4 107 59-168 7-119 (127)
163 3q49_B STIP1 homology and U bo 98.8 1.3E-07 4.6E-12 67.4 13.4 100 17-124 7-106 (137)
164 2dba_A Smooth muscle cell asso 98.8 3E-07 1E-11 66.4 15.5 99 18-124 27-128 (148)
165 1hxi_A PEX5, peroxisome target 98.8 7E-08 2.4E-12 67.1 10.6 96 21-124 19-114 (121)
166 3sz7_A HSC70 cochaperone (SGT) 98.8 3E-07 1E-11 67.9 13.7 102 57-160 8-109 (164)
167 3q49_B STIP1 homology and U bo 98.7 2.6E-07 8.7E-12 65.9 12.8 101 57-159 6-106 (137)
168 1elr_A TPR2A-domain of HOP; HO 98.7 6.2E-08 2.1E-12 68.4 9.5 98 20-124 5-108 (131)
169 1elr_A TPR2A-domain of HOP; HO 98.7 1.6E-07 5.6E-12 66.1 11.7 112 59-173 3-120 (131)
170 2kck_A TPR repeat; tetratricop 98.7 3.7E-07 1.3E-11 62.3 12.5 91 136-228 12-105 (112)
171 2dba_A Smooth muscle cell asso 98.7 1.1E-06 3.6E-11 63.5 15.5 111 57-171 25-139 (148)
172 1kt0_A FKBP51, 51 kDa FK506-bi 98.7 5.1E-08 1.7E-12 85.0 8.9 124 18-150 267-405 (457)
173 2xev_A YBGF; tetratricopeptide 98.7 8.6E-07 2.9E-11 62.3 13.8 98 22-124 5-105 (129)
174 4b4t_Q 26S proteasome regulato 98.7 2.8E-06 9.7E-11 73.7 19.9 197 172-368 11-244 (434)
175 1kt0_A FKBP51, 51 kDa FK506-bi 98.7 4.1E-08 1.4E-12 85.6 7.6 158 33-220 248-405 (457)
176 4b4t_Q 26S proteasome regulato 98.7 4.2E-06 1.4E-10 72.7 20.3 198 66-263 10-244 (434)
177 1hxi_A PEX5, peroxisome target 98.7 2E-07 6.7E-12 64.8 9.5 95 273-369 20-114 (121)
178 1wao_1 Serine/threonine protei 98.6 2.9E-08 9.9E-13 86.9 5.2 125 21-154 8-134 (477)
179 1ihg_A Cyclophilin 40; ppiase 98.6 7.5E-07 2.6E-11 75.2 13.6 128 20-149 224-360 (370)
180 3rkv_A Putative peptidylprolyl 98.6 1.2E-06 4E-11 64.6 13.1 105 19-124 11-126 (162)
181 3ro3_A PINS homolog, G-protein 98.6 1.1E-06 3.7E-11 64.5 12.4 102 20-122 10-116 (164)
182 3ro3_A PINS homolog, G-protein 98.6 2.8E-07 9.6E-12 67.7 9.0 130 273-402 12-156 (164)
183 2xev_A YBGF; tetratricopeptide 98.6 4.6E-06 1.6E-10 58.5 14.9 94 64-159 6-105 (129)
184 3k9i_A BH0479 protein; putativ 98.5 4E-07 1.4E-11 62.8 8.6 89 31-124 2-90 (117)
185 1wao_1 Serine/threonine protei 98.5 2.8E-07 9.5E-12 80.7 9.3 118 279-399 15-134 (477)
186 1dce_A Protein (RAB geranylger 98.5 3.6E-06 1.2E-10 75.1 16.3 171 1-182 46-243 (567)
187 1dce_A Protein (RAB geranylger 98.5 9.6E-06 3.3E-10 72.4 19.0 179 29-218 38-244 (567)
188 1ihg_A Cyclophilin 40; ppiase 98.5 1.8E-06 6.2E-11 72.8 13.4 138 60-219 223-360 (370)
189 3rkv_A Putative peptidylprolyl 98.5 1.3E-06 4.4E-11 64.3 10.9 100 59-159 10-126 (162)
190 3k9i_A BH0479 protein; putativ 98.5 4.8E-07 1.6E-11 62.4 8.0 83 1-90 7-91 (117)
191 2hr2_A Hypothetical protein; a 98.5 2.4E-06 8.4E-11 61.1 11.1 104 19-123 11-130 (159)
192 2if4_A ATFKBP42; FKBP-like, al 98.5 8.3E-07 2.8E-11 74.1 10.2 149 19-194 179-328 (338)
193 3n71_A Histone lysine methyltr 98.4 2.4E-06 8.4E-11 74.3 11.1 131 28-158 318-463 (490)
194 1klx_A Cysteine rich protein B 98.4 8.8E-06 3E-10 57.8 12.2 112 248-370 8-127 (138)
195 2if4_A ATFKBP42; FKBP-like, al 98.4 2.7E-06 9.1E-11 71.0 10.7 149 200-369 179-328 (338)
196 1klx_A Cysteine rich protein B 98.4 2.6E-05 8.9E-10 55.4 14.2 110 34-160 10-127 (138)
197 2hr2_A Hypothetical protein; a 98.3 1.3E-05 4.4E-10 57.4 12.2 98 60-158 11-130 (159)
198 2kat_A Uncharacterized protein 98.3 6.7E-06 2.3E-10 56.4 10.3 81 1-89 2-82 (115)
199 2l6j_A TPR repeat-containing p 98.3 3.5E-06 1.2E-10 57.2 8.3 93 18-118 3-101 (111)
200 2l6j_A TPR repeat-containing p 98.3 8.3E-07 2.9E-11 60.4 5.0 94 304-400 3-103 (111)
201 3n71_A Histone lysine methyltr 98.3 7.9E-06 2.7E-10 71.2 12.0 88 70-157 319-420 (490)
202 1na3_A Designed protein CTPR2; 98.3 9.3E-06 3.2E-10 52.7 9.8 80 19-106 9-88 (91)
203 2kat_A Uncharacterized protein 98.2 1.6E-05 5.4E-10 54.5 9.8 80 37-124 3-82 (115)
204 1zu2_A Mitochondrial import re 98.2 6E-06 2.1E-10 59.0 7.5 87 30-124 13-120 (158)
205 1na3_A Designed protein CTPR2; 98.1 5.4E-05 1.8E-09 49.0 10.6 61 133-194 12-72 (91)
206 1zu2_A Mitochondrial import re 98.1 1.2E-05 4.2E-10 57.4 7.6 93 1-103 19-132 (158)
207 3ma5_A Tetratricopeptide repea 98.0 3.4E-05 1.2E-09 51.2 8.3 67 16-89 4-70 (100)
208 3ly7_A Transcriptional activat 98.0 0.00024 8.3E-09 58.4 14.5 136 15-159 190-339 (372)
209 3ma5_A Tetratricopeptide repea 97.9 9.3E-05 3.2E-09 49.0 9.0 66 57-123 4-69 (100)
210 3qwp_A SET and MYND domain-con 97.7 0.00029 9.8E-09 60.5 11.4 100 24-123 292-399 (429)
211 3qww_A SET and MYND domain-con 97.7 0.00013 4.5E-09 62.5 8.3 93 31-123 310-410 (433)
212 3ly7_A Transcriptional activat 97.6 0.0019 6.4E-08 53.3 13.6 74 302-379 274-347 (372)
213 3u64_A Protein TP_0956; tetrat 97.6 0.0075 2.6E-07 47.7 16.3 85 146-232 179-272 (301)
214 3bee_A Putative YFRE protein; 97.6 0.0012 4E-08 42.8 10.1 68 16-90 3-73 (93)
215 2kc7_A BFR218_protein; tetratr 97.5 0.001 3.5E-08 43.6 9.4 67 24-98 5-72 (99)
216 2v5f_A Prolyl 4-hydroxylase su 97.5 0.001 3.5E-08 44.3 9.2 80 17-97 3-82 (104)
217 1pc2_A Mitochondria fission pr 97.4 0.0013 4.6E-08 46.4 9.0 79 288-368 16-99 (152)
218 2kc7_A BFR218_protein; tetratr 97.4 0.001 3.5E-08 43.6 8.2 56 243-299 8-64 (99)
219 3qwp_A SET and MYND domain-con 97.4 0.0013 4.6E-08 56.4 10.8 62 131-192 330-398 (429)
220 3qww_A SET and MYND domain-con 97.4 0.0006 2.1E-08 58.4 8.6 84 179-262 312-409 (433)
221 3bee_A Putative YFRE protein; 97.3 0.0027 9.2E-08 41.0 9.1 68 57-125 3-73 (93)
222 4h7y_A Dual specificity protei 97.2 0.0079 2.7E-07 41.9 10.9 105 16-128 10-127 (161)
223 1pc2_A Mitochondria fission pr 97.2 0.007 2.4E-07 42.7 10.6 82 77-159 15-100 (152)
224 2v5f_A Prolyl 4-hydroxylase su 97.0 0.011 3.7E-07 39.2 10.1 27 167-193 48-74 (104)
225 3mkq_A Coatomer beta'-subunit; 97.0 0.059 2E-06 50.8 18.8 45 176-226 663-707 (814)
226 3mkq_B Coatomer subunit alpha; 96.9 0.062 2.1E-06 39.0 13.9 129 243-401 13-141 (177)
227 1nzn_A CGI-135 protein, fissio 96.9 0.013 4.5E-07 39.7 9.8 85 284-369 15-103 (126)
228 3mkq_A Coatomer beta'-subunit; 96.9 0.029 1E-06 52.9 15.7 154 175-367 609-763 (814)
229 4h7y_A Dual specificity protei 96.9 0.033 1.1E-06 38.9 11.5 103 56-160 9-124 (161)
230 3u64_A Protein TP_0956; tetrat 96.9 0.12 4.1E-06 41.0 19.2 87 111-197 179-272 (301)
231 3mkq_B Coatomer subunit alpha; 96.7 0.085 2.9E-06 38.3 13.1 102 69-191 14-115 (177)
232 1wy6_A Hypothetical protein ST 96.6 0.093 3.2E-06 35.8 13.7 139 30-196 18-156 (172)
233 1wy6_A Hypothetical protein ST 96.5 0.1 3.5E-06 35.6 13.1 82 318-405 74-155 (172)
234 1nzn_A CGI-135 protein, fissio 96.4 0.034 1.2E-06 37.7 9.0 82 77-159 18-103 (126)
235 3lvg_A Clathrin heavy chain 1; 96.3 5.2E-06 1.8E-10 69.7 -12.3 263 61-360 55-324 (624)
236 4ady_A RPN2, 26S proteasome re 96.2 0.81 2.8E-05 43.1 24.3 267 61-333 375-657 (963)
237 4ady_A RPN2, 26S proteasome re 96.0 1.1 3.7E-05 42.2 25.1 297 64-368 343-657 (963)
238 3lvg_A Clathrin heavy chain 1; 95.8 6.4E-07 2.2E-11 75.0 -19.7 166 18-219 53-218 (624)
239 4gns_B Protein CSD3, chitin bi 95.5 0.25 8.6E-06 45.3 12.8 56 276-332 343-398 (754)
240 3o48_A Mitochondria fission 1 95.1 0.33 1.1E-05 33.1 9.4 72 302-375 37-111 (134)
241 4b4t_P 26S proteasome regulato 94.9 1.6 5.6E-05 37.6 16.8 190 178-369 29-247 (445)
242 4gns_B Protein CSD3, chitin bi 94.9 0.25 8.7E-06 45.3 11.2 52 349-401 346-397 (754)
243 2ff4_A Probable regulatory pro 94.7 0.26 8.8E-06 41.7 10.2 80 60-140 171-255 (388)
244 4b4t_P 26S proteasome regulato 94.6 1.9 6.6E-05 37.1 18.4 50 109-158 30-84 (445)
245 1qsa_A Protein (soluble lytic 94.5 2.6 8.9E-05 38.0 28.6 116 249-368 228-347 (618)
246 3ffl_A Anaphase-promoting comp 94.4 0.29 9.8E-06 35.0 8.1 133 14-159 13-151 (167)
247 1y8m_A FIS1; mitochondria, unk 94.3 0.86 3E-05 31.6 11.2 71 302-374 36-109 (144)
248 3o48_A Mitochondria fission 1 94.2 0.68 2.3E-05 31.6 9.3 68 92-159 37-107 (134)
249 2ff4_A Probable regulatory pro 94.2 0.49 1.7E-05 40.0 10.7 78 97-175 173-255 (388)
250 4fhn_B Nucleoporin NUP120; pro 93.9 2.9 9.8E-05 41.2 16.7 131 131-263 900-1049(1139)
251 1v54_E Cytochrome C oxidase po 93.5 0.46 1.6E-05 30.4 6.8 59 3-68 29-87 (109)
252 1y8m_A FIS1; mitochondria, unk 93.1 1.5 5.1E-05 30.4 11.4 68 92-159 36-106 (144)
253 4fhn_B Nucleoporin NUP120; pro 92.8 2.6 8.8E-05 41.5 14.6 133 164-298 898-1049(1139)
254 3ffl_A Anaphase-promoting comp 92.5 2.1 7.2E-05 30.6 10.6 30 304-333 121-150 (167)
255 1zbp_A Hypothetical protein VP 92.5 2.9 9.9E-05 32.7 11.5 116 244-369 6-129 (273)
256 1v54_E Cytochrome C oxidase po 92.0 1.6 5.4E-05 28.1 9.2 46 323-368 28-73 (109)
257 2wpv_A GET4, UPF0363 protein Y 91.0 5.3 0.00018 32.3 18.7 112 203-329 36-158 (312)
258 2p58_C Putative type III secre 90.8 2.2 7.4E-05 27.3 7.5 88 32-134 20-107 (116)
259 2y69_E Cytochrome C oxidase su 90.5 2.8 9.5E-05 28.7 8.2 42 290-331 73-114 (152)
260 2y69_E Cytochrome C oxidase su 89.9 3.4 0.00012 28.3 9.2 63 320-383 68-130 (152)
261 2uwj_G Type III export protein 89.5 2 6.8E-05 27.4 6.5 88 32-134 19-106 (115)
262 4b4t_R RPN7, 26S proteasome re 89.5 7.1 0.00024 33.5 12.5 99 96-194 132-237 (429)
263 4b4t_R RPN7, 26S proteasome re 89.4 3.4 0.00012 35.4 10.5 99 61-159 132-237 (429)
264 3esl_A Checkpoint serine/threo 87.8 5.4 0.00019 29.6 9.0 86 36-130 61-150 (202)
265 1zbp_A Hypothetical protein VP 87.4 4 0.00014 32.0 8.5 56 27-89 5-60 (273)
266 2wpv_A GET4, UPF0363 protein Y 87.3 10 0.00036 30.6 18.9 109 101-224 39-158 (312)
267 3esl_A Checkpoint serine/threo 86.9 7.9 0.00027 28.8 9.7 88 77-166 61-151 (202)
268 3lpz_A GET4 (YOR164C homolog); 85.3 14 0.00048 30.2 22.3 113 61-188 36-159 (336)
269 4a1g_A Mitotic checkpoint seri 82.8 10 0.00035 26.7 9.0 73 56-131 64-137 (152)
270 3txn_A 26S proteasome regulato 82.2 22 0.00074 30.0 24.2 168 21-191 21-207 (394)
271 3lpz_A GET4 (YOR164C homolog); 81.9 20 0.00068 29.3 23.1 26 303-328 134-159 (336)
272 2wvi_A Mitotic checkpoint seri 79.0 15 0.00052 26.3 8.6 74 56-132 59-133 (164)
273 3txn_A 26S proteasome regulato 78.4 29 0.001 29.2 24.8 167 60-227 19-208 (394)
274 4b4t_S RPN3, 26S proteasome re 77.9 35 0.0012 29.9 11.7 65 20-89 232-299 (523)
275 4a1g_A Mitotic checkpoint seri 77.1 17 0.00057 25.7 9.2 73 92-167 65-138 (152)
276 2wvi_A Mitotic checkpoint seri 72.6 24 0.00081 25.3 9.4 73 92-167 60-133 (164)
277 3eiq_C Programmed cell death p 72.4 40 0.0014 27.9 15.2 69 308-377 220-290 (358)
278 4gq2_M Nucleoporin NUP120; bet 71.4 76 0.0026 30.6 13.3 107 276-388 816-949 (950)
279 2uwj_G Type III export protein 71.0 18 0.00061 23.2 8.8 16 142-157 80-95 (115)
280 2p58_C Putative type III secre 70.0 19 0.00065 23.2 9.4 10 107-116 52-61 (116)
281 3bu8_A Telomeric repeat-bindin 69.1 22 0.00076 26.6 6.9 49 1-49 89-144 (235)
282 1bpo_A Protein (clathrin); cla 69.0 42 0.0014 28.9 9.5 142 32-192 342-483 (494)
283 4aez_C MAD3, mitotic spindle c 64.9 32 0.0011 26.1 7.3 53 112-164 131-184 (223)
284 2b7e_A PRE-mRNA processing pro 58.9 12 0.00041 21.2 3.1 32 1-32 3-35 (59)
285 4b4t_S RPN3, 26S proteasome re 58.7 95 0.0033 27.3 10.2 25 237-261 233-257 (523)
286 1qsa_A Protein (soluble lytic 58.0 1.1E+02 0.0037 27.7 36.6 316 61-398 73-436 (618)
287 4aez_C MAD3, mitotic spindle c 57.6 60 0.0021 24.6 8.1 48 2-49 132-180 (223)
288 2ijq_A Hypothetical protein; s 56.5 51 0.0018 23.5 7.4 53 316-368 43-103 (161)
289 2d2s_A Exocyst complex compone 56.4 66 0.0023 24.7 9.3 89 65-156 23-117 (235)
290 2r9g_A AAA ATPase, central reg 56.1 59 0.002 24.1 10.5 54 142-196 26-84 (204)
291 1wdy_A 2-5A-dependent ribonucl 55.5 63 0.0022 25.1 8.4 15 315-329 226-240 (285)
292 2ijq_A Hypothetical protein; s 55.3 54 0.0018 23.4 8.5 60 22-88 36-103 (161)
293 2fe3_A Peroxide operon regulat 54.4 51 0.0018 22.9 7.1 64 7-77 10-73 (145)
294 3eyy_A Putative iron uptake re 54.2 44 0.0015 23.2 6.3 64 6-77 6-69 (145)
295 3bge_A Predicted ATPase; struc 53.9 65 0.0022 23.9 9.1 21 143-163 20-40 (201)
296 2ion_A PDCD4, programmed cell 52.1 59 0.002 22.9 7.7 26 272-297 11-36 (152)
297 2d2s_A Exocyst complex compone 51.7 79 0.0027 24.3 9.8 29 268-296 89-117 (235)
298 1mzb_A Ferric uptake regulatio 51.4 53 0.0018 22.5 6.3 63 8-77 7-70 (136)
299 3bqo_A Telomeric repeat-bindin 50.7 37 0.0013 25.1 5.3 18 314-331 126-143 (211)
300 3ctd_A Putative ATPase, AAA fa 49.3 80 0.0028 23.6 9.9 22 143-164 48-69 (213)
301 2w57_A Ferric uptake regulatio 49.0 46 0.0016 23.3 5.7 64 7-77 5-69 (150)
302 2xig_A Ferric uptake regulatio 48.1 49 0.0017 23.2 5.8 64 7-77 15-78 (150)
303 4gq2_M Nucleoporin NUP120; bet 47.8 1.3E+02 0.0043 29.1 10.2 48 166-213 898-949 (950)
304 3eiq_C Programmed cell death p 47.5 1.2E+02 0.0041 25.1 13.4 62 239-301 221-284 (358)
305 1wdy_A 2-5A-dependent ribonucl 46.6 84 0.0029 24.3 7.8 49 136-188 8-59 (285)
306 2f6m_A Suppressor protein STP2 46.6 41 0.0014 19.5 4.3 46 62-108 4-49 (65)
307 3pvs_A Replication-associated 45.1 1.5E+02 0.0051 25.5 15.0 54 177-230 267-325 (447)
308 4ets_A Ferric uptake regulatio 43.7 67 0.0023 22.9 6.0 68 252-320 14-84 (162)
309 3eyy_A Putative iron uptake re 43.1 70 0.0024 22.2 5.9 56 86-143 10-65 (145)
310 4ets_A Ferric uptake regulatio 43.0 70 0.0024 22.8 6.0 24 206-229 38-61 (162)
311 2fe3_A Peroxide operon regulat 42.5 82 0.0028 21.8 7.1 58 86-144 13-70 (145)
312 2r9g_A AAA ATPase, central reg 42.1 1E+02 0.0036 22.8 10.3 56 107-163 26-86 (204)
313 1bpo_A Protein (clathrin); cla 41.8 1.7E+02 0.0059 25.3 10.2 111 248-363 342-452 (494)
314 3kea_A K1L; tropism, ANK repea 41.4 1.2E+02 0.004 23.9 7.8 205 25-262 34-245 (285)
315 2zu6_B Programmed cell death p 40.8 1.4E+02 0.0049 24.0 9.6 25 63-87 6-30 (307)
316 2w57_A Ferric uptake regulatio 40.6 91 0.0031 21.8 6.5 58 86-144 8-66 (150)
317 2cwy_A Hypothetical protein TT 40.1 70 0.0024 20.2 5.1 52 29-88 11-67 (94)
318 2zu6_B Programmed cell death p 40.1 1.5E+02 0.005 24.0 14.6 65 308-373 169-235 (307)
319 1mzb_A Ferric uptake regulatio 39.8 88 0.003 21.3 6.3 56 86-142 9-65 (136)
320 3ltm_A Alpha-REP4; protein eng 39.4 1.1E+02 0.0038 22.4 16.9 108 268-387 93-200 (211)
321 2qx5_A Nucleoporin NIC96; mRNA 39.2 2.3E+02 0.0078 26.0 20.9 26 21-47 155-180 (661)
322 3bge_A Predicted ATPase; struc 38.2 1.2E+02 0.0041 22.5 9.2 34 107-140 19-52 (201)
323 2fu4_A Ferric uptake regulatio 37.4 67 0.0023 19.3 6.2 62 8-76 6-68 (83)
324 1ug3_A EIF4GI, eukaryotic prot 36.8 1.7E+02 0.0059 23.9 8.9 25 133-157 14-38 (339)
325 3bqo_A Telomeric repeat-bindin 36.2 22 0.00074 26.2 2.3 47 1-49 95-147 (211)
326 3jxi_A Vanilloid receptor-rela 34.7 41 0.0014 25.9 4.1 54 68-121 10-72 (260)
327 2o03_A Probable zinc uptake re 34.6 90 0.0031 21.1 5.3 45 65-109 15-59 (131)
328 2o03_A Probable zinc uptake re 33.9 74 0.0025 21.5 4.8 41 104-144 19-59 (131)
329 2ion_A PDCD4, programmed cell 33.5 1.2E+02 0.0042 21.2 9.5 64 168-232 12-77 (152)
330 1ya0_A SMG-7 transcript varian 32.7 2.5E+02 0.0087 24.6 10.0 66 32-105 165-230 (497)
331 3ygs_P Procaspase 9; apoptosis 32.6 96 0.0033 19.7 5.9 38 33-80 51-88 (97)
332 3mwm_A ZUR, putative metal upt 32.3 64 0.0022 22.2 4.2 9 114-122 32-40 (139)
333 4fke_A Aminopeptidase N; zinc 32.0 3.5E+02 0.012 26.0 17.4 50 281-333 737-786 (909)
334 3mwm_A ZUR, putative metal upt 31.9 78 0.0027 21.7 4.6 40 206-245 19-58 (139)
335 3ctd_A Putative ATPase, AAA fa 31.8 1.6E+02 0.0055 22.1 9.8 65 98-162 35-107 (213)
336 3pvs_A Replication-associated 31.4 2.5E+02 0.0086 24.1 15.4 53 248-300 268-325 (447)
337 2crb_A Nuclear receptor bindin 31.1 1E+02 0.0034 19.4 4.4 25 342-366 17-41 (97)
338 3ltm_A Alpha-REP4; protein eng 30.7 1.6E+02 0.0054 21.6 17.9 169 59-247 32-200 (211)
339 3hra_A Ankyrin repeat family p 30.5 1.5E+02 0.0052 21.3 7.1 15 70-84 12-26 (201)
340 2cos_A Serine/threonine protei 30.3 47 0.0016 18.3 2.4 38 4-46 10-49 (54)
341 3t8k_A Uncharacterized protein 30.0 1.6E+02 0.0054 21.3 9.1 19 73-91 48-66 (186)
342 1oai_A Nuclear RNA export fact 29.4 49 0.0017 18.7 2.6 25 31-60 32-56 (59)
343 2yru_A Steroid receptor RNA ac 28.6 1.2E+02 0.004 20.3 4.7 42 82-123 48-89 (118)
344 3ph0_C ASCG; type III secretio 28.2 64 0.0022 18.0 2.8 10 29-38 50-59 (61)
345 1k1a_A B-cell lymphoma 3-encod 28.1 1.9E+02 0.0064 21.6 7.9 24 69-92 15-38 (241)
346 3hra_A Ankyrin repeat family p 27.8 1.2E+02 0.0042 21.8 5.6 59 315-374 113-172 (201)
347 4fke_A Aminopeptidase N; zinc 27.3 4.2E+02 0.015 25.4 17.0 157 66-228 692-859 (909)
348 2xig_A Ferric uptake regulatio 26.7 1.6E+02 0.0056 20.4 7.5 60 260-320 17-76 (150)
349 2yru_A Steroid receptor RNA ac 26.5 1.5E+02 0.005 19.8 5.0 43 117-159 48-90 (118)
350 2nsz_A Programmed cell death p 25.7 1.6E+02 0.0054 19.9 10.8 63 169-232 11-75 (129)
351 2rpa_A Katanin P60 ATPase-cont 24.6 70 0.0024 19.4 2.8 26 22-47 15-40 (78)
352 3qye_A TBC1 domain family memb 24.4 2.8E+02 0.0097 22.4 7.7 76 256-331 209-288 (331)
353 3t5v_B Nuclear mRNA export pro 24.2 1.5E+02 0.0051 25.6 5.8 60 308-367 179-247 (455)
354 3jxi_A Vanilloid receptor-rela 23.9 60 0.0021 24.9 3.3 56 102-157 9-73 (260)
355 2p22_A Suppressor protein STP2 22.5 1.2E+02 0.0041 21.9 4.1 47 60-107 111-157 (174)
356 4b4t_O 26S proteasome regulato 22.5 3.4E+02 0.012 22.7 9.5 57 276-332 82-154 (393)
357 1ya0_A SMG-7 transcript varian 22.5 3.9E+02 0.013 23.4 9.9 74 242-317 159-232 (497)
358 3eu9_A Huntingtin-interacting 22.4 1.1E+02 0.0037 22.8 4.5 214 4-232 22-239 (240)
359 3qil_A Clathrin heavy chain 1; 22.3 97 0.0033 20.8 3.3 45 172-219 39-83 (125)
360 2rg8_A Programmed cell death p 22.3 1.7E+02 0.0059 20.8 5.0 21 206-226 16-36 (165)
361 3l6a_A Eukaryotic translation 21.4 3.5E+02 0.012 22.4 13.0 213 99-317 16-245 (364)
362 2p22_A Suppressor protein STP2 21.3 1.4E+02 0.0049 21.5 4.3 52 18-76 110-161 (174)
363 2p1h_A APAF-1, apoptotic prote 21.1 1.6E+02 0.0055 18.3 7.2 60 5-78 26-85 (94)
364 3b7b_A Euchromatic histone-lys 21.0 1.1E+02 0.0038 22.9 4.3 53 207-263 181-235 (237)
365 1uzc_A Hypothetical protein FL 21.0 82 0.0028 18.7 2.6 34 1-35 15-49 (71)
366 3lxu_X Tripeptidyl-peptidase 2 20.1 7E+02 0.024 25.4 10.4 32 247-280 1296-1327(1354)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-38 Score=290.16 Aligned_cols=387 Identities=14% Similarity=0.007 Sum_probs=308.8
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHH
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKE 81 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 81 (405)
+|+.+|+.+... .|+..++..++.+|.+.|++++|+.+|+++.. .+++..+++.++.+|.+.|++++|.+
T Consensus 102 ~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~ 171 (597)
T 2xpi_A 102 CAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--------YNRSSACRYLAAFCLVKLYDWQGALN 171 (597)
T ss_dssp HHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--------GGTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--------cccchhHHHHHHHHHHHHhhHHHHHH
Confidence 577777777754 45667777777778888888888888777654 34667777777777777777777777
Q ss_pred HHHHHHhC---------------CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--------------------
Q 035749 82 LLLQMKDK---------------NINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGV-------------------- 126 (405)
Q Consensus 82 ~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------------- 126 (405)
+|+++... +.+++..+|+.++.+|.+.|++++|.++|+++.+.++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 251 (597)
T 2xpi_A 172 LLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEE 251 (597)
T ss_dssp HHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHH
T ss_pred HHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhH
Confidence 77742211 1223467777777777777777777777777754332
Q ss_pred --------------------------------------------------CccHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 035749 127 --------------------------------------------------QPNVVTFSVIMDELCKNGKMEEASQLLELM 156 (405)
Q Consensus 127 --------------------------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 156 (405)
+++..++..++..|.+.|++++|..+|+++
T Consensus 252 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 331 (597)
T 2xpi_A 252 WDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKI 331 (597)
T ss_dssp HHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 256667777788888888888888888888
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchh
Q 035749 157 IQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVV 236 (405)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 236 (405)
.+.+ +.+..++..++.++...|++++|..+++.+.+.. +.+..++..++..|.+.|++++|.++|+++.+.. +.+..
T Consensus 332 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 408 (597)
T 2xpi_A 332 LEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGP 408 (597)
T ss_dssp HHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHH
Confidence 8765 4567778888888888888888888888887654 5678888999999999999999999999988753 34577
Q ss_pred hHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 035749 237 TYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLC 316 (405)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (405)
++..++.++.+.|++++|..+|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+.. +.+..++..++..|.
T Consensus 409 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 486 (597)
T 2xpi_A 409 AWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAF 486 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 88999999999999999999999998875 5678888999999999999999999999998775 567888999999999
Q ss_pred hcCCHHHHHHHHhhccCC----CcCcc--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCc
Q 035749 317 KSGRLKIAWELFHSLPRG----VLIAD--VVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNE 390 (405)
Q Consensus 317 ~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 390 (405)
+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+ +.+..+|..++.+|.+.|+
T Consensus 487 ~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~ 565 (597)
T 2xpi_A 487 NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKI 565 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCC
Confidence 999999999999988664 44566 7899999999999999999999999998864 4578899999999999999
Q ss_pred hhHHHHHHHHhhhc
Q 035749 391 TSKVVELLHRMDER 404 (405)
Q Consensus 391 ~~~a~~~~~~~~~~ 404 (405)
+++|.+.++++.+.
T Consensus 566 ~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 566 PGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988753
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-36 Score=277.01 Aligned_cols=372 Identities=12% Similarity=0.030 Sum_probs=287.6
Q ss_pred CChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChH
Q 035749 17 PNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVV 96 (405)
Q Consensus 17 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 96 (405)
++...|+.++..+.+.|++++|+.+|+++... .|+..++..++.+|.+.|++++|..+|+++... ++++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~ 151 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--------TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSA 151 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--------CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchh
Confidence 57788999999999999999999999999863 467788999999999999999999999998654 67899
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC---------------CCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 035749 97 TYNSVIRGFCYANDSNEAKRLFIEMMDQ---------------GVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGV 161 (405)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (405)
+++.++.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|.+.|+++.+.+.
T Consensus 152 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 231 (597)
T 2xpi_A 152 CRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA 231 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999953322 2234688999999999999999999999999876541
Q ss_pred ----------------------------------------------------------------------CCCHHHHHHH
Q 035749 162 ----------------------------------------------------------------------RPNAFVYNTL 171 (405)
Q Consensus 162 ----------------------------------------------------------------------~~~~~~~~~l 171 (405)
+++..++..+
T Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l 311 (597)
T 2xpi_A 232 KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCK 311 (597)
T ss_dssp TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHH
T ss_pred hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHH
Confidence 1344555556
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccH
Q 035749 172 MDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQV 251 (405)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 251 (405)
+.+|.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|..+++++.... +.+..++..++..|.+.|++
T Consensus 312 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 389 (597)
T 2xpi_A 312 ADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKI 389 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccH
Confidence 666666666666666666666554 3455566666666666666666666666665432 34566777777778888888
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 035749 252 ERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSL 331 (405)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 331 (405)
++|..+|+++.+.. +.+..++..++.++.+.|++++|.++|+++.... +.+..++..++.+|...|++++|.++|+++
T Consensus 390 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (597)
T 2xpi_A 390 SEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSS 467 (597)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888777653 4456777788888888888888888888877664 556777788888888888888888888887
Q ss_pred cCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHccCchhHHHHHHHHhhh
Q 035749 332 PRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAK----GVAPD--CVAFNTLMLGCIRNNETSKVVELLHRMDE 403 (405)
Q Consensus 332 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 403 (405)
.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+
T Consensus 468 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 468 YALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp HHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 6542 236777888888888888888888888888765 55666 67788888888888888888888887765
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=5.7e-33 Score=239.16 Aligned_cols=372 Identities=15% Similarity=0.065 Sum_probs=301.2
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHH
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAK 80 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (405)
++|++.++.+.+.. |.+...+..+...+...|++++|...++.+++.. |.+..+|..++..+.+.|++++|+
T Consensus 16 ~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-------p~~~~~~~~lg~~~~~~g~~~~A~ 87 (388)
T 1w3b_A 16 EAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-------PLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCchHHHHHHHHHHHHCCCHHHHH
Confidence 36788888887764 4456677778888888899999999998888765 567888899999999999999999
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 035749 81 ELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIG 160 (405)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (405)
..|+++.+.. |.+..+|..++.++...|++++|.+.|+++.+..+. +...+..+...+...|++++|.+.|+++.+..
T Consensus 88 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 165 (388)
T 1w3b_A 88 EHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165 (388)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999888764 456677888888899999999999999888876433 45667778888888899999999998888774
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHH
Q 035749 161 VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNT 240 (405)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (405)
+.+..++..+..++...|++++|...|+++.+.+ +.+...+..+...+...|++++|+..+++..... +.+..++..
T Consensus 166 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 242 (388)
T 1w3b_A 166 -PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGN 242 (388)
T ss_dssp -TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHH
Confidence 5567788888888999999999999999888875 5567788888888889999999999998887753 335677788
Q ss_pred HHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC
Q 035749 241 LFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGR 320 (405)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 320 (405)
+...+...|++++|...++++.+.+ +.++.++..+..++.+.|++++|...++++.+.. +.+..++..++..+...|+
T Consensus 243 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 320 (388)
T 1w3b_A 243 LACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGN 320 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCC
Confidence 8888889999999999999888864 5567788888888888999999999999888775 6778888888889999999
Q ss_pred HHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 035749 321 LKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNN 389 (405)
Q Consensus 321 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 389 (405)
+++|...++++.+. .+.+..++..++.++.+.|++++|...++++.+. .+.+...+..+...+...|
T Consensus 321 ~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 321 IEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHhHHHHHHHcc
Confidence 99999999888775 2335778888888899999999999999988875 2335667777777666554
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=5.4e-33 Score=239.29 Aligned_cols=364 Identities=13% Similarity=0.063 Sum_probs=324.2
Q ss_pred HHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 035749 25 LINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRG 104 (405)
Q Consensus 25 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (405)
+...+.+.|++++|++.++.+.+.. |.+...+..+...+...|++++|...++...+.. |.+..+|..+...
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~ 76 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNV 76 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHH
Confidence 4567789999999999999999875 5667888899999999999999999999988764 6788999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 035749 105 FCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRA 184 (405)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 184 (405)
+.+.|++++|...|+++.+..+ .+..++..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 77 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 154 (388)
T 1w3b_A 77 YKERGQLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEA 154 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 9999999999999999988643 356789999999999999999999999999875 55667788899999999999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHc
Q 035749 185 KELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (405)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (405)
...|+++.+.. +.+..+|..+...+...|++++|+..|+++...+ +.+...+..+...+...|++++|...+.+....
T Consensus 155 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 232 (388)
T 1w3b_A 155 KACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999998875 5578899999999999999999999999999864 345678888999999999999999999999887
Q ss_pred CCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHH
Q 035749 265 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYN 344 (405)
Q Consensus 265 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 344 (405)
. +.+..++..+..++...|++++|...++++.... +.+..++..++.++...|++++|...|+++.+. .+.+..++.
T Consensus 233 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~ 309 (388)
T 1w3b_A 233 S-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLN 309 (388)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHH
T ss_pred C-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHH
Confidence 4 5568889999999999999999999999999875 567888999999999999999999999998875 345788999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhc
Q 035749 345 IMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDER 404 (405)
Q Consensus 345 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 404 (405)
.++..+...|++++|...++++.+. .+.+..++..++.++.+.|++++|...++++.+.
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 310 NLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999986 3556888999999999999999999999998753
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.8e-31 Score=233.07 Aligned_cols=207 Identities=16% Similarity=0.159 Sum_probs=181.8
Q ss_pred HHHHHHHHHHcCCCCCccccccc-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCC-----
Q 035749 37 VALNLFEEMINGNGEFGVVCKPD-AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYAND----- 110 (405)
Q Consensus 37 ~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----- 110 (405)
.+..+.+++.+.+ .... ...++.+|..|++.|++++|+++|++|.+.|++||..+|+.||.+|.+.+.
T Consensus 8 ~~e~L~~~~~~k~------~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~ 81 (501)
T 4g26_A 8 PSENLSRKAKKKA------IQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESS 81 (501)
T ss_dssp ----------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSS
T ss_pred hHHHHHHHHHHhc------ccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhh
Confidence 3445556666555 3333 346888999999999999999999999999999999999999999987654
Q ss_pred ----HHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 035749 111 ----SNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKE 186 (405)
Q Consensus 111 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 186 (405)
+++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+
T Consensus 82 ~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~ 161 (501)
T 4g26_A 82 PNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYE 161 (501)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHH
Confidence 6889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccc
Q 035749 187 LFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIH 249 (405)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 249 (405)
+|++|.+.|+.||..+|+.|+.+|++.|+.++|.+++++|.+.+..|+..||+.++..|...+
T Consensus 162 l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 162 VDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999999999999998887643
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.9e-31 Score=231.77 Aligned_cols=205 Identities=14% Similarity=0.196 Sum_probs=182.2
Q ss_pred HhHHHHHHhhcCCCCChh-HHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCC------
Q 035749 3 AAALFTKLKAFGCEPNVI-TYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGF------ 75 (405)
Q Consensus 3 A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------ 75 (405)
+..+.+.+.+.+..+.+. .++.+|..|++.|++++|+++|++|.+.+ ++|+..+|+.||.+|.+.+.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~G------v~pd~~tyn~Li~~c~~~~~~~~~~~ 82 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNG------VQLSQYHYNVLLYVCSLAEAATESSP 82 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT------CCCCHHHHHHHHHHHTTCCCCSSSSC
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC------CCCCHhHHHHHHHHHHhCCchhhhhh
Confidence 455667777777666554 58899999999999999999999999998 89999999999999987664
Q ss_pred ---hHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHH
Q 035749 76 ---VDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQL 152 (405)
Q Consensus 76 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 152 (405)
+++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++
T Consensus 83 ~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l 162 (501)
T 4g26_A 83 NPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEV 162 (501)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhc
Q 035749 153 LELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKN 213 (405)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (405)
|+.|.+.|+.||..+|+.++.+|++.|+.++|.+++++|.+.+..|+..+|+.++..+...
T Consensus 163 ~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 163 DAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999988763
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.9e-28 Score=219.12 Aligned_cols=371 Identities=10% Similarity=-0.027 Sum_probs=314.3
Q ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHH
Q 035749 19 VITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTY 98 (405)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (405)
...+......+.+.|++++|+..|+++++.+ |++.++..++.++.+.|++++|+..++++.+.+ |.+..++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 76 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--------EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVL 76 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--------ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHH
Confidence 4567888999999999999999999999864 688999999999999999999999999999875 6678899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--------------------------------------------------
Q 035749 99 NSVIRGFCYANDSNEAKRLFIEMMDQGVQP-------------------------------------------------- 128 (405)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------------------------------------------- 128 (405)
..++.++...|++++|...|+++...+...
T Consensus 77 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (514)
T 2gw1_A 77 LRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQE 156 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhcc
Confidence 999999999999999999999998764311
Q ss_pred ----------------------------cHhhHHHHHHHHHc---CCCHHHHHHHHHHHHH-----cCC--------CCC
Q 035749 129 ----------------------------NVVTFSVIMDELCK---NGKMEEASQLLELMIQ-----IGV--------RPN 164 (405)
Q Consensus 129 ----------------------------~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~ 164 (405)
+...+......+.. .|++++|...++++.+ ... +.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (514)
T 2gw1_A 157 NLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKL 236 (514)
T ss_dssp CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHH
T ss_pred CCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHH
Confidence 12233333333443 8999999999999988 311 223
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHH
Q 035749 165 AFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIG 244 (405)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (405)
..++..+...+...|++++|...++++.+.. |+...+..+...+...|++++|...++++.... +.+...+..+...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 313 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQM 313 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHH
Confidence 5677888899999999999999999998875 338889999999999999999999999998864 3466788889999
Q ss_pred HHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHH
Q 035749 245 LFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIA 324 (405)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 324 (405)
+...|++++|...+.++.+.. +.+...+..+...+...|++++|...++.+.... +.+..++..++..+...|++++|
T Consensus 314 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 314 NFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp HHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999999875 5567788899999999999999999999998875 55678899999999999999999
Q ss_pred HHHHhhccCCCcC-cc----HHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHH
Q 035749 325 WELFHSLPRGVLI-AD----VVTYNIMIHALCA---DGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVE 396 (405)
Q Consensus 325 ~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 396 (405)
...++++.+.... ++ ...+..++.++.. .|++++|...++++.+.. +.+...+..+..++.+.|++++|..
T Consensus 392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 470 (514)
T 2gw1_A 392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAIT 470 (514)
T ss_dssp HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999988653211 11 3488999999999 999999999999999863 4477888999999999999999999
Q ss_pred HHHHhhhc
Q 035749 397 LLHRMDER 404 (405)
Q Consensus 397 ~~~~~~~~ 404 (405)
.+++..+.
T Consensus 471 ~~~~a~~~ 478 (514)
T 2gw1_A 471 LFEESADL 478 (514)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988753
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.97 E-value=8e-28 Score=211.32 Aligned_cols=375 Identities=11% Similarity=0.020 Sum_probs=298.9
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHH
Q 035749 5 ALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLL 84 (405)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 84 (405)
..|..+.... +.+...+..++..+.+.|++++|+.+|+++++.. |.+..++..++.++...|++++|+..|+
T Consensus 13 ~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 84 (450)
T 2y4t_A 13 LGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-------PDNYIAYYRRATVFLAMGKSKAALPDLT 84 (450)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3444555443 5567789999999999999999999999999875 5678999999999999999999999999
Q ss_pred HHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccH---hhHHHH------------HHHHHcCCCHHHH
Q 035749 85 QMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNV---VTFSVI------------MDELCKNGKMEEA 149 (405)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a 149 (405)
++.+.+ +.+..++..++.++...|++++|...|+++.+..+. +. ..+..+ ...+...|++++|
T Consensus 85 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 85 KVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999875 567889999999999999999999999999986432 33 454444 4458899999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 035749 150 SQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK 229 (405)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (405)
...++++.+.. +.+..++..++.++...|++++|...++++.+.. +.+..++..++..|...|++++|+..++++...
T Consensus 163 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 163 IAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999875 6688899999999999999999999999998875 567889999999999999999999999999875
Q ss_pred CCCCchhhHHHH------------HHHHHccccHHHHHHHHHHHHHcCCCcc----HHHHHHHHHHHhcCCChHHHHHHH
Q 035749 230 GIKPTVVTYNTL------------FIGLFEIHQVERAFKLFDEMQRHGVAAD----TWAYRTFIDGLCKNGYIVEALELF 293 (405)
Q Consensus 230 ~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~ 293 (405)
. +.+...+..+ +..+...|++++|...+.++.+.. +.+ ...+..+..++.+.|++++|...+
T Consensus 241 ~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 318 (450)
T 2y4t_A 241 D-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICHCFSKDEKPVEAIRVC 318 (450)
T ss_dssp C-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred C-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3 2233344443 788999999999999999998864 223 347788889999999999999999
Q ss_pred HHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHH------------HHcCC-----CH
Q 035749 294 RTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHA------------LCADG-----KM 356 (405)
Q Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g-----~~ 356 (405)
+++.... +.+..++..++.+|...|++++|...++++.+..+ .+...+..+..+ |...| +.
T Consensus 319 ~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~ 396 (450)
T 2y4t_A 319 SEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE-NDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKK 396 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCT
T ss_pred HHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCH
Confidence 9998775 56789999999999999999999999999987532 256666666633 33344 56
Q ss_pred HHHHHHHHH-HHhCC--CCCCH-------HHHHHHHHHHHccCchhHHH
Q 035749 357 DKAHDLFLD-MEAKG--VAPDC-------VAFNTLMLGCIRNNETSKVV 395 (405)
Q Consensus 357 ~~A~~~~~~-~~~~~--~~~~~-------~~~~~l~~~~~~~g~~~~a~ 395 (405)
+++.+.+++ ..+.. ..|+. ..+..+..+|...++.++..
T Consensus 397 ~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 397 QEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp THHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 778888887 44321 11222 36777888888888877654
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.97 E-value=8.1e-27 Score=204.91 Aligned_cols=349 Identities=11% Similarity=0.045 Sum_probs=279.9
Q ss_pred HHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHH
Q 035749 36 IVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAK 115 (405)
Q Consensus 36 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 115 (405)
..+...+..+.... |.+...+..++..+.+.|++++|+.+|+++.+.. +.+..++..++.++...|++++|.
T Consensus 9 ~~~~~~~~~~~~~~-------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 80 (450)
T 2y4t_A 9 SGVDLGTENLYFQS-------MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAAL 80 (450)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccccccccccccc-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHH
Confidence 34455556655553 6778899999999999999999999999998764 668999999999999999999999
Q ss_pred HHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCH---HHHHHH------------HHHHHccCC
Q 035749 116 RLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNA---FVYNTL------------MDGFCLTGR 180 (405)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~ 180 (405)
..|+++.+.++. +..++..++.++...|++++|...|+++.+.. +.+. ..+..+ ...+...|+
T Consensus 81 ~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 81 PDLTKVIQLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGD 158 (450)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999987543 67889999999999999999999999999874 3344 555544 445889999
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHH
Q 035749 181 VNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDE 260 (405)
Q Consensus 181 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 260 (405)
+++|...++++.+.. +.+...+..++.+|.+.|++++|+..|+++.... +.+..++..++..+...|++++|...+++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998875 5678899999999999999999999999998763 44678899999999999999999999999
Q ss_pred HHHcCCCccHHHHHHH------------HHHHhcCCChHHHHHHHHHHHhcCCCcc----HHHHHHHHHHHHhcCCHHHH
Q 035749 261 MQRHGVAADTWAYRTF------------IDGLCKNGYIVEALELFRTLRILKCELD----IRSYSCLIDGLCKSGRLKIA 324 (405)
Q Consensus 261 ~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a 324 (405)
+.... +.+...+..+ +..+...|++++|...++++.... +.+ ...+..++.++.+.|++++|
T Consensus 237 ~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 237 CLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHCCCHHHH
Confidence 98764 4445555444 788999999999999999998864 223 45788899999999999999
Q ss_pred HHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH------------HHccC---
Q 035749 325 WELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLG------------CIRNN--- 389 (405)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g--- 389 (405)
...++++.+.. +.+...|..++.+|...|++++|...++++.+.. +.+...+..+..+ |...|
T Consensus 315 ~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~ 392 (450)
T 2y4t_A 315 IRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKR 392 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSST
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCc
Confidence 99999987642 3368899999999999999999999999999852 3356666666532 33334
Q ss_pred --chhHHHHHHHH
Q 035749 390 --ETSKVVELLHR 400 (405)
Q Consensus 390 --~~~~a~~~~~~ 400 (405)
+.+++.+.+++
T Consensus 393 ~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 393 NAKKQEIIKAYRK 405 (450)
T ss_dssp TCCTTHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 55666777765
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.8e-27 Score=210.63 Aligned_cols=357 Identities=11% Similarity=-0.012 Sum_probs=301.8
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHH
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAK 80 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (405)
++|+..|+.+.+.+ |+..+|..++.++...|++++|+..|+++++.+ |.+..++..++.++...|++++|.
T Consensus 23 ~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~ 93 (514)
T 2gw1_A 23 DDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-------PDYSKVLLRRASANEGLGKFADAM 93 (514)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-------hHHHHHHHHHHHHHHHHhhHHHHH
Confidence 37999999999885 789999999999999999999999999999875 567889999999999999999999
Q ss_pred HHHHHHHhCCCCCC------------------------------------------------------------------
Q 035749 81 ELLLQMKDKNINPD------------------------------------------------------------------ 94 (405)
Q Consensus 81 ~~~~~~~~~~~~~~------------------------------------------------------------------ 94 (405)
..|+++...+ +++
T Consensus 94 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (514)
T 2gw1_A 94 FDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFK 172 (514)
T ss_dssp HHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSC
T ss_pred HHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcC
Confidence 9999987764 211
Q ss_pred -------------hHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CC--C------CccHhhHHHHHHHHHcCCC
Q 035749 95 -------------VVTYNSVIRGFCY---ANDSNEAKRLFIEMMD-----QG--V------QPNVVTFSVIMDELCKNGK 145 (405)
Q Consensus 95 -------------~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~--~------~~~~~~~~~l~~~~~~~~~ 145 (405)
...+......+.. .|++++|...|+++.+ .. + +.+..++..+...+...|+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (514)
T 2gw1_A 173 PELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKND 252 (514)
T ss_dssp CCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCC
Confidence 2333333444443 8999999999999987 31 1 2245678888999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHH
Q 035749 146 MEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSE 225 (405)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 225 (405)
+++|...++++.+.. |+...+..+..++...|++++|...++.+.... +.+...+..+...+...|++++|...+++
T Consensus 253 ~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 329 (514)
T 2gw1_A 253 PLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDK 329 (514)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999999885 338888999999999999999999999998875 55778899999999999999999999999
Q ss_pred HHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCC-cc
Q 035749 226 MLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCE-LD 304 (405)
Q Consensus 226 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 304 (405)
+.... +.+...+..+...+...|++++|...+..+.+.. +.+...+..+...+...|++++|...++++...... ++
T Consensus 330 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 407 (514)
T 2gw1_A 330 AKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG 407 (514)
T ss_dssp HHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccch
Confidence 99864 3356788889999999999999999999998874 556788889999999999999999999998765311 11
Q ss_pred ----HHHHHHHHHHHHh---cCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH
Q 035749 305 ----IRSYSCLIDGLCK---SGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDC 375 (405)
Q Consensus 305 ----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 375 (405)
...+..++.++.. .|++++|...++++.+.. +.+..++..++.++...|++++|...++++.+. .|+.
T Consensus 408 ~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~ 482 (514)
T 2gw1_A 408 IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTM 482 (514)
T ss_dssp CSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSH
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--cccc
Confidence 3488899999999 999999999999987653 336788899999999999999999999999986 4443
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.96 E-value=5e-26 Score=204.53 Aligned_cols=371 Identities=11% Similarity=0.040 Sum_probs=299.5
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHH
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVT 97 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (405)
....|..+...+.+.|++++|+..|+++++.. |.++.++..++.++.+.|++++|++.++++.+.+ |.+..+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 95 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-------PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKA 95 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHH
Confidence 34578889999999999999999999999876 5678999999999999999999999999998875 667889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc-------------------------------------Hh---------
Q 035749 98 YNSVIRGFCYANDSNEAKRLFIEMMDQGVQPN-------------------------------------VV--------- 131 (405)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------------------------------~~--------- 131 (405)
+..+..++...|++++|...|+.+ .....+. ..
T Consensus 96 ~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (537)
T 3fp2_A 96 LLRRASANESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF 174 (537)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhc
Confidence 999999999999999999999643 2111100 00
Q ss_pred ---------------------hHHHHHHHHHc--------CCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH
Q 035749 132 ---------------------TFSVIMDELCK--------NGKMEEASQLLELMIQIGVRPNA-------FVYNTLMDGF 175 (405)
Q Consensus 132 ---------------------~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~ 175 (405)
....+...+.. .|++++|..+++.+.+.. +.+. .++..+...+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 175 DSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp CHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHH
Confidence 11111112111 147889999999998764 3332 3466777888
Q ss_pred HccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHH
Q 035749 176 CLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAF 255 (405)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 255 (405)
...|++++|...++++.... |+...+..+...+...|++++|...++++.... +.+..++..+...+...|++++|.
T Consensus 254 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999999874 558889999999999999999999999998864 346778889999999999999999
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCC
Q 035749 256 KLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGV 335 (405)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 335 (405)
..++++.+.. +.+...+..+..++...|++++|...++++.... +.+...+..++..+...|++++|...|+++.+..
T Consensus 331 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 331 EDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 9999999875 5567788899999999999999999999998875 6677889999999999999999999999876532
Q ss_pred c-----CccHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHH
Q 035749 336 L-----IADVVTYNIMIHALCAD----------GKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHR 400 (405)
Q Consensus 336 ~-----~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 400 (405)
. ......+.....++... |++++|...++++.+. .+.+...+..+..++...|++++|.+.+++
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL-DPRSEQAKIGLAQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 1 11223345556677777 9999999999999986 345778899999999999999999999998
Q ss_pred hhhc
Q 035749 401 MDER 404 (405)
Q Consensus 401 ~~~~ 404 (405)
..+.
T Consensus 488 al~~ 491 (537)
T 3fp2_A 488 SAIL 491 (537)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8653
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.95 E-value=6.4e-24 Score=180.66 Aligned_cols=333 Identities=13% Similarity=0.042 Sum_probs=208.8
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHH
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVT 97 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (405)
++..+..+...+...|++++|+..|+++++.. |.++.++..+..++...|++++|...++++.+.. |.+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 73 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAA 73 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchH
Confidence 45678888899999999999999999998875 5668899999999999999999999999988764 557788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--ccHhhHHHH------------HHHHHcCCCHHHHHHHHHHHHHcCCCC
Q 035749 98 YNSVIRGFCYANDSNEAKRLFIEMMDQGVQ--PNVVTFSVI------------MDELCKNGKMEEASQLLELMIQIGVRP 163 (405)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~ 163 (405)
+..+...+...|++++|...|+++.+..+. .+...+..+ ...+...|++++|...++++.+.. +.
T Consensus 74 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~ 152 (359)
T 3ieg_A 74 RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VW 152 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC
Confidence 899999999999999999999999876330 134444433 344445555555555555555443 33
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHH
Q 035749 164 NAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFI 243 (405)
Q Consensus 164 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 243 (405)
+...+..+..++...|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~ 230 (359)
T 3ieg_A 153 DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQ 230 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHH
Confidence 44445555555555555555555555554442 3344445555555555555555555555544431 111111110000
Q ss_pred HHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccH----HHHHHHHHHHHhcC
Q 035749 244 GLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDI----RSYSCLIDGLCKSG 319 (405)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 319 (405)
+. ...........+...|++++|...++++.... +.+. ..+..++.++...|
T Consensus 231 -----------------~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~ 286 (359)
T 3ieg_A 231 -----------------VK------KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDE 286 (359)
T ss_dssp -----------------HH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTT
T ss_pred -----------------HH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHcc
Confidence 00 00011122555667777777777777776654 2233 23445667777778
Q ss_pred CHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 035749 320 RLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIR 387 (405)
Q Consensus 320 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 387 (405)
++++|...++++.+.. +.+..++..++.++...|++++|...|+++.+.. +.+...+..+..+...
T Consensus 287 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 287 KPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRL 352 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 8888887777776642 2256677777777778888888888888877752 2345555555555443
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.95 E-value=9.5e-24 Score=179.58 Aligned_cols=315 Identities=12% Similarity=0.033 Sum_probs=211.0
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHH
Q 035749 59 DAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMD 138 (405)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (405)
++..+..+...+...|++++|+..|+++.+.. |.+..++..+..++...|++++|...++++.+..+. +...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence 45678888888888999999999998888764 556788888888888889999999998888876432 5677888888
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCC
Q 035749 139 ELCKNGKMEEASQLLELMIQIGVR---PNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKE 215 (405)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 215 (405)
++...|++++|...++++.+.. + .+...+..+..... ...+..+...+...|+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTC
T ss_pred HHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccC
Confidence 8888888888888888888763 2 23334433321100 0011222334444555
Q ss_pred hHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHH
Q 035749 216 IEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRT 295 (405)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 295 (405)
+++|+..++++.... +.+...+..+...+...|++++|...+..+.+.. +.+...+..+...+...|++++|...++.
T Consensus 136 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 136 YTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555555555544432 2233444444455555555555555555554442 33444455555555555555555555555
Q ss_pred HHhcCCCccHHH------------HHHHHHHHHhcCCHHHHHHHHhhccCCCcCccH----HHHHHHHHHHHcCCCHHHH
Q 035749 296 LRILKCELDIRS------------YSCLIDGLCKSGRLKIAWELFHSLPRGVLIADV----VTYNIMIHALCADGKMDKA 359 (405)
Q Consensus 296 ~~~~~~~~~~~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A 359 (405)
+.+.. +.+... ...++..+...|++++|...++++.+.... +. ..+..+..++...|++++|
T Consensus 214 a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 214 CLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHH
Confidence 54432 222222 234477799999999999999998764322 22 3455688899999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhc
Q 035749 360 HDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDER 404 (405)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 404 (405)
...++++.+. .+.+...+..+..++...|++++|...++++.+.
T Consensus 292 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 292 IRICSEVLQM-EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999986 3447889999999999999999999999998764
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=3.9e-24 Score=192.21 Aligned_cols=354 Identities=12% Similarity=0.054 Sum_probs=285.5
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHH
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAK 80 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (405)
++|+..|+.+.+.. |.++.+|..+..++...|++++|++.|+++++.+ |.+..++..++.++...|++++|+
T Consensus 42 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~ 113 (537)
T 3fp2_A 42 NEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-------PDHSKALLRRASANESLGNFTDAM 113 (537)
T ss_dssp C-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CchHHHHHHHHHHHHHcCCHHHHH
Confidence 57899999999875 5678899999999999999999999999999876 567889999999999999999999
Q ss_pred HHHHHHHhCCCC------------------------------------CChH----------------------------
Q 035749 81 ELLLQMKDKNIN------------------------------------PDVV---------------------------- 96 (405)
Q Consensus 81 ~~~~~~~~~~~~------------------------------------~~~~---------------------------- 96 (405)
..|+.+...... |+..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (537)
T 3fp2_A 114 FDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAY 193 (537)
T ss_dssp HHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSH
T ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHH
Confidence 999644211100 0000
Q ss_pred --HHHHHHHHHH--------hcCCHHHHHHHHHHHHHCCCCcc-------HhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 97 --TYNSVIRGFC--------YANDSNEAKRLFIEMMDQGVQPN-------VVTFSVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 97 --~~~~l~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
....+...+. ..|++++|..+++++.+..+. + ..++..+...+...|++++|...++++.+.
T Consensus 194 ~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~ 272 (537)
T 3fp2_A 194 ALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL 272 (537)
T ss_dssp HHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 1111111111 124788999999999876433 2 235667778888999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHH
Q 035749 160 GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYN 239 (405)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (405)
. |+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|+..++++.... +.+...+.
T Consensus 273 ~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 348 (537)
T 3fp2_A 273 H--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYI 348 (537)
T ss_dssp C--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHH
T ss_pred C--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 4 558889999999999999999999999998875 5678899999999999999999999999998864 33567888
Q ss_pred HHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCC-----CccHHHHHHHHHH
Q 035749 240 TLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKC-----ELDIRSYSCLIDG 314 (405)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~ 314 (405)
.+...+...|++++|...+.++.+.. +.+...+..+...+...|++++|...++++..... ......+...+.+
T Consensus 349 ~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~ 427 (537)
T 3fp2_A 349 QLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATI 427 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHH
Confidence 89999999999999999999999875 56677889999999999999999999999876431 1122334556677
Q ss_pred HHhc----------CCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 315 LCKS----------GRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 315 ~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
+... |++++|...|+++.+.. +.+...+..+..++...|++++|...|+++.+.
T Consensus 428 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 428 LARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 7777 99999999999988753 336788999999999999999999999999986
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.94 E-value=1.9e-21 Score=172.16 Aligned_cols=362 Identities=12% Similarity=0.005 Sum_probs=303.9
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHh----cCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHh----cCC
Q 035749 4 AALFTKLKAFGCEPNVITYSTLINGLCR----TGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCK----EGF 75 (405)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 75 (405)
+..++...+. .++.++..+...|.. .+++++|+..|+++.+.+ ++..+..|...|.. .++
T Consensus 27 ~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~~ 94 (490)
T 2xm6_A 27 LEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---------YTPAEYVLGLRYMNGEGVPQD 94 (490)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCC
T ss_pred HHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCC
Confidence 3344444443 477788888888888 899999999999998754 46788889999998 899
Q ss_pred hHHHHHHHHHHHhCCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHc----CCCHH
Q 035749 76 VDKAKELLLQMKDKNINPDVVTYNSVIRGFCY----ANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCK----NGKME 147 (405)
Q Consensus 76 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 147 (405)
+++|...|++..+.+ ++..+..|...|.. .+++++|..+|++..+.| +...+..+...|.. .++++
T Consensus 95 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~ 168 (490)
T 2xm6_A 95 YAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYV 168 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 999999999998875 67888889998988 789999999999998875 56677788888877 78999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhh----cCChHHH
Q 035749 148 EASQLLELMIQIGVRPNAFVYNTLMDGFCL----TGRVNRAKELFVSMESMGCKHNVFSYSILINGYCK----NKEIEGA 219 (405)
Q Consensus 148 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 219 (405)
+|.++|++..+.+ +...+..+...|.. .+++++|..+|++..+.+ ++.++..+...|.. .+++++|
T Consensus 169 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A 242 (490)
T 2xm6_A 169 MAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQS 242 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9999999998875 67788888888887 899999999999998864 56677888888876 7899999
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHHHHHc----cccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcC-----CChHHHH
Q 035749 220 LSLYSEMLSKGIKPTVVTYNTLFIGLFE----IHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKN-----GYIVEAL 290 (405)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~ 290 (405)
..+|++..+.+ +...+..+...+.. .+++++|...|++..+.+ ++.....+...|... +++++|.
T Consensus 243 ~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~ 316 (490)
T 2xm6_A 243 RVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAI 316 (490)
T ss_dssp HHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHH
Confidence 99999998864 45566677777777 899999999999998765 456677778888776 8999999
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHhcC---CHHHHHHHHhhccCCCcCccHHHHHHHHHHHHc----CCCHHHHHHHH
Q 035749 291 ELFRTLRILKCELDIRSYSCLIDGLCKSG---RLKIAWELFHSLPRGVLIADVVTYNIMIHALCA----DGKMDKAHDLF 363 (405)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~ 363 (405)
..+++..+.+ +...+..+...|...| ++++|...|++..+.+ +...+..+...|.. .+++++|...|
T Consensus 317 ~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 317 SWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 9999998865 4567788888888766 7899999999988753 67788889999988 89999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHc----cCchhHHHHHHHHhhhc
Q 035749 364 LDMEAKGVAPDCVAFNTLMLGCIR----NNETSKVVELLHRMDER 404 (405)
Q Consensus 364 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~ 404 (405)
++..+.| ++..+..+...|.. .+++++|..++++..+.
T Consensus 391 ~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 391 RKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 9999875 57788888888888 89999999999988754
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.93 E-value=5.3e-23 Score=172.92 Aligned_cols=289 Identities=15% Similarity=0.072 Sum_probs=143.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHH
Q 035749 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELC 141 (405)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (405)
.+..++..+...|++++|+++++++.+.. +.+...+..++.++...|++++|...++++.+..+ .+...+..+...+.
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 101 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVGCYYL 101 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHH
Confidence 33444444444444444444444443332 22333333344444444444444444444443321 13333444444444
Q ss_pred cCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHH
Q 035749 142 KNG-KMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGAL 220 (405)
Q Consensus 142 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 220 (405)
..| ++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 102 MVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp HSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHH
Confidence 444 4444444444444432 2233444444444444455555555544444432 223334444445555555555555
Q ss_pred HHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcC--------CCccHHHHHHHHHHHhcCCChHHHHHH
Q 035749 221 SLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHG--------VAADTWAYRTFIDGLCKNGYIVEALEL 292 (405)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~ 292 (405)
..++++.... +.+...+..+...+...|++++|...++++.+.. .+....++..+..++...|++++|...
T Consensus 180 ~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 180 RFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 5555554432 2233444555555555555555555555544321 122345666666677777777777777
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHH-HcCCCHH
Q 035749 293 FRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHAL-CADGKMD 357 (405)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 357 (405)
++++.+.. +.+...+..++.++...|++++|...|+++.+.. +.+...+..+..++ ...|+.+
T Consensus 259 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 259 HRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 77766654 4456667777777777777777777777776642 22556666666666 3455443
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.93 E-value=1.6e-22 Score=169.96 Aligned_cols=295 Identities=12% Similarity=0.050 Sum_probs=251.1
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 035749 91 INPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNT 170 (405)
Q Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (405)
.+.+...+..++..+...|++++|.++|+++.+..+. +...+..++.++...|++++|...++++.+.. +.+...+..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 3557778888999999999999999999999887433 66777778889999999999999999999875 567888999
Q ss_pred HHHHHHccC-CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccc
Q 035749 171 LMDGFCLTG-RVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIH 249 (405)
Q Consensus 171 l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 249 (405)
+...+...| ++++|...++++.... +.+...+..+...+...|++++|+..++++.... +.+...+..+...+...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHh
Confidence 999999999 9999999999999875 5567889999999999999999999999998864 334566777899999999
Q ss_pred cHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC--------CCccHHHHHHHHHHHHhcCCH
Q 035749 250 QVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILK--------CELDIRSYSCLIDGLCKSGRL 321 (405)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~ 321 (405)
++++|...++++.+.. +.+...+..+...+...|++++|...++++.... .+....++..++.++...|++
T Consensus 174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 9999999999999875 6678889999999999999999999999987642 134467899999999999999
Q ss_pred HHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HccCchh
Q 035749 322 KIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGC-IRNNETS 392 (405)
Q Consensus 322 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 392 (405)
++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..++ ...|+.+
T Consensus 253 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 253 AEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 99999999987753 3367889999999999999999999999998862 44777888888877 4566544
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.92 E-value=1.9e-20 Score=165.83 Aligned_cols=334 Identities=13% Similarity=0.021 Sum_probs=284.2
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHHHHHHHh----cCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHh----c
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTLINGLCR----TGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCK----E 73 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 73 (405)
+|+..|+...+.| ++.++..+...|.. .+++++|+.+|+++.+.+ ++..+..|...|.. .
T Consensus 61 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 61 QAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---------LPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCC
Confidence 6888888888764 66788889999998 999999999999998754 56778888888888 8
Q ss_pred CChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHc----CCC
Q 035749 74 GFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCY----ANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCK----NGK 145 (405)
Q Consensus 74 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 145 (405)
+++++|+..|++..+.+ ++..+..|...|.. .++.++|.++|++..+.+ +...+..+...|.. .++
T Consensus 129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~ 202 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERN 202 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcC
Confidence 89999999999998875 67888889988887 789999999999998874 67788888888887 899
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhh----cCChH
Q 035749 146 MEEASQLLELMIQIGVRPNAFVYNTLMDGFCL----TGRVNRAKELFVSMESMGCKHNVFSYSILINGYCK----NKEIE 217 (405)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 217 (405)
+++|.++|++..+.+ +...+..+...|.. .+++++|..+|++..+.+ +...+..+...|.. .++++
T Consensus 203 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~ 276 (490)
T 2xm6_A 203 DAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPL 276 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHH
Confidence 999999999998875 56677788888876 789999999999998764 45677778888877 89999
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHHcc-----ccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCC---ChHHH
Q 035749 218 GALSLYSEMLSKGIKPTVVTYNTLFIGLFEI-----HQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNG---YIVEA 289 (405)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a 289 (405)
+|+..|++..+.+ +...+..+...|... +++++|...+.+..+.+ +...+..+...|...| ++++|
T Consensus 277 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A 350 (490)
T 2xm6_A 277 KALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKA 350 (490)
T ss_dssp HHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHH
Confidence 9999999998764 455677788888776 89999999999999875 4556777777777756 88999
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHh----cCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHc----CCCHHHHHH
Q 035749 290 LELFRTLRILKCELDIRSYSCLIDGLCK----SGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCA----DGKMDKAHD 361 (405)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 361 (405)
...+++..+.+ ++..+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|..
T Consensus 351 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 424 (490)
T 2xm6_A 351 VEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWA 424 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 99999998864 67788899999998 899999999999988764 56788889999988 899999999
Q ss_pred HHHHHHhCCC
Q 035749 362 LFLDMEAKGV 371 (405)
Q Consensus 362 ~~~~~~~~~~ 371 (405)
.|++..+.+.
T Consensus 425 ~~~~A~~~~~ 434 (490)
T 2xm6_A 425 WFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHCCC
Confidence 9999998753
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.92 E-value=1.7e-22 Score=172.51 Aligned_cols=288 Identities=11% Similarity=-0.033 Sum_probs=192.5
Q ss_pred CCHHHHHH-HHHHHHHCCCC---ccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 035749 109 NDSNEAKR-LFIEMMDQGVQ---PNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRA 184 (405)
Q Consensus 109 ~~~~~a~~-~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 184 (405)
|++++|.. .|++....... .+...+..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHH
Confidence 45555555 55544332111 123345555556666666666666666665553 44555555666666666666666
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHH-H--------------HHHHHHccc
Q 035749 185 KELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYN-T--------------LFIGLFEIH 249 (405)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~--------------l~~~~~~~~ 249 (405)
...++++.+.. +.+..++..+...+...|++++|...++++...... +...+. . .+..+...|
T Consensus 118 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 118 ISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 66666665553 345555666666666666666666666666554211 111111 0 122333889
Q ss_pred cHHHHHHHHHHHHHcCCCc--cHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 035749 250 QVERAFKLFDEMQRHGVAA--DTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWEL 327 (405)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 327 (405)
++++|...+.++.+.. +. +..++..+...+...|++++|...++++.... +.+..++..++.++...|++++|...
T Consensus 196 ~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 196 LFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999988764 33 57788888999999999999999999988775 56778899999999999999999999
Q ss_pred HhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC----------CHHHHHHHHHHHHccCchhHHHHH
Q 035749 328 FHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAP----------DCVAFNTLMLGCIRNNETSKVVEL 397 (405)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~a~~~ 397 (405)
|+++.+.. +.+..++..++.++...|++++|...++++.+..... ...+|..+..++...|++++|..+
T Consensus 274 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 274 YRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 99887642 3367788899999999999999999999988752111 267889999999999999999988
Q ss_pred HHHhh
Q 035749 398 LHRMD 402 (405)
Q Consensus 398 ~~~~~ 402 (405)
+++..
T Consensus 353 ~~~~l 357 (368)
T 1fch_A 353 DARDL 357 (368)
T ss_dssp HTTCH
T ss_pred HHHHH
Confidence 77543
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.91 E-value=2.5e-20 Score=166.70 Aligned_cols=382 Identities=11% Similarity=0.036 Sum_probs=246.1
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 035749 7 FTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQM 86 (405)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 86 (405)
|+..++.. |-+..+|..++. +.+.|++++|..+|+++++.. |.+...|..++..+.+.|++++|..+|+++
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-------P~~~~~w~~~~~~~~~~~~~~~a~~~~~ra 72 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-------PSSGRFWKLYIEAEIKAKNYDKVEKLFQRC 72 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34444442 446667777777 366778888888888877764 556777777777777778888888888877
Q ss_pred HhCCCCCChHHHHHHHHHH-HhcCCHHHHHH----HHHHHHHC-CCCc-cHhhHHHHHHHHHc---------CCCHHHHH
Q 035749 87 KDKNINPDVVTYNSVIRGF-CYANDSNEAKR----LFIEMMDQ-GVQP-NVVTFSVIMDELCK---------NGKMEEAS 150 (405)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~ 150 (405)
.... |++..|...+... ...|+.++|.+ +|+..+.. |..| +...|...+..... .|+++.|.
T Consensus 73 l~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~ 150 (530)
T 2ooe_A 73 LMKV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVR 150 (530)
T ss_dssp TTTC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHH
T ss_pred HhcC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHH
Confidence 7653 4666666665432 23455555443 55555432 3222 34455555554433 45666777
Q ss_pred HHHHHHHHcCCCCCHHHHH-------------------------------------------------------------
Q 035749 151 QLLELMIQIGVRPNAFVYN------------------------------------------------------------- 169 (405)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~------------------------------------------------------------- 169 (405)
.+|++.++.........|.
T Consensus 151 ~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 230 (530)
T 2ooe_A 151 RVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV 230 (530)
T ss_dssp HHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHH
T ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Confidence 7776666521111112221
Q ss_pred ----HHHHHHHc----cCCH----HHHHHHHHHHHhcCCCCChhhHHHHHHHHhh-------cCChH-------HHHHHH
Q 035749 170 ----TLMDGFCL----TGRV----NRAKELFVSMESMGCKHNVFSYSILINGYCK-------NKEIE-------GALSLY 223 (405)
Q Consensus 170 ----~l~~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~ 223 (405)
..+..... .++. .++..+|+++.... +.++..|..++..+.+ .|+++ +|..++
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 11111110 0111 24455566655542 4456677777777665 68876 888888
Q ss_pred HHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccH-HHHHHHHHHHhcCCChHHHHHHHHHHHhcCCC
Q 035749 224 SEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADT-WAYRTFIDGLCKNGYIVEALELFRTLRILKCE 302 (405)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 302 (405)
++..+.-.+.+...+..++..+.+.|++++|..+|+++++.. +.+. ..+...+..+.+.|++++|..+|+++.+.. +
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~ 387 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-R 387 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-T
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-C
Confidence 888863223356677788888888899999999999888853 2233 467777777888888999999999888753 3
Q ss_pred ccHHHHHHHHHH-HHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CC--CHHHH
Q 035749 303 LDIRSYSCLIDG-LCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGV-AP--DCVAF 378 (405)
Q Consensus 303 ~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~--~~~~~ 378 (405)
.+...+...+.. +...|++++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|+++...+. .| ....|
T Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw 466 (530)
T 2ooe_A 388 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 466 (530)
T ss_dssp CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHH
T ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHH
Confidence 333444333332 335888999999998877642 23578888888888889999999999999887632 22 23477
Q ss_pred HHHHHHHHccCchhHHHHHHHHhhh
Q 035749 379 NTLMLGCIRNNETSKVVELLHRMDE 403 (405)
Q Consensus 379 ~~l~~~~~~~g~~~~a~~~~~~~~~ 403 (405)
...+......|+.+.+..+.+++.+
T Consensus 467 ~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 467 ARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777888999999888887754
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.91 E-value=3.9e-22 Score=170.29 Aligned_cols=309 Identities=12% Similarity=-0.046 Sum_probs=158.9
Q ss_pred hcCchHHHHH-HHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcC
Q 035749 31 RTGHTIVALN-LFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYAN 109 (405)
Q Consensus 31 ~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 109 (405)
..|++++|+. .|+++.+..+.. ...+...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEEN---PLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ---------CHHHHCCCCCCSSC---TTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhhhHHHhcCCCC---cccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3455555555 555544432110 00123344555555555556666666655555543 334555555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 035749 110 DSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFV 189 (405)
Q Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 189 (405)
++++|...|+++.+..+ .+..++..+..++...|++++|...++++.+.. +.+...+..+... ..
T Consensus 113 ~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~~------ 177 (368)
T 1fch_A 113 QELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------AG------ 177 (368)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC--------------------
T ss_pred CHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------hh------
Confidence 55555555555555432 244555555555555555555555555555542 1111111110000 00
Q ss_pred HHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCC-chhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCc
Q 035749 190 SMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP-TVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAA 268 (405)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 268 (405)
. ......+..+... ...|++++|...++++....... +..++..+...+...|++++|...+.++.... +.
T Consensus 178 -~-----~~~~~~~~~~~~~-~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~ 249 (368)
T 1fch_A 178 -G-----AGLGPSKRILGSL-LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PN 249 (368)
T ss_dssp --------------CTTHHH-HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred -h-----hcccHHHHHHHHH-hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cC
Confidence 0 0000000012222 25666666666666666542111 35556666666666677777777776666553 44
Q ss_pred cHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCc----------
Q 035749 269 DTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIA---------- 338 (405)
Q Consensus 269 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------- 338 (405)
+...+..+..++...|++++|...++++.... +.+..++..++.+|...|++++|...|+++.+.....
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 55666666667777777777777777766654 4456666777777777777777777776655421110
Q ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 035749 339 DVVTYNIMIHALCADGKMDKAHDLFLDME 367 (405)
Q Consensus 339 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 367 (405)
...+|..+..++...|++++|..++++..
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 14667777777777777777776665433
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.90 E-value=4.1e-22 Score=169.92 Aligned_cols=265 Identities=11% Similarity=-0.020 Sum_probs=156.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHH
Q 035749 60 AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDE 139 (405)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (405)
...+..++..+.+.|++++|+..|+++.+.. |.+..++..+...+...|++++|+..|+++.+..+ .+..++..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 4456777777777777777777777777654 45667777777777777777777777777776532 256667777777
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCCH----------HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC--ChhhHHHHH
Q 035749 140 LCKNGKMEEASQLLELMIQIGVRPNA----------FVYNTLMDGFCLTGRVNRAKELFVSMESMGCKH--NVFSYSILI 207 (405)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 207 (405)
+...|++++|...++++.+.. +.+. ..+..+...+...|++++|...++++.+.. +. +..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHH
Confidence 777777777777777776652 1111 122233556666666666666666666553 22 455666666
Q ss_pred HHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChH
Q 035749 208 NGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIV 287 (405)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 287 (405)
..+...|++++|+..++++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+..++...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 66666666666666666666542 2344556666666666666666666666665543 334555566666666666666
Q ss_pred HHHHHHHHHHhcCCC-----------ccHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 035749 288 EALELFRTLRILKCE-----------LDIRSYSCLIDGLCKSGRLKIAWELFHS 330 (405)
Q Consensus 288 ~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 330 (405)
+|...++++...... .+..++..+..++...|+.+.+..+.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 666666665543200 0134455555555555555555554443
No 23
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.90 E-value=5.1e-20 Score=162.64 Aligned_cols=371 Identities=11% Similarity=-0.079 Sum_probs=254.0
Q ss_pred CChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCc-c-cccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----C
Q 035749 17 PNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFG-V-VCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK----N 90 (405)
Q Consensus 17 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~ 90 (405)
.....|+.+...+...|++++|++.|+++++...... . ..+....+|..+..+|...|++++|...+++..+. .
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 3456799999999999999999999999875310000 0 01334678999999999999999999999887542 1
Q ss_pred ---CCCChHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCccHhhHHHHHHH---HHcCCCHHHHHHHHHHHHHcCCC
Q 035749 91 ---INPDVVTYNSVIRGFCYA--NDSNEAKRLFIEMMDQGVQPNVVTFSVIMDE---LCKNGKMEEASQLLELMIQIGVR 162 (405)
Q Consensus 91 ---~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~ 162 (405)
......++..+..++... +++++|+..|++.++..+. +...+..+..+ +...++.++|++.+++.++.. +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 112356676666666554 5789999999999887433 45555555544 345677888999999998875 5
Q ss_pred CCHHHHHHHHHHHH----ccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhH
Q 035749 163 PNAFVYNTLMDGFC----LTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTY 238 (405)
Q Consensus 163 ~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (405)
.+..++..+...+. ..+++++|.+.+++..... +.+..++..+...|...|++++|+..++++.+.. +.+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 56666666655444 3467889999999998875 6678889999999999999999999999998863 3345566
Q ss_pred HHHHHHHHcc-------------------ccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 035749 239 NTLFIGLFEI-------------------HQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRIL 299 (405)
Q Consensus 239 ~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 299 (405)
..+..+|... +.++.|...+....+.. +.+...+..+...+...|++++|...|+++...
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 6666555322 34667888888877764 556677888899999999999999999999876
Q ss_pred CCCccHH--HHHHHHH-HHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH
Q 035749 300 KCELDIR--SYSCLID-GLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCV 376 (405)
Q Consensus 300 ~~~~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 376 (405)
...+... .+..+.. .....|++++|+..|++..+. .|+...... ....+.+++++.+.. -+.+..
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~-~p~~~~ 431 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLSK-NGADSE 431 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHH-CC-CTT
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHHh-CCCCHH
Confidence 5333221 2333333 234678999999999988764 344332221 223445566666655 245778
Q ss_pred HHHHHHHHHHccCchhHHHHHHHHhhhc
Q 035749 377 AFNTLMLGCIRNNETSKVVELLHRMDER 404 (405)
Q Consensus 377 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 404 (405)
+|..+..+|...|++++|.+.+++.++.
T Consensus 432 ~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 432 ALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 8999999999999999999999998764
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.89 E-value=3.2e-21 Score=164.43 Aligned_cols=266 Identities=11% Similarity=-0.001 Sum_probs=222.5
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHH
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVT 97 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (405)
+...|..+...+.+.|++++|+..|+++++.. |.+..++..++.++...|++++|+..|+++.+.. +.+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 135 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-------PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKA 135 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 44568899999999999999999999999875 5678899999999999999999999999998874 567899
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhh----------HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC--CH
Q 035749 98 YNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVT----------FSVIMDELCKNGKMEEASQLLELMIQIGVRP--NA 165 (405)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~ 165 (405)
+..+..++...|++++|...|+++.+..+. +... +..+...+...|++++|...++++.+.. +. +.
T Consensus 136 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 213 (365)
T 4eqf_A 136 LMALAVSYTNTSHQQDACEALKNWIKQNPK-YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDP 213 (365)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhCcc-chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCH
Confidence 999999999999999999999999875322 2222 2345788899999999999999999885 33 68
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHH
Q 035749 166 FVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGL 245 (405)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (405)
.++..+..++...|++++|...++++.+.. +.+..++..+..+|...|++++|+..|+++.+.. +.+..++..+..++
T Consensus 214 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 214 DLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISC 291 (365)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHH
Confidence 899999999999999999999999998875 5678899999999999999999999999998863 34577889999999
Q ss_pred HccccHHHHHHHHHHHHHcCCC-----------ccHHHHHHHHHHHhcCCChHHHHHHHHH
Q 035749 246 FEIHQVERAFKLFDEMQRHGVA-----------ADTWAYRTFIDGLCKNGYIVEALELFRT 295 (405)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 295 (405)
...|++++|...++++.+.... .+...+..+..++...|+.+.+..+..+
T Consensus 292 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 292 INLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999999998864211 1356788888999999999988877654
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.89 E-value=9.6e-21 Score=158.87 Aligned_cols=264 Identities=11% Similarity=-0.069 Sum_probs=170.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhh
Q 035749 133 FSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCK 212 (405)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (405)
+..+...+...|++++|..+++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+...+..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 3334444444444444444444444432 2334444444444444455555555554444432 2334444444445555
Q ss_pred cCChHHHHHHHHHHHhCCCCCchhhHHH-------------H-HH-HHHccccHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 035749 213 NKEIEGALSLYSEMLSKGIKPTVVTYNT-------------L-FI-GLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFI 277 (405)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------------l-~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 277 (405)
.|++++|...++++.... +.+...+.. + .. .+...|++++|...+.++.+.. +.+...+..+.
T Consensus 102 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp TTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 555555555555544431 111111111 1 22 3677888889999888888764 55677888888
Q ss_pred HHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHH
Q 035749 278 DGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMD 357 (405)
Q Consensus 278 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 357 (405)
..+...|++++|...++++.... +.+..++..++..+...|++++|...++++.+.. +.+...+..++.++...|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHH
Confidence 88888999999999998888765 5567888888889999999999999998877642 235778888888999999999
Q ss_pred HHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHccCchhHHHHHHHHhh
Q 035749 358 KAHDLFLDMEAKGVAP-----------DCVAFNTLMLGCIRNNETSKVVELLHRMD 402 (405)
Q Consensus 358 ~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 402 (405)
+|...++++.+..... +...+..+..++...|++++|..++++..
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999888752211 36778888889999999999988887654
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.89 E-value=2.1e-20 Score=156.77 Aligned_cols=268 Identities=7% Similarity=-0.082 Sum_probs=188.6
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHH
Q 035749 59 DAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMD 138 (405)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (405)
+...+..+...+...|++++|..+|+++.+.. +.+..++..+..++...|++++|...++++.+..+ .+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHH
Confidence 44567788888999999999999999988764 55788888899999999999999999999887643 36778888888
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH--------------HH-HHHccCCHHHHHHHHHHHHhcCCCCChhhH
Q 035749 139 ELCKNGKMEEASQLLELMIQIGVRPNAFVYNTL--------------MD-GFCLTGRVNRAKELFVSMESMGCKHNVFSY 203 (405)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 203 (405)
.+...|++++|...++++.+.. +.+...+..+ .. .+...|++++|...++++.+.. +.+...+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence 9999999999999999988764 3333333333 22 3566677777777777776664 4456667
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcC
Q 035749 204 SILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKN 283 (405)
Q Consensus 204 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 283 (405)
..+...+...|++++|...++++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+..++...
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh
Confidence 777777777777777777777776652 2345566666677777777777777777766653 44556666666777777
Q ss_pred CChHHHHHHHHHHHhcCCCc-----------cHHHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 035749 284 GYIVEALELFRTLRILKCEL-----------DIRSYSCLIDGLCKSGRLKIAWELFHSLP 332 (405)
Q Consensus 284 ~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 332 (405)
|++++|...++++....... +..++..++.++...|++++|..++++..
T Consensus 254 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 77777777777666543111 45566666666667777777766666544
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.87 E-value=2.7e-19 Score=146.37 Aligned_cols=278 Identities=9% Similarity=0.015 Sum_probs=199.9
Q ss_pred HHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 035749 26 INGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGF 105 (405)
Q Consensus 26 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 105 (405)
++.....|++..|+..++...... ..+.......+.++|...|+++.|+..++. . .+|+..++..+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~------p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~ 75 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSS------PERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYL 75 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCS------HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCC------chhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHH
Confidence 456677899999999888765543 111234566778888999999888876644 2 356777888888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCc-cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 035749 106 CYANDSNEAKRLFIEMMDQGVQP-NVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRA 184 (405)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 184 (405)
...++.++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++.++.+.|++++|
T Consensus 76 ~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A 149 (291)
T 3mkr_A 76 ASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLA 149 (291)
T ss_dssp HCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHH
Confidence 88888999999999888765433 456667777888888999999988876 45777888888888888999999
Q ss_pred HHHHHHHHhcCCCCChhhH---HHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHH
Q 035749 185 KELFVSMESMGCKHNVFSY---SILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEM 261 (405)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 261 (405)
.+.++++.+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++...|++++|...++++
T Consensus 150 ~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 150 RKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEA 226 (291)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99888888764 332211 22334444567888888888888876 3456777888888888888888888888888
Q ss_pred HHcCCCccHHHHHHHHHHHhcCCChHH-HHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 035749 262 QRHGVAADTWAYRTFIDGLCKNGYIVE-ALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELF 328 (405)
Q Consensus 262 ~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 328 (405)
++.. +.++.++..++..+...|+.++ +.++++++.+.. |.++.+ .....+.+.++++..-|
T Consensus 227 l~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~-P~~~~~----~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 227 LDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH-RSHPFI----KEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CCChHH----HHHHHHHHHHHHHHHHc
Confidence 8764 5567778888888888888765 567888877664 333332 23344555555554433
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.87 E-value=4.7e-21 Score=160.02 Aligned_cols=279 Identities=11% Similarity=0.058 Sum_probs=116.7
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHH
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAK 80 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (405)
++|.++++++ +++.+|..++.++.+.|++++|++.|.+. ++...|..++..+...|++++|+
T Consensus 20 d~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 20 DRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 3455556555 23347888888888888888888888543 45567888888888888888888
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 035749 81 ELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIG 160 (405)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (405)
..++..++. .+++.+.+.++.+|.+.|++.++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 877766654 3456777788888888888888777764 356678888888888888888888888865
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHH
Q 035749 161 VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNT 240 (405)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (405)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. ..|+ ....
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad--~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHH--HHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHh--hHHH
Confidence 36778888888888888888888877 267788888888888888888855444322 2333 3445
Q ss_pred HHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHh-cCCCc------cHHHHHHHHH
Q 035749 241 LFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRI-LKCEL------DIRSYSCLID 313 (405)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~------~~~~~~~l~~ 313 (405)
++..|.+.|.+++|..+++..+... +.....++.+..+|++- .+++..+.++.... .+++| +...|..+..
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 7777888888888888888877654 45566666666666553 23333333332221 12222 3445777777
Q ss_pred HHHhcCCHHHHHHHH
Q 035749 314 GLCKSGRLKIAWELF 328 (405)
Q Consensus 314 ~~~~~~~~~~a~~~~ 328 (405)
.|...++++.|....
T Consensus 291 ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 291 LYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHhhchHHHHHHHH
Confidence 888888888776654
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.86 E-value=2.3e-19 Score=146.84 Aligned_cols=251 Identities=9% Similarity=0.032 Sum_probs=120.0
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHH
Q 035749 70 LCKEGFVDKAKELLLQMKDKNINPD--VVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKME 147 (405)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 147 (405)
....|++..|+..++..... .|+ ......+.++|...|+++.|+..++. ..+|+..++..+...+...++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 33455566665555544332 122 12334445555555555555544432 12334445555555555555555
Q ss_pred HHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHH
Q 035749 148 EASQLLELMIQIGV-RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEM 226 (405)
Q Consensus 148 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 226 (405)
+|++.++++...+. +.+...+..+..++...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 55555555554432 22334444444555555555555555544 234445555555555555555555555555
Q ss_pred HhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHH
Q 035749 227 LSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIR 306 (405)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 306 (405)
.+.. |+.. ...+.. ..+..+...|++++|..+|+++.... |.+..
T Consensus 157 ~~~~--p~~~-~~~l~~-------------------------------a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~ 201 (291)
T 3mkr_A 157 QDQD--EDAT-LTQLAT-------------------------------AWVSLAAGGEKLQDAYYIFQEMADKC-SPTLL 201 (291)
T ss_dssp HHHC--TTCH-HHHHHH-------------------------------HHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHH
T ss_pred HhhC--cCcH-HHHHHH-------------------------------HHHHHHhCchHHHHHHHHHHHHHHhC-CCcHH
Confidence 4432 2211 111111 11122223355555555555555442 44555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHH-HHHHHHHHHh
Q 035749 307 SYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDK-AHDLFLDMEA 368 (405)
Q Consensus 307 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~ 368 (405)
.++.++.++...|++++|...|+++.+.. +.+..++..++..+...|+.++ +.++++++.+
T Consensus 202 ~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 202 LLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 55555555555555555555555544431 1244455555555555555543 3455555554
No 30
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=1.5e-17 Score=148.79 Aligned_cols=354 Identities=10% Similarity=-0.009 Sum_probs=258.2
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHH-HhcCChHHHH
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGL-CKEGFVDKAK 80 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~ 80 (405)
+|+.+|+.+++.. |.+...|..++..+.+.|++++|..+|+++++.. |+...|...+... ...|+.+.|.
T Consensus 30 ~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--------p~~~lw~~~~~~~~~~~~~~~~a~ 100 (530)
T 2ooe_A 30 KARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--------LHIDLWKCYLSYVRETKGKLPSYK 100 (530)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--------CCHHHHHHHHHHHHHHTTTSTTHH
T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CChHHHHHHHHHHHHHccchhhHH
Confidence 6889999999873 5677889999999999999999999999999864 4677777777533 3457777665
Q ss_pred H----HHHHHHhC-CCC-CChHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCccHhhHHHHHH-------
Q 035749 81 E----LLLQMKDK-NIN-PDVVTYNSVIRGFCY---------ANDSNEAKRLFIEMMDQGVQPNVVTFSVIMD------- 138 (405)
Q Consensus 81 ~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~------- 138 (405)
+ +|++.... |.. ++...|...+..... .|+++.|..+|++.++....+....|.....
T Consensus 101 ~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~ 180 (530)
T 2ooe_A 101 EKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI 180 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch
Confidence 5 66665542 332 356677776665544 6778888888888776311111122221111
Q ss_pred ----------------------------------------------------------HHHc----CCCH----HHHHHH
Q 035749 139 ----------------------------------------------------------ELCK----NGKM----EEASQL 152 (405)
Q Consensus 139 ----------------------------------------------------------~~~~----~~~~----~~a~~~ 152 (405)
.... .++. +.+..+
T Consensus 181 ~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~ 260 (530)
T 2ooe_A 181 HLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFA 260 (530)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHH
Confidence 0000 0111 244556
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHc-------cCCHH-------HHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHH
Q 035749 153 LELMIQIGVRPNAFVYNTLMDGFCL-------TGRVN-------RAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEG 218 (405)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (405)
|++++... +.+...|..++..+.. .|+++ +|..++++..+.-.|.+...|..++..+.+.|++++
T Consensus 261 y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~ 339 (530)
T 2ooe_A 261 YEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEK 339 (530)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHH
Confidence 66666553 4567778777777765 78887 899999999863235578899999999999999999
Q ss_pred HHHHHHHHHhCCCCCc-h-hhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHH-HhcCCChHHHHHHHHH
Q 035749 219 ALSLYSEMLSKGIKPT-V-VTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDG-LCKNGYIVEALELFRT 295 (405)
Q Consensus 219 a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~ 295 (405)
|..+|+++++. .|+ . ..|...+..+.+.|++++|..+|.+..+.. +.+...+...+.. +...|+.++|..+|+.
T Consensus 340 A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~ 416 (530)
T 2ooe_A 340 VHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFEL 416 (530)
T ss_dssp HHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 99999999986 443 2 478888888889999999999999998763 2333333332222 3468999999999999
Q ss_pred HHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCc-Cc--cHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 296 LRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVL-IA--DVVTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 296 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
..+.. +.+...+..++..+...|+.++|..+|++....+. .| ....|...+......|+.+.+..+++++.+.
T Consensus 417 al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 417 GLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 98775 56788999999999999999999999999876532 22 2457888888888899999999999999875
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.84 E-value=2e-19 Score=150.26 Aligned_cols=282 Identities=13% Similarity=0.136 Sum_probs=138.6
Q ss_pred hcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCC
Q 035749 31 RTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYAND 110 (405)
Q Consensus 31 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 110 (405)
+.|++++|.++++++. ++.+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|+
T Consensus 15 ~~~~ld~A~~fae~~~------------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~ 76 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGN 76 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCC
Confidence 6788999999999982 2359999999999999999999999652 477799999999999999
Q ss_pred HHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 035749 111 SNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVS 190 (405)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 190 (405)
+++|+..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|++++|..+|..
T Consensus 77 ~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~ 147 (449)
T 1b89_A 77 WEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNN 147 (449)
T ss_dssp ----------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999988877764 4457788899999999999999998885 46777999999999999999999999997
Q ss_pred HHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccH
Q 035749 191 MESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADT 270 (405)
Q Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 270 (405)
+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ..++
T Consensus 148 a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~a 207 (449)
T 1b89_A 148 V---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHA 207 (449)
T ss_dssp T---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCH
T ss_pred h---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCH
Confidence 6 47899999999999999999999998 27789999999999999999996655432 2344
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc--CCHHHHHHHHhhccCCCcCc------cHHH
Q 035749 271 WAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKS--GRLKIAWELFHSLPRGVLIA------DVVT 342 (405)
Q Consensus 271 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~ 342 (405)
.....++..|.+.|.+++|..+++...... +.....|+.+..+|++- ++..+.++.|..-.. ++| +...
T Consensus 208 d~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~in--i~k~~~~~~~~~~ 284 (449)
T 1b89_A 208 DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHL 284 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSC--HHHHHHHHHTTTC
T ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc--CcHHHHHHHHHHH
Confidence 446678899999999999999999998776 67788899998888865 234445555543322 333 3567
Q ss_pred HHHHHHHHHcCCCHHHHHHH
Q 035749 343 YNIMIHALCADGKMDKAHDL 362 (405)
Q Consensus 343 ~~~l~~~~~~~g~~~~A~~~ 362 (405)
|..+...|...++++.|...
T Consensus 285 w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 285 WAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhchHHHHHHH
Confidence 99999999999999988763
No 32
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.84 E-value=1.2e-18 Score=136.36 Aligned_cols=200 Identities=13% Similarity=0.034 Sum_probs=148.1
Q ss_pred CCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 035749 16 EPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDV 95 (405)
Q Consensus 16 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 95 (405)
|+++..+..+...+.+.|++++|+..|+++++.+ |.++..+..+..++.+.|++++|+..+++..+.. |.+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~ 73 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-------PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYL 73 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcH
Confidence 5677888889999999999999999999999876 5678889999999999999999999999988875 5577
Q ss_pred HHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC
Q 035749 96 VTYNSVIRGFCYA-----------NDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPN 164 (405)
Q Consensus 96 ~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 164 (405)
..+..+..++... |++++|+..|++.++..+. +...+..+..++...|++++|+..++++++.. .+
T Consensus 74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~ 150 (217)
T 2pl2_A 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DT 150 (217)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cc
Confidence 8888888888888 8888888888887776433 56677777777888888888888888887776 56
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHH
Q 035749 165 AFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEML 227 (405)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 227 (405)
...+..+..++...|++++|...|+++.+.. |.+...+..+...+...|++++|+..+++..
T Consensus 151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 151 PEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 7777777778888888888888888877764 4566677777777777888888877776654
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=6.6e-18 Score=149.09 Aligned_cols=353 Identities=11% Similarity=-0.037 Sum_probs=237.7
Q ss_pred ChHhHHHHHHhhc--------CCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCccc-ccccHHHHHHHHHHHH
Q 035749 1 MEAAALFTKLKAF--------GCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVV-CKPDAVIYTTIIDGLC 71 (405)
Q Consensus 1 ~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 71 (405)
++|++.|++..+. .-+....+|+.+..+|...|++++|...++++++........ ....+.++..+..++.
T Consensus 68 ~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~ 147 (472)
T 4g1t_A 68 EAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRL 147 (472)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHH
Confidence 3567777665432 112345689999999999999999999999987643211110 1224567777766666
Q ss_pred hc--CChHHHHHHHHHHHhCCCCCChHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHc----
Q 035749 72 KE--GFVDKAKELLLQMKDKNINPDVVTYNSVIRGF---CYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCK---- 142 (405)
Q Consensus 72 ~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 142 (405)
.. +++++|++.|++..+.. |.++..+..+..++ ...++.++|++.+++.++..+. +...+..+...+..
T Consensus 148 ~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~l~~~~~~~~~~ 225 (472)
T 4g1t_A 148 KCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLALKLHKMREE 225 (472)
T ss_dssp HHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHHHHHHHHHCC--
T ss_pred HHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHHHHHHHHHHHhh
Confidence 54 56999999999998874 44666666665553 3557778999999998876433 55566555555443
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhc---------
Q 035749 143 NGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKN--------- 213 (405)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 213 (405)
.+++++|.+.+++..... +.+..++..+...+...|++++|...++++.+.. |.+..++..+...|...
T Consensus 226 ~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~ 303 (472)
T 4g1t_A 226 GEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRE 303 (472)
T ss_dssp ----CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHH
Confidence 467889999999998875 6678889999999999999999999999998875 55667777776665432
Q ss_pred ----------CChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHH--HHHHHHH-HH
Q 035749 214 ----------KEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTW--AYRTFID-GL 280 (405)
Q Consensus 214 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~ 280 (405)
+.++.|...+++..... +.+...+..+...+...|++++|...|++.+.....+... .+..+.. ..
T Consensus 304 ~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~ 382 (472)
T 4g1t_A 304 NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQL 382 (472)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 23567888888877753 3456678889999999999999999999998875333221 2222222 34
Q ss_pred hcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHH
Q 035749 281 CKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAH 360 (405)
Q Consensus 281 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 360 (405)
...|++++|+..+++..+.. |+...... ....+..+++...+.. +.+..+|..++.+|...|++++|+
T Consensus 383 ~~~~~~~~Ai~~y~kal~i~--~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~ 450 (472)
T 4g1t_A 383 YQMKCEDKAIHHFIEGVKIN--QKSREKEK---------MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQAD 450 (472)
T ss_dssp HTSSCHHHHHHHHHHHHHSC--CCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC---
T ss_pred HHCCCHHHHHHHHHHHHhcC--cccHHHHH---------HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 57899999999999998764 33222211 2233444555544432 346788999999999999999999
Q ss_pred HHHHHHHhCC
Q 035749 361 DLFLDMEAKG 370 (405)
Q Consensus 361 ~~~~~~~~~~ 370 (405)
+.|+++++.+
T Consensus 451 ~~y~kALe~~ 460 (472)
T 4g1t_A 451 EDSERGLESG 460 (472)
T ss_dssp ----------
T ss_pred HHHHHHHhcC
Confidence 9999999864
No 34
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.83 E-value=4.9e-18 Score=148.05 Aligned_cols=347 Identities=13% Similarity=0.046 Sum_probs=228.2
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCCh---HHHHHHHHHHHhCCCCCChHHHHH
Q 035749 24 TLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFV---DKAKELLLQMKDKNINPDVVTYNS 100 (405)
Q Consensus 24 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ 100 (405)
.+...+.+.|++++|+++|+++.+.+ ++..+..+...+...|+. ++|+..|++..+. ++..+..
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---------~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~ 74 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---------YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQAR 74 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---------CCTGGGTCC--------------------------------CHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHH
Confidence 36777889999999999999998754 344556677777778888 8999999988854 5666777
Q ss_pred HHHHHHhcC-----CHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCH---HHHHHHHHHHHHcCCCCCHHHHHHHH
Q 035749 101 VIRGFCYAN-----DSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKM---EEASQLLELMIQIGVRPNAFVYNTLM 172 (405)
Q Consensus 101 l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~ 172 (405)
|...+...+ ++++|+.+|++..+.|.. ..+..+...|...+.. .++.+.+......| +......+.
T Consensus 75 Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg 148 (452)
T 3e4b_A 75 LGRLLAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQV 148 (452)
T ss_dssp HHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHH
T ss_pred HHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 777555554 788999999999987643 3666777777765543 34555555555554 345566677
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcC---ChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHcc-
Q 035749 173 DGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNK---EIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEI- 248 (405)
Q Consensus 173 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 248 (405)
..|...+.++++......+.......++..+..+...|...| +.++|+..|++..+.| +++...+..+...|...
T Consensus 149 ~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~ 227 (452)
T 3e4b_A 149 LLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDAT 227 (452)
T ss_dssp HHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGG
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCC
Confidence 777777755444444333322211234447888888888888 8899999999988876 34555446677777655
Q ss_pred ---ccHHHHHHHHHHHHHcCCCccHHHHHHHHHH-H--hcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC---
Q 035749 249 ---HQVERAFKLFDEMQRHGVAADTWAYRTFIDG-L--CKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSG--- 319 (405)
Q Consensus 249 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 319 (405)
+++++|...|++.. . .++..+..+... + ...+++++|...|++..+.+ +...+..+...|. .|
T Consensus 228 ~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~ 299 (452)
T 3e4b_A 228 LGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWV 299 (452)
T ss_dssp GSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSS
T ss_pred CCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCC
Confidence 68999999999887 3 355566666665 4 46789999999999988765 6667777888777 45
Q ss_pred --CHHHHHHHHhhccCCCcCccHHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cC
Q 035749 320 --RLKIAWELFHSLPRGVLIADVVTYNIMIHALCA----DGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIR----NN 389 (405)
Q Consensus 320 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 389 (405)
++++|...|++.. . .+...+..|...|.. ..++++|...|++..+.|. ......|...|.. ..
T Consensus 300 ~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~ 372 (452)
T 3e4b_A 300 PADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKP 372 (452)
T ss_dssp CCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCC
T ss_pred CCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCC
Confidence 8999999999887 3 366777777777766 4489999999999988763 3345566666653 45
Q ss_pred chhHHHHHHHHhhhcC
Q 035749 390 ETSKVVELLHRMDERN 405 (405)
Q Consensus 390 ~~~~a~~~~~~~~~~~ 405 (405)
+.++|..+++...+.|
T Consensus 373 d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 373 DPLNAYVFSQLAKAQD 388 (452)
T ss_dssp CHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHCC
Confidence 7888888888876654
No 35
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.82 E-value=4.2e-18 Score=148.51 Aligned_cols=366 Identities=11% Similarity=0.002 Sum_probs=244.6
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCch---HHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcC---
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHT---IVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEG--- 74 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 74 (405)
++|++.|+...+.| ++.++..+...|...|++ ++|+.+|+++.+. ++..+..+...+...+
T Consensus 20 ~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----------~~~A~~~Lg~~~~~~~~~~ 86 (452)
T 3e4b_A 20 VTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----------SPRAQARLGRLLAAKPGAT 86 (452)
T ss_dssp HHHHHHHHHHHHHT---CCTGGGTCC--------------------------------------CHHHHHHHHHTC--CC
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----------CHHHHHHHHHHHHhCCCCC
Confidence 36889999998876 444566677777778888 8999999999752 5566777777566555
Q ss_pred --ChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHH
Q 035749 75 --FVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSN---EAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEA 149 (405)
Q Consensus 75 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 149 (405)
++++|+..|++..+.| ++..+..|...|...+... ++.+.+......| +......+...|...+.++++
T Consensus 87 ~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 87 EAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp HHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGG
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccC
Confidence 7889999999999876 3347777888887766543 4555555555444 345666777788777754444
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhc----CChHHHHHH
Q 035749 150 SQLLELMIQIGVRPNAFVYNTLMDGFCLTG---RVNRAKELFVSMESMGCKHNVFSYSILINGYCKN----KEIEGALSL 222 (405)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~ 222 (405)
......+.+.-...++..+..+..+|...| +.++|+..|++..+.| +++...+..+...|... +++++|+..
T Consensus 161 ~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~ 239 (452)
T 3e4b_A 161 LDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQAL 239 (452)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 443332222212233448888899999999 9999999999999887 56666667788888665 799999999
Q ss_pred HHHHHhCCCCCchhhHHHHHHH-H--HccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCC-----ChHHHHHHHH
Q 035749 223 YSEMLSKGIKPTVVTYNTLFIG-L--FEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNG-----YIVEALELFR 294 (405)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~ 294 (405)
|++.. .| +...+..+... + ...+++++|...|++..+.| +......+...|. .| ++++|...|+
T Consensus 240 ~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 240 LEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 99988 43 55566667666 4 56899999999999999876 6667777777776 45 9999999999
Q ss_pred HHHhcCCCccHHHHHHHHHHHHh----cCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHc----CCCHHHHHHHHHHH
Q 035749 295 TLRILKCELDIRSYSCLIDGLCK----SGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCA----DGKMDKAHDLFLDM 366 (405)
Q Consensus 295 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 366 (405)
+.. +-++.....+...|.. ..++++|...|++..+.| +......|...|.. .+++++|...|+..
T Consensus 312 ~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 312 KAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp TTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred HHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 888 3466778888888876 448999999999998865 34556677777764 46899999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhh
Q 035749 367 EAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMD 402 (405)
Q Consensus 367 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 402 (405)
.+.|.+ +.......+......++..+|..+.++..
T Consensus 385 ~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 385 KAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 998743 22222222333334456777777776544
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.3e-17 Score=134.62 Aligned_cols=226 Identities=14% Similarity=0.049 Sum_probs=159.1
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC--CC----hhhH
Q 035749 130 VVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCK--HN----VFSY 203 (405)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 203 (405)
...+..+...+...|++++|...++++.+.. .+..++..+..++...|++++|...++++.+.... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3445556666666666666666666666665 55666666666666777777777776666554211 11 4566
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcC
Q 035749 204 SILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKN 283 (405)
Q Consensus 204 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 283 (405)
..+...+...|++++|...++++... .|+. ..+...|++++|...+..+.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 67777777777777777777777764 2332 34556677888888888877753 44566777777888888
Q ss_pred CChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHH
Q 035749 284 GYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLF 363 (405)
Q Consensus 284 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 363 (405)
|++++|...++++.... +.+..++..++.++...|++++|...++++.+.. +.+...|..+..++...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 88888888888887765 5567778888888888888888888888877642 235677888888888888888888888
Q ss_pred HHHHhC
Q 035749 364 LDMEAK 369 (405)
Q Consensus 364 ~~~~~~ 369 (405)
+++.+.
T Consensus 231 ~~a~~~ 236 (258)
T 3uq3_A 231 DAARTK 236 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888764
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.6e-17 Score=134.09 Aligned_cols=226 Identities=13% Similarity=0.076 Sum_probs=147.4
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--c----Hhh
Q 035749 59 DAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQP--N----VVT 132 (405)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~ 132 (405)
....+..+...+...|++++|+..|+++.+.. .+..++..+..++...|++++|...+++..+..... + ...
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 45677788888888888888888888887765 677788888888888888888888888877642111 1 466
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhh
Q 035749 133 FSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCK 212 (405)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (405)
+..+..++...|++++|...++++.+.. |+. ..+...|++++|...++.+.... +.+...+..+...+..
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence 6777777777777777777777777653 332 23444566677777777666553 3345556666666666
Q ss_pred cCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHH
Q 035749 213 NKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALEL 292 (405)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 292 (405)
.|++++|...++++.... +.+...+..+...+...|++++|...+..+.+.. +.+...+..+..++...|++++|...
T Consensus 152 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 666666666666666542 2244555556666666666666666666665543 33455555555666666666666666
Q ss_pred HHHHHh
Q 035749 293 FRTLRI 298 (405)
Q Consensus 293 ~~~~~~ 298 (405)
++++.+
T Consensus 230 ~~~a~~ 235 (258)
T 3uq3_A 230 LDAART 235 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655544
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.81 E-value=1.6e-17 Score=130.08 Aligned_cols=208 Identities=13% Similarity=-0.025 Sum_probs=82.7
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHH
Q 035749 58 PDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIM 137 (405)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 137 (405)
+++..+..+...+.+.|++++|+..|++..+.. |.+...+..+..++.+.|++++|+..|++.++..+. +...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 344444555555555555555555555544432 334444445555555555555555555554443221 333444444
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChH
Q 035749 138 DELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIE 217 (405)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 217 (405)
.++...+ .. ... .....|++++|+..+++..+.. |.+...+..+..++...|+++
T Consensus 81 ~~~~~~~-------------~~--~~~---------~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~ 135 (217)
T 2pl2_A 81 EAYVALY-------------RQ--AED---------RERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERD 135 (217)
T ss_dssp HHHHHHH-------------HT--CSS---------HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhh-------------hh--hhh---------hcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChH
Confidence 4444330 00 000 0000044444444444444432 223344444444444444444
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHH
Q 035749 218 GALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRT 295 (405)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 295 (405)
+|+..|++.++.. .+...+..+..++...|++++|...++++.+.. |.+...+..+..++...|++++|...+++
T Consensus 136 ~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 136 KAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4444444444433 333344444444444444444444444444432 23333444444444444444444444443
No 39
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.81 E-value=9.2e-16 Score=143.42 Aligned_cols=322 Identities=12% Similarity=0.105 Sum_probs=167.3
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHH
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVT 97 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (405)
++.--...++.|...|.+.+|+++++++.-.+.. +..+...-+.++.+..+. +..+..++.+++... +
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~----fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d--- 1051 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSV----FSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D--- 1051 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCc----ccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---
Confidence 4444567788899999999999999999844311 223445555566665555 445555555444321 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 035749 98 YNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCL 177 (405)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (405)
...+...+...|.+++|..+|++... .....+.++ ...+++++|.++.+++ -+..+|..+..++..
T Consensus 1052 ~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A 1052 APDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQ 1117 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHh
Confidence 22355556666666666666666420 111112221 1445566666555543 134555566666666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHH
Q 035749 178 TGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKL 257 (405)
Q Consensus 178 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 257 (405)
.|++++|...|.+. .+...|..++.++.+.|++++|.+.+...++.. ++....+.++.+|++.+++++....
T Consensus 1118 ~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f 1189 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF 1189 (1630)
T ss_pred CCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH
Confidence 66666666665442 244555556666666666666666665555432 2222223355555555555532222
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcC
Q 035749 258 FDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLI 337 (405)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 337 (405)
. . .++...+..+...|...|++++|..+|..+ ..|..++.++.+.|++++|.+.+++..
T Consensus 1190 I----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~----- 1248 (1630)
T 1xi4_A 1190 I----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN----- 1248 (1630)
T ss_pred H----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-----
Confidence 1 1 223344445555566666666666666553 245555556666666666666555542
Q ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHH
Q 035749 338 ADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHR 400 (405)
Q Consensus 338 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 400 (405)
+..+|..+..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++.
T Consensus 1249 -n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1249 -STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred -CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 234444444444444444444443322 111333344444444444444444444443
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.80 E-value=1.8e-17 Score=135.02 Aligned_cols=236 Identities=11% Similarity=0.051 Sum_probs=160.1
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--ChHH
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINP--DVVT 97 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~ 97 (405)
..+......+...|++++|+..|+++++.. |.+..++..+..++...|++++|+..++++.+....+ ...+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 76 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-------YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSAD 76 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-------CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHH
Confidence 445667777888888888888888888765 3455577778888888888888888888887732111 1233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 035749 98 YNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCL 177 (405)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (405)
|..+...+...|++++|+..|++..+..+. +...+..+..++...|++++|...+++..+.. +.+...+..+...+..
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH
Confidence 777788888888888888888888775333 55677777778888888888888887777663 4556666666633444
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCC---hHHHHHHHHHHHhCC-CCCc------hhhHHHHHHHHHc
Q 035749 178 TGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKE---IEGALSLYSEMLSKG-IKPT------VVTYNTLFIGLFE 247 (405)
Q Consensus 178 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~ 247 (405)
.+++++|...++++.+.. +.+...+..+...+...++ ++.|...++++.+.. ..|+ ...+..+...+..
T Consensus 155 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 457888888888777764 4445666666777766666 666777777665531 1122 1345556666666
Q ss_pred cccHHHHHHHHHHHHHcC
Q 035749 248 IHQVERAFKLFDEMQRHG 265 (405)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~ 265 (405)
.|++++|...++++.+..
T Consensus 234 ~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 234 NRDKVKADAAWKNILALD 251 (272)
T ss_dssp TTCHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHhcC
Confidence 677777777777666653
No 41
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.80 E-value=6.1e-17 Score=136.84 Aligned_cols=246 Identities=11% Similarity=0.068 Sum_probs=178.1
Q ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCChHH
Q 035749 19 VITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGF-VDKAKELLLQMKDKNINPDVVT 97 (405)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~ 97 (405)
..+|..+...+...|++++|+..|+++++.+ |.+..+|..+..++...|+ +++|+..|+++.+.+ +-+...
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-------P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a 168 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-------AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQV 168 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-------ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHH
Confidence 3567777888888888888888888888875 5567788888888888886 888888888888764 557788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 035749 98 YNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCL 177 (405)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (405)
|..+..++...|++++|+..|+++++..+. +...|..+..++...|++++|+..++++++.. +.+...|+.+..++..
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 888888888888888888888888876544 67778888888888888888888888888875 5567778888887777
Q ss_pred -cCCHHHH-----HHHHHHHHhcCCCCChhhHHHHHHHHhhcC--ChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccc
Q 035749 178 -TGRVNRA-----KELFVSMESMGCKHNVFSYSILINGYCKNK--EIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIH 249 (405)
Q Consensus 178 -~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 249 (405)
.|..++| +..+++..... +.+...|..+..++...| ++++|++.+.++ +. .+.+...+..++.+|.+.|
T Consensus 247 l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 247 TTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHH
T ss_pred hcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHh
Confidence 5554666 47777777664 456677777777777776 577777777776 32 2334556666777776653
Q ss_pred ---------cHHHHHHHHHHH-HHcCCCccHHHHHHHHH
Q 035749 250 ---------QVERAFKLFDEM-QRHGVAADTWAYRTFID 278 (405)
Q Consensus 250 ---------~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~ 278 (405)
..++|..+++++ .+.+ +.....|..+..
T Consensus 324 ~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~ 361 (382)
T 2h6f_A 324 ENQCDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGR 361 (382)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 247777777777 4442 333344444433
No 42
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.80 E-value=3.2e-15 Score=139.82 Aligned_cols=290 Identities=12% Similarity=0.132 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHH
Q 035749 60 AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDE 139 (405)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (405)
+.+|..+..++...|++++|++.|.+. .|...|..++.++.+.|++++|.+.|...++... +....+.++.+
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~Lafa 1176 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFA 1176 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHHH
Confidence 344555555555555555555555332 2444555555555555555555555555444321 21222234555
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHH
Q 035749 140 LCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGA 219 (405)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 219 (405)
|++.+++++...+. + .++...+..+...|...|++++|..+|..+ ..|..++..+.+.|+++.|
T Consensus 1177 YAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~A 1240 (1630)
T 1xi4_A 1177 LAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAA 1240 (1630)
T ss_pred HHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHH
Confidence 55555544322221 1 223344444555555555555555555553 2455555555555666666
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 035749 220 LSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRIL 299 (405)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 299 (405)
.+.+++. .+..+|..+..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++.....
T Consensus 1241 IEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A 1241 VDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred HHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 5555554 1334555555555555555555554332 2335556667777788888888888888777765
Q ss_pred CCCccHHHHHHHHHHHHhc--CCHHHHHHHHhhccCCCcCc------cHHHHHHHHHHHHcCCCHHHHHHH---------
Q 035749 300 KCELDIRSYSCLIDGLCKS--GRLKIAWELFHSLPRGVLIA------DVVTYNIMIHALCADGKMDKAHDL--------- 362 (405)
Q Consensus 300 ~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~--------- 362 (405)
. +-....|..+...|.+. ++..++.+.|..-.. ++| +...|..+...|.+.|+++.|...
T Consensus 1310 e-raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~ 1386 (1630)
T 1xi4_A 1310 E-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAW 1386 (1630)
T ss_pred C-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhh
Confidence 4 45556666666666654 234444444443322 122 456688888888888888888732
Q ss_pred ----HHHHHhCCCCCCHHHHHHHHHHHHccC
Q 035749 363 ----FLDMEAKGVAPDCVAFNTLMLGCIRNN 389 (405)
Q Consensus 363 ----~~~~~~~~~~~~~~~~~~l~~~~~~~g 389 (405)
|+..+. -..++..|...+..|...+
T Consensus 1387 ~~~~Fk~~i~--kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1387 KEGQFKDIIT--KVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred hhHHHHHHhc--ccccHHHHHHHHHHHHhhC
Confidence 222222 2346666666666666555
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.78 E-value=1.3e-16 Score=130.01 Aligned_cols=236 Identities=14% Similarity=0.030 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc--HhhHHHHHH
Q 035749 61 VIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPN--VVTFSVIMD 138 (405)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~ 138 (405)
..+......+...|++++|+..|+++.+.. |.+...+..+..++...|++++|+..++++.+.+..++ ...+..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 445566677777788888888888777663 44555777777777777888888887777776321111 223666777
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHH
Q 035749 139 ELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEG 218 (405)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (405)
++...|++++|...++++.+.. +.+..++..+..++...|++++|...+++..+.. +.+...+..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777664 4455667777777777777777777777776653 4455566666623333447777
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHHHHHcccc---HHHHHHHHHHHHHcC-CCcc------HHHHHHHHHHHhcCCChHH
Q 035749 219 ALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQ---VERAFKLFDEMQRHG-VAAD------TWAYRTFIDGLCKNGYIVE 288 (405)
Q Consensus 219 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~~~~~~ 288 (405)
|...++++.+.. +.+...+..+...+...++ +++|...++++.+.. ..|+ ..++..+...+...|++++
T Consensus 161 A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 777777766642 2234455555555655555 555666666555421 0112 1344555556666666666
Q ss_pred HHHHHHHHHhcC
Q 035749 289 ALELFRTLRILK 300 (405)
Q Consensus 289 a~~~~~~~~~~~ 300 (405)
|...++++.+..
T Consensus 240 A~~~~~~al~~~ 251 (272)
T 3u4t_A 240 ADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 666666665553
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.78 E-value=1.6e-16 Score=134.27 Aligned_cols=248 Identities=8% Similarity=-0.028 Sum_probs=172.6
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCccHhhHHHHH
Q 035749 59 DAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYAND-SNEAKRLFIEMMDQGVQPNVVTFSVIM 137 (405)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 137 (405)
+..+|..+...+...|++++|+..++++++.+ |.+..+|..+..++...|+ +++|+..|++++...+. +...|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 45677888888888888888888888888764 5567788888888888886 88888888888876544 677788888
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhh-cCCh
Q 035749 138 DELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCK-NKEI 216 (405)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~ 216 (405)
.++...|++++|+..|+++++.. +.+...|..+..++...|++++|+..++++.+.. +.+..+|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 88888888888888888888775 5577778888888888888888888888887775 5567778877777777 5554
Q ss_pred HHH-----HHHHHHHHhCCCCCchhhHHHHHHHHHccc--cHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCC-----
Q 035749 217 EGA-----LSLYSEMLSKGIKPTVVTYNTLFIGLFEIH--QVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNG----- 284 (405)
Q Consensus 217 ~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----- 284 (405)
++| +..+++.+... +-+...|..+...+...| ++++|...+.++ +. .+.+...+..++.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccccc
Confidence 666 36666666642 224456666666666655 466666666665 32 2445556666666666543
Q ss_pred ----ChHHHHHHHHHH-HhcCCCccHHHHHHHHHH
Q 035749 285 ----YIVEALELFRTL-RILKCELDIRSYSCLIDG 314 (405)
Q Consensus 285 ----~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~ 314 (405)
..++|.++++++ .+.. +.....|..+...
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~ 362 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKD-TIRKEYWRYIGRS 362 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 246666666666 4443 3334444444443
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.78 E-value=1.9e-15 Score=123.11 Aligned_cols=224 Identities=12% Similarity=0.018 Sum_probs=134.7
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCC
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCK----EGFVDKAKELLLQMKDKNINP 93 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~ 93 (405)
++.++..+...+...|++++|+..|+++.+.+ ++.++..+...+.. .+++++|+..|++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---
Confidence 45566666666777777777777777766522 34556666666666 677777777777766654
Q ss_pred ChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHc----CCCHHHHHHHHHHHHHcCCCCCH
Q 035749 94 DVVTYNSVIRGFCY----ANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCK----NGKMEEASQLLELMIQIGVRPNA 165 (405)
Q Consensus 94 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 165 (405)
++..+..+...+.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +.
T Consensus 73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~ 146 (273)
T 1ouv_A 73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DG 146 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cH
Confidence 55666666666666 666777777666666553 45555666666666 666666666666666654 34
Q ss_pred HHHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhh----cCChHHHHHHHHHHHhCCCCCchhh
Q 035749 166 FVYNTLMDGFCL----TGRVNRAKELFVSMESMGCKHNVFSYSILINGYCK----NKEIEGALSLYSEMLSKGIKPTVVT 237 (405)
Q Consensus 166 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 237 (405)
..+..+...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|+..+++..+.+ +...
T Consensus 147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 220 (273)
T 1ouv_A 147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGG 220 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHH
Confidence 455555555555 566666666666665542 34455555555555 566666666666655543 1334
Q ss_pred HHHHHHHHHc----cccHHHHHHHHHHHHHcC
Q 035749 238 YNTLFIGLFE----IHQVERAFKLFDEMQRHG 265 (405)
Q Consensus 238 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 265 (405)
+..+...+.. .+++++|...+++..+.+
T Consensus 221 ~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 221 CFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 4445555555 555555555555555543
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.78 E-value=3.8e-16 Score=125.59 Aligned_cols=201 Identities=15% Similarity=0.047 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHH
Q 035749 60 AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDE 139 (405)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (405)
+..+..++..+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+.... +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 4455555555555555555555555555442 334555555555555555555555555555544222 44455555555
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHH
Q 035749 140 LCKNGKMEEASQLLELMIQIGVRP-NAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEG 218 (405)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (405)
+...|++++|...++++.+.+..| +...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 555566666666655555421122 33445555555566666666666666555543 3345555555666666666666
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHc
Q 035749 219 ALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (405)
Q Consensus 219 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (405)
|...++++.... +.+...+..+...+...|++++|...++.+.+.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666666655532 233444555555555666666666666666554
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.78 E-value=3.3e-15 Score=121.59 Aligned_cols=226 Identities=12% Similarity=0.013 Sum_probs=176.9
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCccHhh
Q 035749 57 KPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCY----ANDSNEAKRLFIEMMDQGVQPNVVT 132 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 132 (405)
+.++.++..+...+...|++++|+..|++..+. .+...+..+...+.. .+++++|...|++..+.+ +...
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 345778888888888889999999999988874 366778888888888 889999999998888775 6677
Q ss_pred HHHHHHHHHc----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCCCChhhHH
Q 035749 133 FSVIMDELCK----NGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCL----TGRVNRAKELFVSMESMGCKHNVFSYS 204 (405)
Q Consensus 133 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 204 (405)
+..+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 7788888888 888899998888888764 66777888888888 888888888888888764 456677
Q ss_pred HHHHHHhh----cCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHc----cccHHHHHHHHHHHHHcCCCccHHHHHHH
Q 035749 205 ILINGYCK----NKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFE----IHQVERAFKLFDEMQRHGVAADTWAYRTF 276 (405)
Q Consensus 205 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 276 (405)
.+...|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...+++..+.+ +...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 77777777 788888888888887764 44566677777777 788888888888877764 25566667
Q ss_pred HHHHhc----CCChHHHHHHHHHHHhcC
Q 035749 277 IDGLCK----NGYIVEALELFRTLRILK 300 (405)
Q Consensus 277 ~~~~~~----~~~~~~a~~~~~~~~~~~ 300 (405)
...+.. .+++++|...+++..+.+
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 777777 788888888888877765
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.77 E-value=5.2e-16 Score=122.43 Aligned_cols=202 Identities=13% Similarity=0.022 Sum_probs=134.3
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHH
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVT 97 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (405)
+...|..+...+...|++++|+..|+++++.. +.+..++..++..+...|++++|.+.++++.+.. +.+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 78 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-------PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEI 78 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-------ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHH
Confidence 45566777777777777777777777777654 3456677777777777777777777777776653 445666
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCc-cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 035749 98 YNSVIRGFCYA-NDSNEAKRLFIEMMDQGVQP-NVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGF 175 (405)
Q Consensus 98 ~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (405)
+..+...+... |++++|...++++.+.+..| +...+..+..++...|++++|...++++.+.. +.+...+..+..++
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 157 (225)
T 2vq2_A 79 NNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTK 157 (225)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHH
Confidence 77777777777 77777777777776621122 34556666667777777777777777766653 34456666666677
Q ss_pred HccCCHHHHHHHHHHHHhcCCC-CChhhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 035749 176 CLTGRVNRAKELFVSMESMGCK-HNVFSYSILINGYCKNKEIEGALSLYSEMLSK 229 (405)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (405)
...|++++|...++++.+.. + .+...+..+...+...|+.+.+..+++.+...
T Consensus 158 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 158 MLAGQLGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHTCHHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 77777777777777666553 3 45555666666666666777666666666543
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.77 E-value=3e-17 Score=133.93 Aligned_cols=183 Identities=9% Similarity=-0.046 Sum_probs=89.0
Q ss_pred CCHHHHHHHHHHHHHCCC---CccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 035749 109 NDSNEAKRLFIEMMDQGV---QPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAK 185 (405)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 185 (405)
|++++|+..|+++.+... +.+..++..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 445555555555554321 1123445555555555555555555555555543 334555555555555555666666
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcC
Q 035749 186 ELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHG 265 (405)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 265 (405)
..++++.+.. +.+..++..+...+...|++++|...++++... .|+..........+...|++++|...+.......
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 5555555543 334455555555555555566665555555543 2222222222233344455555555555444432
Q ss_pred CCccHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 035749 266 VAADTWAYRTFIDGLCKNGYIVEALELFRTLR 297 (405)
Q Consensus 266 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 297 (405)
+++... ..++..+...++.++|...++.+.
T Consensus 175 -~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~ 204 (275)
T 1xnf_A 175 -DKEQWG-WNIVEFYLGNISEQTLMERLKADA 204 (275)
T ss_dssp -CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHC
T ss_pred -CcchHH-HHHHHHHHHhcCHHHHHHHHHHHh
Confidence 222222 223344444444445555544443
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.77 E-value=8.5e-17 Score=128.64 Aligned_cols=202 Identities=15% Similarity=0.138 Sum_probs=141.4
Q ss_pred CChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChH
Q 035749 17 PNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVV 96 (405)
Q Consensus 17 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 96 (405)
..+..|..+...+...|++++|+..|+++++.. +.+..++..+...+...|++++|+..++++.+.. +.+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 92 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-------KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAAT 92 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchH
Confidence 345567777888888888888888888888764 4567788888888888888888888888887764 45677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 035749 97 TYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFC 176 (405)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (405)
++..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+..++.
T Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 170 (243)
T 2q7f_A 93 AYYGAGNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLA 170 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 788888888888888888888888877643 356677777888888888888888888887764 456677777788888
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 035749 177 LTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK 229 (405)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (405)
..|++++|...++++.+.. +.+..++..+..++...|++++|...++++.+.
T Consensus 171 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 171 NEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 8888888888888877664 455667777778888888888888888887765
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.77 E-value=9.4e-17 Score=130.97 Aligned_cols=227 Identities=13% Similarity=-0.024 Sum_probs=158.2
Q ss_pred HHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhc
Q 035749 29 LCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYA 108 (405)
Q Consensus 29 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 108 (405)
+...|++++|+..|+++++..+.. .+.+..++..++..+...|++++|...|+++.+.. +.+..++..+...+...
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALT---DDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQA 90 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHT
T ss_pred cCccchHHHHHHHHHHHHhccccc---CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHc
Confidence 345688999999999998863100 13357788889999999999999999999988764 55788888888889999
Q ss_pred CCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 035749 109 NDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELF 188 (405)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 188 (405)
|++++|...|+++++..+. +..++..+..++...|++++|...++++.+.. |+.......+..+...|++++|...+
T Consensus 91 ~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~ 167 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVL 167 (275)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999999988876432 56777888888888888888888888888763 33333334444456667888888888
Q ss_pred HHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCC---chhhHHHHHHHHHccccHHHHHHHHHHHHHc
Q 035749 189 VSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP---TVVTYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (405)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (405)
+...... +++...+ .++..+...++.++|...+.+........ +...+..+...+...|++++|...++++...
T Consensus 168 ~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 168 KQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 7766653 3333333 35556666677777777777765542100 1344555556666666666666666666554
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.75 E-value=2.2e-15 Score=121.12 Aligned_cols=207 Identities=11% Similarity=-0.022 Sum_probs=179.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 035749 95 VVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDG 174 (405)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (405)
...+..+...+...|++++|...|+++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 56788889999999999999999999988743 367888999999999999999999999999875 5578889999999
Q ss_pred HHccCCHHHHHHHHHHHHhcCC-CCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHH
Q 035749 175 FCLTGRVNRAKELFVSMESMGC-KHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVER 253 (405)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 253 (405)
+...|++++|...++++...+. +.+...+..+...+...|++++|...++++.... +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999987322 3356788889999999999999999999998864 3457788889999999999999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHH
Q 035749 254 AFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIR 306 (405)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 306 (405)
|...++.+.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~ 244 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY-PGSLE 244 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCCHH
Confidence 999999998864 5677788889999999999999999999998874 33443
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.75 E-value=3.1e-15 Score=117.98 Aligned_cols=205 Identities=8% Similarity=-0.025 Sum_probs=143.4
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHH
Q 035749 57 KPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVI 136 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (405)
+.++..+..++..+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+... .+..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l 82 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHH
Confidence 4566778888888888888888888888887764 45677788888888888888888888888876533 256677777
Q ss_pred HHHHHcC-CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcC
Q 035749 137 MDELCKN-GKMEEASQLLELMIQIGVRP-NAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNK 214 (405)
Q Consensus 137 ~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 214 (405)
...+... |++++|...++++.+.+..| +...+..+..++...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcC
Confidence 7777788 88888888888777632222 24566677777777777777777777776654 345666667777777777
Q ss_pred ChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHc
Q 035749 215 EIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (405)
Q Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (405)
++++|...++++.......+...+..+...+...|+.+.+..+++.+.+.
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 77777777777666432134445555555666667777777666666544
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.74 E-value=3e-16 Score=125.49 Aligned_cols=201 Identities=11% Similarity=0.095 Sum_probs=128.3
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHH
Q 035749 59 DAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMD 138 (405)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (405)
.+..|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence 45567777778888888888888888887753 45677777788888888888888888888776633 25667777777
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHH
Q 035749 139 ELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEG 218 (405)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (405)
.+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 7777888888888888777764 4566677777777777777777777777776654 4456666677777777777777
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHc
Q 035749 219 ALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (405)
Q Consensus 219 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (405)
|...++++.... +.+..++..+...+...|++++|...++++.+.
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 777777766642 234555666666666667777777777666654
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.74 E-value=1.2e-16 Score=138.03 Aligned_cols=170 Identities=15% Similarity=0.143 Sum_probs=100.2
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-
Q 035749 57 KPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPD----VVTYNSVIRGFCYANDSNEAKRLFIEMMDQ----GVQ- 127 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~- 127 (405)
......+......+...|++++|...|+++.+.+ +.+ ..++..+...+...|++++|...+++.... +..
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 4455667777778888888888888888877763 223 346677777788888888888888776542 111
Q ss_pred ccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHccCC--------------------HH
Q 035749 128 PNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVR-PN----AFVYNTLMDGFCLTGR--------------------VN 182 (405)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~ 182 (405)
....++..+...+...|++++|...+++..+.... .+ ..++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 12445666667777777777777777776654200 11 2345555666666666 55
Q ss_pred HHHHHHHHHHhc----C-CCCChhhHHHHHHHHhhcCChHHHHHHHHHHH
Q 035749 183 RAKELFVSMESM----G-CKHNVFSYSILINGYCKNKEIEGALSLYSEML 227 (405)
Q Consensus 183 ~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 227 (405)
+|...+++.... + .+....++..+...+...|++++|...+++..
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 555555554332 0 01112234444455555555555555555444
No 56
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=150.66 Aligned_cols=150 Identities=13% Similarity=0.193 Sum_probs=116.0
Q ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHcC---CCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 035749 19 VITYSTLINGLCRTGHTIVALNLFEEMING---NGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDV 95 (405)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 95 (405)
..+|+++|.+|++.|++++|.++|++|.+. + +.||..+|+.||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG------~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDv 200 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR------KLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL 200 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHH------TTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcC------CCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcH
Confidence 347999999999999999999999887643 4 6789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC------HHHH
Q 035749 96 VTYNSVIRGFCYAND-SNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPN------AFVY 168 (405)
Q Consensus 96 ~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~ 168 (405)
.||+++|.++++.|+ .++|.++|++|.+.|+.||..+|+.++....+ +.+++..+++ ..++.|+ ..+.
T Consensus 201 vTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR----~~vL~~Vrkv-~P~f~p~~~~~~~~~t~ 275 (1134)
T 3spa_A 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR----ATVLKAVHKV-KPTFSLPPQLPPPVNTS 275 (1134)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH----HHHHHHHGGG-CCCCCCCCCCCCCCCCC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH----HHHHHHHHHh-CcccCCCCCCcccccch
Confidence 999999999999887 47888999999999999999999887754433 3334444443 2233433 3344
Q ss_pred HHHHHHHHccC
Q 035749 169 NTLMDGFCLTG 179 (405)
Q Consensus 169 ~~l~~~~~~~~ 179 (405)
..|.+.|.+.+
T Consensus 276 ~LL~dl~s~d~ 286 (1134)
T 3spa_A 276 KLLRDVYAKDG 286 (1134)
T ss_dssp TTTHHHHCCCS
T ss_pred HHHHHHHccCC
Confidence 45556666554
No 57
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.73 E-value=7.3e-14 Score=125.88 Aligned_cols=390 Identities=11% Similarity=0.004 Sum_probs=239.4
Q ss_pred HhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCC---hHHH
Q 035749 3 AAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGF---VDKA 79 (405)
Q Consensus 3 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a 79 (405)
-+..|+..+... +-|..+|..++..+.+.++++.+..+|++++... |.....|...+..-.+.++ ++.+
T Consensus 51 ~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-------P~~~~lW~~Yi~~E~~~~~~~~~~~v 122 (679)
T 4e6h_A 51 VIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-------PLMANIWCMRLSLEFDKMEELDAAVI 122 (679)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTC--CCCHHHH
T ss_pred HHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHhhCCcchHHHH
Confidence 344566666654 5688899999999999999999999999999874 6778889999988888888 9999
Q ss_pred HHHHHHHHhCC-CCCChHHHHHHHHHHHhcCCH--------HHHHHHHHHHHH-CCC-Cc-cHhhHHHHHHHHHc-----
Q 035749 80 KELLLQMKDKN-INPDVVTYNSVIRGFCYANDS--------NEAKRLFIEMMD-QGV-QP-NVVTFSVIMDELCK----- 142 (405)
Q Consensus 80 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~----- 142 (405)
..+|++..... .+|++..|...+....+.++. +...++|+..+. .|. .+ +...|...+.....
T Consensus 123 ~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~ 202 (679)
T 4e6h_A 123 EPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVN 202 (679)
T ss_dssp HHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCS
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccC
Confidence 99999988763 137888888887766665543 334467777654 354 34 34566666654432
Q ss_pred ----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-------------cCCHHH----------------------
Q 035749 143 ----NGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCL-------------TGRVNR---------------------- 183 (405)
Q Consensus 143 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~---------------------- 183 (405)
.++++.+..+|++++......-..+|......-.. ..+++.
T Consensus 203 ~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~ 282 (679)
T 4e6h_A 203 KFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPIT 282 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSS
T ss_pred cHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccc
Confidence 23456677777777643211111222111110000 001111
Q ss_pred ---------------------------------------------HHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHH
Q 035749 184 ---------------------------------------------AKELFVSMESMGCKHNVFSYSILINGYCKNKEIEG 218 (405)
Q Consensus 184 ---------------------------------------------a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (405)
+..+|+++.... +.....|...+..+...|+.++
T Consensus 283 ~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~ 361 (679)
T 4e6h_A 283 LNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDST 361 (679)
T ss_dssp STTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTT
T ss_pred cccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHH
Confidence 223333333321 3344455555555566677777
Q ss_pred HH-HHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCC---------Cc------------cHHHHHHH
Q 035749 219 AL-SLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGV---------AA------------DTWAYRTF 276 (405)
Q Consensus 219 a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~------------~~~~~~~l 276 (405)
|. .+|++.... .+.+...+...+......|++++|..+|+.+..... .| ...++...
T Consensus 362 a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y 440 (679)
T 4e6h_A 362 VITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVY 440 (679)
T ss_dssp HHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHH
Confidence 75 777777664 233444455566666677778888888777765310 12 12245555
Q ss_pred HHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc-CCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCC
Q 035749 277 IDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKS-GRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGK 355 (405)
Q Consensus 277 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 355 (405)
+....+.|+.+.|..+|.++.+.........|...+..-.+. ++++.|..+|+...+. .+.+...|...+......|+
T Consensus 441 ~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~ 519 (679)
T 4e6h_A 441 MNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNE 519 (679)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCC
Confidence 666666777788888888777651122333444333333343 3477888888777664 33355566677776677788
Q ss_pred HHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCchhHHHHHHHHhhh
Q 035749 356 MDKAHDLFLDMEAKGVAP--DCVAFNTLMLGCIRNNETSKVVELLHRMDE 403 (405)
Q Consensus 356 ~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 403 (405)
.+.|..+|++++.....+ ....|...+..-.+.|+.+.+.++.+++.+
T Consensus 520 ~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~ 569 (679)
T 4e6h_A 520 ESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE 569 (679)
T ss_dssp HHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888877753211 234666666766777888888888777764
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.73 E-value=2.1e-16 Score=136.85 Aligned_cols=273 Identities=15% Similarity=0.096 Sum_probs=146.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccH----hhHHHHHHHHHcCCCHHHHHHHHHHHHHc----C-CCCCHH
Q 035749 96 VTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNV----VTFSVIMDELCKNGKMEEASQLLELMIQI----G-VRPNAF 166 (405)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~ 166 (405)
..+..+...+...|++++|+..|+++++.+.. +. ..+..+...+...|++++|...++++.+. + .+....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34445566677777777777777777765332 22 35666677777777777777777776543 1 122334
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcC-----CCCChhhHHHHHHHHhhcCC-----------------hHHHHHHHH
Q 035749 167 VYNTLMDGFCLTGRVNRAKELFVSMESMG-----CKHNVFSYSILINGYCKNKE-----------------IEGALSLYS 224 (405)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~ 224 (405)
++..+...+...|++++|...++++.... .+....++..+...|...|+ +++|+..++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 55666667777777777777777665431 11223355566666666666 666666665
Q ss_pred HHHhC----CC-CCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCC-cc----HHHHHHHHHHHhcCCChHHHHHHHH
Q 035749 225 EMLSK----GI-KPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVA-AD----TWAYRTFIDGLCKNGYIVEALELFR 294 (405)
Q Consensus 225 ~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 294 (405)
+.... +. ......+..+...+...|++++|...+.+..+.... ++ ...+..+...+...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 54431 10 111224455555566666666666666655542100 01 1144455555555666666666665
Q ss_pred HHHhcCCC-----ccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCC-----cCccHHHHHHHHHHHHcCCCHHHHHHHHH
Q 035749 295 TLRILKCE-----LDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGV-----LIADVVTYNIMIHALCADGKMDKAHDLFL 364 (405)
Q Consensus 295 ~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 364 (405)
++...... ....++..++..+...|++++|...+++..+.. ......++..+..+|...|++++|...++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 55443200 013344555555555555665555555543310 00012344455555555555555555555
Q ss_pred HHHhC
Q 035749 365 DMEAK 369 (405)
Q Consensus 365 ~~~~~ 369 (405)
++.+.
T Consensus 368 ~al~~ 372 (411)
T 4a1s_A 368 QHLQL 372 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55553
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.73 E-value=2.6e-16 Score=135.96 Aligned_cols=301 Identities=14% Similarity=0.062 Sum_probs=211.9
Q ss_pred CCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccc--cHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----
Q 035749 16 EPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKP--DAVIYTTIIDGLCKEGFVDKAKELLLQMKDK---- 89 (405)
Q Consensus 16 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 89 (405)
.+....+......+...|++++|+..|+++++..+. .+ ...++..+...+...|++++|...+++....
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 80 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-----DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI 80 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-----cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 445667788899999999999999999999987521 11 1467889999999999999999999987543
Q ss_pred CC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CccHhhHHHHHHHHHcCCC------------------
Q 035749 90 NI-NPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGV-----QPNVVTFSVIMDELCKNGK------------------ 145 (405)
Q Consensus 90 ~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~------------------ 145 (405)
+. +....++..+...+...|++++|...+++..+... .....++..+...+...|+
T Consensus 81 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~ 160 (406)
T 3sf4_A 81 GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVR 160 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHH
T ss_pred cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHH
Confidence 21 12356788889999999999999999998875411 1124477888889999999
Q ss_pred --HHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-C----ChhhHHHHHHHHhhc
Q 035749 146 --MEEASQLLELMIQI----GV-RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCK-H----NVFSYSILINGYCKN 213 (405)
Q Consensus 146 --~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~ 213 (405)
+++|...+++..+. +. +....++..+...+...|++++|...+++..+.... + ...++..+...+...
T Consensus 161 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 240 (406)
T 3sf4_A 161 DALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL 240 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 99999999887653 11 112346788889999999999999999988654211 1 123677888888999
Q ss_pred CChHHHHHHHHHHHhC----CCCC-chhhHHHHHHHHHccccHHHHHHHHHHHHHcC----C-CccHHHHHHHHHHHhcC
Q 035749 214 KEIEGALSLYSEMLSK----GIKP-TVVTYNTLFIGLFEIHQVERAFKLFDEMQRHG----V-AADTWAYRTFIDGLCKN 283 (405)
Q Consensus 214 ~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~ 283 (405)
|++++|...+++.... +..+ ...++..+...+...|++++|...+.+..+.. . .....++..+...+...
T Consensus 241 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 320 (406)
T 3sf4_A 241 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTAL 320 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 9999999999887653 1111 13456677777788888888888887766431 0 11134556666677777
Q ss_pred CChHHHHHHHHHHHhc----CC-CccHHHHHHHHHHHHhcCCH
Q 035749 284 GYIVEALELFRTLRIL----KC-ELDIRSYSCLIDGLCKSGRL 321 (405)
Q Consensus 284 ~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~ 321 (405)
|++++|...+++..+. +. +....++..+...+...|+.
T Consensus 321 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 321 GNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 7777777777766443 10 11233455555555555544
No 60
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=150.94 Aligned_cols=151 Identities=15% Similarity=0.180 Sum_probs=122.8
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHh---CCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHH
Q 035749 59 DAVIYTTIIDGLCKEGFVDKAKELLLQMKD---KNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSV 135 (405)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (405)
...+|+.+|.+|++.|++++|.++|++|.+ .|+.||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+.
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 356899999999999999999999988764 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC------hhhHHHHHH
Q 035749 136 IMDELCKNGK-MEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHN------VFSYSILIN 208 (405)
Q Consensus 136 l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~ 208 (405)
++.++++.|+ .++|.++|++|.+.|+.||..+|+.++....+. .+++..+++ ..+..|+ ..+...|..
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 9999999997 588999999999999999999999887644332 333333333 1122222 334445666
Q ss_pred HHhhcC
Q 035749 209 GYCKNK 214 (405)
Q Consensus 209 ~~~~~~ 214 (405)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 666544
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.72 E-value=7.5e-16 Score=133.38 Aligned_cols=276 Identities=13% Similarity=0.077 Sum_probs=213.3
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCc
Q 035749 58 PDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDV----VTYNSVIRGFCYANDSNEAKRLFIEMMDQ----G-VQP 128 (405)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~ 128 (405)
.....+..+...+...|++++|+..|+++.+.. +.+. .++..+...+...|++++|...+++..+. + .+.
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 345567778888999999999999999998874 3343 47888999999999999999999988753 1 122
Q ss_pred cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHccCC-----------------HHHHHH
Q 035749 129 NVVTFSVIMDELCKNGKMEEASQLLELMIQIG-----VRPNAFVYNTLMDGFCLTGR-----------------VNRAKE 186 (405)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~ 186 (405)
...++..+...+...|++++|...++++.+.. .+....++..+...+...|+ +++|..
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 45677888899999999999999999887651 12234577888899999999 999999
Q ss_pred HHHHHHhc----CC-CCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCC-Cc----hhhHHHHHHHHHccccHHHHHH
Q 035749 187 LFVSMESM----GC-KHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIK-PT----VVTYNTLFIGLFEIHQVERAFK 256 (405)
Q Consensus 187 ~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~ 256 (405)
.+++..+. +. +....++..+...+...|++++|+..+++....... ++ ...+..+...+...|++++|..
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 99887543 11 123447788889999999999999999998764110 11 1267788889999999999999
Q ss_pred HHHHHHHcCC--C---ccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCC-----CccHHHHHHHHHHHHhcCCHHHHHH
Q 035749 257 LFDEMQRHGV--A---ADTWAYRTFIDGLCKNGYIVEALELFRTLRILKC-----ELDIRSYSCLIDGLCKSGRLKIAWE 326 (405)
Q Consensus 257 ~~~~~~~~~~--~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~ 326 (405)
.+++...... . ....++..+...+...|++++|...+++...... .....++..++.+|...|++++|..
T Consensus 285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 364 (411)
T 4a1s_A 285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK 364 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 9998876421 1 1145677888899999999999999998865420 1124578888999999999999999
Q ss_pred HHhhccCC
Q 035749 327 LFHSLPRG 334 (405)
Q Consensus 327 ~~~~~~~~ 334 (405)
.+++..+.
T Consensus 365 ~~~~al~~ 372 (411)
T 4a1s_A 365 YAEQHLQL 372 (411)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988874
No 62
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.71 E-value=9.4e-15 Score=125.14 Aligned_cols=298 Identities=12% Similarity=0.010 Sum_probs=194.3
Q ss_pred HHHhcCChHHHHHHHHHHHhC--CCCCC--hHHHHHHHHH--HHhcCCHHHHH-----------HHHHHHHHCCCCcc--
Q 035749 69 GLCKEGFVDKAKELLLQMKDK--NINPD--VVTYNSVIRG--FCYANDSNEAK-----------RLFIEMMDQGVQPN-- 129 (405)
Q Consensus 69 ~~~~~~~~~~a~~~~~~~~~~--~~~~~--~~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~-- 129 (405)
.+.+.+++++|..+++++.+. ....+ ...|..++.. ....++++.+. +.++.+.....+.+
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~ 100 (383)
T 3ulq_A 21 MYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGL 100 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhH
Confidence 345689999999999998654 22223 3333333322 22233344444 56666543211101
Q ss_pred --HhhHHHHHHHHHcCCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC------
Q 035749 130 --VVTFSVIMDELCKNGKMEEASQLLELMIQI----GVRP-NAFVYNTLMDGFCLTGRVNRAKELFVSMESMGC------ 196 (405)
Q Consensus 130 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------ 196 (405)
...+......+...|++++|...+++..+. +.++ ...++..+..++...|++++|...+++..+...
T Consensus 101 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 101 LEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 011223566677889999999999988764 1111 245677888889999999999998888765411
Q ss_pred CCChhhHHHHHHHHhhcCChHHHHHHHHHHHhC----CCCC-chhhHHHHHHHHHccccHHHHHHHHHHHHHc----CC-
Q 035749 197 KHNVFSYSILINGYCKNKEIEGALSLYSEMLSK----GIKP-TVVTYNTLFIGLFEIHQVERAFKLFDEMQRH----GV- 266 (405)
Q Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~- 266 (405)
+....++..+...|...|++++|+..+++.... +..+ ...++..+...|...|++++|...+.+..+. +.
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 112346778888888889999998888887653 1011 1236777888888888888888888887762 22
Q ss_pred CccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC----CCccHHHHHHHHHHHHhcCC---HHHHHHHHhhccCCCcCcc
Q 035749 267 AADTWAYRTFIDGLCKNGYIVEALELFRTLRILK----CELDIRSYSCLIDGLCKSGR---LKIAWELFHSLPRGVLIAD 339 (405)
Q Consensus 267 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~ 339 (405)
+....++..+..++...|++++|...+++..... .+.....+..+...+...|+ +++|..++++... .+..
T Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~~ 338 (383)
T 3ulq_A 261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YADL 338 (383)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHHH
Confidence 3345667778888888888888888888775431 12222335667777777887 7777777777632 2223
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 035749 340 VVTYNIMIHALCADGKMDKAHDLFLDMEA 368 (405)
Q Consensus 340 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 368 (405)
...+..+...|...|++++|...++++.+
T Consensus 339 ~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 339 EDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45667778888888888888888887765
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.71 E-value=7.7e-16 Score=129.36 Aligned_cols=132 Identities=14% Similarity=0.032 Sum_probs=81.0
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhcC----C-CccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCC----c-CccHH
Q 035749 272 AYRTFIDGLCKNGYIVEALELFRTLRILK----C-ELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGV----L-IADVV 341 (405)
Q Consensus 272 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~ 341 (405)
.+..+...+...|++++|...++++.... . .....++..++..+...|++++|...+++..+.. . .....
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 45555666666777777777766654321 0 1112356666777777777777777776654321 0 01145
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHccCchhHHHHHHHHhhh
Q 035749 342 TYNIMIHALCADGKMDKAHDLFLDMEAK----GV-APDCVAFNTLMLGCIRNNETSKVVELLHRMDE 403 (405)
Q Consensus 342 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 403 (405)
++..+...+...|++++|...++++.+. +. .....++..+...+...|++++|...+++..+
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5666777777778888887777776653 10 01133566677777788888888887777654
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.70 E-value=4.3e-14 Score=117.00 Aligned_cols=235 Identities=10% Similarity=0.015 Sum_probs=176.5
Q ss_pred hHHHHHHHHHHhc----Cch----HHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHh-------cCCh-------H
Q 035749 20 ITYSTLINGLCRT----GHT----IVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCK-------EGFV-------D 77 (405)
Q Consensus 20 ~~~~~l~~~~~~~----~~~----~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~ 77 (405)
..|...+....+. ++. ++|+..|+++++.. |.++..|..++..+.. .|++ +
T Consensus 9 ~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 81 (308)
T 2ond_A 9 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 81 (308)
T ss_dssp HHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHhchhhhhccchhhcccchH
Confidence 4566666655443 233 68999999999874 6778899998888764 4876 8
Q ss_pred HHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHh-hHHHHHHHHHcCCCHHHHHHHHHHH
Q 035749 78 KAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVV-TFSVIMDELCKNGKMEEASQLLELM 156 (405)
Q Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~ 156 (405)
+|..+|++..+.-.|.+...|..++..+...|++++|..+|+++++..+. +.. .|..++..+.+.|++++|..+|++.
T Consensus 82 ~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 82 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999987312446778999999999999999999999999875322 333 7888888888899999999999998
Q ss_pred HHcCCCCCHHHHHHHHHHHH-ccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCC-CCC-
Q 035749 157 IQIGVRPNAFVYNTLMDGFC-LTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKG-IKP- 233 (405)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~- 233 (405)
.+.. +.+...|...+.... ..|++++|..+|++..+.. +.+...|..++..+.+.|++++|..+|++.+... .+|
T Consensus 161 ~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~ 238 (308)
T 2ond_A 161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred HhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHH
Confidence 8864 445555554443322 3688888888888887764 4567788888888888888888888888888752 344
Q ss_pred -chhhHHHHHHHHHccccHHHHHHHHHHHHHc
Q 035749 234 -TVVTYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (405)
Q Consensus 234 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (405)
....|..++......|+.+.|..+++++.+.
T Consensus 239 ~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 239 KSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456677777777788888888888887765
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.70 E-value=6.5e-15 Score=112.18 Aligned_cols=167 Identities=11% Similarity=0.062 Sum_probs=114.2
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHH
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVT 97 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (405)
++..|..+...+...|++++|++.|+++++.+ |.++.++..+..++.+.|++++|...+....... +.+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~ 75 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-------PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEA 75 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHH
Confidence 45567777777777777777777777777765 4556677777777777777777777777776553 445666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 035749 98 YNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCL 177 (405)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (405)
+..+...+...++++.|...+.+.....+. +...+..+..++...|++++|++.|++..+.. +.+..++..+..++..
T Consensus 76 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~ 153 (184)
T 3vtx_A 76 YYILGSANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEG 153 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHH
Confidence 666666777777777777777776665332 55666666677777777777777777776664 4456666667777777
Q ss_pred cCCHHHHHHHHHHHHhc
Q 035749 178 TGRVNRAKELFVSMESM 194 (405)
Q Consensus 178 ~~~~~~a~~~~~~~~~~ 194 (405)
.|++++|...|+++.+.
T Consensus 154 ~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 154 KGLRDEAVKYFKKALEK 170 (184)
T ss_dssp TTCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 77777777777766654
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.70 E-value=1.1e-15 Score=133.99 Aligned_cols=216 Identities=12% Similarity=0.013 Sum_probs=184.6
Q ss_pred CchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCH
Q 035749 33 GHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFV-DKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDS 111 (405)
Q Consensus 33 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 111 (405)
+.+++++..++...... +.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++
T Consensus 82 ~~~~~al~~l~~~~~~~-------~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~ 153 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSA-------QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDV 153 (474)
T ss_dssp HHHHHHHHHHHHHHTTC-------CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHhccC-------chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCH
Confidence 45678888888877654 56788999999999999999 99999999998874 55688999999999999999
Q ss_pred HHHHHHHHHHHHCCCCccHhhHHHHHHHHHcC---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc----
Q 035749 112 NEAKRLFIEMMDQGVQPNVVTFSVIMDELCKN---------GKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLT---- 178 (405)
Q Consensus 112 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 178 (405)
++|...|++.++.. |+...+..+..++... |++++|+..++++.+.. +.+...+..+..+|...
T Consensus 154 ~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~ 230 (474)
T 4abn_A 154 TSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNT 230 (474)
T ss_dssp HHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhh
Confidence 99999999998864 5568888899999998 99999999999999885 56788889999999888
Q ss_pred ----CCHHHHHHHHHHHHhcCCC---CChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccH
Q 035749 179 ----GRVNRAKELFVSMESMGCK---HNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQV 251 (405)
Q Consensus 179 ----~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 251 (405)
|++++|...|+++.+.. + .+...|..+..+|...|++++|...|++..+.. +.+...+..+...+...|++
T Consensus 231 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~ 308 (474)
T 4abn_A 231 GQNPKISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRL 308 (474)
T ss_dssp TCCHHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHH
Confidence 99999999999998874 4 578889999999999999999999999998863 33556788888889999999
Q ss_pred HHHHHHHHHH
Q 035749 252 ERAFKLFDEM 261 (405)
Q Consensus 252 ~~a~~~~~~~ 261 (405)
++|...+.++
T Consensus 309 ~eAi~~~~~~ 318 (474)
T 4abn_A 309 TSLLESKGKT 318 (474)
T ss_dssp HHHHHHTTTC
T ss_pred HHHHHHhccc
Confidence 9998877655
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.69 E-value=2.5e-14 Score=118.48 Aligned_cols=218 Identities=11% Similarity=0.031 Sum_probs=180.1
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHHHHHHHh-------cCch-------HHHHHHHHHHHcCCCCCcccccccHHHHHHHH
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTLINGLCR-------TGHT-------IVALNLFEEMINGNGEFGVVCKPDAVIYTTII 67 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 67 (405)
+|+.+|+..++.. +.++..|..++..+.. .|++ ++|..+|+++++.- .|.+...|..++
T Consensus 34 ~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~------~p~~~~~~~~~~ 106 (308)
T 2ond_A 34 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL------LKKNMLLYFAYA 106 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT------TTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh------CcccHHHHHHHH
Confidence 5778999998864 5678889988888763 5886 89999999999842 245678999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHH-cCCC
Q 035749 68 DGLCKEGFVDKAKELLLQMKDKNINPDVV-TYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELC-KNGK 145 (405)
Q Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~ 145 (405)
..+.+.|++++|..+|+++.+.. +.+.. +|..++..+.+.|++++|..+|++.++... ++...|...+.... ..|+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~ 184 (308)
T 2ond_A 107 DYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKD 184 (308)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCC
T ss_pred HHHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999863 22444 899999999999999999999999998743 34555554444322 3799
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC-CCC--ChhhHHHHHHHHhhcCChHHHHHH
Q 035749 146 MEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMG-CKH--NVFSYSILINGYCKNKEIEGALSL 222 (405)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~ 222 (405)
+++|..+|++.++.. +.+...+..++..+...|++++|..+|+++.... .+| ....|..++..+.+.|+.+.|..+
T Consensus 185 ~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 185 KSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999998874 5578889999999999999999999999999863 343 466888999999999999999999
Q ss_pred HHHHHhC
Q 035749 223 YSEMLSK 229 (405)
Q Consensus 223 ~~~~~~~ 229 (405)
++++.+.
T Consensus 264 ~~~a~~~ 270 (308)
T 2ond_A 264 EKRRFTA 270 (308)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999876
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.69 E-value=1e-15 Score=128.59 Aligned_cols=279 Identities=15% Similarity=0.094 Sum_probs=160.7
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-cc
Q 035749 59 DAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPD----VVTYNSVIRGFCYANDSNEAKRLFIEMMDQ----GVQ-PN 129 (405)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~ 129 (405)
+...+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...+++.... +.. ..
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 34455666677777788888888887777653 223 355666777777777777777777766532 111 12
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCC--------------------HHHH
Q 035749 130 VVTFSVIMDELCKNGKMEEASQLLELMIQIGV-RPN----AFVYNTLMDGFCLTGR--------------------VNRA 184 (405)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a 184 (405)
..++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 34455566666666666666666666544310 011 1244444455555555 4444
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCC-CCchhhHHHHHHHHHccccHHHHHHHHHHHHH
Q 035749 185 KELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGI-KPTVVTYNTLFIGLFEIHQVERAFKLFDEMQR 263 (405)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 263 (405)
...+++..... . ..+. ......+..+...+...|++++|...+.+..+
T Consensus 163 ~~~~~~a~~~~----------------------------~---~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 211 (338)
T 3ro2_A 163 VDLYEENLSLV----------------------------T---ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 211 (338)
T ss_dssp HHHHHHHHHHH----------------------------H---HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----------------------------H---hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44444332210 0 0000 01122445555556666666666666665543
Q ss_pred cC----C-CccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCC----C-ccHHHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 035749 264 HG----V-AADTWAYRTFIDGLCKNGYIVEALELFRTLRILKC----E-LDIRSYSCLIDGLCKSGRLKIAWELFHSLPR 333 (405)
Q Consensus 264 ~~----~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 333 (405)
.. . .....++..+...+...|++++|...+++...... + ....++..++..+...|++++|...++++.+
T Consensus 212 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 212 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 21 0 01122556666677777777777777776654310 0 1145667777888888888888888877654
Q ss_pred CC-----cCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 334 GV-----LIADVVTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 334 ~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
.. ......++..+...+...|++++|...++++.+.
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 292 IAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 21 1112446777888888899999999999888764
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.69 E-value=8.1e-15 Score=125.55 Aligned_cols=299 Identities=9% Similarity=-0.025 Sum_probs=211.9
Q ss_pred HHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHH--HHhcCChHHHH-----------HHHHHHHhCCCCCCh
Q 035749 29 LCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDG--LCKEGFVDKAK-----------ELLLQMKDKNINPDV 95 (405)
Q Consensus 29 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~ 95 (405)
+.+.+++++|..+++++.+..+... ..++...|..++.. ..-.++++.+. +.++.+.... .+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~--~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~ 97 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQME--EDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARL 97 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCc
Confidence 4578999999999999876431100 12233344444332 22234444444 6666665431 122
Q ss_pred HH------HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc-cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC---
Q 035749 96 VT------YNSVIRGFCYANDSNEAKRLFIEMMDQ----GVQP-NVVTFSVIMDELCKNGKMEEASQLLELMIQIGV--- 161 (405)
Q Consensus 96 ~~------~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--- 161 (405)
.. +......+...|++++|...|++..+. +..+ ...++..+..++...|++++|...+++..+...
T Consensus 98 ~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 177 (383)
T 3ulq_A 98 TGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE 177 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS
T ss_pred hhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc
Confidence 22 223667788999999999999999864 1112 346788899999999999999999999876421
Q ss_pred ---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-----CChhhHHHHHHHHhhcCChHHHHHHHHHHHhC----
Q 035749 162 ---RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCK-----HNVFSYSILINGYCKNKEIEGALSLYSEMLSK---- 229 (405)
Q Consensus 162 ---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 229 (405)
+....++..+..+|...|++++|...+++..+.... ....++..+...|...|++++|+..+++....
T Consensus 178 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 257 (383)
T 3ulq_A 178 AYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES 257 (383)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 112357788899999999999999999998754211 12247888999999999999999999998872
Q ss_pred CC-CCchhhHHHHHHHHHccccHHHHHHHHHHHHHc----CCCccHHHHHHHHHHHhcCCC---hHHHHHHHHHHHhcCC
Q 035749 230 GI-KPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRH----GVAADTWAYRTFIDGLCKNGY---IVEALELFRTLRILKC 301 (405)
Q Consensus 230 ~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~ 301 (405)
+. +....++..+...+...|++++|...+++..+. +.+.....+..+...+...|+ +++|..++++... .
T Consensus 258 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~ 335 (383)
T 3ulq_A 258 NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--Y 335 (383)
T ss_dssp TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--H
T ss_pred ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--H
Confidence 22 334567888999999999999999999988753 112223345667888889998 7777777776522 1
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 035749 302 ELDIRSYSCLIDGLCKSGRLKIAWELFHSLPR 333 (405)
Q Consensus 302 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 333 (405)
+.....+..++..|...|++++|...+++..+
T Consensus 336 ~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 336 ADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 23445678899999999999999999987653
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.68 E-value=2.3e-14 Score=109.10 Aligned_cols=168 Identities=15% Similarity=0.112 Sum_probs=137.9
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHH
Q 035749 58 PDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIM 137 (405)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 137 (405)
.++.+|..+...+.+.|++++|++.|++..+.. |-++.++..+..++...|++++|...+......... +...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHH
Confidence 456788889999999999999999999888775 557888888888888999999999988888776433 566777777
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChH
Q 035749 138 DELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIE 217 (405)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 217 (405)
..+...++++.+...+.+..+.. +.+...+..+..++...|++++|+..|++..+.. |.+..++..+..+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence 88888888899888888888774 5567788888888888888888888888888775 567778888888888888888
Q ss_pred HHHHHHHHHHhC
Q 035749 218 GALSLYSEMLSK 229 (405)
Q Consensus 218 ~a~~~~~~~~~~ 229 (405)
+|+..|++.++.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 888888888775
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.67 E-value=8.1e-15 Score=128.62 Aligned_cols=217 Identities=14% Similarity=-0.023 Sum_probs=189.4
Q ss_pred CChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHH
Q 035749 74 GFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDS-NEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQL 152 (405)
Q Consensus 74 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 152 (405)
+.+++++..++...... +.+...+..+...+...|++ ++|++.|++.++..+. +...+..+..+|...|++++|...
T Consensus 82 ~~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34678888888877653 55789999999999999999 9999999999987543 688999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcc---------CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhc--------CC
Q 035749 153 LELMIQIGVRPNAFVYNTLMDGFCLT---------GRVNRAKELFVSMESMGCKHNVFSYSILINGYCKN--------KE 215 (405)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~ 215 (405)
|+++.+. .|+...+..+..++... |++++|...++++.+.. +.+...|..+..+|... |+
T Consensus 160 ~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 9999987 46678899999999999 99999999999999885 56788999999999998 99
Q ss_pred hHHHHHHHHHHHhCCCC--CchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHH
Q 035749 216 IEGALSLYSEMLSKGIK--PTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELF 293 (405)
Q Consensus 216 ~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 293 (405)
+++|+..|++..+.... .+...+..+..++...|++++|...|+++.+.. +.+...+..+..++...|++++|...+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999986310 377889999999999999999999999999875 556778889999999999999999877
Q ss_pred HHH
Q 035749 294 RTL 296 (405)
Q Consensus 294 ~~~ 296 (405)
.++
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 655
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.64 E-value=5.6e-15 Score=122.70 Aligned_cols=177 Identities=15% Similarity=0.085 Sum_probs=134.9
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCc-ccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------C
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFG-VVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK------N 90 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 90 (405)
+..++..+...+...|++++|+.+|+++++...... ...+....++..+...+...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 456788999999999999999999999987310000 002456778999999999999999999999988754 1
Q ss_pred -CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc---
Q 035749 91 -INPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQ------GV-QPNVVTFSVIMDELCKNGKMEEASQLLELMIQI--- 159 (405)
Q Consensus 91 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 159 (405)
.+....++..+...+...|++++|...++++.+. +. +.....+..+...+...|++++|...++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1334667888899999999999999999988764 11 224556777888888999999999998888765
Q ss_pred ---CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 035749 160 ---GV-RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESM 194 (405)
Q Consensus 160 ---~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (405)
+. +....++..+..++...|++++|...++++.+.
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11 223456777888888888888888888887653
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.64 E-value=4.3e-15 Score=123.37 Aligned_cols=173 Identities=16% Similarity=0.105 Sum_probs=129.6
Q ss_pred ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 035749 56 CKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK-------NINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQ---- 124 (405)
Q Consensus 56 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 124 (405)
.+....++..+...+...|++++|..+++++.+. ..+....++..+...+...|++++|...+++....
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3556778999999999999999999999988763 22345677888889999999999999999888754
Q ss_pred --C-CCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 035749 125 --G-VQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI------GV-RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESM 194 (405)
Q Consensus 125 --~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (405)
+ .+....++..+...+...|++++|...++++.+. +. +.....+..+..++...|++++|..+++++.+.
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 2234567778888888899999999988887764 21 223455677778888888888888888887654
Q ss_pred ------C-CCCChhhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 035749 195 ------G-CKHNVFSYSILINGYCKNKEIEGALSLYSEMLS 228 (405)
Q Consensus 195 ------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (405)
+ .+....++..+...+...|++++|...++++..
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 122344667777788888888888888877765
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.62 E-value=7.7e-13 Score=112.98 Aligned_cols=309 Identities=9% Similarity=-0.015 Sum_probs=184.0
Q ss_pred cccHHHHHHHHHHH--HhcCChHHHHHHHHHHHhC--CC--CCChHHHHHHHHH--HHhcCCHHHHH---------HHHH
Q 035749 57 KPDAVIYTTIIDGL--CKEGFVDKAKELLLQMKDK--NI--NPDVVTYNSVIRG--FCYANDSNEAK---------RLFI 119 (405)
Q Consensus 57 ~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~--~~~~~~~~~a~---------~~~~ 119 (405)
.|+..+-..+-..| +..+++++|..+++++.+. .. .++...|-.++.. ..-.+.+..+. ..++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 45556666666666 7889999999999987553 11 1223333333322 11112222222 4555
Q ss_pred HHHHCCCCcc----HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHccCCHHHHHHHHHH
Q 035749 120 EMMDQGVQPN----VVTFSVIMDELCKNGKMEEASQLLELMIQIGV-RP----NAFVYNTLMDGFCLTGRVNRAKELFVS 190 (405)
Q Consensus 120 ~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~ 190 (405)
.+.....+.+ ...+......+...|++++|...++++.+... .+ ...++..+..+|...|+++.|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 5433211101 11223344556678888888888888775421 11 234667777888888888888888887
Q ss_pred HHhcCC--C----CChhhHHHHHHHHhhcCChHHHHHHHHHHHhC----CCC-CchhhHHHHHHHHHccccHHHHHHHHH
Q 035749 191 MESMGC--K----HNVFSYSILINGYCKNKEIEGALSLYSEMLSK----GIK-PTVVTYNTLFIGLFEIHQVERAFKLFD 259 (405)
Q Consensus 191 ~~~~~~--~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~ 259 (405)
..+... . ....++..+...|...|++++|...+.+.... +.. ....++..+..++...|++++|...+.
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 754311 0 12446677777888888888888888776652 111 112356667777777888888888887
Q ss_pred HHHH-----cCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC----CCccHHHHHHHHHHHHhcCC---HHHHHHH
Q 035749 260 EMQR-----HGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILK----CELDIRSYSCLIDGLCKSGR---LKIAWEL 327 (405)
Q Consensus 260 ~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~a~~~ 327 (405)
+... .. +....++..+..++.+.|++++|...+++..... .+.....+..+...+...++ +.+|...
T Consensus 247 ~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 247 KAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 7765 32 3335566777777777788888877777766542 12223344555555666666 6667776
Q ss_pred HhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 035749 328 FHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEA 368 (405)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 368 (405)
+++... .+.....+..+...|...|++++|...|+++.+
T Consensus 326 ~~~~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 326 FEKKNL--HAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCCC--hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 665322 122334555677777777777777777777654
No 75
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.62 E-value=1.7e-11 Score=110.69 Aligned_cols=371 Identities=11% Similarity=0.009 Sum_probs=252.1
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCc---hHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCCh--
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGH---TIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFV-- 76 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-- 76 (405)
.|..+|+.++.. +|.....|...+..-.+.|+ ++.+..+|++++...+ .+|+...|...+....+.++.
T Consensus 84 ~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~-----~~~sv~LW~~Yl~f~~~~~~~~~ 157 (679)
T 4e6h_A 84 QVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKEL-----GNNDLSLWLSYITYVRKKNDIIT 157 (679)
T ss_dssp HHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSS-----CCCCHHHHHHHHHHHHHHSCSTT
T ss_pred HHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHHhccccc
Confidence 477899999987 46778889999999999999 9999999999998641 137888998888777666554
Q ss_pred ------HHHHHHHHHHHh-CCC-CC-ChHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCccHhhHHH---
Q 035749 77 ------DKAKELLLQMKD-KNI-NP-DVVTYNSVIRGFCY---------ANDSNEAKRLFIEMMDQGVQPNVVTFSV--- 135 (405)
Q Consensus 77 ------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~--- 135 (405)
+...++|+.... .|. .+ +...|...+..... .++++.+..+|+.++......-..+|..
T Consensus 158 ~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~ 237 (679)
T 4e6h_A 158 GGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQ 237 (679)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 334467777654 354 33 45677777765432 3345667777777764311111111110
Q ss_pred ----------------------------------------------------------------------HHHHHHcCC-
Q 035749 136 ----------------------------------------------------------------------IMDELCKNG- 144 (405)
Q Consensus 136 ----------------------------------------------------------------------l~~~~~~~~- 144 (405)
.+..--..+
T Consensus 238 fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~ 317 (679)
T 4e6h_A 238 WEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKL 317 (679)
T ss_dssp HHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTT
T ss_pred HHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCc
Confidence 000000000
Q ss_pred ------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH-HHHHHHHhcCCCCChhhHHHHHHHHhhcCChH
Q 035749 145 ------KMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAK-ELFVSMESMGCKHNVFSYSILINGYCKNKEIE 217 (405)
Q Consensus 145 ------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 217 (405)
..+.+..+|++++.. ++-....|...+..+...|+.++|. .+|++.... +|.+...|..++....+.|+++
T Consensus 318 ~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e 395 (679)
T 4e6h_A 318 ELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIP 395 (679)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHH
T ss_pred cccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHH
Confidence 011233445555544 2445666666677777788888996 999999875 3566777788888899999999
Q ss_pred HHHHHHHHHHhCC---------CCCc------------hhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHH
Q 035749 218 GALSLYSEMLSKG---------IKPT------------VVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTF 276 (405)
Q Consensus 218 ~a~~~~~~~~~~~---------~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 276 (405)
.|.++|++++... ..|+ ...|...+....+.|+.+.|..+|..+.+.........|...
T Consensus 396 ~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~ 475 (679)
T 4e6h_A 396 EIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLEN 475 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 9999999988631 0131 235666677777889999999999999876112233444444
Q ss_pred HHHHhcC-CChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcC--ccHHHHHHHHHHHHcC
Q 035749 277 IDGLCKN-GYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLI--ADVVTYNIMIHALCAD 353 (405)
Q Consensus 277 ~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 353 (405)
+..-.+. ++.+.|..+|+...+. .+.+...+...+......|+.+.|..+|++....... -....|...+..-...
T Consensus 476 A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~ 554 (679)
T 4e6h_A 476 AYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKV 554 (679)
T ss_dssp HHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Confidence 4333344 5599999999999886 3567777788888888899999999999999886432 1456788888888899
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 035749 354 GKMDKAHDLFLDMEAKGVAPDCVAFNTLML 383 (405)
Q Consensus 354 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 383 (405)
|+.+.+.++.+++.+. .|+......++.
T Consensus 555 G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ 582 (679)
T 4e6h_A 555 GSLNSVRTLEKRFFEK--FPEVNKLEEFTN 582 (679)
T ss_dssp CCSHHHHHHHHHHHHH--STTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCCcHHHHHHH
Confidence 9999999999999986 344333334433
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.61 E-value=3.8e-13 Score=114.88 Aligned_cols=313 Identities=11% Similarity=-0.024 Sum_probs=216.1
Q ss_pred CCChhHHHHHHHHH--HhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHH--HHhcCChHHHH---------HH
Q 035749 16 EPNVITYSTLINGL--CRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDG--LCKEGFVDKAK---------EL 82 (405)
Q Consensus 16 ~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~---------~~ 82 (405)
.|+..+-..+-..| ...+++++|..+++++.+...... ...+...|..++.. ..-.+.+..+. +.
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~--~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~ 84 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQME--EDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTEL 84 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBC--CCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHH
Confidence 45555656666666 789999999999999866431100 11233344444432 11122333333 66
Q ss_pred HHHHHhCCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--C---ccHhhHHHHHHHHHcCCCHHHHHHHH
Q 035749 83 LLQMKDKNINPDV----VTYNSVIRGFCYANDSNEAKRLFIEMMDQGV--Q---PNVVTFSVIMDELCKNGKMEEASQLL 153 (405)
Q Consensus 83 ~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 153 (405)
++.+.....+.+. ..+......+...|++++|+..|++..+... . ....++..+..+|...|+++.|...+
T Consensus 85 l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~ 164 (378)
T 3q15_A 85 LETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHI 164 (378)
T ss_dssp HHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 6665432111111 1233455667889999999999999876421 1 13457788899999999999999999
Q ss_pred HHHHHcCC--C----CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC----CC-CChhhHHHHHHHHhhcCChHHHHHH
Q 035749 154 ELMIQIGV--R----PNAFVYNTLMDGFCLTGRVNRAKELFVSMESMG----CK-HNVFSYSILINGYCKNKEIEGALSL 222 (405)
Q Consensus 154 ~~~~~~~~--~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 222 (405)
++..+... . ....++..+..+|...|++++|...+++..+.. .+ ....++..+..+|...|++++|+..
T Consensus 165 ~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~ 244 (378)
T 3q15_A 165 LQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEH 244 (378)
T ss_dssp HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 98876411 1 124567889999999999999999999886531 11 1235678899999999999999999
Q ss_pred HHHHHh-----CCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcC----CCccHHHHHHHHHHHhcCCC---hHHHH
Q 035749 223 YSEMLS-----KGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHG----VAADTWAYRTFIDGLCKNGY---IVEAL 290 (405)
Q Consensus 223 ~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~a~ 290 (405)
+++... .. +....++..+...+...|++++|...+++..+.. .+.....+..+...+...++ ..+|+
T Consensus 245 ~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al 323 (378)
T 3q15_A 245 FQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLL 323 (378)
T ss_dssp HHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 999887 42 2336678888999999999999999999988642 12233456666677778888 77777
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 035749 291 ELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPR 333 (405)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 333 (405)
..++.... .+.....+..++..|...|++++|...|++..+
T Consensus 324 ~~~~~~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 324 SYFEKKNL--HAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCC--hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77776321 123345677899999999999999999988754
No 77
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.59 E-value=9.7e-14 Score=126.60 Aligned_cols=168 Identities=12% Similarity=0.045 Sum_probs=151.7
Q ss_pred CCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 035749 16 EPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDV 95 (405)
Q Consensus 16 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 95 (405)
|.++.+|+.+...+.+.|++++|++.|+++++.. |.+..++..+..++.+.|++++|+..|++..+.+ +.+.
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-------P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~ 77 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFA 77 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH
Confidence 4457789999999999999999999999999976 5678899999999999999999999999998875 5578
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 035749 96 VTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGF 175 (405)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (405)
..|..+..++...|++++|++.|++.++.... +..++..+..++...|++++|+..|++.++.. +.+...+..+..++
T Consensus 78 ~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l 155 (723)
T 4gyw_A 78 DAYSNMGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCL 155 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHH
Confidence 99999999999999999999999999987544 68889999999999999999999999999985 56788999999999
Q ss_pred HccCCHHHHHHHHHHHHh
Q 035749 176 CLTGRVNRAKELFVSMES 193 (405)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~ 193 (405)
...|++++|.+.++++.+
T Consensus 156 ~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 156 QIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHTTCCTTHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHH
Confidence 999999999999888765
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.59 E-value=2.8e-12 Score=109.34 Aligned_cols=272 Identities=11% Similarity=0.010 Sum_probs=179.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHh----hHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CCCH----HHH
Q 035749 98 YNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVV----TFSVIMDELCKNGKMEEASQLLELMIQIGV-RPNA----FVY 168 (405)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~ 168 (405)
.......+...|++++|...+++........+.. .+..+...+...|++++|...+++..+... ..+. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3445556677899999999998887754322221 455666777888999999988888765421 1111 234
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhc----CCC--C-ChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCC--C--chhh
Q 035749 169 NTLMDGFCLTGRVNRAKELFVSMESM----GCK--H-NVFSYSILINGYCKNKEIEGALSLYSEMLSKGIK--P--TVVT 237 (405)
Q Consensus 169 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~~~ 237 (405)
..+...+...|++++|...+++.... +.+ | ....+..+...+...|++++|...+++....... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 56777888889999998888887653 211 2 2345666777888889999998888887764211 1 1235
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHcCCCc-c-HHHHH----HHHHHHhcCCChHHHHHHHHHHHhcCCCc---cHHHH
Q 035749 238 YNTLFIGLFEIHQVERAFKLFDEMQRHGVAA-D-TWAYR----TFIDGLCKNGYIVEALELFRTLRILKCEL---DIRSY 308 (405)
Q Consensus 238 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~-~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~ 308 (405)
+..+...+...|++++|...+++.......+ . ..... ..+..+...|++++|...++........+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 6667777888888888888888876531111 1 11111 22344667888888888888876543211 13345
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhccCC----CcCccH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 309 SCLIDGLCKSGRLKIAWELFHSLPRG----VLIADV-VTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 309 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
..+...+...|++++|...++..... +..++. ..+..+..++...|++++|...+++....
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 66777888888888888888776432 111222 35666677788888888888888888775
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.58 E-value=2.3e-13 Score=124.13 Aligned_cols=169 Identities=13% Similarity=0.029 Sum_probs=153.5
Q ss_pred ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHH
Q 035749 56 CKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSV 135 (405)
Q Consensus 56 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (405)
.|.++.+++.+..++.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++++|+..|++.++.... +..+|..
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~n 82 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSN 82 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 46678899999999999999999999999999874 557899999999999999999999999999987543 6889999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCC
Q 035749 136 IMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKE 215 (405)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 215 (405)
+..++...|++++|++.|++.++.. +.+...+..+..++...|++++|+..|+++.+.. +.+...+..+..++...|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhccc
Confidence 9999999999999999999999985 5678899999999999999999999999999885 5678899999999999999
Q ss_pred hHHHHHHHHHHHh
Q 035749 216 IEGALSLYSEMLS 228 (405)
Q Consensus 216 ~~~a~~~~~~~~~ 228 (405)
+++|.+.++++.+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988765
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.58 E-value=6.2e-13 Score=104.95 Aligned_cols=197 Identities=12% Similarity=0.040 Sum_probs=155.4
Q ss_pred CCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 035749 16 EPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDV 95 (405)
Q Consensus 16 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 95 (405)
+.++..+......+...|++++|+..|+++++.. .+++...+..+..++...|++++|+..+++..+.. |.+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~ 76 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT------NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLA 76 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT------TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc------CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchH
Confidence 3466888999999999999999999999999876 23677888889999999999999999999999875 5567
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccH-------hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC--CHH
Q 035749 96 VTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNV-------VTFSVIMDELCKNGKMEEASQLLELMIQIGVRP--NAF 166 (405)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~ 166 (405)
..+..+..++...|++++|+..+++..+..+. +. ..|..+...+...|++++|+..++++++.. +. +..
T Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 154 (228)
T 4i17_A 77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTD 154 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHH
Confidence 88999999999999999999999999886433 44 457788888999999999999999998873 33 456
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 035749 167 VYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK 229 (405)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (405)
.+..+..++...| ...++.+...+ ..+...+.... ....+.+++|+..+++..+.
T Consensus 155 ~~~~l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 155 ALYSLGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 7777777776544 34455555553 33344444333 23456689999999999886
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.57 E-value=5.1e-12 Score=107.75 Aligned_cols=234 Identities=9% Similarity=0.003 Sum_probs=128.3
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHcCCCCCccccccc----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC--
Q 035749 22 YSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPD----AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNI-NPD-- 94 (405)
Q Consensus 22 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~-- 94 (405)
+......+...|++++|...+++++...+ ..+ ..++..+...+...|++++|...+++...... ..+
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 90 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELP------PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH 90 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCC------TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCC------CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHH
Confidence 34455566778888888888888777542 111 22566667777778888888888877654310 011
Q ss_pred --hHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--c-cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC--
Q 035749 95 --VVTYNSVIRGFCYANDSNEAKRLFIEMMDQ----GVQ--P-NVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRP-- 163 (405)
Q Consensus 95 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-- 163 (405)
..++..+...+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++........
T Consensus 91 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 170 (373)
T 1hz4_A 91 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 170 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc
Confidence 123455666777778888777777776542 111 1 23344556666777777777777777766542111
Q ss_pred --CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC-hhhHH-----HHHHHHhhcCChHHHHHHHHHHHhCCCCCc-
Q 035749 164 --NAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHN-VFSYS-----ILINGYCKNKEIEGALSLYSEMLSKGIKPT- 234 (405)
Q Consensus 164 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~- 234 (405)
...++..+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...+++.......+.
T Consensus 171 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 250 (373)
T 1hz4_A 171 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH 250 (373)
T ss_dssp GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcch
Confidence 123455566666666777777666666654311111 01111 122334556666666666665544321110
Q ss_pred --hhhHHHHHHHHHccccHHHHHHHHHHH
Q 035749 235 --VVTYNTLFIGLFEIHQVERAFKLFDEM 261 (405)
Q Consensus 235 --~~~~~~l~~~~~~~~~~~~a~~~~~~~ 261 (405)
...+..+...+...|++++|...++..
T Consensus 251 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 251 FLQGQWRNIARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 112233344444555555555555444
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.57 E-value=5.7e-13 Score=101.40 Aligned_cols=165 Identities=16% Similarity=0.152 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHH
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYN 99 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 99 (405)
..|..+...+...|++++|+..|+++.+.. +.+..++..++..+...|++++|...++++.+.. +.+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 80 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-------AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVAT 80 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 345556666666777777777776666543 3455666666666666777777777776666543 34556666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 035749 100 SVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTG 179 (405)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 179 (405)
.+...+...|++++|.+.++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+..++...|
T Consensus 81 ~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 158 (186)
T 3as5_A 81 VLGLTYVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMG 158 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcC
Confidence 666666666666666666666655422 245555556666666666666666666665553 334555555666666666
Q ss_pred CHHHHHHHHHHHHhc
Q 035749 180 RVNRAKELFVSMESM 194 (405)
Q Consensus 180 ~~~~a~~~~~~~~~~ 194 (405)
++++|...++.+.+.
T Consensus 159 ~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 159 RHEEALPHFKKANEL 173 (186)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc
Confidence 666666666655443
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.55 E-value=1.3e-12 Score=99.36 Aligned_cols=167 Identities=18% Similarity=0.069 Sum_probs=130.5
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHH
Q 035749 59 DAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMD 138 (405)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (405)
....+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~ 84 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 45677788888888899999999888887653 45677888888888888888888888888877633 35677777888
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHH
Q 035749 139 ELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEG 218 (405)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (405)
.+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888887764 5566777778888888888888888888877764 4566777777888888888888
Q ss_pred HHHHHHHHHhC
Q 035749 219 ALSLYSEMLSK 229 (405)
Q Consensus 219 a~~~~~~~~~~ 229 (405)
|...++++...
T Consensus 163 A~~~~~~~~~~ 173 (186)
T 3as5_A 163 ALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 88888777654
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.55 E-value=3e-12 Score=100.99 Aligned_cols=153 Identities=14% Similarity=-0.021 Sum_probs=103.2
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHH
Q 035749 57 KPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVI 136 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (405)
+.++..+......+...|++++|+..|++..+...+++...+..+..++...|++++|+..|++..+..+. +...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence 44567777777778888888888888887777653256666767777777778888888888777766433 56667777
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC--ChhhHHHHH
Q 035749 137 MDELCKNGKMEEASQLLELMIQIGVRPNA-------FVYNTLMDGFCLTGRVNRAKELFVSMESMGCKH--NVFSYSILI 207 (405)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 207 (405)
..++...|++++|...+++..+.. +.+. ..|..+...+...|++++|...++++.+.. +. +...+..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHH
Confidence 777777777777777777777663 3334 345566666666677777777777666553 22 344555555
Q ss_pred HHHhh
Q 035749 208 NGYCK 212 (405)
Q Consensus 208 ~~~~~ 212 (405)
.+|..
T Consensus 161 ~~~~~ 165 (228)
T 4i17_A 161 VLFYN 165 (228)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.49 E-value=5.1e-13 Score=109.10 Aligned_cols=227 Identities=11% Similarity=0.012 Sum_probs=156.7
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCC-cccccccHHHHHHHHHHHHhcCChHHHH
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEF-GVVCKPDAVIYTTIIDGLCKEGFVDKAK 80 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (405)
+|+++++.+.....+....++..+...+...|++++|+..|+++++..... +...+....++..+..++...|++++|.
T Consensus 26 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 105 (283)
T 3edt_B 26 QALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 105 (283)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHH
Confidence 344444444433323456688999999999999999999999988651000 0002445778999999999999999999
Q ss_pred HHHHHHHhC------C-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-CCccHhhHHHHHHHHHcCCCH
Q 035749 81 ELLLQMKDK------N-INPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQ------G-VQPNVVTFSVIMDELCKNGKM 146 (405)
Q Consensus 81 ~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~ 146 (405)
+.+++..+. . .+....++..+...+...|++++|...++++.+. + .+....++..+..++...|++
T Consensus 106 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 185 (283)
T 3edt_B 106 PLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY 185 (283)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH
Confidence 999998764 1 1334677889999999999999999999998765 1 122456788899999999999
Q ss_pred HHHHHHHHHHHHc-------CCCC-CHHHHHHHHHHHHccCCH------HHHHHHHHHHHhcCCCCChhhHHHHHHHHhh
Q 035749 147 EEASQLLELMIQI-------GVRP-NAFVYNTLMDGFCLTGRV------NRAKELFVSMESMGCKHNVFSYSILINGYCK 212 (405)
Q Consensus 147 ~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (405)
++|...++++.+. ...+ ....+..+...+...+.. ..+...++..... .+....++..+...|..
T Consensus 186 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~ 264 (283)
T 3edt_B 186 QDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTVNTTLRSLGALYRR 264 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHH
Confidence 9999999998764 1122 223344444444333332 2222222222211 13345678889999999
Q ss_pred cCChHHHHHHHHHHHhC
Q 035749 213 NKEIEGALSLYSEMLSK 229 (405)
Q Consensus 213 ~~~~~~a~~~~~~~~~~ 229 (405)
.|++++|...+++..+.
T Consensus 265 ~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 265 QGKLEAAHTLEDCASRN 281 (283)
T ss_dssp TTCHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999998763
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.49 E-value=1.1e-12 Score=107.15 Aligned_cols=234 Identities=13% Similarity=0.017 Sum_probs=162.7
Q ss_pred HhcCchHHHHHHHHHHHcCCCCCc-ccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------C-CCCChHHHHHH
Q 035749 30 CRTGHTIVALNLFEEMINGNGEFG-VVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK------N-INPDVVTYNSV 101 (405)
Q Consensus 30 ~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l 101 (405)
...|++++|+..|+++++...... ...+....++..+...+...|++++|+..++++.+. + .+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 456777777777777665210000 002446778999999999999999999999998754 1 13346678899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC------C-CCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc------C-CCCCHHH
Q 035749 102 IRGFCYANDSNEAKRLFIEMMDQ------G-VQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI------G-VRPNAFV 167 (405)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~ 167 (405)
...+...|++++|...+++.... . .+....++..+...+...|++++|...++++.+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 1 1234677888999999999999999999998875 1 1223567
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcC-------C-CCChhhHHHHHHHHhhcCChHHHHH------HHHHHHhCCCCC
Q 035749 168 YNTLMDGFCLTGRVNRAKELFVSMESMG-------C-KHNVFSYSILINGYCKNKEIEGALS------LYSEMLSKGIKP 233 (405)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~-~~~~~~~~~l~~~~~~~~~~~~a~~------~~~~~~~~~~~~ 233 (405)
+..+..++...|++++|...++++.+.. . +.....+..+...+...+....+.. .+..... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 8889999999999999999999987641 1 1223334444444443333322222 2221111 1122
Q ss_pred chhhHHHHHHHHHccccHHHHHHHHHHHHHc
Q 035749 234 TVVTYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (405)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (405)
...++..+...+...|++++|...+++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3457788899999999999999999988754
No 87
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.44 E-value=5.5e-10 Score=97.94 Aligned_cols=356 Identities=9% Similarity=-0.060 Sum_probs=208.5
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhC-CC-CCChHH
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGF-VDKAKELLLQMKDK-NI-NPDVVT 97 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~ 97 (405)
+|...+..+-. |+++.+..+|++++.. .|+...|...+....+.+. .+....+|+..... |. +.+...
T Consensus 17 vyer~l~~~P~-~~~e~~~~iferal~~--------~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~i 87 (493)
T 2uy1_A 17 IMEHARRLYMS-KDYRSLESLFGRCLKK--------SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGL 87 (493)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHSTT--------CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHH
T ss_pred HHHHHHHHCCC-CCHHHHHHHHHHHhcc--------CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHH
Confidence 34444444433 7888888899888874 3578888888877777663 35566777776653 32 346677
Q ss_pred HHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHc-------------CCCHHHHHHHHHHHHHcC
Q 035749 98 YNSVIRGFC----YANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCK-------------NGKMEEASQLLELMIQIG 160 (405)
Q Consensus 98 ~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~~ 160 (405)
|...+..+. ..++.+.+.++|++.+......-...|......-.. .+.+..|..+++.+...-
T Consensus 88 W~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~ 167 (493)
T 2uy1_A 88 YKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLI 167 (493)
T ss_dssp HHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 777776543 245677888888888864221111222222111100 112233344444433210
Q ss_pred CCCCHHHHHHHHHHHHccC----C---HHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCC
Q 035749 161 VRPNAFVYNTLMDGFCLTG----R---VNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP 233 (405)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~----~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 233 (405)
-..+...|...+..-...+ + .+.+..+|+++.... +.++..|...+..+.+.|+.+.|..++++.... |
T Consensus 168 ~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P 243 (493)
T 2uy1_A 168 RGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---S 243 (493)
T ss_dssp HTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C
T ss_pred hhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---C
Confidence 0113345555555432211 1 345677888887754 566778888888888899999999999998886 3
Q ss_pred chhhHHHHHHHHHccccHHHHHHHHHHHHHcC------------CCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCC
Q 035749 234 TVVTYNTLFIGLFEIHQVERAFKLFDEMQRHG------------VAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKC 301 (405)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 301 (405)
....+.. .|....+.++. ++.+...- .......+...+....+.++.+.|..+|+++ ...
T Consensus 244 ~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~- 315 (493)
T 2uy1_A 244 DGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE- 315 (493)
T ss_dssp CSSHHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-
T ss_pred CcHHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-
Confidence 3332211 12211111111 22222110 0111234555566666678899999999988 322
Q ss_pred CccHHHHHHHHHHHHhcC-CHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 035749 302 ELDIRSYSCLIDGLCKSG-RLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNT 380 (405)
Q Consensus 302 ~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 380 (405)
+.+..+|...+..-...+ +++.|..+|+...+.. +.++..|...+......|+.+.|..+|+++. .....|..
T Consensus 316 ~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~ 389 (493)
T 2uy1_A 316 GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDS 389 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHH
T ss_pred CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHH
Confidence 234455544333333333 6899999998877642 2234556667777778899999999998873 24667777
Q ss_pred HHHHHHccCchhHHHHHHHHhhh
Q 035749 381 LMLGCIRNNETSKVVELLHRMDE 403 (405)
Q Consensus 381 l~~~~~~~g~~~~a~~~~~~~~~ 403 (405)
.+..-...|+.+.+..++++..+
T Consensus 390 ~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 390 MIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777778999888888887653
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.43 E-value=1.8e-11 Score=98.75 Aligned_cols=191 Identities=8% Similarity=-0.079 Sum_probs=120.3
Q ss_pred CCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CC
Q 035749 16 EPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNI--NP 93 (405)
Q Consensus 16 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~ 93 (405)
+.+...+..+...+.+.|++++|+..|+++++..+. .+....++..+..++.+.|++++|+..|+++.+... +.
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT----HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC----CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 345667788888899999999999999999987521 011267888999999999999999999999987631 12
Q ss_pred ChHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCH
Q 035749 94 DVVTYNSVIRGFCY--------ANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNA 165 (405)
Q Consensus 94 ~~~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 165 (405)
....+..+..++.. .|++++|+..|+++++..+. +......+... ..+... ..
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~--------------~~~~~~----~~ 148 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKI--------------RELRAK----LA 148 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHH--------------HHHHHH----HH
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHH--------------HHHHHH----HH
Confidence 24567778888888 89999999999998876322 22222111000 000000 01
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC--ChhhHHHHHHHHhhc----------CChHHHHHHHHHHHhC
Q 035749 166 FVYNTLMDGFCLTGRVNRAKELFVSMESMGCKH--NVFSYSILINGYCKN----------KEIEGALSLYSEMLSK 229 (405)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~ 229 (405)
..+..+..+|...|++++|+..|+.+.+..... ....+..+..+|... |++++|...|+++.+.
T Consensus 149 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 149 RKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 113445556666666666666666665542111 223455555555544 5666666666666654
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.42 E-value=2e-11 Score=100.04 Aligned_cols=241 Identities=12% Similarity=0.028 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHCCCCccHhhHHHHHHHHHcC-C-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 035749 113 EAKRLFIEMMDQGVQPNVVTFSVIMDELCKN-G-KMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVS 190 (405)
Q Consensus 113 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 190 (405)
+|.+++.+..+. .+++...| .+ +... + ++++|...+++. +..|...|++++|...|.+
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~~---~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~ 62 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-KL---FSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLK 62 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-HH---HSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-hh---cCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHH
Confidence 566777777665 23222223 22 2221 2 488888888776 3456778999999999888
Q ss_pred HHhc----CCCC-ChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCC---CC--chhhHHHHHHHHHcc-ccHHHHHHHHH
Q 035749 191 MESM----GCKH-NVFSYSILINGYCKNKEIEGALSLYSEMLSKGI---KP--TVVTYNTLFIGLFEI-HQVERAFKLFD 259 (405)
Q Consensus 191 ~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-~~~~~a~~~~~ 259 (405)
..+. +.++ ...+|+.+..+|...|++++|+..+++.+.... .+ ...++..+...|... |++++|+..|+
T Consensus 63 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~ 142 (292)
T 1qqe_A 63 AADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYE 142 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 7654 2111 245788888899999999999999988776310 11 134677778888885 88888888888
Q ss_pred HHHHcCCCc-c----HHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccH------HHHHHHHHHHHhcCCHHHHHHHH
Q 035749 260 EMQRHGVAA-D----TWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDI------RSYSCLIDGLCKSGRLKIAWELF 328 (405)
Q Consensus 260 ~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~ 328 (405)
+..+..... + ..++..+...+...|++++|+..++++......... ..+..++.++...|++++|...|
T Consensus 143 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 222 (292)
T 1qqe_A 143 LAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTL 222 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 877642100 1 345677788888888888888888888775422211 25677777888888888888888
Q ss_pred hhccCCCcCccHH------HHHHHHHHHH--cCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 035749 329 HSLPRGVLIADVV------TYNIMIHALC--ADGKMDKAHDLFLDMEAKGVAPDCVAFN 379 (405)
Q Consensus 329 ~~~~~~~~~~~~~------~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 379 (405)
++..+. .|+.. .+..++.++. ..+++++|+..|+++. ..++..-.
T Consensus 223 ~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~----~l~~~~~~ 275 (292)
T 1qqe_A 223 QEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM----RLDKWKIT 275 (292)
T ss_dssp HGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS----CCCHHHHH
T ss_pred HHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC----ccHHHHHH
Confidence 888764 23211 2334455554 3456777777775554 34665433
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.42 E-value=2.6e-10 Score=91.60 Aligned_cols=245 Identities=11% Similarity=0.025 Sum_probs=155.2
Q ss_pred HHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 035749 26 INGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGF 105 (405)
Q Consensus 26 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 105 (405)
++-..-.|++..++.-. .+..+ .........+.++++..|++... ....|....+..+...+
T Consensus 20 ikn~fy~G~yq~~i~e~---~~~~~------~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~ 81 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEI---EKFSK------VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL 81 (310)
T ss_dssp HHHHHTTTCHHHHTHHH---HTSSC------CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHH---HhcCc------cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh
Confidence 56667788998888733 32221 11223444456777878877642 11233433444444433
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccCCHHHH
Q 035749 106 CYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGV-RPNAFVYNTLMDGFCLTGRVNRA 184 (405)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a 184 (405)
..+ |+..++++...+ .++..++..+..++...|++++|++++.+.+..+. .-+...+...+.++.+.|+.+.|
T Consensus 82 -~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A 155 (310)
T 3mv2_B 82 -DTK----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTA 155 (310)
T ss_dssp -TTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred -ccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHH
Confidence 322 677777776654 34555556777888888888888888888776642 13566777788888888888888
Q ss_pred HHHHHHHHhcCCCC-----ChhhHHHHHHH--Hh--hcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHH
Q 035749 185 KELFVSMESMGCKH-----NVFSYSILING--YC--KNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAF 255 (405)
Q Consensus 185 ~~~~~~~~~~~~~~-----~~~~~~~l~~~--~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 255 (405)
.+.++.|.+. .| +..+...++.+ .. ..+++.+|..+|+++... .|+..+...++.++...|++++|.
T Consensus 156 ~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe 231 (310)
T 3mv2_B 156 STIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQ 231 (310)
T ss_dssp HHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHH
Confidence 8888888776 44 24444444444 22 233788888888887665 344333334444778888888888
Q ss_pred HHHHHHHHcC---------CCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC
Q 035749 256 KLFDEMQRHG---------VAADTWAYRTFIDGLCKNGYIVEALELFRTLRILK 300 (405)
Q Consensus 256 ~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 300 (405)
..++.+.+.. -+.++.++..++......|+ +|.++++++.+..
T Consensus 232 ~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 232 GIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 8888665421 14466666566555555666 7778888887764
No 91
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.42 E-value=1.8e-11 Score=94.80 Aligned_cols=115 Identities=14% Similarity=0.120 Sum_probs=66.7
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHH----------------HHHHHHhcCChHHHHH
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTT----------------IIDGLCKEGFVDKAKE 81 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~ 81 (405)
+...+......+...|++++|+..|+++++.+ |.++..|.. +..++.+.|++++|+.
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-------IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 34455666778889999999999999999865 344555655 5555555555555555
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHH
Q 035749 82 LLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELC 141 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (405)
.|++..+.. |.+...+..+..++...|++++|+..|++.++..+. +..++..+..++.
T Consensus 76 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~ 133 (208)
T 3urz_A 76 FYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 555554442 334445555555555555555555555555444222 3444444444443
No 92
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.40 E-value=6.3e-12 Score=115.29 Aligned_cols=174 Identities=10% Similarity=-0.005 Sum_probs=147.1
Q ss_pred HhcCchHHHHHHHHHHH--------cCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHH
Q 035749 30 CRTGHTIVALNLFEEMI--------NGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSV 101 (405)
Q Consensus 30 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 101 (405)
...|++++|++.+++++ +.. +.+...+..+...+...|++++|+..|+++.+.+ +.+...|..+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-------p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~l 473 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-------SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYR 473 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-------ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHH
Confidence 78999999999999998 543 5677899999999999999999999999998864 5678899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 035749 102 IRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181 (405)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 181 (405)
..++...|++++|+..|++.++..+. +...+..+..++...|++++ +..|+++++.+ +.+...+..+..++...|++
T Consensus 474 g~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~ 550 (681)
T 2pzi_A 474 AVAELLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDR 550 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999987543 67788889999999999999 99999999875 56778899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCC
Q 035749 182 NRAKELFVSMESMGCKHNVFSYSILINGYCKNKE 215 (405)
Q Consensus 182 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 215 (405)
++|...|+++.+.+ +.+...+..+..++...++
T Consensus 551 ~~A~~~~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 551 VGAVRTLDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 99999999988764 4456677777777766555
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.40 E-value=1.9e-10 Score=92.42 Aligned_cols=249 Identities=10% Similarity=0.013 Sum_probs=161.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 035749 102 IRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181 (405)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 181 (405)
++-..-.|.+..++.-. .+............+.+++...|++... ..-.|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT--
T ss_pred HHHHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc--
Confidence 34455678888887733 2222222223334456777777776531 11234443444444433 322
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCC-CCchhhHHHHHHHHHccccHHHHHHHHHH
Q 035749 182 NRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGI-KPTVVTYNTLFIGLFEIHQVERAFKLFDE 260 (405)
Q Consensus 182 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 260 (405)
++..++++.+.+ +++..++..+..++...|++++|++++.+.+..+. .-+...+...+..+.+.|+.+.|.+.++.
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 677777776654 45566666888888888999999999988877643 23556777788888899999999999998
Q ss_pred HHHcCCCc-----cHHHHHHHHHHH--hcCC--ChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 035749 261 MQRHGVAA-----DTWAYRTFIDGL--CKNG--YIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSL 331 (405)
Q Consensus 261 ~~~~~~~~-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 331 (405)
|.+. .| +..+...++.++ ...| ++.+|..+|+++... .|+......+..++...|++++|.+.++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8775 45 355556666553 2233 888999999998665 344233333334788889999999998876
Q ss_pred cCCC---------cCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH
Q 035749 332 PRGV---------LIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCV 376 (405)
Q Consensus 332 ~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 376 (405)
.+.. -+.++.++..++......|+ +|.+++.++.+. .|+..
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp 287 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHA 287 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCH
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCCh
Confidence 5421 13366677667766666776 888888888885 45443
No 94
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.39 E-value=1.2e-10 Score=90.38 Aligned_cols=176 Identities=11% Similarity=-0.009 Sum_probs=118.6
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcC----ChH
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEG----FVD 77 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~ 77 (405)
+|++.|+...+.| ++.++..+...+...+++++|+.+|+++.+.+ ++..+..+...|.. + +++
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---------~~~a~~~lg~~y~~-~g~~~~~~ 70 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---------DGDALALLAQLKIR-NPQQADYP 70 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHTTS-STTSCCHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHc-CCCCCCHH
Confidence 5777777777654 56677777777777788888888888877643 45666667766666 5 777
Q ss_pred HHHHHHHHHHhCCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-ccHhhHHHHHHHHHc----CCCHHH
Q 035749 78 KAKELLLQMKDKNINPDVVTYNSVIRGFCY----ANDSNEAKRLFIEMMDQGVQ-PNVVTFSVIMDELCK----NGKMEE 148 (405)
Q Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~ 148 (405)
+|+..|++..+.+ ++..+..|...|.. .+++++|+.+|++..+.+.. .+...+..+...|.. .+++++
T Consensus 71 ~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 147 (212)
T 3rjv_A 71 QARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVK 147 (212)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence 8888887777654 56677777777766 67777777777777766432 125566666666666 667777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-C-----CHHHHHHHHHHHHhcC
Q 035749 149 ASQLLELMIQIGVRPNAFVYNTLMDGFCLT-G-----RVNRAKELFVSMESMG 195 (405)
Q Consensus 149 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 195 (405)
|..+|++..+. +.+...+..+..+|... | ++++|..+|+...+.|
T Consensus 148 A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 148 ASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77777777665 22344555566665432 2 6777777777776665
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.38 E-value=8.2e-11 Score=94.82 Aligned_cols=212 Identities=9% Similarity=-0.022 Sum_probs=145.1
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--ccHh
Q 035749 57 KPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPD---VVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQ--PNVV 131 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~ 131 (405)
+.++..+..+...+.+.|++++|+..|+++.+.. |.+ ...+..+..++...|++++|+..|+++++..+. ....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 4567788888888888999999999999888763 333 667788888888899999999999888875321 1245
Q ss_pred hHHHHHHHHHc--------CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhH
Q 035749 132 TFSVIMDELCK--------NGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSY 203 (405)
Q Consensus 132 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 203 (405)
.+..+..++.. .|++++|...|+++++.. +.+......+.. +..+... ....+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~--------------~~~~~~~----~~~~~ 151 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQK--------------IRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHH--------------HHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHH--------------HHHHHHH----HHHHH
Confidence 56677777777 888888888888887763 222222222111 1111110 11225
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHhCCCCC--chhhHHHHHHHHHcc----------ccHHHHHHHHHHHHHcCCCcc--
Q 035749 204 SILINGYCKNKEIEGALSLYSEMLSKGIKP--TVVTYNTLFIGLFEI----------HQVERAFKLFDEMQRHGVAAD-- 269 (405)
Q Consensus 204 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~-- 269 (405)
..+...|.+.|++++|+..|++++...... ....+..+..++... |++++|...++++.+.. |.+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~ 230 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF-PDSPL 230 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC-TTCTH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC-CCChH
Confidence 677889999999999999999998863221 234677777888766 89999999999999864 222
Q ss_pred -HHHHHHHHHHHhcCCChHHH
Q 035749 270 -TWAYRTFIDGLCKNGYIVEA 289 (405)
Q Consensus 270 -~~~~~~l~~~~~~~~~~~~a 289 (405)
......+...+...++++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 23445555555555555544
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.36 E-value=6.2e-12 Score=91.75 Aligned_cols=146 Identities=10% Similarity=0.015 Sum_probs=98.2
Q ss_pred HHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 035749 25 LINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRG 104 (405)
Q Consensus 25 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (405)
|...+...|++++|+..++.+.... |.++..+..+...|.+.|++++|++.|++..+.. |.++.+|..+..+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-------p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 74 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-------RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLL 74 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-------HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4455566777888888888876643 3345566677778888888888888888877764 5567777778888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 035749 105 FCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQL-LELMIQIGVRPNAFVYNTLMDGFCLTGR 180 (405)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (405)
+...|++++|+..|++.++..+. +..++..+..++.+.|+++++.+. +++..+.. |.++.+|......+...|+
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 75 YELEENTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHcCchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 88888888888888777776433 566777777777777777655443 46666654 4455666666666555553
No 97
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.36 E-value=6.1e-11 Score=97.17 Aligned_cols=233 Identities=13% Similarity=0.033 Sum_probs=139.1
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHHHHHHHhc--C-chHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHH
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRT--G-HTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDK 78 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 78 (405)
+|.+++.+..+. .+++...| .+. +. + ++++|...|+++. ..+...|++++
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~~~----~~~~~~~~~~A~~~~~~a~---------------------~~~~~~g~~~~ 55 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-KLF----SGSDSYKFEEAADLCVQAA---------------------TIYRLRKELNL 55 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-HHH----SCCSHHHHHHHHHHHHHHH---------------------HHHHHTTCTHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-hhc----CCCCCccHHHHHHHHHHHH---------------------HHHHHcCCHHH
Confidence 566667666665 23322223 221 22 2 4667777666652 23556677777
Q ss_pred HHHHHHHHHhC----CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCc-cHhhHHHHHHHHHcC-CCHH
Q 035749 79 AKELLLQMKDK----NINP-DVVTYNSVIRGFCYANDSNEAKRLFIEMMDQG----VQP-NVVTFSVIMDELCKN-GKME 147 (405)
Q Consensus 79 a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~-~~~~ 147 (405)
|.+.|++..+. +.++ ...+|+.+..+|...|++++|+..|++.++.. -.. ...++..+..+|... |+++
T Consensus 56 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~ 135 (292)
T 1qqe_A 56 AGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYA 135 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHH
Confidence 77777765432 2111 14567777777777777777777777665431 110 134667777777775 8888
Q ss_pred HHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCh------hhHHHHHHHHhhcCCh
Q 035749 148 EASQLLELMIQIGVRP-N----AFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNV------FSYSILINGYCKNKEI 216 (405)
Q Consensus 148 ~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~ 216 (405)
+|+..+++.++..... + ..++..+...+...|++++|+..|++..+....... ..+..+..++...|++
T Consensus 136 ~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 215 (292)
T 1qqe_A 136 KAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA 215 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCH
Confidence 8888887776542100 1 345677777888888888888888887765422211 1456667777788888
Q ss_pred HHHHHHHHHHHhCCCCCch------hhHHHHHHHHH--ccccHHHHHHHHHHHHH
Q 035749 217 EGALSLYSEMLSKGIKPTV------VTYNTLFIGLF--EIHQVERAFKLFDEMQR 263 (405)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~~~~~~a~~~~~~~~~ 263 (405)
++|+..|++.... .|+. ..+..++.++. ..+++++|+..|+.+..
T Consensus 216 ~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 216 VAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 8888888877664 2221 12334445553 45667777777766654
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.36 E-value=1.2e-10 Score=90.22 Aligned_cols=125 Identities=13% Similarity=0.055 Sum_probs=67.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCC
Q 035749 136 IMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKE 215 (405)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 215 (405)
+..++...|++++|+..+++.++.. +.+...+..+..++...|++++|...|+++.+.. |.+..++..+...|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 5566666666666666666666654 4455666666666666666666666666666654 4455566666655544432
Q ss_pred --hHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHc
Q 035749 216 --IEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (405)
Q Consensus 216 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (405)
...+...+..... ..|....+.....++...|++++|...|+++++.
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 2333444443322 1222222333344445556666666666666554
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.36 E-value=1e-10 Score=83.61 Aligned_cols=130 Identities=13% Similarity=0.215 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHH
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNS 100 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (405)
+|..+...+...|++++|..+|+++.+.. +.+...+..++..+...|++++|...++++.+.+ +.+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 74 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYN 74 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-------CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHH
Confidence 45556666666666666666666666543 3345566666666666666666666666665543 334555556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 101 VIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
+...+...|++++|.+.++++.+... .+...+..+...+...|++++|...++.+.+.
T Consensus 75 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 75 LGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 66666666666666666666655422 23445555555555666666666665555543
No 100
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.35 E-value=7.5e-09 Score=90.78 Aligned_cols=342 Identities=12% Similarity=0.023 Sum_probs=218.0
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHH----hcCC
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGH-TIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLC----KEGF 75 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~ 75 (405)
+.|..+|++.+.. .|+...|...+....+.++ .+....+|+.++..-+. .+.+...|...+..+. .+++
T Consensus 31 e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~----d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 31 RSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFEN----YWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp HHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTT----CTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred HHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCC----CcccHHHHHHHHHHHHhchhhhHH
Confidence 3578899999885 5799999999988877764 45678889988865210 1456788888887654 3567
Q ss_pred hHHHHHHHHHHHhCCCCCC--hHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHH
Q 035749 76 VDKAKELLLQMKDKNINPD--VVTYNSVIRGFCY-------------ANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDEL 140 (405)
Q Consensus 76 ~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (405)
.+.+..+|++.... |+. ...|......-.. .+.+..|..+++.+...-...+...|...+..-
T Consensus 105 ~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E 182 (493)
T 2uy1_A 105 IEKIRNGYMRALQT--PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLE 182 (493)
T ss_dssp HHHHHHHHHHHHTS--CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 88999999999874 332 1222222211111 112333444454443210011333555554443
Q ss_pred HcC--CC-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhc
Q 035749 141 CKN--GK-----MEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKN 213 (405)
Q Consensus 141 ~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (405)
... |- .+.+..+|++++... +.+...|...+..+...|+.+.|..++++.... |.+...+.. |...
T Consensus 183 ~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~ 255 (493)
T 2uy1_A 183 MENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLV 255 (493)
T ss_dssp HTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHH
T ss_pred hcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhh
Confidence 222 11 355778999988864 667888988899899999999999999999987 444433332 2221
Q ss_pred CChHHHHHHHHHHHhC---C------CCC---chhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHh
Q 035749 214 KEIEGALSLYSEMLSK---G------IKP---TVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLC 281 (405)
Q Consensus 214 ~~~~~a~~~~~~~~~~---~------~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 281 (405)
.+.++. ++.+.+. . ..+ ....|...+....+.++.+.|..+|..+ ... ..+...+...+..-.
T Consensus 256 ~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~ 330 (493)
T 2uy1_A 256 MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEY 330 (493)
T ss_dssp TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHH
T ss_pred cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHH
Confidence 111222 2222211 0 001 1234555555566778899999999999 321 234444433333222
Q ss_pred cC-CChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHH
Q 035749 282 KN-GYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAH 360 (405)
Q Consensus 282 ~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 360 (405)
.. ++.+.|..+|+...+.. +.++..+...+......|+.+.|..+|+++.+ ....|...+..-...|+.+.+.
T Consensus 331 ~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r 404 (493)
T 2uy1_A 331 YATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFR 404 (493)
T ss_dssp HHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHH
Confidence 23 36999999999998763 34455667778878889999999999999843 5778888888777889999999
Q ss_pred HHHHHHHh
Q 035749 361 DLFLDMEA 368 (405)
Q Consensus 361 ~~~~~~~~ 368 (405)
.+++++..
T Consensus 405 ~v~~~~~~ 412 (493)
T 2uy1_A 405 ELVDQKMD 412 (493)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988874
No 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.34 E-value=4.9e-11 Score=97.34 Aligned_cols=167 Identities=15% Similarity=0.021 Sum_probs=107.8
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhh-HHH
Q 035749 57 KPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVT-FSV 135 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ 135 (405)
+.+...+..+...+...|++++|...|+++.+.. |.+...+..+...+...|++++|...++++.... |+... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 3455666667777777777777777777776653 4456677777777777777777777777765542 23222 222
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-CChhhHHHHHHHHhhcC
Q 035749 136 IMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCK-HNVFSYSILINGYCKNK 214 (405)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 214 (405)
....+...++.+.|...+++..+.. +.+...+..+...+...|++++|...|.++.+.... .+...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2223455566666777777776664 556667777777777777777777777777665311 12556777777777777
Q ss_pred ChHHHHHHHHHHH
Q 035749 215 EIEGALSLYSEML 227 (405)
Q Consensus 215 ~~~~a~~~~~~~~ 227 (405)
+.++|...|++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 7777777776654
No 102
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.34 E-value=1.1e-09 Score=88.91 Aligned_cols=217 Identities=13% Similarity=0.023 Sum_probs=164.4
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHHhcC--chHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHH----Hhc-
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTG--HTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGL----CKE- 73 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~- 73 (405)
++|+..++.++... |-+..+|+....++...| ++++++..++.++..+ |.+..+|+.-..++ ...
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-------Pk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-------EKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-------TTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-------cccHHHHHHHHHHHHHHHHhcc
Confidence 37889999998875 455678999999999999 9999999999999986 45566666665555 445
Q ss_pred --CChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCC----
Q 035749 74 --GFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSN--EAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGK---- 145 (405)
Q Consensus 74 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 145 (405)
+++++++.+++.+.+.. +-+..+|+.-...+...|.++ ++++.++++++..+. |..+|+.....+...+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCH
T ss_pred ccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchh
Confidence 78999999999998875 668888888888888888888 999999999887655 77788877777777666
Q ss_pred --HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH-HHHHHHHHHHhcC--CCCChhhHHHHHHHHhhcCChHHHH
Q 035749 146 --MEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVN-RAKELFVSMESMG--CKHNVFSYSILINGYCKNKEIEGAL 220 (405)
Q Consensus 146 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~ 220 (405)
++++++.++.++... +-|...|+.+...+.+.|+.. .+..+..++.+.+ .+.++..+..++..|.+.|+.++|.
T Consensus 200 ~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 788888888887775 667777777777777777633 3445555554432 1345667777777777777778888
Q ss_pred HHHHHHHh
Q 035749 221 SLYSEMLS 228 (405)
Q Consensus 221 ~~~~~~~~ 228 (405)
++++.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88877765
No 103
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.33 E-value=2.7e-10 Score=81.34 Aligned_cols=130 Identities=13% Similarity=0.211 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHH
Q 035749 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELC 141 (405)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (405)
.+..++..+...|++++|..+++++.+.+ +.+...+..++..+...|++++|...++++...+. .+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence 45666667777777777777777776553 34566666677777777777777777777665532 24555666666666
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 035749 142 KNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESM 194 (405)
Q Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (405)
..|++++|.+.++.+.+.. +.+...+..++.++...|++++|...++++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7777777777776666653 344555666666666666666666666666554
No 104
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.33 E-value=5e-09 Score=85.06 Aligned_cols=227 Identities=9% Similarity=-0.017 Sum_probs=154.6
Q ss_pred HHHHHhcCch-HHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCChHHHHHHH
Q 035749 26 INGLCRTGHT-IVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEG--FVDKAKELLLQMKDKNINPDVVTYNSVI 102 (405)
Q Consensus 26 ~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 102 (405)
+.+..+.|.+ ++|+..++.++..+ |.+..+|+.-..++...+ +++++++.++.+...+ |-+..+|+.-.
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~~n-------P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~ 110 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGINEL-------ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQ 110 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC-------cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHH
Confidence 3334455554 68999999999876 556778888888888888 8999999999988775 44566666554
Q ss_pred HHH----Hhc---CCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHH
Q 035749 103 RGF----CYA---NDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKME--EASQLLELMIQIGVRPNAFVYNTLMD 173 (405)
Q Consensus 103 ~~~----~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~ 173 (405)
..+ ... +++++++.+++.+.+..++ +..+|+.-..++.+.|.++ +++..++++++.+ +.+...|+....
T Consensus 111 ~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ 188 (306)
T 3dra_A 111 LIIGQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFF 188 (306)
T ss_dssp HHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 444 444 6788888888888877544 7777777777777777777 8888888888775 556777776666
Q ss_pred HHHccCC------HHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHH-HHHHHHHHHhCC--CCCchhhHHHHHHH
Q 035749 174 GFCLTGR------VNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEG-ALSLYSEMLSKG--IKPTVVTYNTLFIG 244 (405)
Q Consensus 174 ~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~ 244 (405)
.....+. ++++++.++.+.... +.+..+|+.+...+.+.|+... +..+..++...+ -+.+...+..++..
T Consensus 189 ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~ 267 (306)
T 3dra_A 189 LLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKI 267 (306)
T ss_dssp HHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHH
T ss_pred HHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHH
Confidence 6666665 777777777777665 5567777777666666665333 344444444321 12244455555556
Q ss_pred HHccccHHHHHHHHHHHHH
Q 035749 245 LFEIHQVERAFKLFDEMQR 263 (405)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~ 263 (405)
+.+.|+.++|.++++.+.+
T Consensus 268 ~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 268 YTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHccCCHHHHHHHHHHHHh
Confidence 6666666666666666654
No 105
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.32 E-value=6.2e-11 Score=108.74 Aligned_cols=174 Identities=9% Similarity=-0.069 Sum_probs=143.1
Q ss_pred HccCCHHHHHHHHHHHH--------hcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHc
Q 035749 176 CLTGRVNRAKELFVSME--------SMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFE 247 (405)
Q Consensus 176 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 247 (405)
...|++++|++.++++. +.. +.+...+..+...+...|++++|+..|+++.+.. +.+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 77899999999999987 443 5567788888999999999999999999998863 3366788888899999
Q ss_pred cccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 035749 248 IHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWEL 327 (405)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 327 (405)
.|++++|...|+++.+.. +.+...+..+..++.+.|++++ ...|+++.+.. +.+...+..++.++...|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998875 5567788889999999999999 99999998876 66788899999999999999999999
Q ss_pred HhhccCCCcCccHHHHHHHHHHHHcCCC
Q 035749 328 FHSLPRGVLIADVVTYNIMIHALCADGK 355 (405)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 355 (405)
|+++.+... .+...+..+..++...++
T Consensus 557 ~~~al~l~P-~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSR-HFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTST-THHHHHHHHHHHTC----
T ss_pred HHhhcccCc-ccHHHHHHHHHHHHccCC
Confidence 999987532 246777778888766555
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.32 E-value=7.9e-10 Score=85.77 Aligned_cols=176 Identities=13% Similarity=0.022 Sum_probs=110.3
Q ss_pred HHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCC----CHHHHHHHH
Q 035749 78 KAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNG----KMEEASQLL 153 (405)
Q Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 153 (405)
+|++.|++..+.| ++..+..+...+...+++++|+.+|++..+.| +...+..+...|.. + ++++|..+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4566666666654 66677777777777777777777777777654 44555666666665 5 677777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCC-CChhhHHHHHHHHhh----cCChHHHHHHHH
Q 035749 154 ELMIQIGVRPNAFVYNTLMDGFCL----TGRVNRAKELFVSMESMGCK-HNVFSYSILINGYCK----NKEIEGALSLYS 224 (405)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 224 (405)
++..+.+ +...+..+..+|.. .+++++|..+|++..+.+.. ..+.++..|...|.. .+++++|+..|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7776654 45566666666665 66777777777777665411 125566666666666 566777777777
Q ss_pred HHHhCCCCCchhhHHHHHHHHHcc-c-----cHHHHHHHHHHHHHcC
Q 035749 225 EMLSKGIKPTVVTYNTLFIGLFEI-H-----QVERAFKLFDEMQRHG 265 (405)
Q Consensus 225 ~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 265 (405)
+..+. ..+...+..+...|... | ++++|...|+...+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 76664 12333455555555432 2 5666666666666655
No 107
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.31 E-value=4.8e-10 Score=87.99 Aligned_cols=188 Identities=10% Similarity=-0.068 Sum_probs=125.3
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh--
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDV-- 95 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 95 (405)
++..+..+...+...|++++|+..|+++++..+. .+.....+..++.++.+.|++++|+..|+++.+.. |.+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~ 77 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPF----GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNI 77 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcH
Confidence 4456777888899999999999999999986521 11235688889999999999999999999998764 2222
Q ss_pred -HHHHHHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 035749 96 -VTYNSVIRGFCY------------------ANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELM 156 (405)
Q Consensus 96 -~~~~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 156 (405)
..+..+..++.. .|++++|...|+++++..+. +.......... ..+...+
T Consensus 78 ~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~ 146 (225)
T 2yhc_A 78 DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRL 146 (225)
T ss_dssp HHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHH
Confidence 245555555543 35666666666666654221 22221111000 0000000
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 035749 157 IQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHN---VFSYSILINGYCKNKEIEGALSLYSEMLSKG 230 (405)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 230 (405)
......+...+...|++++|...|+.+.+.. |.+ ...+..+..++.+.|++++|.+.++.+...+
T Consensus 147 --------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 --------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp --------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred --------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0112346678888999999999999988763 222 2467788889999999999999999888763
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.31 E-value=1.3e-10 Score=104.79 Aligned_cols=163 Identities=12% Similarity=0.013 Sum_probs=125.7
Q ss_pred cCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCH
Q 035749 32 TGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDS 111 (405)
Q Consensus 32 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 111 (405)
.|++++|++.|+++++.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++
T Consensus 2 ~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~ 73 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-------PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRH 73 (568)
T ss_dssp --------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCH
T ss_pred CccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 478999999999998875 5668899999999999999999999999999875 55788999999999999999
Q ss_pred HHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc---CCHHHHHHHH
Q 035749 112 NEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLT---GRVNRAKELF 188 (405)
Q Consensus 112 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~ 188 (405)
++|.+.+++..+.... +...+..+..++...|++++|.+.+++..+.. +.+...+..+..++... |++++|...+
T Consensus 74 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~ 151 (568)
T 2vsy_A 74 AEAAVLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQV 151 (568)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 9999999999987433 67888999999999999999999999999885 56778889999999999 9999999999
Q ss_pred HHHHhcCCCCChhhHHH
Q 035749 189 VSMESMGCKHNVFSYSI 205 (405)
Q Consensus 189 ~~~~~~~~~~~~~~~~~ 205 (405)
++..+.+ +.+...+..
T Consensus 152 ~~al~~~-p~~~~~~~~ 167 (568)
T 2vsy_A 152 RAAVAQG-VGAVEPFAF 167 (568)
T ss_dssp HHHHHHT-CCCSCHHHH
T ss_pred HHHHhcC-CcccChHHH
Confidence 9998875 333344433
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.30 E-value=2.8e-10 Score=92.86 Aligned_cols=168 Identities=10% Similarity=-0.030 Sum_probs=139.4
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHH-H
Q 035749 92 NPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYN-T 170 (405)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ 170 (405)
+.+...+..+...+...|++++|...|++.....+. +...+..+..++...|++++|...++++.... |+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 556777888999999999999999999999987544 77888999999999999999999999987763 4544333 3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCC-chhhHHHHHHHHHccc
Q 035749 171 LMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP-TVVTYNTLFIGLFEIH 249 (405)
Q Consensus 171 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 249 (405)
....+...++.++|...+++..... |.+...+..+...+...|++++|+..|.++++..... +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 3334667788888999999998875 6678899999999999999999999999999864221 2567889999999999
Q ss_pred cHHHHHHHHHHHHH
Q 035749 250 QVERAFKLFDEMQR 263 (405)
Q Consensus 250 ~~~~a~~~~~~~~~ 263 (405)
+.++|...+++...
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999999887654
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.30 E-value=5e-11 Score=89.69 Aligned_cols=162 Identities=15% Similarity=0.135 Sum_probs=98.3
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHH
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNS 100 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (405)
.+......+...|++++|+..|+++++.. |.+...+..+..++...|++++|+..++++.... |++..+..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~ 78 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-------QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSL 78 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHH
Confidence 45566777778888888888888877654 5567778888888888888888888888776553 24443332
Q ss_pred HHHH-HHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcc
Q 035749 101 VIRG-FCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRP-NAFVYNTLMDGFCLT 178 (405)
Q Consensus 101 l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 178 (405)
+... +...+...+|+..+++..+..+. +...+..+..++...|++++|...++++.+....+ +...+..+..++...
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~ 157 (176)
T 2r5s_A 79 IAKLELHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSAL 157 (176)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHh
Confidence 2211 11222223355666666554322 45556666666666666666666666666553211 234555666666666
Q ss_pred CCHHHHHHHHHHHH
Q 035749 179 GRVNRAKELFVSME 192 (405)
Q Consensus 179 ~~~~~a~~~~~~~~ 192 (405)
|+.++|...|++..
T Consensus 158 g~~~~A~~~y~~al 171 (176)
T 2r5s_A 158 GQGNAIASKYRRQL 171 (176)
T ss_dssp CSSCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 66666666665543
No 111
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.30 E-value=1.8e-11 Score=89.28 Aligned_cols=146 Identities=11% Similarity=-0.121 Sum_probs=101.8
Q ss_pred HHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC
Q 035749 241 LFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGR 320 (405)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 320 (405)
|...+...|++++|+..+....... +.++..+..+...|.+.|++++|...++++.+.. |.+..++..++.+|...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 4455566778888888887776542 2334456667778888888888888888887775 5677788888888888888
Q ss_pred HHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHccCc
Q 035749 321 LKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDL-FLDMEAKGVAPDCVAFNTLMLGCIRNNE 390 (405)
Q Consensus 321 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 390 (405)
+++|...|+++.+..+ -+..+|..+...|.+.|++++|.+. ++++.+. .+-++.+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l-~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL-FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH-STTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHhCc
Confidence 8888888888776422 2567788888888888888766554 5777775 23356666666666666664
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.24 E-value=3.4e-10 Score=102.07 Aligned_cols=150 Identities=8% Similarity=-0.041 Sum_probs=122.3
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHH
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAK 80 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (405)
++|++.|++..+.. +.+...|..+...+...|++++|++.|+++++.. +.+...+..+..++...|++++|.
T Consensus 6 ~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 6 PRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-------PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 47888999888764 4567889999999999999999999999999976 567889999999999999999999
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcC---CCHHHHHHHHHHHH
Q 035749 81 ELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKN---GKMEEASQLLELMI 157 (405)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~ 157 (405)
+.+++..+.. +.+...+..+..++...|++++|.+.|++..+.... +...+..+..++... |++++|.+.+++..
T Consensus 78 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 78 VLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 9999998874 557889999999999999999999999999887443 677888899999999 99999999999998
Q ss_pred HcC
Q 035749 158 QIG 160 (405)
Q Consensus 158 ~~~ 160 (405)
+.+
T Consensus 156 ~~~ 158 (568)
T 2vsy_A 156 AQG 158 (568)
T ss_dssp HHT
T ss_pred hcC
Confidence 875
No 113
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.24 E-value=9.3e-11 Score=88.20 Aligned_cols=164 Identities=13% Similarity=0.018 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHH-
Q 035749 61 VIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDE- 139 (405)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~- 139 (405)
..+..+...+...|++++|...|++..+.. |.+...+..+...+...|++++|+..+++.....+ +...+......
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~ 83 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLE 83 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHH
Confidence 345666777888888888888888876653 45677888888888888888888888888765532 33333222211
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHhhcCChHH
Q 035749 140 LCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKH-NVFSYSILINGYCKNKEIEG 218 (405)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 218 (405)
+...+....+...+++..+.. +.+...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 112122234566777776653 4456677777777777777777777777777654221 24466777777777777777
Q ss_pred HHHHHHHHHh
Q 035749 219 ALSLYSEMLS 228 (405)
Q Consensus 219 a~~~~~~~~~ 228 (405)
|...|++.+.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776543
No 114
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.23 E-value=3.2e-09 Score=83.28 Aligned_cols=188 Identities=8% Similarity=-0.073 Sum_probs=124.0
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccH--hhHH
Q 035749 59 DAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNIN-P-DVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNV--VTFS 134 (405)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 134 (405)
++..+..++..+.+.|++++|+..|+++.+.... + ....+..+..++.+.|++++|+..|+++++..+.... .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3556777788899999999999999999875311 1 1357888889999999999999999999876433111 2444
Q ss_pred HHHHHHHc------------------CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 035749 135 VIMDELCK------------------NGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGC 196 (405)
Q Consensus 135 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 196 (405)
.+..++.. .|++++|...|+++++.. |.+.......... ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l----------~~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL----------VFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH----------HHHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH----------HHHHHHH-----
Confidence 44545443 345566666666655542 1122111111100 0000000
Q ss_pred CCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCC--chhhHHHHHHHHHccccHHHHHHHHHHHHHcC
Q 035749 197 KHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP--TVVTYNTLFIGLFEIHQVERAFKLFDEMQRHG 265 (405)
Q Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 265 (405)
......+...|.+.|++++|+..|+++++..... ....+..+..++.+.|++++|...++.+...+
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0112356778999999999999999999863211 12467788999999999999999999988764
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.17 E-value=1.4e-09 Score=89.68 Aligned_cols=94 Identities=6% Similarity=-0.127 Sum_probs=41.7
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHcCC---Cc--cHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC----CCcc-HHH
Q 035749 238 YNTLFIGLFEIHQVERAFKLFDEMQRHGV---AA--DTWAYRTFIDGLCKNGYIVEALELFRTLRILK----CELD-IRS 307 (405)
Q Consensus 238 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~ 307 (405)
+..+...|.. |++++|+..+++..+... .+ ...++..+...+...|++++|+..++++.... ..+. ...
T Consensus 119 ~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 197 (307)
T 2ifu_A 119 LDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKK 197 (307)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHH
Confidence 3344444444 555555555544433210 00 02334444555555555555555555544321 0011 123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcc
Q 035749 308 YSCLIDGLCKSGRLKIAWELFHSLP 332 (405)
Q Consensus 308 ~~~l~~~~~~~~~~~~a~~~~~~~~ 332 (405)
+..++.++...|++++|...|++..
T Consensus 198 ~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 198 CIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 4444445555555666655555554
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.15 E-value=2.2e-09 Score=88.55 Aligned_cols=161 Identities=9% Similarity=-0.021 Sum_probs=74.7
Q ss_pred hcCchHHHHHHHHHHHcCCCC--Cc--ccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---C--CChHHHHHH
Q 035749 31 RTGHTIVALNLFEEMINGNGE--FG--VVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNI---N--PDVVTYNSV 101 (405)
Q Consensus 31 ~~~~~~~A~~~~~~~~~~~~~--~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~~l 101 (405)
..|++++|.++++++.+.... +. .....-...|...+..+...|++++|...|.+..+... . .-..+|..+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 356777888888777653210 00 00001122444445555566666666666665543210 0 012345555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCC-ccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC-----CHHHHHHH
Q 035749 102 IRGFCYANDSNEAKRLFIEMMDQ----GVQ-PNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRP-----NAFVYNTL 171 (405)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l 171 (405)
...|...|++++|+..|++.++. |-. ....++..+..+|.. |++++|+..+++.++..... ...++..+
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 161 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA 161 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 55566666666666666554432 100 012344444445544 55555555555544321000 02334444
Q ss_pred HHHHHccCCHHHHHHHHHHHH
Q 035749 172 MDGFCLTGRVNRAKELFVSME 192 (405)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~ 192 (405)
..++...|++++|+..|++..
T Consensus 162 g~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 162 SRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 445555555555555555443
No 117
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.15 E-value=1.7e-09 Score=75.95 Aligned_cols=97 Identities=12% Similarity=0.103 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHH
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYN 99 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 99 (405)
..+......+.+.|++++|++.|+++++.+ |.++.+|..+..++.+.|++++|+..+++.++.+ +.+...|.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~ 85 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-------PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYI 85 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHH
Confidence 345556666666666666666666666554 3455566666666666666666666666665543 34455566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 100 SVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
.+..++...|++++|++.|++.++.
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6666666666666666666666554
No 118
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.13 E-value=9.5e-10 Score=89.38 Aligned_cols=195 Identities=11% Similarity=-0.034 Sum_probs=115.2
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHH
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVT 97 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (405)
+...+..+...+...|++++|+..|+++++.. |.+...|..+..++.+.|++++|+..+++..+.. +.+...
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 74 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-------PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKA 74 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHH
Confidence 45667778888888888888888888888765 4567788888888888888888888888887764 556777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 035749 98 YNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCL 177 (405)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (405)
+..+..++...|++++|...|++..+..+. +...+...+....+ ..+... +........+.+......+... .
T Consensus 75 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~ 147 (281)
T 2c2l_A 75 HFFLGQCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRL--I 147 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHH--H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHH--H
Confidence 888888888888888888888877664211 11111111111111 111111 1112222334444443333322 2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhc-CChHHHHHHHHHHHh
Q 035749 178 TGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKN-KEIEGALSLYSEMLS 228 (405)
Q Consensus 178 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 228 (405)
.|++++|.+.++...+.. +.+......+...+.+. +.+++|.++|.++.+
T Consensus 148 ~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 148 AAERERELEECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHHTTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 466677777666665542 22233333333333333 455666666666544
No 119
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.13 E-value=1.1e-07 Score=78.00 Aligned_cols=183 Identities=9% Similarity=-0.018 Sum_probs=133.7
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCChHHHHH
Q 035749 22 YSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEG-FVDKAKELLLQMKDKNINPDVVTYNS 100 (405)
Q Consensus 22 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (405)
+..+-......+..++|++++++++..+ |.+..+|+.-..++...| .+++++..++.+...+ |-+..+|+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-------P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~h 128 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-------PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHH 128 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-------chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 3433344445555678999999999876 556778888888888888 5999999999999875 557788887
Q ss_pred HHHHHHhc-C-CHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHH--------HHHHHHHHHHHcCCCCCHHHHHH
Q 035749 101 VIRGFCYA-N-DSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKME--------EASQLLELMIQIGVRPNAFVYNT 170 (405)
Q Consensus 101 l~~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~ 170 (405)
-...+... + +++++++.++.+++...+ |..+|+....++.+.|.++ ++++.++++++.. +.+...|+.
T Consensus 129 R~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~ 206 (349)
T 3q7a_A 129 RLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGW 206 (349)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 77777666 6 888999999999887544 7777776665555555554 7888888888875 567777877
Q ss_pred HHHHHHccCC-------HHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCC
Q 035749 171 LMDGFCLTGR-------VNRAKELFVSMESMGCKHNVFSYSILINGYCKNKE 215 (405)
Q Consensus 171 l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 215 (405)
....+.+.++ ++++++.++++.... +.+...|+-+-..+.+.|+
T Consensus 207 R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 207 RWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 7777777665 577778887777764 5566777666655555554
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.13 E-value=3.3e-09 Score=74.47 Aligned_cols=111 Identities=10% Similarity=-0.027 Sum_probs=81.7
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHH
Q 035749 59 DAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMD 138 (405)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (405)
....+...+..+.+.|++++|++.|++..+.. |.+..+|..+..++...|++++|+..|++.++.++. +...|..+..
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~ 89 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHH
Confidence 45677778888888888888888888877764 556777888888888888888888888887776433 5667777777
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 035749 139 ELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLM 172 (405)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 172 (405)
++...|++++|...|++.++.. |.+......+.
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~ 122 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVD-PSNEEAREGVR 122 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHH
Confidence 8888888888888888877764 44445544443
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.11 E-value=1.5e-08 Score=83.07 Aligned_cols=209 Identities=11% Similarity=0.043 Sum_probs=135.3
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 035749 8 TKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMK 87 (405)
Q Consensus 8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 87 (405)
..+......|+..+...+...+.-.- + .++..-... .......+...+..+...|++++|..++++..
T Consensus 35 s~~e~g~~~~~~~~l~~i~~~l~~~~--~---~~~~~~~~~-------~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l 102 (293)
T 3u3w_A 35 SRIESGAVYPSMDILQGIAAKLQIPI--I---HFYEVLIYS-------DIERKKQFKDQVIMLCKQKRYKEIYNKVWNEL 102 (293)
T ss_dssp HHHHTTSCCCCHHHHHHHHHHHTCCT--H---HHHHTTTSS-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCHHHHHHHHHHhCcCH--H---HHhCCCCCC-------cchhHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 33433334677777777766654321 1 122221111 12334566677778888888888888888877
Q ss_pred hCCC-CCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cc----HhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 035749 88 DKNI-NPDV----VTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQ-PN----VVTFSVIMDELCKNGKMEEASQLLELMI 157 (405)
Q Consensus 88 ~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 157 (405)
+... .|+. ..+..+...+...+++++|+..+++....... ++ ..+++.+..+|...|++++|...++++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 103 KKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6543 3332 23445677777778888888888888774222 12 2357788888888888888888888877
Q ss_pred Hc-----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC----CCC-ChhhHHHHHHHHhhcCC-hHHHHHHHHH
Q 035749 158 QI-----GVRP-NAFVYNTLMDGFCLTGRVNRAKELFVSMESMG----CKH-NVFSYSILINGYCKNKE-IEGALSLYSE 225 (405)
Q Consensus 158 ~~-----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~-~~~a~~~~~~ 225 (405)
+. +..+ ...++..+..+|...|++++|...+++..+.. ..+ -..+|..+..++.+.|+ +++|.+.+++
T Consensus 183 ~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~ 262 (293)
T 3u3w_A 183 KQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 41 1111 23467788888888888888888888776531 111 25677888888888884 5888888887
Q ss_pred HHh
Q 035749 226 MLS 228 (405)
Q Consensus 226 ~~~ 228 (405)
...
T Consensus 263 Al~ 265 (293)
T 3u3w_A 263 ASF 265 (293)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.10 E-value=1.2e-08 Score=79.27 Aligned_cols=129 Identities=13% Similarity=-0.016 Sum_probs=101.0
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHH
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNS 100 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (405)
.+..+...+...|++++|+..|++++ ++++.++..+..++...|++++|+..|++..+.. +.+...+..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~ 76 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQ 76 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHH
Confidence 45667778888899999999888773 3467788888888888999999999988887764 557788888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCc---------------cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 035749 101 VIRGFCYANDSNEAKRLFIEMMDQGVQP---------------NVVTFSVIMDELCKNGKMEEASQLLELMIQIG 160 (405)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (405)
+..++...|++++|+..|++..+..... ....+..+..++...|++++|...++++.+..
T Consensus 77 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 77 RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8888888899999998888888753221 12566777778888888888888888887763
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.09 E-value=2.4e-08 Score=77.51 Aligned_cols=130 Identities=13% Similarity=0.013 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHH
Q 035749 60 AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDE 139 (405)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (405)
...+..+...+...|++++|+..|++.. +|+...+..+..++...|++++|+..|++...... .+...+..+..+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~ 80 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHH
Confidence 4456677888889999999999998774 56788999999999999999999999999987643 367788889999
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCCH----------------HHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 035749 140 LCKNGKMEEASQLLELMIQIGVRPNA----------------FVYNTLMDGFCLTGRVNRAKELFVSMESMG 195 (405)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 195 (405)
+...|++++|...++++.+.. +.+. ..+..+..++...|++++|...++.+.+..
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999999998863 2222 677888888899999999999999888764
No 124
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.08 E-value=8e-10 Score=80.03 Aligned_cols=100 Identities=11% Similarity=-0.003 Sum_probs=60.9
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHH
Q 035749 58 PDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIM 137 (405)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 137 (405)
.+...+..+...+.+.|++++|+..|+++.... |.+...|..+..++...|++++|+..|++..+..+. +...+..+.
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg 111 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHH
Confidence 345556666666666666666666666666553 445566666666666666666666666666655332 455555666
Q ss_pred HHHHcCCCHHHHHHHHHHHHHc
Q 035749 138 DELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
.++...|++++|...|++.++.
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666666655
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.07 E-value=7.6e-09 Score=76.74 Aligned_cols=96 Identities=11% Similarity=0.045 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHH
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNS 100 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (405)
.+..+...+...|++++|+..|+++++.. +.+..++..+..++...|++++|...+++..+.. +.+...+..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 86 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYR 86 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 34555555556666666666666655543 3345555555555666666666666665555442 334555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 101 VIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
+..++...|++++|...|++..+.
T Consensus 87 ~a~~~~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 87 RAASNMALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 555555555555555555555543
No 126
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.07 E-value=7.2e-07 Score=73.28 Aligned_cols=218 Identities=10% Similarity=0.051 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhc-C-ChHHHHHHH
Q 035749 147 EEASQLLELMIQIGVRPNAFVYNTLMDGFCLTG-RVNRAKELFVSMESMGCKHNVFSYSILINGYCKN-K-EIEGALSLY 223 (405)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~ 223 (405)
++|+++++.++..+ +.+..+|+.-..++...| .+++++.+++.+.... +.+..+|+.-...+... + +++++++.+
T Consensus 71 e~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 71 ERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 34444444444443 233333444333333444 2444555554444433 33344444333333333 3 444555555
Q ss_pred HHHHhCCCCCchhhHHHHHHHHHccccHH--------HHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCC-------hHH
Q 035749 224 SEMLSKGIKPTVVTYNTLFIGLFEIHQVE--------RAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGY-------IVE 288 (405)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~ 288 (405)
+++.+.. +-+..+|+.-...+.+.+.++ ++++.+.++++.+ +.|...++.....+.+.+. +++
T Consensus 149 ~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 149 HGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp HHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHH
Confidence 5554432 223333333333333333333 5556666665554 3455555555555555544 466
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCH--------------------HHHHHHHhhccCCC-----cCccHHHH
Q 035749 289 ALELFRTLRILKCELDIRSYSCLIDGLCKSGRL--------------------KIAWELFHSLPRGV-----LIADVVTY 343 (405)
Q Consensus 289 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~-----~~~~~~~~ 343 (405)
+++.++++.... +-|...|+.+-..+.+.|+. .....+...+.... ..+++..+
T Consensus 227 ELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 305 (349)
T 3q7a_A 227 ELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLAL 305 (349)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHH
Confidence 666666666554 45666666555555554442 33444444444331 13567788
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 344 NIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 344 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
..++..|...|+.++|.++++.+.+.
T Consensus 306 ~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 306 EYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 88888888889999999999988754
No 127
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.07 E-value=2.8e-09 Score=86.61 Aligned_cols=193 Identities=11% Similarity=-0.028 Sum_probs=94.9
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 035749 130 VVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILING 209 (405)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 209 (405)
...+..+...+...|++++|...++++++.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3445555555666666666666666665553 3355556666666666666666666666665543 3445556666666
Q ss_pred HhhcCChHHHHHHHHHHHhCCCCCch-hhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHH
Q 035749 210 YCKNKEIEGALSLYSEMLSKGIKPTV-VTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVE 288 (405)
Q Consensus 210 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 288 (405)
+...|++++|+..|++..... |+. ..+...+....+.. +... +........+.+......+... ..|+.++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRIA---KKKR-WNSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHH---HHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHHH---HHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 666666666666666655431 111 01111111111111 1111 1112222223333333333222 2466777
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhc-CCHHHHHHHHhhccC
Q 035749 289 ALELFRTLRILKCELDIRSYSCLIDGLCKS-GRLKIAWELFHSLPR 333 (405)
Q Consensus 289 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 333 (405)
|.+.++...+.. +.+......+...+... +.+++|.++|..+.+
T Consensus 154 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 777776666543 33333334444444443 556777777766543
No 128
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.07 E-value=5.7e-08 Score=79.55 Aligned_cols=199 Identities=11% Similarity=0.069 Sum_probs=142.0
Q ss_pred ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CccH-
Q 035749 56 CKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVT---YNSVIRGFCYANDSNEAKRLFIEMMDQGV-QPNV- 130 (405)
Q Consensus 56 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~- 130 (405)
..|+..+...+...+.-. ++ .++. .....+... +...+..+...|++++|...+++..+... .|+.
T Consensus 42 ~~~~~~~l~~i~~~l~~~--~~---~~~~----~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~ 112 (293)
T 3u3w_A 42 VYPSMDILQGIAAKLQIP--II---HFYE----VLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQ 112 (293)
T ss_dssp CCCCHHHHHHHHHHHTCC--TH---HHHH----TTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHH
T ss_pred CCCCHHHHHHHHHHhCcC--HH---HHhC----CCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHH
Confidence 467778877777765422 11 1221 111222333 33346778899999999999999987532 2232
Q ss_pred ---hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhc-----CCC
Q 035749 131 ---VTFSVIMDELCKNGKMEEASQLLELMIQIGVR-PN----AFVYNTLMDGFCLTGRVNRAKELFVSMESM-----GCK 197 (405)
Q Consensus 131 ---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~ 197 (405)
..+..+...+...|++++|+..++++.+.... ++ ..+++.+..+|...|++++|...++++.+. +..
T Consensus 113 ~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 192 (293)
T 3u3w_A 113 QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE 192 (293)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccch
Confidence 23345777788889999999999999985322 22 336889999999999999999999998741 111
Q ss_pred -CChhhHHHHHHHHhhcCChHHHHHHHHHHHhC----CCCC-chhhHHHHHHHHHccc-cHHHHHHHHHHHHH
Q 035749 198 -HNVFSYSILINGYCKNKEIEGALSLYSEMLSK----GIKP-TVVTYNTLFIGLFEIH-QVERAFKLFDEMQR 263 (405)
Q Consensus 198 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 263 (405)
....++..+...|.+.|++++|+..+++.++. +..+ -..++..+..++...| ++++|...++++..
T Consensus 193 ~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 23447889999999999999999999988753 2122 2567888999999999 46999999998764
No 129
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.06 E-value=1.1e-09 Score=79.36 Aligned_cols=126 Identities=14% Similarity=0.054 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHH
Q 035749 60 AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDE 139 (405)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (405)
..+...+...+...+.+.+++. .. |.+...+..+...+.+.|++++|+..|++++...+. +...|..+..+
T Consensus 9 ~~~~~~l~~~~~~~~~l~~al~-------l~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~ 79 (151)
T 3gyz_A 9 ESISTAVIDAINSGATLKDINA-------IP-DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAI 79 (151)
T ss_dssp CHHHHHHHHHHHTSCCTGGGCC-------SC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHhC-------CC-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3455666666666555555433 21 335667888888999999999999999999987543 78888899999
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 035749 140 LCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMG 195 (405)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 195 (405)
+...|++++|+..|+++.+.. |.+...+..+..++...|++++|...|++..+..
T Consensus 80 ~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 80 YQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999886 5678888999999999999999999999998874
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.05 E-value=7.9e-09 Score=73.40 Aligned_cols=99 Identities=15% Similarity=0.078 Sum_probs=58.4
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHH
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVT 97 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (405)
+...|..+...+...|++++|+..|+++++.. +.+..++..+..++...|++++|+..+++..+.. +.+...
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 86 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-------PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKG 86 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHH
Confidence 34455666666666666666666666666543 3345566666666666666666666666665542 334555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 98 YNSVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
+..+..++...|++++|...|++..+.
T Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 87 YTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 556666666666666666666665544
No 131
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.03 E-value=2e-07 Score=76.28 Aligned_cols=163 Identities=13% Similarity=0.046 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---cc--H
Q 035749 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDV------VTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQ---PN--V 130 (405)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~ 130 (405)
.+...+..+...|++++|.+.+++..+... ... ..+..+...+...|++++|+..+++....... +. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEE-YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcccc-CChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 344445555555666666665555544321 111 11222333444455555555555555432110 00 2
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC----CC-C
Q 035749 131 VTFSVIMDELCKNGKMEEASQLLELMIQI--GVRPN----AFVYNTLMDGFCLTGRVNRAKELFVSMESMGC----KH-N 199 (405)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~-~ 199 (405)
.+++.+...|...|++++|...++++.+. ..+.+ ..++..+..+|...|++++|...+++..+... .. -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 24444555555555555555555554421 00110 13444445555555555555555554433210 00 1
Q ss_pred hhhHHHHHHHHhhcCChHHH-HHHHHH
Q 035749 200 VFSYSILINGYCKNKEIEGA-LSLYSE 225 (405)
Q Consensus 200 ~~~~~~l~~~~~~~~~~~~a-~~~~~~ 225 (405)
..+|..+...|.+.|++++| ...+++
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 23344444445555555544 333443
No 132
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.03 E-value=2.3e-08 Score=74.11 Aligned_cols=130 Identities=11% Similarity=-0.022 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHH
Q 035749 60 AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDE 139 (405)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (405)
...+..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++..+... .+...+..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence 4567777777888888888888888877653 44677777778888888888888888887776532 256667777777
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHccCCHHHHHHHHHHHH
Q 035749 140 LCKNGKMEEASQLLELMIQIGVRPNAFVYNT--LMDGFCLTGRVNRAKELFVSME 192 (405)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~ 192 (405)
+...|++++|...++++.+.. +.+...+.. .+..+...|++++|...+....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 777778888887777777664 334444432 3333556677777777666553
No 133
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.02 E-value=1.4e-08 Score=71.10 Aligned_cols=98 Identities=13% Similarity=0.208 Sum_probs=58.4
Q ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHH
Q 035749 19 VITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTY 98 (405)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (405)
...|..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 80 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAW 80 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHH
Confidence 3455566666666666666666666666543 3345556666666666666666666666665543 3345555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 99 NSVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
..+...+...|++++|...++++.+.
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 81 YNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 56666666666666666666665554
No 134
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.02 E-value=5.9e-09 Score=75.55 Aligned_cols=111 Identities=9% Similarity=-0.042 Sum_probs=87.0
Q ss_pred HHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 035749 40 NLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFI 119 (405)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 119 (405)
..|+++++.. |.+...+..+...+...|++++|+..|++..... |.+...|..+..++...|++++|+..|+
T Consensus 8 ~~~~~al~~~-------p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 79 (148)
T 2vgx_A 8 GTIAMLNEIS-------SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYS 79 (148)
T ss_dssp CSHHHHTTCC-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhHHHHHcCC-------HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3456666543 4566778888888888899999999888887764 5577888888888888888888888888
Q ss_pred HHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 120 EMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 120 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
+.+...+. +...+..+..++...|++++|...|++.++.
T Consensus 80 ~al~l~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 80 YGAVMDIX-EPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88876433 5677777888888888888888888888775
No 135
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.01 E-value=1.5e-09 Score=90.54 Aligned_cols=137 Identities=9% Similarity=-0.083 Sum_probs=89.6
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCccc--------ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVV--------CKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK 89 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (405)
+...|..+...+.+.|++++|+..|+++++..+..... .+....+|..+..++.+.|++++|+..+++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45678899999999999999999999999876211000 0000466667777777777777777777776665
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHH-HHHHHHH
Q 035749 90 NINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEA-SQLLELM 156 (405)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~ 156 (405)
. +.+...+..+..++...|++++|+..|++.++..+. +...+..+..++...|+.+++ ...++.|
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 445666666666777777777777777666665332 455566666666666666655 2344444
No 136
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.00 E-value=2.4e-08 Score=70.84 Aligned_cols=121 Identities=8% Similarity=-0.022 Sum_probs=87.6
Q ss_pred ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHH
Q 035749 56 CKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSV 135 (405)
Q Consensus 56 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (405)
.+.+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.... +...+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 89 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTR 89 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHH
Confidence 35567788888888888888888888888887763 446777888888888888888888888888775332 5667777
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 035749 136 IMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTG 179 (405)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 179 (405)
+..++...|++++|...+++..+.. +.+...+..+..++...|
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 7777778888888888887777663 334455555555554433
No 137
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.00 E-value=1.1e-08 Score=74.09 Aligned_cols=110 Identities=10% Similarity=-0.036 Sum_probs=95.7
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 035749 6 LFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQ 85 (405)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 85 (405)
.|+.+.+.. +.+...+..+...+...|++++|+..|++++..+ |.++..|..+..++...|++++|+..|++
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 80 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-------HYDSRFFLGLGACRQAMGQYDLAIHSYSY 80 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-------cccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 455666543 3356678889999999999999999999999876 56788999999999999999999999999
Q ss_pred HHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 86 MKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
..... |.++..+..+..++...|++++|...|++.++.
T Consensus 81 al~l~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 81 GAVMD-IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 98875 567889999999999999999999999999875
No 138
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.00 E-value=6.8e-08 Score=79.09 Aligned_cols=172 Identities=9% Similarity=0.004 Sum_probs=127.6
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CCC--h
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNI---NPD--V 95 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~ 95 (405)
.+...+..+...|++++|++.+++.++..+.... .......+..+...+...|++++|+..+++..+... .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE-FQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChh-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445677788999999999999998876521000 001123455567777888999999999999875421 111 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH---C-CCCc--cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC----CCC-C
Q 035749 96 VTYNSVIRGFCYANDSNEAKRLFIEMMD---Q-GVQP--NVVTFSVIMDELCKNGKMEEASQLLELMIQIG----VRP-N 164 (405)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~-~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~ 164 (405)
.+++.+...|...|++++|...|++..+ . +..+ ...++..+..+|...|++++|...+++..+.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 5888999999999999999999999873 2 1111 22578889999999999999999999987642 111 2
Q ss_pred HHHHHHHHHHHHccCCHHHH-HHHHHHHHh
Q 035749 165 AFVYNTLMDGFCLTGRVNRA-KELFVSMES 193 (405)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 193 (405)
..++..+..+|...|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56788999999999999999 777877654
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.00 E-value=1.5e-08 Score=80.32 Aligned_cols=199 Identities=10% Similarity=-0.083 Sum_probs=145.9
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHH-------HHHHHhcCchHHHHHHHHHHHcCCCCCc--------------ccccccH
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTL-------INGLCRTGHTIVALNLFEEMINGNGEFG--------------VVCKPDA 60 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------~~~~~~~ 60 (405)
+|++.|.++.+.. |-....|..+ ...+...++..+++..+...++..+... ..+....
T Consensus 24 ~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~ 102 (282)
T 4f3v_A 24 RSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPL 102 (282)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHH
T ss_pred HHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHh
Confidence 6899999999885 4557789888 6777777778888888777776332110 0011124
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc--HhhHHHHHH
Q 035749 61 VIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPN--VVTFSVIMD 138 (405)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~ 138 (405)
.....+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..
T Consensus 103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 103 AITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGV 179 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHH
Confidence 566778888999999999999999887654 433366677778899999999999998665432 221 346777888
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 035749 139 ELCKNGKMEEASQLLELMIQIGVRPN--AFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSIL 206 (405)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 206 (405)
++...|++++|+..|++.......|. .........++.+.|+.++|...|+++.... |+...+..|
T Consensus 180 al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~aL 247 (282)
T 4f3v_A 180 AAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAAL 247 (282)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHH
Confidence 99999999999999999885543243 3466777888899999999999999998874 444444433
No 140
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.00 E-value=1.5e-09 Score=90.66 Aligned_cols=143 Identities=11% Similarity=-0.087 Sum_probs=84.0
Q ss_pred cCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---------------hH
Q 035749 32 TGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPD---------------VV 96 (405)
Q Consensus 32 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~ 96 (405)
.+++++|+..|+...+.. +.+...+..+...+.+.|++++|+..|++..+.. +.+ ..
T Consensus 126 L~~~~~A~~~~~~a~~~~-------p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~ 197 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEK-------LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLA 197 (336)
T ss_dssp EEEEECCCCGGGCCHHHH-------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHH-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHH
Confidence 345556666665544432 3356678888888888888888888888887763 222 35
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 035749 97 TYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFC 176 (405)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (405)
+|..+..++.+.|++++|+..|++.++..+. +...+..+..++...|++++|...|+++++.. +.+...+..+..++.
T Consensus 198 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 198 SHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 5555555555556666666655555554322 44555555555555555555555555555543 334445555555555
Q ss_pred ccCCHHHH
Q 035749 177 LTGRVNRA 184 (405)
Q Consensus 177 ~~~~~~~a 184 (405)
..|+.+++
T Consensus 276 ~~~~~~~a 283 (336)
T 1p5q_A 276 RIRRQLAR 283 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555554
No 141
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.00 E-value=2e-08 Score=79.64 Aligned_cols=187 Identities=7% Similarity=-0.092 Sum_probs=132.6
Q ss_pred hcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHH-------HHHHHhcCChHHHHHHHHHHHhCCCCCC---------
Q 035749 31 RTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTI-------IDGLCKEGFVDKAKELLLQMKDKNINPD--------- 94 (405)
Q Consensus 31 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------- 94 (405)
..++...|.+.|.++.+.+ |...+.|..+ ...+...++..+++..++.-... .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-------P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~ 88 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-------ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIG 88 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECC
T ss_pred cCCCHHHHHHHHHHHHHhC-------hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccC
Confidence 6899999999999999986 5668899888 57777777777777766665542 221
Q ss_pred -------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 035749 95 -------------VVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGV 161 (405)
Q Consensus 95 -------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (405)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+..
T Consensus 89 g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~- 165 (282)
T 4f3v_A 89 GLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP- 165 (282)
T ss_dssp TTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-
T ss_pred CcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-
Confidence 2234456677888899999999988887654 333255566667888888888888887554332
Q ss_pred CCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC--ChhhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 035749 162 RPN--AFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKH--NVFSYSILINGYCKNKEIEGALSLYSEMLSK 229 (405)
Q Consensus 162 ~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (405)
.|. ...+..+..++...|++++|+..|++.......| ..........++.+.|+.++|..+|+++...
T Consensus 166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 111 2366777788888888888888888877543213 3345566677778888888888888888775
No 142
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.00 E-value=7.1e-09 Score=73.33 Aligned_cols=97 Identities=14% Similarity=0.064 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHH
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYN 99 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 99 (405)
..+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|...+++..+.. +.+...+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 84 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-------PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYG 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHH
Confidence 344444455555555555555555554432 2334444455555555555555555555444432 22344444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 100 SVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
.+...+...|++++|...|++..+.
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 4444444445555555444444443
No 143
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.99 E-value=7.5e-07 Score=72.83 Aligned_cols=183 Identities=8% Similarity=-0.050 Sum_probs=126.7
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCc----------hHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHH
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGH----------TIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGL 70 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 70 (405)
++|+..++.++... |-+..+|+.--..+...+. +++++.+++.++..+ |.+..+|+.-.-++
T Consensus 47 ~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-------PKny~aW~hR~wlL 118 (331)
T 3dss_A 47 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-------PKSYGTWHHRCWLL 118 (331)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHH
Confidence 36888888888774 4455678776666655444 678899999998875 56777888777777
Q ss_pred HhcC--ChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcC----
Q 035749 71 CKEG--FVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYAND-SNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKN---- 143 (405)
Q Consensus 71 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 143 (405)
...+ .+++++.+++.+.+.. +.|..+|+.-...+...|. ++++++.++.+++..+. |..+|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcc
Confidence 7777 4789999999998875 5678888877777777787 58889999988887554 777777666555443
Q ss_pred ----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-----------CCHHHHHHHHHHHHhc
Q 035749 144 ----------GKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLT-----------GRVNRAKELFVSMESM 194 (405)
Q Consensus 144 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~ 194 (405)
+.++++++.+...+... |-|...|+.+-..+... +.++++++.++++.+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 34667777777776664 55666665443333333 2345555555555554
No 144
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.99 E-value=4e-09 Score=79.29 Aligned_cols=123 Identities=7% Similarity=0.121 Sum_probs=94.2
Q ss_pred HHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHH-HHh
Q 035749 29 LCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRG-FCY 107 (405)
Q Consensus 29 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 107 (405)
+...|++++|+..++++++.. |.+...+..+...+...|++++|...|++..+.. +.+...+..+..+ +..
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~ 91 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-------PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQ 91 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh
Confidence 356788888888888888765 5567888888888889999999999998887764 4567778888887 778
Q ss_pred cCCH--HHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 035749 108 ANDS--NEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIG 160 (405)
Q Consensus 108 ~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (405)
.|++ ++|...++++.+..+. +...+..+..++...|++++|...++++.+..
T Consensus 92 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 92 ASQHMTAQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp TTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred cCCcchHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8887 8888888888876433 56777778888888888888888888888764
No 145
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.98 E-value=2.3e-08 Score=70.61 Aligned_cols=121 Identities=11% Similarity=-0.028 Sum_probs=83.9
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHH
Q 035749 57 KPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVI 136 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (405)
+.+...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++.....+ .+...+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~ 86 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHH
Confidence 3456677777788888888888888888877653 44667777777777777888888887777776532 245666667
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 035749 137 MDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGR 180 (405)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (405)
..++...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 777777777777777777776664 3455566666666655554
No 146
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.98 E-value=7.1e-09 Score=79.79 Aligned_cols=158 Identities=13% Similarity=-0.038 Sum_probs=108.6
Q ss_pred hhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHc----CC-CccHHHHHHHHHHHhcCCC
Q 035749 211 CKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRH----GV-AADTWAYRTFIDGLCKNGY 285 (405)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~ 285 (405)
...|++++|.++++.+... .......+..+...+...|++++|...+.+.... +. +....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4578888998855555432 2235567778888888899999999998887652 11 2234567777788888899
Q ss_pred hHHHHHHHHHHHhc---CC-C--ccHHHHHHHHHHHHhcCCHHHHHHHHhhccCC----Cc-CccHHHHHHHHHHHHcCC
Q 035749 286 IVEALELFRTLRIL---KC-E--LDIRSYSCLIDGLCKSGRLKIAWELFHSLPRG----VL-IADVVTYNIMIHALCADG 354 (405)
Q Consensus 286 ~~~a~~~~~~~~~~---~~-~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g 354 (405)
+++|...+++.... .. . .....+..++..+...|++++|...+++..+. +. .....++..+..++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99998888887654 11 1 12445777888888889999998888876532 11 112334577788888888
Q ss_pred CHHHHHHHHHHHHhC
Q 035749 355 KMDKAHDLFLDMEAK 369 (405)
Q Consensus 355 ~~~~A~~~~~~~~~~ 369 (405)
++++|...+++..+.
T Consensus 162 ~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 162 NLLEAQQHWLRARDI 176 (203)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999988888888876
No 147
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.97 E-value=2.3e-06 Score=69.97 Aligned_cols=173 Identities=10% Similarity=-0.044 Sum_probs=119.5
Q ss_pred HHHhcCchH-HHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCChH
Q 035749 28 GLCRTGHTI-VALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGF----------VDKAKELLLQMKDKNINPDVV 96 (405)
Q Consensus 28 ~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~ 96 (405)
...+.|+++ +|+.+++.++..+ |.+..+|+.--.++...+. +++++.+++.+...+ |-+..
T Consensus 38 ~~~~~~e~s~eaL~~t~~~L~~n-------P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~ 109 (331)
T 3dss_A 38 QKRQAGELDESVLELTSQILGAN-------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYG 109 (331)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTTC-------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-------chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHH
Confidence 344667765 8999999999986 4556666665555544443 578888888888764 55777
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 035749 97 TYNSVIRGFCYAN--DSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGK-MEEASQLLELMIQIGVRPNAFVYNTLMD 173 (405)
Q Consensus 97 ~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 173 (405)
+|+.-...+...+ .+++++..++.+.+..+. |..+|+.-..++...|. ++++++.++.+++.. +.+...|+....
T Consensus 110 aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ 187 (331)
T 3dss_A 110 TWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSC 187 (331)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred HHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 8877777777777 478888888888887544 77778777777777777 688888888888875 556777766555
Q ss_pred HHHcc--------------CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHh
Q 035749 174 GFCLT--------------GRVNRAKELFVSMESMGCKHNVFSYSILINGYC 211 (405)
Q Consensus 174 ~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 211 (405)
.+... +.++++++.+....... |.|..+|+-+-..+.
T Consensus 188 ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~ 238 (331)
T 3dss_A 188 LLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLG 238 (331)
T ss_dssp HHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 54443 34666777777766654 455666654433333
No 148
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.97 E-value=1.4e-08 Score=78.16 Aligned_cols=158 Identities=11% Similarity=-0.003 Sum_probs=98.6
Q ss_pred HHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CCChHHHHHHHH
Q 035749 29 LCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK----NI-NPDVVTYNSVIR 103 (405)
Q Consensus 29 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~ 103 (405)
+...|++++|.+.++.+... ......++..+...+...|++++|...+++.... +. +....++..+..
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 74 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAH-------PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGM 74 (203)
T ss_dssp -----CHHHHHHHHHHHHTS-------TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcCC-------hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 34678889998866555432 2356778888888899999999999988887652 11 123456677777
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----CCC--ccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC---CCCC--HHHHHHHH
Q 035749 104 GFCYANDSNEAKRLFIEMMDQ----GVQ--PNVVTFSVIMDELCKNGKMEEASQLLELMIQIG---VRPN--AFVYNTLM 172 (405)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~~~~~~l~ 172 (405)
.+...|++++|...+++.... +.. .....+..+...+...|++++|...+++..+.. ..+. ..++..+.
T Consensus 75 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 154 (203)
T 3gw4_A 75 VERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLG 154 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 788888888888887776543 111 123445666667777777777777777665421 0111 12345556
Q ss_pred HHHHccCCHHHHHHHHHHHHh
Q 035749 173 DGFCLTGRVNRAKELFVSMES 193 (405)
Q Consensus 173 ~~~~~~~~~~~a~~~~~~~~~ 193 (405)
.++...|++++|...+++..+
T Consensus 155 ~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 155 DLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHH
Confidence 666666677666666665543
No 149
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.97 E-value=5.1e-08 Score=68.13 Aligned_cols=113 Identities=15% Similarity=0.193 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHH
Q 035749 60 AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDE 139 (405)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (405)
...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+... .+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence 5667777777777777777777777776653 44566677777777777777777777777766532 245566666666
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 035749 140 LCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGF 175 (405)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (405)
+...|++++|...++++.+.. +.+...+..+..++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 777777777777777766653 33444444444433
No 150
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.97 E-value=1.8e-08 Score=75.61 Aligned_cols=117 Identities=8% Similarity=0.057 Sum_probs=102.5
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHH-HHhcCCh--H
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDG-LCKEGFV--D 77 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~ 77 (405)
++|+..++...+.. +.+...|..+...+...|++++|+..|+++++.. +.+...+..+..+ +...|++ +
T Consensus 27 ~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 27 EAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-------GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHhcCCcchH
Confidence 46888899888775 5677899999999999999999999999999875 5577888899988 7789998 9
Q ss_pred HHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 035749 78 KAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGV 126 (405)
Q Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 126 (405)
+|...++++.+.. +.+...+..+...+...|++++|...|+++.+..+
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 9999999998874 55788899999999999999999999999998743
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.96 E-value=2.1e-08 Score=70.46 Aligned_cols=98 Identities=14% Similarity=-0.022 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHH
Q 035749 19 VITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTY 98 (405)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (405)
...|..+...+.+.|++++|+..|+++++.. |.+...|..+..++.+.|++++|+..+++..+.. |.+...|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 75 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAY 75 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHH
Confidence 4566777777888888888888888887765 4567778888888888888888888888877764 4467777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 99 NSVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
..+..++...|++++|...|++..+.
T Consensus 76 ~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 76 IRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 77888888888888888888777664
No 152
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.95 E-value=6e-09 Score=75.08 Aligned_cols=99 Identities=11% Similarity=-0.058 Sum_probs=73.7
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHH
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVT 97 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (405)
+...+..+...+.+.|++++|+..|++++..+ |.+...|..+..++...|++++|+..|++..... |.++..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 88 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-------HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRF 88 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHH
Confidence 34456667777778888888888888877765 4567777777788888888888888888777664 456677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 98 YNSVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
+..+..++...|++++|...|+..++.
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 89 PFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777788888888888888777654
No 153
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.93 E-value=1.3e-08 Score=73.28 Aligned_cols=101 Identities=7% Similarity=-0.113 Sum_probs=80.6
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHH
Q 035749 57 KPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVI 136 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (405)
|.+...+..+...+.+.|++++|...|+++...+ |.+...|..+..++...|++++|+..|++.....+. +...+..+
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 92 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHH
Confidence 4456677778888888888888888888887764 557788888888888888888888888888876433 56677778
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHc
Q 035749 137 MDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
..++...|++++|...|+...+.
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888888888765
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.91 E-value=8.5e-08 Score=66.23 Aligned_cols=99 Identities=22% Similarity=0.154 Sum_probs=69.5
Q ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHH
Q 035749 19 VITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTY 98 (405)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (405)
...+..+...+...|++++|+..|+++.... |.+...+..+..++...|++++|...+++..+.. +.+...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 75 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGY 75 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHH
Confidence 4456667777777777777777777777654 3456677777777777777777777777776653 4456667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 035749 99 NSVIRGFCYANDSNEAKRLFIEMMDQG 125 (405)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 125 (405)
..+..++...|++++|...+++..+..
T Consensus 76 ~~~a~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 76 SRKAAALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 777777777777777777777776653
No 155
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.90 E-value=4.4e-09 Score=80.68 Aligned_cols=165 Identities=13% Similarity=-0.042 Sum_probs=70.0
Q ss_pred HHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHH
Q 035749 27 NGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFC 106 (405)
Q Consensus 27 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 106 (405)
......|+++++.+.|+..... .......+..+...+...|++++|+..|++..+.. +.+.. +...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~-~~~~----- 77 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEE-------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEE-WDDQ----- 77 (198)
T ss_dssp ----------CCCSGGGCCHHH-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTT-CCCH-----
T ss_pred hhhhhhhhccccCchhhCCHHH-------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccc-cchh-----
Confidence 3344455555555555443221 12334566677777777777777777777776642 11210 0000
Q ss_pred hcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 035749 107 YANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKE 186 (405)
Q Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 186 (405)
....-. . ......+..+..++...|++++|+..+++.++.. +.+...+..+..++...|++++|..
T Consensus 78 ---~~~~~~---~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~ 143 (198)
T 2fbn_A 78 ---ILLDKK---K-------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKE 143 (198)
T ss_dssp ---HHHHHH---H-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ---hHHHHH---H-------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHH
Confidence 000000 0 0012334444444445555555555555544442 3344444455555555555555555
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHH
Q 035749 187 LFVSMESMGCKHNVFSYSILINGYCKNKEIEGAL 220 (405)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 220 (405)
.|++..+.. +.+...+..+..++...++.+++.
T Consensus 144 ~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 144 NLYKAASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 555554442 233444444444444444444433
No 156
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.88 E-value=3.7e-08 Score=67.38 Aligned_cols=101 Identities=12% Similarity=0.023 Sum_probs=79.8
Q ss_pred CChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--C
Q 035749 17 PNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINP--D 94 (405)
Q Consensus 17 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~ 94 (405)
.+...|..+...+...|++++|+..|+++++.. +.+...+..+...+...|++++|...+++..+.. +. +
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 75 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-------PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYN 75 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTC
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccch
Confidence 345667778888888888888888888888765 4567778888888888888888888888887764 44 5
Q ss_pred hHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCC
Q 035749 95 VVTYNSVIRGFCYA-NDSNEAKRLFIEMMDQG 125 (405)
Q Consensus 95 ~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~ 125 (405)
...+..+..++... |++++|.+.++......
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 76 KDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 77788888888888 88888888888887664
No 157
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.85 E-value=6.7e-08 Score=67.88 Aligned_cols=97 Identities=13% Similarity=0.088 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCC---
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNI--NPD--- 94 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~--- 94 (405)
.++..+...+.+.|++++|+..|+++++.+ |.+..+|..+..++.+.|++++|++.+++..+... .++
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-------p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 81 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-------PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKL 81 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHH
Confidence 345666667777777777777777776654 44566666777777777777777777766654310 111
Q ss_pred -hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 035749 95 -VVTYNSVIRGFCYANDSNEAKRLFIEMMD 123 (405)
Q Consensus 95 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (405)
..+|..+..++...|++++|++.|++.+.
T Consensus 82 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 82 IAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 12444555555556666666666665554
No 158
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.85 E-value=1.7e-07 Score=65.71 Aligned_cols=99 Identities=10% Similarity=-0.054 Sum_probs=69.6
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHH
Q 035749 59 DAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMD 138 (405)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (405)
+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..+++.++..+. +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 34566777777777777777777777777653 446677777777777777777777777777765433 5666666777
Q ss_pred HHHcCCCHHHHHHHHHHHHHc
Q 035749 139 ELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~ 159 (405)
++...|++++|...+++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 777777777777777776654
No 159
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.85 E-value=3e-07 Score=63.37 Aligned_cols=109 Identities=14% Similarity=0.014 Sum_probs=71.5
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHH
Q 035749 59 DAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMD 138 (405)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (405)
....+..++..+...|++++|...+++..... +.+...+..+...+...|++++|...+++..+..+. +...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 34566677777777777777777777776653 446666777777777777777777777777665322 4556666666
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 035749 139 ELCKNGKMEEASQLLELMIQIGVRPNAFVYNT 170 (405)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (405)
++...|++++|...++...+.. +.+...+..
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 111 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEG 111 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcC-CCCHHHHHH
Confidence 7777777777777777766653 333334333
No 160
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.83 E-value=1e-08 Score=78.66 Aligned_cols=97 Identities=12% Similarity=-0.023 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHH
Q 035749 166 FVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGL 245 (405)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (405)
.++..+..++...|++++|+..++.+.... +.+...+..+..++...|++++|+..|++..... +.+...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 678889999999999999999999999875 5678889999999999999999999999998863 33566777788888
Q ss_pred HccccHHHHH-HHHHHHHHc
Q 035749 246 FEIHQVERAF-KLFDEMQRH 264 (405)
Q Consensus 246 ~~~~~~~~a~-~~~~~~~~~ 264 (405)
...++..++. ..+..+...
T Consensus 167 ~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 8888877776 555555543
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.83 E-value=8.9e-08 Score=70.80 Aligned_cols=99 Identities=10% Similarity=0.021 Sum_probs=69.3
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHH
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVT 97 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (405)
+...|..+...+...|++++|+..|+++++.. +.+...|..+..++...|++++|+..|++..+.. +.+...
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 81 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-------PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKA 81 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHH
Confidence 34566667777777777777777777777654 4456677777777777777777777777776654 445667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 98 YNSVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
|..+..++...|++++|...|++.++.
T Consensus 82 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 82 WSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 777777777777777777777777654
No 162
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.82 E-value=1.5e-07 Score=66.03 Aligned_cols=107 Identities=11% Similarity=0.087 Sum_probs=75.2
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--cc----Hhh
Q 035749 59 DAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQ--PN----VVT 132 (405)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~ 132 (405)
...++..++..+.+.|++++|++.|++..+.. |.+...|..+..+|...|++++|+..+++.++..+. ++ ..+
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 35567788888888888888888888887764 556778888888888888888888888887754211 01 134
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 035749 133 FSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVY 168 (405)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 168 (405)
|..+..++...|++++|++.|++.++. .|+..+.
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 555666666777777777777776654 3444443
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.82 E-value=1.3e-07 Score=67.38 Aligned_cols=100 Identities=15% Similarity=-0.046 Sum_probs=63.6
Q ss_pred CChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChH
Q 035749 17 PNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVV 96 (405)
Q Consensus 17 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 96 (405)
.+...|..+...+...|++++|+..|+++++.. +.+...+..+..++...|++++|...+++..+.. +.+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 78 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-------PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVK 78 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-------cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHH
Confidence 345566666666666777777777776666654 3445666666666666666666666666666553 34556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 97 TYNSVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
.+..+..++...|++++|...|++..+.
T Consensus 79 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 79 AHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 6666666666666666666666666543
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=3e-07 Score=66.43 Aligned_cols=99 Identities=16% Similarity=0.034 Sum_probs=71.8
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCccccccc---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPD---AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPD 94 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 94 (405)
+...+..+...+...|++++|+..|+++++.. +.+ ...+..+..++...|++++|+..+++..+.. +.+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~ 98 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD-------ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGD 98 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-------ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccC
Confidence 45567777777888888888888888887754 222 5677777777777888888888877776653 445
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 95 VVTYNSVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
...+..+..++...|++++|...|++..+.
T Consensus 99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 99 VKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 667777777777777777777777777665
No 165
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.79 E-value=7e-08 Score=67.08 Aligned_cols=96 Identities=8% Similarity=-0.049 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHH
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNS 100 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (405)
.+..+...+.+.|++++|+..|+++++.. |.+...|..+..++...|++++|+..|++..+.. |.+...+..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~ 90 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAA 90 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 45667778888888888888888888865 5577888888888888888888888888888764 456778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 101 VIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
+..++...|++++|+..+++.++.
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 91 LAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888888888764
No 166
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.75 E-value=3e-07 Score=67.94 Aligned_cols=102 Identities=10% Similarity=-0.024 Sum_probs=81.1
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHH
Q 035749 57 KPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVI 136 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (405)
+.+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++.++.... +...+..+
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 85 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRL 85 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 4566778888888888888888888888888764 457788888888888888888888888888876433 57777788
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcC
Q 035749 137 MDELCKNGKMEEASQLLELMIQIG 160 (405)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~ 160 (405)
..++...|++++|...|++.++..
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC
Confidence 888888888888888888887763
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.75 E-value=2.6e-07 Score=65.89 Aligned_cols=101 Identities=13% Similarity=-0.003 Sum_probs=75.8
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHH
Q 035749 57 KPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVI 136 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (405)
+.++..+..+...+...|++++|+..|++..... +.+...+..+..++...|++++|...+++.++..+. +...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHH
Confidence 4567778888888888888888888888877664 446777777888888888888888888877776433 56677777
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHc
Q 035749 137 MDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
..++...|++++|...++++.+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 77777788888888877777654
No 168
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.75 E-value=6.2e-08 Score=68.38 Aligned_cols=98 Identities=12% Similarity=0.142 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCC---
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNI--NPD--- 94 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~--- 94 (405)
..|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...+++..+... +++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 77 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-------PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQ 77 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHH
Confidence 456666666777777777777777776654 34556666677777777777777777766655421 111
Q ss_pred -hHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 95 -VVTYNSVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 95 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
..++..+..++...|++++|.+.|++..+.
T Consensus 78 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 78 IAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 455556666666666666666666666554
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.74 E-value=1.6e-07 Score=66.14 Aligned_cols=112 Identities=13% Similarity=0.121 Sum_probs=79.5
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--cc----Hhh
Q 035749 59 DAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQ--PN----VVT 132 (405)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~ 132 (405)
.+..+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++....... ++ ..+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 35667778888888888888888888887764 556777888888888888888888888887765221 11 556
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 035749 133 FSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMD 173 (405)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 173 (405)
+..+..++...|++++|...++.+.+.. |+......+..
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~ 120 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 6667777777778888877777777653 35444444433
No 170
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.72 E-value=3.7e-07 Score=62.28 Aligned_cols=91 Identities=11% Similarity=-0.044 Sum_probs=36.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC--ChhhHHHHHHHHhhc
Q 035749 136 IMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKH--NVFSYSILINGYCKN 213 (405)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 213 (405)
+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...+++..+.. +. +...+..+..++...
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~~~ 89 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALRYI 89 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHHHH
Confidence 3333444444444444444443332 2233333344444444444444444444443332 22 233344444444444
Q ss_pred -CChHHHHHHHHHHHh
Q 035749 214 -KEIEGALSLYSEMLS 228 (405)
Q Consensus 214 -~~~~~a~~~~~~~~~ 228 (405)
|++++|.+.+.+...
T Consensus 90 ~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 90 EGKEVEAEIAEARAKL 105 (112)
T ss_dssp SSCSHHHHHHHHHHGG
T ss_pred hCCHHHHHHHHHHHhh
Confidence 444444444444433
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=1.1e-06 Score=63.50 Aligned_cols=111 Identities=14% Similarity=0.052 Sum_probs=73.5
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhh
Q 035749 57 KPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPD----VVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVT 132 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 132 (405)
+.+...+..+...+...|++++|...|++..+.. |+ ...+..+..++...|++++|+..+++..+... .+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHH
Confidence 3456677777777888888888888888777653 44 56666777777777777777777777766532 24556
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 035749 133 FSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTL 171 (405)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 171 (405)
+..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 139 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEAL 139 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHH
Confidence 6666667777777777777777776653 3333444333
No 172
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.69 E-value=5.1e-08 Score=85.05 Aligned_cols=124 Identities=12% Similarity=-0.022 Sum_probs=80.9
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCccccccc---------------HHHHHHHHHHHHhcCChHHHHHH
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPD---------------AVIYTTIIDGLCKEGFVDKAKEL 82 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~ 82 (405)
....|..+...+.+.|++++|+..|+++++..+ .+ ..+|..+..++.+.|++++|+..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p-------~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~ 339 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLE-------MEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVEC 339 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT-------TCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-------ccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 345788899999999999999999999998652 22 45666666666666666666666
Q ss_pred HHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHH
Q 035749 83 LLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEAS 150 (405)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 150 (405)
+++..+.. +.+...|..+..++...|++++|+..|++.++..+. +...+..+..++...++.+++.
T Consensus 340 ~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 340 CDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 66666553 345666666666666666666666666666654322 3445555555555555555444
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.68 E-value=8.6e-07 Score=62.33 Aligned_cols=98 Identities=8% Similarity=-0.052 Sum_probs=70.9
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---hHHH
Q 035749 22 YSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPD---VVTY 98 (405)
Q Consensus 22 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~ 98 (405)
+..+...+...|++++|+..|+++++..+. .+.....+..+..++...|++++|...|+++.+.. |.+ ...+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~ 79 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPN----GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGL 79 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCC----CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHH
Confidence 455667778888888888888888876521 01112577778888888888888888888887653 333 5667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 99 NSVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
..+..++...|++++|...|+.+.+.
T Consensus 80 ~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 80 LKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777888888888888888887765
No 174
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.68 E-value=2.8e-06 Score=73.70 Aligned_cols=197 Identities=8% Similarity=-0.102 Sum_probs=107.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCCCCCh----------------hhHHHHHHHHhhcCChHHHHHHHHHHHhC-CCCCc
Q 035749 172 MDGFCLTGRVNRAKELFVSMESMGCKHNV----------------FSYSILINGYCKNKEIEGALSLYSEMLSK-GIKPT 234 (405)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~ 234 (405)
.+.+...|++++|++.|..+.+....... .++..++..|...|++++|.+.+..+... +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45566778888888888887765322110 12556667777777777777777665542 11111
Q ss_pred hh----hHHHHHHHHHccccHHHHHHHHHHHHHc----CCC-ccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC-----
Q 035749 235 VV----TYNTLFIGLFEIHQVERAFKLFDEMQRH----GVA-ADTWAYRTFIDGLCKNGYIVEALELFRTLRILK----- 300 (405)
Q Consensus 235 ~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----- 300 (405)
.. +.+.+...+...|+++.+..++...... +.. .-..++..+...+...|++++|..+++.+...-
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 11 1222233334456677777666665431 111 123455566666666777777777666654321
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCC----CcCc--cHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 035749 301 CELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRG----VLIA--DVVTYNIMIHALCADGKMDKAHDLFLDMEA 368 (405)
Q Consensus 301 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 368 (405)
.+....++..++..|...|++++|..++++.... ..++ -...+..++..+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1122345666666677777777777666654321 1111 123445555556666677777666666654
No 175
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.66 E-value=4.1e-08 Score=85.60 Aligned_cols=158 Identities=13% Similarity=-0.055 Sum_probs=81.3
Q ss_pred CchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHH
Q 035749 33 GHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSN 112 (405)
Q Consensus 33 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 112 (405)
+++++|+..|+...+.. +.....+..+...+.+.|++++|+..|++..+.. +.+.. + . .+
T Consensus 248 ~~~~~A~~~~~~~~~~~-------~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~-~----------~-~~ 307 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK-------LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYG-L----------S-EK 307 (457)
T ss_dssp EEEECCCCGGGSCHHHH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCS-C----------C-HH
T ss_pred hhcccCcchhhcCHHHH-------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-ccccc-C----------C-hH
Confidence 34445555555444321 3345677888888888888888888888877642 11210 0 0 00
Q ss_pred HHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 035749 113 EAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSME 192 (405)
Q Consensus 113 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 192 (405)
... ... ......|..+..++.+.|++++|+..++++++.. +.+...+..+..+|...|++++|...|+++.
T Consensus 308 ~~~----~~~----~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al 378 (457)
T 1kt0_A 308 ESK----ASE----SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVL 378 (457)
T ss_dssp HHH----HHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHH----HHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 000 000 0013344455555555555555555555555543 3345555555555555666666666665555
Q ss_pred hcCCCCChhhHHHHHHHHhhcCChHHHH
Q 035749 193 SMGCKHNVFSYSILINGYCKNKEIEGAL 220 (405)
Q Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 220 (405)
+.. +.+...+..+..++.+.++.+++.
T Consensus 379 ~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 379 EVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp TTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 543 334445555555555555555443
No 176
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.66 E-value=4.2e-06 Score=72.66 Aligned_cols=198 Identities=11% Similarity=-0.031 Sum_probs=142.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC----------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-Cc
Q 035749 66 IIDGLCKEGFVDKAKELLLQMKDKNINPD----------------VVTYNSVIRGFCYANDSNEAKRLFIEMMDQGV-QP 128 (405)
Q Consensus 66 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~ 128 (405)
-...+.+.|++++|++.|..+.+...... ..++..++..|...|++++|.+.+..+...-. .+
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 45667889999999999999987632111 12477889999999999999999988765311 11
Q ss_pred cH----hhHHHHHHHHHcCCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC---
Q 035749 129 NV----VTFSVIMDELCKNGKMEEASQLLELMIQI----GVR-PNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGC--- 196 (405)
Q Consensus 129 ~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--- 196 (405)
+. ...+.+...+...|+++++..+++..... +.. .-..++..+...+...|++++|..+++.+...-.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 11 12333444455678999999999887653 222 2345778899999999999999999998764311
Q ss_pred --CCChhhHHHHHHHHhhcCChHHHHHHHHHHHhC----CCCCc--hhhHHHHHHHHHccccHHHHHHHHHHHHH
Q 035749 197 --KHNVFSYSILINGYCKNKEIEGALSLYSEMLSK----GIKPT--VVTYNTLFIGLFEIHQVERAFKLFDEMQR 263 (405)
Q Consensus 197 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 263 (405)
+....++..++..|...|++++|..++++.... +.++. ...+..+...+...+++++|...+.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 123457888899999999999999999987653 11111 23456666777889999999988887754
No 177
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.66 E-value=2e-07 Score=64.81 Aligned_cols=95 Identities=8% Similarity=-0.098 Sum_probs=64.2
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHc
Q 035749 273 YRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCA 352 (405)
Q Consensus 273 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 352 (405)
+..+...+.+.|++++|...++++.... |.+...+..++.++...|++++|+..|+++.+... .+...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 4445566667777777777777777664 45666777777777777777777777777665422 245666677777777
Q ss_pred CCCHHHHHHHHHHHHhC
Q 035749 353 DGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 353 ~g~~~~A~~~~~~~~~~ 369 (405)
.|++++|+..++++++.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777777653
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.61 E-value=2.9e-08 Score=86.93 Aligned_cols=125 Identities=12% Similarity=0.020 Sum_probs=98.2
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHH
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNS 100 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (405)
.+..+...+.+.|++++|++.|+++++.. +.+..++..+..++.+.|++++|++.+++..+.. +.+...+..
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~ 79 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELN-------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYR 79 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 34445566778999999999999999875 5568899999999999999999999999999874 557888999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHH--HHcCCCHHHHHHHHH
Q 035749 101 VIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDE--LCKNGKMEEASQLLE 154 (405)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 154 (405)
+..++...|++++|++.|++..+..+. +...+..+..+ +.+.|++++|++.++
T Consensus 80 lg~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 80 RAASNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999876432 44455555555 777889999998887
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.61 E-value=7.5e-07 Score=75.15 Aligned_cols=128 Identities=7% Similarity=-0.033 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCc---------ccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFG---------VVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKN 90 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 90 (405)
..|..+...+.+.|++++|+..|+++++..+... ...+.+..+|..+..++.+.|++++|+..+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 3577888999999999999999999987210000 0012334556666666666666666666666665543
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHH
Q 035749 91 INPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEA 149 (405)
Q Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 149 (405)
+.+...+..+..++...|++++|+..|++..+..+. +...+..+..++...++.+++
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 334555555666666666666666666665554222 344444444444444444333
No 180
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.61 E-value=1.2e-06 Score=64.55 Aligned_cols=105 Identities=11% Similarity=0.084 Sum_probs=76.4
Q ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCC------ccc-----ccccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 035749 19 VITYSTLINGLCRTGHTIVALNLFEEMINGNGEF------GVV-----CKPDAVIYTTIIDGLCKEGFVDKAKELLLQMK 87 (405)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 87 (405)
...+......+.+.|++++|+..|+++++..+.. ... .+.+..+|..+..++.+.|++++|+..+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4567888999999999999999999998751000 000 02234577777777888888888888888777
Q ss_pred hCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 88 DKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
+.. |.+...|..+..++...|++++|...|++.+..
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 664 556777777777788888888888888777765
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.58 E-value=1.1e-06 Score=64.49 Aligned_cols=102 Identities=16% Similarity=0.100 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC----
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNI-NPD---- 94 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~---- 94 (405)
.++..+...+...|++++|+..++++++.....+. ......++..+...+...|++++|...+++..+... ..+
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 35666667777777777777777776654210000 001123566666666677777777776666543210 001
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 035749 95 VVTYNSVIRGFCYANDSNEAKRLFIEMM 122 (405)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 122 (405)
..++..+...+...|++++|...+++..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2344455555556666666665555544
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.57 E-value=2.8e-07 Score=67.73 Aligned_cols=130 Identities=12% Similarity=0.001 Sum_probs=64.3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhcCC---Cc--cHHHHHHHHHHHHhcCCHHHHHHHHhhccCC----Cc-CccHHH
Q 035749 273 YRTFIDGLCKNGYIVEALELFRTLRILKC---EL--DIRSYSCLIDGLCKSGRLKIAWELFHSLPRG----VL-IADVVT 342 (405)
Q Consensus 273 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~ 342 (405)
+..+...+...|++++|...+++...... .+ ...++..++..+...|++++|...+++..+. +. ......
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 33444444445555555555544433210 00 0124455555555666666666655554321 00 011334
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHccCchhHHHHHHHHhh
Q 035749 343 YNIMIHALCADGKMDKAHDLFLDMEAK----GVA-PDCVAFNTLMLGCIRNNETSKVVELLHRMD 402 (405)
Q Consensus 343 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 402 (405)
+..+...+...|++++|...+++..+. +.. .....+..+...+...|++++|.+.+++..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 555666666666666666666665532 111 012345555666666777777777666654
No 183
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.57 E-value=4.6e-06 Score=58.48 Aligned_cols=94 Identities=16% Similarity=0.102 Sum_probs=55.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc---HhhHHHHH
Q 035749 64 TTIIDGLCKEGFVDKAKELLLQMKDKNINPDV---VTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPN---VVTFSVIM 137 (405)
Q Consensus 64 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 137 (405)
..+...+...|++++|...|+++.+.. |.+. ..+..+..++...|++++|...|+++.+..+. + ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHH
Confidence 344555666677777777776666542 2222 35556666666666666666666666654322 2 34455556
Q ss_pred HHHHcCCCHHHHHHHHHHHHHc
Q 035749 138 DELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
.++...|++++|...++.+.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 6666666666666666666655
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.55 E-value=4e-07 Score=62.83 Aligned_cols=89 Identities=13% Similarity=0.055 Sum_probs=68.9
Q ss_pred hcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCC
Q 035749 31 RTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYAND 110 (405)
Q Consensus 31 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 110 (405)
..|++++|+..|+++++.+.. .|.+..++..+..++...|++++|+..|++..+.. |.+...+..+..++...|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 76 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQ----GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGR 76 (117)
T ss_dssp -----CCCHHHHHHHHSSCCC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred CCCcHHHHHHHHHHHHHcCCC----CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCC
Confidence 467888999999999886310 14456788889999999999999999999988774 5568888888999999999
Q ss_pred HHHHHHHHHHHHHC
Q 035749 111 SNEAKRLFIEMMDQ 124 (405)
Q Consensus 111 ~~~a~~~~~~~~~~ 124 (405)
+++|+..+++.+..
T Consensus 77 ~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 77 YEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999888765
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.54 E-value=2.8e-07 Score=80.73 Aligned_cols=118 Identities=10% Similarity=-0.077 Sum_probs=64.5
Q ss_pred HHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHH
Q 035749 279 GLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDK 358 (405)
Q Consensus 279 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 358 (405)
.+.+.|++++|.+.++++.+.. +.+..++..++.+|...|++++|...++++.+.. +.+...+..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 3445566666666666665553 3445566666666666666666666666665542 2245556666666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHH--HHccCchhHHHHHHH
Q 035749 359 AHDLFLDMEAKGVAPDCVAFNTLMLG--CIRNNETSKVVELLH 399 (405)
Q Consensus 359 A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 399 (405)
|++.++++.+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666666542 1123334444433 556666666666655
No 186
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.53 E-value=3.6e-06 Score=75.12 Aligned_cols=171 Identities=8% Similarity=-0.057 Sum_probs=135.8
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCc----------hHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHH
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGH----------TIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGL 70 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 70 (405)
++|++.++.+.... +-+..+|+..-.++...|+ ++++++.++.+++.+ |.+..+|..-.-++
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-------pK~y~aW~hR~w~l 117 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-------PKSYGTWHHRCWLL 117 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHH
Confidence 47888999998875 4566788888888877777 899999999999986 56788888888888
Q ss_pred HhcC--ChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcC----
Q 035749 71 CKEG--FVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYAN-DSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKN---- 143 (405)
Q Consensus 71 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 143 (405)
.+.+ +++++++.++++.+.. +.+..+|+.-...+...| .++++++.++++++..+. +..+|+.....+.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCC
T ss_pred HHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccc
Confidence 8888 6799999999999885 568888988888888888 899999999999887655 778888777666552
Q ss_pred ----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 035749 144 ----------GKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVN 182 (405)
Q Consensus 144 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 182 (405)
+.++++++.+++++... +.+...|..+...+.+.++.+
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCS
T ss_pred cccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCcc
Confidence 45678888888887765 556777777776666666533
No 187
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.53 E-value=9.6e-06 Score=72.41 Aligned_cols=179 Identities=9% Similarity=-0.033 Sum_probs=144.1
Q ss_pred HHhcCc-hHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCChHH
Q 035749 29 LCRTGH-TIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGF----------VDKAKELLLQMKDKNINPDVVT 97 (405)
Q Consensus 29 ~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~ 97 (405)
..+.|+ .++|++.++++++.+ |.+..+|+.-..++...|+ ++++++.++.+.+.+ |-+..+
T Consensus 38 ~~~~~~~~eeal~~~~~~l~~n-------P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~a 109 (567)
T 1dce_A 38 KRQAGELDESVLELTSQILGAN-------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGT 109 (567)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC-------chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHH
Confidence 334455 467899999999986 5567788887777777777 899999999999875 557888
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 035749 98 YNSVIRGFCYAN--DSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNG-KMEEASQLLELMIQIGVRPNAFVYNTLMDG 174 (405)
Q Consensus 98 ~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (405)
|..-...+.+.+ +++++++.++++.+..+. +..+|+....++.+.| .++++++.++++++.. +-+...|+.....
T Consensus 110 W~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~l 187 (567)
T 1dce_A 110 WHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCL 187 (567)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHH
Confidence 988888888889 779999999999998655 8888988888888888 8999999999998876 5677888777666
Q ss_pred HHcc--------------CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHH
Q 035749 175 FCLT--------------GRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEG 218 (405)
Q Consensus 175 ~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (405)
+... +.++++++.+..+.... |.+..+|..+...+.+.++.++
T Consensus 188 l~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 188 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 5553 55789999999988775 6677888888777777766443
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.51 E-value=1.8e-06 Score=72.81 Aligned_cols=138 Identities=10% Similarity=-0.063 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHH
Q 035749 60 AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDE 139 (405)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (405)
...+..+...+.+.|++++|+..|++..+.. +... ..... +..... .+.+...|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~~~~~-------~~~~~~-~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------AAAED-------ADGAKL-QPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------HHSCH-------HHHGGG-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------cccCh-------HHHHHH-HHHHHHHHHHHHHH
Confidence 3456777778888888888888888776520 0000 00000 000001 01133444555555
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHH
Q 035749 140 LCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGA 219 (405)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 219 (405)
+.+.|++++|+..++++++.. +.+...+..+..+|...|++++|...|+++.+.. +.+...+..+..++...++.+++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555543 3344555555555555555555555555555543 23444444444444444444444
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.50 E-value=1.3e-06 Score=64.31 Aligned_cols=100 Identities=13% Similarity=0.094 Sum_probs=63.1
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-------CC----------CCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 035749 59 DAVIYTTIIDGLCKEGFVDKAKELLLQMKDK-------NI----------NPDVVTYNSVIRGFCYANDSNEAKRLFIEM 121 (405)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 121 (405)
....+......+.+.|++++|+..|++.... .. +.+...|..+..++.+.|++++|+..+++.
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4667888899999999999999999988764 00 112345555555566666666666666655
Q ss_pred HHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 122 MDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 122 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
++..+. +...|..+..++...|++++|...|++.++.
T Consensus 90 l~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 90 LKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 554322 4555555555566666666666666555554
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.50 E-value=4.8e-07 Score=62.45 Aligned_cols=83 Identities=17% Similarity=0.108 Sum_probs=72.6
Q ss_pred ChHhHHHHHHhhcC--CCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHH
Q 035749 1 MEAAALFTKLKAFG--CEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDK 78 (405)
Q Consensus 1 ~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 78 (405)
++|+..|+...+.+ -+.+..++..+..++...|++++|+..|+++++.. |.++.++..+..++...|++++
T Consensus 7 ~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 7 AQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-------PNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCchHHHHHHHHHHHHcCCHHH
Confidence 57899999999874 23456789999999999999999999999999986 5668899999999999999999
Q ss_pred HHHHHHHHHhCC
Q 035749 79 AKELLLQMKDKN 90 (405)
Q Consensus 79 a~~~~~~~~~~~ 90 (405)
|+..+++.....
T Consensus 80 A~~~~~~al~~~ 91 (117)
T 3k9i_A 80 GVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 999999988763
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.48 E-value=2.4e-06 Score=61.11 Aligned_cols=104 Identities=12% Similarity=-0.056 Sum_probs=70.0
Q ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCccc-----ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----
Q 035749 19 VITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVV-----CKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK---- 89 (405)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 89 (405)
...+......+...|++++|+..|+++++..+..... .+.+...|..+..++.+.|++++|+..+++.++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 4457778888999999999999999999876421000 0012337777777777777777777777777664
Q ss_pred ---CCCCChHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 035749 90 ---NINPDVVTY----NSVIRGFCYANDSNEAKRLFIEMMD 123 (405)
Q Consensus 90 ---~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (405)
+ |.+...| .....++...|++++|+..|++.++
T Consensus 91 ~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 GELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3 2344555 6666666666666666666666654
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.47 E-value=8.3e-07 Score=74.06 Aligned_cols=149 Identities=11% Similarity=-0.026 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHH
Q 035749 19 VITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTY 98 (405)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (405)
...+..+...+.+.|++++|+..|+++++.. |+... +...++++++...+ . ..+|
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--------p~~~~-------~~~~~~~~~~~~~l---~-------~~~~ 233 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--------GDDFM-------FQLYGKYQDMALAV---K-------NPCH 233 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--------CHHHH-------HTCCHHHHHHHHHH---H-------THHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--------ccchh-------hhhcccHHHHHHHH---H-------HHHH
Confidence 3457788888999999999999999998754 33221 11122222222211 1 1355
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHc
Q 035749 99 NSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDG-FCL 177 (405)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 177 (405)
..+..++.+.|++++|+..+++.++... .+...+..+..+|...|++++|...|+++.+.. +.+...+..+..+ ...
T Consensus 234 ~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~ 311 (338)
T 2if4_A 234 LNIAACLIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQE 311 (338)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHH
Confidence 6666666666666666666666665532 255566666666666677777776666665542 2233444444443 223
Q ss_pred cCCHHHHHHHHHHHHhc
Q 035749 178 TGRVNRAKELFVSMESM 194 (405)
Q Consensus 178 ~~~~~~a~~~~~~~~~~ 194 (405)
.+..+++...|..+...
T Consensus 312 ~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 312 KALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHhhCC
Confidence 34455666666666544
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.38 E-value=2.4e-06 Score=74.35 Aligned_cols=131 Identities=9% Similarity=-0.059 Sum_probs=88.5
Q ss_pred HHHhcCchHHHHHHHHHHHcCCCC-CcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----C--CCCChHHHH
Q 035749 28 GLCRTGHTIVALNLFEEMINGNGE-FGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK-----N--INPDVVTYN 99 (405)
Q Consensus 28 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~ 99 (405)
.+...|++++|+.+++++++.... ++...+....+++.|+..|...|++++|..++++..+. | .+....+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356789999999999998765322 22223345678999999999999999999999887542 2 122345677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-----CCC--ccHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 035749 100 SVIRGFCYANDSNEAKRLFIEMMDQ-----GVQ--PNVVTFSVIMDELCKNGKMEEASQLLELMIQ 158 (405)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 158 (405)
.|...|...|++++|+.++++.+.. |.. ....+...+..++...+.+++|+..+..+.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888776541 221 1223344455555566666666666666654
No 194
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.38 E-value=8.8e-06 Score=57.83 Aligned_cols=112 Identities=11% Similarity=-0.079 Sum_probs=88.9
Q ss_pred cccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh----cCCHHH
Q 035749 248 IHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCK----SGRLKI 323 (405)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 323 (405)
.+++++|...|++..+.+ .++.. +...|...+..++|.+.|++..+.+ ++..+..+...|.. .+++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 357888999999888877 33333 6777777788888999999888764 56777888888887 788999
Q ss_pred HHHHHhhccCCCcCccHHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCC
Q 035749 324 AWELFHSLPRGVLIADVVTYNIMIHALCA----DGKMDKAHDLFLDMEAKG 370 (405)
Q Consensus 324 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 370 (405)
|...|++..+.+ ++..+..|...|.. .+++++|...|++..+.|
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 999998887753 56777788888887 788999999999888875
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.37 E-value=2.7e-06 Score=70.99 Aligned_cols=149 Identities=10% Similarity=-0.024 Sum_probs=78.8
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 035749 200 VFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDG 279 (405)
Q Consensus 200 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 279 (405)
...+..+...+.+.|++++|+..|++.+.. .|+.. .+...++..++...+. ...+..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 445566667777777777777777777664 23322 1223344444332221 1366777888
Q ss_pred HhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHH-HHcCCCHHH
Q 035749 280 LCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHA-LCADGKMDK 358 (405)
Q Consensus 280 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~ 358 (405)
+.+.|++++|+..++++.... +.+...+..++.+|...|++++|...|+++.+... .+...+..+... ....+..+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p-~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP-DDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 888889999988888888775 55778888888888888999999888888876422 244455555544 234556677
Q ss_pred HHHHHHHHHhC
Q 035749 359 AHDLFLDMEAK 369 (405)
Q Consensus 359 A~~~~~~~~~~ 369 (405)
+...|++|...
T Consensus 318 a~~~~~~~l~~ 328 (338)
T 2if4_A 318 QKEMYKGIFKG 328 (338)
T ss_dssp -----------
T ss_pred HHHHHHHhhCC
Confidence 77888887764
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.35 E-value=2.6e-05 Score=55.36 Aligned_cols=110 Identities=9% Similarity=-0.044 Sum_probs=58.0
Q ss_pred chHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHh----cC
Q 035749 34 HTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCY----AN 109 (405)
Q Consensus 34 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 109 (405)
++++|+.+|+++.+.+ .+... +...|...+.+++|++.|++..+.| ++..+..|...|.. .+
T Consensus 10 d~~~A~~~~~~aa~~g-------~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~ 75 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-------EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKK 75 (138)
T ss_dssp HHHHHHHHHHHHHHTT-------CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCC
T ss_pred CHHHHHHHHHHHHcCC-------CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCc
Confidence 4556666666665544 12222 4444445555555666666655543 45555555555555 45
Q ss_pred CHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHc----CCCHHHHHHHHHHHHHcC
Q 035749 110 DSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCK----NGKMEEASQLLELMIQIG 160 (405)
Q Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 160 (405)
++++|..+|++..+.| +...+..+...|.. .+++++|..++++..+.|
T Consensus 76 d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 76 DLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5566666665555543 33444445555554 455555555555555544
No 197
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.35 E-value=1.3e-05 Score=57.39 Aligned_cols=98 Identities=12% Similarity=0.002 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C-----Ch-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 035749 60 AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNIN-P-----DV-----VTYNSVIRGFCYANDSNEAKRLFIEMMDQ---- 124 (405)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 124 (405)
...+......+.+.|++++|+..|++.++.... | +. ..|..+..++.+.|++++|+..+++.++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 456677777888889999999999888775311 0 11 15555555555555655555555555543
Q ss_pred ---CCCccHhhH----HHHHHHHHcCCCHHHHHHHHHHHHH
Q 035749 125 ---GVQPNVVTF----SVIMDELCKNGKMEEASQLLELMIQ 158 (405)
Q Consensus 125 ---~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 158 (405)
.+. +...| .....++...|++++|+..|++.++
T Consensus 91 ~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 GELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 211 23333 4444444444444444444444443
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.33 E-value=6.7e-06 Score=56.35 Aligned_cols=81 Identities=14% Similarity=0.029 Sum_probs=67.9
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHH
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAK 80 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (405)
++|+..|+...+.. +.+...+..+...+...|++++|+..|+++++.. +.+...|..+..++...|++++|.
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~ 73 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-------PTYSVAWKWLGKTLQGQGDRAGAR 73 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 46788888888765 4567788889999999999999999999998875 456778888999999999999999
Q ss_pred HHHHHHHhC
Q 035749 81 ELLLQMKDK 89 (405)
Q Consensus 81 ~~~~~~~~~ 89 (405)
..|++..+.
T Consensus 74 ~~~~~al~~ 82 (115)
T 2kat_A 74 QAWESGLAA 82 (115)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999888764
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.30 E-value=3.5e-06 Score=57.23 Aligned_cols=93 Identities=13% Similarity=0.021 Sum_probs=67.5
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPD--- 94 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--- 94 (405)
+...|..+...+...|++++|+..|+++++.. |.+...+..+..++...|++++|+..+++..+.. +.+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 74 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-------PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHV 74 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHH
Confidence 45677788888888889999999998888765 4567788888888888888888888888888763 223
Q ss_pred ---hHHHHHHHHHHHhcCCHHHHHHHH
Q 035749 95 ---VVTYNSVIRGFCYANDSNEAKRLF 118 (405)
Q Consensus 95 ---~~~~~~l~~~~~~~~~~~~a~~~~ 118 (405)
...+..+..++...|+.+.|...+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 75 AIRSKLQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhHhHH
Confidence 445555555555555555544433
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.29 E-value=8.3e-07 Score=60.44 Aligned_cols=94 Identities=15% Similarity=0.019 Sum_probs=56.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-------HH
Q 035749 304 DIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPD-------CV 376 (405)
Q Consensus 304 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~ 376 (405)
+...+..++..+...|++++|...|++..+.. +.+...+..+..++...|++++|+..++++++. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 34455666666666677777776666665532 224566666666777777777777777776664 232 44
Q ss_pred HHHHHHHHHHccCchhHHHHHHHH
Q 035749 377 AFNTLMLGCIRNNETSKVVELLHR 400 (405)
Q Consensus 377 ~~~~l~~~~~~~g~~~~a~~~~~~ 400 (405)
.+..+..++...|++++|...+++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHH
Confidence 455555666666666655554443
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.28 E-value=7.9e-06 Score=71.18 Aligned_cols=88 Identities=13% Similarity=0.007 Sum_probs=43.4
Q ss_pred HHhcCChHHHHHHHHHHHhC-----C--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C--CCccHhhHHH
Q 035749 70 LCKEGFVDKAKELLLQMKDK-----N--INPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQ-----G--VQPNVVTFSV 135 (405)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ 135 (405)
+..+|++++|+.++++..+. | .+....+++.|...|...|++++|+.++++.+.. | .+....+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 33456666666666555432 1 0112344555556666666666666555554431 1 1112334555
Q ss_pred HHHHHHcCCCHHHHHHHHHHHH
Q 035749 136 IMDELCKNGKMEEASQLLELMI 157 (405)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~ 157 (405)
|...|...|++++|+.++++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555555555555555544
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.28 E-value=9.3e-06 Score=52.74 Aligned_cols=80 Identities=13% Similarity=0.132 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHH
Q 035749 19 VITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTY 98 (405)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (405)
...+..+...+...|++++|+..|+++++.. +.+..++..+..++...|++++|...+++..+.. |.+...+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~ 80 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAK 80 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHH
Confidence 3455666666666667777777666666553 3445566666666666666666666666666543 3345555
Q ss_pred HHHHHHHH
Q 035749 99 NSVIRGFC 106 (405)
Q Consensus 99 ~~l~~~~~ 106 (405)
..+..++.
T Consensus 81 ~~l~~~~~ 88 (91)
T 1na3_A 81 QNLGNAKQ 88 (91)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.20 E-value=1.6e-05 Score=54.46 Aligned_cols=80 Identities=13% Similarity=0.077 Sum_probs=57.7
Q ss_pred HHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 035749 37 VALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKR 116 (405)
Q Consensus 37 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 116 (405)
.|+..|+++++.. |.+...+..+...+...|++++|+..|++..+.. +.+...|..+..++...|++++|..
T Consensus 3 ~a~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~ 74 (115)
T 2kat_A 3 AITERLEAMLAQG-------TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQ 74 (115)
T ss_dssp CHHHHHHHHHTTT-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 4667777777664 4566777777777778888888888887777654 4456677777777777777777777
Q ss_pred HHHHHHHC
Q 035749 117 LFIEMMDQ 124 (405)
Q Consensus 117 ~~~~~~~~ 124 (405)
.|++..+.
T Consensus 75 ~~~~al~~ 82 (115)
T 2kat_A 75 AWESGLAA 82 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77776653
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.18 E-value=6e-06 Score=58.95 Aligned_cols=87 Identities=13% Similarity=-0.070 Sum_probs=69.3
Q ss_pred HhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCCh----------HHHHHHHHHHHhCCCCCChHHHH
Q 035749 30 CRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFV----------DKAKELLLQMKDKNINPDVVTYN 99 (405)
Q Consensus 30 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~ 99 (405)
.+.+.+++|++.++.+++.+ |.++..|..+..++...+++ ++|+..|++.++.+ |.+..+|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-------P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~ 84 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-------PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVW 84 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHH
Confidence 45678899999999999986 67889999999999988775 48888888888775 45677888
Q ss_pred HHHHHHHhcC-----------CHHHHHHHHHHHHHC
Q 035749 100 SVIRGFCYAN-----------DSNEAKRLFIEMMDQ 124 (405)
Q Consensus 100 ~l~~~~~~~~-----------~~~~a~~~~~~~~~~ 124 (405)
.+..+|...| ++++|++.|++.++.
T Consensus 85 ~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 85 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 8888887764 677777777777664
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.11 E-value=5.4e-05 Score=49.00 Aligned_cols=61 Identities=16% Similarity=0.278 Sum_probs=26.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 035749 133 FSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESM 194 (405)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (405)
+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3334444444444444444444444432 223334444444444444444444444444443
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.09 E-value=1.2e-05 Score=57.36 Aligned_cols=93 Identities=14% Similarity=0.028 Sum_probs=76.9
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCch----------HHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHH
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHT----------IVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGL 70 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 70 (405)
++|++.++...+.. |.+...|..+..++...+++ ++|+..|+++++.+ |....+|..+..+|
T Consensus 19 eeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-------P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 19 EQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-------PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-------cCcHHHHHHHHHHH
Confidence 47888999988875 66888999999999988775 59999999999986 56788999999999
Q ss_pred HhcC-----------ChHHHHHHHHHHHhCCCCCChHHHHHHHH
Q 035749 71 CKEG-----------FVDKAKELLLQMKDKNINPDVVTYNSVIR 103 (405)
Q Consensus 71 ~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 103 (405)
...| ++++|++.|++..+. .|+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 9875 899999999999986 566665554444
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.01 E-value=3.4e-05 Score=51.19 Aligned_cols=67 Identities=18% Similarity=0.111 Sum_probs=56.4
Q ss_pred CCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 035749 16 EPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK 89 (405)
Q Consensus 16 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (405)
+.++..+..+...+...|++++|+..|+++++.+ |.+..+|..+..++...|++++|.+.|++..+.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-------PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4467788889999999999999999999998876 456778899999999999999999999887653
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.00 E-value=0.00024 Score=58.43 Aligned_cols=136 Identities=7% Similarity=-0.030 Sum_probs=73.5
Q ss_pred CCCChhHHHHHHHHHH--hc---CchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHh---cC-Ch-HHHH---H
Q 035749 15 CEPNVITYSTLINGLC--RT---GHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCK---EG-FV-DKAK---E 81 (405)
Q Consensus 15 ~~~~~~~~~~l~~~~~--~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~-~~-~~a~---~ 81 (405)
.+.+..+|...+++.. .. .+..+|+.+|+++++.+ |.....|..+..++.. .+ .. .... .
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-------P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~ 262 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-------PEFTYARAEKALVDIVRHSQHPLDEKQLAALNT 262 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHH
Confidence 4667788888876654 33 33578999999999987 3445556555544431 01 00 0110 1
Q ss_pred HHHHHHh-CCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 82 LLLQMKD-KNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 82 ~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
.++.... ...+.++.+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|...+++....
T Consensus 263 a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 263 EIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 1111100 0113455555555555555566666666666665553 44445555555555666666666666665554
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.91 E-value=9.3e-05 Score=49.03 Aligned_cols=66 Identities=12% Similarity=0.143 Sum_probs=47.1
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 035749 57 KPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMD 123 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (405)
|.++..+..+..++...|++++|+..|++..+.. |.+...|..+..++...|++++|...|++.++
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4456677777777777777777777777777664 44566777777777777777777777777654
No 210
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.74 E-value=0.00029 Score=60.48 Aligned_cols=100 Identities=13% Similarity=-0.006 Sum_probs=74.4
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHcCCCC-CcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----C--CCCCh
Q 035749 24 TLINGLCRTGHTIVALNLFEEMINGNGE-FGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK-----N--INPDV 95 (405)
Q Consensus 24 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~ 95 (405)
..+..+...|++++|+.+++++++.... ++...+....+++.++.+|...|++++|+.++++.... | .|...
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 3455677889999999999999875422 22223344678999999999999999999999987642 1 12234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 035749 96 VTYNSVIRGFCYANDSNEAKRLFIEMMD 123 (405)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (405)
.+++.|...|...|++++|+.++++..+
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5677888888888888888888887764
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.68 E-value=0.00013 Score=62.50 Aligned_cols=93 Identities=5% Similarity=-0.130 Sum_probs=66.8
Q ss_pred hcCchHHHHHHHHHHHcCCCC-CcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----C--CCCChHHHHHHH
Q 035749 31 RTGHTIVALNLFEEMINGNGE-FGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK-----N--INPDVVTYNSVI 102 (405)
Q Consensus 31 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~ 102 (405)
..|++++|+.+++++++.... ++...+....+++.|..+|...|++++|+.++++..+. | .+....+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 467889999999988764321 22223334678899999999999999999999887542 2 122345677888
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 035749 103 RGFCYANDSNEAKRLFIEMMD 123 (405)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~ 123 (405)
..|...|++++|+.++++.++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 888888888888888877654
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.60 E-value=0.0019 Score=53.26 Aligned_cols=74 Identities=11% Similarity=0.039 Sum_probs=57.2
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 035749 302 ELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFN 379 (405)
Q Consensus 302 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 379 (405)
+.++.++..+...+...|++++|...++++...+ |+...|..+...+...|++++|.+.++++... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 5677777777777777788888888888887753 67777777788888888888888888888874 66666654
No 213
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.60 E-value=0.0075 Score=47.68 Aligned_cols=85 Identities=16% Similarity=0.229 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHcc-----CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhc-CCh
Q 035749 146 MEEASQLLELMIQIGVRPN---AFVYNTLMDGFCLT-----GRVNRAKELFVSMESMGCKHNVFSYSILINGYCKN-KEI 216 (405)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 216 (405)
...|...+++.++. .|+ ...|..+...|... |+.++|.+.|++..+.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45666677777766 344 45677777777774 77888888888877774222366666677777764 777
Q ss_pred HHHHHHHHHHHhCCCC
Q 035749 217 EGALSLYSEMLSKGIK 232 (405)
Q Consensus 217 ~~a~~~~~~~~~~~~~ 232 (405)
+.+.+.+++.+.....
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 8888888887776444
No 214
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.60 E-value=0.0012 Score=42.79 Aligned_cols=68 Identities=12% Similarity=0.010 Sum_probs=48.7
Q ss_pred CCChhHHHHHHHHHHhcCc---hHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 035749 16 EPNVITYSTLINGLCRTGH---TIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKN 90 (405)
Q Consensus 16 ~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 90 (405)
+.++..+..+..++...++ .++|..+++++++.+ |.++.....+...+.+.|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-------p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-------PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4566677777777654444 677888888877765 5567777777777778888888888888877663
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.51 E-value=0.001 Score=43.63 Aligned_cols=67 Identities=19% Similarity=0.106 Sum_probs=53.2
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHH
Q 035749 24 TLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAV-IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTY 98 (405)
Q Consensus 24 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (405)
.....+...|++++|+..|+++++.. +.+.. .+..+..++...|++++|...|++..+.. +.+...+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 72 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTE-------PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN-PDSPALQ 72 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-------SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHH
Confidence 35667788899999999999998875 45667 88899999999999999999999988764 3334443
No 216
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.50 E-value=0.001 Score=44.25 Aligned_cols=80 Identities=10% Similarity=-0.021 Sum_probs=61.1
Q ss_pred CChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChH
Q 035749 17 PNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVV 96 (405)
Q Consensus 17 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 96 (405)
.++..+..+...+.+.|++..|+.+|+.+++..........+...++..+..++.+.|+++.|+..++++.+.. |.+..
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~-P~~~~ 81 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQR 81 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHH
Confidence 46667788999999999999999999998875311100013567889999999999999999999999998763 33444
Q ss_pred H
Q 035749 97 T 97 (405)
Q Consensus 97 ~ 97 (405)
+
T Consensus 82 ~ 82 (104)
T 2v5f_A 82 A 82 (104)
T ss_dssp H
T ss_pred H
Confidence 3
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.41 E-value=0.0013 Score=46.39 Aligned_cols=79 Identities=9% Similarity=-0.069 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC---CHHHHHHHHhhccCCCcCc--cHHHHHHHHHHHHcCCCHHHHHHH
Q 035749 288 EALELFRTLRILKCELDIRSYSCLIDGLCKSG---RLKIAWELFHSLPRGVLIA--DVVTYNIMIHALCADGKMDKAHDL 362 (405)
Q Consensus 288 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~ 362 (405)
.+.+-|.+....+ +++..+...+..++++.+ +.++++.+|+.+.+.. .| +...+-.+..++.+.|++++|.+.
T Consensus 16 ~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 3444444444433 345555555555555555 3445555555555432 12 234444455555666666666666
Q ss_pred HHHHHh
Q 035749 363 FLDMEA 368 (405)
Q Consensus 363 ~~~~~~ 368 (405)
++.+++
T Consensus 94 ~~~lL~ 99 (152)
T 1pc2_A 94 VRGLLQ 99 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666665
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.39 E-value=0.001 Score=43.64 Aligned_cols=56 Identities=20% Similarity=0.199 Sum_probs=28.3
Q ss_pred HHHHccccHHHHHHHHHHHHHcCCCccHH-HHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 035749 243 IGLFEIHQVERAFKLFDEMQRHGVAADTW-AYRTFIDGLCKNGYIVEALELFRTLRIL 299 (405)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 299 (405)
..+...|++++|...++++.+.. +.+.. .+..+..++...|++++|...|+++...
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34444555555555555555442 23334 4455555555555555555555555544
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.39 E-value=0.0013 Score=56.38 Aligned_cols=62 Identities=13% Similarity=-0.067 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHc-----C--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 035749 131 VTFSVIMDELCKNGKMEEASQLLELMIQI-----G--VRPNAFVYNTLMDGFCLTGRVNRAKELFVSME 192 (405)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 192 (405)
.+++.++.+|...|++++|+.++++++.. | .+....+++.+...|...|++++|+.+++++.
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34445555555555555555555544432 1 11122344555555555555555555555543
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.39 E-value=0.0006 Score=58.43 Aligned_cols=84 Identities=8% Similarity=-0.051 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHhc-----C--CCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhC-----C-CCCc-hhhHHHHHHH
Q 035749 179 GRVNRAKELFVSMESM-----G--CKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK-----G-IKPT-VVTYNTLFIG 244 (405)
Q Consensus 179 ~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l~~~ 244 (405)
|++++|+.++++..+. | .+....+++.+..+|...|++++|+.++++.+.. | ..|+ ..+++.+...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4555555555554331 1 1112345556666666666666666666655431 1 1222 2345666666
Q ss_pred HHccccHHHHHHHHHHHH
Q 035749 245 LFEIHQVERAFKLFDEMQ 262 (405)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~ 262 (405)
|...|++++|..+++++.
T Consensus 392 ~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHH
Confidence 666666666666666554
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.31 E-value=0.0027 Score=41.05 Aligned_cols=68 Identities=13% Similarity=0.037 Sum_probs=47.6
Q ss_pred cccHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 035749 57 KPDAVIYTTIIDGLCKEGF---VDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQG 125 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 125 (405)
+.++..+..+..++...++ .++|..++++..+.. |.++.....+...+.+.|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4566777777777665444 577777777777664 5566777777777777777777777777777653
No 222
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.24 E-value=0.0079 Score=41.89 Aligned_cols=105 Identities=12% Similarity=0.081 Sum_probs=70.2
Q ss_pred CCChhHHHHHHHHHHhcCch------HHHHHHHHHHHcCCCCCcccccccH-HHHHHHHHHH------HhcCChHHHHHH
Q 035749 16 EPNVITYSTLINGLCRTGHT------IVALNLFEEMINGNGEFGVVCKPDA-VIYTTIIDGL------CKEGFVDKAKEL 82 (405)
Q Consensus 16 ~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~------~~~~~~~~a~~~ 82 (405)
+.|..+|-..+..+-+.|++ ++.+++|+++...- ||+. ..|...|..+ ...++.++|.++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~-------Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~v 82 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL-------PPDKYGQNESFARIQVRFAELKAIQEPDDARDY 82 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS-------CGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC-------CccccccHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 45778899999998888999 89999999998864 4431 1222222211 233677777777
Q ss_pred HHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 035749 83 LLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQP 128 (405)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 128 (405)
|+.+++.+-.- ...|....+.-.+.|++.+|.+++...+..+..|
T Consensus 83 y~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 83 FQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 77776543222 5566666666667777777777777777766554
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.17 E-value=0.007 Score=42.74 Aligned_cols=82 Identities=12% Similarity=0.031 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCC-CCccHhhHHHHHHHHHcCCCHHHHHHH
Q 035749 77 DKAKELLLQMKDKNINPDVVTYNSVIRGFCYAN---DSNEAKRLFIEMMDQG-VQPNVVTFSVIMDELCKNGKMEEASQL 152 (405)
Q Consensus 77 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 152 (405)
..+.+-|.+..+.+ +++..+...+..++++.+ ++++++.+++...+.+ +.-+...+..+.-++.+.|++++|.+.
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34455555555554 467777777888888777 5568888888877764 111355556667777888888888888
Q ss_pred HHHHHHc
Q 035749 153 LELMIQI 159 (405)
Q Consensus 153 ~~~~~~~ 159 (405)
++.+++.
T Consensus 94 ~~~lL~i 100 (152)
T 1pc2_A 94 VRGLLQT 100 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 8888776
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.02 E-value=0.011 Score=39.18 Aligned_cols=27 Identities=19% Similarity=0.161 Sum_probs=11.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 035749 167 VYNTLMDGFCLTGRVNRAKELFVSMES 193 (405)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (405)
++..+..++.+.|+++.|...++++.+
T Consensus 48 i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 48 VLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 334444444444444444444444433
No 225
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.01 E-value=0.059 Score=50.79 Aligned_cols=45 Identities=11% Similarity=0.197 Sum_probs=24.0
Q ss_pred HccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHH
Q 035749 176 CLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEM 226 (405)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 226 (405)
...|+++.|.++.+.+ .+...|..+...+.+.++++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3455555555553321 24455555666666666666665555544
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.062 Score=39.04 Aligned_cols=129 Identities=11% Similarity=0.110 Sum_probs=84.4
Q ss_pred HHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHH
Q 035749 243 IGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLK 322 (405)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 322 (405)
....+.|+++.|.++.+.+ .+...|..+.......|+++-|...|.+... +..+.-.|...|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 4456788888888886654 3677888888888888998888888887653 334445566778877
Q ss_pred HHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHh
Q 035749 323 IAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRM 401 (405)
Q Consensus 323 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 401 (405)
...++-+.....| -++....++...|++++++++|.+.-. .|.. +......|-.+.|.++.+++
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 7766655544332 245556667778999999988855432 2211 11122346667777776654
No 227
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.94 E-value=0.013 Score=39.74 Aligned_cols=85 Identities=7% Similarity=-0.114 Sum_probs=56.4
Q ss_pred CChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHH---HHHHHhhccCCCcC-ccHHHHHHHHHHHHcCCCHHHH
Q 035749 284 GYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKI---AWELFHSLPRGVLI-ADVVTYNIMIHALCADGKMDKA 359 (405)
Q Consensus 284 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A 359 (405)
.....+.+-|......+ .++..+-..+++++.+..+... ++.+++.+.+.+.+ -.....-.|..++.+.|++++|
T Consensus 15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34445555555555545 4677777777778877776655 77777777765311 1344455667778888888888
Q ss_pred HHHHHHHHhC
Q 035749 360 HDLFLDMEAK 369 (405)
Q Consensus 360 ~~~~~~~~~~ 369 (405)
.+.++.+++.
T Consensus 94 ~~~~~~lL~~ 103 (126)
T 1nzn_A 94 LKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888888874
No 228
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.90 E-value=0.029 Score=52.87 Aligned_cols=154 Identities=16% Similarity=0.152 Sum_probs=89.3
Q ss_pred HHccCCHHHHHH-HHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHH
Q 035749 175 FCLTGRVNRAKE-LFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVER 253 (405)
Q Consensus 175 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 253 (405)
....+++++|.+ ++..+ ++......++..+.+.|.++.|.++.+. |. .-.......|+++.
T Consensus 609 ~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHHH
Confidence 345667777655 43211 1022236666667777777777655521 11 11233456777777
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 035749 254 AFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPR 333 (405)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 333 (405)
|.++.+. ..+...+..+...+.+.++++.|.+.|.++.. +..+...+...|+.+...++-+....
T Consensus 671 A~~~~~~------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 671 ARDLLTD------ESAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHHTT------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHh------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 7776432 23566777788888888888888888776642 23344455556776665555544443
Q ss_pred CCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 035749 334 GVLIADVVTYNIMIHALCADGKMDKAHDLFLDME 367 (405)
Q Consensus 334 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 367 (405)
.+ .++....+|.+.|++++|++++.++.
T Consensus 736 ~~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 736 TG------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp TT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred cC------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 32 13444445666777777777776654
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.90 E-value=0.033 Score=38.89 Aligned_cols=103 Identities=15% Similarity=0.144 Sum_probs=65.9
Q ss_pred ccccHHHHHHHHHHHHhcCCh------HHHHHHHHHHHhCCCCCChH-HHHHHHHH------HHhcCCHHHHHHHHHHHH
Q 035749 56 CKPDAVIYTTIIDGLCKEGFV------DKAKELLLQMKDKNINPDVV-TYNSVIRG------FCYANDSNEAKRLFIEMM 122 (405)
Q Consensus 56 ~~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~~~~~~a~~~~~~~~ 122 (405)
.+.+.++|-..+...-+.|++ ++..++|++.... +||+.. .|...+.. +...++.++|.++|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 356778888888888888888 8888888888764 455421 11111111 123367777777777776
Q ss_pred HCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 035749 123 DQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIG 160 (405)
Q Consensus 123 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (405)
+.. +--...|...+..-.+.|+...|.+++.+.+..+
T Consensus 88 ~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 88 ANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 542 2225666666666667777777777777777665
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.87 E-value=0.12 Score=41.01 Aligned_cols=87 Identities=14% Similarity=0.112 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHCCCC-ccHhhHHHHHHHHHcC-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-CCHHH
Q 035749 111 SNEAKRLFIEMMDQGVQ-PNVVTFSVIMDELCKN-----GKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLT-GRVNR 183 (405)
Q Consensus 111 ~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ 183 (405)
...|...+++.++.... .+...|..+...|... |+.++|.+.|++.++.+..-+..++......++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 46777888888875322 1356888899999884 99999999999999985323478888889988885 99999
Q ss_pred HHHHHHHHHhcCCC
Q 035749 184 AKELFVSMESMGCK 197 (405)
Q Consensus 184 a~~~~~~~~~~~~~ 197 (405)
+.+.+++.......
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 99999999987544
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.70 E-value=0.085 Score=38.32 Aligned_cols=102 Identities=11% Similarity=0.147 Sum_probs=67.2
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHH
Q 035749 69 GLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEE 148 (405)
Q Consensus 69 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 148 (405)
...+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 345678888888887665 2577888888888888888888888877542 3344555566677776
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 035749 149 ASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSM 191 (405)
Q Consensus 149 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 191 (405)
..++-+.....| -++....++...|+++++.++|.+.
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 666655555444 1334444555677777777777543
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.57 E-value=0.093 Score=35.85 Aligned_cols=139 Identities=12% Similarity=0.040 Sum_probs=71.6
Q ss_pred HhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcC
Q 035749 30 CRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYAN 109 (405)
Q Consensus 30 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 109 (405)
.-.|..++..++..+.... .+..-++-+|--....-+-+-..++++.+-+. .|. ...|
T Consensus 18 ildG~v~qGveii~k~~~s---------sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~ 75 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---------STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQ 75 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---------SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCS
T ss_pred HHhhhHHHHHHHHHHHcCC---------CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------Hhhh
Confidence 3456666666666665542 23444555555555545555555555444322 111 1233
Q ss_pred CHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 035749 110 DSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFV 189 (405)
Q Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 189 (405)
++......+-.+- .+...+...+..+...|+-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.
T Consensus 76 NlKrVi~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 76 NLKSVVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp CTHHHHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 3333333332221 13344455555666666666666666664332 25566666666666666666666666666
Q ss_pred HHHhcCC
Q 035749 190 SMESMGC 196 (405)
Q Consensus 190 ~~~~~~~ 196 (405)
++-+.|+
T Consensus 150 ~AC~kG~ 156 (172)
T 1wy6_A 150 EACKKGE 156 (172)
T ss_dssp HHHHTTC
T ss_pred HHHHhhh
Confidence 6666553
No 233
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.51 E-value=0.1 Score=35.64 Aligned_cols=82 Identities=15% Similarity=0.039 Sum_probs=57.4
Q ss_pred cCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHH
Q 035749 318 SGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVEL 397 (405)
Q Consensus 318 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 397 (405)
+|+.......+-.+-. +.......+.....+|+-++-.+++..+... -+|++.....+..+|.+.|+..+|.++
T Consensus 74 C~NlKrVi~C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eL 147 (172)
T 1wy6_A 74 CQNLKSVVECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTL 147 (172)
T ss_dssp CSCTHHHHHHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcHHHHHHHHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHH
Confidence 4444444444443322 4556667777788888888888888886442 577788888888888888888888888
Q ss_pred HHHhhhcC
Q 035749 398 LHRMDERN 405 (405)
Q Consensus 398 ~~~~~~~~ 405 (405)
+.+.-++|
T Consensus 148 l~~AC~kG 155 (172)
T 1wy6_A 148 LIEACKKG 155 (172)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhh
Confidence 88877765
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.44 E-value=0.034 Score=37.73 Aligned_cols=82 Identities=11% Similarity=0.023 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCC-ccHhhHHHHHHHHHcCCCHHHHHHH
Q 035749 77 DKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNE---AKRLFIEMMDQGVQ-PNVVTFSVIMDELCKNGKMEEASQL 152 (405)
Q Consensus 77 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 152 (405)
..+.+-|.+....| .++..+-..+..++++..+... ++.+++.+.+.+.+ -.......+.-++.+.|++++|.+.
T Consensus 18 ~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 18 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34444454444433 3666666677777777665544 67777776665311 1334444556667777777777777
Q ss_pred HHHHHHc
Q 035749 153 LELMIQI 159 (405)
Q Consensus 153 ~~~~~~~ 159 (405)
++.+++.
T Consensus 97 ~~~lL~~ 103 (126)
T 1nzn_A 97 VRGLLQT 103 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7777766
No 235
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.28 E-value=5.2e-06 Score=69.72 Aligned_cols=263 Identities=13% Similarity=0.126 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHH
Q 035749 61 VIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDEL 140 (405)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (405)
.+|..|..+....++..+|++.| ++. .|+..|..++....+.|.+++-.+.+...++..-.| ..=+.|+-+|
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsy---IkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSY---IKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSS---CCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHH---HhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHH
Confidence 34444444444444444444332 111 134444444444444455444444444433332222 2223444444
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHH
Q 035749 141 CKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGAL 220 (405)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 220 (405)
++.++..+.++++. .|+..-...+..-|...|.++.|.-+|..+. -|..|...+.+.|++..|.
T Consensus 127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~yq~AV 190 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAV 190 (624)
T ss_dssp HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGGSST
T ss_pred HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHHHHH
Confidence 44444333222211 2333333344444444444444443333221 1222333344444444443
Q ss_pred HHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC
Q 035749 221 SLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILK 300 (405)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 300 (405)
+.-++ ..+..||..+..+|...+.+.-|...--.++-. +.-+..++..|...|.+++.+.+++......
T Consensus 191 daArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglE 259 (624)
T 3lvg_A 191 DGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLE 259 (624)
T ss_dssp TTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST
T ss_pred HHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC
Confidence 32211 236678888888888888877665554444322 1223345667888899999999988887544
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCc-------cHHHHHHHHHHHHcCCCHHHHH
Q 035749 301 CELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIA-------DVVTYNIMIHALCADGKMDKAH 360 (405)
Q Consensus 301 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~ 360 (405)
......++.|+-.|++- ++++..+.++..-.+--.| ....|..++..|.+-.+++.|.
T Consensus 260 -rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 260 -RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp -TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred -chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 56788888888888866 6777777776644321122 2335777777777777777664
No 236
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.24 E-value=0.81 Score=43.07 Aligned_cols=267 Identities=11% Similarity=0.037 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------CccHh
Q 035749 61 VIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPD--VVTYNSVIRGFCYANDSNEAKRLFIEMMDQGV-------QPNVV 131 (405)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~ 131 (405)
..-....-+.+..|+.++++.++......+...+ ...=..+.-+.+..|..+++...+...+...- .+...
T Consensus 375 k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir 454 (963)
T 4ady_A 375 KFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLL 454 (963)
T ss_dssp HHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHH
T ss_pred HHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHH
Confidence 3334444456677888888888887765211122 22333444455566665667777666654311 01112
Q ss_pred hHHH--HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 035749 132 TFSV--IMDELCKNGKMEEASQLLELMIQIGVRPNAF--VYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILI 207 (405)
Q Consensus 132 ~~~~--l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 207 (405)
.-.. |..++.-.++ +++...+..++... .+... .-..+...+.-.|+.+....++..+.+.. ..+..-...+.
T Consensus 455 ~gAaLGLGla~~GS~~-eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalg 531 (963)
T 4ady_A 455 HGASLGIGLAAMGSAN-IEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVG 531 (963)
T ss_dssp HHHHHHHHHHSTTCCC-HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCC-HHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHH
Confidence 2222 3333333444 44555555555432 11111 12234445667777777777777766532 22222233333
Q ss_pred HHHhhcCChHHHHHHHHHHHhCCCCCchhhH--HHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCC
Q 035749 208 NGYCKNKEIEGALSLYSEMLSKGIKPTVVTY--NTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGY 285 (405)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 285 (405)
-++...|+.+.+..+.+.+.... .|....- ..+.-+|+..|+......++..+.... ..+..-...+.-++...|+
T Consensus 532 LGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~ 609 (963)
T 4ady_A 532 LALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRD 609 (963)
T ss_dssp HHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSS
T ss_pred HHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCC
Confidence 44556788888888888777641 2222211 233446777888877777888877642 2233333333334445677
Q ss_pred hHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCH-HHHHHHHhhccC
Q 035749 286 IVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRL-KIAWELFHSLPR 333 (405)
Q Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~ 333 (405)
.+.+.++++.+.+.+ .|....-..++.+....|.. .++.+.+..+..
T Consensus 610 ~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 610 YTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp CSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 666777776665544 45555444444555555553 567778877765
No 237
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.98 E-value=1.1 Score=42.25 Aligned_cols=297 Identities=11% Similarity=-0.002 Sum_probs=164.6
Q ss_pred HHHHHHHHhcCChHHH-HHHH-HHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCccHhhHHHHHHH
Q 035749 64 TTIIDGLCKEGFVDKA-KELL-LQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQG--VQPNVVTFSVIMDE 139 (405)
Q Consensus 64 ~~l~~~~~~~~~~~~a-~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 139 (405)
..+..++...|--.+. +... +.+.+. .+....-....-+.+..|+.++++..+...+..+ -.+....-..+.-+
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~--~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLG 420 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKA--QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLG 420 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHC--CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhcc--chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHH
Confidence 3455566666643322 2222 233332 2222223333445677889999988887766421 12222333334444
Q ss_pred HHcCCCHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHH--HccCCHHHHHHHHHHHHhcCCCCCh--hhHHHHHH
Q 035749 140 LCKNGKMEEASQLLELMIQIGV-------RPNAFVYNTLMDGF--CLTGRVNRAKELFVSMESMGCKHNV--FSYSILIN 208 (405)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~ 208 (405)
....|..+++..++...+...- .+....-..+.-+. .-.++ +++...+..+.... .... .+-..+..
T Consensus 421 li~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd-~~~~~~~AalALGl 498 (963)
T 4ady_A 421 LIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYND-SATSGEAAALGMGL 498 (963)
T ss_dssp HHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTC-CHHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcC-CHHHHHHHHHHHhh
Confidence 5566665677777777665421 01122223333333 33444 35555555555432 1111 12224455
Q ss_pred HHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHH--HHHHHHHhcCCCh
Q 035749 209 GYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAY--RTFIDGLCKNGYI 286 (405)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~ 286 (405)
.++..|+.+....++..+.+.. .-+..-...+.-++...|+.+.+..+++.+.... .|....- ..+.-+|+..|+.
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCH
T ss_pred hhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCH
Confidence 5677888888888888777642 2122222333344557788888888888877642 3333222 2344567788998
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCH-HHHHHHHHH
Q 035749 287 VEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKM-DKAHDLFLD 365 (405)
Q Consensus 287 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 365 (405)
....+++..+.... ..+......+.-++...|+.+.+.++++.+.+.+ .|.+..-..+..+....|+. .+++.++..
T Consensus 577 ~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~ 654 (963)
T 4ady_A 577 SAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDP 654 (963)
T ss_dssp HHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 87777988887642 3344444444455666788777888887776653 45555444555555555554 678888888
Q ss_pred HHh
Q 035749 366 MEA 368 (405)
Q Consensus 366 ~~~ 368 (405)
+..
T Consensus 655 L~~ 657 (963)
T 4ady_A 655 LTK 657 (963)
T ss_dssp HHT
T ss_pred Hcc
Confidence 875
No 238
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.82 E-value=6.4e-07 Score=75.01 Aligned_cols=166 Identities=14% Similarity=0.157 Sum_probs=109.9
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHH
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVT 97 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (405)
.+..|..+.++....+...+|++-|-++ .|+..|..++....+.|.+++-+..++-.++.. .++..
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~I 118 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYV 118 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--ccccc
Confidence 4567999999999999988887765433 356678999999999999999999998777653 34455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 035749 98 YNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCL 177 (405)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (405)
=+.|+.+|++.++..+-.+.+ ..||..-...+..-|...|.++.|.-+|..+.. |..|...+..
T Consensus 119 DteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~ 182 (624)
T 3lvg_A 119 ETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVH 182 (624)
T ss_dssp THHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSS
T ss_pred HHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHH
Confidence 568999999999876654433 235666667778888888888887776654422 2233334445
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHH
Q 035749 178 TGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGA 219 (405)
Q Consensus 178 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 219 (405)
.|++..|.+.-++ ..++.+|..+-.+|...+.+.-|
T Consensus 183 L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLA 218 (624)
T 3lvg_A 183 LGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLA 218 (624)
T ss_dssp CSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTT
T ss_pred HHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHH
Confidence 5555544432221 22344555555555555544443
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.45 E-value=0.25 Score=45.34 Aligned_cols=56 Identities=21% Similarity=0.067 Sum_probs=45.4
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 035749 276 FIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLP 332 (405)
Q Consensus 276 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 332 (405)
-+..+...|+++.|+.+-++..... |.+..+|..|+.+|...|+++.|+-.++.+.
T Consensus 343 Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 343 QTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3455667888999999988888764 6678889999999999999999988888764
No 240
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.07 E-value=0.33 Score=33.11 Aligned_cols=72 Identities=11% Similarity=0.036 Sum_probs=46.2
Q ss_pred CccHHHHHHHHHHHHhcCCH---HHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH
Q 035749 302 ELDIRSYSCLIDGLCKSGRL---KIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDC 375 (405)
Q Consensus 302 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 375 (405)
.|+..+-..+++++.++.+. .+++.+++.+.+.+..-....+-.+..++.+.|++++|.+..+.+++. .|+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCC
Confidence 56667777777777776654 356666666655432223455566667777788888888877777764 4543
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.94 E-value=1.6 Score=37.59 Aligned_cols=190 Identities=8% Similarity=0.102 Sum_probs=110.8
Q ss_pred cCCHHHHHHHHHHHHhc-----CCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhC-CCCCchhhHHHHHHHHH----c
Q 035749 178 TGRVNRAKELFVSMESM-----GCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK-GIKPTVVTYNTLFIGLF----E 247 (405)
Q Consensus 178 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~----~ 247 (405)
.|+++.|++.+..+.+. +..........++..|...++++...+.+..+... |..+ .....++..+. .
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhc
Confidence 37788888877666542 23445666778888999999999888877766553 3222 22233333322 1
Q ss_pred cccHHH--HHHHHHHHHH--cC-CCc---cHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCc-c----HHHHHHHHHH
Q 035749 248 IHQVER--AFKLFDEMQR--HG-VAA---DTWAYRTFIDGLCKNGYIVEALELFRTLRILKCEL-D----IRSYSCLIDG 314 (405)
Q Consensus 248 ~~~~~~--a~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~ 314 (405)
....+. -..+...... .| +-. .......+...+...|++.+|..++..+...-... + ...+...++.
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 222121 1111111110 11 111 12334566777888888888888888875431111 1 2456666777
Q ss_pred HHhcCCHHHHHHHHhhccC----CCcCcc--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 315 LCKSGRLKIAWELFHSLPR----GVLIAD--VVTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 315 ~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
|...+++.+|..+++++.. ....|+ ...+...+..+...++|.+|.+.|.++...
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 8888888888888877532 112222 234566667777788888888877777663
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.92 E-value=0.25 Score=45.32 Aligned_cols=52 Identities=15% Similarity=0.105 Sum_probs=33.8
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHh
Q 035749 349 ALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRM 401 (405)
Q Consensus 349 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 401 (405)
.+...|+++-|+.+-++.... .+-+..+|..|..+|...|+++.|+-.++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 345566777777777776664 3445667777777777777777776666554
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.70 E-value=0.26 Score=41.66 Aligned_cols=80 Identities=10% Similarity=0.085 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCccHhhHH
Q 035749 60 AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMD-----QGVQPNVVTFS 134 (405)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 134 (405)
..+...++..+...|++++++..+..+.... |.+...|..++.++.+.|+..+|++.|+.+.+ .|+.|+..+-.
T Consensus 171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 171 VLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3456677888888999999998888887764 77888999999999999999999999988754 48888877655
Q ss_pred HHHHHH
Q 035749 135 VIMDEL 140 (405)
Q Consensus 135 ~l~~~~ 140 (405)
..-..+
T Consensus 250 l~~~il 255 (388)
T 2ff4_A 250 LNERIL 255 (388)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 443433
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.65 E-value=1.9 Score=37.11 Aligned_cols=50 Identities=20% Similarity=0.322 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHHC-----CCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 035749 109 NDSNEAKRLFIEMMDQ-----GVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQ 158 (405)
Q Consensus 109 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 158 (405)
|+++.|++.+..+.+. +...+......++..|...|+++...+.+..+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6677777766555432 2333455566777777788888777776665544
No 245
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.52 E-value=2.6 Score=38.02 Aligned_cols=116 Identities=9% Similarity=-0.026 Sum_probs=67.1
Q ss_pred ccHHHHHHHHHHHHHcCCCccHHH----HHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHH
Q 035749 249 HQVERAFKLFDEMQRHGVAADTWA----YRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIA 324 (405)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 324 (405)
.+.+.|...+....... ..+... ...+.......+...++...+...... ..+.......+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHH
Confidence 46788888887775432 222222 222222333444345555566554433 23333444444555567888888
Q ss_pred HHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 035749 325 WELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEA 368 (405)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 368 (405)
...|+.+..... ......-.+.+++...|+.++|..+|+.+..
T Consensus 305 ~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888888876422 2334344566677788888888888877654
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.40 E-value=0.29 Score=34.98 Aligned_cols=133 Identities=9% Similarity=0.015 Sum_probs=69.6
Q ss_pred CCCCChh--HHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccc--cHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 035749 14 GCEPNVI--TYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKP--DAVIYTTIIDGLCKEGFVDKAKELLLQMKDK 89 (405)
Q Consensus 14 ~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (405)
|..|... ++..-++.+...|.++.|+-+.+.+...........+| ...++..+..++...+++.+|...|++..+.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4444443 45556888999999999999888866542100000112 1346788889999999999999999996432
Q ss_pred C--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 90 N--INPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 90 ~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
. ++-+..+...+.. ...... ......+...-..+..+|.+.+++++|+.+++.+...
T Consensus 93 ~k~l~k~~s~~~~~~~----~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 93 KKALSKTSKVRPSTGN----SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHhcCCCccccccc----cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 1 1111111111100 000000 0011223444445677777788888888777765433
No 247
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.29 E-value=0.86 Score=31.58 Aligned_cols=71 Identities=11% Similarity=0.036 Sum_probs=44.0
Q ss_pred CccHHHHHHHHHHHHhcCCHH---HHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 035749 302 ELDIRSYSCLIDGLCKSGRLK---IAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPD 374 (405)
Q Consensus 302 ~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 374 (405)
.|+..+-..+++++.++.+.+ +++.+++.+.+.+..-.....-.+..++.+.|++++|.++.+.+++. .|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 466666666777777666533 45666666654322223444555666777777777777777777774 554
No 248
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.23 E-value=0.68 Score=31.64 Aligned_cols=68 Identities=7% Similarity=0.112 Sum_probs=42.1
Q ss_pred CCChHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 92 NPDVVTYNSVIRGFCYANDS---NEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
.|++.+--.+..++++..+. .+++.+++.+.+.+..-....+..+.-++.+.|++++|.+..+.+++.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 45666666666666666543 456666766666543223445555666677777777777777777665
No 249
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.18 E-value=0.49 Score=40.00 Aligned_cols=78 Identities=4% Similarity=-0.022 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 035749 97 TYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQ-----IGVRPNAFVYNTL 171 (405)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 171 (405)
+...++..+...|+..++...+..+.... +.+...+..++.++...|+..+|++.|+.+.+ .|+.|...+-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 45567788889999999999999988763 44888999999999999999999999988754 4899988765544
Q ss_pred HHHH
Q 035749 172 MDGF 175 (405)
Q Consensus 172 ~~~~ 175 (405)
-...
T Consensus 252 ~~il 255 (388)
T 2ff4_A 252 ERIL 255 (388)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3433
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.86 E-value=2.9 Score=41.19 Aligned_cols=131 Identities=11% Similarity=0.150 Sum_probs=78.8
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 035749 131 VTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNA----FVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSIL 206 (405)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 206 (405)
..|..++..+.+.+.++.+.++-...++...+.+. ..|..+.+.+...|++++|...+-.+.... .-......|
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--LKKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--SCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--HHHHHHHHH
Confidence 45677888888888888888888777765322222 257778888889999999988888776653 334555666
Q ss_pred HHHHhhcCC------------hHHHHHHHHHHHh-C-CCCCchhhHHHHHHHHHccccHHHHH-HHHHHHHH
Q 035749 207 INGYCKNKE------------IEGALSLYSEMLS-K-GIKPTVVTYNTLFIGLFEIHQVERAF-KLFDEMQR 263 (405)
Q Consensus 207 ~~~~~~~~~------------~~~a~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~ 263 (405)
+..++..+. .++..+++..-.+ . .+...+.-|..|-.-+...|++-.|- -+|+.+.+
T Consensus 978 V~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 978 VNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 665555444 3445555543222 1 11111223455555555667765544 44555443
No 251
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.46 E-value=0.46 Score=30.44 Aligned_cols=59 Identities=15% Similarity=0.213 Sum_probs=47.6
Q ss_pred HhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHH
Q 035749 3 AAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIID 68 (405)
Q Consensus 3 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 68 (405)
..+-++.+...+.-|++....+.+++|.+-+++.-|+++|+.+...- .+...+|..+++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-------~~~~~iY~~~lq 87 (109)
T 1v54_E 29 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-------GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------TTCTTHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-------cCchhhHHHHHH
Confidence 45566777777889999999999999999999999999999988664 333456766664
No 252
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.08 E-value=1.5 Score=30.41 Aligned_cols=68 Identities=7% Similarity=0.112 Sum_probs=42.9
Q ss_pred CCChHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 92 NPDVVTYNSVIRGFCYANDS---NEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
.|+..+--.+..++++..+. .+++.+++.+.+.+..-.......+.-++.+.|++++|.+..+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 45666666666666666543 456667777666543334444555666677777777777777777765
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.82 E-value=2.6 Score=41.52 Aligned_cols=133 Identities=10% Similarity=0.039 Sum_probs=82.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHH
Q 035749 164 NAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNV----FSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYN 239 (405)
Q Consensus 164 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (405)
-..-|..++..+.+.+.++.+.++-+...+...+.+. ..|..+.+.+...+++++|...+-.+..... -...+.
T Consensus 898 l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr 975 (1139)
T 4fhn_B 898 LSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLL 975 (1139)
T ss_dssp SHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHH
Confidence 3456788889999999999999988887765322222 2578889999999999999999988776533 345566
Q ss_pred HHHHHHHccccH------------HHHHHHHHHHHH-c-CCCccHHHHHHHHHHHhcCCChHHH-HHHHHHHHh
Q 035749 240 TLFIGLFEIHQV------------ERAFKLFDEMQR-H-GVAADTWAYRTFIDGLCKNGYIVEA-LELFRTLRI 298 (405)
Q Consensus 240 ~l~~~~~~~~~~------------~~a~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 298 (405)
.++...+..+.. +++.+++..-.+ . .....+.-|..+-.-+...|++.+| .-+|+.+.+
T Consensus 976 ~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 976 DFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 676666655543 444444433221 1 1111123344444444555655544 444555543
No 254
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.49 E-value=2.1 Score=30.61 Aligned_cols=30 Identities=17% Similarity=0.126 Sum_probs=19.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 035749 304 DIRSYSCLIDGLCKSGRLKIAWELFHSLPR 333 (405)
Q Consensus 304 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 333 (405)
+...-..+..+|.+.+++++|+.+++.+..
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 444555566667777777777777666644
No 255
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=92.48 E-value=2.9 Score=32.73 Aligned_cols=116 Identities=16% Similarity=0.160 Sum_probs=71.8
Q ss_pred HHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccH----HHHHHHHHHHHhcC
Q 035749 244 GLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDI----RSYSCLIDGLCKSG 319 (405)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 319 (405)
...+.|+.+.++.....-++.. |.|...-..+++.+|-.|++++|..-++.+.+.. |+. ..|..+|++-
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~--p~~~~~a~~yr~lI~aE---- 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKAA---- 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHHHHHH----
Confidence 4567788888888888877775 7788888888888899999999988888887663 332 2344444331
Q ss_pred CHHHHH-HHHhhccCCC-cCccHHHHHHHHHHHH--cCCCHHHHHHHHHHHHhC
Q 035749 320 RLKIAW-ELFHSLPRGV-LIADVVTYNIMIHALC--ADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 320 ~~~~a~-~~~~~~~~~~-~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 369 (405)
..+ ++|.--..-+ +.....-...++.+.. ..|+.++|..+-.++.+.
T Consensus 79 ---~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 79 ---QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ---HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 111 2222111100 1112223344444443 568899988888887654
No 256
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.01 E-value=1.6 Score=28.08 Aligned_cols=46 Identities=9% Similarity=-0.016 Sum_probs=22.0
Q ss_pred HHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 035749 323 IAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEA 368 (405)
Q Consensus 323 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 368 (405)
+..+-++.+....+.|++....+.+++|.+.+++..|+++++-.+.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3334444444444444555555555555555555555555544443
No 257
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.01 E-value=5.3 Score=32.27 Aligned_cols=112 Identities=13% Similarity=0.070 Sum_probs=57.7
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHH----HHHHHHHcCCCccHHHHHHHHH
Q 035749 203 YSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFK----LFDEMQRHGVAADTWAYRTFID 278 (405)
Q Consensus 203 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~l~~ 278 (405)
|.++..-|.+.+++++|++++..-.. .+.+.|+...|.+ +++...+.+.+++......++.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 33444455666667766666544321 1223344333333 2333344555666666666665
Q ss_pred HHhcCCChH-HHHHHHHHHH----hcC--CCccHHHHHHHHHHHHhcCCHHHHHHHHh
Q 035749 279 GLCKNGYIV-EALELFRTLR----ILK--CELDIRSYSCLIDGLCKSGRLKIAWELFH 329 (405)
Q Consensus 279 ~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 329 (405)
.+......+ .-.++++.+. +.+ ..-++.....++..|.+.|++.+|...|-
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 554422111 1122222222 111 12366777888888888888888888765
No 258
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=90.78 E-value=2.2 Score=27.33 Aligned_cols=88 Identities=11% Similarity=0.066 Sum_probs=54.5
Q ss_pred cCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCH
Q 035749 32 TGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDS 111 (405)
Q Consensus 32 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 111 (405)
....++|..+-+.+...+ ....+-..-+..+...|++++|..+.+... -||...|..|.. .+.|--
T Consensus 20 ~H~HqEA~tIAdwL~~~~--------~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~ 85 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKG--------EEEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLG 85 (116)
T ss_dssp TTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCH
T ss_pred chHHHHHHHHHHHHHhCC--------cHHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccH
Confidence 345677777777776543 122222223445678889998888776543 567777766644 467777
Q ss_pred HHHHHHHHHHHHCCCCccHhhHH
Q 035749 112 NEAKRLFIEMMDQGVQPNVVTFS 134 (405)
Q Consensus 112 ~~a~~~~~~~~~~~~~~~~~~~~ 134 (405)
.++...+..+-..| .|....|.
T Consensus 86 s~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 86 SALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHHHHHHTTCC-CHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CHHHHHHH
Confidence 78887777776664 33444443
No 259
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=90.53 E-value=2.8 Score=28.66 Aligned_cols=42 Identities=7% Similarity=-0.018 Sum_probs=18.4
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 035749 290 LELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSL 331 (405)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 331 (405)
.+-++.+...+..|++.+....+++|.+.+++.-|.++|+-+
T Consensus 73 rrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~v 114 (152)
T 2y69_E 73 RKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVV 114 (152)
T ss_dssp HHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333333333344444444444444444444444444444443
No 260
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=89.93 E-value=3.4 Score=28.25 Aligned_cols=63 Identities=10% Similarity=0.022 Sum_probs=50.3
Q ss_pred CHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 035749 320 RLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLML 383 (405)
Q Consensus 320 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 383 (405)
|.=+..+-++.+....+.|++......+++|.+.+++..|+++|+-.+.+ ..+...+|..++.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 34456677777777788999999999999999999999999999998876 3444556776654
No 261
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.48 E-value=2 Score=27.43 Aligned_cols=88 Identities=14% Similarity=0.086 Sum_probs=54.2
Q ss_pred cCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCH
Q 035749 32 TGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDS 111 (405)
Q Consensus 32 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 111 (405)
....++|..+-+.+...+ ....+-..-+..+...|++++|..+.+... .||...|..|.. .+.|--
T Consensus 19 ~H~HqEA~tIAdwL~~~~--------~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~ 84 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLG--------QDEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLG 84 (115)
T ss_dssp TTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCH
T ss_pred chHHHHHHHHHHHHHhCC--------cHHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccH
Confidence 345677777777776543 122222223445678888988887765443 567777766543 467877
Q ss_pred HHHHHHHHHHHHCCCCccHhhHH
Q 035749 112 NEAKRLFIEMMDQGVQPNVVTFS 134 (405)
Q Consensus 112 ~~a~~~~~~~~~~~~~~~~~~~~ 134 (405)
+++...+..+-..| .|....|.
T Consensus 85 s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 85 AALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CHHHHHHH
Confidence 88888887777665 33444443
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.46 E-value=7.1 Score=33.46 Aligned_cols=99 Identities=9% Similarity=-0.020 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc---CCCCCHHH--H
Q 035749 96 VTYNSVIRGFCYANDSNEAKRLFIEMMDQ--GVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI---GVRPNAFV--Y 168 (405)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~ 168 (405)
.+...+...|.+.|++++|.+.|.++... +...-...+...++.+...+++..+...+.++... +..++... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 45667778888888888888888887753 23334566677777888888888888888776543 22222211 1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhc
Q 035749 169 NTLMDGFCLTGRVNRAKELFVSMESM 194 (405)
Q Consensus 169 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (405)
..-+..+...+++..|-+.|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11223345667788877777666443
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.43 E-value=3.4 Score=35.39 Aligned_cols=99 Identities=14% Similarity=0.017 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCccHhhH--
Q 035749 61 VIYTTIIDGLCKEGFVDKAKELLLQMKDKN--INPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQ---GVQPNVVTF-- 133 (405)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~-- 133 (405)
.+...+...+.+.|+++.|.+.|.++.... ...-...+-.+++.+...+++..+...+.++... +..|+....
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 456677777888888888888888776542 2233566777777788888888888777776432 222222211
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 134 SVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 134 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
......+...+++..|.+.|-.....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11122334567788877777666544
No 264
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=87.84 E-value=5.4 Score=29.62 Aligned_cols=86 Identities=16% Similarity=0.098 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHcCCCCCcccccccHHH---HHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-ChHHHHHHHHHHHhcCCH
Q 035749 36 IVALNLFEEMINGNGEFGVVCKPDAVI---YTTIIDGLCKEGFVDKAKELLLQMKDKNINP-DVVTYNSVIRGFCYANDS 111 (405)
Q Consensus 36 ~~A~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 111 (405)
++++..|..... ...|+.. |...+..+ ..+...++.++|..|...|+-. -...|......+-..|++
T Consensus 61 Erc~~~F~~~~r--------YkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~ 131 (202)
T 3esl_A 61 ERCLIYIQDMET--------YRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFF 131 (202)
T ss_dssp HHHHHHHTTCGG--------GTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccccc--------ccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCH
Confidence 455566655433 3455543 33344333 1455778889999888776533 466778888888889999
Q ss_pred HHHHHHHHHHHHCCCCccH
Q 035749 112 NEAKRLFIEMMDQGVQPNV 130 (405)
Q Consensus 112 ~~a~~~~~~~~~~~~~~~~ 130 (405)
.+|..+|+.-++.+-.|-.
T Consensus 132 ~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 132 LEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp HHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHHHcCCccHH
Confidence 9999999998888777653
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.37 E-value=4 Score=31.96 Aligned_cols=56 Identities=29% Similarity=0.395 Sum_probs=42.0
Q ss_pred HHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 035749 27 NGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK 89 (405)
Q Consensus 27 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (405)
..+.+.|++++|++....-++.. |.|...-..+++.++-.|++++|.+=++...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-------P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-------PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34567788888888887777764 567777778888888888888888777777665
No 266
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.27 E-value=10 Score=30.60 Aligned_cols=109 Identities=10% Similarity=0.072 Sum_probs=55.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHH----HHHHHHHcCCCCCHHHHHHHHHHHH
Q 035749 101 VIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQ----LLELMIQIGVRPNAFVYNTLMDGFC 176 (405)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (405)
+..-|.+.+++++|++++..- ...+.+.|+...|-+ +++-..+.+.+++......++..+.
T Consensus 39 l~~Ry~~~~~~~eAidlL~~g---------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 39 IANRYVRSKSYEHAIELISQG---------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 333455666666666654432 112233344433333 3344444556666666666665554
Q ss_pred ccCCHH-HHHHHHHHHHh----cC--CCCChhhHHHHHHHHhhcCChHHHHHHHH
Q 035749 177 LTGRVN-RAKELFVSMES----MG--CKHNVFSYSILINGYCKNKEIEGALSLYS 224 (405)
Q Consensus 177 ~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 224 (405)
.....+ .=.++++.+.. .| ..-++..+..+...|.+.+++.+|...|-
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 432111 11223333322 11 12366778888888888888888877664
No 267
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=86.86 E-value=7.9 Score=28.77 Aligned_cols=88 Identities=19% Similarity=0.176 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCc-cHhhHHHHHHHHHcCCCHHHHHHHH
Q 035749 77 DKAKELLLQMKDKNINPDVVTYNSVIRGFCY--ANDSNEAKRLFIEMMDQGVQP-NVVTFSVIMDELCKNGKMEEASQLL 153 (405)
Q Consensus 77 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 153 (405)
+++...|..... ..-|+......+...-. .++..++.++|..|...|+-. -...|...+..+-..|++.+|..+|
T Consensus 61 Erc~~~F~~~~r--YkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy 138 (202)
T 3esl_A 61 ERCLIYIQDMET--YRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLL 138 (202)
T ss_dssp HHHHHHHTTCGG--GTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhccccc--ccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344455544333 24466555554443322 455789999999998876543 3566778888899999999999999
Q ss_pred HHHHHcCCCCCHH
Q 035749 154 ELMIQIGVRPNAF 166 (405)
Q Consensus 154 ~~~~~~~~~~~~~ 166 (405)
+.-++.+-.|-..
T Consensus 139 ~~GI~~~A~P~~r 151 (202)
T 3esl_A 139 ELGAENNCRPYNR 151 (202)
T ss_dssp HHHHHTTCBSHHH
T ss_pred HHHHHcCCccHHH
Confidence 9999988777543
No 268
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.32 E-value=14 Score=30.18 Aligned_cols=113 Identities=11% Similarity=0.080 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHH----HHHHHHCCCCccHhhHHHH
Q 035749 61 VIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRL----FIEMMDQGVQPNVVTFSVI 136 (405)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l 136 (405)
..|..+..-|.+++++++|++++-.-.. .+.+.|+...|-++ .+-+.+.+++++......+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL 100 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKL 100 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3455555556777778777776544321 13333444333332 2333444566666666666
Q ss_pred HHHHHcCCCHH-HHHHHHHHH----HHcC--CCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 035749 137 MDELCKNGKME-EASQLLELM----IQIG--VRPNAFVYNTLMDGFCLTGRVNRAKELF 188 (405)
Q Consensus 137 ~~~~~~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 188 (405)
+..+.....-+ .-.++++.+ .+.| ..-++.....+...|.+.+++.+|...|
T Consensus 101 ~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 101 LGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 66555443210 111122222 2222 2235666777788888888888887776
No 269
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=82.81 E-value=10 Score=26.70 Aligned_cols=73 Identities=7% Similarity=0.058 Sum_probs=51.7
Q ss_pred ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHh
Q 035749 56 CKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINP-DVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVV 131 (405)
Q Consensus 56 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 131 (405)
...|+.-...-+.. ++. .+++.++|..|...++-. -...|......+-..|++.+|.++|+.-++.+-.|-..
T Consensus 64 YknD~RyLklWl~y-a~~--~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 64 YHNDPRFISYCLKF-AEY--NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp GTTCHHHHHHHHHH-HTT--BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred ccCCHHHHHHHHHH-HHh--cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 34555544433332 222 344889999998887643 46678888888999999999999999999987777543
No 270
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.24 E-value=22 Score=29.99 Aligned_cols=168 Identities=10% Similarity=-0.063 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCCChHHH-
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKE-GFVDKAKELLLQMKDKNINPDVVTY- 98 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~- 98 (405)
+...+...|.+.|+.++..+++.....--+... ..........++..+... +..+.-.++..+..+-. .-...+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~fl 97 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSIS--KAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSC--HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc--hHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 456788888889998888888877654321100 011244566666666653 33333333333332210 0011222
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----ccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC--CCCCHH
Q 035749 99 -----NSVIRGFCYANDSNEAKRLFIEMMDQGVQ-----PNVVTFSVIMDELCKNGKMEEASQLLELMIQIG--VRPNAF 166 (405)
Q Consensus 99 -----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~ 166 (405)
..++..|...|++.+|.+++..+.+.=.. .-...+..-+..|...+++.++...+....... +.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 24677777888888887777777653111 112334445556677777777777776664331 223332
Q ss_pred HHHHH----HHHHH-ccCCHHHHHHHHHHH
Q 035749 167 VYNTL----MDGFC-LTGRVNRAKELFVSM 191 (405)
Q Consensus 167 ~~~~l----~~~~~-~~~~~~~a~~~~~~~ 191 (405)
+...+ ...+. ..+++..|...|-+.
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 22211 22344 567777776666554
No 271
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=81.85 E-value=20 Score=29.31 Aligned_cols=26 Identities=12% Similarity=-0.040 Sum_probs=19.2
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHH
Q 035749 303 LDIRSYSCLIDGLCKSGRLKIAWELF 328 (405)
Q Consensus 303 ~~~~~~~~l~~~~~~~~~~~~a~~~~ 328 (405)
-|+.....++..|.+.+++.+|...|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 35666677777788888888887776
No 272
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=78.99 E-value=15 Score=26.25 Aligned_cols=74 Identities=12% Similarity=0.062 Sum_probs=51.7
Q ss_pred ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhh
Q 035749 56 CKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINP-DVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVT 132 (405)
Q Consensus 56 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 132 (405)
...|+.....-+...-.. +.+.++|..|...++-. -...|......+-..|++.+|.++|..-++.+-.|....
T Consensus 59 YknD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L 133 (164)
T 2wvi_A 59 YYSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERL 133 (164)
T ss_dssp GTTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred hccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 345555444444322222 44778899888887643 466788888888899999999999999999887776443
No 273
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=78.39 E-value=29 Score=29.19 Aligned_cols=167 Identities=11% Similarity=-0.001 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCC---ChHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCccHhhH-
Q 035749 60 AVIYTTIIDGLCKEGFVDKAKELLLQMKDKN-INP---DVVTYNSVIRGFCYA-NDSNEAKRLFIEMMDQGVQPNVVTF- 133 (405)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~- 133 (405)
......|...|.+.|+.++..+++......= ..+ .......++..+... +..+.-.++..+.++.... ...+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 4567788899999999999988888764320 011 233445566666553 3334444444444432111 11122
Q ss_pred -----HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHhc--CCCCChh
Q 035749 134 -----SVIMDELCKNGKMEEASQLLELMIQIGVRPN-----AFVYNTLMDGFCLTGRVNRAKELFVSMESM--GCKHNVF 201 (405)
Q Consensus 134 -----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~ 201 (405)
..++..|...|++.+|.+++..+.+.--..| ..++..-+..|...+++.++...+...... .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 2466777777777777777777665311111 123444456677777777777777666432 1112222
Q ss_pred hHH----HHHHHHh-hcCChHHHHHHHHHHH
Q 035749 202 SYS----ILINGYC-KNKEIEGALSLYSEML 227 (405)
Q Consensus 202 ~~~----~l~~~~~-~~~~~~~a~~~~~~~~ 227 (405)
... .-+..+. ..+++..|...|-+..
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 211 1122344 5677777766665553
No 274
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.93 E-value=35 Score=29.86 Aligned_cols=65 Identities=9% Similarity=0.035 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCccccccc---HHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPD---AVIYTTIIDGLCKEGFVDKAKELLLQMKDK 89 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (405)
..++.+++.|...+.++.|..+..+..--. . ..++ ..-+..++..+.-++++.+|.+.+......
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~--~---~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPH--T---DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCT--T---TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCc--c---cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 346667777777777777777777663110 0 0011 112333455566667777777776666544
No 275
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=77.15 E-value=17 Score=25.67 Aligned_cols=73 Identities=18% Similarity=0.275 Sum_probs=53.0
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHH
Q 035749 92 NPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQP-NVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFV 167 (405)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 167 (405)
..|+.....-+...-.. .++.++|..|...|+-. -...|...+..+-..|++.+|..+|+.-++.+-.|-...
T Consensus 65 knD~RyLklWl~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL 138 (152)
T 4a1g_A 65 HNDPRFISYCLKFAEYN---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFL 138 (152)
T ss_dssp TTCHHHHHHHHHHHTTB---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred cCCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHH
Confidence 44666555555433222 44889999998887653 355677888888999999999999999999887775443
No 276
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=72.60 E-value=24 Score=25.29 Aligned_cols=73 Identities=15% Similarity=0.124 Sum_probs=52.6
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc-HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHH
Q 035749 92 NPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPN-VVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFV 167 (405)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 167 (405)
..|+......+...-.. +.+.++|..|...|+-.. ...|...+..+-..|++.+|..+|+.-++.+-.|....
T Consensus 60 knD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L 133 (164)
T 2wvi_A 60 YSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERL 133 (164)
T ss_dssp TTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred ccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 44665555555433223 447788999988876543 55677788888899999999999999999887776543
No 277
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=72.36 E-value=40 Score=27.88 Aligned_cols=69 Identities=14% Similarity=0.129 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCC--HHHHHHHHHHHHhCCCCCCHHH
Q 035749 308 YSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGK--MDKAHDLFLDMEAKGVAPDCVA 377 (405)
Q Consensus 308 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~ 377 (405)
...++.-|...|+.++|...++++....+. ...+...+..++-+.++ .+...+++..+...|+-+....
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~ 290 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 290 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 456666777778888888888777542221 22333444444444332 3456666766666655544433
No 278
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=71.41 E-value=76 Score=30.63 Aligned_cols=107 Identities=13% Similarity=-0.039 Sum_probs=69.7
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcC-------c----------
Q 035749 276 FIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLI-------A---------- 338 (405)
Q Consensus 276 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~---------- 338 (405)
++..+...|..+-+.++.. -++.++..-..++++|...|++++|...|+++... +. +
T Consensus 816 l~~~L~~~~~~~~a~eL~~-----~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~g-l~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIG-----WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLV-LYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGG-----GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCT-TCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHh-----hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-cccCcccccchhhhhhccCc
Confidence 5556666777765554332 23455555677889999999999999999886521 10 0
Q ss_pred ------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHcc
Q 035749 339 ------DVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCV----AFNTLMLGCIRN 388 (405)
Q Consensus 339 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~ 388 (405)
...-|..++..+-+.+-++-++++-+.+++.--..|.. .|..+.++.+..
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 11256778888888999999998888888752222332 455555555443
No 279
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=71.02 E-value=18 Score=23.24 Aligned_cols=16 Identities=13% Similarity=-0.099 Sum_probs=6.3
Q ss_pred cCCCHHHHHHHHHHHH
Q 035749 142 KNGKMEEASQLLELMI 157 (405)
Q Consensus 142 ~~~~~~~a~~~~~~~~ 157 (405)
+.|..+++...+..+.
T Consensus 80 rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 80 HLGLGAALDRRLAGLG 95 (115)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHH
Confidence 3344444444333333
No 280
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=70.04 E-value=19 Score=23.16 Aligned_cols=10 Identities=20% Similarity=0.099 Sum_probs=3.9
Q ss_pred hcCCHHHHHH
Q 035749 107 YANDSNEAKR 116 (405)
Q Consensus 107 ~~~~~~~a~~ 116 (405)
..|++++|..
T Consensus 52 NrG~Yq~Al~ 61 (116)
T 2p58_C 52 NRGDYASALQ 61 (116)
T ss_dssp HTTCHHHHHH
T ss_pred cchhHHHHHH
Confidence 3334443333
No 281
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=69.13 E-value=22 Score=26.61 Aligned_cols=49 Identities=6% Similarity=0.002 Sum_probs=34.1
Q ss_pred ChHhHHHHHHhhcCCCCChh--HH-----HHHHHHHHhcCchHHHHHHHHHHHcCC
Q 035749 1 MEAAALFTKLKAFGCEPNVI--TY-----STLINGLCRTGHTIVALNLFEEMINGN 49 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~--~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~~ 49 (405)
|.|+.+|+.+.+.-.-++.. .- ...+-.|.+.|.+++|.+++++.....
T Consensus 89 ESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~ 144 (235)
T 3bu8_A 89 ESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKD 144 (235)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 46889999998764212221 11 233456889999999999999997753
No 282
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=69.04 E-value=42 Score=28.85 Aligned_cols=142 Identities=12% Similarity=0.071 Sum_probs=83.0
Q ss_pred cCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCH
Q 035749 32 TGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDS 111 (405)
Q Consensus 32 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 111 (405)
..+.+-|.++-.+. + .|-....|..-...+...|++++|-.+--...+ |+-.++.|.+.+-..=...|..
T Consensus 342 l~n~~lA~~lA~R~---~------LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~ 411 (494)
T 1bpo_A 342 LQNPDLALRMAVRN---N------LAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQT 411 (494)
T ss_dssp TCCHHHHHHHHHHT---T------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSC
T ss_pred cCCHHHHHHHHHhc---C------CccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCC
Confidence 35666666555443 2 445556677778888888999988887766553 3445666666555544445666
Q ss_pred HHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 035749 112 NEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSM 191 (405)
Q Consensus 112 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 191 (405)
.--+.+|..+.+.|- .+..--..+++.-...|+.+-..+++.+ ..+..+...-. ++ +..+..-|..+|.+.
T Consensus 412 splL~YF~~Ll~~g~-Ln~~ESlEl~r~vL~q~r~~llekWl~e---~KL~~SEeLGD-lv----k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 412 SPLLQYFGILLDQGQ-LNKYESLELCRPVLQQGRKQLLEKWLKE---DKLECSEELGD-LV----KSVDPTLALSVYLRA 482 (494)
T ss_dssp CHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHH---TCSCCCHHHHH-HH----HHHCSHHHHHHHHHH
T ss_pred CHHHHHHHHHhccCc-cchHHhhHHhHHHHhccHHHHHHHHHhc---CCccccHHhHh-hh----hhcCHHHHHHHHHHc
Confidence 666777777776653 3544444566666677777666665543 22333332222 22 233556666666655
Q ss_pred H
Q 035749 192 E 192 (405)
Q Consensus 192 ~ 192 (405)
.
T Consensus 483 ~ 483 (494)
T 1bpo_A 483 N 483 (494)
T ss_dssp C
T ss_pred C
Confidence 3
No 283
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=64.87 E-value=32 Score=26.06 Aligned_cols=53 Identities=11% Similarity=0.226 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHCCCCc-cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC
Q 035749 112 NEAKRLFIEMMDQGVQP-NVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPN 164 (405)
Q Consensus 112 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 164 (405)
+.+..+|..|...|+-. -...|...+..+-..|++.+|..+|+.-++.+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 45667777777665443 244566666677777778888777777777765554
No 284
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=58.94 E-value=12 Score=21.24 Aligned_cols=32 Identities=25% Similarity=0.295 Sum_probs=23.2
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHH-Hhc
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGL-CRT 32 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ 32 (405)
+||...|.+|++..--++..+|...++.. ++-
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i~i~D 35 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISELGTRD 35 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCC
Confidence 58889999988764345556788888877 543
No 285
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.70 E-value=95 Score=27.27 Aligned_cols=25 Identities=12% Similarity=0.254 Sum_probs=13.6
Q ss_pred hHHHHHHHHHccccHHHHHHHHHHH
Q 035749 237 TYNTLFIGLFEIHQVERAFKLFDEM 261 (405)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~~ 261 (405)
.++.+++.|...+.++.|..+..+.
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcC
Confidence 3455555555555555555555544
No 286
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=58.04 E-value=1.1e+02 Score=27.74 Aligned_cols=316 Identities=11% Similarity=-0.007 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHH
Q 035749 61 VIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDEL 140 (405)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (405)
..-...+..+.+.+++...+..+.. .+.+...-.....+....|+..+|......+=..|.. ....+..++..+
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~ 146 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVW 146 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHH
Confidence 3445556666677777766664432 2445555556666777778877676666655444322 344555666666
Q ss_pred HcCCCHH--HHHHHHHHHHHcC-----------CCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhh---H
Q 035749 141 CKNGKME--EASQLLELMIQIG-----------VRPNAFV-YNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFS---Y 203 (405)
Q Consensus 141 ~~~~~~~--~a~~~~~~~~~~~-----------~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~ 203 (405)
.+.|... ....=++.+...| ++++... ...++..+.. ...+..... .. .++... +
T Consensus 147 ~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~---~~--~~~~~~~~~~ 218 (618)
T 1qsa_A 147 RASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFAR---TT--GATDFTRQMA 218 (618)
T ss_dssp HHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHH---HS--CCCHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHh---cc--CCChhhHHHH
Confidence 6554322 2222222222222 1111110 0111111111 111111000 00 111111 1
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhH----HHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 035749 204 SILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTY----NTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDG 279 (405)
Q Consensus 204 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 279 (405)
...+.-+.+ .+.+.|...+....... ..+.... ..+.......+...++...+...... ..+.......+..
T Consensus 219 ~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~ 294 (618)
T 1qsa_A 219 AVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRM 294 (618)
T ss_dssp HHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHH
T ss_pred HHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHH
Confidence 111222222 36677777776665432 1122211 12222223334234444455544332 2333334444444
Q ss_pred HhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCC------------Cc----C---cc-
Q 035749 280 LCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRG------------VL----I---AD- 339 (405)
Q Consensus 280 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------~~----~---~~- 339 (405)
..+.|+++.|...|+.+.... ........-+.+++...|+.++|..+|+.+.+. |. . ++
T Consensus 295 Alr~~d~~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~ 373 (618)
T 1qsa_A 295 ALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQ 373 (618)
T ss_dssp HHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCS
T ss_pred HHHCCCHHHHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCCh
Confidence 455677777777777665422 123444556666777777777777776654321 10 0 00
Q ss_pred ----H-H--HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHH
Q 035749 340 ----V-V--TYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELL 398 (405)
Q Consensus 340 ----~-~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 398 (405)
. . .-...+..+...|....|...+..+... . +......+.......|.+..++...
T Consensus 374 ~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 374 NVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp CCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCChHHHHHHH
Confidence 0 0 0112344566788888888888877754 2 3333334445555666666665444
No 287
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=57.55 E-value=60 Score=24.62 Aligned_cols=48 Identities=19% Similarity=0.138 Sum_probs=40.8
Q ss_pred hHhHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCC
Q 035749 2 EAAALFTKLKAFGCEP-NVITYSTLINGLCRTGHTIVALNLFEEMINGN 49 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 49 (405)
++.++|..|...|+-- -+..|......+-..|++.+|..+|+..+++.
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 5778999999987643 34568888999999999999999999999887
No 288
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=56.46 E-value=51 Score=23.47 Aligned_cols=53 Identities=15% Similarity=0.036 Sum_probs=27.5
Q ss_pred HhcCCHHHHHHHHhhccCCCcCc--cHHHHHHHHH-H-----HHcCCCHHHHHHHHHHHHh
Q 035749 316 CKSGRLKIAWELFHSLPRGVLIA--DVVTYNIMIH-A-----LCADGKMDKAHDLFLDMEA 368 (405)
Q Consensus 316 ~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~g~~~~A~~~~~~~~~ 368 (405)
...|++-+|-++|+.+=.....+ ....|..||. . ..+.|+...|..++++...
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34466666666666553332233 3445555555 2 1245666666666665543
No 289
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=56.37 E-value=66 Score=24.71 Aligned_cols=89 Identities=16% Similarity=0.119 Sum_probs=45.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC--CCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHH
Q 035749 65 TIIDGLCKEGFVDKAKELLLQMKDK--NINP----DVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMD 138 (405)
Q Consensus 65 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (405)
.-+..+....++++|.+++++..+. +.++ ........+..-.....-.-+..+.+.+. . .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h--cCCHHHHHHHHH
Confidence 4466788889999999998876543 1121 11111222222222222223333333332 2 234444555566
Q ss_pred HHHcCCCHHHHHHHHHHH
Q 035749 139 ELCKNGKMEEASQLLELM 156 (405)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~ 156 (405)
.+.+.|+.++|.++|-+.
T Consensus 100 ~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHH
Confidence 666777777777666544
No 290
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=56.08 E-value=59 Score=24.10 Aligned_cols=54 Identities=15% Similarity=0.295 Sum_probs=26.9
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC-----HHHHHHHHHHHHhcCC
Q 035749 142 KNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGR-----VNRAKELFVSMESMGC 196 (405)
Q Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 196 (405)
+..+.+.|+-++-+|++.| .|....-..++-+....|. ...|...++.....|.
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3456666666666666666 4443333334444444443 2233444444455553
No 291
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=55.45 E-value=63 Score=25.05 Aligned_cols=15 Identities=13% Similarity=0.213 Sum_probs=8.5
Q ss_pred HHhcCCHHHHHHHHh
Q 035749 315 LCKSGRLKIAWELFH 329 (405)
Q Consensus 315 ~~~~~~~~~a~~~~~ 329 (405)
.+..|+.+-+..+++
T Consensus 226 A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 226 AVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHh
Confidence 345566666555555
No 292
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=55.27 E-value=54 Score=23.36 Aligned_cols=60 Identities=10% Similarity=0.058 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccc--cHHHHHHHHH-H-----HHhcCChHHHHHHHHHHHh
Q 035749 22 YSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKP--DAVIYTTIID-G-----LCKEGFVDKAKELLLQMKD 88 (405)
Q Consensus 22 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 88 (405)
|...+. +...|++-+|-++++..-... ..+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 36 ~~~~i~-lFn~g~yfeaHEvLEe~W~~~------~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVR-LYNSGEFHESHDCFEDEWYNY------GRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHH-HHHTTCHHHHHHHHHHHTTTT------CSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHH-HHhCCCchHHHHHHHHHHHhc------CCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 444444 445699999999999998775 344 5667777777 2 3357999999999988765
No 293
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=54.38 E-value=51 Score=22.86 Aligned_cols=64 Identities=11% Similarity=0.099 Sum_probs=45.1
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChH
Q 035749 7 FTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVD 77 (405)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 77 (405)
-+.+.+.|.+++..- ..++..+...+..-.|.++++.+.+.+ ...+..|....+..+.+.|-..
T Consensus 10 ~~~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~------~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 10 LETLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKF------PNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGC------TTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhC------CCCChhhHHHHHHHHHHCCCEE
Confidence 345667788777753 456666767777888999999998876 3456667667777777766543
No 294
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=54.24 E-value=44 Score=23.23 Aligned_cols=64 Identities=9% Similarity=0.066 Sum_probs=44.9
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChH
Q 035749 6 LFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVD 77 (405)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 77 (405)
+-+.+.+.|.+++..- ..++..+...+ .-.|.++++.+.+.+ ...+..|...-+..+.+.|-..
T Consensus 6 ~~~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~------~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 6 WKSDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTA------SGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp HHHHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTC------TTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhC------CCCCHhHHHHHHHHHHHCCcEE
Confidence 3455677888887753 44566666666 778999999998876 4556777777777777776543
No 295
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=53.88 E-value=65 Score=23.85 Aligned_cols=21 Identities=14% Similarity=0.184 Sum_probs=11.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCC
Q 035749 143 NGKMEEASQLLELMIQIGVRP 163 (405)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~~~~ 163 (405)
..+.+.|+-++-+|++.|-.|
T Consensus 20 GSDpDAAly~LaRMl~~GEDp 40 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDP 40 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCH
T ss_pred CCCHHHHHHHHHHHHHcCCCH
Confidence 345556666666665555333
No 296
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=52.09 E-value=59 Score=22.88 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHH
Q 035749 272 AYRTFIDGLCKNGYIVEALELFRTLR 297 (405)
Q Consensus 272 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 297 (405)
....++.-|...|+.++|...++++.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 34556666777777777777777764
No 297
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=51.71 E-value=79 Score=24.26 Aligned_cols=29 Identities=21% Similarity=0.237 Sum_probs=19.2
Q ss_pred ccHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 035749 268 ADTWAYRTFIDGLCKNGYIVEALELFRTL 296 (405)
Q Consensus 268 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 296 (405)
++.......+..+.+.|+.++|.++|-+.
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 44555666667777777777777776544
No 298
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=51.39 E-value=53 Score=22.46 Aligned_cols=63 Identities=10% Similarity=0.189 Sum_probs=43.7
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHhcC-chHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChH
Q 035749 8 TKLKAFGCEPNVITYSTLINGLCRTG-HTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVD 77 (405)
Q Consensus 8 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 77 (405)
+.+.+.|.+++..- ..++..+...+ ..-.|.++++.+.+.+ ...+..|...-+..+.+.|-..
T Consensus 7 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~------~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 7 SELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAG------EDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTT------CCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhC------CCCCHHHHHHHHHHHHHCCcEE
Confidence 34667788777754 44666676666 7788999999998876 3556667666777777766543
No 299
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=50.66 E-value=37 Score=25.08 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=9.4
Q ss_pred HHHhcCCHHHHHHHHhhc
Q 035749 314 GLCKSGRLKIAWELFHSL 331 (405)
Q Consensus 314 ~~~~~~~~~~a~~~~~~~ 331 (405)
.|.+.|.+++|.++|++.
T Consensus 126 VCiekg~Fk~A~eiLkr~ 143 (211)
T 3bqo_A 126 VCMENGNFKEAEEVFERI 143 (211)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHH
Confidence 355555555555555553
No 300
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=49.34 E-value=80 Score=23.63 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=12.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCCC
Q 035749 143 NGKMEEASQLLELMIQIGVRPN 164 (405)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~ 164 (405)
..+.+.|+-++-+|++.|-.|.
T Consensus 48 GSDpDAALywLaRMl~~GEDp~ 69 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPN 69 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHH
T ss_pred cCCHHHHHHHHHHHHHcCCCHH
Confidence 3456666666666666554333
No 301
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=49.05 E-value=46 Score=23.31 Aligned_cols=64 Identities=16% Similarity=0.199 Sum_probs=45.6
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHhcC-chHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChH
Q 035749 7 FTKLKAFGCEPNVITYSTLINGLCRTG-HTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVD 77 (405)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 77 (405)
.+.+.+.|.+++..- ..++..+...+ .+-.|.++++.+.+.+ ...+..|...-+..+...|-..
T Consensus 5 ~~~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~------~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 5 NQALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLG------EEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTT------CCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhC------CCCCHHHHHHHHHHHHHCCcEE
Confidence 345677888877754 44666666666 6778999999998876 3556677777777777777544
No 302
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=48.10 E-value=49 Score=23.16 Aligned_cols=64 Identities=16% Similarity=0.196 Sum_probs=42.5
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChH
Q 035749 7 FTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVD 77 (405)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 77 (405)
-+.+.+.|.+++..- ..++..+...+.+-.|.++++.+.+.+ ...+..|....+..+...|-..
T Consensus 15 ~~~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~------~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 15 RMSIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKD------KNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHS------TTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhC------CCCCHhhHHHHHHHHHHCCcEE
Confidence 344666787766643 456667777777888999999998776 3456666666777777766543
No 303
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=47.80 E-value=1.3e+02 Score=29.14 Aligned_cols=48 Identities=10% Similarity=0.007 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHhhc
Q 035749 166 FVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNV----FSYSILINGYCKN 213 (405)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~ 213 (405)
..|..++..+.+.+-++.+.++-+.+.+.-.+.|. ..|..+.++.+..
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 46778888888888888888888887764322222 2455666665543
No 304
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=47.52 E-value=1.2e+02 Score=25.12 Aligned_cols=62 Identities=15% Similarity=0.157 Sum_probs=28.9
Q ss_pred HHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCC--hHHHHHHHHHHHhcCC
Q 035749 239 NTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGY--IVEALELFRTLRILKC 301 (405)
Q Consensus 239 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~ 301 (405)
..++.-|...++.++|...++++.... .-...+...+..++-+.++ .+....++..+...++
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~-fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gl 284 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 284 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTT-CHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCc-chHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCC
Confidence 445555666666666666666664211 0112223333333333322 2345555555555443
No 305
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=46.64 E-value=84 Score=24.29 Aligned_cols=49 Identities=18% Similarity=0.114 Sum_probs=23.4
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHccCCHHHHHHHH
Q 035749 136 IMDELCKNGKMEEASQLLELMIQIGVRPNAF---VYNTLMDGFCLTGRVNRAKELF 188 (405)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~ 188 (405)
.+...++.|+.+....++ +.|..++.. .-...+...+..|+.+-+..++
T Consensus 8 ~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 59 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59 (285)
T ss_dssp HHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 444556778876555544 444333211 1112344445667665444333
No 306
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=46.57 E-value=41 Score=19.51 Aligned_cols=46 Identities=11% Similarity=0.063 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhc
Q 035749 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYA 108 (405)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 108 (405)
.++.++..+++..-.++++-.+.+..+.| ..+...|..-.+.+++.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 45566666666666777777777777766 45666666555555443
No 307
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=45.10 E-value=1.5e+02 Score=25.50 Aligned_cols=54 Identities=9% Similarity=0.024 Sum_probs=29.7
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCC-----hHHHHHHHHHHHhCC
Q 035749 177 LTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKE-----IEGALSLYSEMLSKG 230 (405)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~ 230 (405)
+.++.+.|+.++.+|.+.|..|....-..+..+.-.-|. ...|...++....-|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g 325 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVG 325 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSC
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhC
Confidence 446777777777777777655544444444444444442 223444555555555
No 308
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=43.75 E-value=67 Score=22.86 Aligned_cols=68 Identities=9% Similarity=0.153 Sum_probs=44.0
Q ss_pred HHHHHHHHH-HHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHHhcCC
Q 035749 252 ERAFKLFDE-MQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRIL--KCELDIRSYSCLIDGLCKSGR 320 (405)
Q Consensus 252 ~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 320 (405)
+.+.+-+.+ +.+.|...+. --..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 334444433 3455666544 3445666666777778888888888776 556677777777777777764
No 309
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=43.12 E-value=70 Score=22.20 Aligned_cols=56 Identities=9% Similarity=0.060 Sum_probs=24.9
Q ss_pred HHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcC
Q 035749 86 MKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKN 143 (405)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (405)
+.+.|++++..- ..++..+...+ .-.|.++++.+.+.++..+..|...-+..+...
T Consensus 10 L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 65 (145)
T 3eyy_A 10 LRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEEL 65 (145)
T ss_dssp HHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHH
T ss_pred HHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHC
Confidence 344454444332 22333333333 445666666665554444444444444444433
No 310
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=42.98 E-value=70 Score=22.76 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=12.1
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhC
Q 035749 206 LINGYCKNKEIEGALSLYSEMLSK 229 (405)
Q Consensus 206 l~~~~~~~~~~~~a~~~~~~~~~~ 229 (405)
++..+...+.+-.|.++++.+.+.
T Consensus 38 IL~~L~~~~~h~sA~eI~~~l~~~ 61 (162)
T 4ets_A 38 LLKTLYHSDTHYTPESLYMEIKQA 61 (162)
T ss_dssp HHHHHHSCCSCBCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhh
Confidence 344444444555555555555544
No 311
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=42.50 E-value=82 Score=21.79 Aligned_cols=58 Identities=9% Similarity=0.119 Sum_probs=28.2
Q ss_pred HHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCC
Q 035749 86 MKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNG 144 (405)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 144 (405)
+.+.|++++..- ..++..+...+..-.|.++++.+.+.++..+..|....+..+...|
T Consensus 13 l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 444555544332 2333344444445556666666665554444444444444444443
No 312
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=42.09 E-value=1e+02 Score=22.85 Aligned_cols=56 Identities=9% Similarity=0.139 Sum_probs=34.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCC-----HHHHHHHHHHHHHcCCCC
Q 035749 107 YANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGK-----MEEASQLLELMIQIGVRP 163 (405)
Q Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~ 163 (405)
+..+.+.|+-++.+|++.| .|....-..++.+.-.-|. ...|...++.....|.+.
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 86 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPE 86 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTT
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 4577888888888888887 6555554555545444443 344555566666667443
No 313
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=41.82 E-value=1.7e+02 Score=25.29 Aligned_cols=111 Identities=10% Similarity=0.058 Sum_probs=58.9
Q ss_pred cccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 035749 248 IHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWEL 327 (405)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 327 (405)
..+.+-|.++. .+.|++--...|..-+..+...|++++|.++-..... |.--+..+.+.+-.+-..-|+..-.+.+
T Consensus 342 l~n~~lA~~lA---~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~Y 417 (494)
T 1bpo_A 342 LQNPDLALRMA---VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQY 417 (494)
T ss_dssp TCCHHHHHHHH---HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred cCCHHHHHHHH---HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHH
Confidence 45666555543 3455666666677777777888888888777655443 2334555554443333334444555555
Q ss_pred HhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHH
Q 035749 328 FHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLF 363 (405)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 363 (405)
|..+.+.+. .+..---.+++.-..+|+.+-..+.+
T Consensus 418 F~~Ll~~g~-Ln~~ESlEl~r~vL~q~r~~llekWl 452 (494)
T 1bpo_A 418 FGILLDQGQ-LNKYESLELCRPVLQQGRKQLLEKWL 452 (494)
T ss_dssp HHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhccCc-cchHHhhHHhHHHHhccHHHHHHHHH
Confidence 555554432 23222223444444555555444443
No 314
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=41.43 E-value=1.2e+02 Score=23.89 Aligned_cols=205 Identities=9% Similarity=-0.019 Sum_probs=97.4
Q ss_pred HHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh---HHHHHH
Q 035749 25 LINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDV---VTYNSV 101 (405)
Q Consensus 25 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l 101 (405)
.+...+..|+.+-...+++.-...+ .. + -...+...+..|+.+-+..++ +.|..++. .-.+.
T Consensus 34 ~L~~A~~~g~~~~v~~Ll~~g~~~~------~~-~---g~t~L~~A~~~g~~~~v~~Ll----~~ga~~~~~d~~g~t~- 98 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLLNAGALKN------LL-E---NEFPLHQAATLEDTKIVKILL----FSGLDDSQFDDKGNTA- 98 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTGGGS------CC-T---TCCHHHHHTTSSSCHHHHHHH----HTTCCTTCCCTTSCCH-
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCC------CC-C---CCCHHHHHHHcCCHHHHHHHH----HCCCCCCCcCCCCCcH-
Confidence 4555667888776665555422211 11 1 122334445667765554444 44443332 22222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCccHhh---HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHc
Q 035749 102 IRGFCYANDSNEAKRLFIEMMDQGVQPNVVT---FSVIMDELCKNGKMEEASQLLELMIQIGVRP-NAFVYNTLMDGFCL 177 (405)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 177 (405)
+...+..|+.+-+.-+++ .|..++... +...+...+..|+.+-+ +.+.+.|..+ +...-.+.+...+.
T Consensus 99 L~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~ 170 (285)
T 3kea_A 99 LYYAVDSGNMQTVKLFVK----KNWRLMFYGKTGWKTSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIK 170 (285)
T ss_dssp HHHHHHTTCHHHHHHHHH----HCGGGGGCSSSGGGSHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHh----cCCCCCccCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHH
Confidence 334456677655444443 344443321 12334445566776544 4444444332 22123344555567
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHH
Q 035749 178 TGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKL 257 (405)
Q Consensus 178 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 257 (405)
.|+.+-+.-+++.-..... .+....+..+...+..|+. ++.+.+.+.|..++.... .-...|+.+-+.-+
T Consensus 171 ~g~~~~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~~-----~a~~~~~~~iv~~L 240 (285)
T 3kea_A 171 NGHVDMMILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSANL-----ENVLLDDAEIAKMI 240 (285)
T ss_dssp TTCHHHHHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTTG-----GGGTTTCHHHHHHH
T ss_pred cChHHHHHHHHHcCCCCCc-ccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCCh-----hhhhcCCHHHHHHH
Confidence 7888777666665433221 1211122223333445554 355556666766665542 12446666666555
Q ss_pred HHHHH
Q 035749 258 FDEMQ 262 (405)
Q Consensus 258 ~~~~~ 262 (405)
++.-.
T Consensus 241 l~~g~ 245 (285)
T 3kea_A 241 IEKHV 245 (285)
T ss_dssp HHHHH
T ss_pred HHcCC
Confidence 55433
No 315
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=40.82 E-value=1.4e+02 Score=24.04 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=18.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 035749 63 YTTIIDGLCKEGFVDKAKELLLQMK 87 (405)
Q Consensus 63 ~~~l~~~~~~~~~~~~a~~~~~~~~ 87 (405)
...++.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4567777778888888888877754
No 316
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=40.62 E-value=91 Score=21.76 Aligned_cols=58 Identities=14% Similarity=0.291 Sum_probs=26.6
Q ss_pred HHhCCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCC
Q 035749 86 MKDKNINPDVVTYNSVIRGFCYAN-DSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNG 144 (405)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 144 (405)
+.+.|++++..- ..++..+...+ ..-.|.++++.+.+.++..+..|....+..+...|
T Consensus 8 l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 8 LKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 344554444332 22333333333 44456666666655544444444444444444443
No 317
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=40.05 E-value=70 Score=20.25 Aligned_cols=52 Identities=13% Similarity=0.061 Sum_probs=34.3
Q ss_pred HHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHH-----hcCChHHHHHHHHHHHh
Q 035749 29 LCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLC-----KEGFVDKAKELLLQMKD 88 (405)
Q Consensus 29 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~ 88 (405)
+...|++-+|-++++..-... ..+....|..+|+... +.|+. |..++.+...
T Consensus 11 lfn~g~~~eaHEvlE~~W~~~------~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 11 LWRAGRYYEVHEVLEPYWLKA------TGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHhCCChHHHHHHHHHHHhhC------CCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 345599999999999987765 2345566777765433 45666 6666666543
No 318
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=40.05 E-value=1.5e+02 Score=23.96 Aligned_cols=65 Identities=17% Similarity=0.189 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCC--HHHHHHHHHHHHhCCCCC
Q 035749 308 YSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGK--MDKAHDLFLDMEAKGVAP 373 (405)
Q Consensus 308 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~ 373 (405)
...++.-|...|+.++|...++++...... ...+...+..++-+.++ .+....++..+.+.|+-+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls 235 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTIT 235 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCC
Confidence 345566666777777777777776532111 12233333333333322 334555666665554443
No 319
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=39.75 E-value=88 Score=21.33 Aligned_cols=56 Identities=9% Similarity=0.215 Sum_probs=24.3
Q ss_pred HHhCCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHc
Q 035749 86 MKDKNINPDVVTYNSVIRGFCYAN-DSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCK 142 (405)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (405)
+.+.|++++..- ..++..+...+ ..-.|.++++.+.+.++..+..|...-+..+..
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 65 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEA 65 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 334444443322 22333333333 444556666666555444444444434444433
No 320
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=39.37 E-value=1.1e+02 Score=22.43 Aligned_cols=108 Identities=15% Similarity=0.002 Sum_probs=52.3
Q ss_pred ccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHH
Q 035749 268 ADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMI 347 (405)
Q Consensus 268 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 347 (405)
++..+-...+.++.+.++.+ +...+..+.. .++..+-...+.++...|+.+ +...+..+.+ .++..+-...+
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~ 164 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAA 164 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 45555555555555555533 3333333332 455555555666666666543 3333333333 23444555555
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 035749 348 HALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIR 387 (405)
Q Consensus 348 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 387 (405)
.++...+. .++...+..+.+. ++..+-...+.++..
T Consensus 165 ~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 165 DALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLET 200 (211)
T ss_dssp HHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC
T ss_pred HHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHh
Confidence 55555554 4455555555542 244443444444443
No 321
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=39.19 E-value=2.3e+02 Score=25.96 Aligned_cols=26 Identities=31% Similarity=0.276 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHc
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMIN 47 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 47 (405)
.|. +|-.|.+.|++++|.++.++...
T Consensus 155 ~Wa-~IyY~LR~G~~~~A~e~~~~~~~ 180 (661)
T 2qx5_A 155 IWA-LIFYLLRAGLIKEALQVLVENKA 180 (661)
T ss_dssp HHH-HHHHHHTTTCHHHHHHHHHHTGG
T ss_pred cHH-HHHHHHhcCCHHHHHHHHHHhhh
Confidence 565 67778899999999999987754
No 322
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=38.17 E-value=1.2e+02 Score=22.46 Aligned_cols=34 Identities=12% Similarity=0.157 Sum_probs=20.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHH
Q 035749 107 YANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDEL 140 (405)
Q Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (405)
+..+.+.|+-++.+|++.|-.|....-..++.+.
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~As 52 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIAS 52 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4467777777777777776655544444444443
No 323
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=37.41 E-value=67 Score=19.32 Aligned_cols=62 Identities=18% Similarity=0.262 Sum_probs=41.7
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHhcC-chHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCCh
Q 035749 8 TKLKAFGCEPNVITYSTLINGLCRTG-HTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFV 76 (405)
Q Consensus 8 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 76 (405)
+.+.+.|...+..- ..++..+...+ ..-.+.++++.+.+.+ ...+..+....+..+.+.|-.
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~------~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMG------EEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTT------CCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhC------CCCCHhhHHHHHHHHHHCCCe
Confidence 45667787777654 45667666654 5667888999887765 345666777777777766643
No 324
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=36.79 E-value=1.7e+02 Score=23.89 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=19.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH
Q 035749 133 FSVIMDELCKNGKMEEASQLLELMI 157 (405)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~ 157 (405)
...++.-|...|+.++|...++.+.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4567778888899998888887763
No 325
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=36.20 E-value=22 Score=26.25 Aligned_cols=47 Identities=13% Similarity=0.110 Sum_probs=29.2
Q ss_pred ChHhHHHHHHhhcCCCCChh-HH-----HHHHHHHHhcCchHHHHHHHHHHHcCC
Q 035749 1 MEAAALFTKLKAFGCEPNVI-TY-----STLINGLCRTGHTIVALNLFEEMINGN 49 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~-~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~~ 49 (405)
|.|+.+|+.+.+.- ++.. .- ...+..|.+.|.+++|.++|++.....
T Consensus 95 ESAl~v~~~I~~e~--~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~ 147 (211)
T 3bqo_A 95 ESALMIWGSIEKEH--DKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDP 147 (211)
T ss_dssp HHHHHHHTTSCSCC--CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCC
Confidence 35777787776653 2211 11 223456889999999999999976544
No 326
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=34.73 E-value=41 Score=25.94 Aligned_cols=54 Identities=11% Similarity=0.003 Sum_probs=27.7
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCChHH-------HHHHHHHHH--hcCCHHHHHHHHHHH
Q 035749 68 DGLCKEGFVDKAKELLLQMKDKNINPDVVT-------YNSVIRGFC--YANDSNEAKRLFIEM 121 (405)
Q Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~~~~~~a~~~~~~~ 121 (405)
...++.|+.+....+++.+.+.+..++... .+.|..+.. +.|+.+-+..+++.-
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 344566777777777776665554444222 233333322 446555555555443
No 327
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=34.58 E-value=90 Score=21.09 Aligned_cols=45 Identities=16% Similarity=0.109 Sum_probs=25.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcC
Q 035749 65 TIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYAN 109 (405)
Q Consensus 65 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 109 (405)
.++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344444455556667777777766654445555545555555544
No 328
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=33.86 E-value=74 Score=21.52 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=18.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCC
Q 035749 104 GFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNG 144 (405)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 144 (405)
.+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 19 ~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 19 LLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33333444455555555555544444444444444444433
No 329
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=33.49 E-value=1.2e+02 Score=21.22 Aligned_cols=64 Identities=16% Similarity=0.258 Sum_probs=31.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCC--hHHHHHHHHHHHhCCCC
Q 035749 168 YNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKE--IEGALSLYSEMLSKGIK 232 (405)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 232 (405)
...++.-|...|+.++|.+.++++.... .....+...+..++-+.++ .+.+..++..+...++-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 3456666777777777777777764211 1112222333333333222 34455666666655433
No 330
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=32.70 E-value=2.5e+02 Score=24.55 Aligned_cols=66 Identities=8% Similarity=-0.048 Sum_probs=30.7
Q ss_pred cCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 035749 32 TGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGF 105 (405)
Q Consensus 32 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 105 (405)
...+..|...|.++.... |.+...|+.|.......|+.-+|.-.|-+..... .|-..+...|...+
T Consensus 165 ~~~~~~A~~~Y~~A~~~~-------P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~-~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 165 RNQTSQAESYYRHAAQLV-------PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKAL 230 (497)
T ss_dssp TTCHHHHHHHHHHHHHHC-------TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-------CCCCchHHHHHHHHhcccccHHHHHHHHHHHhcC-CCChhHHHHHHHHH
Confidence 344445555555555543 3344455555555555555444444444433332 33444444444433
No 331
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=32.65 E-value=96 Score=19.66 Aligned_cols=38 Identities=16% Similarity=0.024 Sum_probs=29.5
Q ss_pred CchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHH
Q 035749 33 GHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAK 80 (405)
Q Consensus 33 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (405)
...++|.++++.+.++| +.+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG----------~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRG----------SQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSC----------TTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcC----------hHHHHHHHHHHHHcCcHHHHH
Confidence 57899999999998766 457888888887767665553
No 332
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=32.29 E-value=64 Score=22.18 Aligned_cols=9 Identities=22% Similarity=0.143 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 035749 114 AKRLFIEMM 122 (405)
Q Consensus 114 a~~~~~~~~ 122 (405)
|.++++.+.
T Consensus 32 a~eI~~~l~ 40 (139)
T 3mwm_A 32 AQELHDMLK 40 (139)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 333
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=31.99 E-value=3.5e+02 Score=25.98 Aligned_cols=50 Identities=10% Similarity=-0.084 Sum_probs=25.9
Q ss_pred hcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 035749 281 CKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPR 333 (405)
Q Consensus 281 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 333 (405)
.+.|..++-..+++...... +..--..++.++....+.....++++....
T Consensus 737 ~~~g~~~~~~~l~~~~~~~~---~~~ek~~ll~aL~~~~d~~~l~~~L~~~l~ 786 (909)
T 4fke_A 737 IAQGGQDQWDFAWGQLQQAQ---LVNEADKLRSALACSNEVWLLNRYLGYTLN 786 (909)
T ss_dssp HHHSCHHHHHHHHHHHHHCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHccC---CHHHHHHHHHHhCCCCCHHHHHHHHHHHhC
Confidence 34455555445555554432 223334455556666666666666665544
No 334
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=31.89 E-value=78 Score=21.74 Aligned_cols=40 Identities=18% Similarity=0.108 Sum_probs=17.9
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHH
Q 035749 206 LINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGL 245 (405)
Q Consensus 206 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (405)
++..+...+.+-.|.++++.+.+.+...+..|....+..+
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L 58 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSL 58 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 3344444444555555555555544333443333333333
No 335
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=31.84 E-value=1.6e+02 Score=22.06 Aligned_cols=65 Identities=15% Similarity=0.248 Sum_probs=38.8
Q ss_pred HHHHHHHHH---hcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCC-----HHHHHHHHHHHHHcCCC
Q 035749 98 YNSVIRGFC---YANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGK-----MEEASQLLELMIQIGVR 162 (405)
Q Consensus 98 ~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 162 (405)
+-.+|+++. +..+.+.|+-++.+|++.|-.|....-..++.+.-.-|. ...|...++.....|.+
T Consensus 35 HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 35 HFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 334444443 457888888888888888766655555555544444332 34555556666666643
No 336
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=31.43 E-value=2.5e+02 Score=24.11 Aligned_cols=53 Identities=11% Similarity=0.026 Sum_probs=27.6
Q ss_pred cccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHhcC
Q 035749 248 IHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGY-----IVEALELFRTLRILK 300 (405)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~ 300 (405)
.++.+.|+..+.+|.+.|..|....-..+..+....|. ...|...++.....|
T Consensus 268 gsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g 325 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVG 325 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhC
Confidence 35666666666666666655544444444444444443 333444455555555
No 337
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=31.12 E-value=1e+02 Score=19.44 Aligned_cols=25 Identities=20% Similarity=0.121 Sum_probs=15.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Q 035749 342 TYNIMIHALCADGKMDKAHDLFLDM 366 (405)
Q Consensus 342 ~~~~l~~~~~~~g~~~~A~~~~~~~ 366 (405)
.+......+.+.|+|++|++..++.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 3445556667777777776555444
No 338
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=30.74 E-value=1.6e+02 Score=21.58 Aligned_cols=169 Identities=13% Similarity=0.020 Sum_probs=75.0
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHH
Q 035749 59 DAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMD 138 (405)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (405)
+...-...+..+.+.+..+ +...+..+.. .++...-...+.++...++. .+...+..+.. .++...-...+.
T Consensus 32 ~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~ 103 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAV 103 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCcc-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHH
Confidence 3444444555555555432 2333333332 23455555555555555543 23333333332 234444444455
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHH
Q 035749 139 ELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEG 218 (405)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (405)
++.+.++.+ +...+..+.+ .++..+-...+.++...++.+ +...+..+.. .++..+-...+.++.+.+. ..
T Consensus 104 aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~ 174 (211)
T 3ltm_A 104 ALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ER 174 (211)
T ss_dssp HHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HH
T ss_pred HHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hh
Confidence 555555432 2233333332 345555555555555555533 3333333332 3445555555555655554 34
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHHHHHc
Q 035749 219 ALSLYSEMLSKGIKPTVVTYNTLFIGLFE 247 (405)
Q Consensus 219 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 247 (405)
+...+..+... ++...-.....++..
T Consensus 175 ~~~~L~~~l~d---~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 175 VRAAMEKLAET---GTGFARKVAVNYLET 200 (211)
T ss_dssp HHHHHHHHHHH---CCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHHHh
Confidence 45555555543 233333444444443
No 339
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=30.52 E-value=1.5e+02 Score=21.29 Aligned_cols=15 Identities=27% Similarity=0.271 Sum_probs=8.7
Q ss_pred HHhcCChHHHHHHHH
Q 035749 70 LCKEGFVDKAKELLL 84 (405)
Q Consensus 70 ~~~~~~~~~a~~~~~ 84 (405)
.+..|+.+....++.
T Consensus 12 A~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 12 AANQRDTKKVKEILQ 26 (201)
T ss_dssp HHHTTCHHHHHHHHT
T ss_pred HHHhccHHHHHHHHH
Confidence 345666666666554
No 340
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=30.32 E-value=47 Score=18.33 Aligned_cols=38 Identities=24% Similarity=0.365 Sum_probs=25.8
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHhcCc--hHHHHHHHHHHH
Q 035749 4 AALFTKLKAFGCEPNVITYSTLINGLCRTGH--TIVALNLFEEMI 46 (405)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~ 46 (405)
.+.++.+++.|++++ ....++...|. ++.|++++.+|-
T Consensus 10 ~qmlq~L~eMGFd~e-----rae~Alk~Tg~~Gle~AmewL~k~~ 49 (54)
T 2cos_A 10 RQMLQELVNAGCDQE-----MAGRALKQTGSRSIEAALEYISKMS 49 (54)
T ss_dssp HHHHHHHHHHHCCHH-----HHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHH-----HHHHHHHHhCcccHHHHHHHHHHhc
Confidence 456777788887654 23344555555 899999998883
No 341
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=29.96 E-value=1.6e+02 Score=21.30 Aligned_cols=19 Identities=5% Similarity=0.050 Sum_probs=7.8
Q ss_pred cCChHHHHHHHHHHHhCCC
Q 035749 73 EGFVDKAKELLLQMKDKNI 91 (405)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~ 91 (405)
.|+.+.-.++.+.+.+.|.
T Consensus 48 ~~~~~~~~~iv~~Ll~~Ga 66 (186)
T 3t8k_A 48 NNNDEARYKISMFLINKGA 66 (186)
T ss_dssp CSCHHHHHHHHHHHHHTTC
T ss_pred cCCcchHHHHHHHHHHCCC
Confidence 3433333344444444443
No 342
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=29.37 E-value=49 Score=18.73 Aligned_cols=25 Identities=8% Similarity=-0.056 Sum_probs=18.8
Q ss_pred hcCchHHHHHHHHHHHcCCCCCcccccccH
Q 035749 31 RTGHTIVALNLFEEMINGNGEFGVVCKPDA 60 (405)
Q Consensus 31 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 60 (405)
..-|++.|+..|.++...+. +||++
T Consensus 32 ~~Wd~~~A~~~F~~l~~~~~-----IP~eA 56 (59)
T 1oai_A 32 NNWDYTRSAQAFTHLKAKGE-----IPEVA 56 (59)
T ss_dssp TTTCHHHHHHHHHHHHHTTC-----SCGGG
T ss_pred cCCCHHHHHHHHHHHHHcCC-----CCHHH
Confidence 35689999999999876653 56653
No 343
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=28.58 E-value=1.2e+02 Score=20.27 Aligned_cols=42 Identities=12% Similarity=0.027 Sum_probs=20.0
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 035749 82 LLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMD 123 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (405)
+|+.+....+.|++..--.-+......+++..|..+...+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444433332222223334456666666666666554
No 344
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=28.24 E-value=64 Score=18.02 Aligned_cols=10 Identities=30% Similarity=0.235 Sum_probs=1.8
Q ss_pred HHhcCchHHH
Q 035749 29 LCRTGHTIVA 38 (405)
Q Consensus 29 ~~~~~~~~~A 38 (405)
+..+|+|++|
T Consensus 50 LmNrG~Yq~A 59 (61)
T 3ph0_C 50 LMNQGDYQRA 59 (61)
T ss_dssp HHHC------
T ss_pred HHccchHhHh
Confidence 4445555444
No 345
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=28.06 E-value=1.9e+02 Score=21.56 Aligned_cols=24 Identities=8% Similarity=0.039 Sum_probs=14.4
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCC
Q 035749 69 GLCKEGFVDKAKELLLQMKDKNIN 92 (405)
Q Consensus 69 ~~~~~~~~~~a~~~~~~~~~~~~~ 92 (405)
..+..|+.+.+..+++.+.+.+..
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~ 38 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRE 38 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC
Confidence 345567777766666665555433
No 346
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=27.83 E-value=1.2e+02 Score=21.79 Aligned_cols=59 Identities=12% Similarity=0.084 Sum_probs=27.8
Q ss_pred HHhcCCHHHHHHHHhhc-cCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 035749 315 LCKSGRLKIAWELFHSL-PRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPD 374 (405)
Q Consensus 315 ~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 374 (405)
.+..|+.+-+..+++.- .... ..+..-.+.+..+.........-.++++.+.+.|..++
T Consensus 113 A~~~~~~~~v~~Ll~~g~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 113 AAEKGHIDNVKLLLEDGREDID-FQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS 172 (201)
T ss_dssp HHHTTCHHHHHHHHHHCCCCTT-CCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHcCCCCcC-CCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC
Confidence 34566766666666543 1111 11222333444443333223334566666677665554
No 347
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=27.29 E-value=4.2e+02 Score=25.44 Aligned_cols=157 Identities=14% Similarity=0.105 Sum_probs=70.6
Q ss_pred HHHHHHhcCC---hHHHHHHHHHHHhCC----CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHH
Q 035749 66 IIDGLCKEGF---VDKAKELLLQMKDKN----INPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMD 138 (405)
Q Consensus 66 l~~~~~~~~~---~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (405)
++...+..|. .+.|.+.|+.....+ ++||. -..+...-++.|..++-..+++...... +..--..++.
T Consensus 692 ~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dl--r~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ll~ 766 (909)
T 4fke_A 692 AISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNL--RSTIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKLRS 766 (909)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTT--HHHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHHHH
Confidence 3334444444 345666666655431 33332 2333333345566555555555555432 2233345666
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHh---cCCCCChhhHHHHHHHHhhcC
Q 035749 139 ELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCL-TGRVNRAKELFVSMES---MGCKHNVFSYSILINGYCKNK 214 (405)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~ 214 (405)
++....+.....++++.......-....... ++.+... ....+.+.+.+..=-+ .........+..++......-
T Consensus 767 aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~~-~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~~ 845 (909)
T 4fke_A 767 ALACSNEVWLLNRYLGYTLNPDLIRKQDATS-TINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRF 845 (909)
T ss_dssp HHTTCCCHHHHHHHHHHTTCTTTSCGGGHHH-HHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTTC
T ss_pred HhCCCCCHHHHHHHHHHHhCCCCCchhhHHH-HHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhc
Confidence 6666667776666666655432111112222 2222222 2223444444433211 111223344556666655544
Q ss_pred ChHHHHHHHHHHHh
Q 035749 215 EIEGALSLYSEMLS 228 (405)
Q Consensus 215 ~~~~a~~~~~~~~~ 228 (405)
.-++-.+-++...+
T Consensus 846 ~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 846 SSEFELQQLEQFKK 859 (909)
T ss_dssp CSHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHh
Confidence 44444444455444
No 348
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=26.69 E-value=1.6e+02 Score=20.44 Aligned_cols=60 Identities=15% Similarity=0.206 Sum_probs=38.3
Q ss_pred HHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC
Q 035749 260 EMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGR 320 (405)
Q Consensus 260 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 320 (405)
.+.+.|..+++ --..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 17 ~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 17 SIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 34556655443 3344555555666677888888888777666677777777777777664
No 349
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=26.53 E-value=1.5e+02 Score=19.82 Aligned_cols=43 Identities=7% Similarity=-0.029 Sum_probs=25.4
Q ss_pred HHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 117 LFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
+|+.+....+.|+...-..-+..+...++++.|..+.-.+...
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 4555555555555443333344455677888888887776653
No 350
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=25.69 E-value=1.6e+02 Score=19.92 Aligned_cols=63 Identities=16% Similarity=0.266 Sum_probs=31.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCC--hHHHHHHHHHHHhCCCC
Q 035749 169 NTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKE--IEGALSLYSEMLSKGIK 232 (405)
Q Consensus 169 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 232 (405)
..++.-|...|+.++|.+.++++.... -....+...+..++-+.++ .+.+..++..+...|+-
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 455666667777777777777764211 1112222333333333321 34556666666655433
No 351
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=24.60 E-value=70 Score=19.42 Aligned_cols=26 Identities=12% Similarity=0.183 Sum_probs=22.2
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHc
Q 035749 22 YSTLINGLCRTGHTIVALNLFEEMIN 47 (405)
Q Consensus 22 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 47 (405)
...+.+-|+..|+++.|+.+|+.+++
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 34678889999999999999998875
No 352
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=24.42 E-value=2.8e+02 Score=22.43 Aligned_cols=76 Identities=12% Similarity=0.206 Sum_probs=45.3
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHH----HHhcCCHHHHHHHHhhc
Q 035749 256 KLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDG----LCKSGRLKIAWELFHSL 331 (405)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~~ 331 (405)
+++..+.+.++.|...++..++..+.+.=.++.+..+|+.+...|...-..+..+++.. .....++++...+++..
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~ 288 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKST 288 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 34455566677777777777777777777788888888888776633211111222221 22344677777777653
No 353
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=24.19 E-value=1.5e+02 Score=25.61 Aligned_cols=60 Identities=10% Similarity=0.151 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhccCCCcCcc--------HHHHH-HHHHHHHcCCCHHHHHHHHHHHH
Q 035749 308 YSCLIDGLCKSGRLKIAWELFHSLPRGVLIAD--------VVTYN-IMIHALCADGKMDKAHDLFLDME 367 (405)
Q Consensus 308 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------~~~~~-~l~~~~~~~g~~~~A~~~~~~~~ 367 (405)
.+.+...|.+.++..-+..+++.+...+..|+ ..+|. .++..+...+++.+|.+.+..+.
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~ 247 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAF 247 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHH
Confidence 45566667777777777777766655433221 12222 23444455666666666555443
No 354
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=23.90 E-value=60 Score=24.93 Aligned_cols=56 Identities=9% Similarity=0.109 Sum_probs=33.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCccHhh-------HHHHHHHHH--cCCCHHHHHHHHHHHH
Q 035749 102 IRGFCYANDSNEAKRLFIEMMDQGVQPNVVT-------FSVIMDELC--KNGKMEEASQLLELMI 157 (405)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~~~~~~a~~~~~~~~ 157 (405)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 3445677888888888887776655544222 233333332 5677776666666543
No 355
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=22.55 E-value=1.2e+02 Score=21.94 Aligned_cols=47 Identities=11% Similarity=0.045 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHh
Q 035749 60 AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCY 107 (405)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 107 (405)
...++.++..++...-.+.++-.+.+....| ..+..+|..-++.+++
T Consensus 111 ~~l~~Qll~l~Aed~AieDaIy~L~~al~~g-~I~ld~ylK~vR~LaR 157 (174)
T 2p22_A 111 TDGLNQLYNLVAQDYALTDTIECLSRMLHRG-TIPLDTFVKQGRELAR 157 (174)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 3445666666666666666666666666555 3455555555554443
No 356
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.52 E-value=3.4e+02 Score=22.72 Aligned_cols=57 Identities=16% Similarity=0.080 Sum_probs=35.5
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhcC----------------CCccHHHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 035749 276 FIDGLCKNGYIVEALELFRTLRILK----------------CELDIRSYSCLIDGLCKSGRLKIAWELFHSLP 332 (405)
Q Consensus 276 l~~~~~~~~~~~~a~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 332 (405)
++.......+.+++.+.++.+...- ..........+++.|...|+.+.|..++++..
T Consensus 82 ~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~ 154 (393)
T 4b4t_O 82 LLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLE 154 (393)
T ss_dssp THHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4455666778888888887663211 11223444556667777788888877777654
No 357
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=22.49 E-value=3.9e+02 Score=23.37 Aligned_cols=74 Identities=11% Similarity=-0.072 Sum_probs=54.7
Q ss_pred HHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 035749 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCK 317 (405)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (405)
+....-...++.|...|..+.... |.+...++.+.-.....|+.-.|.-.|-+..... .|-..+...+...+.+
T Consensus 159 GDL~RY~~~~~~A~~~Y~~A~~~~-P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~-~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 159 GDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhC-CCCCchHHHHHHHHhcccccHHHHHHHHHHHhcC-CCChhHHHHHHHHHHH
Confidence 333444556789999999988874 6677888888888888888888887777776654 5677777777766654
No 358
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=22.40 E-value=1.1e+02 Score=22.81 Aligned_cols=214 Identities=11% Similarity=0.033 Sum_probs=0.0
Q ss_pred hHHHHHHhhcCCCCChhHHH--HHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHH
Q 035749 4 AALFTKLKAFGCEPNVITYS--TLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKE 81 (405)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 81 (405)
.++++.+.+.|..++..... ..+...+..|+.+-..-+++.-.... ...+..-...+..+..... .+
T Consensus 22 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~------~~~~~~~~t~L~~A~~~~~-----~~ 90 (240)
T 3eu9_A 22 YERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVD------QLGGDLNSTPLHWATRQGH-----LS 90 (240)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT------CCBTTTTBCHHHHHHHHTC-----HH
T ss_pred hHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcch------hhcCCcCCChhHHHHHcCC-----HH
Q ss_pred HHHHHHhCCCCCChHHHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 82 LLLQMKDKNINPDVVTYN--SVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
+++.+.+.|..++..... ..+...+..|+.+-+..+++.-...... +..-.+.+..+....+..+-..-+.+.-...
T Consensus 91 ~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~-~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~ 169 (240)
T 3eu9_A 91 MVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM-DQNGMTPLMWAAYRTHSVDPTRLLLTFNVSV 169 (240)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHCCSSTTHHHHHHTTCCT
T ss_pred HHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcccc-CCCCCcHHHHHHHhCChHHHHHHHHhcCCCc
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCC
Q 035749 160 GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIK 232 (405)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 232 (405)
. ..+...-...+...+..|+.+-+..+++. ...+......-...+....+.|+.+-+..+++.....++.
T Consensus 170 ~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~ 239 (240)
T 3eu9_A 170 N-LGDKYHKNTALHWAVLAGNTTVISLLLEA--GANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYD 239 (240)
T ss_dssp T-CCCTTTCCCHHHHHHHHTCHHHHHHHHHH--TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC------
T ss_pred c-hhhccCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccCcC
No 359
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=22.33 E-value=97 Score=20.79 Aligned_cols=45 Identities=9% Similarity=-0.085 Sum_probs=19.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHH
Q 035749 172 MDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGA 219 (405)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 219 (405)
|...+.+++.+-|.++++-..+.| +...|.+++..|...=+++-+
T Consensus 39 ietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvV 83 (125)
T 3qil_A 39 MQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVV 83 (125)
T ss_dssp HHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHH
Confidence 333344444444444444444433 333444444444444444433
No 360
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=22.25 E-value=1.7e+02 Score=20.85 Aligned_cols=21 Identities=10% Similarity=0.389 Sum_probs=9.8
Q ss_pred HHHHHhhcCChHHHHHHHHHH
Q 035749 206 LINGYCKNKEIEGALSLYSEM 226 (405)
Q Consensus 206 l~~~~~~~~~~~~a~~~~~~~ 226 (405)
++.-|...++.++|...++++
T Consensus 16 ii~EYf~~~D~~Ea~~~l~eL 36 (165)
T 2rg8_A 16 IIQEYFEHGDTNEVAEMLRDL 36 (165)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHh
Confidence 344444444555554444443
No 361
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=21.35 E-value=3.5e+02 Score=22.42 Aligned_cols=213 Identities=12% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC-CCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 035749 99 NSVIRGFCYANDSNEAKRLFIEMMDQG-VQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCL 177 (405)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (405)
..++.-|...|+.++|.+.++++..-+ ..+...........=.+....+.+-.++..+...++-+.......+...+..
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~lle~ 95 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVLDQ 95 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhh
Q ss_pred cCC----HHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccc----
Q 035749 178 TGR----VNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIH---- 249 (405)
Q Consensus 178 ~~~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---- 249 (405)
..+ ...|..++..+...-+..+......+...+...+...-...++..+.+. ..-..+...+.+.|
T Consensus 96 l~Dl~iDiP~a~~~la~f~ar~i~~~~l~~~~l~~~l~~G~~~~l~l~vl~~~~k~------~G~~~l~~l~~~sgl~l~ 169 (364)
T 3l6a_A 96 CPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLESGTHFPLFLLCLQQLAKL------QDREWLTELFQQSKVNMQ 169 (364)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHTTSSCHHHHHHHHGGGTTTTHHHHHHHHHHHH------SCHHHHHHHHHHHTCCSG
T ss_pred ChHhccccccHHHHHHHHHHHHHHcCCCCHHHHHHHhcccchHHHHHHHHHHHHHh------cCHHHHHHHHHHcCCCHH
Q ss_pred --------cHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 035749 250 --------QVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCK 317 (405)
Q Consensus 250 --------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (405)
..+...+.++.---..+.|-...-..+.......-..++..+..+.-......++......+..+.++
T Consensus 170 ~FlPe~~~~~~~~~e~~~~~~L~~l~~~~~l~~~L~~~l~~~~~~~~i~~wik~n~~~~~~~~~~fir~L~t~v~~ 245 (364)
T 3l6a_A 170 KMLPEIDQNKDRMLEILEGKGLSFLFPLLKLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQ 245 (364)
T ss_dssp GGSCGGGCSHHHHHHHHHHHTCGGGCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHSCHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCccccchhHHHHHHHhCCCcccCCHHHHHHHHHHHHHcCCChHHHHHHHHHhCCcccCCCHHHHHHHHHHHHH
No 362
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=21.25 E-value=1.4e+02 Score=21.54 Aligned_cols=52 Identities=10% Similarity=0.087 Sum_probs=42.2
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCCh
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFV 76 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 76 (405)
....++.++..++...-.+.++-.+.++...+ ..+..+|..-++.+++..-+
T Consensus 110 ~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g-------~I~ld~ylK~vR~LaReQF~ 161 (174)
T 2p22_A 110 KTDGLNQLYNLVAQDYALTDTIECLSRMLHRG-------TIPLDTFVKQGRELARQQFL 161 (174)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------SSCHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHH
Confidence 34467899999999999999999999999987 56788888888887765433
No 363
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=21.06 E-value=1.6e+02 Score=18.31 Aligned_cols=60 Identities=15% Similarity=0.223 Sum_probs=36.5
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHH
Q 035749 5 ALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDK 78 (405)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 78 (405)
.+++.+.+.|+ .+..-+..+-. .....++|..+++.+.++| ..+|..++.++.+.+...-
T Consensus 26 ~lld~L~~~~v-lt~~~~e~I~~---~~t~~~kar~Lld~l~~kG----------~~af~~F~~aL~~~~~~~L 85 (94)
T 2p1h_A 26 YIMDHMISDGF-LTISEEEKVRN---EPTQQQRAAMLIKMILKKD----------NDSYVSFYNALLHEGYKDL 85 (94)
T ss_dssp HHHHHHHHHTS-SCHHHHHHHHT---SSSHHHHHHHHHHHHTTSC----------HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHCCC-CCHHHHHHHHc---CCChHHHHHHHHHHHHHcC----------HHHHHHHHHHHHHcCHHHH
Confidence 35555665553 23333332222 3567788999998886554 5677888887777665433
No 364
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=21.01 E-value=1.1e+02 Score=22.88 Aligned_cols=53 Identities=15% Similarity=0.071 Sum_probs=27.2
Q ss_pred HHHHhhcCChHHHHHHHHHHHhCCCCCchhh--HHHHHHHHHccccHHHHHHHHHHHHH
Q 035749 207 INGYCKNKEIEGALSLYSEMLSKGIKPTVVT--YNTLFIGLFEIHQVERAFKLFDEMQR 263 (405)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~ 263 (405)
+...++.|+.+-+. .+.+.|..++... -...+......++...+..+.+.+.+
T Consensus 181 L~~A~~~~~~~~v~----~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 181 LHIAARENRYDCVV----LFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHHHHTTCHHHHH----HHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHhHHH----HHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34445566655443 3344444333211 11223344567777778887777665
No 365
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=20.99 E-value=82 Score=18.67 Aligned_cols=34 Identities=15% Similarity=0.134 Sum_probs=21.2
Q ss_pred ChHhHHHHHHhhc-CCCCChhHHHHHHHHHHhcCch
Q 035749 1 MEAAALFTKLKAF-GCEPNVITYSTLINGLCRTGHT 35 (405)
Q Consensus 1 ~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~ 35 (405)
++|...|..|++. ++.|+ .+|...+.....--+|
T Consensus 15 eea~~~F~~LL~e~~V~~~-~tWe~~~~~i~~DpRY 49 (71)
T 1uzc_A 15 EEAKQAFKELLKEKRVPSN-ASWEQAMKMIINDPRY 49 (71)
T ss_dssp HHHHHHHHHHHHHTTCCTT-CCHHHHHHHHHTSGGG
T ss_pred HHHHHHHHHHHHHcCcCCC-CCHHHHHHHHccCccc
Confidence 4677888888765 44433 4677777766554333
No 366
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=20.06 E-value=7e+02 Score=25.35 Aligned_cols=32 Identities=6% Similarity=-0.025 Sum_probs=15.7
Q ss_pred ccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 035749 247 EIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGL 280 (405)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 280 (405)
..+++..|++++.++.+. .++...+..++..+
T Consensus 1296 ~~~~~g~~~k~l~k~~~~--k~~~~~~~~~~~~~ 1327 (1354)
T 3lxu_X 1296 AHGHYGRMYKYVVKLIEE--KRTRDHFVELAAIN 1327 (1354)
T ss_dssp HHTCHHHHHHHHHHHHHH--TCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHH
Confidence 455555555555555544 23444444444433
Done!