BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035751
(195 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 57/108 (52%)
Query: 6 DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
D+S N G IPK +G+ L +LNL HN ++G+IP ++ L LDLS NKL+GRIP
Sbjct: 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697
Query: 66 KQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPL 113
+ N L G IP QF TF ++ N LCG PL
Sbjct: 698 QAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 745
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 50/105 (47%)
Query: 7 LSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPK 66
L +N F G+IP L N L L+LS N L+G IP S +++ L L L N LEG IP+
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Query: 67 QXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFENDSYIGNIHLCGE 111
+ +N L G IP G T N + N L GE
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 38/59 (64%)
Query: 7 LSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
LS+NR GEIPK +G ++L +L LS+NS +GNIP + +L LDL+ N G IP
Sbjct: 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 6 DLSSNRFCGEI-PKVLGNFK-SLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGR 63
DLSSN F G I P + N K +L+ L L +N TG IP + N + L SL LSFN L G
Sbjct: 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 433
Query: 64 IPKQXXXXXXXXXXXXXYNRLWGRIPR 90
IP N L G IP+
Sbjct: 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 36/80 (45%)
Query: 10 NRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQXX 69
N GEIP+ L K+L+ L L N LTG IP N T L + LS N+L G IPK
Sbjct: 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511
Query: 70 XXXXXXXXXXXYNRLWGRIP 89
N G IP
Sbjct: 512 RLENLAILKLSNNSFSGNIP 531
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 30/58 (51%)
Query: 10 NRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQ 67
N GEIP L N +L ++LS+N LTG IP + L L LS N G IP +
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 6 DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPV-SFDNMTALESLDLSFNKLEGRI 64
DLS N F G +P G+ L+ L LS N+ +G +P+ + M L+ LDLSFN+ G +
Sbjct: 300 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL 359
Query: 65 PKQ 67
P+
Sbjct: 360 PES 362
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLE 61
+ D+S N+ G+ + + LK+LN+S N G IP + +L+ L L+ NK
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFT 282
Query: 62 GRIP 65
G IP
Sbjct: 283 GEIP 286
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 6 DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
D+SSN F IP LG+ +L+ L++S N L+G+ + T L+ L++S N+ G IP
Sbjct: 206 DVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 30 NLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQXXXXXXXXXXXXXYNRLWGRIP 89
N++ G+ +FDN ++ LD+S+N L G IPK+ +N + G IP
Sbjct: 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 7 LSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSF 44
LS+N F G IP LG+ +SL L+L+ N G IP +
Sbjct: 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Score = 29.6 bits (65), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 2 FRATDLSSNRFCGEIPKV--LGNFKSLKVLNLSHNSLTGNIPVSFD-NMTALESLDLSFN 58
+ DLS N G + + LG+ LK LN+S N+L VS + +LE LDLS N
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161
Query: 59 KLEG 62
+ G
Sbjct: 162 SISG 165
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 57/108 (52%)
Query: 6 DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
D+S N G IPK +G+ L +LNL HN ++G+IP ++ L LDLS NKL+GRIP
Sbjct: 635 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 694
Query: 66 KQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPL 113
+ N L G IP QF TF ++ N LCG PL
Sbjct: 695 QAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 742
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 50/105 (47%)
Query: 7 LSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPK 66
L +N F G+IP L N L L+LS N L+G IP S +++ L L L N LEG IP+
Sbjct: 398 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 457
Query: 67 QXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFENDSYIGNIHLCGE 111
+ +N L G IP G T N + N L GE
Sbjct: 458 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 502
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 38/59 (64%)
Query: 7 LSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
LS+NR GEIPK +G ++L +L LS+NS +GNIP + +L LDL+ N G IP
Sbjct: 494 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 552
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 6 DLSSNRFCGEI-PKVLGNFK-SLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGR 63
DLSSN F G I P + N K +L+ L L +N TG IP + N + L SL LSFN L G
Sbjct: 371 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 430
Query: 64 IPKQXXXXXXXXXXXXXYNRLWGRIPR 90
IP N L G IP+
Sbjct: 431 IPSSLGSLSKLRDLKLWLNMLEGEIPQ 457
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 38/88 (43%)
Query: 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLE 61
R L N GEIP+ L K+L+ L L N LTG IP N T L + LS N+L
Sbjct: 441 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 500
Query: 62 GRIPKQXXXXXXXXXXXXXYNRLWGRIP 89
G IPK N G IP
Sbjct: 501 GEIPKWIGRLENLAILKLSNNSFSGNIP 528
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 30/58 (51%)
Query: 10 NRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQ 67
N GEIP L N +L ++LS+N LTG IP + L L LS N G IP +
Sbjct: 473 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 530
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 6 DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPV-SFDNMTALESLDLSFNKLEGRI 64
DLS N F G +P G+ L+ L LS N+ +G +P+ + M L+ LDLSFN+ G +
Sbjct: 297 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL 356
Query: 65 PKQ 67
P+
Sbjct: 357 PES 359
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLE 61
+ D+S N+ G+ + + LK+LN+S N G IP + +L+ L L+ NK
Sbjct: 222 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFT 279
Query: 62 GRIP 65
G IP
Sbjct: 280 GEIP 283
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 6 DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
D+SSN F IP LG+ +L+ L++S N L+G+ + T L+ L++S N+ G IP
Sbjct: 203 DVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 261
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 30 NLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQXXXXXXXXXXXXXYNRLWGRIP 89
N++ G+ +FDN ++ LD+S+N L G IPK+ +N + G IP
Sbjct: 611 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 670
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 7 LSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSF 44
LS+N F G IP LG+ +SL L+L+ N G IP +
Sbjct: 518 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 2 FRATDLSSNRFCGEIPKV--LGNFKSLKVLNLSHNSLTGNIPVSFD-NMTALESLDLSFN 58
+ DLS N G + + LG+ LK LN+S N+L VS + +LE LDLS N
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 158
Query: 59 KLEG 62
+ G
Sbjct: 159 SISG 162
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 55/136 (40%), Gaps = 24/136 (17%)
Query: 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSF--DNMTA--------- 49
+F + +S NR G+IP N +L ++LS N L G+ V F D T
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233
Query: 50 ------------LESLDLSFNKLEGRIPKQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTF 97
L LDL N++ G +P+ +N L G IP+G F
Sbjct: 234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRF 293
Query: 98 ENDSYIGNIHLCGEPL 113
+ +Y N LCG PL
Sbjct: 294 DVSAYANNKCLCGSPL 309
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 34/80 (42%)
Query: 10 NRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQXX 69
N G IP + L L ++H +++G IP + L +LD S+N L G +P
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 70 XXXXXXXXXXXYNRLWGRIP 89
NR+ G IP
Sbjct: 147 SLPNLVGITFDGNRISGAIP 166
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 33/51 (64%)
Query: 16 IPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPK 66
+PK L N+K L +++LS+N ++ SF NMT L +L LS+N+L P+
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPR 96
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%)
Query: 6 DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL 60
DLS+NR + N L L LS+N L P +FD + +L L L N +
Sbjct: 60 DLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI 114
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 7 LSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL 60
LS NR P+ KSL++L+L N ++ +F++++AL L + N L
Sbjct: 85 LSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 20 LGNFKSLKVLNLSHNSLTG-NIPVSFDNMTALESLDLSFNKLEG 62
+G+ K+LK LN++HN + +P F N+T LE LDLS NK++
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 20 LGNFKSLKVLNLSHNSLTG-NIPVSFDNMTALESLDLSFNKLEG 62
+G+ K+LK LN++HN + +P F N+T LE LDLS NK++
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 20 LGNFKSLKVLNLSHNSLTG-NIPVSFDNMTALESLDLSFNKLEG 62
+G+ K+LK LN++HN + +P F N+T LE LDLS NK++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 20 LGNFKSLKVLNLSHNSLTG-NIPVSFDNMTALESLDLSFNKLEG 62
+G+ K+LK LN++HN + +P F N+T LE LDLS NK++
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 20 LGNFKSLKVLNLSHNSLTG-NIPVSFDNMTALESLDLSFNKLEG 62
+G+ K+LK LN++HN + +P F N+T LE LDLS NK++
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 20 LGNFKSLKVLNLSHNSLTG-NIPVSFDNMTALESLDLSFNKLEG 62
+G+ K+LK LN++HN + +P F N+T LE LDLS NK++
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 6 DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL 60
DLS + P + SL+VLN+SHN+ + + +L+ LD S N +
Sbjct: 500 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 20 LGNFKSLKVLNLSHNSLTG-NIPVSFDNMTALESLDLSFNKLEG 62
+G+ K+LK LN++HN + +P F N+T LE LDLS NK++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 6 DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL 60
DLS + P + SL+VLN+SHN+ + + +L+ LD S N +
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 20 LGNFKSLKVLNLSHNSLTG-NIPVSFDNMTALESLDLSFNKLEG 62
+G+ K+LK LN++HN + +P F N+T LE LDLS NK++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 6 DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
DLS + P + SL+VLN++ N L FD +T+L+ + L N + P
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Query: 66 K 66
+
Sbjct: 536 R 536
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 5/99 (5%)
Query: 19 VLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQXXXXXXXXXXX 78
V +L LNL+HN L FD +T L LDLS+N+L+ +P+
Sbjct: 128 VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDL 186
Query: 79 XXYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTC 117
Y +P G F+ + + I L P TC
Sbjct: 187 RLYQNQLKSVPDG----VFDRLTSLQYIWLHDNPWDCTC 221
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 33.1 bits (74), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 19 VLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQXXXXXXXXXXX 78
V +L L L N L P FD++T L L L +N+L+ +PK
Sbjct: 104 VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKEL 162
Query: 79 XXYNRLWGRIPRG 91
YN R+P G
Sbjct: 163 RLYNNQLKRVPEG 175
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 5/112 (4%)
Query: 7 LSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPK 66
L N+ P+V + L L+L +N L FD +T+L+ L L N+L+ R+P+
Sbjct: 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPE 174
Query: 67 QXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCS 118
N R+P G F++ E + + L P TC+
Sbjct: 175 GAFDKLTELKTLKLDNNQLKRVPEG-AFDSLEK---LKMLQLQENPWDCTCN 222
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 20 LGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPK 66
L N L+ LNLSHN G +F LE LDL+F +L P+
Sbjct: 369 LKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQ 415
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 3 RATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL 60
R T L+ +R +V G L L+LSHN L ++P+ + AL LD+SFN+L
Sbjct: 56 RLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 3 RATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL 60
R T L+ +R +V G L L+LSHN L ++P+ + AL LD+SFN+L
Sbjct: 56 RLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 3 RATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL 60
R T L+ +R +V G L L+LSHN L ++P+ + AL LD+SFN+L
Sbjct: 56 RLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 3 RATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL 60
R T L+ +R +V G L L+LSHN L ++P+ + AL LD+SFN+L
Sbjct: 56 RLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 3 RATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL 60
R T L+ +R +V G L L+LSHN L ++P+ + AL LD+SFN+L
Sbjct: 56 RLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 3 RATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL 60
R T L+ +R +V G L L+LSHN L ++P+ + AL LD+SFN+L
Sbjct: 56 RLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 3 RATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL 60
R T L+ +R +V G L L+LSHN L ++P+ + AL LD+SFN+L
Sbjct: 56 RLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 3 RATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL 60
R T L+ +R +V G L L+LSHN L ++P+ + AL LD+SFN+L
Sbjct: 56 RLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 3 RATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL 60
R T L+ +R +V G L L+LSHN L ++P+ + AL LD+SFN+L
Sbjct: 56 RLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 3 RATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL 60
R T L+ +R +V G L L+LSHN L ++P+ + AL LD+SFN+L
Sbjct: 57 RLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 113
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 20 LGNFKSLKVLNLSHNSL-TGNIPVSFDNMTALESLDLSFNKLE 61
+G +LK LN++HN + + +P F N+T L +DLS+N ++
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 19 VLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLE 61
V L++LN+SHN+L ++ + +L +LD SFN++E
Sbjct: 492 VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 20 LGNFKSLKVLNLSHNSL-TGNIPVSFDNMTALESLDLSFNKLE 61
+G +LK LN++HN + + +P F N+T L +DLS+N ++
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 161
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 19 VLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLE 61
V L++LN+SHN+L ++ + +L +LD SFN++E
Sbjct: 487 VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 529
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 3 RATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL 60
R DLS +V K LKVLNL++N + +F + L+ L+LS+N L
Sbjct: 269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 19 VLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL 60
V L+VL L+HN L P F ++TAL L L+ N+L
Sbjct: 475 VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516
>pdb|1LD4|M Chain M, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|N Chain N, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|O Chain O, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|P Chain P, Placement Of The Structural Proteins In Sindbis Virus
pdb|3J0F|E Chain E, Sindbis Virion
pdb|3J0F|F Chain F, Sindbis Virion
pdb|3J0F|G Chain G, Sindbis Virion
pdb|3J0F|H Chain H, Sindbis Virion
Length = 439
Score = 30.4 bits (67), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 13/70 (18%)
Query: 106 IHLCGEPLTVTCSNDAVPKAPPSASTDHEEDE-------TTSWFDWKMAKMGYAFGLVIG 158
+ LCG+ TC+ + P A ST H+ D+ TSW W A G A L+I
Sbjct: 367 VSLCGK--KTTCNAECKPPADHIVSTPHKNDQEFQAAISKTSW-SWLFALFGGASSLLI- 422
Query: 159 LSIGYMVFSA 168
IG M+F+
Sbjct: 423 --IGLMIFAC 430
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 30.0 bits (66), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 7 LSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVS-FDNMTALESLDLSFNKLEGRIP 65
L++N+ P V + +L+ L + N LT IP FD +T L LDL+ N L+ IP
Sbjct: 40 LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLKS-IP 97
Query: 66 KQXXXXXXXXXXXXXYNRLW 85
+ YN W
Sbjct: 98 RGAFDNLKSLTHIYLYNNPW 117
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 30.0 bits (66), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 7 LSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVS-FDNMTALESLDLSFNKL 60
L N+ P V + +LK L L N L G +PV FD++T L LDL N+L
Sbjct: 47 LHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQL 100
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 8/114 (7%)
Query: 7 LSSNRFCGEIP-KVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
L SN+ G +P V + L VL+L N LT FD + L+ L + NKL +P
Sbjct: 71 LGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELP 128
Query: 66 KQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSN 119
+ N+L IP G F+ S + + +L G P C +
Sbjct: 129 RGIERLTHLTHLALDQNQL-KSIPHG----AFDRLSSLTHAYLFGNPWDCECRD 177
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 17 PKVLGNFKSLKVLNLSHNSLTGNIPVS-FDNMTALESLDLSFNKLE 61
P V + L LNL+ N LT +PV FD +T L L L N+L+
Sbjct: 57 PGVFDSLTQLTYLNLAVNQLTA-LPVGVFDKLTKLTHLALHINQLK 101
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 27 KVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQXXXXXXXXXXXXXYNRLWG 86
+VL+L N +T P FD++T L L+L+ N+L +P +
Sbjct: 43 QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTA-LPVGVFDKLTKLTHLALHINQLK 101
Query: 87 RIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSN 119
IP G F+N + +I+L P CS+
Sbjct: 102 SIPMG----VFDNLKSLTHIYLFNNPWDCECSD 130
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 18 KVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFN 58
K+ LK LNL N ++ +P SF+++ +L SL+L+ N
Sbjct: 96 KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 19 VLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLE 61
+ G L L L N LTG P +F+ + ++ L L NK++
Sbjct: 49 LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Query: 27 KVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQXXXXXXXXXXXXXYNRLWG 86
+VL L N +T P FD +T L LDL N+L +P +
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLK 91
Query: 87 RIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSN 119
IPRG F+N + +I L P CS+
Sbjct: 92 SIPRG----AFDNLKSLTHIWLLNNPWDCACSD 120
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Query: 27 KVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQXXXXXXXXXXXXXYNRLWG 86
+VL L N +T P FD +T L LDL N+L +P +
Sbjct: 41 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLK 99
Query: 87 RIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSN 119
IPRG F+N + +I L P CS+
Sbjct: 100 SIPRG----AFDNLKSLTHIWLLNNPWDCACSD 128
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 6 DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL 60
+LSSN L SL+ LN S N +T P++ N+T LE LD+S NK+
Sbjct: 135 ELSSNTISD--ISALSGLTSLQQLNFSSNQVTDLKPLA--NLTTLERLDISSNKV 185
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Query: 27 KVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQXXXXXXXXXXXXXYNRLWG 86
+VL L N +T P FD +T L LDL N+L +P +
Sbjct: 33 QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLK 91
Query: 87 RIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSN 119
IPRG F+N + +I L P CS+
Sbjct: 92 SIPRG----AFDNLRSLTHIWLLNNPWDCACSD 120
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 7 LSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPK 66
L NR P V L L+L +N LT FD +T L L L+ N+L+ IP+
Sbjct: 37 LYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS-IPR 95
>pdb|2P85|A Chain A, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|B Chain B, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|C Chain C, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|D Chain D, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|E Chain E, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|F Chain F, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|3T3S|A Chain A, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|B Chain B, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|C Chain C, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|D Chain D, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|E Chain E, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|F Chain F, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|G Chain G, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|H Chain H, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|4EJG|A Chain A, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|B Chain B, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|C Chain C, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|D Chain D, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|E Chain E, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|F Chain F, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|G Chain G, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|H Chain H, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJH|A Chain A, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|B Chain B, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|C Chain C, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|D Chain D, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|E Chain E, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|F Chain F, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|G Chain G, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|H Chain H, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJI|A Chain A, Human Cytochrome P450 2a13 In Complex With Two Molecules
Of 4- (Methylnitrosamino)-1-(3-Puridyl)-1-Butanone
Length = 476
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 103 IGNIHLCGEPLTVTCSNDAVPKAPPSASTDHEEDETTSWFDWKMAKMGYAF 153
+ IHL + V C +DAV +A + + + FDW G AF
Sbjct: 46 VFTIHLGPRRVVVLCGHDAVKEALVDQAEEFSGRGEQATFDWLFKGYGVAF 96
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 20 LGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIP 65
L N + L+ LNLS+N G +F LE LD++F L + P
Sbjct: 371 LKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAP 416
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLE 61
+ DL SN+ IPK + ++L+ LN++ N L FD +T+L+ + L N +
Sbjct: 423 IKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481
Query: 62 GRIPK 66
P+
Sbjct: 482 CSCPR 486
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 15 EIPKVLGNFKSLKVLNLSHNSLTG 38
E+P + N +L+VL+LSHN LT
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLTS 284
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSF--DNMTALESLDLSFNK 59
F + + N F + + K L+ L L N L V+ NM++LE+LD+S N
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414
Query: 60 LEG 62
L
Sbjct: 415 LNS 417
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 3 RATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALE 51
+ DL +NR IPK + + ++L+ LN++ N L FD +T+L+
Sbjct: 453 KVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQ 500
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 6 DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL 60
DLS + P + SL+VLN+SHN+ + + +L+ LD S N +
Sbjct: 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 22 NFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL-EGRIPK 66
N LKVLNLSH+ L + FD + AL+ L+L N +G I K
Sbjct: 423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQK 468
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 3 RATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL 60
++ DLS+NR L +L+ L L+ N + SF ++ +LE LDLS+N L
Sbjct: 55 KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112
>pdb|3NDQ|A Chain A, Structure Of Human Tfiis Domain Ii
Length = 108
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVS-FDNMTALE 51
R TD+ ++ + + N K K NL N L GNIP F MTA E
Sbjct: 56 IRNTDM---KYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEE 103
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced
By Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 3 RATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL 60
++ DLS+NR L +L+ L L+ N + SF ++ +LE LDLS+N L
Sbjct: 29 KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 86
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 19 VLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLE 61
V SL LNLS N L FD +T L+ L L+ N+L+
Sbjct: 71 VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ 113
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 24 KSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFN 58
++L +L L N+L G +F +T LE LDLS N
Sbjct: 55 RNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDN 89
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 19 VLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLE 61
V LK L L+ N L +FD +T L++L LS N+L+
Sbjct: 126 VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 3 RATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLE 61
R DL NR +F L+ L L+ N ++ P +F+N+ L +L L N+L+
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 19 VLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLE 61
V LK L L+ N L +FD +T L++L LS N+L+
Sbjct: 126 VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 6 DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL 60
+LS NR P SL+ L L H + +FD++ +LE L+LS N L
Sbjct: 184 ELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 25 SLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPK 66
++ VLNL+HN L P +F + L LD FN + P+
Sbjct: 26 NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPE 67
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 6 DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL 60
+LS NR P SL+ L L H + +FD++ +LE L+LS N L
Sbjct: 184 ELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 25 SLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPK 66
++ VLNL+HN L +F + L SLD+ FN + P+
Sbjct: 36 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 77
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 25 SLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPK 66
++ VLNL+HN L +F + L SLD+ FN + P+
Sbjct: 31 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 72
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 17 PKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPK 66
P +K L+ ++LS+N ++ P +F + +L SL L NK+ +PK
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPK 97
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 17 PKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPK 66
P +K L+ ++LS+N ++ P +F + +L SL L NK+ +PK
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPK 97
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain
Structure
Length = 680
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 25 SLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPK 66
++ VLNL+HN L +F + L SLD+ FN + P+
Sbjct: 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 67
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 6 DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL 60
+LSSN L SL+ L+ S N +T P++ N+T LE LD+S NK+
Sbjct: 135 ELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKPLA--NLTTLERLDISSNKV 185
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 6 DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL 60
+LSSN L SL+ L+ S N +T P++ N+T LE LD+S NK+
Sbjct: 135 ELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKPLA--NLTTLERLDISSNKV 185
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 29 LNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEG 62
LNLS N L F+N+ LE LDLS+N +
Sbjct: 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA 361
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 2 FRATDLSSNRFCGEIPK-VLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKL 60
+ + SN+ ++P+ + G LK LNL+ N L FD +T+L+ + L N
Sbjct: 172 LESIEFGSNKL-RQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPW 230
Query: 61 EGRIPK 66
+ P+
Sbjct: 231 DCSCPR 236
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 26.6 bits (57), Expect = 9.7, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 11/66 (16%)
Query: 4 ATDLSSNRFCGEIPKVLGNFKS-LKVLNLSHNSLTGNIPVS--------FDNMTALESLD 54
+ +LS+N+ + PK L + S L +NL N LT IP + F N L S+D
Sbjct: 437 SINLSNNQI-SKFPKELFSTGSPLSSINLXGNXLT-EIPKNSLKDENENFKNTYLLTSID 494
Query: 55 LSFNKL 60
L FNKL
Sbjct: 495 LRFNKL 500
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,273,489
Number of Sequences: 62578
Number of extensions: 191832
Number of successful extensions: 628
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 427
Number of HSP's gapped (non-prelim): 197
length of query: 195
length of database: 14,973,337
effective HSP length: 94
effective length of query: 101
effective length of database: 9,091,005
effective search space: 918191505
effective search space used: 918191505
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)