Query 035751
Match_columns 195
No_of_seqs 329 out of 2462
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 06:04:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035751.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035751hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03150 hypothetical protein; 99.8 5.5E-19 1.2E-23 153.1 11.5 116 2-117 420-537 (623)
2 PLN00113 leucine-rich repeat r 99.8 1.8E-18 3.9E-23 157.0 11.3 112 1-112 500-611 (968)
3 PLN00113 leucine-rich repeat r 99.6 9.2E-15 2E-19 132.9 9.0 106 1-106 476-582 (968)
4 PLN03150 hypothetical protein; 99.3 8.4E-12 1.8E-16 108.6 10.6 89 1-89 443-532 (623)
5 PF13855 LRR_8: Leucine rich r 99.2 8E-12 1.7E-16 76.1 2.6 58 2-59 3-60 (61)
6 PF14580 LRR_9: Leucine-rich r 99.2 2.2E-11 4.9E-16 89.3 4.1 103 2-113 21-125 (175)
7 PF13855 LRR_8: Leucine rich r 99.2 1.5E-11 3.2E-16 74.9 2.4 61 24-84 1-61 (61)
8 KOG0617 Ras suppressor protein 99.2 1.9E-12 4.1E-17 93.5 -2.1 80 3-85 36-115 (264)
9 KOG4194 Membrane glycoprotein 99.1 2.6E-12 5.6E-17 107.6 -2.7 90 1-90 294-383 (873)
10 KOG0617 Ras suppressor protein 99.1 5.3E-12 1.1E-16 91.2 -1.4 103 1-105 57-160 (264)
11 KOG4194 Membrane glycoprotein 99.1 1.3E-11 2.7E-16 103.5 -1.7 89 1-90 318-409 (873)
12 PF14580 LRR_9: Leucine-rich r 99.0 6.8E-10 1.5E-14 81.5 4.6 82 1-85 43-126 (175)
13 KOG4237 Extracellular matrix p 98.9 7.6E-10 1.7E-14 89.1 2.5 78 12-89 261-339 (498)
14 KOG4237 Extracellular matrix p 98.9 1.4E-09 3.1E-14 87.5 3.8 85 1-85 275-359 (498)
15 KOG0472 Leucine-rich repeat pr 98.9 4.9E-10 1.1E-14 90.5 0.5 102 2-105 437-538 (565)
16 KOG0472 Leucine-rich repeat pr 98.9 1.8E-10 3.9E-15 92.9 -1.9 84 20-106 224-308 (565)
17 KOG0618 Serine/threonine phosp 98.8 5E-10 1.1E-14 98.1 -0.1 104 1-107 384-488 (1081)
18 KOG0444 Cytoskeletal regulator 98.8 9.9E-10 2.2E-14 93.3 0.7 82 2-85 105-186 (1255)
19 KOG1259 Nischarin, modulator o 98.7 3E-09 6.5E-14 83.3 0.6 80 2-85 286-365 (490)
20 KOG0444 Cytoskeletal regulator 98.7 3.2E-09 6.8E-14 90.3 0.1 102 2-105 80-183 (1255)
21 KOG4579 Leucine-rich repeat (L 98.6 3E-09 6.5E-14 74.2 -1.2 86 2-91 55-141 (177)
22 PLN03210 Resistant to P. syrin 98.6 1.6E-07 3.4E-12 87.4 9.6 103 1-105 612-714 (1153)
23 PRK15387 E3 ubiquitin-protein 98.6 5.5E-08 1.2E-12 86.1 4.9 39 50-89 424-462 (788)
24 KOG0618 Serine/threonine phosp 98.6 4.4E-09 9.5E-14 92.3 -2.4 94 2-97 361-454 (1081)
25 KOG0532 Leucine-rich repeat (L 98.5 1.3E-08 2.7E-13 85.5 -1.0 84 2-90 145-228 (722)
26 PF12799 LRR_4: Leucine Rich r 98.5 2.5E-07 5.4E-12 52.2 3.9 35 2-37 3-37 (44)
27 PRK15370 E3 ubiquitin-protein 98.5 6.5E-07 1.4E-11 79.5 8.4 77 2-85 201-296 (754)
28 PF12799 LRR_4: Leucine Rich r 98.5 2E-07 4.2E-12 52.6 3.2 36 25-61 2-37 (44)
29 KOG1859 Leucine-rich repeat pr 98.4 9.2E-09 2E-13 88.6 -3.4 80 2-86 189-268 (1096)
30 KOG1259 Nischarin, modulator o 98.4 3.8E-08 8.3E-13 77.2 0.2 79 2-85 309-387 (490)
31 PRK15387 E3 ubiquitin-protein 98.4 3.5E-07 7.5E-12 81.1 5.6 33 49-85 383-415 (788)
32 PRK15370 E3 ubiquitin-protein 98.4 5.7E-07 1.2E-11 79.8 6.7 79 2-90 243-321 (754)
33 cd00116 LRR_RI Leucine-rich re 98.4 2.1E-07 4.5E-12 74.4 2.7 84 2-85 110-206 (319)
34 PLN03210 Resistant to P. syrin 98.3 2.1E-06 4.5E-11 80.1 8.5 79 1-81 779-878 (1153)
35 COG4886 Leucine-rich repeat (L 98.3 4E-07 8.7E-12 75.3 2.6 85 2-90 118-203 (394)
36 cd00116 LRR_RI Leucine-rich re 98.3 4.1E-07 8.8E-12 72.7 1.9 86 1-86 82-179 (319)
37 COG4886 Leucine-rich repeat (L 98.2 7.9E-07 1.7E-11 73.5 1.6 82 1-85 141-222 (394)
38 KOG4658 Apoptotic ATPase [Sign 98.1 2.2E-06 4.7E-11 77.4 3.5 86 2-88 547-634 (889)
39 KOG1644 U2-associated snRNP A' 98.0 7.4E-06 1.6E-10 60.9 4.1 81 3-85 45-126 (233)
40 KOG4579 Leucine-rich repeat (L 98.0 5.1E-07 1.1E-11 63.2 -2.4 86 2-90 79-164 (177)
41 KOG1644 U2-associated snRNP A' 98.0 1.6E-05 3.5E-10 59.1 5.2 99 4-106 23-124 (233)
42 KOG4658 Apoptotic ATPase [Sign 98.0 4.4E-06 9.6E-11 75.5 2.6 82 1-83 572-653 (889)
43 KOG0532 Leucine-rich repeat (L 97.9 1.2E-06 2.7E-11 73.9 -1.2 84 2-90 168-251 (722)
44 KOG0531 Protein phosphatase 1, 97.8 5.4E-06 1.2E-10 69.2 1.1 80 1-85 96-175 (414)
45 KOG3207 Beta-tubulin folding c 97.8 6.7E-06 1.5E-10 67.4 1.6 84 1-85 223-314 (505)
46 KOG1859 Leucine-rich repeat pr 97.8 7.5E-07 1.6E-11 77.2 -4.5 80 2-85 166-245 (1096)
47 KOG0531 Protein phosphatase 1, 97.8 1E-05 2.3E-10 67.5 1.8 80 2-85 74-153 (414)
48 KOG2739 Leucine-rich acidic nu 97.3 0.00018 3.8E-09 55.5 2.3 64 20-85 61-129 (260)
49 KOG3207 Beta-tubulin folding c 97.2 0.00017 3.8E-09 59.4 2.1 84 1-86 247-340 (505)
50 KOG2982 Uncharacterized conser 97.2 0.00017 3.7E-09 56.9 1.8 84 2-85 73-159 (418)
51 PF00560 LRR_1: Leucine Rich R 97.1 0.00022 4.8E-09 33.7 1.2 21 1-22 1-21 (22)
52 PF00560 LRR_1: Leucine Rich R 96.6 0.0006 1.3E-08 32.2 0.2 18 26-44 2-19 (22)
53 KOG3665 ZYG-1-like serine/thre 96.4 0.0028 6E-08 56.3 3.3 81 2-84 150-232 (699)
54 KOG2739 Leucine-rich acidic nu 96.4 0.0026 5.6E-08 49.2 2.7 68 16-85 35-104 (260)
55 KOG1909 Ran GTPase-activating 96.4 0.00098 2.1E-08 53.6 0.2 85 1-85 186-283 (382)
56 KOG1909 Ran GTPase-activating 96.2 0.0029 6.3E-08 50.9 2.2 85 1-85 158-254 (382)
57 KOG3665 ZYG-1-like serine/thre 95.7 0.0076 1.6E-07 53.6 2.9 57 23-81 147-204 (699)
58 KOG0473 Leucine-rich repeat pr 95.7 0.00012 2.6E-09 55.9 -7.3 80 3-85 45-124 (326)
59 KOG2123 Uncharacterized conser 95.7 0.00097 2.1E-08 52.3 -2.6 81 3-87 22-103 (388)
60 PRK15386 type III secretion pr 95.6 0.031 6.8E-07 46.6 5.9 69 1-83 53-123 (426)
61 PRK15386 type III secretion pr 95.5 0.05 1.1E-06 45.4 6.4 76 1-85 73-169 (426)
62 PF13504 LRR_7: Leucine rich r 95.4 0.0089 1.9E-07 26.2 1.1 9 51-59 4-12 (17)
63 PF13306 LRR_5: Leucine rich r 95.4 0.045 9.8E-07 37.5 5.2 78 2-82 14-91 (129)
64 KOG2123 Uncharacterized conser 95.3 0.0014 3.1E-08 51.5 -2.8 75 2-78 43-123 (388)
65 COG5238 RNA1 Ran GTPase-activa 95.0 0.053 1.1E-06 42.8 5.0 13 2-14 32-44 (388)
66 smart00370 LRR Leucine-rich re 94.8 0.034 7.5E-07 27.0 2.4 14 48-61 2-15 (26)
67 smart00369 LRR_TYP Leucine-ric 94.8 0.034 7.5E-07 27.0 2.4 14 48-61 2-15 (26)
68 PF13306 LRR_5: Leucine rich r 94.1 0.092 2E-06 35.9 4.2 77 1-81 36-112 (129)
69 KOG2982 Uncharacterized conser 94.1 0.018 3.9E-07 45.8 0.5 64 22-85 69-134 (418)
70 smart00370 LRR Leucine-rich re 94.0 0.052 1.1E-06 26.4 2.0 17 23-39 1-17 (26)
71 smart00369 LRR_TYP Leucine-ric 94.0 0.052 1.1E-06 26.4 2.0 17 23-39 1-17 (26)
72 PF08693 SKG6: Transmembrane a 91.9 0.078 1.7E-06 28.8 0.8 23 148-170 16-38 (40)
73 PF01102 Glycophorin_A: Glycop 91.8 0.17 3.7E-06 34.9 2.7 16 145-160 67-82 (122)
74 KOG2120 SCF ubiquitin ligase, 91.4 0.054 1.2E-06 43.2 -0.2 56 22-79 311-370 (419)
75 COG5238 RNA1 Ran GTPase-activa 91.3 0.21 4.5E-06 39.5 3.0 39 22-60 90-132 (388)
76 KOG2120 SCF ubiquitin ligase, 91.2 0.011 2.3E-07 47.1 -4.2 85 2-86 187-274 (419)
77 PF13516 LRR_6: Leucine Rich r 90.4 0.043 9.3E-07 26.1 -1.0 13 49-61 3-15 (24)
78 KOG0473 Leucine-rich repeat pr 88.8 0.0093 2E-07 45.8 -6.1 69 18-89 36-104 (326)
79 PF04478 Mid2: Mid2 like cell 88.4 0.37 8.1E-06 34.3 2.1 26 147-172 54-79 (154)
80 smart00364 LRR_BAC Leucine-ric 88.4 0.34 7.4E-06 23.7 1.4 13 49-61 3-15 (26)
81 smart00365 LRR_SD22 Leucine-ri 88.3 0.47 1E-05 23.3 1.8 13 49-61 3-15 (26)
82 KOG3864 Uncharacterized conser 87.8 0.085 1.8E-06 39.6 -1.4 80 2-81 103-185 (221)
83 PF01299 Lamp: Lysosome-associ 85.4 0.68 1.5E-05 37.2 2.4 33 144-176 272-305 (306)
84 smart00368 LRR_RI Leucine rich 84.6 0.88 1.9E-05 22.5 1.8 11 50-60 4-14 (28)
85 PF01034 Syndecan: Syndecan do 81.5 0.48 1E-05 28.5 0.1 19 149-167 16-34 (64)
86 PF15050 SCIMP: SCIMP protein 79.8 1.7 3.6E-05 29.7 2.2 7 144-150 9-15 (133)
87 PF01102 Glycophorin_A: Glycop 78.4 1.3 2.7E-05 30.6 1.3 21 146-166 64-84 (122)
88 PF02439 Adeno_E3_CR2: Adenovi 78.2 2.4 5.3E-05 22.7 2.1 11 150-160 7-17 (38)
89 PRK11677 hypothetical protein; 77.4 4.6 0.0001 28.3 3.9 15 153-167 8-22 (134)
90 PF11770 GAPT: GRB2-binding ad 76.1 2.5 5.5E-05 30.0 2.3 6 187-192 48-53 (158)
91 PF13260 DUF4051: Protein of u 76.0 6.3 0.00014 22.2 3.4 24 172-195 23-46 (54)
92 KOG1947 Leucine rich repeat pr 75.3 2.2 4.7E-05 35.8 2.3 64 21-84 240-307 (482)
93 PF12191 stn_TNFRSF12A: Tumour 74.8 1.4 3.1E-05 30.3 0.8 20 153-172 88-107 (129)
94 KOG3763 mRNA export factor TAP 70.9 3 6.6E-05 36.1 2.1 32 3-34 221-254 (585)
95 TIGR00864 PCC polycystin catio 69.4 3.9 8.6E-05 41.9 2.7 33 30-62 1-33 (2740)
96 KOG4308 LRR-containing protein 69.3 0.24 5.3E-06 42.3 -4.8 84 2-85 206-303 (478)
97 PF14575 EphA2_TM: Ephrin type 69.0 6.7 0.00014 24.5 2.9 8 151-158 6-13 (75)
98 PF06295 DUF1043: Protein of u 67.7 8.4 0.00018 26.7 3.5 15 153-167 4-18 (128)
99 TIGR00864 PCC polycystin catio 66.8 3.9 8.5E-05 41.9 2.1 32 6-37 1-32 (2740)
100 PF07219 HemY_N: HemY protein 66.7 5 0.00011 26.9 2.1 20 173-192 39-58 (108)
101 PTZ00370 STEVOR; Provisional 65.9 6 0.00013 31.4 2.6 9 167-175 280-288 (296)
102 TIGR00985 3a0801s04tom mitocho 65.1 9.7 0.00021 27.2 3.4 24 149-172 9-32 (148)
103 TIGR01478 STEVOR variant surfa 64.7 6 0.00013 31.3 2.4 8 168-175 285-292 (295)
104 COG3105 Uncharacterized protei 64.5 5.5 0.00012 27.6 1.9 16 152-167 12-27 (138)
105 PF03672 UPF0154: Uncharacteri 61.6 5.5 0.00012 24.1 1.4 17 151-167 3-19 (64)
106 PRK11677 hypothetical protein; 60.9 6.9 0.00015 27.5 2.0 25 144-168 3-27 (134)
107 PF07204 Orthoreo_P10: Orthore 60.3 6.5 0.00014 25.6 1.6 17 143-159 41-57 (98)
108 KOG3763 mRNA export factor TAP 59.7 5.4 0.00012 34.6 1.5 35 24-58 218-254 (585)
109 PF02009 Rifin_STEVOR: Rifin/s 58.5 6.5 0.00014 31.6 1.7 8 161-168 274-281 (299)
110 PF13908 Shisa: Wnt and FGF in 53.8 17 0.00037 26.7 3.2 10 147-156 80-89 (179)
111 PF02404 SCF: Stem cell factor 53.7 4.3 9.3E-05 31.6 0.0 31 141-171 212-242 (273)
112 PRK01844 hypothetical protein; 53.7 11 0.00024 23.3 1.8 16 152-167 11-26 (72)
113 COG3105 Uncharacterized protei 53.1 26 0.00057 24.3 3.7 28 143-170 7-34 (138)
114 PF02480 Herpes_gE: Alphaherpe 53.1 4.5 9.7E-05 34.3 0.0 9 167-175 378-386 (439)
115 PF15179 Myc_target_1: Myc tar 51.8 14 0.00031 27.3 2.4 10 151-160 29-38 (197)
116 PF06305 DUF1049: Protein of u 51.4 25 0.00055 21.0 3.2 14 152-165 25-38 (68)
117 PRK10747 putative protoheme IX 50.7 10 0.00023 31.5 1.8 20 173-192 64-83 (398)
118 PF11980 DUF3481: Domain of un 49.7 15 0.00032 23.5 1.9 30 144-173 16-45 (87)
119 TIGR00540 hemY_coli hemY prote 48.0 12 0.00026 31.3 1.8 21 172-192 63-83 (409)
120 PF02937 COX6C: Cytochrome c o 47.4 24 0.00052 22.0 2.6 12 168-179 42-55 (73)
121 KOG4308 LRR-containing protein 47.3 1.2 2.6E-05 38.2 -4.3 35 3-37 90-128 (478)
122 COG3763 Uncharacterized protei 47.2 16 0.00035 22.4 1.7 19 149-167 8-26 (71)
123 PF05568 ASFV_J13L: African sw 47.1 22 0.00047 25.3 2.6 14 160-173 46-59 (189)
124 PF08374 Protocadherin: Protoc 47.1 20 0.00044 27.2 2.7 22 144-165 39-60 (221)
125 PF11240 DUF3042: Protein of u 46.9 34 0.00073 20.0 3.0 12 150-161 7-18 (54)
126 PF14610 DUF4448: Protein of u 46.7 10 0.00022 28.2 1.0 20 146-165 159-178 (189)
127 PRK00523 hypothetical protein; 46.4 22 0.00048 22.0 2.3 16 152-167 12-27 (72)
128 PF14991 MLANA: Protein melan- 45.4 5.9 0.00013 26.8 -0.4 15 165-179 44-58 (118)
129 PF12301 CD99L2: CD99 antigen 44.7 15 0.00033 26.9 1.6 29 149-177 118-147 (169)
130 PF02208 Sorb: Sorbin homologo 44.4 11 0.00024 21.0 0.7 15 168-182 23-37 (47)
131 KOG1947 Leucine rich repeat pr 44.1 13 0.00029 31.0 1.5 66 18-83 208-280 (482)
132 smart00459 Sorb Sorbin homolog 43.1 12 0.00026 21.3 0.7 14 169-182 27-40 (50)
133 PHA03164 hypothetical protein; 42.6 21 0.00046 22.3 1.8 22 146-167 61-82 (88)
134 PF05393 Hum_adeno_E3A: Human 42.1 22 0.00047 22.9 1.8 16 152-167 40-55 (94)
135 PF10669 Phage_Gp23: Protein g 41.1 57 0.0012 21.4 3.7 14 181-194 51-64 (121)
136 PTZ00370 STEVOR; Provisional 39.8 38 0.00082 27.0 3.2 12 172-183 276-287 (296)
137 PTZ00046 rifin; Provisional 39.7 31 0.00067 28.4 2.8 13 160-172 332-344 (358)
138 PF12732 YtxH: YtxH-like prote 39.3 45 0.00098 20.5 3.0 19 149-167 3-21 (74)
139 PF02064 MAS20: MAS20 protein 39.3 9.9 0.00021 26.2 0.0 20 153-172 3-22 (121)
140 TIGR00847 ccoS cytochrome oxid 39.3 32 0.00069 19.8 2.1 22 153-174 10-31 (51)
141 TIGR01477 RIFIN variant surfac 39.1 32 0.00069 28.3 2.8 13 160-172 327-339 (353)
142 PF00558 Vpu: Vpu protein; In 39.1 33 0.00073 21.8 2.3 6 161-166 18-23 (81)
143 PF03302 VSP: Giardia variant- 38.8 27 0.00059 29.3 2.5 18 149-166 372-389 (397)
144 PF04995 CcmD: Heme exporter p 38.8 56 0.0012 18.1 3.1 7 150-156 10-16 (46)
145 PF13703 PepSY_TM_2: PepSY-ass 38.6 21 0.00045 22.8 1.4 7 160-166 32-38 (88)
146 smart00367 LRR_CC Leucine-rich 37.3 27 0.00059 16.4 1.4 12 48-59 2-13 (26)
147 PRK10132 hypothetical protein; 37.3 35 0.00075 23.0 2.4 12 155-166 94-105 (108)
148 PF03597 CcoS: Cytochrome oxid 37.1 36 0.00078 19.0 2.0 22 153-174 9-30 (45)
149 PF13807 GNVR: G-rich domain o 35.9 36 0.00077 21.4 2.2 18 145-162 60-77 (82)
150 COG3197 FixS Uncharacterized p 34.6 38 0.00081 20.0 1.9 25 152-176 9-33 (58)
151 PF05808 Podoplanin: Podoplani 34.5 13 0.00028 26.9 0.0 14 146-159 129-142 (162)
152 PF10725 DUF2517: Protein of u 34.0 35 0.00077 20.3 1.7 31 152-182 15-45 (63)
153 PF12877 DUF3827: Domain of un 33.5 54 0.0012 29.3 3.5 32 143-174 269-300 (684)
154 PF05283 MGC-24: Multi-glycosy 32.8 95 0.0021 23.2 4.3 12 139-150 155-166 (186)
155 cd00927 Cyt_c_Oxidase_VIc Cyto 32.7 67 0.0014 19.8 2.9 6 174-179 48-53 (70)
156 PF11353 DUF3153: Protein of u 31.8 38 0.00082 25.6 2.1 25 144-168 180-204 (209)
157 PF15145 DUF4577: Domain of un 30.5 1.4E+02 0.003 20.3 4.3 18 147-164 63-80 (128)
158 PRK10404 hypothetical protein; 30.4 41 0.00089 22.3 1.8 9 157-165 90-98 (101)
159 TIGR01478 STEVOR variant surfa 30.0 48 0.001 26.4 2.4 7 173-179 281-287 (295)
160 COG4575 ElaB Uncharacterized c 29.3 46 0.00099 22.2 1.9 17 144-160 84-100 (104)
161 PF15179 Myc_target_1: Myc tar 28.9 47 0.001 24.6 2.1 25 142-166 16-40 (197)
162 KOG1830 Wiskott Aldrich syndro 28.9 36 0.00079 28.7 1.6 25 171-195 159-183 (518)
163 PF15176 LRR19-TM: Leucine-ric 27.9 1.1E+02 0.0024 20.3 3.4 12 143-155 16-27 (102)
164 PF04418 DUF543: Domain of unk 27.8 60 0.0013 20.3 2.1 21 151-173 33-53 (75)
165 PHA03265 envelope glycoprotein 27.4 49 0.0011 27.2 2.1 34 144-177 347-380 (402)
166 PHA03237 envelope glycoprotein 26.8 97 0.0021 26.3 3.8 6 174-179 361-366 (424)
167 PF02009 Rifin_STEVOR: Rifin/s 26.5 52 0.0011 26.5 2.1 26 152-177 262-287 (299)
168 PF05808 Podoplanin: Podoplani 26.4 22 0.00047 25.8 0.0 24 144-167 131-154 (162)
169 PF05795 Plasmodium_Vir: Plasm 25.9 94 0.002 24.9 3.6 10 157-166 292-301 (354)
170 PF06365 CD34_antigen: CD34/Po 25.5 54 0.0012 24.8 1.9 18 156-173 113-130 (202)
171 PF15069 FAM163: FAM163 family 24.0 42 0.00092 23.8 1.0 18 149-166 9-26 (143)
172 PF12768 Rax2: Cortical protei 23.9 49 0.0011 26.4 1.5 21 146-166 231-251 (281)
173 PF08566 Pam17: Mitochondrial 23.8 96 0.0021 22.8 2.9 32 151-182 88-119 (173)
174 PF10144 SMP_2: Bacterial viru 23.1 72 0.0016 24.3 2.2 24 152-175 170-193 (210)
175 PF14143 YrhC: YrhC-like prote 22.8 59 0.0013 20.2 1.4 25 153-177 44-68 (72)
176 PF02936 COX4: Cytochrome c ox 22.3 1.5E+02 0.0033 21.0 3.6 17 176-192 105-121 (142)
177 PF05957 DUF883: Bacterial pro 21.5 73 0.0016 20.5 1.8 9 157-165 83-91 (94)
178 PF07423 DUF1510: Protein of u 21.0 78 0.0017 24.2 2.0 17 150-166 19-35 (217)
179 PF11286 DUF3087: Protein of u 20.9 1.4E+02 0.003 21.9 3.2 8 169-176 71-78 (165)
180 PF10661 EssA: WXG100 protein 20.4 82 0.0018 22.4 1.9 11 152-162 125-135 (145)
No 1
>PLN03150 hypothetical protein; Provisional
Probab=99.79 E-value=5.5e-19 Score=153.14 Aligned_cols=116 Identities=37% Similarity=0.597 Sum_probs=102.4
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
++.|+|++|.+.|.+|..++.+++|+.|+|++|.+.|.+|..++.+++|+.|+|++|.++|.+|..+..+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCccCCCCCCc--cCCCCcccccCCccccCCCCCCCC
Q 035751 82 NRLWGRIPRGNQ--FNTFENDSYIGNIHLCGEPLTVTC 117 (195)
Q Consensus 82 N~l~g~~p~~~~--~~~~~~~~~~~n~~l~~~~~~~~c 117 (195)
|.++|.+|.... ...+..+.+.+|..+|+.|....|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C 537 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC 537 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCCCCCCC
Confidence 999999997532 123345667888888887654445
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.77 E-value=1.8e-18 Score=156.98 Aligned_cols=112 Identities=44% Similarity=0.695 Sum_probs=97.5
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|+.|+|++|.+.+.+|..+..+++|++|+|++|.+++.+|..|..+++|+.|++++|.+++.+|..+..+++|+.++++
T Consensus 500 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls 579 (968)
T PLN00113 500 ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNIS 579 (968)
T ss_pred ccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEecc
Confidence 36778888888888888888888889999999999888888888889999999999999988889888888899999999
Q ss_pred cCcCccCCCCCCccCCCCcccccCCccccCCC
Q 035751 81 YNRLWGRIPRGNQFNTFENDSYIGNIHLCGEP 112 (195)
Q Consensus 81 ~N~l~g~~p~~~~~~~~~~~~~~~n~~l~~~~ 112 (195)
+|+++|.+|....+..+....+.||+.+||.+
T Consensus 580 ~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 580 HNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred CCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 99999999988888888888888998888754
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.56 E-value=9.2e-15 Score=132.94 Aligned_cols=106 Identities=37% Similarity=0.577 Sum_probs=93.2
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|+.|++++|.+++.+|..+..+++|+.|+|++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.|+++
T Consensus 476 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 555 (968)
T PLN00113 476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS 555 (968)
T ss_pred cceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECC
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCccCCCCCC-ccCCCCcccccCCc
Q 035751 81 YNRLWGRIPRGN-QFNTFENDSYIGNI 106 (195)
Q Consensus 81 ~N~l~g~~p~~~-~~~~~~~~~~~~n~ 106 (195)
+|.++|.+|... .+..+..+.+.+|.
T Consensus 556 ~N~l~~~~p~~l~~l~~L~~l~ls~N~ 582 (968)
T PLN00113 556 QNQLSGEIPKNLGNVESLVQVNISHNH 582 (968)
T ss_pred CCcccccCChhHhcCcccCEEeccCCc
Confidence 999999998742 23345555555554
No 4
>PLN03150 hypothetical protein; Provisional
Probab=99.33 E-value=8.4e-12 Score=108.64 Aligned_cols=89 Identities=39% Similarity=0.554 Sum_probs=80.8
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcC-CCccEEEc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSV-TTLALLNL 79 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l-~~L~~L~l 79 (195)
+|+.|+|++|.+.|.+|..++.+++|+.|+|++|.++|.+|..++.+++|++|+|++|.++|.+|..+... ..+..+++
T Consensus 443 ~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~ 522 (623)
T PLN03150 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNF 522 (623)
T ss_pred CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEe
Confidence 47899999999999999999999999999999999999999999999999999999999999999988763 46778999
Q ss_pred ccCcCccCCC
Q 035751 80 SYNRLWGRIP 89 (195)
Q Consensus 80 ~~N~l~g~~p 89 (195)
.+|...+..|
T Consensus 523 ~~N~~lc~~p 532 (623)
T PLN03150 523 TDNAGLCGIP 532 (623)
T ss_pred cCCccccCCC
Confidence 9998765444
No 5
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.21 E-value=8e-12 Score=76.06 Aligned_cols=58 Identities=38% Similarity=0.547 Sum_probs=32.2
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNK 59 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~ 59 (195)
|++|++++|.++...+..|.++++|++|++++|.++...|..|..+++|++|++++|+
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 5555555555554444455555555555555555554444555555555555555554
No 6
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.17 E-value=2.2e-11 Score=89.33 Aligned_cols=103 Identities=28% Similarity=0.477 Sum_probs=37.6
Q ss_pred ccEEEecCCcCCCCcchhhc-CCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhh-hcCCCccEEEc
Q 035751 2 FRATDLSSNRFCGEIPKVLG-NFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQL-LSVTTLALLNL 79 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~l~~L~~L~l 79 (195)
+++|+|++|.|+ .+. .++ .+.+|+.|||++|.|+ .++ .+..++.|++|++++|.|+ .+...+ ..+++|+.|++
T Consensus 21 ~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 21 LRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-
T ss_pred cccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEEC
Confidence 678999999998 343 465 5889999999999999 444 5788999999999999999 455445 46899999999
Q ss_pred ccCcCccCCCCCCccCCCCcccccCCccccCCCC
Q 035751 80 SYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPL 113 (195)
Q Consensus 80 ~~N~l~g~~p~~~~~~~~~~~~~~~n~~l~~~~~ 113 (195)
++|++.. +.+ +..+..+..+....++|||.
T Consensus 96 ~~N~I~~-l~~---l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 96 SNNKISD-LNE---LEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp TTS---S-CCC---CGGGGG-TT--EEE-TT-GG
T ss_pred cCCcCCC-hHH---hHHHHcCCCcceeeccCCcc
Confidence 9999972 222 33344444444456666665
No 7
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.17 E-value=1.5e-11 Score=74.88 Aligned_cols=61 Identities=43% Similarity=0.555 Sum_probs=56.0
Q ss_pred CCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcccCcC
Q 035751 24 KSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRL 84 (195)
Q Consensus 24 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l 84 (195)
++|++|++++|.++...+..|..+++|++|++++|.++...|..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4789999999999967668899999999999999999977778999999999999999975
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.16 E-value=1.9e-12 Score=93.50 Aligned_cols=80 Identities=33% Similarity=0.589 Sum_probs=48.9
Q ss_pred cEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcccC
Q 035751 3 RATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYN 82 (195)
Q Consensus 3 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N 82 (195)
+.|-||+|.++ .+|+.+..|.+|+.|++.+|++. .+|.+++.++.|+.|+++-|++. ..|..|+.++.|+.||+.+|
T Consensus 36 TrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltyn 112 (264)
T KOG0617|consen 36 TRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYN 112 (264)
T ss_pred hhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcccc
Confidence 34556666666 55555666666666666666666 55666666666666666666665 55666666666666666665
Q ss_pred cCc
Q 035751 83 RLW 85 (195)
Q Consensus 83 ~l~ 85 (195)
++.
T Consensus 113 nl~ 115 (264)
T KOG0617|consen 113 NLN 115 (264)
T ss_pred ccc
Confidence 554
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.13 E-value=2.6e-12 Score=107.56 Aligned_cols=90 Identities=28% Similarity=0.247 Sum_probs=65.1
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|+.|+||+|.|..+.++.+...++|++|||++|+|+...+..|..|..|+.|+|++|++...-...|..+++|+.|||+
T Consensus 294 ~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr 373 (873)
T KOG4194|consen 294 SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLR 373 (873)
T ss_pred hhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCc
Confidence 35667777777777777777777777777777777776666667777777777777777765555667777777777777
Q ss_pred cCcCccCCCC
Q 035751 81 YNRLWGRIPR 90 (195)
Q Consensus 81 ~N~l~g~~p~ 90 (195)
+|.+++.|.+
T Consensus 374 ~N~ls~~IED 383 (873)
T KOG4194|consen 374 SNELSWCIED 383 (873)
T ss_pred CCeEEEEEec
Confidence 7777766654
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.11 E-value=5.3e-12 Score=91.21 Aligned_cols=103 Identities=29% Similarity=0.441 Sum_probs=87.6
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCC-CCchhhhcCCCccEEEc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEG-RIPKQLLSVTTLALLNL 79 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~-~~p~~~~~l~~L~~L~l 79 (195)
+|+.|++++|+|. .+|..++.|++|+.|+++.|++. .+|..|+.++.|+.||+..|++.. .+|..|..+..|+.|++
T Consensus 57 nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl 134 (264)
T KOG0617|consen 57 NLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYL 134 (264)
T ss_pred hhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHh
Confidence 5788999999999 88999999999999999999999 899999999999999999999864 48999999999999999
Q ss_pred ccCcCccCCCCCCccCCCCcccccCC
Q 035751 80 SYNRLWGRIPRGNQFNTFENDSYIGN 105 (195)
Q Consensus 80 ~~N~l~g~~p~~~~~~~~~~~~~~~n 105 (195)
++|.+.-..|+...+..++.+....|
T Consensus 135 ~dndfe~lp~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 135 GDNDFEILPPDVGKLTNLQILSLRDN 160 (264)
T ss_pred cCCCcccCChhhhhhcceeEEeeccC
Confidence 99999844444455555555544444
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.06 E-value=1.3e-11 Score=103.54 Aligned_cols=89 Identities=33% Similarity=0.375 Sum_probs=63.6
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCch---hhhcCCCccEE
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPK---QLLSVTTLALL 77 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~---~~~~l~~L~~L 77 (195)
+|++|||++|+|+...+++|..|..|++|+|++|+++...-..|..+.+|+.|||++|.+++.+.+ .|..+++|+.|
T Consensus 318 kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL 397 (873)
T KOG4194|consen 318 KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL 397 (873)
T ss_pred cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence 477888888888877778888888888888888887766666677777777777777777665543 35556666677
Q ss_pred EcccCcCccCCCC
Q 035751 78 NLSYNRLWGRIPR 90 (195)
Q Consensus 78 ~l~~N~l~g~~p~ 90 (195)
++.+|++. .||.
T Consensus 398 ~l~gNqlk-~I~k 409 (873)
T KOG4194|consen 398 RLTGNQLK-SIPK 409 (873)
T ss_pred eecCceee-ecch
Confidence 77776665 4443
No 12
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.97 E-value=6.8e-10 Score=81.54 Aligned_cols=82 Identities=30% Similarity=0.387 Sum_probs=40.6
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCcccc-CCCCCCcEEeCCCCcCCCC-CchhhhcCCCccEEE
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSF-DNMTALESLDLSFNKLEGR-IPKQLLSVTTLALLN 78 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~L~ 78 (195)
+|+.|||++|.|+. ++ .+..++.|++|++++|+|+ .++..+ ..+++|+.|++++|+|... .-..+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~ 119 (175)
T PF14580_consen 43 KLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLS 119 (175)
T ss_dssp T--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE
T ss_pred CCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceee
Confidence 47899999999994 43 4888999999999999999 454444 4689999999999999743 224677899999999
Q ss_pred cccCcCc
Q 035751 79 LSYNRLW 85 (195)
Q Consensus 79 l~~N~l~ 85 (195)
+.+|+++
T Consensus 120 L~~NPv~ 126 (175)
T PF14580_consen 120 LEGNPVC 126 (175)
T ss_dssp -TT-GGG
T ss_pred ccCCccc
Confidence 9999997
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.89 E-value=7.6e-10 Score=89.05 Aligned_cols=78 Identities=28% Similarity=0.281 Sum_probs=57.7
Q ss_pred CCCCcc-hhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcccCcCccCCC
Q 035751 12 FCGEIP-KVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRLWGRIP 89 (195)
Q Consensus 12 l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p 89 (195)
..++.| ..|..|++|++|+|++|.+++.-+.+|..+..++.|.|..|+|.......|.++..|++|+|.+|+|+..-|
T Consensus 261 ~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~ 339 (498)
T KOG4237|consen 261 PDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP 339 (498)
T ss_pred cCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEec
Confidence 333444 447778888888888888887777778888888888888888875556677778888888888888875444
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.88 E-value=1.4e-09 Score=87.54 Aligned_cols=85 Identities=24% Similarity=0.256 Sum_probs=80.5
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|+.|+|++|.|+++-+.+|.++..+++|.|..|+|...-...|.++..|++|+|.+|+|+...|..|..+.+|..|++-
T Consensus 275 ~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 275 NLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLL 354 (498)
T ss_pred cceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehc
Confidence 48899999999999999999999999999999999987777889999999999999999998899999999999999999
Q ss_pred cCcCc
Q 035751 81 YNRLW 85 (195)
Q Consensus 81 ~N~l~ 85 (195)
.|++.
T Consensus 355 ~Np~~ 359 (498)
T KOG4237|consen 355 SNPFN 359 (498)
T ss_pred cCccc
Confidence 99885
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.86 E-value=4.9e-10 Score=90.47 Aligned_cols=102 Identities=27% Similarity=0.366 Sum_probs=52.9
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
|..|+|++|-+. .+|.+++.+..|++||++.|+|. .+|.....+..|+.+-.++|++....|+.+..+.+|.+||+.+
T Consensus 437 Lt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n 514 (565)
T KOG0472|consen 437 LTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN 514 (565)
T ss_pred ceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC
Confidence 344555555554 45555555555555555555554 4444444444444444444444433344466677777778877
Q ss_pred CcCccCCCCCCccCCCCcccccCC
Q 035751 82 NRLWGRIPRGNQFNTFENDSYIGN 105 (195)
Q Consensus 82 N~l~g~~p~~~~~~~~~~~~~~~n 105 (195)
|.+....|....+.++.++...||
T Consensus 515 Ndlq~IPp~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 515 NDLQQIPPILGNMTNLRHLELDGN 538 (565)
T ss_pred CchhhCChhhccccceeEEEecCC
Confidence 777733333334444444444433
No 16
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.86 E-value=1.8e-10 Score=92.92 Aligned_cols=84 Identities=24% Similarity=0.307 Sum_probs=55.9
Q ss_pred hcCCCCCcEEEccCCCCCCCCcccc-CCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcccCcCccCCCCCCccCCCC
Q 035751 20 LGNFKSLKVLNLSHNSLTGNIPVSF-DNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFE 98 (195)
Q Consensus 20 ~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~ 98 (195)
|+++..|.+|+++.|.|. .+|... .++++|..||+..|+++ +.|+.+.-+.+|..||+++|.+++..+....+ .+.
T Consensus 224 f~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~ 300 (565)
T KOG0472|consen 224 FPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLK 300 (565)
T ss_pred CCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eee
Confidence 444444444444444444 344443 37888899999999998 88999999999999999999998655544333 444
Q ss_pred cccccCCc
Q 035751 99 NDSYIGNI 106 (195)
Q Consensus 99 ~~~~~~n~ 106 (195)
.+...|||
T Consensus 301 ~L~leGNP 308 (565)
T KOG0472|consen 301 FLALEGNP 308 (565)
T ss_pred ehhhcCCc
Confidence 44445554
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.84 E-value=5e-10 Score=98.07 Aligned_cols=104 Identities=29% Similarity=0.372 Sum_probs=76.2
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
.|+.|+|++|++.......+.++..|+.|+||+|+++ .+|..+..++.|++|...+|++. .+| .+..++.|+.+|++
T Consensus 384 hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS 460 (1081)
T KOG0618|consen 384 HLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLS 460 (1081)
T ss_pred ceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecc
Confidence 3678888888887333355677888888888888888 77788888888888888888887 677 77888899999999
Q ss_pred cCcCcc-CCCCCCccCCCCcccccCCcc
Q 035751 81 YNRLWG-RIPRGNQFNTFENDSYIGNIH 107 (195)
Q Consensus 81 ~N~l~g-~~p~~~~~~~~~~~~~~~n~~ 107 (195)
.|.++- .+|....-..++.+.+.||..
T Consensus 461 ~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 461 CNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred cchhhhhhhhhhCCCcccceeeccCCcc
Confidence 998872 333332224566666666664
No 18
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.81 E-value=9.9e-10 Score=93.32 Aligned_cols=82 Identities=40% Similarity=0.427 Sum_probs=67.6
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
|+.||||+|.+. .+|..+..-+++-.|+||+|+|..+..+-|.+|+.|-+||||+|++. .+|..+..+..|++|+|++
T Consensus 105 Lt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~ 182 (1255)
T KOG0444|consen 105 LTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSN 182 (1255)
T ss_pred ceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCC
Confidence 677888888888 78888888888888888888888443345778888888899999887 7788888888888899988
Q ss_pred CcCc
Q 035751 82 NRLW 85 (195)
Q Consensus 82 N~l~ 85 (195)
|++.
T Consensus 183 NPL~ 186 (1255)
T KOG0444|consen 183 NPLN 186 (1255)
T ss_pred Chhh
Confidence 8874
No 19
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.71 E-value=3e-09 Score=83.30 Aligned_cols=80 Identities=26% Similarity=0.308 Sum_probs=62.7
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
|++||||+|.|+ .+.++..-++.++.|++|+|.|. .+. .++.+++|+.||||+|.++ .+.+.-..+-+.++|.|+.
T Consensus 286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhh
Confidence 678999999998 77888888899999999999998 333 3888999999999999887 4444445566666666666
Q ss_pred CcCc
Q 035751 82 NRLW 85 (195)
Q Consensus 82 N~l~ 85 (195)
|.+.
T Consensus 362 N~iE 365 (490)
T KOG1259|consen 362 NKIE 365 (490)
T ss_pred hhHh
Confidence 6654
No 20
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.69 E-value=3.2e-09 Score=90.34 Aligned_cols=102 Identities=29% Similarity=0.465 Sum_probs=70.5
Q ss_pred ccEEEecCCcCC-CCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchh-hhcCCCccEEEc
Q 035751 2 FRATDLSSNRFC-GEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQ-LLSVTTLALLNL 79 (195)
Q Consensus 2 L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~l~~L~~L~l 79 (195)
|+.+++.+|++. .-+|..+..|..|+.||||+|++. ..|..+..-.++..|+||+|+|. .+|.. +.++..|-+|||
T Consensus 80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDL 157 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDL 157 (1255)
T ss_pred hHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhcc
Confidence 455666666664 246777778888888888888888 77888888888888888888887 55654 457788888888
Q ss_pred ccCcCccCCCCCCccCCCCcccccCC
Q 035751 80 SYNRLWGRIPRGNQFNTFENDSYIGN 105 (195)
Q Consensus 80 ~~N~l~g~~p~~~~~~~~~~~~~~~n 105 (195)
++|++....|..-.+..++.+.+.+|
T Consensus 158 S~NrLe~LPPQ~RRL~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 158 SNNRLEMLPPQIRRLSMLQTLKLSNN 183 (1255)
T ss_pred ccchhhhcCHHHHHHhhhhhhhcCCC
Confidence 88888754444333333444444443
No 21
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.64 E-value=3e-09 Score=74.23 Aligned_cols=86 Identities=30% Similarity=0.470 Sum_probs=53.9
Q ss_pred ccEEEecCCcCCCCcchhhcC-CCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 2 FRATDLSSNRFCGEIPKVLGN-FKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
|+..+|++|.+. .+|+.|.. ++.+++|+|++|.|+ .+|..+..++.|+.|+++.|.+. ..|..+..+.++..|+..
T Consensus 55 l~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 55 LTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred EEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence 345566677666 44544443 346666777777776 56666777777777777777766 556666666666666666
Q ss_pred cCcCccCCCCC
Q 035751 81 YNRLWGRIPRG 91 (195)
Q Consensus 81 ~N~l~g~~p~~ 91 (195)
+|.+. ++|..
T Consensus 132 ~na~~-eid~d 141 (177)
T KOG4579|consen 132 ENARA-EIDVD 141 (177)
T ss_pred CCccc-cCcHH
Confidence 66665 55543
No 22
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.63 E-value=1.6e-07 Score=87.42 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=77.1
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|+.|+|++|.+. .++..+..+++|+.|+|+++.....+|. +..+++|++|++++|.....+|..+..+++|+.|+++
T Consensus 612 ~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 612 NLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred CCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 4677888888887 5677778888888899887764446664 7788889999998876656788888888999999998
Q ss_pred cCcCccCCCCCCccCCCCcccccCC
Q 035751 81 YNRLWGRIPRGNQFNTFENDSYIGN 105 (195)
Q Consensus 81 ~N~l~g~~p~~~~~~~~~~~~~~~n 105 (195)
+|...+.+|....+..+..+.+.++
T Consensus 690 ~c~~L~~Lp~~i~l~sL~~L~Lsgc 714 (1153)
T PLN03210 690 RCENLEILPTGINLKSLYRLNLSGC 714 (1153)
T ss_pred CCCCcCccCCcCCCCCCCEEeCCCC
Confidence 8655557776655555555555444
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.59 E-value=5.5e-08 Score=86.11 Aligned_cols=39 Identities=33% Similarity=0.416 Sum_probs=19.4
Q ss_pred CcEEeCCCCcCCCCCchhhhcCCCccEEEcccCcCccCCC
Q 035751 50 LESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRLWGRIP 89 (195)
Q Consensus 50 L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p 89 (195)
|+.|++++|+|+ .+|..+..+++|+.|++++|++++.+|
T Consensus 424 L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 424 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred hhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence 344444444444 345555555555555555555554433
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.57 E-value=4.4e-09 Score=92.34 Aligned_cols=94 Identities=32% Similarity=0.395 Sum_probs=81.3
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
|+.|.+.+|.++...-+.+.++.+|+.|+|++|+++......+.++..|+.|+||+|.++ .+|..+..+..|++|...+
T Consensus 361 Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahs 439 (1081)
T KOG0618|consen 361 LQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHS 439 (1081)
T ss_pred HHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcC
Confidence 567889999999888888999999999999999999444455889999999999999999 8899999999999999999
Q ss_pred CcCccCCCCCCccCCC
Q 035751 82 NRLWGRIPRGNQFNTF 97 (195)
Q Consensus 82 N~l~g~~p~~~~~~~~ 97 (195)
|.+. ..|...++..+
T Consensus 440 N~l~-~fPe~~~l~qL 454 (1081)
T KOG0618|consen 440 NQLL-SFPELAQLPQL 454 (1081)
T ss_pred Ccee-echhhhhcCcc
Confidence 9998 77765444333
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.51 E-value=1.3e-08 Score=85.52 Aligned_cols=84 Identities=27% Similarity=0.529 Sum_probs=58.2
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
|+.|-+++|+++ .+|+.++.+..|..||.+.|.+. .+|..++.+.+|+.|.+..|.+. .+|..+..+ .|..||++.
T Consensus 145 Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfSc 220 (722)
T KOG0532|consen 145 LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSC 220 (722)
T ss_pred ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeeccc
Confidence 566777788877 77777777778888888888877 66777777777766666666665 455555533 366677777
Q ss_pred CcCccCCCC
Q 035751 82 NRLWGRIPR 90 (195)
Q Consensus 82 N~l~g~~p~ 90 (195)
|+++ .+|.
T Consensus 221 Nkis-~iPv 228 (722)
T KOG0532|consen 221 NKIS-YLPV 228 (722)
T ss_pred Ccee-ecch
Confidence 7776 5554
No 26
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.47 E-value=2.5e-07 Score=52.20 Aligned_cols=35 Identities=37% Similarity=0.655 Sum_probs=16.1
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCC
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLT 37 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 37 (195)
|++|++++|+|+ .+|+.+++|++|+.|++++|.++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 445555555554 33444445555555555555444
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.46 E-value=6.5e-07 Score=79.47 Aligned_cols=77 Identities=31% Similarity=0.454 Sum_probs=37.6
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCC-------------------CCCCcEEeCCCCcCCC
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDN-------------------MTALESLDLSFNKLEG 62 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-------------------l~~L~~L~l~~N~l~~ 62 (195)
|+.|+|++|.|+ .+|..+. .+|++|++++|.++ .+|..+.. ..+|+.|++++|.++
T Consensus 201 L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N~L~- 275 (754)
T PRK15370 201 ITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLPDTIQEMELSINRITELPERLPSALQSLDLFHNKIS- 275 (754)
T ss_pred CcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhhccccEEECcCCccCcCChhHhCCCCEEECcCCccC-
Confidence 455666666666 3444332 35555555555555 33433221 124555555555554
Q ss_pred CCchhhhcCCCccEEEcccCcCc
Q 035751 63 RIPKQLLSVTTLALLNLSYNRLW 85 (195)
Q Consensus 63 ~~p~~~~~l~~L~~L~l~~N~l~ 85 (195)
.+|..+. .+|+.|++++|.++
T Consensus 276 ~LP~~l~--~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 276 CLPENLP--EELRYLSVYDNSIR 296 (754)
T ss_pred ccccccC--CCCcEEECCCCccc
Confidence 3444332 34555555555555
No 28
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.46 E-value=2e-07 Score=52.64 Aligned_cols=36 Identities=39% Similarity=0.663 Sum_probs=20.4
Q ss_pred CCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCC
Q 035751 25 SLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLE 61 (195)
Q Consensus 25 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 61 (195)
+|++|++++|.|+ .+|..++.|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4566666666666 44545566666666666666655
No 29
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.45 E-value=9.2e-09 Score=88.60 Aligned_cols=80 Identities=31% Similarity=0.338 Sum_probs=60.8
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
|+.|||++|++... . .+..|+.|+.|||++|.+. .+|..-..-..|+.|.+++|.++.. ..+.++.+|+.||+++
T Consensus 189 le~LnLshNk~~~v-~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL--~gie~LksL~~LDlsy 263 (1096)
T KOG1859|consen 189 LESLNLSHNKFTKV-D-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTL--RGIENLKSLYGLDLSY 263 (1096)
T ss_pred hhhhccchhhhhhh-H-HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhh--hhHHhhhhhhccchhH
Confidence 56788999988843 3 6788899999999999988 5554322223488899999988732 4578899999999999
Q ss_pred CcCcc
Q 035751 82 NRLWG 86 (195)
Q Consensus 82 N~l~g 86 (195)
|-+.+
T Consensus 264 Nll~~ 268 (1096)
T KOG1859|consen 264 NLLSE 268 (1096)
T ss_pred hhhhc
Confidence 98873
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.44 E-value=3.8e-08 Score=77.18 Aligned_cols=79 Identities=29% Similarity=0.325 Sum_probs=67.3
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
++.|++|+|.|. .+. .+..|.+|+.||||+|.++ .+-..-..+.++++|.|+.|.|.. -+.+..+-+|..||+.+
T Consensus 309 ir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~ 383 (490)
T KOG1259|consen 309 LRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSS 383 (490)
T ss_pred eeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccc
Confidence 678999999998 443 3889999999999999998 666666778999999999999862 35678889999999999
Q ss_pred CcCc
Q 035751 82 NRLW 85 (195)
Q Consensus 82 N~l~ 85 (195)
|+|.
T Consensus 384 N~Ie 387 (490)
T KOG1259|consen 384 NQIE 387 (490)
T ss_pred cchh
Confidence 9996
No 31
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.42 E-value=3.5e-07 Score=81.15 Aligned_cols=33 Identities=36% Similarity=0.339 Sum_probs=17.6
Q ss_pred CCcEEeCCCCcCCCCCchhhhcCCCccEEEcccCcCc
Q 035751 49 ALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRLW 85 (195)
Q Consensus 49 ~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 85 (195)
+|+.|++++|.|+ .+|.. .++|+.|++++|.++
T Consensus 383 ~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls 415 (788)
T PRK15387 383 GLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT 415 (788)
T ss_pred ccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC
Confidence 4556666666665 33432 234555666666555
No 32
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.41 E-value=5.7e-07 Score=79.81 Aligned_cols=79 Identities=29% Similarity=0.490 Sum_probs=58.4
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
|+.|+|++|.+. .+|..+. .+|+.|++++|.++ .+|..+. ++|+.|++++|.++ .+|..+. ++|+.|++++
T Consensus 243 L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~ 313 (754)
T PRK15370 243 IQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQS 313 (754)
T ss_pred ccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcC
Confidence 455666666665 4555443 47899999999998 5676654 58999999999999 5666543 5789999999
Q ss_pred CcCccCCCC
Q 035751 82 NRLWGRIPR 90 (195)
Q Consensus 82 N~l~g~~p~ 90 (195)
|.++ .+|.
T Consensus 314 N~Lt-~LP~ 321 (754)
T PRK15370 314 NSLT-ALPE 321 (754)
T ss_pred Cccc-cCCc
Confidence 9998 4553
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.37 E-value=2.1e-07 Score=74.42 Aligned_cols=84 Identities=24% Similarity=0.340 Sum_probs=56.9
Q ss_pred ccEEEecCCcCCC----CcchhhcCC-CCCcEEEccCCCCCCC----CccccCCCCCCcEEeCCCCcCCCC----Cchhh
Q 035751 2 FRATDLSSNRFCG----EIPKVLGNF-KSLKVLNLSHNSLTGN----IPVSFDNMTALESLDLSFNKLEGR----IPKQL 68 (195)
Q Consensus 2 L~~L~Ls~N~l~~----~~p~~~~~l-~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~----~p~~~ 68 (195)
|++|++++|.+++ .+...+..+ ++|+.|++++|.+++. ++..+..++.|++|++++|.+++. ++..+
T Consensus 110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l 189 (319)
T cd00116 110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGL 189 (319)
T ss_pred ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHH
Confidence 7788888888773 233445566 7888888888887742 233456667788888888887742 23334
Q ss_pred hcCCCccEEEcccCcCc
Q 035751 69 LSVTTLALLNLSYNRLW 85 (195)
Q Consensus 69 ~~l~~L~~L~l~~N~l~ 85 (195)
..+++|+.|++++|.++
T Consensus 190 ~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 190 KANCNLEVLDLNNNGLT 206 (319)
T ss_pred HhCCCCCEEeccCCccC
Confidence 45567888888888775
No 34
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.33 E-value=2.1e-06 Score=80.10 Aligned_cols=79 Identities=25% Similarity=0.338 Sum_probs=53.8
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCC---------------------Cc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSF---------------------NK 59 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~---------------------N~ 59 (195)
+|+.|+|++|...+.+|..++++++|+.|++++|..-+.+|..+ .+++|+.|++++ |.
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~ 857 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTG 857 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCC
Confidence 47788999988777899999999999999999875333666544 455555555554 44
Q ss_pred CCCCCchhhhcCCCccEEEccc
Q 035751 60 LEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 60 l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
++ .+|..+..+++|+.|++++
T Consensus 858 i~-~iP~si~~l~~L~~L~L~~ 878 (1153)
T PLN03210 858 IE-EVPWWIEKFSNLSFLDMNG 878 (1153)
T ss_pred Cc-cChHHHhcCCCCCEEECCC
Confidence 44 4555555566666666655
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.28 E-value=4e-07 Score=75.25 Aligned_cols=85 Identities=38% Similarity=0.655 Sum_probs=53.8
Q ss_pred ccEEEecCCcCCCCcchhhcCCC-CCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFK-SLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
++.|++.+|.++ .+|.....+. +|+.|+++.|.+. .+|..+..+++|+.|++++|+++ .+|......+.|+.|+++
T Consensus 118 l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 118 LTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred eeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheecc
Confidence 456667777766 4555455553 6777777777766 55555666777777777777776 555554466666677777
Q ss_pred cCcCccCCCC
Q 035751 81 YNRLWGRIPR 90 (195)
Q Consensus 81 ~N~l~g~~p~ 90 (195)
+|.++ .+|.
T Consensus 195 ~N~i~-~l~~ 203 (394)
T COG4886 195 GNKIS-DLPP 203 (394)
T ss_pred CCccc-cCch
Confidence 77666 4443
No 36
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.25 E-value=4.1e-07 Score=72.70 Aligned_cols=86 Identities=31% Similarity=0.366 Sum_probs=53.2
Q ss_pred CccEEEecCCcCCCCcchhhcCCCC---CcEEEccCCCCCC----CCccccCCC-CCCcEEeCCCCcCCCC----Cchhh
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKS---LKVLNLSHNSLTG----NIPVSFDNM-TALESLDLSFNKLEGR----IPKQL 68 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~---L~~L~Ls~N~l~~----~~p~~~~~l-~~L~~L~l~~N~l~~~----~p~~~ 68 (195)
+|+.|++++|.+.+..+..+..+.. |+.|++++|.+++ .+...+..+ ++|+.|++++|.+++. ++..+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 3567777777776555555555554 7777777777662 222334455 6777777777777632 23344
Q ss_pred hcCCCccEEEcccCcCcc
Q 035751 69 LSVTTLALLNLSYNRLWG 86 (195)
Q Consensus 69 ~~l~~L~~L~l~~N~l~g 86 (195)
..+..|+.|++++|.+++
T Consensus 162 ~~~~~L~~L~l~~n~l~~ 179 (319)
T cd00116 162 RANRDLKELNLANNGIGD 179 (319)
T ss_pred HhCCCcCEEECcCCCCch
Confidence 555677777777777763
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.15 E-value=7.9e-07 Score=73.50 Aligned_cols=82 Identities=35% Similarity=0.556 Sum_probs=70.0
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|+.|++++|.+. .+|..+..+++|+.|+++.|.++ .+|...+.++.|+.|++++|+++ .+|........|..+.++
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS 217 (394)
T ss_pred hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhc
Confidence 4788999999998 67677899999999999999999 77776668899999999999998 778776667779999999
Q ss_pred cCcCc
Q 035751 81 YNRLW 85 (195)
Q Consensus 81 ~N~l~ 85 (195)
+|.+.
T Consensus 218 ~N~~~ 222 (394)
T COG4886 218 NNSII 222 (394)
T ss_pred CCcce
Confidence 99543
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.10 E-value=2.2e-06 Score=77.41 Aligned_cols=86 Identities=28% Similarity=0.342 Sum_probs=63.8
Q ss_pred ccEEEecCCc--CCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEc
Q 035751 2 FRATDLSSNR--FCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNL 79 (195)
Q Consensus 2 L~~L~Ls~N~--l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l 79 (195)
|++|-+..|. +....++.|..++.|+.|||++|.=-+.+|..++.|-+|++|++++..++ .+|..+.++..|.+||+
T Consensus 547 L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl 625 (889)
T KOG4658|consen 547 LRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNL 625 (889)
T ss_pred cceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecc
Confidence 5667777775 44344455777888888888887655588888888888888888888887 77888888888888888
Q ss_pred ccCcCccCC
Q 035751 80 SYNRLWGRI 88 (195)
Q Consensus 80 ~~N~l~g~~ 88 (195)
..+.-...+
T Consensus 626 ~~~~~l~~~ 634 (889)
T KOG4658|consen 626 EVTGRLESI 634 (889)
T ss_pred ccccccccc
Confidence 776544333
No 39
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.00 E-value=7.4e-06 Score=60.89 Aligned_cols=81 Identities=26% Similarity=0.194 Sum_probs=47.7
Q ss_pred cEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCC-CchhhhcCCCccEEEccc
Q 035751 3 RATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGR-IPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 3 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~L~l~~ 81 (195)
..+||++|.+.. -+.|..++.|.+|.|++|+|+...|.--..+++|..|.+.+|.|... .-..+..+++|++|.+-+
T Consensus 45 d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 45 DAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 346666666652 22355666677777777777655555444556677777777766521 112345566667776666
Q ss_pred CcCc
Q 035751 82 NRLW 85 (195)
Q Consensus 82 N~l~ 85 (195)
|+.+
T Consensus 123 Npv~ 126 (233)
T KOG1644|consen 123 NPVE 126 (233)
T ss_pred Cchh
Confidence 6665
No 40
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.97 E-value=5.1e-07 Score=63.24 Aligned_cols=86 Identities=24% Similarity=0.338 Sum_probs=68.5
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
++.|+|++|.|+ .+|.++..++.|+.|+++.|.+. ..|..+..|.+|..|+..+|.+. .+|-.+.--+.....++.+
T Consensus 79 ~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgn 155 (177)
T KOG4579|consen 79 ATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGN 155 (177)
T ss_pred hhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcC
Confidence 567899999999 78999999999999999999999 77888888999999999999998 6666544333334445566
Q ss_pred CcCccCCCC
Q 035751 82 NRLWGRIPR 90 (195)
Q Consensus 82 N~l~g~~p~ 90 (195)
+++.+..+.
T Consensus 156 epl~~~~~~ 164 (177)
T KOG4579|consen 156 EPLGDETKK 164 (177)
T ss_pred CcccccCcc
Confidence 667655444
No 41
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.96 E-value=1.6e-05 Score=59.12 Aligned_cols=99 Identities=21% Similarity=0.287 Sum_probs=69.2
Q ss_pred EEEecCCcCCCCcchhhc-CCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcccC
Q 035751 4 ATDLSSNRFCGEIPKVLG-NFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYN 82 (195)
Q Consensus 4 ~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N 82 (195)
.++|.+..+. .+-. ++ .+.+...+||+.|.+. .+ ..|..++.|.+|.+++|+|+..-|.--..+++|..|.+.+|
T Consensus 23 e~~LR~lkip-~ien-lg~~~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 23 ELDLRGLKIP-VIEN-LGATLDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred cccccccccc-chhh-ccccccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 4666666655 2221 22 3467889999999987 33 46889999999999999999776765566788999999999
Q ss_pred cCc--cCCCCCCccCCCCcccccCCc
Q 035751 83 RLW--GRIPRGNQFNTFENDSYIGNI 106 (195)
Q Consensus 83 ~l~--g~~p~~~~~~~~~~~~~~~n~ 106 (195)
.|. |.+.....+..+..+++.+|+
T Consensus 99 si~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 99 SIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred chhhhhhcchhccCCccceeeecCCc
Confidence 986 222222334455566666664
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.95 E-value=4.4e-06 Score=75.46 Aligned_cols=82 Identities=28% Similarity=0.485 Sum_probs=72.7
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
.|+.|||++|.=-+.+|..++.|-+|++|+|++..+. .+|..+++|..|.+|++..+.-...+|.....+.+|++|.+-
T Consensus 572 ~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 572 LLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP 650 (889)
T ss_pred ceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEee
Confidence 3789999998776799999999999999999999999 899999999999999999988665667777779999999886
Q ss_pred cCc
Q 035751 81 YNR 83 (195)
Q Consensus 81 ~N~ 83 (195)
.-.
T Consensus 651 ~s~ 653 (889)
T KOG4658|consen 651 RSA 653 (889)
T ss_pred ccc
Confidence 543
No 43
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.93 E-value=1.2e-06 Score=73.85 Aligned_cols=84 Identities=31% Similarity=0.485 Sum_probs=74.1
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
|..||.+.|.+. .+|..++++.+|+.|.+..|.+. .+|..+..| .|..||++.|+++ .+|-.|.+|..|++|-|.+
T Consensus 168 l~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~Len 243 (722)
T KOG0532|consen 168 LAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLEN 243 (722)
T ss_pred HHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeecc
Confidence 567899999998 78888999999999999999998 778888855 5899999999998 8899999999999999999
Q ss_pred CcCccCCCC
Q 035751 82 NRLWGRIPR 90 (195)
Q Consensus 82 N~l~g~~p~ 90 (195)
|++. ..|.
T Consensus 244 NPLq-SPPA 251 (722)
T KOG0532|consen 244 NPLQ-SPPA 251 (722)
T ss_pred CCCC-CChH
Confidence 9997 4443
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.84 E-value=5.4e-06 Score=69.21 Aligned_cols=80 Identities=38% Similarity=0.502 Sum_probs=50.5
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|..|++.+|.|.+ +...+..+.+|+.|++++|.|+... .+..++.|+.|++++|.|+. + ..+..+..|+.++++
T Consensus 96 ~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 96 SLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISD-I-SGLESLKSLKLLDLS 170 (414)
T ss_pred ceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhhheeccCcchh-c-cCCccchhhhcccCC
Confidence 35667777777773 3333556777777777777776332 34556667777777777762 2 234446667777777
Q ss_pred cCcCc
Q 035751 81 YNRLW 85 (195)
Q Consensus 81 ~N~l~ 85 (195)
+|.+.
T Consensus 171 ~n~i~ 175 (414)
T KOG0531|consen 171 YNRIV 175 (414)
T ss_pred cchhh
Confidence 77766
No 45
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=6.7e-06 Score=67.44 Aligned_cols=84 Identities=21% Similarity=0.256 Sum_probs=58.1
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCc--cccCCCCCCcEEeCCCCcCCCC-Cchh-----hhcCC
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIP--VSFDNMTALESLDLSFNKLEGR-IPKQ-----LLSVT 72 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~l~~N~l~~~-~p~~-----~~~l~ 72 (195)
+|..|+|.+|..-........-+..|++|||++|.+- ..+ ...+.++.|+.|+++.+.+... +|+. ...++
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~ 301 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFP 301 (505)
T ss_pred cHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccc
Confidence 3566777777433344444556778888888888865 333 4567788888888888887643 3443 45678
Q ss_pred CccEEEcccCcCc
Q 035751 73 TLALLNLSYNRLW 85 (195)
Q Consensus 73 ~L~~L~l~~N~l~ 85 (195)
+|++|++..|++.
T Consensus 302 kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 302 KLEYLNISENNIR 314 (505)
T ss_pred cceeeecccCccc
Confidence 8999999999886
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.81 E-value=7.5e-07 Score=77.16 Aligned_cols=80 Identities=34% Similarity=0.454 Sum_probs=65.7
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
|.+.+.+.|.+. ....++.-++.|+.|||++|+++.. +.+..++.|++|||+.|.++ .+|..-..-..|..|++.+
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecc
Confidence 455678889988 7788888899999999999999844 37899999999999999998 5665322223499999999
Q ss_pred CcCc
Q 035751 82 NRLW 85 (195)
Q Consensus 82 N~l~ 85 (195)
|.++
T Consensus 242 N~l~ 245 (1096)
T KOG1859|consen 242 NALT 245 (1096)
T ss_pred cHHH
Confidence 9987
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.78 E-value=1e-05 Score=67.51 Aligned_cols=80 Identities=34% Similarity=0.429 Sum_probs=64.1
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
++.+++..|.+.. +-..+..+.+|+.|++..|.|. .+...+..+++|++|++++|.|+.. ..+..++.|+.|++++
T Consensus 74 l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 74 LKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSG 149 (414)
T ss_pred HHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhheecc
Confidence 3456677787773 4445788999999999999998 4444478899999999999999854 3466778899999999
Q ss_pred CcCc
Q 035751 82 NRLW 85 (195)
Q Consensus 82 N~l~ 85 (195)
|.++
T Consensus 150 N~i~ 153 (414)
T KOG0531|consen 150 NLIS 153 (414)
T ss_pred Ccch
Confidence 9998
No 48
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.26 E-value=0.00018 Score=55.50 Aligned_cols=64 Identities=28% Similarity=0.345 Sum_probs=30.4
Q ss_pred hcCCCCCcEEEccCC--CCCCCCccccCCCCCCcEEeCCCCcCCCCCchh---hhcCCCccEEEcccCcCc
Q 035751 20 LGNFKSLKVLNLSHN--SLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQ---LLSVTTLALLNLSYNRLW 85 (195)
Q Consensus 20 ~~~l~~L~~L~Ls~N--~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~---~~~l~~L~~L~l~~N~l~ 85 (195)
|..|++|++|+++.| ++.+.++.....+++|++|++++|+|+- ++. +..+.+|..|++.+|..+
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCcc
Confidence 334555555555555 4444444444444555555555555541 221 223444445555554443
No 49
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00017 Score=59.36 Aligned_cols=84 Identities=25% Similarity=0.339 Sum_probs=65.3
Q ss_pred CccEEEecCCcCCCCcc--hhhcCCCCCcEEEccCCCCCCC-Cccc-----cCCCCCCcEEeCCCCcCCCCCc--hhhhc
Q 035751 1 MFRATDLSSNRFCGEIP--KVLGNFKSLKVLNLSHNSLTGN-IPVS-----FDNMTALESLDLSFNKLEGRIP--KQLLS 70 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~-~p~~-----~~~l~~L~~L~l~~N~l~~~~p--~~~~~ 70 (195)
.|++|||++|++- ..+ ...+.++.|..|+++.+.+... .|+. ...+++|++|+++.|++. ..+ ..+..
T Consensus 247 ~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~ 324 (505)
T KOG3207|consen 247 TLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRT 324 (505)
T ss_pred HHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhc
Confidence 3789999999887 344 5578899999999999998743 2332 356899999999999996 333 35677
Q ss_pred CCCccEEEcccCcCcc
Q 035751 71 VTTLALLNLSYNRLWG 86 (195)
Q Consensus 71 l~~L~~L~l~~N~l~g 86 (195)
+.+|+.|.+..|.++.
T Consensus 325 l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 325 LENLKHLRITLNYLNK 340 (505)
T ss_pred cchhhhhhcccccccc
Confidence 8889999999999873
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.00017 Score=56.92 Aligned_cols=84 Identities=29% Similarity=0.290 Sum_probs=59.3
Q ss_pred ccEEEecCCcCCC--CcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCC-CchhhhcCCCccEEE
Q 035751 2 FRATDLSSNRFCG--EIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGR-IPKQLLSVTTLALLN 78 (195)
Q Consensus 2 L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~L~ 78 (195)
++.|||.+|.|+. .+..-+.+|+.|++|+|+.|.+...+...-..+.+|++|-|.+..+.-. ....+..++.++.|.
T Consensus 73 v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelH 152 (418)
T KOG2982|consen 73 VKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELH 152 (418)
T ss_pred hhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhh
Confidence 4578899998884 3444567889999999999998744433224667888888888776532 333455677888888
Q ss_pred cccCcCc
Q 035751 79 LSYNRLW 85 (195)
Q Consensus 79 l~~N~l~ 85 (195)
++.|.+.
T Consensus 153 mS~N~~r 159 (418)
T KOG2982|consen 153 MSDNSLR 159 (418)
T ss_pred hccchhh
Confidence 8888554
No 51
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.14 E-value=0.00022 Score=33.74 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=13.7
Q ss_pred CccEEEecCCcCCCCcchhhcC
Q 035751 1 MFRATDLSSNRFCGEIPKVLGN 22 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~ 22 (195)
+|++|||++|+|+ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4677777777777 56655544
No 52
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.60 E-value=0.0006 Score=32.21 Aligned_cols=18 Identities=61% Similarity=0.870 Sum_probs=8.7
Q ss_pred CcEEEccCCCCCCCCcccc
Q 035751 26 LKVLNLSHNSLTGNIPVSF 44 (195)
Q Consensus 26 L~~L~Ls~N~l~~~~p~~~ 44 (195)
|++|||++|.++ .+|+.|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 445555555555 444443
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.41 E-value=0.0028 Score=56.35 Aligned_cols=81 Identities=19% Similarity=0.387 Sum_probs=39.1
Q ss_pred ccEEEecCCcCCC-CcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCC-CCchhhhcCCCccEEEc
Q 035751 2 FRATDLSSNRFCG-EIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEG-RIPKQLLSVTTLALLNL 79 (195)
Q Consensus 2 L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~-~~p~~~~~l~~L~~L~l 79 (195)
|+.|.+++-.+.. ..-.-..++++|..||+|+.+++ .+ ..++.|.+|+.|.+.+=.+.. ..-..+.++++|+.||+
T Consensus 150 L~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDI 227 (699)
T KOG3665|consen 150 LRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDI 227 (699)
T ss_pred cceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeec
Confidence 5555555544431 12233345566666666666665 22 345555555555555433331 11123445555555555
Q ss_pred ccCcC
Q 035751 80 SYNRL 84 (195)
Q Consensus 80 ~~N~l 84 (195)
|....
T Consensus 228 S~~~~ 232 (699)
T KOG3665|consen 228 SRDKN 232 (699)
T ss_pred ccccc
Confidence 54433
No 54
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.41 E-value=0.0026 Score=49.18 Aligned_cols=68 Identities=26% Similarity=0.410 Sum_probs=51.9
Q ss_pred cchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCC--cCCCCCchhhhcCCCccEEEcccCcCc
Q 035751 16 IPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFN--KLEGRIPKQLLSVTTLALLNLSYNRLW 85 (195)
Q Consensus 16 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N--~l~~~~p~~~~~l~~L~~L~l~~N~l~ 85 (195)
+..-...+..|+.|.+.+-.++ .. ..|..|++|+.|.++.| .+.+.++-....+++|+++++++|++.
T Consensus 35 ~~gl~d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccccccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 4444455667777777777776 22 45778999999999999 666666666667799999999999997
No 55
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.36 E-value=0.00098 Score=53.55 Aligned_cols=85 Identities=24% Similarity=0.301 Sum_probs=62.1
Q ss_pred CccEEEecCCcCCC----CcchhhcCCCCCcEEEccCCCCCCC----CccccCCCCCCcEEeCCCCcCCCCCchhhh---
Q 035751 1 MFRATDLSSNRFCG----EIPKVLGNFKSLKVLNLSHNSLTGN----IPVSFDNMTALESLDLSFNKLEGRIPKQLL--- 69 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~--- 69 (195)
+|+.+.++.|.|.. .+...|..+++|+.|||..|.++.. +...+..+++|+.|+++++.+...-...+.
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 46778888887762 2334577889999999999998732 334567788899999999888754333322
Q ss_pred --cCCCccEEEcccCcCc
Q 035751 70 --SVTTLALLNLSYNRLW 85 (195)
Q Consensus 70 --~l~~L~~L~l~~N~l~ 85 (195)
..++|+.+.+.+|.++
T Consensus 266 ~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEIT 283 (382)
T ss_pred hccCCCCceeccCcchhH
Confidence 3678999999999886
No 56
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.23 E-value=0.0029 Score=50.90 Aligned_cols=85 Identities=25% Similarity=0.266 Sum_probs=65.3
Q ss_pred CccEEEecCCcCCCC----cchhhcCCCCCcEEEccCCCCCCC----CccccCCCCCCcEEeCCCCcCCCC----Cchhh
Q 035751 1 MFRATDLSSNRFCGE----IPKVLGNFKSLKVLNLSHNSLTGN----IPVSFDNMTALESLDLSFNKLEGR----IPKQL 68 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~----~p~~~ 68 (195)
.|+.++...|++... +...|...+.|+.+.++.|.|... +-..|..+++|+.|||..|.++.. +...+
T Consensus 158 ~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL 237 (382)
T KOG1909|consen 158 KLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL 237 (382)
T ss_pred ceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHh
Confidence 478888999988632 334467778999999999988622 234578899999999999999754 33456
Q ss_pred hcCCCccEEEcccCcCc
Q 035751 69 LSVTTLALLNLSYNRLW 85 (195)
Q Consensus 69 ~~l~~L~~L~l~~N~l~ 85 (195)
..++.|+.|+++++.+.
T Consensus 238 ~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 238 SSWPHLRELNLGDCLLE 254 (382)
T ss_pred cccchheeecccccccc
Confidence 67888999999999886
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.75 E-value=0.0076 Score=53.64 Aligned_cols=57 Identities=19% Similarity=0.324 Sum_probs=28.6
Q ss_pred CCCCcEEEccCCCCCC-CCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 23 FKSLKVLNLSHNSLTG-NIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 23 l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
||+|+.|.+++-.+.. ..-....++|+|..||+|+.+++. + ..+..+.+|+.|.+.+
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQVLSMRN 204 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHHHhccC
Confidence 4566666655544431 112233445566666666655552 2 4455555555555544
No 58
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.70 E-value=0.00012 Score=55.92 Aligned_cols=80 Identities=20% Similarity=0.190 Sum_probs=59.7
Q ss_pred cEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcccC
Q 035751 3 RATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYN 82 (195)
Q Consensus 3 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N 82 (195)
+.||++.|++. .....|+-++.|..||++.|.+. ..|..++++..+..+++..|..+ ..|.++...+.++++++-.|
T Consensus 45 tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 45 TVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKT 121 (326)
T ss_pred eeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccC
Confidence 45777777766 45555666777777888888777 67777777777788888877777 67777778888888888777
Q ss_pred cCc
Q 035751 83 RLW 85 (195)
Q Consensus 83 ~l~ 85 (195)
.+.
T Consensus 122 ~~~ 124 (326)
T KOG0473|consen 122 EFF 124 (326)
T ss_pred cch
Confidence 764
No 59
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.65 E-value=0.00097 Score=52.33 Aligned_cols=81 Identities=22% Similarity=0.183 Sum_probs=48.6
Q ss_pred cEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCC-chhhhcCCCccEEEccc
Q 035751 3 RATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRI-PKQLLSVTTLALLNLSY 81 (195)
Q Consensus 3 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~L~l~~ 81 (195)
+.|+.-++.|+.+ .....|+.|+.|.||-|.|+..- .+..+++|+.|+|..|.|...- -..+.++++|+.|-|..
T Consensus 22 kKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 22 KKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred hhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 4455556665522 22346677777777777777332 3566777777777777775321 11345677777777777
Q ss_pred CcCccC
Q 035751 82 NRLWGR 87 (195)
Q Consensus 82 N~l~g~ 87 (195)
|+-.|.
T Consensus 98 NPCc~~ 103 (388)
T KOG2123|consen 98 NPCCGE 103 (388)
T ss_pred CCcccc
Confidence 766544
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.64 E-value=0.031 Score=46.59 Aligned_cols=69 Identities=17% Similarity=0.265 Sum_probs=46.4
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccC-CCCCCCCccccCCCCCCcEEeCCCC-cCCCCCchhhhcCCCccEEE
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSH-NSLTGNIPVSFDNMTALESLDLSFN-KLEGRIPKQLLSVTTLALLN 78 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~l~~N-~l~~~~p~~~~~l~~L~~L~ 78 (195)
+++.|++++|.++ .+|. -..+|+.|++++ +.++ .+|..+. ++|++|++++| .+. .+|.. |+.|+
T Consensus 53 ~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~Cs~L~-sLP~s------Le~L~ 118 (426)
T PRK15386 53 ASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHCPEIS-GLPES------VRSLE 118 (426)
T ss_pred CCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcc-cCCchhh--hhhhheEccCccccc-ccccc------cceEE
Confidence 3678999999888 5662 235799999987 4454 6676553 57899999988 554 45543 55555
Q ss_pred cccCc
Q 035751 79 LSYNR 83 (195)
Q Consensus 79 l~~N~ 83 (195)
+..|.
T Consensus 119 L~~n~ 123 (426)
T PRK15386 119 IKGSA 123 (426)
T ss_pred eCCCC
Confidence 55544
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.46 E-value=0.05 Score=45.42 Aligned_cols=76 Identities=17% Similarity=0.291 Sum_probs=41.8
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCC-CCCCCCccccCCCCCCcEEeCCCCcCC--CCCchhhhcC------
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHN-SLTGNIPVSFDNMTALESLDLSFNKLE--GRIPKQLLSV------ 71 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~l~~N~l~--~~~p~~~~~l------ 71 (195)
+|+.|.++++.--..+|+.+. .+|+.|++++| .+. .+|. +|+.|+++.|... +.+|..+..+
T Consensus 73 sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n 143 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRSLEIKGSATDSIKNVPNGLTSLSINSYN 143 (426)
T ss_pred CCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccceEEeCCCCCcccccCcchHhheeccccc
Confidence 467788877332235665543 57888888877 444 4443 3455555554421 1344443322
Q ss_pred ------------CCccEEEcccCcCc
Q 035751 72 ------------TTLALLNLSYNRLW 85 (195)
Q Consensus 72 ------------~~L~~L~l~~N~l~ 85 (195)
++|++|++++|...
T Consensus 144 ~~~~~~lp~~LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 144 PENQARIDNLISPSLKTLSLTGCSNI 169 (426)
T ss_pred cccccccccccCCcccEEEecCCCcc
Confidence 35667777766644
No 62
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.39 E-value=0.0089 Score=26.24 Aligned_cols=9 Identities=56% Similarity=0.748 Sum_probs=2.9
Q ss_pred cEEeCCCCc
Q 035751 51 ESLDLSFNK 59 (195)
Q Consensus 51 ~~L~l~~N~ 59 (195)
+.|++++|+
T Consensus 4 ~~L~l~~n~ 12 (17)
T PF13504_consen 4 RTLDLSNNR 12 (17)
T ss_dssp SEEEETSS-
T ss_pred CEEECCCCC
Confidence 333333333
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.38 E-value=0.045 Score=37.47 Aligned_cols=78 Identities=22% Similarity=0.255 Sum_probs=40.4
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
|+.+.+.. .+...-...|.++.+|+.+++..+ +.......|..+.+|+.+.+.+ .+.......+..+++|+.+++..
T Consensus 14 l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 14 LESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPS 90 (129)
T ss_dssp --EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETT
T ss_pred CCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCc
Confidence 55666653 455444556777777777777765 5534445567776777777765 33323344555677777777755
Q ss_pred C
Q 035751 82 N 82 (195)
Q Consensus 82 N 82 (195)
+
T Consensus 91 ~ 91 (129)
T PF13306_consen 91 N 91 (129)
T ss_dssp T
T ss_pred c
Confidence 4
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.30 E-value=0.0014 Score=51.45 Aligned_cols=75 Identities=25% Similarity=0.265 Sum_probs=59.5
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCc-cccCCCCCCcEEeCCCCcCCCCCch-----hhhcCCCcc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIP-VSFDNMTALESLDLSFNKLEGRIPK-----QLLSVTTLA 75 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~-----~~~~l~~L~ 75 (195)
|+.|.||-|.|+..-| +..++.|++|+|..|.|....- ..+.++++|+.|.|..|.-.|.-+. .+..+++|+
T Consensus 43 lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLk 120 (388)
T KOG2123|consen 43 LEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLK 120 (388)
T ss_pred ceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccch
Confidence 6789999999995444 7789999999999999973221 3468899999999999988776554 355688888
Q ss_pred EEE
Q 035751 76 LLN 78 (195)
Q Consensus 76 ~L~ 78 (195)
.||
T Consensus 121 KLD 123 (388)
T KOG2123|consen 121 KLD 123 (388)
T ss_pred hcc
Confidence 876
No 65
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.04 E-value=0.053 Score=42.78 Aligned_cols=13 Identities=31% Similarity=0.330 Sum_probs=9.1
Q ss_pred ccEEEecCCcCCC
Q 035751 2 FRATDLSSNRFCG 14 (195)
Q Consensus 2 L~~L~Ls~N~l~~ 14 (195)
++.+|||+|.|..
T Consensus 32 ~~evdLSGNtigt 44 (388)
T COG5238 32 LVEVDLSGNTIGT 44 (388)
T ss_pred eeEEeccCCcccH
Confidence 5677888887653
No 66
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.81 E-value=0.034 Score=27.03 Aligned_cols=14 Identities=50% Similarity=0.612 Sum_probs=7.6
Q ss_pred CCCcEEeCCCCcCC
Q 035751 48 TALESLDLSFNKLE 61 (195)
Q Consensus 48 ~~L~~L~l~~N~l~ 61 (195)
++|++|++++|.|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555555
No 67
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.81 E-value=0.034 Score=27.03 Aligned_cols=14 Identities=50% Similarity=0.612 Sum_probs=7.6
Q ss_pred CCCcEEeCCCCcCC
Q 035751 48 TALESLDLSFNKLE 61 (195)
Q Consensus 48 ~~L~~L~l~~N~l~ 61 (195)
++|++|++++|.|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555555
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.12 E-value=0.092 Score=35.90 Aligned_cols=77 Identities=18% Similarity=0.271 Sum_probs=47.9
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|+.+++.++ +...-...|..+..|+.+.+.. .+.......|..+++|+.+++..+ +.......+... .|+.+.+.
T Consensus 36 ~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 36 SLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp T-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 4678888875 6655567788888999999976 444345567888999999999876 553344456665 88888876
Q ss_pred c
Q 035751 81 Y 81 (195)
Q Consensus 81 ~ 81 (195)
.
T Consensus 112 ~ 112 (129)
T PF13306_consen 112 S 112 (129)
T ss_dssp T
T ss_pred C
Confidence 5
No 69
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.06 E-value=0.018 Score=45.84 Aligned_cols=64 Identities=28% Similarity=0.359 Sum_probs=47.3
Q ss_pred CCCCCcEEEccCCCCCCC--CccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcccCcCc
Q 035751 22 NFKSLKVLNLSHNSLTGN--IPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRLW 85 (195)
Q Consensus 22 ~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 85 (195)
..+.++.|||.+|.|+.. +...+.+||.|++|+++.|++...+-..-....+|+.|-|.+..+.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~ 134 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLS 134 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCC
Confidence 356788999999999743 4455788999999999999997544322135678888888776654
No 70
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.01 E-value=0.052 Score=26.36 Aligned_cols=17 Identities=35% Similarity=0.542 Sum_probs=12.3
Q ss_pred CCCCcEEEccCCCCCCC
Q 035751 23 FKSLKVLNLSHNSLTGN 39 (195)
Q Consensus 23 l~~L~~L~Ls~N~l~~~ 39 (195)
|++|+.|+|++|.|+..
T Consensus 1 L~~L~~L~L~~N~l~~l 17 (26)
T smart00370 1 LPNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCCEEECCCCcCCcC
Confidence 45778888888888733
No 71
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.01 E-value=0.052 Score=26.36 Aligned_cols=17 Identities=35% Similarity=0.542 Sum_probs=12.3
Q ss_pred CCCCcEEEccCCCCCCC
Q 035751 23 FKSLKVLNLSHNSLTGN 39 (195)
Q Consensus 23 l~~L~~L~Ls~N~l~~~ 39 (195)
|++|+.|+|++|.|+..
T Consensus 1 L~~L~~L~L~~N~l~~l 17 (26)
T smart00369 1 LPNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCCEEECCCCcCCcC
Confidence 45778888888888733
No 72
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=91.87 E-value=0.078 Score=28.81 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=10.0
Q ss_pred hhhhhhHHHHHHHHHHHHhccCc
Q 035751 148 KMGYAFGLVIGLSIGYMVFSARK 170 (195)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~ 170 (195)
++++.+++++.+++++++++|||
T Consensus 16 ~VvVPV~vI~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 16 GVVVPVGVIIIVLGAFLFFWYRR 38 (40)
T ss_pred EEEechHHHHHHHHHHhheEEec
Confidence 33444444444444444444333
No 73
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=91.83 E-value=0.17 Score=34.88 Aligned_cols=16 Identities=13% Similarity=-0.023 Sum_probs=6.7
Q ss_pred hhhhhhhhhHHHHHHH
Q 035751 145 KMAKMGYAFGLVIGLS 160 (195)
Q Consensus 145 ~~~~~~~~~~~~~~~~ 160 (195)
..+++|+++|++..++
T Consensus 67 ~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHH
Confidence 3344444444433333
No 74
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=91.37 E-value=0.054 Score=43.24 Aligned_cols=56 Identities=29% Similarity=0.282 Sum_probs=25.7
Q ss_pred CCCCCcEEEccCCC-CCCCCccccCCCCCCcEEeCCCCcCCCCCchh---hhcCCCccEEEc
Q 035751 22 NFKSLKVLNLSHNS-LTGNIPVSFDNMTALESLDLSFNKLEGRIPKQ---LLSVTTLALLNL 79 (195)
Q Consensus 22 ~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~---~~~l~~L~~L~l 79 (195)
.+++|..|||+.+. ++...-..|..++.|++|.++.+.. .+|.. +...++|.+||+
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv 370 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDV 370 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEe
Confidence 34555555555443 3322233344555555555555442 23332 223445555554
No 75
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=91.31 E-value=0.21 Score=39.53 Aligned_cols=39 Identities=28% Similarity=0.392 Sum_probs=17.2
Q ss_pred CCCCCcEEEccCCCCCCCCccc----cCCCCCCcEEeCCCCcC
Q 035751 22 NFKSLKVLNLSHNSLTGNIPVS----FDNMTALESLDLSFNKL 60 (195)
Q Consensus 22 ~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~l~~N~l 60 (195)
.++.|+..+||.|.+....|.. ++.-+.|.+|.+++|.+
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 4444555555555444333322 23334444555544444
No 76
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=91.22 E-value=0.011 Score=47.11 Aligned_cols=85 Identities=26% Similarity=0.282 Sum_probs=56.2
Q ss_pred ccEEEecCCcCCCC-cchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCC-cCCCC-CchhhhcCCCccEEE
Q 035751 2 FRATDLSSNRFCGE-IPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFN-KLEGR-IPKQLLSVTTLALLN 78 (195)
Q Consensus 2 L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N-~l~~~-~p~~~~~l~~L~~L~ 78 (195)
|++||||+..|+.. .-.-+..+.+|+.|.|.++++...+-..++.-.+|+.|+++.. .++.. ..-.+..++.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 56778887777632 2234566778888888888887666677777778888888764 34421 112345677788888
Q ss_pred cccCcCcc
Q 035751 79 LSYNRLWG 86 (195)
Q Consensus 79 l~~N~l~g 86 (195)
++.+.++.
T Consensus 267 lsWc~l~~ 274 (419)
T KOG2120|consen 267 LSWCFLFT 274 (419)
T ss_pred chHhhccc
Confidence 87776653
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.39 E-value=0.043 Score=26.15 Aligned_cols=13 Identities=54% Similarity=0.733 Sum_probs=5.0
Q ss_pred CCcEEeCCCCcCC
Q 035751 49 ALESLDLSFNKLE 61 (195)
Q Consensus 49 ~L~~L~l~~N~l~ 61 (195)
+|++|+|++|.|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 4444444444443
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.76 E-value=0.0093 Score=45.84 Aligned_cols=69 Identities=30% Similarity=0.382 Sum_probs=58.5
Q ss_pred hhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcccCcCccCCC
Q 035751 18 KVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRLWGRIP 89 (195)
Q Consensus 18 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p 89 (195)
.++......+.||++.|++. .+-..|+-++.|..||++.|++. ..|..+.....+..+++..|..+ ..|
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p 104 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQP 104 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCC
Confidence 45667788899999999987 66777888999999999999998 78988888888888988888887 444
No 79
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=88.42 E-value=0.37 Score=34.33 Aligned_cols=26 Identities=15% Similarity=0.346 Sum_probs=12.6
Q ss_pred hhhhhhhHHHHHHHHHHHHhccCccc
Q 035751 147 AKMGYAFGLVIGLSIGYMVFSARKPQ 172 (195)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (195)
+++|+++++++++++++++|++|+++
T Consensus 54 vVVGVGg~ill~il~lvf~~c~r~kk 79 (154)
T PF04478_consen 54 VVVGVGGPILLGILALVFIFCIRRKK 79 (154)
T ss_pred EEecccHHHHHHHHHhheeEEEeccc
Confidence 34455555555555555444433333
No 80
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=88.39 E-value=0.34 Score=23.73 Aligned_cols=13 Identities=38% Similarity=0.585 Sum_probs=6.4
Q ss_pred CCcEEeCCCCcCC
Q 035751 49 ALESLDLSFNKLE 61 (195)
Q Consensus 49 ~L~~L~l~~N~l~ 61 (195)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3444555555554
No 81
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=88.28 E-value=0.47 Score=23.25 Aligned_cols=13 Identities=62% Similarity=0.790 Sum_probs=6.2
Q ss_pred CCcEEeCCCCcCC
Q 035751 49 ALESLDLSFNKLE 61 (195)
Q Consensus 49 ~L~~L~l~~N~l~ 61 (195)
+|+.|+++.|.|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 4444444444443
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.84 E-value=0.085 Score=39.62 Aligned_cols=80 Identities=24% Similarity=0.199 Sum_probs=42.5
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCC-CCCCCcccc-CCCCCCcEEeCCCC-cCCCCCchhhhcCCCccEEE
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNS-LTGNIPVSF-DNMTALESLDLSFN-KLEGRIPKQLLSVTTLALLN 78 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~-~~l~~L~~L~l~~N-~l~~~~p~~~~~l~~L~~L~ 78 (195)
++++|-++..|..+=-+.+.+++.++.|.+.+.. +....-..+ +-.++|+.|++++| +|+..--..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 3456666666654444556666666666665543 111100111 13467777777765 35543334555666666665
Q ss_pred ccc
Q 035751 79 LSY 81 (195)
Q Consensus 79 l~~ 81 (195)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 543
No 83
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=85.41 E-value=0.68 Score=37.22 Aligned_cols=33 Identities=9% Similarity=0.035 Sum_probs=15.6
Q ss_pred chhhhhhhhhHHHHHHHHHH-HHhccCccchhhh
Q 035751 144 WKMAKMGYAFGLVIGLSIGY-MVFSARKPQWFAR 176 (195)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~w~~~ 176 (195)
...+++|++++.++.+++++ ++.+||.+..|..
T Consensus 272 ~vPIaVG~~La~lvlivLiaYli~Rrr~~~gYq~ 305 (306)
T PF01299_consen 272 LVPIAVGAALAGLVLIVLIAYLIGRRRSRAGYQS 305 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHhheeEeccccccccc
Confidence 44455565555444444333 3334444445654
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=84.64 E-value=0.88 Score=22.51 Aligned_cols=11 Identities=73% Similarity=0.830 Sum_probs=5.3
Q ss_pred CcEEeCCCCcC
Q 035751 50 LESLDLSFNKL 60 (195)
Q Consensus 50 L~~L~l~~N~l 60 (195)
|++|||++|.+
T Consensus 4 L~~LdL~~N~i 14 (28)
T smart00368 4 LRELDLSNNKL 14 (28)
T ss_pred cCEEECCCCCC
Confidence 44444444444
No 85
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=81.45 E-value=0.48 Score=28.52 Aligned_cols=19 Identities=16% Similarity=0.308 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHhc
Q 035751 149 MGYAFGLVIGLSIGYMVFS 167 (195)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~ 167 (195)
.|+++|+++.++++.+++.
T Consensus 16 aG~Vvgll~ailLIlf~iy 34 (64)
T PF01034_consen 16 AGGVVGLLFAILLILFLIY 34 (64)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444433333
No 86
>PF15050 SCIMP: SCIMP protein
Probab=79.79 E-value=1.7 Score=29.66 Aligned_cols=7 Identities=14% Similarity=0.719 Sum_probs=2.6
Q ss_pred chhhhhh
Q 035751 144 WKMAKMG 150 (195)
Q Consensus 144 ~~~~~~~ 150 (195)
|++++++
T Consensus 9 WiiLAVa 15 (133)
T PF15050_consen 9 WIILAVA 15 (133)
T ss_pred HHHHHHH
Confidence 3333333
No 87
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=78.36 E-value=1.3 Score=30.62 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=15.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHh
Q 035751 146 MAKMGYAFGLVIGLSIGYMVF 166 (195)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~ 166 (195)
..+++|++|+++|++++++++
T Consensus 64 ~~i~~Ii~gv~aGvIg~Illi 84 (122)
T PF01102_consen 64 PAIIGIIFGVMAGVIGIILLI 84 (122)
T ss_dssp TCHHHHHHHHHHHHHHHHHHH
T ss_pred cceeehhHHHHHHHHHHHHHH
Confidence 356888888888887776644
No 88
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=78.17 E-value=2.4 Score=22.66 Aligned_cols=11 Identities=18% Similarity=0.558 Sum_probs=4.5
Q ss_pred hhhhHHHHHHH
Q 035751 150 GYAFGLVIGLS 160 (195)
Q Consensus 150 ~~~~~~~~~~~ 160 (195)
++++++++|++
T Consensus 7 aIIv~V~vg~~ 17 (38)
T PF02439_consen 7 AIIVAVVVGMA 17 (38)
T ss_pred hHHHHHHHHHH
Confidence 33444444443
No 89
>PRK11677 hypothetical protein; Provisional
Probab=77.41 E-value=4.6 Score=28.35 Aligned_cols=15 Identities=40% Similarity=0.826 Sum_probs=8.1
Q ss_pred hHHHHHHHHHHHHhc
Q 035751 153 FGLVIGLSIGYMVFS 167 (195)
Q Consensus 153 ~~~~~~~~~~~~~~~ 167 (195)
++++||+++++++.+
T Consensus 8 i~livG~iiG~~~~R 22 (134)
T PRK11677 8 IGLVVGIIIGAVAMR 22 (134)
T ss_pred HHHHHHHHHHHHHHh
Confidence 445555555555554
No 90
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=76.09 E-value=2.5 Score=30.01 Aligned_cols=6 Identities=33% Similarity=0.728 Sum_probs=2.2
Q ss_pred HHhhhh
Q 035751 187 ARRAKR 192 (195)
Q Consensus 187 ~~~~~~ 192 (195)
-||+.+
T Consensus 48 qRRssk 53 (158)
T PF11770_consen 48 QRRSSK 53 (158)
T ss_pred Hhhhhh
Confidence 333333
No 91
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=75.98 E-value=6.3 Score=22.18 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=14.8
Q ss_pred chhhhhhhhhhhhhHHHhhhhccC
Q 035751 172 QWFARMVEGDHQQMKARRAKRRQR 195 (195)
Q Consensus 172 ~w~~~~~~~~~~~~~~~~~~~~~~ 195 (195)
+.|-+.+-++.|-+-.-|.|.-+|
T Consensus 23 krycrafrqdrdallear~kl~~r 46 (54)
T PF13260_consen 23 KRYCRAFRQDRDALLEARNKLFRR 46 (54)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhc
Confidence 345556666777776666665443
No 92
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=75.34 E-value=2.2 Score=35.81 Aligned_cols=64 Identities=25% Similarity=0.123 Sum_probs=33.9
Q ss_pred cCCCCCcEEEccCCC-CCCCCccccC-CCCCCcEEeCCCCc-CCCCC-chhhhcCCCccEEEcccCcC
Q 035751 21 GNFKSLKVLNLSHNS-LTGNIPVSFD-NMTALESLDLSFNK-LEGRI-PKQLLSVTTLALLNLSYNRL 84 (195)
Q Consensus 21 ~~l~~L~~L~Ls~N~-l~~~~p~~~~-~l~~L~~L~l~~N~-l~~~~-p~~~~~l~~L~~L~l~~N~l 84 (195)
..+.+|+.|++++.. ++...-..+. .+++|+.|.+.++. ++..- -.....++.|+.|+++++..
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 344667777777666 4422222222 25677777765555 44221 12233466677777775543
No 93
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=74.79 E-value=1.4 Score=30.27 Aligned_cols=20 Identities=25% Similarity=0.491 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhccCccc
Q 035751 153 FGLVIGLSIGYMVFSARKPQ 172 (195)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~ 172 (195)
++++++++.+++++++.+|+
T Consensus 88 v~lVl~llsg~lv~rrcrrr 107 (129)
T PF12191_consen 88 VVLVLALLSGFLVWRRCRRR 107 (129)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHhhhhcc
Confidence 33444444455555543333
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=70.90 E-value=3 Score=36.08 Aligned_cols=32 Identities=34% Similarity=0.315 Sum_probs=14.8
Q ss_pred cEEEecCCcCCCCcc--hhhcCCCCCcEEEccCC
Q 035751 3 RATDLSSNRFCGEIP--KVLGNFKSLKVLNLSHN 34 (195)
Q Consensus 3 ~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~Ls~N 34 (195)
..+.|++|++..... .--...++|.+|+|++|
T Consensus 221 ~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 221 LSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred eeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 345566665552111 11122355666666666
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=69.36 E-value=3.9 Score=41.90 Aligned_cols=33 Identities=27% Similarity=0.292 Sum_probs=28.4
Q ss_pred EccCCCCCCCCccccCCCCCCcEEeCCCCcCCC
Q 035751 30 NLSHNSLTGNIPVSFDNMTALESLDLSFNKLEG 62 (195)
Q Consensus 30 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 62 (195)
||++|+|+...+..|..+++|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 688999997777788899999999999998864
No 96
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=69.32 E-value=0.24 Score=42.33 Aligned_cols=84 Identities=29% Similarity=0.311 Sum_probs=48.5
Q ss_pred ccEEEecCCcCCCC----cchhhcCCCC-CcEEEccCCCCCCC----CccccCCC-CCCcEEeCCCCcCCCCCc----hh
Q 035751 2 FRATDLSSNRFCGE----IPKVLGNFKS-LKVLNLSHNSLTGN----IPVSFDNM-TALESLDLSFNKLEGRIP----KQ 67 (195)
Q Consensus 2 L~~L~Ls~N~l~~~----~p~~~~~l~~-L~~L~Ls~N~l~~~----~p~~~~~l-~~L~~L~l~~N~l~~~~p----~~ 67 (195)
+++|.+++|.++.. +...+...+. +..|++..|.+... ....+..+ ..++.++++.|.|+..-. ..
T Consensus 206 le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~ 285 (478)
T KOG4308|consen 206 LETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEV 285 (478)
T ss_pred HHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHH
Confidence 45566666665521 1122334444 55677777776522 22334444 567788888888765433 34
Q ss_pred hhcCCCccEEEcccCcCc
Q 035751 68 LLSVTTLALLNLSYNRLW 85 (195)
Q Consensus 68 ~~~l~~L~~L~l~~N~l~ 85 (195)
+..+..++.+.+..|.+.
T Consensus 286 l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 286 LVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HhhhHHHHHhhcccCccc
Confidence 455667777888877775
No 97
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=69.03 E-value=6.7 Score=24.53 Aligned_cols=8 Identities=13% Similarity=0.301 Sum_probs=3.0
Q ss_pred hhhHHHHH
Q 035751 151 YAFGLVIG 158 (195)
Q Consensus 151 ~~~~~~~~ 158 (195)
+++|+++.
T Consensus 6 ~~~g~~~l 13 (75)
T PF14575_consen 6 IIVGVLLL 13 (75)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33343333
No 98
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=67.67 E-value=8.4 Score=26.75 Aligned_cols=15 Identities=47% Similarity=0.957 Sum_probs=7.0
Q ss_pred hHHHHHHHHHHHHhc
Q 035751 153 FGLVIGLSIGYMVFS 167 (195)
Q Consensus 153 ~~~~~~~~~~~~~~~ 167 (195)
+++++|+++++++.+
T Consensus 4 i~lvvG~iiG~~~~r 18 (128)
T PF06295_consen 4 IGLVVGLIIGFLIGR 18 (128)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445544444443
No 99
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=66.83 E-value=3.9 Score=41.92 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=29.1
Q ss_pred EecCCcCCCCcchhhcCCCCCcEEEccCCCCC
Q 035751 6 DLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLT 37 (195)
Q Consensus 6 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 37 (195)
||++|+|+...+..|..|.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68999999777788999999999999999886
No 100
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=66.71 E-value=5 Score=26.89 Aligned_cols=20 Identities=10% Similarity=0.174 Sum_probs=9.7
Q ss_pred hhhhhhhhhhhhhHHHhhhh
Q 035751 173 WFARMVEGDHQQMKARRAKR 192 (195)
Q Consensus 173 w~~~~~~~~~~~~~~~~~~~ 192 (195)
+...+......|...||.++
T Consensus 39 ~~~~~p~~~~~~~~~rr~~k 58 (108)
T PF07219_consen 39 RLLSLPSRVRRWRRRRRRRK 58 (108)
T ss_pred HHHhChHHHHHHHHHHHHHH
Confidence 34444444555555555444
No 101
>PTZ00370 STEVOR; Provisional
Probab=65.93 E-value=6 Score=31.35 Aligned_cols=9 Identities=33% Similarity=0.612 Sum_probs=4.6
Q ss_pred ccCccchhh
Q 035751 167 SARKPQWFA 175 (195)
Q Consensus 167 ~~~~~~w~~ 175 (195)
+|||+.|..
T Consensus 280 rrRK~swkh 288 (296)
T PTZ00370 280 RRRKNSWKH 288 (296)
T ss_pred HhhcchhHH
Confidence 345555644
No 102
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=65.14 E-value=9.7 Score=27.21 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=13.4
Q ss_pred hhhhhHHHHHHHHHHHHhccCccc
Q 035751 149 MGYAFGLVIGLSIGYMVFSARKPQ 172 (195)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~ 172 (195)
+++++|+++..++++++++-++|+
T Consensus 9 ~~~~ag~a~~~flgYciYFD~KRR 32 (148)
T TIGR00985 9 VVIAAGIAAAAFLGYAIYFDYKRR 32 (148)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhc
Confidence 345555555666666666544443
No 103
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=64.74 E-value=6 Score=31.32 Aligned_cols=8 Identities=38% Similarity=0.708 Sum_probs=4.1
Q ss_pred cCccchhh
Q 035751 168 ARKPQWFA 175 (195)
Q Consensus 168 ~~~~~w~~ 175 (195)
|||+.|..
T Consensus 285 rRK~swkh 292 (295)
T TIGR01478 285 RRKKSWKH 292 (295)
T ss_pred hhcccccc
Confidence 45555643
No 104
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.53 E-value=5.5 Score=27.58 Aligned_cols=16 Identities=38% Similarity=0.756 Sum_probs=7.9
Q ss_pred hhHHHHHHHHHHHHhc
Q 035751 152 AFGLVIGLSIGYMVFS 167 (195)
Q Consensus 152 ~~~~~~~~~~~~~~~~ 167 (195)
++|+|+|++|++++.+
T Consensus 12 ~igLvvGi~IG~li~R 27 (138)
T COG3105 12 LIGLVVGIIIGALIAR 27 (138)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555555543
No 105
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=61.57 E-value=5.5 Score=24.07 Aligned_cols=17 Identities=24% Similarity=0.657 Sum_probs=10.8
Q ss_pred hhhHHHHHHHHHHHHhc
Q 035751 151 YAFGLVIGLSIGYMVFS 167 (195)
Q Consensus 151 ~~~~~~~~~~~~~~~~~ 167 (195)
+++++++|+++++++.+
T Consensus 3 iilali~G~~~Gff~ar 19 (64)
T PF03672_consen 3 IILALIVGAVIGFFIAR 19 (64)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566677777766654
No 106
>PRK11677 hypothetical protein; Provisional
Probab=60.93 E-value=6.9 Score=27.48 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=20.7
Q ss_pred chhhhhhhhhHHHHHHHHHHHHhcc
Q 035751 144 WKMAKMGYAFGLVIGLSIGYMVFSA 168 (195)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (195)
|.+.++++++|+++|++++-+.-..
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccch
Confidence 6777889999999999999876643
No 107
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=60.30 E-value=6.5 Score=25.62 Aligned_cols=17 Identities=18% Similarity=0.337 Sum_probs=8.4
Q ss_pred cchhhhhhhhhHHHHHH
Q 035751 143 DWKMAKMGYAFGLVIGL 159 (195)
Q Consensus 143 ~~~~~~~~~~~~~~~~~ 159 (195)
.|.+++.|.++.+++.+
T Consensus 41 yWpyLA~GGG~iLilIi 57 (98)
T PF07204_consen 41 YWPYLAAGGGLILILII 57 (98)
T ss_pred hhHHhhccchhhhHHHH
Confidence 36666666444333333
No 108
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=59.70 E-value=5.4 Score=34.62 Aligned_cols=35 Identities=31% Similarity=0.312 Sum_probs=16.3
Q ss_pred CCCcEEEccCCCCCCC--CccccCCCCCCcEEeCCCC
Q 035751 24 KSLKVLNLSHNSLTGN--IPVSFDNMTALESLDLSFN 58 (195)
Q Consensus 24 ~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~l~~N 58 (195)
+.+..+.|++|++... +..--..-|+|..|+|++|
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 4455555666665411 0111122355666666666
No 109
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=58.46 E-value=6.5 Score=31.57 Aligned_cols=8 Identities=25% Similarity=0.534 Sum_probs=3.1
Q ss_pred HHHHHhcc
Q 035751 161 IGYMVFSA 168 (195)
Q Consensus 161 ~~~~~~~~ 168 (195)
+++++++|
T Consensus 274 IIYLILRY 281 (299)
T PF02009_consen 274 IIYLILRY 281 (299)
T ss_pred HHHHHHHH
Confidence 33344443
No 110
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=53.77 E-value=17 Score=26.66 Aligned_cols=10 Identities=20% Similarity=0.471 Sum_probs=3.9
Q ss_pred hhhhhhhHHH
Q 035751 147 AKMGYAFGLV 156 (195)
Q Consensus 147 ~~~~~~~~~~ 156 (195)
++++++++++
T Consensus 80 iivgvi~~Vi 89 (179)
T PF13908_consen 80 IIVGVICGVI 89 (179)
T ss_pred eeeehhhHHH
Confidence 3344443333
No 111
>PF02404 SCF: Stem cell factor; InterPro: IPR003452 Stem cell factor (SCF) is a homodimer involved in hematopoiesis. SCF binds to and activates the SCF receptor (SCFR), a receptor tyrosine kinase. SCF stimulates the proliferation of mast cells and is able to augment the proliferation of both myeloid and lymphoid hematopoietic progenitors in bone marrow culture. It also mediates cell-cell adhesion and acts synergistically with other cytokines. SCF is a type I membrane protein, but is also found in a secretable, soluble form. The crystal structure of human SCF has been resolved and a potential receptor-binding site identified [].; GO: 0005173 stem cell factor receptor binding, 0007155 cell adhesion, 0016020 membrane; PDB: 1EXZ_A 1SCF_D 2E9W_C 2O26_A 2O27_A.
Probab=53.74 E-value=4.3 Score=31.60 Aligned_cols=31 Identities=23% Similarity=0.552 Sum_probs=0.0
Q ss_pred cccchhhhhhhhhHHHHHHHHHHHHhccCcc
Q 035751 141 WFDWKMAKMGYAFGLVIGLSIGYMVFSARKP 171 (195)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (195)
...|..+++...+.+++|+++++++|..+++
T Consensus 212 slq~~~iAL~sl~SLVIGFvlG~l~WKkkq~ 242 (273)
T PF02404_consen 212 SLQWPAIALPSLFSLVIGFVLGALYWKKKQR 242 (273)
T ss_dssp -------------------------------
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3345666666677788888888887654333
No 112
>PRK01844 hypothetical protein; Provisional
Probab=53.73 E-value=11 Score=23.30 Aligned_cols=16 Identities=25% Similarity=0.698 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHHHHhc
Q 035751 152 AFGLVIGLSIGYMVFS 167 (195)
Q Consensus 152 ~~~~~~~~~~~~~~~~ 167 (195)
++++++|+++++++-+
T Consensus 11 I~~li~G~~~Gff~ar 26 (72)
T PRK01844 11 VVALVAGVALGFFIAR 26 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566777777777655
No 113
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.14 E-value=26 Score=24.34 Aligned_cols=28 Identities=29% Similarity=0.565 Sum_probs=22.8
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHhccCc
Q 035751 143 DWKMAKMGYAFGLVIGLSIGYMVFSARK 170 (195)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (195)
.|.+.++|+++|+++|.+++=+.-...+
T Consensus 7 ~W~~a~igLvvGi~IG~li~Rlt~~~~k 34 (138)
T COG3105 7 TWEYALIGLVVGIIIGALIARLTNRKLK 34 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcchhhh
Confidence 4788899999999999999887765433
No 114
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=53.13 E-value=4.5 Score=34.35 Aligned_cols=9 Identities=11% Similarity=0.051 Sum_probs=0.0
Q ss_pred ccCccchhh
Q 035751 167 SARKPQWFA 175 (195)
Q Consensus 167 ~~~~~~w~~ 175 (195)
++++|+++.
T Consensus 378 ~rrrR~~~~ 386 (439)
T PF02480_consen 378 CRRRRRQRD 386 (439)
T ss_dssp ---------
T ss_pred ehhcccccc
Confidence 344545554
No 115
>PF15179 Myc_target_1: Myc target protein 1
Probab=51.82 E-value=14 Score=27.25 Aligned_cols=10 Identities=60% Similarity=0.816 Sum_probs=4.0
Q ss_pred hhhHHHHHHH
Q 035751 151 YAFGLVIGLS 160 (195)
Q Consensus 151 ~~~~~~~~~~ 160 (195)
+++|+++|.+
T Consensus 29 m~iGLviG~l 38 (197)
T PF15179_consen 29 MAIGLVIGAL 38 (197)
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 116
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=51.35 E-value=25 Score=20.99 Aligned_cols=14 Identities=14% Similarity=0.674 Sum_probs=5.9
Q ss_pred hhHHHHHHHHHHHH
Q 035751 152 AFGLVIGLSIGYMV 165 (195)
Q Consensus 152 ~~~~~~~~~~~~~~ 165 (195)
.+++++|+++++++
T Consensus 25 l~~f~~G~llg~l~ 38 (68)
T PF06305_consen 25 LIAFLLGALLGWLL 38 (68)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444433
No 117
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=50.69 E-value=10 Score=31.52 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=9.9
Q ss_pred hhhhhhhhhhhhhHHHhhhh
Q 035751 173 WFARMVEGDHQQMKARRAKR 192 (195)
Q Consensus 173 w~~~~~~~~~~~~~~~~~~~ 192 (195)
+.+++......|...||.++
T Consensus 64 ~~~~~p~~~~~~~~~rr~~~ 83 (398)
T PRK10747 64 RIFRTGARTRGWFVGRKRRR 83 (398)
T ss_pred HHHhcchhhhHHHHHHHHHH
Confidence 34444444556655555443
No 118
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=49.71 E-value=15 Score=23.46 Aligned_cols=30 Identities=13% Similarity=0.099 Sum_probs=13.6
Q ss_pred chhhhhhhhhHHHHHHHHHHHHhccCccch
Q 035751 144 WKMAKMGYAFGLVIGLSIGYMVFSARKPQW 173 (195)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 173 (195)
|..++++.+++++.+.+.+.+++...+-.|
T Consensus 16 ~yyiiA~gga~llL~~v~l~vvL~C~r~~~ 45 (87)
T PF11980_consen 16 WYYIIAMGGALLLLVAVCLGVVLYCHRFHW 45 (87)
T ss_pred eeHHHhhccHHHHHHHHHHHHHHhhhhhcc
Confidence 444445555555555554444443333333
No 119
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=48.03 E-value=12 Score=31.27 Aligned_cols=21 Identities=14% Similarity=0.306 Sum_probs=11.1
Q ss_pred chhhhhhhhhhhhhHHHhhhh
Q 035751 172 QWFARMVEGDHQQMKARRAKR 192 (195)
Q Consensus 172 ~w~~~~~~~~~~~~~~~~~~~ 192 (195)
++.+++......|...||+++
T Consensus 63 ~~~~~~p~~~~~~~~~r~~~k 83 (409)
T TIGR00540 63 RRFFRLGAHSRGWFSGRKRRK 83 (409)
T ss_pred HHHHHccHHHHHHHHHHHHHH
Confidence 344455555666665555443
No 120
>PF02937 COX6C: Cytochrome c oxidase subunit VIc; InterPro: IPR004204 Cytochrome c oxidase, a 13 subunit complex, 1.9.3.1 from EC is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit VIc.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG4_I 2DYS_V 3ASO_I 2EIK_V 2EIM_I 1OCC_V 1V54_V 1OCO_V 3ASN_V 2EIL_I ....
Probab=47.42 E-value=24 Score=21.96 Aligned_cols=12 Identities=25% Similarity=0.512 Sum_probs=5.2
Q ss_pred cCccch--hhhhhh
Q 035751 168 ARKPQW--FARMVE 179 (195)
Q Consensus 168 ~~~~~w--~~~~~~ 179 (195)
-|++.| |++.+|
T Consensus 42 pRKk~YadFYknYD 55 (73)
T PF02937_consen 42 PRKKAYADFYKNYD 55 (73)
T ss_dssp HHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHccC
Confidence 355555 555555
No 121
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=47.26 E-value=1.2 Score=38.16 Aligned_cols=35 Identities=29% Similarity=0.334 Sum_probs=18.5
Q ss_pred cEEEecCCcCCCCcc----hhhcCCCCCcEEEccCCCCC
Q 035751 3 RATDLSSNRFCGEIP----KVLGNFKSLKVLNLSHNSLT 37 (195)
Q Consensus 3 ~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~N~l~ 37 (195)
..|.|.+|.+..... ..+.....|+.|++++|.+.
T Consensus 90 ~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 90 LHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence 345555565553322 23445566666666666665
No 122
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.18 E-value=16 Score=22.44 Aligned_cols=19 Identities=21% Similarity=0.413 Sum_probs=13.9
Q ss_pred hhhhhHHHHHHHHHHHHhc
Q 035751 149 MGYAFGLVIGLSIGYMVFS 167 (195)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~ 167 (195)
+.+++++++|++.++++.+
T Consensus 8 l~ivl~ll~G~~~G~fiar 26 (71)
T COG3763 8 LLIVLALLAGLIGGFFIAR 26 (71)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6667777888888877654
No 123
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=47.11 E-value=22 Score=25.26 Aligned_cols=14 Identities=21% Similarity=0.133 Sum_probs=6.2
Q ss_pred HHHHHHhccCccch
Q 035751 160 SIGYMVFSARKPQW 173 (195)
Q Consensus 160 ~~~~~~~~~~~~~w 173 (195)
++.+.+|-+|||+-
T Consensus 46 ivli~lcssRKkKa 59 (189)
T PF05568_consen 46 IVLIYLCSSRKKKA 59 (189)
T ss_pred HHHHHHHhhhhHHH
Confidence 33334444455543
No 124
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=47.11 E-value=20 Score=27.19 Aligned_cols=22 Identities=14% Similarity=0.117 Sum_probs=8.9
Q ss_pred chhhhhhhhhHHHHHHHHHHHH
Q 035751 144 WKMAKMGYAFGLVIGLSIGYMV 165 (195)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~ 165 (195)
+.+.+++.++++++.+++++++
T Consensus 39 I~iaiVAG~~tVILVI~i~v~v 60 (221)
T PF08374_consen 39 IMIAIVAGIMTVILVIFIVVLV 60 (221)
T ss_pred eeeeeecchhhhHHHHHHHHHH
Confidence 3344444444444443333333
No 125
>PF11240 DUF3042: Protein of unknown function (DUF3042); InterPro: IPR021402 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=46.91 E-value=34 Score=19.95 Aligned_cols=12 Identities=25% Similarity=0.534 Sum_probs=5.5
Q ss_pred hhhhHHHHHHHH
Q 035751 150 GYAFGLVIGLSI 161 (195)
Q Consensus 150 ~~~~~~~~~~~~ 161 (195)
|+++|.+..+..
T Consensus 7 G~l~G~~~t~aa 18 (54)
T PF11240_consen 7 GFLTGVAATLAA 18 (54)
T ss_pred hHHHhHHHHHHH
Confidence 444555444433
No 126
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=46.66 E-value=10 Score=28.19 Aligned_cols=20 Identities=15% Similarity=0.057 Sum_probs=7.8
Q ss_pred hhhhhhhhHHHHHHHHHHHH
Q 035751 146 MAKMGYAFGLVIGLSIGYMV 165 (195)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~ 165 (195)
.+++++-+++++.+++++++
T Consensus 159 ~laI~lPvvv~~~~~~~~~~ 178 (189)
T PF14610_consen 159 ALAIALPVVVVVLALIMYGF 178 (189)
T ss_pred eEEEEccHHHHHHHHHHHhh
Confidence 33344444443333333333
No 127
>PRK00523 hypothetical protein; Provisional
Probab=46.39 E-value=22 Score=21.99 Aligned_cols=16 Identities=38% Similarity=0.465 Sum_probs=9.7
Q ss_pred hhHHHHHHHHHHHHhc
Q 035751 152 AFGLVIGLSIGYMVFS 167 (195)
Q Consensus 152 ~~~~~~~~~~~~~~~~ 167 (195)
++++++|+++++++-+
T Consensus 12 i~~li~G~~~Gffiar 27 (72)
T PRK00523 12 IPLLIVGGIIGYFVSK 27 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3446666666666654
No 128
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=45.37 E-value=5.9 Score=26.80 Aligned_cols=15 Identities=0% Similarity=0.244 Sum_probs=0.0
Q ss_pred HhccCccchhhhhhh
Q 035751 165 VFSARKPQWFARMVE 179 (195)
Q Consensus 165 ~~~~~~~~w~~~~~~ 179 (195)
+|+.+||.=|..+.+
T Consensus 44 CWYckRRSGYk~L~~ 58 (118)
T PF14991_consen 44 CWYCKRRSGYKTLRD 58 (118)
T ss_dssp ---------------
T ss_pred heeeeecchhhhhhh
Confidence 333355554555544
No 129
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=44.72 E-value=15 Score=26.89 Aligned_cols=29 Identities=14% Similarity=0.154 Sum_probs=14.8
Q ss_pred hhhhhHHHHHHH-HHHHHhccCccchhhhh
Q 035751 149 MGYAFGLVIGLS-IGYMVFSARKPQWFARM 177 (195)
Q Consensus 149 ~~~~~~~~~~~~-~~~~~~~~~~~~w~~~~ 177 (195)
.+|+.++++.++ .+.-++-|.+|+++|+.
T Consensus 118 aGIvsav~valvGAvsSyiaYqkKKlCF~i 147 (169)
T PF12301_consen 118 AGIVSAVVVALVGAVSSYIAYQKKKLCFKI 147 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccceee
Confidence 344444433333 22334455677888855
No 130
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=44.38 E-value=11 Score=20.97 Aligned_cols=15 Identities=27% Similarity=0.658 Sum_probs=12.2
Q ss_pred cCccchhhhhhhhhh
Q 035751 168 ARKPQWFARMVEGDH 182 (195)
Q Consensus 168 ~~~~~w~~~~~~~~~ 182 (195)
-+.+-||..||++.+
T Consensus 23 d~~kDWYktMFkqIH 37 (47)
T PF02208_consen 23 DRPKDWYKTMFKQIH 37 (47)
T ss_pred cchhHHHHHHHHHHH
Confidence 367789999998766
No 131
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=44.08 E-value=13 Score=31.02 Aligned_cols=66 Identities=24% Similarity=0.138 Sum_probs=41.7
Q ss_pred hhhcCCCCCcEEEccCC--CCCCC---CccccCCCCCCcEEeCCCCc-CCCCCchhhh-cCCCccEEEcccCc
Q 035751 18 KVLGNFKSLKVLNLSHN--SLTGN---IPVSFDNMTALESLDLSFNK-LEGRIPKQLL-SVTTLALLNLSYNR 83 (195)
Q Consensus 18 ~~~~~l~~L~~L~Ls~N--~l~~~---~p~~~~~l~~L~~L~l~~N~-l~~~~p~~~~-~l~~L~~L~l~~N~ 83 (195)
.....+++|+.|+++++ .+... .......+.+|+.|+++... ++...-..+. .+++|+.|.+.++.
T Consensus 208 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 208 ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCS 280 (482)
T ss_pred HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCC
Confidence 34567788999999873 11111 11234556888999999887 5533333333 37889999876665
No 132
>smart00459 Sorb Sorbin homologous domain. First found in the peptide hormone sorbin and later in the ponsin/ArgBP2/vinexin family of proteins.
Probab=43.13 E-value=12 Score=21.30 Aligned_cols=14 Identities=29% Similarity=0.707 Sum_probs=10.6
Q ss_pred Cccchhhhhhhhhh
Q 035751 169 RKPQWFARMVEGDH 182 (195)
Q Consensus 169 ~~~~w~~~~~~~~~ 182 (195)
+-+.||.+||++.+
T Consensus 27 ~~~dWYk~MfkqiH 40 (50)
T smart00459 27 RPKDWYRTMFKQIH 40 (50)
T ss_pred cHHHHHHHHHHHHH
Confidence 33459999998776
No 133
>PHA03164 hypothetical protein; Provisional
Probab=42.57 E-value=21 Score=22.25 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=12.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHhc
Q 035751 146 MAKMGYAFGLVIGLSIGYMVFS 167 (195)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~ 167 (195)
.+..|++++++..+++++.+|.
T Consensus 61 lvLtgLaIamILfiifvlyvFn 82 (88)
T PHA03164 61 LVLTGLAIAMILFIIFVLYVFN 82 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHhee
Confidence 3445566666666655555554
No 134
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=42.13 E-value=22 Score=22.92 Aligned_cols=16 Identities=31% Similarity=0.386 Sum_probs=7.4
Q ss_pred hhHHHHHHHHHHHHhc
Q 035751 152 AFGLVIGLSIGYMVFS 167 (195)
Q Consensus 152 ~~~~~~~~~~~~~~~~ 167 (195)
++++.+.+++++++++
T Consensus 40 I~~iFil~VilwfvCC 55 (94)
T PF05393_consen 40 ICGIFILLVILWFVCC 55 (94)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444455555444
No 135
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=41.06 E-value=57 Score=21.44 Aligned_cols=14 Identities=21% Similarity=0.517 Sum_probs=7.5
Q ss_pred hhhhhHHHhhhhcc
Q 035751 181 DHQQMKARRAKRRQ 194 (195)
Q Consensus 181 ~~~~~~~~~~~~~~ 194 (195)
.....-++|.++.|
T Consensus 51 ER~K~E~~~q~r~r 64 (121)
T PF10669_consen 51 ERSKKEEKRQKRNR 64 (121)
T ss_pred HHHHHHHHHHHHhh
Confidence 44455566655543
No 136
>PTZ00370 STEVOR; Provisional
Probab=39.82 E-value=38 Score=27.02 Aligned_cols=12 Identities=17% Similarity=0.443 Sum_probs=6.5
Q ss_pred chhhhhhhhhhh
Q 035751 172 QWFARMVEGDHQ 183 (195)
Q Consensus 172 ~w~~~~~~~~~~ 183 (195)
-|..|-.++.|-
T Consensus 276 iwlyrrRK~swk 287 (296)
T PTZ00370 276 IWLYRRRKNSWK 287 (296)
T ss_pred HHHHHhhcchhH
Confidence 366555555553
No 137
>PTZ00046 rifin; Provisional
Probab=39.71 E-value=31 Score=28.44 Aligned_cols=13 Identities=23% Similarity=0.516 Sum_probs=6.1
Q ss_pred HHHHHHhccCccc
Q 035751 160 SIGYMVFSARKPQ 172 (195)
Q Consensus 160 ~~~~~~~~~~~~~ 172 (195)
++++++++|||++
T Consensus 332 vIIYLILRYRRKK 344 (358)
T PTZ00046 332 VIIYLILRYRRKK 344 (358)
T ss_pred HHHHHHHHhhhcc
Confidence 3444455555444
No 138
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=39.35 E-value=45 Score=20.47 Aligned_cols=19 Identities=21% Similarity=0.510 Sum_probs=13.5
Q ss_pred hhhhhHHHHHHHHHHHHhc
Q 035751 149 MGYAFGLVIGLSIGYMVFS 167 (195)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~ 167 (195)
.|+++|.++|+++++++-=
T Consensus 3 ~g~l~Ga~~Ga~~glL~aP 21 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGLLFAP 21 (74)
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 5677777777777777654
No 139
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=39.31 E-value=9.9 Score=26.19 Aligned_cols=20 Identities=20% Similarity=0.423 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhccCccc
Q 035751 153 FGLVIGLSIGYMVFSARKPQ 172 (195)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~ 172 (195)
+|+.+.+++++++.+-++|+
T Consensus 3 ag~a~~~~lgYciYFD~KRR 22 (121)
T PF02064_consen 3 AGVAAAAFLGYCIYFDYKRR 22 (121)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHhhcccccc
Confidence 34444455556655534433
No 140
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=39.29 E-value=32 Score=19.78 Aligned_cols=22 Identities=14% Similarity=0.051 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHhccCccchh
Q 035751 153 FGLVIGLSIGYMVFSARKPQWF 174 (195)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~w~ 174 (195)
+++++++++++.+++..|...|
T Consensus 10 iSl~l~~~~l~~f~Wavk~GQf 31 (51)
T TIGR00847 10 ISLLLGGVGLVAFLWSLKSGQY 31 (51)
T ss_pred HHHHHHHHHHHHHHHHHccCCC
Confidence 3444444444444443343433
No 141
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=39.10 E-value=32 Score=28.29 Aligned_cols=13 Identities=23% Similarity=0.516 Sum_probs=6.0
Q ss_pred HHHHHHhccCccc
Q 035751 160 SIGYMVFSARKPQ 172 (195)
Q Consensus 160 ~~~~~~~~~~~~~ 172 (195)
++++++++|||++
T Consensus 327 vIIYLILRYRRKK 339 (353)
T TIGR01477 327 VIIYLILRYRRKK 339 (353)
T ss_pred HHHHHHHHhhhcc
Confidence 3444455555443
No 142
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=39.07 E-value=33 Score=21.79 Aligned_cols=6 Identities=33% Similarity=0.689 Sum_probs=2.3
Q ss_pred HHHHHh
Q 035751 161 IGYMVF 166 (195)
Q Consensus 161 ~~~~~~ 166 (195)
+++++|
T Consensus 18 iaIvvW 23 (81)
T PF00558_consen 18 IAIVVW 23 (81)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333343
No 143
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=38.84 E-value=27 Score=29.27 Aligned_cols=18 Identities=22% Similarity=0.567 Sum_probs=8.3
Q ss_pred hhhhhHHHHHHHHHHHHh
Q 035751 149 MGYAFGLVIGLSIGYMVF 166 (195)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~ 166 (195)
+++++++|||-+|+|+.|
T Consensus 372 IsvavvvvVgglvGfLcW 389 (397)
T PF03302_consen 372 ISVAVVVVVGGLVGFLCW 389 (397)
T ss_pred eeehhHHHHHHHHHHHhh
Confidence 334444445545555443
No 144
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=38.80 E-value=56 Score=18.10 Aligned_cols=7 Identities=14% Similarity=0.396 Sum_probs=2.6
Q ss_pred hhhhHHH
Q 035751 150 GYAFGLV 156 (195)
Q Consensus 150 ~~~~~~~ 156 (195)
+.+++++
T Consensus 10 sYg~t~~ 16 (46)
T PF04995_consen 10 SYGVTAL 16 (46)
T ss_pred HHHHHHH
Confidence 3333333
No 145
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=38.62 E-value=21 Score=22.83 Aligned_cols=7 Identities=14% Similarity=0.392 Sum_probs=2.8
Q ss_pred HHHHHHh
Q 035751 160 SIGYMVF 166 (195)
Q Consensus 160 ~~~~~~~ 166 (195)
+.+++++
T Consensus 32 isGl~l~ 38 (88)
T PF13703_consen 32 ISGLYLW 38 (88)
T ss_pred HHHHHHh
Confidence 3344444
No 146
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=37.34 E-value=27 Score=16.44 Aligned_cols=12 Identities=42% Similarity=0.346 Sum_probs=6.9
Q ss_pred CCCcEEeCCCCc
Q 035751 48 TALESLDLSFNK 59 (195)
Q Consensus 48 ~~L~~L~l~~N~ 59 (195)
++|+.|+++++.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 456666666553
No 147
>PRK10132 hypothetical protein; Provisional
Probab=37.32 E-value=35 Score=23.01 Aligned_cols=12 Identities=25% Similarity=0.523 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHh
Q 035751 155 LVIGLSIGYMVF 166 (195)
Q Consensus 155 ~~~~~~~~~~~~ 166 (195)
..+|+++++++.
T Consensus 94 agvG~llG~Ll~ 105 (108)
T PRK10132 94 AAVGIFIGALLS 105 (108)
T ss_pred HHHHHHHHHHHh
Confidence 334444444443
No 148
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=37.12 E-value=36 Score=18.98 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHhccCccchh
Q 035751 153 FGLVIGLSIGYMVFSARKPQWF 174 (195)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~w~ 174 (195)
++++++++++..+++..|...|
T Consensus 9 ~sl~l~~~~l~~f~Wavk~GQf 30 (45)
T PF03597_consen 9 VSLILGLIALAAFLWAVKSGQF 30 (45)
T ss_pred HHHHHHHHHHHHHHHHHccCCC
Confidence 3444444444444433343333
No 149
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=35.88 E-value=36 Score=21.35 Aligned_cols=18 Identities=22% Similarity=0.695 Sum_probs=8.4
Q ss_pred hhhhhhhhhHHHHHHHHH
Q 035751 145 KMAKMGYAFGLVIGLSIG 162 (195)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~ 162 (195)
.++++|+++|++++++++
T Consensus 60 lil~l~~~~Gl~lgi~~~ 77 (82)
T PF13807_consen 60 LILALGLFLGLILGIGLA 77 (82)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555444443
No 150
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=34.60 E-value=38 Score=20.01 Aligned_cols=25 Identities=12% Similarity=0.037 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHHhccCccchhhh
Q 035751 152 AFGLVIGLSIGYMVFSARKPQWFAR 176 (195)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~w~~~ 176 (195)
.++++++++++..+++..|...|--
T Consensus 9 pvsi~l~~v~l~~flWavksgQyDD 33 (58)
T COG3197 9 PVSILLGAVGLGAFLWAVKSGQYDD 33 (58)
T ss_pred HHHHHHHHHHHHHHHHhcccCCccc
Confidence 3445555555555555555555443
No 151
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=34.51 E-value=13 Score=26.87 Aligned_cols=14 Identities=14% Similarity=0.553 Sum_probs=0.0
Q ss_pred hhhhhhhhHHHHHH
Q 035751 146 MAKMGYAFGLVIGL 159 (195)
Q Consensus 146 ~~~~~~~~~~~~~~ 159 (195)
...+||++|+++++
T Consensus 129 ~tLVGIIVGVLlaI 142 (162)
T PF05808_consen 129 VTLVGIIVGVLLAI 142 (162)
T ss_dssp --------------
T ss_pred eeeeeehhhHHHHH
Confidence 34455555555444
No 152
>PF10725 DUF2517: Protein of unknown function (DUF2517); InterPro: IPR019663 This entry represents proteins conserved in Proteobacteria and includes the predicted protein YbfA. The function is not known.
Probab=34.00 E-value=35 Score=20.28 Aligned_cols=31 Identities=10% Similarity=0.056 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHhccCccchhhhhhhhhh
Q 035751 152 AFGLVIGLSIGYMVFSARKPQWFARMVEGDH 182 (195)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 182 (195)
++++++|++..-+.+++..|..+.-...+.|
T Consensus 15 ~~vv~~GvlAlPvMLf~~dRArfYSyLhrvW 45 (63)
T PF10725_consen 15 IFVVLAGVLALPVMLFRSDRARFYSYLHRVW 45 (63)
T ss_pred HHHHHHHHhhhheeeeecchhHHHHHHHHHH
Confidence 3455566655555555455554444444444
No 153
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=33.53 E-value=54 Score=29.28 Aligned_cols=32 Identities=19% Similarity=0.047 Sum_probs=12.1
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHhccCccchh
Q 035751 143 DWKMAKMGYAFGLVIGLSIGYMVFSARKPQWF 174 (195)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 174 (195)
.|+++++.+.+++++.+++++.+...++.+--
T Consensus 269 lWII~gVlvPv~vV~~Iiiil~~~LCRk~K~e 300 (684)
T PF12877_consen 269 LWIIAGVLVPVLVVLLIIIILYWKLCRKNKLE 300 (684)
T ss_pred eEEEehHhHHHHHHHHHHHHHHHHHhcccccC
Confidence 35544443333333333333322233444443
No 154
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=32.81 E-value=95 Score=23.15 Aligned_cols=12 Identities=33% Similarity=0.108 Sum_probs=5.4
Q ss_pred cccccchhhhhh
Q 035751 139 TSWFDWKMAKMG 150 (195)
Q Consensus 139 ~~~~~~~~~~~~ 150 (195)
.+.|+...++.|
T Consensus 155 ~s~FD~~SFiGG 166 (186)
T PF05283_consen 155 KSTFDAASFIGG 166 (186)
T ss_pred CCCCchhhhhhH
Confidence 345554444333
No 155
>cd00927 Cyt_c_Oxidase_VIc Cytochrome c oxidase subunit VIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIc subunit is found only in eukaryotes and its specific function remains unclear. It has been reported that the relative concentrations of some nuclear encoded CcO subunits, including subunit VIc, compared to those of the mitochondrial encoded subunits, are altered significantly during the progression of prostate cancer.
Probab=32.71 E-value=67 Score=19.83 Aligned_cols=6 Identities=17% Similarity=0.473 Sum_probs=2.4
Q ss_pred hhhhhh
Q 035751 174 FARMVE 179 (195)
Q Consensus 174 ~~~~~~ 179 (195)
+++.+|
T Consensus 48 FYknYD 53 (70)
T cd00927 48 FYKTYD 53 (70)
T ss_pred HHHccC
Confidence 334443
No 156
>PF11353 DUF3153: Protein of unknown function (DUF3153); InterPro: IPR021499 This family of proteins with unknown function appear to be restricted to Cyanobacteria. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=31.81 E-value=38 Score=25.58 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=13.0
Q ss_pred chhhhhhhhhHHHHHHHHHHHHhcc
Q 035751 144 WKMAKMGYAFGLVIGLSIGYMVFSA 168 (195)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (195)
|..-.+|++..++++++++.++.++
T Consensus 180 w~pn~lgiG~v~I~~l~~~~~~l~~ 204 (209)
T PF11353_consen 180 WVPNPLGIGTVLIVLLILLGFLLRR 204 (209)
T ss_pred EeccHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555555555543
No 157
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=30.49 E-value=1.4e+02 Score=20.26 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=8.7
Q ss_pred hhhhhhhHHHHHHHHHHH
Q 035751 147 AKMGYAFGLVIGLSIGYM 164 (195)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~ 164 (195)
..+|+++++++.++++.+
T Consensus 63 ffvglii~LivSLaLVsF 80 (128)
T PF15145_consen 63 FFVGLIIVLIVSLALVSF 80 (128)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 334555555555444443
No 158
>PRK10404 hypothetical protein; Provisional
Probab=30.40 E-value=41 Score=22.35 Aligned_cols=9 Identities=33% Similarity=0.988 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 035751 157 IGLSIGYMV 165 (195)
Q Consensus 157 ~~~~~~~~~ 165 (195)
+|+++++++
T Consensus 90 vGlllG~Ll 98 (101)
T PRK10404 90 VGLVLGLLL 98 (101)
T ss_pred HHHHHHHHH
Confidence 444444443
No 159
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=30.04 E-value=48 Score=26.43 Aligned_cols=7 Identities=29% Similarity=0.771 Sum_probs=2.8
Q ss_pred hhhhhhh
Q 035751 173 WFARMVE 179 (195)
Q Consensus 173 w~~~~~~ 179 (195)
|..|-.+
T Consensus 281 WlyrrRK 287 (295)
T TIGR01478 281 WLYRRRK 287 (295)
T ss_pred HHHHhhc
Confidence 4444333
No 160
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=29.30 E-value=46 Score=22.23 Aligned_cols=17 Identities=35% Similarity=0.731 Sum_probs=8.4
Q ss_pred chhhhhhhhhHHHHHHH
Q 035751 144 WKMAKMGYAFGLVIGLS 160 (195)
Q Consensus 144 ~~~~~~~~~~~~~~~~~ 160 (195)
|..+.++.++|+++|++
T Consensus 84 Wq~VGvaAaVGlllGlL 100 (104)
T COG4575 84 WQGVGVAAAVGLLLGLL 100 (104)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 44444555555555543
No 161
>PF15179 Myc_target_1: Myc target protein 1
Probab=28.92 E-value=47 Score=24.59 Aligned_cols=25 Identities=32% Similarity=0.861 Sum_probs=18.0
Q ss_pred ccchhhhhhhhhHHHHHHHHHHHHh
Q 035751 142 FDWKMAKMGYAFGLVIGLSIGYMVF 166 (195)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (195)
++|.-++++.-+.+++|++++.++|
T Consensus 16 f~~~~lIlaF~vSm~iGLviG~li~ 40 (197)
T PF15179_consen 16 FDWEDLILAFCVSMAIGLVIGALIW 40 (197)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4455566777778888888888766
No 162
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=28.91 E-value=36 Score=28.67 Aligned_cols=25 Identities=24% Similarity=0.646 Sum_probs=19.6
Q ss_pred cchhhhhhhhhhhhhHHHhhhhccC
Q 035751 171 PQWFARMVEGDHQQMKARRAKRRQR 195 (195)
Q Consensus 171 ~~w~~~~~~~~~~~~~~~~~~~~~~ 195 (195)
--|+.+|.+...+.|+-+|+++++|
T Consensus 159 DLWKekmLqdted~~kekrk~k~~~ 183 (518)
T KOG1830|consen 159 DLWKEKMLQDTEDKMKEKRKQKQKR 183 (518)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhccc
Confidence 3589999998888888888777543
No 163
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=27.87 E-value=1.1e+02 Score=20.30 Aligned_cols=12 Identities=17% Similarity=0.542 Sum_probs=4.9
Q ss_pred cchhhhhhhhhHH
Q 035751 143 DWKMAKMGYAFGL 155 (195)
Q Consensus 143 ~~~~~~~~~~~~~ 155 (195)
.|.++ +|+++++
T Consensus 16 sW~~L-VGVv~~a 27 (102)
T PF15176_consen 16 SWPFL-VGVVVTA 27 (102)
T ss_pred ccHhH-HHHHHHH
Confidence 34443 4443333
No 164
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=27.79 E-value=60 Score=20.30 Aligned_cols=21 Identities=24% Similarity=0.650 Sum_probs=12.6
Q ss_pred hhhHHHHHHHHHHHHhccCccch
Q 035751 151 YAFGLVIGLSIGYMVFSARKPQW 173 (195)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~w 173 (195)
.+.|+++|+++.+++|++ |.|
T Consensus 33 ~~~G~~~G~~~s~l~frr--R~~ 53 (75)
T PF04418_consen 33 TGLGFGIGVVFSLLFFRR--RAW 53 (75)
T ss_pred HhhhhhHHHHHHHHHHcc--chH
Confidence 345666677666666653 455
No 165
>PHA03265 envelope glycoprotein D; Provisional
Probab=27.37 E-value=49 Score=27.21 Aligned_cols=34 Identities=6% Similarity=0.132 Sum_probs=19.5
Q ss_pred chhhhhhhhhHHHHHHHHHHHHhccCccchhhhh
Q 035751 144 WKMAKMGYAFGLVIGLSIGYMVFSARKPQWFARM 177 (195)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 177 (195)
...+.+.++.+++..+++++++++.++|+-..+.
T Consensus 347 ~~~~g~~ig~~i~glv~vg~il~~~~rr~k~~~k 380 (402)
T PHA03265 347 STFVGISVGLGIAGLVLVGVILYVCLRRKKELKK 380 (402)
T ss_pred CcccceEEccchhhhhhhhHHHHHHhhhhhhhhh
Confidence 3344444455555556677778887666644443
No 166
>PHA03237 envelope glycoprotein M; Provisional
Probab=26.79 E-value=97 Score=26.30 Aligned_cols=6 Identities=33% Similarity=0.373 Sum_probs=2.3
Q ss_pred hhhhhh
Q 035751 174 FARMVE 179 (195)
Q Consensus 174 ~~~~~~ 179 (195)
++..++
T Consensus 361 fy~~v~ 366 (424)
T PHA03237 361 FYGRVK 366 (424)
T ss_pred HHHHHH
Confidence 333333
No 167
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=26.51 E-value=52 Score=26.49 Aligned_cols=26 Identities=12% Similarity=0.160 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHHHhccCccchhhhh
Q 035751 152 AFGLVIGLSIGYMVFSARKPQWFARM 177 (195)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~w~~~~ 177 (195)
++++++.+++++++..-+|.|...+|
T Consensus 262 iiaIliIVLIMvIIYLILRYRRKKKm 287 (299)
T PF02009_consen 262 IIAILIIVLIMVIIYLILRYRRKKKM 287 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33344444444455443444433334
No 168
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=26.44 E-value=22 Score=25.76 Aligned_cols=24 Identities=13% Similarity=-0.063 Sum_probs=0.0
Q ss_pred chhhhhhhhhHHHHHHHHHHHHhc
Q 035751 144 WKMAKMGYAFGLVIGLSIGYMVFS 167 (195)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~ 167 (195)
..-+++|+.+++.+...+++++++
T Consensus 131 LVGIIVGVLlaIG~igGIIivvvR 154 (162)
T PF05808_consen 131 LVGIIVGVLLAIGFIGGIIIVVVR 154 (162)
T ss_dssp ------------------------
T ss_pred eeeehhhHHHHHHHHhheeeEEee
Confidence 444555655555555444444443
No 169
>PF05795 Plasmodium_Vir: Plasmodium vivax Vir protein; InterPro: IPR008780 This family consists of several Vir proteins specific to the genus Plasmodium and Plasmodium vivax in particular. The vir genes are present at about 600-1,000 copies per haploid genome and encode proteins that are immunovariant in natural infections, indicating that they may have a functional role in establishing chronic infection through antigenic variation [].
Probab=25.86 E-value=94 Score=24.94 Aligned_cols=10 Identities=10% Similarity=0.713 Sum_probs=3.7
Q ss_pred HHHHHHHHHh
Q 035751 157 IGLSIGYMVF 166 (195)
Q Consensus 157 ~~~~~~~~~~ 166 (195)
+|+.++++++
T Consensus 292 ~G~~~~~f~L 301 (354)
T PF05795_consen 292 LGIPLIFFLL 301 (354)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 170
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=25.53 E-value=54 Score=24.79 Aligned_cols=18 Identities=11% Similarity=0.456 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhccCccch
Q 035751 156 VIGLSIGYMVFSARKPQW 173 (195)
Q Consensus 156 ~~~~~~~~~~~~~~~~~w 173 (195)
++.++++..+++..||.|
T Consensus 113 Lla~~~~~~Y~~~~Rrs~ 130 (202)
T PF06365_consen 113 LLAILLGAGYCCHQRRSW 130 (202)
T ss_pred HHHHHHHHHHHhhhhccC
Confidence 333333333444455566
No 171
>PF15069 FAM163: FAM163 family
Probab=23.97 E-value=42 Score=23.77 Aligned_cols=18 Identities=28% Similarity=0.176 Sum_probs=6.8
Q ss_pred hhhhhHHHHHHHHHHHHh
Q 035751 149 MGYAFGLVIGLSIGYMVF 166 (195)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~ 166 (195)
.|.+.+.++.+.|+++++
T Consensus 9 tGgILAtVILLcIIaVLC 26 (143)
T PF15069_consen 9 TGGILATVILLCIIAVLC 26 (143)
T ss_pred echHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 172
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=23.94 E-value=49 Score=26.37 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=10.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHh
Q 035751 146 MAKMGYAFGLVIGLSIGYMVF 166 (195)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~ 166 (195)
.+.+++++|+++.++++.+++
T Consensus 231 lIslAiALG~v~ll~l~Gii~ 251 (281)
T PF12768_consen 231 LISLAIALGTVFLLVLIGIIL 251 (281)
T ss_pred EEehHHHHHHHHHHHHHHHHH
Confidence 344555555555554444443
No 173
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=23.79 E-value=96 Score=22.81 Aligned_cols=32 Identities=25% Similarity=0.456 Sum_probs=19.0
Q ss_pred hhhHHHHHHHHHHHHhccCccchhhhhhhhhh
Q 035751 151 YAFGLVIGLSIGYMVFSARKPQWFARMVEGDH 182 (195)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 182 (195)
.++|.++|-+++-.+|.-.+|++...|-.++.
T Consensus 88 g~lG~L~GP~~G~~vf~l~~r~~~~~~~~Ke~ 119 (173)
T PF08566_consen 88 GALGWLVGPSLGNQVFRLLNRKYLKQMDAKEK 119 (173)
T ss_pred HHHHHHhcchHHHHHHHHHhHHHHHHHHHHHH
Confidence 34455666667777776666666655544433
No 174
>PF10144 SMP_2: Bacterial virulence factor haemolysin; InterPro: IPR019305 This entry represents a group of bacterial proteins that are membrane proteins that effect the expression of haemolysin under anaerobic conditions [].
Probab=23.08 E-value=72 Score=24.27 Aligned_cols=24 Identities=21% Similarity=0.576 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHhccCccchhh
Q 035751 152 AFGLVIGLSIGYMVFSARKPQWFA 175 (195)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~w~~ 175 (195)
.+++++|+++...+.++++.+|..
T Consensus 170 llal~iG~LLa~~l~r~rr~r~~~ 193 (210)
T PF10144_consen 170 LLALLIGVLLARSLLRKRRSRWQQ 193 (210)
T ss_pred HHHHHHHHHHHHHHhhhccccccc
Confidence 344555666666666656566643
No 175
>PF14143 YrhC: YrhC-like protein
Probab=22.77 E-value=59 Score=20.19 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHhccCccchhhhh
Q 035751 153 FGLVIGLSIGYMVFSARKPQWFARM 177 (195)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~w~~~~ 177 (195)
.+.+++..++.++|.++-+.+..++
T Consensus 44 ~~~~~~~l~~a~~f~~rs~~~~~~L 68 (72)
T PF14143_consen 44 MGAICIFLAGAFLFFRRSKKYQKKL 68 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444555543444433333
No 176
>PF02936 COX4: Cytochrome c oxidase subunit IV; InterPro: IPR004203 Cytochrome c oxidase, a 13 sub-unit complex (1.9.3.1 from EC) is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium discoideum (Slime mould) member of this family is called COX VI. The Saccharomyces cerevisiae protein YGX6_YEAST appears to be the yeast COX IV subunit.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABK_Q 3AG1_Q 3ASN_Q 1OCZ_D 2EIN_Q 2OCC_D 2YBB_O 3AG3_D 1OCO_Q 1V55_Q ....
Probab=22.33 E-value=1.5e+02 Score=20.96 Aligned_cols=17 Identities=12% Similarity=0.159 Sum_probs=8.9
Q ss_pred hhhhhhhhhhHHHhhhh
Q 035751 176 RMVEGDHQQMKARRAKR 192 (195)
Q Consensus 176 ~~~~~~~~~~~~~~~~~ 192 (195)
+-+.++|+....+|-..
T Consensus 105 ~T~~~Ew~ea~~~~m~~ 121 (142)
T PF02936_consen 105 HTFSKEWQEAQNERMLD 121 (142)
T ss_dssp GGGSHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 34445666655555443
No 177
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=21.49 E-value=73 Score=20.51 Aligned_cols=9 Identities=22% Similarity=0.873 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 035751 157 IGLSIGYMV 165 (195)
Q Consensus 157 ~~~~~~~~~ 165 (195)
+|+++++++
T Consensus 83 vG~llG~Ll 91 (94)
T PF05957_consen 83 VGFLLGLLL 91 (94)
T ss_pred HHHHHHHHH
Confidence 444444433
No 178
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=21.01 E-value=78 Score=24.25 Aligned_cols=17 Identities=12% Similarity=0.319 Sum_probs=6.3
Q ss_pred hhhhHHHHHHHHHHHHh
Q 035751 150 GYAFGLVIGLSIGYMVF 166 (195)
Q Consensus 150 ~~~~~~~~~~~~~~~~~ 166 (195)
+|++++++.+++++.+|
T Consensus 19 aI~IV~lLIiiva~~lf 35 (217)
T PF07423_consen 19 AIGIVSLLIIIVAYQLF 35 (217)
T ss_pred HHHHHHHHHHHHhhhhe
Confidence 33333333333333333
No 179
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=20.88 E-value=1.4e+02 Score=21.86 Aligned_cols=8 Identities=0% Similarity=0.322 Sum_probs=4.3
Q ss_pred Cccchhhh
Q 035751 169 RKPQWFAR 176 (195)
Q Consensus 169 ~~~~w~~~ 176 (195)
+.++|+..
T Consensus 71 k~~p~m~E 78 (165)
T PF11286_consen 71 KTHPFMTE 78 (165)
T ss_pred ccChHHHH
Confidence 55666443
No 180
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=20.43 E-value=82 Score=22.43 Aligned_cols=11 Identities=18% Similarity=0.410 Sum_probs=4.1
Q ss_pred hhHHHHHHHHH
Q 035751 152 AFGLVIGLSIG 162 (195)
Q Consensus 152 ~~~~~~~~~~~ 162 (195)
++|+++++.++
T Consensus 125 i~g~ll~i~~g 135 (145)
T PF10661_consen 125 IGGILLAICGG 135 (145)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
Done!