Query 035751
Match_columns 195
No_of_seqs 329 out of 2462
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 09:54:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035751.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035751hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.9 6.2E-22 2.1E-26 174.3 10.7 120 1-121 633-752 (768)
2 2v70_A SLIT-2, SLIT homolog 2 99.7 2E-17 6.7E-22 125.1 10.1 113 1-118 58-170 (220)
3 1ogq_A PGIP-2, polygalacturona 99.7 8.4E-18 2.9E-22 133.5 8.4 114 2-117 199-312 (313)
4 2wfh_A SLIT homolog 2 protein 99.7 3.2E-17 1.1E-21 121.6 10.9 112 1-118 32-143 (193)
5 2v9t_B SLIT homolog 2 protein 99.7 4.2E-17 1.4E-21 123.3 10.5 86 2-87 58-143 (220)
6 1w8a_A SLIT protein; signaling 99.7 3.2E-17 1.1E-21 121.4 9.5 113 1-118 30-143 (192)
7 3j0a_A TOLL-like receptor 5; m 99.7 6.3E-18 2.2E-22 150.2 5.9 88 18-109 474-561 (844)
8 3e6j_A Variable lymphocyte rec 99.7 4.6E-16 1.6E-20 118.2 11.9 88 1-89 41-128 (229)
9 1w8a_A SLIT protein; signaling 99.7 4.9E-17 1.7E-21 120.4 5.2 89 1-89 55-143 (192)
10 2o6r_A Variable lymphocyte rec 99.6 1.4E-15 4.7E-20 110.9 11.3 89 1-89 29-117 (177)
11 3m19_A Variable lymphocyte rec 99.6 2E-15 6.8E-20 116.0 12.2 89 1-89 60-148 (251)
12 3g39_A Variable lymphocyte rec 99.6 1.7E-15 5.7E-20 110.1 10.6 84 3-89 12-95 (170)
13 3g39_A Variable lymphocyte rec 99.6 1.5E-15 5E-20 110.4 10.1 89 1-89 31-119 (170)
14 1p9a_G Platelet glycoprotein I 99.6 3.8E-15 1.3E-19 117.0 11.6 83 2-85 79-161 (290)
15 2o6s_A Variable lymphocyte rec 99.6 7.8E-15 2.7E-19 109.5 12.7 85 2-86 30-114 (208)
16 3rfs_A Internalin B, repeat mo 99.6 5.8E-15 2E-19 114.8 12.1 89 1-89 86-174 (272)
17 2o6q_A Variable lymphocyte rec 99.6 6.2E-15 2.1E-19 114.4 12.1 85 2-86 87-171 (270)
18 4g8a_A TOLL-like receptor 4; l 99.6 1.3E-15 4.5E-20 130.1 9.0 114 1-118 470-584 (635)
19 2r9u_A Variable lymphocyte rec 99.6 4.2E-15 1.4E-19 108.4 10.1 81 3-86 15-95 (174)
20 2r9u_A Variable lymphocyte rec 99.6 6.8E-15 2.3E-19 107.3 10.9 89 1-89 34-122 (174)
21 2xot_A Amphoterin-induced prot 99.6 1.5E-15 5.2E-20 122.7 8.1 86 1-86 65-150 (361)
22 3e6j_A Variable lymphocyte rec 99.6 1.3E-14 4.4E-19 110.2 11.4 112 1-118 65-176 (229)
23 3v47_A TOLL-like receptor 5B a 99.6 5.5E-15 1.9E-19 122.3 10.0 112 2-118 301-412 (455)
24 2v9t_B SLIT homolog 2 protein 99.6 1.1E-14 3.6E-19 110.1 10.2 90 1-90 33-122 (220)
25 2v70_A SLIT-2, SLIT homolog 2 99.6 9.1E-15 3.1E-19 110.4 9.7 89 1-89 82-170 (220)
26 3m19_A Variable lymphocyte rec 99.6 2.9E-14 1E-18 109.4 11.9 105 1-105 36-141 (251)
27 2wfh_A SLIT homolog 2 protein 99.5 2E-14 7E-19 106.4 9.3 87 1-87 55-141 (193)
28 4g8a_A TOLL-like receptor 4; l 99.5 1.6E-14 5.6E-19 123.4 10.0 105 1-105 53-158 (635)
29 2ifg_A High affinity nerve gro 99.5 2.3E-14 7.9E-19 114.8 9.8 84 4-89 12-97 (347)
30 2o6s_A Variable lymphocyte rec 99.5 7.7E-14 2.6E-18 104.1 12.0 106 1-106 53-159 (208)
31 1ozn_A Reticulon 4 receptor; N 99.5 9.8E-15 3.3E-19 113.9 7.1 90 1-90 106-195 (285)
32 2z66_A Variable lymphocyte rec 99.5 1.6E-14 5.6E-19 113.7 8.4 87 1-87 127-214 (306)
33 3zyj_A Leucine-rich repeat-con 99.5 2.2E-14 7.5E-19 118.6 9.3 110 1-118 186-296 (440)
34 2o6r_A Variable lymphocyte rec 99.5 3.3E-14 1.1E-18 103.5 9.2 89 1-89 53-141 (177)
35 1ogq_A PGIP-2, polygalacturona 99.5 5.5E-15 1.9E-19 117.2 5.3 90 1-90 77-167 (313)
36 2je0_A Acidic leucine-rich nuc 99.5 2.4E-14 8.2E-19 101.3 8.1 84 1-86 18-102 (149)
37 3rfs_A Internalin B, repeat mo 99.5 1.1E-13 3.6E-18 107.6 11.9 87 1-89 64-150 (272)
38 3zyi_A Leucine-rich repeat-con 99.5 3.4E-14 1.2E-18 117.8 9.5 110 1-118 197-307 (452)
39 2ell_A Acidic leucine-rich nuc 99.5 4E-14 1.4E-18 102.2 7.9 103 1-105 25-130 (168)
40 4fcg_A Uncharacterized protein 99.5 1.2E-13 4.1E-18 110.3 10.3 104 1-106 184-288 (328)
41 4fcg_A Uncharacterized protein 99.5 1.2E-13 4.1E-18 110.3 10.0 104 1-106 151-264 (328)
42 2z63_A TOLL-like receptor 4, v 99.5 5.4E-14 1.8E-18 119.2 8.3 113 1-118 422-535 (570)
43 1p9a_G Platelet glycoprotein I 99.5 2.7E-13 9.2E-18 106.5 11.6 112 1-118 101-212 (290)
44 2id5_A Lingo-1, leucine rich r 99.5 7E-14 2.4E-18 116.4 8.7 112 1-118 225-337 (477)
45 3rgz_A Protein brassinosteroid 99.5 8.9E-14 3E-18 122.5 9.5 89 2-90 444-532 (768)
46 4ezg_A Putative uncharacterize 99.5 1.1E-13 3.7E-18 102.6 8.2 101 1-104 67-168 (197)
47 2ell_A Acidic leucine-rich nuc 99.5 8.5E-14 2.9E-18 100.4 6.9 87 1-89 50-137 (168)
48 2o6q_A Variable lymphocyte rec 99.5 6.2E-13 2.1E-17 103.1 12.0 88 1-88 62-149 (270)
49 2ifg_A High affinity nerve gro 99.5 1.4E-13 4.7E-18 110.3 8.5 86 1-87 32-118 (347)
50 3vq2_A TLR4, TOLL-like recepto 99.5 1E-13 3.5E-18 118.6 7.9 113 2-119 450-563 (606)
51 2je0_A Acidic leucine-rich nuc 99.5 7.2E-14 2.5E-18 98.9 5.6 87 1-89 43-130 (149)
52 2xot_A Amphoterin-induced prot 99.5 2.2E-13 7.6E-18 110.0 9.1 90 1-90 40-130 (361)
53 1ozn_A Reticulon 4 receptor; N 99.4 6.5E-13 2.2E-17 103.6 11.3 84 2-85 58-142 (285)
54 1dce_A Protein (RAB geranylger 99.4 3.4E-13 1.2E-17 115.1 10.3 99 2-105 443-543 (567)
55 2z62_A TOLL-like receptor 4, v 99.4 4.2E-13 1.4E-17 104.2 9.7 88 1-88 29-116 (276)
56 3t6q_A CD180 antigen; protein- 99.4 9.7E-14 3.3E-18 118.7 6.3 89 1-89 426-517 (606)
57 3v47_A TOLL-like receptor 5B a 99.4 4E-13 1.4E-17 111.0 9.5 105 1-105 276-381 (455)
58 2z81_A CD282 antigen, TOLL-lik 99.4 4.8E-13 1.6E-17 113.1 9.5 86 1-86 27-112 (549)
59 1xku_A Decorin; proteoglycan, 99.4 1.1E-12 3.9E-17 104.2 10.9 83 2-85 194-276 (330)
60 4ezg_A Putative uncharacterize 99.4 5.1E-13 1.7E-17 98.9 8.3 101 1-105 45-146 (197)
61 2xwt_C Thyrotropin receptor; s 99.4 1.9E-13 6.5E-18 104.0 6.0 97 1-98 32-130 (239)
62 1dce_A Protein (RAB geranylger 99.4 5.5E-13 1.9E-17 113.8 9.5 88 1-91 464-552 (567)
63 3zyi_A Leucine-rich repeat-con 99.4 7.1E-13 2.4E-17 109.9 9.8 87 1-87 76-162 (452)
64 3t6q_A CD180 antigen; protein- 99.4 5.6E-13 1.9E-17 113.9 9.4 85 2-86 35-119 (606)
65 3oja_B Anopheles plasmodium-re 99.4 1.1E-12 3.8E-17 112.4 11.3 90 1-90 76-165 (597)
66 2z7x_B TOLL-like receptor 1, v 99.4 8.8E-13 3E-17 110.9 10.4 83 2-85 350-457 (520)
67 1a9n_A U2A', U2A'; complex (nu 99.4 2E-13 6.9E-18 99.3 5.6 100 1-105 20-123 (176)
68 2z80_A TOLL-like receptor 2, v 99.4 7.6E-13 2.6E-17 106.3 9.4 104 1-105 53-159 (353)
69 3vq2_A TLR4, TOLL-like recepto 99.4 9.1E-13 3.1E-17 112.6 10.2 86 2-87 34-119 (606)
70 3o6n_A APL1; leucine-rich repe 99.4 1.8E-12 6E-17 105.4 11.3 90 1-90 70-159 (390)
71 2z62_A TOLL-like receptor 4, v 99.4 9.5E-13 3.3E-17 102.2 8.7 84 2-85 54-137 (276)
72 2z66_A Variable lymphocyte rec 99.4 5.7E-13 1.9E-17 104.8 7.5 90 1-90 102-193 (306)
73 1ziw_A TOLL-like receptor 3; i 99.4 5.8E-13 2E-17 115.4 8.2 119 1-119 481-627 (680)
74 4b8c_D Glucose-repressible alc 99.4 8.8E-13 3E-17 115.6 9.3 101 1-105 225-326 (727)
75 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 1.4E-12 4.7E-17 110.9 10.2 112 1-118 378-514 (562)
76 4eco_A Uncharacterized protein 99.4 2.1E-12 7.1E-17 111.6 11.4 87 2-91 490-584 (636)
77 2id5_A Lingo-1, leucine rich r 99.4 1.3E-12 4.5E-17 108.8 9.7 86 2-87 34-119 (477)
78 4eco_A Uncharacterized protein 99.4 3.9E-13 1.3E-17 116.1 6.6 89 1-90 207-322 (636)
79 1a9n_A U2A', U2A'; complex (nu 99.4 1.2E-12 4.2E-17 95.1 8.1 86 1-90 43-130 (176)
80 2ft3_A Biglycan; proteoglycan, 99.4 1.3E-12 4.6E-17 104.0 8.9 84 2-86 195-278 (332)
81 1wwl_A Monocyte differentiatio 99.4 1.9E-13 6.6E-18 108.1 3.8 86 1-87 96-188 (312)
82 4b8c_D Glucose-repressible alc 99.4 2.3E-13 7.9E-18 119.3 4.7 87 1-90 248-334 (727)
83 3zyj_A Leucine-rich repeat-con 99.4 1.9E-12 6.4E-17 107.0 9.8 87 1-87 65-151 (440)
84 3oja_A Leucine-rich immune mol 99.4 9.9E-13 3.4E-17 110.3 8.1 104 2-109 146-251 (487)
85 3j0a_A TOLL-like receptor 5; m 99.4 1.1E-12 3.9E-17 116.5 8.3 87 2-88 26-113 (844)
86 3oja_B Anopheles plasmodium-re 99.4 3.8E-12 1.3E-16 109.1 11.1 87 1-87 100-186 (597)
87 2z7x_B TOLL-like receptor 1, v 99.4 1.2E-12 3.9E-17 110.1 7.6 86 1-89 22-108 (520)
88 1ziw_A TOLL-like receptor 3; i 99.4 3.6E-12 1.2E-16 110.4 10.9 87 2-88 51-137 (680)
89 3o6n_A APL1; leucine-rich repe 99.4 5.2E-12 1.8E-16 102.6 11.0 87 1-87 94-180 (390)
90 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 2.4E-12 8.3E-17 109.4 9.0 83 1-86 53-135 (562)
91 2z63_A TOLL-like receptor 4, v 99.3 3.4E-12 1.2E-16 108.1 9.7 86 1-86 29-114 (570)
92 1wwl_A Monocyte differentiatio 99.3 2.3E-12 7.7E-17 102.0 7.5 83 2-85 123-214 (312)
93 2z81_A CD282 antigen, TOLL-lik 99.3 2.1E-12 7.2E-17 109.1 7.5 89 1-89 51-140 (549)
94 4ecn_A Leucine-rich repeat pro 99.3 1.1E-12 3.8E-17 116.8 5.5 89 1-90 449-565 (876)
95 4ecn_A Leucine-rich repeat pro 99.3 9.6E-12 3.3E-16 110.8 11.4 86 2-90 699-800 (876)
96 2ft3_A Biglycan; proteoglycan, 99.3 6.2E-12 2.1E-16 100.1 9.2 81 2-85 56-136 (332)
97 3oja_A Leucine-rich immune mol 99.3 1.5E-12 5E-17 109.2 5.3 87 2-90 122-209 (487)
98 3o53_A Protein LRIM1, AGAP0063 99.3 5.2E-12 1.8E-16 100.1 8.0 82 2-85 122-204 (317)
99 4glp_A Monocyte differentiatio 99.3 4.8E-12 1.6E-16 99.9 7.1 86 1-86 92-183 (310)
100 2z80_A TOLL-like receptor 2, v 99.3 6E-12 2E-16 101.0 7.6 85 1-86 77-164 (353)
101 1xku_A Decorin; proteoglycan, 99.3 3.3E-11 1.1E-15 95.7 11.6 66 24-90 192-257 (330)
102 4fmz_A Internalin; leucine ric 99.3 1.6E-11 5.4E-16 98.0 9.6 83 1-89 222-304 (347)
103 4glp_A Monocyte differentiatio 99.3 4.3E-12 1.5E-16 100.2 6.2 102 1-105 170-282 (310)
104 1h6t_A Internalin B; cell adhe 99.3 1.8E-11 6.3E-16 95.9 8.7 82 1-88 91-172 (291)
105 2xwt_C Thyrotropin receptor; s 99.2 1.6E-11 5.5E-16 93.3 7.7 84 1-87 106-195 (239)
106 1h6t_A Internalin B; cell adhe 99.2 5.1E-11 1.7E-15 93.4 10.5 80 1-86 69-148 (291)
107 1xeu_A Internalin C; cellular 99.2 5.5E-11 1.9E-15 91.9 10.2 77 2-85 65-141 (263)
108 3o53_A Protein LRIM1, AGAP0063 99.2 8.4E-12 2.9E-16 98.9 5.3 82 2-86 101-183 (317)
109 1h6u_A Internalin H; cell adhe 99.2 4.3E-11 1.5E-15 94.6 8.8 79 1-85 108-186 (308)
110 1xeu_A Internalin C; cellular 99.2 6E-11 2.1E-15 91.7 9.3 96 1-104 42-137 (263)
111 1h6u_A Internalin H; cell adhe 99.2 6.2E-11 2.1E-15 93.6 9.6 80 1-86 86-165 (308)
112 1m9s_A Internalin B; cell inva 99.2 5.6E-11 1.9E-15 102.1 9.6 96 2-104 111-206 (605)
113 1m9s_A Internalin B; cell inva 99.2 1.6E-10 5.6E-15 99.3 10.4 96 2-104 89-184 (605)
114 1o6v_A Internalin A; bacterial 99.1 1.4E-10 4.6E-15 96.5 9.4 78 2-85 267-344 (466)
115 1o6v_A Internalin A; bacterial 99.1 2.7E-10 9.4E-15 94.7 10.2 83 1-89 244-326 (466)
116 4fmz_A Internalin; leucine ric 99.1 7.7E-11 2.6E-15 94.0 6.6 100 1-105 244-343 (347)
117 4ay9_X Follicle-stimulating ho 99.1 9.8E-11 3.3E-15 94.0 6.8 88 1-88 31-120 (350)
118 3bz5_A Internalin-J, INLJ; leu 99.1 7.5E-10 2.6E-14 92.1 10.7 78 1-86 43-120 (457)
119 1ds9_A Outer arm dynein; leuci 99.1 8.9E-13 3E-17 97.7 -6.8 79 4-85 22-106 (198)
120 3cvr_A Invasion plasmid antige 99.1 8.3E-10 2.8E-14 94.2 10.6 72 2-85 82-153 (571)
121 3cvr_A Invasion plasmid antige 99.1 2.3E-10 7.8E-15 97.7 7.0 79 2-89 162-247 (571)
122 3bz5_A Internalin-J, INLJ; leu 99.0 2.8E-09 9.5E-14 88.7 11.8 77 1-86 65-141 (457)
123 3g06_A SSPH2 (leucine-rich rep 99.0 8.4E-10 2.9E-14 95.1 8.1 79 2-89 223-301 (622)
124 1ds9_A Outer arm dynein; leuci 99.0 1.8E-12 6.2E-17 96.0 -8.1 81 1-86 49-129 (198)
125 3goz_A Leucine-rich repeat-con 99.0 1.4E-10 4.9E-15 93.4 2.3 87 1-87 23-124 (362)
126 2ca6_A RAN GTPase-activating p 99.0 1.1E-10 3.7E-15 94.7 1.5 86 1-86 188-288 (386)
127 1jl5_A Outer protein YOPM; leu 99.0 7.3E-10 2.5E-14 92.1 6.4 60 24-91 317-378 (454)
128 1jl5_A Outer protein YOPM; leu 99.0 3.8E-09 1.3E-13 87.8 10.7 78 1-86 132-209 (454)
129 2ast_B S-phase kinase-associat 99.0 1.8E-10 6.1E-15 91.4 2.4 84 2-85 95-182 (336)
130 2ca6_A RAN GTPase-activating p 98.9 8.4E-11 2.9E-15 95.4 -0.0 86 1-86 160-258 (386)
131 3goz_A Leucine-rich repeat-con 98.9 8.7E-10 3E-14 88.8 3.3 86 4-89 2-97 (362)
132 3rw6_A Nuclear RNA export fact 98.9 3E-09 1E-13 82.4 5.7 68 21-90 167-238 (267)
133 2ast_B S-phase kinase-associat 98.8 1.1E-09 3.6E-14 86.9 3.1 85 1-86 71-157 (336)
134 3g06_A SSPH2 (leucine-rich rep 98.8 2E-08 6.9E-13 86.5 9.6 72 2-85 63-134 (622)
135 1z7x_W Ribonuclease inhibitor; 98.7 1.4E-09 4.9E-14 89.7 1.0 86 1-86 285-384 (461)
136 3rw6_A Nuclear RNA export fact 98.7 2.1E-09 7.3E-14 83.2 1.9 75 2-78 172-257 (267)
137 4ay9_X Follicle-stimulating ho 98.7 3.1E-08 1.1E-12 79.3 6.7 82 3-85 131-215 (350)
138 3sb4_A Hypothetical leucine ri 98.7 5E-08 1.7E-12 77.4 7.6 87 1-90 227-314 (329)
139 3un9_A NLR family member X1; l 98.6 6.6E-09 2.3E-13 84.2 1.5 86 1-86 127-225 (372)
140 1z7x_W Ribonuclease inhibitor; 98.6 5.3E-09 1.8E-13 86.3 -0.1 84 2-85 229-326 (461)
141 3un9_A NLR family member X1; l 98.5 2.8E-08 9.6E-13 80.5 2.0 85 1-85 102-196 (372)
142 1io0_A Tropomodulin; LRR prote 98.4 8.5E-08 2.9E-12 70.1 1.8 85 1-85 37-136 (185)
143 1io0_A Tropomodulin; LRR prote 98.4 1.5E-07 5.1E-12 68.8 2.7 71 16-86 28-107 (185)
144 3ogk_B Coronatine-insensitive 98.3 1.1E-07 3.8E-12 80.7 1.3 63 23-85 462-526 (592)
145 3e4g_A ATP synthase subunit S, 98.3 3E-07 1E-11 66.7 2.3 83 1-83 62-150 (176)
146 3sb4_A Hypothetical leucine ri 98.2 2.6E-06 8.9E-11 67.4 5.9 77 1-79 251-328 (329)
147 3ogk_B Coronatine-insensitive 98.1 1.2E-06 4E-11 74.4 2.9 84 2-85 140-233 (592)
148 2p1m_B Transport inhibitor res 98.1 3.7E-07 1.3E-11 77.5 -0.6 84 1-85 398-494 (594)
149 2p1m_B Transport inhibitor res 97.9 2.6E-06 8.7E-11 72.3 1.3 82 2-83 107-195 (594)
150 3rfe_A Platelet glycoprotein I 97.8 6.8E-05 2.3E-09 51.5 7.2 56 28-85 12-68 (130)
151 3rfe_A Platelet glycoprotein I 97.8 4.5E-05 1.5E-09 52.4 6.1 57 3-61 11-68 (130)
152 4fdw_A Leucine rich hypothetic 97.6 0.00014 4.9E-09 59.3 7.3 82 1-85 249-335 (401)
153 4fdw_A Leucine rich hypothetic 97.6 0.0002 6.8E-09 58.4 7.7 85 1-90 227-316 (401)
154 2ra8_A Uncharacterized protein 97.4 6.3E-05 2.1E-09 60.6 2.9 9 2-10 174-182 (362)
155 2ra8_A Uncharacterized protein 97.3 2.1E-05 7.1E-10 63.4 -0.9 85 1-85 220-320 (362)
156 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00015 5.1E-09 53.4 3.1 41 45-85 67-111 (197)
157 4fs7_A Uncharacterized protein 96.9 0.0015 5E-08 52.8 6.3 61 20-82 293-353 (394)
158 3e4g_A ATP synthase subunit S, 96.8 0.00059 2E-08 49.3 2.3 62 24-85 61-128 (176)
159 1pgv_A TMD-1, tropomodulin TMD 96.7 0.00074 2.5E-08 49.6 2.7 82 1-82 42-136 (197)
160 4gt6_A Cell surface protein; l 96.7 0.0048 1.7E-07 49.7 7.7 78 2-82 267-344 (394)
161 4h09_A Hypothetical leucine ri 96.4 0.0043 1.5E-07 49.6 5.6 79 2-82 242-320 (379)
162 4h09_A Hypothetical leucine ri 96.0 0.016 5.5E-07 46.2 6.9 81 2-85 219-299 (379)
163 4gt6_A Cell surface protein; l 95.9 0.024 8.2E-07 45.6 7.5 64 17-82 258-321 (394)
164 4fs7_A Uncharacterized protein 95.5 0.0096 3.3E-07 48.0 3.5 79 1-82 298-376 (394)
165 2ks1_B Epidermal growth factor 88.7 0.2 7E-06 27.1 1.6 16 147-162 13-28 (44)
166 2l2t_A Receptor tyrosine-prote 86.7 0.36 1.2E-05 26.1 1.8 13 147-159 12-24 (44)
167 2k9y_A Ephrin type-A receptor 84.9 0.85 2.9E-05 24.0 2.8 13 147-159 15-27 (41)
168 2k1k_A Ephrin type-A receptor 83.8 1.5 5E-05 22.9 3.3 11 149-159 14-24 (38)
169 2knc_B Integrin beta-3; transm 83.1 2.8 9.5E-05 25.7 4.9 8 147-154 13-20 (79)
170 2ks1_B Epidermal growth factor 80.0 2.4 8.2E-05 22.8 3.3 24 146-169 15-38 (44)
171 2lz0_A Uncharacterized protein 72.8 9.8 0.00033 24.1 5.5 47 10-57 6-52 (100)
172 2k1a_A Integrin alpha-IIB; sin 67.2 8 0.00027 20.5 3.4 24 143-166 9-32 (42)
173 2knc_B Integrin beta-3; transm 63.4 7.5 0.00026 23.7 3.2 12 149-160 11-22 (79)
174 1v54_I STA, cytochrome C oxida 59.7 6 0.00021 23.8 2.2 16 164-179 38-55 (73)
175 2knc_A Integrin alpha-IIB; tra 57.2 10 0.00036 21.2 2.8 24 143-166 11-34 (54)
176 2l8s_A Integrin alpha-1; trans 55.3 13 0.00046 20.8 3.0 23 144-166 9-31 (54)
177 2lz0_A Uncharacterized protein 51.5 24 0.0008 22.3 4.3 46 35-81 7-52 (100)
178 2klu_A T-cell surface glycopro 48.6 20 0.00069 20.9 3.1 18 147-164 12-29 (70)
179 2l34_A TYRO protein tyrosine k 42.3 17 0.00058 18.1 1.9 12 149-160 10-21 (33)
180 1scf_A Stem cell factor; steel 37.8 6.8 0.00023 29.2 0.0 28 140-167 211-238 (273)
181 2iub_A CORA, divalent cation t 31.0 24 0.00081 27.9 2.1 6 169-174 358-363 (363)
182 2yew_B E1 envelope glycoprotei 30.5 44 0.0015 26.5 3.4 16 107-122 360-376 (427)
183 1afo_A Glycophorin A; integral 28.9 48 0.0016 17.1 2.3 6 153-158 17-22 (40)
184 2ls4_A High affinity copper up 28.6 18 0.00061 17.0 0.0 16 152-167 6-21 (26)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.86 E-value=6.2e-22 Score=174.35 Aligned_cols=120 Identities=41% Similarity=0.678 Sum_probs=114.6
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|+.|||++|.++|.+|..++.++.|+.|+|++|.++|.+|..++.+++|+.||+++|+++|.+|..+..+++|++||++
T Consensus 633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 712 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712 (768)
T ss_dssp CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCccCCCCCCccCCCCcccccCCccccCCCCCCCCCCCC
Q 035751 81 YNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSNDA 121 (195)
Q Consensus 81 ~N~l~g~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~c~~~~ 121 (195)
+|+++|.+|...++..+....+.||+.+||.|+. .|....
T Consensus 713 ~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~ 752 (768)
T 3rgz_A 713 NNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSN 752 (768)
T ss_dssp SSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred CCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCc
Confidence 9999999999999999999999999999999987 786543
No 2
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=125.14 Aligned_cols=113 Identities=18% Similarity=0.301 Sum_probs=76.8
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|+.|+|++|.|++..+..|..+++|++|+|++|.+++..+..|..+++|++|++++|.+++..|..+..+++|+.|+++
T Consensus 58 ~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 137 (220)
T 2v70_A 58 QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY 137 (220)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECT
T ss_pred CCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECC
Confidence 36677777777776666677777777777777777776666667777777777777777776667777777777777777
Q ss_pred cCcCccCCCCCCccCCCCcccccCCccccCCCCCCCCC
Q 035751 81 YNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCS 118 (195)
Q Consensus 81 ~N~l~g~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~c~ 118 (195)
+|.+++..|.. +..+..+....+.+|++.|+|.
T Consensus 138 ~N~l~~~~~~~-----~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 138 DNQITTVAPGA-----FDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TSCCCCBCTTT-----TTTCTTCCEEECCSCCEECSGG
T ss_pred CCcCCEECHHH-----hcCCCCCCEEEecCcCCcCCCc
Confidence 77777655542 2222223334555666666665
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.72 E-value=8.4e-18 Score=133.50 Aligned_cols=114 Identities=33% Similarity=0.584 Sum_probs=104.2
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
|++|++++|.+++..|..+..+++|+.|+|++|.+++.+|. +..+++|++|++++|.+++.+|..+..+++|+.|++++
T Consensus 199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 277 (313)
T 1ogq_A 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277 (313)
T ss_dssp CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcC
Confidence 67889999999888889999999999999999999976665 88899999999999999999999999999999999999
Q ss_pred CcCccCCCCCCccCCCCcccccCCccccCCCCCCCC
Q 035751 82 NRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTC 117 (195)
Q Consensus 82 N~l~g~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~c 117 (195)
|.++|.+|....+..+..+.+.+|+.+||.|.. .|
T Consensus 278 N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 278 NNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp SEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred CcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 999999999888889999999999999998876 45
No 4
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.72 E-value=3.2e-17 Score=121.63 Aligned_cols=112 Identities=32% Similarity=0.507 Sum_probs=92.7
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|++|+|++|.|+ .+|..|..+++|+.|+|++|.|++..+..|..+++|++|++++|.|++..|..|..+++|+.|+++
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 4789999999998 788999999999999999999998888889999999999999999998888889999999999999
Q ss_pred cCcCccCCCCCCccCCCCcccccCCccccCCCCCCCCC
Q 035751 81 YNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCS 118 (195)
Q Consensus 81 ~N~l~g~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~c~ 118 (195)
+|.+++ +|.. .+..+..+....+.+||+.|+|.
T Consensus 111 ~N~l~~-~~~~----~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 111 GNDISV-VPEG----AFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp SSCCCB-CCTT----TTTTCTTCCEEECCSSCEECSGG
T ss_pred CCCCCe-eChh----hhhcCccccEEEeCCCCeecCCc
Confidence 999994 4432 12222333344566667777775
No 5
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.71 E-value=4.2e-17 Score=123.31 Aligned_cols=86 Identities=28% Similarity=0.315 Sum_probs=49.8
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
|+.|+|++|.|++..|..|..+++|++|+|++|.|+...+..|..+++|++|++++|.+++..|..+..+++|+.|++++
T Consensus 58 L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 137 (220)
T 2v9t_B 58 LRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD 137 (220)
T ss_dssp CCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC
Confidence 45556666665555555556666666666666666544444455566666666666666555555555666666666666
Q ss_pred CcCccC
Q 035751 82 NRLWGR 87 (195)
Q Consensus 82 N~l~g~ 87 (195)
|.+++.
T Consensus 138 N~l~~~ 143 (220)
T 2v9t_B 138 NKLQTI 143 (220)
T ss_dssp SCCSCC
T ss_pred CcCCEE
Confidence 666533
No 6
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=3.2e-17 Score=121.42 Aligned_cols=113 Identities=26% Similarity=0.392 Sum_probs=91.6
Q ss_pred CccEEEecCCcCCCCcch-hhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEc
Q 035751 1 MFRATDLSSNRFCGEIPK-VLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNL 79 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l 79 (195)
+|++|++++|.|++..+. .|..+++|++|+|++|.+++..|..|..+++|++|++++|.|++..+..+..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 478999999999966654 4899999999999999999888999999999999999999999888888999999999999
Q ss_pred ccCcCccCCCCCCccCCCCcccccCCccccCCCCCCCCC
Q 035751 80 SYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCS 118 (195)
Q Consensus 80 ~~N~l~g~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~c~ 118 (195)
++|.+++..|.. +..+..+....+.+|++.++|.
T Consensus 110 ~~N~l~~~~~~~-----~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 110 YDNQISCVMPGS-----FEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CSSCCCEECTTS-----STTCTTCCEEECTTCCBCCSGG
T ss_pred CCCcCCeeCHHH-----hhcCCCCCEEEeCCCCccCcCc
Confidence 999999877753 2222223333455666666654
No 7
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.71 E-value=6.3e-18 Score=150.23 Aligned_cols=88 Identities=31% Similarity=0.418 Sum_probs=58.8
Q ss_pred hhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcccCcCccCCCCCCccCCC
Q 035751 18 KVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTF 97 (195)
Q Consensus 18 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~ 97 (195)
..|.++++|+.|+|++|.+++..|..|..+++|+.|++++|++++..|..+. ++|+.|++++|.+++..|.. +..+
T Consensus 474 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L 549 (844)
T 3j0a_A 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSL 549 (844)
T ss_dssp SCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSC
T ss_pred hhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCc
Confidence 4456667777777777777766666677777777777777777755444443 67777777777777766653 4455
Q ss_pred CcccccCCcccc
Q 035751 98 ENDSYIGNIHLC 109 (195)
Q Consensus 98 ~~~~~~~n~~l~ 109 (195)
..+.+.+|+..|
T Consensus 550 ~~l~l~~Np~~C 561 (844)
T 3j0a_A 550 SVLDITHNKFIC 561 (844)
T ss_dssp CEEEEEEECCCC
T ss_pred CEEEecCCCccc
Confidence 555666666555
No 8
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.67 E-value=4.6e-16 Score=118.20 Aligned_cols=88 Identities=27% Similarity=0.265 Sum_probs=58.3
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|++|+|++|.|++..|..|..+++|+.|+|++|.++...+..|..+++|++|++++|.|++..+..+..+++|+.|+++
T Consensus 41 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls 120 (229)
T 3e6j_A 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC 120 (229)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEecc
Confidence 35677777777776666667777777777777777765544556667777777777777765545555666666666666
Q ss_pred cCcCccCCC
Q 035751 81 YNRLWGRIP 89 (195)
Q Consensus 81 ~N~l~g~~p 89 (195)
+|.++ .+|
T Consensus 121 ~N~l~-~lp 128 (229)
T 3e6j_A 121 CNKLT-ELP 128 (229)
T ss_dssp SSCCC-SCC
T ss_pred CCccc-ccC
Confidence 66666 444
No 9
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=4.9e-17 Score=120.41 Aligned_cols=89 Identities=20% Similarity=0.271 Sum_probs=84.2
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|++|+|++|.|++..|..|..+++|++|+|++|.+++..|..|..+++|++|++++|.+++..|..+..+++|+.|+++
T Consensus 55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence 58999999999999889999999999999999999998888889999999999999999999889999999999999999
Q ss_pred cCcCccCCC
Q 035751 81 YNRLWGRIP 89 (195)
Q Consensus 81 ~N~l~g~~p 89 (195)
+|++++..+
T Consensus 135 ~N~l~c~c~ 143 (192)
T 1w8a_A 135 SNPFNCNCH 143 (192)
T ss_dssp TCCBCCSGG
T ss_pred CCCccCcCc
Confidence 999997665
No 10
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=1.4e-15 Score=110.91 Aligned_cols=89 Identities=27% Similarity=0.219 Sum_probs=76.7
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 47889999999997777778899999999999999997777778999999999999999997666677889999999999
Q ss_pred cCcCccCCC
Q 035751 81 YNRLWGRIP 89 (195)
Q Consensus 81 ~N~l~g~~p 89 (195)
+|.+++..+
T Consensus 109 ~N~l~~~~~ 117 (177)
T 2o6r_A 109 TNQLKSVPD 117 (177)
T ss_dssp SSCCSCCCT
T ss_pred CCcceEeCH
Confidence 999984433
No 11
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.64 E-value=2e-15 Score=116.01 Aligned_cols=89 Identities=25% Similarity=0.229 Sum_probs=63.3
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 60 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 139 (251)
T 3m19_A 60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN 139 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECc
Confidence 46777777777777666667777777777777777776666667777777777777777775555556667777777777
Q ss_pred cCcCccCCC
Q 035751 81 YNRLWGRIP 89 (195)
Q Consensus 81 ~N~l~g~~p 89 (195)
+|.+++..+
T Consensus 140 ~N~l~~~~~ 148 (251)
T 3m19_A 140 TNQLQSIPA 148 (251)
T ss_dssp SSCCCCCCT
T ss_pred CCcCCccCH
Confidence 777764433
No 12
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.63 E-value=1.7e-15 Score=110.09 Aligned_cols=84 Identities=29% Similarity=0.306 Sum_probs=57.1
Q ss_pred cEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcccC
Q 035751 3 RATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYN 82 (195)
Q Consensus 3 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N 82 (195)
+.|++++|.++ .+|..+. ++|+.|+|++|.|++..|..|..+++|++|++++|+|++..+..|..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 56777777776 4555442 66777777777777666667777777777777777777555555667777777777777
Q ss_pred cCccCCC
Q 035751 83 RLWGRIP 89 (195)
Q Consensus 83 ~l~g~~p 89 (195)
.+++..+
T Consensus 89 ~l~~~~~ 95 (170)
T 3g39_A 89 QLKSIPR 95 (170)
T ss_dssp CCCCCCT
T ss_pred ccCEeCH
Confidence 7764333
No 13
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.63 E-value=1.5e-15 Score=110.42 Aligned_cols=89 Identities=24% Similarity=0.194 Sum_probs=81.8
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|++|+|++|.|++..|..|..+++|++|+|++|.|++..+..|..+++|++|++++|.|++..+..+..+++|+.|+++
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence 47899999999998889999999999999999999997777778999999999999999997766779999999999999
Q ss_pred cCcCccCCC
Q 035751 81 YNRLWGRIP 89 (195)
Q Consensus 81 ~N~l~g~~p 89 (195)
+|++++..+
T Consensus 111 ~N~~~c~c~ 119 (170)
T 3g39_A 111 NNPWDCACS 119 (170)
T ss_dssp SSCBCTTBG
T ss_pred CCCCCCCch
Confidence 999986654
No 14
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.62 E-value=3.8e-15 Score=117.04 Aligned_cols=83 Identities=29% Similarity=0.320 Sum_probs=49.2
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
|++|++++|.++ .+|..+..+++|+.|++++|.+++..|..|..+++|++|++++|++++..+..+..+++|+.|++++
T Consensus 79 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence 556666666665 4555555666666666666666655445566666666666666666544444455556666666666
Q ss_pred CcCc
Q 035751 82 NRLW 85 (195)
Q Consensus 82 N~l~ 85 (195)
|.++
T Consensus 158 N~l~ 161 (290)
T 1p9a_G 158 NNLT 161 (290)
T ss_dssp SCCS
T ss_pred CcCC
Confidence 6665
No 15
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.61 E-value=7.8e-15 Score=109.50 Aligned_cols=85 Identities=28% Similarity=0.258 Sum_probs=49.3
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 109 (208)
T 2o6s_A 30 TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT 109 (208)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCC
Confidence 55666666666654444555666666666666666644444455566666666666666544444455556666666666
Q ss_pred CcCcc
Q 035751 82 NRLWG 86 (195)
Q Consensus 82 N~l~g 86 (195)
|.+++
T Consensus 110 N~l~~ 114 (208)
T 2o6s_A 110 NQLQS 114 (208)
T ss_dssp SCCCC
T ss_pred CcCcc
Confidence 66653
No 16
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.61 E-value=5.8e-15 Score=114.77 Aligned_cols=89 Identities=28% Similarity=0.280 Sum_probs=58.5
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 86 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 165 (272)
T 3rfs_A 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS 165 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECC
Confidence 36667777777776555566667777777777777765555556667777777777777665555555666667777777
Q ss_pred cCcCccCCC
Q 035751 81 YNRLWGRIP 89 (195)
Q Consensus 81 ~N~l~g~~p 89 (195)
+|.+++..+
T Consensus 166 ~n~l~~~~~ 174 (272)
T 3rfs_A 166 YNQLQSLPE 174 (272)
T ss_dssp SSCCCCCCT
T ss_pred CCCcCccCH
Confidence 776664433
No 17
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.61 E-value=6.2e-15 Score=114.42 Aligned_cols=85 Identities=26% Similarity=0.295 Sum_probs=50.0
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
|++|+|++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus 87 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 166 (270)
T 2o6q_A 87 LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN 166 (270)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecC
Confidence 56666666666655445556666666666666666655555556666666666666666544344455555666666666
Q ss_pred CcCcc
Q 035751 82 NRLWG 86 (195)
Q Consensus 82 N~l~g 86 (195)
|.+++
T Consensus 167 n~l~~ 171 (270)
T 2o6q_A 167 NQLKR 171 (270)
T ss_dssp SCCSC
T ss_pred CcCcE
Confidence 65553
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.61 E-value=1.3e-15 Score=130.15 Aligned_cols=114 Identities=20% Similarity=0.368 Sum_probs=93.7
Q ss_pred CccEEEecCCcCC-CCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEc
Q 035751 1 MFRATDLSSNRFC-GEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNL 79 (195)
Q Consensus 1 ~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l 79 (195)
+|+.|+|++|.+. +..|..|..+++|++|+|++|.+++..|..|..+++|++|+|++|+|++..|..+..+++|+.|++
T Consensus 470 ~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 549 (635)
T 4g8a_A 470 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 549 (635)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEEC
T ss_pred hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEEC
Confidence 4678999998744 457788999999999999999999888999999999999999999999888889999999999999
Q ss_pred ccCcCccCCCCCCccCCCCcccccCCccccCCCCCCCCC
Q 035751 80 SYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCS 118 (195)
Q Consensus 80 ~~N~l~g~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~c~ 118 (195)
++|++++..|... ..+. ..+....+.+||+.|+|.
T Consensus 550 s~N~l~~~~~~~l--~~l~--~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 550 SLNHIMTSKKQEL--QHFP--SSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp TTSCCCBCCSSCT--TCCC--TTCCEEECTTCCBCCSGG
T ss_pred CCCcCCCCCHHHH--Hhhh--CcCCEEEeeCCCCcccCC
Confidence 9999998777642 1110 223334666777888886
No 19
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.60 E-value=4.2e-15 Score=108.44 Aligned_cols=81 Identities=25% Similarity=0.286 Sum_probs=53.7
Q ss_pred cEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcccC
Q 035751 3 RATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYN 82 (195)
Q Consensus 3 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N 82 (195)
+.+++++|.+. .+|..+. ++|+.|+|++|.|++..|..|..+++|++|+|++|+|++..+..+..+++|+.|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45677777765 5555443 66777777777777666666777777777777777776544444566777777777777
Q ss_pred cCcc
Q 035751 83 RLWG 86 (195)
Q Consensus 83 ~l~g 86 (195)
.+++
T Consensus 92 ~l~~ 95 (174)
T 2r9u_A 92 HLKS 95 (174)
T ss_dssp CCCC
T ss_pred ccce
Confidence 7763
No 20
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.60 E-value=6.8e-15 Score=107.31 Aligned_cols=89 Identities=24% Similarity=0.197 Sum_probs=80.1
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|+.|+|++|.|++..|..|..+++|++|+|++|.|++..+..|..+++|++|++++|.|++..+..+..+++|+.|+++
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence 47899999999998889999999999999999999997766678999999999999999996666668999999999999
Q ss_pred cCcCccCCC
Q 035751 81 YNRLWGRIP 89 (195)
Q Consensus 81 ~N~l~g~~p 89 (195)
+|++.+..+
T Consensus 114 ~N~~~c~~~ 122 (174)
T 2r9u_A 114 NNPWDCECR 122 (174)
T ss_dssp SSCBCTTBG
T ss_pred CCCcccccc
Confidence 999985443
No 21
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.60 E-value=1.5e-15 Score=122.68 Aligned_cols=86 Identities=24% Similarity=0.167 Sum_probs=63.9
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|++|+|++|.|++..+..|..+++|+.|+|++|.|+...+..|..+++|++|+|++|.|++..|..|..+++|+.|+|+
T Consensus 65 ~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~ 144 (361)
T 2xot_A 65 NLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS 144 (361)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred ccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECC
Confidence 46777777777776666677777777777777777776656667777777777777777776667777777777777777
Q ss_pred cCcCcc
Q 035751 81 YNRLWG 86 (195)
Q Consensus 81 ~N~l~g 86 (195)
+|.+++
T Consensus 145 ~N~l~~ 150 (361)
T 2xot_A 145 QNQISR 150 (361)
T ss_dssp SSCCCS
T ss_pred CCcCCe
Confidence 777773
No 22
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.58 E-value=1.3e-14 Score=110.20 Aligned_cols=112 Identities=28% Similarity=0.365 Sum_probs=91.2
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|++|+|++|.|....+..|..+++|+.|+|++|.+++..+..|..+++|++|++++|.|+ .+|..+..+++|+.|+++
T Consensus 65 ~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~ 143 (229)
T 3e6j_A 65 NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALD 143 (229)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECC
T ss_pred CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECC
Confidence 5889999999998766677899999999999999999777777899999999999999999 789999999999999999
Q ss_pred cCcCccCCCCCCccCCCCcccccCCccccCCCCCCCCC
Q 035751 81 YNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCS 118 (195)
Q Consensus 81 ~N~l~g~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~c~ 118 (195)
+|.+++..+. .+..+..+....+.+||+.|+|.
T Consensus 144 ~N~l~~~~~~-----~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 144 QNQLKSIPHG-----AFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp SSCCCCCCTT-----TTTTCTTCCEEECTTSCBCTTBG
T ss_pred CCcCCccCHH-----HHhCCCCCCEEEeeCCCccCCcc
Confidence 9999854432 22222333344566677777664
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.58 E-value=5.5e-15 Score=122.25 Aligned_cols=112 Identities=26% Similarity=0.308 Sum_probs=59.6
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
|++|+|++|.+++..|..|..+++|++|+|++|.+++..|..|..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 301 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 380 (455)
T 3v47_A 301 LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT 380 (455)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCC
Confidence 45555555555555555555555555555555555555555555556666666666665555555555566666666666
Q ss_pred CcCccCCCCCCccCCCCcccccCCccccCCCCCCCCC
Q 035751 82 NRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCS 118 (195)
Q Consensus 82 N~l~g~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~c~ 118 (195)
|.+++..+.. +..+..+....+.+|++.++|.
T Consensus 381 N~l~~~~~~~-----~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 381 NQLKSVPDGI-----FDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp SCCSCCCTTT-----TTTCTTCCEEECCSSCBCCCTT
T ss_pred CccccCCHhH-----hccCCcccEEEccCCCcccCCC
Confidence 6665322211 1222222333455566666664
No 24
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.58 E-value=1.1e-14 Score=110.07 Aligned_cols=90 Identities=23% Similarity=0.255 Sum_probs=81.3
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|+.|+|++|.|++..+..|..+++|+.|+|++|.+++..|..|..+++|++|++++|.|+...+..+..+++|+.|+++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 47899999999997777789999999999999999998889999999999999999999996555667889999999999
Q ss_pred cCcCccCCCC
Q 035751 81 YNRLWGRIPR 90 (195)
Q Consensus 81 ~N~l~g~~p~ 90 (195)
+|.+++..|.
T Consensus 113 ~N~l~~~~~~ 122 (220)
T 2v9t_B 113 ANKINCLRVD 122 (220)
T ss_dssp SSCCCCCCTT
T ss_pred CCCCCEeCHH
Confidence 9999976654
No 25
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.57 E-value=9.1e-15 Score=110.41 Aligned_cols=89 Identities=26% Similarity=0.213 Sum_probs=83.6
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|++|+|++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|++++|.+++..|..+..+++|+.|+++
T Consensus 82 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 82 GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence 58999999999998888889999999999999999998889999999999999999999998889999999999999999
Q ss_pred cCcCccCCC
Q 035751 81 YNRLWGRIP 89 (195)
Q Consensus 81 ~N~l~g~~p 89 (195)
+|++++..+
T Consensus 162 ~N~l~c~c~ 170 (220)
T 2v70_A 162 ANPFNCNCY 170 (220)
T ss_dssp SCCEECSGG
T ss_pred CcCCcCCCc
Confidence 999986554
No 26
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.56 E-value=2.9e-14 Score=109.44 Aligned_cols=105 Identities=23% Similarity=0.172 Sum_probs=82.6
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+++.|+|++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence 46789999999998888888899999999999999988877788889999999999999987666778888999999999
Q ss_pred cCcCccCCCCC-CccCCCCcccccCC
Q 035751 81 YNRLWGRIPRG-NQFNTFENDSYIGN 105 (195)
Q Consensus 81 ~N~l~g~~p~~-~~~~~~~~~~~~~n 105 (195)
+|.+++..+.. ..+..+..+.+.+|
T Consensus 116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N 141 (251)
T 3m19_A 116 GNQLKSLPSGVFDRLTKLKELRLNTN 141 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCcCCCcChhHhccCCcccEEECcCC
Confidence 99988544432 23444444444444
No 27
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=2e-14 Score=106.44 Aligned_cols=87 Identities=26% Similarity=0.290 Sum_probs=80.2
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|+.|+|++|.|++..+..|..+++|++|+|++|.+++..|..|..+++|++|++++|.|+...+..+..+++|+.|+++
T Consensus 55 ~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence 58999999999998888899999999999999999998888889999999999999999996666678899999999999
Q ss_pred cCcCccC
Q 035751 81 YNRLWGR 87 (195)
Q Consensus 81 ~N~l~g~ 87 (195)
+|++.+.
T Consensus 135 ~N~~~C~ 141 (193)
T 2wfh_A 135 ANPLYCD 141 (193)
T ss_dssp SSCEECS
T ss_pred CCCeecC
Confidence 9999753
No 28
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.55 E-value=1.6e-14 Score=123.36 Aligned_cols=105 Identities=18% Similarity=0.116 Sum_probs=83.5
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
++++|||++|.|++..+.+|.++++|++|||++|.|++..|..|..+++|++|+|++|+|++..+..|..+++|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 47889999999997777889999999999999999997777789999999999999999987666778899999999999
Q ss_pred cCcCccCCCCC-CccCCCCcccccCC
Q 035751 81 YNRLWGRIPRG-NQFNTFENDSYIGN 105 (195)
Q Consensus 81 ~N~l~g~~p~~-~~~~~~~~~~~~~n 105 (195)
+|.+++..+.. ..+..+..+.+.+|
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N 158 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNVAHN 158 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSS
T ss_pred CCcCCCCChhhhhcCcccCeeccccC
Confidence 99998544431 23344444444333
No 29
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.54 E-value=2.3e-14 Score=114.80 Aligned_cols=84 Identities=18% Similarity=0.145 Sum_probs=66.9
Q ss_pred EEEecCC-cCCCCcchhhcCCCCCcEEEccC-CCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 4 ATDLSSN-RFCGEIPKVLGNFKSLKVLNLSH-NSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 4 ~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
.++++++ .++ .+|. +..+++|+.|+|++ |.|++..+..|..|++|+.|+|++|.|++..|..|..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4677777 787 5677 88888888888885 888877777788888888888888888877777888888888888888
Q ss_pred CcCccCCC
Q 035751 82 NRLWGRIP 89 (195)
Q Consensus 82 N~l~g~~p 89 (195)
|.|++..+
T Consensus 90 N~l~~~~~ 97 (347)
T 2ifg_A 90 NALESLSW 97 (347)
T ss_dssp SCCSCCCS
T ss_pred CccceeCH
Confidence 88885443
No 30
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.54 E-value=7.7e-14 Score=104.06 Aligned_cols=106 Identities=25% Similarity=0.201 Sum_probs=86.5
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (208)
T 2o6s_A 53 SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLY 132 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECC
Confidence 58999999999997777778999999999999999997777778999999999999999997767778899999999999
Q ss_pred cCcCccCCCCC-CccCCCCcccccCCc
Q 035751 81 YNRLWGRIPRG-NQFNTFENDSYIGNI 106 (195)
Q Consensus 81 ~N~l~g~~p~~-~~~~~~~~~~~~~n~ 106 (195)
+|.+++..+.. ..+..+..+.+.+|+
T Consensus 133 ~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 133 QNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCccceeCHHHhccCCCccEEEecCCC
Confidence 99999554432 233444444444443
No 31
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.54 E-value=9.8e-15 Score=113.95 Aligned_cols=90 Identities=20% Similarity=0.208 Sum_probs=71.8
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|++|++++|.+++..|..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 106 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185 (285)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECC
Confidence 47788888888887777788888888888888888886666668888888888888888886555567778888888888
Q ss_pred cCcCccCCCC
Q 035751 81 YNRLWGRIPR 90 (195)
Q Consensus 81 ~N~l~g~~p~ 90 (195)
+|.+++..|.
T Consensus 186 ~n~l~~~~~~ 195 (285)
T 1ozn_A 186 QNRVAHVHPH 195 (285)
T ss_dssp SSCCCEECTT
T ss_pred CCcccccCHh
Confidence 8888766554
No 32
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.53 E-value=1.6e-14 Score=113.69 Aligned_cols=87 Identities=28% Similarity=0.366 Sum_probs=60.9
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCC-CCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTG-NIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNL 79 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l 79 (195)
+|++|++++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|.+++..|..+..+++|+.|++
T Consensus 127 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 206 (306)
T 2z66_A 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206 (306)
T ss_dssp TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEEC
Confidence 36677777777776666667777777777777777764 45666777777777777777777666666667777777777
Q ss_pred ccCcCccC
Q 035751 80 SYNRLWGR 87 (195)
Q Consensus 80 ~~N~l~g~ 87 (195)
++|.+++.
T Consensus 207 ~~N~l~~~ 214 (306)
T 2z66_A 207 SHNNFFSL 214 (306)
T ss_dssp TTSCCSBC
T ss_pred CCCccCcc
Confidence 77777643
No 33
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.53 E-value=2.2e-14 Score=118.62 Aligned_cols=110 Identities=25% Similarity=0.303 Sum_probs=81.2
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|++|+|++|.++ .+| .+..+++|+.|+|++|.+++..|..|..+++|+.|++++|.+++..+..+..+++|+.|+++
T Consensus 186 ~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 263 (440)
T 3zyj_A 186 NLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA 263 (440)
T ss_dssp SCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECT
T ss_pred ccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECC
Confidence 4677888888887 445 37788888888888888887778888888899999999999887778888888999999999
Q ss_pred cCcCccCCCCC-CccCCCCcccccCCccccCCCCCCCCC
Q 035751 81 YNRLWGRIPRG-NQFNTFENDSYIGNIHLCGEPLTVTCS 118 (195)
Q Consensus 81 ~N~l~g~~p~~-~~~~~~~~~~~~~n~~l~~~~~~~~c~ 118 (195)
+|.+++..+.. ..+..+.. ..+.+||+.|+|.
T Consensus 264 ~N~l~~~~~~~~~~l~~L~~------L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 264 HNNLTLLPHDLFTPLHHLER------IHLHHNPWNCNCD 296 (440)
T ss_dssp TSCCCCCCTTTTSSCTTCCE------EECCSSCEECSST
T ss_pred CCCCCccChhHhccccCCCE------EEcCCCCccCCCC
Confidence 99988444332 12233333 3455555666664
No 34
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=3.3e-14 Score=103.54 Aligned_cols=89 Identities=25% Similarity=0.236 Sum_probs=79.9
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|++|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence 58999999999997777778999999999999999997777778999999999999999996655567889999999999
Q ss_pred cCcCccCCC
Q 035751 81 YNRLWGRIP 89 (195)
Q Consensus 81 ~N~l~g~~p 89 (195)
+|++++..|
T Consensus 133 ~N~~~~~~~ 141 (177)
T 2o6r_A 133 TNPWDCSCP 141 (177)
T ss_dssp SSCBCCCHH
T ss_pred CCCeeccCc
Confidence 999997665
No 35
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.53 E-value=5.5e-15 Score=117.22 Aligned_cols=90 Identities=28% Similarity=0.543 Sum_probs=63.8
Q ss_pred CccEEEecC-CcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEc
Q 035751 1 MFRATDLSS-NRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNL 79 (195)
Q Consensus 1 ~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l 79 (195)
+|++|++++ |.+.+.+|..|+.+++|++|+|++|.+++.+|..|..+++|++|++++|.+++.+|..+..+++|++|++
T Consensus 77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 156 (313)
T 1ogq_A 77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156 (313)
T ss_dssp TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC
Confidence 366777774 7777677777777777777777777777667777777777777777777777667777777777777777
Q ss_pred ccCcCccCCCC
Q 035751 80 SYNRLWGRIPR 90 (195)
Q Consensus 80 ~~N~l~g~~p~ 90 (195)
++|.+++.+|.
T Consensus 157 ~~N~l~~~~p~ 167 (313)
T 1ogq_A 157 DGNRISGAIPD 167 (313)
T ss_dssp CSSCCEEECCG
T ss_pred cCCcccCcCCH
Confidence 77777666654
No 36
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.53 E-value=2.4e-14 Score=101.32 Aligned_cols=84 Identities=24% Similarity=0.317 Sum_probs=77.5
Q ss_pred CccEEEecCCcCC-CCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEc
Q 035751 1 MFRATDLSSNRFC-GEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNL 79 (195)
Q Consensus 1 ~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l 79 (195)
+|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 4789999999998 78898899999999999999999965 77899999999999999999778888888999999999
Q ss_pred ccCcCcc
Q 035751 80 SYNRLWG 86 (195)
Q Consensus 80 ~~N~l~g 86 (195)
++|.+++
T Consensus 96 s~N~i~~ 102 (149)
T 2je0_A 96 SGNKIKD 102 (149)
T ss_dssp TTSCCCS
T ss_pred CCCcCCC
Confidence 9999985
No 37
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.52 E-value=1.1e-13 Score=107.61 Aligned_cols=87 Identities=29% Similarity=0.285 Sum_probs=56.4
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|++|++++|.+++ + ..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 64 ~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 141 (272)
T 3rfs_A 64 NVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLA 141 (272)
T ss_dssp TCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECC
Confidence 35667777777664 2 356666777777777777765555556667777777777777765555556666777777777
Q ss_pred cCcCccCCC
Q 035751 81 YNRLWGRIP 89 (195)
Q Consensus 81 ~N~l~g~~p 89 (195)
+|.+++..+
T Consensus 142 ~n~l~~~~~ 150 (272)
T 3rfs_A 142 HNQLQSLPK 150 (272)
T ss_dssp SSCCCCCCT
T ss_pred CCccCccCH
Confidence 776664433
No 38
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.52 E-value=3.4e-14 Score=117.83 Aligned_cols=110 Identities=20% Similarity=0.244 Sum_probs=82.9
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|++|+|++|.+++ +| .+..+++|+.|+|++|.+++..|..|..+++|+.|++++|.+++..|..+..+++|+.|+++
T Consensus 197 ~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 274 (452)
T 3zyi_A 197 NLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA 274 (452)
T ss_dssp TCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECC
Confidence 47788888888884 34 47788888999999999888888889999999999999999988888888889999999999
Q ss_pred cCcCccCCCCC-CccCCCCcccccCCccccCCCCCCCCC
Q 035751 81 YNRLWGRIPRG-NQFNTFENDSYIGNIHLCGEPLTVTCS 118 (195)
Q Consensus 81 ~N~l~g~~p~~-~~~~~~~~~~~~~n~~l~~~~~~~~c~ 118 (195)
+|.+++..+.. ..+..+.. ..+.+||+.|+|.
T Consensus 275 ~N~l~~~~~~~~~~l~~L~~------L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 275 HNNLSSLPHDLFTPLRYLVE------LHLHHNPWNCDCD 307 (452)
T ss_dssp SSCCSCCCTTSSTTCTTCCE------EECCSSCEECSTT
T ss_pred CCcCCccChHHhccccCCCE------EEccCCCcCCCCC
Confidence 99998444332 12233333 3455556666664
No 39
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.51 E-value=4e-14 Score=102.16 Aligned_cols=103 Identities=21% Similarity=0.246 Sum_probs=82.9
Q ss_pred CccEEEecCCcCC-CCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEc
Q 035751 1 MFRATDLSSNRFC-GEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNL 79 (195)
Q Consensus 1 ~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l 79 (195)
+|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|+.|++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 4789999999998 77888889999999999999999855 77899999999999999999778888888999999999
Q ss_pred ccCcCccCC--CCCCccCCCCcccccCC
Q 035751 80 SYNRLWGRI--PRGNQFNTFENDSYIGN 105 (195)
Q Consensus 80 ~~N~l~g~~--p~~~~~~~~~~~~~~~n 105 (195)
++|.+++.. +....+..+..+.+.+|
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNC 130 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSS
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCC
Confidence 999998532 22223344444444444
No 40
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.49 E-value=1.2e-13 Score=110.25 Aligned_cols=104 Identities=18% Similarity=0.235 Sum_probs=79.9
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|++|+|++|.++ .+|..++.+++|++|+|++|.++ .+|..+..+++|++|++++|.+.+.+|..+..+++|+.|+++
T Consensus 184 ~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~ 261 (328)
T 4fcg_A 184 NLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261 (328)
T ss_dssp TCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECT
T ss_pred CCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECC
Confidence 4788888888888 77888888888888888888888 456678888888888888888888888888888888888888
Q ss_pred cCcCccCCCCC-CccCCCCcccccCCc
Q 035751 81 YNRLWGRIPRG-NQFNTFENDSYIGNI 106 (195)
Q Consensus 81 ~N~l~g~~p~~-~~~~~~~~~~~~~n~ 106 (195)
+|.+.+.+|.. ..+..+..+.+.+|.
T Consensus 262 ~n~~~~~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 262 DCSNLLTLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp TCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred CCCchhhcchhhhcCCCCCEEeCCCCC
Confidence 88888888764 223344444444443
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.49 E-value=1.2e-13 Score=110.26 Aligned_cols=104 Identities=17% Similarity=0.212 Sum_probs=82.8
Q ss_pred CccEEEecCCcCCCCcchhhcC---------CCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcC
Q 035751 1 MFRATDLSSNRFCGEIPKVLGN---------FKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSV 71 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~---------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l 71 (195)
+|++|+|++|++.+.+|..+.. +++|++|+|++|.++ .+|..+..+++|++|++++|.++ .+|..+..+
T Consensus 151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l 228 (328)
T 4fcg_A 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHL 228 (328)
T ss_dssp TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGC
T ss_pred CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccC
Confidence 4788999998888888877654 889999999999988 78888889999999999999998 467778889
Q ss_pred CCccEEEcccCcCccCCCCC-CccCCCCcccccCCc
Q 035751 72 TTLALLNLSYNRLWGRIPRG-NQFNTFENDSYIGNI 106 (195)
Q Consensus 72 ~~L~~L~l~~N~l~g~~p~~-~~~~~~~~~~~~~n~ 106 (195)
++|+.|++++|.+.+.+|.. ..+..+..+.+.+|.
T Consensus 229 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~ 264 (328)
T 4fcg_A 229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264 (328)
T ss_dssp TTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCT
T ss_pred CCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCC
Confidence 99999999998888888764 234445555554443
No 42
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.49 E-value=5.4e-14 Score=119.21 Aligned_cols=113 Identities=26% Similarity=0.347 Sum_probs=77.8
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCC-CCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLT-GNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNL 79 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l 79 (195)
+|++|++++|.+.+..|..+..+++|+.|++++|.++ +.+|..+..+++|++|++++|.+++..|..+..+++|+.|++
T Consensus 422 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence 3667777777777667777777777777777777776 457777777788888888888877666777777788888888
Q ss_pred ccCcCccCCCCCCccCCCCcccccCCccccCCCCCCCCC
Q 035751 80 SYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCS 118 (195)
Q Consensus 80 ~~N~l~g~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~c~ 118 (195)
++|.+++..|.. +..+..+....+.++++.|+|.
T Consensus 502 ~~n~l~~~~~~~-----~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 502 ASNQLKSVPDGI-----FDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp CSSCCSCCCTTT-----TTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCcCCCCCHHH-----hhcccCCcEEEecCCcccCCCc
Confidence 888877554432 2222233344556666666664
No 43
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.48 E-value=2.7e-13 Score=106.45 Aligned_cols=112 Identities=27% Similarity=0.301 Sum_probs=84.0
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|++|++++|.|++..|..|..+++|++|+|++|.+++..+..|..+++|+.|++++|+++...+..+..+++|+.|+++
T Consensus 101 ~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 180 (290)
T 1p9a_G 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180 (290)
T ss_dssp TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECC
Confidence 47889999999987777888889999999999999987777778888999999999999985555566778899999999
Q ss_pred cCcCccCCCCCCccCCCCcccccCCccccCCCCCCCCC
Q 035751 81 YNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCS 118 (195)
Q Consensus 81 ~N~l~g~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~c~ 118 (195)
+|.++ .+|.... ....+....+.+||+.|+|.
T Consensus 181 ~N~l~-~ip~~~~-----~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 181 ENSLY-TIPKGFF-----GSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp SSCCC-CCCTTTT-----TTCCCSEEECCSCCBCCSGG
T ss_pred CCcCC-ccChhhc-----ccccCCeEEeCCCCccCcCc
Confidence 99988 5555311 11122334555666666664
No 44
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.48 E-value=7e-14 Score=116.45 Aligned_cols=112 Identities=19% Similarity=0.192 Sum_probs=88.3
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|++|+|++|.+++..+..+..+++|+.|+|++|.+++..+..|..+++|+.|++++|.+++..|..+..+++|+.|+++
T Consensus 225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 304 (477)
T 2id5_A 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS 304 (477)
T ss_dssp CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECC
T ss_pred cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECC
Confidence 47889999999996555789999999999999999998888889999999999999999998889999999999999999
Q ss_pred cCcCccCCCCC-CccCCCCcccccCCccccCCCCCCCCC
Q 035751 81 YNRLWGRIPRG-NQFNTFENDSYIGNIHLCGEPLTVTCS 118 (195)
Q Consensus 81 ~N~l~g~~p~~-~~~~~~~~~~~~~n~~l~~~~~~~~c~ 118 (195)
+|.+++..+.. ..+..+..+ .+.+||+.|+|.
T Consensus 305 ~N~l~~~~~~~~~~l~~L~~L------~l~~N~l~c~c~ 337 (477)
T 2id5_A 305 GNQLTTLEESVFHSVGNLETL------ILDSNPLACDCR 337 (477)
T ss_dssp SSCCSCCCGGGBSCGGGCCEE------ECCSSCEECSGG
T ss_pred CCcCceeCHhHcCCCcccCEE------EccCCCccCccc
Confidence 99998543321 122333444 444455555553
No 45
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.48 E-value=8.9e-14 Score=122.47 Aligned_cols=89 Identities=43% Similarity=0.582 Sum_probs=50.9
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
|+.|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++
T Consensus 444 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 523 (768)
T 3rgz_A 444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred CCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCC
Confidence 45555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CcCccCCCC
Q 035751 82 NRLWGRIPR 90 (195)
Q Consensus 82 N~l~g~~p~ 90 (195)
|.++|.+|.
T Consensus 524 N~l~~~~p~ 532 (768)
T 3rgz_A 524 NSFSGNIPA 532 (768)
T ss_dssp SCCEEECCG
T ss_pred CcccCcCCH
Confidence 555555554
No 46
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.47 E-value=1.1e-13 Score=102.58 Aligned_cols=101 Identities=14% Similarity=0.178 Sum_probs=76.1
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|++|++++|.++ .+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|+.|+++
T Consensus 67 ~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~ 144 (197)
T 4ezg_A 67 NIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144 (197)
T ss_dssp TCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECC
T ss_pred CCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEcc
Confidence 4788888888766 33468888889999999888887778888888889999999988887778888888888889988
Q ss_pred cCc-CccCCCCCCccCCCCcccccC
Q 035751 81 YNR-LWGRIPRGNQFNTFENDSYIG 104 (195)
Q Consensus 81 ~N~-l~g~~p~~~~~~~~~~~~~~~ 104 (195)
+|. ++ .+|....+..+..+.+.+
T Consensus 145 ~n~~i~-~~~~l~~l~~L~~L~l~~ 168 (197)
T 4ezg_A 145 YNGAIT-DIMPLKTLPELKSLNIQF 168 (197)
T ss_dssp SCTBCC-CCGGGGGCSSCCEEECTT
T ss_pred CCCCcc-ccHhhcCCCCCCEEECCC
Confidence 887 54 555433334444444433
No 47
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.47 E-value=8.5e-14 Score=100.42 Aligned_cols=87 Identities=23% Similarity=0.203 Sum_probs=76.6
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCC-chhhhcCCCccEEEc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRI-PKQLLSVTTLALLNL 79 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~L~l 79 (195)
+|+.|++++|.+++. ..+..+++|+.|++++|.+++.+|..+..+++|++|++++|.+++.. +..+..+++|+.|++
T Consensus 50 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l 127 (168)
T 2ell_A 50 NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL 127 (168)
T ss_dssp GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEEC
T ss_pred CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEe
Confidence 478999999999965 77899999999999999999778888888999999999999998542 278889999999999
Q ss_pred ccCcCccCCC
Q 035751 80 SYNRLWGRIP 89 (195)
Q Consensus 80 ~~N~l~g~~p 89 (195)
++|.+++..+
T Consensus 128 ~~N~l~~~~~ 137 (168)
T 2ell_A 128 FNCEVTNLND 137 (168)
T ss_dssp CSSGGGTSTT
T ss_pred eCCcCcchHH
Confidence 9999985443
No 48
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.46 E-value=6.2e-13 Score=103.05 Aligned_cols=88 Identities=27% Similarity=0.330 Sum_probs=68.9
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|++|+|++|.++...+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 62 ~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 141 (270)
T 2o6q_A 62 KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG 141 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECC
Confidence 47788888888886555666788888888888888886666677888888888888888887666677788888888888
Q ss_pred cCcCccCC
Q 035751 81 YNRLWGRI 88 (195)
Q Consensus 81 ~N~l~g~~ 88 (195)
+|.+++..
T Consensus 142 ~n~l~~~~ 149 (270)
T 2o6q_A 142 YNELQSLP 149 (270)
T ss_dssp SSCCCCCC
T ss_pred CCcCCccC
Confidence 88887433
No 49
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.46 E-value=1.4e-13 Score=110.26 Aligned_cols=86 Identities=24% Similarity=0.213 Sum_probs=76.6
Q ss_pred CccEEEecC-CcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEc
Q 035751 1 MFRATDLSS-NRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNL 79 (195)
Q Consensus 1 ~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l 79 (195)
+|+.|+|++ |.|.+..+..|..|++|+.|+|++|.|++..|..|..|++|++|+|++|.|++..+..+..+. |+.|+|
T Consensus 32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l 110 (347)
T 2ifg_A 32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVL 110 (347)
T ss_dssp CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEEC
T ss_pred CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEe
Confidence 489999996 999988888999999999999999999999899999999999999999999965555555555 999999
Q ss_pred ccCcCccC
Q 035751 80 SYNRLWGR 87 (195)
Q Consensus 80 ~~N~l~g~ 87 (195)
.+|++.+.
T Consensus 111 ~~N~~~c~ 118 (347)
T 2ifg_A 111 SGNPLHCS 118 (347)
T ss_dssp CSSCCCCC
T ss_pred eCCCccCC
Confidence 99999853
No 50
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.46 E-value=1e-13 Score=118.55 Aligned_cols=113 Identities=21% Similarity=0.294 Sum_probs=68.1
Q ss_pred ccEEEecCCcCCC-CcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 2 FRATDLSSNRFCG-EIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 2 L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
|++|++++|.+++ .+|..+..+++|+.|++++|.+++..|..|..+++|++|++++|.+++..|..+..+++|+.|+++
T Consensus 450 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~ 529 (606)
T 3vq2_A 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS 529 (606)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECT
T ss_pred CCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECC
Confidence 5566666666654 255556666666666666666666666666666666666666666666566666666666677777
Q ss_pred cCcCccCCCCCCccCCCCcccccCCccccCCCCCCCCCC
Q 035751 81 YNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCSN 119 (195)
Q Consensus 81 ~N~l~g~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~c~~ 119 (195)
+|.++ .+|.. +..+. ..+....+.+||+.|+|..
T Consensus 530 ~N~l~-~~p~~--~~~l~--~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 530 FNRIE-TSKGI--LQHFP--KSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp TSCCC-CEESC--GGGSC--TTCCEEECCSCCCCCSSTT
T ss_pred CCcCc-ccCHh--Hhhhc--ccCcEEEccCCCcccCCcc
Confidence 66666 44443 11111 0123345667777777763
No 51
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.45 E-value=7.2e-14 Score=98.86 Aligned_cols=87 Identities=22% Similarity=0.194 Sum_probs=77.6
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCC-CchhhhcCCCccEEEc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGR-IPKQLLSVTTLALLNL 79 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~L~l 79 (195)
+|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++. .+..+..+++|+.|++
T Consensus 43 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l 120 (149)
T 2je0_A 43 ELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120 (149)
T ss_dssp TCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred CCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence 589999999999966 7799999999999999999977898888899999999999999963 3478899999999999
Q ss_pred ccCcCccCCC
Q 035751 80 SYNRLWGRIP 89 (195)
Q Consensus 80 ~~N~l~g~~p 89 (195)
++|.+++..+
T Consensus 121 ~~N~l~~~~~ 130 (149)
T 2je0_A 121 FNCEVTNLND 130 (149)
T ss_dssp TTCGGGGSTT
T ss_pred cCCcccchHH
Confidence 9999985543
No 52
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.45 E-value=2.2e-13 Score=109.97 Aligned_cols=90 Identities=26% Similarity=0.150 Sum_probs=80.5
Q ss_pred CccEEEecCCcCCCCcchhhc-CCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEc
Q 035751 1 MFRATDLSSNRFCGEIPKVLG-NFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNL 79 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l 79 (195)
+++.|+|++|.|++..+..+. .+++|+.|+|++|.|++..+..|..+++|++|+|++|.|++..+..|..+++|+.|+|
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 368899999999987777787 9999999999999999777788999999999999999999777778999999999999
Q ss_pred ccCcCccCCCC
Q 035751 80 SYNRLWGRIPR 90 (195)
Q Consensus 80 ~~N~l~g~~p~ 90 (195)
++|.+++..|.
T Consensus 120 ~~N~i~~~~~~ 130 (361)
T 2xot_A 120 YNNHIVVVDRN 130 (361)
T ss_dssp CSSCCCEECTT
T ss_pred CCCcccEECHH
Confidence 99999866554
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.45 E-value=6.5e-13 Score=103.55 Aligned_cols=84 Identities=25% Similarity=0.252 Sum_probs=41.9
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCC-CCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNS-LTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
|++|++++|.+++..|..|..+++|++|++++|. ++...|..|..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus 58 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 137 (285)
T 1ozn_A 58 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137 (285)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECC
Confidence 4445555555544444445555555555555554 443334445555555555555555554444444455555555555
Q ss_pred cCcCc
Q 035751 81 YNRLW 85 (195)
Q Consensus 81 ~N~l~ 85 (195)
+|.++
T Consensus 138 ~n~l~ 142 (285)
T 1ozn_A 138 DNALQ 142 (285)
T ss_dssp SSCCC
T ss_pred CCccc
Confidence 55554
No 54
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.44 E-value=3.4e-13 Score=115.10 Aligned_cols=99 Identities=25% Similarity=0.276 Sum_probs=81.6
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
|+.|+|++|.|++ +|. ++.+++|+.|+|++|.|+ .+|..++.+++|++|++++|.|++ +| .+..+++|+.|++++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 6789999999995 676 899999999999999999 889999999999999999999995 67 788999999999999
Q ss_pred CcCccCC-CCC-CccCCCCcccccCC
Q 035751 82 NRLWGRI-PRG-NQFNTFENDSYIGN 105 (195)
Q Consensus 82 N~l~g~~-p~~-~~~~~~~~~~~~~n 105 (195)
|.+++.. |.. ..+..+..+.+.+|
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCC
Confidence 9999765 543 23444454454444
No 55
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.44 E-value=4.2e-13 Score=104.20 Aligned_cols=88 Identities=19% Similarity=0.128 Sum_probs=60.9
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 36677777777776555567777777777777777775555567777777777777777776655666667777777777
Q ss_pred cCcCccCC
Q 035751 81 YNRLWGRI 88 (195)
Q Consensus 81 ~N~l~g~~ 88 (195)
+|.+++..
T Consensus 109 ~n~l~~~~ 116 (276)
T 2z62_A 109 ETNLASLE 116 (276)
T ss_dssp TSCCCCST
T ss_pred CCCccccC
Confidence 77666433
No 56
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.44 E-value=9.7e-14 Score=118.69 Aligned_cols=89 Identities=24% Similarity=0.265 Sum_probs=59.6
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCC---CccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEE
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGN---IPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALL 77 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L 77 (195)
+|++|++++|.+++..|..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..|..+..+++|+.|
T Consensus 426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 505 (606)
T 3t6q_A 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505 (606)
T ss_dssp TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEE
Confidence 366777777777766666677777777777777776642 22456666777777777777766666666666777777
Q ss_pred EcccCcCccCCC
Q 035751 78 NLSYNRLWGRIP 89 (195)
Q Consensus 78 ~l~~N~l~g~~p 89 (195)
++++|.+++..|
T Consensus 506 ~Ls~N~l~~~~~ 517 (606)
T 3t6q_A 506 DLSHNRLTSSSI 517 (606)
T ss_dssp ECCSSCCCGGGG
T ss_pred ECCCCccCcCCh
Confidence 777776665544
No 57
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.43 E-value=4e-13 Score=110.99 Aligned_cols=105 Identities=23% Similarity=0.272 Sum_probs=90.4
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|+.|++++|.+.+..|..+..+++|+.|++++|.+++..|..|..+++|++|++++|.+++..|..+..+++|+.|+++
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 355 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence 47899999999999899999999999999999999998888899999999999999999998888899999999999999
Q ss_pred cCcCccCCCCC-CccCCCCcccccCC
Q 035751 81 YNRLWGRIPRG-NQFNTFENDSYIGN 105 (195)
Q Consensus 81 ~N~l~g~~p~~-~~~~~~~~~~~~~n 105 (195)
+|.+++..|.. ..+..+..+.+.+|
T Consensus 356 ~N~l~~~~~~~~~~l~~L~~L~L~~N 381 (455)
T 3v47_A 356 YNHIRALGDQSFLGLPNLKELALDTN 381 (455)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCcccccChhhccccccccEEECCCC
Confidence 99999776653 23344444444443
No 58
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.42 E-value=4.8e-13 Score=113.05 Aligned_cols=86 Identities=27% Similarity=0.207 Sum_probs=76.7
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|++|+|++|.+++..|..|..+++|++|+|++|.+++..|..|..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 106 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence 47889999999998888889999999999999999998888889999999999999999997777778899999999999
Q ss_pred cCcCcc
Q 035751 81 YNRLWG 86 (195)
Q Consensus 81 ~N~l~g 86 (195)
+|.+++
T Consensus 107 ~n~l~~ 112 (549)
T 2z81_A 107 GNPYQT 112 (549)
T ss_dssp TCCCSS
T ss_pred CCcccc
Confidence 999885
No 59
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.42 E-value=1.1e-12 Score=104.21 Aligned_cols=83 Identities=25% Similarity=0.294 Sum_probs=47.2
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++
T Consensus 194 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~ 272 (330)
T 1xku_A 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHN 272 (330)
T ss_dssp CSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCS
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCC
Confidence 455555555555544555555555555566555555444445555555556666555555 4555555555555566655
Q ss_pred CcCc
Q 035751 82 NRLW 85 (195)
Q Consensus 82 N~l~ 85 (195)
|.++
T Consensus 273 N~i~ 276 (330)
T 1xku_A 273 NNIS 276 (330)
T ss_dssp SCCC
T ss_pred CcCC
Confidence 5555
No 60
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.42 E-value=5.1e-13 Score=98.93 Aligned_cols=101 Identities=16% Similarity=0.118 Sum_probs=76.6
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|+.|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 4788999999988 556 5888899999999999766 33478889999999999999987677888888999999999
Q ss_pred cCcCccCCCC-CCccCCCCcccccCC
Q 035751 81 YNRLWGRIPR-GNQFNTFENDSYIGN 105 (195)
Q Consensus 81 ~N~l~g~~p~-~~~~~~~~~~~~~~n 105 (195)
+|.+++..|. ...+..+..+.+.+|
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n 146 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYN 146 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSC
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCC
Confidence 9998864443 123344444444444
No 61
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.41 E-value=1.9e-13 Score=104.02 Aligned_cols=97 Identities=14% Similarity=0.149 Sum_probs=79.9
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCC-CCCCCccccCCCCCCcEEeCCC-CcCCCCCchhhhcCCCccEEE
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNS-LTGNIPVSFDNMTALESLDLSF-NKLEGRIPKQLLSVTTLALLN 78 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~l~~-N~l~~~~p~~~~~l~~L~~L~ 78 (195)
+|++|++++|.+++..+..|..+++|++|++++|. ++...+..|..+++|++|++++ |.+++..+..+..+++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 47889999999997777789999999999999997 8866666889999999999998 999866667888899999999
Q ss_pred cccCcCccCCCCCCccCCCC
Q 035751 79 LSYNRLWGRIPRGNQFNTFE 98 (195)
Q Consensus 79 l~~N~l~g~~p~~~~~~~~~ 98 (195)
+++|.+++ +|....+..+.
T Consensus 112 l~~n~l~~-lp~~~~l~~L~ 130 (239)
T 2xwt_C 112 IFNTGLKM-FPDLTKVYSTD 130 (239)
T ss_dssp EEEECCCS-CCCCTTCCBCC
T ss_pred CCCCCCcc-ccccccccccc
Confidence 99999985 66533344444
No 62
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.41 E-value=5.5e-13 Score=113.83 Aligned_cols=88 Identities=32% Similarity=0.415 Sum_probs=81.0
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCC-chhhhcCCCccEEEc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRI-PKQLLSVTTLALLNL 79 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~L~l 79 (195)
+|+.|+|++|.|+ .+|..++.+++|+.|+|++|.|++ +| .++.+++|++|++++|.|++.. |..+..+++|+.|++
T Consensus 464 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L 540 (567)
T 1dce_A 464 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540 (567)
T ss_dssp TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred cCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEe
Confidence 5899999999999 889999999999999999999995 67 8999999999999999999776 999999999999999
Q ss_pred ccCcCccCCCCC
Q 035751 80 SYNRLWGRIPRG 91 (195)
Q Consensus 80 ~~N~l~g~~p~~ 91 (195)
++|++++.+|..
T Consensus 541 ~~N~l~~~~~~~ 552 (567)
T 1dce_A 541 QGNSLCQEEGIQ 552 (567)
T ss_dssp TTSGGGGSSSCT
T ss_pred cCCcCCCCccHH
Confidence 999999776643
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.41 E-value=7.1e-13 Score=109.90 Aligned_cols=87 Identities=22% Similarity=0.158 Sum_probs=76.5
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
++++|+|++|.|++..|..|..+++|+.|+|++|.+++..|..|..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence 47889999999998888889999999999999999998888889999999999999999986666678889999999999
Q ss_pred cCcCccC
Q 035751 81 YNRLWGR 87 (195)
Q Consensus 81 ~N~l~g~ 87 (195)
+|.+++.
T Consensus 156 ~N~l~~~ 162 (452)
T 3zyi_A 156 NNPIESI 162 (452)
T ss_dssp SCCCCEE
T ss_pred CCCccee
Confidence 9998843
No 64
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.41 E-value=5.6e-13 Score=113.95 Aligned_cols=85 Identities=16% Similarity=0.086 Sum_probs=57.0
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
+++|+|++|.+++..|..|..+++|++|+|++|.+++..|..|..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 35 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 114 (606)
T 3t6q_A 35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQ 114 (606)
T ss_dssp CCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTT
T ss_pred CcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccc
Confidence 56667777777666666666677777777777766666666666666777777776666655666666666666666666
Q ss_pred CcCcc
Q 035751 82 NRLWG 86 (195)
Q Consensus 82 N~l~g 86 (195)
|.+++
T Consensus 115 n~i~~ 119 (606)
T 3t6q_A 115 TGISS 119 (606)
T ss_dssp SCCSC
T ss_pred cCccc
Confidence 66654
No 65
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.41 E-value=1.1e-12 Score=112.41 Aligned_cols=90 Identities=18% Similarity=0.116 Sum_probs=66.7
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|++|+|++|.+++..|..|+.+++|+.|+|++|.+++..|..|+.+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls 155 (597)
T 3oja_B 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 155 (597)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee
Confidence 46777888888877666677778888888888888777777777777888888888887774444445777778888888
Q ss_pred cCcCccCCCC
Q 035751 81 YNRLWGRIPR 90 (195)
Q Consensus 81 ~N~l~g~~p~ 90 (195)
+|.+++..|.
T Consensus 156 ~N~l~~~~~~ 165 (597)
T 3oja_B 156 NNNLERIEDD 165 (597)
T ss_dssp SSCCCBCCTT
T ss_pred CCcCCCCChh
Confidence 8877765554
No 66
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.41 E-value=8.8e-13 Score=110.87 Aligned_cols=83 Identities=29% Similarity=0.389 Sum_probs=46.5
Q ss_pred ccEEEecCCcCCC--CcchhhcCCCCCcEEEccCCCCCCCCccc-cCCCCC----------------------CcEEeCC
Q 035751 2 FRATDLSSNRFCG--EIPKVLGNFKSLKVLNLSHNSLTGNIPVS-FDNMTA----------------------LESLDLS 56 (195)
Q Consensus 2 L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~----------------------L~~L~l~ 56 (195)
|++|++++|.+++ .+|..+..+++|++|++++|.+++.+|.. +..+++ |++|+++
T Consensus 350 L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls 429 (520)
T 2z7x_B 350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLH 429 (520)
T ss_dssp CCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECC
T ss_pred CCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECC
Confidence 5666666666664 34455666666666666666666534432 444444 5555555
Q ss_pred CCcCCCCCchhhhcCCCccEEEcccCcCc
Q 035751 57 FNKLEGRIPKQLLSVTTLALLNLSYNRLW 85 (195)
Q Consensus 57 ~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 85 (195)
+|.++ .+|..+..+++|+.|++++|.++
T Consensus 430 ~N~l~-~ip~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 430 SNKIK-SIPKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp SSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCccc-ccchhhhcCCCCCEEECCCCcCC
Confidence 55554 44554555555666666666555
No 67
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.41 E-value=2e-13 Score=99.34 Aligned_cols=100 Identities=18% Similarity=0.152 Sum_probs=75.8
Q ss_pred CccEEEecCCcCCCCcchhhcCCC-CCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFK-SLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNL 79 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l 79 (195)
+|+.|++++|.++ .+|. +..+. +|+.|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus 20 ~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 20 RDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp SCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred CceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 4789999999999 4555 44444 999999999999954 67899999999999999999655555688999999999
Q ss_pred ccCcCccCCCC---CCccCCCCcccccCC
Q 035751 80 SYNRLWGRIPR---GNQFNTFENDSYIGN 105 (195)
Q Consensus 80 ~~N~l~g~~p~---~~~~~~~~~~~~~~n 105 (195)
++|.++ .+|. ...+..+..+.+.+|
T Consensus 96 ~~N~i~-~~~~~~~l~~l~~L~~L~l~~N 123 (176)
T 1a9n_A 96 TNNSLV-ELGDLDPLASLKSLTYLCILRN 123 (176)
T ss_dssp CSCCCC-CGGGGGGGGGCTTCCEEECCSS
T ss_pred CCCcCC-cchhhHhhhcCCCCCEEEecCC
Confidence 999996 4554 222334444444444
No 68
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.41 E-value=7.6e-13 Score=106.26 Aligned_cols=104 Identities=24% Similarity=0.227 Sum_probs=81.5
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|++|++++|.+++..+..|..+++|+.|++++|.+++..|..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 47889999999997666688999999999999999997777889999999999999999985555558889999999999
Q ss_pred cCcCccCCCC---CCccCCCCcccccCC
Q 035751 81 YNRLWGRIPR---GNQFNTFENDSYIGN 105 (195)
Q Consensus 81 ~N~l~g~~p~---~~~~~~~~~~~~~~n 105 (195)
+|.++ .+|. ...+..+..+.+.+|
T Consensus 133 ~n~l~-~l~~~~~~~~l~~L~~L~l~~n 159 (353)
T 2z80_A 133 GNPYK-TLGETSLFSHLTKLQILRVGNM 159 (353)
T ss_dssp TCCCS-SSCSSCSCTTCTTCCEEEEEES
T ss_pred CCCCc-ccCchhhhccCCCCcEEECCCC
Confidence 99988 4544 223444444444444
No 69
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.40 E-value=9.1e-13 Score=112.64 Aligned_cols=86 Identities=22% Similarity=0.186 Sum_probs=57.0
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
|++|+|++|.+++..+..|.++++|++|+|++|.+++..|..|..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 34 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 113 (606)
T 3vq2_A 34 TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 113 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTT
T ss_pred cCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccC
Confidence 56666777766665555666666667777766666655566666666666666666666655566666666666666666
Q ss_pred CcCccC
Q 035751 82 NRLWGR 87 (195)
Q Consensus 82 N~l~g~ 87 (195)
|.+++.
T Consensus 114 n~l~~~ 119 (606)
T 3vq2_A 114 TKLASL 119 (606)
T ss_dssp SCCCCS
T ss_pred Cccccc
Confidence 666543
No 70
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.40 E-value=1.8e-12 Score=105.38 Aligned_cols=90 Identities=18% Similarity=0.116 Sum_probs=64.6
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|++|++++|.+++..+..|..+++|++|+|++|.+++..|..|+.+++|++|++++|.++...+..+..+++|++|+++
T Consensus 70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 149 (390)
T 3o6n_A 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 149 (390)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECC
Confidence 46777777777776666677777778888888877776666777777778888888777774333345677777777777
Q ss_pred cCcCccCCCC
Q 035751 81 YNRLWGRIPR 90 (195)
Q Consensus 81 ~N~l~g~~p~ 90 (195)
+|.+++..|.
T Consensus 150 ~n~l~~~~~~ 159 (390)
T 3o6n_A 150 NNNLERIEDD 159 (390)
T ss_dssp SSCCCBCCTT
T ss_pred CCccCccChh
Confidence 7777755443
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.39 E-value=9.5e-13 Score=102.15 Aligned_cols=84 Identities=19% Similarity=0.146 Sum_probs=45.1
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 54 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 133 (276)
T 2z62_A 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133 (276)
T ss_dssp CSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS
T ss_pred CcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcC
Confidence 45555655555544444555555555555555555544445555555555555555555543333444555555555555
Q ss_pred CcCc
Q 035751 82 NRLW 85 (195)
Q Consensus 82 N~l~ 85 (195)
|.++
T Consensus 134 n~l~ 137 (276)
T 2z62_A 134 NLIQ 137 (276)
T ss_dssp SCCC
T ss_pred Cccc
Confidence 5554
No 72
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.39 E-value=5.7e-13 Score=104.84 Aligned_cols=90 Identities=20% Similarity=0.284 Sum_probs=66.8
Q ss_pred CccEEEecCCcCCCCcc-hhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCC-CCchhhhcCCCccEEE
Q 035751 1 MFRATDLSSNRFCGEIP-KVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEG-RIPKQLLSVTTLALLN 78 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~-~~p~~~~~l~~L~~L~ 78 (195)
+|++|++++|.+++..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++ .+|..+..+++|+.|+
T Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 181 (306)
T 2z66_A 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181 (306)
T ss_dssp TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEE
Confidence 46778888887775544 467777888888888888777777777778888888888887765 4667777778888888
Q ss_pred cccCcCccCCCC
Q 035751 79 LSYNRLWGRIPR 90 (195)
Q Consensus 79 l~~N~l~g~~p~ 90 (195)
+++|.+++..|.
T Consensus 182 Ls~n~l~~~~~~ 193 (306)
T 2z66_A 182 LSQCQLEQLSPT 193 (306)
T ss_dssp CTTSCCCEECTT
T ss_pred CCCCCcCCcCHH
Confidence 888887765453
No 73
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.39 E-value=5.8e-13 Score=115.37 Aligned_cols=119 Identities=19% Similarity=0.271 Sum_probs=78.5
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCC--------ccccCCCCCCcEEeCCCCcCCCCCchhhhcCC
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNI--------PVSFDNMTALESLDLSFNKLEGRIPKQLLSVT 72 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--------p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~ 72 (195)
+|+.|++++|.+++..+..|..+++|+.|++++|.+++.. +..|..+++|++|++++|.++...+..+..++
T Consensus 481 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~ 560 (680)
T 1ziw_A 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF 560 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccccc
Confidence 4778888888888777777888888888888888877431 12367777888888888887743334577777
Q ss_pred CccEEEcccCcCccCCCCC-CccCCCCcccc-------------------cCCccccCCCCCCCCCC
Q 035751 73 TLALLNLSYNRLWGRIPRG-NQFNTFENDSY-------------------IGNIHLCGEPLTVTCSN 119 (195)
Q Consensus 73 ~L~~L~l~~N~l~g~~p~~-~~~~~~~~~~~-------------------~~n~~l~~~~~~~~c~~ 119 (195)
+|+.|++++|.+++..+.. ..+..+..+.+ +....+.+||+.|+|..
T Consensus 561 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 561 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 7888888888777433321 12222222222 22345668889988874
No 74
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.39 E-value=8.8e-13 Score=115.58 Aligned_cols=101 Identities=29% Similarity=0.391 Sum_probs=78.6
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|+.|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..|..+++|++|+|++|.|+ .+|..+..+++|++|+|+
T Consensus 225 ~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~ 301 (727)
T 4b8c_D 225 LWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFF 301 (727)
T ss_dssp CCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECC
T ss_pred CCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECC
Confidence 4778889998888 67777778888999999999888 78888888889999999999888 778888888889999999
Q ss_pred cCcCccCCCCC-CccCCCCcccccCC
Q 035751 81 YNRLWGRIPRG-NQFNTFENDSYIGN 105 (195)
Q Consensus 81 ~N~l~g~~p~~-~~~~~~~~~~~~~n 105 (195)
+|.|+ .+|.. ..+..+..+.+.+|
T Consensus 302 ~N~l~-~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 302 DNMVT-TLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp SSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred CCCCC-ccChhhhcCCCccEEeCCCC
Confidence 88887 66653 22334444444333
No 75
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.39 E-value=1.4e-12 Score=110.94 Aligned_cols=112 Identities=27% Similarity=0.376 Sum_probs=59.1
Q ss_pred CccEEEecCCcCCCC--cchhhcCCCCCcEEEccCCCCCCCCcc-ccCCCC----------------------CCcEEeC
Q 035751 1 MFRATDLSSNRFCGE--IPKVLGNFKSLKVLNLSHNSLTGNIPV-SFDNMT----------------------ALESLDL 55 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~----------------------~L~~L~l 55 (195)
+|++|++++|.+++. +|..+..+++|+.|++++|.+++.+|. .+..++ +|++|++
T Consensus 378 ~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L 457 (562)
T 3a79_B 378 RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDL 457 (562)
T ss_dssp SCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEEC
T ss_pred CCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEEC
Confidence 356677777777642 234566667777777777776653443 244444 4555555
Q ss_pred CCCcCCCCCchhhhcCCCccEEEcccCcCccCCCCCCccCCCCcccccCCccccCCCCCCCCC
Q 035751 56 SFNKLEGRIPKQLLSVTTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVTCS 118 (195)
Q Consensus 56 ~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~l~~~~~~~~c~ 118 (195)
++|+++ .+|..+..+++|+.|++++|.++ .+|.. .+..+..+....+.+||+.|+|.
T Consensus 458 ~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~----~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 458 HNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDG----VFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTT----STTTCTTCCCEECCSCCBCCCHH
T ss_pred CCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHH----HHhcCCCCCEEEecCCCcCCCcc
Confidence 555554 44444445566666666666665 34432 11222222233445555555553
No 76
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.39 E-value=2.1e-12 Score=111.59 Aligned_cols=87 Identities=18% Similarity=0.284 Sum_probs=52.7
Q ss_pred ccEEEecCCcCCCCcchhhc--CCCCCcEEEccCCCCCCCCccccCCCCCCcEEeC------CCCcCCCCCchhhhcCCC
Q 035751 2 FRATDLSSNRFCGEIPKVLG--NFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDL------SFNKLEGRIPKQLLSVTT 73 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l------~~N~l~~~~p~~~~~l~~ 73 (195)
|+.|+|++|.++ .+|..+. .+++|+.|+|++|.+++ +|..+..+++|++|++ ++|.+.+.+|..+..+++
T Consensus 490 L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~ 567 (636)
T 4eco_A 490 LTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS 567 (636)
T ss_dssp CCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSS
T ss_pred ccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCC
Confidence 556666666666 4555554 66666666666666664 5666666666666666 345555566666666666
Q ss_pred ccEEEcccCcCccCCCCC
Q 035751 74 LALLNLSYNRLWGRIPRG 91 (195)
Q Consensus 74 L~~L~l~~N~l~g~~p~~ 91 (195)
|+.|++++|.+ +.+|..
T Consensus 568 L~~L~Ls~N~l-~~ip~~ 584 (636)
T 4eco_A 568 LTQLQIGSNDI-RKVNEK 584 (636)
T ss_dssp CCEEECCSSCC-CBCCSC
T ss_pred CCEEECCCCcC-CccCHh
Confidence 66666666666 355543
No 77
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.39 E-value=1.3e-12 Score=108.78 Aligned_cols=86 Identities=26% Similarity=0.291 Sum_probs=46.7
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
++.|+|++|.+++..|..|..+++|++|+|++|.+++..|..|..+++|++|++++|.++...+..+..+++|++|++++
T Consensus 34 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 113 (477)
T 2id5_A 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISE 113 (477)
T ss_dssp CSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTT
T ss_pred CcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCC
Confidence 45555555555555455555555555555555555555455555555555555555555533333444555555555555
Q ss_pred CcCccC
Q 035751 82 NRLWGR 87 (195)
Q Consensus 82 N~l~g~ 87 (195)
|.+++.
T Consensus 114 n~i~~~ 119 (477)
T 2id5_A 114 NKIVIL 119 (477)
T ss_dssp SCCCEE
T ss_pred CccccC
Confidence 555433
No 78
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.38 E-value=3.9e-13 Score=116.14 Aligned_cols=89 Identities=16% Similarity=0.360 Sum_probs=56.0
Q ss_pred CccEEEecCCcCCCC-----------------cchhhc--CCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCc-C
Q 035751 1 MFRATDLSSNRFCGE-----------------IPKVLG--NFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNK-L 60 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~-----------------~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~-l 60 (195)
+|++|+|++|.+++. +|..++ .+++|++|+|++|.+.+.+|..|+.+++|++|++++|. +
T Consensus 207 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l 286 (636)
T 4eco_A 207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286 (636)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS
T ss_pred CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC
Confidence 366677777777654 666666 67777777777777666677667777777777777766 6
Q ss_pred CC-CCchhhhcC------CCccEEEcccCcCccCCCC
Q 035751 61 EG-RIPKQLLSV------TTLALLNLSYNRLWGRIPR 90 (195)
Q Consensus 61 ~~-~~p~~~~~l------~~L~~L~l~~N~l~g~~p~ 90 (195)
++ .+|..+..+ ++|+.|++++|.++ .+|.
T Consensus 287 ~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~ 322 (636)
T 4eco_A 287 SGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPV 322 (636)
T ss_dssp CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCC
T ss_pred ccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCc
Confidence 65 455555443 55555555555555 4443
No 79
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.38 E-value=1.2e-12 Score=95.12 Aligned_cols=86 Identities=22% Similarity=0.179 Sum_probs=73.7
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCch--hhhcCCCccEEE
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPK--QLLSVTTLALLN 78 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~--~~~~l~~L~~L~ 78 (195)
+|+.|++++|.+++. ..+..+++|++|+|++|.+++..+..|..+++|++|++++|.++ .+|. .+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence 588999999999964 67899999999999999999655555689999999999999997 5666 788999999999
Q ss_pred cccCcCccCCCC
Q 035751 79 LSYNRLWGRIPR 90 (195)
Q Consensus 79 l~~N~l~g~~p~ 90 (195)
+++|+++ .+|.
T Consensus 120 l~~N~i~-~~~~ 130 (176)
T 1a9n_A 120 ILRNPVT-NKKH 130 (176)
T ss_dssp CCSSGGG-GSTT
T ss_pred ecCCCCC-CcHh
Confidence 9999998 4443
No 80
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.38 E-value=1.3e-12 Score=103.96 Aligned_cols=84 Identities=25% Similarity=0.275 Sum_probs=59.7
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++
T Consensus 195 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~ 273 (332)
T 2ft3_A 195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHT 273 (332)
T ss_dssp CSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCS
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCC
Confidence 566677777777666666777777777777777777666666777777777777777776 6666677777777777777
Q ss_pred CcCcc
Q 035751 82 NRLWG 86 (195)
Q Consensus 82 N~l~g 86 (195)
|.+++
T Consensus 274 N~l~~ 278 (332)
T 2ft3_A 274 NNITK 278 (332)
T ss_dssp SCCCB
T ss_pred CCCCc
Confidence 77763
No 81
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.37 E-value=1.9e-13 Score=108.13 Aligned_cols=86 Identities=21% Similarity=0.211 Sum_probs=60.7
Q ss_pred CccEEEecCCcCCCCcchhh--cCCCCCcEEEccCCCCCCCCccccCCC-----CCCcEEeCCCCcCCCCCchhhhcCCC
Q 035751 1 MFRATDLSSNRFCGEIPKVL--GNFKSLKVLNLSHNSLTGNIPVSFDNM-----TALESLDLSFNKLEGRIPKQLLSVTT 73 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~l~~N~l~~~~p~~~~~l~~ 73 (195)
+|++|+|++|.+++.+|..+ ..+++|+.|+|++|.+++. |..+..+ ++|++|++++|.+++..|..+..+++
T Consensus 96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~ 174 (312)
T 1wwl_A 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA 174 (312)
T ss_dssp CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence 36777777777777777665 6777777777777777755 6666655 67777777777777666667777777
Q ss_pred ccEEEcccCcCccC
Q 035751 74 LALLNLSYNRLWGR 87 (195)
Q Consensus 74 L~~L~l~~N~l~g~ 87 (195)
|++|++++|.+.+.
T Consensus 175 L~~L~Ls~N~l~~~ 188 (312)
T 1wwl_A 175 LSTLDLSDNPELGE 188 (312)
T ss_dssp CCEEECCSCTTCHH
T ss_pred CCEEECCCCCcCcc
Confidence 77777777776543
No 82
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.37 E-value=2.3e-13 Score=119.27 Aligned_cols=87 Identities=25% Similarity=0.391 Sum_probs=79.9
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|++|+|++|.|+ .+|..|+.|++|++|+|++|.|+ .+|..|+.|++|++|+|++|.|+ .+|..|..+++|+.|+|+
T Consensus 248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence 4789999999999 88999999999999999999999 88999999999999999999998 788889999999999999
Q ss_pred cCcCccCCCC
Q 035751 81 YNRLWGRIPR 90 (195)
Q Consensus 81 ~N~l~g~~p~ 90 (195)
+|.+++.+|.
T Consensus 325 ~N~l~~~~p~ 334 (727)
T 4b8c_D 325 GNPLEKQFLK 334 (727)
T ss_dssp TSCCCSHHHH
T ss_pred CCccCCCChH
Confidence 9999876553
No 83
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.37 E-value=1.9e-12 Score=106.99 Aligned_cols=87 Identities=21% Similarity=0.196 Sum_probs=68.7
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+++.|+|++|.+++..+..|..+++|++|+|++|.++...+..|..+++|++|++++|.++...+..+..+++|+.|+++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 36778888888887777788888888888888888887777778888888888888888885555567778888888888
Q ss_pred cCcCccC
Q 035751 81 YNRLWGR 87 (195)
Q Consensus 81 ~N~l~g~ 87 (195)
+|.+++.
T Consensus 145 ~N~i~~~ 151 (440)
T 3zyj_A 145 NNPIESI 151 (440)
T ss_dssp SCCCCEE
T ss_pred CCccccc
Confidence 8887743
No 84
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.37 E-value=9.9e-13 Score=110.29 Aligned_cols=104 Identities=25% Similarity=0.196 Sum_probs=62.3
Q ss_pred ccEEEecCCcCCCCcchhhc-CCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 2 FRATDLSSNRFCGEIPKVLG-NFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
|++|+|++|.+++..|..+. .+++|+.|+|++|.+++. | .+..+++|++|++++|.+++. |..+..+++|+.|+++
T Consensus 146 L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls 222 (487)
T 3oja_A 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLR 222 (487)
T ss_dssp EEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECT
T ss_pred CCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEec
Confidence 45556666666555555554 456666666666666533 2 223467777777777777743 4447777788888888
Q ss_pred cCcCccCCCCC-CccCCCCcccccCCcccc
Q 035751 81 YNRLWGRIPRG-NQFNTFENDSYIGNIHLC 109 (195)
Q Consensus 81 ~N~l~g~~p~~-~~~~~~~~~~~~~n~~l~ 109 (195)
+|.+++ +|.. ..+..+..+.+.+|+..|
T Consensus 223 ~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c 251 (487)
T 3oja_A 223 NNKLVL-IEKALRFSQNLEHFDLRGNGFHC 251 (487)
T ss_dssp TSCCCE-ECTTCCCCTTCCEEECTTCCBCH
T ss_pred CCcCcc-cchhhccCCCCCEEEcCCCCCcC
Confidence 888875 4432 333455555566665554
No 85
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.36 E-value=1.1e-12 Score=116.52 Aligned_cols=87 Identities=22% Similarity=0.175 Sum_probs=45.7
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCC-ccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNI-PVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
|++|||++|.|++..|..|..+++|++|+|++|.+.+.+ |..|..+++|++|+|++|.+++..|..+..+++|++|+++
T Consensus 26 l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 105 (844)
T 3j0a_A 26 TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLY 105 (844)
T ss_dssp CCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECT
T ss_pred cCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCc
Confidence 556666666666555555555555555555555333233 4445555555555555555554445555555555555555
Q ss_pred cCcCccCC
Q 035751 81 YNRLWGRI 88 (195)
Q Consensus 81 ~N~l~g~~ 88 (195)
+|.+++.+
T Consensus 106 ~n~l~~~~ 113 (844)
T 3j0a_A 106 FCGLSDAV 113 (844)
T ss_dssp TCCCSSCC
T ss_pred CCCCCccc
Confidence 55554433
No 86
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.36 E-value=3.8e-12 Score=109.07 Aligned_cols=87 Identities=30% Similarity=0.254 Sum_probs=80.1
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|++|+|++|.+++..|..|+.+++|++|+|++|.+++..+..|+.+++|++|++++|.+++..|..+..+++|+.|+++
T Consensus 100 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 179 (597)
T 3oja_B 100 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 179 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECT
T ss_pred CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECc
Confidence 58999999999998888889999999999999999996666668999999999999999998888889999999999999
Q ss_pred cCcCccC
Q 035751 81 YNRLWGR 87 (195)
Q Consensus 81 ~N~l~g~ 87 (195)
+|.+++.
T Consensus 180 ~N~l~~~ 186 (597)
T 3oja_B 180 SNRLTHV 186 (597)
T ss_dssp TSCCSBC
T ss_pred CCCCCCc
Confidence 9999854
No 87
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.35 E-value=1.2e-12 Score=110.15 Aligned_cols=86 Identities=28% Similarity=0.269 Sum_probs=67.1
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|++|+|++|.+++..|..|..+++|++|+|++|.+++..|..|..+++|++|++++|.++ .+|.. .+++|++|+++
T Consensus 22 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~ 98 (520)
T 2z7x_B 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLS 98 (520)
T ss_dssp TCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECC
T ss_pred cccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEecc
Confidence 4678888888888777778888888888888888888777778888888888888888887 55655 67788888888
Q ss_pred cCcCcc-CCC
Q 035751 81 YNRLWG-RIP 89 (195)
Q Consensus 81 ~N~l~g-~~p 89 (195)
+|.+++ .+|
T Consensus 99 ~N~l~~~~~p 108 (520)
T 2z7x_B 99 FNAFDALPIC 108 (520)
T ss_dssp SSCCSSCCCC
T ss_pred CCccccccch
Confidence 888875 344
No 88
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.35 E-value=3.6e-12 Score=110.38 Aligned_cols=87 Identities=28% Similarity=0.295 Sum_probs=42.9
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
|++|+|++|.+++..|..|+.+++|++|+|++|.++...+..|+.+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 51 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 130 (680)
T 1ziw_A 51 LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSH 130 (680)
T ss_dssp CSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCS
T ss_pred CcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCC
Confidence 44445555555444444444555555555555555433333455555555555555555444444455555555555555
Q ss_pred CcCccCC
Q 035751 82 NRLWGRI 88 (195)
Q Consensus 82 N~l~g~~ 88 (195)
|.+++..
T Consensus 131 n~l~~~~ 137 (680)
T 1ziw_A 131 NGLSSTK 137 (680)
T ss_dssp SCCSCCC
T ss_pred CcccccC
Confidence 5554433
No 89
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.35 E-value=5.2e-12 Score=102.61 Aligned_cols=87 Identities=30% Similarity=0.254 Sum_probs=78.5
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|++|+|++|.+++..|..|..+++|++|+|++|.++...+..|..+++|++|++++|.+++..|..+..+++|+.|+++
T Consensus 94 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 173 (390)
T 3o6n_A 94 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 173 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECC
T ss_pred CcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECC
Confidence 58999999999998888889999999999999999995555557999999999999999998778889999999999999
Q ss_pred cCcCccC
Q 035751 81 YNRLWGR 87 (195)
Q Consensus 81 ~N~l~g~ 87 (195)
+|.+++.
T Consensus 174 ~n~l~~~ 180 (390)
T 3o6n_A 174 SNRLTHV 180 (390)
T ss_dssp SSCCSBC
T ss_pred CCcCCcc
Confidence 9999853
No 90
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.34 E-value=2.4e-12 Score=109.38 Aligned_cols=83 Identities=30% Similarity=0.279 Sum_probs=65.9
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|++|+|++|.+++..|..|..+++|++|+|++|.+++..|..|..+++|++|++++|.++ .+|.. .+++|++|+++
T Consensus 53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls 129 (562)
T 3a79_B 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLS 129 (562)
T ss_dssp TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECC
T ss_pred CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECC
Confidence 4678888888888777778888888888888888888777777888888888888888887 55655 67788888888
Q ss_pred cCcCcc
Q 035751 81 YNRLWG 86 (195)
Q Consensus 81 ~N~l~g 86 (195)
+|.+++
T Consensus 130 ~N~l~~ 135 (562)
T 3a79_B 130 FNDFDV 135 (562)
T ss_dssp SSCCSB
T ss_pred CCCccc
Confidence 888774
No 91
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.34 E-value=3.4e-12 Score=108.09 Aligned_cols=86 Identities=20% Similarity=0.150 Sum_probs=62.1
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
++++|++++|.+++..+..|..+++|+.|+|++|.+++..|..|..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence 35677777777776666677777777777777777776666667777777777777777776666667777777777777
Q ss_pred cCcCcc
Q 035751 81 YNRLWG 86 (195)
Q Consensus 81 ~N~l~g 86 (195)
+|.+++
T Consensus 109 ~n~l~~ 114 (570)
T 2z63_A 109 ETNLAS 114 (570)
T ss_dssp TSCCCC
T ss_pred cccccc
Confidence 777663
No 92
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.33 E-value=2.3e-12 Score=101.96 Aligned_cols=83 Identities=24% Similarity=0.247 Sum_probs=38.4
Q ss_pred ccEEEecCCcCCCCcchhhcCC-----CCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCC--Cchhh--hcCC
Q 035751 2 FRATDLSSNRFCGEIPKVLGNF-----KSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGR--IPKQL--LSVT 72 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~--~p~~~--~~l~ 72 (195)
|++|+|++|.+++. |..+..+ ++|++|+|++|.+++..|..|+.+++|++|++++|.+.+. .|..+ ..++
T Consensus 123 L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~ 201 (312)
T 1wwl_A 123 LNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFP 201 (312)
T ss_dssp CSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCT
T ss_pred ccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCC
Confidence 44555555555543 4444443 4555555555555544444455555555555555544332 12222 3344
Q ss_pred CccEEEcccCcCc
Q 035751 73 TLALLNLSYNRLW 85 (195)
Q Consensus 73 ~L~~L~l~~N~l~ 85 (195)
+|+.|++++|.++
T Consensus 202 ~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 202 TLQVLALRNAGME 214 (312)
T ss_dssp TCCEEECTTSCCC
T ss_pred CCCEEECCCCcCc
Confidence 4444444444443
No 93
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.32 E-value=2.1e-12 Score=109.08 Aligned_cols=89 Identities=21% Similarity=0.222 Sum_probs=75.5
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCC-CchhhhcCCCccEEEc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGR-IPKQLLSVTTLALLNL 79 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~L~l 79 (195)
+|++|++++|.+++..|..|..+++|++|+|++|.+++..|..|+.+++|++|++++|.+++. .|..+..+++|++|++
T Consensus 51 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 130 (549)
T 2z81_A 51 NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 130 (549)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEE
T ss_pred cccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEEC
Confidence 478999999999988888899999999999999999977777789999999999999998863 5667888889999999
Q ss_pred ccCcCccCCC
Q 035751 80 SYNRLWGRIP 89 (195)
Q Consensus 80 ~~N~l~g~~p 89 (195)
++|.+.+.+|
T Consensus 131 ~~n~~~~~~~ 140 (549)
T 2z81_A 131 GNVETFSEIR 140 (549)
T ss_dssp EESSSCCEEC
T ss_pred CCCccccccC
Confidence 9888555555
No 94
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.32 E-value=1.1e-12 Score=116.76 Aligned_cols=89 Identities=17% Similarity=0.312 Sum_probs=53.7
Q ss_pred CccEEEecCCcCCC-----------------Ccchhhc--CCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCc-C
Q 035751 1 MFRATDLSSNRFCG-----------------EIPKVLG--NFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNK-L 60 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~-----------------~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~-l 60 (195)
+|++|+|++|.|++ .+|..++ .+++|+.|+|++|.+.+.+|..|+.+++|++|++++|. +
T Consensus 449 ~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~l 528 (876)
T 4ecn_A 449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI 528 (876)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTS
T ss_pred CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCc
Confidence 35666666666665 2666655 66666666666666666666666666666666666665 6
Q ss_pred CC-CCchhhhcCC-------CccEEEcccCcCccCCCC
Q 035751 61 EG-RIPKQLLSVT-------TLALLNLSYNRLWGRIPR 90 (195)
Q Consensus 61 ~~-~~p~~~~~l~-------~L~~L~l~~N~l~g~~p~ 90 (195)
++ .+|..+..++ +|+.|++++|.++ .+|.
T Consensus 529 sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~ 565 (876)
T 4ecn_A 529 SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPA 565 (876)
T ss_dssp CHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCC
T ss_pred ccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCC
Confidence 55 4555444333 5555555555555 4443
No 95
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.31 E-value=9.6e-12 Score=110.80 Aligned_cols=86 Identities=26% Similarity=0.383 Sum_probs=46.8
Q ss_pred ccEEEecCCcCCCCcchhhcCC--------CCCcEEEccCCCCCCCCccccC--CCCCCcEEeCCCCcCCCCCchhhhcC
Q 035751 2 FRATDLSSNRFCGEIPKVLGNF--------KSLKVLNLSHNSLTGNIPVSFD--NMTALESLDLSFNKLEGRIPKQLLSV 71 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l--------~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~l~~N~l~~~~p~~~~~l 71 (195)
|+.|+|++|.++ .+|..+... ++|+.|+|++|.++ .+|..+. .+++|+.|++++|.+++ +|..+..+
T Consensus 699 L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L 775 (876)
T 4ecn_A 699 ISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNS 775 (876)
T ss_dssp CSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGC
T ss_pred CCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcC
Confidence 555666666665 444332221 15666666666665 4555554 55666666666666654 45555556
Q ss_pred CCccEEEccc------CcCccCCCC
Q 035751 72 TTLALLNLSY------NRLWGRIPR 90 (195)
Q Consensus 72 ~~L~~L~l~~------N~l~g~~p~ 90 (195)
++|+.|++++ |.+.+.+|.
T Consensus 776 ~~L~~L~Ls~N~~ls~N~l~~~ip~ 800 (876)
T 4ecn_A 776 SQLKAFGIRHQRDAEGNRILRQWPT 800 (876)
T ss_dssp TTCCEEECCCCBCTTCCBCCCCCCT
T ss_pred CCCCEEECCCCCCcccccccccChH
Confidence 6666666544 445555553
No 96
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.31 E-value=6.2e-12 Score=100.11 Aligned_cols=81 Identities=25% Similarity=0.290 Sum_probs=52.9
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
|+.|++++|.+++..|..|..+++|++|++++|.+++..|..|..+++|++|++++|.++ .+|..+. ++|++|++++
T Consensus 56 l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~ 132 (332)
T 2ft3_A 56 TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHD 132 (332)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCS
T ss_pred CeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCC
Confidence 566777777777655666777777777777777777666667777777777777777666 4444332 4555555555
Q ss_pred CcCc
Q 035751 82 NRLW 85 (195)
Q Consensus 82 N~l~ 85 (195)
|.++
T Consensus 133 n~i~ 136 (332)
T 2ft3_A 133 NRIR 136 (332)
T ss_dssp SCCC
T ss_pred CccC
Confidence 5554
No 97
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.30 E-value=1.5e-12 Score=109.25 Aligned_cols=87 Identities=21% Similarity=0.151 Sum_probs=52.8
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccC-CCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFD-NMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
|+.|+|++|.+++..|..++.+++|+.|+|++|.+++..|..+. .+++|++|++++|.+++. |. ...+++|+.|+++
T Consensus 122 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls 199 (487)
T 3oja_A 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLS 199 (487)
T ss_dssp CEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECC
T ss_pred CCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECC
Confidence 45566666666655565666666666666666666655555554 566666666666666643 22 2246666777777
Q ss_pred cCcCccCCCC
Q 035751 81 YNRLWGRIPR 90 (195)
Q Consensus 81 ~N~l~g~~p~ 90 (195)
+|.+++..|.
T Consensus 200 ~N~l~~~~~~ 209 (487)
T 3oja_A 200 SNKLAFMGPE 209 (487)
T ss_dssp SSCCCEECGG
T ss_pred CCCCCCCCHh
Confidence 7776654443
No 98
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.30 E-value=5.2e-12 Score=100.09 Aligned_cols=82 Identities=21% Similarity=0.173 Sum_probs=41.8
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCcccc-CCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSF-DNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+ ..+++|++|++++|.+++. +. ...+++|+.|+++
T Consensus 122 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls 199 (317)
T 3o53_A 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLS 199 (317)
T ss_dssp CEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECC
T ss_pred CCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECC
Confidence 4556666666655545555555556666666665554444443 2445555555555555422 21 1224445555555
Q ss_pred cCcCc
Q 035751 81 YNRLW 85 (195)
Q Consensus 81 ~N~l~ 85 (195)
+|.++
T Consensus 200 ~N~l~ 204 (317)
T 3o53_A 200 SNKLA 204 (317)
T ss_dssp SSCCC
T ss_pred CCcCC
Confidence 55554
No 99
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.29 E-value=4.8e-12 Score=99.92 Aligned_cols=86 Identities=19% Similarity=0.153 Sum_probs=72.1
Q ss_pred CccEEEecCCcCCCCcchhh--cCCCCCcEEEccCCCCCCCCc----cccCCCCCCcEEeCCCCcCCCCCchhhhcCCCc
Q 035751 1 MFRATDLSSNRFCGEIPKVL--GNFKSLKVLNLSHNSLTGNIP----VSFDNMTALESLDLSFNKLEGRIPKQLLSVTTL 74 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L 74 (195)
+|++|++++|.+.+..|..+ ..+++|++|+|++|.+++..+ ..+..+++|++|++++|.+++..+..+..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 37889999999998888887 888999999999999886555 345578899999999999987777888888999
Q ss_pred cEEEcccCcCcc
Q 035751 75 ALLNLSYNRLWG 86 (195)
Q Consensus 75 ~~L~l~~N~l~g 86 (195)
++|++++|.+.+
T Consensus 172 ~~L~Ls~N~l~~ 183 (310)
T 4glp_A 172 TSLDLSDNPGLG 183 (310)
T ss_dssp CEEECCSCTTCH
T ss_pred CEEECCCCCCcc
Confidence 999999998764
No 100
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.28 E-value=6e-12 Score=101.00 Aligned_cols=85 Identities=22% Similarity=0.203 Sum_probs=67.6
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCch--hhhcCCCccEEE
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPK--QLLSVTTLALLN 78 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~--~~~~l~~L~~L~ 78 (195)
+|++|++++|.+++..|..|..+++|++|++++|.+++..+..|..+++|++|++++|.++. +|. .+..+++|+.|+
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~ 155 (353)
T 2z80_A 77 NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILR 155 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEE
Confidence 47888888888887777788888889999998888885555558888888888888888884 444 677888888888
Q ss_pred cccCc-Ccc
Q 035751 79 LSYNR-LWG 86 (195)
Q Consensus 79 l~~N~-l~g 86 (195)
+++|. +++
T Consensus 156 l~~n~~~~~ 164 (353)
T 2z80_A 156 VGNMDTFTK 164 (353)
T ss_dssp EEESSSCCE
T ss_pred CCCCccccc
Confidence 88884 543
No 101
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.28 E-value=3.3e-11 Score=95.70 Aligned_cols=66 Identities=30% Similarity=0.390 Sum_probs=39.0
Q ss_pred CCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcccCcCccCCCC
Q 035751 24 KSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRLWGRIPR 90 (195)
Q Consensus 24 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~ 90 (195)
++|+.|++++|.+++..|..|..+++|++|++++|.+++..+..+..+++|+.|++++|.++ .+|.
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~ 257 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPG 257 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCT
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCCh
Confidence 44455555555555444555666666666666666666555555666666666666666666 4443
No 102
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.27 E-value=1.6e-11 Score=98.05 Aligned_cols=83 Identities=20% Similarity=0.292 Sum_probs=50.4
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|++|++++|.+++..+ +..+++|++|++++|.++.. +.+..+++|++|++++|.+++. ..+..+++|+.|+++
T Consensus 222 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~ 295 (347)
T 4fmz_A 222 RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLN 295 (347)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred cCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECc
Confidence 35667777777664333 66666677777766666632 3456666666666666666632 345566666666666
Q ss_pred cCcCccCCC
Q 035751 81 YNRLWGRIP 89 (195)
Q Consensus 81 ~N~l~g~~p 89 (195)
+|.+++..|
T Consensus 296 ~n~l~~~~~ 304 (347)
T 4fmz_A 296 NNQLGNEDM 304 (347)
T ss_dssp SSCCCGGGH
T ss_pred CCcCCCcCh
Confidence 666654433
No 103
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.27 E-value=4.3e-12 Score=100.21 Aligned_cols=102 Identities=25% Similarity=0.270 Sum_probs=72.0
Q ss_pred CccEEEecCCcCCCC--cc--hhhcCCCCCcEEEccCCCCCCCCcc----ccCCCCCCcEEeCCCCcCCCCCchhhhcC-
Q 035751 1 MFRATDLSSNRFCGE--IP--KVLGNFKSLKVLNLSHNSLTGNIPV----SFDNMTALESLDLSFNKLEGRIPKQLLSV- 71 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~--~p--~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~l~~N~l~~~~p~~~~~l- 71 (195)
+|++|+|++|.+.+. ++ ..+..+++|++|+|++|.++ .++. .+..+++|++|++++|.+++..|..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 478899999987642 22 22367888888899988887 3343 25677888888999888887777776665
Q ss_pred --CCccEEEcccCcCccCCCCCCccCCCCcccccCC
Q 035751 72 --TTLALLNLSYNRLWGRIPRGNQFNTFENDSYIGN 105 (195)
Q Consensus 72 --~~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~n 105 (195)
++|++|++++|.++ .+|.... ..+..+.+.+|
T Consensus 249 ~~~~L~~L~Ls~N~l~-~lp~~~~-~~L~~L~Ls~N 282 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE-QVPKGLP-AKLRVLDLSSN 282 (310)
T ss_dssp CCTTCCCEECCSSCCC-SCCSCCC-SCCSCEECCSC
T ss_pred CcCcCCEEECCCCCCC-chhhhhc-CCCCEEECCCC
Confidence 68888888888888 6666432 34444444433
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.25 E-value=1.8e-11 Score=95.94 Aligned_cols=82 Identities=28% Similarity=0.317 Sum_probs=54.0
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|++|++++|.+++ +| .+..+++|+.|++++|.+++. +.+..+++|++|++++|.+++. ..+..+++|+.|+++
T Consensus 91 ~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~ 164 (291)
T 1h6t_A 91 NLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLE 164 (291)
T ss_dssp TCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred CCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEcc
Confidence 36777777777764 33 367777777777777777642 3466677777777777777643 456666777777777
Q ss_pred cCcCccCC
Q 035751 81 YNRLWGRI 88 (195)
Q Consensus 81 ~N~l~g~~ 88 (195)
+|.+++..
T Consensus 165 ~N~l~~~~ 172 (291)
T 1h6t_A 165 DNQISDIV 172 (291)
T ss_dssp SSCCCCCG
T ss_pred CCccccch
Confidence 77766443
No 105
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.24 E-value=1.6e-11 Score=93.30 Aligned_cols=84 Identities=18% Similarity=0.197 Sum_probs=66.3
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCc---EEEccCC-CCCCCCccccCCCCCCc-EEeCCCCcCCCCCchhhhcCCCcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLK---VLNLSHN-SLTGNIPVSFDNMTALE-SLDLSFNKLEGRIPKQLLSVTTLA 75 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~---~L~Ls~N-~l~~~~p~~~~~l~~L~-~L~l~~N~l~~~~p~~~~~l~~L~ 75 (195)
+|++|++++|.+++ +|. +..+++|+ .|++++| .+++..+..|..+++|+ +|++++|.++ .+|......++|+
T Consensus 106 ~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~ 182 (239)
T 2xwt_C 106 LLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLD 182 (239)
T ss_dssp TCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEE
T ss_pred CCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCC
Confidence 47889999999885 665 78888888 9999999 88866666788889999 9999999888 5555444447889
Q ss_pred EEEcccCc-CccC
Q 035751 76 LLNLSYNR-LWGR 87 (195)
Q Consensus 76 ~L~l~~N~-l~g~ 87 (195)
.|++++|+ +++.
T Consensus 183 ~L~L~~n~~l~~i 195 (239)
T 2xwt_C 183 AVYLNKNKYLTVI 195 (239)
T ss_dssp EEECTTCTTCCEE
T ss_pred EEEcCCCCCcccC
Confidence 99999995 8743
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.24 E-value=5.1e-11 Score=93.42 Aligned_cols=80 Identities=28% Similarity=0.390 Sum_probs=57.5
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|++|++++|.+++..+ +..+++|+.|++++|.+++ +| .+..+++|++|++++|.+++ + ..+..+++|+.|+++
T Consensus 69 ~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~ 142 (291)
T 1h6t_A 69 NVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLG 142 (291)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECC
T ss_pred CCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEcc
Confidence 46777777777775443 7777777777777777773 33 37777888888888887774 3 456777888888888
Q ss_pred cCcCcc
Q 035751 81 YNRLWG 86 (195)
Q Consensus 81 ~N~l~g 86 (195)
+|.+++
T Consensus 143 ~n~l~~ 148 (291)
T 1h6t_A 143 NNKITD 148 (291)
T ss_dssp SSCCCC
T ss_pred CCcCCc
Confidence 888774
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.23 E-value=5.5e-11 Score=91.95 Aligned_cols=77 Identities=25% Similarity=0.376 Sum_probs=35.6
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
|++|+|++|.+++..+ +..+++|+.|+|++|.+++ +|.. .. ++|++|++++|.+++ ++ .+..+++|+.|++++
T Consensus 65 L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~ 137 (263)
T 1xeu_A 65 LKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRN 137 (263)
T ss_dssp CCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTT
T ss_pred CCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCC
Confidence 4555555555553322 5555555555555555553 2211 11 334444444444432 11 244445555555555
Q ss_pred CcCc
Q 035751 82 NRLW 85 (195)
Q Consensus 82 N~l~ 85 (195)
|.++
T Consensus 138 N~i~ 141 (263)
T 1xeu_A 138 NKLK 141 (263)
T ss_dssp SCCC
T ss_pred CcCC
Confidence 5554
No 108
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.22 E-value=8.4e-12 Score=98.88 Aligned_cols=82 Identities=22% Similarity=0.217 Sum_probs=51.3
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhh-cCCCccEEEcc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLL-SVTTLALLNLS 80 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~-~l~~L~~L~l~ 80 (195)
|++|++++|.+++..+. .+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+. .+++|+.|+++
T Consensus 101 L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 177 (317)
T 3o53_A 101 IETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (317)
T ss_dssp CCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred cCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECC
Confidence 55666666666644332 345667777777777655555666667777777777776655555443 56667777777
Q ss_pred cCcCcc
Q 035751 81 YNRLWG 86 (195)
Q Consensus 81 ~N~l~g 86 (195)
+|.+++
T Consensus 178 ~N~l~~ 183 (317)
T 3o53_A 178 YNFIYD 183 (317)
T ss_dssp TSCCCE
T ss_pred CCcCcc
Confidence 776663
No 109
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.21 E-value=4.3e-11 Score=94.55 Aligned_cols=79 Identities=23% Similarity=0.371 Sum_probs=44.9
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|++|++++|.+++. +. +..+++|+.|++++|.+++..+ +..+++|++|++++|.+++ ++. +..+++|+.|+++
T Consensus 108 ~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~ 181 (308)
T 1h6u_A 108 SIKTLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKAD 181 (308)
T ss_dssp TCCEEECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECC
T ss_pred CCCEEECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECC
Confidence 356666666666642 32 5666666666666666653322 5556666666666666653 222 5555555566655
Q ss_pred cCcCc
Q 035751 81 YNRLW 85 (195)
Q Consensus 81 ~N~l~ 85 (195)
+|.++
T Consensus 182 ~n~l~ 186 (308)
T 1h6u_A 182 DNKIS 186 (308)
T ss_dssp SSCCC
T ss_pred CCccC
Confidence 55555
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.20 E-value=6e-11 Score=91.72 Aligned_cols=96 Identities=24% Similarity=0.263 Sum_probs=74.7
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|+.|++++|.++ .+| .+..+++|+.|+|++|.+++..+ +..+++|++|++++|.+++ +|.. .. ++|+.|+++
T Consensus 42 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~ 114 (263)
T 1xeu_A 42 GVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLD 114 (263)
T ss_dssp TCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECC
T ss_pred cCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEcc
Confidence 4789999999998 455 68899999999999999995544 8999999999999999985 4543 33 899999999
Q ss_pred cCcCccCCCCCCccCCCCcccccC
Q 035751 81 YNRLWGRIPRGNQFNTFENDSYIG 104 (195)
Q Consensus 81 ~N~l~g~~p~~~~~~~~~~~~~~~ 104 (195)
+|.+++ ++....+..+..+.+.+
T Consensus 115 ~N~l~~-~~~l~~l~~L~~L~Ls~ 137 (263)
T 1xeu_A 115 NNELRD-TDSLIHLKNLEILSIRN 137 (263)
T ss_dssp SSCCSB-SGGGTTCTTCCEEECTT
T ss_pred CCccCC-ChhhcCcccccEEECCC
Confidence 999985 44333334444444333
No 111
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.20 E-value=6.2e-11 Score=93.60 Aligned_cols=80 Identities=20% Similarity=0.378 Sum_probs=57.4
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|++|++++|.+++ ++ .+..+++|+.|++++|.+++ ++. +..+++|++|++++|.+++. +. +..+++|+.|+++
T Consensus 86 ~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~ 159 (308)
T 1h6u_A 86 KITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIG 159 (308)
T ss_dssp SCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECC
T ss_pred CCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEcc
Confidence 46777888887774 33 57777788888888887774 333 77778888888888877743 33 6777778888888
Q ss_pred cCcCcc
Q 035751 81 YNRLWG 86 (195)
Q Consensus 81 ~N~l~g 86 (195)
+|.+++
T Consensus 160 ~n~l~~ 165 (308)
T 1h6u_A 160 NAQVSD 165 (308)
T ss_dssp SSCCCC
T ss_pred CCcCCC
Confidence 887774
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.20 E-value=5.6e-11 Score=102.13 Aligned_cols=96 Identities=23% Similarity=0.317 Sum_probs=48.4
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
|+.|+|++|.+.+ + +.+..|++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..| +..+++|+.|+|++
T Consensus 111 L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 111 LKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 184 (605)
T ss_dssp CCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred CCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcC
Confidence 4455555555553 2 2345555555555555555532 345555566666666666554333 55566666666666
Q ss_pred CcCccCCCCCCccCCCCcccccC
Q 035751 82 NRLWGRIPRGNQFNTFENDSYIG 104 (195)
Q Consensus 82 N~l~g~~p~~~~~~~~~~~~~~~ 104 (195)
|.+++ +|....+..+..+.+.+
T Consensus 185 N~i~~-l~~l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 185 NHISD-LRALAGLKNLDVLELFS 206 (605)
T ss_dssp SCCCB-CGGGTTCTTCSEEECCS
T ss_pred CCCCC-ChHHccCCCCCEEEccC
Confidence 66653 23333333344444333
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.15 E-value=1.6e-10 Score=99.26 Aligned_cols=96 Identities=27% Similarity=0.316 Sum_probs=51.4
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
|+.|+|++|.+.+ +| .+..+++|+.|+|++|.+++ + +.+..+++|+.|+|++|.+++. ..+..+++|+.|+|++
T Consensus 89 L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~ 162 (605)
T 1m9s_A 89 LGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLED 162 (605)
T ss_dssp CCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCS
T ss_pred CCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcC
Confidence 4455555555542 22 35555555555555555553 2 2355566666666666666533 4566667777777777
Q ss_pred CcCccCCCCCCccCCCCcccccC
Q 035751 82 NRLWGRIPRGNQFNTFENDSYIG 104 (195)
Q Consensus 82 N~l~g~~p~~~~~~~~~~~~~~~ 104 (195)
|.+++..| ...+..+..+.+.+
T Consensus 163 N~l~~~~~-l~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 163 NQISDIVP-LAGLTKLQNLYLSK 184 (605)
T ss_dssp SCCCCCGG-GTTCTTCCEEECCS
T ss_pred CcCCCchh-hccCCCCCEEECcC
Confidence 77765544 33333444443333
No 114
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.15 E-value=1.4e-10 Score=96.50 Aligned_cols=78 Identities=28% Similarity=0.404 Sum_probs=38.6
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
|+.|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++..| +..+++|+.|++++
T Consensus 267 L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~ 340 (466)
T 1o6v_A 267 LTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYN 340 (466)
T ss_dssp CSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCS
T ss_pred CCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCC
Confidence 5556666665554322 4555555555555555553322 4455555555555555543322 34444444444444
Q ss_pred CcCc
Q 035751 82 NRLW 85 (195)
Q Consensus 82 N~l~ 85 (195)
|.++
T Consensus 341 n~l~ 344 (466)
T 1o6v_A 341 NKVS 344 (466)
T ss_dssp SCCC
T ss_pred CccC
Confidence 4444
No 115
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.12 E-value=2.7e-10 Score=94.65 Aligned_cols=83 Identities=29% Similarity=0.462 Sum_probs=59.6
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|+.|++++|.+++..| +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+.|+++
T Consensus 244 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~ 317 (466)
T 1o6v_A 244 NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLY 317 (466)
T ss_dssp TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECC
T ss_pred CCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECc
Confidence 36677777777775444 6777777777777777774433 6777888888888888875433 6778888888888
Q ss_pred cCcCccCCC
Q 035751 81 YNRLWGRIP 89 (195)
Q Consensus 81 ~N~l~g~~p 89 (195)
+|.+++..|
T Consensus 318 ~n~l~~~~~ 326 (466)
T 1o6v_A 318 FNNISDISP 326 (466)
T ss_dssp SSCCSCCGG
T ss_pred CCcCCCchh
Confidence 888876554
No 116
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.12 E-value=7.7e-11 Score=94.02 Aligned_cols=100 Identities=20% Similarity=0.291 Sum_probs=83.2
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|++|++++|.+++. +.+..+++|+.|++++|.+++. +.+..+++|+.|++++|.+++..|..+..+++|+.|+++
T Consensus 244 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 244 QLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319 (347)
T ss_dssp TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECC
T ss_pred CCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEcc
Confidence 588999999999954 4689999999999999999954 458899999999999999998888899999999999999
Q ss_pred cCcCccCCCCCCccCCCCcccccCC
Q 035751 81 YNRLWGRIPRGNQFNTFENDSYIGN 105 (195)
Q Consensus 81 ~N~l~g~~p~~~~~~~~~~~~~~~n 105 (195)
+|++++..| ...+..+..+.+.+|
T Consensus 320 ~n~l~~~~~-~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 320 QNHITDIRP-LASLSKMDSADFANQ 343 (347)
T ss_dssp SSSCCCCGG-GGGCTTCSEESSSCC
T ss_pred CCccccccC-hhhhhccceeehhhh
Confidence 999997655 334444544444443
No 117
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.11 E-value=9.8e-11 Score=93.99 Aligned_cols=88 Identities=16% Similarity=0.098 Sum_probs=74.2
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCc-cccCCCCCCcE-EeCCCCcCCCCCchhhhcCCCccEEE
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIP-VSFDNMTALES-LDLSFNKLEGRIPKQLLSVTTLALLN 78 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~-L~l~~N~l~~~~p~~~~~l~~L~~L~ 78 (195)
++++|+|++|.|+...+..|.++++|++|+|++|.+.+.+| ..|.++++|.. +.++.|+++...|..|..+++|++|+
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence 57899999999996555679999999999999999876555 46888988765 66778999977788899999999999
Q ss_pred cccCcCccCC
Q 035751 79 LSYNRLWGRI 88 (195)
Q Consensus 79 l~~N~l~g~~ 88 (195)
+++|.+++..
T Consensus 111 l~~n~l~~~~ 120 (350)
T 4ay9_X 111 ISNTGIKHLP 120 (350)
T ss_dssp EEEECCSSCC
T ss_pred ccccccccCC
Confidence 9999998443
No 118
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.07 E-value=7.5e-10 Score=92.10 Aligned_cols=78 Identities=22% Similarity=0.212 Sum_probs=49.1
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|++|++++|.+++. | .+..+++|++|+|++|.+++. | ++.+++|++|++++|.+++. + +..+++|++|+++
T Consensus 43 ~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 43 TLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCD 114 (457)
T ss_dssp TCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECC
T ss_pred CCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECC
Confidence 356677777777643 4 466667777777777776643 3 56666666666666666643 2 5566666666666
Q ss_pred cCcCcc
Q 035751 81 YNRLWG 86 (195)
Q Consensus 81 ~N~l~g 86 (195)
+|.+++
T Consensus 115 ~N~l~~ 120 (457)
T 3bz5_A 115 TNKLTK 120 (457)
T ss_dssp SSCCSC
T ss_pred CCcCCe
Confidence 666654
No 119
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.06 E-value=8.9e-13 Score=97.68 Aligned_cols=79 Identities=33% Similarity=0.407 Sum_probs=43.6
Q ss_pred EEEecCCcCCCCcch------hhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEE
Q 035751 4 ATDLSSNRFCGEIPK------VLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALL 77 (195)
Q Consensus 4 ~L~Ls~N~l~~~~p~------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L 77 (195)
.++++.+.+++..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|+.|
T Consensus 22 ~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L 98 (198)
T 1ds9_A 22 ATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEEL 98 (198)
T ss_dssp CTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEE
T ss_pred CcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEE
Confidence 334444444444443 55556666666666666553 44 5555566666666666655 445555555555666
Q ss_pred EcccCcCc
Q 035751 78 NLSYNRLW 85 (195)
Q Consensus 78 ~l~~N~l~ 85 (195)
++++|.++
T Consensus 99 ~L~~N~l~ 106 (198)
T 1ds9_A 99 WISYNQIA 106 (198)
T ss_dssp EEEEEECC
T ss_pred ECcCCcCC
Confidence 66665555
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.06 E-value=8.3e-10 Score=94.23 Aligned_cols=72 Identities=25% Similarity=0.389 Sum_probs=30.4
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
|++|+|++|.|+ .+| ..+++|+.|+|++|.|++ +|. +.. +|++|++++|.|++ +|. .+++|+.|++++
T Consensus 82 L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~ 149 (571)
T 3cvr_A 82 ITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADN 149 (571)
T ss_dssp CSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred CCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCC
Confidence 344444444444 333 233444444444444443 333 322 44444444444442 332 234444444444
Q ss_pred CcCc
Q 035751 82 NRLW 85 (195)
Q Consensus 82 N~l~ 85 (195)
|.++
T Consensus 150 N~l~ 153 (571)
T 3cvr_A 150 NQLT 153 (571)
T ss_dssp SCCS
T ss_pred CccC
Confidence 4444
No 121
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.05 E-value=2.3e-10 Score=97.69 Aligned_cols=79 Identities=25% Similarity=0.359 Sum_probs=37.1
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCC-------cEEeCCCCcCCCCCchhhhcCCCc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTAL-------ESLDLSFNKLEGRIPKQLLSVTTL 74 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------~~L~l~~N~l~~~~p~~~~~l~~L 74 (195)
|+.|+|++|.|++ +|. |. ++|+.|+|++|.|+ .+|. |.. +| +.|++++|.|+ .+|..+..+++|
T Consensus 162 L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L 232 (571)
T 3cvr_A 162 LEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPT 232 (571)
T ss_dssp CCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTT
T ss_pred cCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCC
Confidence 3444444444443 333 32 44555555555554 3333 332 44 55555555555 345555555555
Q ss_pred cEEEcccCcCccCCC
Q 035751 75 ALLNLSYNRLWGRIP 89 (195)
Q Consensus 75 ~~L~l~~N~l~g~~p 89 (195)
+.|++++|++++.+|
T Consensus 233 ~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 233 CTIILEDNPLSSRIR 247 (571)
T ss_dssp EEEECCSSSCCHHHH
T ss_pred CEEEeeCCcCCCcCH
Confidence 555555555554444
No 122
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.01 E-value=2.8e-09 Score=88.66 Aligned_cols=77 Identities=25% Similarity=0.182 Sum_probs=61.3
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|++|++++|.+++. | ++.+++|++|++++|.+++. | ++.+++|++|++++|.+++ +| +..+++|+.|+++
T Consensus 65 ~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~ 135 (457)
T 3bz5_A 65 GLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCA 135 (457)
T ss_dssp TCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECT
T ss_pred CCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECC
Confidence 478888888888864 4 77888888888888888854 3 7888888888888888885 44 7778888888888
Q ss_pred cCcCcc
Q 035751 81 YNRLWG 86 (195)
Q Consensus 81 ~N~l~g 86 (195)
+|.+++
T Consensus 136 ~N~l~~ 141 (457)
T 3bz5_A 136 RNTLTE 141 (457)
T ss_dssp TSCCSC
T ss_pred CCccce
Confidence 888875
No 123
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.99 E-value=8.4e-10 Score=95.11 Aligned_cols=79 Identities=32% Similarity=0.393 Sum_probs=40.4
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
|+.|+|++|.|++ +| ..+++|+.|+|++|.|+ .+|. .+++|+.|++++|.|+ .+|..+..+++|+.|++++
T Consensus 223 L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 223 LKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 293 (622)
T ss_dssp CCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCS
T ss_pred CCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecC
Confidence 4444455554442 33 23345555555555555 3333 3455555555555555 4455555555555666655
Q ss_pred CcCccCCC
Q 035751 82 NRLWGRIP 89 (195)
Q Consensus 82 N~l~g~~p 89 (195)
|++++.+|
T Consensus 294 N~l~~~~~ 301 (622)
T 3g06_A 294 NPLSERTL 301 (622)
T ss_dssp CCCCHHHH
T ss_pred CCCCCcCH
Confidence 55554443
No 124
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.97 E-value=1.8e-12 Score=95.99 Aligned_cols=81 Identities=23% Similarity=0.347 Sum_probs=73.1
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|++|++++|.+++ +| .+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+++ +| .+..+++|+.|+++
T Consensus 49 ~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~ 123 (198)
T 1ds9_A 49 ACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMS 123 (198)
T ss_dssp TCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEES
T ss_pred CCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECC
Confidence 48899999999996 67 8899999999999999999 778888888999999999999995 55 68889999999999
Q ss_pred cCcCcc
Q 035751 81 YNRLWG 86 (195)
Q Consensus 81 ~N~l~g 86 (195)
+|.+++
T Consensus 124 ~N~i~~ 129 (198)
T 1ds9_A 124 NNKITN 129 (198)
T ss_dssp EEECCC
T ss_pred CCcCCc
Confidence 999984
No 125
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.97 E-value=1.4e-10 Score=93.36 Aligned_cols=87 Identities=28% Similarity=0.305 Sum_probs=59.2
Q ss_pred CccEEEecCCcCCCCcc----hhhcCCC-CCcEEEccCCCCCCCCccccCCC-----CCCcEEeCCCCcCCCCCchhhhc
Q 035751 1 MFRATDLSSNRFCGEIP----KVLGNFK-SLKVLNLSHNSLTGNIPVSFDNM-----TALESLDLSFNKLEGRIPKQLLS 70 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p----~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~l~~N~l~~~~p~~~~~ 70 (195)
+|++|||++|.+++..+ ..+..++ +|++|+|++|.+++..+..+..+ ++|++|++++|.+++..+..+..
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 36777777777776555 5666777 77777777777776666665554 77777777777777655554333
Q ss_pred ----C-CCccEEEcccCcCccC
Q 035751 71 ----V-TTLALLNLSYNRLWGR 87 (195)
Q Consensus 71 ----l-~~L~~L~l~~N~l~g~ 87 (195)
+ ++|+.|++++|.+++.
T Consensus 103 ~l~~~~~~L~~L~Ls~N~l~~~ 124 (362)
T 3goz_A 103 TLAAIPFTITVLDLGWNDFSSK 124 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGGS
T ss_pred HHHhCCCCccEEECcCCcCCcH
Confidence 3 6777777777777643
No 126
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.97 E-value=1.1e-10 Score=94.75 Aligned_cols=86 Identities=22% Similarity=0.305 Sum_probs=58.2
Q ss_pred CccEEEecCCcCCC-----CcchhhcCCCCCcEEEccCCCCC----CCCccccCCCCCCcEEeCCCCcCCCC----Cchh
Q 035751 1 MFRATDLSSNRFCG-----EIPKVLGNFKSLKVLNLSHNSLT----GNIPVSFDNMTALESLDLSFNKLEGR----IPKQ 67 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~-----~~p~~~~~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~l~~N~l~~~----~p~~ 67 (195)
+|++|+|++|.++. ..|..+..+++|+.|+|++|.++ ..+|..+..+++|++|++++|.+++. ++..
T Consensus 188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 267 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 267 (386)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHH
Confidence 46777777777762 23336667777777777777774 45666677777777777777777654 3445
Q ss_pred hhc--CCCccEEEcccCcCcc
Q 035751 68 LLS--VTTLALLNLSYNRLWG 86 (195)
Q Consensus 68 ~~~--l~~L~~L~l~~N~l~g 86 (195)
+.. +++|+.|++++|.+++
T Consensus 268 l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 268 FSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HHTCSSCCCCEEECCSSCCBH
T ss_pred HhhccCCCeEEEECcCCcCCH
Confidence 533 6777777777777765
No 127
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.96 E-value=7.3e-10 Score=92.08 Aligned_cols=60 Identities=38% Similarity=0.536 Sum_probs=44.4
Q ss_pred CCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcccCcCcc--CCCCC
Q 035751 24 KSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRLWG--RIPRG 91 (195)
Q Consensus 24 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g--~~p~~ 91 (195)
++|+.|++++|.+++ +|.. +++|++|++++|.++ .+|. .+++|+.|++++|.+++ .+|..
T Consensus 317 ~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~ 378 (454)
T 1jl5_A 317 PSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPES 378 (454)
T ss_dssp TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTT
T ss_pred CcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHH
Confidence 478888888888874 5543 477888888888887 4665 46788888888888887 55543
No 128
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.96 E-value=3.8e-09 Score=87.79 Aligned_cols=78 Identities=27% Similarity=0.371 Sum_probs=51.3
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|++|++++|.+++ +| .++.+++|++|++++|.+++ +|..+ ++|++|++++|.+++ +| .+..+++|+.|+++
T Consensus 132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECC
Confidence 36677777777774 55 47777777777777777774 44432 466677777776664 44 46666677777777
Q ss_pred cCcCcc
Q 035751 81 YNRLWG 86 (195)
Q Consensus 81 ~N~l~g 86 (195)
+|.+++
T Consensus 204 ~N~l~~ 209 (454)
T 1jl5_A 204 NNSLKK 209 (454)
T ss_dssp SSCCSS
T ss_pred CCcCCc
Confidence 666664
No 129
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.96 E-value=1.8e-10 Score=91.43 Aligned_cols=84 Identities=24% Similarity=0.223 Sum_probs=47.4
Q ss_pred ccEEEecCCcCCCC-cchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCC-cCCCC-CchhhhcCCCccEEE
Q 035751 2 FRATDLSSNRFCGE-IPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFN-KLEGR-IPKQLLSVTTLALLN 78 (195)
Q Consensus 2 L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N-~l~~~-~p~~~~~l~~L~~L~ 78 (195)
|++|++++|.+++. +|..+..+++|+.|+|++|.+++..+..++.+++|++|++++| .+++. ++..+..+++|+.|+
T Consensus 95 L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~ 174 (336)
T 2ast_B 95 VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN 174 (336)
T ss_dssp CCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEE
T ss_pred CCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEc
Confidence 45566666655543 5555556666666666666655555555555666666666665 44432 344455555666666
Q ss_pred cccC-cCc
Q 035751 79 LSYN-RLW 85 (195)
Q Consensus 79 l~~N-~l~ 85 (195)
+++| .++
T Consensus 175 l~~~~~l~ 182 (336)
T 2ast_B 175 LSWCFDFT 182 (336)
T ss_dssp CCCCTTCC
T ss_pred CCCCCCcC
Confidence 6655 554
No 130
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.94 E-value=8.4e-11 Score=95.39 Aligned_cols=86 Identities=22% Similarity=0.257 Sum_probs=52.2
Q ss_pred CccEEEecCCcCC-CCcc---hhhcCCCCCcEEEccCCCCC--C---CCccccCCCCCCcEEeCCCCcCC----CCCchh
Q 035751 1 MFRATDLSSNRFC-GEIP---KVLGNFKSLKVLNLSHNSLT--G---NIPVSFDNMTALESLDLSFNKLE----GRIPKQ 67 (195)
Q Consensus 1 ~L~~L~Ls~N~l~-~~~p---~~~~~l~~L~~L~Ls~N~l~--~---~~p~~~~~l~~L~~L~l~~N~l~----~~~p~~ 67 (195)
+|++|+|++|.++ +.+| ..+..+++|+.|+|++|.++ | ..|..+..+++|++|++++|.++ +.+|..
T Consensus 160 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 239 (386)
T 2ca6_A 160 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 239 (386)
T ss_dssp CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred CCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH
Confidence 3566666666665 3333 34556666666777666665 1 23335566666667777666664 345566
Q ss_pred hhcCCCccEEEcccCcCcc
Q 035751 68 LLSVTTLALLNLSYNRLWG 86 (195)
Q Consensus 68 ~~~l~~L~~L~l~~N~l~g 86 (195)
+..+++|+.|++++|.+++
T Consensus 240 l~~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 240 LKSWPNLRELGLNDCLLSA 258 (386)
T ss_dssp GGGCTTCCEEECTTCCCCH
T ss_pred HccCCCcCEEECCCCCCch
Confidence 6666666667776666653
No 131
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.86 E-value=8.7e-10 Score=88.78 Aligned_cols=86 Identities=24% Similarity=0.210 Sum_probs=75.7
Q ss_pred EEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCc----cccCCCC-CCcEEeCCCCcCCCCCchhhhcC-----CC
Q 035751 4 ATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIP----VSFDNMT-ALESLDLSFNKLEGRIPKQLLSV-----TT 73 (195)
Q Consensus 4 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~-~L~~L~l~~N~l~~~~p~~~~~l-----~~ 73 (195)
.++++.|.+++.+|..+....+|+.|||++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46899999999999888888889999999999997766 7788898 89999999999998778777775 99
Q ss_pred ccEEEcccCcCccCCC
Q 035751 74 LALLNLSYNRLWGRIP 89 (195)
Q Consensus 74 L~~L~l~~N~l~g~~p 89 (195)
|+.|++++|.+++..+
T Consensus 82 L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSS 97 (362)
T ss_dssp CCEEECCSSCGGGSCH
T ss_pred ccEEECcCCcCChHHH
Confidence 9999999999986544
No 132
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.85 E-value=3e-09 Score=82.40 Aligned_cols=68 Identities=29% Similarity=0.322 Sum_probs=54.6
Q ss_pred cCCCCCcEEEccCCCCCC--CCccccCCCCCCcEEeCCCCcCCCCCchhhhcCC--CccEEEcccCcCccCCCC
Q 035751 21 GNFKSLKVLNLSHNSLTG--NIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVT--TLALLNLSYNRLWGRIPR 90 (195)
Q Consensus 21 ~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~--~L~~L~l~~N~l~g~~p~ 90 (195)
.++++|+.|+|++|.|++ .+|..+..+++|+.|+|++|.|++. ..+..+. +|+.|+|++|++++.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCc
Confidence 468899999999999987 3456677899999999999999864 3344444 899999999999887764
No 133
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.84 E-value=1.1e-09 Score=86.92 Aligned_cols=85 Identities=16% Similarity=0.073 Sum_probs=74.0
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCC-CccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGN-IPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNL 79 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l 79 (195)
+++.|++++|.+.+..+. +..+++|+.|++++|.+++. +|..+..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus 71 ~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred cceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 367899999999876665 56799999999999998865 7888899999999999999998888888999999999999
Q ss_pred ccC-cCcc
Q 035751 80 SYN-RLWG 86 (195)
Q Consensus 80 ~~N-~l~g 86 (195)
++| .+++
T Consensus 150 ~~~~~l~~ 157 (336)
T 2ast_B 150 SGCSGFSE 157 (336)
T ss_dssp TTCBSCCH
T ss_pred CCCCCCCH
Confidence 999 6764
No 134
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.79 E-value=2e-08 Score=86.54 Aligned_cols=72 Identities=26% Similarity=0.298 Sum_probs=40.4
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
|++|+|++|.|+ .+|. .+++|++|+|++|.++ .+|. .+++|++|++++|.+++ +|. .+++|+.|++++
T Consensus 63 L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~ 130 (622)
T 3g06_A 63 ITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFG 130 (622)
T ss_dssp CSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCS
T ss_pred CcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCC
Confidence 455566666555 3333 3456666666666665 3443 44566666666666653 333 345566666666
Q ss_pred CcCc
Q 035751 82 NRLW 85 (195)
Q Consensus 82 N~l~ 85 (195)
|.++
T Consensus 131 N~l~ 134 (622)
T 3g06_A 131 NQLT 134 (622)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 6665
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.75 E-value=1.4e-09 Score=89.72 Aligned_cols=86 Identities=21% Similarity=0.176 Sum_probs=53.1
Q ss_pred CccEEEecCCcCCCCcchhhcC-----CCCCcEEEccCCCCCCC----CccccCCCCCCcEEeCCCCcCCCCCchhhhc-
Q 035751 1 MFRATDLSSNRFCGEIPKVLGN-----FKSLKVLNLSHNSLTGN----IPVSFDNMTALESLDLSFNKLEGRIPKQLLS- 70 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~- 70 (195)
+|++|++++|.+.+..+..+.. .++|+.|++++|.+++. ++..+..+++|++|++++|.+++..+..+..
T Consensus 285 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 364 (461)
T 1z7x_W 285 SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 364 (461)
T ss_dssp TCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHH
T ss_pred CcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHH
Confidence 4677777777776443333332 25777777777777644 3455556677777777777776444443332
Q ss_pred ----CCCccEEEcccCcCcc
Q 035751 71 ----VTTLALLNLSYNRLWG 86 (195)
Q Consensus 71 ----l~~L~~L~l~~N~l~g 86 (195)
.++|+.|++++|.+++
T Consensus 365 l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 365 LGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp HTSTTCCCCEEECTTSCCCH
T ss_pred HcCCCCceEEEECCCCCCCh
Confidence 5577777777777763
No 136
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.75 E-value=2.1e-09 Score=83.21 Aligned_cols=75 Identities=28% Similarity=0.347 Sum_probs=43.8
Q ss_pred ccEEEecCCcCCC--CcchhhcCCCCCcEEEccCCCCCCCCccccCCCC--CCcEEeCCCCcCCCCCch-------hhhc
Q 035751 2 FRATDLSSNRFCG--EIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMT--ALESLDLSFNKLEGRIPK-------QLLS 70 (195)
Q Consensus 2 L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~l~~N~l~~~~p~-------~~~~ 70 (195)
|+.|+|++|.|++ .+|..+..+++|+.|+|++|.|++. ..+..+. +|++|+|++|.+.+.+|. .+..
T Consensus 172 L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~ 249 (267)
T 3rw6_A 172 LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRER 249 (267)
T ss_dssp CCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHH
T ss_pred CCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHH
Confidence 5666777777665 3345555666777777777766643 2223333 666777777766654442 2455
Q ss_pred CCCccEEE
Q 035751 71 VTTLALLN 78 (195)
Q Consensus 71 l~~L~~L~ 78 (195)
+++|+.||
T Consensus 250 ~P~L~~LD 257 (267)
T 3rw6_A 250 FPKLLRLD 257 (267)
T ss_dssp CTTCCEES
T ss_pred CcccCeEC
Confidence 66666654
No 137
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.68 E-value=3.1e-08 Score=79.34 Aligned_cols=82 Identities=22% Similarity=0.182 Sum_probs=41.9
Q ss_pred cEEEecC-CcCCCCcchhhcCCC-CCcEEEccCCCCCCCCccccCCCCCCcEEeCCC-CcCCCCCchhhhcCCCccEEEc
Q 035751 3 RATDLSS-NRFCGEIPKVLGNFK-SLKVLNLSHNSLTGNIPVSFDNMTALESLDLSF-NKLEGRIPKQLLSVTTLALLNL 79 (195)
Q Consensus 3 ~~L~Ls~-N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~-N~l~~~~p~~~~~l~~L~~L~l 79 (195)
..|++.+ |.+....+..|..+. .++.|+|++|.|+ .+|.......+|+.|++++ |.++...++.|..+++|+.|++
T Consensus 131 ~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdL 209 (350)
T 4ay9_X 131 VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 209 (350)
T ss_dssp EEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEEC
T ss_pred hhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhc
Confidence 3455543 344433334444443 4556666666666 3333333445566666653 4444222234555666666666
Q ss_pred ccCcCc
Q 035751 80 SYNRLW 85 (195)
Q Consensus 80 ~~N~l~ 85 (195)
++|.++
T Consensus 210 s~N~l~ 215 (350)
T 4ay9_X 210 SRTRIH 215 (350)
T ss_dssp TTSCCC
T ss_pred CCCCcC
Confidence 666665
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.66 E-value=5e-08 Score=77.40 Aligned_cols=87 Identities=16% Similarity=0.121 Sum_probs=74.5
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCc-EEeCCCCcCCCCCchhhhcCCCccEEEc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALE-SLDLSFNKLEGRIPKQLLSVTTLALLNL 79 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~l~~N~l~~~~p~~~~~l~~L~~L~l 79 (195)
+|+.|+|++|.++.+.+..|.++.+|+.++|++| ++...+..|.++.+|+ .+++.+ .++...+.+|..+++|+.+++
T Consensus 227 ~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLA 304 (329)
T ss_dssp TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEE
T ss_pred CCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEe
Confidence 4789999999999666678999999999999998 7767778899999999 999998 777566788999999999999
Q ss_pred ccCcCccCCCC
Q 035751 80 SYNRLWGRIPR 90 (195)
Q Consensus 80 ~~N~l~g~~p~ 90 (195)
+.|.++ .++.
T Consensus 305 ~~n~i~-~I~~ 314 (329)
T 3sb4_A 305 TGDKIT-TLGD 314 (329)
T ss_dssp CSSCCC-EECT
T ss_pred CCCccC-ccch
Confidence 999887 4443
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.63 E-value=6.6e-09 Score=84.23 Aligned_cols=86 Identities=27% Similarity=0.240 Sum_probs=62.9
Q ss_pred CccEEEecCCcCCCCcchhh-----cCCCCCcEEEccCCCCCCC----CccccCCCCCCcEEeCCCCcCCCC----Cchh
Q 035751 1 MFRATDLSSNRFCGEIPKVL-----GNFKSLKVLNLSHNSLTGN----IPVSFDNMTALESLDLSFNKLEGR----IPKQ 67 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~----~p~~ 67 (195)
+|+.|+|++|.|+......+ ...++|++|+|++|.|+.. ++..+..+++|++|+|++|.|+.. ++..
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~ 206 (372)
T 3un9_A 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ 206 (372)
T ss_dssp TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence 47889999998875444444 3467899999999988632 344456788899999999988643 2445
Q ss_pred hhcCCCccEEEcccCcCcc
Q 035751 68 LLSVTTLALLNLSYNRLWG 86 (195)
Q Consensus 68 ~~~l~~L~~L~l~~N~l~g 86 (195)
+...++|+.|++++|.++.
T Consensus 207 L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp GGGCSCCCEEECCSSCCCH
T ss_pred HhcCCCcCeEECCCCCCCH
Confidence 6677889999999998863
No 140
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.59 E-value=5.3e-09 Score=86.27 Aligned_cols=84 Identities=20% Similarity=0.169 Sum_probs=39.7
Q ss_pred ccEEEecCCcCCCCc-----chhhcCCCCCcEEEccCCCCCCC----CccccCCCCCCcEEeCCCCcCCCCCchhhhc--
Q 035751 2 FRATDLSSNRFCGEI-----PKVLGNFKSLKVLNLSHNSLTGN----IPVSFDNMTALESLDLSFNKLEGRIPKQLLS-- 70 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~-----p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~-- 70 (195)
|++|++++|.+++.. +..+..+++|+.|++++|.++.. ++..+..+++|++|++++|.++...+..+..
T Consensus 229 L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 308 (461)
T 1z7x_W 229 LRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL 308 (461)
T ss_dssp CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHH
T ss_pred ccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHh
Confidence 555666666554321 11122355566666666655532 3444444555555555555554322222221
Q ss_pred ---CCCccEEEcccCcCc
Q 035751 71 ---VTTLALLNLSYNRLW 85 (195)
Q Consensus 71 ---l~~L~~L~l~~N~l~ 85 (195)
.++|+.|++++|.++
T Consensus 309 ~~~~~~L~~L~L~~n~l~ 326 (461)
T 1z7x_W 309 LEPGCQLESLWVKSCSFT 326 (461)
T ss_dssp TSTTCCCCEEECTTSCCB
T ss_pred ccCCccceeeEcCCCCCc
Confidence 134555555555544
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.50 E-value=2.8e-08 Score=80.54 Aligned_cols=85 Identities=22% Similarity=0.194 Sum_probs=55.7
Q ss_pred CccEEEecCCcCCCCcchhh-cCCCCCcEEEccCCCCCCCCcccc-----CCCCCCcEEeCCCCcCCCC----Cchhhhc
Q 035751 1 MFRATDLSSNRFCGEIPKVL-GNFKSLKVLNLSHNSLTGNIPVSF-----DNMTALESLDLSFNKLEGR----IPKQLLS 70 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~l~~N~l~~~----~p~~~~~ 70 (195)
+|++|+|++|.++......+ ..+.+|+.|+|++|.++......+ ...++|++|+|++|.|+.. ++..+..
T Consensus 102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~ 181 (372)
T 3un9_A 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG 181 (372)
T ss_dssp CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT
T ss_pred CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc
Confidence 46778888888764333332 245678888888888764333333 3457788888888887532 3344466
Q ss_pred CCCccEEEcccCcCc
Q 035751 71 VTTLALLNLSYNRLW 85 (195)
Q Consensus 71 l~~L~~L~l~~N~l~ 85 (195)
.++|++|+|++|.++
T Consensus 182 ~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 182 NTSVTHLSLLHTGLG 196 (372)
T ss_dssp CSSCCEEECTTSSCH
T ss_pred CCCcCEEeCCCCCCC
Confidence 777888888888876
No 142
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.38 E-value=8.5e-08 Score=70.11 Aligned_cols=85 Identities=16% Similarity=0.152 Sum_probs=65.9
Q ss_pred CccEEEecCC-cCCCC----cchhhcCCCCCcEEEccCCCCCCC----CccccCCCCCCcEEeCCCCcCCCC----Cchh
Q 035751 1 MFRATDLSSN-RFCGE----IPKVLGNFKSLKVLNLSHNSLTGN----IPVSFDNMTALESLDLSFNKLEGR----IPKQ 67 (195)
Q Consensus 1 ~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~----~p~~ 67 (195)
+|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.|+.. +...
T Consensus 37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~ 116 (185)
T 1io0_A 37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA 116 (185)
T ss_dssp TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence 4789999999 88742 445567788999999999998732 334455668899999999999753 3455
Q ss_pred hhcCCCccEEEc--ccCcCc
Q 035751 68 LLSVTTLALLNL--SYNRLW 85 (195)
Q Consensus 68 ~~~l~~L~~L~l--~~N~l~ 85 (195)
+...+.|+.|++ ++|.++
T Consensus 117 L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 117 LQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp GGGCSSCCEEECCCCSSCCC
T ss_pred HHhCCCceEEEecCCCCCCC
Confidence 677788999999 889886
No 143
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.36 E-value=1.5e-07 Score=68.81 Aligned_cols=71 Identities=17% Similarity=0.198 Sum_probs=54.2
Q ss_pred cchhhcCCCCCcEEEccCC-CCCCC----CccccCCCCCCcEEeCCCCcCCCC----CchhhhcCCCccEEEcccCcCcc
Q 035751 16 IPKVLGNFKSLKVLNLSHN-SLTGN----IPVSFDNMTALESLDLSFNKLEGR----IPKQLLSVTTLALLNLSYNRLWG 86 (195)
Q Consensus 16 ~p~~~~~l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~g 86 (195)
+...+...+.|++|+|++| .+... +...+...++|++|+|++|.|... +...+...+.|++|+|++|.++.
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3445677899999999999 88632 344567778999999999998743 33445667889999999999873
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.32 E-value=1.1e-07 Score=80.73 Aligned_cols=63 Identities=13% Similarity=0.057 Sum_probs=35.3
Q ss_pred CCCCcEEEccCCCCCC-CCccccCCCCCCcEEeCCCCcCCCC-CchhhhcCCCccEEEcccCcCc
Q 035751 23 FKSLKVLNLSHNSLTG-NIPVSFDNMTALESLDLSFNKLEGR-IPKQLLSVTTLALLNLSYNRLW 85 (195)
Q Consensus 23 l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~ 85 (195)
+++|+.|++++|.+++ .++..+..+++|++|++++|.+++. ++..+..+++|+.|++++|+++
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 5556666666666553 2233345566666666666665433 2233345666666666666655
No 145
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.26 E-value=3e-07 Score=66.65 Aligned_cols=83 Identities=10% Similarity=0.057 Sum_probs=56.3
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCC-CCCCCccccCCC----CCCcEEeCCCCc-CCCCCchhhhcCCCc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNS-LTGNIPVSFDNM----TALESLDLSFNK-LEGRIPKQLLSVTTL 74 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~l~~N~-l~~~~p~~~~~l~~L 74 (195)
.|++||++++.++..--..+..+++|+.|+|+++. ++..--..+..+ ++|++|+++++. ++..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 36788888888775555567788888888888874 653333334444 368888888764 664434456677888
Q ss_pred cEEEcccCc
Q 035751 75 ALLNLSYNR 83 (195)
Q Consensus 75 ~~L~l~~N~ 83 (195)
+.|++++++
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 888887754
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.16 E-value=2.6e-06 Score=67.44 Aligned_cols=77 Identities=17% Similarity=0.043 Sum_probs=68.1
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCc-EEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLK-VLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNL 79 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l 79 (195)
+|+.|+|++| +..+.+.+|.++.+|+ .+++.. .++...+..|.++++|+.+++++|.++...+..|.++++|+.++.
T Consensus 251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 5889999998 8767778899999999 999999 777577789999999999999999999777779999999998863
No 147
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.10 E-value=1.2e-06 Score=74.45 Aligned_cols=84 Identities=12% Similarity=0.201 Sum_probs=41.5
Q ss_pred ccEEEecCCc-CCC-CcchhhcCCCCCcEEEccCCCCCCC----CccccCCCCCCcEEeCCCCcCCCC----CchhhhcC
Q 035751 2 FRATDLSSNR-FCG-EIPKVLGNFKSLKVLNLSHNSLTGN----IPVSFDNMTALESLDLSFNKLEGR----IPKQLLSV 71 (195)
Q Consensus 2 L~~L~Ls~N~-l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~----~p~~~~~l 71 (195)
|++|+|++|. ++. .++.....+++|++|+|++|.+++. ++..+..+++|++|++++|.+++. ++..+..+
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 5566666554 110 1112223556666666666655433 222334455666666666665422 22333455
Q ss_pred CCccEEEcccCcCc
Q 035751 72 TTLALLNLSYNRLW 85 (195)
Q Consensus 72 ~~L~~L~l~~N~l~ 85 (195)
++|+.|++++|.+.
T Consensus 220 ~~L~~L~L~~~~~~ 233 (592)
T 3ogk_B 220 RSLVSVKVGDFEIL 233 (592)
T ss_dssp TTCCEEECSSCBGG
T ss_pred CCCcEEeccCccHH
Confidence 66666666665554
No 148
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.07 E-value=3.7e-07 Score=77.46 Aligned_cols=84 Identities=17% Similarity=0.139 Sum_probs=47.3
Q ss_pred CccEEEec--C----CcCCCC-----cchhhcCCCCCcEEEccCCCCCCCCccccCC-CCCCcEEeCCCCcCCCCCchhh
Q 035751 1 MFRATDLS--S----NRFCGE-----IPKVLGNFKSLKVLNLSHNSLTGNIPVSFDN-MTALESLDLSFNKLEGRIPKQL 68 (195)
Q Consensus 1 ~L~~L~Ls--~----N~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~l~~N~l~~~~p~~~ 68 (195)
+|+.|+++ + |.++.. ++..+..+++|+.|++++ .++...+..+.. +++|++|++++|.+++..+..+
T Consensus 398 ~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l 476 (594)
T 2p1m_B 398 NMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHV 476 (594)
T ss_dssp TCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHH
T ss_pred CcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHH
Confidence 46677777 3 445421 122245566777777755 444333333433 6667777777776654433333
Q ss_pred -hcCCCccEEEcccCcCc
Q 035751 69 -LSVTTLALLNLSYNRLW 85 (195)
Q Consensus 69 -~~l~~L~~L~l~~N~l~ 85 (195)
..+++|+.|++++|.++
T Consensus 477 ~~~~~~L~~L~L~~n~~~ 494 (594)
T 2p1m_B 477 LSGCDSLRKLEIRDCPFG 494 (594)
T ss_dssp HHHCTTCCEEEEESCSCC
T ss_pred HhcCCCcCEEECcCCCCc
Confidence 45666777777777664
No 149
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.90 E-value=2.6e-06 Score=72.29 Aligned_cols=82 Identities=22% Similarity=0.268 Sum_probs=39.0
Q ss_pred ccEEEecCCcCCCCcchhhc-CCCCCcEEEccCC-CCCCC-CccccCCCCCCcEEeCCCCcCCCCCchhhh----cCCCc
Q 035751 2 FRATDLSSNRFCGEIPKVLG-NFKSLKVLNLSHN-SLTGN-IPVSFDNMTALESLDLSFNKLEGRIPKQLL----SVTTL 74 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~----~l~~L 74 (195)
|++|+|++|.+++..+..+. .+++|+.|+|++| .++.. ++..+..+++|++|++++|.+++..+..+. .+++|
T Consensus 107 L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L 186 (594)
T 2p1m_B 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSL 186 (594)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCC
T ss_pred CCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcC
Confidence 55566666665554444443 4555555555555 23211 222233455555555555554433332222 33455
Q ss_pred cEEEcccCc
Q 035751 75 ALLNLSYNR 83 (195)
Q Consensus 75 ~~L~l~~N~ 83 (195)
+.|++++|.
T Consensus 187 ~~L~l~~~~ 195 (594)
T 2p1m_B 187 VSLNISCLA 195 (594)
T ss_dssp CEEECTTCC
T ss_pred cEEEecccC
Confidence 555555543
No 150
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.81 E-value=6.8e-05 Score=51.47 Aligned_cols=56 Identities=23% Similarity=0.294 Sum_probs=34.3
Q ss_pred EEEccCCCCC-CCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcccCcCc
Q 035751 28 VLNLSHNSLT-GNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYNRLW 85 (195)
Q Consensus 28 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 85 (195)
.++.+++.++ ..+|..+. ++|++|+|++|+|+...+..|..+++|+.|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666665 23443322 35677777777776544555666777777777777665
No 151
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.80 E-value=4.5e-05 Score=52.41 Aligned_cols=57 Identities=23% Similarity=0.272 Sum_probs=47.2
Q ss_pred cEEEecCCcCC-CCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCC
Q 035751 3 RATDLSSNRFC-GEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLE 61 (195)
Q Consensus 3 ~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 61 (195)
..++.+++.++ ..+|..+. .+|+.|+|++|.|+...+..|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36788899887 35665433 57999999999999777778899999999999999886
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.60 E-value=0.00014 Score=59.28 Aligned_cols=82 Identities=10% Similarity=0.063 Sum_probs=66.1
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCC-----CCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLT-----GNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLA 75 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~ 75 (195)
+|+.++|. +.++.+-+.+|.++.+|+.+++.+|.+. ...+..|..+++|+.+++. +.++......|..+.+|+
T Consensus 249 ~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~ 326 (401)
T 4fdw_A 249 GITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVT 326 (401)
T ss_dssp CCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCC
T ss_pred CccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCcc
Confidence 47788884 5566566788999999999999998765 3556789999999999999 457756677888999999
Q ss_pred EEEcccCcCc
Q 035751 76 LLNLSYNRLW 85 (195)
Q Consensus 76 ~L~l~~N~l~ 85 (195)
.+++..| ++
T Consensus 327 ~l~lp~~-l~ 335 (401)
T 4fdw_A 327 QLTIPAN-VT 335 (401)
T ss_dssp EEEECTT-CC
T ss_pred EEEECcc-cc
Confidence 9999665 54
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.57 E-value=0.0002 Score=58.43 Aligned_cols=85 Identities=12% Similarity=0.131 Sum_probs=64.2
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCC-----CCCchhhhcCCCcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLE-----GRIPKQLLSVTTLA 75 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~-----~~~p~~~~~l~~L~ 75 (195)
+|+.+++..| ++.+-..+|.+ .+|+.+++. +.++......|..+++|+.+++.+|.+. ...+..|..+++|+
T Consensus 227 ~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~ 303 (401)
T 4fdw_A 227 QLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLA 303 (401)
T ss_dssp TCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCC
T ss_pred CCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCC
Confidence 4778888875 56455567777 889999994 4566566788999999999999988765 34567888999999
Q ss_pred EEEcccCcCccCCCC
Q 035751 76 LLNLSYNRLWGRIPR 90 (195)
Q Consensus 76 ~L~l~~N~l~g~~p~ 90 (195)
.+++.. .++ .++.
T Consensus 304 ~l~l~~-~i~-~I~~ 316 (401)
T 4fdw_A 304 RFEIPE-SIR-ILGQ 316 (401)
T ss_dssp EECCCT-TCC-EECT
T ss_pred eEEeCC-ceE-EEhh
Confidence 999984 455 4443
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.43 E-value=6.3e-05 Score=60.61 Aligned_cols=9 Identities=0% Similarity=0.187 Sum_probs=4.9
Q ss_pred ccEEEecCC
Q 035751 2 FRATDLSSN 10 (195)
Q Consensus 2 L~~L~Ls~N 10 (195)
|+.|+|++|
T Consensus 174 L~~L~L~g~ 182 (362)
T 2ra8_A 174 LNNLKIKGT 182 (362)
T ss_dssp CCEEEEECC
T ss_pred CcEEEEeCC
Confidence 455555554
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.34 E-value=2.1e-05 Score=63.44 Aligned_cols=85 Identities=20% Similarity=0.299 Sum_probs=59.1
Q ss_pred CccEEEecC--CcCCCC-----cchhh--cCCCCCcEEEccCCCCCCCCcccc---CCCCCCcEEeCCCCcCCCC----C
Q 035751 1 MFRATDLSS--NRFCGE-----IPKVL--GNFKSLKVLNLSHNSLTGNIPVSF---DNMTALESLDLSFNKLEGR----I 64 (195)
Q Consensus 1 ~L~~L~Ls~--N~l~~~-----~p~~~--~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~l~~N~l~~~----~ 64 (195)
+|+.|+|+. |...+. +...+ ..+++|+.|+|.+|.+....+..+ ..+++|++|+|+.|.++.. +
T Consensus 220 ~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L 299 (362)
T 2ra8_A 220 NLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLL 299 (362)
T ss_dssp TCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHH
T ss_pred CCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHH
Confidence 588899863 221111 11122 257899999999999874333232 3578999999999999764 2
Q ss_pred chhhhcCCCccEEEcccCcCc
Q 035751 65 PKQLLSVTTLALLNLSYNRLW 85 (195)
Q Consensus 65 p~~~~~l~~L~~L~l~~N~l~ 85 (195)
+..+..+++|+.|++++|.++
T Consensus 300 ~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 300 LDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HTTHHHHTTCSEEECCSBBCC
T ss_pred HhhcccCCcceEEECCCCcCC
Confidence 334456799999999999887
No 156
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.27 E-value=0.00015 Score=53.36 Aligned_cols=41 Identities=20% Similarity=0.234 Sum_probs=17.1
Q ss_pred CCCCCCcEEeCCCCcCCCC----CchhhhcCCCccEEEcccCcCc
Q 035751 45 DNMTALESLDLSFNKLEGR----IPKQLLSVTTLALLNLSYNRLW 85 (195)
Q Consensus 45 ~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~ 85 (195)
..-+.|+.|+|++|.|... +-..+..-..|+.|+|+.|.|+
T Consensus 67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3334444445544444321 1122333344445555554443
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.94 E-value=0.0015 Score=52.81 Aligned_cols=61 Identities=21% Similarity=0.241 Sum_probs=28.8
Q ss_pred hcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcccC
Q 035751 20 LGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYN 82 (195)
Q Consensus 20 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N 82 (195)
|..+.+|+.+.+..+ ++......|..+.+|+.+++..+ ++..-..+|.++.+|+.+++..|
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 444555555555443 33233344555555555555432 33233344555555555555443
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.76 E-value=0.00059 Score=49.26 Aligned_cols=62 Identities=6% Similarity=0.098 Sum_probs=48.4
Q ss_pred CCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCc-CCCCCchhhhcC----CCccEEEcccCc-Cc
Q 035751 24 KSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNK-LEGRIPKQLLSV----TTLALLNLSYNR-LW 85 (195)
Q Consensus 24 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~-l~~~~p~~~~~l----~~L~~L~l~~N~-l~ 85 (195)
..|+.||++++.++..--..+..+++|++|+|+++. ++..--..+..+ ++|+.|+++++. +|
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 579999999999886655667899999999999985 664433445553 479999999975 65
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.74 E-value=0.00074 Score=49.62 Aligned_cols=82 Identities=11% Similarity=0.210 Sum_probs=60.8
Q ss_pred CccEEEecCC-cCCC----CcchhhcCCCCCcEEEccCCCCCCC----CccccCCCCCCcEEeCCCCcCCCC----Cchh
Q 035751 1 MFRATDLSSN-RFCG----EIPKVLGNFKSLKVLNLSHNSLTGN----IPVSFDNMTALESLDLSFNKLEGR----IPKQ 67 (195)
Q Consensus 1 ~L~~L~Ls~N-~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~----~p~~ 67 (195)
+|++|+|++| .|.. .+-+.+..-+.|+.|+|++|.|... +...+..-+.|++|+|++|.|... +-..
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a 121 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS 121 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence 4789999986 7763 2445567778999999999999732 333445568899999999999753 2234
Q ss_pred hhcCCCccEEEcccC
Q 035751 68 LLSVTTLALLNLSYN 82 (195)
Q Consensus 68 ~~~l~~L~~L~l~~N 82 (195)
+..-..|+.|+|++|
T Consensus 122 L~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 122 TLVTQSIVEFKADNQ 136 (197)
T ss_dssp TTTTCCCSEEECCCC
T ss_pred HhhCCceeEEECCCC
Confidence 555677999999865
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.72 E-value=0.0048 Score=49.72 Aligned_cols=78 Identities=12% Similarity=0.159 Sum_probs=49.0
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
|+.+.+..+... .-...|.++..|+.+.+.. .++......|.++.+|+.+++..+ ++.....+|..+.+|+.+.+..
T Consensus 267 L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~ 343 (394)
T 4gt6_A 267 LASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS 343 (394)
T ss_dssp CCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT
T ss_pred ccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc
Confidence 555666554333 4445677777777777753 344344556777777777777654 5434455677777777777754
Q ss_pred C
Q 035751 82 N 82 (195)
Q Consensus 82 N 82 (195)
+
T Consensus 344 s 344 (394)
T 4gt6_A 344 S 344 (394)
T ss_dssp T
T ss_pred c
Confidence 4
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.44 E-value=0.0043 Score=49.59 Aligned_cols=79 Identities=15% Similarity=0.173 Sum_probs=61.1
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
|+.+.+..+ ++.+-...|.++.+|+.+.+..+ +.......|..+.+|+.+.+.++.++.....+|.++.+|+.+++..
T Consensus 242 L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 242 LDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred ceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence 567777665 55455677888899999998765 4435556788899999999998888856667888999999999875
Q ss_pred C
Q 035751 82 N 82 (195)
Q Consensus 82 N 82 (195)
+
T Consensus 320 ~ 320 (379)
T 4h09_A 320 A 320 (379)
T ss_dssp T
T ss_pred c
Confidence 4
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.01 E-value=0.016 Score=46.24 Aligned_cols=81 Identities=14% Similarity=0.114 Sum_probs=55.6
Q ss_pred ccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 2 FRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 2 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
|+.+.+..+ +.......|.++..|+.+.+..+ ++......|..+.+|+.+.+..+ ++......|..+.+|+.+.+.+
T Consensus 219 l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~ 295 (379)
T 4h09_A 219 LKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDN 295 (379)
T ss_dssp CSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECC
T ss_pred cceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccc
Confidence 444555433 34344566778888888888776 55355567888888888888654 5434455778888899888887
Q ss_pred CcCc
Q 035751 82 NRLW 85 (195)
Q Consensus 82 N~l~ 85 (195)
+.++
T Consensus 296 ~~i~ 299 (379)
T 4h09_A 296 SAIE 299 (379)
T ss_dssp TTCC
T ss_pred cccc
Confidence 7776
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.90 E-value=0.024 Score=45.61 Aligned_cols=64 Identities=11% Similarity=0.194 Sum_probs=38.0
Q ss_pred chhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcccC
Q 035751 17 PKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSYN 82 (195)
Q Consensus 17 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N 82 (195)
..+|.++..|+.+.+..+... .....|.+++.|+.+.+. +.++......|..+.+|+.+++..+
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~ 321 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG 321 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT
T ss_pred cceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc
Confidence 345666667777776655443 444556666777777765 3344344456666677777766543
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.46 E-value=0.0096 Score=47.97 Aligned_cols=79 Identities=14% Similarity=0.096 Sum_probs=63.9
Q ss_pred CccEEEecCCcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEcc
Q 035751 1 MFRATDLSSNRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLS 80 (195)
Q Consensus 1 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~ 80 (195)
+|+.+.+..+ +..+-..+|.++.+|+.+++..+ ++.....+|.++.+|+.+++..| ++.....+|.++.+|+.+++.
T Consensus 298 ~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 298 SLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred cccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 4677888765 66455678999999999999865 66455678999999999999877 765667789999999999997
Q ss_pred cC
Q 035751 81 YN 82 (195)
Q Consensus 81 ~N 82 (195)
.+
T Consensus 375 ~~ 376 (394)
T 4fs7_A 375 KR 376 (394)
T ss_dssp GG
T ss_pred CC
Confidence 65
No 165
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=88.70 E-value=0.2 Score=27.09 Aligned_cols=16 Identities=19% Similarity=0.227 Sum_probs=7.0
Q ss_pred hhhhhhhHHHHHHHHH
Q 035751 147 AKMGYAFGLVIGLSIG 162 (195)
Q Consensus 147 ~~~~~~~~~~~~~~~~ 162 (195)
++.|++.|+++.++++
T Consensus 13 IA~gVVgGv~~~~ii~ 28 (44)
T 2ks1_B 13 IATGMVGALLLLLVVA 28 (44)
T ss_dssp STHHHHHHHHHHHHHH
T ss_pred EEeehhHHHHHHHHHH
Confidence 4445544444433333
No 166
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=86.68 E-value=0.36 Score=26.08 Aligned_cols=13 Identities=31% Similarity=0.250 Sum_probs=5.7
Q ss_pred hhhhhhhHHHHHH
Q 035751 147 AKMGYAFGLVIGL 159 (195)
Q Consensus 147 ~~~~~~~~~~~~~ 159 (195)
++.|++.|+++.+
T Consensus 12 IA~gVVgGv~~v~ 24 (44)
T 2l2t_A 12 IAAGVIGGLFILV 24 (44)
T ss_dssp HHHHHHHHHHHHH
T ss_pred EEEeehHHHHHHH
Confidence 4444444444433
No 167
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=84.89 E-value=0.85 Score=24.00 Aligned_cols=13 Identities=38% Similarity=0.429 Sum_probs=5.7
Q ss_pred hhhhhhhHHHHHH
Q 035751 147 AKMGYAFGLVIGL 159 (195)
Q Consensus 147 ~~~~~~~~~~~~~ 159 (195)
++.+++.|+++.+
T Consensus 15 I~~~vv~Gv~ll~ 27 (41)
T 2k9y_A 15 VIGGVAVGVVLLL 27 (41)
T ss_dssp HHHHHHHHHHHHH
T ss_pred EEeehhHHHHHHH
Confidence 3444444444433
No 168
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=83.85 E-value=1.5 Score=22.85 Aligned_cols=11 Identities=36% Similarity=0.842 Sum_probs=5.4
Q ss_pred hhhhhHHHHHH
Q 035751 149 MGYAFGLVIGL 159 (195)
Q Consensus 149 ~~~~~~~~~~~ 159 (195)
.|++++.++++
T Consensus 14 AGiVvG~v~gv 24 (38)
T 2k1k_A 14 VAVIFGLLLGA 24 (38)
T ss_dssp HHHHHHHHHHH
T ss_pred eeeehHHHHHH
Confidence 45555554443
No 169
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=83.10 E-value=2.8 Score=25.66 Aligned_cols=8 Identities=0% Similarity=-0.218 Sum_probs=3.3
Q ss_pred hhhhhhhH
Q 035751 147 AKMGYAFG 154 (195)
Q Consensus 147 ~~~~~~~~ 154 (195)
++.|++++
T Consensus 13 Iv~gvi~g 20 (79)
T 2knc_B 13 VLLSVMGA 20 (79)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 33444444
No 170
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=80.04 E-value=2.4 Score=22.81 Aligned_cols=24 Identities=13% Similarity=-0.017 Sum_probs=11.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHhccC
Q 035751 146 MAKMGYAFGLVIGLSIGYMVFSAR 169 (195)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~ 169 (195)
..+++.++++++.+++++++++++
T Consensus 15 ~gVVgGv~~~~ii~~~~~~~~RRr 38 (44)
T 2ks1_B 15 TGMVGALLLLLVVALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eehhHHHHHHHHHHHHHHHHhhhh
Confidence 334444444444445555555433
No 171
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=72.77 E-value=9.8 Score=24.11 Aligned_cols=47 Identities=19% Similarity=0.118 Sum_probs=28.3
Q ss_pred CcCCCCcchhhcCCCCCcEEEccCCCCCCCCccccCCCCCCcEEeCCC
Q 035751 10 NRFCGEIPKVLGNFKSLKVLNLSHNSLTGNIPVSFDNMTALESLDLSF 57 (195)
Q Consensus 10 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 57 (195)
..++.+-...|.++.+|+.+.+..+- +..-...|.++.+|+.+.+..
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECC
T ss_pred CccCEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcC
Confidence 34454455666777777777776553 324455666677776666654
No 172
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=67.18 E-value=8 Score=20.49 Aligned_cols=24 Identities=13% Similarity=0.050 Sum_probs=12.8
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHh
Q 035751 143 DWKMAKMGYAFGLVIGLSIGYMVF 166 (195)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~ 166 (195)
.+.++.+++..|+++.+++.+.++
T Consensus 9 p~wiIi~s~l~GLllL~li~~~Lw 32 (42)
T 2k1a_A 9 PIWWVLVGVLGGLLLLTILVLAMW 32 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666655555554443
No 173
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=63.38 E-value=7.5 Score=23.69 Aligned_cols=12 Identities=0% Similarity=-0.006 Sum_probs=6.4
Q ss_pred hhhhhHHHHHHH
Q 035751 149 MGYAFGLVIGLS 160 (195)
Q Consensus 149 ~~~~~~~~~~~~ 160 (195)
.+++.+++++++
T Consensus 11 ~~Iv~gvi~gil 22 (79)
T 2knc_B 11 LVVLLSVMGAIL 22 (79)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 555555555544
No 174
>1v54_I STA, cytochrome C oxidase polypeptide VIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.3.1 PDB: 1oco_I* 1occ_I* 1ocz_I* 1ocr_I* 1v55_I* 2dyr_I* 2dys_I* 2eij_I* 2eik_I* 2eil_I* 2eim_I* 2ein_I* 2occ_I* 2ybb_T* 2zxw_I* 3abk_I* 3abl_I* 3abm_I* 3ag1_I* 3ag2_I* ...
Probab=59.69 E-value=6 Score=23.75 Aligned_cols=16 Identities=31% Similarity=0.424 Sum_probs=7.0
Q ss_pred HHhccCccch--hhhhhh
Q 035751 164 MVFSARKPQW--FARMVE 179 (195)
Q Consensus 164 ~~~~~~~~~w--~~~~~~ 179 (195)
.+...||+.+ |++.+|
T Consensus 38 ~v~~pRK~aYadFYknYD 55 (73)
T 1v54_I 38 AVAEKRKKAYADFYRNYD 55 (73)
T ss_dssp HTHHHHHHHHHHHHHTCC
T ss_pred HHhhhHHHHHHHHHHhcC
Confidence 3333344444 444444
No 175
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=57.18 E-value=10 Score=21.25 Aligned_cols=24 Identities=13% Similarity=0.050 Sum_probs=12.7
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHh
Q 035751 143 DWKMAKMGYAFGLVIGLSIGYMVF 166 (195)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~ 166 (195)
.+.++++++..|+++.++++++++
T Consensus 11 p~wiIi~svl~GLllL~li~~~Lw 34 (54)
T 2knc_A 11 PIWWVLVGVLGGLLLLTILVLAMW 34 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666655555544443
No 176
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=55.27 E-value=13 Score=20.78 Aligned_cols=23 Identities=9% Similarity=0.081 Sum_probs=12.1
Q ss_pred chhhhhhhhhHHHHHHHHHHHHh
Q 035751 144 WKMAKMGYAFGLVIGLSIGYMVF 166 (195)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~ 166 (195)
+.++++++.+|+++.++++++++
T Consensus 9 ~WiIi~svl~GLLLL~Lii~~Lw 31 (54)
T 2l8s_A 9 LWVILLSAFAGLLLLMLLILALW 31 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666655555544443
No 177
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=51.53 E-value=24 Score=22.26 Aligned_cols=46 Identities=17% Similarity=0.109 Sum_probs=32.4
Q ss_pred CCCCCCccccCCCCCCcEEeCCCCcCCCCCchhhhcCCCccEEEccc
Q 035751 35 SLTGNIPVSFDNMTALESLDLSFNKLEGRIPKQLLSVTTLALLNLSY 81 (195)
Q Consensus 35 ~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 81 (195)
.++..-...|.++.+|+.+.+-.+ ++..-..+|..+.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 455455667888888888888765 3435566788888888887754
No 178
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=48.64 E-value=20 Score=20.91 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=8.5
Q ss_pred hhhhhhhHHHHHHHHHHH
Q 035751 147 AKMGYAFGLVIGLSIGYM 164 (195)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~ 164 (195)
+++|.++++++.+.+.++
T Consensus 12 ivlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 345555555444444444
No 179
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=42.28 E-value=17 Score=18.09 Aligned_cols=12 Identities=17% Similarity=0.174 Sum_probs=5.2
Q ss_pred hhhhhHHHHHHH
Q 035751 149 MGYAFGLVIGLS 160 (195)
Q Consensus 149 ~~~~~~~~~~~~ 160 (195)
.|++++-+++.+
T Consensus 10 aGIVvgdi~~t~ 21 (33)
T 2l34_A 10 AGIVVGDLVLTV 21 (33)
T ss_dssp HHHHHHHHHHHH
T ss_pred EeEeHHHHHHHH
Confidence 344444444433
No 180
>1scf_A Stem cell factor; steel factor, KIT ligand, MAST cell growth factor, hormone/growth factor complex; HET: 1PE; 2.20A {Homo sapiens} SCOP: a.26.1.2 PDB: 1exz_A 2e9w_C* 2o27_A 2o26_A
Probab=37.84 E-value=6.8 Score=29.23 Aligned_cols=28 Identities=25% Similarity=0.597 Sum_probs=0.0
Q ss_pred ccccchhhhhhhhhHHHHHHHHHHHHhc
Q 035751 140 SWFDWKMAKMGYAFGLVIGLSIGYMVFS 167 (195)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (195)
..+.|..+++...+.+++|+++++++|.
T Consensus 211 ~slq~~~~~l~al~slvigf~~ga~~wk 238 (273)
T 1scf_A 211 SSLHWAAMALPALFSLIIGFAFGALYWK 238 (273)
T ss_dssp ----------------------------
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445777777777888888888888754
No 181
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=30.97 E-value=24 Score=27.86 Aligned_cols=6 Identities=33% Similarity=1.276 Sum_probs=2.3
Q ss_pred Cccchh
Q 035751 169 RKPQWF 174 (195)
Q Consensus 169 ~~~~w~ 174 (195)
+|++|+
T Consensus 358 krk~Wl 363 (363)
T 2iub_A 358 KKKKWL 363 (363)
T ss_dssp TSCC--
T ss_pred HHcccC
Confidence 555663
No 182
>2yew_B E1 envelope glycoprotein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus}
Probab=30.52 E-value=44 Score=26.54 Aligned_cols=16 Identities=19% Similarity=0.547 Sum_probs=7.5
Q ss_pred cccCCCCCC-CCCCCCC
Q 035751 107 HLCGEPLTV-TCSNDAV 122 (195)
Q Consensus 107 ~l~~~~~~~-~c~~~~~ 122 (195)
.+|+....| .|.++.+
T Consensus 360 ~iC~~~~tCa~C~PPkD 376 (427)
T 2yew_B 360 QVCNARITCGKCEPPKD 376 (427)
T ss_dssp EETTEECCBCCCCCCSS
T ss_pred EeccccceecCCCCchh
Confidence 456554443 3544433
No 183
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=28.93 E-value=48 Score=17.09 Aligned_cols=6 Identities=50% Similarity=1.265 Sum_probs=2.2
Q ss_pred hHHHHH
Q 035751 153 FGLVIG 158 (195)
Q Consensus 153 ~~~~~~ 158 (195)
+++++|
T Consensus 17 ~~vmaG 22 (40)
T 1afo_A 17 FGVMAG 22 (40)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 184
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=28.59 E-value=18 Score=16.98 Aligned_cols=16 Identities=31% Similarity=0.735 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHHHHhc
Q 035751 152 AFGLVIGLSIGYMVFS 167 (195)
Q Consensus 152 ~~~~~~~~~~~~~~~~ 167 (195)
.+++++|..++.++|.
T Consensus 6 ~iavvlGa~~Gyf~F~ 21 (26)
T 2ls4_A 6 CIAVAAGAGTGYFLFS 21 (26)
Confidence 3456666667766664
Done!