Your job contains 1 sequence.
>035754
LQTIAFEHCTNHDLFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGR
FVFGKFIESCNESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVM
SALKRLFKFLMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFI
DNMKGSRRKQILHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSL
TKCGSFVVQKCLKYQNAVHYIIEELLNSDQILQVANDKYGNYVIQTALAETMRQDRLSVH
QRLVTKLQQHLAALRVMKYGSNVYKWTTASHPCLA
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 035754
(335 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2167111 - symbol:PUM12 "pumilio 12" species:37... 444 6.6e-42 1
TAIR|locus:2015036 - symbol:PUM8 "pumilio 8" species:3702... 379 5.1e-35 1
DICTYBASE|DDB_G0289987 - symbol:DDB_G0289987 "Pumilio hom... 382 3.8e-34 1
TAIR|locus:2138258 - symbol:PUM11 "pumilio 11" species:37... 354 5.2e-32 1
TAIR|locus:2194699 - symbol:PUM7 "pumilio 7" species:3702... 353 1.5e-31 1
ASPGD|ASPL0000057098 - symbol:AN10071 species:162425 "Eme... 351 2.5e-31 1
TAIR|locus:2164165 - symbol:PUM18 "pumilio 18" species:37... 326 2.1e-29 1
TAIR|locus:2011349 - symbol:PUM9 "pumilio 9" species:3702... 330 2.8e-29 1
TAIR|locus:2144010 - symbol:PUM19 "pumilio 19" species:37... 317 1.9e-28 1
TAIR|locus:2011360 - symbol:PUM10 "pumilio 10" species:37... 316 7.2e-28 1
TAIR|locus:2144711 - symbol:PUM21 "pumilio 21" species:37... 309 3.9e-27 1
POMBASE|SPAC6G9.14 - symbol:SPAC6G9.14 "RNA-binding prote... 289 1.5e-24 1
SGD|S000002982 - symbol:PUF4 "Member of the PUF protein f... 282 1.5e-23 1
DICTYBASE|DDB_G0279557 - symbol:DDB_G0279557 "pumilio RNA... 278 3.1e-23 1
TAIR|locus:2133534 - symbol:PUM15 "pumilio 15" species:37... 261 6.0e-22 1
TAIR|locus:2117552 - symbol:PUM6 "pumilio 6" species:3702... 266 7.2e-22 1
TAIR|locus:2168529 - symbol:PUM16 "pumilio 16" species:37... 250 2.4e-21 1
TAIR|locus:2167786 - symbol:PUM14 "pumilio 14" species:37... 256 2.8e-21 1
TAIR|locus:2167771 - symbol:PUM13 "pumilio 13" species:37... 256 3.0e-21 1
TAIR|locus:2087560 - symbol:PUM5 "pumilio 5" species:3702... 250 4.4e-20 1
POMBASE|SPAC1687.22c - symbol:puf3 "RNA-binding protein P... 248 4.6e-20 1
FB|FBgn0003165 - symbol:pum "pumilio" species:7227 "Droso... 250 8.5e-20 1
TAIR|locus:2043182 - symbol:PUM1 "pumilio 1" species:3702... 245 3.1e-19 1
TAIR|locus:2043047 - symbol:PUM3 "pumilio 3" species:3702... 242 1.9e-18 1
TAIR|locus:2076324 - symbol:PUM4 "pumilio 4" species:3702... 242 2.0e-18 1
TAIR|locus:2043187 - symbol:PUM2 "pumilio 2" species:3702... 237 1.4e-17 1
UNIPROTKB|Q8TB72 - symbol:PUM2 "Pumilio homolog 2" specie... 235 3.3e-17 1
RGD|1311024 - symbol:Pum2 "pumilio homolog 2 (Drosophila)... 233 5.0e-17 1
MGI|MGI:1931751 - symbol:Pum2 "pumilio 2 (Drosophila)" sp... 233 6.4e-17 1
DICTYBASE|DDB_G0279735 - symbol:pufA "RNA binding protein... 231 7.3e-17 1
MGI|MGI:1931749 - symbol:Pum1 "pumilio 1 (Drosophila)" sp... 232 1.0e-16 1
UNIPROTKB|F1NV23 - symbol:PUM2 "Uncharacterized protein" ... 230 1.6e-16 1
UNIPROTKB|E1BWC0 - symbol:PUM2 "Uncharacterized protein" ... 230 1.6e-16 1
CGD|CAL0004399 - symbol:orf19.5381 species:5476 "Candida ... 228 1.8e-16 1
WB|WBGene00004244 - symbol:puf-8 species:6239 "Caenorhabd... 224 2.9e-16 1
UNIPROTKB|H0YDK8 - symbol:PUM1 "Pumilio homolog 1" specie... 226 4.1e-16 1
UNIPROTKB|F6XHY4 - symbol:PUM1 "Uncharacterized protein" ... 227 4.5e-16 1
UNIPROTKB|E2QVA9 - symbol:PUM1 "Uncharacterized protein" ... 227 4.8e-16 1
UNIPROTKB|E7EWT3 - symbol:PUM1 "Pumilio homolog 1" specie... 226 5.1e-16 1
UNIPROTKB|E9PCJ0 - symbol:PUM1 "Pumilio homolog 1" specie... 226 6.1e-16 1
UNIPROTKB|Q2VB19 - symbol:PUM1 "Pumilio homolog 1" specie... 226 6.1e-16 1
UNIPROTKB|Q5T1Z4 - symbol:PUM1 "Pumilio homolog 1" specie... 226 6.1e-16 1
UNIPROTKB|Q5T1Z8 - symbol:PUM1 "Pumilio homolog 1 (Drosop... 226 6.4e-16 1
UNIPROTKB|F1N2B8 - symbol:PUM2 "Uncharacterized protein" ... 223 1.3e-15 1
ZFIN|ZDB-GENE-030131-2074 - symbol:pum1 "pumilio homolog ... 223 1.4e-15 1
UNIPROTKB|B4E2B6 - symbol:PUM2 "Pumilio homolog 2" specie... 222 1.6e-15 1
UNIPROTKB|E2RT57 - symbol:PUM2 "Uncharacterized protein" ... 222 1.7e-15 1
UNIPROTKB|F1SCU6 - symbol:PUM2 "Uncharacterized protein" ... 222 1.7e-15 1
RGD|1307190 - symbol:Pum1 "pumilio homolog 1 (Drosophila)... 219 3.4e-15 1
WB|WBGene00004245 - symbol:puf-9 species:6239 "Caenorhabd... 214 8.4e-15 1
UNIPROTKB|F1STL2 - symbol:PUM1 "Uncharacterized protein" ... 214 9.1e-15 1
UNIPROTKB|E9PR38 - symbol:PUM1 "Pumilio homolog 1" specie... 213 1.8e-14 1
UNIPROTKB|E1BE82 - symbol:PUM1 "Uncharacterized protein" ... 214 1.8e-14 1
UNIPROTKB|H0YEH2 - symbol:PUM1 "Pumilio homolog 1" specie... 213 2.3e-14 1
UNIPROTKB|B4DG92 - symbol:PUM1 "cDNA FLJ56067, highly sim... 213 2.3e-14 1
UNIPROTKB|Q14671 - symbol:PUM1 "Pumilio homolog 1" specie... 213 2.5e-14 1
CGD|CAL0000028 - symbol:MPT5 species:5476 "Candida albica... 200 5.9e-13 1
POMBASE|SPAC4G8.03c - symbol:SPAC4G8.03c "RNA-binding pro... 198 7.8e-13 1
POMBASE|SPCC1682.08c - symbol:SPCC1682.08c "RNA-binding p... 176 2.2e-10 1
CGD|CAL0000998 - symbol:PUF3 species:5476 "Candida albica... 168 2.6e-09 1
SGD|S000003936 - symbol:PUF3 "Protein of the mitochondria... 162 1.1e-08 1
SGD|S000003146 - symbol:MPT5 "mRNA-binding protein of the... 161 1.5e-08 2
ZFIN|ZDB-GENE-081031-76 - symbol:pum2 "pumilio homolog 2 ... 160 2.9e-08 1
ASPGD|ASPL0000000865 - symbol:AN6587 species:162425 "Emer... 157 4.0e-08 1
TAIR|locus:2035312 - symbol:PUM22 "pumilio 22" species:37... 149 7.6e-08 1
POMBASE|SPAC4G9.05 - symbol:mpf1 "meiotic PUF family prot... 152 8.3e-08 1
GENEDB_PFALCIPARUM|PFD0825c - symbol:PFD0825c "RNA-bindin... 125 7.1e-05 1
UNIPROTKB|Q8I1R7 - symbol:PFD0825c "RNA-binding protein o... 125 7.1e-05 1
WB|WBGene00022257 - symbol:puf-11 species:6239 "Caenorhab... 119 0.00032 1
UNIPROTKB|H0YC97 - symbol:PUM1 "Pumilio homolog 1" specie... 112 0.00041 1
WB|WBGene00004239 - symbol:puf-3 species:6239 "Caenorhabd... 118 0.00041 1
UNIPROTKB|Q9U2G4 - symbol:puf-3 "Protein PUF-3" species:6... 118 0.00041 1
>TAIR|locus:2167111 [details] [associations]
symbol:PUM12 "pumilio 12" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005634 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB019234 eggNOG:COG5099 HSSP:Q14671 IPI:IPI00534318
RefSeq:NP_200462.2 UniGene:At.55587 ProteinModelPortal:Q9LVC3
SMR:Q9LVC3 STRING:Q9LVC3 EnsemblPlants:AT5G56510.1 GeneID:835752
KEGG:ath:AT5G56510 TAIR:At5g56510 HOGENOM:HOG000176955
InParanoid:Q9LVC3 OMA:NDIEMIF PhylomeDB:Q9LVC3
Genevestigator:Q9LVC3 Uniprot:Q9LVC3
Length = 596
Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
Identities = 104/312 (33%), Positives = 171/312 (54%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
++ LA+DQ G ++LQ S D ++ +F + + ELM +G ++ K +E CNE
Sbjct: 282 IYYLAKDQHGCRFLQRIFSEKDGNDIEMIFNEIIDYISELMMDPFGNYLVQKLLEVCNED 341
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMT 133
Q I+ IT + L + S D G+ +V+K+++ + ++SALK L+
Sbjct: 342 QRMQIVHSITRKPGLLIKISCDMHGTRAVQKIVETAKREEEISI-IISALKHGIVHLIKN 400
Query: 134 KPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILH 193
G+ V+ +CL+ + F+++AA+ HC+ LA GC L + +G +++ ++
Sbjct: 401 VNGNHVVQRCLQYLLPYCGKFLFEAAITHCVELATDRHGCCVLQKCLGYSEGEQKQHLVS 460
Query: 194 LISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLK 253
I+ NA LS+ GNYV+Q+V L+ + I L G+Y +LS+ KC S VV+KCLK
Sbjct: 461 EIASNALLLSQDPFGNYVLQYVFELQLQWATFEILEQLEGNYTELSMQKCSSNVVEKCLK 520
Query: 254 YQNAVHY--IIEELLNSDQILQVANDKYGNYVIQTALAETMRQDRLSVHQRLVTKLQQHL 311
+ H II EL+N ++ QV D YGNYVIQ AL +Q + +VH LV ++ ++
Sbjct: 521 LADDKHRARIIRELINYGRLDQVMLDPYGNYVIQAAL----KQSKGNVHALLVDAIKLNI 576
Query: 312 AALRVMKYGSNV 323
++LR YG V
Sbjct: 577 SSLRTNPYGKKV 588
>TAIR|locus:2015036 [details] [associations]
symbol:PUM8 "pumilio 8" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0009507
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AC073942 eggNOG:COG5099 HSSP:Q14671
HOGENOM:HOG000176806 IPI:IPI00535613 PIR:B86355 RefSeq:NP_173643.1
UniGene:At.51720 ProteinModelPortal:Q9LM20 SMR:Q9LM20 PRIDE:Q9LM20
EnsemblPlants:AT1G22240.1 GeneID:838829 KEGG:ath:AT1G22240
TAIR:At1g22240 InParanoid:Q9LM20 OMA:FCIDIAT PhylomeDB:Q9LM20
ProtClustDB:CLSN2914398 Genevestigator:Q9LM20 Uniprot:Q9LM20
Length = 515
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 101/314 (32%), Positives = 166/314 (52%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKL--FWVVSGFTFELMSGQYGRFVFGKFIESCN 71
++ +A+DQ G ++LQ G + LD L F V ELM +G ++ K ++ CN
Sbjct: 203 VYFMAKDQHGCRFLQWIFEDGSA--LDALVIFSEVIPHVVELMMDPFGNYLMQKLLDVCN 260
Query: 72 ESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLM 131
E Q IIL +T + + S++ +G+ V++L++ + + V SAL+ F L+
Sbjct: 261 EEQRTQIILMVTSEPGQLIRISLNAYGTRVVQRLVESIKTRKQISL-VKSALRPGFLNLI 319
Query: 132 MTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQI 191
G+ VI +CL+ N+FI++ A + C+ +A H GC L I G +R+++
Sbjct: 320 RDLNGNHVIQRCLQCLSTEDNEFIFEDATKFCIDIATHRHGCCVLQKCIAYSSGLQREKL 379
Query: 192 LHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKC 251
+ IS N+ L++ GNY VQ VL L D I A+ L+GHYV+LS+ K S +V++C
Sbjct: 380 VTEISRNSLFLAQDPYGNYAVQFVLELRDFSAIAAMLAQLKGHYVELSMQKFSSHMVERC 439
Query: 252 LKY-QNAVHYIIEELLNSDQILQVANDKYGNYVIQTALAETMRQDRLSVHQRLVTKLQQH 310
L + + I+ EL++ + D Y N+VIQ ALA T + S+H LV ++ H
Sbjct: 440 LTHCPESRPQIVRELISVPHFDILIQDPYANFVIQAALAVT----KGSLHATLVEVIRPH 495
Query: 311 LAALRVMKYGSNVY 324
+ LR Y ++
Sbjct: 496 -SILRNNPYCKRIF 508
>DICTYBASE|DDB_G0289987 [details] [associations]
symbol:DDB_G0289987 "Pumilio homology domain family
member 4" species:44689 "Dictyostelium discoideum" [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50103 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 dictyBase:DDB_G0289987 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0008270 GO:GO:0003723
EMBL:AAFI02000150 eggNOG:COG5099 RefSeq:XP_635942.1
ProteinModelPortal:Q54GR0 EnsemblProtists:DDB0188671 GeneID:8627424
KEGG:ddi:DDB_G0289987 InParanoid:Q54GR0 OMA:IVRISMN Uniprot:Q54GR0
Length = 1036
Score = 382 (139.5 bits), Expect = 3.8e-34, P = 3.8e-34
Identities = 97/314 (30%), Positives = 161/314 (51%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
++ L +DQ G ++LQ+ L D ++ + +F V + ELM+ +G ++ K +E CN+
Sbjct: 716 IYPLCRDQHGCRFLQKKLEESDLQLTEIIFKEVCDYMLELMTDPFGNYLCQKLLEHCNDR 775
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMT 133
Q II K+ + S++ G+ +V+K+I+ + P + + +LK L+
Sbjct: 776 QRLTIIEKVGTD---IVRISMNMHGTRAVQKMIEYLT-TPEQIQLIKRSLKDSVVPLIQD 831
Query: 134 KPGSSVILQCLEPSYNHKNDFIYQAALEH--CLYLACHEQGCINLNNFIDNMKGSRRKQI 191
G+ VI +CL N FIY A C+ +A H GC L ID+ S++ Q+
Sbjct: 832 LNGNHVIQKCLNKLSPQDNQFIYDAVSSDGSCIAVATHRHGCCVLQRCIDHASESQKLQL 891
Query: 192 LHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKC 251
+ + N+ L + GNYVVQ+VL L L + GH L+ K S VV+KC
Sbjct: 892 IQEVIANSLVLVQDPYGNYVVQYVLDLPFQGLATEMAKRFVGHVPILATQKFSSNVVEKC 951
Query: 252 LKYQNAVH--YIIEELLNSDQILQVANDKYGNYVIQTALAETMRQDRLSVHQRLVTKLQQ 309
L +A+ Y+I+E+++ D +L + D Y NYVIQT+L T+ + H +LV ++
Sbjct: 952 LHVADAITRGYLIQEVIDYDNLLHLLQDPYANYVIQTSL--TISEPHQ--HTKLVEAIRP 1007
Query: 310 HLAALRVMKYGSNV 323
HL L+ YG +
Sbjct: 1008 HLPLLKNTPYGKRI 1021
>TAIR|locus:2138258 [details] [associations]
symbol:PUM11 "pumilio 11" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005737
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AL161513 eggNOG:COG5099 EMBL:AL161813 HOGENOM:HOG000124802
IPI:IPI00541594 PIR:A85089 RefSeq:NP_192624.2 UniGene:At.54217
ProteinModelPortal:Q9LDW3 SMR:Q9LDW3 EnsemblPlants:AT4G08840.1
GeneID:826455 KEGG:ath:AT4G08840 TAIR:At4g08840 InParanoid:Q9LDW3
OMA:MSISDER PhylomeDB:Q9LDW3 Genevestigator:Q9LDW3 Uniprot:Q9LDW3
Length = 556
Score = 354 (129.7 bits), Expect = 5.2e-32, P = 5.2e-32
Identities = 97/312 (31%), Positives = 166/312 (53%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
++ +A+DQ G + LQ+ + G+ + +F V EL + +G ++ K IE CNE
Sbjct: 246 VYLMAKDQLGCRLLQKFVDEGNFVDVMIIFKEVINNVIELGTDPFGNYLIQKLIEVCNEE 305
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMT 133
Q I++++T + L + S++ +G+ V+KLI+ V + V SAL F L
Sbjct: 306 QRTQILIRLTSKPGLLVKISINNYGTRVVQKLIETVTTKEQISL-VKSALVPGFLSLFRE 364
Query: 134 KPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILH 193
G+ VIL CL+ + N FI +AA + C+ +A GC L + G + ++++
Sbjct: 365 LNGNHVILNCLKFFSPNDNKFILEAATKFCIEIATTRHGCCVLQRCVSYSVGEQHEKLVD 424
Query: 194 LISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLK 253
IS N+ L++ GNY+VQ+++ + + + F LRG+YV L+ K GS VV+KCL+
Sbjct: 425 EISRNSLLLAQDPFGNYLVQYIIEKKVGGV--NVLFELRGNYVKLATQKFGSHVVEKCLR 482
Query: 254 YQ-NAVHYIIEELLNSDQILQVANDKYGNYVIQTALAETMRQDRLSVHQRLVTKLQQHLA 312
Y + I+ EL++ + D Y NYVIQ AL++T R S LV K++++
Sbjct: 483 YYPESRSQIVNELVSVLNFGYLLQDPYANYVIQCALSKTKGFVRAS----LVEKVRRY-E 537
Query: 313 ALRVMKYGSNVY 324
L++ Y ++
Sbjct: 538 NLKMTPYCKRIF 549
>TAIR|locus:2194699 [details] [associations]
symbol:PUM7 "pumilio 7" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0003729 "mRNA binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0009507 GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AC012680 eggNOG:COG5099 HSSP:Q14671 IPI:IPI00517199 PIR:H96810
RefSeq:NP_177940.2 UniGene:At.52554 ProteinModelPortal:Q9C9R6
SMR:Q9C9R6 EnsemblPlants:AT1G78160.1 GeneID:844152
KEGG:ath:AT1G78160 TAIR:At1g78160 HOGENOM:HOG000176806
InParanoid:Q9C9R6 OMA:REYSAYS PhylomeDB:Q9C9R6
Genevestigator:Q9C9R6 Uniprot:Q9C9R6
Length = 650
Score = 353 (129.3 bits), Expect = 1.5e-31, P = 1.5e-31
Identities = 93/312 (29%), Positives = 156/312 (50%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
++ +A+DQ G ++LQ G S +F V ELM +G ++ K ++ C E
Sbjct: 338 VYLMAKDQHGCRFLQRIFDEGTSVDAMIIFNEVIAHVVELMMDPFGNYLMQKLLDVCTEE 397
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMT 133
Q I+L T + + S++ +G+ V++L++ + + V AL+ F L+
Sbjct: 398 QRTQIVLVATEEPGQLIRISLNAYGTRVVQRLVETIRSGKQISL-VKLALRPGFLDLIKD 456
Query: 134 KPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILH 193
G+ VI +CL+ N FI+ AA + C +A H GC L I +R++++
Sbjct: 457 LNGNHVIQRCLQCLSTEDNKFIFDAATKFCTEIATHRHGCCVLQKCIAYSMRQQREKLIA 516
Query: 194 LISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLK 253
IS N+ L++ GNY VQ V+ L P + + L+GHYV LS+ K S +V++CL
Sbjct: 517 EISRNSLLLAQDPFGNYAVQFVIELRIPSAVAMMLAQLKGHYVQLSMQKFSSHMVERCLM 576
Query: 254 Y-QNAVHYIIEELLNSDQILQVANDKYGNYVIQTALAETMRQDRLSVHQRLVTKLQQHLA 312
+ + I+ EL++ Q+ D Y N+VIQ ALA T + +H LV ++ H +
Sbjct: 577 HCPESRPQIVRELVSVPHFDQLLQDPYANFVIQAALAAT----KGPLHASLVEVIRPH-S 631
Query: 313 ALRVMKYGSNVY 324
LR Y ++
Sbjct: 632 ILRNNPYCKRIF 643
>ASPGD|ASPL0000057098 [details] [associations]
symbol:AN10071 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BN001308 GO:GO:0003723
EnsemblFungi:CADANIAT00002391 OMA:HKFSSNV Uniprot:C8VU22
Length = 650
Score = 351 (128.6 bits), Expect = 2.5e-31, P = 2.5e-31
Identities = 90/314 (28%), Positives = 158/314 (50%)
Query: 12 HDLFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCN 71
++++ L +DQ G +YLQ L + L +F ELM+ +G ++ K +E N
Sbjct: 239 NEIYGLCKDQHGCRYLQRKLEERNDDQLQMIFAETHSHVIELMTDPFGNYLCQKLLEYSN 298
Query: 72 ESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLM 131
+ Q +++ K QL +A +++ G+ +++K+I+ ++ V+ ALK L+
Sbjct: 299 DEQRTVLVNKAA--PQLVKIA-LNQHGTRALQKMIEFIS-TEEQTQTVIDALKDHVVELV 354
Query: 132 MTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQI 191
G+ VI +CL K+ FIY A C+ + H GC L ID+ G++R ++
Sbjct: 355 QDLNGNHVIQKCLNRLTAEKSQFIYDAVGAQCVTVGTHRHGCCVLQRCIDHASGAQRARL 414
Query: 192 LHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKC 251
+ I+ NA +L + GNYVVQ++L L + + +C LS K S V++KC
Sbjct: 415 IEQITENAFALVQDPFGNYVVQYILDLAEARFTEPLCREFLSRIPKLSKHKFSSNVIEKC 474
Query: 252 LKY--QNAVHYIIEELLNSDQILQVANDKYGNYVIQTALAETMRQDRLSVHQRLVTKLQQ 309
L+ + +IEE+L D++ ++ D Y NYV+QTA+ R R+V ++
Sbjct: 475 LRTADEEMRRQMIEEMLAGDELEKMLRDSYANYVVQTAMDYADPATRA----RIVKYIEP 530
Query: 310 HLAALRVMKYGSNV 323
L +LR +G +
Sbjct: 531 ILPSLRGTPHGRRI 544
>TAIR|locus:2164165 [details] [associations]
symbol:PUM18 "pumilio 18" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0007059 "chromosome segregation"
evidence=RCA] [GO:0007129 "synapsis" evidence=RCA] [GO:0007131
"reciprocal meiotic recombination" evidence=RCA] [GO:0042138
"meiotic DNA double-strand break formation" evidence=RCA]
InterPro:IPR001313 InterPro:IPR016024 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:AB019231
eggNOG:COG5099 HOGENOM:HOG000152208 EMBL:DQ056729 IPI:IPI00533181
RefSeq:NP_200819.1 UniGene:At.55636 ProteinModelPortal:Q9LVG3
SMR:Q9LVG3 EnsemblPlants:AT5G60110.1 GeneID:836133
KEGG:ath:AT5G60110 TAIR:At5g60110 InParanoid:Q9LVG3 OMA:EMISNSD
PhylomeDB:Q9LVG3 ProtClustDB:CLSN2916299 Genevestigator:Q9LVG3
Uniprot:Q9LVG3
Length = 327
Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
Identities = 87/276 (31%), Positives = 144/276 (52%)
Query: 51 FELMSGQYGRFVFGKFIESCNESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVA 110
F LM+ G F + I + ++++L + +T F+ KFGS V+KL+
Sbjct: 46 FNLMTDGDGVSYFKEMISNSDKTELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLLGKSD 105
Query: 111 HLPPLLYHVMSALKRLFKFLMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHE 170
+ +A+ R F + K S V ++ + +Y+ L H L LAC +
Sbjct: 106 DVDAFF---CAAILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHALDLACDQ 162
Query: 171 QGCINLNNFIDNMKGSR-RKQILHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICF 229
GCI LN+ I + R Q+L L++ NA LS SGN+VVQHVL+L D I I
Sbjct: 163 HGCIALNDIITDADDPYYRDQLLELVASNALRLSNDASGNFVVQHVLTLYDSRCIHNIAV 222
Query: 230 ALRGHYVDLSLTKCGSFVVQKCLKYQNAVHYIIEELL--NSDQILQVANDKYGNYVIQTA 287
L G ++LS K GS++V+K L+ + ++ ++ ELL + D+++++A +++GN+V+ A
Sbjct: 223 NLYGQCIELSFKKYGSYIVEKLLEVEESMVVVVVELLGCDGDRLMRLARNEFGNFVVVKA 282
Query: 288 LAETMRQDRLSVHQRLVTKLQQHLAALRVMKYGSNV 323
L T + R+ + LV KL + LR +GSN+
Sbjct: 283 LRFT-KMSRMDLFWGLVQKLMPFIRLLR-RSHGSNI 316
>TAIR|locus:2011349 [details] [associations]
symbol:PUM9 "pumilio 9" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AC021198 eggNOG:COG5099 HOGENOM:HOG000124802 EMBL:DQ446324
IPI:IPI00533721 PIR:D86479 RefSeq:NP_174811.1 UniGene:At.51961
ProteinModelPortal:Q1PFN9 SMR:Q1PFN9 PRIDE:Q1PFN9
EnsemblPlants:AT1G35730.1 GeneID:840477 KEGG:ath:AT1G35730
TAIR:At1g35730 InParanoid:Q1PFN9 OMA:CAEIAIH PhylomeDB:Q1PFN9
ProtClustDB:CLSN2681930 Genevestigator:Q1PFN9 Uniprot:Q1PFN9
Length = 564
Score = 330 (121.2 bits), Expect = 2.8e-29, P = 2.8e-29
Identities = 92/312 (29%), Positives = 154/312 (49%)
Query: 17 LAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLA 76
+A+DQ G + LQ+ + G + + EL +G ++ K + +E Q
Sbjct: 257 MAKDQIGCRVLQKLVEEGTFHEAKVILLAIIDHVVELSMDPFGNYIVQKLFDVSDEEQRT 316
Query: 77 LIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMTKPG 136
LI+ +T + + ++ +G+ V+K+I+ V + V S LK F L+ G
Sbjct: 317 LIVSVLTSNPRELIRICLNTYGTRVVQKMIETVKTKQQIAL-VKSGLKPGFLALVKDLNG 375
Query: 137 SSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLIS 196
+ VI CL+ + N+F+ +AA ++C +A H GC L I N G +R++++ IS
Sbjct: 376 NHVIQSCLQTLGPNDNEFVLEAATKYCAEIAIHRHGCCVLQCCISNSVGLQRERLVAEIS 435
Query: 197 VNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCL-KYQ 255
N+ LS+ GNYVVQ+++ + + + F R HY +L+ K S V++KCL KY
Sbjct: 436 RNSLHLSQDPFGNYVVQYLIDQQVSAVKLLVQF--RMHYAELATQKFSSHVIEKCLRKYP 493
Query: 256 NAVHYIIEELLNSDQILQVANDKYGNYVIQTALAETMRQDRLSVHQRLVTKLQQHLAALR 315
+ I+ ELL + D Y NYVIQTAL+ T + V +LV K+ ++ L
Sbjct: 494 ESRAEIVRELLCVPNFEYLLQDPYANYVIQTALSVT----KGPVRAKLVAKVYRY-GKLH 548
Query: 316 VMKYGSNVYKWT 327
Y ++ T
Sbjct: 549 SSPYCKKIFSKT 560
>TAIR|locus:2144010 [details] [associations]
symbol:PUM19 "pumilio 19" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:AB026632
eggNOG:COG5099 HOGENOM:HOG000152208 IPI:IPI00541936
RefSeq:NP_200826.1 UniGene:At.66750 ProteinModelPortal:Q9LSS8
SMR:Q9LSS8 EnsemblPlants:AT5G60180.1 GeneID:836140
KEGG:ath:AT5G60180 TAIR:At5g60180 InParanoid:Q9LSS8 OMA:NPTETSG
PhylomeDB:Q9LSS8 Genevestigator:Q9LSS8 Uniprot:Q9LSS8
Length = 327
Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 86/276 (31%), Positives = 143/276 (51%)
Query: 51 FELMSGQYGRFVFGKFIESCNESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVA 110
F LM+ G F + I ++++L + +T F+ KFGS V+KL+
Sbjct: 46 FNLMTDGDGVSYFKEMISKSDKTELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLLGKSD 105
Query: 111 HLPPLLYHVMSALKRLFKFLMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHE 170
+ +A+ R F + K S V ++ + +Y+ L H L LAC +
Sbjct: 106 DVDAFF---CAAILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHALDLACDQ 162
Query: 171 QGCINLNNFIDNMKGSR-RKQILHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICF 229
GCI LN+ I + R Q+L L+ NA LS SGN+VVQHVL+L D I I
Sbjct: 163 HGCIALNDIITDADDPYYRDQLLELVVSNALRLSNDASGNFVVQHVLTLYDSRCIHNIAV 222
Query: 230 ALRGHYVDLSLTKCGSFVVQKCLKYQNAVHYIIEELL--NSDQILQVANDKYGNYVIQTA 287
L G ++LS K GS++V+K L+ + ++ ++ ELL + D+++++A +++GN+V+ A
Sbjct: 223 NLYGQCIELSFKKYGSYIVEKLLEVEESMVVVVVELLGCDGDRLMRLARNEFGNFVVVKA 282
Query: 288 LAETMRQDRLSVHQRLVTKLQQHLAALRVMKYGSNV 323
L T ++ R+ + LV KL + LR +G+N+
Sbjct: 283 LRFT-KEMRMDLFWGLVQKLMPFIHLLR-RSHGNNI 316
>TAIR|locus:2011360 [details] [associations]
symbol:PUM10 "pumilio 10" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AC021198 eggNOG:COG5099 HSSP:Q14671 IPI:IPI00544215 PIR:F86479
RefSeq:NP_174813.1 UniGene:At.51962 ProteinModelPortal:Q9LP21
SMR:Q9LP21 PRIDE:Q9LP21 EnsemblPlants:AT1G35750.1 GeneID:840480
KEGG:ath:AT1G35750 TAIR:At1g35750 HOGENOM:HOG000124802
InParanoid:Q9LP21 OMA:GFEEMMA PhylomeDB:Q9LP21
Genevestigator:Q9LP21 Uniprot:Q9LP21
Length = 528
Score = 316 (116.3 bits), Expect = 7.2e-28, P = 7.2e-28
Identities = 93/314 (29%), Positives = 158/314 (50%)
Query: 17 LAQDQEGSQYLQENLSSGDSRILDK--LFWVVSGFTFELMSGQYGRFVFGKFIESCNESQ 74
+A+DQ G + LQ+ + G +LD +F + EL G ++ K + +E Q
Sbjct: 221 MARDQIGCRALQKLVEEGT--VLDSKVIFLEIIDHVVELSMDPLGNYIVQKLLVVSDEEQ 278
Query: 75 LALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMTK 134
+I+ +T + + + ++ G+ ++K+IK V + V SAL+ F L+
Sbjct: 279 RTMIVSVLTSKPRELIKICLNTNGTRVIQKMIKTVKTKQQIAL-VKSALEPGFLVLVNDS 337
Query: 135 PGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHL 194
G V+ CLE + N F+ +AA E+C LA H+ GC L + N G + ++++
Sbjct: 338 NGYHVLQSCLEFLVPNDNKFVVEAATEYCAQLATHQYGCYVLQCSLINTVGLQHERLVAE 397
Query: 195 ISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCL-K 253
IS ++ LS+ GNYVVQ ++ + + + R H ++L+ K S V++KCL K
Sbjct: 398 ISRDSLRLSQDPFGNYVVQCLIDQQVSSV--NLLLPFRTHCIELATQKFSSHVIEKCLRK 455
Query: 254 YQNAVHYIIEELLNSDQILQVANDKYGNYVIQTALAETMRQDRLSVHQRLVTKLQQHLAA 313
Y + I+ ELL+ Q+ D Y NYVIQTAL+ T + +V RLV K+++
Sbjct: 456 YPESRAEIVRELLSYPNFEQLLQDPYANYVIQTALSVT----KGAVRARLVEKVKR-FGK 510
Query: 314 LRVMKYGSNVYKWT 327
L+ Y ++ T
Sbjct: 511 LQSNPYCKKIFSKT 524
>TAIR|locus:2144711 [details] [associations]
symbol:PUM21 "pumilio 21" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
PROSITE:PS50302 PROSITE:PS50303 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:AB020752
EMBL:AL353994 eggNOG:COG5099 IPI:IPI00537619 PIR:T49937
RefSeq:NP_196523.1 UniGene:At.54788 ProteinModelPortal:Q9LXC5
SMR:Q9LXC5 EnsemblPlants:AT5G09610.1 GeneID:830820
KEGG:ath:AT5G09610 TAIR:At5g09610 HOGENOM:HOG000153154
InParanoid:Q9LXC5 OMA:HQEPGES PhylomeDB:Q9LXC5
ProtClustDB:CLSN2916885 Genevestigator:Q9LXC5 Uniprot:Q9LXC5
Length = 517
Score = 309 (113.8 bits), Expect = 3.9e-27, P = 3.9e-27
Identities = 78/255 (30%), Positives = 136/255 (53%)
Query: 72 ESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLM 131
ES L I +T ++FL + +++GS +++ L + L LL+ A+ F LM
Sbjct: 246 ESHLFKIGSALTTTKRIFLHLATNQYGSQALRILFRRSPSLDHLLF---CAVDTNFFLLM 302
Query: 132 MTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQI 191
K G +I+ + K + +Y+ E+ L+LA E GC+ LNN + ++G R I
Sbjct: 303 SDKYGRGLIIPAIRAVDKTKKESLYKLTYEYTLHLARLETGCLALNNVLQEIRGIYRDLI 362
Query: 192 LHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKC 251
++ NA LS G +VVQ++L L++P AI LRG + L++ + GS+VV+KC
Sbjct: 363 FECVANNADWLSFDPYGTHVVQNILILQNPVATTAIAERLRGSFFRLAMERQGSYVVEKC 422
Query: 252 LKYQNAVHYIIEELL-NSDQILQVANDKYGNYVIQTALAETMRQDRLSVHQRLVTKLQQH 310
LK A ++EE N+ + +++ DK+GN+V+Q+AL ++ + + V KL+ H
Sbjct: 423 LKSDFARDQVLEEFRGNAKEWVRMTTDKFGNFVVQSALRVMKEKEMRPLLREFVEKLRPH 482
Query: 311 LAALRVMKYGSNVYK 325
+ + + G N +
Sbjct: 483 FGKMEIGR-GRNTLR 496
>POMBASE|SPAC6G9.14 [details] [associations]
symbol:SPAC6G9.14 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPAC6G9.14 GO:GO:0005829 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
GO:GO:0000288 eggNOG:COG5099 OrthoDB:EOG42NN7Z PIR:T39076
RefSeq:NP_594123.1 ProteinModelPortal:Q92359
EnsemblFungi:SPAC6G9.14.1 GeneID:2542056 KEGG:spo:SPAC6G9.14
NextBio:20803131 Uniprot:Q92359
Length = 681
Score = 289 (106.8 bits), Expect = 1.5e-24, P = 1.5e-24
Identities = 89/326 (27%), Positives = 156/326 (47%)
Query: 11 NHDLFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESC 70
N ++ S +DQ G +YLQ L + +D +F + LM +G ++ K E
Sbjct: 345 NSNILSFCKDQHGCRYLQRLLEKKNQSHIDAVFAETHPYLAVLMVDAFGNYLCQKLFEHA 404
Query: 71 NESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFL 130
+E+Q + I I +L + S + G+ +++K+I +V+ P + +++AL+ L
Sbjct: 405 SEAQRSTFIQIIA--PKLVPI-SFNMHGTRALQKIIDLVSS-PDQISCIVNALRPNVVLL 460
Query: 131 MMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQ 190
G+ VI +CL FI+ A E L ++ H GC + D+ ++ +Q
Sbjct: 461 TKDLNGNHVIQKCLNKFSQEDCQFIFDAICEDPLDVSTHRHGCCVVQRCFDHASPAQIEQ 520
Query: 191 ILHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQK 250
++ I +A +L + GNYV+Q+VL L +P +AI LS K S V++K
Sbjct: 521 LVEHIVPHALTLVQDAFGNYVLQYVLELNNPNHTEAIISYFLYKVRALSTQKFSSNVMEK 580
Query: 251 CLKYQNAV--HYIIEELLNSDQILQVANDKYGNYVIQTALAETMRQDRLSVHQR--LVTK 306
C+ + A +I EL++ + ++ D + NYVIQTAL D SV QR LV +
Sbjct: 581 CIFFAPAAIKEKLISELMDEKHLPKLLRDSFANYVIQTAL------DNASVKQRAELVER 634
Query: 307 LQQHLAALRVMKYGSNVYKWTTASHP 332
++ + +++ G + HP
Sbjct: 635 IKPLIPSIKNTPCGRRILSKLERRHP 660
>SGD|S000002982 [details] [associations]
symbol:PUF4 "Member of the PUF protein family" species:4932
"Saccharomyces cerevisiae" [GO:0008104 "protein localization"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003729
"mRNA binding" evidence=ISS;IDA] [GO:0001308 "negative regulation
of chromatin silencing involved in replicative cell aging"
evidence=IGI;IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IGI]
[GO:0017148 "negative regulation of translation" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SGD:S000002982 GO:GO:0005737 GO:GO:0008104
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BK006941
GO:GO:0017148 GO:GO:0003729 GO:GO:0006351 EMBL:S58126 GO:GO:0000288
eggNOG:COG5099 GeneTree:ENSGT00390000017241 GO:GO:0001308
OrthoDB:EOG42NN7Z EMBL:S57889 EMBL:Z72536 PIR:S64016
RefSeq:NP_011501.1 PDB:3BWT PDB:3BX2 PDB:3BX3 PDB:4DZS PDBsum:3BWT
PDBsum:3BX2 PDBsum:3BX3 PDBsum:4DZS ProteinModelPortal:P25339
SMR:P25339 DIP:DIP-2638N IntAct:P25339 MINT:MINT-425380
STRING:P25339 PaxDb:P25339 PeptideAtlas:P25339 EnsemblFungi:YGL014W
GeneID:852870 KEGG:sce:YGL014W CYGD:YGL014w HOGENOM:HOG000115799
OMA:FRRQTFH EvolutionaryTrace:P25339 NextBio:972496
Genevestigator:P25339 GermOnline:YGL014W Uniprot:P25339
Length = 888
Score = 282 (104.3 bits), Expect = 1.5e-23, P = 1.5e-23
Identities = 84/297 (28%), Positives = 148/297 (49%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
+ SL +DQ G ++LQ+ L S+ D +F +T ELM+ +G ++ K +E
Sbjct: 568 IHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTE 627
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMT 133
Q +++ KI+ F+ S++ G+ +++KLI+ + V+ +L+ L
Sbjct: 628 Q-RIVLTKISSPH--FVEISLNPHGTRALQKLIECIK-TDEEAQIVVDSLRPYTVQLSKD 683
Query: 134 KPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILH 193
G+ VI +CL+ FI+ A + C+ +A H GC L +D+ + +
Sbjct: 684 LNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIATHRHGCCVLQRCLDHGTTEQCDNLCD 743
Query: 194 LISVNAASLSRHRSGNYVVQHVLSLE-DPFLID---AICFALRGHYVDLSLTKCGSFVVQ 249
+ L+ GNYVVQ++++ E + D I L+ ++LS+ K GS V++
Sbjct: 744 KLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIHKFGSNVIE 803
Query: 250 KCLKYQNAVHYIIEELLNSDQ---ILQVANDKYGNYVIQTALAETMRQDRLSVHQRL 303
K LK +I E+LN+ I + ND YGNYV+QTAL + +Q+ +++RL
Sbjct: 804 KILKTAIVSEPMILEILNNGGETGIQSLLNDSYGNYVLQTALDISHKQNDY-LYKRL 859
Score = 143 (55.4 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 48/200 (24%), Positives = 91/200 (45%)
Query: 130 LMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRK 189
LM G+ +I + LE + + + + H + ++ + G L I+ +K
Sbjct: 607 LMTDSFGNYLIQKLLEEVTTEQRIVLTKISSPHFVEISLNPHGTRALQKLIECIKTDEEA 666
Query: 190 QIL-HLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVV 248
QI+ + LS+ +GN+V+Q L P I A+ +D++ + G V+
Sbjct: 667 QIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIATHRHGCCVL 726
Query: 249 QKCLKYQNAVHYIIEELLN-SDQILQVAN----DKYGNYVIQTALAETMRQDRLSVHQRL 303
Q+CL H E+ N D++L + + D +GNYV+Q + + +++ ++
Sbjct: 727 QRCLD-----HGTTEQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKI 781
Query: 304 VTKLQQHLAALRVMKYGSNV 323
V L+ L + K+GSNV
Sbjct: 782 VHLLKPRAIELSIHKFGSNV 801
>DICTYBASE|DDB_G0279557 [details] [associations]
symbol:DDB_G0279557 "pumilio RNA-binding
region-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 dictyBase:DDB_G0279557 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AAFI02000031 eggNOG:COG5099 RefSeq:XP_641698.1
ProteinModelPortal:Q54WL9 EnsemblProtists:DDB0305068 GeneID:8622107
KEGG:ddi:DDB_G0279557 InParanoid:Q54WL9 OMA:STHAANS Uniprot:Q54WL9
Length = 782
Score = 278 (102.9 bits), Expect = 3.1e-23, P = 3.1e-23
Identities = 80/287 (27%), Positives = 147/287 (51%)
Query: 5 AFEHCTNHDLFSLAQDQEGSQYLQENLSSG-DSRILDKLFWVVSGFTFELMSGQYGRFVF 63
+ E T ++ L + Q G ++LQ+ L DS + +F V ELM YG+++
Sbjct: 467 SLEEITGQ-IYHLTKYQAGCRFLQKKLEEKPDSEHVTLIFNEVFDHLNELMIDPYGQYLI 525
Query: 64 GKFIESCNESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSAL 123
+ ++ C+ +Q I+ KI + F + +G ++KL++ ++ P + +++++
Sbjct: 526 PQLMKYCDNNQRRQIVDKIAPSVETF---ACHVYGIHGIQKLLQYLS--PDQVESIIASI 580
Query: 124 KRLFKFLMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNM 183
K L G+ +I L+ N F+ A + + + H+ GC +N IDN
Sbjct: 581 KGKVIQLSKDNKGNYLIQSFLKQFSPEVNQFVCDAIMGNIEEICTHKVGCTVVNRCIDNA 640
Query: 184 KGSRRKQILHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKC 243
+ ++++ I+ ++ L + + GNYVVQH+LS + I +L+ + +LS+ K
Sbjct: 641 NPEQLEKLVDKITEHSLKLVQDQFGNYVVQHLLSKNKAYSSKLIV-SLKDNIAELSIQKF 699
Query: 244 GSFVVQKCLKYQNAVHY--IIEELLNSDQILQVANDKYGNYVIQTAL 288
S V++KCL+ + Y II+ L +D IL + DKY N+VIQTAL
Sbjct: 700 SSNVIEKCLQLADTPTYELIIKALTEAD-ILSLLQDKYANFVIQTAL 745
Score = 185 (70.2 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 53/211 (25%), Positives = 98/211 (46%)
Query: 118 HVMSALKRLFKFL--MMTKP-GSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCI 174
HV +F L +M P G +I Q ++ N++ I ACH G
Sbjct: 500 HVTLIFNEVFDHLNELMIDPYGQYLIPQLMKYCDNNQRRQIVDKIAPSVETFACHVYGIH 559
Query: 175 NLNNFIDNMKGSRRKQILHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGH 234
+ + + + + I+ I LS+ GNY++Q L P + +C A+ G+
Sbjct: 560 GIQKLLQYLSPDQVESIIASIKGKVIQLSKDNKGNYLIQSFLKQFSPEVNQFVCDAIMGN 619
Query: 235 YVDLSLTKCGSFVVQKCLKYQNAVHYIIEELLN--SDQILQVANDKYGNYVIQTALAETM 292
++ K G VV +C+ NA +E+L++ ++ L++ D++GNYV+Q L++
Sbjct: 620 IEEICTHKVGCTVVNRCI--DNANPEQLEKLVDKITEHSLKLVQDQFGNYVVQHLLSKNK 677
Query: 293 RQDRLSVHQRLVTKLQQHLAALRVMKYGSNV 323
+ +L+ L+ ++A L + K+ SNV
Sbjct: 678 -----AYSSKLIVSLKDNIAELSIQKFSSNV 703
>TAIR|locus:2133534 [details] [associations]
symbol:PUM15 "pumilio 15" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AF076275 eggNOG:COG5099 EMBL:AL161512 IPI:IPI00522940
PIR:T01828 RefSeq:NP_192596.1 UniGene:At.54205
ProteinModelPortal:O81465 SMR:O81465 PRIDE:O81465
EnsemblPlants:AT4G08560.1 GeneID:826417 KEGG:ath:AT4G08560
TAIR:At4g08560 InParanoid:O81465 OMA:ENIRREM PhylomeDB:O81465
Genevestigator:O81465 InterPro:IPR010264 Pfam:PF05938
Uniprot:O81465
Length = 477
Score = 261 (96.9 bits), Expect = 6.0e-22, P = 6.0e-22
Identities = 91/290 (31%), Positives = 140/290 (48%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
L S A+D S LQ ++ G +DK+F + ELM YG VF K +E C +
Sbjct: 155 LLSRAKDGIESHMLQYVIAKGLKETIDKIFDNLISHVCELMLDYYGHKVFRKLMEKCTDE 214
Query: 74 QLALIILKITFQDQL-FLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMM 132
Q+ + L I ++ F+ V G+ +++ L++ + + M L + L++
Sbjct: 215 QITRV-LDIVLEEPFEFVRLCVHTHGTHAIQGLMRSLCS-EEQISRFMETL--CYVSLLL 270
Query: 133 TKP--GSSVILQCLEP-SYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRK 189
TK VIL C S +H ++ + +++C +A + GC L I R
Sbjct: 271 TKDVIAHRVILFCFNQFSPSHTR-YLLEVIVQNCYQVAIDQNGCCMLKKLIRQSSRELRD 329
Query: 190 QIL-HLISVNAASLSRHRSG----------NYVVQHVLSLEDPFLIDAICFALRGHYVDL 238
++ +IS+ A L + G NYVVQ++L L+D + A+ L G+YV L
Sbjct: 330 PLIKEIISI-AVRLCGNCYGTLTPKSLLVRNYVVQYLLRLKDYEVTSALSKHLDGNYVQL 388
Query: 239 SLTKCGSFVVQKCLKYQN-AVHYIIEELLNSDQILQVANDKYGNYVIQTA 287
S K GS VVQKCL+ + + II ELL+ L V D YG+YVIQTA
Sbjct: 389 SYDKYGSHVVQKCLESREFSSRRIIAELLSDIDSLLV--DPYGDYVIQTA 436
>TAIR|locus:2117552 [details] [associations]
symbol:PUM6 "pumilio 6" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003729
"mRNA binding" evidence=IDA] [GO:0009165 "nucleotide biosynthetic
process" evidence=RCA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0009507 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161564
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003729 EMBL:AL049480 eggNOG:COG5099 HSSP:Q14671
HOGENOM:HOG000238460 EMBL:AF360298 EMBL:AY133866 EMBL:AK318840
EMBL:AK319148 IPI:IPI00518278 IPI:IPI00520481 IPI:IPI00656838
IPI:IPI00972816 PIR:T04242 RefSeq:NP_001031720.1 RefSeq:NP_567733.1
RefSeq:NP_974618.2 UniGene:At.21892 UniGene:At.28428
ProteinModelPortal:Q9C5E7 SMR:Q9C5E7 STRING:Q9C5E7 PaxDb:Q9C5E7
PRIDE:Q9C5E7 EnsemblPlants:AT4G25880.1 GeneID:828694
KEGG:ath:AT4G25880 TAIR:At4g25880 InParanoid:Q9C5E7 OMA:MEGSFLA
PhylomeDB:Q9C5E7 ProtClustDB:CLSN2689613 Genevestigator:Q9C5E7
Uniprot:Q9C5E7
Length = 861
Score = 266 (98.7 bits), Expect = 7.2e-22, P = 7.2e-22
Identities = 89/322 (27%), Positives = 150/322 (46%)
Query: 10 TNHDLFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIES 69
T H + + DQ GS+++Q+ L + +F + +LM+ +G +V KF E
Sbjct: 534 TGH-IVEFSADQHGSRFIQQKLENCKPEEKAAVFREILPHACKLMTDVFGNYVIQKFFEY 592
Query: 70 CNESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKF 129
N +Q + ++ Q+ L S+ +G ++K + V+ P + L
Sbjct: 593 GNSTQRKELADQL--MGQIVPL-SLQMYGCRVIQKALDVIE--PDQRVRLARELDGQVMR 647
Query: 130 LMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRR- 188
+ + G+ VI +C+E K F+ A L+ H GC + ++ +
Sbjct: 648 CVRDQNGNHVIQKCIENIPADKVGFMLYAFRGQVSSLSMHPYGCRVIQRLLERCSHDHQC 707
Query: 189 KQILHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVV 248
+ I I + LS+ + GNYV QHVL + I L GH V LSL K S V+
Sbjct: 708 RFITEEILESVCVLSKDQYGNYVTQHVLEKGTSEERERIGRKLSGHIVQLSLHKFASNVI 767
Query: 249 QKCLKYQNAVH--YIIEELLNSDQ----ILQVANDKYGNYVIQTALAETMRQD-RLSVHQ 301
+KCL+Y V II+E+ D+ +L + D+YGNYV+Q + ET D RL+
Sbjct: 768 EKCLEYGGRVERDLIIKEIAGPDESYNSLLMMMKDQYGNYVVQK-IFETCTADQRLT--- 823
Query: 302 RLVTKLQQHLAALRVMKYGSNV 323
L ++++ H +AL+ YG ++
Sbjct: 824 -LFSRVRMHASALKKYTYGKHI 844
>TAIR|locus:2168529 [details] [associations]
symbol:PUM16 "pumilio 16" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB016890 IPI:IPI00533013 RefSeq:NP_200736.1 UniGene:At.65693
ProteinModelPortal:Q9FIE9 PRIDE:Q9FIE9 EnsemblPlants:AT5G59280.1
GeneID:836046 KEGG:ath:AT5G59280 TAIR:At5g59280
HOGENOM:HOG000152208 OMA:CTRNIAD Genevestigator:Q9FIE9
Uniprot:Q9FIE9
Length = 332
Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 69/229 (30%), Positives = 120/229 (52%)
Query: 89 FLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMTKPGSSVILQCLEPSY 148
F++ + +K GS +++KL+ + + + A+ RLF +M K S V +Q +
Sbjct: 87 FMVITTNKNGSKTLQKLMGMSDDMDVFFFE---AIMRLFIHVMTDKYASYVTIQGMRVFQ 143
Query: 149 NHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSR-RKQILHLISVNAASLSRHRS 207
K + +Y L + +LA + GCI LN I ++ R Q+L +++ NA LS
Sbjct: 144 QDKRELMYDQILRYACFLAGDQYGCIALNEIITDLDDPYYRDQLLDIVANNALLLSNDAY 203
Query: 208 GNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLKYQNA-VHYIIEELL 266
GN+VVQHVL L D I L G+ V+LS K GS++V++ L+ + + ++ +LL
Sbjct: 204 GNFVVQHVLKLRDSRCTRNIADKLCGYCVELSFKKYGSYIVERLLEAGDVPMATVVLDLL 263
Query: 267 --NSDQILQVANDKYGNYVIQTALAETMRQDRLSVHQRLVTKLQ--QHL 311
++ ++++A +YGN+V+ AL T + LV +L +HL
Sbjct: 264 ACKTEMLIRLARSEYGNFVVCKALELTNEILTADLFYGLVNRLMPYRHL 312
>TAIR|locus:2167786 [details] [associations]
symbol:PUM14 "pumilio 14" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005634 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB008267 eggNOG:COG5099 HOGENOM:HOG000136003
ProtClustDB:CLSN2686651 EMBL:DQ056705 IPI:IPI00526385
RefSeq:NP_199125.2 UniGene:At.55331 ProteinModelPortal:Q4PSD1
SMR:Q4PSD1 PRIDE:Q4PSD1 EnsemblPlants:AT5G43110.1 GeneID:834328
KEGG:ath:AT5G43110 TAIR:At5g43110 InParanoid:Q4PSD1
PhylomeDB:Q4PSD1 Genevestigator:Q4PSD1 Uniprot:Q4PSD1
Length = 518
Score = 256 (95.2 bits), Expect = 2.8e-21, P = 2.8e-21
Identities = 83/316 (26%), Positives = 157/316 (49%)
Query: 16 SLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQL 75
+ A+D+E S+ L ++ G +D ++ + G ELM YG V + C+ Q+
Sbjct: 207 AFAKDKEMSERLGMSIFQGTKETVDAIYNGLIGDICELMVDPYGSDVVQLLMRRCSSEQI 266
Query: 76 ALIILKITFQDQLFLLASVDKFGSSSVKKLIKVV-AHLPPLLYHVMSALKRLFKFLMMTK 134
++ +T Q F+ +D G+++++ L+ + + ++ ++ + L +
Sbjct: 267 VQLVDIVTQQMFQFVNICIDSLGTNAIQVLLTCINERAKDQIPRIVDVVRTVALQLSKSN 326
Query: 135 PGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLN-----NFIDNMKGSRRK 189
VIL C H + + +++C +A + GC L + + N++ R++
Sbjct: 327 HAIFVILACFRLFPLHCR-LLLELIVQNCHQIAIDQHGCCLLQLCFNKDRVPNLE-IRQR 384
Query: 190 QILHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQ 249
I+ I+ NA L + GNYVVQ+++ L + +LIDA+ L G+Y L+ K GS VQ
Sbjct: 385 LIMEAIA-NALRLCLNCYGNYVVQYIVELNNRYLIDALVRQLIGNYAHLARNKYGSHAVQ 443
Query: 250 KCLKYQ--NAVHYIIEELLNSDQILQVANDKYGNYVIQTALAETMRQDRLSVHQRLVTKL 307
K LK + ++ +I+ L D +L D +GNYVIQTA + + D V + L +
Sbjct: 444 KLLKLRWIDSRVIVIDLLREIDTLLL---DPFGNYVIQTAWFVS-KDD---VRRMLRYHI 496
Query: 308 QQHLAALRVMKYGSNV 323
++++ +R K+G+ V
Sbjct: 497 ERNIPMMRCNKFGNKV 512
>TAIR|locus:2167771 [details] [associations]
symbol:PUM13 "pumilio 13" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB008267 eggNOG:COG5099 IPI:IPI00522991 RefSeq:NP_199123.1
UniGene:At.55330 ProteinModelPortal:Q9FMH4 SMR:Q9FMH4 PaxDb:Q9FMH4
PRIDE:Q9FMH4 EnsemblPlants:AT5G43090.1 GeneID:834325
KEGG:ath:AT5G43090 TAIR:At5g43090 HOGENOM:HOG000136003
InParanoid:Q9FMH4 OMA:NGERNIW PhylomeDB:Q9FMH4
ProtClustDB:CLSN2686651 Genevestigator:Q9FMH4 Uniprot:Q9FMH4
Length = 527
Score = 256 (95.2 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 82/315 (26%), Positives = 148/315 (46%)
Query: 15 FSLAQDQEGSQYLQENLSSGDSRILDKLF-WVVSGFTFELMSGQYGRFVFGKFIESCNES 73
FS+A D+ S+ L++ + G +D +F ++ G ELM +G V I C+
Sbjct: 214 FSIATDRVWSKELEKTIFVGTKETIDMIFDGLIVGIC-ELMVDPFGNDVVKLLIGKCSSE 272
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVV-AHLPPLLYHVMSALKRLFKFLMM 132
Q+ LI+ +T F+ + G+ +++ L+ + + +M A+ + L
Sbjct: 273 QIILIVDVVTRHISKFVNICFNPIGTLAIQVLLTSIHERANNQIPRIMDAISSVALQLTR 332
Query: 133 TKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSR---RK 189
VIL C + + + + +HC +A + GC L D + R+
Sbjct: 333 NTNAKYVILACFRMFTSSQCRRLLEVVSQHCYQIAIDQNGCCLLQQCFDKERVPNHEIRQ 392
Query: 190 QILHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQ 249
+++ + +A L + GNYVVQ+V+ L++ D + L +Y L+ K GS VVQ
Sbjct: 393 RLISEVIEHALKLCLNCHGNYVVQYVVELDNQHETDLLVNKLLRNYAHLARNKYGSHVVQ 452
Query: 250 KCLKYQNA-VHYIIEELLNSDQILQVANDKYGNYVIQTALAETMRQDRLSVHQRLVTKLQ 308
K LK + I+ +LL L + D +GNYVIQTA + ++D V Q L ++
Sbjct: 453 KLLKLRGIDSKLIVVDLLRGIDTLLL--DPFGNYVIQTAWFVS-KED---VRQMLRYYIE 506
Query: 309 QHLAALRVMKYGSNV 323
+++ +R K+G+ +
Sbjct: 507 RNIRLMRCNKFGNKI 521
>TAIR|locus:2087560 [details] [associations]
symbol:PUM5 "pumilio 5" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0005773 "vacuole" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006487 "protein N-linked glycosylation"
evidence=RCA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005829
GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AP000383 eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460
EMBL:AK228410 EMBL:BX824276 IPI:IPI00527056 IPI:IPI00972845
RefSeq:NP_188660.3 UniGene:At.38266 ProteinModelPortal:Q9LJX4
SMR:Q9LJX4 STRING:Q9LJX4 PaxDb:Q9LJX4 PRIDE:Q9LJX4
EnsemblPlants:AT3G20250.1 GeneID:821569 KEGG:ath:AT3G20250
TAIR:At3g20250 InParanoid:Q9LJX4 OMA:QHKYASN PhylomeDB:Q9LJX4
Genevestigator:Q9LJX4 Uniprot:Q9LJX4
Length = 961
Score = 250 (93.1 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 79/311 (25%), Positives = 146/311 (46%)
Query: 20 DQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALII 79
DQ GS+++Q+ L +F V +LM+ +G +V KFIE +Q ++
Sbjct: 639 DQHGSRFIQQKLEHCSDEEKASVFSEVLPQASKLMTDVFGNYVIQKFIEHGTPAQREELV 698
Query: 80 LKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMTKPGSSV 139
++ Q + S+ +G ++K ++V+ + + + K + + G+ V
Sbjct: 699 KQLAGQ---MVSLSLQMYGCRVIQKALEVI-DVDQKTELIRELDGNVLK-CVRDQNGNHV 753
Query: 140 ILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQ-ILHLISVN 198
I +C+E + F+ A L+ H GC + +++ I+ I +
Sbjct: 754 IQKCIESMPAGRIGFVIAAFRGQVATLSTHPYGCRVIQRILEHCSDDEETHCIIDEILES 813
Query: 199 AASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLKYQNAV 258
A +L+ + GNYV QHVL P I L G+ V +S K S VV+KCL++ ++
Sbjct: 814 AFALAHDQYGNYVTQHVLERGKPDERRQIIEKLTGNVVQMSQHKYASNVVEKCLEHADST 873
Query: 259 H--YIIEELLNSDQ----ILQVANDKYGNYVIQTALAETMRQDRLSVHQRLVTKLQQHLA 312
++IEE++ + +L + D++ NYV+Q L + Q R + LV +++ HL
Sbjct: 874 EREFLIEEIMGKSEEDNHLLAMMKDQFANYVVQKVLEISKDQQR----EILVQRMKIHLQ 929
Query: 313 ALRVMKYGSNV 323
+LR YG ++
Sbjct: 930 SLRKYTYGKHI 940
Score = 121 (47.7 bits), Expect = 0.00045, P = 0.00045
Identities = 72/313 (23%), Positives = 136/313 (43%)
Query: 16 SLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYG-RFVFGKFIESCNESQ 74
S+ D + +L E L S ++R L+ ++G E Q+G RF+ K +E C++ +
Sbjct: 602 SIVDDLKRHSFLDE-LKSPNARKLE--LSDIAGRVVEFSVDQHGSRFIQQK-LEHCSDEE 657
Query: 75 LALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAH-LPPLLYHVMSALKRLFKFLMMT 133
A + ++ Q + D FG+ ++K I+ H P ++ L L +
Sbjct: 658 KASVFSEVLPQASKLM---TDVFGNYVIQKFIE---HGTPAQREELVKQLAGQMVSLSLQ 711
Query: 134 KPGSSVILQCLEP-SYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQIL 192
G VI + LE + K + I + + L + G + I++M R ++
Sbjct: 712 MYGCRVIQKALEVIDVDQKTELIRELD-GNVLKCVRDQNGNHVIQKCIESMPAGRIGFVI 770
Query: 193 HLISVNAASLSRHRSGNYVVQHVLSL-----EDPFLIDAICFALRGHYVDLSLTKCGSFV 247
A+LS H G V+Q +L E +ID I L + L+ + G++V
Sbjct: 771 AAFRGQVATLSTHPYGCRVIQRILEHCSDDEETHCIIDEI---LESAFA-LAHDQYGNYV 826
Query: 248 VQKCLKY--QNAVHYIIEELLNSDQILQVANDKYGNYVIQTALAETMRQDRLSVHQRLVT 305
Q L+ + IIE+L + ++Q++ KY + V++ L +R + + ++
Sbjct: 827 TQHVLERGKPDERRQIIEKLTGN--VVQMSQHKYASNVVEKCLEHADSTEREFLIEEIMG 884
Query: 306 KLQQHLAALRVMK 318
K ++ L +MK
Sbjct: 885 KSEEDNHLLAMMK 897
>POMBASE|SPAC1687.22c [details] [associations]
symbol:puf3 "RNA-binding protein Puf3 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005741 "mitochondrial outer membrane"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0033554
"cellular response to stress" evidence=IEP] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPAC1687.22c GO:GO:0005829 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CU329670_GR GO:GO:0005741 GO:GO:0033554 GO:GO:0003729
GO:GO:0000288 eggNOG:COG5099 RefSeq:NP_593141.2 HSSP:Q14671
ProteinModelPortal:O94462 SMR:O94462 EnsemblFungi:SPAC1687.22c.1
GeneID:2542300 KEGG:spo:SPAC1687.22c OrthoDB:EOG4RR9RJ
NextBio:20803362 Uniprot:O94462
Length = 732
Score = 248 (92.4 bits), Expect = 4.6e-20, P = 4.6e-20
Identities = 85/318 (26%), Positives = 150/318 (47%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFW-VVSGFTFELMSGQYGRFVFGKFIESCNE 72
LFS DQ GS+++Q+ L++ + +F + S +LM +G +V K+ E NE
Sbjct: 403 LFST--DQHGSRFIQQKLATATEEEREAVFQEIASTSCLQLMMDIFGNYVVQKYFEFGNE 460
Query: 73 SQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMM 132
Q +++ +I + +F L S+ +G V+K I+ ++ P ++ L +
Sbjct: 461 KQKQILLSQI--KGHVFSL-SLQMYGCRVVQKAIEYIS--PEHQVQLIQELDGHVLDCVC 515
Query: 133 TKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQIL 192
+ G+ VI + +E FI +A L+ H GC + I++ S RK I+
Sbjct: 516 DQNGNHVIQKAIECIDTGHLQFILRALRPQIHVLSAHPYGCRVIQRAIEHCH-SERKLII 574
Query: 193 HLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCL 252
+ + L++ + GNYVVQH+L I + H + LS K S VV++C+
Sbjct: 575 EELLPHILKLTQDQYGNYVVQHILRTGSESDKKYIFDLMIDHLLFLSCHKFASNVVERCI 634
Query: 253 KY------QNAVHYIIEELLNSDQILQVA-NDKYGNYVIQTALAETMRQDRLSVHQRLVT 305
Y + ++ II E + IL + DKY NYVIQ L + ++R L++
Sbjct: 635 SYISDVDRRRILNKIISEKAENCSILMLMMKDKYANYVIQKLLDASPEEER----DLLIS 690
Query: 306 KLQQHLAALRVMKYGSNV 323
+ H++ L+ YG ++
Sbjct: 691 YIYPHISVLKKFTYGKHL 708
>FB|FBgn0003165 [details] [associations]
symbol:pum "pumilio" species:7227 "Drosophila melanogaster"
[GO:0005737 "cytoplasm" evidence=NAS;IDA] [GO:0048477 "oogenesis"
evidence=TAS] [GO:0007280 "pole cell migration" evidence=IMP;TAS]
[GO:0042078 "germ-line stem cell division" evidence=NAS;TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0017148
"negative regulation of translation" evidence=TAS] [GO:0007281
"germ cell development" evidence=TAS] [GO:0001709 "cell fate
determination" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] [GO:0008258 "head involution"
evidence=IMP] [GO:0007268 "synaptic transmission" evidence=IMP]
[GO:0008595 "anterior/posterior axis specification, embryo"
evidence=TAS] [GO:0007067 "mitosis" evidence=TAS] [GO:0045786
"negative regulation of cell cycle" evidence=TAS] [GO:0016477 "cell
migration" evidence=TAS] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0007616 "long-term memory"
evidence=IMP;TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0048813 "dendrite morphogenesis" evidence=IMP] [GO:0050804
"regulation of synaptic transmission" evidence=IMP] [GO:0008582
"regulation of synaptic growth at neuromuscular junction"
evidence=IDA] [GO:0048149 "behavioral response to ethanol"
evidence=IMP] [GO:0042059 "negative regulation of epidermal growth
factor receptor signaling pathway" evidence=IMP] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 EMBL:AE014297 GO:GO:0005737 GO:GO:0045892
GO:GO:0007280 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0007067 GO:GO:0008595 GO:GO:0007616 GO:GO:0048477
GO:GO:0048813 GO:GO:0003730 GO:GO:0045727 GO:GO:0042059
GO:GO:0001709 GO:GO:0045786 GO:GO:0008582 GO:GO:0000288
GO:GO:0000900 GO:GO:0008258 GO:GO:0042078 GO:GO:0050804
eggNOG:COG5099 GeneTree:ENSGT00390000017241 EMBL:X62589 EMBL:L07943
EMBL:BT001872 EMBL:BT009970 EMBL:BT021317 PIR:A46221
RefSeq:NP_524285.2 RefSeq:NP_731314.1 RefSeq:NP_731315.1
RefSeq:NP_731316.2 RefSeq:NP_788604.1 UniGene:Dm.1115 PDB:3H3D
PDBsum:3H3D ProteinModelPortal:P25822 SMR:P25822 MINT:MINT-822094
STRING:P25822 PaxDb:P25822 EnsemblMetazoa:FBtr0081990
EnsemblMetazoa:FBtr0081991 EnsemblMetazoa:FBtr0081992
EnsemblMetazoa:FBtr0333667 GeneID:41094 KEGG:dme:Dmel_CG9755
UCSC:CG9755-RA CTD:41094 FlyBase:FBgn0003165 InParanoid:P25822
OMA:LASPTIC OrthoDB:EOG4HMGRT PhylomeDB:P25822
EvolutionaryTrace:P25822 GenomeRNAi:41094 NextBio:822132
Bgee:P25822 GermOnline:CG9755 Uniprot:P25822
Length = 1533
Score = 250 (93.1 bits), Expect = 8.5e-20, P = 8.5e-20
Identities = 82/321 (25%), Positives = 152/321 (47%)
Query: 11 NHDLFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESC 70
NH + +QDQ GS+++Q+ L + +F + + LM+ +G +V KF E
Sbjct: 1114 NH-IVEFSQDQHGSRFIQQKLERATAAEKQMVFSEILAAAYSLMTDVFGNYVIQKFFEFG 1172
Query: 71 NESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFL 130
Q + +++ + + LA + +G ++K ++ ++ P ++ L
Sbjct: 1173 TPEQKNTLGMQV--KGHVLQLA-LQMYGCRVIQKALESIS--PEQQQEIVHELDGHVLKC 1227
Query: 131 MMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQ 190
+ + G+ V+ +C+E FI A L+ H GC + +++ +
Sbjct: 1228 VKDQNGNHVVQKCIECVDPVALQFIINAFKGQVYSLSTHPYGCRVIQRILEHCTAEQTTP 1287
Query: 191 ILHLISVNAASLSRHRSGNYVVQHVLS---LEDP-FLIDAICFALRGHYVDLSLTKCGSF 246
IL + + L + + GNYV+QHVL ED LI+++ RG + LS K S
Sbjct: 1288 ILDELHEHTEQLIQDQYGNYVIQHVLEHGKQEDKSILINSV----RGKVLVLSQHKFASN 1343
Query: 247 VVQKCLKYQNAVHY--IIEELLN-SDQILQVA-NDKYGNYVIQTALAETMRQDRLSVHQR 302
VV+KC+ + +I+E+ +D L V D+Y NYV+Q + + +L ++
Sbjct: 1344 VVEKCVTHATRGERTGLIDEVCTFNDNALHVMMKDQYANYVVQKMI-DVSEPTQL---KK 1399
Query: 303 LVTKLQQHLAALRVMKYGSNV 323
L+TK++ H+AALR YG ++
Sbjct: 1400 LMTKIRPHMAALRKYTYGKHI 1420
>TAIR|locus:2043182 [details] [associations]
symbol:PUM1 "pumilio 1" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003729 EMBL:AC004561 eggNOG:COG5099 HSSP:Q14671
IPI:IPI00536716 PIR:F84693 RefSeq:NP_180483.1 UniGene:At.38509
ProteinModelPortal:Q9ZW07 SMR:Q9ZW07 STRING:Q9ZW07 PaxDb:Q9ZW07
PRIDE:Q9ZW07 EnsemblPlants:AT2G29200.1 GeneID:817469
KEGG:ath:AT2G29200 TAIR:At2g29200 HOGENOM:HOG000238460
InParanoid:Q9ZW07 OMA:DQAHKAT PhylomeDB:Q9ZW07
ProtClustDB:CLSN2717398 Genevestigator:Q9ZW07 InterPro:IPR012940
Pfam:PF07990 Uniprot:Q9ZW07
Length = 968
Score = 245 (91.3 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 85/331 (25%), Positives = 153/331 (46%)
Query: 2 QTIAFE--HCTNHDLFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYG 59
+T FE H + + DQ GS+++Q+ L + + + ++ + LM+ +G
Sbjct: 622 KTRGFELSEIAGH-VVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPQALVLMTDVFG 680
Query: 60 RFVFGKFIESCNESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHV 119
+V KF E Q + K+ F L L S+ +G ++K I+VV L + V
Sbjct: 681 NYVIQKFFEHGLPPQRRELAEKL-FDHVLPL--SLQMYGCRVIQKAIEVV-DLDQKIKMV 736
Query: 120 MSALKRLFKFLMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNF 179
+ + + + G+ V+ +C+E +FI H + L+ H GC +
Sbjct: 737 KELDGHVMR-CVRDQNGNHVVQKCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQRV 795
Query: 180 IDNMKG-SRRKQILHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDL 238
+++ + +++ I + L++ + GNYVVQHVL P I L G V +
Sbjct: 796 LEHCHDPDTQSKVMEEILSTVSMLAQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQM 855
Query: 239 SLTKCGSFVVQKCLKYQNAVH--YIIEELLNS---DQILQ-VANDKYGNYVIQTALAETM 292
S K S VV+KCL + ++ E+L + ++ LQ + D++ NYV+Q L
Sbjct: 856 SQQKFASNVVEKCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCD 915
Query: 293 RQDRLSVHQRLVTKLQQHLAALRVMKYGSNV 323
Q R + ++T+++ HL AL+ YG +V
Sbjct: 916 DQQR----ELILTRIKVHLTALKKYTYGKHV 942
>TAIR|locus:2043047 [details] [associations]
symbol:PUM3 "pumilio 3" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005886 GO:GO:0005737
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AC004561 eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460
ProtClustDB:CLSN2717398 InterPro:IPR012940 Pfam:PF07990
IPI:IPI00542656 PIR:A84693 RefSeq:NP_180478.1 UniGene:At.46280
ProteinModelPortal:Q9ZW02 SMR:Q9ZW02 PaxDb:Q9ZW02 PRIDE:Q9ZW02
EnsemblPlants:AT2G29140.1 GeneID:817463 KEGG:ath:AT2G29140
TAIR:At2g29140 InParanoid:Q9ZW02 OMA:MYENASA PhylomeDB:Q9ZW02
Genevestigator:Q9ZW02 Uniprot:Q9ZW02
Length = 964
Score = 242 (90.2 bits), Expect = 1.9e-18, P = 1.9e-18
Identities = 83/331 (25%), Positives = 153/331 (46%)
Query: 2 QTIAFE--HCTNHDLFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYG 59
+T FE H + + DQ GS+++Q+ L + + + ++ + LM+ +G
Sbjct: 618 KTRGFELSEIAGH-VVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPKALALMTDVFG 676
Query: 60 RFVFGKFIESCNESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHV 119
+V KF E Q + K+ D + L S+ +G ++K I+VV L + V
Sbjct: 677 NYVIQKFFEHGLPPQRRELGEKLI--DNVLPL-SLQMYGCRVIQKAIEVV-DLDQKIQMV 732
Query: 120 MSALKRLFKFLMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNF 179
+ + + + G+ V+ +C+E +FI H + L+ H GC +
Sbjct: 733 KELDGHVMR-CVRDQNGNHVVQKCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQRV 791
Query: 180 IDNMKG-SRRKQILHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDL 238
+++ + +++ I + L++ + GNYVVQHVL P I L G V +
Sbjct: 792 LEHCHNPDTQSKVMEEILSTVSMLTQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQM 851
Query: 239 SLTKCGSFVVQKCLKYQNAVH--YIIEELLNS---DQILQ-VANDKYGNYVIQTALAETM 292
S K S VV+KCL + ++ E+L + ++ LQ + D++ NYV+Q L
Sbjct: 852 SQQKFASNVVEKCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCD 911
Query: 293 RQDRLSVHQRLVTKLQQHLAALRVMKYGSNV 323
Q R + ++T+++ HL AL+ YG ++
Sbjct: 912 DQQR----ELILTRIKVHLNALKKYTYGKHI 938
>TAIR|locus:2076324 [details] [associations]
symbol:PUM4 "pumilio 4" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729 EMBL:AC009400
eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460 InterPro:IPR012940
Pfam:PF07990 EMBL:AK117911 EMBL:BT005311 IPI:IPI00525853
RefSeq:NP_187647.2 UniGene:At.27627 UniGene:At.48643
ProteinModelPortal:Q9SS47 SMR:Q9SS47 PaxDb:Q9SS47 PRIDE:Q9SS47
EnsemblPlants:AT3G10360.1 GeneID:820198 KEGG:ath:AT3G10360
TAIR:At3g10360 InParanoid:Q9SS47 OMA:FKNNKTR PhylomeDB:Q9SS47
Genevestigator:Q9SS47 Uniprot:Q9SS47
Length = 1003
Score = 242 (90.2 bits), Expect = 2.0e-18, P = 2.0e-18
Identities = 80/329 (24%), Positives = 153/329 (46%)
Query: 2 QTIAFEHCTNHDLFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRF 61
+++ H + + DQ GS+++Q+ L + + +F + + LM+ +G +
Sbjct: 658 RSLELSEIVGH-VIEFSMDQYGSRFIQQKLETATDEEKNAIFPEILPYGRTLMTDVFGNY 716
Query: 62 VFGKFIESCNESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMS 121
V KF E Q + ++T L S+ +G ++K ++VV L V
Sbjct: 717 VIQKFFEHGTTKQRKELAEQVTGH---VLALSLQMYGCRVIQKALEVV-ELEQQARMVKE 772
Query: 122 ALKRLFKFLMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFID 181
+ K + + G+ VI +C+E FI + L L+ H GC + ++
Sbjct: 773 LDGSVMK-CVHDQNGNHVIQKCIERLPQDWIQFIISSFYGKVLALSTHPYGCRVIQRVLE 831
Query: 182 NMKGSRRKQIL-HLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSL 240
++ ++I+ I + +L++ + GNYV+QH++ P I L G V +S
Sbjct: 832 HIDDIETQRIIMEEIMDSVCTLAQDQYGNYVIQHIIQHGKPHERSEIINKLAGQIVKMSQ 891
Query: 241 TKCGSFVVQKCLKYQNAVH--YIIEELL---NSDQILQ-VANDKYGNYVIQTALAETMRQ 294
K S VV+KCL + ++ E+L + ++ LQ + D +GNYV+Q L ET
Sbjct: 892 QKFASNVVEKCLTFGGPEERQVLVNEMLGYTDENEPLQAMMKDPFGNYVVQKVL-ETCDD 950
Query: 295 DRLSVHQRLVTKLQQHLAALRVMKYGSNV 323
L++ ++++++ HL AL+ YG ++
Sbjct: 951 QSLAL---ILSRIKVHLNALKRYTYGKHI 976
>TAIR|locus:2043187 [details] [associations]
symbol:PUM2 "pumilio 2" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS;IDA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0003729 "mRNA binding"
evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 GO:GO:0005829 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003730 EMBL:AC004561 eggNOG:COG5099 HSSP:Q14671
HOGENOM:HOG000238460 ProtClustDB:CLSN2717398 InterPro:IPR012940
Pfam:PF07990 EMBL:AY096653 EMBL:AK226635 IPI:IPI00539996 PIR:E84693
RefSeq:NP_001189630.1 RefSeq:NP_180482.1 UniGene:At.28148
UniGene:At.48528 ProteinModelPortal:Q9ZW06 SMR:Q9ZW06 STRING:Q9ZW06
PaxDb:Q9ZW06 PRIDE:Q9ZW06 ProMEX:Q9ZW06 EnsemblPlants:AT2G29190.1
EnsemblPlants:AT2G29190.2 GeneID:817468 KEGG:ath:AT2G29190
TAIR:At2g29190 InParanoid:Q9ZW06 OMA:LAANCED PhylomeDB:Q9ZW06
Genevestigator:Q9ZW06 Uniprot:Q9ZW06
Length = 972
Score = 237 (88.5 bits), Expect = 1.4e-17, P = 1.4e-17
Identities = 82/331 (24%), Positives = 154/331 (46%)
Query: 2 QTIAFE--HCTNHDLFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYG 59
+T FE H + + DQ GS+++Q+ L + S + ++ + LM+ +G
Sbjct: 626 KTRGFELAEIAGH-VVEFSSDQYGSRFIQQKLETATSDEKNMVYEEIMPHALALMTDVFG 684
Query: 60 RFVFGKFIESCNESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHV 119
+V KF E Q + K+ F + L L S+ +G ++K I+VV L + V
Sbjct: 685 NYVIQKFFEHGLPPQRRELADKL-FDNVLPL--SLQMYGCRVIQKAIEVV-DLDQKIKMV 740
Query: 120 MSALKRLFKFLMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNF 179
+ + + + G+ V+ +C+E +FI + + L+ H GC +
Sbjct: 741 KELDGHVMR-CVRDQNGNHVVQKCIECVPEENIEFIISTFFGNVVTLSTHPYGCRVIQRV 799
Query: 180 IDNMKG-SRRKQILHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDL 238
+++ + +++ I + L++ + GNYV+QHVL P I L G V +
Sbjct: 800 LEHCHDPDTQSKVMDEIMSTISMLAQDQYGNYVIQHVLEHGKPDERTVIIKELAGKIVQM 859
Query: 239 SLTKCGSFVVQKCLKYQNAVH--YIIEELLNS---DQILQ-VANDKYGNYVIQTALAETM 292
S K S VV+KCL + +++ E+L + ++ LQ + D++ NYV+Q L
Sbjct: 860 SQQKFASNVVEKCLTFGGPEEREFLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCD 919
Query: 293 RQDRLSVHQRLVTKLQQHLAALRVMKYGSNV 323
Q R + ++ +++ HL AL+ YG ++
Sbjct: 920 DQQR----ELILGRIKVHLNALKKYTYGKHI 946
>UNIPROTKB|Q8TB72 [details] [associations]
symbol:PUM2 "Pumilio homolog 2" species:9606 "Homo sapiens"
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 EMBL:CH471053 GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 eggNOG:COG5099 HOGENOM:HOG000238461
HOVERGEN:HBG049462 EMBL:AF315591 EMBL:D87078 EMBL:AC007041
EMBL:AK093847 EMBL:BC024218 EMBL:BC112046 EMBL:BC112048
EMBL:AF272350 IPI:IPI00022184 IPI:IPI00398749 IPI:IPI00398750
RefSeq:NP_056132.1 UniGene:Hs.467824 PDB:3Q0Q PDB:3Q0R PDB:3Q0S
PDBsum:3Q0Q PDBsum:3Q0R PDBsum:3Q0S ProteinModelPortal:Q8TB72
SMR:Q8TB72 IntAct:Q8TB72 MINT:MINT-254513 STRING:Q8TB72
PhosphoSite:Q8TB72 DMDM:41688714 PaxDb:Q8TB72 PRIDE:Q8TB72
Ensembl:ENST00000319801 Ensembl:ENST00000338086
Ensembl:ENST00000361078 Ensembl:ENST00000403432
Ensembl:ENST00000440577 GeneID:23369 KEGG:hsa:23369 UCSC:uc002rds.1
CTD:23369 GeneCards:GC02M020448 HGNC:HGNC:14958 HPA:HPA030316
MIM:607205 neXtProt:NX_Q8TB72 PharmGKB:PA34043 InParanoid:Q8TB72
OMA:HITSIPR PhylomeDB:Q8TB72 ChiTaRS:PUM2 EvolutionaryTrace:Q8TB72
GenomeRNAi:23369 NextBio:45440 ArrayExpress:Q8TB72 Bgee:Q8TB72
CleanEx:HS_PUM2 Genevestigator:Q8TB72 GermOnline:ENSG00000055917
Uniprot:Q8TB72
Length = 1066
Score = 235 (87.8 bits), Expect = 3.3e-17, P = 3.3e-17
Identities = 75/319 (23%), Positives = 145/319 (45%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
+ +QDQ GS+++Q+ L +F + ++LM+ +G +V KF E +
Sbjct: 731 IVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLD 790
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMT 133
Q + +I + + LA + +G ++K ++ ++ ++ ++ L +
Sbjct: 791 QKLALATRI--RGHVLPLA-LQMYGCRVIQKALESISSDQQVISEMVKELDGHVLKCVKD 847
Query: 134 KPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILH 193
+ G+ V+ +C+E FI A L+ H GC + +++ + IL
Sbjct: 848 QNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILE 907
Query: 194 LISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLK 253
+ + L + + GNYV+QHVL P I +RG + LS K S VV+KC+
Sbjct: 908 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVT 967
Query: 254 YQNAVH--YIIEELL-NSD----QILQVANDKYGNYVIQTAL--AETMRQDRLSVHQRLV 304
+ + +I+E+ +D + + D+Y NYV+Q + AE Q ++ +H
Sbjct: 968 HASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPA-QRKIIMH---- 1022
Query: 305 TKLQQHLAALRVMKYGSNV 323
K++ H+ LR YG ++
Sbjct: 1023 -KIRPHITTLRKYTYGKHI 1040
>RGD|1311024 [details] [associations]
symbol:Pum2 "pumilio homolog 2 (Drosophila)" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0034063 "stress granule assembly"
evidence=ISO] [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISO] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 RGD:1311024
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
IPI:IPI00950922 Ensembl:ENSRNOT00000064843 ArrayExpress:D4A0R8
Uniprot:D4A0R8
Length = 904
Score = 233 (87.1 bits), Expect = 5.0e-17, P = 5.0e-17
Identities = 75/319 (23%), Positives = 145/319 (45%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
+ +QDQ GS+++Q+ L +F + ++LM+ +G +V KF E +
Sbjct: 569 IVEFSQDQHGSRFIQQKLERATPAERQMVFNEIVQAAYQLMTDVFGNYVIQKFFEFGSLD 628
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMT 133
Q + +I + + LA + +G ++K ++ ++ ++ ++ L +
Sbjct: 629 QKLALANRI--RGHVLPLA-LQMYGCRVIQKALESISSDQQVISEMVKELDGHVLKCVKD 685
Query: 134 KPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILH 193
+ G+ V+ +C+E FI A L+ H GC + +++ + IL
Sbjct: 686 QNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILE 745
Query: 194 LISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLK 253
+ + L + + GNYV+QHVL P I +RG + LS K S VV+KC+
Sbjct: 746 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVT 805
Query: 254 YQNAVH--YIIEELL-NSD----QILQVANDKYGNYVIQTAL--AETMRQDRLSVHQRLV 304
+ + +I+E+ +D + + D+Y NYV+Q + AE Q ++ +H
Sbjct: 806 HASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPA-QRKIIMH---- 860
Query: 305 TKLQQHLAALRVMKYGSNV 323
K++ H+ LR YG ++
Sbjct: 861 -KIRPHITTLRKYTYGKHI 878
>MGI|MGI:1931751 [details] [associations]
symbol:Pum2 "pumilio 2 (Drosophila)" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0030425
"dendrite" evidence=ISO] [GO:0034063 "stress granule assembly"
evidence=ISO;IDA] [GO:0043025 "neuronal cell body" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 MGI:MGI:1931751 GO:GO:0048471
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0043025 GO:GO:0030425 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 eggNOG:COG5099 GeneTree:ENSGT00390000017241
HOGENOM:HOG000238461 HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP CTD:23369
ChiTaRS:PUM2 EMBL:AY027917 EMBL:AF315590 EMBL:AK122225
EMBL:BC013765 EMBL:BC041773 IPI:IPI00112203 IPI:IPI00400191
IPI:IPI00400192 RefSeq:NP_001153691.1 RefSeq:NP_001153694.1
RefSeq:NP_109648.2 UniGene:Mm.341243 PDB:3GVO PDB:3GVT PDBsum:3GVO
PDBsum:3GVT ProteinModelPortal:Q80U58 SMR:Q80U58 IntAct:Q80U58
STRING:Q80U58 PhosphoSite:Q80U58 PaxDb:Q80U58 PRIDE:Q80U58
Ensembl:ENSMUST00000163569 Ensembl:ENSMUST00000168361
Ensembl:ENSMUST00000169089 Ensembl:ENSMUST00000178015 GeneID:80913
KEGG:mmu:80913 UCSC:uc007mzw.2 UCSC:uc007mzy.2 UCSC:uc007naa.2
InParanoid:Q80U58 OMA:LFDYSSQ EvolutionaryTrace:Q80U58
NextBio:350290 Bgee:Q80U58 CleanEx:MM_PUM2 Genevestigator:Q80U58
GermOnline:ENSMUSG00000020594 Uniprot:Q80U58
Length = 1066
Score = 233 (87.1 bits), Expect = 6.4e-17, P = 6.4e-17
Identities = 75/319 (23%), Positives = 145/319 (45%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
+ +QDQ GS+++Q+ L +F + ++LM+ +G +V KF E +
Sbjct: 731 IVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLD 790
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMT 133
Q + +I + + LA + +G ++K ++ ++ ++ ++ L +
Sbjct: 791 QKLALATRI--RGHVLPLA-LQMYGCRVIQKALESISSDQQVISEMVKELDGHVLKCVKD 847
Query: 134 KPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILH 193
+ G+ V+ +C+E FI A L+ H GC + +++ + IL
Sbjct: 848 QNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILE 907
Query: 194 LISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLK 253
+ + L + + GNYV+QHVL P I +RG + LS K S VV+KC+
Sbjct: 908 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVT 967
Query: 254 YQNAVH--YIIEELL-NSD----QILQVANDKYGNYVIQTAL--AETMRQDRLSVHQRLV 304
+ + +I+E+ +D + + D+Y NYV+Q + AE Q ++ +H
Sbjct: 968 HASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPA-QRKIIMH---- 1022
Query: 305 TKLQQHLAALRVMKYGSNV 323
K++ H+ LR YG ++
Sbjct: 1023 -KIRPHITTLRKYTYGKHI 1040
>DICTYBASE|DDB_G0279735 [details] [associations]
symbol:pufA "RNA binding protein" species:44689
"Dictyostelium discoideum" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 dictyBase:DDB_G0279735
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CM000152_GR GO:GO:0003723 EMBL:AAFI02000032
OMA:FNDSANG RefSeq:XP_641551.1 EnsemblProtists:DDB0233053
GeneID:8622225 KEGG:ddi:DDB_G0279735 InParanoid:Q54WA7
ProtClustDB:CLSZ2846814 Uniprot:Q54WA7
Length = 785
Score = 231 (86.4 bits), Expect = 7.3e-17, P = 7.3e-17
Identities = 81/317 (25%), Positives = 144/317 (45%)
Query: 18 AQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLAL 77
++DQ GS+ +Q+ + + +F V LM+ +G +V KF E Q +
Sbjct: 468 SKDQVGSRIIQQKIENASLEEKQLVFDEVVVAVHSLMTDVFGNYVLQKFFEHGTTEQKRI 527
Query: 78 IILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMTKPGS 137
+ K++ L ++ +G ++K I+ + +L ++ L + + G+
Sbjct: 528 LADKLSGH---ILSLTLQMYGCRVIQKAIESIELDKQIL--LIGELNGHIVQCVTDQNGN 582
Query: 138 SVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISV 197
VI +C+E H FI + H LA H GC + +++ + IL +
Sbjct: 583 HVIQKCIEKIPTHLIQFIIDSFHGHIYQLATHPYGCRVIQRILEHCAEKQVAPILDELMR 642
Query: 198 NAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLKYQNA 257
A SL + + GNYV+QHVL P AI L+G +LS K S V++KC+++
Sbjct: 643 CAVSLVQDQYGNYVIQHVLENGTPRDKSAIVCKLQGQIYNLSQHKFASNVIEKCVQHGCT 702
Query: 258 VH--YIIEELL-------NSDQILQVANDKYGNYVIQTALAETMRQDRLSVHQR--LVTK 306
II E+L +S+ +L++ D Y NYVIQ L D + QR ++ +
Sbjct: 703 AERILIINEILGDANSPNSSNVLLKILKDPYANYVIQKIL------DIVEPAQRDMIINR 756
Query: 307 LQQHLAALRVMKYGSNV 323
+Q + L+ + G ++
Sbjct: 757 IQPFVPTLKKVTPGKHI 773
>MGI|MGI:1931749 [details] [associations]
symbol:Pum1 "pumilio 1 (Drosophila)" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 MGI:MGI:1931749
GO:GO:0005737 GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 eggNOG:COG5099
GeneTree:ENSGT00390000017241 CTD:9698 HOGENOM:HOG000238461
HOVERGEN:HBG049462 OMA:RHVVGVK OrthoDB:EOG4P8FHP ChiTaRS:PUM1
EMBL:AF321909 EMBL:AK122205 EMBL:AK052145 EMBL:BC048174
EMBL:BC050747 IPI:IPI00330262 IPI:IPI00400349 IPI:IPI00400350
IPI:IPI00400351 RefSeq:NP_001153075.1 RefSeq:NP_001153076.1
RefSeq:NP_001153077.1 RefSeq:NP_001153078.1 RefSeq:NP_109647.2
UniGene:Mm.440206 ProteinModelPortal:Q80U78 SMR:Q80U78
IntAct:Q80U78 STRING:Q80U78 PhosphoSite:Q80U78 PaxDb:Q80U78
PRIDE:Q80U78 Ensembl:ENSMUST00000030315 Ensembl:ENSMUST00000097862
Ensembl:ENSMUST00000097864 GeneID:80912 KEGG:mmu:80912
UCSC:uc008uzl.2 InParanoid:Q80U78 NextBio:350286 Bgee:Q80U78
CleanEx:MM_PUM1 Genevestigator:Q80U78 Uniprot:Q80U78
Length = 1189
Score = 232 (86.7 bits), Expect = 1.0e-16, P = 1.0e-16
Identities = 79/320 (24%), Positives = 148/320 (46%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIE-SCNE 72
+ +QDQ GS+++Q L + +F + ++LM +G +V KF E +E
Sbjct: 854 IMEFSQDQHGSRFIQLKLERATAAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSHE 913
Query: 73 SQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMM 132
+LAL +I + + LA + +G ++K ++ + ++ ++ L +
Sbjct: 914 QKLALAE-RI--RGHVLSLA-LQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVK 969
Query: 133 TKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQIL 192
+ G+ V+ +C+E FI A L+ H GC + +++ + IL
Sbjct: 970 DQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPIL 1029
Query: 193 HLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCL 252
+ + L + + GNYV+QHVL P I +RG+ + LS K S VV+KC+
Sbjct: 1030 EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCV 1089
Query: 253 KYQNAVH--YIIEEL--LNS---DQILQVANDKYGNYVIQTAL--AETMRQDRLSVHQRL 303
+ + +I+E+ +N + + D+Y NYV+Q + AE Q ++ +H
Sbjct: 1090 THASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEP-GQRKIVMH--- 1145
Query: 304 VTKLQQHLAALRVMKYGSNV 323
K++ H+A LR YG ++
Sbjct: 1146 --KIRPHIATLRKYTYGKHI 1163
Score = 119 (46.9 bits), Expect = 0.00096, P = 0.00096
Identities = 57/264 (21%), Positives = 110/264 (41%)
Query: 2 QTIAF-EHCTNHDLFSLAQDQEGSQYLQENLS--SGDSRILDKLFWVVSGFTFELMSGQY 58
Q +A E H L SLA G + +Q+ L D ++++++ + G + + Q
Sbjct: 914 QKLALAERIRGHVL-SLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQN 972
Query: 59 GRFVFGKFIESCNESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAH-LPPLLY 117
G V K IE L II F+ Q+F L S +G ++++++ H LP
Sbjct: 973 GNHVVQKCIECVQPQSLQFII--DAFKGQVFAL-STHPYGCRVIQRILE---HCLPDQTL 1026
Query: 118 HVMSALKRLFKFLMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLN 177
++ L + + L+ + G+ VI LE I + L L+ H+ +
Sbjct: 1027 PILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 1086
Query: 178 NFIDNMKGSRRKQIL-HLISVNAA------SLSRHRSGNYVVQHVLSLEDPFLIDAICFA 230
+ + + R ++ + ++N ++ + + NYVVQ ++ + +P +
Sbjct: 1087 KCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHK 1146
Query: 231 LRGHYVDLSLTKCGSFVVQKCLKY 254
+R H L G ++ K KY
Sbjct: 1147 IRPHIATLRKYTYGKHILAKLEKY 1170
>UNIPROTKB|F1NV23 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 EMBL:AADN02018552
EMBL:AADN02018553 EMBL:AADN02018554 EMBL:AADN02018555
IPI:IPI00735100 Ensembl:ENSGALT00000026590 Uniprot:F1NV23
Length = 1061
Score = 230 (86.0 bits), Expect = 1.6e-16, P = 1.6e-16
Identities = 76/319 (23%), Positives = 144/319 (45%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
+ +QDQ GS+++Q+ L +F + ++LM+ +G +V KF E +
Sbjct: 728 IVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLD 787
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMT 133
Q + +I + + LA + +G ++K ++ ++ P ++ L +
Sbjct: 788 QKLALATRI--RGHVLPLA-LQMYGCRVIQKALESIS--PDQQNEMVKELDGHVLKCVKD 842
Query: 134 KPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILH 193
+ G+ V+ +C+E FI A L+ H GC + +++ + IL
Sbjct: 843 QNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILE 902
Query: 194 LISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLK 253
+ + L + + GNYV+QHVL P I +RG + LS K S VV+KC+
Sbjct: 903 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVT 962
Query: 254 YQNAVH--YIIEELL-NSD----QILQVANDKYGNYVIQTAL--AETMRQDRLSVHQRLV 304
+ + +I+E+ +D + + D+Y NYV+Q + AE Q ++ +H
Sbjct: 963 HASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPA-QRKIIMH---- 1017
Query: 305 TKLQQHLAALRVMKYGSNV 323
K++ H+ LR YG ++
Sbjct: 1018 -KIRPHITTLRKYTYGKHI 1035
>UNIPROTKB|E1BWC0 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0034063 "stress
granule assembly" evidence=IEA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 OMA:LFDYSSQ EMBL:AADN02018552
EMBL:AADN02018553 EMBL:AADN02018554 EMBL:AADN02018555
IPI:IPI00682927 Ensembl:ENSGALT00000026591 Uniprot:E1BWC0
Length = 1062
Score = 230 (86.0 bits), Expect = 1.6e-16, P = 1.6e-16
Identities = 76/319 (23%), Positives = 144/319 (45%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
+ +QDQ GS+++Q+ L +F + ++LM+ +G +V KF E +
Sbjct: 729 IVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLD 788
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMT 133
Q + +I + + LA + +G ++K ++ ++ P ++ L +
Sbjct: 789 QKLALATRI--RGHVLPLA-LQMYGCRVIQKALESIS--PDQQNEMVKELDGHVLKCVKD 843
Query: 134 KPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILH 193
+ G+ V+ +C+E FI A L+ H GC + +++ + IL
Sbjct: 844 QNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILE 903
Query: 194 LISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLK 253
+ + L + + GNYV+QHVL P I +RG + LS K S VV+KC+
Sbjct: 904 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVT 963
Query: 254 YQNAVH--YIIEELL-NSD----QILQVANDKYGNYVIQTAL--AETMRQDRLSVHQRLV 304
+ + +I+E+ +D + + D+Y NYV+Q + AE Q ++ +H
Sbjct: 964 HASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPA-QRKIIMH---- 1018
Query: 305 TKLQQHLAALRVMKYGSNV 323
K++ H+ LR YG ++
Sbjct: 1019 -KIRPHITTLRKYTYGKHI 1036
>CGD|CAL0004399 [details] [associations]
symbol:orf19.5381 species:5476 "Candida albicans" [GO:0003729
"mRNA binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] [GO:0001308 "negative
regulation of chromatin silencing involved in replicative cell
aging" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
CGD:CAL0004399 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AACQ01000050 RefSeq:XP_717758.1
ProteinModelPortal:Q5A835 GeneID:3640530 KEGG:cal:CaO19.5381
Uniprot:Q5A835
Length = 783
Score = 228 (85.3 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 83/303 (27%), Positives = 141/303 (46%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCN-E 72
+ +L +DQ G ++LQ L + + L +F + ELM +G ++ K N E
Sbjct: 448 ILTLCKDQHGCRFLQRELINETNATL--IFNEIYFKAVELMIDPFGNYLIQKLFTMINLE 505
Query: 73 SQLALI------ILKITFQDQ--LFLLASVDKFGSSSVKKLI--KVVAHLPPLLY----- 117
+L LI + +I L +D ++ ++I + +++ L
Sbjct: 506 QRLVLINQCSNELFRIALDPHGTRSLQKLIDVIETNEEIEIITRNLYSNIVVLSRDLNGN 565
Query: 118 HVMSALKRLFKFLMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLN 177
HV+ K L KF ++ +S + ++N FI+ + LY+ACH GC L
Sbjct: 566 HVVQ--KILTKFNTISSDSNSSDSNRDGAQHQNQNQFIFDIIQANLLYIACHRHGCCVLQ 623
Query: 178 NFIDNMKGSRRKQILHLISVNAASLSRHRSGNYVVQHVLSL---------EDPFLIDAIC 228
+D + +Q+ I+ + LS GNYVVQ+VL+ D +ID I
Sbjct: 624 RCLDYGNKQQCQQLSQEIAKHTIKLSLDPYGNYVVQYVLNKYSVGGDAQNTDNQVIDIII 683
Query: 229 FALRGHYVDLSLTKCGSFVVQKCLKYQNAVHYIIEELLNSDQ---ILQVANDKYGNYVIQ 285
++ +++ LSL K GS V++KCLK + +I+ L+ D Q+ ND +GNYV+Q
Sbjct: 684 QEIKSNFIQLSLHKFGSNVIEKCLKISSISKDLIDNLIVLDHGQAFNQLLNDPFGNYVLQ 743
Query: 286 TAL 288
T+L
Sbjct: 744 TSL 746
>WB|WBGene00004244 [details] [associations]
symbol:puf-8 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0007276 "gamete
generation" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0040022 "feminization of hermaphroditic
germ-line" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0007140 "male meiosis" evidence=IMP] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] [GO:0043186 "P granule" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0007283 GO:GO:0003723
GO:GO:0042127 GO:GO:0007140 GO:GO:0040027 GO:GO:0040020
GO:GO:0040022 GO:GO:0043186 eggNOG:COG5099
GeneTree:ENSGT00680000100664 EMBL:FO080733 PIR:T15717
RefSeq:NP_495523.3 ProteinModelPortal:Q09487 SMR:Q09487
DIP:DIP-27165N MINT:MINT-1110716 STRING:Q09487 PaxDb:Q09487
EnsemblMetazoa:C30G12.7 GeneID:174197 KEGG:cel:CELE_C30G12.7
UCSC:C30G12.7 CTD:174197 WormBase:C30G12.7 InParanoid:Q09487
OMA:KDSIFDE NextBio:882961 Uniprot:Q09487
Length = 535
Score = 224 (83.9 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 78/325 (24%), Positives = 152/325 (46%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRI-LDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNE 72
L A+DQ GS+++Q+ L+S R D +F V EL+ +G +V KF E E
Sbjct: 199 LLKFAKDQVGSRFIQQELASSKDRFEKDSIFDEVVSNADELVDDIFGNYVVQKFFEYGEE 258
Query: 73 SQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMM 132
A ++ I D++ A + ++K ++ + PL ++S ++ + M
Sbjct: 259 RHWARLVDAII--DRVPEYA-FQMYACRVLQKALEKINE--PLQIKILSQIRHVIHRCMK 313
Query: 133 TKPGSSVILQCLEPSYNHKNDFIYQAALE--HCLY-LACHEQGCINLNNFIDNMKGSRRK 189
+ G+ V+ + +E FI LE + +Y ++ GC + +++ S+ K
Sbjct: 314 DQNGNHVVQKAIEKVSPQYVQFIVDTLLESSNTIYEMSVDPYGCRVVQRCLEHCSPSQTK 373
Query: 190 QILHLISVNAASLSRHRSGNYVVQHVL---SLEDPFLIDAICFALRGHYVDLSLTKCGSF 246
++ I ++ ++ GNYVVQHV+ S ED +I + + + + K S
Sbjct: 374 PVIGQIHKRFDEIANNQYGNYVVQHVIEHGSEEDRMVIVT---RVSNNLFEFATHKYSSN 430
Query: 247 VVQKCLKYQNAVHY---IIEELLNSDQ-----ILQVANDKYGNYVIQTALAETMRQDRLS 298
V++KCL+ Q AV++ I+ + + ++Q+ D+Y NYV+Q + + R
Sbjct: 431 VIEKCLE-QGAVYHKSMIVGAACHHQEGSVPIVVQMMKDQYANYVVQKMFDQVTSEQR-- 487
Query: 299 VHQRLVTKLQQHLAALRVMKYGSNV 323
+ L+ ++ H+ LR +G ++
Sbjct: 488 --RELILTVRPHIPVLRQFPHGKHI 510
>UNIPROTKB|H0YDK8 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000498419 Uniprot:H0YDK8
Length = 900
Score = 226 (84.6 bits), Expect = 4.1e-16, P = 4.1e-16
Identities = 76/319 (23%), Positives = 144/319 (45%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
+ +QDQ GS+++Q L +F + ++LM +G +V KF E +
Sbjct: 565 IMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLE 624
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMT 133
Q + +I + + LA + +G ++K ++ + ++ ++ L +
Sbjct: 625 QKLALAERI--RGHVLSLA-LQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKD 681
Query: 134 KPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILH 193
+ G+ V+ +C+E FI A L+ H GC + +++ + IL
Sbjct: 682 QNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILE 741
Query: 194 LISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLK 253
+ + L + + GNYV+QHVL P I +RG+ + LS K S VV+KC+
Sbjct: 742 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVT 801
Query: 254 YQNAVH--YIIEEL--LNS---DQILQVANDKYGNYVIQTAL--AETMRQDRLSVHQRLV 304
+ + +I+E+ +N + + D+Y NYV+Q + AE Q ++ +H
Sbjct: 802 HASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEP-GQRKIVMH---- 856
Query: 305 TKLQQHLAALRVMKYGSNV 323
K++ H+A LR YG ++
Sbjct: 857 -KIRPHIATLRKYTYGKHI 874
Score = 119 (46.9 bits), Expect = 0.00069, P = 0.00069
Identities = 57/264 (21%), Positives = 110/264 (41%)
Query: 2 QTIAF-EHCTNHDLFSLAQDQEGSQYLQENLS--SGDSRILDKLFWVVSGFTFELMSGQY 58
Q +A E H L SLA G + +Q+ L D ++++++ + G + + Q
Sbjct: 625 QKLALAERIRGHVL-SLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQN 683
Query: 59 GRFVFGKFIESCNESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAH-LPPLLY 117
G V K IE L II F+ Q+F L S +G ++++++ H LP
Sbjct: 684 GNHVVQKCIECVQPQSLQFII--DAFKGQVFAL-STHPYGCRVIQRILE---HCLPDQTL 737
Query: 118 HVMSALKRLFKFLMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLN 177
++ L + + L+ + G+ VI LE I + L L+ H+ +
Sbjct: 738 PILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 797
Query: 178 NFIDNMKGSRRKQIL-HLISVNAA------SLSRHRSGNYVVQHVLSLEDPFLIDAICFA 230
+ + + R ++ + ++N ++ + + NYVVQ ++ + +P +
Sbjct: 798 KCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHK 857
Query: 231 LRGHYVDLSLTKCGSFVVQKCLKY 254
+R H L G ++ K KY
Sbjct: 858 IRPHIATLRKYTYGKHILAKLEKY 881
>UNIPROTKB|F6XHY4 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 GeneTree:ENSGT00390000017241
OMA:RHVVGVK Ensembl:ENSCAFT00000017823 EMBL:AAEX03001673
Uniprot:F6XHY4
Length = 1162
Score = 227 (85.0 bits), Expect = 4.5e-16, P = 4.5e-16
Identities = 76/319 (23%), Positives = 144/319 (45%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
+ +QDQ GS+++Q L +F + ++LM +G +V KF E +
Sbjct: 827 IMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLE 886
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMT 133
Q + +I + + LA + +G ++K ++ + ++ ++ L +
Sbjct: 887 QKLALAERI--RGHVLSLA-LQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKD 943
Query: 134 KPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILH 193
+ G+ V+ +C+E FI A L+ H GC + +++ + IL
Sbjct: 944 QNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILE 1003
Query: 194 LISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLK 253
+ + L + + GNYV+QHVL P I +RG+ + LS K S VV+KC+
Sbjct: 1004 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVT 1063
Query: 254 YQNAVH--YIIEEL--LNS---DQILQVANDKYGNYVIQTAL--AETMRQDRLSVHQRLV 304
+ + +I+E+ +N + + D+Y NYV+Q + AE Q ++ +H
Sbjct: 1064 HASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPA-QRKIVMH---- 1118
Query: 305 TKLQQHLAALRVMKYGSNV 323
K++ H+A LR YG ++
Sbjct: 1119 -KIRPHIATLRKYTYGKHI 1136
Score = 120 (47.3 bits), Expect = 0.00073, P = 0.00073
Identities = 57/264 (21%), Positives = 110/264 (41%)
Query: 2 QTIAF-EHCTNHDLFSLAQDQEGSQYLQENLS--SGDSRILDKLFWVVSGFTFELMSGQY 58
Q +A E H L SLA G + +Q+ L D ++++++ + G + + Q
Sbjct: 887 QKLALAERIRGHVL-SLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQN 945
Query: 59 GRFVFGKFIESCNESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAH-LPPLLY 117
G V K IE L II F+ Q+F L S +G ++++++ H LP
Sbjct: 946 GNHVVQKCIECVQPQSLQFII--DAFKGQVFAL-STHPYGCRVIQRILE---HCLPDQTL 999
Query: 118 HVMSALKRLFKFLMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLN 177
++ L + + L+ + G+ VI LE I + L L+ H+ +
Sbjct: 1000 PILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 1059
Query: 178 NFIDNMKGSRRKQIL-HLISVNAA------SLSRHRSGNYVVQHVLSLEDPFLIDAICFA 230
+ + + R ++ + ++N ++ + + NYVVQ ++ + +P +
Sbjct: 1060 KCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHK 1119
Query: 231 LRGHYVDLSLTKCGSFVVQKCLKY 254
+R H L G ++ K KY
Sbjct: 1120 IRPHIATLRKYTYGKHILAKLEKY 1143
>UNIPROTKB|E2QVA9 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 CTD:9698 RefSeq:XP_852168.1
Ensembl:ENSCAFT00000017823 GeneID:478158 KEGG:cfa:478158
NextBio:20853526 Uniprot:E2QVA9
Length = 1224
Score = 227 (85.0 bits), Expect = 4.8e-16, P = 4.8e-16
Identities = 76/319 (23%), Positives = 144/319 (45%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
+ +QDQ GS+++Q L +F + ++LM +G +V KF E +
Sbjct: 889 IMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLE 948
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMT 133
Q + +I + + LA + +G ++K ++ + ++ ++ L +
Sbjct: 949 QKLALAERI--RGHVLSLA-LQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKD 1005
Query: 134 KPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILH 193
+ G+ V+ +C+E FI A L+ H GC + +++ + IL
Sbjct: 1006 QNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILE 1065
Query: 194 LISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLK 253
+ + L + + GNYV+QHVL P I +RG+ + LS K S VV+KC+
Sbjct: 1066 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVT 1125
Query: 254 YQNAVH--YIIEEL--LNS---DQILQVANDKYGNYVIQTAL--AETMRQDRLSVHQRLV 304
+ + +I+E+ +N + + D+Y NYV+Q + AE Q ++ +H
Sbjct: 1126 HASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPA-QRKIVMH---- 1180
Query: 305 TKLQQHLAALRVMKYGSNV 323
K++ H+A LR YG ++
Sbjct: 1181 -KIRPHIATLRKYTYGKHI 1198
Score = 120 (47.3 bits), Expect = 0.00078, P = 0.00078
Identities = 57/264 (21%), Positives = 110/264 (41%)
Query: 2 QTIAF-EHCTNHDLFSLAQDQEGSQYLQENLS--SGDSRILDKLFWVVSGFTFELMSGQY 58
Q +A E H L SLA G + +Q+ L D ++++++ + G + + Q
Sbjct: 949 QKLALAERIRGHVL-SLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQN 1007
Query: 59 GRFVFGKFIESCNESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAH-LPPLLY 117
G V K IE L II F+ Q+F L S +G ++++++ H LP
Sbjct: 1008 GNHVVQKCIECVQPQSLQFII--DAFKGQVFAL-STHPYGCRVIQRILE---HCLPDQTL 1061
Query: 118 HVMSALKRLFKFLMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLN 177
++ L + + L+ + G+ VI LE I + L L+ H+ +
Sbjct: 1062 PILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 1121
Query: 178 NFIDNMKGSRRKQIL-HLISVNAA------SLSRHRSGNYVVQHVLSLEDPFLIDAICFA 230
+ + + R ++ + ++N ++ + + NYVVQ ++ + +P +
Sbjct: 1122 KCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHK 1181
Query: 231 LRGHYVDLSLTKCGSFVVQKCLKY 254
+R H L G ++ K KY
Sbjct: 1182 IRPHIATLRKYTYGKHILAKLEKY 1205
>UNIPROTKB|E7EWT3 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 IPI:IPI00939543 ProteinModelPortal:E7EWT3 SMR:E7EWT3
Ensembl:ENST00000423018 UCSC:uc010oga.1 ArrayExpress:E7EWT3
Bgee:E7EWT3 Uniprot:E7EWT3
Length = 1044
Score = 226 (84.6 bits), Expect = 5.1e-16, P = 5.1e-16
Identities = 76/319 (23%), Positives = 144/319 (45%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
+ +QDQ GS+++Q L +F + ++LM +G +V KF E +
Sbjct: 709 IMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLE 768
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMT 133
Q + +I + + LA + +G ++K ++ + ++ ++ L +
Sbjct: 769 QKLALAERI--RGHVLSLA-LQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKD 825
Query: 134 KPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILH 193
+ G+ V+ +C+E FI A L+ H GC + +++ + IL
Sbjct: 826 QNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILE 885
Query: 194 LISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLK 253
+ + L + + GNYV+QHVL P I +RG+ + LS K S VV+KC+
Sbjct: 886 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVT 945
Query: 254 YQNAVH--YIIEEL--LNS---DQILQVANDKYGNYVIQTAL--AETMRQDRLSVHQRLV 304
+ + +I+E+ +N + + D+Y NYV+Q + AE Q ++ +H
Sbjct: 946 HASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEP-GQRKIVMH---- 1000
Query: 305 TKLQQHLAALRVMKYGSNV 323
K++ H+A LR YG ++
Sbjct: 1001 -KIRPHIATLRKYTYGKHI 1018
Score = 119 (46.9 bits), Expect = 0.00083, P = 0.00083
Identities = 57/264 (21%), Positives = 110/264 (41%)
Query: 2 QTIAF-EHCTNHDLFSLAQDQEGSQYLQENLS--SGDSRILDKLFWVVSGFTFELMSGQY 58
Q +A E H L SLA G + +Q+ L D ++++++ + G + + Q
Sbjct: 769 QKLALAERIRGHVL-SLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQN 827
Query: 59 GRFVFGKFIESCNESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAH-LPPLLY 117
G V K IE L II F+ Q+F L S +G ++++++ H LP
Sbjct: 828 GNHVVQKCIECVQPQSLQFII--DAFKGQVFAL-STHPYGCRVIQRILE---HCLPDQTL 881
Query: 118 HVMSALKRLFKFLMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLN 177
++ L + + L+ + G+ VI LE I + L L+ H+ +
Sbjct: 882 PILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 941
Query: 178 NFIDNMKGSRRKQIL-HLISVNAA------SLSRHRSGNYVVQHVLSLEDPFLIDAICFA 230
+ + + R ++ + ++N ++ + + NYVVQ ++ + +P +
Sbjct: 942 KCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHK 1001
Query: 231 LRGHYVDLSLTKCGSFVVQKCLKY 254
+R H L G ++ K KY
Sbjct: 1002 IRPHIATLRKYTYGKHILAKLEKY 1025
>UNIPROTKB|E9PCJ0 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 CTD:9698 EMBL:AL356320 EMBL:AL445235
RefSeq:NP_001018494.1 UniGene:Hs.281707 DNASU:9698 GeneID:9698
KEGG:hsa:9698 HGNC:HGNC:14957 ChiTaRS:PUM1 GenomeRNAi:9698
NextBio:36439 IPI:IPI00941275 ProteinModelPortal:E9PCJ0 SMR:E9PCJ0
Ensembl:ENST00000426105 UCSC:uc001bsh.1 ArrayExpress:E9PCJ0
Bgee:E9PCJ0 Uniprot:E9PCJ0
Length = 1188
Score = 226 (84.6 bits), Expect = 6.1e-16, P = 6.1e-16
Identities = 76/319 (23%), Positives = 144/319 (45%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
+ +QDQ GS+++Q L +F + ++LM +G +V KF E +
Sbjct: 853 IMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLE 912
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMT 133
Q + +I + + LA + +G ++K ++ + ++ ++ L +
Sbjct: 913 QKLALAERI--RGHVLSLA-LQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKD 969
Query: 134 KPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILH 193
+ G+ V+ +C+E FI A L+ H GC + +++ + IL
Sbjct: 970 QNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILE 1029
Query: 194 LISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLK 253
+ + L + + GNYV+QHVL P I +RG+ + LS K S VV+KC+
Sbjct: 1030 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVT 1089
Query: 254 YQNAVH--YIIEEL--LNS---DQILQVANDKYGNYVIQTAL--AETMRQDRLSVHQRLV 304
+ + +I+E+ +N + + D+Y NYV+Q + AE Q ++ +H
Sbjct: 1090 HASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEP-GQRKIVMH---- 1144
Query: 305 TKLQQHLAALRVMKYGSNV 323
K++ H+A LR YG ++
Sbjct: 1145 -KIRPHIATLRKYTYGKHI 1162
Score = 119 (46.9 bits), Expect = 0.00096, P = 0.00096
Identities = 57/264 (21%), Positives = 110/264 (41%)
Query: 2 QTIAF-EHCTNHDLFSLAQDQEGSQYLQENLS--SGDSRILDKLFWVVSGFTFELMSGQY 58
Q +A E H L SLA G + +Q+ L D ++++++ + G + + Q
Sbjct: 913 QKLALAERIRGHVL-SLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQN 971
Query: 59 GRFVFGKFIESCNESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAH-LPPLLY 117
G V K IE L II F+ Q+F L S +G ++++++ H LP
Sbjct: 972 GNHVVQKCIECVQPQSLQFII--DAFKGQVFAL-STHPYGCRVIQRILE---HCLPDQTL 1025
Query: 118 HVMSALKRLFKFLMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLN 177
++ L + + L+ + G+ VI LE I + L L+ H+ +
Sbjct: 1026 PILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 1085
Query: 178 NFIDNMKGSRRKQIL-HLISVNAA------SLSRHRSGNYVVQHVLSLEDPFLIDAICFA 230
+ + + R ++ + ++N ++ + + NYVVQ ++ + +P +
Sbjct: 1086 KCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHK 1145
Query: 231 LRGHYVDLSLTKCGSFVVQKCLKY 254
+R H L G ++ K KY
Sbjct: 1146 IRPHIATLRKYTYGKHILAKLEKY 1169
>UNIPROTKB|Q2VB19 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005737
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 eggNOG:COG5099 GeneTree:ENSGT00390000017241
HSSP:Q14671 EMBL:DQ275191 EMBL:AJ851393 IPI:IPI00581936
IPI:IPI00682137 RefSeq:NP_001012858.1 UniGene:Gga.22920
ProteinModelPortal:Q2VB19 SMR:Q2VB19 Ensembl:ENSGALT00000000834
Ensembl:ENSGALT00000035201 GeneID:419554 KEGG:gga:419554 CTD:9698
HOGENOM:HOG000238461 HOVERGEN:HBG049462 InParanoid:Q2VB19
OMA:RHVVGVK OrthoDB:EOG4P8FHP NextBio:20822590 Uniprot:Q2VB19
Length = 1189
Score = 226 (84.6 bits), Expect = 6.1e-16, P = 6.1e-16
Identities = 76/319 (23%), Positives = 144/319 (45%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
+ +QDQ GS+++Q L +F + ++LM +G +V KF E +
Sbjct: 854 IMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLE 913
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMT 133
Q + +I + + LA + +G ++K ++ + ++ ++ L +
Sbjct: 914 QKLALAERI--RGHVLSLA-LQMYGCRVIQKALEFIPPDQQVINEMVRELDGHVLKCVKD 970
Query: 134 KPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILH 193
+ G+ V+ +C+E FI A L+ H GC + +++ + IL
Sbjct: 971 QNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPEQTLPILE 1030
Query: 194 LISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLK 253
+ + L + + GNYV+QHVL P I +RG+ + LS K S VV+KC+
Sbjct: 1031 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVT 1090
Query: 254 YQNAVH--YIIEEL--LNS---DQILQVANDKYGNYVIQTAL--AETMRQDRLSVHQRLV 304
+ + +I+E+ +N + + D+Y NYV+Q + AE Q ++ +H
Sbjct: 1091 HASRTERAMLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPA-QRKIVMH---- 1145
Query: 305 TKLQQHLAALRVMKYGSNV 323
K++ H+A LR YG ++
Sbjct: 1146 -KIRPHIATLRKYTYGKHI 1163
Score = 120 (47.3 bits), Expect = 0.00075, P = 0.00075
Identities = 57/264 (21%), Positives = 110/264 (41%)
Query: 2 QTIAF-EHCTNHDLFSLAQDQEGSQYLQENLS--SGDSRILDKLFWVVSGFTFELMSGQY 58
Q +A E H L SLA G + +Q+ L D ++++++ + G + + Q
Sbjct: 914 QKLALAERIRGHVL-SLALQMYGCRVIQKALEFIPPDQQVINEMVRELDGHVLKCVKDQN 972
Query: 59 GRFVFGKFIESCNESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAH-LPPLLY 117
G V K IE L II F+ Q+F L S +G ++++++ H LP
Sbjct: 973 GNHVVQKCIECVQPQSLQFII--DAFKGQVFAL-STHPYGCRVIQRILE---HCLPEQTL 1026
Query: 118 HVMSALKRLFKFLMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLN 177
++ L + + L+ + G+ VI LE I + L L+ H+ +
Sbjct: 1027 PILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 1086
Query: 178 NFIDNMKGSRRKQIL-HLISVNAA------SLSRHRSGNYVVQHVLSLEDPFLIDAICFA 230
+ + + R ++ + ++N ++ + + NYVVQ ++ + +P +
Sbjct: 1087 KCVTHASRTERAMLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHK 1146
Query: 231 LRGHYVDLSLTKCGSFVVQKCLKY 254
+R H L G ++ K KY
Sbjct: 1147 IRPHIATLRKYTYGKHILAKLEKY 1170
>UNIPROTKB|Q5T1Z4 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
EMBL:CH471059 GO:GO:0003723 HOGENOM:HOG000238461 HOVERGEN:HBG049462
OrthoDB:EOG4P8FHP EMBL:AL356320 EMBL:AL445235 UniGene:Hs.281707
HGNC:HGNC:14957 ChiTaRS:PUM1 IPI:IPI00646054 SMR:Q5T1Z4
STRING:Q5T1Z4 Ensembl:ENST00000373747 UCSC:uc001bsf.1
Uniprot:Q5T1Z4
Length = 1189
Score = 226 (84.6 bits), Expect = 6.1e-16, P = 6.1e-16
Identities = 76/319 (23%), Positives = 144/319 (45%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
+ +QDQ GS+++Q L +F + ++LM +G +V KF E +
Sbjct: 854 IMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLE 913
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMT 133
Q + +I + + LA + +G ++K ++ + ++ ++ L +
Sbjct: 914 QKLALAERI--RGHVLSLA-LQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKD 970
Query: 134 KPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILH 193
+ G+ V+ +C+E FI A L+ H GC + +++ + IL
Sbjct: 971 QNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILE 1030
Query: 194 LISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLK 253
+ + L + + GNYV+QHVL P I +RG+ + LS K S VV+KC+
Sbjct: 1031 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVT 1090
Query: 254 YQNAVH--YIIEEL--LNS---DQILQVANDKYGNYVIQTAL--AETMRQDRLSVHQRLV 304
+ + +I+E+ +N + + D+Y NYV+Q + AE Q ++ +H
Sbjct: 1091 HASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEP-GQRKIVMH---- 1145
Query: 305 TKLQQHLAALRVMKYGSNV 323
K++ H+A LR YG ++
Sbjct: 1146 -KIRPHIATLRKYTYGKHI 1163
Score = 119 (46.9 bits), Expect = 0.00096, P = 0.00096
Identities = 57/264 (21%), Positives = 110/264 (41%)
Query: 2 QTIAF-EHCTNHDLFSLAQDQEGSQYLQENLS--SGDSRILDKLFWVVSGFTFELMSGQY 58
Q +A E H L SLA G + +Q+ L D ++++++ + G + + Q
Sbjct: 914 QKLALAERIRGHVL-SLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQN 972
Query: 59 GRFVFGKFIESCNESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAH-LPPLLY 117
G V K IE L II F+ Q+F L S +G ++++++ H LP
Sbjct: 973 GNHVVQKCIECVQPQSLQFII--DAFKGQVFAL-STHPYGCRVIQRILE---HCLPDQTL 1026
Query: 118 HVMSALKRLFKFLMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLN 177
++ L + + L+ + G+ VI LE I + L L+ H+ +
Sbjct: 1027 PILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 1086
Query: 178 NFIDNMKGSRRKQIL-HLISVNAA------SLSRHRSGNYVVQHVLSLEDPFLIDAICFA 230
+ + + R ++ + ++N ++ + + NYVVQ ++ + +P +
Sbjct: 1087 KCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHK 1146
Query: 231 LRGHYVDLSLTKCGSFVVQKCLKY 254
+R H L G ++ K KY
Sbjct: 1147 IRPHIATLRKYTYGKHILAKLEKY 1170
>UNIPROTKB|Q5T1Z8 [details] [associations]
symbol:PUM1 "Pumilio homolog 1 (Drosophila), isoform CRA_c"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 EMBL:CH471059 GO:GO:0003723 HOGENOM:HOG000238461
HOVERGEN:HBG049462 OMA:RHVVGVK EMBL:AL356320 EMBL:AL445235
UniGene:Hs.281707 HGNC:HGNC:14957 ChiTaRS:PUM1 IPI:IPI00032355
SMR:Q5T1Z8 STRING:Q5T1Z8 Ensembl:ENST00000373741 UCSC:uc001bsk.1
Uniprot:Q5T1Z8
Length = 1224
Score = 226 (84.6 bits), Expect = 6.4e-16, P = 6.4e-16
Identities = 76/319 (23%), Positives = 144/319 (45%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
+ +QDQ GS+++Q L +F + ++LM +G +V KF E +
Sbjct: 889 IMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLE 948
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMT 133
Q + +I + + LA + +G ++K ++ + ++ ++ L +
Sbjct: 949 QKLALAERI--RGHVLSLA-LQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKD 1005
Query: 134 KPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILH 193
+ G+ V+ +C+E FI A L+ H GC + +++ + IL
Sbjct: 1006 QNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILE 1065
Query: 194 LISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLK 253
+ + L + + GNYV+QHVL P I +RG+ + LS K S VV+KC+
Sbjct: 1066 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVT 1125
Query: 254 YQNAVH--YIIEEL--LNS---DQILQVANDKYGNYVIQTAL--AETMRQDRLSVHQRLV 304
+ + +I+E+ +N + + D+Y NYV+Q + AE Q ++ +H
Sbjct: 1126 HASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEP-GQRKIVMH---- 1180
Query: 305 TKLQQHLAALRVMKYGSNV 323
K++ H+A LR YG ++
Sbjct: 1181 -KIRPHIATLRKYTYGKHI 1198
Score = 119 (46.9 bits), Expect = 0.0010, P = 0.0010
Identities = 57/264 (21%), Positives = 110/264 (41%)
Query: 2 QTIAF-EHCTNHDLFSLAQDQEGSQYLQENLS--SGDSRILDKLFWVVSGFTFELMSGQY 58
Q +A E H L SLA G + +Q+ L D ++++++ + G + + Q
Sbjct: 949 QKLALAERIRGHVL-SLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQN 1007
Query: 59 GRFVFGKFIESCNESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAH-LPPLLY 117
G V K IE L II F+ Q+F L S +G ++++++ H LP
Sbjct: 1008 GNHVVQKCIECVQPQSLQFII--DAFKGQVFAL-STHPYGCRVIQRILE---HCLPDQTL 1061
Query: 118 HVMSALKRLFKFLMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLN 177
++ L + + L+ + G+ VI LE I + L L+ H+ +
Sbjct: 1062 PILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 1121
Query: 178 NFIDNMKGSRRKQIL-HLISVNAA------SLSRHRSGNYVVQHVLSLEDPFLIDAICFA 230
+ + + R ++ + ++N ++ + + NYVVQ ++ + +P +
Sbjct: 1122 KCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHK 1181
Query: 231 LRGHYVDLSLTKCGSFVVQKCLKY 254
+R H L G ++ K KY
Sbjct: 1182 IRPHIATLRKYTYGKHILAKLEKY 1205
>UNIPROTKB|F1N2B8 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 OMA:LFDYSSQ EMBL:DAAA02031737
IPI:IPI00703675 Ensembl:ENSBTAT00000014813 Uniprot:F1N2B8
Length = 1069
Score = 223 (83.6 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 75/319 (23%), Positives = 144/319 (45%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
+ +QDQ GS+++Q+ L +F + ++LM+ +G +V KF E +
Sbjct: 736 IVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLD 795
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMT 133
Q + +I + + LA + +G ++K ++ ++ ++ L +
Sbjct: 796 QKLALATRI--RGHVLPLA-LQMYGCRVIQKALESISS--DQQSEMVKELDGHVLKCVKD 850
Query: 134 KPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILH 193
+ G+ V+ +C+E FI A L+ H GC + +++ + IL
Sbjct: 851 QNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILE 910
Query: 194 LISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLK 253
+ + L + + GNYV+QHVL P I +RG + LS K S VV+KC+
Sbjct: 911 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVT 970
Query: 254 YQNAVH--YIIEELL-NSD----QILQVANDKYGNYVIQTAL--AETMRQDRLSVHQRLV 304
+ + +I+E+ +D + + D+Y NYV+Q + AE Q ++ +H
Sbjct: 971 HASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPA-QRKIIMH---- 1025
Query: 305 TKLQQHLAALRVMKYGSNV 323
K++ H++ LR YG ++
Sbjct: 1026 -KIRPHISTLRKYTYGKHI 1043
>ZFIN|ZDB-GENE-030131-2074 [details] [associations]
symbol:pum1 "pumilio homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 ZFIN:ZDB-GENE-030131-2074 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
GeneTree:ENSGT00390000017241 EMBL:CABZ01057427 EMBL:CABZ01093012
EMBL:CU207343 IPI:IPI00995409 Ensembl:ENSDART00000122308
ArrayExpress:E7FFV0 Bgee:E7FFV0 Uniprot:E7FFV0
Length = 1154
Score = 223 (83.6 bits), Expect = 1.4e-15, P = 1.4e-15
Identities = 79/323 (24%), Positives = 148/323 (45%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
+ +QDQ GS+++Q L +F + ++LM +G +V KF E +
Sbjct: 818 VMEFSQDQHGSRFIQLKLERASPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLD 877
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMT 133
Q + +I + + LA + +G ++K ++ + ++ ++ L +
Sbjct: 878 QKLALAERI--RGHVLSLA-LQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKD 934
Query: 134 KPGSSVILQCLEPSYNHKNDFIYQAALEHCLY-LACHEQGCINLNNFIDNMKGSRRKQIL 192
+ G+ V+ +C+E H FI A ++ L+ H GC + +++ + IL
Sbjct: 935 QNGNHVVQKCIECVQPHALQFIIDAFKGQQVFALSTHPYGCRVIQRILEHCLPEQTLSIL 994
Query: 193 HLISVNAASLSRHRSGNYVVQHVLS---LEDPFLIDAICFALRGHYVDLSLTKCGSFVVQ 249
I + L + + GNYV+QHVL ED I +RG+ + LS K S VV+
Sbjct: 995 EEIHQHTEQLVQDQYGNYVIQHVLEHGRAEDK---SKIVSEIRGNVLGLSQHKFASNVVE 1051
Query: 250 KCLKYQNAVH--YIIEELLN-SD----QILQVANDKYGNYVIQTAL--AETMRQDRLSVH 300
KC+ + +I+E+ + +D + + D+Y NYV+Q + AE Q ++ +H
Sbjct: 1052 KCVTHSLRAERAMLIDEVCSMADGPHSALYTMMKDQYANYVVQKMIDVAEPT-QRKIVMH 1110
Query: 301 QRLVTKLQQHLAALRVMKYGSNV 323
K++ H+A LR YG ++
Sbjct: 1111 -----KIRPHIATLRKYTYGKHI 1128
>UNIPROTKB|B4E2B6 [details] [associations]
symbol:PUM2 "Pumilio homolog 2" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP EMBL:AC007041
UniGene:Hs.467824 HGNC:HGNC:14958 ChiTaRS:PUM2 EMBL:AK304198
IPI:IPI01009448 SMR:B4E2B6 STRING:B4E2B6 Ensembl:ENST00000536417
UCSC:uc010yjz.1 Uniprot:B4E2B6
Length = 1008
Score = 222 (83.2 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 75/319 (23%), Positives = 143/319 (44%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
+ +QDQ GS+++Q+ L +F + ++LM+ +G +V KF E +
Sbjct: 675 IVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLD 734
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMT 133
Q + +I + + LA + +G ++K ++ ++ ++ L +
Sbjct: 735 QKLALATRI--RGHVLPLA-LQMYGCRVIQKALESISS--DQQSEMVKELDGHVLKCVKD 789
Query: 134 KPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILH 193
+ G+ V+ +C+E FI A L+ H GC + +++ + IL
Sbjct: 790 QNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILE 849
Query: 194 LISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLK 253
+ + L + + GNYV+QHVL P I +RG + LS K S VV+KC+
Sbjct: 850 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVT 909
Query: 254 YQNAVH--YIIEELL-NSD----QILQVANDKYGNYVIQTAL--AETMRQDRLSVHQRLV 304
+ + +I+E+ +D + + D+Y NYV+Q + AE Q ++ +H
Sbjct: 910 HASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPA-QRKIIMH---- 964
Query: 305 TKLQQHLAALRVMKYGSNV 323
K++ H+ LR YG ++
Sbjct: 965 -KIRPHITTLRKYTYGKHI 982
>UNIPROTKB|E2RT57 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 CTD:23369 OMA:LFDYSSQ
EMBL:AAEX03010760 RefSeq:XP_849088.1 Ensembl:ENSCAFT00000006180
GeneID:607618 KEGG:cfa:607618 Uniprot:E2RT57
Length = 1063
Score = 222 (83.2 bits), Expect = 1.7e-15, P = 1.7e-15
Identities = 75/319 (23%), Positives = 143/319 (44%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
+ +QDQ GS+++Q+ L +F + ++LM+ +G +V KF E +
Sbjct: 730 IVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLD 789
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMT 133
Q + +I + + LA + +G ++K ++ ++ ++ L +
Sbjct: 790 QKLALATRI--RGHVLPLA-LQMYGCRVIQKALESISS--DQQSEMVKELDGHVLKCVKD 844
Query: 134 KPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILH 193
+ G+ V+ +C+E FI A L+ H GC + +++ + IL
Sbjct: 845 QNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILE 904
Query: 194 LISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLK 253
+ + L + + GNYV+QHVL P I +RG + LS K S VV+KC+
Sbjct: 905 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVT 964
Query: 254 YQNAVH--YIIEELL-NSD----QILQVANDKYGNYVIQTAL--AETMRQDRLSVHQRLV 304
+ + +I+E+ +D + + D+Y NYV+Q + AE Q ++ +H
Sbjct: 965 HASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPA-QRKIIMH---- 1019
Query: 305 TKLQQHLAALRVMKYGSNV 323
K++ H+ LR YG ++
Sbjct: 1020 -KIRPHITTLRKYTYGKHI 1037
>UNIPROTKB|F1SCU6 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 OMA:LFDYSSQ EMBL:AEMK01186664
EMBL:CU466989 Ensembl:ENSSSCT00000009411 Uniprot:F1SCU6
Length = 1064
Score = 222 (83.2 bits), Expect = 1.7e-15, P = 1.7e-15
Identities = 75/319 (23%), Positives = 143/319 (44%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
+ +QDQ GS+++Q+ L +F + ++LM+ +G +V KF E +
Sbjct: 731 IVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLD 790
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMT 133
Q + +I + + LA + +G ++K ++ ++ ++ L +
Sbjct: 791 QKLALATRI--RGHVLPLA-LQMYGCRVIQKALESISS--DQQSEMVKELDGHVLKCVKD 845
Query: 134 KPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILH 193
+ G+ V+ +C+E FI A L+ H GC + +++ + IL
Sbjct: 846 QNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILE 905
Query: 194 LISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLK 253
+ + L + + GNYV+QHVL P I +RG + LS K S VV+KC+
Sbjct: 906 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVT 965
Query: 254 YQNAVH--YIIEELL-NSD----QILQVANDKYGNYVIQTAL--AETMRQDRLSVHQRLV 304
+ + +I+E+ +D + + D+Y NYV+Q + AE Q ++ +H
Sbjct: 966 HASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPA-QRKIIMH---- 1020
Query: 305 TKLQQHLAALRVMKYGSNV 323
K++ H+ LR YG ++
Sbjct: 1021 -KIRPHITTLRKYTYGKHI 1038
>RGD|1307190 [details] [associations]
symbol:Pum1 "pumilio homolog 1 (Drosophila)" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 RGD:1307190 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 IPI:IPI00776810
Ensembl:ENSRNOT00000056233 UCSC:RGD:1307190 ArrayExpress:D3ZHQ4
Uniprot:D3ZHQ4
Length = 944
Score = 219 (82.2 bits), Expect = 3.4e-15, P = 3.4e-15
Identities = 78/320 (24%), Positives = 144/320 (45%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIE-SCNE 72
+ +QDQ GS+++Q L + +F + ++LM +G +V KF E +E
Sbjct: 611 IMEFSQDQHGSRFIQLKLERATAAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSHE 670
Query: 73 SQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMM 132
+LAL + + LA + +G ++K ++ + ++ L +
Sbjct: 671 QKLALAE---RIRGHVLSLA-LQMYGCRVIQKALEFIPS--DQQNEMVRELDGHVLKCVK 724
Query: 133 TKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQIL 192
+ G+ V+ +C+E FI A L+ H GC + +++ + IL
Sbjct: 725 DQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPIL 784
Query: 193 HLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCL 252
+ + L + + GNYV+QHVL P I +RG+ + LS K S VV+KC+
Sbjct: 785 EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCV 844
Query: 253 KYQNAVH--YIIEEL--LNS---DQILQVANDKYGNYVIQTAL--AETMRQDRLSVHQRL 303
+ + +I+E+ +N + + D+Y NYV+Q + AE Q ++ +H
Sbjct: 845 THASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEP-GQRKIVMH--- 900
Query: 304 VTKLQQHLAALRVMKYGSNV 323
K++ H+A LR YG ++
Sbjct: 901 --KIRPHIATLRKYTYGKHI 918
>WB|WBGene00004245 [details] [associations]
symbol:puf-9 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040017 "positive regulation of locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0006402 "mRNA catabolic process" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0002009 GO:GO:0005737 GO:GO:0040010 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0017148 GO:GO:0040011
GO:GO:0040017 GO:GO:0003730 GO:GO:0006402 EMBL:FO081143
eggNOG:COG5099 HSSP:Q14671 GeneTree:ENSGT00680000100664 PIR:T26218
RefSeq:NP_508980.2 ProteinModelPortal:Q23191 SMR:Q23191
STRING:Q23191 PaxDb:Q23191 EnsemblMetazoa:W06B11.2.1
EnsemblMetazoa:W06B11.2.2 GeneID:180850 KEGG:cel:CELE_W06B11.2
UCSC:W06B11.2 CTD:180850 WormBase:W06B11.2 HOGENOM:HOG000020400
InParanoid:Q23191 OMA:TIKPHIA NextBio:911254 Uniprot:Q23191
Length = 703
Score = 214 (80.4 bits), Expect = 8.4e-15, P = 8.4e-15
Identities = 73/324 (22%), Positives = 147/324 (45%)
Query: 12 HDLFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCN 71
+++ A+DQ GS+++Q+ L R +F V ELM+ +G +V KF E N
Sbjct: 345 NNVIEFAKDQHGSRFIQQKLERASLRDKAAIFTPVLENAEELMTDVFGNYVIQKFFEFGN 404
Query: 72 ESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLM 131
Q ++ T + + LA + +G ++K ++ V + ++ ++ +
Sbjct: 405 NEQRNQLVG--TIRGNVMKLA-LQMYGCRVIQKALEYVEE--KYQHEILGEMEGQVLKCV 459
Query: 132 MTKPGSSVILQCLEPSYNHKNDFIYQAALEHC---LY-LACHEQGCINLNNFIDNMKGSR 187
+ G+ VI + +E + FI A ++ +Y L+ H GC + ++ +
Sbjct: 460 KDQNGNHVIQKVIERVEPERLQFIIDAFTKNNSDNVYTLSVHPYGCRVIQRVLEYCNEEQ 519
Query: 188 RKQILHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICF-ALRGHYVDLSLTKCGSF 246
++ +L + ++ L + GNYV+QHV+ P + I + + + K S
Sbjct: 520 KQPVLDALQIHLKQLVLDQYGNYVIQHVIEHGSPSDKEQIVQDVISDDLLKFAQHKFASN 579
Query: 247 VVQKCLKYQNAV--HYIIEELLN-----SDQILQVANDKYGNYVIQTALAETMRQDRLSV 299
V++KCL + + II+++ S +LQ+ D + NYV+Q L Q R
Sbjct: 580 VIEKCLTFGGHAERNLIIDKVCGDPNDPSPPLLQMMKDPFANYVVQKMLDVADPQHR--- 636
Query: 300 HQRLVTKLQQHLAALRVMKYGSNV 323
+++ ++ H+A LR +G ++
Sbjct: 637 -KKITLTIKPHIATLRKYNFGKHI 659
>UNIPROTKB|F1STL2 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 EMBL:CU928875
Ensembl:ENSSSCT00000003986 OMA:ANHVVEF Uniprot:F1STL2
Length = 735
Score = 214 (80.4 bits), Expect = 9.1e-15, P = 9.1e-15
Identities = 76/319 (23%), Positives = 142/319 (44%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
+ +QDQ GS+++Q L +F + ++LM +G +V KF E +
Sbjct: 402 IMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLE 461
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMT 133
Q + +I + + LA + +G ++K ++ + ++ L +
Sbjct: 462 QKLALAERI--RGHVLSLA-LQMYGCRVIQKALEFIPS--DQQNEMVRELDGHVLKCVKD 516
Query: 134 KPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILH 193
+ G+ V+ +C+E FI A L+ H GC + +++ + IL
Sbjct: 517 QNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILE 576
Query: 194 LISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLK 253
+ + L + + GNYV+QHVL P I +RG+ + LS K S VV+KC+
Sbjct: 577 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVT 636
Query: 254 YQNAVH--YIIEEL--LNS---DQILQVANDKYGNYVIQTAL--AETMRQDRLSVHQRLV 304
+ + +I+E+ +N + + D+Y NYV+Q + AE Q ++ +H
Sbjct: 637 HASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPA-QRKIVMH---- 691
Query: 305 TKLQQHLAALRVMKYGSNV 323
K++ H+A LR YG ++
Sbjct: 692 -KIRPHIATLRKYTYGKHI 709
>UNIPROTKB|E9PR38 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 IPI:IPI00909786 ProteinModelPortal:E9PR38 SMR:E9PR38
Ensembl:ENST00000424085 ArrayExpress:E9PR38 Bgee:E9PR38
Uniprot:E9PR38
Length = 944
Score = 213 (80.0 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 76/319 (23%), Positives = 142/319 (44%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
+ +QDQ GS+++Q L +F + ++LM +G +V KF E +
Sbjct: 611 IMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLE 670
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMT 133
Q + +I + + LA + +G ++K ++ + ++ L +
Sbjct: 671 QKLALAERI--RGHVLSLA-LQMYGCRVIQKALEFIPS--DQQNEMVRELDGHVLKCVKD 725
Query: 134 KPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILH 193
+ G+ V+ +C+E FI A L+ H GC + +++ + IL
Sbjct: 726 QNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILE 785
Query: 194 LISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLK 253
+ + L + + GNYV+QHVL P I +RG+ + LS K S VV+KC+
Sbjct: 786 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVT 845
Query: 254 YQNAVH--YIIEEL--LNS---DQILQVANDKYGNYVIQTAL--AETMRQDRLSVHQRLV 304
+ + +I+E+ +N + + D+Y NYV+Q + AE Q ++ +H
Sbjct: 846 HASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEP-GQRKIVMH---- 900
Query: 305 TKLQQHLAALRVMKYGSNV 323
K++ H+A LR YG ++
Sbjct: 901 -KIRPHIATLRKYTYGKHI 918
>UNIPROTKB|E1BE82 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 CTD:9698 OMA:RHVVGVK
EMBL:DAAA02006263 EMBL:DAAA02006264 EMBL:DAAA02006265
IPI:IPI00713931 RefSeq:NP_001180052.1 UniGene:Bt.44441
Ensembl:ENSBTAT00000025262 GeneID:535450 KEGG:bta:535450
NextBio:20876753 Uniprot:E1BE82
Length = 1186
Score = 214 (80.4 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 76/319 (23%), Positives = 142/319 (44%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
+ +QDQ GS+++Q L +F + ++LM +G +V KF E +
Sbjct: 853 IMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLE 912
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMT 133
Q + +I + + LA + +G ++K ++ + ++ L +
Sbjct: 913 QKLALAERI--RGHVLSLA-LQMYGCRVIQKALEFIPS--DQQNEMVRELDGHVLKCVKD 967
Query: 134 KPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILH 193
+ G+ V+ +C+E FI A L+ H GC + +++ + IL
Sbjct: 968 QNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILE 1027
Query: 194 LISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLK 253
+ + L + + GNYV+QHVL P I +RG+ + LS K S VV+KC+
Sbjct: 1028 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVT 1087
Query: 254 YQNAVH--YIIEEL--LNS---DQILQVANDKYGNYVIQTAL--AETMRQDRLSVHQRLV 304
+ + +I+E+ +N + + D+Y NYV+Q + AE Q ++ +H
Sbjct: 1088 HASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPA-QRKIVMH---- 1142
Query: 305 TKLQQHLAALRVMKYGSNV 323
K++ H+A LR YG ++
Sbjct: 1143 -KIRPHIATLRKYTYGKHI 1160
>UNIPROTKB|H0YEH2 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000525843 Uniprot:H0YEH2
Length = 1125
Score = 213 (80.0 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 76/319 (23%), Positives = 142/319 (44%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
+ +QDQ GS+++Q L +F + ++LM +G +V KF E +
Sbjct: 792 IMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLE 851
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMT 133
Q + +I + + LA + +G ++K ++ + ++ L +
Sbjct: 852 QKLALAERI--RGHVLSLA-LQMYGCRVIQKALEFIPS--DQQNEMVRELDGHVLKCVKD 906
Query: 134 KPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILH 193
+ G+ V+ +C+E FI A L+ H GC + +++ + IL
Sbjct: 907 QNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILE 966
Query: 194 LISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLK 253
+ + L + + GNYV+QHVL P I +RG+ + LS K S VV+KC+
Sbjct: 967 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVT 1026
Query: 254 YQNAVH--YIIEEL--LNS---DQILQVANDKYGNYVIQTAL--AETMRQDRLSVHQRLV 304
+ + +I+E+ +N + + D+Y NYV+Q + AE Q ++ +H
Sbjct: 1027 HASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEP-GQRKIVMH---- 1081
Query: 305 TKLQQHLAALRVMKYGSNV 323
K++ H+A LR YG ++
Sbjct: 1082 -KIRPHIATLRKYTYGKHI 1099
>UNIPROTKB|B4DG92 [details] [associations]
symbol:PUM1 "cDNA FLJ56067, highly similar to Pumilio
homolog 1" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
HOGENOM:HOG000238461 HOVERGEN:HBG049462 EMBL:AL356320 EMBL:AL445235
UniGene:Hs.281707 HGNC:HGNC:14957 ChiTaRS:PUM1 EMBL:AK294477
IPI:IPI00939543 SMR:B4DG92 STRING:B4DG92 Ensembl:ENST00000373742
UCSC:uc010ogb.1 Uniprot:B4DG92
Length = 1127
Score = 213 (80.0 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 76/319 (23%), Positives = 142/319 (44%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
+ +QDQ GS+++Q L +F + ++LM +G +V KF E +
Sbjct: 794 IMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLE 853
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMT 133
Q + +I + + LA + +G ++K ++ + ++ L +
Sbjct: 854 QKLALAERI--RGHVLSLA-LQMYGCRVIQKALEFIPS--DQQNEMVRELDGHVLKCVKD 908
Query: 134 KPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILH 193
+ G+ V+ +C+E FI A L+ H GC + +++ + IL
Sbjct: 909 QNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILE 968
Query: 194 LISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLK 253
+ + L + + GNYV+QHVL P I +RG+ + LS K S VV+KC+
Sbjct: 969 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVT 1028
Query: 254 YQNAVH--YIIEEL--LNS---DQILQVANDKYGNYVIQTAL--AETMRQDRLSVHQRLV 304
+ + +I+E+ +N + + D+Y NYV+Q + AE Q ++ +H
Sbjct: 1029 HASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEP-GQRKIVMH---- 1083
Query: 305 TKLQQHLAALRVMKYGSNV 323
K++ H+A LR YG ++
Sbjct: 1084 -KIRPHIATLRKYTYGKHI 1101
>UNIPROTKB|Q14671 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006892 "post-Golgi vesicle-mediated transport" evidence=TAS]
[GO:0016044 "cellular membrane organization" evidence=TAS]
Reactome:REACT_11123 InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0005829 GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 EMBL:CH471059 GO:GO:0003723 GO:GO:0016044
GO:GO:0006892 eggNOG:COG5099 CTD:9698 HOGENOM:HOG000238461
HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP EMBL:AF315592 EMBL:D43951
EMBL:AL356320 EMBL:AL445235 EMBL:AK291779 EMBL:BC013398
IPI:IPI00551014 IPI:IPI00941189 RefSeq:NP_001018494.1
RefSeq:NP_055491.1 UniGene:Hs.281707 PDB:1IB2 PDB:1M8W PDB:1M8X
PDB:1M8Y PDB:1M8Z PDB:2YJY PDB:3BSB PDB:3BSX PDB:3Q0L PDB:3Q0M
PDB:3Q0N PDB:3Q0O PDB:3Q0P PDBsum:1IB2 PDBsum:1M8W PDBsum:1M8X
PDBsum:1M8Y PDBsum:1M8Z PDBsum:2YJY PDBsum:3BSB PDBsum:3BSX
PDBsum:3Q0L PDBsum:3Q0M PDBsum:3Q0N PDBsum:3Q0O PDBsum:3Q0P
ProteinModelPortal:Q14671 SMR:Q14671 DIP:DIP-29082N IntAct:Q14671
MINT:MINT-1199500 STRING:Q14671 PhosphoSite:Q14671 DMDM:41688619
UCD-2DPAGE:Q14671 PaxDb:Q14671 PRIDE:Q14671 DNASU:9698
Ensembl:ENST00000257075 Ensembl:ENST00000440538 GeneID:9698
KEGG:hsa:9698 UCSC:uc001bsi.1 UCSC:uc001bsj.1 GeneCards:GC01M031405
HGNC:HGNC:14957 HPA:HPA027424 MIM:607204 neXtProt:NX_Q14671
PharmGKB:PA34042 PhylomeDB:Q14671 ChiTaRS:PUM1
EvolutionaryTrace:Q14671 GenomeRNAi:9698 NextBio:36439
ArrayExpress:Q14671 Bgee:Q14671 CleanEx:HS_PUM1
Genevestigator:Q14671 GermOnline:ENSG00000134644 Uniprot:Q14671
Length = 1186
Score = 213 (80.0 bits), Expect = 2.5e-14, P = 2.5e-14
Identities = 76/319 (23%), Positives = 142/319 (44%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
+ +QDQ GS+++Q L +F + ++LM +G +V KF E +
Sbjct: 853 IMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLE 912
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMT 133
Q + +I + + LA + +G ++K ++ + ++ L +
Sbjct: 913 QKLALAERI--RGHVLSLA-LQMYGCRVIQKALEFIPS--DQQNEMVRELDGHVLKCVKD 967
Query: 134 KPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILH 193
+ G+ V+ +C+E FI A L+ H GC + +++ + IL
Sbjct: 968 QNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILE 1027
Query: 194 LISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLK 253
+ + L + + GNYV+QHVL P I +RG+ + LS K S VV+KC+
Sbjct: 1028 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVT 1087
Query: 254 YQNAVH--YIIEEL--LNS---DQILQVANDKYGNYVIQTAL--AETMRQDRLSVHQRLV 304
+ + +I+E+ +N + + D+Y NYV+Q + AE Q ++ +H
Sbjct: 1088 HASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEP-GQRKIVMH---- 1142
Query: 305 TKLQQHLAALRVMKYGSNV 323
K++ H+A LR YG ++
Sbjct: 1143 -KIRPHIATLRKYTYGKHI 1160
>CGD|CAL0000028 [details] [associations]
symbol:MPT5 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0045947 "negative regulation of
translational initiation" evidence=IEA] [GO:1900153 "positive
regulation of nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0030674 "protein binding, bridging"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 CGD:CAL0000028
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AACQ01000010 EMBL:AACQ01000009 eggNOG:COG5099
RefSeq:XP_722196.1 RefSeq:XP_722310.1 ProteinModelPortal:Q5AKY7
GeneID:3636032 GeneID:3636205 KEGG:cal:CaO19.12458
KEGG:cal:CaO19.4991 Uniprot:Q5AKY7
Length = 938
Score = 200 (75.5 bits), Expect = 5.9e-13, P = 5.9e-13
Identities = 88/324 (27%), Positives = 157/324 (48%)
Query: 13 DLFSLAQDQEGSQYLQENLSSG-----DSRI--LDKLFWVVSGFTFELMSGQYGRFVFGK 65
++ LA+DQ G ++LQ+ + R+ + +F + +EL+ +G ++ K
Sbjct: 285 EILKLAKDQYGCRFLQKKIDESLVPNYQVRLANFEIIFNQIYSHVYELIVDPFGNYLIQK 344
Query: 66 FIESCNESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVV--AHLPPLLYHVMSAL 123
I CNES L L+ ++I Q LF + S+++ G+ +++K+I + +H LL + L
Sbjct: 345 LIVYCNESNLDLL-MEI-LQYNLFQI-SINQHGTRALQKIIDSLNNSHQLGLL---IKGL 398
Query: 124 KRLFKFLMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNM 183
K L+ G+ VI + L FIY + ++ +A H+ GC L ++++
Sbjct: 399 KPYIIELIKDLNGNHVIQKILNKYEPPDCQFIYDSIIDDLYIVATHKHGCCVLQKCLNHV 458
Query: 184 K----GSRRKQILHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLS 239
G + IL N L + GNYV+Q+++S+ +D I F + ++V+
Sbjct: 459 TLQQLGEFSRAILKF--ENFKLLINDQFGNYVLQYLISINS---LD-INFQIFQNFVNFG 512
Query: 240 LT-----KCGSFVVQKCLK--YQNA---VHY------IIEELLNSDQILQVANDKYGNYV 283
++ K S VV+K LK Y N V + +I +L SD + + ND YGNYV
Sbjct: 513 ISNLCNLKFSSNVVEKFLKNCYANESVNVSFSNLKFELIYIILVSDLNVLI-NDPYGNYV 571
Query: 284 IQTALAETMRQDRLSVHQRLVTKL 307
IQT + + M +++ + KL
Sbjct: 572 IQTMI-DIMVNPQVNYQNNNIDKL 594
>POMBASE|SPAC4G8.03c [details] [associations]
symbol:SPAC4G8.03c "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO;IDA]
[GO:0005794 "Golgi apparatus" evidence=IDA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPAC4G8.03c GO:GO:0005794 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
GO:GO:0000288 eggNOG:COG5099 PIR:T38847 RefSeq:NP_593062.1
ProteinModelPortal:Q09829 EnsemblFungi:SPAC4G8.03c.1 GeneID:2543684
KEGG:spo:SPAC4G8.03c OrthoDB:EOG4QJVZ9 NextBio:20804690
Uniprot:Q09829
Length = 780
Score = 198 (74.8 bits), Expect = 7.8e-13, P = 7.8e-13
Identities = 69/283 (24%), Positives = 143/283 (50%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWV-VSGFTFELMSGQYGRFVFGK-FIESCN 71
L ++ +DQ G +YLQ+ L + ++ LF+ + +LM +G ++ K F+ +
Sbjct: 467 LSTICKDQYGCRYLQKLLDE-NPKVNASLFFPEIRQSVVQLMIDPFGNYMCQKLFVYASR 525
Query: 72 ESQLALIILKITFQDQLFLLASVDKFGSSSVKKLI-KVVAH--LPPLLYHVMSALKRLFK 128
E +L+++ + + + S + +G+ S++ +I K+ ++ + LL ++ +L L
Sbjct: 526 EQKLSMLN---GIGEGIVDICS-NLYGTRSMQNIIDKLTSNEQISLLLKIIIPSLTTL-- 579
Query: 129 FLMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRR 188
G+ V+ +C+ K + ++ + E+ + LA + GC L +D G +
Sbjct: 580 --ACDNNGTHVLQKCIAKFPPEKLEPLFLSMEENLITLATNRHGCCILQRCLDRTNGDIQ 637
Query: 189 KQILHLISVNAASLSRHRSGNYVVQHVLSLE-DPFLIDAICFALRGHYVDLSLTKCGSFV 247
+++++ I + L ++ GNY+VQHVL L P+ + I G+ LSL K S
Sbjct: 638 ERLVNSIIKSCLLLVQNAYGNYLVQHVLELNIQPYT-ERIIEKFFGNICKLSLQKFSSNA 696
Query: 248 VQKCLKYQNAV--HYIIEELLNSDQILQVANDKYGNYVIQTAL 288
+++C++ + +++E L+ I Q+ +D Y NYV+Q L
Sbjct: 697 IEQCIRTASPSTREQMLQEFLSFPNIEQLLDDCYANYVMQRFL 739
>POMBASE|SPCC1682.08c [details] [associations]
symbol:SPCC1682.08c "RNA-binding protein Mcp2"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007126
"meiosis" evidence=IEP] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
PomBase:SPCC1682.08c GO:GO:0007126 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003723 eggNOG:COG5099
EMBL:AB189990 PIR:T41065 RefSeq:NP_587801.1
ProteinModelPortal:O74438 EnsemblFungi:SPCC1682.08c.1
GeneID:2539137 KEGG:spo:SPCC1682.08c OMA:FNDSANG OrthoDB:EOG4QNR4B
NextBio:20800309 Uniprot:O74438
Length = 703
Score = 176 (67.0 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 79/336 (23%), Positives = 156/336 (46%)
Query: 13 DLFSLAQDQEGSQYLQENL--SSGDSR--ILDKLFWVVSGFTFELMSGQYGRFVFGKFIE 68
D ++ DQ+ S +LQ+ L SS D + I+D ++S LM ++G F+ + E
Sbjct: 365 DKIIVSNDQQSSIFLQQKLKISSYDMKQNIVDS---IISQI-HPLMLNRFGNFLVQRCFE 420
Query: 69 SCNESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFK 128
Q+ + + LA+ D FG V+K I V + +M L
Sbjct: 421 HGTAPQIRQ--MGSAMLGNMLKLAT-DPFGCHVVQKAIDNVTE--DIKLAMMDELFLTID 475
Query: 129 FLMMTKPGSSVILQCLEPS-YNHKNDFIYQA--ALEHCLY-LACHEQGCINLNNFIDNMK 184
+M V + E Y + + + + AL + +A E G + + N +N
Sbjct: 476 VTIMHHYACHVWQKLFETQWYEYPVNVMNRVNNALRGKWHEVAVGENGSLVVQNMFENCV 535
Query: 185 GSRRKQILHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCG 244
+++ + I + ++R + GN+VVQH++ + + AL V+ S+ +
Sbjct: 536 EKDKRECIEEIIFHLDGIARGQWGNWVVQHMVENGQGEDLKRVIDALLNRAVEFSIDQFA 595
Query: 245 SFVVQKCLKY--QNAVHYIIEELLNS--DQ----ILQVANDKYGNYVIQTALAETMRQDR 296
S V++K +K +N + ++++ N+ D+ ++ +A+D+YGNY+IQ + ++ +
Sbjct: 596 SKVIEKAIKSGPKNFISLYLKQITNARVDRTRQPLIDIASDQYGNYLIQ----QIIQLGQ 651
Query: 297 LSVHQRLVTKLQQHLAALRVMKYGSNV-Y---KWTT 328
+ ++T +++H+ +LR KYG V Y KW +
Sbjct: 652 PAEKNLVITHIKKHMVSLRGSKYGQKVAYLVEKWNS 687
>CGD|CAL0000998 [details] [associations]
symbol:PUF3 species:5476 "Candida albicans" [GO:0032473
"external side of mitochondrial outer membrane" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0008298 "intracellular
mRNA localization" evidence=IEA] [GO:0051646 "mitochondrion
localization" evidence=IEA] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IEA]
[GO:0009060 "aerobic respiration" evidence=IEA] [GO:0007005
"mitochondrion organization" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 CGD:CAL0000998 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 eggNOG:COG5099 EMBL:AACQ01000198
EMBL:AACQ01000197 RefSeq:XP_711443.1 RefSeq:XP_711460.1
ProteinModelPortal:Q59P09 GeneID:3646939 GeneID:3646950
KEGG:cal:CaO19.1795 KEGG:cal:CaO19.9361 Uniprot:Q59P09
Length = 929
Score = 168 (64.2 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 67/305 (21%), Positives = 135/305 (44%)
Query: 19 QDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALI 78
+DQ GS+++Q+ L + +F + ++ELM+ +G +V K+ E +Q ++
Sbjct: 594 KDQHGSRFIQQKLPEATEEEKETIFNEIWEISYELMTDVFGNYVIQKYFEYGTTTQKQVL 653
Query: 79 ILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMTKPGSS 138
+ + + L S+ +G V++ ++ + + L ++ LK + G+
Sbjct: 654 LESMI--GHIHEL-SLQMYGCRVVQRALEAIDNEGQL--RIIEELKDHILICCKDQNGNH 708
Query: 139 VILQCLEPSYNHKNDFIYQAALEHCLY-LACHEQGCINLNNFIDNMKGSRRKQILHLISV 197
VI + +E +L++ +Y L+ H GC + ++ +K IL ++
Sbjct: 709 VIQKSIEKIKPFSQIRYILTSLDNQIYHLSTHPYGCRVIQRLLEYSDIDDQKLILSQLNN 768
Query: 198 NAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLKYQ-- 255
L + GNYV+QH+L + I + G V S K S V++KC+K+
Sbjct: 769 FLYYLILDQYGNYVIQHILENGTQEEKEPILEIVLGSVVQFSKHKFASNVIEKCIKFGDI 828
Query: 256 NAVHYIIEELLNSDQILQVANDKYGNYVIQTALAETMRQDRLS--VHQRLVTKLQQHLAA 313
N I+ E++ ++ + +D G V + + M +D+ V Q+LV
Sbjct: 829 NQRKRILHEVMLGNETILGDDDIDGEPVKEDSPLALMVKDQFGNYVIQKLVEAFDGDERK 888
Query: 314 LRVMK 318
L ++K
Sbjct: 889 LLIIK 893
>SGD|S000003936 [details] [associations]
symbol:PUF3 "Protein of the mitochondrial outer surface"
species:4932 "Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=IDA] [GO:0005741 "mitochondrial outer membrane"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0032473
"external side of mitochondrial outer membrane" evidence=IDA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IMP] [GO:0051646
"mitochondrion localization" evidence=IMP] [GO:0007005
"mitochondrion organization" evidence=IMP] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009060 "aerobic respiration"
evidence=IMP] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0016020 "membrane" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SGD:S000003936 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0005741 GO:GO:0003729
EMBL:BK006945 GO:GO:0009060 GO:GO:0007005 GO:GO:0008298
GO:GO:0000288 EMBL:X97560 EMBL:X91488 GO:GO:0051646 eggNOG:COG5099
GO:GO:0032473 OrthoDB:EOG4RR9RJ EMBL:Z73117 EMBL:Z73118 PIR:S64755
RefSeq:NP_013088.1 PDB:3K49 PDB:3K4E PDBsum:3K49 PDBsum:3K4E
ProteinModelPortal:Q07807 SMR:Q07807 DIP:DIP-4449N IntAct:Q07807
MINT:MINT-552454 STRING:Q07807 PaxDb:Q07807 PeptideAtlas:Q07807
EnsemblFungi:YLL013C GeneID:850647 KEGG:sce:YLL013C CYGD:YLL013c
GeneTree:ENSGT00680000100664 OMA:FIPYLIQ EvolutionaryTrace:Q07807
NextBio:966590 Genevestigator:Q07807 GermOnline:YLL013C
Uniprot:Q07807
Length = 879
Score = 162 (62.1 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 68/303 (22%), Positives = 139/303 (45%)
Query: 12 HDLFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCN 71
H L +DQ GS+++Q L++ + + +F + EL + +G +V KF E +
Sbjct: 542 HSL-EFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGS 600
Query: 72 ESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLP--PLLYHVMSALKRLFKF 129
+ Q ++ + F+ + L S+ + ++K ++ + L+ + ++ ++ K
Sbjct: 601 KIQKNTLVDQ--FKGNMKQL-SLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIK- 656
Query: 130 LMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRK 189
+ G+ VI + +E K FI + H +L+ H GC + ++ ++
Sbjct: 657 ---DQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQE 713
Query: 190 QILHLISVNAASLSRHRSGNYVVQHVLSLEDPF----LIDA---ICFALRGHYVDLSLTK 242
IL+ + L + + GNYV+Q+VL +D F ++D I + + V+ S K
Sbjct: 714 SILNELKDFIPYLIQDQYGNYVIQYVLQ-QDQFTNKEMVDIKQEIIETVANNVVEYSKHK 772
Query: 243 CGSFVVQKCLKY--QNAVHYIIEELLNSDQ--ILQVANDKYGNYVIQTALAETMRQDRLS 298
S VV+K + Y +N II ++L D+ L + +D +I+ A + Q ++
Sbjct: 773 FASNVVEKSILYGSKNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANYVIQKLVN 832
Query: 299 VHQ 301
V +
Sbjct: 833 VSE 835
Score = 143 (55.4 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 52/190 (27%), Positives = 87/190 (45%)
Query: 138 SVILQCLEPSYNHKN---DFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHL 194
S +L+ L S + KN + + H L + G + + S ++ I +
Sbjct: 515 SPLLEQLRNSSSDKNSNSNMSLKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNE 574
Query: 195 ISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLKY 254
I +A LS GNYV+Q + + +G+ LSL V+QK L+Y
Sbjct: 575 IRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEY 634
Query: 255 QNAVHYIIEELLN-SDQILQVANDKYGNYVIQTALAETMRQDRLSVHQRLVTKLQQHLAA 313
++ + IE +L SD +LQ+ D+ GN+VIQ A+ ET+ ++L +++ L H+
Sbjct: 635 IDS-NQRIELVLELSDSVLQMIKDQNGNHVIQKAI-ETIPIEKLPF---ILSSLTGHIYH 689
Query: 314 LRVMKYGSNV 323
L YG V
Sbjct: 690 LSTHSYGCRV 699
>SGD|S000003146 [details] [associations]
symbol:MPT5 "mRNA-binding protein of the PUF family"
species:4932 "Saccharomyces cerevisiae" [GO:0030674 "protein
binding, bridging" evidence=IPI] [GO:0045947 "negative regulation
of translational initiation" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:1900153 "positive regulation of nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SGD:S000003146 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BK006941 GO:GO:0045947
GO:GO:0003729 eggNOG:COG5099 GeneTree:ENSGT00390000017241
EMBL:X83690 EMBL:Z72700 EMBL:D25541 EMBL:D26184 PIR:S64195
RefSeq:NP_011337.1 ProteinModelPortal:P39016 SMR:P39016
DIP:DIP-2271N IntAct:P39016 MINT:MINT-2779525 STRING:P39016
PaxDb:P39016 PRIDE:P39016 EnsemblFungi:YGL178W GeneID:852697
KEGG:sce:YGL178W CYGD:YGL178w HOGENOM:HOG000113640 OMA:ISINQYG
OrthoDB:EOG42NN7Z NextBio:972038 Genevestigator:P39016
GermOnline:YGL178W GO:GO:1900153 Uniprot:P39016
Length = 859
Score = 161 (61.7 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 63/278 (22%), Positives = 124/278 (44%)
Query: 13 DLFSLAQDQEGSQYLQENLS--SGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESC 70
D LA DQ G ++LQ+ L S + + D ++ + F +L+ +G ++ K +
Sbjct: 214 DYIKLATDQFGCRFLQKKLETPSESNMVRDLMYEQIKPFFLDLILDPFGNYLVQKLCDYL 273
Query: 71 NESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVV---AHLPPLLYHVMSALKRLF 127
Q L+I T +F + S++++G+ S++K+I V + ++ +
Sbjct: 274 TAEQKTLLIQ--TIYPNVFQI-SINQYGTRSLQKIIDTVDNEVQIDLIIKGFSQEFTSIE 330
Query: 128 KFLMMTKP--GSSVILQCLEPSYNHKNDFIYQAALE--HCLYLACHEQGCINLNNFIDNM 183
+ + + G+ VI +C+ K FI A +E + + ++ H+ GC L +
Sbjct: 331 QVVTLINDLNGNHVIQKCIFKFSPSKFGFIIDAIVEQNNIITISTHKHGCCVLQKLLSVC 390
Query: 184 KGSRRKQILHLISVNAASLSRHRSGNYVVQHVLSLE--DPFLIDAICFALRGHYVDLSLT 241
+ +I I L + GNY++Q +L ++ D +L+ + L LS
Sbjct: 391 TLQQIFKISVKIVQFLPGLINDQFGNYIIQFLLDIKELDFYLLAELFNRLSNELCQLSCL 450
Query: 242 KCGSFVVQKCLK--YQNAVHYIIEELLNSDQILQVAND 277
K S VV+K +K ++ +I+ + Q VA+D
Sbjct: 451 KFSSNVVEKFIKKLFRIITGFIVNNNGGASQRTAVASD 488
Score = 125 (49.1 bits), Expect = 0.00014, P = 0.00014
Identities = 55/267 (20%), Positives = 116/267 (43%)
Query: 69 SCNESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFK 128
S + S + I + +D ++ + D+FG ++K ++ + + + +K F
Sbjct: 195 SSSTSSSMVEISALPLRDLDYIKLATDQFGCRFLQKKLETPSESNMVRDLMYEQIKPFFL 254
Query: 129 FLMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRR 188
L++ G+ ++ + + + + Q + ++ ++ G +L ID + +
Sbjct: 255 DLILDPFGNYLVQKLCDYLTAEQKTLLIQTIYPNVFQISINQYGTRSLQKIIDTVDNEVQ 314
Query: 189 KQIL------HLISVN-AASLSRHRSGNYVVQHVLSLEDP----FLIDAICFALRGHYVD 237
++ S+ +L +GN+V+Q + P F+IDAI + + +
Sbjct: 315 IDLIIKGFSQEFTSIEQVVTLINDLNGNHVIQKCIFKFSPSKFGFIIDAI--VEQNNIIT 372
Query: 238 LSLTKCGSFVVQKCLKYQNAVHYIIEELLNSDQILQ-VANDKYGNYVIQTALAETMRQDR 296
+S K G V+QK L + I + + Q L + ND++GNY+IQ L +++
Sbjct: 373 ISTHKHGCCVLQKLLSVCT-LQQIFKISVKIVQFLPGLINDQFGNYIIQFLL--DIKELD 429
Query: 297 LSVHQRLVTKLQQHLAALRVMKYGSNV 323
+ L +L L L +K+ SNV
Sbjct: 430 FYLLAELFNRLSNELCQLSCLKFSSNV 456
Score = 43 (20.2 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 277 DKYGNYVIQTAL 288
D +GNY +QT L
Sbjct: 515 DNFGNYALQTLL 526
>ZFIN|ZDB-GENE-081031-76 [details] [associations]
symbol:pum2 "pumilio homolog 2 (Drosophila)"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 ZFIN:ZDB-GENE-081031-76
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
GeneTree:ENSGT00390000017241 EMBL:CABZ01062788 EMBL:CABZ01062789
EMBL:CABZ01062790 EMBL:CU468963 IPI:IPI00864826
Ensembl:ENSDART00000086578 Bgee:F1R4Q6 Uniprot:F1R4Q6
Length = 1206
Score = 160 (61.4 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 84/321 (26%), Positives = 138/321 (42%)
Query: 15 FSLAQDQEGSQYLQE--NLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNE 72
+ L D G+ +Q+ S D ++ L + G L YG V K +ES +
Sbjct: 884 YQLMTDVFGNYVIQKFFEFGSADQKLA--LATRIRGHVLPLALQMYGCRVIQKALESISS 941
Query: 73 SQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMM 132
Q + + + D L D+ G+ V+K I+ V P L ++ A + F++
Sbjct: 942 DQQVISDI-VRELDGHVLKCVKDQNGNHVVQKCIECVQ--PQALQFIIDAFQGQV-FVLS 997
Query: 133 TKP-GSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQI 191
T P G VI + LE + I + +H L + + L KG
Sbjct: 998 THPYGCRVIQRILEHCTQEQTLPILEELHQHSEQLG-QKNTSVQLKV---TFKG------ 1047
Query: 192 LHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKC 251
L + S + L + + GNYV+QHVL P I +RG + LS K S VV+KC
Sbjct: 1048 LRICSFDL--LFKDQYGNYVIQHVLEHGRPEDKSKIVAEVRGKVLALSQHKFASNVVEKC 1105
Query: 252 LKYQNAVH--YIIEELL-NSD----QILQVANDKYGNYVIQTAL--AETMRQDRLSVHQR 302
+ + + +I+E+ D + + D+Y NYV+Q + AE Q ++ +H
Sbjct: 1106 VIHSSRAERALLIDEVCCQKDGPHSALYTMMKDQYANYVVQRMIDMAEPA-QRKIIMH-- 1162
Query: 303 LVTKLQQHLAALRVMKYGSNV 323
K++ H+A LR YG ++
Sbjct: 1163 ---KIRPHIATLRKYTYGKHI 1180
Score = 139 (54.0 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 64/309 (20%), Positives = 133/309 (43%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
+ +QDQ GS+++Q+ L S +F + ++LM+ +G +V KF E +
Sbjct: 847 MVEFSQDQHGSRFIQQKLERATSAERQMVFGEILQAAYQLMTDVFGNYVIQKFFEFGSAD 906
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMT 133
Q + +I + + LA + +G ++K ++ ++ ++ ++ L +
Sbjct: 907 QKLALATRI--RGHVLPLA-LQMYGCRVIQKALESISSDQQVISDIVRELDGHVLKCVKD 963
Query: 134 KPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILH 193
+ G+ V+ +C+E FI A L+ H GC + +++ + IL
Sbjct: 964 QNGNHVVQKCIECVQPQALQFIIDAFQGQVFVLSTHPYGCRVIQRILEHCTQEQTLPILE 1023
Query: 194 LISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAIC-FALRGHYVDLSLTKCGSFVVQKCL 252
+ ++ L + N VQ L+ F IC F L L + G++V+Q L
Sbjct: 1024 ELHQHSEQLGQK---NTSVQ----LKVTFKGLRICSFDL------LFKDQYGNYVIQHVL 1070
Query: 253 KYQNAVHY--IIEELLNSDQILQVANDKYGNYVIQTALAETMRQDR-LSVHQRLVTKLQQ 309
++ I+ E+ ++L ++ K+ + V++ + + R +R L + + K
Sbjct: 1071 EHGRPEDKSKIVAEVRG--KVLALSQHKFASNVVEKCVIHSSRAERALLIDEVCCQKDGP 1128
Query: 310 HLAALRVMK 318
H A +MK
Sbjct: 1129 HSALYTMMK 1137
>ASPGD|ASPL0000000865 [details] [associations]
symbol:AN6587 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000110 eggNOG:COG5099 OrthoDB:EOG4RR9RJ
RefSeq:XP_664191.1 ProteinModelPortal:Q5AYP3
EnsemblFungi:CADANIAT00007365 GeneID:2870653 KEGG:ani:AN6587.2
HOGENOM:HOG000201252 OMA:SHKSSPQ Uniprot:Q5AYP3
Length = 849
Score = 157 (60.3 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 74/306 (24%), Positives = 140/306 (45%)
Query: 20 DQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALII 79
DQ GS++LQ+ + + +S D++F + +L +G +V K E N++Q ++
Sbjct: 470 DQYGSRFLQQKIETANSDEKDRVFREILPNFLQLAQDIFGNYVAQKLYEHGNQTQKKMMT 529
Query: 80 LKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMTKPGSSV 139
+ + ++ L S+ +G V+K ++ V + V ++ + + ++ G+ V
Sbjct: 530 EDM--RSKVVKL-SLSPYGCRVVQKALEHVL-TDQQAWLVREIQPQVLE-CVESQHGNHV 584
Query: 140 ILQCLE--PSYNHKNDF-IYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLIS 196
I + E P+ K ++ +E + H GC + ++ + R+ IL I
Sbjct: 585 IQKVFEYVPTQYTKGLVDSFRGQVER---QSTHSYGCRVIQRMLEFCEDVDRRFILAEIR 641
Query: 197 VNAASLSRHRSGNYVVQHVLSL---ED-PFLIDAICFALRGHYVDLSLTKCGSFVVQKCL 252
A L + GNYV+QH++ ED F+I+ + L + S K S VV+K +
Sbjct: 642 ACAPRLIEDQYGNYVIQHIIQSGEEEDRSFMIEMVKQKLLWY----SKHKFASNVVEKSI 697
Query: 253 KYQNAVHY--IIEELL-----NSDQILQVANDKYGNYVIQTALAETMRQDRLSVHQRLVT 305
++ N II L + Q++++ D+YGNYV Q L +R ++ R +
Sbjct: 698 EFGNEAQRQDIITRLTAKTEGHETQLIELMADQYGNYVFQKVLGHLSGVERAALVDR-IK 756
Query: 306 KLQQHL 311
L HL
Sbjct: 757 PLLVHL 762
>TAIR|locus:2035312 [details] [associations]
symbol:PUM22 "pumilio 22" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 PROSITE:PS50302
PROSITE:PS50303 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005737 GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 EMBL:AC023628 IPI:IPI00518100
PIR:F86144 RefSeq:NP_171648.1 UniGene:At.51446
ProteinModelPortal:Q9LNI2 EnsemblPlants:AT1G01410.1 GeneID:837547
KEGG:ath:AT1G01410 TAIR:At1g01410 eggNOG:NOG237520
HOGENOM:HOG000153055 InParanoid:Q9LNI2 OMA:MTHERGY PhylomeDB:Q9LNI2
ProtClustDB:CLSN2912781 Genevestigator:Q9LNI2 Uniprot:Q9LNI2
Length = 361
Score = 149 (57.5 bits), Expect = 7.6e-08, P = 7.6e-08
Identities = 81/331 (24%), Positives = 146/331 (44%)
Query: 6 FEHCTNHDLFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGK 65
F H T L L+ D G L++ ++ D + D+ +++ L G +
Sbjct: 25 FCHITYRHLLVLSSDDNGCVILKKVITIADDFLKDEFLDLIAQHAHSLSMHDLGISLIQH 84
Query: 66 FIESCNESQLALIILKITFQD--QLF-LLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSA 122
+E L K T QD +L L+A D+ S+SV V L L +M
Sbjct: 85 VLE--------LDFTKKTTQDDKRLHELMAEFDEVLSTSVTA---DVDKLHKLASKLMLD 133
Query: 123 LKRLFKFLMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGC-INLNNF-I 180
F+F++ T+ GS +++Q + + I + + + + G I + +
Sbjct: 134 SDLFFEFVI-TRRGS-LMIQIILGKSEEVDQVILAGVKQRFIDVTTNFYGYRIMIQTIKV 191
Query: 181 DNMKGSRR--KQILHLISVNAASLSRHRS-GNYVVQHVLSLEDPFLIDAICFALRGHYVD 237
+G + QIL LI V+A L++ GN QH ++L I L+ HY++
Sbjct: 192 FKKRGDLKVYDQILRLIGVHALYLTKDPDMGNKTFQHAINLHHQDCTTFIACGLQSHYIE 251
Query: 238 LSLTKCGSFVVQKCLKYQ-NAVHYII--EELLNSDQ--ILQVANDKYGNYVIQTALAETM 292
LS K GS +V+ + + + V ++ E++ D+ ++++A D+YGN +++ LA
Sbjct: 252 LSFLKHGSKIVEMLIDDRISMVPLVLLMMEIVKCDEDTLVRLATDEYGNNILKKFLA-LA 310
Query: 293 RQDRLSVHQRLVTKLQQHLAALRVMKYGSNV 323
++ + LV KL L +LR G N+
Sbjct: 311 KEHKEDFFGDLVDKLNPLLDSLRGT-LGENI 340
>POMBASE|SPAC4G9.05 [details] [associations]
symbol:mpf1 "meiotic PUF family protein 1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0007126
"meiosis" evidence=IEP] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
PomBase:SPAC4G9.05 GO:GO:0007126 GO:GO:0005737 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CU329670_GR GO:GO:0003729 eggNOG:COG5099
OrthoDB:EOG4QNR4B EMBL:AB248102 PIR:T38864 RefSeq:NP_593687.1
ProteinModelPortal:Q10238 EnsemblFungi:SPAC4G9.05.1 GeneID:2543134
KEGG:spo:SPAC4G9.05 NextBio:20804161 Uniprot:Q10238
Length = 581
Score = 152 (58.6 bits), Expect = 8.3e-08, P = 8.3e-08
Identities = 67/316 (21%), Positives = 131/316 (41%)
Query: 20 DQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALII 79
DQ S LQ+ L + D L + F+ LM ++G F+ K E E+QL
Sbjct: 266 DQAASLSLQQQLKNEDIEDNINLINTILPFSVTLMKNKFGNFLIQKCFEYSTEAQLQSFS 325
Query: 80 LKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMTKPGSSV 139
F + S+D FGS ++K +++ +++ L +M + V
Sbjct: 326 Y---FLKKHVKELSIDAFGSHVLQKSLEIYPER--FTNNLIEELIECLPATLMQRHSCHV 380
Query: 140 ILQCLEPSYNHKNDFIYQAALEHC----LYLACHEQGCINLNNFIDNMKGSRRKQILHLI 195
+ E D I+ + L ++ E G + + +N K ++ L I
Sbjct: 381 WQKFFETRRKSLVDGIFDHFNKKMQGKWLQVSVSEMGSLVVQTIFENCKEKDKRTCLDEI 440
Query: 196 SVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLKYQ 255
N + + GN+V+QH++ I +L S + S VV++ L+
Sbjct: 441 INNMDQIICGQWGNWVIQHIIEHGSEPDKQRILNSLLKEVESYSTNRYASKVVERALRVC 500
Query: 256 NAVHY--IIEELLNSDQIL------QVANDKYGNYVIQTALAETMRQDRLSVHQRLVTKL 307
+ + ++E+ L ++A+++YGNY++Q L + ++++ + L
Sbjct: 501 HVTFFDRYVKEITTPQNELPTIFLQEIASNQYGNYIVQYLL-QVATPSQINL---MAEHL 556
Query: 308 QQHLAALRVMKYGSNV 323
++H+ +LR KYG +
Sbjct: 557 KKHMVSLRGHKYGQRI 572
>GENEDB_PFALCIPARUM|PFD0825c [details] [associations]
symbol:PFD0825c "RNA-binding protein of
pumilio/mpt5 family, putative" species:5833 "Plasmodium falciparum"
[GO:0017148 "negative regulation of translation" evidence=ISS]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0017148 GO:GO:0003723 EMBL:AL844503
HOGENOM:HOG000225260 RefSeq:XP_001351478.1
ProteinModelPortal:Q8I1R7 EnsemblProtists:PFD0825c:mRNA
GeneID:812518 KEGG:pfa:PFD0825c EuPathDB:PlasmoDB:PF3D7_0417100
OMA:IDHINDI ProtClustDB:CLSZ2500510 Uniprot:Q8I1R7
Length = 514
Score = 125 (49.1 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 61/309 (19%), Positives = 127/309 (41%)
Query: 12 HDLFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCN 71
+D++ L + G +Y+ + L + + + + T L YG +V + +
Sbjct: 197 YDIYFLCFHKNGCEYIIKKLKEDNKEEKEIILNSLLIDTMSLCPDIYGSYVAQSIFDLKD 256
Query: 72 ESQLALIILKITFQDQLFLLAS---VDKFGSSSVKKLIKVVAHLPPLLYHVMSALKR-LF 127
E K F D+ S + +G ++K ++ ++ + L+ L
Sbjct: 257 EKY------KERFTDEFLKHTSFLTLHTYGCRLIQKSLESLSD--EYKCKIFKELQEDLI 308
Query: 128 KFLMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSR 187
K++ G+ VI +C+E D I E+ +L+ H GC + I + +
Sbjct: 309 KYICHQN-GNHVIQKCVEVLPCSYIDIIINIIEEYLPFLSSHAYGC-RIVQRIYEIGNEQ 366
Query: 188 RKQILHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFV 247
+ L+ + L ++R GNYV+Q D + I + LS K +
Sbjct: 367 QINRLNEQIIKKIHLIKNRYGNYVIQKCFEHSDDNIRFIITDEIVNDIYKLSSHKYACNI 426
Query: 248 VQKCL-----KYQNAV-HYIIEELLNS-DQILQVANDKYGNYVIQTALAETMRQDRLSVH 300
++K L KY+ + I+ ++ + D I+ + D YGN+++Q L +++R +
Sbjct: 427 IEKILLKKEYKYKKKIIKKIVNDISDGKDNIINICKDCYGNFMMQKLLTTCRKKERNFII 486
Query: 301 QRLVTKLQQ 309
+ ++ L +
Sbjct: 487 KTIIENLDK 495
Score = 117 (46.2 bits), Expect = 0.00055, P = 0.00055
Identities = 35/164 (21%), Positives = 74/164 (45%)
Query: 160 LEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAASLSRHRSGNYVVQHVLSLE 219
L+H +L H GC + ++++ + +I + + H++GN+V+Q + +
Sbjct: 268 LKHTSFLTLHTYGCRLIQKSLESLSDEYKCKIFKELQEDLIKYICHQNGNHVIQKCVEVL 327
Query: 220 DPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLKYQNA--VHYIIEELLNSDQILQVAND 277
ID I + + LS G +VQ+ + N ++ + E+++ +++ +
Sbjct: 328 PCSYIDIIINIIEEYLPFLSSHAYGCRIVQRIYEIGNEQQINRLNEQIIKKIHLIK---N 384
Query: 278 KYGNYVIQTALAETMRQDRLSVHQRLVT---KLQQHLAALRVMK 318
+YGNYVIQ + R + +V KL H A +++
Sbjct: 385 RYGNYVIQKCFEHSDDNIRFIITDEIVNDIYKLSSHKYACNIIE 428
>UNIPROTKB|Q8I1R7 [details] [associations]
symbol:PFD0825c "RNA-binding protein of pumilio/mpt5
family, putative" species:36329 "Plasmodium falciparum 3D7"
[GO:0017148 "negative regulation of translation" evidence=ISS]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0017148 GO:GO:0003723 EMBL:AL844503
HOGENOM:HOG000225260 RefSeq:XP_001351478.1
ProteinModelPortal:Q8I1R7 EnsemblProtists:PFD0825c:mRNA
GeneID:812518 KEGG:pfa:PFD0825c EuPathDB:PlasmoDB:PF3D7_0417100
OMA:IDHINDI ProtClustDB:CLSZ2500510 Uniprot:Q8I1R7
Length = 514
Score = 125 (49.1 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 61/309 (19%), Positives = 127/309 (41%)
Query: 12 HDLFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCN 71
+D++ L + G +Y+ + L + + + + T L YG +V + +
Sbjct: 197 YDIYFLCFHKNGCEYIIKKLKEDNKEEKEIILNSLLIDTMSLCPDIYGSYVAQSIFDLKD 256
Query: 72 ESQLALIILKITFQDQLFLLAS---VDKFGSSSVKKLIKVVAHLPPLLYHVMSALKR-LF 127
E K F D+ S + +G ++K ++ ++ + L+ L
Sbjct: 257 EKY------KERFTDEFLKHTSFLTLHTYGCRLIQKSLESLSD--EYKCKIFKELQEDLI 308
Query: 128 KFLMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSR 187
K++ G+ VI +C+E D I E+ +L+ H GC + I + +
Sbjct: 309 KYICHQN-GNHVIQKCVEVLPCSYIDIIINIIEEYLPFLSSHAYGC-RIVQRIYEIGNEQ 366
Query: 188 RKQILHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFV 247
+ L+ + L ++R GNYV+Q D + I + LS K +
Sbjct: 367 QINRLNEQIIKKIHLIKNRYGNYVIQKCFEHSDDNIRFIITDEIVNDIYKLSSHKYACNI 426
Query: 248 VQKCL-----KYQNAV-HYIIEELLNS-DQILQVANDKYGNYVIQTALAETMRQDRLSVH 300
++K L KY+ + I+ ++ + D I+ + D YGN+++Q L +++R +
Sbjct: 427 IEKILLKKEYKYKKKIIKKIVNDISDGKDNIINICKDCYGNFMMQKLLTTCRKKERNFII 486
Query: 301 QRLVTKLQQ 309
+ ++ L +
Sbjct: 487 KTIIENLDK 495
Score = 117 (46.2 bits), Expect = 0.00055, P = 0.00055
Identities = 35/164 (21%), Positives = 74/164 (45%)
Query: 160 LEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAASLSRHRSGNYVVQHVLSLE 219
L+H +L H GC + ++++ + +I + + H++GN+V+Q + +
Sbjct: 268 LKHTSFLTLHTYGCRLIQKSLESLSDEYKCKIFKELQEDLIKYICHQNGNHVIQKCVEVL 327
Query: 220 DPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLKYQNA--VHYIIEELLNSDQILQVAND 277
ID I + + LS G +VQ+ + N ++ + E+++ +++ +
Sbjct: 328 PCSYIDIIINIIEEYLPFLSSHAYGCRIVQRIYEIGNEQQINRLNEQIIKKIHLIK---N 384
Query: 278 KYGNYVIQTALAETMRQDRLSVHQRLVT---KLQQHLAALRVMK 318
+YGNYVIQ + R + +V KL H A +++
Sbjct: 385 RYGNYVIQKCFEHSDDNIRFIITDEIVNDIYKLSSHKYACNIIE 428
>WB|WBGene00022257 [details] [associations]
symbol:puf-11 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=IMP] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0009792 GO:GO:0006915 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0000003 GO:GO:0003723 EMBL:FO081731
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
RefSeq:NP_741425.1 ProteinModelPortal:Q8IU00 SMR:Q8IU00
IntAct:Q8IU00 STRING:Q8IU00 PaxDb:Q8IU00 EnsemblMetazoa:Y73B6BL.38
GeneID:177406 KEGG:cel:CELE_Y73B6BL.38 UCSC:Y73B6BL.38 CTD:177406
WormBase:Y73B6BL.38 InParanoid:Q8IU00 OMA:HVVKCGG NextBio:896676
Uniprot:Q8IU00
Length = 505
Score = 119 (46.9 bits), Expect = 0.00032, P = 0.00032
Identities = 43/153 (28%), Positives = 77/153 (50%)
Query: 173 CINL--NNFIDNM---KGSRRKQIL--HLISVNAASLSRHRSGNYVVQHVLSLEDPFLID 225
C N+ N F+ + + ++IL HL S + +L +S V+Q + D L
Sbjct: 193 CCNMFGNFFVQRVLECSNTEEQEILTEHLAS-DLYNLCLDKSACRVIQLAIQKLDVHLAT 251
Query: 226 AICFALRGHY-VDLSLTKCGSFVVQKCLKYQ--NAVHYIIEELLNSDQILQVANDKYGNY 282
+ LR Y V LS+ + G+ V+QK +K +A +++E + D ++ V DKYG
Sbjct: 252 RLSLELRDTYLVRLSIDQNGNHVIQKIVKTLPVSAWSFVVEFFADDDNLIHVCQDKYGCR 311
Query: 283 VIQTALAETMRQDRLS-VHQRLVTKLQQHLAAL 314
VIQ+ + ET+ D + +Q+ V L+ ++ +
Sbjct: 312 VIQSTV-ETLSSDTYAECYQQRVVLLRSLMSGV 343
>UNIPROTKB|H0YC97 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000529846 Bgee:H0YC97 Uniprot:H0YC97
Length = 227
Score = 112 (44.5 bits), Expect = 0.00041, P = 0.00041
Identities = 46/192 (23%), Positives = 81/192 (42%)
Query: 136 GSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLI 195
GS I LE + + ++ L+ L G + F + ++ + I
Sbjct: 13 GSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERI 72
Query: 196 SVNAASLSRHRSGNYVVQHVLSL--EDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLK 253
+ SL+ G V+Q L D +I+ + L GH + + G+ VVQKC++
Sbjct: 73 RGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIE 132
Query: 254 --YQNAVHYIIEELLNSDQILQVANDKYGNYVIQTALAETMRQDRLSVHQRLVTKLQQHL 311
++ +II+ DQ YGNYVIQ L +D+ ++V +++ ++
Sbjct: 133 CVQPQSLQFIIDAFKGQDQ--------YGNYVIQHVLEHGRPEDK----SKIVAEIRGNV 180
Query: 312 AALRVMKYGSNV 323
L K+ SNV
Sbjct: 181 LVLSQHKFASNV 192
Score = 109 (43.4 bits), Expect = 0.00092, P = 0.00092
Identities = 44/219 (20%), Positives = 93/219 (42%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
+ +QDQ GS+++Q L +F + ++LM +G +V KF E +
Sbjct: 4 IMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLE 63
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMT 133
Q + +I + + LA + +G ++K ++ + ++ ++ L +
Sbjct: 64 QKLALAERI--RGHVLSLA-LQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKD 120
Query: 134 KPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILH 193
+ G+ V+ +C+E FI A + + G + + +++ + + +I+
Sbjct: 121 QNGNHVVQKCIECVQPQSLQFIIDA------FKGQDQYGNYVIQHVLEHGRPEDKSKIVA 174
Query: 194 LISVNAASLSRHRSGNYVVQ----HVLSLEDPFLIDAIC 228
I N LS+H+ + VV+ H E LID +C
Sbjct: 175 EIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVC 213
>WB|WBGene00004239 [details] [associations]
symbol:puf-3 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0051301 "cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0035046 "pronuclear
migration" evidence=IMP] [GO:0009992 "cellular water homeostasis"
evidence=IMP] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0009792 GO:GO:0035046
GO:GO:0006915 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000910 GO:GO:0003730 GO:GO:0009992 EMBL:AL021488
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
HSSP:Q14671 RefSeq:NP_502606.1 ProteinModelPortal:Q9U2G4 SMR:Q9U2G4
IntAct:Q9U2G4 MINT:MINT-251162 STRING:Q9U2G4 PaxDb:Q9U2G4
EnsemblMetazoa:Y45F10A.2.1 EnsemblMetazoa:Y45F10A.2.2 GeneID:178320
KEGG:cel:CELE_Y45F10A.2 UCSC:Y45F10A.2.1 CTD:178320
WormBase:Y45F10A.2 InParanoid:Q9U2G4 OMA:HNEPANA NextBio:900640
Uniprot:Q9U2G4
Length = 502
Score = 118 (46.6 bits), Expect = 0.00041, P = 0.00041
Identities = 77/309 (24%), Positives = 136/309 (44%)
Query: 11 NHDLFSLAQDQEGSQYLQENL-SSGDSRILDKLF--WVVSGFTF-ELMSGQYGRFVFGKF 66
N L A D+ G ++LQE+ + D+ + KLF V F L S +G F +
Sbjct: 143 NDALVEFATDKNGCRFLQEHYPTENDNDVHQKLFRKLVEDRAIFLSLCSNMFGNFFVQRV 202
Query: 67 IESCNESQLALIILKITFQDQLFLLASVDKFGSSSVKKLI-KVVAHLPPLLYHVMSALKR 125
+E C+ ++ I+ + D L+ L +DK ++ I K+ HL L +
Sbjct: 203 LE-CSNTEEQEILTEHLATD-LYNLC-LDKSACRVIQLAIQKLDVHLATRLSLELRDT-H 258
Query: 126 LFKFLMMTKPGSSVILQCLE--P--SYNHKNDFIYQAALEHCLYLACHEQGCINLNNFID 181
L + L + + G+ VI + ++ P S+ DF A ++ +++ + GC + + ++
Sbjct: 259 LVR-LSIDQNGNHVIQKIVKTLPVSSWTFLVDFF--ADDDNLIHVCQDKYGCRVIQSTVE 315
Query: 182 NMKGSRRKQ-----ILHLISV------NAASLSRHRSGNYVVQHVLSLEDPFLI--DAIC 228
+ + Q ++ L S+ N L+ + NYVVQHV+ D + D I
Sbjct: 316 TLSTDQYAQCYQHRVILLRSLMAGVTRNCTQLASNEFANYVVQHVIKCGDALAVYRDIII 375
Query: 229 F-ALRGHYVDLSLTKCGSFVVQ---KCLKYQ------NAVH--YIIEELLNSDQILQVAN 276
L + + +S K S VV+ +C Y+ N + YI N D + +
Sbjct: 376 EQCLLQNLLSMSQEKYASHVVEVAFECAPYRLVAEMMNEIFEGYIPHPDTNRDALDILLF 435
Query: 277 DKYGNYVIQ 285
+YGNYV+Q
Sbjct: 436 HQYGNYVVQ 444
>UNIPROTKB|Q9U2G4 [details] [associations]
symbol:puf-3 "Protein PUF-3" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0009792 GO:GO:0035046
GO:GO:0006915 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000910 GO:GO:0003730 GO:GO:0009992 EMBL:AL021488
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
HSSP:Q14671 RefSeq:NP_502606.1 ProteinModelPortal:Q9U2G4 SMR:Q9U2G4
IntAct:Q9U2G4 MINT:MINT-251162 STRING:Q9U2G4 PaxDb:Q9U2G4
EnsemblMetazoa:Y45F10A.2.1 EnsemblMetazoa:Y45F10A.2.2 GeneID:178320
KEGG:cel:CELE_Y45F10A.2 UCSC:Y45F10A.2.1 CTD:178320
WormBase:Y45F10A.2 InParanoid:Q9U2G4 OMA:HNEPANA NextBio:900640
Uniprot:Q9U2G4
Length = 502
Score = 118 (46.6 bits), Expect = 0.00041, P = 0.00041
Identities = 77/309 (24%), Positives = 136/309 (44%)
Query: 11 NHDLFSLAQDQEGSQYLQENL-SSGDSRILDKLF--WVVSGFTF-ELMSGQYGRFVFGKF 66
N L A D+ G ++LQE+ + D+ + KLF V F L S +G F +
Sbjct: 143 NDALVEFATDKNGCRFLQEHYPTENDNDVHQKLFRKLVEDRAIFLSLCSNMFGNFFVQRV 202
Query: 67 IESCNESQLALIILKITFQDQLFLLASVDKFGSSSVKKLI-KVVAHLPPLLYHVMSALKR 125
+E C+ ++ I+ + D L+ L +DK ++ I K+ HL L +
Sbjct: 203 LE-CSNTEEQEILTEHLATD-LYNLC-LDKSACRVIQLAIQKLDVHLATRLSLELRDT-H 258
Query: 126 LFKFLMMTKPGSSVILQCLE--P--SYNHKNDFIYQAALEHCLYLACHEQGCINLNNFID 181
L + L + + G+ VI + ++ P S+ DF A ++ +++ + GC + + ++
Sbjct: 259 LVR-LSIDQNGNHVIQKIVKTLPVSSWTFLVDFF--ADDDNLIHVCQDKYGCRVIQSTVE 315
Query: 182 NMKGSRRKQ-----ILHLISV------NAASLSRHRSGNYVVQHVLSLEDPFLI--DAIC 228
+ + Q ++ L S+ N L+ + NYVVQHV+ D + D I
Sbjct: 316 TLSTDQYAQCYQHRVILLRSLMAGVTRNCTQLASNEFANYVVQHVIKCGDALAVYRDIII 375
Query: 229 F-ALRGHYVDLSLTKCGSFVVQ---KCLKYQ------NAVH--YIIEELLNSDQILQVAN 276
L + + +S K S VV+ +C Y+ N + YI N D + +
Sbjct: 376 EQCLLQNLLSMSQEKYASHVVEVAFECAPYRLVAEMMNEIFEGYIPHPDTNRDALDILLF 435
Query: 277 DKYGNYVIQ 285
+YGNYV+Q
Sbjct: 436 HQYGNYVVQ 444
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.325 0.137 0.406 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 335 335 0.00092 116 3 11 22 0.45 33
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 72
No. of states in DFA: 603 (64 KB)
Total size of DFA: 228 KB (2124 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 29.02u 0.18s 29.20t Elapsed: 00:00:01
Total cpu time: 29.03u 0.18s 29.21t Elapsed: 00:00:01
Start: Fri May 10 07:27:54 2013 End: Fri May 10 07:27:55 2013